diff --git a/.github/workflows/diff.yml b/.github/workflows/diff.yml index 3db66357dd..938892349f 100644 --- a/.github/workflows/diff.yml +++ b/.github/workflows/diff.yml @@ -10,7 +10,7 @@ env: # A workflow run is made up of one or more jobs that can run sequentially or in parallel jobs: branch_status: - if: ${{ github.event.issue.pull_request }} + if: ${{ github.event.issue.pull_request && github.event.issue.state == 'open' }} runs-on: ubuntu-latest permissions: contents: read diff --git a/.gitignore b/.gitignore index 387853281c..8e0b33eff0 100644 --- a/.gitignore +++ b/.gitignore @@ -113,6 +113,7 @@ src/ontology/ed_definitions_merged.owl src/ontology/imports/*.obo imports/*.obo uberon-lastbuild.owl +uberon-lastbuild.obo src/mappings/uberon-local.sssom.tsv src/mappings/uberon.sssom.tsv src/ontology/imports/*_terms_combined.txt diff --git a/src/mappings/fbbt.sssom.tsv b/src/mappings/fbbt.sssom.tsv index 8babe46484..32f505ef27 100644 --- a/src/mappings/fbbt.sssom.tsv +++ b/src/mappings/fbbt.sssom.tsv @@ -12,360 +12,359 @@ #subject_source: obo:fbbt.owl #object_source: obo:uberon.owl #mapping_date: 2024-07-12 -subject_id subject_label predicate_id object_id mapping_justification comment -FBbt:00000001 organism semapv:crossSpeciesExactMatch UBERON:0000468 semapv:ManualMappingCuration -FBbt:00000002 tagma semapv:crossSpeciesExactMatch UBERON:6000002 semapv:ManualMappingCuration -FBbt:00000003 segment semapv:crossSpeciesExactMatch UBERON:0000914 semapv:ManualMappingCuration -FBbt:00000004 head semapv:crossSpeciesExactMatch UBERON:6000004 semapv:ManualMappingCuration Somewhat redundant with ‘insect {adult/larval} head’ -FBbt:00000005 ocular segment semapv:crossSpeciesExactMatch UBERON:6000005 semapv:ManualMappingCuration -FBbt:00000006 head segment semapv:crossSpeciesExactMatch UBERON:6000006 semapv:ManualMappingCuration -FBbt:00000007 procephalic segment semapv:crossSpeciesExactMatch UBERON:6000007 semapv:ManualMappingCuration Uberon term should probably be named ‘insect procephalic segment’? -FBbt:00000008 labral segment semapv:crossSpeciesExactMatch UBERON:6000008 semapv:ManualMappingCuration Uberon term should probably be named ‘insect labral segment’? -FBbt:00000009 antennal segment semapv:crossSpeciesExactMatch UBERON:6000009 semapv:ManualMappingCuration -FBbt:00000011 gnathal segment semapv:crossSpeciesExactMatch UBERON:6000011 semapv:ManualMappingCuration -FBbt:00000014 labial segment semapv:crossSpeciesExactMatch UBERON:6000014 semapv:ManualMappingCuration -FBbt:00000015 thorax semapv:crossSpeciesExactMatch UBERON:6000015 semapv:ManualMappingCuration -FBbt:00000016 thoracic segment semapv:crossSpeciesExactMatch UBERON:6000016 semapv:ManualMappingCuration -FBbt:00000017 prothoracic segment semapv:crossSpeciesExactMatch UBERON:6000017 semapv:ManualMappingCuration -FBbt:00000018 mesothoracic segment semapv:crossSpeciesExactMatch UBERON:6000018 semapv:ManualMappingCuration -FBbt:00000019 metathoracic segment semapv:crossSpeciesExactMatch UBERON:6000019 semapv:ManualMappingCuration -FBbt:00000020 abdomen semapv:crossSpeciesExactMatch UBERON:6000020 semapv:ManualMappingCuration -FBbt:00000021 abdominal segment semapv:crossSpeciesExactMatch UBERON:6000021 semapv:ManualMappingCuration -FBbt:00000029 abdominal segment 8 semapv:crossSpeciesExactMatch UBERON:6000029 semapv:ManualMappingCuration Why does Uberon only have terms for segments 8 and 9? -FBbt:00000030 abdominal segment 9 semapv:crossSpeciesExactMatch UBERON:6000030 semapv:ManualMappingCuration Likewise -FBbt:00000038 chorion semapv:crossSpeciesExactMatch UBERON:0000920 semapv:ManualMappingCuration -FBbt:00000042 vitelline membrane semapv:crossSpeciesExactMatch UBERON:0003125 semapv:ManualMappingCuration -FBbt:00000046 dorsal appendage semapv:crossSpeciesExactMatch UBERON:6000046 semapv:ManualMappingCuration -FBbt:00000052 embryo semapv:crossSpeciesExactMatch UBERON:0000922 semapv:ManualMappingCuration -FBbt:00000093 ventral midline of embryo semapv:crossSpeciesExactMatch UBERON:0009571 semapv:ManualMappingCuration -FBbt:00000095 amnioserosa semapv:crossSpeciesExactMatch UBERON:0010302 semapv:ManualMappingCuration Uberon term commented as “may be obsoleted once added to the insect ontology” -FBbt:00000096 ventral furrow semapv:crossSpeciesExactMatch UBERON:6000096 semapv:ManualMappingCuration -FBbt:00000097 cephalic furrow semapv:crossSpeciesExactMatch UBERON:6000097 semapv:ManualMappingCuration -FBbt:00000104 mesoderm anlage semapv:crossSpeciesExactMatch UBERON:6000104 semapv:ManualMappingCuration -FBbt:00000110 germ layer semapv:crossSpeciesExactMatch UBERON:0000923 semapv:ManualMappingCuration -FBbt:00000111 ectoderm semapv:crossSpeciesExactMatch UBERON:0000924 semapv:ManualMappingCuration -FBbt:00000112 dorsal ectoderm semapv:crossSpeciesExactMatch UBERON:6000112 semapv:ManualMappingCuration -FBbt:00000119 anterior ectoderm semapv:crossSpeciesExactMatch UBERON:6000119 semapv:ManualMappingCuration -FBbt:00000123 amnioproctodeal invagination semapv:crossSpeciesExactMatch UBERON:0000931 semapv:ManualMappingCuration -FBbt:00000125 endoderm semapv:crossSpeciesExactMatch UBERON:0000925 semapv:ManualMappingCuration -FBbt:00000126 mesoderm semapv:crossSpeciesExactMatch UBERON:0000926 semapv:ManualMappingCuration -FBbt:00000128 trunk mesoderm semapv:crossSpeciesExactMatch UBERON:6000128 semapv:ManualMappingCuration -FBbt:00000130 visceral mesoderm semapv:crossSpeciesExactMatch UBERON:6000130 semapv:ManualMappingCuration -FBbt:00000136 mesectoderm semapv:crossSpeciesExactMatch UBERON:0000927 semapv:ManualMappingCuration -FBbt:00000137 embryonic tagma semapv:crossSpeciesExactMatch UBERON:6000137 semapv:ManualMappingCuration -FBbt:00000154 embryonic segment semapv:crossSpeciesExactMatch UBERON:6000154 semapv:ManualMappingCuration -FBbt:00000155 embryonic head semapv:crossSpeciesExactMatch UBERON:0008816 semapv:ManualMappingCuration -FBbt:00000157 embryonic head segment semapv:crossSpeciesExactMatch UBERON:6000157 semapv:ManualMappingCuration -FBbt:00000158 embryonic procephalic segment semapv:crossSpeciesExactMatch UBERON:6000158 semapv:ManualMappingCuration -FBbt:00000160 embryonic antennal segment semapv:crossSpeciesExactMatch UBERON:6000160 semapv:ManualMappingCuration -FBbt:00000162 embryonic gnathal segment semapv:crossSpeciesExactMatch UBERON:6000162 semapv:ManualMappingCuration -FBbt:00000165 embryonic labial segment semapv:crossSpeciesExactMatch UBERON:6000165 semapv:ManualMappingCuration -FBbt:00000166 embryonic thorax semapv:crossSpeciesExactMatch UBERON:6000166 semapv:ManualMappingCuration -FBbt:00000167 embryonic thoracic segment semapv:crossSpeciesExactMatch UBERON:6000167 semapv:ManualMappingCuration -FBbt:00000168 embryonic prothoracic segment semapv:crossSpeciesExactMatch UBERON:6000168 semapv:ManualMappingCuration -FBbt:00000169 embryonic mesothoracic segment semapv:crossSpeciesExactMatch UBERON:6000169 semapv:ManualMappingCuration -FBbt:00000170 embryonic metathoracic segment semapv:crossSpeciesExactMatch UBERON:6000170 semapv:ManualMappingCuration -FBbt:00000171 embryonic abdomen semapv:crossSpeciesExactMatch UBERON:6000171 semapv:ManualMappingCuration -FBbt:00000172 embryonic abdominal segment semapv:crossSpeciesExactMatch UBERON:6000172 semapv:ManualMappingCuration -FBbt:00000180 embryonic abdominal segment 8 semapv:crossSpeciesExactMatch UBERON:6000180 semapv:ManualMappingCuration -FBbt:00000181 embryonic abdominal segment 9 semapv:crossSpeciesExactMatch UBERON:6000181 semapv:ManualMappingCuration -FBbt:00000186 embryonic optic lobe primordium semapv:crossSpeciesExactMatch UBERON:6000186 semapv:ManualMappingCuration -FBbt:00000439 stomodeum semapv:crossSpeciesExactMatch UBERON:0000930 semapv:ManualMappingCuration -FBbt:00001055 presumptive embryonic/larval nervous system semapv:crossSpeciesExactMatch UBERON:6001055 semapv:ManualMappingCuration -FBbt:00001056 presumptive embryonic/larval central nervous system semapv:crossSpeciesExactMatch UBERON:6001056 semapv:ManualMappingCuration -FBbt:00001057 neurogenic region semapv:crossSpeciesExactMatch UBERON:0002346 semapv:ManualMappingCuration -FBbt:00001059 visual primordium semapv:crossSpeciesExactMatch UBERON:6001059 semapv:ManualMappingCuration -FBbt:00001060 embryonic brain semapv:crossSpeciesExactMatch UBERON:6001060 semapv:ManualMappingCuration -FBbt:00001135 proneural cluster semapv:crossSpeciesExactMatch UBERON:6001135 semapv:ManualMappingCuration -FBbt:00001648 embryonic imaginal tissue semapv:crossSpeciesExactMatch UBERON:6001648 semapv:ManualMappingCuration -FBbt:00001649 imaginal disc primordium semapv:crossSpeciesExactMatch UBERON:6001649 semapv:ManualMappingCuration -FBbt:00001650 labial disc primordium semapv:crossSpeciesExactMatch UBERON:6001650 semapv:ManualMappingCuration -FBbt:00001652 eye-antennal disc primordium semapv:crossSpeciesExactMatch UBERON:6001652 semapv:ManualMappingCuration -FBbt:00001653 dorsal thoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001653 semapv:ManualMappingCuration -FBbt:00001655 dorsal mesothoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001655 semapv:ManualMappingCuration -FBbt:00001656 dorsal metathoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001656 semapv:ManualMappingCuration -FBbt:00001657 ventral thoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001657 semapv:ManualMappingCuration -FBbt:00001658 ventral prothoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001658 semapv:ManualMappingCuration -FBbt:00001661 genital disc primordium semapv:crossSpeciesExactMatch UBERON:6001661 semapv:ManualMappingCuration -FBbt:00001662 male genital disc primordium semapv:crossSpeciesExactMatch UBERON:6001662 semapv:ManualMappingCuration -FBbt:00001663 female genital disc primordium semapv:crossSpeciesExactMatch UBERON:6001663 semapv:ManualMappingCuration -FBbt:00001664 embryonic/larval circulatory system semapv:crossSpeciesExactMatch UBERON:6001664 semapv:ManualMappingCuration -FBbt:00001668 embryonic/larval lymph gland semapv:crossSpeciesExactMatch UBERON:6001668 semapv:ManualMappingCuration -FBbt:00001718 retrocerebral complex semapv:crossSpeciesExactMatch UBERON:0012325 semapv:ManualMappingCuration Uberon term commented as “will be ceded to arthropod anatomy ontology” -FBbt:00001722 ring gland semapv:crossSpeciesExactMatch UBERON:6001722 semapv:ManualMappingCuration -FBbt:00001727 larva semapv:crossSpeciesExactMatch UBERON:0002548 semapv:ManualMappingCuration -FBbt:00001728 larval tagma semapv:crossSpeciesExactMatch UBERON:6001728 semapv:ManualMappingCuration -FBbt:00001729 larval segment semapv:crossSpeciesExactMatch UBERON:6001729 semapv:ManualMappingCuration -FBbt:00001730 larval head semapv:crossSpeciesExactMatch UBERON:6001730 semapv:ManualMappingCuration -FBbt:00001731 larval ocular segment semapv:crossSpeciesExactMatch UBERON:6001731 semapv:ManualMappingCuration -FBbt:00001732 larval head segment semapv:crossSpeciesExactMatch UBERON:6001732 semapv:ManualMappingCuration -FBbt:00001733 larval procephalic segment semapv:crossSpeciesExactMatch UBERON:6001733 semapv:ManualMappingCuration -FBbt:00001734 larval labral segment semapv:crossSpeciesExactMatch UBERON:6001734 semapv:ManualMappingCuration -FBbt:00001735 larval antennal segment semapv:crossSpeciesExactMatch UBERON:6001735 semapv:ManualMappingCuration -FBbt:00001737 larval gnathal segment semapv:crossSpeciesExactMatch UBERON:6001737 semapv:ManualMappingCuration -FBbt:00001740 larval labial segment semapv:crossSpeciesExactMatch UBERON:6001740 semapv:ManualMappingCuration -FBbt:00001741 larval thorax semapv:crossSpeciesExactMatch UBERON:6001741 semapv:ManualMappingCuration -FBbt:00001742 larval thoracic segment semapv:crossSpeciesExactMatch UBERON:6001742 semapv:ManualMappingCuration -FBbt:00001743 larval prothoracic segment semapv:crossSpeciesExactMatch UBERON:6001743 semapv:ManualMappingCuration -FBbt:00001744 larval mesothoracic segment semapv:crossSpeciesExactMatch UBERON:6001744 semapv:ManualMappingCuration -FBbt:00001745 larval metathoracic segment semapv:crossSpeciesExactMatch UBERON:6001745 semapv:ManualMappingCuration -FBbt:00001746 larval abdomen semapv:crossSpeciesExactMatch UBERON:6001746 semapv:ManualMappingCuration -FBbt:00001747 larval abdominal segment semapv:crossSpeciesExactMatch UBERON:6001747 semapv:ManualMappingCuration -FBbt:00001755 larval abdominal segment 8 semapv:crossSpeciesExactMatch UBERON:6001755 semapv:ManualMappingCuration -FBbt:00001756 larval abdominal segment 9 semapv:crossSpeciesExactMatch UBERON:6001756 semapv:ManualMappingCuration -FBbt:00001760 larval imaginal tissue semapv:crossSpeciesExactMatch UBERON:6001760 semapv:ManualMappingCuration -FBbt:00001761 imaginal disc semapv:crossSpeciesExactMatch UBERON:0000939 semapv:ManualMappingCuration -FBbt:00001764 labial disc semapv:crossSpeciesExactMatch UBERON:6001764 semapv:ManualMappingCuration -FBbt:00001765 clypeo-labral disc semapv:crossSpeciesExactMatch UBERON:6001765 semapv:ManualMappingCuration -FBbt:00001766 eye-antennal disc semapv:crossSpeciesExactMatch UBERON:6001766 semapv:ManualMappingCuration -FBbt:00001767 antennal disc semapv:crossSpeciesExactMatch UBERON:6001767 semapv:ManualMappingCuration -FBbt:00001776 dorsal thoracic disc semapv:crossSpeciesExactMatch UBERON:6001776 semapv:ManualMappingCuration -FBbt:00001778 wing disc semapv:crossSpeciesExactMatch UBERON:6001778 semapv:ManualMappingCuration -FBbt:00001779 haltere disc semapv:crossSpeciesExactMatch UBERON:6001779 semapv:ManualMappingCuration -FBbt:00001780 ventral thoracic disc semapv:crossSpeciesExactMatch UBERON:6001780 semapv:ManualMappingCuration -FBbt:00001781 prothoracic leg disc semapv:crossSpeciesExactMatch UBERON:6001781 semapv:ManualMappingCuration -FBbt:00001784 genital disc semapv:crossSpeciesExactMatch UBERON:6001784 semapv:ManualMappingCuration -FBbt:00001785 male genital disc semapv:crossSpeciesExactMatch UBERON:6001785 semapv:ManualMappingCuration -FBbt:00001787 female genital disc semapv:crossSpeciesExactMatch UBERON:6001787 semapv:ManualMappingCuration -FBbt:00001790 histoblast nest semapv:crossSpeciesExactMatch UBERON:6001790 semapv:ManualMappingCuration -FBbt:00001842 embryonic/larval digestive system semapv:crossSpeciesExactMatch UBERON:6001842 semapv:ManualMappingCuration -FBbt:00001845 cephalopharyngeal skeleton semapv:crossSpeciesExactMatch UBERON:6001845 semapv:ManualMappingCuration -FBbt:00001848 epipharyngeal sclerite semapv:crossSpeciesExactMatch UBERON:6001848 semapv:ManualMappingCuration -FBbt:00001911 embryonic/larval nervous system semapv:crossSpeciesExactMatch UBERON:6001911 semapv:ManualMappingCuration -FBbt:00001919 embryonic/larval central nervous system semapv:crossSpeciesExactMatch UBERON:6001919 semapv:ManualMappingCuration -FBbt:00001920 embryonic/larval brain semapv:crossSpeciesExactMatch UBERON:6001920 semapv:ManualMappingCuration -FBbt:00001925 embryonic/larval protocerebrum semapv:crossSpeciesExactMatch UBERON:6001925 semapv:ManualMappingCuration -FBbt:00001956 optic nerve semapv:crossSpeciesExactMatch UBERON:0004904 semapv:ManualMappingCuration -FBbt:00002639 embryonic/larval sense organ semapv:crossSpeciesExactMatch UBERON:6002639 semapv:ManualMappingCuration -FBbt:00002642 embryonic/larval ocular segment sensillum semapv:crossSpeciesExactMatch UBERON:6002642 semapv:ManualMappingCuration -FBbt:00002952 prepupa semapv:crossSpeciesExactMatch UBERON:0003142 semapv:ManualMappingCuration -FBbt:00002953 pupa semapv:crossSpeciesExactMatch UBERON:0003143 semapv:ManualMappingCuration -FBbt:00003004 adult semapv:crossSpeciesExactMatch UBERON:0007023 semapv:ManualMappingCuration -FBbt:00003005 adult tagma semapv:crossSpeciesExactMatch UBERON:6003005 semapv:ManualMappingCuration -FBbt:00003006 adult segment semapv:crossSpeciesExactMatch UBERON:6003006 semapv:ManualMappingCuration -FBbt:00003007 adult head semapv:crossSpeciesExactMatch UBERON:6003007 semapv:ManualMappingCuration -FBbt:00003009 adult head segment semapv:crossSpeciesExactMatch UBERON:6003009 semapv:ManualMappingCuration -FBbt:00003010 adult procephalic segment semapv:crossSpeciesExactMatch UBERON:6003010 semapv:ManualMappingCuration -FBbt:00003011 adult labral segment semapv:crossSpeciesExactMatch UBERON:6003011 semapv:ManualMappingCuration -FBbt:00003012 adult antennal segment semapv:crossSpeciesExactMatch UBERON:6003012 semapv:ManualMappingCuration -FBbt:00003018 adult thorax semapv:crossSpeciesExactMatch UBERON:6003018 semapv:ManualMappingCuration -FBbt:00003019 adult thoracic segment semapv:crossSpeciesExactMatch UBERON:6003019 semapv:ManualMappingCuration -FBbt:00003020 adult prothoracic segment semapv:crossSpeciesExactMatch UBERON:6003020 semapv:ManualMappingCuration -FBbt:00003021 adult mesothoracic segment semapv:crossSpeciesExactMatch UBERON:6003021 semapv:ManualMappingCuration -FBbt:00003023 adult abdomen semapv:crossSpeciesExactMatch UBERON:6003023 semapv:ManualMappingCuration -FBbt:00003024 adult abdominal segment semapv:crossSpeciesExactMatch UBERON:6003024 semapv:ManualMappingCuration -FBbt:00003039 adult dorsal trunk semapv:crossSpeciesExactMatch UBERON:6003039 semapv:ManualMappingCuration -FBbt:00003125 alimentary canal semapv:crossSpeciesExactMatch UBERON:0001555 semapv:ManualMappingCuration -FBbt:00003126 adult mouth semapv:crossSpeciesExactMatch UBERON:0000165 semapv:ManualMappingCuration -FBbt:00003154 adult heart semapv:crossSpeciesExactMatch UBERON:0015230 semapv:ManualMappingCuration FBbt is missing a stage-neutral ‘heart’ -FBbt:00003259 adult somatic muscle semapv:crossSpeciesExactMatch UBERON:6003259 semapv:ManualMappingCuration -FBbt:00003559 adult nervous system semapv:crossSpeciesExactMatch UBERON:6003559 semapv:ManualMappingCuration -FBbt:00003623 adult central nervous system semapv:crossSpeciesExactMatch UBERON:6003623 semapv:ManualMappingCuration -FBbt:00003624 adult brain semapv:crossSpeciesExactMatch UBERON:6003624 semapv:ManualMappingCuration -FBbt:00003626 supraesophageal ganglion semapv:crossSpeciesExactMatch UBERON:6003626 semapv:ManualMappingCuration -FBbt:00003627 protocerebrum semapv:crossSpeciesExactMatch UBERON:6003627 semapv:ManualMappingCuration -FBbt:00003632 adult central complex semapv:crossSpeciesExactMatch UBERON:6003632 semapv:ManualMappingCuration -FBbt:00003701 adult optic lobe semapv:crossSpeciesExactMatch UBERON:0006795 semapv:ManualMappingCuration -FBbt:00004114 head sensillum semapv:crossSpeciesExactMatch UBERON:0000963 semapv:ManualMappingCuration -FBbt:00004199 lens semapv:crossSpeciesExactMatch UBERON:0000207 semapv:ManualMappingCuration -FBbt:00004200 retina semapv:crossSpeciesExactMatch UBERON:0005388 semapv:ManualMappingCuration -FBbt:00004208 developing embryonic structure semapv:crossSpeciesExactMatch UBERON:0002050 semapv:ManualMappingCuration -FBbt:00004296 sex comb semapv:crossSpeciesExactMatch UBERON:6004296 semapv:ManualMappingCuration -FBbt:00004340 wing hair semapv:crossSpeciesExactMatch UBERON:6004340 semapv:ManualMappingCuration -FBbt:00004475 sclerite semapv:crossSpeciesExactMatch UBERON:6004475 semapv:ManualMappingCuration -FBbt:00004476 tergite semapv:crossSpeciesExactMatch UBERON:6004476 semapv:ManualMappingCuration -FBbt:00004477 sternite semapv:crossSpeciesExactMatch UBERON:6004477 semapv:ManualMappingCuration -FBbt:00004481 adult external head semapv:crossSpeciesExactMatch UBERON:6004481 semapv:ManualMappingCuration -FBbt:00004482 head capsule semapv:crossSpeciesExactMatch UBERON:0003153 semapv:ManualMappingCuration -FBbt:00004492 occiput semapv:crossSpeciesExactMatch UBERON:0003155 semapv:ManualMappingCuration Uberon term commented as “belonging to another ontology but kept for disambiguation purposes” -FBbt:00004505 ocellus semapv:crossSpeciesExactMatch UBERON:0003161 semapv:ManualMappingCuration -FBbt:00004506 lateral ocellus semapv:crossSpeciesExactMatch UBERON:0003162 semapv:ManualMappingCuration -FBbt:00004507 medial ocellus semapv:crossSpeciesExactMatch UBERON:0003211 semapv:ManualMappingCuration Uberon term should be under ‘dorsal ocellus’ (UBERON:0003161) -FBbt:00004508 eye semapv:crossSpeciesExactMatch UBERON:0000018 semapv:ManualMappingCuration -FBbt:00004510 ommatidium semapv:crossSpeciesExactMatch UBERON:0000971 semapv:ManualMappingCuration -FBbt:00004511 antenna semapv:crossSpeciesExactMatch UBERON:0000972 semapv:ManualMappingCuration -FBbt:00004519 arista semapv:crossSpeciesExactMatch UBERON:6004519 semapv:ManualMappingCuration -FBbt:00004520 mouthpart semapv:crossSpeciesExactMatch UBERON:6004520 semapv:ManualMappingCuration -FBbt:00004521 clypeus semapv:crossSpeciesExactMatch UBERON:6004521 semapv:ManualMappingCuration -FBbt:00004522 labrum semapv:crossSpeciesExactMatch UBERON:0005905 semapv:ManualMappingCuration Uberon term has “insect labium” as EXACT synonym while “labium” is a different part in FBbt -FBbt:00004535 proboscis semapv:crossSpeciesExactMatch UBERON:6004535 semapv:ManualMappingCuration -FBbt:00004540 rostrum semapv:crossSpeciesExactMatch UBERON:6004540 semapv:ManualMappingCuration -FBbt:00004551 adult external thorax semapv:crossSpeciesExactMatch UBERON:6004551 semapv:ManualMappingCuration -FBbt:00004552 tergum semapv:crossSpeciesExactMatch UBERON:6004552 semapv:ManualMappingCuration -FBbt:00004557 sternum semapv:crossSpeciesExactMatch UBERON:0003130 semapv:ManualMappingCuration -FBbt:00004578 adult external mesothorax semapv:crossSpeciesExactMatch UBERON:6004578 semapv:ManualMappingCuration -FBbt:00004580 mesothoracic tergum semapv:crossSpeciesExactMatch UBERON:6004580 semapv:ManualMappingCuration -FBbt:00004640 leg semapv:crossSpeciesExactMatch UBERON:0005895 semapv:ManualMappingCuration -FBbt:00004642 tibia semapv:crossSpeciesExactMatch UBERON:0003131 semapv:ManualMappingCuration -FBbt:00004646 tarsal segment semapv:crossSpeciesExactMatch UBERON:6004646 semapv:ManualMappingCuration -FBbt:00004648 metatarsus semapv:crossSpeciesExactMatch UBERON:6004648 semapv:ManualMappingCuration -FBbt:00004663 prothoracic leg semapv:crossSpeciesExactMatch UBERON:6004663 semapv:ManualMappingCuration -FBbt:00004668 prothoracic tarsal segment semapv:crossSpeciesExactMatch UBERON:6004668 semapv:ManualMappingCuration -FBbt:00004670 prothoracic metatarsus semapv:crossSpeciesExactMatch UBERON:6004670 semapv:ManualMappingCuration -FBbt:00004729 wing semapv:crossSpeciesExactMatch UBERON:0000984 semapv:ManualMappingCuration -FBbt:00004751 wing vein semapv:crossSpeciesExactMatch UBERON:0003194 semapv:ManualMappingCuration -FBbt:00004783 haltere semapv:crossSpeciesExactMatch UBERON:0000987 semapv:ManualMappingCuration -FBbt:00004788 adult external abdomen semapv:crossSpeciesExactMatch UBERON:6004788 semapv:ManualMappingCuration -FBbt:00004823 analia semapv:crossSpeciesExactMatch UBERON:6004823 semapv:ManualMappingCuration -FBbt:00004824 female analia semapv:crossSpeciesExactMatch UBERON:6004824 semapv:ManualMappingCuration -FBbt:00004825 male analia semapv:crossSpeciesExactMatch UBERON:6004825 semapv:ManualMappingCuration -FBbt:00004850 phallus semapv:crossSpeciesExactMatch UBERON:0008811 semapv:ManualMappingCuration -FBbt:00004856 organ system semapv:crossSpeciesExactMatch UBERON:0000467 semapv:ManualMappingCuration -FBbt:00004857 reproductive system semapv:crossSpeciesExactMatch UBERON:0000990 semapv:ManualMappingCuration -FBbt:00004864 female reproductive system semapv:crossSpeciesExactMatch UBERON:0000474 semapv:ManualMappingCuration -FBbt:00004865 ovary semapv:crossSpeciesExactMatch UBERON:0000992 semapv:ManualMappingCuration -FBbt:00004894 egg chamber semapv:crossSpeciesExactMatch UBERON:0003199 semapv:ManualMappingCuration -FBbt:00004921 spermathecum semapv:crossSpeciesExactMatch UBERON:0000994 semapv:ManualMappingCuration -FBbt:00004924 uterus semapv:crossSpeciesCloseMatch UBERON:0006834 semapv:ManualMappingCuration Debatable: The fly uterus is the site of egg fertilisation, not of embryo development (oviposition happens quickly after fertilization, so not a lot of developpment occurs while the egg is still in the uterus) -FBbt:00004927 male reproductive system semapv:crossSpeciesExactMatch UBERON:0000079 semapv:ManualMappingCuration -FBbt:00004928 testis semapv:crossSpeciesExactMatch UBERON:0000473 semapv:ManualMappingCuration -FBbt:00004958 seminal vesicle semapv:crossSpeciesExactMatch UBERON:0006868 semapv:ManualMappingCuration -FBbt:00004969 integumentary system semapv:crossSpeciesExactMatch UBERON:0002416 semapv:ManualMappingCuration -FBbt:00004970 cuticle semapv:crossSpeciesExactMatch UBERON:0001001 semapv:ManualMappingCuration -FBbt:00004973 exocuticle semapv:crossSpeciesExactMatch UBERON:0003201 semapv:ManualMappingCuration -FBbt:00004974 endocuticle semapv:crossSpeciesExactMatch UBERON:0003202 semapv:ManualMappingCuration Conflicting definition (inner layer in Uberon; middle layer in FBbt) -FBbt:00004979 trichome semapv:crossSpeciesExactMatch UBERON:6004979 semapv:ManualMappingCuration -FBbt:00004983 embryonic/larval cuticle semapv:crossSpeciesExactMatch UBERON:6004983 semapv:ManualMappingCuration -FBbt:00004986 third instar larval cuticle semapv:crossSpeciesExactMatch UBERON:6004986 semapv:ManualMappingCuration -FBbt:00004987 puparium cuticle semapv:crossSpeciesExactMatch UBERON:0018656 semapv:ManualMappingCuration -FBbt:00004993 epidermis semapv:crossSpeciesExactMatch UBERON:0007376 semapv:ManualMappingCuration -FBbt:00005023 imaginal precursor semapv:crossSpeciesExactMatch UBERON:6005023 semapv:ManualMappingCuration -FBbt:00005024 tracheal system semapv:crossSpeciesExactMatch UBERON:0005155 semapv:ManualMappingCuration -FBbt:00005036 tracheal pit semapv:crossSpeciesExactMatch UBERON:6005036 semapv:ManualMappingCuration -FBbt:00005037 tracheal primordium semapv:crossSpeciesExactMatch UBERON:6005037 semapv:ManualMappingCuration -FBbt:00005043 trachea semapv:crossSpeciesExactMatch UBERON:6005043 semapv:ManualMappingCuration -FBbt:00005054 spiracle semapv:crossSpeciesExactMatch UBERON:6005054 semapv:ManualMappingCuration -FBbt:00005055 digestive system semapv:crossSpeciesExactMatch UBERON:0001007 semapv:ManualMappingCuration -FBbt:00005056 excretory system semapv:crossSpeciesExactMatch UBERON:0001008 semapv:ManualMappingCuration -FBbt:00005057 circulatory system semapv:crossSpeciesExactMatch UBERON:0009054 semapv:ManualMappingCuration -FBbt:00005060 hemocoel semapv:crossSpeciesExactMatch UBERON:0002323 semapv:ManualMappingCuration -FBbt:00005061 hemolymph semapv:crossSpeciesExactMatch UBERON:0001011 semapv:ManualMappingCuration -FBbt:00005066 fat body semapv:crossSpeciesExactMatch UBERON:0003917 semapv:ManualMappingCuration Uberon definition makes it a single gland localized dorsally to the gut; FBbt definition makes it distributed throughout the body; and not sure it's correct to define it as a gland -FBbt:00005068 endocrine system semapv:crossSpeciesExactMatch UBERON:0000949 semapv:ManualMappingCuration -FBbt:00005093 nervous system semapv:crossSpeciesExactMatch UBERON:0001016 semapv:ManualMappingCuration -FBbt:00005094 central nervous system semapv:crossSpeciesExactMatch UBERON:0001017 semapv:ManualMappingCuration -FBbt:00005095 brain semapv:crossSpeciesExactMatch UBERON:0000955 semapv:ManualMappingCuration -FBbt:00005096 stomatogastric nervous system semapv:crossSpeciesExactMatch UBERON:6005096 semapv:ManualMappingCuration -FBbt:00005097 ventral nerve cord semapv:crossSpeciesExactMatch UBERON:0000934 semapv:ManualMappingCuration -FBbt:00005098 peripheral nervous system semapv:crossSpeciesExactMatch UBERON:0000010 semapv:ManualMappingCuration -FBbt:00005099 neuron projection bundle semapv:crossSpeciesExactMatch UBERON:0000122 semapv:ManualMappingCuration -FBbt:00005100 tract semapv:crossSpeciesExactMatch UBERON:0001018 semapv:ManualMappingCuration -FBbt:00005105 nerve semapv:crossSpeciesExactMatch UBERON:0001021 semapv:ManualMappingCuration -FBbt:00005136 sensory nerve semapv:crossSpeciesExactMatch UBERON:0001027 semapv:ManualMappingCuration -FBbt:00005139 neuropil semapv:crossSpeciesExactMatch UBERON:0002606 semapv:ManualMappingCuration -FBbt:00005155 sense organ semapv:crossSpeciesExactMatch UBERON:0000020 semapv:ManualMappingCuration -FBbt:00005157 chemosensory sensory organ semapv:crossSpeciesExactMatch UBERON:0000005 semapv:ManualMappingCuration -FBbt:00005158 olfactory sensory organ semapv:crossSpeciesExactMatch UBERON:0002268 semapv:ManualMappingCuration -FBbt:00005159 gustatory sensory organ semapv:crossSpeciesExactMatch UBERON:0003212 semapv:ManualMappingCuration -FBbt:00005162 photoreceptor semapv:crossSpeciesExactMatch UBERON:0000970 semapv:ManualMappingCuration -FBbt:00005168 external sensory organ semapv:crossSpeciesExactMatch UBERON:6005168 semapv:ManualMappingCuration -FBbt:00005177 chaeta semapv:crossSpeciesExactMatch UBERON:6005177 semapv:ManualMappingCuration -FBbt:00005215 chordotonal organ semapv:crossSpeciesExactMatch UBERON:0001038 semapv:ManualMappingCuration -FBbt:00005317 gastrula embryo semapv:crossSpeciesExactMatch UBERON:0004734 semapv:ManualMappingCuration marked as deprecated in FBbt (but without suggested replacement) -FBbt:00005333 late embryo semapv:crossSpeciesExactMatch UBERON:0000323 semapv:ManualMappingCuration -FBbt:00005338 second instar larva semapv:crossSpeciesExactMatch UBERON:0018382 semapv:ManualMappingCuration marked as deprecated in FBbt (but without suggested replacement) -FBbt:00005378 wing margin semapv:crossSpeciesExactMatch UBERON:6005378 semapv:ManualMappingCuration -FBbt:00005379 foregut semapv:crossSpeciesExactMatch UBERON:0001041 semapv:ManualMappingCuration -FBbt:00005380 pharynx semapv:crossSpeciesExactMatch UBERON:6005380 semapv:ManualMappingCuration -FBbt:00005382 salivary gland semapv:crossSpeciesExactMatch UBERON:0001044 semapv:ManualMappingCuration -FBbt:00005383 midgut semapv:crossSpeciesExactMatch UBERON:0001045 semapv:ManualMappingCuration -FBbt:00005384 hindgut semapv:crossSpeciesExactMatch UBERON:0001046 semapv:ManualMappingCuration -FBbt:00005386 glomerulus semapv:crossSpeciesExactMatch UBERON:0001047 semapv:ManualMappingCuration -FBbt:00005393 embryonic/larval integumentary system semapv:crossSpeciesExactMatch UBERON:6005393 semapv:ManualMappingCuration -FBbt:00005396 adult integumentary system semapv:crossSpeciesExactMatch UBERON:6005396 semapv:ManualMappingCuration -FBbt:00005426 anlage semapv:crossSpeciesExactMatch UBERON:0007688 semapv:ManualMappingCuration -FBbt:00005427 ectoderm anlage semapv:crossSpeciesExactMatch UBERON:6005427 semapv:ManualMappingCuration -FBbt:00005461 circulatory system primordium semapv:crossSpeciesExactMatch UBERON:6005461 semapv:ManualMappingCuration -FBbt:00005467 lymph gland primordium semapv:crossSpeciesExactMatch UBERON:6005467 semapv:ManualMappingCuration -FBbt:00005495 primordium semapv:crossSpeciesExactMatch UBERON:0001048 semapv:ManualMappingCuration -FBbt:00005514 clypeo-labral disc primordium semapv:crossSpeciesExactMatch UBERON:6005514 semapv:ManualMappingCuration -FBbt:00005526 dorsal epidermis primordium semapv:crossSpeciesExactMatch UBERON:6005526 semapv:ManualMappingCuration -FBbt:00005533 ventral epidermis primordium semapv:crossSpeciesExactMatch UBERON:6005533 semapv:ManualMappingCuration -FBbt:00005538 clypeo-labral primordium semapv:crossSpeciesExactMatch UBERON:6005538 semapv:ManualMappingCuration -FBbt:00005558 ventral ectoderm semapv:crossSpeciesExactMatch UBERON:6005558 semapv:ManualMappingCuration -FBbt:00005569 presumptive embryonic/larval tracheal system semapv:crossSpeciesExactMatch UBERON:6005569 semapv:ManualMappingCuration -FBbt:00005756 rectum semapv:crossSpeciesExactMatch UBERON:0006866 semapv:ManualMappingCuration -FBbt:00005757 neurohemal organ semapv:crossSpeciesExactMatch UBERON:0001053 semapv:ManualMappingCuration -FBbt:00005786 Malpighian tubule semapv:crossSpeciesExactMatch UBERON:0001054 semapv:ManualMappingCuration -FBbt:00005799 corpus cardiacum semapv:crossSpeciesExactMatch UBERON:0001056 semapv:ManualMappingCuration -FBbt:00005800 corpus allatum semapv:crossSpeciesExactMatch UBERON:0001057 semapv:ManualMappingCuration -FBbt:00005801 mushroom body semapv:crossSpeciesExactMatch UBERON:0001058 semapv:ManualMappingCuration -FBbt:00005802 pars intercerebralis semapv:crossSpeciesExactMatch UBERON:0001059 semapv:ManualMappingCuration -FBbt:00005805 Bolwig organ semapv:crossSpeciesExactMatch UBERON:6005805 semapv:ManualMappingCuration -FBbt:00005811 articulation semapv:crossSpeciesExactMatch UBERON:0004905 semapv:ManualMappingCuration -FBbt:00005830 Bolwig organ primordium semapv:crossSpeciesExactMatch UBERON:6005830 semapv:ManualMappingCuration -FBbt:00005831 dorsal imaginal tissue semapv:crossSpeciesExactMatch UBERON:6005831 semapv:ManualMappingCuration -FBbt:00005835 extraembryonic structure semapv:crossSpeciesExactMatch UBERON:0000478 semapv:ManualMappingCuration -FBbt:00005913 arista lateral semapv:crossSpeciesExactMatch UBERON:6005913 semapv:ManualMappingCuration -FBbt:00006011 pharate adult semapv:crossSpeciesExactMatch UBERON:6006011 semapv:ManualMappingCuration -FBbt:00006032 mesothoracic tergum primordium semapv:crossSpeciesExactMatch UBERON:6006032 semapv:ManualMappingCuration -FBbt:00007000 appendage semapv:crossSpeciesExactMatch UBERON:0000026 semapv:ManualMappingCuration -FBbt:00007001 anatomical structure semapv:crossSpeciesExactMatch UBERON:0000061 semapv:ManualMappingCuration -FBbt:00007003 portion of tissue semapv:crossSpeciesExactMatch UBERON:0000479 semapv:ManualMappingCuration -FBbt:00007004 male organism semapv:crossSpeciesExactMatch UBERON:0003101 semapv:ManualMappingCuration -FBbt:00007005 epithelium semapv:crossSpeciesExactMatch UBERON:0000483 semapv:ManualMappingCuration -FBbt:00007006 developing material anatomical entity semapv:crossSpeciesExactMatch UBERON:0005423 semapv:ManualMappingCuration -FBbt:00007009 organism subdivision semapv:crossSpeciesExactMatch UBERON:0000475 semapv:ManualMappingCuration -FBbt:00007010 multi-tissue structure semapv:crossSpeciesExactMatch UBERON:0000481 semapv:ManualMappingCuration -FBbt:00007011 female organism semapv:crossSpeciesExactMatch UBERON:0003100 semapv:ManualMappingCuration -FBbt:00007013 acellular anatomical structure semapv:crossSpeciesExactMatch UBERON:0000476 semapv:ManualMappingCuration -FBbt:00007015 immaterial anatomical entity semapv:crossSpeciesExactMatch UBERON:0000466 semapv:ManualMappingCuration -FBbt:00007016 material anatomical entity semapv:crossSpeciesExactMatch UBERON:0000465 semapv:ManualMappingCuration -FBbt:00007017 anatomical space semapv:crossSpeciesExactMatch UBERON:0000464 semapv:ManualMappingCuration -FBbt:00007018 appendage segment semapv:crossSpeciesExactMatch UBERON:0010758 semapv:ManualMappingCuration -FBbt:00007019 portion of organism substance semapv:crossSpeciesExactMatch UBERON:0000463 semapv:ManualMappingCuration -FBbt:00007020 metatarsus of male prothoracic leg semapv:crossSpeciesExactMatch UBERON:6007020 semapv:ManualMappingCuration -FBbt:00007027 cuboidal/columnar epithelium semapv:crossSpeciesExactMatch UBERON:0000485 semapv:ManualMappingCuration -FBbt:00007045 trunk ectoderm semapv:crossSpeciesExactMatch UBERON:6007045 semapv:ManualMappingCuration -FBbt:00007060 multi-cell-component structure semapv:crossSpeciesExactMatch UBERON:0005162 semapv:ManualMappingCuration -FBbt:00007070 embryonic/larval posterior inferior protocerebrum semapv:crossSpeciesExactMatch UBERON:6007070 semapv:ManualMappingCuration -FBbt:00007091 subperineurial glial sheath semapv:crossSpeciesCloseMatch UBERON:0000202 semapv:ManualMappingCuration Debatable: the subperineurial glia does act “like” a BBB but is it enough to make the two terms equivalent? -FBbt:00007116 presumptive embryonic/larval system semapv:crossSpeciesExactMatch UBERON:6007116 semapv:ManualMappingCuration -FBbt:00007145 adult protocerebrum semapv:crossSpeciesExactMatch UBERON:6007145 semapv:ManualMappingCuration -FBbt:00007149 segment of antenna semapv:crossSpeciesExactMatch UBERON:6007149 semapv:ManualMappingCuration -FBbt:00007150 segment of leg semapv:crossSpeciesExactMatch UBERON:6007150 semapv:ManualMappingCuration -FBbt:00007152 sensillum semapv:crossSpeciesExactMatch UBERON:0002536 semapv:ManualMappingCuration -FBbt:00007229 cell cluster organ semapv:crossSpeciesExactMatch UBERON:0010001 semapv:ManualMappingCuration -FBbt:00007230 compound cell cluster organ semapv:crossSpeciesExactMatch UBERON:0014732 semapv:ManualMappingCuration -FBbt:00007231 external sensillum semapv:crossSpeciesExactMatch UBERON:6007231 semapv:ManualMappingCuration -FBbt:00007232 eo-type sensillum semapv:crossSpeciesExactMatch UBERON:6007232 semapv:ManualMappingCuration -FBbt:00007233 internal sensillum semapv:crossSpeciesExactMatch UBERON:6007233 semapv:ManualMappingCuration -FBbt:00007240 embryonic/larval sensillum semapv:crossSpeciesExactMatch UBERON:6007240 semapv:ManualMappingCuration -FBbt:00007242 embryonic/larval head sensillum semapv:crossSpeciesExactMatch UBERON:6007242 semapv:ManualMappingCuration -FBbt:00007245 cuticular specialization semapv:crossSpeciesExactMatch UBERON:6007245 semapv:ManualMappingCuration -FBbt:00007248 chorionic specialization semapv:crossSpeciesExactMatch UBERON:6007248 semapv:ManualMappingCuration -FBbt:00007276 anatomical group semapv:crossSpeciesExactMatch UBERON:0034923 semapv:ManualMappingCuration -FBbt:00007277 anatomical cluster semapv:crossSpeciesExactMatch UBERON:0000477 semapv:ManualMappingCuration -FBbt:00007278 non-connected functional system semapv:crossSpeciesExactMatch UBERON:0015203 semapv:ManualMappingCuration -FBbt:00007280 embryonic/larval head sense organ semapv:crossSpeciesExactMatch UBERON:6007280 semapv:ManualMappingCuration -FBbt:00007284 region of integument semapv:crossSpeciesExactMatch UBERON:6007284 semapv:ManualMappingCuration -FBbt:00007285 segmental subdivision of integument semapv:crossSpeciesExactMatch UBERON:6007285 semapv:ManualMappingCuration -FBbt:00007288 integumentary specialization semapv:crossSpeciesExactMatch UBERON:6007288 semapv:ManualMappingCuration -FBbt:00007289 tagmatic subdivision of integument semapv:crossSpeciesExactMatch UBERON:6007289 semapv:ManualMappingCuration -FBbt:00007330 organ system subdivision semapv:crossSpeciesExactMatch UBERON:0011216 semapv:ManualMappingCuration -FBbt:00007331 segmental subdivision of organ system semapv:crossSpeciesExactMatch UBERON:6007331 semapv:ManualMappingCuration -FBbt:00007373 internal sense organ semapv:crossSpeciesExactMatch UBERON:6007373 semapv:ManualMappingCuration -FBbt:00007410 tracheal lumen semapv:crossSpeciesExactMatch UBERON:0006832 semapv:ManualMappingCuration -FBbt:00007424 epithelial furrow semapv:crossSpeciesExactMatch UBERON:6007424 semapv:ManualMappingCuration -FBbt:00007474 epithelial tube semapv:crossSpeciesExactMatch UBERON:0003914 semapv:ManualMappingCuration -FBbt:00007692 sensory system semapv:crossSpeciesExactMatch UBERON:0001032 semapv:ManualMappingCuration -FBbt:00016022 abdominal histoblast primordium semapv:crossSpeciesExactMatch UBERON:6016022 semapv:ManualMappingCuration -FBbt:00040003 non-connected developing system semapv:crossSpeciesExactMatch UBERON:6040003 semapv:ManualMappingCuration -FBbt:00040005 synaptic neuropil semapv:crossSpeciesExactMatch UBERON:6040005 semapv:ManualMappingCuration -FBbt:00040007 synaptic neuropil domain semapv:crossSpeciesExactMatch UBERON:6040007 semapv:ManualMappingCuration -FBbt:00041000 synaptic neuropil block semapv:crossSpeciesExactMatch UBERON:6041000 semapv:ManualMappingCuration -FBbt:00047153 anus semapv:crossSpeciesExactMatch UBERON:0001245 semapv:ManualMappingCuration -FBbt:00047166 gut epithelium semapv:crossSpeciesExactMatch UBERON:0003929 semapv:ManualMappingCuration -FBbt:00057001 anterior-posterior subdivision of organism semapv:crossSpeciesExactMatch UBERON:6057001 semapv:ManualMappingCuration -FBbt:00058291 dorsal vessel semapv:crossSpeciesExactMatch UBERON:0015231 semapv:ManualMappingCuration -FBbt:00100152 row semapv:crossSpeciesExactMatch UBERON:0034926 semapv:ManualMappingCuration -FBbt:00100153 sensillum row semapv:crossSpeciesExactMatch UBERON:6100153 semapv:ManualMappingCuration -FBbt:00100313 multicellular structure semapv:crossSpeciesExactMatch UBERON:0010000 semapv:ManualMappingCuration -FBbt:00100314 duct semapv:crossSpeciesExactMatch UBERON:0000058 semapv:ManualMappingCuration -FBbt:00100315 gut section semapv:crossSpeciesExactMatch UBERON:0004921 semapv:ManualMappingCuration -FBbt:00100316 diverticulum of gut semapv:crossSpeciesExactMatch UBERON:0009854 semapv:ManualMappingCuration -FBbt:00100317 gland semapv:crossSpeciesExactMatch UBERON:0002530 semapv:ManualMappingCuration -FBbt:00110636 adult cerebral ganglion semapv:crossSpeciesExactMatch UBERON:6110636 semapv:ManualMappingCuration -FBbt:00110746 presumptive prothoracic metatarsus semapv:crossSpeciesExactMatch UBERON:6110746 semapv:ManualMappingCuration -FBbt:00110811 presumptive arista semapv:crossSpeciesExactMatch UBERON:6110811 semapv:ManualMappingCuration -FBbt:10000000 anatomical entity semapv:crossSpeciesExactMatch UBERON:0001062 semapv:ManualMappingCuration +subject_id subject_label predicate_id object_id object_label mapping_justification comment +FBbt:00000001 organism semapv:crossSpeciesExactMatch UBERON:0000468 multicellular organism semapv:ManualMappingCuration +FBbt:00000002 tagma semapv:crossSpeciesExactMatch UBERON:6000002 arthropod tagma semapv:ManualMappingCuration +FBbt:00000003 segment semapv:crossSpeciesExactMatch UBERON:0000914 organismal segment semapv:ManualMappingCuration +FBbt:00000004 head semapv:crossSpeciesExactMatch UBERON:6000004 panarthropod head semapv:ManualMappingCuration Somewhat redundant with ‘insect {adult/larval} head’ +FBbt:00000005 ocular segment semapv:crossSpeciesExactMatch UBERON:6000005 insect ocular segment semapv:ManualMappingCuration +FBbt:00000006 head segment semapv:crossSpeciesExactMatch UBERON:6000006 insect head segment semapv:ManualMappingCuration +FBbt:00000007 procephalic segment semapv:crossSpeciesExactMatch UBERON:6000007 procephalic segment semapv:ManualMappingCuration Uberon term should probably be named ‘insect procephalic segment’? +FBbt:00000008 labral segment semapv:crossSpeciesExactMatch UBERON:6000008 labral segment semapv:ManualMappingCuration Uberon term should probably be named ‘insect labral segment’? +FBbt:00000009 antennal segment semapv:crossSpeciesExactMatch UBERON:6000009 antennal segment semapv:ManualMappingCuration +FBbt:00000011 gnathal segment semapv:crossSpeciesExactMatch UBERON:6000011 insect gnathal segment semapv:ManualMappingCuration +FBbt:00000014 labial segment semapv:crossSpeciesExactMatch UBERON:6000014 insect labial segment semapv:ManualMappingCuration +FBbt:00000015 thorax semapv:crossSpeciesExactMatch UBERON:6000015 insect thorax semapv:ManualMappingCuration +FBbt:00000016 thoracic segment semapv:crossSpeciesExactMatch UBERON:6000016 insect thoracic segment semapv:ManualMappingCuration +FBbt:00000017 prothoracic segment semapv:crossSpeciesExactMatch UBERON:6000017 insect prothoracic segment semapv:ManualMappingCuration +FBbt:00000018 mesothoracic segment semapv:crossSpeciesExactMatch UBERON:6000018 insect mesothoracic segment semapv:ManualMappingCuration +FBbt:00000019 metathoracic segment semapv:crossSpeciesExactMatch UBERON:6000019 insect metathoracic segment semapv:ManualMappingCuration +FBbt:00000020 abdomen semapv:crossSpeciesExactMatch UBERON:6000020 insect abdomen semapv:ManualMappingCuration +FBbt:00000021 abdominal segment semapv:crossSpeciesExactMatch UBERON:6000021 insect abdominal segment semapv:ManualMappingCuration +FBbt:00000029 abdominal segment 8 semapv:crossSpeciesExactMatch UBERON:6000029 insect abdominal segment 8 semapv:ManualMappingCuration Why does Uberon only have terms for segments 8 and 9? +FBbt:00000030 abdominal segment 9 semapv:crossSpeciesExactMatch UBERON:6000030 insect abdominal segment 9 semapv:ManualMappingCuration Likewise +FBbt:00000038 chorion semapv:crossSpeciesExactMatch UBERON:0000920 egg chorion semapv:ManualMappingCuration +FBbt:00000042 vitelline membrane semapv:crossSpeciesExactMatch UBERON:0003125 vitelline membrane semapv:ManualMappingCuration +FBbt:00000046 dorsal appendage semapv:crossSpeciesExactMatch UBERON:6000046 insect dorsal appendage semapv:ManualMappingCuration +FBbt:00000052 embryo semapv:crossSpeciesExactMatch UBERON:0000922 embryo semapv:ManualMappingCuration +FBbt:00000093 ventral midline of embryo semapv:crossSpeciesExactMatch UBERON:0009571 ventral midline semapv:ManualMappingCuration +FBbt:00000095 amnioserosa semapv:crossSpeciesExactMatch UBERON:0010302 amnioserosa semapv:ManualMappingCuration Uberon term commented as “may be obsoleted once added to the insect ontology” +FBbt:00000096 ventral furrow semapv:crossSpeciesExactMatch UBERON:6000096 insect ventral furrow semapv:ManualMappingCuration +FBbt:00000097 cephalic furrow semapv:crossSpeciesExactMatch UBERON:6000097 insect cephalic furrow semapv:ManualMappingCuration +FBbt:00000104 mesoderm anlage semapv:crossSpeciesExactMatch UBERON:6000104 insect mesoderm anlage semapv:ManualMappingCuration +FBbt:00000110 germ layer semapv:crossSpeciesExactMatch UBERON:0000923 germ layer semapv:ManualMappingCuration +FBbt:00000111 ectoderm semapv:crossSpeciesExactMatch UBERON:0000924 ectoderm semapv:ManualMappingCuration +FBbt:00000112 dorsal ectoderm semapv:crossSpeciesExactMatch UBERON:6000112 insect dorsal ectoderm semapv:ManualMappingCuration +FBbt:00000119 anterior ectoderm semapv:crossSpeciesExactMatch UBERON:6000119 insect anterior ectoderm semapv:ManualMappingCuration +FBbt:00000123 amnioproctodeal invagination semapv:crossSpeciesExactMatch UBERON:0000931 proctodeum semapv:ManualMappingCuration +FBbt:00000125 endoderm semapv:crossSpeciesExactMatch UBERON:0000925 endoderm semapv:ManualMappingCuration +FBbt:00000126 mesoderm semapv:crossSpeciesExactMatch UBERON:0000926 mesoderm semapv:ManualMappingCuration +FBbt:00000128 trunk mesoderm semapv:crossSpeciesExactMatch UBERON:6000128 insect trunk mesoderm semapv:ManualMappingCuration +FBbt:00000130 visceral mesoderm semapv:crossSpeciesExactMatch UBERON:6000130 insect visceral mesoderm semapv:ManualMappingCuration +FBbt:00000136 mesectoderm semapv:crossSpeciesExactMatch UBERON:0000927 mesectoderm semapv:ManualMappingCuration +FBbt:00000137 embryonic tagma semapv:crossSpeciesExactMatch UBERON:6000137 embryonic tagma semapv:ManualMappingCuration +FBbt:00000154 embryonic segment semapv:crossSpeciesExactMatch UBERON:6000154 insect embryonic segment semapv:ManualMappingCuration +FBbt:00000155 embryonic head semapv:crossSpeciesExactMatch UBERON:0008816 embryonic head semapv:ManualMappingCuration +FBbt:00000157 embryonic head segment semapv:crossSpeciesExactMatch UBERON:6000157 insect embryonic head segment semapv:ManualMappingCuration +FBbt:00000158 embryonic procephalic segment semapv:crossSpeciesExactMatch UBERON:6000158 insect embryonic procephalic segment semapv:ManualMappingCuration +FBbt:00000160 embryonic antennal segment semapv:crossSpeciesExactMatch UBERON:6000160 insect embryonic antennal segment semapv:ManualMappingCuration +FBbt:00000162 embryonic gnathal segment semapv:crossSpeciesExactMatch UBERON:6000162 insect embryonic gnathal segment semapv:ManualMappingCuration +FBbt:00000165 embryonic labial segment semapv:crossSpeciesExactMatch UBERON:6000165 insect embryonic labial segment semapv:ManualMappingCuration +FBbt:00000166 embryonic thorax semapv:crossSpeciesExactMatch UBERON:6000166 insect embryonic thorax semapv:ManualMappingCuration +FBbt:00000167 embryonic thoracic segment semapv:crossSpeciesExactMatch UBERON:6000167 insect embryonic thoracic segment semapv:ManualMappingCuration +FBbt:00000168 embryonic prothoracic segment semapv:crossSpeciesExactMatch UBERON:6000168 insect embryonic prothoracic segment semapv:ManualMappingCuration +FBbt:00000169 embryonic mesothoracic segment semapv:crossSpeciesExactMatch UBERON:6000169 insect embryonic mesothoracic segment semapv:ManualMappingCuration +FBbt:00000170 embryonic metathoracic segment semapv:crossSpeciesExactMatch UBERON:6000170 insect embryonic metathoracic segment semapv:ManualMappingCuration +FBbt:00000171 embryonic abdomen semapv:crossSpeciesExactMatch UBERON:6000171 insect embryonic abdomen semapv:ManualMappingCuration +FBbt:00000172 embryonic abdominal segment semapv:crossSpeciesExactMatch UBERON:6000172 insect embryonic abdominal segment semapv:ManualMappingCuration +FBbt:00000180 embryonic abdominal segment 8 semapv:crossSpeciesExactMatch UBERON:6000180 insect embryonic abdominal segment 8 semapv:ManualMappingCuration +FBbt:00000181 embryonic abdominal segment 9 semapv:crossSpeciesExactMatch UBERON:6000181 insect embryonic abdominal segment 9 semapv:ManualMappingCuration +FBbt:00000186 embryonic optic lobe primordium semapv:crossSpeciesExactMatch UBERON:6000186 insect embryonic optic lobe primordium semapv:ManualMappingCuration +FBbt:00000439 stomodeum semapv:crossSpeciesExactMatch UBERON:0000930 stomodeum semapv:ManualMappingCuration +FBbt:00001055 presumptive embryonic/larval nervous system semapv:crossSpeciesExactMatch UBERON:6001055 insect presumptive embryonic/larval nervous system semapv:ManualMappingCuration +FBbt:00001056 presumptive embryonic/larval central nervous system semapv:crossSpeciesExactMatch UBERON:6001056 insect presumptive embryonic/larval central nervous system semapv:ManualMappingCuration +FBbt:00001057 neurogenic region semapv:crossSpeciesExactMatch UBERON:0002346 neurectoderm semapv:ManualMappingCuration +FBbt:00001059 visual primordium semapv:crossSpeciesExactMatch UBERON:6001059 insect visual primordium semapv:ManualMappingCuration +FBbt:00001060 embryonic brain semapv:crossSpeciesExactMatch UBERON:6001060 insect embryonic brain semapv:ManualMappingCuration +FBbt:00001135 proneural cluster semapv:crossSpeciesExactMatch UBERON:6001135 insect proneural cluster semapv:ManualMappingCuration +FBbt:00001648 embryonic imaginal tissue semapv:crossSpeciesExactMatch UBERON:6001648 insect embryonic imaginal precursor semapv:ManualMappingCuration +FBbt:00001649 imaginal disc primordium semapv:crossSpeciesExactMatch UBERON:6001649 insect imaginal disc primordium semapv:ManualMappingCuration +FBbt:00001650 labial disc primordium semapv:crossSpeciesExactMatch UBERON:6001650 insect labial disc primordium semapv:ManualMappingCuration +FBbt:00001652 eye-antennal disc primordium semapv:crossSpeciesExactMatch UBERON:6001652 insect eye-antennal disc primordium semapv:ManualMappingCuration +FBbt:00001653 dorsal thoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001653 insect dorsal thoracic disc primordium semapv:ManualMappingCuration +FBbt:00001655 dorsal mesothoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001655 insect dorsal mesothoracic disc primordium semapv:ManualMappingCuration +FBbt:00001656 dorsal metathoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001656 insect dorsal metathoracic disc primordium semapv:ManualMappingCuration +FBbt:00001657 ventral thoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001657 insect ventral thoracic disc primordium semapv:ManualMappingCuration +FBbt:00001658 ventral prothoracic disc primordium semapv:crossSpeciesExactMatch UBERON:6001658 insect ventral prothoracic disc primordium semapv:ManualMappingCuration +FBbt:00001661 genital disc primordium semapv:crossSpeciesExactMatch UBERON:6001661 insect genital disc primordium semapv:ManualMappingCuration +FBbt:00001662 male genital disc primordium semapv:crossSpeciesExactMatch UBERON:6001662 insect male genital disc primordium semapv:ManualMappingCuration +FBbt:00001663 female genital disc primordium semapv:crossSpeciesExactMatch UBERON:6001663 insect female genital disc primordium semapv:ManualMappingCuration +FBbt:00001664 embryonic/larval circulatory system semapv:crossSpeciesExactMatch UBERON:6001664 insect embryonic/larval circulatory system semapv:ManualMappingCuration +FBbt:00001668 embryonic/larval lymph gland semapv:crossSpeciesExactMatch UBERON:6001668 insect embryonic/larval lymph gland semapv:ManualMappingCuration +FBbt:00001718 retrocerebral complex semapv:crossSpeciesExactMatch UBERON:0012325 retrocerebral complex semapv:ManualMappingCuration Uberon term commented as “will be ceded to arthropod anatomy ontology” +FBbt:00001722 ring gland semapv:crossSpeciesExactMatch UBERON:6001722 insect ring gland semapv:ManualMappingCuration +FBbt:00001727 larva semapv:crossSpeciesExactMatch UBERON:0002548 larva semapv:ManualMappingCuration +FBbt:00001728 larval tagma semapv:crossSpeciesExactMatch UBERON:6001728 insect larval tagma semapv:ManualMappingCuration +FBbt:00001729 larval segment semapv:crossSpeciesExactMatch UBERON:6001729 insect larval segment semapv:ManualMappingCuration +FBbt:00001730 larval head semapv:crossSpeciesExactMatch UBERON:6001730 insect larval head semapv:ManualMappingCuration +FBbt:00001731 larval ocular segment semapv:crossSpeciesExactMatch UBERON:6001731 insect larval ocular segment semapv:ManualMappingCuration +FBbt:00001732 larval head segment semapv:crossSpeciesExactMatch UBERON:6001732 insect larval head segment semapv:ManualMappingCuration +FBbt:00001733 larval procephalic segment semapv:crossSpeciesExactMatch UBERON:6001733 insect larval procephalic segment semapv:ManualMappingCuration +FBbt:00001734 larval labral segment semapv:crossSpeciesExactMatch UBERON:6001734 insect larval labral segment semapv:ManualMappingCuration +FBbt:00001735 larval antennal segment semapv:crossSpeciesExactMatch UBERON:6001735 insect larval antennal segment semapv:ManualMappingCuration +FBbt:00001737 larval gnathal segment semapv:crossSpeciesExactMatch UBERON:6001737 insect larval gnathal segment semapv:ManualMappingCuration +FBbt:00001740 larval labial segment semapv:crossSpeciesExactMatch UBERON:6001740 insect larval labial segment semapv:ManualMappingCuration +FBbt:00001741 larval thorax semapv:crossSpeciesExactMatch UBERON:6001741 insect larval thorax semapv:ManualMappingCuration +FBbt:00001742 larval thoracic segment semapv:crossSpeciesExactMatch UBERON:6001742 insect larval thoracic segment semapv:ManualMappingCuration +FBbt:00001743 larval prothoracic segment semapv:crossSpeciesExactMatch UBERON:6001743 insect larval prothoracic segment semapv:ManualMappingCuration +FBbt:00001744 larval mesothoracic segment semapv:crossSpeciesExactMatch UBERON:6001744 insect larval mesothoracic segment semapv:ManualMappingCuration +FBbt:00001745 larval metathoracic segment semapv:crossSpeciesExactMatch UBERON:6001745 insect larval metathoracic segment semapv:ManualMappingCuration +FBbt:00001746 larval abdomen semapv:crossSpeciesExactMatch UBERON:6001746 insect larval abdomen semapv:ManualMappingCuration +FBbt:00001747 larval abdominal segment semapv:crossSpeciesExactMatch UBERON:6001747 insect larval abdominal segment semapv:ManualMappingCuration +FBbt:00001755 larval abdominal segment 8 semapv:crossSpeciesExactMatch UBERON:6001755 insect larval abdominal segment 8 semapv:ManualMappingCuration +FBbt:00001756 larval abdominal segment 9 semapv:crossSpeciesExactMatch UBERON:6001756 insect larval abdominal segment 9 semapv:ManualMappingCuration +FBbt:00001760 larval imaginal tissue semapv:crossSpeciesExactMatch UBERON:6001760 insect embryonic/larval imaginal precursor semapv:ManualMappingCuration +FBbt:00001761 imaginal disc semapv:crossSpeciesExactMatch UBERON:0000939 imaginal disc semapv:ManualMappingCuration +FBbt:00001764 labial disc semapv:crossSpeciesExactMatch UBERON:6001764 insect labial disc semapv:ManualMappingCuration +FBbt:00001765 clypeo-labral disc semapv:crossSpeciesExactMatch UBERON:6001765 insect clypeo-labral disc semapv:ManualMappingCuration +FBbt:00001766 eye-antennal disc semapv:crossSpeciesExactMatch UBERON:6001766 insect eye-antennal disc semapv:ManualMappingCuration +FBbt:00001767 antennal disc semapv:crossSpeciesExactMatch UBERON:6001767 insect antennal disc semapv:ManualMappingCuration +FBbt:00001776 dorsal thoracic disc semapv:crossSpeciesExactMatch UBERON:6001776 insect dorsal thoracic disc semapv:ManualMappingCuration +FBbt:00001778 wing disc semapv:crossSpeciesExactMatch UBERON:6001778 insect wing disc semapv:ManualMappingCuration +FBbt:00001779 haltere disc semapv:crossSpeciesExactMatch UBERON:6001779 insect haltere disc semapv:ManualMappingCuration +FBbt:00001780 ventral thoracic disc semapv:crossSpeciesExactMatch UBERON:6001780 insect ventral thoracic disc semapv:ManualMappingCuration +FBbt:00001781 prothoracic leg disc semapv:crossSpeciesExactMatch UBERON:6001781 insect prothoracic leg disc semapv:ManualMappingCuration +FBbt:00001784 genital disc semapv:crossSpeciesExactMatch UBERON:6001784 insect genital disc semapv:ManualMappingCuration +FBbt:00001785 male genital disc semapv:crossSpeciesExactMatch UBERON:6001785 insect male genital disc semapv:ManualMappingCuration +FBbt:00001787 female genital disc semapv:crossSpeciesExactMatch UBERON:6001787 insect female genital disc semapv:ManualMappingCuration +FBbt:00001790 histoblast nest semapv:crossSpeciesExactMatch UBERON:6001790 insect histoblast nest semapv:ManualMappingCuration +FBbt:00001842 embryonic/larval digestive system semapv:crossSpeciesExactMatch UBERON:6001842 insect embryonic/larval digestive system semapv:ManualMappingCuration +FBbt:00001845 cephalopharyngeal skeleton semapv:crossSpeciesExactMatch UBERON:6001845 insect cephalopharyngeal skeleton semapv:ManualMappingCuration +FBbt:00001848 epipharyngeal sclerite semapv:crossSpeciesExactMatch UBERON:6001848 insect epipharyngeal sclerite semapv:ManualMappingCuration +FBbt:00001911 embryonic/larval nervous system semapv:crossSpeciesExactMatch UBERON:6001911 insect embryonic/larval nervous system semapv:ManualMappingCuration +FBbt:00001919 embryonic/larval central nervous system semapv:crossSpeciesExactMatch UBERON:6001919 insect embryonic/larval central nervous system semapv:ManualMappingCuration +FBbt:00001920 embryonic/larval brain semapv:crossSpeciesExactMatch UBERON:6001920 insect embryonic/larval brain semapv:ManualMappingCuration +FBbt:00001925 embryonic/larval protocerebrum semapv:crossSpeciesExactMatch UBERON:6001925 insect embryonic/larval protocerebrum semapv:ManualMappingCuration +FBbt:00001956 optic nerve semapv:crossSpeciesExactMatch UBERON:0004904 neuron projection bundle connecting eye with brain semapv:ManualMappingCuration +FBbt:00002639 embryonic/larval sense organ semapv:crossSpeciesExactMatch UBERON:6002639 insect larval sense organ semapv:ManualMappingCuration +FBbt:00002642 embryonic/larval ocular segment sensillum semapv:crossSpeciesExactMatch UBERON:6002642 insect embryonic/larval ocular segment sensillum semapv:ManualMappingCuration +FBbt:00002952 prepupa semapv:crossSpeciesExactMatch UBERON:0003142 prepupa semapv:ManualMappingCuration +FBbt:00002953 pupa semapv:crossSpeciesExactMatch UBERON:0003143 pupa semapv:ManualMappingCuration +FBbt:00003004 adult semapv:crossSpeciesExactMatch UBERON:0007023 adult organism semapv:ManualMappingCuration +FBbt:00003005 adult tagma semapv:crossSpeciesExactMatch UBERON:6003005 insect adult tagma semapv:ManualMappingCuration +FBbt:00003006 adult segment semapv:crossSpeciesExactMatch UBERON:6003006 insect adult segment semapv:ManualMappingCuration +FBbt:00003007 adult head semapv:crossSpeciesExactMatch UBERON:6003007 insect adult head semapv:ManualMappingCuration +FBbt:00003009 adult head segment semapv:crossSpeciesExactMatch UBERON:6003009 insect adult head segment semapv:ManualMappingCuration +FBbt:00003010 adult procephalic segment semapv:crossSpeciesExactMatch UBERON:6003010 insect adult procephalic segment semapv:ManualMappingCuration +FBbt:00003011 adult labral segment semapv:crossSpeciesExactMatch UBERON:6003011 insect adult labral segment semapv:ManualMappingCuration +FBbt:00003012 adult antennal segment semapv:crossSpeciesExactMatch UBERON:6003012 insect adult antennal segment semapv:ManualMappingCuration +FBbt:00003018 adult thorax semapv:crossSpeciesExactMatch UBERON:6003018 insect adult thorax semapv:ManualMappingCuration +FBbt:00003019 adult thoracic segment semapv:crossSpeciesExactMatch UBERON:6003019 insect adult thoracic segment semapv:ManualMappingCuration +FBbt:00003020 adult prothoracic segment semapv:crossSpeciesExactMatch UBERON:6003020 insect adult prothoracic segment semapv:ManualMappingCuration +FBbt:00003021 adult mesothoracic segment semapv:crossSpeciesExactMatch UBERON:6003021 insect adult mesothoracic segment semapv:ManualMappingCuration +FBbt:00003023 adult abdomen semapv:crossSpeciesExactMatch UBERON:6003023 insect adult abdomen semapv:ManualMappingCuration +FBbt:00003024 adult abdominal segment semapv:crossSpeciesExactMatch UBERON:6003024 insect adult abdominal segment semapv:ManualMappingCuration +FBbt:00003039 adult dorsal trunk semapv:crossSpeciesExactMatch UBERON:6003039 dorsal trunk of insect trachea semapv:ManualMappingCuration +FBbt:00003125 alimentary canal semapv:crossSpeciesExactMatch UBERON:0001555 digestive tract semapv:ManualMappingCuration +FBbt:00003126 adult mouth semapv:crossSpeciesExactMatch UBERON:0000165 mouth semapv:ManualMappingCuration +FBbt:00003154 adult heart semapv:crossSpeciesExactMatch UBERON:0015230 dorsal vessel heart semapv:ManualMappingCuration FBbt is missing a stage-neutral ‘heart’ +FBbt:00003259 adult somatic muscle semapv:crossSpeciesExactMatch UBERON:6003259 insect adult somatic muscle semapv:ManualMappingCuration +FBbt:00003559 adult nervous system semapv:crossSpeciesExactMatch UBERON:6003559 insect adult nervous system semapv:ManualMappingCuration +FBbt:00003623 adult central nervous system semapv:crossSpeciesExactMatch UBERON:6003623 insect adult central nervous system semapv:ManualMappingCuration +FBbt:00003624 adult brain semapv:crossSpeciesExactMatch UBERON:6003624 insect adult brain semapv:ManualMappingCuration +FBbt:00003626 supraesophageal ganglion semapv:crossSpeciesExactMatch UBERON:6003626 insect supraesophageal ganglion semapv:ManualMappingCuration +FBbt:00003627 protocerebrum semapv:crossSpeciesExactMatch UBERON:6003627 insect protocerebrum semapv:ManualMappingCuration +FBbt:00003632 adult central complex semapv:crossSpeciesExactMatch UBERON:6003632 insect adult central complex semapv:ManualMappingCuration +FBbt:00003701 adult optic lobe semapv:crossSpeciesExactMatch UBERON:0006795 arthropod optic lobe semapv:ManualMappingCuration +FBbt:00004114 head sensillum semapv:crossSpeciesExactMatch UBERON:0000963 head sensillum semapv:ManualMappingCuration +FBbt:00004199 lens semapv:crossSpeciesExactMatch UBERON:0000207 compound eye corneal lens semapv:ManualMappingCuration +FBbt:00004200 retina semapv:crossSpeciesExactMatch UBERON:0005388 photoreceptor array semapv:ManualMappingCuration +FBbt:00004208 developing embryonic structure semapv:crossSpeciesExactMatch UBERON:0002050 embryonic structure semapv:ManualMappingCuration +FBbt:00004296 sex comb semapv:crossSpeciesExactMatch UBERON:6004296 insect sex comb semapv:ManualMappingCuration +FBbt:00004340 wing hair semapv:crossSpeciesExactMatch UBERON:6004340 insect wing hair semapv:ManualMappingCuration +FBbt:00004475 sclerite semapv:crossSpeciesExactMatch UBERON:6004475 insect sclerite semapv:ManualMappingCuration +FBbt:00004476 tergite semapv:crossSpeciesExactMatch UBERON:6004476 insect tergite semapv:ManualMappingCuration +FBbt:00004477 sternite semapv:crossSpeciesExactMatch UBERON:6004477 insect sternite semapv:ManualMappingCuration +FBbt:00004481 adult external head semapv:crossSpeciesExactMatch UBERON:6004481 insect adult external head semapv:ManualMappingCuration +FBbt:00004482 head capsule semapv:crossSpeciesExactMatch UBERON:0003153 insect head capsule semapv:ManualMappingCuration +FBbt:00004492 occiput semapv:crossSpeciesExactMatch UBERON:0003155 arthropod occiput semapv:ManualMappingCuration Uberon term commented as “belonging to another ontology but kept for disambiguation purposes” +FBbt:00004505 ocellus semapv:crossSpeciesExactMatch UBERON:0003161 dorsal ocellus semapv:ManualMappingCuration +FBbt:00004506 lateral ocellus semapv:crossSpeciesExactMatch UBERON:0003162 lateral ocellus semapv:ManualMappingCuration +FBbt:00004507 medial ocellus semapv:crossSpeciesExactMatch UBERON:0003211 median eye semapv:ManualMappingCuration Uberon term should be under ‘dorsal ocellus’ (UBERON:0003161) +FBbt:00004508 eye semapv:crossSpeciesExactMatch UBERON:0000018 compound eye semapv:ManualMappingCuration +FBbt:00004510 ommatidium semapv:crossSpeciesExactMatch UBERON:0000971 ommatidium semapv:ManualMappingCuration +FBbt:00004511 antenna semapv:crossSpeciesExactMatch UBERON:0000972 antenna semapv:ManualMappingCuration +FBbt:00004519 arista semapv:crossSpeciesExactMatch UBERON:6004519 insect arista semapv:ManualMappingCuration +FBbt:00004520 mouthpart semapv:crossSpeciesExactMatch UBERON:6004520 insect mouthpart semapv:ManualMappingCuration +FBbt:00004521 clypeus semapv:crossSpeciesExactMatch UBERON:6004521 insect clypeus semapv:ManualMappingCuration +FBbt:00004522 labrum semapv:crossSpeciesExactMatch UBERON:0005905 insect labrum semapv:ManualMappingCuration Uberon term has “insect labium” as EXACT synonym while “labium” is a different part in FBbt +FBbt:00004535 proboscis semapv:crossSpeciesExactMatch UBERON:6004535 insect proboscis semapv:ManualMappingCuration +FBbt:00004540 rostrum semapv:crossSpeciesExactMatch UBERON:6004540 insect basiproboscis semapv:ManualMappingCuration +FBbt:00004551 adult external thorax semapv:crossSpeciesExactMatch UBERON:6004551 insect adult external thorax semapv:ManualMappingCuration +FBbt:00004552 tergum semapv:crossSpeciesExactMatch UBERON:6004552 insect tergum semapv:ManualMappingCuration +FBbt:00004557 sternum semapv:crossSpeciesExactMatch UBERON:0003130 arthropod sternum semapv:ManualMappingCuration +FBbt:00004578 adult external mesothorax semapv:crossSpeciesExactMatch UBERON:6004578 insect adult external mesothorax semapv:ManualMappingCuration +FBbt:00004580 mesothoracic tergum semapv:crossSpeciesExactMatch UBERON:6004580 insect mesothoracic tergum semapv:ManualMappingCuration +FBbt:00004640 leg semapv:crossSpeciesExactMatch UBERON:0005895 insect leg semapv:ManualMappingCuration +FBbt:00004642 tibia semapv:crossSpeciesExactMatch UBERON:0003131 arthropod tibia semapv:ManualMappingCuration +FBbt:00004646 tarsal segment semapv:crossSpeciesExactMatch UBERON:6004646 insect tarsal segment semapv:ManualMappingCuration +FBbt:00004648 metatarsus semapv:crossSpeciesExactMatch UBERON:6004648 insect metatarsus semapv:ManualMappingCuration +FBbt:00004663 prothoracic leg semapv:crossSpeciesExactMatch UBERON:6004663 insect prothoracic leg semapv:ManualMappingCuration +FBbt:00004668 prothoracic tarsal segment semapv:crossSpeciesExactMatch UBERON:6004668 insect prothoracic tarsal segment semapv:ManualMappingCuration +FBbt:00004670 prothoracic metatarsus semapv:crossSpeciesExactMatch UBERON:6004670 insect prothoracic metatarsus semapv:ManualMappingCuration +FBbt:00004729 wing semapv:crossSpeciesExactMatch UBERON:0000984 imaginal disc-derived wing semapv:ManualMappingCuration +FBbt:00004751 wing vein semapv:crossSpeciesExactMatch UBERON:0003194 imaginal disc-derived wing vein semapv:ManualMappingCuration +FBbt:00004783 haltere semapv:crossSpeciesExactMatch UBERON:0000987 haltere semapv:ManualMappingCuration +FBbt:00004788 adult external abdomen semapv:crossSpeciesExactMatch UBERON:6004788 insect adult external abdomen semapv:ManualMappingCuration +FBbt:00004823 analia semapv:crossSpeciesExactMatch UBERON:6004823 insect analia semapv:ManualMappingCuration +FBbt:00004824 female analia semapv:crossSpeciesExactMatch UBERON:6004824 insect female analia semapv:ManualMappingCuration +FBbt:00004825 male analia semapv:crossSpeciesExactMatch UBERON:6004825 insect male analia semapv:ManualMappingCuration +FBbt:00004850 phallus semapv:crossSpeciesExactMatch UBERON:0008811 intromittent organ semapv:ManualMappingCuration +FBbt:00004856 organ system semapv:crossSpeciesExactMatch UBERON:0000467 anatomical system semapv:ManualMappingCuration +FBbt:00004857 reproductive system semapv:crossSpeciesExactMatch UBERON:0000990 reproductive system semapv:ManualMappingCuration +FBbt:00004864 female reproductive system semapv:crossSpeciesExactMatch UBERON:0000474 female reproductive system semapv:ManualMappingCuration +FBbt:00004865 ovary semapv:crossSpeciesExactMatch UBERON:0000992 ovary semapv:ManualMappingCuration +FBbt:00004894 egg chamber semapv:crossSpeciesExactMatch UBERON:0003199 egg chamber semapv:ManualMappingCuration +FBbt:00004921 spermathecum semapv:crossSpeciesExactMatch UBERON:0000994 spermathecum semapv:ManualMappingCuration +FBbt:00004924 uterus semapv:crossSpeciesCloseMatch UBERON:0006834 uterus or analog semapv:ManualMappingCuration Debatable: The fly uterus is the site of egg fertilisation, not of embryo development (oviposition happens quickly after fertilization, so not a lot of developpment occurs while the egg is still in the uterus) +FBbt:00004927 male reproductive system semapv:crossSpeciesExactMatch UBERON:0000079 male reproductive system semapv:ManualMappingCuration +FBbt:00004928 testis semapv:crossSpeciesExactMatch UBERON:0000473 testis semapv:ManualMappingCuration +FBbt:00004958 seminal vesicle semapv:crossSpeciesExactMatch UBERON:0006868 seminal fluid secreting gland semapv:ManualMappingCuration +FBbt:00004969 integumentary system semapv:crossSpeciesExactMatch UBERON:0002416 integumental system semapv:ManualMappingCuration +FBbt:00004970 cuticle semapv:crossSpeciesExactMatch UBERON:0001001 chitin-based cuticle semapv:ManualMappingCuration +FBbt:00004973 exocuticle semapv:crossSpeciesExactMatch UBERON:0003201 exocuticle semapv:ManualMappingCuration +FBbt:00004974 endocuticle semapv:crossSpeciesExactMatch UBERON:0003202 endocuticle semapv:ManualMappingCuration Conflicting definition (inner layer in Uberon; middle layer in FBbt) +FBbt:00004979 trichome semapv:crossSpeciesExactMatch UBERON:6004979 insect trichome semapv:ManualMappingCuration +FBbt:00004983 embryonic/larval cuticle semapv:crossSpeciesExactMatch UBERON:6004983 insect embryonic/larval cuticle semapv:ManualMappingCuration +FBbt:00004986 third instar larval cuticle semapv:crossSpeciesExactMatch UBERON:6004986 insect third instar larval cuticle semapv:ManualMappingCuration +FBbt:00004987 puparium cuticle semapv:crossSpeciesExactMatch UBERON:0018656 puparium semapv:ManualMappingCuration +FBbt:00004993 epidermis semapv:crossSpeciesExactMatch UBERON:0007376 outer epithelium semapv:ManualMappingCuration +FBbt:00005023 imaginal precursor semapv:crossSpeciesExactMatch UBERON:6005023 insect imaginal precursor semapv:ManualMappingCuration +FBbt:00005024 tracheal system semapv:crossSpeciesExactMatch UBERON:0005155 open tracheal system semapv:ManualMappingCuration +FBbt:00005036 tracheal pit semapv:crossSpeciesExactMatch UBERON:6005036 insect tracheal pit semapv:ManualMappingCuration +FBbt:00005037 tracheal primordium semapv:crossSpeciesExactMatch UBERON:6005037 insect tracheal primordium semapv:ManualMappingCuration +FBbt:00005043 trachea semapv:crossSpeciesExactMatch UBERON:6005043 insect trachea semapv:ManualMappingCuration +FBbt:00005054 spiracle semapv:crossSpeciesExactMatch UBERON:6005054 insect spiracle semapv:ManualMappingCuration +FBbt:00005055 digestive system semapv:crossSpeciesExactMatch UBERON:0001007 digestive system semapv:ManualMappingCuration +FBbt:00005056 excretory system semapv:crossSpeciesExactMatch UBERON:0001008 renal system semapv:ManualMappingCuration +FBbt:00005057 circulatory system semapv:crossSpeciesExactMatch UBERON:0009054 open circulatory system semapv:ManualMappingCuration +FBbt:00005060 hemocoel semapv:crossSpeciesExactMatch UBERON:0002323 coelemic cavity lumen semapv:ManualMappingCuration +FBbt:00005061 hemolymph semapv:crossSpeciesExactMatch UBERON:0001011 hemolymph semapv:ManualMappingCuration +FBbt:00005066 fat body semapv:crossSpeciesExactMatch UBERON:0003917 arthropod fat body semapv:ManualMappingCuration Uberon definition makes it a single gland localized dorsally to the gut; FBbt definition makes it distributed throughout the body; and not sure it's correct to define it as a gland +FBbt:00005068 endocrine system semapv:crossSpeciesExactMatch UBERON:0000949 endocrine system semapv:ManualMappingCuration +FBbt:00005093 nervous system semapv:crossSpeciesExactMatch UBERON:0001016 nervous system semapv:ManualMappingCuration +FBbt:00005094 central nervous system semapv:crossSpeciesExactMatch UBERON:0001017 central nervous system semapv:ManualMappingCuration +FBbt:00005095 brain semapv:crossSpeciesExactMatch UBERON:0000955 brain semapv:ManualMappingCuration +FBbt:00005096 stomatogastric nervous system semapv:crossSpeciesExactMatch UBERON:6005096 insect stomatogastric nervous system semapv:ManualMappingCuration +FBbt:00005097 ventral nerve cord semapv:crossSpeciesExactMatch UBERON:0000934 ventral nerve cord semapv:ManualMappingCuration +FBbt:00005098 peripheral nervous system semapv:crossSpeciesExactMatch UBERON:0000010 peripheral nervous system semapv:ManualMappingCuration +FBbt:00005099 neuron projection bundle semapv:crossSpeciesExactMatch UBERON:0000122 neuron projection bundle semapv:ManualMappingCuration +FBbt:00005100 tract semapv:crossSpeciesExactMatch UBERON:0001018 axon tract semapv:ManualMappingCuration +FBbt:00005105 nerve semapv:crossSpeciesExactMatch UBERON:0001021 nerve semapv:ManualMappingCuration +FBbt:00005136 sensory nerve semapv:crossSpeciesExactMatch UBERON:0001027 sensory nerve semapv:ManualMappingCuration +FBbt:00005139 neuropil semapv:crossSpeciesExactMatch UBERON:0002606 neuropil semapv:ManualMappingCuration +FBbt:00005155 sense organ semapv:crossSpeciesExactMatch UBERON:0000020 sense organ semapv:ManualMappingCuration +FBbt:00005157 chemosensory sensory organ semapv:crossSpeciesExactMatch UBERON:0000005 chemosensory organ semapv:ManualMappingCuration +FBbt:00005158 olfactory sensory organ semapv:crossSpeciesExactMatch UBERON:0002268 olfactory organ semapv:ManualMappingCuration +FBbt:00005159 gustatory sensory organ semapv:crossSpeciesExactMatch UBERON:0003212 gustatory organ semapv:ManualMappingCuration +FBbt:00005162 photoreceptor semapv:crossSpeciesExactMatch UBERON:0000970 eye semapv:ManualMappingCuration +FBbt:00005168 external sensory organ semapv:crossSpeciesExactMatch UBERON:6005168 insect external sensory organ semapv:ManualMappingCuration +FBbt:00005177 chaeta semapv:crossSpeciesExactMatch UBERON:6005177 insect chaeta semapv:ManualMappingCuration +FBbt:00005215 chordotonal organ semapv:crossSpeciesExactMatch UBERON:0001038 chordotonal organ semapv:ManualMappingCuration +FBbt:00005317 gastrula embryo semapv:crossSpeciesExactMatch UBERON:0004734 gastrula semapv:ManualMappingCuration marked as deprecated in FBbt (but without suggested replacement) +FBbt:00005333 late embryo semapv:crossSpeciesExactMatch UBERON:0000323 late embryo semapv:ManualMappingCuration +FBbt:00005338 second instar larva semapv:crossSpeciesExactMatch UBERON:0018382 second instar larva semapv:ManualMappingCuration marked as deprecated in FBbt (but without suggested replacement) +FBbt:00005378 wing margin semapv:crossSpeciesExactMatch UBERON:6005378 insect wing margin semapv:ManualMappingCuration +FBbt:00005379 foregut semapv:crossSpeciesExactMatch UBERON:0001041 foregut semapv:ManualMappingCuration +FBbt:00005380 pharynx semapv:crossSpeciesExactMatch UBERON:6005380 insect pharynx semapv:ManualMappingCuration +FBbt:00005382 salivary gland semapv:crossSpeciesExactMatch UBERON:0001044 saliva-secreting gland semapv:ManualMappingCuration +FBbt:00005383 midgut semapv:crossSpeciesExactMatch UBERON:0001045 midgut semapv:ManualMappingCuration +FBbt:00005384 hindgut semapv:crossSpeciesExactMatch UBERON:0001046 hindgut semapv:ManualMappingCuration +FBbt:00005386 glomerulus semapv:crossSpeciesExactMatch UBERON:0001047 neural glomerulus semapv:ManualMappingCuration +FBbt:00005393 embryonic/larval integumentary system semapv:crossSpeciesExactMatch UBERON:6005393 insect embryonic/larval integumentary system semapv:ManualMappingCuration +FBbt:00005396 adult integumentary system semapv:crossSpeciesExactMatch UBERON:6005396 insect adult integumentary system semapv:ManualMappingCuration +FBbt:00005426 anlage semapv:crossSpeciesExactMatch UBERON:0007688 anlage semapv:ManualMappingCuration +FBbt:00005427 ectoderm anlage semapv:crossSpeciesExactMatch UBERON:6005427 insect ectoderm anlage semapv:ManualMappingCuration +FBbt:00005461 circulatory system primordium semapv:crossSpeciesExactMatch UBERON:6005461 insect circulatory system primordium semapv:ManualMappingCuration +FBbt:00005467 lymph gland primordium semapv:crossSpeciesExactMatch UBERON:6005467 insect lymph gland primordium semapv:ManualMappingCuration +FBbt:00005495 primordium semapv:crossSpeciesExactMatch UBERON:0001048 primordium semapv:ManualMappingCuration +FBbt:00005514 clypeo-labral disc primordium semapv:crossSpeciesExactMatch UBERON:6005514 insect adult clypeo-labral primordium semapv:ManualMappingCuration +FBbt:00005526 dorsal epidermis primordium semapv:crossSpeciesExactMatch UBERON:6005526 insect dorsal epidermis primordium semapv:ManualMappingCuration +FBbt:00005533 ventral epidermis primordium semapv:crossSpeciesExactMatch UBERON:6005533 insect ventral epidermis primordium semapv:ManualMappingCuration +FBbt:00005538 clypeo-labral primordium semapv:crossSpeciesExactMatch UBERON:6005538 insect clypeo-labral primordium semapv:ManualMappingCuration +FBbt:00005558 ventral ectoderm semapv:crossSpeciesExactMatch UBERON:6005558 insect ventral ectoderm semapv:ManualMappingCuration +FBbt:00005569 presumptive embryonic/larval tracheal system semapv:crossSpeciesExactMatch UBERON:6005569 insect presumptive embryonic/larval tracheal system semapv:ManualMappingCuration +FBbt:00005756 rectum semapv:crossSpeciesExactMatch UBERON:0006866 terminal part of digestive tract semapv:ManualMappingCuration +FBbt:00005757 neurohemal organ semapv:crossSpeciesExactMatch UBERON:0001053 arthropod neurohemal organ semapv:ManualMappingCuration +FBbt:00005786 Malpighian tubule semapv:crossSpeciesExactMatch UBERON:0001054 Malpighian tubule semapv:ManualMappingCuration +FBbt:00005799 corpus cardiacum semapv:crossSpeciesExactMatch UBERON:0001056 corpus cardiacum semapv:ManualMappingCuration +FBbt:00005800 corpus allatum semapv:crossSpeciesExactMatch UBERON:0001057 corpus allatum semapv:ManualMappingCuration +FBbt:00005801 mushroom body semapv:crossSpeciesExactMatch UBERON:0001058 mushroom body semapv:ManualMappingCuration +FBbt:00005802 pars intercerebralis semapv:crossSpeciesExactMatch UBERON:0001059 pars intercerebralis semapv:ManualMappingCuration +FBbt:00005805 Bolwig organ semapv:crossSpeciesExactMatch UBERON:6005805 insect Bolwig organ semapv:ManualMappingCuration +FBbt:00005811 articulation semapv:crossSpeciesExactMatch UBERON:0004905 articulation semapv:ManualMappingCuration +FBbt:00005830 Bolwig organ primordium semapv:crossSpeciesExactMatch UBERON:6005830 insect Bolwig organ primordium semapv:ManualMappingCuration +FBbt:00005831 dorsal imaginal tissue semapv:crossSpeciesExactMatch UBERON:6005831 insect dorsal imaginal precursor semapv:ManualMappingCuration +FBbt:00005835 extraembryonic structure semapv:crossSpeciesExactMatch UBERON:0000478 extraembryonic structure semapv:ManualMappingCuration +FBbt:00005913 arista lateral semapv:crossSpeciesExactMatch UBERON:6005913 insect arista lateral semapv:ManualMappingCuration +FBbt:00006011 pharate adult semapv:crossSpeciesExactMatch UBERON:6006011 insect pharate adult semapv:ManualMappingCuration +FBbt:00006032 mesothoracic tergum primordium semapv:crossSpeciesExactMatch UBERON:6006032 insect mesothoracic tergum primordium semapv:ManualMappingCuration +FBbt:00007000 appendage semapv:crossSpeciesExactMatch UBERON:0000026 appendage semapv:ManualMappingCuration +FBbt:00007001 anatomical structure semapv:crossSpeciesExactMatch UBERON:0000061 anatomical structure semapv:ManualMappingCuration +FBbt:00007003 portion of tissue semapv:crossSpeciesExactMatch UBERON:0000479 tissue semapv:ManualMappingCuration +FBbt:00007004 male organism semapv:crossSpeciesExactMatch UBERON:0003101 male organism semapv:ManualMappingCuration +FBbt:00007005 epithelium semapv:crossSpeciesExactMatch UBERON:0000483 epithelium semapv:ManualMappingCuration +FBbt:00007006 developing material anatomical entity semapv:crossSpeciesExactMatch UBERON:0005423 developing anatomical structure semapv:ManualMappingCuration +FBbt:00007009 organism subdivision semapv:crossSpeciesExactMatch UBERON:0000475 organism subdivision semapv:ManualMappingCuration +FBbt:00007010 multi-tissue structure semapv:crossSpeciesExactMatch UBERON:0000481 multi-tissue structure semapv:ManualMappingCuration +FBbt:00007011 female organism semapv:crossSpeciesExactMatch UBERON:0003100 female organism semapv:ManualMappingCuration +FBbt:00007013 acellular anatomical structure semapv:crossSpeciesExactMatch UBERON:0000476 acellular anatomical structure semapv:ManualMappingCuration +FBbt:00007015 immaterial anatomical entity semapv:crossSpeciesExactMatch UBERON:0000466 immaterial anatomical entity semapv:ManualMappingCuration +FBbt:00007016 material anatomical entity semapv:crossSpeciesExactMatch UBERON:0000465 material anatomical entity semapv:ManualMappingCuration +FBbt:00007017 anatomical space semapv:crossSpeciesExactMatch UBERON:0000464 anatomical space semapv:ManualMappingCuration +FBbt:00007018 appendage segment semapv:crossSpeciesExactMatch UBERON:0010758 subdivision of organism along appendicular axis semapv:ManualMappingCuration +FBbt:00007019 portion of organism substance semapv:crossSpeciesExactMatch UBERON:0000463 organism substance semapv:ManualMappingCuration +FBbt:00007020 metatarsus of male prothoracic leg semapv:crossSpeciesExactMatch UBERON:6007020 insect metatarsus of male prothoracic leg semapv:ManualMappingCuration +FBbt:00007027 cuboidal/columnar epithelium semapv:crossSpeciesExactMatch UBERON:0000485 simple columnar epithelium semapv:ManualMappingCuration +FBbt:00007045 trunk ectoderm semapv:crossSpeciesExactMatch UBERON:6007045 insect trunk ectoderm semapv:ManualMappingCuration +FBbt:00007060 multi-cell-component structure semapv:crossSpeciesExactMatch UBERON:0005162 multi cell part structure semapv:ManualMappingCuration +FBbt:00007070 embryonic/larval posterior inferior protocerebrum semapv:crossSpeciesExactMatch UBERON:6007070 insect centro-posterior medial synaptic neuropil domain semapv:ManualMappingCuration +FBbt:00007091 subperineurial glial sheath semapv:crossSpeciesCloseMatch UBERON:0000202 glial blood brain barrier semapv:ManualMappingCuration Debatable: the subperineurial glia does act “like” a BBB but is it enough to make the two terms equivalent? +FBbt:00007116 presumptive embryonic/larval system semapv:crossSpeciesExactMatch UBERON:6007116 insect presumptive embryonic/larval system semapv:ManualMappingCuration +FBbt:00007145 adult protocerebrum semapv:crossSpeciesExactMatch UBERON:6007145 insect adult protocerebrum semapv:ManualMappingCuration +FBbt:00007149 segment of antenna semapv:crossSpeciesExactMatch UBERON:6007149 segment of antenna semapv:ManualMappingCuration +FBbt:00007150 segment of leg semapv:crossSpeciesExactMatch UBERON:6007150 insect segment of leg semapv:ManualMappingCuration +FBbt:00007152 sensillum semapv:crossSpeciesExactMatch UBERON:0002536 arthropod sensillum semapv:ManualMappingCuration +FBbt:00007229 cell cluster organ semapv:crossSpeciesExactMatch UBERON:0010001 cell cluster organ semapv:ManualMappingCuration +FBbt:00007230 compound cell cluster organ semapv:crossSpeciesExactMatch UBERON:0014732 compound cell cluster organ semapv:ManualMappingCuration +FBbt:00007231 external sensillum semapv:crossSpeciesExactMatch UBERON:6007231 insect external sensillum semapv:ManualMappingCuration +FBbt:00007232 eo-type sensillum semapv:crossSpeciesExactMatch UBERON:6007232 insect eo-type sensillum semapv:ManualMappingCuration +FBbt:00007233 internal sensillum semapv:crossSpeciesExactMatch UBERON:6007233 insect internal sensillum semapv:ManualMappingCuration +FBbt:00007240 embryonic/larval sensillum semapv:crossSpeciesExactMatch UBERON:6007240 insect embryonic/larval sensillum semapv:ManualMappingCuration +FBbt:00007242 embryonic/larval head sensillum semapv:crossSpeciesExactMatch UBERON:6007242 insect embryonic/larval head sensillum semapv:ManualMappingCuration +FBbt:00007245 cuticular specialization semapv:crossSpeciesExactMatch UBERON:6007245 insect cuticular specialization semapv:ManualMappingCuration +FBbt:00007248 chorionic specialization semapv:crossSpeciesExactMatch UBERON:6007248 insect chorionic specialization semapv:ManualMappingCuration +FBbt:00007276 anatomical group semapv:crossSpeciesExactMatch UBERON:0034923 disconnected anatomical group semapv:ManualMappingCuration +FBbt:00007277 anatomical cluster semapv:crossSpeciesExactMatch UBERON:0000477 anatomical cluster semapv:ManualMappingCuration +FBbt:00007278 non-connected functional system semapv:crossSpeciesExactMatch UBERON:0015203 non-connected functional system semapv:ManualMappingCuration +FBbt:00007280 embryonic/larval head sense organ semapv:crossSpeciesExactMatch UBERON:6007280 insect embryonic/larval head sense organ semapv:ManualMappingCuration +FBbt:00007284 region of integument semapv:crossSpeciesExactMatch UBERON:6007284 insect region of integument semapv:ManualMappingCuration +FBbt:00007285 segmental subdivision of integument semapv:crossSpeciesExactMatch UBERON:6007285 insect segmental subdivision of integument semapv:ManualMappingCuration +FBbt:00007288 integumentary specialization semapv:crossSpeciesExactMatch UBERON:6007288 insect integumentary specialisation semapv:ManualMappingCuration +FBbt:00007289 tagmatic subdivision of integument semapv:crossSpeciesExactMatch UBERON:6007289 insect tagmatic subdivision of integument semapv:ManualMappingCuration +FBbt:00007330 organ system subdivision semapv:crossSpeciesExactMatch UBERON:0011216 organ system subdivision semapv:ManualMappingCuration +FBbt:00007331 segmental subdivision of organ system semapv:crossSpeciesExactMatch UBERON:6007331 insect segmental subdivision of organ system semapv:ManualMappingCuration +FBbt:00007373 internal sense organ semapv:crossSpeciesExactMatch UBERON:6007373 insect internal sense organ semapv:ManualMappingCuration +FBbt:00007410 tracheal lumen semapv:crossSpeciesExactMatch UBERON:0006832 lumen of open tracheal system trachea semapv:ManualMappingCuration +FBbt:00007424 epithelial furrow semapv:crossSpeciesExactMatch UBERON:6007424 insect epithelial furrow semapv:ManualMappingCuration +FBbt:00007474 epithelial tube semapv:crossSpeciesExactMatch UBERON:0003914 epithelial tube semapv:ManualMappingCuration +FBbt:00007692 sensory system semapv:crossSpeciesExactMatch UBERON:0001032 sensory system semapv:ManualMappingCuration +FBbt:00016022 abdominal histoblast primordium semapv:crossSpeciesExactMatch UBERON:6016022 insect abdominal histoblast primordium semapv:ManualMappingCuration +FBbt:00040003 non-connected developing system semapv:crossSpeciesExactMatch UBERON:6040003 insect non-connected developing system semapv:ManualMappingCuration +FBbt:00040005 synaptic neuropil semapv:crossSpeciesExactMatch UBERON:6040005 insect synaptic neuropil semapv:ManualMappingCuration +FBbt:00040007 synaptic neuropil domain semapv:crossSpeciesExactMatch UBERON:6040007 insect synaptic neuropil domain semapv:ManualMappingCuration +FBbt:00041000 synaptic neuropil block semapv:crossSpeciesExactMatch UBERON:6041000 insect synaptic neuropil block semapv:ManualMappingCuration +FBbt:00047153 anus semapv:crossSpeciesExactMatch UBERON:0001245 anus semapv:ManualMappingCuration +FBbt:00047166 gut epithelium semapv:crossSpeciesExactMatch UBERON:0003929 digestive tract epithelium semapv:ManualMappingCuration +FBbt:00058291 dorsal vessel semapv:crossSpeciesExactMatch UBERON:0015231 circulatory system dorsal vessel semapv:ManualMappingCuration +FBbt:00100152 row semapv:crossSpeciesExactMatch UBERON:0034926 anatomical row semapv:ManualMappingCuration +FBbt:00100153 sensillum row semapv:crossSpeciesExactMatch UBERON:6100153 insect sensilla row semapv:ManualMappingCuration +FBbt:00100313 multicellular structure semapv:crossSpeciesExactMatch UBERON:0010000 multicellular anatomical structure semapv:ManualMappingCuration +FBbt:00100314 duct semapv:crossSpeciesExactMatch UBERON:0000058 duct semapv:ManualMappingCuration +FBbt:00100315 gut section semapv:crossSpeciesExactMatch UBERON:0004921 subdivision of digestive tract semapv:ManualMappingCuration +FBbt:00100316 diverticulum of gut semapv:crossSpeciesExactMatch UBERON:0009854 digestive tract diverticulum semapv:ManualMappingCuration +FBbt:00100317 gland semapv:crossSpeciesExactMatch UBERON:0002530 gland semapv:ManualMappingCuration +FBbt:00110636 adult cerebral ganglion semapv:crossSpeciesExactMatch UBERON:6110636 insect adult cerebral ganglion semapv:ManualMappingCuration +FBbt:00110746 presumptive prothoracic metatarsus semapv:crossSpeciesExactMatch UBERON:6110746 insect presumptive prothoracic metatarsus semapv:ManualMappingCuration +FBbt:00110811 presumptive arista semapv:crossSpeciesExactMatch UBERON:6110811 insect presumptive arista semapv:ManualMappingCuration +FBbt:10000000 anatomical entity semapv:crossSpeciesExactMatch UBERON:0001062 anatomical entity semapv:ManualMappingCuration diff --git a/src/ontology/bridge/cl-bridge-to-caro.owl b/src/ontology/bridge/cl-bridge-to-caro.owl index 2c55049aa8..6be863a809 100644 --- a/src/ontology/bridge/cl-bridge-to-caro.owl +++ b/src/ontology/bridge/cl-bridge-to-caro.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/cl-bridge-to-ehdaa2.owl b/src/ontology/bridge/cl-bridge-to-ehdaa2.owl index 7ef80ef77d..d63abff065 100644 --- a/src/ontology/bridge/cl-bridge-to-ehdaa2.owl +++ b/src/ontology/bridge/cl-bridge-to-ehdaa2.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Jonathan Bard CL editors Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA. diff --git a/src/ontology/bridge/cl-bridge-to-emapa.owl b/src/ontology/bridge/cl-bridge-to-emapa.owl index 7c2d50d95b..9de6702823 100644 --- a/src/ontology/bridge/cl-bridge-to-emapa.owl +++ b/src/ontology/bridge/cl-bridge-to-emapa.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Anne Niknejad Aurelie Comte CL editors diff --git a/src/ontology/bridge/cl-bridge-to-fbbt.owl b/src/ontology/bridge/cl-bridge-to-fbbt.owl index ecddb7b951..db4de3face 100644 --- a/src/ontology/bridge/cl-bridge-to-fbbt.owl +++ b/src/ontology/bridge/cl-bridge-to-fbbt.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + David Osumi-Sutherland CL editors Taxonomic equivalence axioms between the Drosophila Anatomy Ontology and CL. diff --git a/src/ontology/bridge/cl-bridge-to-fma.owl b/src/ontology/bridge/cl-bridge-to-fma.owl index e8b20665b7..7d727f2716 100644 --- a/src/ontology/bridge/cl-bridge-to-fma.owl +++ b/src/ontology/bridge/cl-bridge-to-fma.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Onard Mejino Terry Hayamizu CL editors diff --git a/src/ontology/bridge/cl-bridge-to-go.owl b/src/ontology/bridge/cl-bridge-to-go.owl index 5238e9417a..d61d252daf 100644 --- a/src/ontology/bridge/cl-bridge-to-go.owl +++ b/src/ontology/bridge/cl-bridge-to-go.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/cl-bridge-to-kupo.owl b/src/ontology/bridge/cl-bridge-to-kupo.owl index 65596a98a2..8ea4d562d6 100644 --- a/src/ontology/bridge/cl-bridge-to-kupo.owl +++ b/src/ontology/bridge/cl-bridge-to-kupo.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/cl-bridge-to-ma.owl b/src/ontology/bridge/cl-bridge-to-ma.owl index cec7ed53a9..11d43e3675 100644 --- a/src/ontology/bridge/cl-bridge-to-ma.owl +++ b/src/ontology/bridge/cl-bridge-to-ma.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + George Gkoutos CL editors Terry Hayamizu diff --git a/src/ontology/bridge/cl-bridge-to-ncit.owl b/src/ontology/bridge/cl-bridge-to-ncit.owl index ed48b276b5..3c5c1e8299 100644 --- a/src/ontology/bridge/cl-bridge-to-ncit.owl +++ b/src/ontology/bridge/cl-bridge-to-ncit.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/cl-bridge-to-sctid.owl b/src/ontology/bridge/cl-bridge-to-sctid.owl index cf98fde514..16a99f1014 100644 --- a/src/ontology/bridge/cl-bridge-to-sctid.owl +++ b/src/ontology/bridge/cl-bridge-to-sctid.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + OBOL CL editors Rough subclass axioms between SNOMED-CT and CL. Note that SNOMED is not open, unlike other ontologies used in bridges here. Consequently, the mappings here are not verified to the same degree. diff --git a/src/ontology/bridge/cl-bridge-to-wbbt.owl b/src/ontology/bridge/cl-bridge-to-wbbt.owl index 03bec95979..4f7aa43248 100644 --- a/src/ontology/bridge/cl-bridge-to-wbbt.owl +++ b/src/ontology/bridge/cl-bridge-to-wbbt.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/cl-bridge-to-xao.owl b/src/ontology/bridge/cl-bridge-to-xao.owl index b31d4a2db7..6b87171e96 100644 --- a/src/ontology/bridge/cl-bridge-to-xao.owl +++ b/src/ontology/bridge/cl-bridge-to-xao.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Erik Segerdell VG Ponferrada CL editors diff --git a/src/ontology/bridge/cl-bridge-to-zfa.owl b/src/ontology/bridge/cl-bridge-to-zfa.owl index 6262ff1b05..203efacda0 100644 --- a/src/ontology/bridge/cl-bridge-to-zfa.owl +++ b/src/ontology/bridge/cl-bridge-to-zfa.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Melissa Haendel Veri Van Slyke Yvonne Bradford diff --git a/src/ontology/bridge/uberon-bridge-to-aeo.owl b/src/ontology/bridge/uberon-bridge-to-aeo.owl index f4a914ed00..6712eeb56f 100644 --- a/src/ontology/bridge/uberon-bridge-to-aeo.owl +++ b/src/ontology/bridge/uberon-bridge-to-aeo.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-bfo.owl b/src/ontology/bridge/uberon-bridge-to-bfo.owl index d511a5e6e6..bd6b2c41e8 100644 --- a/src/ontology/bridge/uberon-bridge-to-bfo.owl +++ b/src/ontology/bridge/uberon-bridge-to-bfo.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-caro.owl b/src/ontology/bridge/uberon-bridge-to-caro.owl index 8b4ab8d2a4..ba3143371b 100644 --- a/src/ontology/bridge/uberon-bridge-to-caro.owl +++ b/src/ontology/bridge/uberon-bridge-to-caro.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-dhba.owl b/src/ontology/bridge/uberon-bridge-to-dhba.owl index 3a97bca0ac..6118facec0 100644 --- a/src/ontology/bridge/uberon-bridge-to-dhba.owl +++ b/src/ontology/bridge/uberon-bridge-to-dhba.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl b/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl index f55bc387b7..54c871939b 100644 --- a/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl +++ b/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Jonathan Bard Uberon editors Equivalence axioms between EHDAA2 and Uberon. EHDAA2 replaces EHDAA. diff --git a/src/ontology/bridge/uberon-bridge-to-emapa.owl b/src/ontology/bridge/uberon-bridge-to-emapa.owl index 191941fb62..b8f0c3fc85 100644 --- a/src/ontology/bridge/uberon-bridge-to-emapa.owl +++ b/src/ontology/bridge/uberon-bridge-to-emapa.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Anne Niknejad Aurelie Comte Uberon editors diff --git a/src/ontology/bridge/uberon-bridge-to-fbbt.owl b/src/ontology/bridge/uberon-bridge-to-fbbt.owl index 2e89e82da6..697c4797ef 100644 --- a/src/ontology/bridge/uberon-bridge-to-fbbt.owl +++ b/src/ontology/bridge/uberon-bridge-to-fbbt.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + David Osumi-Sutherland Uberon editors Taxonomic equivalence axioms between the Drosophila Anatomy Ontology and Uberon. diff --git a/src/ontology/bridge/uberon-bridge-to-fbdv.owl b/src/ontology/bridge/uberon-bridge-to-fbdv.owl index 743ff0003a..cd93c76537 100644 --- a/src/ontology/bridge/uberon-bridge-to-fbdv.owl +++ b/src/ontology/bridge/uberon-bridge-to-fbdv.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-fma.owl b/src/ontology/bridge/uberon-bridge-to-fma.owl index 8f14071a61..22d2d1d37e 100644 --- a/src/ontology/bridge/uberon-bridge-to-fma.owl +++ b/src/ontology/bridge/uberon-bridge-to-fma.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Onard Mejino Terry Hayamizu Uberon editors diff --git a/src/ontology/bridge/uberon-bridge-to-go.owl b/src/ontology/bridge/uberon-bridge-to-go.owl index 0196699060..004e311f7f 100644 --- a/src/ontology/bridge/uberon-bridge-to-go.owl +++ b/src/ontology/bridge/uberon-bridge-to-go.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-hao.owl b/src/ontology/bridge/uberon-bridge-to-hao.owl index 406e37fe04..91a9082472 100644 --- a/src/ontology/bridge/uberon-bridge-to-hao.owl +++ b/src/ontology/bridge/uberon-bridge-to-hao.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-hba.owl b/src/ontology/bridge/uberon-bridge-to-hba.owl index 8596f22959..42ffade9b4 100644 --- a/src/ontology/bridge/uberon-bridge-to-hba.owl +++ b/src/ontology/bridge/uberon-bridge-to-hba.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-hsapdv.owl b/src/ontology/bridge/uberon-bridge-to-hsapdv.owl index 175028844c..1e8b543bf5 100644 --- a/src/ontology/bridge/uberon-bridge-to-hsapdv.owl +++ b/src/ontology/bridge/uberon-bridge-to-hsapdv.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-kupo.owl b/src/ontology/bridge/uberon-bridge-to-kupo.owl index 0a39f66c9c..25911d8507 100644 --- a/src/ontology/bridge/uberon-bridge-to-kupo.owl +++ b/src/ontology/bridge/uberon-bridge-to-kupo.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-ma.owl b/src/ontology/bridge/uberon-bridge-to-ma.owl index 511baf1f01..d313c5d905 100644 --- a/src/ontology/bridge/uberon-bridge-to-ma.owl +++ b/src/ontology/bridge/uberon-bridge-to-ma.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + George Gkoutos Terry Hayamizu Uberon editors diff --git a/src/ontology/bridge/uberon-bridge-to-mmusdv.owl b/src/ontology/bridge/uberon-bridge-to-mmusdv.owl index a5238df9f2..5b48644f7d 100644 --- a/src/ontology/bridge/uberon-bridge-to-mmusdv.owl +++ b/src/ontology/bridge/uberon-bridge-to-mmusdv.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-ncit.owl b/src/ontology/bridge/uberon-bridge-to-ncit.owl index a5fbb49516..6cb165beb3 100644 --- a/src/ontology/bridge/uberon-bridge-to-ncit.owl +++ b/src/ontology/bridge/uberon-bridge-to-ncit.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-oges.owl b/src/ontology/bridge/uberon-bridge-to-oges.owl index 726c3423c2..41c248b837 100644 --- a/src/ontology/bridge/uberon-bridge-to-oges.owl +++ b/src/ontology/bridge/uberon-bridge-to-oges.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-pba.owl b/src/ontology/bridge/uberon-bridge-to-pba.owl index f69eb45b62..8e0032792b 100644 --- a/src/ontology/bridge/uberon-bridge-to-pba.owl +++ b/src/ontology/bridge/uberon-bridge-to-pba.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-sctid.owl b/src/ontology/bridge/uberon-bridge-to-sctid.owl index 5298fd17a6..24f3480c9b 100644 --- a/src/ontology/bridge/uberon-bridge-to-sctid.owl +++ b/src/ontology/bridge/uberon-bridge-to-sctid.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + OBOL Uberon editors Rough subclass axioms between SNOMED-CT and Uberon. Note that SNOMED is not open, unlike other ontologies used in bridges here. Consequently, the mappings here are not verified to the same degree. diff --git a/src/ontology/bridge/uberon-bridge-to-spd.owl b/src/ontology/bridge/uberon-bridge-to-spd.owl index 0300d89deb..7bd21656bb 100644 --- a/src/ontology/bridge/uberon-bridge-to-spd.owl +++ b/src/ontology/bridge/uberon-bridge-to-spd.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-tads.owl b/src/ontology/bridge/uberon-bridge-to-tads.owl index 4ed612c67a..f5c73e1c01 100644 --- a/src/ontology/bridge/uberon-bridge-to-tads.owl +++ b/src/ontology/bridge/uberon-bridge-to-tads.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-tgma.owl b/src/ontology/bridge/uberon-bridge-to-tgma.owl index 63340eb985..b3d9ec5314 100644 --- a/src/ontology/bridge/uberon-bridge-to-tgma.owl +++ b/src/ontology/bridge/uberon-bridge-to-tgma.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-wbbt.owl b/src/ontology/bridge/uberon-bridge-to-wbbt.owl index 1221983474..1b98cf9ddb 100644 --- a/src/ontology/bridge/uberon-bridge-to-wbbt.owl +++ b/src/ontology/bridge/uberon-bridge-to-wbbt.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-wbls.owl b/src/ontology/bridge/uberon-bridge-to-wbls.owl index 91b75c9dc9..932a3b63df 100644 --- a/src/ontology/bridge/uberon-bridge-to-wbls.owl +++ b/src/ontology/bridge/uberon-bridge-to-wbls.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/bridge/uberon-bridge-to-xao.owl b/src/ontology/bridge/uberon-bridge-to-xao.owl index 04196f2f7f..dfe713341d 100644 --- a/src/ontology/bridge/uberon-bridge-to-xao.owl +++ b/src/ontology/bridge/uberon-bridge-to-xao.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Erik Segerdell VG Ponferrada Uberon editors diff --git a/src/ontology/bridge/uberon-bridge-to-zfa.owl b/src/ontology/bridge/uberon-bridge-to-zfa.owl index b0182da05c..9312c251f2 100644 --- a/src/ontology/bridge/uberon-bridge-to-zfa.owl +++ b/src/ontology/bridge/uberon-bridge-to-zfa.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Melissa Haendel Veri Van Slyke Yvonne Bradford diff --git a/src/ontology/bridge/uberon-bridge-to-zfs.owl b/src/ontology/bridge/uberon-bridge-to-zfs.owl index 5c573d423e..8001ff2938 100644 --- a/src/ontology/bridge/uberon-bridge-to-zfs.owl +++ b/src/ontology/bridge/uberon-bridge-to-zfs.owl @@ -8,7 +8,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - + diff --git a/src/ontology/diffs/uberon-diff.md b/src/ontology/diffs/uberon-diff.md index 41e8e2a41c..5f22c1b672 100644 --- a/src/ontology/diffs/uberon-diff.md +++ b/src/ontology/diffs/uberon-diff.md @@ -2,13 +2,13 @@ ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/uberon/uberon-base.owl` -- Version IRI: `http://purl.obolibrary.org/obo/uberon/releases/2024-08-07/uberon-base.owl` -- Loaded from: `file:/work/src/ontology/diffs/uberon-lastbuild.owl` +- Version IRI: `http://purl.obolibrary.org/obo/uberon/releases/2024-09-03/uberon-base.owl` +- Loaded from: `file:/nfs/production/parkinso/spot/ontology-releases/uberon/src/ontology/diffs/uberon-lastbuild.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/uberon/uberon-base.owl` -- Version IRI: `http://purl.obolibrary.org/obo/uberon/releases/2024-09-03/uberon-base.owl` -- Loaded from: `file:/work/src/ontology/diffs/../../../uberon-base.owl` +- Version IRI: `http://purl.obolibrary.org/obo/uberon/releases/2024-11-25/uberon-base.owl` +- Loaded from: `file:/nfs/production/parkinso/spot/ontology-releases/uberon/src/ontology/diffs/../../../uberon-base.owl` ### Ontology imports @@ -16,7337 +16,1015 @@ ### Ontology annotations #### Removed -- [versionInfo](http://www.w3.org/2002/07/owl#versionInfo) "2024-08-07" - -#### Added - [versionInfo](http://www.w3.org/2002/07/owl#versionInfo) "2024-09-03" - -### Ammon's horn `http://purl.obolibrary.org/obo/UBERON_0001954` -#### Removed -- [Ammon's horn](http://purl.obolibrary.org/obo/UBERON_0001954) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia:Hippocampus" - #### Added -- [Ammon's horn](http://purl.obolibrary.org/obo/UBERON_0001954) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia:Hippocampus" +- [versionInfo](http://www.w3.org/2002/07/owl#versionInfo) "2024-11-25" -### Aristotle's lantern `http://purl.obolibrary.org/obo/UBERON_0008253` +### 1st arch mesenchyme from head mesenchyme `http://purl.obolibrary.org/obo/UBERON_0010341` #### Removed -- [Aristotle's lantern](http://purl.obolibrary.org/obo/UBERON_0008253) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7625](http://purl.obolibrary.org/obo/NCBITaxon_7625) +- [1st arch mesenchyme from head mesenchyme](http://purl.obolibrary.org/obo/UBERON_0010341) SubClassOf [head mesenchyme from mesoderm](http://purl.obolibrary.org/obo/UBERON_0006904) -#### Added -- [Aristotle's lantern](http://purl.obolibrary.org/obo/UBERON_0008253) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7625](http://purl.obolibrary.org/obo/NCBITaxon_7625) -### Duvernoy's gland `http://purl.obolibrary.org/obo/UBERON_0010048` +### 2nd arch mesenchyme from head mesenchyme `http://purl.obolibrary.org/obo/UBERON_0010343` #### Removed -- [Duvernoy's gland](http://purl.obolibrary.org/obo/UBERON_0010048) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8578](http://purl.obolibrary.org/obo/NCBITaxon_8578) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" +- [2nd arch mesenchyme from head mesenchyme](http://purl.obolibrary.org/obo/UBERON_0010343) SubClassOf [head mesenchyme from mesoderm](http://purl.obolibrary.org/obo/UBERON_0006904) -#### Added -- [Duvernoy's gland](http://purl.obolibrary.org/obo/UBERON_0010048) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8578](http://purl.obolibrary.org/obo/NCBITaxon_8578) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" -### Eimer's organ `http://purl.obolibrary.org/obo/UBERON_0011255` +### 3rd arch mesenchyme from head mesenchyme `http://purl.obolibrary.org/obo/UBERON_0010344` #### Removed -- [Eimer's organ](http://purl.obolibrary.org/obo/UBERON_0011255) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9373](http://purl.obolibrary.org/obo/NCBITaxon_9373) +- [3rd arch mesenchyme from head mesenchyme](http://purl.obolibrary.org/obo/UBERON_0010344) SubClassOf [head mesenchyme from mesoderm](http://purl.obolibrary.org/obo/UBERON_0006904) -#### Added -- [Eimer's organ](http://purl.obolibrary.org/obo/UBERON_0011255) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9373](http://purl.obolibrary.org/obo/NCBITaxon_9373) -### Grueneberg ganglion `http://purl.obolibrary.org/obo/UBERON_0013208` +### 4th arch mesenchyme from head mesenchyme `http://purl.obolibrary.org/obo/UBERON_0010345` #### Removed -- [Grueneberg ganglion](http://purl.obolibrary.org/obo/UBERON_0013208) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9989](http://purl.obolibrary.org/obo/NCBITaxon_9989) +- [4th arch mesenchyme from head mesenchyme](http://purl.obolibrary.org/obo/UBERON_0010345) SubClassOf [head mesenchyme from mesoderm](http://purl.obolibrary.org/obo/UBERON_0006904) -#### Added -- [Grueneberg ganglion](http://purl.obolibrary.org/obo/UBERON_0013208) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9989](http://purl.obolibrary.org/obo/NCBITaxon_9989) -### Harderian gland `http://purl.obolibrary.org/obo/UBERON_0004187` +### 6th arch mesenchyme from head mesenchyme `http://purl.obolibrary.org/obo/UBERON_0010347` #### Removed -- [Harderian gland](http://purl.obolibrary.org/obo/UBERON_0004187) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:7559104" +- [6th arch mesenchyme from head mesenchyme](http://purl.obolibrary.org/obo/UBERON_0010347) SubClassOf [head mesenchyme from mesoderm](http://purl.obolibrary.org/obo/UBERON_0006904) -#### Added -- [Harderian gland](http://purl.obolibrary.org/obo/UBERON_0004187) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:7559104" -### Hatschek's diverticulum `http://purl.obolibrary.org/obo/UBERON_0009867` +### GCIs #### Removed -- [Hatschek's diverticulum](http://purl.obolibrary.org/obo/UBERON_0009867) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7737](http://purl.obolibrary.org/obo/NCBITaxon_7737) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" +- [hyaloid vessel](http://purl.obolibrary.org/obo/UBERON_0005492) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674)) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [embryo](http://purl.obolibrary.org/obo/UBERON_0000922) #### Added -- [Hatschek's diverticulum](http://purl.obolibrary.org/obo/UBERON_0009867) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7737](http://purl.obolibrary.org/obo/NCBITaxon_7737) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" +- ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [embryo](http://purl.obolibrary.org/obo/UBERON_0000922)) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [craniocervical region](http://purl.obolibrary.org/obo/UBERON_0007811)) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [embryonic craniocervical region](http://purl.obolibrary.org/obo/UBERON_8450003) -### Hatschek's nephridium `http://purl.obolibrary.org/obo/UBERON_0009866` +### Peyer's patch epithelium `http://purl.obolibrary.org/obo/UBERON_0004693` #### Removed -- [Hatschek's nephridium](http://purl.obolibrary.org/obo/UBERON_0009866) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7737](http://purl.obolibrary.org/obo/NCBITaxon_7737) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" +- [Peyer's patch epithelium](http://purl.obolibrary.org/obo/UBERON_0004693) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "The specialized epithelium of the Peyer's patch." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0002388" -#### Added -- [Hatschek's nephridium](http://purl.obolibrary.org/obo/UBERON_0009866) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7737](http://purl.obolibrary.org/obo/NCBITaxon_7737) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0-8153-1691-7" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MGI:cwg" -### Hatschek's pit `http://purl.obolibrary.org/obo/UBERON_0009865` -#### Removed -- [Hatschek's pit](http://purl.obolibrary.org/obo/UBERON_0009865) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7737](http://purl.obolibrary.org/obo/NCBITaxon_7737) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" +- [Peyer's patch epithelium](http://purl.obolibrary.org/obo/UBERON_0004693) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Peyer's patch epithelium" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MA:0000731" #### Added -- [Hatschek's pit](http://purl.obolibrary.org/obo/UBERON_0009865) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7737](http://purl.obolibrary.org/obo/NCBITaxon_7737) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### Herbst's corpuscle `http://purl.obolibrary.org/obo/UBERON_0012448` -#### Removed -- [Herbst's corpuscle](http://purl.obolibrary.org/obo/UBERON_0012448) SubClassOf [mechanoreceptor](http://purl.obolibrary.org/obo/UBERON_0012449) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -- [Herbst's corpuscle](http://purl.obolibrary.org/obo/UBERON_0012448) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) +- [Peyer's patch epithelium](http://purl.obolibrary.org/obo/UBERON_0004693) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "The specialized epithelial layer covering the entire Peyer's patch, including both the follicular and interfollicular areas and forming part of the gut-associated lymphoid tissue." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0002388" -#### Added -- [Herbst's corpuscle](http://purl.obolibrary.org/obo/UBERON_0012448) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0-8153-1691-7" -- [Herbst's corpuscle](http://purl.obolibrary.org/obo/UBERON_0012448) SubClassOf [sensory corpuscle](http://purl.obolibrary.org/obo/UBERON_8900000) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MGI:cwg" +- [Peyer's patch epithelium](http://purl.obolibrary.org/obo/UBERON_0004693) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Peyer's patch epithelium" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MA:0000731" -### His-Purkinje system `http://purl.obolibrary.org/obo/UBERON_0004146` -#### Removed -- [His-Purkinje system](http://purl.obolibrary.org/obo/UBERON_0004146) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "github:michaelerice" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:31813624" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:12626327" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:21234997" +### accessory meningeal artery `http://purl.obolibrary.org/obo/UBERON_8600099` #### Added -- [His-Purkinje system](http://purl.obolibrary.org/obo/UBERON_0004146) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "github:michaelerice" +- [accessory meningeal artery](http://purl.obolibrary.org/obo/UBERON_8600099) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:12626327" +- [accessory meningeal artery](http://purl.obolibrary.org/obo/UBERON_8600099) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:21234997" - -### Koller's sickle `http://purl.obolibrary.org/obo/UBERON_0009888` +### afferent filamental artery `http://purl.obolibrary.org/obo/UBERON_2005012` #### Removed -- [Koller's sickle](http://purl.obolibrary.org/obo/UBERON_0009888) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) +- [afferent filamental artery](http://purl.obolibrary.org/obo/UBERON_2005012) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) -#### Added -- [Koller's sickle](http://purl.obolibrary.org/obo/UBERON_0009888) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) -### Leydig's organ `http://purl.obolibrary.org/obo/UBERON_0000040` +### afferent lamellar arteriole `http://purl.obolibrary.org/obo/UBERON_2005015` #### Removed -- [Leydig's organ](http://purl.obolibrary.org/obo/UBERON_0000040) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7778](http://purl.obolibrary.org/obo/NCBITaxon_7778) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" +- [afferent lamellar arteriole](http://purl.obolibrary.org/obo/UBERON_2005015) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) -#### Added -- [Leydig's organ](http://purl.obolibrary.org/obo/UBERON_0000040) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7778](http://purl.obolibrary.org/obo/NCBITaxon_7778) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" -### Malpighian tubule `http://purl.obolibrary.org/obo/UBERON_0001054` +### afferent portion of pharyngeal arch artery `http://purl.obolibrary.org/obo/UBERON_2000716` #### Removed -- [Malpighian tubule](http://purl.obolibrary.org/obo/UBERON_0001054) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) +- [afferent portion of pharyngeal arch artery](http://purl.obolibrary.org/obo/UBERON_2000716) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) -#### Added -- [Malpighian tubule](http://purl.obolibrary.org/obo/UBERON_0001054) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) -### Marshall's gland `http://purl.obolibrary.org/obo/UBERON_0011149` -#### Removed -- [Marshall's gland](http://purl.obolibrary.org/obo/UBERON_0011149) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_117893](http://purl.obolibrary.org/obo/NCBITaxon_117893) +### anterior internal vertebral venous plexus `http://purl.obolibrary.org/obo/UBERON_8600103` #### Added -- [Marshall's gland](http://purl.obolibrary.org/obo/UBERON_0011149) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_117893](http://purl.obolibrary.org/obo/NCBITaxon_117893) - - -### Meissner's corpuscle `http://purl.obolibrary.org/obo/UBERON_0012450` -#### Removed -- [Meissner's corpuscle](http://purl.obolibrary.org/obo/UBERON_0012450) SubClassOf [mechanoreceptor](http://purl.obolibrary.org/obo/UBERON_0012449) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" +- [anterior internal vertebral venous plexus](http://purl.obolibrary.org/obo/UBERON_8600103) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -#### Added -- [Meissner's corpuscle](http://purl.obolibrary.org/obo/UBERON_0012450) SubClassOf [sensory corpuscle](http://purl.obolibrary.org/obo/UBERON_8900000) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" +- [anterior internal vertebral venous plexus](http://purl.obolibrary.org/obo/UBERON_8600103) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### P1 area of pallium (Myxiniformes) `http://purl.obolibrary.org/obo/UBERON_0014751` -#### Removed -- [P1 area of pallium (Myxiniformes)](http://purl.obolibrary.org/obo/UBERON_0014751) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7762](http://purl.obolibrary.org/obo/NCBITaxon_7762) +### antimesosalpinx `http://purl.obolibrary.org/obo/UBERON_8600117` #### Added -- [P1 area of pallium (Myxiniformes)](http://purl.obolibrary.org/obo/UBERON_0014751) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7762](http://purl.obolibrary.org/obo/NCBITaxon_7762) +- [antimesosalpinx](http://purl.obolibrary.org/obo/UBERON_8600117) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600117" +- [antimesosalpinx](http://purl.obolibrary.org/obo/UBERON_8600117) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "anti-mesosalpinx" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1101/2020.08.23.263772" -### P2 area of pallium (Myxiniformes) `http://purl.obolibrary.org/obo/UBERON_0014752` -#### Removed -- [P2 area of pallium (Myxiniformes)](http://purl.obolibrary.org/obo/UBERON_0014752) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7762](http://purl.obolibrary.org/obo/NCBITaxon_7762) +- [antimesosalpinx](http://purl.obolibrary.org/obo/UBERON_8600117) [label](http://www.w3.org/2000/01/rdf-schema#label) "antimesosalpinx" -#### Added -- [P2 area of pallium (Myxiniformes)](http://purl.obolibrary.org/obo/UBERON_0014752) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7762](http://purl.obolibrary.org/obo/NCBITaxon_7762) +- [antimesosalpinx](http://purl.obolibrary.org/obo/UBERON_8600117) [date](http://purl.org/dc/terms/date) "2024-11-14T09:59:53Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- [antimesosalpinx](http://purl.obolibrary.org/obo/UBERON_8600117) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) -### P3 area of pallium (Myxiniformes) `http://purl.obolibrary.org/obo/UBERON_0014753` -#### Removed -- [P3 area of pallium (Myxiniformes)](http://purl.obolibrary.org/obo/UBERON_0014753) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7762](http://purl.obolibrary.org/obo/NCBITaxon_7762) +- [antimesosalpinx](http://purl.obolibrary.org/obo/UBERON_8600117) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-7655-4833](https://orcid.org/0000-0001-7655-4833) -#### Added -- [P3 area of pallium (Myxiniformes)](http://purl.obolibrary.org/obo/UBERON_0014753) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7762](http://purl.obolibrary.org/obo/NCBITaxon_7762) +- [antimesosalpinx](http://purl.obolibrary.org/obo/UBERON_8600117) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "posterior free edge of mesosalpinx" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://orcid.org/0000-0001-7655-4833" +- [antimesosalpinx](http://purl.obolibrary.org/obo/UBERON_8600117) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "posterior free border of mesosalpinx" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://vanat.ahc.umn.edu/ungDissect/Lab17/Lab17.html" -### P4 area of pallium (Myxiniformes) `http://purl.obolibrary.org/obo/UBERON_0014754` -#### Removed -- [P4 area of pallium (Myxiniformes)](http://purl.obolibrary.org/obo/UBERON_0014754) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7762](http://purl.obolibrary.org/obo/NCBITaxon_7762) +- [antimesosalpinx](http://purl.obolibrary.org/obo/UBERON_8600117) [hasOBONamespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" -#### Added -- [P4 area of pallium (Myxiniformes)](http://purl.obolibrary.org/obo/UBERON_0014754) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7762](http://purl.obolibrary.org/obo/NCBITaxon_7762) +- [antimesosalpinx](http://purl.obolibrary.org/obo/UBERON_8600117) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A posterior free border of a mesosalpinx." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://vanat.ahc.umn.edu/ungDissect/Lab17/Lab17.html" +- Class: [antimesosalpinx](http://purl.obolibrary.org/obo/UBERON_8600117) -### P5 area of pallium (Myxiniformes) `http://purl.obolibrary.org/obo/UBERON_0014755` -#### Removed -- [P5 area of pallium (Myxiniformes)](http://purl.obolibrary.org/obo/UBERON_0014755) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7762](http://purl.obolibrary.org/obo/NCBITaxon_7762) +- [antimesosalpinx](http://purl.obolibrary.org/obo/UBERON_8600117) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [mesosalpinx](http://purl.obolibrary.org/obo/UBERON_0012331) -#### Added -- [P5 area of pallium (Myxiniformes)](http://purl.obolibrary.org/obo/UBERON_0014755) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7762](http://purl.obolibrary.org/obo/NCBITaxon_7762) +- [antimesosalpinx](http://purl.obolibrary.org/obo/UBERON_8600117) SubClassOf [mesentery](http://purl.obolibrary.org/obo/UBERON_0002095) -### Pacinian corpuscle `http://purl.obolibrary.org/obo/UBERON_0003719` -#### Removed -- [Pacinian corpuscle](http://purl.obolibrary.org/obo/UBERON_0003719) SubClassOf [mechanoreceptor](http://purl.obolibrary.org/obo/UBERON_0012449) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" +### aorta-gonad-mesonephros `http://purl.obolibrary.org/obo/UBERON_8700000` #### Added -- [Pacinian corpuscle](http://purl.obolibrary.org/obo/UBERON_0003719) SubClassOf [sensory corpuscle](http://purl.obolibrary.org/obo/UBERON_8900000) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" +- [aorta-gonad-mesonephros](http://purl.obolibrary.org/obo/UBERON_8700000) [date](http://purl.org/dc/terms/date) "2024-10-25T08:42:34Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- [aorta-gonad-mesonephros](http://purl.obolibrary.org/obo/UBERON_8700000) [hasOBONamespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" -### Peyer's patch `http://purl.obolibrary.org/obo/UBERON_0001211` -#### Removed -- [Peyer's patch](http://purl.obolibrary.org/obo/UBERON_0001211) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:PMID:20181529" +- [aorta-gonad-mesonephros](http://purl.obolibrary.org/obo/UBERON_8700000) [contributor](http://purl.org/dc/terms/contributor) [0009-0005-7919-4905](https://orcid.org/0009-0005-7919-4905) -#### Added -- [Peyer's patch](http://purl.obolibrary.org/obo/UBERON_0001211) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:PMID:20181529" +- [aorta-gonad-mesonephros](http://purl.obolibrary.org/obo/UBERON_8700000) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A transient organ in the developing embryo composed of the dorsal aorta, developing gonads, and embryonic kidney. This structure is located in the embryonic mesoderm and serves as the primary site for the generation of definitive hematopoietic stem cells." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:25686881" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:25749005" -### RO_0002160 `http://purl.obolibrary.org/obo/RO_0002160` -#### Removed -- ObjectProperty: [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:31813624" +- [aorta-gonad-mesonephros](http://purl.obolibrary.org/obo/UBERON_8700000) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8700000" +- [aorta-gonad-mesonephros](http://purl.obolibrary.org/obo/UBERON_8700000) [label](http://www.w3.org/2000/01/rdf-schema#label) "aorta-gonad-mesonephros" -### Ruffini nerve ending `http://purl.obolibrary.org/obo/UBERON_0012457` -#### Removed -- [Ruffini nerve ending](http://purl.obolibrary.org/obo/UBERON_0012457) SubClassOf [mechanoreceptor](http://purl.obolibrary.org/obo/UBERON_0012449) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "FMA" +- Class: [aorta-gonad-mesonephros](http://purl.obolibrary.org/obo/UBERON_8700000) -#### Added -- [Ruffini nerve ending](http://purl.obolibrary.org/obo/UBERON_0012457) SubClassOf [sensory corpuscle](http://purl.obolibrary.org/obo/UBERON_8900000) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "FMA" +- [aorta-gonad-mesonephros](http://purl.obolibrary.org/obo/UBERON_8700000) SubClassOf [embryonic structure](http://purl.obolibrary.org/obo/UBERON_0002050) -### Verson's gland `http://purl.obolibrary.org/obo/UBERON_0011147` +### arterial system `http://purl.obolibrary.org/obo/UBERON_0004572` #### Removed -- [Verson's gland](http://purl.obolibrary.org/obo/UBERON_0011147) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) +- [arterial system](http://purl.obolibrary.org/obo/UBERON_0004572) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -#### Added -- [Verson's gland](http://purl.obolibrary.org/obo/UBERON_0011147) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - -### Zymbal's gland `http://purl.obolibrary.org/obo/UBERON_1000022` -#### Removed -- [Zymbal's gland](http://purl.obolibrary.org/obo/UBERON_1000022) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9989](http://purl.obolibrary.org/obo/NCBITaxon_9989) +- [arterial system](http://purl.obolibrary.org/obo/UBERON_0004572) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -#### Added -- [Zymbal's gland](http://purl.obolibrary.org/obo/UBERON_1000022) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9989](http://purl.obolibrary.org/obo/NCBITaxon_9989) -### abdomen `http://purl.obolibrary.org/obo/UBERON_0000916` -#### Removed -- [abdomen](http://purl.obolibrary.org/obo/UBERON_0000916) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) +### artery of pterygoid canal `http://purl.obolibrary.org/obo/UBERON_8600100` #### Added -- [abdomen](http://purl.obolibrary.org/obo/UBERON_0000916) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) +- [artery of pterygoid canal](http://purl.obolibrary.org/obo/UBERON_8600100) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [artery of pterygoid canal](http://purl.obolibrary.org/obo/UBERON_8600100) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### abdominal ganglion of visceral hump `http://purl.obolibrary.org/obo/UBERON_0008964` -#### Removed -- [abdominal ganglion of visceral hump](http://purl.obolibrary.org/obo/UBERON_0008964) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) + +### ascending palatine artery `http://purl.obolibrary.org/obo/UBERON_8600095` #### Added -- [abdominal ganglion of visceral hump](http://purl.obolibrary.org/obo/UBERON_0008964) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) +- [ascending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600095) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ascending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600095) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### abducens nerve `http://purl.obolibrary.org/obo/UBERON_0001646` -#### Removed -- [abducens nerve](http://purl.obolibrary.org/obo/UBERON_0001646) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "found in all vertebrates except lampreys and hagfishes" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" +### ascending pharyngeal artery `http://purl.obolibrary.org/obo/UBERON_8600078` #### Added -- [abducens nerve](http://purl.obolibrary.org/obo/UBERON_0001646) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "found in all vertebrates except lampreys and hagfishes" +- [ascending pharyngeal artery](http://purl.obolibrary.org/obo/UBERON_8600078) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" +- [ascending pharyngeal artery](http://purl.obolibrary.org/obo/UBERON_8600078) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### aboral subdivision of organism `http://purl.obolibrary.org/obo/UBERON_0008259` -#### Removed -- [aboral subdivision of organism](http://purl.obolibrary.org/obo/UBERON_0008259) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) +### basivertebral vein `http://purl.obolibrary.org/obo/UBERON_8600066` #### Added -- [aboral subdivision of organism](http://purl.obolibrary.org/obo/UBERON_0008259) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) +- [basivertebral vein](http://purl.obolibrary.org/obo/UBERON_8600066) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [basivertebral vein](http://purl.obolibrary.org/obo/UBERON_8600066) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### accessory XI nerve `http://purl.obolibrary.org/obo/UBERON_0002019` -#### Removed -- [accessory XI nerve](http://purl.obolibrary.org/obo/UBERON_0002019) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) + +### bronchial venule `http://purl.obolibrary.org/obo/UBERON_8600067` #### Added -- [accessory XI nerve](http://purl.obolibrary.org/obo/UBERON_0002019) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) +- [bronchial venule](http://purl.obolibrary.org/obo/UBERON_8600067) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [bronchial venule](http://purl.obolibrary.org/obo/UBERON_8600067) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### accessory lymph sac `http://purl.obolibrary.org/obo/UBERON_0036261` + +### central gray substance of midbrain `http://purl.obolibrary.org/obo/UBERON_0003040` #### Removed -- [accessory lymph sac](http://purl.obolibrary.org/obo/UBERON_0036261) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8457](http://purl.obolibrary.org/obo/NCBITaxon_8457) +- [central gray substance of midbrain](http://purl.obolibrary.org/obo/UBERON_0003040) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ZFA:0000518" -#### Added -- [accessory lymph sac](http://purl.obolibrary.org/obo/UBERON_0036261) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8457](http://purl.obolibrary.org/obo/NCBITaxon_8457) -### accessory pretectal nucleus `http://purl.obolibrary.org/obo/UBERON_0035567` +### circulatory system `http://purl.obolibrary.org/obo/UBERON_0001009` #### Removed -- [accessory pretectal nucleus](http://purl.obolibrary.org/obo/UBERON_0035567) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32443](http://purl.obolibrary.org/obo/NCBITaxon_32443) +- [circulatory system](http://purl.obolibrary.org/obo/UBERON_0001009) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -#### Added -- [accessory pretectal nucleus](http://purl.obolibrary.org/obo/UBERON_0035567) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32443](http://purl.obolibrary.org/obo/NCBITaxon_32443) +- [circulatory system](http://purl.obolibrary.org/obo/UBERON_0001009) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### actinopterygian pyloric caecum `http://purl.obolibrary.org/obo/UBERON_4300174` -#### Removed -- [actinopterygian pyloric caecum](http://purl.obolibrary.org/obo/UBERON_4300174) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7898](http://purl.obolibrary.org/obo/NCBITaxon_7898) + +### circumflex humeral vein `http://purl.obolibrary.org/obo/UBERON_8600073` #### Added -- [actinopterygian pyloric caecum](http://purl.obolibrary.org/obo/UBERON_4300174) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7898](http://purl.obolibrary.org/obo/NCBITaxon_7898) +- [circumflex humeral vein](http://purl.obolibrary.org/obo/UBERON_8600073) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [circumflex humeral vein](http://purl.obolibrary.org/obo/UBERON_8600073) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### adenohypophysis `http://purl.obolibrary.org/obo/UBERON_0002196` + +### coelemic cavity lumen `http://purl.obolibrary.org/obo/UBERON_0002323` #### Removed -- [adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0002196) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:19084529" +- [coelemic cavity lumen](http://purl.obolibrary.org/obo/UBERON_0002323) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ZFA:0001438" -#### Added -- [adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0002196) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:19084529" +- [coelemic cavity lumen](http://purl.obolibrary.org/obo/UBERON_0002323) [external_definition](http://purl.obolibrary.org/obo/UBPROP_0000001) "Anatomical space, part of the trunk that contains the pericardial and pleuroperitoneal cavities[ZFA]." + - [source](http://www.geneontology.org/formats/oboInOwl#source) "ZFIN:curator" + - [date_retrieved](http://www.geneontology.org/formats/oboInOwl#date_retrieved) "2012-09-12" -### adrenal gland X zone `http://purl.obolibrary.org/obo/UBERON_0009024` -#### Removed -- [adrenal gland X zone](http://purl.obolibrary.org/obo/UBERON_0009024) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_10088](http://purl.obolibrary.org/obo/NCBITaxon_10088) + - [ontology](http://www.geneontology.org/formats/oboInOwl#ontology) "ZFA" -#### Added -- [adrenal gland X zone](http://purl.obolibrary.org/obo/UBERON_0009024) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_10088](http://purl.obolibrary.org/obo/NCBITaxon_10088) + - [external_class](http://www.geneontology.org/formats/oboInOwl#external_class) "ZFA:0001438" -### air capillary of parabronchus `http://purl.obolibrary.org/obo/UBERON_0012087` -#### Removed -- [air capillary of parabronchus](http://purl.obolibrary.org/obo/UBERON_0012087) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) + +### coelom `http://purl.obolibrary.org/obo/UBERON_0011997` #### Added -- [air capillary of parabronchus](http://purl.obolibrary.org/obo/UBERON_0012087) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) +- [coelom](http://purl.obolibrary.org/obo/UBERON_0011997) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ZFA:0001438" -### air sac `http://purl.obolibrary.org/obo/UBERON_0009060` +### concurrent branch afferent branchial artery `http://purl.obolibrary.org/obo/UBERON_2005013` #### Removed -- [air sac](http://purl.obolibrary.org/obo/UBERON_0009060) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) +- [concurrent branch afferent branchial artery](http://purl.obolibrary.org/obo/UBERON_2005013) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) -#### Added -- [air sac](http://purl.obolibrary.org/obo/UBERON_0009060) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) -### allantois `http://purl.obolibrary.org/obo/UBERON_0004340` -#### Removed -- [allantois](http://purl.obolibrary.org/obo/UBERON_0004340) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Hymans" +### craniocervical region `http://purl.obolibrary.org/obo/UBERON_0007811` #### Added -- [allantois](http://purl.obolibrary.org/obo/UBERON_0004340) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Hymans" +- [craniocervical region](http://purl.obolibrary.org/obo/UBERON_0007811) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ZFA:0001114" -### alular digit `http://purl.obolibrary.org/obo/UBERON_0012260` -#### Removed -- [alular digit](http://purl.obolibrary.org/obo/UBERON_0012260) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PhenotypeRCN:Oct2012" +### deep cervical vein `http://purl.obolibrary.org/obo/UBERON_8600059` #### Added -- [alular digit](http://purl.obolibrary.org/obo/UBERON_0012260) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PhenotypeRCN:Oct2012" +- [deep cervical vein](http://purl.obolibrary.org/obo/UBERON_8600059) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [deep cervical vein](http://purl.obolibrary.org/obo/UBERON_8600059) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### alveolus of lung `http://purl.obolibrary.org/obo/UBERON_0002299` -#### Removed -- [alveolus of lung](http://purl.obolibrary.org/obo/UBERON_0002299) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:12869615" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:12625309" +### deep lingual artery `http://purl.obolibrary.org/obo/UBERON_8600097` #### Added -- [alveolus of lung](http://purl.obolibrary.org/obo/UBERON_0002299) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:12869615" +- [deep lingual artery](http://purl.obolibrary.org/obo/UBERON_8600097) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:12625309" +- [deep lingual artery](http://purl.obolibrary.org/obo/UBERON_8600097) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### ambergris `http://purl.obolibrary.org/obo/UBERON_0009757` -#### Removed -- [ambergris](http://purl.obolibrary.org/obo/UBERON_0009757) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9753](http://purl.obolibrary.org/obo/NCBITaxon_9753) +### deep lingual vein `http://purl.obolibrary.org/obo/UBERON_8600069` #### Added -- [ambergris](http://purl.obolibrary.org/obo/UBERON_0009757) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9753](http://purl.obolibrary.org/obo/NCBITaxon_9753) - - -### ambiens muscle `http://purl.obolibrary.org/obo/UBERON_0013511` -#### Removed -- [ambiens muscle](http://purl.obolibrary.org/obo/UBERON_0013511) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) +- [deep lingual vein](http://purl.obolibrary.org/obo/UBERON_8600069) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -#### Added -- [ambiens muscle](http://purl.obolibrary.org/obo/UBERON_0013511) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) +- [deep lingual vein](http://purl.obolibrary.org/obo/UBERON_8600069) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### ambulacral area `http://purl.obolibrary.org/obo/UBERON_0008262` -#### Removed -- [ambulacral area](http://purl.obolibrary.org/obo/UBERON_0008262) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) +### descending palatine artery `http://purl.obolibrary.org/obo/UBERON_8600101` #### Added -- [ambulacral area](http://purl.obolibrary.org/obo/UBERON_0008262) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - +- [descending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600101) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### ammocoete `http://purl.obolibrary.org/obo/UBERON_0009101` -#### Removed -- [ammocoete](http://purl.obolibrary.org/obo/UBERON_0009101) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7745](http://purl.obolibrary.org/obo/NCBITaxon_7745) - -#### Added -- [ammocoete](http://purl.obolibrary.org/obo/UBERON_0009101) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7745](http://purl.obolibrary.org/obo/NCBITaxon_7745) +- [descending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600101) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### amnion `http://purl.obolibrary.org/obo/UBERON_0000305` -#### Removed -- [amnion](http://purl.obolibrary.org/obo/UBERON_0000305) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Hymans" +### dorsal lingual artery `http://purl.obolibrary.org/obo/UBERON_8600098` #### Added -- [amnion](http://purl.obolibrary.org/obo/UBERON_0000305) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Hymans" +- [dorsal lingual artery](http://purl.obolibrary.org/obo/UBERON_8600098) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [dorsal lingual artery](http://purl.obolibrary.org/obo/UBERON_8600098) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### amnioserosa `http://purl.obolibrary.org/obo/UBERON_0010302` -#### Removed -- [amnioserosa](http://purl.obolibrary.org/obo/UBERON_0010302) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "DOI:10.1073/pnas.0709145105" - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "Cyclorrhapha" +### dorsal lingual vein `http://purl.obolibrary.org/obo/UBERON_8600070` #### Added -- [amnioserosa](http://purl.obolibrary.org/obo/UBERON_0010302) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "DOI:10.1073/pnas.0709145105" +- [dorsal lingual vein](http://purl.obolibrary.org/obo/UBERON_8600070) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "Cyclorrhapha" +- [dorsal lingual vein](http://purl.obolibrary.org/obo/UBERON_8600070) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### amniotic fluid `http://purl.obolibrary.org/obo/UBERON_0000173` +### dorsal raphe nucleus `http://purl.obolibrary.org/obo/UBERON_0002043` #### Removed -- [amniotic fluid](http://purl.obolibrary.org/obo/UBERON_0000173) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) +- [dorsal raphe nucleus](http://purl.obolibrary.org/obo/UBERON_0002043) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ZFA:0000366" -#### Added -- [amniotic fluid](http://purl.obolibrary.org/obo/UBERON_0000173) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) -### amniotic fold `http://purl.obolibrary.org/obo/UBERON_0005971` -#### Removed -- [amniotic fold](http://purl.obolibrary.org/obo/UBERON_0005971) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) +### dural artery `http://purl.obolibrary.org/obo/UBERON_8600079` #### Added -- [amniotic fold](http://purl.obolibrary.org/obo/UBERON_0005971) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - +- [dural artery](http://purl.obolibrary.org/obo/UBERON_8600079) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### amphibian larval stage `http://purl.obolibrary.org/obo/UBERON_0004728` -#### Removed -- [amphibian larval stage](http://purl.obolibrary.org/obo/UBERON_0004728) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8292](http://purl.obolibrary.org/obo/NCBITaxon_8292) - -#### Added -- [amphibian larval stage](http://purl.obolibrary.org/obo/UBERON_0004728) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8292](http://purl.obolibrary.org/obo/NCBITaxon_8292) +- [dural artery](http://purl.obolibrary.org/obo/UBERON_8600079) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### amphid sensory organ `http://purl.obolibrary.org/obo/UBERON_0005067` +### efferent filamental artery `http://purl.obolibrary.org/obo/UBERON_2005018` #### Removed -- [amphid sensory organ](http://purl.obolibrary.org/obo/UBERON_0005067) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6231](http://purl.obolibrary.org/obo/NCBITaxon_6231) +- [efferent filamental artery](http://purl.obolibrary.org/obo/UBERON_2005018) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) -#### Added -- [amphid sensory organ](http://purl.obolibrary.org/obo/UBERON_0005067) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6231](http://purl.obolibrary.org/obo/NCBITaxon_6231) -### ampullary gland `http://purl.obolibrary.org/obo/UBERON_0009645` +### efferent lamellar arteriole `http://purl.obolibrary.org/obo/UBERON_2005019` #### Removed -- [ampullary gland](http://purl.obolibrary.org/obo/UBERON_0009645) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) +- [efferent lamellar arteriole](http://purl.obolibrary.org/obo/UBERON_2005019) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) -#### Added -- [ampullary gland](http://purl.obolibrary.org/obo/UBERON_0009645) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) -### anal sac `http://purl.obolibrary.org/obo/UBERON_0008978` +### efferent portion of pharyngeal arch artery `http://purl.obolibrary.org/obo/UBERON_2000202` #### Removed -- [anal sac](http://purl.obolibrary.org/obo/UBERON_0008978) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) +- [efferent portion of pharyngeal arch artery](http://purl.obolibrary.org/obo/UBERON_2000202) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) -#### Added -- [anal sac](http://purl.obolibrary.org/obo/UBERON_0008978) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) -### anal tooth `http://purl.obolibrary.org/obo/UBERON_0012468` -#### Removed -- [anal tooth](http://purl.obolibrary.org/obo/UBERON_0012468) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) +### embryonic craniocervical region `http://purl.obolibrary.org/obo/UBERON_8450003` #### Added -- [anal tooth](http://purl.obolibrary.org/obo/UBERON_0012468) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) +- [embryonic craniocervical region](http://purl.obolibrary.org/obo/UBERON_8450003) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A craniocervical region that is part of an embryo." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://orcid.org/0000-0002-6095-8718" +- [embryonic craniocervical region](http://purl.obolibrary.org/obo/UBERON_8450003) [date](http://purl.org/dc/terms/date) "2024-09-12T14:40:00Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) -### annelid peristomium `http://purl.obolibrary.org/obo/UBERON_0018650` -#### Removed -- [annelid peristomium](http://purl.obolibrary.org/obo/UBERON_0018650) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6340](http://purl.obolibrary.org/obo/NCBITaxon_6340) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" +- [embryonic craniocervical region](http://purl.obolibrary.org/obo/UBERON_8450003) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8450003" -#### Added -- [annelid peristomium](http://purl.obolibrary.org/obo/UBERON_0018650) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6340](http://purl.obolibrary.org/obo/NCBITaxon_6340) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" +- [embryonic craniocervical region](http://purl.obolibrary.org/obo/UBERON_8450003) [label](http://www.w3.org/2000/01/rdf-schema#label) "embryonic craniocervical region" +- [embryonic craniocervical region](http://purl.obolibrary.org/obo/UBERON_8450003) [hasOBONamespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" -### annelid pygidium `http://purl.obolibrary.org/obo/UBERON_0008880` -#### Removed -- [annelid pygidium](http://purl.obolibrary.org/obo/UBERON_0008880) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6340](http://purl.obolibrary.org/obo/NCBITaxon_6340) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" +- [embryonic craniocervical region](http://purl.obolibrary.org/obo/UBERON_8450003) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-6095-8718](https://orcid.org/0000-0002-6095-8718) -#### Added -- [annelid pygidium](http://purl.obolibrary.org/obo/UBERON_0008880) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6340](http://purl.obolibrary.org/obo/NCBITaxon_6340) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" +- Class: [embryonic craniocervical region](http://purl.obolibrary.org/obo/UBERON_8450003) +- [embryonic craniocervical region](http://purl.obolibrary.org/obo/UBERON_8450003) EquivalentTo [craniocervical region](http://purl.obolibrary.org/obo/UBERON_0007811) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [embryo](http://purl.obolibrary.org/obo/UBERON_0000922)) -### antenna `http://purl.obolibrary.org/obo/UBERON_0000972` -#### Removed -- [antenna](http://purl.obolibrary.org/obo/UBERON_0000972) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) +- [embryonic craniocervical region](http://purl.obolibrary.org/obo/UBERON_8450003) SubClassOf [craniocervical region](http://purl.obolibrary.org/obo/UBERON_0007811) -#### Added -- [antenna](http://purl.obolibrary.org/obo/UBERON_0000972) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) +- [embryonic craniocervical region](http://purl.obolibrary.org/obo/UBERON_8450003) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [embryo](http://purl.obolibrary.org/obo/UBERON_0000922) -### antennal gland `http://purl.obolibrary.org/obo/UBERON_0009963` -#### Removed -- [antennal gland](http://purl.obolibrary.org/obo/UBERON_0009963) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6657](http://purl.obolibrary.org/obo/NCBITaxon_6657) +### esophageal vein `http://purl.obolibrary.org/obo/UBERON_8600053` #### Added -- [antennal gland](http://purl.obolibrary.org/obo/UBERON_0009963) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6657](http://purl.obolibrary.org/obo/NCBITaxon_6657) +- [esophageal vein](http://purl.obolibrary.org/obo/UBERON_8600053) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [esophageal vein](http://purl.obolibrary.org/obo/UBERON_8600053) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### anterior ethmoidal vein `http://purl.obolibrary.org/obo/UBERON_8420002` - -#### Added -- [anterior ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420002) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140) -- [anterior ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420002) [date](http://purl.org/dc/terms/date) "2024-08-28T09:55:00Z" +### external nasal vein `http://purl.obolibrary.org/obo/UBERON_8600087` -- [anterior ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420002) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:51771" +#### Added +- [external nasal vein](http://purl.obolibrary.org/obo/UBERON_8600087) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -- [anterior ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420002) [label](http://www.w3.org/2000/01/rdf-schema#label) "anterior ethmoidal vein" +- [external nasal vein](http://purl.obolibrary.org/obo/UBERON_8600087) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -- [anterior ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420002) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An ethmoidal vein that accompanies an anterior ethmoidal artery. The anterior ethmoidal vein normally drains into the inferior root of the superior ophthalmic vein." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://doi.org/10.1167/iovs.02-0865" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://doi.org/10.1007/978-3-031-40697-3_23" +### fallopian tube `http://purl.obolibrary.org/obo/UBERON_0003889` +#### Removed +- [fallopian tube](http://purl.obolibrary.org/obo/UBERON_0003889) [hasRelatedSynonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "fallopian tubes" -- Class: [anterior ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420002) +- [fallopian tube](http://purl.obolibrary.org/obo/UBERON_0003889) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "mammalian oviduct" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/p/geneontology/ontology-requests/8397/" -- [anterior ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420002) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [superior ophthalmic vein](http://purl.obolibrary.org/obo/UBERON_0011192) +#### Added +- [fallopian tube](http://purl.obolibrary.org/obo/UBERON_0003889) [hasRelatedSynonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "fallopian tubes" + - [hasSynonymType](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [OMO_0003004](http://purl.obolibrary.org/obo/OMO_0003004) -- [anterior ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420002) SubClassOf [ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420001) +- [fallopian tube](http://purl.obolibrary.org/obo/UBERON_0003889) [hasBroadSynonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "mammalian oviduct" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/p/geneontology/ontology-requests/8397/" -### anterior humeral circumflex artery `http://purl.obolibrary.org/obo/UBERON_8600106` +### follicle associated epithelium `http://purl.obolibrary.org/obo/UBERON_8700001` #### Added -- [anterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600106) [label](http://www.w3.org/2000/01/rdf-schema#label) "anterior humeral circumflex artery" +- [follicle associated epithelium](http://purl.obolibrary.org/obo/UBERON_8700001) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A specialized epithelial layer overlying the luminal surface of lymphoid follicles in gut-associated lymphoid tissue. It is found in Peyer's patches of the small intestine and appendix in humans and in the intestine and caecal patches in mice. This layer contains specialised M cells and has fewer goblet cells compared to surrounding tissue. This layer plays a crucial role in mucosal immune surveillance." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DOI:10.4061/2010/823710" -- [anterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600106) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:22680" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DOI:10.1007/s00702-022-02561-x" -- [anterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600106) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that branches from the axilliary artery and supplies the deltoid, biceps brachii, and coracobrachialis muscles, the glenohumeral joint, the proximal humeral head, and the skin overlying the anterior aspect of the proximal humerus. This artery courses laterally across the anterior surface of the humerus and anastomoses with the posterior humeral circumflex artery." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://www.elsevier.com/resources/anatomy/cardiovascular-system/arteries/anterior-circumflex-humeral-artery/20091" +- [follicle associated epithelium](http://purl.obolibrary.org/obo/UBERON_8700001) [hasOBONamespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" -- [anterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600106) [date](http://purl.org/dc/terms/date) "2024-08-20T09:53:48Z" +- [follicle associated epithelium](http://purl.obolibrary.org/obo/UBERON_8700001) [label](http://www.w3.org/2000/01/rdf-schema#label) "follicle associated epithelium" -- [anterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600106) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- [follicle associated epithelium](http://purl.obolibrary.org/obo/UBERON_8700001) [date](http://purl.org/dc/terms/date) "2024-11-07T11:44:27Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) -- Class: [anterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600106) +- [follicle associated epithelium](http://purl.obolibrary.org/obo/UBERON_8700001) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "FAE" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DOI:10.1007/s00702-022-02561-x" -- [anterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600106) SubClassOf ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [glenohumeral joint](http://purl.obolibrary.org/obo/UBERON_0001470)) and ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [deltoid](http://purl.obolibrary.org/obo/UBERON_0001476)) and ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [coracobrachialis muscle](http://purl.obolibrary.org/obo/UBERON_0001505)) and ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [biceps brachii](http://purl.obolibrary.org/obo/UBERON_0001507)) and ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [upper arm skin](http://purl.obolibrary.org/obo/UBERON_0004263)) and ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [proximal head of humerus](http://purl.obolibrary.org/obo/UBERON_0006801)) +- [follicle associated epithelium](http://purl.obolibrary.org/obo/UBERON_8700001) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8700001" -- [anterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600106) SubClassOf [artery](http://purl.obolibrary.org/obo/UBERON_0001637) +- [follicle associated epithelium](http://purl.obolibrary.org/obo/UBERON_8700001) [contributor](http://purl.org/dc/terms/contributor) [0009-0005-7919-4905](https://orcid.org/0009-0005-7919-4905) -- [anterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600106) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [shoulder](http://purl.obolibrary.org/obo/UBERON_0001467) +- Class: [follicle associated epithelium](http://purl.obolibrary.org/obo/UBERON_8700001) -- [anterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600106) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [axillary artery](http://purl.obolibrary.org/obo/UBERON_0001394) +- [follicle associated epithelium](http://purl.obolibrary.org/obo/UBERON_8700001) SubClassOf [Peyer's patch epithelium](http://purl.obolibrary.org/obo/UBERON_0004693) -### anterior intestinal portal `http://purl.obolibrary.org/obo/UBERON_0009890` -#### Removed -- [anterior intestinal portal](http://purl.obolibrary.org/obo/UBERON_0009890) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) +### glandular venous plexus `http://purl.obolibrary.org/obo/UBERON_8600072` #### Added -- [anterior intestinal portal](http://purl.obolibrary.org/obo/UBERON_0009890) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### anterior lingual gland `http://purl.obolibrary.org/obo/UBERON_0006330` -#### Removed -- [anterior lingual gland](http://purl.obolibrary.org/obo/UBERON_0006330) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) +- [glandular venous plexus](http://purl.obolibrary.org/obo/UBERON_8600072) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -#### Added -- [anterior lingual gland](http://purl.obolibrary.org/obo/UBERON_0006330) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) +- [glandular venous plexus](http://purl.obolibrary.org/obo/UBERON_8600072) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### anterior pretectal nucleus `http://purl.obolibrary.org/obo/UBERON_0034918` +### head `http://purl.obolibrary.org/obo/UBERON_0000033` #### Removed -- [anterior pretectal nucleus](http://purl.obolibrary.org/obo/UBERON_0034918) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" +- [head](http://purl.obolibrary.org/obo/UBERON_0000033) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ZFA:0001114" -#### Added -- [anterior pretectal nucleus](http://purl.obolibrary.org/obo/UBERON_0034918) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" -### anterior region of body `http://purl.obolibrary.org/obo/UBERON_0000153` -#### Removed -- [anterior region of body](http://purl.obolibrary.org/obo/UBERON_0000153) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) +### hepatic portal venule `http://purl.obolibrary.org/obo/UBERON_8600085` #### Added -- [anterior region of body](http://purl.obolibrary.org/obo/UBERON_0000153) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) +- [hepatic portal venule](http://purl.obolibrary.org/obo/UBERON_8600085) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### anterior tegmental nucleus `http://purl.obolibrary.org/obo/UBERON_0010036` -#### Removed -- [anterior tegmental nucleus](http://purl.obolibrary.org/obo/UBERON_0010036) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9989](http://purl.obolibrary.org/obo/NCBITaxon_9989) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "NN" - -#### Added -- [anterior tegmental nucleus](http://purl.obolibrary.org/obo/UBERON_0010036) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9989](http://purl.obolibrary.org/obo/NCBITaxon_9989) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "NN" +- [hepatic portal venule](http://purl.obolibrary.org/obo/UBERON_8600085) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### antler `http://purl.obolibrary.org/obo/UBERON_0006971` -#### Removed -- [antler](http://purl.obolibrary.org/obo/UBERON_0006971) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9850](http://purl.obolibrary.org/obo/NCBITaxon_9850) +### hypophyseal vein `http://purl.obolibrary.org/obo/UBERON_8600090` #### Added -- [antler](http://purl.obolibrary.org/obo/UBERON_0006971) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9850](http://purl.obolibrary.org/obo/NCBITaxon_9850) - - -### aortic system `http://purl.obolibrary.org/obo/UBERON_0010191` -#### Removed -- [aortic system](http://purl.obolibrary.org/obo/UBERON_0010191) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) +- [hypophyseal vein](http://purl.obolibrary.org/obo/UBERON_8600090) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -#### Added -- [aortic system](http://purl.obolibrary.org/obo/UBERON_0010191) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) +- [hypophyseal vein](http://purl.obolibrary.org/obo/UBERON_8600090) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### appendage `http://purl.obolibrary.org/obo/UBERON_0000026` -#### Removed -- [appendage](http://purl.obolibrary.org/obo/UBERON_0000026) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) +### incisor artery `http://purl.obolibrary.org/obo/UBERON_8600086` #### Added -- [appendage](http://purl.obolibrary.org/obo/UBERON_0000026) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### appendage girdle complex `http://purl.obolibrary.org/obo/UBERON_0010707` -#### Removed -- [appendage girdle complex](http://purl.obolibrary.org/obo/UBERON_0010707) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) +- [incisor artery](http://purl.obolibrary.org/obo/UBERON_8600086) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -#### Added -- [appendage girdle complex](http://purl.obolibrary.org/obo/UBERON_0010707) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) +- [incisor artery](http://purl.obolibrary.org/obo/UBERON_8600086) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### appendage girdle region `http://purl.obolibrary.org/obo/UBERON_0007823` -#### Removed -- [appendage girdle region](http://purl.obolibrary.org/obo/UBERON_0007823) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) +### inferior anastomotic vein `http://purl.obolibrary.org/obo/UBERON_8600091` #### Added -- [appendage girdle region](http://purl.obolibrary.org/obo/UBERON_0007823) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - +- [inferior anastomotic vein](http://purl.obolibrary.org/obo/UBERON_8600091) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### appendicocostalis muscle `http://purl.obolibrary.org/obo/UBERON_0012100` -#### Removed -- [appendicocostalis muscle](http://purl.obolibrary.org/obo/UBERON_0012100) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [appendicocostalis muscle](http://purl.obolibrary.org/obo/UBERON_0012100) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) +- [inferior anastomotic vein](http://purl.obolibrary.org/obo/UBERON_8600091) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### appendicular skeleton `http://purl.obolibrary.org/obo/UBERON_0002091` +### inner medulla vasa recta ascending limb `http://purl.obolibrary.org/obo/UBERON_0009092` #### Removed -- [appendicular skeleton](http://purl.obolibrary.org/obo/UBERON_0002091) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - -#### Added -- [appendicular skeleton](http://purl.obolibrary.org/obo/UBERON_0002091) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - +- [inner medulla vasa recta ascending limb](http://purl.obolibrary.org/obo/UBERON_0009092) [label](http://www.w3.org/2000/01/rdf-schema#label) "inner medulla vasa recta ascending limb" -### arachnoid mater `http://purl.obolibrary.org/obo/UBERON_0002362` -#### Removed -- [arachnoid mater](http://purl.obolibrary.org/obo/UBERON_0002362) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0073040584" +- [inner medulla vasa recta ascending limb](http://purl.obolibrary.org/obo/UBERON_0009092) SubClassOf [mesoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004120) #### Added -- [arachnoid mater](http://purl.obolibrary.org/obo/UBERON_0002362) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0073040584" +- [inner medulla vasa recta ascending limb](http://purl.obolibrary.org/obo/UBERON_0009092) [label](http://www.w3.org/2000/01/rdf-schema#label) "inner medulla ascending vasa recta" -### arcopallium `http://purl.obolibrary.org/obo/UBERON_0007350` +### inner medulla vasa recta descending limb `http://purl.obolibrary.org/obo/UBERON_0009089` #### Removed -- [arcopallium](http://purl.obolibrary.org/obo/UBERON_0007350) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) +- [inner medulla vasa recta descending limb](http://purl.obolibrary.org/obo/UBERON_0009089) [label](http://www.w3.org/2000/01/rdf-schema#label) "inner medulla vasa recta descending limb" + +- [inner medulla vasa recta descending limb](http://purl.obolibrary.org/obo/UBERON_0009089) SubClassOf [mesoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004120) #### Added -- [arcopallium](http://purl.obolibrary.org/obo/UBERON_0007350) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) +- [inner medulla vasa recta descending limb](http://purl.obolibrary.org/obo/UBERON_0009089) [label](http://www.w3.org/2000/01/rdf-schema#label) "inner medulla descending vasa recta" -### area X of basal ganglion `http://purl.obolibrary.org/obo/UBERON_0035807` +### inner renal medulla vasa recta `http://purl.obolibrary.org/obo/UBERON_0004776` #### Removed -- [area X of basal ganglion](http://purl.obolibrary.org/obo/UBERON_0035807) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9126](http://purl.obolibrary.org/obo/NCBITaxon_9126) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "GOC:mr" +- [inner renal medulla vasa recta](http://purl.obolibrary.org/obo/UBERON_0004776) SubClassOf [renal venous blood vessel](http://purl.obolibrary.org/obo/UBERON_0014401) + +- [inner renal medulla vasa recta](http://purl.obolibrary.org/obo/UBERON_0004776) SubClassOf [vein of abdomen](http://purl.obolibrary.org/obo/UBERON_0013126) -#### Added -- [area X of basal ganglion](http://purl.obolibrary.org/obo/UBERON_0035807) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9126](http://purl.obolibrary.org/obo/NCBITaxon_9126) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "GOC:mr" -### arrector muscle of hair `http://purl.obolibrary.org/obo/UBERON_0002033` +### intervertebral vein `http://purl.obolibrary.org/obo/UBERON_8600104` #### Added -- [arrector muscle of hair](http://purl.obolibrary.org/obo/UBERON_0002033) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [intervertebral vein](http://purl.obolibrary.org/obo/UBERON_8600104) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -- [arrector muscle of hair](http://purl.obolibrary.org/obo/UBERON_0002033) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [intervertebral vein](http://purl.obolibrary.org/obo/UBERON_8600104) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### arthropod fat body `http://purl.obolibrary.org/obo/UBERON_0003917` -#### Removed -- [arthropod fat body](http://purl.obolibrary.org/obo/UBERON_0003917) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) +### intra-acinar arteriole `http://purl.obolibrary.org/obo/UBERON_8600094` #### Added -- [arthropod fat body](http://purl.obolibrary.org/obo/UBERON_0003917) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - +- [intra-acinar arteriole](http://purl.obolibrary.org/obo/UBERON_8600094) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### arthropod hepatopancreas `http://purl.obolibrary.org/obo/UBERON_0010266` -#### Removed -- [arthropod hepatopancreas](http://purl.obolibrary.org/obo/UBERON_0010266) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6657](http://purl.obolibrary.org/obo/NCBITaxon_6657) - -#### Added -- [arthropod hepatopancreas](http://purl.obolibrary.org/obo/UBERON_0010266) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6657](http://purl.obolibrary.org/obo/NCBITaxon_6657) +- [intra-acinar arteriole](http://purl.obolibrary.org/obo/UBERON_8600094) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### arthropod occiput `http://purl.obolibrary.org/obo/UBERON_0003155` -#### Removed -- [arthropod occiput](http://purl.obolibrary.org/obo/UBERON_0003155) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) +### intra-acinar venule `http://purl.obolibrary.org/obo/UBERON_8600061` #### Added -- [arthropod occiput](http://purl.obolibrary.org/obo/UBERON_0003155) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) +- [intra-acinar venule](http://purl.obolibrary.org/obo/UBERON_8600061) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [intra-acinar venule](http://purl.obolibrary.org/obo/UBERON_8600061) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### arthropod optic lobe `http://purl.obolibrary.org/obo/UBERON_0006795` -#### Removed -- [arthropod optic lobe](http://purl.obolibrary.org/obo/UBERON_0006795) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) + +### lateral femoral circumflex vein `http://purl.obolibrary.org/obo/UBERON_8600065` #### Added -- [arthropod optic lobe](http://purl.obolibrary.org/obo/UBERON_0006795) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) +- [lateral femoral circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600065) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [lateral femoral circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600065) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### arthropod sensillum `http://purl.obolibrary.org/obo/UBERON_0002536` -#### Removed -- [arthropod sensillum](http://purl.obolibrary.org/obo/UBERON_0002536) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) + +### lateral sacral vein `http://purl.obolibrary.org/obo/UBERON_8600056` #### Added -- [arthropod sensillum](http://purl.obolibrary.org/obo/UBERON_0002536) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) +- [lateral sacral vein](http://purl.obolibrary.org/obo/UBERON_8600056) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [lateral sacral vein](http://purl.obolibrary.org/obo/UBERON_8600056) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### arthropod sternum `http://purl.obolibrary.org/obo/UBERON_0003130` -#### Removed -- [arthropod sternum](http://purl.obolibrary.org/obo/UBERON_0003130) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) + +### left anterior descending artery `http://purl.obolibrary.org/obo/UBERON_8600102` #### Added -- [arthropod sternum](http://purl.obolibrary.org/obo/UBERON_0003130) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) +- [left anterior descending artery](http://purl.obolibrary.org/obo/UBERON_8600102) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [left anterior descending artery](http://purl.obolibrary.org/obo/UBERON_8600102) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### arthropod tagma `http://purl.obolibrary.org/obo/UBERON_6000002` -#### Removed -- [arthropod tagma](http://purl.obolibrary.org/obo/UBERON_6000002) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) + +### lumbar vein `http://purl.obolibrary.org/obo/UBERON_8600105` #### Added -- [arthropod tagma](http://purl.obolibrary.org/obo/UBERON_6000002) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) +- [lumbar vein](http://purl.obolibrary.org/obo/UBERON_8600105) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [lumbar vein](http://purl.obolibrary.org/obo/UBERON_8600105) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### arthropod tibia `http://purl.obolibrary.org/obo/UBERON_0003131` -#### Removed -- [arthropod tibia](http://purl.obolibrary.org/obo/UBERON_0003131) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) + +### lung `http://purl.obolibrary.org/obo/UBERON_0002048` #### Added -- [arthropod tibia](http://purl.obolibrary.org/obo/UBERON_0003131) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) +- [lung](http://purl.obolibrary.org/obo/UBERON_0002048) SubClassOf [BFO_0000051](http://purl.obolibrary.org/obo/BFO_0000051) some [bronchus](http://purl.obolibrary.org/obo/UBERON_0002185) -### articular system `http://purl.obolibrary.org/obo/UBERON_0004770` -#### Removed -- [articular system](http://purl.obolibrary.org/obo/UBERON_0004770) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) +### lymphatic part of lymphoid system `http://purl.obolibrary.org/obo/UBERON_0006558` #### Added -- [articular system](http://purl.obolibrary.org/obo/UBERON_0004770) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) +- [lymphatic part of lymphoid system](http://purl.obolibrary.org/obo/UBERON_0006558) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [lymphatic part of lymphoid system](http://purl.obolibrary.org/obo/UBERON_0006558) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### ascidian ampulla `http://purl.obolibrary.org/obo/UBERON_0009474` -#### Removed -- [ascidian ampulla](http://purl.obolibrary.org/obo/UBERON_0009474) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) + +### lymphoid system `http://purl.obolibrary.org/obo/UBERON_0002465` #### Added -- [ascidian ampulla](http://purl.obolibrary.org/obo/UBERON_0009474) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) +- [lymphoid system](http://purl.obolibrary.org/obo/UBERON_0002465) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [lymphoid system](http://purl.obolibrary.org/obo/UBERON_0002465) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### ascidian anterior sensory vesicle `http://purl.obolibrary.org/obo/UBERON_0009892` -#### Removed -- [ascidian anterior sensory vesicle](http://purl.obolibrary.org/obo/UBERON_0009892) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) + +### mental vein `http://purl.obolibrary.org/obo/UBERON_8600068` #### Added -- [ascidian anterior sensory vesicle](http://purl.obolibrary.org/obo/UBERON_0009892) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) +- [mental vein](http://purl.obolibrary.org/obo/UBERON_8600068) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [mental vein](http://purl.obolibrary.org/obo/UBERON_8600068) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### ascidian digestive gland `http://purl.obolibrary.org/obo/UBERON_0009860` +### mesosalpinx `http://purl.obolibrary.org/obo/UBERON_0012331` #### Removed -- [ascidian digestive gland](http://purl.obolibrary.org/obo/UBERON_0009860) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) +- [mesosalpinx](http://purl.obolibrary.org/obo/UBERON_0012331) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "The mesosalpinx is part of the lining of the abdominal cavity in higher vertebrates, specifically the portion of the broad ligament that stretches from the uterine tube to the level of the ovary." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Mesosalpinx" #### Added -- [ascidian digestive gland](http://purl.obolibrary.org/obo/UBERON_0009860) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) +- [mesosalpinx](http://purl.obolibrary.org/obo/UBERON_0012331) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A serous layer that is part of the peritoneal lining of the abdominal cavity in higher vertebrates, specifically the portion of the broad ligament that stretches from the uterine (fallopian) tube to the ovary. It is made up of epithelial cells of mesothelium and a mesh of serous membrane lining." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Mesosalpinx" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1016/B978-0-12-801238-3.64401-X" -### ascidian neural complex `http://purl.obolibrary.org/obo/UBERON_0009861` -#### Removed -- [ascidian neural complex](http://purl.obolibrary.org/obo/UBERON_0009861) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:29763118" -#### Added -- [ascidian neural complex](http://purl.obolibrary.org/obo/UBERON_0009861) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) +- [mesosalpinx](http://purl.obolibrary.org/obo/UBERON_0012331) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "serous layer of fallopian tube" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1016/B978-0-12-801238-3.64401-X" +- [mesosalpinx](http://purl.obolibrary.org/obo/UBERON_0012331) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "fallopian tube mesosalpinx" -### ascidian neural gland `http://purl.obolibrary.org/obo/UBERON_0009864` -#### Removed -- [ascidian neural gland](http://purl.obolibrary.org/obo/UBERON_0009864) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7713](http://purl.obolibrary.org/obo/NCBITaxon_7713) +- [mesosalpinx](http://purl.obolibrary.org/obo/UBERON_0012331) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "mesentery of fallopian tube" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:29763118" -#### Added -- [ascidian neural gland](http://purl.obolibrary.org/obo/UBERON_0009864) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7713](http://purl.obolibrary.org/obo/NCBITaxon_7713) +- [mesosalpinx](http://purl.obolibrary.org/obo/UBERON_0012331) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "mesentery of uterine tube" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:29763118" +- [mesosalpinx](http://purl.obolibrary.org/obo/UBERON_0012331) SubClassOf [RO_0002221](http://purl.obolibrary.org/obo/RO_0002221) some [fallopian tube](http://purl.obolibrary.org/obo/UBERON_0003889) -### atrial siphon `http://purl.obolibrary.org/obo/UBERON_0009721` -#### Removed -- [atrial siphon](http://purl.obolibrary.org/obo/UBERON_0009721) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) + +### middle hemorrhoidal vein `http://purl.obolibrary.org/obo/UBERON_8600057` #### Added -- [atrial siphon](http://purl.obolibrary.org/obo/UBERON_0009721) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) +- [middle hemorrhoidal vein](http://purl.obolibrary.org/obo/UBERON_8600057) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [middle hemorrhoidal vein](http://purl.obolibrary.org/obo/UBERON_8600057) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### auditory bulla `http://purl.obolibrary.org/obo/UBERON_0008959` -#### Removed -- [auditory bulla](http://purl.obolibrary.org/obo/UBERON_0008959) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32525](http://purl.obolibrary.org/obo/NCBITaxon_32525) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" + +### mucosa of ascending colon `http://purl.obolibrary.org/obo/UBERON_0004990` #### Added -- [auditory bulla](http://purl.obolibrary.org/obo/UBERON_0008959) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32525](http://purl.obolibrary.org/obo/NCBITaxon_32525) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" +- [mucosa of ascending colon](http://purl.obolibrary.org/obo/UBERON_0004990) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [mucosa of ascending colon](http://purl.obolibrary.org/obo/UBERON_0004990) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### autonomic nervous system `http://purl.obolibrary.org/obo/UBERON_0002410` -#### Removed -- [autonomic nervous system](http://purl.obolibrary.org/obo/UBERON_0002410) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) + +### mucosa of descending colon `http://purl.obolibrary.org/obo/UBERON_0004992` #### Added -- [autonomic nervous system](http://purl.obolibrary.org/obo/UBERON_0002410) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) +- [mucosa of descending colon](http://purl.obolibrary.org/obo/UBERON_0004992) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [mucosa of descending colon](http://purl.obolibrary.org/obo/UBERON_0004992) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### avian uterine tube isthmus `http://purl.obolibrary.org/obo/UBERON_0013519` -#### Removed -- [avian uterine tube isthmus](http://purl.obolibrary.org/obo/UBERON_0013519) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) + +### mucosa of rectum `http://purl.obolibrary.org/obo/UBERON_0003346` #### Added -- [avian uterine tube isthmus](http://purl.obolibrary.org/obo/UBERON_0013519) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) +- [mucosa of rectum](http://purl.obolibrary.org/obo/UBERON_0003346) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [mucosa of rectum](http://purl.obolibrary.org/obo/UBERON_0003346) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### axial mesoderm `http://purl.obolibrary.org/obo/UBERON_0003068` -#### Removed -- [axial mesoderm](http://purl.obolibrary.org/obo/UBERON_0003068) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) + +### mucosa of sigmoid colon `http://purl.obolibrary.org/obo/UBERON_0004993` #### Added -- [axial mesoderm](http://purl.obolibrary.org/obo/UBERON_0003068) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) +- [mucosa of sigmoid colon](http://purl.obolibrary.org/obo/UBERON_0004993) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [mucosa of sigmoid colon](http://purl.obolibrary.org/obo/UBERON_0004993) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### axilla skin `http://purl.obolibrary.org/obo/UBERON_0015474` + +### mucosa of transverse colon `http://purl.obolibrary.org/obo/UBERON_0004991` #### Added -- [axilla skin](http://purl.obolibrary.org/obo/UBERON_0015474) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "skin of armpit" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:38565739" +- [mucosa of transverse colon](http://purl.obolibrary.org/obo/UBERON_0004991) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [mucosa of transverse colon](http://purl.obolibrary.org/obo/UBERON_0004991) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### axochord `http://purl.obolibrary.org/obo/UBERON_0035147` +### outer medulla vasa recta ascending limb `http://purl.obolibrary.org/obo/UBERON_0009093` #### Removed -- [axochord](http://purl.obolibrary.org/obo/UBERON_0035147) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6340](http://purl.obolibrary.org/obo/NCBITaxon_6340) +- [outer medulla vasa recta ascending limb](http://purl.obolibrary.org/obo/UBERON_0009093) [label](http://www.w3.org/2000/01/rdf-schema#label) "outer medulla vasa recta ascending limb" + +- [outer medulla vasa recta ascending limb](http://purl.obolibrary.org/obo/UBERON_0009093) SubClassOf [mesoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004120) #### Added -- [axochord](http://purl.obolibrary.org/obo/UBERON_0035147) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6340](http://purl.obolibrary.org/obo/NCBITaxon_6340) +- [outer medulla vasa recta ascending limb](http://purl.obolibrary.org/obo/UBERON_0009093) [label](http://www.w3.org/2000/01/rdf-schema#label) "outer medulla ascending vasa recta" -### baleen feeding system `http://purl.obolibrary.org/obo/UBERON_0016618` +### outer medulla vasa recta descending limb `http://purl.obolibrary.org/obo/UBERON_0009090` #### Removed -- [baleen feeding system](http://purl.obolibrary.org/obo/UBERON_0016618) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9761](http://purl.obolibrary.org/obo/NCBITaxon_9761) +- [outer medulla vasa recta descending limb](http://purl.obolibrary.org/obo/UBERON_0009090) [label](http://www.w3.org/2000/01/rdf-schema#label) "outer medulla vasa recta descending limb" + +- [outer medulla vasa recta descending limb](http://purl.obolibrary.org/obo/UBERON_0009090) SubClassOf [mesoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004120) #### Added -- [baleen feeding system](http://purl.obolibrary.org/obo/UBERON_0016618) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9761](http://purl.obolibrary.org/obo/NCBITaxon_9761) +- [outer medulla vasa recta descending limb](http://purl.obolibrary.org/obo/UBERON_0009090) [label](http://www.w3.org/2000/01/rdf-schema#label) "outer medulla descending vasa recta" -### baleen plate bristle `http://purl.obolibrary.org/obo/UBERON_0012106` +### outer renal medulla vasa recta `http://purl.obolibrary.org/obo/UBERON_0004775` #### Removed -- [baleen plate bristle](http://purl.obolibrary.org/obo/UBERON_0012106) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9761](http://purl.obolibrary.org/obo/NCBITaxon_9761) +- [outer renal medulla vasa recta](http://purl.obolibrary.org/obo/UBERON_0004775) SubClassOf [vein of abdomen](http://purl.obolibrary.org/obo/UBERON_0013126) + +- [outer renal medulla vasa recta](http://purl.obolibrary.org/obo/UBERON_0004775) SubClassOf [renal venous blood vessel](http://purl.obolibrary.org/obo/UBERON_0014401) -#### Added -- [baleen plate bristle](http://purl.obolibrary.org/obo/UBERON_0012106) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9761](http://purl.obolibrary.org/obo/NCBITaxon_9761) -### barnacle cement gland `http://purl.obolibrary.org/obo/UBERON_0015213` +### oviduct `http://purl.obolibrary.org/obo/UBERON_0000993` #### Removed -- [barnacle cement gland](http://purl.obolibrary.org/obo/UBERON_0015213) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) +- [oviduct](http://purl.obolibrary.org/obo/UBERON_0000993) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "uterine tube" #### Added -- [barnacle cement gland](http://purl.obolibrary.org/obo/UBERON_0015213) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) +- [oviduct](http://purl.obolibrary.org/obo/UBERON_0000993) [hasNarrowSynonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "uterine tube" -### baroreceptor `http://purl.obolibrary.org/obo/UBERON_0004019` -#### Removed -- [baroreceptor](http://purl.obolibrary.org/obo/UBERON_0004019) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) +### percardiacophrenic artery `http://purl.obolibrary.org/obo/UBERON_8600081` #### Added -- [baroreceptor](http://purl.obolibrary.org/obo/UBERON_0004019) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) +- [percardiacophrenic artery](http://purl.obolibrary.org/obo/UBERON_8600081) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [percardiacophrenic artery](http://purl.obolibrary.org/obo/UBERON_8600081) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### barrel cortex `http://purl.obolibrary.org/obo/UBERON_0010415` -#### Removed -- [barrel cortex](http://purl.obolibrary.org/obo/UBERON_0010415) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9989](http://purl.obolibrary.org/obo/NCBITaxon_9989) + +### pericardial artery `http://purl.obolibrary.org/obo/UBERON_8600080` #### Added -- [barrel cortex](http://purl.obolibrary.org/obo/UBERON_0010415) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9989](http://purl.obolibrary.org/obo/NCBITaxon_9989) +- [pericardial artery](http://purl.obolibrary.org/obo/UBERON_8600080) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [pericardial artery](http://purl.obolibrary.org/obo/UBERON_8600080) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### basement membrane of epithelium `http://purl.obolibrary.org/obo/UBERON_0005769` + +### pharyngeal arch `http://purl.obolibrary.org/obo/UBERON_0002539` #### Removed -- [basement membrane of epithelium](http://purl.obolibrary.org/obo/UBERON_0005769) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33208](http://purl.obolibrary.org/obo/NCBITaxon_33208) +- [pharyngeal arch](http://purl.obolibrary.org/obo/UBERON_0002539) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [embryonic head](http://purl.obolibrary.org/obo/UBERON_0008816) + - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:16313389" #### Added -- [basement membrane of epithelium](http://purl.obolibrary.org/obo/UBERON_0005769) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33208](http://purl.obolibrary.org/obo/NCBITaxon_33208) +- [pharyngeal arch](http://purl.obolibrary.org/obo/UBERON_0002539) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [embryonic craniocervical region](http://purl.obolibrary.org/obo/UBERON_8450003) + - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:16313389" -### beak `http://purl.obolibrary.org/obo/UBERON_0005094` +### pharyngeal arch artery `http://purl.obolibrary.org/obo/UBERON_0004363` #### Removed -- [beak](http://purl.obolibrary.org/obo/UBERON_0005094) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) +- [pharyngeal arch artery](http://purl.obolibrary.org/obo/UBERON_0004363) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) -#### Added -- [beak](http://purl.obolibrary.org/obo/UBERON_0005094) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) -### blastocyst `http://purl.obolibrary.org/obo/UBERON_0000358` +### pharyngeal arch mesenchymal region `http://purl.obolibrary.org/obo/UBERON_0009494` #### Removed -- [blastocyst](http://purl.obolibrary.org/obo/UBERON_0000358) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32525](http://purl.obolibrary.org/obo/NCBITaxon_32525) +- [pharyngeal arch mesenchymal region](http://purl.obolibrary.org/obo/UBERON_0009494) SubClassOf [head mesenchyme](http://purl.obolibrary.org/obo/UBERON_0005253) #### Added -- [blastocyst](http://purl.obolibrary.org/obo/UBERON_0000358) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32525](http://purl.obolibrary.org/obo/NCBITaxon_32525) +- [pharyngeal arch mesenchymal region](http://purl.obolibrary.org/obo/UBERON_0009494) SubClassOf [embryonic tissue](http://purl.obolibrary.org/obo/UBERON_0005291) -### blood nerve barrier `http://purl.obolibrary.org/obo/UBERON_0003209` -#### Removed -- [blood nerve barrier](http://purl.obolibrary.org/obo/UBERON_0003209) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) +### posterolateral artery `http://purl.obolibrary.org/obo/UBERON_8600064` #### Added -- [blood nerve barrier](http://purl.obolibrary.org/obo/UBERON_0003209) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) +- [posterolateral artery](http://purl.obolibrary.org/obo/UBERON_8600064) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [posterolateral artery](http://purl.obolibrary.org/obo/UBERON_8600064) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### blood-cerebrospinal fluid barrier `http://purl.obolibrary.org/obo/UBERON_0003210` -#### Removed -- [blood-cerebrospinal fluid barrier](http://purl.obolibrary.org/obo/UBERON_0003210) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) + +### prostatic venule `http://purl.obolibrary.org/obo/UBERON_8600084` #### Added -- [blood-cerebrospinal fluid barrier](http://purl.obolibrary.org/obo/UBERON_0003210) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) +- [prostatic venule](http://purl.obolibrary.org/obo/UBERON_8600084) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [prostatic venule](http://purl.obolibrary.org/obo/UBERON_8600084) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### blowhole `http://purl.obolibrary.org/obo/UBERON_0013477` -#### Removed -- [blowhole](http://purl.obolibrary.org/obo/UBERON_0013477) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9721](http://purl.obolibrary.org/obo/NCBITaxon_9721) + +### pulmonary arteriole `http://purl.obolibrary.org/obo/UBERON_8600077` #### Added -- [blowhole](http://purl.obolibrary.org/obo/UBERON_0013477) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9721](http://purl.obolibrary.org/obo/NCBITaxon_9721) +- [pulmonary arteriole](http://purl.obolibrary.org/obo/UBERON_8600077) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [pulmonary arteriole](http://purl.obolibrary.org/obo/UBERON_8600077) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### blubber `http://purl.obolibrary.org/obo/UBERON_0009754` -#### Removed -- [blubber](http://purl.obolibrary.org/obo/UBERON_0009754) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) + +### radial vein `http://purl.obolibrary.org/obo/UBERON_8600092` #### Added -- [blubber](http://purl.obolibrary.org/obo/UBERON_0009754) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) +- [radial vein](http://purl.obolibrary.org/obo/UBERON_8600092) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [radial vein](http://purl.obolibrary.org/obo/UBERON_8600092) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### body of tubeworm `http://purl.obolibrary.org/obo/UBERON_0012641` + +### recurrent branch afferent branchial artery `http://purl.obolibrary.org/obo/UBERON_2005014` #### Removed -- [body of tubeworm](http://purl.obolibrary.org/obo/UBERON_0012641) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6425](http://purl.obolibrary.org/obo/NCBITaxon_6425) +- [recurrent branch afferent branchial artery](http://purl.obolibrary.org/obo/UBERON_2005014) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) -#### Added -- [body of tubeworm](http://purl.obolibrary.org/obo/UBERON_0012641) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6425](http://purl.obolibrary.org/obo/NCBITaxon_6425) -### bone element `http://purl.obolibrary.org/obo/UBERON_0001474` -#### Removed -- [bone element](http://purl.obolibrary.org/obo/UBERON_0001474) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) +### septal perforating artery `http://purl.obolibrary.org/obo/UBERON_8600063` #### Added -- [bone element](http://purl.obolibrary.org/obo/UBERON_0001474) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) +- [septal perforating artery](http://purl.obolibrary.org/obo/UBERON_8600063) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [septal perforating artery](http://purl.obolibrary.org/obo/UBERON_8600063) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### bone tissue `http://purl.obolibrary.org/obo/UBERON_0002481` -#### Removed -- [bone tissue](http://purl.obolibrary.org/obo/UBERON_0002481) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) + +### stratum spinosum of esophageal epithelium `http://purl.obolibrary.org/obo/UBERON_8700002` #### Added -- [bone tissue](http://purl.obolibrary.org/obo/UBERON_0002481) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) +- [stratum spinosum of esophageal epithelium](http://purl.obolibrary.org/obo/UBERON_8700002) [label](http://www.w3.org/2000/01/rdf-schema#label) "stratum spinosum of esophageal epithelium" +- [stratum spinosum of esophageal epithelium](http://purl.obolibrary.org/obo/UBERON_8700002) [contributor](http://purl.org/dc/terms/contributor) [0009-0005-7919-4905](https://orcid.org/0009-0005-7919-4905) -### branchiomeric muscle `http://purl.obolibrary.org/obo/UBERON_0004164` -#### Removed -- [branchiomeric muscle](http://purl.obolibrary.org/obo/UBERON_0004164) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) +- [stratum spinosum of esophageal epithelium](http://purl.obolibrary.org/obo/UBERON_8700002) [hasOBONamespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" -#### Added -- [branchiomeric muscle](http://purl.obolibrary.org/obo/UBERON_0004164) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) +- [stratum spinosum of esophageal epithelium](http://purl.obolibrary.org/obo/UBERON_8700002) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "The second deepest layer of the stratified squamous epithelium lining the esophagus, positioned directly above the stratum basale. It consists of multiple layers of keratinocytes connected by strong intercellular junctions called desmosomes, giving the cells a characteristic "spiny" appearance. This layer provides structural support, contributes to the epithelial barrier function, and serves as a transitional zone for keratinocytes migrating towards the luminal surface, playing a crucial role in maintaining the integrity and protective properties of the esophageal lining." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:26019440" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21126700" -### brille `http://purl.obolibrary.org/obo/UBERON_0010515` -#### Removed -- [brille](http://purl.obolibrary.org/obo/UBERON_0010515) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32561](http://purl.obolibrary.org/obo/NCBITaxon_32561) +- [stratum spinosum of esophageal epithelium](http://purl.obolibrary.org/obo/UBERON_8700002) [date](http://purl.org/dc/terms/date) "2024-11-14T15:00:21Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) -#### Added -- [brille](http://purl.obolibrary.org/obo/UBERON_0010515) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32561](http://purl.obolibrary.org/obo/NCBITaxon_32561) +- [stratum spinosum of esophageal epithelium](http://purl.obolibrary.org/obo/UBERON_8700002) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8700002" +- Class: [stratum spinosum of esophageal epithelium](http://purl.obolibrary.org/obo/UBERON_8700002) -### buccal funnel `http://purl.obolibrary.org/obo/UBERON_0008806` -#### Removed -- [buccal funnel](http://purl.obolibrary.org/obo/UBERON_0008806) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_117569](http://purl.obolibrary.org/obo/NCBITaxon_117569) +- [stratum spinosum of esophageal epithelium](http://purl.obolibrary.org/obo/UBERON_8700002) SubClassOf [esophagus squamous epithelium](http://purl.obolibrary.org/obo/UBERON_0006920) -#### Added -- [buccal funnel](http://purl.obolibrary.org/obo/UBERON_0008806) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_117569](http://purl.obolibrary.org/obo/NCBITaxon_117569) +- [stratum spinosum of esophageal epithelium](http://purl.obolibrary.org/obo/UBERON_8700002) SubClassOf [non-keratinized stratified squamous epithelium](http://purl.obolibrary.org/obo/UBERON_0010304) -### bulb of hair follicle `http://purl.obolibrary.org/obo/UBERON_0005932` +### sublingual vein `http://purl.obolibrary.org/obo/UBERON_8600071` #### Added -- [bulb of hair follicle](http://purl.obolibrary.org/obo/UBERON_0005932) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [sublingual vein](http://purl.obolibrary.org/obo/UBERON_8600071) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -- [bulb of hair follicle](http://purl.obolibrary.org/obo/UBERON_0005932) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [sublingual vein](http://purl.obolibrary.org/obo/UBERON_8600071) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### bursa of Fabricius `http://purl.obolibrary.org/obo/UBERON_0003903` -#### Removed -- [bursa of Fabricius](http://purl.obolibrary.org/obo/UBERON_0003903) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8457](http://purl.obolibrary.org/obo/NCBITaxon_8457) +### submental artery `http://purl.obolibrary.org/obo/UBERON_8600096` #### Added -- [bursa of Fabricius](http://purl.obolibrary.org/obo/UBERON_0003903) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8457](http://purl.obolibrary.org/obo/NCBITaxon_8457) +- [submental artery](http://purl.obolibrary.org/obo/UBERON_8600096) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [submental artery](http://purl.obolibrary.org/obo/UBERON_8600096) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### caecum `http://purl.obolibrary.org/obo/UBERON_0001153` -#### Removed -- [caecum](http://purl.obolibrary.org/obo/UBERON_0001153) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) + +### suboccipital venous plexus `http://purl.obolibrary.org/obo/UBERON_8600076` #### Added -- [caecum](http://purl.obolibrary.org/obo/UBERON_0001153) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) +- [suboccipital venous plexus](http://purl.obolibrary.org/obo/UBERON_8600076) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [suboccipital venous plexus](http://purl.obolibrary.org/obo/UBERON_8600076) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### cardia of stomach `http://purl.obolibrary.org/obo/UBERON_0001162` -#### Removed -- [cardia of stomach](http://purl.obolibrary.org/obo/UBERON_0001162) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0073040584" + +### subsegmental pulmonary artery `http://purl.obolibrary.org/obo/UBERON_8600060` #### Added -- [cardia of stomach](http://purl.obolibrary.org/obo/UBERON_0001162) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0073040584" +- [subsegmental pulmonary artery](http://purl.obolibrary.org/obo/UBERON_8600060) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [subsegmental pulmonary artery](http://purl.obolibrary.org/obo/UBERON_8600060) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### cardiac stomach `http://purl.obolibrary.org/obo/UBERON_0008250` -#### Removed -- [cardiac stomach](http://purl.obolibrary.org/obo/UBERON_0008250) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) + +### subsegmental pulmonary vein `http://purl.obolibrary.org/obo/UBERON_8600052` #### Added -- [cardiac stomach](http://purl.obolibrary.org/obo/UBERON_0008250) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) +- [subsegmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600052) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [subsegmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600052) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### cardial lymph propulsor `http://purl.obolibrary.org/obo/UBERON_0036259` -#### Removed -- [cardial lymph propulsor](http://purl.obolibrary.org/obo/UBERON_0036259) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8293](http://purl.obolibrary.org/obo/NCBITaxon_8293) + +### superficial iliac circumflex vein `http://purl.obolibrary.org/obo/UBERON_8600082` #### Added -- [cardial lymph propulsor](http://purl.obolibrary.org/obo/UBERON_0036259) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8293](http://purl.obolibrary.org/obo/NCBITaxon_8293) +- [superficial iliac circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600082) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [superficial iliac circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600082) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### carina of sternum `http://purl.obolibrary.org/obo/UBERON_0011604` -#### Removed -- [carina of sternum](http://purl.obolibrary.org/obo/UBERON_0011604) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" + +### supratrochlear vein `http://purl.obolibrary.org/obo/UBERON_8600088` #### Added -- [carina of sternum](http://purl.obolibrary.org/obo/UBERON_0011604) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" +- [supratrochlear vein](http://purl.obolibrary.org/obo/UBERON_8600088) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [supratrochlear vein](http://purl.obolibrary.org/obo/UBERON_8600088) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### carpometacarpus `http://purl.obolibrary.org/obo/UBERON_0011205` -#### Removed -- [carpometacarpus](http://purl.obolibrary.org/obo/UBERON_0011205) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8492](http://purl.obolibrary.org/obo/NCBITaxon_8492) + +### supreme intercostal vein `http://purl.obolibrary.org/obo/UBERON_8600054` #### Added -- [carpometacarpus](http://purl.obolibrary.org/obo/UBERON_0011205) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8492](http://purl.obolibrary.org/obo/NCBITaxon_8492) +- [supreme intercostal vein](http://purl.obolibrary.org/obo/UBERON_8600054) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [supreme intercostal vein](http://purl.obolibrary.org/obo/UBERON_8600054) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### cartilage tissue `http://purl.obolibrary.org/obo/UBERON_0002418` -#### Removed -- [cartilage tissue](http://purl.obolibrary.org/obo/UBERON_0002418) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) + +### thoracoacromial vein `http://purl.obolibrary.org/obo/UBERON_8600074` #### Added -- [cartilage tissue](http://purl.obolibrary.org/obo/UBERON_0002418) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) +- [thoracoacromial vein](http://purl.obolibrary.org/obo/UBERON_8600074) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [thoracoacromial vein](http://purl.obolibrary.org/obo/UBERON_8600074) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### cartilaginous neurocranium `http://purl.obolibrary.org/obo/UBERON_0004761` -#### Removed -- [cartilaginous neurocranium](http://purl.obolibrary.org/obo/UBERON_0004761) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) + +### thyrocervical trunk `http://purl.obolibrary.org/obo/UBERON_8600062` #### Added -- [cartilaginous neurocranium](http://purl.obolibrary.org/obo/UBERON_0004761) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) +- [thyrocervical trunk](http://purl.obolibrary.org/obo/UBERON_8600062) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [thyrocervical trunk](http://purl.obolibrary.org/obo/UBERON_8600062) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### castor sac `http://purl.obolibrary.org/obo/UBERON_0036019` -#### Removed -- [castor sac](http://purl.obolibrary.org/obo/UBERON_0036019) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_29132](http://purl.obolibrary.org/obo/NCBITaxon_29132) + +### tonsil `http://purl.obolibrary.org/obo/UBERON_0002372` #### Added -- [castor sac](http://purl.obolibrary.org/obo/UBERON_0036019) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_29132](http://purl.obolibrary.org/obo/NCBITaxon_29132) +- [tonsil](http://purl.obolibrary.org/obo/UBERON_0002372) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [tonsil](http://purl.obolibrary.org/obo/UBERON_0002372) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### castoreum `http://purl.obolibrary.org/obo/UBERON_0036015` -#### Removed -- [castoreum](http://purl.obolibrary.org/obo/UBERON_0036015) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_29132](http://purl.obolibrary.org/obo/NCBITaxon_29132) + +### transverse cervical vein `http://purl.obolibrary.org/obo/UBERON_8600075` #### Added -- [castoreum](http://purl.obolibrary.org/obo/UBERON_0036015) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_29132](http://purl.obolibrary.org/obo/NCBITaxon_29132) +- [transverse cervical vein](http://purl.obolibrary.org/obo/UBERON_8600075) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [transverse cervical vein](http://purl.obolibrary.org/obo/UBERON_8600075) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### caterpillar stage `http://purl.obolibrary.org/obo/UBERON_0014864` -#### Removed -- [caterpillar stage](http://purl.obolibrary.org/obo/UBERON_0014864) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7088](http://purl.obolibrary.org/obo/NCBITaxon_7088) + +### transverse nasal root vein `http://purl.obolibrary.org/obo/UBERON_8600089` #### Added -- [caterpillar stage](http://purl.obolibrary.org/obo/UBERON_0014864) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7088](http://purl.obolibrary.org/obo/NCBITaxon_7088) +- [transverse nasal root vein](http://purl.obolibrary.org/obo/UBERON_8600089) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [transverse nasal root vein](http://purl.obolibrary.org/obo/UBERON_8600089) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### caudal pretectal nucleus `http://purl.obolibrary.org/obo/UBERON_0035565` -#### Removed -- [caudal pretectal nucleus](http://purl.obolibrary.org/obo/UBERON_0035565) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32443](http://purl.obolibrary.org/obo/NCBITaxon_32443) + +### ulnar vein `http://purl.obolibrary.org/obo/UBERON_8600093` #### Added -- [caudal pretectal nucleus](http://purl.obolibrary.org/obo/UBERON_0035565) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32443](http://purl.obolibrary.org/obo/NCBITaxon_32443) +- [ulnar vein](http://purl.obolibrary.org/obo/UBERON_8600093) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ulnar vein](http://purl.obolibrary.org/obo/UBERON_8600093) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### caval sphincter `http://purl.obolibrary.org/obo/UBERON_0035832` -#### Removed -- [caval sphincter](http://purl.obolibrary.org/obo/UBERON_0035832) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_379584](http://purl.obolibrary.org/obo/NCBITaxon_379584) - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "may also be in whales" - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "Pinnipedia" +### uterine vein `http://purl.obolibrary.org/obo/UBERON_8600058` #### Added -- [caval sphincter](http://purl.obolibrary.org/obo/UBERON_0035832) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_379584](http://purl.obolibrary.org/obo/NCBITaxon_379584) - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "may also be in whales" +- [uterine vein](http://purl.obolibrary.org/obo/UBERON_8600058) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "Pinnipedia" +- [uterine vein](http://purl.obolibrary.org/obo/UBERON_8600058) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### cecal tonsil `http://purl.obolibrary.org/obo/UBERON_0013478` +### vasa recta `http://purl.obolibrary.org/obo/UBERON_0004726` #### Removed -- [cecal tonsil](http://purl.obolibrary.org/obo/UBERON_0013478) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) +- [vasa recta](http://purl.obolibrary.org/obo/UBERON_0004726) [hasRelatedSynonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "arteria recta" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Vasa_recta" -#### Added -- [cecal tonsil](http://purl.obolibrary.org/obo/UBERON_0013478) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) +- [vasa recta](http://purl.obolibrary.org/obo/UBERON_0004726) [hasRelatedSynonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "arteriae rectae" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Vasa_recta" +- [vasa recta](http://purl.obolibrary.org/obo/UBERON_0004726) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "renal medullary capillary" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "EMAPA:30043" -### central nervous system `http://purl.obolibrary.org/obo/UBERON_0001017` -#### Removed -- [central nervous system](http://purl.obolibrary.org/obo/UBERON_0001017) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) +- [vasa recta](http://purl.obolibrary.org/obo/UBERON_0004726) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "arteriolae rectae renis" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:TA" -#### Added -- [central nervous system](http://purl.obolibrary.org/obo/UBERON_0001017) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) + - [hasSynonymType](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [OMO_0003011](http://purl.obolibrary.org/obo/OMO_0003011) + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:72006" -### central nucleus of pallium `http://purl.obolibrary.org/obo/UBERON_0014742` -#### Removed -- [central nucleus of pallium](http://purl.obolibrary.org/obo/UBERON_0014742) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7778](http://purl.obolibrary.org/obo/NCBITaxon_7778) +- [vasa recta](http://purl.obolibrary.org/obo/UBERON_0004726) [IAO_0000116](http://purl.obolibrary.org/obo/IAO_0000116) "TODO - is this a vein or set of veins? in MA it is a venous blood vessel" -#### Added -- [central nucleus of pallium](http://purl.obolibrary.org/obo/UBERON_0014742) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7778](http://purl.obolibrary.org/obo/NCBITaxon_7778) +- [vasa recta](http://purl.obolibrary.org/obo/UBERON_0004726) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "straight arterioles of kidney" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:72006" +- [vasa recta](http://purl.obolibrary.org/obo/UBERON_0004726) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "In the blood supply of the kidney, the vasa recta renis (or straight arteries of kidney, or straight arterioles of kidney) form a series of straight capillaries in the medulla. They lie parallel to the loop of Henle. These vessels branch off the efferent arterioles of juxtamedullary nephrons (those nephrons closest to the medulla), enter the medulla, and surround the loop of Henle." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Vasa_recta" -### cephalic clasper `http://purl.obolibrary.org/obo/UBERON_0010517` -#### Removed -- [cephalic clasper](http://purl.obolibrary.org/obo/UBERON_0010517) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7864](http://purl.obolibrary.org/obo/NCBITaxon_7864) +- [vasa recta](http://purl.obolibrary.org/obo/UBERON_0004726) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "set of straight arterioles of kidney" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:72006" -#### Added -- [cephalic clasper](http://purl.obolibrary.org/obo/UBERON_0010517) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7864](http://purl.obolibrary.org/obo/NCBITaxon_7864) +- [vasa recta](http://purl.obolibrary.org/obo/UBERON_0004726) SubClassOf [renal vein](http://purl.obolibrary.org/obo/UBERON_0001140) +#### Added +- [vasa recta](http://purl.obolibrary.org/obo/UBERON_0004726) [hasNarrowSynonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "straight arterioles of kidney" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:72006" -### cephalic spine `http://purl.obolibrary.org/obo/UBERON_0017621` -#### Removed -- [cephalic spine](http://purl.obolibrary.org/obo/UBERON_0017621) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7777](http://purl.obolibrary.org/obo/NCBITaxon_7777) +- [vasa recta](http://purl.obolibrary.org/obo/UBERON_0004726) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A group of microvessels that are part of the kidney. A vasa recta has a hairpin-like shape, entering the renal medulla as the straight arterioles and surrounds the loop of Henle, forming a capillary network. Finally it leaves the renal medulla to ascend to the cortex as the straight venules. The primary function of the vasa recta is to facilitate countercurrent exchange, which is essential for the kidney's ability to concentrate urine" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23126245" -#### Added -- [cephalic spine](http://purl.obolibrary.org/obo/UBERON_0017621) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7777](http://purl.obolibrary.org/obo/NCBITaxon_7777) + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Vasa_recta" +- [vasa recta](http://purl.obolibrary.org/obo/UBERON_0004726) [hasNarrowSynonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "arteriolae rectae renis" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:TA" -### cercaria `http://purl.obolibrary.org/obo/UBERON_0018388` -#### Removed -- [cercaria](http://purl.obolibrary.org/obo/UBERON_0018388) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6178](http://purl.obolibrary.org/obo/NCBITaxon_6178) + - [hasSynonymType](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [OMO_0003011](http://purl.obolibrary.org/obo/OMO_0003011) -#### Added -- [cercaria](http://purl.obolibrary.org/obo/UBERON_0018388) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6178](http://purl.obolibrary.org/obo/NCBITaxon_6178) + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:72006" +- [vasa recta](http://purl.obolibrary.org/obo/UBERON_0004726) [hasNarrowSynonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "set of straight arterioles of kidney" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:72006" -### cerebellum `http://purl.obolibrary.org/obo/UBERON_0002037` -#### Removed -- [cerebellum](http://purl.obolibrary.org/obo/UBERON_0002037) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" +- [vasa recta](http://purl.obolibrary.org/obo/UBERON_0004726) [hasNarrowSynonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "renal medullary capillary" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "EMAPA:30043" -#### Added -- [cerebellum](http://purl.obolibrary.org/obo/UBERON_0002037) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" +- [vasa recta](http://purl.obolibrary.org/obo/UBERON_0004726) SubClassOf [kidney vasculature](http://purl.obolibrary.org/obo/UBERON_0006544) -### cerebellum interpositus nucleus `http://purl.obolibrary.org/obo/UBERON_0004073` +### vasa recta ascending limb `http://purl.obolibrary.org/obo/UBERON_0009091` #### Removed -- [cerebellum interpositus nucleus](http://purl.obolibrary.org/obo/UBERON_0004073) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" +- [vasa recta ascending limb](http://purl.obolibrary.org/obo/UBERON_0009091) [label](http://www.w3.org/2000/01/rdf-schema#label) "vasa recta ascending limb" + +- [vasa recta ascending limb](http://purl.obolibrary.org/obo/UBERON_0009091) SubClassOf [mesoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004120) #### Added -- [cerebellum interpositus nucleus](http://purl.obolibrary.org/obo/UBERON_0004073) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" +- [vasa recta ascending limb](http://purl.obolibrary.org/obo/UBERON_0009091) [label](http://www.w3.org/2000/01/rdf-schema#label) "ascending vasa recta" -### cervical region `http://purl.obolibrary.org/obo/UBERON_0005434` +### vasa recta descending limb `http://purl.obolibrary.org/obo/UBERON_0009202` #### Removed -- [cervical region](http://purl.obolibrary.org/obo/UBERON_0005434) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) +- [vasa recta descending limb](http://purl.obolibrary.org/obo/UBERON_0009202) [label](http://www.w3.org/2000/01/rdf-schema#label) "vasa recta descending limb" + +- [vasa recta descending limb](http://purl.obolibrary.org/obo/UBERON_0009202) SubClassOf [mesoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004120) #### Added -- [cervical region](http://purl.obolibrary.org/obo/UBERON_0005434) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) +- [vasa recta descending limb](http://purl.obolibrary.org/obo/UBERON_0009202) [label](http://www.w3.org/2000/01/rdf-schema#label) "descending vasa recta" -### cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0002726` +### venous system `http://purl.obolibrary.org/obo/UBERON_0004582` #### Removed -- [cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0002726) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) +- [venous system](http://purl.obolibrary.org/obo/UBERON_0004582) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -#### Added -- [cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0002726) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) +- [venous system](http://purl.obolibrary.org/obo/UBERON_0004582) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### cetacean involucrum `http://purl.obolibrary.org/obo/UBERON_0008958` -#### Removed -- [cetacean involucrum](http://purl.obolibrary.org/obo/UBERON_0008958) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9721](http://purl.obolibrary.org/obo/NCBITaxon_9721) - -#### Added -- [cetacean involucrum](http://purl.obolibrary.org/obo/UBERON_0008958) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9721](http://purl.obolibrary.org/obo/NCBITaxon_9721) - - -### cheek pouch `http://purl.obolibrary.org/obo/UBERON_0008802` -#### Removed -- [cheek pouch](http://purl.obolibrary.org/obo/UBERON_0008802) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [cheek pouch](http://purl.obolibrary.org/obo/UBERON_0008802) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### chitin-based cuticle `http://purl.obolibrary.org/obo/UBERON_0001001` -#### Removed -- [chitin-based cuticle](http://purl.obolibrary.org/obo/UBERON_0001001) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - -#### Added -- [chitin-based cuticle](http://purl.obolibrary.org/obo/UBERON_0001001) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - -### chordamesoderm `http://purl.obolibrary.org/obo/UBERON_0004880` -#### Removed -- [chordamesoderm](http://purl.obolibrary.org/obo/UBERON_0004880) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [chordamesoderm](http://purl.obolibrary.org/obo/UBERON_0004880) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### chordate pharynx `http://purl.obolibrary.org/obo/UBERON_0001042` -#### Removed -- [chordate pharynx](http://purl.obolibrary.org/obo/UBERON_0001042) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [chordate pharynx](http://purl.obolibrary.org/obo/UBERON_0001042) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### chordo neural hinge `http://purl.obolibrary.org/obo/UBERON_0007097` -#### Removed -- [chordo neural hinge](http://purl.obolibrary.org/obo/UBERON_0007097) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [chordo neural hinge](http://purl.obolibrary.org/obo/UBERON_0007097) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### chordotonal organ `http://purl.obolibrary.org/obo/UBERON_0001038` -#### Removed -- [chordotonal organ](http://purl.obolibrary.org/obo/UBERON_0001038) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - -#### Added -- [chordotonal organ](http://purl.obolibrary.org/obo/UBERON_0001038) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - -### chorioallantoic membrane `http://purl.obolibrary.org/obo/UBERON_0005335` -#### Removed -- [chorioallantoic membrane](http://purl.obolibrary.org/obo/UBERON_0005335) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - -#### Added -- [chorioallantoic membrane](http://purl.obolibrary.org/obo/UBERON_0005335) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - -### chorion membrane `http://purl.obolibrary.org/obo/UBERON_0003124` -#### Removed -- [chorion membrane](http://purl.obolibrary.org/obo/UBERON_0003124) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Hymans" - -#### Added -- [chorion membrane](http://purl.obolibrary.org/obo/UBERON_0003124) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Hymans" - - -### choroidal guanine tapetum `http://purl.obolibrary.org/obo/UBERON_0010246` -#### Removed -- [choroidal guanine tapetum](http://purl.obolibrary.org/obo/UBERON_0010246) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7777](http://purl.obolibrary.org/obo/NCBITaxon_7777) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "doi:10.1017/S0025315400024760" - -#### Added -- [choroidal guanine tapetum](http://purl.obolibrary.org/obo/UBERON_0010246) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7777](http://purl.obolibrary.org/obo/NCBITaxon_7777) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "doi:10.1017/S0025315400024760" - - -### choroidal tapetum cellulosum `http://purl.obolibrary.org/obo/UBERON_0010247` -#### Removed -- [choroidal tapetum cellulosum](http://purl.obolibrary.org/obo/UBERON_0010247) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - -#### Added -- [choroidal tapetum cellulosum](http://purl.obolibrary.org/obo/UBERON_0010247) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - - -### choroidal tapetum fibrosum `http://purl.obolibrary.org/obo/UBERON_0010248` -#### Removed -- [choroidal tapetum fibrosum](http://purl.obolibrary.org/obo/UBERON_0010248) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - -#### Added -- [choroidal tapetum fibrosum](http://purl.obolibrary.org/obo/UBERON_0010248) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - - -### chyme `http://purl.obolibrary.org/obo/UBERON_0000910` -#### Removed -- [chyme](http://purl.obolibrary.org/obo/UBERON_0000910) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [chyme](http://purl.obolibrary.org/obo/UBERON_0000910) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### ciliated pit `http://purl.obolibrary.org/obo/UBERON_0009957` -#### Removed -- [ciliated pit](http://purl.obolibrary.org/obo/UBERON_0009957) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7737](http://purl.obolibrary.org/obo/NCBITaxon_7737) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [ciliated pit](http://purl.obolibrary.org/obo/UBERON_0009957) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7737](http://purl.obolibrary.org/obo/NCBITaxon_7737) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### circulatory system `http://purl.obolibrary.org/obo/UBERON_0001009` -#### Removed -- [circulatory system](http://purl.obolibrary.org/obo/UBERON_0001009) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [circulatory system](http://purl.obolibrary.org/obo/UBERON_0001009) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### circulatory system dorsal vessel `http://purl.obolibrary.org/obo/UBERON_0015231` -#### Removed -- [circulatory system dorsal vessel](http://purl.obolibrary.org/obo/UBERON_0015231) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - -#### Added -- [circulatory system dorsal vessel](http://purl.obolibrary.org/obo/UBERON_0015231) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - -### clasper `http://purl.obolibrary.org/obo/UBERON_0010516` -#### Removed -- [clasper](http://purl.obolibrary.org/obo/UBERON_0010516) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7777](http://purl.obolibrary.org/obo/NCBITaxon_7777) - -#### Added -- [clasper](http://purl.obolibrary.org/obo/UBERON_0010516) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7777](http://purl.obolibrary.org/obo/NCBITaxon_7777) - - -### clitoris `http://purl.obolibrary.org/obo/UBERON_0002411` -#### Removed -- [clitoris](http://purl.obolibrary.org/obo/UBERON_0002411) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [clitoris](http://purl.obolibrary.org/obo/UBERON_0002411) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### cloaca `http://purl.obolibrary.org/obo/UBERON_0000162` -#### Removed -- [cloaca](http://purl.obolibrary.org/obo/UBERON_0000162) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [cloaca](http://purl.obolibrary.org/obo/UBERON_0000162) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### cnidarian venom `http://purl.obolibrary.org/obo/UBERON_0008280` -#### Removed -- [cnidarian venom](http://purl.obolibrary.org/obo/UBERON_0008280) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6073](http://purl.obolibrary.org/obo/NCBITaxon_6073) - -#### Added -- [cnidarian venom](http://purl.obolibrary.org/obo/UBERON_0008280) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6073](http://purl.obolibrary.org/obo/NCBITaxon_6073) - - -### cocoon `http://purl.obolibrary.org/obo/UBERON_0013198` -#### Removed -- [cocoon](http://purl.obolibrary.org/obo/UBERON_0013198) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33392](http://purl.obolibrary.org/obo/NCBITaxon_33392) - -#### Added -- [cocoon](http://purl.obolibrary.org/obo/UBERON_0013198) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33392](http://purl.obolibrary.org/obo/NCBITaxon_33392) - - -### coelom `http://purl.obolibrary.org/obo/UBERON_0011997` -#### Removed -- [coelom](http://purl.obolibrary.org/obo/UBERON_0011997) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [coelom](http://purl.obolibrary.org/obo/UBERON_0011997) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### collagen and cuticulin-based cuticle `http://purl.obolibrary.org/obo/UBERON_0003049` -#### Removed -- [collagen and cuticulin-based cuticle](http://purl.obolibrary.org/obo/UBERON_0003049) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6231](http://purl.obolibrary.org/obo/NCBITaxon_6231) - -#### Added -- [collagen and cuticulin-based cuticle](http://purl.obolibrary.org/obo/UBERON_0003049) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6231](http://purl.obolibrary.org/obo/NCBITaxon_6231) - - -### collar nerve cord `http://purl.obolibrary.org/obo/UBERON_0035602` -#### Removed -- [collar nerve cord](http://purl.obolibrary.org/obo/UBERON_0035602) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_10220](http://purl.obolibrary.org/obo/NCBITaxon_10220) - -#### Added -- [collar nerve cord](http://purl.obolibrary.org/obo/UBERON_0035602) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_10220](http://purl.obolibrary.org/obo/NCBITaxon_10220) - - -### colon `http://purl.obolibrary.org/obo/UBERON_0001155` -#### Removed -- [colon](http://purl.obolibrary.org/obo/UBERON_0001155) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [colon](http://purl.obolibrary.org/obo/UBERON_0001155) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### columnella `http://purl.obolibrary.org/obo/UBERON_0008283` -#### Removed -- [columnella](http://purl.obolibrary.org/obo/UBERON_0008283) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - -#### Added -- [columnella](http://purl.obolibrary.org/obo/UBERON_0008283) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - - -### columnella muscle `http://purl.obolibrary.org/obo/UBERON_0008284` -#### Removed -- [columnella muscle](http://purl.obolibrary.org/obo/UBERON_0008284) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - -#### Added -- [columnella muscle](http://purl.obolibrary.org/obo/UBERON_0008284) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - - -### comb `http://purl.obolibrary.org/obo/UBERON_0012176` -#### Removed -- [comb](http://purl.obolibrary.org/obo/UBERON_0012176) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [comb](http://purl.obolibrary.org/obo/UBERON_0012176) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### comb and wattle `http://purl.obolibrary.org/obo/UBERON_0007623` -#### Removed -- [comb and wattle](http://purl.obolibrary.org/obo/UBERON_0007623) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [comb and wattle](http://purl.obolibrary.org/obo/UBERON_0007623) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### common tendinous ring `http://purl.obolibrary.org/obo/UBERON_0014796` -#### Removed -- [common tendinous ring](http://purl.obolibrary.org/obo/UBERON_0014796) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [common tendinous ring](http://purl.obolibrary.org/obo/UBERON_0014796) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### compound eye `http://purl.obolibrary.org/obo/UBERON_0000018` -#### Removed -- [compound eye](http://purl.obolibrary.org/obo/UBERON_0000018) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:21062451" - -#### Added -- [compound eye](http://purl.obolibrary.org/obo/UBERON_0000018) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:21062451" - - -### connective tissue `http://purl.obolibrary.org/obo/UBERON_0002384` -#### Removed -- [connective tissue](http://purl.obolibrary.org/obo/UBERON_0002384) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [connective tissue](http://purl.obolibrary.org/obo/UBERON_0002384) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### copepodite stage `http://purl.obolibrary.org/obo/UBERON_0014860` -#### Removed -- [copepodite stage](http://purl.obolibrary.org/obo/UBERON_0014860) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6830](http://purl.obolibrary.org/obo/NCBITaxon_6830) - -#### Added -- [copepodite stage](http://purl.obolibrary.org/obo/UBERON_0014860) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6830](http://purl.obolibrary.org/obo/NCBITaxon_6830) - - -### copepodite stage 1 `http://purl.obolibrary.org/obo/UBERON_8200002` -#### Removed -- [copepodite stage 1](http://purl.obolibrary.org/obo/UBERON_8200002) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6830](http://purl.obolibrary.org/obo/NCBITaxon_6830) - -#### Added -- [copepodite stage 1](http://purl.obolibrary.org/obo/UBERON_8200002) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6830](http://purl.obolibrary.org/obo/NCBITaxon_6830) - - -### copepodite stage 2 `http://purl.obolibrary.org/obo/UBERON_8200003` -#### Removed -- [copepodite stage 2](http://purl.obolibrary.org/obo/UBERON_8200003) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6830](http://purl.obolibrary.org/obo/NCBITaxon_6830) - -#### Added -- [copepodite stage 2](http://purl.obolibrary.org/obo/UBERON_8200003) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6830](http://purl.obolibrary.org/obo/NCBITaxon_6830) - - -### copepodite stage 3 `http://purl.obolibrary.org/obo/UBERON_8200004` -#### Removed -- [copepodite stage 3](http://purl.obolibrary.org/obo/UBERON_8200004) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6830](http://purl.obolibrary.org/obo/NCBITaxon_6830) - -#### Added -- [copepodite stage 3](http://purl.obolibrary.org/obo/UBERON_8200004) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6830](http://purl.obolibrary.org/obo/NCBITaxon_6830) - - -### copepodite stage 4 `http://purl.obolibrary.org/obo/UBERON_8200005` -#### Removed -- [copepodite stage 4](http://purl.obolibrary.org/obo/UBERON_8200005) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6830](http://purl.obolibrary.org/obo/NCBITaxon_6830) - -#### Added -- [copepodite stage 4](http://purl.obolibrary.org/obo/UBERON_8200005) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6830](http://purl.obolibrary.org/obo/NCBITaxon_6830) - - -### copepodite stage 5 `http://purl.obolibrary.org/obo/UBERON_8200006` -#### Removed -- [copepodite stage 5](http://purl.obolibrary.org/obo/UBERON_8200006) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6830](http://purl.obolibrary.org/obo/NCBITaxon_6830) - -#### Added -- [copepodite stage 5](http://purl.obolibrary.org/obo/UBERON_8200006) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6830](http://purl.obolibrary.org/obo/NCBITaxon_6830) - - -### copepodite stage 6 `http://purl.obolibrary.org/obo/UBERON_8200007` -#### Removed -- [copepodite stage 6](http://purl.obolibrary.org/obo/UBERON_8200007) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6830](http://purl.obolibrary.org/obo/NCBITaxon_6830) - -#### Added -- [copepodite stage 6](http://purl.obolibrary.org/obo/UBERON_8200007) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6830](http://purl.obolibrary.org/obo/NCBITaxon_6830) - - -### copula pyramidis `http://purl.obolibrary.org/obo/UBERON_0005347` -#### Removed -- [copula pyramidis](http://purl.obolibrary.org/obo/UBERON_0005347) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9989](http://purl.obolibrary.org/obo/NCBITaxon_9989) - -#### Added -- [copula pyramidis](http://purl.obolibrary.org/obo/UBERON_0005347) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9989](http://purl.obolibrary.org/obo/NCBITaxon_9989) - - -### coracoid process of scapula `http://purl.obolibrary.org/obo/UBERON_0006633` -#### Removed -- [coracoid process of scapula](http://purl.obolibrary.org/obo/UBERON_0006633) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [coracoid process of scapula](http://purl.obolibrary.org/obo/UBERON_0006633) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### coronal organ `http://purl.obolibrary.org/obo/UBERON_0009717` -#### Removed -- [coronal organ](http://purl.obolibrary.org/obo/UBERON_0009717) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) - -#### Added -- [coronal organ](http://purl.obolibrary.org/obo/UBERON_0009717) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) - - -### corpus callosum `http://purl.obolibrary.org/obo/UBERON_0002336` -#### Removed -- [corpus callosum](http://purl.obolibrary.org/obo/UBERON_0002336) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "White matter structure containing massive numbers of commissural fibers connecting cortical areas in the two cerebral hemispheres.it is subdivided into a genu, a rostrum, a body, and a splenium. (MM)." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "BIRNLEX:1087" - -- [corpus callosum](http://purl.obolibrary.org/obo/UBERON_0002336) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [corpus callosum](http://purl.obolibrary.org/obo/UBERON_0002336) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "White matter structure containing massive numbers of commissural fibers connecting cortical areas in the two cerebral hemispheres. It is subdivided into a genu, a rostrum, a body, and a splenium. (MM)." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "BIRNLEX:1087" - -- [corpus callosum](http://purl.obolibrary.org/obo/UBERON_0002336) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### corpus cardiacum `http://purl.obolibrary.org/obo/UBERON_0001056` -#### Removed -- [corpus cardiacum](http://purl.obolibrary.org/obo/UBERON_0001056) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [corpus cardiacum](http://purl.obolibrary.org/obo/UBERON_0001056) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### corpus cavernosum `http://purl.obolibrary.org/obo/UBERON_0006609` -#### Removed -- [corpus cavernosum](http://purl.obolibrary.org/obo/UBERON_0006609) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [corpus cavernosum](http://purl.obolibrary.org/obo/UBERON_0006609) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### corpus cavernosum maxillaris `http://purl.obolibrary.org/obo/UBERON_0013658` -#### Removed -- [corpus cavernosum maxillaris](http://purl.obolibrary.org/obo/UBERON_0013658) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9761](http://purl.obolibrary.org/obo/NCBITaxon_9761) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:23450839" - -#### Added -- [corpus cavernosum maxillaris](http://purl.obolibrary.org/obo/UBERON_0013658) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9761](http://purl.obolibrary.org/obo/NCBITaxon_9761) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:23450839" - - -### corpus luteum `http://purl.obolibrary.org/obo/UBERON_0002512` -#### Removed -- [corpus luteum](http://purl.obolibrary.org/obo/UBERON_0002512) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [corpus luteum](http://purl.obolibrary.org/obo/UBERON_0002512) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### corpuscle of de Quatrefage `http://purl.obolibrary.org/obo/UBERON_0009956` -#### Removed -- [corpuscle of de Quatrefage](http://purl.obolibrary.org/obo/UBERON_0009956) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7737](http://purl.obolibrary.org/obo/NCBITaxon_7737) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:11523831" - -#### Added -- [corpuscle of de Quatrefage](http://purl.obolibrary.org/obo/UBERON_0009956) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7737](http://purl.obolibrary.org/obo/NCBITaxon_7737) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:11523831" - - -### corpuscles of Stannius `http://purl.obolibrary.org/obo/UBERON_2001200` -#### Removed -- [corpuscles of Stannius](http://purl.obolibrary.org/obo/UBERON_2001200) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7898](http://purl.obolibrary.org/obo/NCBITaxon_7898) - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://jeb.biologists.org/content/177/1/243.short" - -#### Added -- [corpuscles of Stannius](http://purl.obolibrary.org/obo/UBERON_2001200) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7898](http://purl.obolibrary.org/obo/NCBITaxon_7898) - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://jeb.biologists.org/content/177/1/243.short" - - -### cortex of hair `http://purl.obolibrary.org/obo/UBERON_0002077` - -#### Added -- [cortex of hair](http://purl.obolibrary.org/obo/UBERON_0002077) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [cortex of hair](http://purl.obolibrary.org/obo/UBERON_0002077) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - - -### cortical intermediate zone `http://purl.obolibrary.org/obo/UBERON_0004040` -#### Removed -- [cortical intermediate zone](http://purl.obolibrary.org/obo/UBERON_0004040) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [cortical intermediate zone](http://purl.obolibrary.org/obo/UBERON_0004040) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### coxal gland `http://purl.obolibrary.org/obo/UBERON_0009965` -#### Removed -- [coxal gland](http://purl.obolibrary.org/obo/UBERON_0009965) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6843](http://purl.obolibrary.org/obo/NCBITaxon_6843) - -#### Added -- [coxal gland](http://purl.obolibrary.org/obo/UBERON_0009965) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6843](http://purl.obolibrary.org/obo/NCBITaxon_6843) - - -### cranial neuron projection bundle `http://purl.obolibrary.org/obo/UBERON_0034713` -#### Removed -- [cranial neuron projection bundle](http://purl.obolibrary.org/obo/UBERON_0034713) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_89593](http://purl.obolibrary.org/obo/NCBITaxon_89593) - -#### Added -- [cranial neuron projection bundle](http://purl.obolibrary.org/obo/UBERON_0034713) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_89593](http://purl.obolibrary.org/obo/NCBITaxon_89593) - - -### cranial placode `http://purl.obolibrary.org/obo/UBERON_0002546` -#### Removed -- [cranial placode](http://purl.obolibrary.org/obo/UBERON_0002546) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:11523831" - - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:22512454" - -#### Added -- [cranial placode](http://purl.obolibrary.org/obo/UBERON_0002546) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:11523831" - - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:22512454" - - -### cranial skeletal system `http://purl.obolibrary.org/obo/UBERON_0010323` -#### Removed -- [cranial skeletal system](http://purl.obolibrary.org/obo/UBERON_0010323) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_89593](http://purl.obolibrary.org/obo/NCBITaxon_89593) - -#### Added -- [cranial skeletal system](http://purl.obolibrary.org/obo/UBERON_0010323) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_89593](http://purl.obolibrary.org/obo/NCBITaxon_89593) - - -### crop `http://purl.obolibrary.org/obo/UBERON_0007356` -#### Removed -- [crop](http://purl.obolibrary.org/obo/UBERON_0007356) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [crop](http://purl.obolibrary.org/obo/UBERON_0007356) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### crustacean larval stage `http://purl.obolibrary.org/obo/UBERON_0018378` -#### Removed -- [crustacean larval stage](http://purl.obolibrary.org/obo/UBERON_0018378) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6657](http://purl.obolibrary.org/obo/NCBITaxon_6657) - -#### Added -- [crustacean larval stage](http://purl.obolibrary.org/obo/UBERON_0018378) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6657](http://purl.obolibrary.org/obo/NCBITaxon_6657) - - -### crustacean maxillary gland `http://purl.obolibrary.org/obo/UBERON_0009964` -#### Removed -- [crustacean maxillary gland](http://purl.obolibrary.org/obo/UBERON_0009964) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6657](http://purl.obolibrary.org/obo/NCBITaxon_6657) - -#### Added -- [crustacean maxillary gland](http://purl.obolibrary.org/obo/UBERON_0009964) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6657](http://purl.obolibrary.org/obo/NCBITaxon_6657) - - -### crypt of Lieberkuhn `http://purl.obolibrary.org/obo/UBERON_0001983` -#### Removed -- [crypt of Lieberkuhn](http://purl.obolibrary.org/obo/UBERON_0001983) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:9780521617147" - - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "further investigation required" - -#### Added -- [crypt of Lieberkuhn](http://purl.obolibrary.org/obo/UBERON_0001983) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:9780521617147" - - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "further investigation required" - - -### cud `http://purl.obolibrary.org/obo/UBERON_0012114` -#### Removed -- [cud](http://purl.obolibrary.org/obo/UBERON_0012114) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9845](http://purl.obolibrary.org/obo/NCBITaxon_9845) - -#### Added -- [cud](http://purl.obolibrary.org/obo/UBERON_0012114) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9845](http://purl.obolibrary.org/obo/NCBITaxon_9845) - - -### cupular organ `http://purl.obolibrary.org/obo/UBERON_0009716` -#### Removed -- [cupular organ](http://purl.obolibrary.org/obo/UBERON_0009716) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) - -#### Added -- [cupular organ](http://purl.obolibrary.org/obo/UBERON_0009716) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) - - -### cuspid `http://purl.obolibrary.org/obo/UBERON_0003674` -#### Removed -- [cuspid](http://purl.obolibrary.org/obo/UBERON_0003674) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [cuspid](http://purl.obolibrary.org/obo/UBERON_0003674) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### cuticle `http://purl.obolibrary.org/obo/UBERON_0001002` -#### Removed -- [cuticle](http://purl.obolibrary.org/obo/UBERON_0001002) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Rieger - Evolution of the Cuticle in the Lower Eumetazoa" - -#### Added -- [cuticle](http://purl.obolibrary.org/obo/UBERON_0001002) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Rieger - Evolution of the Cuticle in the Lower Eumetazoa" - - -### cuticle of hair `http://purl.obolibrary.org/obo/UBERON_0002076` - -#### Added -- [cuticle of hair](http://purl.obolibrary.org/obo/UBERON_0002076) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [cuticle of hair](http://purl.obolibrary.org/obo/UBERON_0002076) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - - -### cysticercus stage `http://purl.obolibrary.org/obo/UBERON_0014856` -#### Removed -- [cysticercus stage](http://purl.obolibrary.org/obo/UBERON_0014856) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6157](http://purl.obolibrary.org/obo/NCBITaxon_6157) - -#### Added -- [cysticercus stage](http://purl.obolibrary.org/obo/UBERON_0014856) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6157](http://purl.obolibrary.org/obo/NCBITaxon_6157) - - -### dentine `http://purl.obolibrary.org/obo/UBERON_0001751` -#### Removed -- [dentine](http://purl.obolibrary.org/obo/UBERON_0001751) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [dentine](http://purl.obolibrary.org/obo/UBERON_0001751) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### dermal annular fold `http://purl.obolibrary.org/obo/UBERON_3010058` -#### Removed -- [dermal annular fold](http://purl.obolibrary.org/obo/UBERON_3010058) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_43453](http://purl.obolibrary.org/obo/NCBITaxon_43453) - -#### Added -- [dermal annular fold](http://purl.obolibrary.org/obo/UBERON_3010058) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_43453](http://purl.obolibrary.org/obo/NCBITaxon_43453) - - -### dermal papilla `http://purl.obolibrary.org/obo/UBERON_0000412` - -#### Added -- [dermal papilla](http://purl.obolibrary.org/obo/UBERON_0000412) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [dermal papilla](http://purl.obolibrary.org/obo/UBERON_0000412) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - - -### dermal skeleton `http://purl.obolibrary.org/obo/UBERON_0010364` -#### Removed -- [dermal skeleton](http://purl.obolibrary.org/obo/UBERON_0010364) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [dermal skeleton](http://purl.obolibrary.org/obo/UBERON_0010364) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### dermatocranium `http://purl.obolibrary.org/obo/UBERON_0003113` -#### Removed -- [dermatocranium](http://purl.obolibrary.org/obo/UBERON_0003113) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [dermatocranium](http://purl.obolibrary.org/obo/UBERON_0003113) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### diaphragm `http://purl.obolibrary.org/obo/UBERON_0001103` -#### Removed -- [diaphragm](http://purl.obolibrary.org/obo/UBERON_0001103) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:23586979" - -#### Added -- [diaphragm](http://purl.obolibrary.org/obo/UBERON_0001103) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:23586979" - - -### diaphragmaticus muscle `http://purl.obolibrary.org/obo/UBERON_0036071` -#### Removed -- [diaphragmaticus muscle](http://purl.obolibrary.org/obo/UBERON_0036071) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_1294634](http://purl.obolibrary.org/obo/NCBITaxon_1294634) - -#### Added -- [diaphragmaticus muscle](http://purl.obolibrary.org/obo/UBERON_0036071) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_1294634](http://purl.obolibrary.org/obo/NCBITaxon_1294634) - - -### digestive tract `http://purl.obolibrary.org/obo/UBERON_0001555` -#### Removed -- [digestive tract](http://purl.obolibrary.org/obo/UBERON_0001555) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [digestive tract](http://purl.obolibrary.org/obo/UBERON_0001555) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### digit `http://purl.obolibrary.org/obo/UBERON_0002544` -#### Removed -- [digit](http://purl.obolibrary.org/obo/UBERON_0002544) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - -#### Added -- [digit](http://purl.obolibrary.org/obo/UBERON_0002544) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - -### distal ureter `http://purl.obolibrary.org/obo/UBERON_8600109` - -#### Added -- [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) [label](http://www.w3.org/2000/01/rdf-schema#label) "distal ureter" - -- [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600109" - -- [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) [hasOBONamespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" - -- [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) [contributor](http://purl.org/dc/terms/contributor) [X](https://orcid.org/0000-0003-2804-127X) - -- [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-7655-4833](https://orcid.org/0000-0001-7655-4833) - -- [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) [date](http://purl.org/dc/terms/date) "2024-08-28T14:15:03Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - -- [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) - -- [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-4341-3265](https://orcid.org/0000-0002-4341-3265) - -- [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "lower ureter" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:15883" - -- [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "pelvic ureter" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A segment of the ureter that extends from the common iliac artery bifurcation to the bladder. From there, the ureter curves back and follows the lateral pelvic wall inferiorly to connect with the posterolateral bladder wall." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- Class: [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) - -- [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) SubClassOf [mesoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004120) - -- [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) SubClassOf [RO_0002150](http://purl.obolibrary.org/obo/RO_0002150) some [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) - -- [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [ureter](http://purl.obolibrary.org/obo/UBERON_0000056) - -- [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) SubClassOf [RO_0002150](http://purl.obolibrary.org/obo/RO_0002150) some [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) - -- [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) SubClassOf [excretory tube](http://purl.obolibrary.org/obo/UBERON_0006555) - - -### dorsal bursa `http://purl.obolibrary.org/obo/UBERON_0013177` -#### Removed -- [dorsal bursa](http://purl.obolibrary.org/obo/UBERON_0013177) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9721](http://purl.obolibrary.org/obo/NCBITaxon_9721) - -#### Added -- [dorsal bursa](http://purl.obolibrary.org/obo/UBERON_0013177) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9721](http://purl.obolibrary.org/obo/NCBITaxon_9721) - - -### dorsal cloacal gland `http://purl.obolibrary.org/obo/UBERON_0017164` -#### Removed -- [dorsal cloacal gland](http://purl.obolibrary.org/obo/UBERON_0017164) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8293](http://purl.obolibrary.org/obo/NCBITaxon_8293) - -#### Added -- [dorsal cloacal gland](http://purl.obolibrary.org/obo/UBERON_0017164) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8293](http://purl.obolibrary.org/obo/NCBITaxon_8293) - - -### dorsal column-medial lemniscus pathway `http://purl.obolibrary.org/obo/UBERON_0018237` -#### Removed -- [dorsal column-medial lemniscus pathway](http://purl.obolibrary.org/obo/UBERON_0018237) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:978-1-4615-0037-7" - -#### Added -- [dorsal column-medial lemniscus pathway](http://purl.obolibrary.org/obo/UBERON_0018237) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:978-1-4615-0037-7" - - -### dorsal ventricular ridge of pallium `http://purl.obolibrary.org/obo/UBERON_0014733` -#### Removed -- [dorsal ventricular ridge of pallium](http://purl.obolibrary.org/obo/UBERON_0014733) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - -#### Added -- [dorsal ventricular ridge of pallium](http://purl.obolibrary.org/obo/UBERON_0014733) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - -### dorsobronchus `http://purl.obolibrary.org/obo/UBERON_0009073` -#### Removed -- [dorsobronchus](http://purl.obolibrary.org/obo/UBERON_0009073) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [dorsobronchus](http://purl.obolibrary.org/obo/UBERON_0009073) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### dorsum `http://purl.obolibrary.org/obo/UBERON_0001137` -#### Removed -- [dorsum](http://purl.obolibrary.org/obo/UBERON_0001137) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [dorsum](http://purl.obolibrary.org/obo/UBERON_0001137) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### dulla `http://purl.obolibrary.org/obo/UBERON_0013656` -#### Removed -- [dulla](http://purl.obolibrary.org/obo/UBERON_0013656) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9836](http://purl.obolibrary.org/obo/NCBITaxon_9836) - -#### Added -- [dulla](http://purl.obolibrary.org/obo/UBERON_0013656) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9836](http://purl.obolibrary.org/obo/NCBITaxon_9836) - - -### duodenal gland `http://purl.obolibrary.org/obo/UBERON_0001212` -#### Removed -- [duodenal gland](http://purl.obolibrary.org/obo/UBERON_0001212) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:9780521617147" - - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "unclear for Aves" - -#### Added -- [duodenal gland](http://purl.obolibrary.org/obo/UBERON_0001212) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:9780521617147" - - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "unclear for Aves" - - -### echinoderm gastric caecum `http://purl.obolibrary.org/obo/UBERON_0009855` -#### Removed -- [echinoderm gastric caecum](http://purl.obolibrary.org/obo/UBERON_0009855) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - -#### Added -- [echinoderm gastric caecum](http://purl.obolibrary.org/obo/UBERON_0009855) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - - -### echinoderm pyloric cecum `http://purl.obolibrary.org/obo/UBERON_0008248` -#### Removed -- [echinoderm pyloric cecum](http://purl.obolibrary.org/obo/UBERON_0008248) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - -#### Added -- [echinoderm pyloric cecum](http://purl.obolibrary.org/obo/UBERON_0008248) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - - -### echinopluteus larval stage `http://purl.obolibrary.org/obo/UBERON_0008264` -#### Removed -- [echinopluteus larval stage](http://purl.obolibrary.org/obo/UBERON_0008264) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - -#### Added -- [echinopluteus larval stage](http://purl.obolibrary.org/obo/UBERON_0008264) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - - -### efferent duct `http://purl.obolibrary.org/obo/UBERON_0006946` -#### Removed -- [efferent duct](http://purl.obolibrary.org/obo/UBERON_0006946) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [efferent duct](http://purl.obolibrary.org/obo/UBERON_0006946) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### egg chamber `http://purl.obolibrary.org/obo/UBERON_0003199` -#### Removed -- [egg chamber](http://purl.obolibrary.org/obo/UBERON_0003199) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "https://github.com/obophenotype/uberon/issues/476" - -#### Added -- [egg chamber](http://purl.obolibrary.org/obo/UBERON_0003199) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "https://github.com/obophenotype/uberon/issues/476" - - -### egg chorion `http://purl.obolibrary.org/obo/UBERON_0000920` -#### Removed -- [egg chorion](http://purl.obolibrary.org/obo/UBERON_0000920) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [egg chorion](http://purl.obolibrary.org/obo/UBERON_0000920) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### ejaculatory duct `http://purl.obolibrary.org/obo/UBERON_0000999` -#### Removed -- [ejaculatory duct](http://purl.obolibrary.org/obo/UBERON_0000999) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [ejaculatory duct](http://purl.obolibrary.org/obo/UBERON_0000999) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### electric organ `http://purl.obolibrary.org/obo/UBERON_0006869` -#### Removed -- [electric organ](http://purl.obolibrary.org/obo/UBERON_0006869) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7898](http://purl.obolibrary.org/obo/NCBITaxon_7898) - -#### Added -- [electric organ](http://purl.obolibrary.org/obo/UBERON_0006869) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7898](http://purl.obolibrary.org/obo/NCBITaxon_7898) - - -### elephant trunk `http://purl.obolibrary.org/obo/UBERON_0014479` -#### Removed -- [elephant trunk](http://purl.obolibrary.org/obo/UBERON_0014479) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9779](http://purl.obolibrary.org/obo/NCBITaxon_9779) - -#### Added -- [elephant trunk](http://purl.obolibrary.org/obo/UBERON_0014479) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9779](http://purl.obolibrary.org/obo/NCBITaxon_9779) - - -### embryonic cement gland `http://purl.obolibrary.org/obo/UBERON_0005093` -#### Removed -- [embryonic cement gland](http://purl.obolibrary.org/obo/UBERON_0005093) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [embryonic cement gland](http://purl.obolibrary.org/obo/UBERON_0005093) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### embryonic facial prominence `http://purl.obolibrary.org/obo/UBERON_0012314` -#### Removed -- [embryonic facial prominence](http://purl.obolibrary.org/obo/UBERON_0012314) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [embryonic facial prominence](http://purl.obolibrary.org/obo/UBERON_0012314) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### enamel `http://purl.obolibrary.org/obo/UBERON_0001752` -#### Removed -- [enamel](http://purl.obolibrary.org/obo/UBERON_0001752) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [enamel](http://purl.obolibrary.org/obo/UBERON_0001752) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### endocrine system `http://purl.obolibrary.org/obo/UBERON_0000949` -#### Removed -- [endocrine system](http://purl.obolibrary.org/obo/UBERON_0000949) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [endocrine system](http://purl.obolibrary.org/obo/UBERON_0000949) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### endocuticle `http://purl.obolibrary.org/obo/UBERON_0003202` -#### Removed -- [endocuticle](http://purl.obolibrary.org/obo/UBERON_0003202) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - -#### Added -- [endocuticle](http://purl.obolibrary.org/obo/UBERON_0003202) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - -### endometrium `http://purl.obolibrary.org/obo/UBERON_0001295` -#### Removed -- [endometrium](http://purl.obolibrary.org/obo/UBERON_0001295) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [endometrium](http://purl.obolibrary.org/obo/UBERON_0001295) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### endoskeleton `http://purl.obolibrary.org/obo/UBERON_0010362` -#### Removed -- [endoskeleton](http://purl.obolibrary.org/obo/UBERON_0010362) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [endoskeleton](http://purl.obolibrary.org/obo/UBERON_0010362) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### endostyle `http://purl.obolibrary.org/obo/UBERON_0006870` -#### Removed -- [endostyle](http://purl.obolibrary.org/obo/UBERON_0006870) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia:Endostyle" - -#### Added -- [endostyle](http://purl.obolibrary.org/obo/UBERON_0006870) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia:Endostyle" - - -### endothelium `http://purl.obolibrary.org/obo/UBERON_0001986` -#### Removed -- [endothelium](http://purl.obolibrary.org/obo/UBERON_0001986) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [endothelium](http://purl.obolibrary.org/obo/UBERON_0001986) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### entepicondylar foramen `http://purl.obolibrary.org/obo/UBERON_0013207` -#### Removed -- [entepicondylar foramen](http://purl.obolibrary.org/obo/UBERON_0013207) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - -#### Added -- [entepicondylar foramen](http://purl.obolibrary.org/obo/UBERON_0013207) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - -### enteropneust collar `http://purl.obolibrary.org/obo/UBERON_0035604` -#### Removed -- [enteropneust collar](http://purl.obolibrary.org/obo/UBERON_0035604) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_10220](http://purl.obolibrary.org/obo/NCBITaxon_10220) - -#### Added -- [enteropneust collar](http://purl.obolibrary.org/obo/UBERON_0035604) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_10220](http://purl.obolibrary.org/obo/NCBITaxon_10220) - - -### enteropneust proboscis `http://purl.obolibrary.org/obo/UBERON_0035603` -#### Removed -- [enteropneust proboscis](http://purl.obolibrary.org/obo/UBERON_0035603) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_10220](http://purl.obolibrary.org/obo/NCBITaxon_10220) - -#### Added -- [enteropneust proboscis](http://purl.obolibrary.org/obo/UBERON_0035603) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_10220](http://purl.obolibrary.org/obo/NCBITaxon_10220) - - -### enteropneust trunk `http://purl.obolibrary.org/obo/UBERON_0035605` -#### Removed -- [enteropneust trunk](http://purl.obolibrary.org/obo/UBERON_0035605) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_10220](http://purl.obolibrary.org/obo/NCBITaxon_10220) - -#### Added -- [enteropneust trunk](http://purl.obolibrary.org/obo/UBERON_0035605) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_10220](http://purl.obolibrary.org/obo/NCBITaxon_10220) - - -### entopallium `http://purl.obolibrary.org/obo/UBERON_0014759` -#### Removed -- [entopallium](http://purl.obolibrary.org/obo/UBERON_0014759) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [entopallium](http://purl.obolibrary.org/obo/UBERON_0014759) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### epididymis `http://purl.obolibrary.org/obo/UBERON_0001301` -#### Removed -- [epididymis](http://purl.obolibrary.org/obo/UBERON_0001301) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [epididymis](http://purl.obolibrary.org/obo/UBERON_0001301) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### epigonal organ `http://purl.obolibrary.org/obo/UBERON_0010014` -#### Removed -- [epigonal organ](http://purl.obolibrary.org/obo/UBERON_0010014) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7778](http://purl.obolibrary.org/obo/NCBITaxon_7778) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [epigonal organ](http://purl.obolibrary.org/obo/UBERON_0010014) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7778](http://purl.obolibrary.org/obo/NCBITaxon_7778) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### epihyoidean `http://purl.obolibrary.org/obo/UBERON_0011650` -#### Removed -- [epihyoidean](http://purl.obolibrary.org/obo/UBERON_0011650) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_119203](http://purl.obolibrary.org/obo/NCBITaxon_119203) - -#### Added -- [epihyoidean](http://purl.obolibrary.org/obo/UBERON_0011650) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_119203](http://purl.obolibrary.org/obo/NCBITaxon_119203) - - -### epihyoideum `http://purl.obolibrary.org/obo/UBERON_0036270` -#### Removed -- [epihyoideum](http://purl.obolibrary.org/obo/UBERON_0036270) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_338153](http://purl.obolibrary.org/obo/NCBITaxon_338153) - -#### Added -- [epihyoideum](http://purl.obolibrary.org/obo/UBERON_0036270) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_338153](http://purl.obolibrary.org/obo/NCBITaxon_338153) - - -### epipubic bone `http://purl.obolibrary.org/obo/UBERON_0013204` -#### Removed -- [epipubic bone](http://purl.obolibrary.org/obo/UBERON_0013204) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [epipubic bone](http://purl.obolibrary.org/obo/UBERON_0013204) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### epithelial-mesenchymal boundary `http://purl.obolibrary.org/obo/UBERON_0012437` -#### Removed -- [epithelial-mesenchymal boundary](http://purl.obolibrary.org/obo/UBERON_0012437) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [epithelial-mesenchymal boundary](http://purl.obolibrary.org/obo/UBERON_0012437) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### epithelium `http://purl.obolibrary.org/obo/UBERON_0000483` -#### Removed -- [epithelium](http://purl.obolibrary.org/obo/UBERON_0000483) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33208](http://purl.obolibrary.org/obo/NCBITaxon_33208) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "http://palaeos.com/metazoa/porifera/homoscleromorpha.html" - -#### Added -- [epithelium](http://purl.obolibrary.org/obo/UBERON_0000483) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33208](http://purl.obolibrary.org/obo/NCBITaxon_33208) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "http://palaeos.com/metazoa/porifera/homoscleromorpha.html" - - -### equine distal sesamoid `http://purl.obolibrary.org/obo/UBERON_0010759` -#### Removed -- [equine distal sesamoid](http://purl.obolibrary.org/obo/UBERON_0010759) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9788](http://purl.obolibrary.org/obo/NCBITaxon_9788) - -#### Added -- [equine distal sesamoid](http://purl.obolibrary.org/obo/UBERON_0010759) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9788](http://purl.obolibrary.org/obo/NCBITaxon_9788) - - -### equine splint bone `http://purl.obolibrary.org/obo/UBERON_0012267` -#### Removed -- [equine splint bone](http://purl.obolibrary.org/obo/UBERON_0012267) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9788](http://purl.obolibrary.org/obo/NCBITaxon_9788) - -#### Added -- [equine splint bone](http://purl.obolibrary.org/obo/UBERON_0012267) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9788](http://purl.obolibrary.org/obo/NCBITaxon_9788) - - -### erectile tissue `http://purl.obolibrary.org/obo/UBERON_0008324` -#### Removed -- [erectile tissue](http://purl.obolibrary.org/obo/UBERON_0008324) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [erectile tissue](http://purl.obolibrary.org/obo/UBERON_0008324) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### ethmoidal vein `http://purl.obolibrary.org/obo/UBERON_8420001` - -#### Added -- [ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420001) [label](http://www.w3.org/2000/01/rdf-schema#label) "ethmoidal vein" - -- [ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420001) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that accompanies an ethmoidal artery and drains the ethmoidal cells." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://www.ncbi.nlm.nih.gov/books/NBK499826/" - - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Ethmoidal_veins" - -- [ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420001) [date](http://purl.org/dc/terms/date) "2024-08-28T09:55:00Z" - -- [ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420001) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:51770" - -- [ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420001) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140) - -- Class: [ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420001) - -- [ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420001) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) - -- [ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420001) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [ethmoid region](http://purl.obolibrary.org/obo/UBERON_0011241) - -- [ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420001) SubClassOf [craniocervical region vein](http://purl.obolibrary.org/obo/UBERON_0009141) - - -### exocrine system `http://purl.obolibrary.org/obo/UBERON_0002330` -#### Removed -- [exocrine system](http://purl.obolibrary.org/obo/UBERON_0002330) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [exocrine system](http://purl.obolibrary.org/obo/UBERON_0002330) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### exocuticle `http://purl.obolibrary.org/obo/UBERON_0003201` -#### Removed -- [exocuticle](http://purl.obolibrary.org/obo/UBERON_0003201) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - -#### Added -- [exocuticle](http://purl.obolibrary.org/obo/UBERON_0003201) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - -### external ear `http://purl.obolibrary.org/obo/UBERON_0001691` -#### Removed -- [external ear](http://purl.obolibrary.org/obo/UBERON_0001691) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - -#### Added -- [external ear](http://purl.obolibrary.org/obo/UBERON_0001691) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - -### exudate `http://purl.obolibrary.org/obo/UBERON_0007780` -#### Removed -- [exudate](http://purl.obolibrary.org/obo/UBERON_0007780) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [exudate](http://purl.obolibrary.org/obo/UBERON_0007780) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### fallopian tube `http://purl.obolibrary.org/obo/UBERON_0003889` -#### Removed -- [fallopian tube](http://purl.obolibrary.org/obo/UBERON_0003889) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [fallopian tube](http://purl.obolibrary.org/obo/UBERON_0003889) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### fat pad `http://purl.obolibrary.org/obo/UBERON_0003916` -#### Removed -- [fat pad](http://purl.obolibrary.org/obo/UBERON_0003916) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [fat pad](http://purl.obolibrary.org/obo/UBERON_0003916) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### feather `http://purl.obolibrary.org/obo/UBERON_0000022` -#### Removed -- [feather](http://purl.obolibrary.org/obo/UBERON_0000022) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_436491](http://purl.obolibrary.org/obo/NCBITaxon_436491) - -#### Added -- [feather](http://purl.obolibrary.org/obo/UBERON_0000022) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_436491](http://purl.obolibrary.org/obo/NCBITaxon_436491) - - -### feathered ear tuft `http://purl.obolibrary.org/obo/UBERON_0014448` -#### Removed -- [feathered ear tuft](http://purl.obolibrary.org/obo/UBERON_0014448) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_30458](http://purl.obolibrary.org/obo/NCBITaxon_30458) - -#### Added -- [feathered ear tuft](http://purl.obolibrary.org/obo/UBERON_0014448) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_30458](http://purl.obolibrary.org/obo/NCBITaxon_30458) - - -### femoral gland `http://purl.obolibrary.org/obo/UBERON_0011263` -#### Removed -- [femoral gland](http://purl.obolibrary.org/obo/UBERON_0011263) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8509](http://purl.obolibrary.org/obo/NCBITaxon_8509) - -#### Added -- [femoral gland](http://purl.obolibrary.org/obo/UBERON_0011263) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8509](http://purl.obolibrary.org/obo/NCBITaxon_8509) - - -### flexor pollicis longus muscle `http://purl.obolibrary.org/obo/UBERON_0008446` -#### Removed -- [flexor pollicis longus muscle](http://purl.obolibrary.org/obo/UBERON_0008446) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [flexor pollicis longus muscle](http://purl.obolibrary.org/obo/UBERON_0008446) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### foramen of Panizza `http://purl.obolibrary.org/obo/UBERON_0013220` -#### Removed -- [foramen of Panizza](http://purl.obolibrary.org/obo/UBERON_0013220) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8493](http://purl.obolibrary.org/obo/NCBITaxon_8493) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [foramen of Panizza](http://purl.obolibrary.org/obo/UBERON_0013220) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8493](http://purl.obolibrary.org/obo/NCBITaxon_8493) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### forehead `http://purl.obolibrary.org/obo/UBERON_0008200` -#### Removed -- [forehead](http://purl.obolibrary.org/obo/UBERON_0008200) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [forehead](http://purl.obolibrary.org/obo/UBERON_0008200) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### fourth trochanter `http://purl.obolibrary.org/obo/UBERON_0008787` -#### Removed -- [fourth trochanter](http://purl.obolibrary.org/obo/UBERON_0008787) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8492](http://purl.obolibrary.org/obo/NCBITaxon_8492) - -#### Added -- [fourth trochanter](http://purl.obolibrary.org/obo/UBERON_0008787) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8492](http://purl.obolibrary.org/obo/NCBITaxon_8492) - - -### fovea centralis `http://purl.obolibrary.org/obo/UBERON_0001786` -#### Removed -- [fovea centralis](http://purl.obolibrary.org/obo/UBERON_0001786) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [fovea centralis](http://purl.obolibrary.org/obo/UBERON_0001786) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### foveola of retina `http://purl.obolibrary.org/obo/UBERON_0018107` - -#### Added -- [foveola of retina](http://purl.obolibrary.org/obo/UBERON_0018107) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [foveola of retina](http://purl.obolibrary.org/obo/UBERON_0018107) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - - -### furcula `http://purl.obolibrary.org/obo/UBERON_0007841` -#### Removed -- [furcula](http://purl.obolibrary.org/obo/UBERON_0007841) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8492](http://purl.obolibrary.org/obo/NCBITaxon_8492) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "http://people.eku.edu/ritchisong/342notes5.htm" - -#### Added -- [furcula](http://purl.obolibrary.org/obo/UBERON_0007841) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8492](http://purl.obolibrary.org/obo/NCBITaxon_8492) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "http://people.eku.edu/ritchisong/342notes5.htm" - - -### future piston `http://purl.obolibrary.org/obo/UBERON_0034939` -#### Removed -- [future piston](http://purl.obolibrary.org/obo/UBERON_0034939) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_117569](http://purl.obolibrary.org/obo/NCBITaxon_117569) - -#### Added -- [future piston](http://purl.obolibrary.org/obo/UBERON_0034939) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_117569](http://purl.obolibrary.org/obo/NCBITaxon_117569) - - -### gastralium `http://purl.obolibrary.org/obo/UBERON_0010898` -#### Removed -- [gastralium](http://purl.obolibrary.org/obo/UBERON_0010898) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [gastralium](http://purl.obolibrary.org/obo/UBERON_0010898) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### gastropod albumen gland `http://purl.obolibrary.org/obo/UBERON_0008935` -#### Removed -- [gastropod albumen gland](http://purl.obolibrary.org/obo/UBERON_0008935) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6448](http://purl.obolibrary.org/obo/NCBITaxon_6448) - -#### Added -- [gastropod albumen gland](http://purl.obolibrary.org/obo/UBERON_0008935) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6448](http://purl.obolibrary.org/obo/NCBITaxon_6448) - - -### gastropod genital pore `http://purl.obolibrary.org/obo/UBERON_0008936` -#### Removed -- [gastropod genital pore](http://purl.obolibrary.org/obo/UBERON_0008936) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6448](http://purl.obolibrary.org/obo/NCBITaxon_6448) - -#### Added -- [gastropod genital pore](http://purl.obolibrary.org/obo/UBERON_0008936) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6448](http://purl.obolibrary.org/obo/NCBITaxon_6448) - - -### gastrula stage `http://purl.obolibrary.org/obo/UBERON_0000109` -#### Removed -- [gastrula stage](http://purl.obolibrary.org/obo/UBERON_0000109) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [gastrula stage](http://purl.obolibrary.org/obo/UBERON_0000109) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### genital labium `http://purl.obolibrary.org/obo/UBERON_0004084` -#### Removed -- [genital labium](http://purl.obolibrary.org/obo/UBERON_0004084) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - -#### Added -- [genital labium](http://purl.obolibrary.org/obo/UBERON_0004084) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - - -### germ layer `http://purl.obolibrary.org/obo/UBERON_0000923` -#### Removed -- [germ layer](http://purl.obolibrary.org/obo/UBERON_0000923) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [germ layer](http://purl.obolibrary.org/obo/UBERON_0000923) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### germ ring `http://purl.obolibrary.org/obo/UBERON_0002541` -#### Removed -- [germ ring](http://purl.obolibrary.org/obo/UBERON_0002541) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [germ ring](http://purl.obolibrary.org/obo/UBERON_0002541) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### gill `http://purl.obolibrary.org/obo/UBERON_0002535` -#### Removed -- [gill](http://purl.obolibrary.org/obo/UBERON_0002535) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [gill](http://purl.obolibrary.org/obo/UBERON_0002535) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### gingival groove `http://purl.obolibrary.org/obo/UBERON_0008805` -#### Removed -- [gingival groove](http://purl.obolibrary.org/obo/UBERON_0008805) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [gingival groove](http://purl.obolibrary.org/obo/UBERON_0008805) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### gizzard `http://purl.obolibrary.org/obo/UBERON_0005052` -#### Removed -- [gizzard](http://purl.obolibrary.org/obo/UBERON_0005052) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [gizzard](http://purl.obolibrary.org/obo/UBERON_0005052) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### gland `http://purl.obolibrary.org/obo/UBERON_0002530` -#### Removed -- [gland](http://purl.obolibrary.org/obo/UBERON_0002530) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [gland](http://purl.obolibrary.org/obo/UBERON_0002530) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### glaucothoe stage `http://purl.obolibrary.org/obo/UBERON_0014861` -#### Removed -- [glaucothoe stage](http://purl.obolibrary.org/obo/UBERON_0014861) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6657](http://purl.obolibrary.org/obo/NCBITaxon_6657) - -#### Added -- [glaucothoe stage](http://purl.obolibrary.org/obo/UBERON_0014861) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6657](http://purl.obolibrary.org/obo/NCBITaxon_6657) - - -### granulation tissue `http://purl.obolibrary.org/obo/UBERON_0010211` -#### Removed -- [granulation tissue](http://purl.obolibrary.org/obo/UBERON_0010211) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [granulation tissue](http://purl.obolibrary.org/obo/UBERON_0010211) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### gravid organism `http://purl.obolibrary.org/obo/UBERON_0009097` -#### Removed -- [gravid organism](http://purl.obolibrary.org/obo/UBERON_0009097) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [gravid organism](http://purl.obolibrary.org/obo/UBERON_0009097) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### growth plate cartilage `http://purl.obolibrary.org/obo/UBERON_0004129` -#### Removed -- [growth plate cartilage](http://purl.obolibrary.org/obo/UBERON_0004129) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [growth plate cartilage](http://purl.obolibrary.org/obo/UBERON_0004129) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### gustatory system `http://purl.obolibrary.org/obo/UBERON_0001033` -#### Removed -- [gustatory system](http://purl.obolibrary.org/obo/UBERON_0001033) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [gustatory system](http://purl.obolibrary.org/obo/UBERON_0001033) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### gyrus `http://purl.obolibrary.org/obo/UBERON_0000200` -#### Removed -- [gyrus](http://purl.obolibrary.org/obo/UBERON_0000200) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [gyrus](http://purl.obolibrary.org/obo/UBERON_0000200) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### haemolymphatic fluid `http://purl.obolibrary.org/obo/UBERON_0000179` -#### Removed -- [haemolymphatic fluid](http://purl.obolibrary.org/obo/UBERON_0000179) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [haemolymphatic fluid](http://purl.obolibrary.org/obo/UBERON_0000179) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### haemolymphatic fluid-testis barrier `http://purl.obolibrary.org/obo/UBERON_0014914` -#### Removed -- [haemolymphatic fluid-testis barrier](http://purl.obolibrary.org/obo/UBERON_0014914) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [haemolymphatic fluid-testis barrier](http://purl.obolibrary.org/obo/UBERON_0014914) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### hair inner root sheath `http://purl.obolibrary.org/obo/UBERON_0005941` - -#### Added -- [hair inner root sheath](http://purl.obolibrary.org/obo/UBERON_0005941) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [hair inner root sheath](http://purl.obolibrary.org/obo/UBERON_0005941) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - - -### hair medulla `http://purl.obolibrary.org/obo/UBERON_0005184` - -#### Added -- [hair medulla](http://purl.obolibrary.org/obo/UBERON_0005184) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [hair medulla](http://purl.obolibrary.org/obo/UBERON_0005184) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - - -### hair outer root sheath `http://purl.obolibrary.org/obo/UBERON_0005942` - -#### Added -- [hair outer root sheath](http://purl.obolibrary.org/obo/UBERON_0005942) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [hair outer root sheath](http://purl.obolibrary.org/obo/UBERON_0005942) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - - -### hair shaft `http://purl.obolibrary.org/obo/UBERON_0002074` - -#### Added -- [hair shaft](http://purl.obolibrary.org/obo/UBERON_0002074) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [hair shaft](http://purl.obolibrary.org/obo/UBERON_0002074) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - - -### hairline `http://purl.obolibrary.org/obo/UBERON_0004104` -#### Removed -- [hairline](http://purl.obolibrary.org/obo/UBERON_0004104) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -#### Added -- [hairline](http://purl.obolibrary.org/obo/UBERON_0004104) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - - -### hatching gland `http://purl.obolibrary.org/obo/UBERON_0002538` -#### Removed -- [hatching gland](http://purl.obolibrary.org/obo/UBERON_0002538) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [hatching gland](http://purl.obolibrary.org/obo/UBERON_0002538) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### head `http://purl.obolibrary.org/obo/UBERON_0000033` -#### Removed -- [head](http://purl.obolibrary.org/obo/UBERON_0000033) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [head](http://purl.obolibrary.org/obo/UBERON_0000033) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### head fold of embryonic disc `http://purl.obolibrary.org/obo/UBERON_0009746` -#### Removed -- [head fold of embryonic disc](http://purl.obolibrary.org/obo/UBERON_0009746) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [head fold of embryonic disc](http://purl.obolibrary.org/obo/UBERON_0009746) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### headfoot `http://purl.obolibrary.org/obo/UBERON_0008943` -#### Removed -- [headfoot](http://purl.obolibrary.org/obo/UBERON_0008943) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - -#### Added -- [headfoot](http://purl.obolibrary.org/obo/UBERON_0008943) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - - -### heart `http://purl.obolibrary.org/obo/UBERON_0000948` -#### Removed -- [heart](http://purl.obolibrary.org/obo/UBERON_0000948) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [heart](http://purl.obolibrary.org/obo/UBERON_0000948) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### hematopoietic system `http://purl.obolibrary.org/obo/UBERON_0002390` -#### Removed -- [hematopoietic system](http://purl.obolibrary.org/obo/UBERON_0002390) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [hematopoietic system](http://purl.obolibrary.org/obo/UBERON_0002390) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### hemipenis `http://purl.obolibrary.org/obo/UBERON_0008812` -#### Removed -- [hemipenis](http://purl.obolibrary.org/obo/UBERON_0008812) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8509](http://purl.obolibrary.org/obo/NCBITaxon_8509) - -#### Added -- [hemipenis](http://purl.obolibrary.org/obo/UBERON_0008812) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8509](http://purl.obolibrary.org/obo/NCBITaxon_8509) - - -### hemolymphoid system `http://purl.obolibrary.org/obo/UBERON_0002193` -#### Removed -- [hemolymphoid system](http://purl.obolibrary.org/obo/UBERON_0002193) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [hemolymphoid system](http://purl.obolibrary.org/obo/UBERON_0002193) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### hepatic cecum `http://purl.obolibrary.org/obo/UBERON_0012474` -#### Removed -- [hepatic cecum](http://purl.obolibrary.org/obo/UBERON_0012474) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7735](http://purl.obolibrary.org/obo/NCBITaxon_7735) - -#### Added -- [hepatic cecum](http://purl.obolibrary.org/obo/UBERON_0012474) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7735](http://purl.obolibrary.org/obo/NCBITaxon_7735) - - -### hepatobiliary system `http://purl.obolibrary.org/obo/UBERON_0002423` -#### Removed -- [hepatobiliary system](http://purl.obolibrary.org/obo/UBERON_0002423) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [hepatobiliary system](http://purl.obolibrary.org/obo/UBERON_0002423) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### hepatopancreas `http://purl.obolibrary.org/obo/UBERON_0010264` -#### Removed -- [hepatopancreas](http://purl.obolibrary.org/obo/UBERON_0010264) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33317](http://purl.obolibrary.org/obo/NCBITaxon_33317) - -#### Added -- [hepatopancreas](http://purl.obolibrary.org/obo/UBERON_0010264) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33317](http://purl.obolibrary.org/obo/NCBITaxon_33317) - - -### hindbrain `http://purl.obolibrary.org/obo/UBERON_0002028` -#### Removed -- [hindbrain](http://purl.obolibrary.org/obo/UBERON_0002028) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_89593](http://purl.obolibrary.org/obo/NCBITaxon_89593) - -#### Added -- [hindbrain](http://purl.obolibrary.org/obo/UBERON_0002028) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_89593](http://purl.obolibrary.org/obo/NCBITaxon_89593) - - -### hippocampal formation `http://purl.obolibrary.org/obo/UBERON_0002421` -#### Removed -- [hippocampal formation](http://purl.obolibrary.org/obo/UBERON_0002421) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia:Hippocampus" - -#### Added -- [hippocampal formation](http://purl.obolibrary.org/obo/UBERON_0002421) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia:Hippocampus" - - -### honey `http://purl.obolibrary.org/obo/UBERON_0036016` -#### Removed -- [honey](http://purl.obolibrary.org/obo/UBERON_0036016) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7434](http://purl.obolibrary.org/obo/NCBITaxon_7434) - -#### Added -- [honey](http://purl.obolibrary.org/obo/UBERON_0036016) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7434](http://purl.obolibrary.org/obo/NCBITaxon_7434) - - -### hoof `http://purl.obolibrary.org/obo/UBERON_0008963` -#### Removed -- [hoof](http://purl.obolibrary.org/obo/UBERON_0008963) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_314145](http://purl.obolibrary.org/obo/NCBITaxon_314145) - -#### Added -- [hoof](http://purl.obolibrary.org/obo/UBERON_0008963) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_314145](http://purl.obolibrary.org/obo/NCBITaxon_314145) - - -### horizontal septum `http://purl.obolibrary.org/obo/UBERON_0003901` -#### Removed -- [horizontal septum](http://purl.obolibrary.org/obo/UBERON_0003901) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0073040584" - -#### Added -- [horizontal septum](http://purl.obolibrary.org/obo/UBERON_0003901) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0073040584" - - -### horn `http://purl.obolibrary.org/obo/UBERON_0006967` -#### Removed -- [horn](http://purl.obolibrary.org/obo/UBERON_0006967) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [horn](http://purl.obolibrary.org/obo/UBERON_0006967) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### hump `http://purl.obolibrary.org/obo/UBERON_0013657` -#### Removed -- [hump](http://purl.obolibrary.org/obo/UBERON_0013657) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9836](http://purl.obolibrary.org/obo/NCBITaxon_9836) - -#### Added -- [hump](http://purl.obolibrary.org/obo/UBERON_0013657) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9836](http://purl.obolibrary.org/obo/NCBITaxon_9836) - - -### hyperpallium `http://purl.obolibrary.org/obo/UBERON_0007347` -#### Removed -- [hyperpallium](http://purl.obolibrary.org/obo/UBERON_0007347) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [hyperpallium](http://purl.obolibrary.org/obo/UBERON_0007347) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### hyperpallium apicale `http://purl.obolibrary.org/obo/UBERON_0014757` -#### Removed -- [hyperpallium apicale](http://purl.obolibrary.org/obo/UBERON_0014757) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [hyperpallium apicale](http://purl.obolibrary.org/obo/UBERON_0014757) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### hypochord `http://purl.obolibrary.org/obo/UBERON_0003058` -#### Removed -- [hypochord](http://purl.obolibrary.org/obo/UBERON_0003058) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [hypochord](http://purl.obolibrary.org/obo/UBERON_0003058) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### hypogastric nerve `http://purl.obolibrary.org/obo/UBERON_0005303` -#### Removed -- [hypogastric nerve](http://purl.obolibrary.org/obo/UBERON_0005303) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [hypogastric nerve](http://purl.obolibrary.org/obo/UBERON_0005303) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### hypoglossal canal `http://purl.obolibrary.org/obo/UBERON_0006682` -#### Removed -- [hypoglossal canal](http://purl.obolibrary.org/obo/UBERON_0006682) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - -#### Added -- [hypoglossal canal](http://purl.obolibrary.org/obo/UBERON_0006682) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - -### hypoglossal nerve `http://purl.obolibrary.org/obo/UBERON_0001650` -#### Removed -- [hypoglossal nerve](http://purl.obolibrary.org/obo/UBERON_0001650) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - -#### Added -- [hypoglossal nerve](http://purl.obolibrary.org/obo/UBERON_0001650) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - -### hypophyseal tube `http://purl.obolibrary.org/obo/UBERON_0009921` -#### Removed -- [hypophyseal tube](http://purl.obolibrary.org/obo/UBERON_0009921) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7745](http://purl.obolibrary.org/obo/NCBITaxon_7745) - -#### Added -- [hypophyseal tube](http://purl.obolibrary.org/obo/UBERON_0009921) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7745](http://purl.obolibrary.org/obo/NCBITaxon_7745) - - -### hypothalamus-pituitary axis `http://purl.obolibrary.org/obo/UBERON_0004092` -#### Removed -- [hypothalamus-pituitary axis](http://purl.obolibrary.org/obo/UBERON_0004092) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [hypothalamus-pituitary axis](http://purl.obolibrary.org/obo/UBERON_0004092) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### ileocecal junction `http://purl.obolibrary.org/obo/UBERON_0001073` -#### Removed -- [ileocecal junction](http://purl.obolibrary.org/obo/UBERON_0001073) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [ileocecal junction](http://purl.obolibrary.org/obo/UBERON_0001073) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### ilio-marsupialis muscle `http://purl.obolibrary.org/obo/UBERON_0013715` -#### Removed -- [ilio-marsupialis muscle](http://purl.obolibrary.org/obo/UBERON_0013715) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9263](http://purl.obolibrary.org/obo/NCBITaxon_9263) - -#### Added -- [ilio-marsupialis muscle](http://purl.obolibrary.org/obo/UBERON_0013715) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9263](http://purl.obolibrary.org/obo/NCBITaxon_9263) - - -### iliotibialis muscle `http://purl.obolibrary.org/obo/UBERON_0014888` -#### Removed -- [iliotibialis muscle](http://purl.obolibrary.org/obo/UBERON_0014888) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8292](http://purl.obolibrary.org/obo/NCBITaxon_8292) - -#### Added -- [iliotibialis muscle](http://purl.obolibrary.org/obo/UBERON_0014888) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8292](http://purl.obolibrary.org/obo/NCBITaxon_8292) - - -### imaginal disc `http://purl.obolibrary.org/obo/UBERON_0000939` -#### Removed -- [imaginal disc](http://purl.obolibrary.org/obo/UBERON_0000939) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [imaginal disc](http://purl.obolibrary.org/obo/UBERON_0000939) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### incus bone `http://purl.obolibrary.org/obo/UBERON_0001688` -#### Removed -- [incus bone](http://purl.obolibrary.org/obo/UBERON_0001688) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32525](http://purl.obolibrary.org/obo/NCBITaxon_32525) - -#### Added -- [incus bone](http://purl.obolibrary.org/obo/UBERON_0001688) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32525](http://purl.obolibrary.org/obo/NCBITaxon_32525) - - -### infant stage `http://purl.obolibrary.org/obo/UBERON_0034920` -#### Removed -- [infant stage](http://purl.obolibrary.org/obo/UBERON_0034920) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [infant stage](http://purl.obolibrary.org/obo/UBERON_0034920) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### infralabial gland `http://purl.obolibrary.org/obo/UBERON_0010050` -#### Removed -- [infralabial gland](http://purl.obolibrary.org/obo/UBERON_0010050) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - -#### Added -- [infralabial gland](http://purl.obolibrary.org/obo/UBERON_0010050) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - -### infraorbital sinus `http://purl.obolibrary.org/obo/UBERON_0011985` -#### Removed -- [infraorbital sinus](http://purl.obolibrary.org/obo/UBERON_0011985) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [infraorbital sinus](http://purl.obolibrary.org/obo/UBERON_0011985) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### infundibulum of hair follicle `http://purl.obolibrary.org/obo/UBERON_0005968` - -#### Added -- [infundibulum of hair follicle](http://purl.obolibrary.org/obo/UBERON_0005968) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [infundibulum of hair follicle](http://purl.obolibrary.org/obo/UBERON_0005968) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - - -### ingested food `http://purl.obolibrary.org/obo/UBERON_0012112` -#### Removed -- [ingested food](http://purl.obolibrary.org/obo/UBERON_0012112) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [ingested food](http://purl.obolibrary.org/obo/UBERON_0012112) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### inguinal canal `http://purl.obolibrary.org/obo/UBERON_0003702` -#### Removed -- [inguinal canal](http://purl.obolibrary.org/obo/UBERON_0003702) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [inguinal canal](http://purl.obolibrary.org/obo/UBERON_0003702) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### inner chondrogenic layer of perichondrium `http://purl.obolibrary.org/obo/UBERON_0008304` -#### Removed -- [inner chondrogenic layer of perichondrium](http://purl.obolibrary.org/obo/UBERON_0008304) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [inner chondrogenic layer of perichondrium](http://purl.obolibrary.org/obo/UBERON_0008304) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### inner medulla of kidney `http://purl.obolibrary.org/obo/UBERON_0001294` -#### Removed -- [inner medulla of kidney](http://purl.obolibrary.org/obo/UBERON_0001294) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "GO:0072053" - -#### Added -- [inner medulla of kidney](http://purl.obolibrary.org/obo/UBERON_0001294) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "GO:0072053" - - -### insect abdomen `http://purl.obolibrary.org/obo/UBERON_6000020` -#### Removed -- [insect abdomen](http://purl.obolibrary.org/obo/UBERON_6000020) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect abdomen](http://purl.obolibrary.org/obo/UBERON_6000020) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect adult integumentary system `http://purl.obolibrary.org/obo/UBERON_6005396` -#### Removed -- [insect adult integumentary system](http://purl.obolibrary.org/obo/UBERON_6005396) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect adult integumentary system](http://purl.obolibrary.org/obo/UBERON_6005396) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect adult muscle system `http://purl.obolibrary.org/obo/UBERON_6003218` -#### Removed -- [insect adult muscle system](http://purl.obolibrary.org/obo/UBERON_6003218) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect adult muscle system](http://purl.obolibrary.org/obo/UBERON_6003218) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect adult nervous system `http://purl.obolibrary.org/obo/UBERON_6003559` -#### Removed -- [insect adult nervous system](http://purl.obolibrary.org/obo/UBERON_6003559) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect adult nervous system](http://purl.obolibrary.org/obo/UBERON_6003559) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect adult segment `http://purl.obolibrary.org/obo/UBERON_6003006` -#### Removed -- [insect adult segment](http://purl.obolibrary.org/obo/UBERON_6003006) EquivalentTo [organismal segment](http://purl.obolibrary.org/obo/UBERON_0000914) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [adult organism](http://purl.obolibrary.org/obo/UBERON_0007023)) and ([RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557)) - -- [insect adult segment](http://purl.obolibrary.org/obo/UBERON_6003006) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "https://github.com/obophenotype/uberon/issues/2050" - -- [insect adult segment](http://purl.obolibrary.org/obo/UBERON_6003006) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect adult segment](http://purl.obolibrary.org/obo/UBERON_6003006) EquivalentTo [organismal segment](http://purl.obolibrary.org/obo/UBERON_0000914) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [adult organism](http://purl.obolibrary.org/obo/UBERON_0007023)) and ([RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557)) - -- [insect adult segment](http://purl.obolibrary.org/obo/UBERON_6003006) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect anterior ectoderm `http://purl.obolibrary.org/obo/UBERON_6000119` -#### Removed -- [insect anterior ectoderm](http://purl.obolibrary.org/obo/UBERON_6000119) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect anterior ectoderm](http://purl.obolibrary.org/obo/UBERON_6000119) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect chorionic specialization `http://purl.obolibrary.org/obo/UBERON_6007248` -#### Removed -- [insect chorionic specialization](http://purl.obolibrary.org/obo/UBERON_6007248) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect chorionic specialization](http://purl.obolibrary.org/obo/UBERON_6007248) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect circulatory system primordium `http://purl.obolibrary.org/obo/UBERON_6005461` -#### Removed -- [insect circulatory system primordium](http://purl.obolibrary.org/obo/UBERON_6005461) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect circulatory system primordium](http://purl.obolibrary.org/obo/UBERON_6005461) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect cuticular specialization `http://purl.obolibrary.org/obo/UBERON_6007245` -#### Removed -- [insect cuticular specialization](http://purl.obolibrary.org/obo/UBERON_6007245) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect cuticular specialization](http://purl.obolibrary.org/obo/UBERON_6007245) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect ectoderm anlage `http://purl.obolibrary.org/obo/UBERON_6005427` -#### Removed -- [insect ectoderm anlage](http://purl.obolibrary.org/obo/UBERON_6005427) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect ectoderm anlage](http://purl.obolibrary.org/obo/UBERON_6005427) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect embryonic antennal segment `http://purl.obolibrary.org/obo/UBERON_6000160` -#### Removed -- [insect embryonic antennal segment](http://purl.obolibrary.org/obo/UBERON_6000160) EquivalentTo [antennal segment](http://purl.obolibrary.org/obo/UBERON_6000009) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [embryonic head](http://purl.obolibrary.org/obo/UBERON_0008816)) and ([RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557)) - -#### Added -- [insect embryonic antennal segment](http://purl.obolibrary.org/obo/UBERON_6000160) EquivalentTo [antennal segment](http://purl.obolibrary.org/obo/UBERON_6000009) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [embryonic head](http://purl.obolibrary.org/obo/UBERON_0008816)) and ([RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557)) - - -### insect embryonic head segment `http://purl.obolibrary.org/obo/UBERON_6000157` -#### Removed -- [insect embryonic head segment](http://purl.obolibrary.org/obo/UBERON_6000157) EquivalentTo [organismal segment](http://purl.obolibrary.org/obo/UBERON_0000914) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [embryonic head](http://purl.obolibrary.org/obo/UBERON_0008816)) and ([RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557)) - -#### Added -- [insect embryonic head segment](http://purl.obolibrary.org/obo/UBERON_6000157) EquivalentTo [organismal segment](http://purl.obolibrary.org/obo/UBERON_0000914) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [embryonic head](http://purl.obolibrary.org/obo/UBERON_0008816)) and ([RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557)) - - -### insect embryonic optic lobe primordium `http://purl.obolibrary.org/obo/UBERON_6000186` -#### Removed -- [insect embryonic optic lobe primordium](http://purl.obolibrary.org/obo/UBERON_6000186) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect embryonic optic lobe primordium](http://purl.obolibrary.org/obo/UBERON_6000186) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect embryonic procephalic segment `http://purl.obolibrary.org/obo/UBERON_6000158` -#### Removed -- [insect embryonic procephalic segment](http://purl.obolibrary.org/obo/UBERON_6000158) EquivalentTo [procephalic segment](http://purl.obolibrary.org/obo/UBERON_6000007) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [embryonic head](http://purl.obolibrary.org/obo/UBERON_0008816)) and ([RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557)) - -#### Added -- [insect embryonic procephalic segment](http://purl.obolibrary.org/obo/UBERON_6000158) EquivalentTo [procephalic segment](http://purl.obolibrary.org/obo/UBERON_6000007) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [embryonic head](http://purl.obolibrary.org/obo/UBERON_0008816)) and ([RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557)) - - -### insect embryonic segment `http://purl.obolibrary.org/obo/UBERON_6000154` -#### Removed -- [insect embryonic segment](http://purl.obolibrary.org/obo/UBERON_6000154) EquivalentTo [organismal segment](http://purl.obolibrary.org/obo/UBERON_0000914) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [embryo](http://purl.obolibrary.org/obo/UBERON_0000922)) and ([RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557)) - -- [insect embryonic segment](http://purl.obolibrary.org/obo/UBERON_6000154) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -- [insect embryonic segment](http://purl.obolibrary.org/obo/UBERON_6000154) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "https://github.com/obophenotype/uberon/issues/2050" - -#### Added -- [insect embryonic segment](http://purl.obolibrary.org/obo/UBERON_6000154) EquivalentTo [organismal segment](http://purl.obolibrary.org/obo/UBERON_0000914) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [embryo](http://purl.obolibrary.org/obo/UBERON_0000922)) and ([RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557)) - -- [insect embryonic segment](http://purl.obolibrary.org/obo/UBERON_6000154) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect embryonic/larval circulatory system `http://purl.obolibrary.org/obo/UBERON_6001664` -#### Removed -- [insect embryonic/larval circulatory system](http://purl.obolibrary.org/obo/UBERON_6001664) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect embryonic/larval circulatory system](http://purl.obolibrary.org/obo/UBERON_6001664) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect embryonic/larval digestive system `http://purl.obolibrary.org/obo/UBERON_6001842` -#### Removed -- [insect embryonic/larval digestive system](http://purl.obolibrary.org/obo/UBERON_6001842) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect embryonic/larval digestive system](http://purl.obolibrary.org/obo/UBERON_6001842) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect embryonic/larval integumentary system `http://purl.obolibrary.org/obo/UBERON_6005393` -#### Removed -- [insect embryonic/larval integumentary system](http://purl.obolibrary.org/obo/UBERON_6005393) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect embryonic/larval integumentary system](http://purl.obolibrary.org/obo/UBERON_6005393) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect embryonic/larval nervous system `http://purl.obolibrary.org/obo/UBERON_6001911` -#### Removed -- [insect embryonic/larval nervous system](http://purl.obolibrary.org/obo/UBERON_6001911) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect embryonic/larval nervous system](http://purl.obolibrary.org/obo/UBERON_6001911) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect epithelial furrow `http://purl.obolibrary.org/obo/UBERON_6007424` -#### Removed -- [insect epithelial furrow](http://purl.obolibrary.org/obo/UBERON_6007424) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect epithelial furrow](http://purl.obolibrary.org/obo/UBERON_6007424) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect external sensory organ `http://purl.obolibrary.org/obo/UBERON_6005168` -#### Removed -- [insect external sensory organ](http://purl.obolibrary.org/obo/UBERON_6005168) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "https://github.com/obophenotype/uberon/issues/2050" - -- [insect external sensory organ](http://purl.obolibrary.org/obo/UBERON_6005168) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect external sensory organ](http://purl.obolibrary.org/obo/UBERON_6005168) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect imaginal precursor `http://purl.obolibrary.org/obo/UBERON_6005023` -#### Removed -- [insect imaginal precursor](http://purl.obolibrary.org/obo/UBERON_6005023) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect imaginal precursor](http://purl.obolibrary.org/obo/UBERON_6005023) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect internal sense organ `http://purl.obolibrary.org/obo/UBERON_6007373` -#### Removed -- [insect internal sense organ](http://purl.obolibrary.org/obo/UBERON_6007373) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect internal sense organ](http://purl.obolibrary.org/obo/UBERON_6007373) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect labrum `http://purl.obolibrary.org/obo/UBERON_0005905` -#### Removed -- [insect labrum](http://purl.obolibrary.org/obo/UBERON_0005905) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - -#### Added -- [insect labrum](http://purl.obolibrary.org/obo/UBERON_0005905) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - -### insect larval head `http://purl.obolibrary.org/obo/UBERON_6001730` -#### Removed -- [insect larval head](http://purl.obolibrary.org/obo/UBERON_6001730) EquivalentTo [head](http://purl.obolibrary.org/obo/UBERON_0000033) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [larva](http://purl.obolibrary.org/obo/UBERON_0002548)) and ([RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557)) - -- [insect larval head](http://purl.obolibrary.org/obo/UBERON_6001730) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect larval head](http://purl.obolibrary.org/obo/UBERON_6001730) EquivalentTo [head](http://purl.obolibrary.org/obo/UBERON_0000033) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [larva](http://purl.obolibrary.org/obo/UBERON_0002548)) and ([RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557)) - -- [insect larval head](http://purl.obolibrary.org/obo/UBERON_6001730) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect larval head segment `http://purl.obolibrary.org/obo/UBERON_6001732` - -#### Added -- [insect larval head segment](http://purl.obolibrary.org/obo/UBERON_6001732) SubClassOf [insect larval segment](http://purl.obolibrary.org/obo/UBERON_6001729) - - -### insect larval ocular segment `http://purl.obolibrary.org/obo/UBERON_6001731` -#### Removed -- [insect larval ocular segment](http://purl.obolibrary.org/obo/UBERON_6001731) SubClassOf [insect larval segment](http://purl.obolibrary.org/obo/UBERON_6001729) - - - -### insect larval segment `http://purl.obolibrary.org/obo/UBERON_6001729` -#### Removed -- [insect larval segment](http://purl.obolibrary.org/obo/UBERON_6001729) EquivalentTo [organismal segment](http://purl.obolibrary.org/obo/UBERON_0000914) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [larva](http://purl.obolibrary.org/obo/UBERON_0002548)) and ([RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557)) - -- [insect larval segment](http://purl.obolibrary.org/obo/UBERON_6001729) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect larval segment](http://purl.obolibrary.org/obo/UBERON_6001729) EquivalentTo [organismal segment](http://purl.obolibrary.org/obo/UBERON_0000914) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [larva](http://purl.obolibrary.org/obo/UBERON_0002548)) and ([RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557)) - -- [insect larval segment](http://purl.obolibrary.org/obo/UBERON_6001729) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect larval sense organ `http://purl.obolibrary.org/obo/UBERON_6002639` -#### Removed -- [insect larval sense organ](http://purl.obolibrary.org/obo/UBERON_6002639) EquivalentTo [sense organ](http://purl.obolibrary.org/obo/UBERON_0000020) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [larva](http://purl.obolibrary.org/obo/UBERON_0002548)) and ([RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557)) - -- [insect larval sense organ](http://purl.obolibrary.org/obo/UBERON_6002639) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect larval sense organ](http://purl.obolibrary.org/obo/UBERON_6002639) EquivalentTo [sense organ](http://purl.obolibrary.org/obo/UBERON_0000020) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [larva](http://purl.obolibrary.org/obo/UBERON_0002548)) and ([RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557)) - -- [insect larval sense organ](http://purl.obolibrary.org/obo/UBERON_6002639) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect mesoderm anlage `http://purl.obolibrary.org/obo/UBERON_6000104` -#### Removed -- [insect mesoderm anlage](http://purl.obolibrary.org/obo/UBERON_6000104) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "https://github.com/obophenotype/uberon/issues/2050" - -- [insect mesoderm anlage](http://purl.obolibrary.org/obo/UBERON_6000104) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "cjm" - -#### Added -- [insect mesoderm anlage](http://purl.obolibrary.org/obo/UBERON_6000104) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "cjm" - - -### insect neurogenic region `http://purl.obolibrary.org/obo/UBERON_6001057` -#### Removed -- [insect neurogenic region](http://purl.obolibrary.org/obo/UBERON_6001057) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect neurogenic region](http://purl.obolibrary.org/obo/UBERON_6001057) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect non-connected developing system `http://purl.obolibrary.org/obo/UBERON_6040003` -#### Removed -- [insect non-connected developing system](http://purl.obolibrary.org/obo/UBERON_6040003) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect non-connected developing system](http://purl.obolibrary.org/obo/UBERON_6040003) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect ocular segment `http://purl.obolibrary.org/obo/UBERON_6000005` -#### Removed -- [insect ocular segment](http://purl.obolibrary.org/obo/UBERON_6000005) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "cjm" - -#### Added -- [insect ocular segment](http://purl.obolibrary.org/obo/UBERON_6000005) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "cjm" - - -### insect pharate adult `http://purl.obolibrary.org/obo/UBERON_6006011` -#### Removed -- [insect pharate adult](http://purl.obolibrary.org/obo/UBERON_6006011) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect pharate adult](http://purl.obolibrary.org/obo/UBERON_6006011) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect proneural cluster `http://purl.obolibrary.org/obo/UBERON_6001135` -#### Removed -- [insect proneural cluster](http://purl.obolibrary.org/obo/UBERON_6001135) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect proneural cluster](http://purl.obolibrary.org/obo/UBERON_6001135) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect region of integument `http://purl.obolibrary.org/obo/UBERON_6007284` -#### Removed -- [insect region of integument](http://purl.obolibrary.org/obo/UBERON_6007284) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect region of integument](http://purl.obolibrary.org/obo/UBERON_6007284) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect ring gland `http://purl.obolibrary.org/obo/UBERON_6001722` -#### Removed -- [insect ring gland](http://purl.obolibrary.org/obo/UBERON_6001722) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -- [insect ring gland](http://purl.obolibrary.org/obo/UBERON_6001722) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "https://github.com/obophenotype/uberon/issues/2050" - -#### Added -- [insect ring gland](http://purl.obolibrary.org/obo/UBERON_6001722) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect segment of leg `http://purl.obolibrary.org/obo/UBERON_6007150` -#### Removed -- [insect segment of leg](http://purl.obolibrary.org/obo/UBERON_6007150) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect segment of leg](http://purl.obolibrary.org/obo/UBERON_6007150) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect segmental subdivision of organ system `http://purl.obolibrary.org/obo/UBERON_6007331` -#### Removed -- [insect segmental subdivision of organ system](http://purl.obolibrary.org/obo/UBERON_6007331) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect segmental subdivision of organ system](http://purl.obolibrary.org/obo/UBERON_6007331) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect sensilla row `http://purl.obolibrary.org/obo/UBERON_6100153` -#### Removed -- [insect sensilla row](http://purl.obolibrary.org/obo/UBERON_6100153) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect sensilla row](http://purl.obolibrary.org/obo/UBERON_6100153) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect stomatogastric nervous system `http://purl.obolibrary.org/obo/UBERON_6005096` -#### Removed -- [insect stomatogastric nervous system](http://purl.obolibrary.org/obo/UBERON_6005096) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - -#### Added -- [insect stomatogastric nervous system](http://purl.obolibrary.org/obo/UBERON_6005096) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - -### insect synaptic neuropil `http://purl.obolibrary.org/obo/UBERON_6040005` -#### Removed -- [insect synaptic neuropil](http://purl.obolibrary.org/obo/UBERON_6040005) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect synaptic neuropil](http://purl.obolibrary.org/obo/UBERON_6040005) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect thorax `http://purl.obolibrary.org/obo/UBERON_6000015` -#### Removed -- [insect thorax](http://purl.obolibrary.org/obo/UBERON_6000015) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect thorax](http://purl.obolibrary.org/obo/UBERON_6000015) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect trachea `http://purl.obolibrary.org/obo/UBERON_6005043` -#### Removed -- [insect trachea](http://purl.obolibrary.org/obo/UBERON_6005043) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect trachea](http://purl.obolibrary.org/obo/UBERON_6005043) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### insect trunk ectoderm `http://purl.obolibrary.org/obo/UBERON_6007045` -#### Removed -- [insect trunk ectoderm](http://purl.obolibrary.org/obo/UBERON_6007045) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [insect trunk ectoderm](http://purl.obolibrary.org/obo/UBERON_6007045) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### instar larval stage `http://purl.obolibrary.org/obo/UBERON_0004730` -#### Removed -- [instar larval stage](http://purl.obolibrary.org/obo/UBERON_0004730) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [instar larval stage](http://purl.obolibrary.org/obo/UBERON_0004730) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### integument `http://purl.obolibrary.org/obo/UBERON_0002199` -#### Removed -- [integument](http://purl.obolibrary.org/obo/UBERON_0002199) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [integument](http://purl.obolibrary.org/obo/UBERON_0002199) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### inter-ambulacral area `http://purl.obolibrary.org/obo/UBERON_0008263` -#### Removed -- [inter-ambulacral area](http://purl.obolibrary.org/obo/UBERON_0008263) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - -#### Added -- [inter-ambulacral area](http://purl.obolibrary.org/obo/UBERON_0008263) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - - -### intermammary cleft `http://purl.obolibrary.org/obo/UBERON_0013770` -#### Removed -- [intermammary cleft](http://purl.obolibrary.org/obo/UBERON_0013770) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [intermammary cleft](http://purl.obolibrary.org/obo/UBERON_0013770) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### intermandibularis `http://purl.obolibrary.org/obo/UBERON_0010931` -#### Removed -- [intermandibularis](http://purl.obolibrary.org/obo/UBERON_0010931) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [intermandibularis](http://purl.obolibrary.org/obo/UBERON_0010931) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### intermaxillary gland (sensu Osteolepiformes) `http://purl.obolibrary.org/obo/UBERON_0017652` -#### Removed -- [intermaxillary gland (sensu Osteolepiformes)](http://purl.obolibrary.org/obo/UBERON_0017652) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) - -#### Added -- [intermaxillary gland (sensu Osteolepiformes)](http://purl.obolibrary.org/obo/UBERON_0017652) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) - - -### intermaxillary salivary gland `http://purl.obolibrary.org/obo/UBERON_0017653` -#### Removed -- [intermaxillary salivary gland](http://purl.obolibrary.org/obo/UBERON_0017653) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8292](http://purl.obolibrary.org/obo/NCBITaxon_8292) - -#### Added -- [intermaxillary salivary gland](http://purl.obolibrary.org/obo/UBERON_0017653) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8292](http://purl.obolibrary.org/obo/NCBITaxon_8292) - - -### internal naris `http://purl.obolibrary.org/obo/UBERON_0010425` -#### Removed -- [internal naris](http://purl.obolibrary.org/obo/UBERON_0010425) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) - -#### Added -- [internal naris](http://purl.obolibrary.org/obo/UBERON_0010425) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) - - -### interparietal bone `http://purl.obolibrary.org/obo/UBERON_0002229` -#### Removed -- [interparietal bone](http://purl.obolibrary.org/obo/UBERON_0002229) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "MP:0000077" - -#### Added -- [interparietal bone](http://purl.obolibrary.org/obo/UBERON_0002229) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "MP:0000077" - - -### interstitial fluid `http://purl.obolibrary.org/obo/UBERON_0000913` -#### Removed -- [interstitial fluid](http://purl.obolibrary.org/obo/UBERON_0000913) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [interstitial fluid](http://purl.obolibrary.org/obo/UBERON_0000913) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### interstitial part of hyperpallium apicale `http://purl.obolibrary.org/obo/UBERON_0014758` -#### Removed -- [interstitial part of hyperpallium apicale](http://purl.obolibrary.org/obo/UBERON_0014758) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [interstitial part of hyperpallium apicale](http://purl.obolibrary.org/obo/UBERON_0014758) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### intramural ureter `http://purl.obolibrary.org/obo/UBERON_8600110` - -#### Added -- [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) - -- [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) [contributor](http://purl.org/dc/terms/contributor) [X](https://orcid.org/0000-0003-2804-127X) - -- [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "intravesical ureter" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:33085409" - - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.53347/rID-23183" - -- [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) [date](http://purl.org/dc/terms/date) "2024-08-28T14:39:53Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - -- [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:77289" - -- [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) [label](http://www.w3.org/2000/01/rdf-schema#label) "intramural ureter" - -- [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "The terminal segment of the ureter that is continuous with the distal ureter, lies where the ureter enters the bladder and extends within the bladder wall. The intramural ureter is aperistaltic, serving as a reflux-preventing mechanism, preventing the backflow of urine from the bladder into the ureters." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:14142154" - - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-7655-4833](https://orcid.org/0000-0001-7655-4833) - -- [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) [hasOBONamespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" - -- [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-4341-3265](https://orcid.org/0000-0002-4341-3265) - -- [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600110" - -- Class: [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) - -- [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) SubClassOf [excretory tube](http://purl.obolibrary.org/obo/UBERON_0006555) - -- [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) SubClassOf [mesoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004120) - -- [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) SubClassOf [RO_0002150](http://purl.obolibrary.org/obo/RO_0002150) some [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) - -- [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [ureter](http://purl.obolibrary.org/obo/UBERON_0000056) - - -### intromittent organ `http://purl.obolibrary.org/obo/UBERON_0008811` -#### Removed -- [intromittent organ](http://purl.obolibrary.org/obo/UBERON_0008811) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [intromittent organ](http://purl.obolibrary.org/obo/UBERON_0008811) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### jaw region `http://purl.obolibrary.org/obo/UBERON_0011595` -#### Removed -- [jaw region](http://purl.obolibrary.org/obo/UBERON_0011595) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - -#### Added -- [jaw region](http://purl.obolibrary.org/obo/UBERON_0011595) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - -### jaw skeleton `http://purl.obolibrary.org/obo/UBERON_0001708` -#### Removed -- [jaw skeleton](http://purl.obolibrary.org/obo/UBERON_0001708) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - -#### Added -- [jaw skeleton](http://purl.obolibrary.org/obo/UBERON_0001708) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - -### joint of girdle `http://purl.obolibrary.org/obo/UBERON_0008114` -#### Removed -- [joint of girdle](http://purl.obolibrary.org/obo/UBERON_0008114) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [joint of girdle](http://purl.obolibrary.org/obo/UBERON_0008114) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### junk chamber `http://purl.obolibrary.org/obo/UBERON_0013189` -#### Removed -- [junk chamber](http://purl.obolibrary.org/obo/UBERON_0013189) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9753](http://purl.obolibrary.org/obo/NCBITaxon_9753) - -#### Added -- [junk chamber](http://purl.obolibrary.org/obo/UBERON_0013189) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9753](http://purl.obolibrary.org/obo/NCBITaxon_9753) - - -### keratinous tooth `http://purl.obolibrary.org/obo/UBERON_0010894` -#### Removed -- [keratinous tooth](http://purl.obolibrary.org/obo/UBERON_0010894) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [keratinous tooth](http://purl.obolibrary.org/obo/UBERON_0010894) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### kidney `http://purl.obolibrary.org/obo/UBERON_0002113` -#### Removed -- [kidney](http://purl.obolibrary.org/obo/UBERON_0002113) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [kidney](http://purl.obolibrary.org/obo/UBERON_0002113) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### kidney calyx `http://purl.obolibrary.org/obo/UBERON_0006517` - -#### Added -- [kidney calyx](http://purl.obolibrary.org/obo/UBERON_0006517) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [kidney calyx](http://purl.obolibrary.org/obo/UBERON_0006517) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - - -### labial cartilage `http://purl.obolibrary.org/obo/UBERON_0018333` -#### Removed -- [labial cartilage](http://purl.obolibrary.org/obo/UBERON_0018333) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7778](http://purl.obolibrary.org/obo/NCBITaxon_7778) - -#### Added -- [labial cartilage](http://purl.obolibrary.org/obo/UBERON_0018333) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7778](http://purl.obolibrary.org/obo/NCBITaxon_7778) - - -### lacrimal apparatus `http://purl.obolibrary.org/obo/UBERON_0001750` -#### Removed -- [lacrimal apparatus](http://purl.obolibrary.org/obo/UBERON_0001750) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - -#### Added -- [lacrimal apparatus](http://purl.obolibrary.org/obo/UBERON_0001750) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - -### lacrimal drainage system `http://purl.obolibrary.org/obo/UBERON_0001850` -#### Removed -- [lacrimal drainage system](http://purl.obolibrary.org/obo/UBERON_0001850) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:9780674021839" - -#### Added -- [lacrimal drainage system](http://purl.obolibrary.org/obo/UBERON_0001850) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:9780674021839" - - -### lamprey sucker `http://purl.obolibrary.org/obo/UBERON_0011303` -#### Removed -- [lamprey sucker](http://purl.obolibrary.org/obo/UBERON_0011303) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_117569](http://purl.obolibrary.org/obo/NCBITaxon_117569) - -#### Added -- [lamprey sucker](http://purl.obolibrary.org/obo/UBERON_0011303) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_117569](http://purl.obolibrary.org/obo/NCBITaxon_117569) - - -### large intestine `http://purl.obolibrary.org/obo/UBERON_0000059` -#### Removed -- [large intestine](http://purl.obolibrary.org/obo/UBERON_0000059) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [large intestine](http://purl.obolibrary.org/obo/UBERON_0000059) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### lateral line placode `http://purl.obolibrary.org/obo/UBERON_0009128` -#### Removed -- [lateral line placode](http://purl.obolibrary.org/obo/UBERON_0009128) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [lateral line placode](http://purl.obolibrary.org/obo/UBERON_0009128) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### lateral line system `http://purl.obolibrary.org/obo/UBERON_0002540` -#### Removed -- [lateral line system](http://purl.obolibrary.org/obo/UBERON_0002540) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [lateral line system](http://purl.obolibrary.org/obo/UBERON_0002540) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### lateral nasal gland `http://purl.obolibrary.org/obo/UBERON_0035077` -#### Removed -- [lateral nasal gland](http://purl.obolibrary.org/obo/UBERON_0035077) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9989](http://purl.obolibrary.org/obo/NCBITaxon_9989) - -#### Added -- [lateral nasal gland](http://purl.obolibrary.org/obo/UBERON_0035077) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9989](http://purl.obolibrary.org/obo/NCBITaxon_9989) - - -### lateral plate mesoderm `http://purl.obolibrary.org/obo/UBERON_0003081` -#### Removed -- [lateral plate mesoderm](http://purl.obolibrary.org/obo/UBERON_0003081) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [lateral plate mesoderm](http://purl.obolibrary.org/obo/UBERON_0003081) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### lateral spiriform nucleus `http://purl.obolibrary.org/obo/UBERON_0035591` -#### Removed -- [lateral spiriform nucleus](http://purl.obolibrary.org/obo/UBERON_0035591) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - -#### Added -- [lateral spiriform nucleus](http://purl.obolibrary.org/obo/UBERON_0035591) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - - -### lateral structure `http://purl.obolibrary.org/obo/UBERON_0015212` -#### Removed -- [lateral structure](http://purl.obolibrary.org/obo/UBERON_0015212) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [lateral structure](http://purl.obolibrary.org/obo/UBERON_0015212) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### lateral vaginal canal `http://purl.obolibrary.org/obo/UBERON_0013523` -#### Removed -- [lateral vaginal canal](http://purl.obolibrary.org/obo/UBERON_0013523) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9263](http://purl.obolibrary.org/obo/NCBITaxon_9263) - - [editor](http://www.geneontology.org/formats/oboInOwl#editor) "cjm" - -#### Added -- [lateral vaginal canal](http://purl.obolibrary.org/obo/UBERON_0013523) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9263](http://purl.obolibrary.org/obo/NCBITaxon_9263) - - [editor](http://www.geneontology.org/formats/oboInOwl#editor) "cjm" - - -### lateroobronchus `http://purl.obolibrary.org/obo/UBERON_0012088` -#### Removed -- [lateroobronchus](http://purl.obolibrary.org/obo/UBERON_0012088) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [lateroobronchus](http://purl.obolibrary.org/obo/UBERON_0012088) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### left distal ureter `http://purl.obolibrary.org/obo/UBERON_8600112` - -#### Added -- [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600112" - -- [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-7655-4833](https://orcid.org/0000-0001-7655-4833) - -- [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-4341-3265](https://orcid.org/0000-0002-4341-3265) - -- [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) [contributor](http://purl.org/dc/terms/contributor) [X](https://orcid.org/0000-0003-2804-127X) - -- [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A distal ureter that is part of the left ureter." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) [hasOBONamespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" - -- [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:15887" - -- [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) [date](http://purl.org/dc/terms/date) "2024-08-28T15:15:32Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - -- [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "left pelvic ureter" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "left lower ureter" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) - -- [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) [label](http://www.w3.org/2000/01/rdf-schema#label) "left distal ureter" - -- Class: [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) - -- [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) EquivalentTo [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [left ureter](http://purl.obolibrary.org/obo/UBERON_0001223)) - -- [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) SubClassOf [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) - -- [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [left ureter](http://purl.obolibrary.org/obo/UBERON_0001223) - -- [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) SubClassOf [RO_0002150](http://purl.obolibrary.org/obo/RO_0002150) some [left proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600114) - -- [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) SubClassOf [RO_0002150](http://purl.obolibrary.org/obo/RO_0002150) some [left intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600116) - - -### left intramural ureter `http://purl.obolibrary.org/obo/UBERON_8600116` - -#### Added -- [left intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600116) [hasOBONamespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" - -- [left intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600116) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) - -- [left intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600116) [label](http://www.w3.org/2000/01/rdf-schema#label) "left intramural ureter" - -- [left intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600116) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-7655-4833](https://orcid.org/0000-0001-7655-4833) - -- [left intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600116) [date](http://purl.org/dc/terms/date) "2024-08-28T16:10:50Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - -- [left intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600116) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600116" - -- [left intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600116) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An intramural ureter that is part of the left ureter." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [left intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600116) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "left intravesical ureter" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.53347/rID-23183" - -- [left intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600116) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-4341-3265](https://orcid.org/0000-0002-4341-3265) - -- [left intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600116) [contributor](http://purl.org/dc/terms/contributor) [X](https://orcid.org/0000-0003-2804-127X) - -- Class: [left intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600116) - -- [left intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600116) EquivalentTo [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [left ureter](http://purl.obolibrary.org/obo/UBERON_0001223)) - -- [left intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600116) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [left ureter](http://purl.obolibrary.org/obo/UBERON_0001223) - -- [left intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600116) SubClassOf [RO_0002150](http://purl.obolibrary.org/obo/RO_0002150) some [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) - -- [left intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600116) SubClassOf [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) - - -### left proximal ureter `http://purl.obolibrary.org/obo/UBERON_8600114` - -#### Added -- [left proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600114) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "left upper ureter" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [left proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600114) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:15885" - -- [left proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600114) [label](http://www.w3.org/2000/01/rdf-schema#label) "left proximal ureter" - -- [left proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600114) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A proximal ureter that is part of the left ureter." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [left proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600114) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-7655-4833](https://orcid.org/0000-0001-7655-4833) - -- [left proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600114) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-4341-3265](https://orcid.org/0000-0002-4341-3265) - -- [left proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600114) [hasOBONamespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" - -- [left proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600114) [date](http://purl.org/dc/terms/date) "2024-08-28T15:19:51Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - -- [left proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600114) [contributor](http://purl.org/dc/terms/contributor) [X](https://orcid.org/0000-0003-2804-127X) - -- [left proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600114) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "left abdominal ureter" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [left proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600114) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) - -- [left proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600114) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600114" - -- Class: [left proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600114) - -- [left proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600114) EquivalentTo [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [left ureter](http://purl.obolibrary.org/obo/UBERON_0001223)) - -- [left proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600114) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [left ureter](http://purl.obolibrary.org/obo/UBERON_0001223) - -- [left proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600114) SubClassOf [RO_0002150](http://purl.obolibrary.org/obo/RO_0002150) some [left distal ureter](http://purl.obolibrary.org/obo/UBERON_8600112) - -- [left proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600114) SubClassOf [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) - - -### ligament `http://purl.obolibrary.org/obo/UBERON_0000211` -#### Removed -- [ligament](http://purl.obolibrary.org/obo/UBERON_0000211) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [ligament](http://purl.obolibrary.org/obo/UBERON_0000211) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### limb `http://purl.obolibrary.org/obo/UBERON_0002101` -#### Removed -- [limb](http://purl.obolibrary.org/obo/UBERON_0002101) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [note](http://www.geneontology.org/formats/oboInOwl#note) "extends to stem tetrapods such as Eusthenopteron" - -#### Added -- [limb](http://purl.obolibrary.org/obo/UBERON_0002101) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [note](http://www.geneontology.org/formats/oboInOwl#note) "extends to stem tetrapods such as Eusthenopteron" - - -### limb bud `http://purl.obolibrary.org/obo/UBERON_0004347` -#### Removed -- [limb bud](http://purl.obolibrary.org/obo/UBERON_0004347) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - -#### Added -- [limb bud](http://purl.obolibrary.org/obo/UBERON_0004347) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - -### limen of insula `http://purl.obolibrary.org/obo/UBERON_0002724` -#### Removed -- [limen of insula](http://purl.obolibrary.org/obo/UBERON_0002724) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9443](http://purl.obolibrary.org/obo/NCBITaxon_9443) - -#### Added -- [limen of insula](http://purl.obolibrary.org/obo/UBERON_0002724) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9443](http://purl.obolibrary.org/obo/NCBITaxon_9443) - - -### liver `http://purl.obolibrary.org/obo/UBERON_0002107` -#### Removed -- [liver](http://purl.obolibrary.org/obo/UBERON_0002107) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [liver](http://purl.obolibrary.org/obo/UBERON_0002107) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### lophophore `http://purl.obolibrary.org/obo/UBERON_0013643` -#### Removed -- [lophophore](http://purl.obolibrary.org/obo/UBERON_0013643) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_1206795](http://purl.obolibrary.org/obo/NCBITaxon_1206795) - -#### Added -- [lophophore](http://purl.obolibrary.org/obo/UBERON_0013643) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_1206795](http://purl.obolibrary.org/obo/NCBITaxon_1206795) - - -### lower leg skin `http://purl.obolibrary.org/obo/UBERON_0004264` - -#### Added -- [lower leg skin](http://purl.obolibrary.org/obo/UBERON_0004264) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "hindlimb zeugopod skin" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://orcid.org/0000-0002-0819-0473" - - -### lumbar vertebra 1 `http://purl.obolibrary.org/obo/UBERON_0004617` -#### Removed -- [lumbar vertebra 1](http://purl.obolibrary.org/obo/UBERON_0004617) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [lumbar vertebra 1](http://purl.obolibrary.org/obo/UBERON_0004617) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### lumbar vertebra 2 `http://purl.obolibrary.org/obo/UBERON_0004618` -#### Removed -- [lumbar vertebra 2](http://purl.obolibrary.org/obo/UBERON_0004618) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [lumbar vertebra 2](http://purl.obolibrary.org/obo/UBERON_0004618) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### lumbar vertebra 3 `http://purl.obolibrary.org/obo/UBERON_0004619` -#### Removed -- [lumbar vertebra 3](http://purl.obolibrary.org/obo/UBERON_0004619) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [lumbar vertebra 3](http://purl.obolibrary.org/obo/UBERON_0004619) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### luminal layer of epithelium `http://purl.obolibrary.org/obo/UBERON_0011945` - -#### Added -- [luminal layer of epithelium](http://purl.obolibrary.org/obo/UBERON_0011945) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [luminal layer of epithelium](http://purl.obolibrary.org/obo/UBERON_0011945) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - - -### lung `http://purl.obolibrary.org/obo/UBERON_0002048` -#### Removed -- [lung](http://purl.obolibrary.org/obo/UBERON_0002048) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - -#### Added -- [lung](http://purl.obolibrary.org/obo/UBERON_0002048) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - -### lunge feeding organ `http://purl.obolibrary.org/obo/UBERON_0016621` -#### Removed -- [lunge feeding organ](http://purl.obolibrary.org/obo/UBERON_0016621) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9765](http://purl.obolibrary.org/obo/NCBITaxon_9765) - -#### Added -- [lunge feeding organ](http://purl.obolibrary.org/obo/UBERON_0016621) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9765](http://purl.obolibrary.org/obo/NCBITaxon_9765) - - -### lymph heart `http://purl.obolibrary.org/obo/UBERON_0015202` -#### Removed -- [lymph heart](http://purl.obolibrary.org/obo/UBERON_0015202) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) - -#### Added -- [lymph heart](http://purl.obolibrary.org/obo/UBERON_0015202) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) - - -### lymph sac of lymph heart `http://purl.obolibrary.org/obo/UBERON_0034950` -#### Removed -- [lymph sac of lymph heart](http://purl.obolibrary.org/obo/UBERON_0034950) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8342](http://purl.obolibrary.org/obo/NCBITaxon_8342) - -#### Added -- [lymph sac of lymph heart](http://purl.obolibrary.org/obo/UBERON_0034950) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8342](http://purl.obolibrary.org/obo/NCBITaxon_8342) - - -### lymphocyte domain `http://purl.obolibrary.org/obo/UBERON_0010394` -#### Removed -- [lymphocyte domain](http://purl.obolibrary.org/obo/UBERON_0010394) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [lymphocyte domain](http://purl.obolibrary.org/obo/UBERON_0010394) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### lymphoid system `http://purl.obolibrary.org/obo/UBERON_0002465` -#### Removed -- [lymphoid system](http://purl.obolibrary.org/obo/UBERON_0002465) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [lymphoid system](http://purl.obolibrary.org/obo/UBERON_0002465) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### lymphoid tissue `http://purl.obolibrary.org/obo/UBERON_0001744` -#### Removed -- [lymphoid tissue](http://purl.obolibrary.org/obo/UBERON_0001744) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "NCBIBook:NBK27108" - -#### Added -- [lymphoid tissue](http://purl.obolibrary.org/obo/UBERON_0001744) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "NCBIBook:NBK27108" - - -### macula `http://purl.obolibrary.org/obo/UBERON_0000054` - -#### Added -- [macula](http://purl.obolibrary.org/obo/UBERON_0000054) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [macula](http://purl.obolibrary.org/obo/UBERON_0000054) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - - -### magnocellular superficial pretectal nucleus `http://purl.obolibrary.org/obo/UBERON_0035563` -#### Removed -- [magnocellular superficial pretectal nucleus](http://purl.obolibrary.org/obo/UBERON_0035563) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32443](http://purl.obolibrary.org/obo/NCBITaxon_32443) - -#### Added -- [magnocellular superficial pretectal nucleus](http://purl.obolibrary.org/obo/UBERON_0035563) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32443](http://purl.obolibrary.org/obo/NCBITaxon_32443) - - -### main body axis `http://purl.obolibrary.org/obo/UBERON_0013701` -#### Removed -- [main body axis](http://purl.obolibrary.org/obo/UBERON_0013701) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [main body axis](http://purl.obolibrary.org/obo/UBERON_0013701) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### major calyx `http://purl.obolibrary.org/obo/UBERON_0001226` - -#### Added -- [major calyx](http://purl.obolibrary.org/obo/UBERON_0001226) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [major calyx](http://purl.obolibrary.org/obo/UBERON_0001226) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - - -### malleus bone `http://purl.obolibrary.org/obo/UBERON_0001689` -#### Removed -- [malleus bone](http://purl.obolibrary.org/obo/UBERON_0001689) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [malleus bone](http://purl.obolibrary.org/obo/UBERON_0001689) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### mammalian cervical vertebra 3 `http://purl.obolibrary.org/obo/UBERON_0004612` -#### Removed -- [mammalian cervical vertebra 3](http://purl.obolibrary.org/obo/UBERON_0004612) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [mammalian cervical vertebra 3](http://purl.obolibrary.org/obo/UBERON_0004612) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### mammalian cervical vertebra 4 `http://purl.obolibrary.org/obo/UBERON_0004613` -#### Removed -- [mammalian cervical vertebra 4](http://purl.obolibrary.org/obo/UBERON_0004613) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [mammalian cervical vertebra 4](http://purl.obolibrary.org/obo/UBERON_0004613) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### mammalian cervical vertebra 5 `http://purl.obolibrary.org/obo/UBERON_0004614` -#### Removed -- [mammalian cervical vertebra 5](http://purl.obolibrary.org/obo/UBERON_0004614) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [mammalian cervical vertebra 5](http://purl.obolibrary.org/obo/UBERON_0004614) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### mammalian cervical vertebra 6 `http://purl.obolibrary.org/obo/UBERON_0004615` -#### Removed -- [mammalian cervical vertebra 6](http://purl.obolibrary.org/obo/UBERON_0004615) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [mammalian cervical vertebra 6](http://purl.obolibrary.org/obo/UBERON_0004615) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### mammalian cervical vertebra 7 `http://purl.obolibrary.org/obo/UBERON_0004616` -#### Removed -- [mammalian cervical vertebra 7](http://purl.obolibrary.org/obo/UBERON_0004616) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [mammalian cervical vertebra 7](http://purl.obolibrary.org/obo/UBERON_0004616) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### mammalian vulva `http://purl.obolibrary.org/obo/UBERON_0000997` -#### Removed -- [mammalian vulva](http://purl.obolibrary.org/obo/UBERON_0000997) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [mammalian vulva](http://purl.obolibrary.org/obo/UBERON_0000997) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### mammary gland `http://purl.obolibrary.org/obo/UBERON_0001911` -#### Removed -- [mammary gland](http://purl.obolibrary.org/obo/UBERON_0001911) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [mammary gland](http://purl.obolibrary.org/obo/UBERON_0001911) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### mantle `http://purl.obolibrary.org/obo/UBERON_0006575` -#### Removed -- [mantle](http://purl.obolibrary.org/obo/UBERON_0006575) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - -#### Added -- [mantle](http://purl.obolibrary.org/obo/UBERON_0006575) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - - -### manual major digit (Aves) `http://purl.obolibrary.org/obo/UBERON_0012261` -#### Removed -- [manual major digit (Aves)](http://purl.obolibrary.org/obo/UBERON_0012261) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PhenotypeRCN:Oct2012" - -#### Added -- [manual major digit (Aves)](http://purl.obolibrary.org/obo/UBERON_0012261) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PhenotypeRCN:Oct2012" - - -### manual minor digit (Aves) `http://purl.obolibrary.org/obo/UBERON_0012262` -#### Removed -- [manual minor digit (Aves)](http://purl.obolibrary.org/obo/UBERON_0012262) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PhenotypeRCN:Oct2012" - -#### Added -- [manual minor digit (Aves)](http://purl.obolibrary.org/obo/UBERON_0012262) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PhenotypeRCN:Oct2012" - - -### marsupium `http://purl.obolibrary.org/obo/UBERON_0009118` -#### Removed -- [marsupium](http://purl.obolibrary.org/obo/UBERON_0009118) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9263](http://purl.obolibrary.org/obo/NCBITaxon_9263) - -#### Added -- [marsupium](http://purl.obolibrary.org/obo/UBERON_0009118) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9263](http://purl.obolibrary.org/obo/NCBITaxon_9263) - - -### mating plug `http://purl.obolibrary.org/obo/UBERON_0010148` -#### Removed -- [mating plug](http://purl.obolibrary.org/obo/UBERON_0010148) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [mating plug](http://purl.obolibrary.org/obo/UBERON_0010148) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### maxillary recess `http://purl.obolibrary.org/obo/UBERON_0018652` -#### Removed -- [maxillary recess](http://purl.obolibrary.org/obo/UBERON_0018652) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33554](http://purl.obolibrary.org/obo/NCBITaxon_33554) - -#### Added -- [maxillary recess](http://purl.obolibrary.org/obo/UBERON_0018652) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33554](http://purl.obolibrary.org/obo/NCBITaxon_33554) - - -### meconium `http://purl.obolibrary.org/obo/UBERON_0007109` -#### Removed -- [meconium](http://purl.obolibrary.org/obo/UBERON_0007109) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [meconium](http://purl.obolibrary.org/obo/UBERON_0007109) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### medial pretectal nucleus `http://purl.obolibrary.org/obo/UBERON_0034910` -#### Removed -- [medial pretectal nucleus](http://purl.obolibrary.org/obo/UBERON_0034910) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - -#### Added -- [medial pretectal nucleus](http://purl.obolibrary.org/obo/UBERON_0034910) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - - -### medial spiriform nucleus `http://purl.obolibrary.org/obo/UBERON_0035592` -#### Removed -- [medial spiriform nucleus](http://purl.obolibrary.org/obo/UBERON_0035592) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - -#### Added -- [medial spiriform nucleus](http://purl.obolibrary.org/obo/UBERON_0035592) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - - -### medial superior olivary nucleus `http://purl.obolibrary.org/obo/UBERON_0002782` -#### Removed -- [medial superior olivary nucleus](http://purl.obolibrary.org/obo/UBERON_0002782) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "NIFSTD" - -#### Added -- [medial superior olivary nucleus](http://purl.obolibrary.org/obo/UBERON_0002782) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "NIFSTD" - - -### median eminence of neurohypophysis `http://purl.obolibrary.org/obo/UBERON_0002197` -#### Removed -- [median eminence of neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0002197) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - -#### Added -- [median eminence of neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0002197) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - - -### median eye `http://purl.obolibrary.org/obo/UBERON_0003211` -#### Removed -- [median eye](http://purl.obolibrary.org/obo/UBERON_0003211) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - -#### Added -- [median eye](http://purl.obolibrary.org/obo/UBERON_0003211) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - -### median vaginal canal `http://purl.obolibrary.org/obo/UBERON_0013524` -#### Removed -- [median vaginal canal](http://purl.obolibrary.org/obo/UBERON_0013524) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9263](http://purl.obolibrary.org/obo/NCBITaxon_9263) - - [editor](http://www.geneontology.org/formats/oboInOwl#editor) "cjm" - -#### Added -- [median vaginal canal](http://purl.obolibrary.org/obo/UBERON_0013524) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9263](http://purl.obolibrary.org/obo/NCBITaxon_9263) - - [editor](http://www.geneontology.org/formats/oboInOwl#editor) "cjm" - - -### medulla of organ `http://purl.obolibrary.org/obo/UBERON_0000958` -#### Removed -- [medulla of organ](http://purl.obolibrary.org/obo/UBERON_0000958) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [medulla of organ](http://purl.obolibrary.org/obo/UBERON_0000958) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### melon organ `http://purl.obolibrary.org/obo/UBERON_0008960` -#### Removed -- [melon organ](http://purl.obolibrary.org/obo/UBERON_0008960) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9721](http://purl.obolibrary.org/obo/NCBITaxon_9721) - -#### Added -- [melon organ](http://purl.obolibrary.org/obo/UBERON_0008960) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9721](http://purl.obolibrary.org/obo/NCBITaxon_9721) - - -### mesencephalic nucleus of trigeminal nerve `http://purl.obolibrary.org/obo/UBERON_0001718` -#### Removed -- [mesencephalic nucleus of trigeminal nerve](http://purl.obolibrary.org/obo/UBERON_0001718) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:978-0-387-09845-6" - -#### Added -- [mesencephalic nucleus of trigeminal nerve](http://purl.obolibrary.org/obo/UBERON_0001718) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:978-0-387-09845-6" - - -### mesenchyme `http://purl.obolibrary.org/obo/UBERON_0003104` -#### Removed -- [mesenchyme](http://purl.obolibrary.org/obo/UBERON_0003104) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [mesenchyme](http://purl.obolibrary.org/obo/UBERON_0003104) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### mesentery `http://purl.obolibrary.org/obo/UBERON_0002095` -#### Removed -- [mesentery](http://purl.obolibrary.org/obo/UBERON_0002095) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [mesentery](http://purl.obolibrary.org/obo/UBERON_0002095) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### mesobronchus `http://purl.obolibrary.org/obo/UBERON_0009071` -#### Removed -- [mesobronchus](http://purl.obolibrary.org/obo/UBERON_0009071) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [mesobronchus](http://purl.obolibrary.org/obo/UBERON_0009071) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### metacercaria `http://purl.obolibrary.org/obo/UBERON_0018385` -#### Removed -- [metacercaria](http://purl.obolibrary.org/obo/UBERON_0018385) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6178](http://purl.obolibrary.org/obo/NCBITaxon_6178) - -#### Added -- [metacercaria](http://purl.obolibrary.org/obo/UBERON_0018385) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6178](http://purl.obolibrary.org/obo/NCBITaxon_6178) - - -### metacestode `http://purl.obolibrary.org/obo/UBERON_0018379` -#### Removed -- [metacestode](http://purl.obolibrary.org/obo/UBERON_0018379) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6211](http://purl.obolibrary.org/obo/NCBITaxon_6211) - -#### Added -- [metacestode](http://purl.obolibrary.org/obo/UBERON_0018379) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6211](http://purl.obolibrary.org/obo/NCBITaxon_6211) - - -### metapterygial axis `http://purl.obolibrary.org/obo/UBERON_0012079` -#### Removed -- [metapterygial axis](http://purl.obolibrary.org/obo/UBERON_0012079) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [metapterygial axis](http://purl.obolibrary.org/obo/UBERON_0012079) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### midface `http://purl.obolibrary.org/obo/UBERON_0004089` -#### Removed -- [midface](http://purl.obolibrary.org/obo/UBERON_0004089) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_89593](http://purl.obolibrary.org/obo/NCBITaxon_89593) - -#### Added -- [midface](http://purl.obolibrary.org/obo/UBERON_0004089) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_89593](http://purl.obolibrary.org/obo/NCBITaxon_89593) - - -### midgut loop `http://purl.obolibrary.org/obo/UBERON_0011698` -#### Removed -- [midgut loop](http://purl.obolibrary.org/obo/UBERON_0011698) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [midgut loop](http://purl.obolibrary.org/obo/UBERON_0011698) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### midline crest `http://purl.obolibrary.org/obo/UBERON_1000009` -#### Removed -- [midline crest](http://purl.obolibrary.org/obo/UBERON_1000009) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [midline crest](http://purl.obolibrary.org/obo/UBERON_1000009) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### minor calyx `http://purl.obolibrary.org/obo/UBERON_0001227` - -#### Added -- [minor calyx](http://purl.obolibrary.org/obo/UBERON_0001227) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [minor calyx](http://purl.obolibrary.org/obo/UBERON_0001227) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - - -### mollusc hepatopancreas `http://purl.obolibrary.org/obo/UBERON_0010265` -#### Removed -- [mollusc hepatopancreas](http://purl.obolibrary.org/obo/UBERON_0010265) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - -#### Added -- [mollusc hepatopancreas](http://purl.obolibrary.org/obo/UBERON_0010265) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - - -### mollusc shell `http://purl.obolibrary.org/obo/UBERON_0008270` -#### Removed -- [mollusc shell](http://purl.obolibrary.org/obo/UBERON_0008270) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - -#### Added -- [mollusc shell](http://purl.obolibrary.org/obo/UBERON_0008270) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - - -### mollusc venom `http://purl.obolibrary.org/obo/UBERON_0008274` -#### Removed -- [mollusc venom](http://purl.obolibrary.org/obo/UBERON_0008274) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - -#### Added -- [mollusc venom](http://purl.obolibrary.org/obo/UBERON_0008274) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - - -### monkey lips dorsal bursa complex `http://purl.obolibrary.org/obo/UBERON_0013188` -#### Removed -- [monkey lips dorsal bursa complex](http://purl.obolibrary.org/obo/UBERON_0013188) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9721](http://purl.obolibrary.org/obo/NCBITaxon_9721) - -#### Added -- [monkey lips dorsal bursa complex](http://purl.obolibrary.org/obo/UBERON_0013188) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9721](http://purl.obolibrary.org/obo/NCBITaxon_9721) - - -### monotreme bill `http://purl.obolibrary.org/obo/UBERON_0018133` -#### Removed -- [monotreme bill](http://purl.obolibrary.org/obo/UBERON_0018133) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9255](http://purl.obolibrary.org/obo/NCBITaxon_9255) - -#### Added -- [monotreme bill](http://purl.obolibrary.org/obo/UBERON_0018133) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9255](http://purl.obolibrary.org/obo/NCBITaxon_9255) - - -### mormyromast organ `http://purl.obolibrary.org/obo/UBERON_0017629` -#### Removed -- [mormyromast organ](http://purl.obolibrary.org/obo/UBERON_0017629) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_41712](http://purl.obolibrary.org/obo/NCBITaxon_41712) - -#### Added -- [mormyromast organ](http://purl.obolibrary.org/obo/UBERON_0017629) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_41712](http://purl.obolibrary.org/obo/NCBITaxon_41712) - - -### mouth `http://purl.obolibrary.org/obo/UBERON_0000165` -#### Removed -- [mouth](http://purl.obolibrary.org/obo/UBERON_0000165) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [mouth](http://purl.obolibrary.org/obo/UBERON_0000165) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### mucosa `http://purl.obolibrary.org/obo/UBERON_0000344` -#### Removed -- [mucosa](http://purl.obolibrary.org/obo/UBERON_0000344) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [mucosa](http://purl.obolibrary.org/obo/UBERON_0000344) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### muscle structure `http://purl.obolibrary.org/obo/UBERON_0005090` -#### Removed -- [muscle structure](http://purl.obolibrary.org/obo/UBERON_0005090) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [muscle structure](http://purl.obolibrary.org/obo/UBERON_0005090) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### muscle tissue `http://purl.obolibrary.org/obo/UBERON_0002385` -#### Removed -- [muscle tissue](http://purl.obolibrary.org/obo/UBERON_0002385) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [muscle tissue](http://purl.obolibrary.org/obo/UBERON_0002385) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### muscular coat `http://purl.obolibrary.org/obo/UBERON_0006660` -#### Removed -- [muscular coat](http://purl.obolibrary.org/obo/UBERON_0006660) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [muscular coat](http://purl.obolibrary.org/obo/UBERON_0006660) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### muscularis orbicularis `http://purl.obolibrary.org/obo/UBERON_0013497` -#### Removed -- [muscularis orbicularis](http://purl.obolibrary.org/obo/UBERON_0013497) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [muscularis orbicularis](http://purl.obolibrary.org/obo/UBERON_0013497) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### musculature of body `http://purl.obolibrary.org/obo/UBERON_0000383` -#### Removed -- [musculature of body](http://purl.obolibrary.org/obo/UBERON_0000383) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [musculature of body](http://purl.obolibrary.org/obo/UBERON_0000383) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### mushroom body `http://purl.obolibrary.org/obo/UBERON_0001058` -#### Removed -- [mushroom body](http://purl.obolibrary.org/obo/UBERON_0001058) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33317](http://purl.obolibrary.org/obo/NCBITaxon_33317) - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "annelids and arthropods" - -#### Added -- [mushroom body](http://purl.obolibrary.org/obo/UBERON_0001058) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33317](http://purl.obolibrary.org/obo/NCBITaxon_33317) - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "annelids and arthropods" - - -### myelin `http://purl.obolibrary.org/obo/UBERON_0000345` -#### Removed -- [myelin](http://purl.obolibrary.org/obo/UBERON_0000345) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [myelin](http://purl.obolibrary.org/obo/UBERON_0000345) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### myelinated nerve fiber `http://purl.obolibrary.org/obo/UBERON_0006135` -#### Removed -- [myelinated nerve fiber](http://purl.obolibrary.org/obo/UBERON_0006135) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [myelinated nerve fiber](http://purl.obolibrary.org/obo/UBERON_0006135) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### mylohyoid raphe `http://purl.obolibrary.org/obo/UBERON_0011350` -#### Removed -- [mylohyoid raphe](http://purl.obolibrary.org/obo/UBERON_0011350) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [mylohyoid raphe](http://purl.obolibrary.org/obo/UBERON_0011350) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### nacre `http://purl.obolibrary.org/obo/UBERON_0008269` -#### Removed -- [nacre](http://purl.obolibrary.org/obo/UBERON_0008269) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - -#### Added -- [nacre](http://purl.obolibrary.org/obo/UBERON_0008269) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - - -### naris `http://purl.obolibrary.org/obo/UBERON_0000003` -#### Removed -- [naris](http://purl.obolibrary.org/obo/UBERON_0000003) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [naris](http://purl.obolibrary.org/obo/UBERON_0000003) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### narwhal tusk `http://purl.obolibrary.org/obo/UBERON_0015852` -#### Removed -- [narwhal tusk](http://purl.obolibrary.org/obo/UBERON_0015852) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40151](http://purl.obolibrary.org/obo/NCBITaxon_40151) - -#### Added -- [narwhal tusk](http://purl.obolibrary.org/obo/UBERON_0015852) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40151](http://purl.obolibrary.org/obo/NCBITaxon_40151) - - -### nasal air sac `http://purl.obolibrary.org/obo/UBERON_0013175` -#### Removed -- [nasal air sac](http://purl.obolibrary.org/obo/UBERON_0013175) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9721](http://purl.obolibrary.org/obo/NCBITaxon_9721) - -#### Added -- [nasal air sac](http://purl.obolibrary.org/obo/UBERON_0013175) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9721](http://purl.obolibrary.org/obo/NCBITaxon_9721) - - -### nasal tentacle `http://purl.obolibrary.org/obo/UBERON_0013206` -#### Removed -- [nasal tentacle](http://purl.obolibrary.org/obo/UBERON_0013206) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9373](http://purl.obolibrary.org/obo/NCBITaxon_9373) - -#### Added -- [nasal tentacle](http://purl.obolibrary.org/obo/UBERON_0013206) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9373](http://purl.obolibrary.org/obo/NCBITaxon_9373) - - -### nasal turbinal `http://purl.obolibrary.org/obo/UBERON_0035612` -#### Removed -- [nasal turbinal](http://purl.obolibrary.org/obo/UBERON_0035612) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - -#### Added -- [nasal turbinal](http://purl.obolibrary.org/obo/UBERON_0035612) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - -### nauplius eye `http://purl.obolibrary.org/obo/UBERON_0015170` -#### Removed -- [nauplius eye](http://purl.obolibrary.org/obo/UBERON_0015170) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6657](http://purl.obolibrary.org/obo/NCBITaxon_6657) - -#### Added -- [nauplius eye](http://purl.obolibrary.org/obo/UBERON_0015170) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6657](http://purl.obolibrary.org/obo/NCBITaxon_6657) - - -### navicular bursa `http://purl.obolibrary.org/obo/UBERON_0012334` -#### Removed -- [navicular bursa](http://purl.obolibrary.org/obo/UBERON_0012334) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9788](http://purl.obolibrary.org/obo/NCBITaxon_9788) - -#### Added -- [navicular bursa](http://purl.obolibrary.org/obo/UBERON_0012334) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9788](http://purl.obolibrary.org/obo/NCBITaxon_9788) - - -### neck of organ `http://purl.obolibrary.org/obo/UBERON_0001560` -#### Removed -- [neck of organ](http://purl.obolibrary.org/obo/UBERON_0001560) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [neck of organ](http://purl.obolibrary.org/obo/UBERON_0001560) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### nematode larval stage `http://purl.obolibrary.org/obo/UBERON_0004729` -#### Removed -- [nematode larval stage](http://purl.obolibrary.org/obo/UBERON_0004729) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6231](http://purl.obolibrary.org/obo/NCBITaxon_6231) - -#### Added -- [nematode larval stage](http://purl.obolibrary.org/obo/UBERON_0004729) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6231](http://purl.obolibrary.org/obo/NCBITaxon_6231) - - -### nematode pharynx `http://purl.obolibrary.org/obo/UBERON_0015232` -#### Removed -- [nematode pharynx](http://purl.obolibrary.org/obo/UBERON_0015232) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6231](http://purl.obolibrary.org/obo/NCBITaxon_6231) - -#### Added -- [nematode pharynx](http://purl.obolibrary.org/obo/UBERON_0015232) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6231](http://purl.obolibrary.org/obo/NCBITaxon_6231) - - -### neocortex `http://purl.obolibrary.org/obo/UBERON_0001950` -#### Removed -- [neocortex](http://purl.obolibrary.org/obo/UBERON_0001950) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [neocortex](http://purl.obolibrary.org/obo/UBERON_0001950) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### nervous system `http://purl.obolibrary.org/obo/UBERON_0001016` -#### Removed -- [nervous system](http://purl.obolibrary.org/obo/UBERON_0001016) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [nervous system](http://purl.obolibrary.org/obo/UBERON_0001016) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [nervous system](http://purl.obolibrary.org/obo/UBERON_0001016) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [nervous system](http://purl.obolibrary.org/obo/UBERON_0001016) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### neural crest `http://purl.obolibrary.org/obo/UBERON_0002342` -#### Removed -- [neural crest](http://purl.obolibrary.org/obo/UBERON_0002342) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_89593](http://purl.obolibrary.org/obo/NCBITaxon_89593) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0073040584" - - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "Hall and others restrict NC to vertebrates but we opt for a less restrictive constraint to avoid inconsistencies when areas such as P1 area of pallium in hagfishes inherit cell lineage from telecephalon-contributing NC cells" - -#### Added -- [neural crest](http://purl.obolibrary.org/obo/UBERON_0002342) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_89593](http://purl.obolibrary.org/obo/NCBITaxon_89593) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0073040584" - - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "Hall and others restrict NC to vertebrates but we opt for a less restrictive constraint to avoid inconsistencies when areas such as P1 area of pallium in hagfishes inherit cell lineage from telecephalon-contributing NC cells" - - -### neural nucleus `http://purl.obolibrary.org/obo/UBERON_0000125` -#### Removed -- [neural nucleus](http://purl.obolibrary.org/obo/UBERON_0000125) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "we limit this structure by definition to chordate and vertebrate nervous systems" - -#### Added -- [neural nucleus](http://purl.obolibrary.org/obo/UBERON_0000125) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "we limit this structure by definition to chordate and vertebrate nervous systems" - - -### neural plate `http://purl.obolibrary.org/obo/UBERON_0003075` -#### Removed -- [neural plate](http://purl.obolibrary.org/obo/UBERON_0003075) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "GOTAX:0000352" - -#### Added -- [neural plate](http://purl.obolibrary.org/obo/UBERON_0003075) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "GOTAX:0000352" - - -### neurohypophyseal duct `http://purl.obolibrary.org/obo/UBERON_0009718` -#### Removed -- [neurohypophyseal duct](http://purl.obolibrary.org/obo/UBERON_0009718) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) - -#### Added -- [neurohypophyseal duct](http://purl.obolibrary.org/obo/UBERON_0009718) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) - - -### neurohypophysis `http://purl.obolibrary.org/obo/UBERON_0002198` -#### Removed -- [neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0002198) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:19084529" - -#### Added -- [neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0002198) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:19084529" - - -### neurula stage `http://purl.obolibrary.org/obo/UBERON_0000110` -#### Removed -- [neurula stage](http://purl.obolibrary.org/obo/UBERON_0000110) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [neurula stage](http://purl.obolibrary.org/obo/UBERON_0000110) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### nidopallium `http://purl.obolibrary.org/obo/UBERON_0007334` -#### Removed -- [nidopallium](http://purl.obolibrary.org/obo/UBERON_0007334) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [nidopallium](http://purl.obolibrary.org/obo/UBERON_0007334) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### nipple `http://purl.obolibrary.org/obo/UBERON_0002030` -#### Removed -- [nipple](http://purl.obolibrary.org/obo/UBERON_0002030) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32525](http://purl.obolibrary.org/obo/NCBITaxon_32525) - -#### Added -- [nipple](http://purl.obolibrary.org/obo/UBERON_0002030) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32525](http://purl.obolibrary.org/obo/NCBITaxon_32525) - - -### nose `http://purl.obolibrary.org/obo/UBERON_0000004` -#### Removed -- [nose](http://purl.obolibrary.org/obo/UBERON_0000004) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [nose](http://purl.obolibrary.org/obo/UBERON_0000004) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### notochord `http://purl.obolibrary.org/obo/UBERON_0002328` -#### Removed -- [notochord](http://purl.obolibrary.org/obo/UBERON_0002328) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "http://tolweb.org/Chordata/2499" - -#### Added -- [notochord](http://purl.obolibrary.org/obo/UBERON_0002328) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "http://tolweb.org/Chordata/2499" - - -### notochordal process `http://purl.obolibrary.org/obo/UBERON_0006268` -#### Removed -- [notochordal process](http://purl.obolibrary.org/obo/UBERON_0006268) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [notochordal process](http://purl.obolibrary.org/obo/UBERON_0006268) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### nucleus H of ventral tegmentum `http://purl.obolibrary.org/obo/UBERON_0014645` -#### Removed -- [nucleus H of ventral tegmentum](http://purl.obolibrary.org/obo/UBERON_0014645) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_118040](http://purl.obolibrary.org/obo/NCBITaxon_118040) - -#### Added -- [nucleus H of ventral tegmentum](http://purl.obolibrary.org/obo/UBERON_0014645) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_118040](http://purl.obolibrary.org/obo/NCBITaxon_118040) - - -### nucleus K of ventral tegmentum `http://purl.obolibrary.org/obo/UBERON_0014646` -#### Removed -- [nucleus K of ventral tegmentum](http://purl.obolibrary.org/obo/UBERON_0014646) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_117893](http://purl.obolibrary.org/obo/NCBITaxon_117893) - -#### Added -- [nucleus K of ventral tegmentum](http://purl.obolibrary.org/obo/UBERON_0014646) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_117893](http://purl.obolibrary.org/obo/NCBITaxon_117893) - - -### nucleus circularis of pretectum `http://purl.obolibrary.org/obo/UBERON_0035593` -#### Removed -- [nucleus circularis of pretectum](http://purl.obolibrary.org/obo/UBERON_0035593) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - -#### Added -- [nucleus circularis of pretectum](http://purl.obolibrary.org/obo/UBERON_0035593) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - - -### nucleus geniculatus of pretectum `http://purl.obolibrary.org/obo/UBERON_0035580` -#### Removed -- [nucleus geniculatus of pretectum](http://purl.obolibrary.org/obo/UBERON_0035580) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8457](http://purl.obolibrary.org/obo/NCBITaxon_8457) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - -#### Added -- [nucleus geniculatus of pretectum](http://purl.obolibrary.org/obo/UBERON_0035580) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8457](http://purl.obolibrary.org/obo/NCBITaxon_8457) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - - -### nucleus isthmo-opticus `http://purl.obolibrary.org/obo/UBERON_0007351` -#### Removed -- [nucleus isthmo-opticus](http://purl.obolibrary.org/obo/UBERON_0007351) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [nucleus isthmo-opticus](http://purl.obolibrary.org/obo/UBERON_0007351) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### nucleus lateralis valvulae `http://purl.obolibrary.org/obo/UBERON_2000551` -#### Removed -- [nucleus lateralis valvulae](http://purl.obolibrary.org/obo/UBERON_2000551) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32443](http://purl.obolibrary.org/obo/NCBITaxon_32443) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:2040726" - - - [contributor](http://www.geneontology.org/formats/oboInOwl#contributor) "michaelerice" - -#### Added -- [nucleus lateralis valvulae](http://purl.obolibrary.org/obo/UBERON_2000551) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32443](http://purl.obolibrary.org/obo/NCBITaxon_32443) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:2040726" - - - [contributor](http://www.geneontology.org/formats/oboInOwl#contributor) "michaelerice" - - -### nucleus lentiformis mesencephali (Aves) `http://purl.obolibrary.org/obo/UBERON_0035586` -#### Removed -- [nucleus lentiformis mesencephali (Aves)](http://purl.obolibrary.org/obo/UBERON_0035586) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [nucleus lentiformis mesencephali (Aves)](http://purl.obolibrary.org/obo/UBERON_0035586) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### nucleus lentiformis of pretectum `http://purl.obolibrary.org/obo/UBERON_0035581` -#### Removed -- [nucleus lentiformis of pretectum](http://purl.obolibrary.org/obo/UBERON_0035581) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8457](http://purl.obolibrary.org/obo/NCBITaxon_8457) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - -#### Added -- [nucleus lentiformis of pretectum](http://purl.obolibrary.org/obo/UBERON_0035581) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8457](http://purl.obolibrary.org/obo/NCBITaxon_8457) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - - -### nucleus lentiformis thalamus `http://purl.obolibrary.org/obo/UBERON_0035583` -#### Removed -- [nucleus lentiformis thalamus](http://purl.obolibrary.org/obo/UBERON_0035583) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8457](http://purl.obolibrary.org/obo/NCBITaxon_8457) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - -#### Added -- [nucleus lentiformis thalamus](http://purl.obolibrary.org/obo/UBERON_0035583) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8457](http://purl.obolibrary.org/obo/NCBITaxon_8457) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - - -### nucleus of optic tract `http://purl.obolibrary.org/obo/UBERON_0002996` -#### Removed -- [nucleus of optic tract](http://purl.obolibrary.org/obo/UBERON_0002996) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - -#### Added -- [nucleus of optic tract](http://purl.obolibrary.org/obo/UBERON_0002996) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - - -### nucleus posteriodorsalis of pretectum `http://purl.obolibrary.org/obo/UBERON_0035582` -#### Removed -- [nucleus posteriodorsalis of pretectum](http://purl.obolibrary.org/obo/UBERON_0035582) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8457](http://purl.obolibrary.org/obo/NCBITaxon_8457) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - -#### Added -- [nucleus posteriodorsalis of pretectum](http://purl.obolibrary.org/obo/UBERON_0035582) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8457](http://purl.obolibrary.org/obo/NCBITaxon_8457) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - - -### nucleus pretectalis diffusus `http://purl.obolibrary.org/obo/UBERON_0035587` -#### Removed -- [nucleus pretectalis diffusus](http://purl.obolibrary.org/obo/UBERON_0035587) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - -#### Added -- [nucleus pretectalis diffusus](http://purl.obolibrary.org/obo/UBERON_0035587) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - - -### nuptial pad `http://purl.obolibrary.org/obo/UBERON_0012243` -#### Removed -- [nuptial pad](http://purl.obolibrary.org/obo/UBERON_0012243) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8292](http://purl.obolibrary.org/obo/NCBITaxon_8292) - -#### Added -- [nuptial pad](http://purl.obolibrary.org/obo/UBERON_0012243) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8292](http://purl.obolibrary.org/obo/NCBITaxon_8292) - - -### nursing stage `http://purl.obolibrary.org/obo/UBERON_0018685` -#### Removed -- [nursing stage](http://purl.obolibrary.org/obo/UBERON_0018685) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [nursing stage](http://purl.obolibrary.org/obo/UBERON_0018685) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### nymph stage `http://purl.obolibrary.org/obo/UBERON_0014405` -#### Removed -- [nymph stage](http://purl.obolibrary.org/obo/UBERON_0014405) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [nymph stage](http://purl.obolibrary.org/obo/UBERON_0014405) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### occipital bone `http://purl.obolibrary.org/obo/UBERON_0001676` -#### Removed -- [occipital bone](http://purl.obolibrary.org/obo/UBERON_0001676) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_117570](http://purl.obolibrary.org/obo/NCBITaxon_117570) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "WP" - -#### Added -- [occipital bone](http://purl.obolibrary.org/obo/UBERON_0001676) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_117570](http://purl.obolibrary.org/obo/NCBITaxon_117570) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "WP" - - -### olivary pretectal nucleus `http://purl.obolibrary.org/obo/UBERON_0002565` -#### Removed -- [olivary pretectal nucleus](http://purl.obolibrary.org/obo/UBERON_0002565) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - -#### Added -- [olivary pretectal nucleus](http://purl.obolibrary.org/obo/UBERON_0002565) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - -### omphalopleure `http://purl.obolibrary.org/obo/UBERON_0036271` -#### Removed -- [omphalopleure](http://purl.obolibrary.org/obo/UBERON_0036271) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - -#### Added -- [omphalopleure](http://purl.obolibrary.org/obo/UBERON_0036271) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - - -### open tracheal system `http://purl.obolibrary.org/obo/UBERON_0005155` -#### Removed -- [open tracheal system](http://purl.obolibrary.org/obo/UBERON_0005155) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - -#### Added -- [open tracheal system](http://purl.obolibrary.org/obo/UBERON_0005155) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - -### open tracheal system trachea `http://purl.obolibrary.org/obo/UBERON_0003127` -#### Removed -- [open tracheal system trachea](http://purl.obolibrary.org/obo/UBERON_0003127) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - -#### Added -- [open tracheal system trachea](http://purl.obolibrary.org/obo/UBERON_0003127) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - -### optic pedicel `http://purl.obolibrary.org/obo/UBERON_0010326` -#### Removed -- [optic pedicel](http://purl.obolibrary.org/obo/UBERON_0010326) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7777](http://purl.obolibrary.org/obo/NCBITaxon_7777) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:16496288" - -#### Added -- [optic pedicel](http://purl.obolibrary.org/obo/UBERON_0010326) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7777](http://purl.obolibrary.org/obo/NCBITaxon_7777) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:16496288" - - -### oral cirrus `http://purl.obolibrary.org/obo/UBERON_0012473` -#### Removed -- [oral cirrus](http://purl.obolibrary.org/obo/UBERON_0012473) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [oral cirrus](http://purl.obolibrary.org/obo/UBERON_0012473) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### oral siphon `http://purl.obolibrary.org/obo/UBERON_0009720` -#### Removed -- [oral siphon](http://purl.obolibrary.org/obo/UBERON_0009720) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) - -#### Added -- [oral siphon](http://purl.obolibrary.org/obo/UBERON_0009720) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) - - -### oral subdivision of organism `http://purl.obolibrary.org/obo/UBERON_0008258` -#### Removed -- [oral subdivision of organism](http://purl.obolibrary.org/obo/UBERON_0008258) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [oral subdivision of organism](http://purl.obolibrary.org/obo/UBERON_0008258) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### organ component layer `http://purl.obolibrary.org/obo/UBERON_0004923` -#### Removed -- [organ component layer](http://purl.obolibrary.org/obo/UBERON_0004923) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [organ component layer](http://purl.obolibrary.org/obo/UBERON_0004923) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### organogenesis stage `http://purl.obolibrary.org/obo/UBERON_0000111` -#### Removed -- [organogenesis stage](http://purl.obolibrary.org/obo/UBERON_0000111) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [organogenesis stage](http://purl.obolibrary.org/obo/UBERON_0000111) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### oronasal secretion `http://purl.obolibrary.org/obo/UBERON_0000176` -#### Removed -- [oronasal secretion](http://purl.obolibrary.org/obo/UBERON_0000176) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [oronasal secretion](http://purl.obolibrary.org/obo/UBERON_0000176) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### orovelar muscle `http://purl.obolibrary.org/obo/UBERON_0036148` -#### Removed -- [orovelar muscle](http://purl.obolibrary.org/obo/UBERON_0036148) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_89593](http://purl.obolibrary.org/obo/NCBITaxon_89593) - -#### Added -- [orovelar muscle](http://purl.obolibrary.org/obo/UBERON_0036148) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_89593](http://purl.obolibrary.org/obo/NCBITaxon_89593) - - -### os clitoris `http://purl.obolibrary.org/obo/UBERON_0006440` -#### Removed -- [os clitoris](http://purl.obolibrary.org/obo/UBERON_0006440) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [os clitoris](http://purl.obolibrary.org/obo/UBERON_0006440) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### os penis `http://purl.obolibrary.org/obo/UBERON_0006435` -#### Removed -- [os penis](http://purl.obolibrary.org/obo/UBERON_0006435) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [os penis](http://purl.obolibrary.org/obo/UBERON_0006435) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### osphradium `http://purl.obolibrary.org/obo/UBERON_0007770` -#### Removed -- [osphradium](http://purl.obolibrary.org/obo/UBERON_0007770) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - -#### Added -- [osphradium](http://purl.obolibrary.org/obo/UBERON_0007770) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - - -### ossicone `http://purl.obolibrary.org/obo/UBERON_0013213` -#### Removed -- [ossicone](http://purl.obolibrary.org/obo/UBERON_0013213) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9892](http://purl.obolibrary.org/obo/NCBITaxon_9892) - -#### Added -- [ossicone](http://purl.obolibrary.org/obo/UBERON_0013213) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9892](http://purl.obolibrary.org/obo/NCBITaxon_9892) - - -### otic notch `http://purl.obolibrary.org/obo/UBERON_0013222` -#### Removed -- [otic notch](http://purl.obolibrary.org/obo/UBERON_0013222) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - -#### Added -- [otic notch](http://purl.obolibrary.org/obo/UBERON_0013222) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - -### otolith `http://purl.obolibrary.org/obo/UBERON_0002280` -#### Removed -- [otolith](http://purl.obolibrary.org/obo/UBERON_0002280) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [otolith](http://purl.obolibrary.org/obo/UBERON_0002280) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### outer epithelium `http://purl.obolibrary.org/obo/UBERON_0007376` -#### Removed -- [outer epithelium](http://purl.obolibrary.org/obo/UBERON_0007376) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia:Epidermis_(zoology)" - -#### Added -- [outer epithelium](http://purl.obolibrary.org/obo/UBERON_0007376) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia:Epidermis_(zoology)" - - -### ovary `http://purl.obolibrary.org/obo/UBERON_0000992` -#### Removed -- [ovary](http://purl.obolibrary.org/obo/UBERON_0000992) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33208](http://purl.obolibrary.org/obo/NCBITaxon_33208) - -#### Added -- [ovary](http://purl.obolibrary.org/obo/UBERON_0000992) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33208](http://purl.obolibrary.org/obo/NCBITaxon_33208) - - -### oviduct `http://purl.obolibrary.org/obo/UBERON_0000993` -#### Removed -- [oviduct](http://purl.obolibrary.org/obo/UBERON_0000993) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [oviduct](http://purl.obolibrary.org/obo/UBERON_0000993) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### paired limb/fin `http://purl.obolibrary.org/obo/UBERON_0004708` -#### Removed -- [paired limb/fin](http://purl.obolibrary.org/obo/UBERON_0004708) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [paired limb/fin](http://purl.obolibrary.org/obo/UBERON_0004708) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### paired limb/fin segment `http://purl.obolibrary.org/obo/UBERON_0010538` -#### Removed -- [paired limb/fin segment](http://purl.obolibrary.org/obo/UBERON_0010538) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [paired limb/fin segment](http://purl.obolibrary.org/obo/UBERON_0010538) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### palatine gland `http://purl.obolibrary.org/obo/UBERON_0002447` -#### Removed -- [palatine gland](http://purl.obolibrary.org/obo/UBERON_0002447) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [palatine gland](http://purl.obolibrary.org/obo/UBERON_0002447) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### palatine uvula `http://purl.obolibrary.org/obo/UBERON_0001734` -#### Removed -- [palatine uvula](http://purl.obolibrary.org/obo/UBERON_0001734) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9443](http://purl.obolibrary.org/obo/NCBITaxon_9443) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:1408233" - -#### Added -- [palatine uvula](http://purl.obolibrary.org/obo/UBERON_0001734) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9443](http://purl.obolibrary.org/obo/NCBITaxon_9443) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:1408233" - - -### palpebral bone `http://purl.obolibrary.org/obo/UBERON_0010309` -#### Removed -- [palpebral bone](http://purl.obolibrary.org/obo/UBERON_0010309) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8457](http://purl.obolibrary.org/obo/NCBITaxon_8457) - -#### Added -- [palpebral bone](http://purl.obolibrary.org/obo/UBERON_0010309) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8457](http://purl.obolibrary.org/obo/NCBITaxon_8457) - - -### pancreas `http://purl.obolibrary.org/obo/UBERON_0001264` -#### Removed -- [pancreas](http://purl.obolibrary.org/obo/UBERON_0001264) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:16417468" - -#### Added -- [pancreas](http://purl.obolibrary.org/obo/UBERON_0001264) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:16417468" - - -### panniculus carnosus muscle `http://purl.obolibrary.org/obo/UBERON_0018240` -#### Removed -- [panniculus carnosus muscle](http://purl.obolibrary.org/obo/UBERON_0018240) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [panniculus carnosus muscle](http://purl.obolibrary.org/obo/UBERON_0018240) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### papula `http://purl.obolibrary.org/obo/UBERON_0000205` -#### Removed -- [papula](http://purl.obolibrary.org/obo/UBERON_0000205) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - -#### Added -- [papula](http://purl.obolibrary.org/obo/UBERON_0000205) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - - -### parabronchus `http://purl.obolibrary.org/obo/UBERON_0008961` -#### Removed -- [parabronchus](http://purl.obolibrary.org/obo/UBERON_0008961) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [parabronchus](http://purl.obolibrary.org/obo/UBERON_0008961) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### paracone `http://purl.obolibrary.org/obo/UBERON_0018288` -#### Removed -- [paracone](http://purl.obolibrary.org/obo/UBERON_0018288) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [paracone](http://purl.obolibrary.org/obo/UBERON_0018288) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### paracristid `http://purl.obolibrary.org/obo/UBERON_0018289` -#### Removed -- [paracristid](http://purl.obolibrary.org/obo/UBERON_0018289) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [paracristid](http://purl.obolibrary.org/obo/UBERON_0018289) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### parafibula `http://purl.obolibrary.org/obo/UBERON_0010907` -#### Removed -- [parafibula](http://purl.obolibrary.org/obo/UBERON_0010907) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Palaeos" - -#### Added -- [parafibula](http://purl.obolibrary.org/obo/UBERON_0010907) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Palaeos" - - -### paraglossale `http://purl.obolibrary.org/obo/UBERON_0010908` -#### Removed -- [paraglossale](http://purl.obolibrary.org/obo/UBERON_0010908) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [paraglossale](http://purl.obolibrary.org/obo/UBERON_0010908) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### parallel fiber, teleost `http://purl.obolibrary.org/obo/UBERON_2002218` -#### Removed -- [parallel fiber, teleost](http://purl.obolibrary.org/obo/UBERON_2002218) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32443](http://purl.obolibrary.org/obo/NCBITaxon_32443) - -#### Added -- [parallel fiber, teleost](http://purl.obolibrary.org/obo/UBERON_2002218) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32443](http://purl.obolibrary.org/obo/NCBITaxon_32443) - - -### parapodium `http://purl.obolibrary.org/obo/UBERON_0009473` -#### Removed -- [parapodium](http://purl.obolibrary.org/obo/UBERON_0009473) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6340](http://purl.obolibrary.org/obo/NCBITaxon_6340) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [parapodium](http://purl.obolibrary.org/obo/UBERON_0009473) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6340](http://purl.obolibrary.org/obo/NCBITaxon_6340) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### pararenal fat `http://purl.obolibrary.org/obo/UBERON_0005405` -#### Removed -- [pararenal fat](http://purl.obolibrary.org/obo/UBERON_0005405) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [pararenal fat](http://purl.obolibrary.org/obo/UBERON_0005405) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### paraspinal region `http://purl.obolibrary.org/obo/UBERON_8480060` -#### Removed -- [paraspinal region](http://purl.obolibrary.org/obo/UBERON_8480060) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [paraspinal region](http://purl.obolibrary.org/obo/UBERON_8480060) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### parathyroid gland `http://purl.obolibrary.org/obo/UBERON_0001132` -#### Removed -- [parathyroid gland](http://purl.obolibrary.org/obo/UBERON_0001132) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:16313389" - -#### Added -- [parathyroid gland](http://purl.obolibrary.org/obo/UBERON_0001132) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:16313389" - - -### parenchyma `http://purl.obolibrary.org/obo/UBERON_0000353` -#### Removed -- [parenchyma](http://purl.obolibrary.org/obo/UBERON_0000353) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [parenchyma](http://purl.obolibrary.org/obo/UBERON_0000353) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### parietal ganglion `http://purl.obolibrary.org/obo/UBERON_0008940` -#### Removed -- [parietal ganglion](http://purl.obolibrary.org/obo/UBERON_0008940) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - -#### Added -- [parietal ganglion](http://purl.obolibrary.org/obo/UBERON_0008940) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - - -### parotoid gland `http://purl.obolibrary.org/obo/UBERON_0013219` -#### Removed -- [parotoid gland](http://purl.obolibrary.org/obo/UBERON_0013219) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8292](http://purl.obolibrary.org/obo/NCBITaxon_8292) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [parotoid gland](http://purl.obolibrary.org/obo/UBERON_0013219) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8292](http://purl.obolibrary.org/obo/NCBITaxon_8292) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### pars intercerebralis `http://purl.obolibrary.org/obo/UBERON_0001059` -#### Removed -- [pars intercerebralis](http://purl.obolibrary.org/obo/UBERON_0001059) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - -#### Added -- [pars intercerebralis](http://purl.obolibrary.org/obo/UBERON_0001059) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - -### parvocellular superficial pretectal nucleus `http://purl.obolibrary.org/obo/UBERON_0035564` -#### Removed -- [parvocellular superficial pretectal nucleus](http://purl.obolibrary.org/obo/UBERON_0035564) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32443](http://purl.obolibrary.org/obo/NCBITaxon_32443) - -#### Added -- [parvocellular superficial pretectal nucleus](http://purl.obolibrary.org/obo/UBERON_0035564) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32443](http://purl.obolibrary.org/obo/NCBITaxon_32443) - - -### patagium `http://purl.obolibrary.org/obo/UBERON_0010856` -#### Removed -- [patagium](http://purl.obolibrary.org/obo/UBERON_0010856) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [patagium](http://purl.obolibrary.org/obo/UBERON_0010856) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### pecten oculi `http://purl.obolibrary.org/obo/UBERON_0007622` -#### Removed -- [pecten oculi](http://purl.obolibrary.org/obo/UBERON_0007622) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8457](http://purl.obolibrary.org/obo/NCBITaxon_8457) - -#### Added -- [pecten oculi](http://purl.obolibrary.org/obo/UBERON_0007622) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8457](http://purl.obolibrary.org/obo/NCBITaxon_8457) - - -### pectoral appendage cartilage tissue `http://purl.obolibrary.org/obo/UBERON_0007390` -#### Removed -- [pectoral appendage cartilage tissue](http://purl.obolibrary.org/obo/UBERON_0007390) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [pectoral appendage cartilage tissue](http://purl.obolibrary.org/obo/UBERON_0007390) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### pectoral appendage skeleton `http://purl.obolibrary.org/obo/UBERON_0007272` -#### Removed -- [pectoral appendage skeleton](http://purl.obolibrary.org/obo/UBERON_0007272) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [pectoral appendage skeleton](http://purl.obolibrary.org/obo/UBERON_0007272) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### pedal ganglion `http://purl.obolibrary.org/obo/UBERON_0008939` -#### Removed -- [pedal ganglion](http://purl.obolibrary.org/obo/UBERON_0008939) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - -#### Added -- [pedal ganglion](http://purl.obolibrary.org/obo/UBERON_0008939) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - - -### pedicellaria `http://purl.obolibrary.org/obo/UBERON_0008261` -#### Removed -- [pedicellaria](http://purl.obolibrary.org/obo/UBERON_0008261) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - -#### Added -- [pedicellaria](http://purl.obolibrary.org/obo/UBERON_0008261) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - - -### pelvic appendage cartilage tissue `http://purl.obolibrary.org/obo/UBERON_0007391` -#### Removed -- [pelvic appendage cartilage tissue](http://purl.obolibrary.org/obo/UBERON_0007391) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [pelvic appendage cartilage tissue](http://purl.obolibrary.org/obo/UBERON_0007391) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### pelvic appendage skeleton `http://purl.obolibrary.org/obo/UBERON_0007273` -#### Removed -- [pelvic appendage skeleton](http://purl.obolibrary.org/obo/UBERON_0007273) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [pelvic appendage skeleton](http://purl.obolibrary.org/obo/UBERON_0007273) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### pelvic spur `http://purl.obolibrary.org/obo/UBERON_0005161` -#### Removed -- [pelvic spur](http://purl.obolibrary.org/obo/UBERON_0005161) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8570](http://purl.obolibrary.org/obo/NCBITaxon_8570) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [pelvic spur](http://purl.obolibrary.org/obo/UBERON_0005161) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8570](http://purl.obolibrary.org/obo/NCBITaxon_8570) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### pericardio-peritoneal canal `http://purl.obolibrary.org/obo/UBERON_0006275` -#### Removed -- [pericardio-peritoneal canal](http://purl.obolibrary.org/obo/UBERON_0006275) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [pericardio-peritoneal canal](http://purl.obolibrary.org/obo/UBERON_0006275) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### perirenal fat `http://purl.obolibrary.org/obo/UBERON_0005406` -#### Removed -- [perirenal fat](http://purl.obolibrary.org/obo/UBERON_0005406) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [perirenal fat](http://purl.obolibrary.org/obo/UBERON_0005406) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### pharyngeal arch `http://purl.obolibrary.org/obo/UBERON_0002539` -#### Removed -- [pharyngeal arch](http://purl.obolibrary.org/obo/UBERON_0002539) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "http://tolweb.org/Chordata/2499" - -#### Added -- [pharyngeal arch](http://purl.obolibrary.org/obo/UBERON_0002539) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "http://tolweb.org/Chordata/2499" - - -### pharyngeal arch system `http://purl.obolibrary.org/obo/UBERON_0008814` -#### Removed -- [pharyngeal arch system](http://purl.obolibrary.org/obo/UBERON_0008814) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [pharyngeal arch system](http://purl.obolibrary.org/obo/UBERON_0008814) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### pharyngeal bar `http://purl.obolibrary.org/obo/UBERON_0034937` -#### Removed -- [pharyngeal bar](http://purl.obolibrary.org/obo/UBERON_0034937) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33511](http://purl.obolibrary.org/obo/NCBITaxon_33511) - -#### Added -- [pharyngeal bar](http://purl.obolibrary.org/obo/UBERON_0034937) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33511](http://purl.obolibrary.org/obo/NCBITaxon_33511) - - -### pharyngeal pouch `http://purl.obolibrary.org/obo/UBERON_0004117` -#### Removed -- [pharyngeal pouch](http://purl.obolibrary.org/obo/UBERON_0004117) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "http://tolweb.org/Chordata/2499" - -#### Added -- [pharyngeal pouch](http://purl.obolibrary.org/obo/UBERON_0004117) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "http://tolweb.org/Chordata/2499" - - -### pharyngeal slit `http://purl.obolibrary.org/obo/UBERON_0008815` -#### Removed -- [pharyngeal slit](http://purl.obolibrary.org/obo/UBERON_0008815) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33511](http://purl.obolibrary.org/obo/NCBITaxon_33511) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:11961109" - -#### Added -- [pharyngeal slit](http://purl.obolibrary.org/obo/UBERON_0008815) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33511](http://purl.obolibrary.org/obo/NCBITaxon_33511) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:11961109" - - -### pharyngula stage `http://purl.obolibrary.org/obo/UBERON_0004707` -#### Removed -- [pharyngula stage](http://purl.obolibrary.org/obo/UBERON_0004707) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [pharyngula stage](http://purl.obolibrary.org/obo/UBERON_0004707) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### pharynx `http://purl.obolibrary.org/obo/UBERON_0006562` -#### Removed -- [pharynx](http://purl.obolibrary.org/obo/UBERON_0006562) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [pharynx](http://purl.obolibrary.org/obo/UBERON_0006562) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### philtrum `http://purl.obolibrary.org/obo/UBERON_0005402` -#### Removed -- [philtrum](http://purl.obolibrary.org/obo/UBERON_0005402) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [philtrum](http://purl.obolibrary.org/obo/UBERON_0005402) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### phonic lip `http://purl.obolibrary.org/obo/UBERON_0013176` -#### Removed -- [phonic lip](http://purl.obolibrary.org/obo/UBERON_0013176) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9721](http://purl.obolibrary.org/obo/NCBITaxon_9721) - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "absent in baleen whales" - -#### Added -- [phonic lip](http://purl.obolibrary.org/obo/UBERON_0013176) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9721](http://purl.obolibrary.org/obo/NCBITaxon_9721) - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "absent in baleen whales" - - -### pia mater `http://purl.obolibrary.org/obo/UBERON_0002361` -#### Removed -- [pia mater](http://purl.obolibrary.org/obo/UBERON_0002361) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0073040584" - - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "check-aves" - -#### Added -- [pia mater](http://purl.obolibrary.org/obo/UBERON_0002361) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0073040584" - - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "check-aves" - - -### pinhole eye `http://purl.obolibrary.org/obo/UBERON_0000048` -#### Removed -- [pinhole eye](http://purl.obolibrary.org/obo/UBERON_0000048) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32577](http://purl.obolibrary.org/obo/NCBITaxon_32577) - -#### Added -- [pinhole eye](http://purl.obolibrary.org/obo/UBERON_0000048) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32577](http://purl.obolibrary.org/obo/NCBITaxon_32577) - - -### pinna `http://purl.obolibrary.org/obo/UBERON_0001757` -#### Removed -- [pinna](http://purl.obolibrary.org/obo/UBERON_0001757) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [pinna](http://purl.obolibrary.org/obo/UBERON_0001757) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### piriform cortex `http://purl.obolibrary.org/obo/UBERON_0004725` -#### Removed -- [piriform cortex](http://purl.obolibrary.org/obo/UBERON_0004725) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [piriform cortex](http://purl.obolibrary.org/obo/UBERON_0004725) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### piston cartilage `http://purl.obolibrary.org/obo/UBERON_0010896` -#### Removed -- [piston cartilage](http://purl.obolibrary.org/obo/UBERON_0010896) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_117569](http://purl.obolibrary.org/obo/NCBITaxon_117569) - -#### Added -- [piston cartilage](http://purl.obolibrary.org/obo/UBERON_0010896) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_117569](http://purl.obolibrary.org/obo/NCBITaxon_117569) - - -### pituitary gland `http://purl.obolibrary.org/obo/UBERON_0000007` -#### Removed -- [pituitary gland](http://purl.obolibrary.org/obo/UBERON_0000007) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:19084529" - -#### Added -- [pituitary gland](http://purl.obolibrary.org/obo/UBERON_0000007) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:19084529" - - -### placenta `http://purl.obolibrary.org/obo/UBERON_0001987` -#### Removed -- [placenta](http://purl.obolibrary.org/obo/UBERON_0001987) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32525](http://purl.obolibrary.org/obo/NCBITaxon_32525) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "https://github.com/obophenotype/uberon/issues/1376" - -#### Added -- [placenta](http://purl.obolibrary.org/obo/UBERON_0001987) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32525](http://purl.obolibrary.org/obo/NCBITaxon_32525) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "https://github.com/obophenotype/uberon/issues/1376" - - -### placentome of cotyledonary placenta `http://purl.obolibrary.org/obo/UBERON_0017258` -#### Removed -- [placentome of cotyledonary placenta](http://purl.obolibrary.org/obo/UBERON_0017258) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9845](http://purl.obolibrary.org/obo/NCBITaxon_9845) - -#### Added -- [placentome of cotyledonary placenta](http://purl.obolibrary.org/obo/UBERON_0017258) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9845](http://purl.obolibrary.org/obo/NCBITaxon_9845) - - -### platypus crural gland `http://purl.obolibrary.org/obo/UBERON_0011580` -#### Removed -- [platypus crural gland](http://purl.obolibrary.org/obo/UBERON_0011580) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9257](http://purl.obolibrary.org/obo/NCBITaxon_9257) - -#### Added -- [platypus crural gland](http://purl.obolibrary.org/obo/UBERON_0011580) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9257](http://purl.obolibrary.org/obo/NCBITaxon_9257) - - -### pleura `http://purl.obolibrary.org/obo/UBERON_0000977` -#### Removed -- [pleura](http://purl.obolibrary.org/obo/UBERON_0000977) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - -#### Added -- [pleura](http://purl.obolibrary.org/obo/UBERON_0000977) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - -### pleural ganglion `http://purl.obolibrary.org/obo/UBERON_0008941` -#### Removed -- [pleural ganglion](http://purl.obolibrary.org/obo/UBERON_0008941) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - -#### Added -- [pleural ganglion](http://purl.obolibrary.org/obo/UBERON_0008941) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - - -### pleuropericardial canals `http://purl.obolibrary.org/obo/UBERON_0006277` -#### Removed -- [pleuropericardial canals](http://purl.obolibrary.org/obo/UBERON_0006277) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [pleuropericardial canals](http://purl.obolibrary.org/obo/UBERON_0006277) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### pleuropericardial folds `http://purl.obolibrary.org/obo/UBERON_0006278` -#### Removed -- [pleuropericardial folds](http://purl.obolibrary.org/obo/UBERON_0006278) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [pleuropericardial folds](http://purl.obolibrary.org/obo/UBERON_0006278) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### pleuroperitoneal canal `http://purl.obolibrary.org/obo/UBERON_0006279` -#### Removed -- [pleuroperitoneal canal](http://purl.obolibrary.org/obo/UBERON_0006279) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [pleuroperitoneal canal](http://purl.obolibrary.org/obo/UBERON_0006279) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### plica semilunaris of conjunctiva `http://purl.obolibrary.org/obo/UBERON_0010209` -#### Removed -- [plica semilunaris of conjunctiva](http://purl.obolibrary.org/obo/UBERON_0010209) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [plica semilunaris of conjunctiva](http://purl.obolibrary.org/obo/UBERON_0010209) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### pons `http://purl.obolibrary.org/obo/UBERON_0000988` -#### Removed -- [pons](http://purl.obolibrary.org/obo/UBERON_0000988) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [pons](http://purl.obolibrary.org/obo/UBERON_0000988) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### post-anal tail `http://purl.obolibrary.org/obo/UBERON_0007812` -#### Removed -- [post-anal tail](http://purl.obolibrary.org/obo/UBERON_0007812) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "cjm" - - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "possible exception in hemichordates" - -#### Added -- [post-anal tail](http://purl.obolibrary.org/obo/UBERON_0007812) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "cjm" - - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "possible exception in hemichordates" - - -### post-anal tail bud `http://purl.obolibrary.org/obo/UBERON_0002533` -#### Removed -- [post-anal tail bud](http://purl.obolibrary.org/obo/UBERON_0002533) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [post-anal tail bud](http://purl.obolibrary.org/obo/UBERON_0002533) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### postcingulum `http://purl.obolibrary.org/obo/UBERON_0018290` -#### Removed -- [postcingulum](http://purl.obolibrary.org/obo/UBERON_0018290) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [postcingulum](http://purl.obolibrary.org/obo/UBERON_0018290) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### posterior commissure `http://purl.obolibrary.org/obo/UBERON_0000936` -#### Removed -- [posterior commissure](http://purl.obolibrary.org/obo/UBERON_0000936) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [posterior commissure](http://purl.obolibrary.org/obo/UBERON_0000936) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### posterior ethmoidal vein `http://purl.obolibrary.org/obo/UBERON_8420003` - -#### Added -- [posterior ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420003) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:51772" - -- [posterior ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420003) [label](http://www.w3.org/2000/01/rdf-schema#label) "posterior ethmoidal vein" - -- [posterior ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420003) [date](http://purl.org/dc/terms/date) "2024-08-28T09:55:00Z" - -- [posterior ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420003) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An ethmoidal vein that accompanies a posterior ethmoidal artery. The posterior ethmoidal vein often drains into a venous network under the orbital roof." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://doi.org/10.1167/iovs.02-0865" - - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://doi.org/10.1007/978-3-031-40697-3_23" - -- [posterior ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420003) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-8314-2140](https://orcid.org/0000-0001-8314-2140) - -- Class: [posterior ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420003) - -- [posterior ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420003) SubClassOf [ethmoidal vein](http://purl.obolibrary.org/obo/UBERON_8420001) - - -### posterior humeral circumflex artery `http://purl.obolibrary.org/obo/UBERON_8600107` - -#### Added -- [posterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600107) [label](http://www.w3.org/2000/01/rdf-schema#label) "posterior humeral circumflex artery" - -- [posterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600107) [date](http://purl.org/dc/terms/date) "2024-08-20T09:53:48Z" - -- [posterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600107) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) - -- [posterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600107) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:22684" - -- [posterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600107) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that branches from the axilliary artery and supplies the deltoid, teres major, teres minor, and long and lateral heads of the triceps brachii muscles, glenohumeral joint, and the cutaneous supply to the area posterolateral to the proximal humerus. This artery courses posteriorly with the axillary nerve, through the quadrangular space, to the posterior aspect of the humerus and anastomoses with the anterior humeral circumflex artery." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://www.elsevier.com/resources/anatomy/cardiovascular-system/arteries/posterior-circumflex-humeral-artery/24676" - -- Class: [posterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600107) - -- [posterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600107) SubClassOf ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [glenohumeral joint](http://purl.obolibrary.org/obo/UBERON_0001470)) and ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [deltoid](http://purl.obolibrary.org/obo/UBERON_0001476)) and ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [teres major muscle](http://purl.obolibrary.org/obo/UBERON_0001478)) and ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [triceps brachii](http://purl.obolibrary.org/obo/UBERON_0001509)) and ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [upper arm skin](http://purl.obolibrary.org/obo/UBERON_0004263)) and ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [teres minor muscle](http://purl.obolibrary.org/obo/UBERON_0010496)) - -- [posterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600107) SubClassOf [artery](http://purl.obolibrary.org/obo/UBERON_0001637) - -- [posterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600107) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [axillary artery](http://purl.obolibrary.org/obo/UBERON_0001394) - -- [posterior humeral circumflex artery](http://purl.obolibrary.org/obo/UBERON_8600107) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [shoulder](http://purl.obolibrary.org/obo/UBERON_0001467) - - -### posterior pretectal nucleus `http://purl.obolibrary.org/obo/UBERON_0006848` -#### Removed -- [posterior pretectal nucleus](http://purl.obolibrary.org/obo/UBERON_0006848) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - -#### Added -- [posterior pretectal nucleus](http://purl.obolibrary.org/obo/UBERON_0006848) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - - -### posterior region of body `http://purl.obolibrary.org/obo/UBERON_0000154` -#### Removed -- [posterior region of body](http://purl.obolibrary.org/obo/UBERON_0000154) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [posterior region of body](http://purl.obolibrary.org/obo/UBERON_0000154) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### posteroloph `http://purl.obolibrary.org/obo/UBERON_0018291` -#### Removed -- [posteroloph](http://purl.obolibrary.org/obo/UBERON_0018291) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [posteroloph](http://purl.obolibrary.org/obo/UBERON_0018291) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### postorbital bar `http://purl.obolibrary.org/obo/UBERON_0012108` -#### Removed -- [postorbital bar](http://purl.obolibrary.org/obo/UBERON_0012108) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [postorbital bar](http://purl.obolibrary.org/obo/UBERON_0012108) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### pre-Botzinger complex `http://purl.obolibrary.org/obo/UBERON_0006007` -#### Removed -- [pre-Botzinger complex](http://purl.obolibrary.org/obo/UBERON_0006007) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [pre-Botzinger complex](http://purl.obolibrary.org/obo/UBERON_0006007) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### precingulum `http://purl.obolibrary.org/obo/UBERON_0018293` -#### Removed -- [precingulum](http://purl.obolibrary.org/obo/UBERON_0018293) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [precingulum](http://purl.obolibrary.org/obo/UBERON_0018293) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### prefrontal bone `http://purl.obolibrary.org/obo/UBERON_0010750` -#### Removed -- [prefrontal bone](http://purl.obolibrary.org/obo/UBERON_0010750) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [prefrontal bone](http://purl.obolibrary.org/obo/UBERON_0010750) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### prepelvic clasper `http://purl.obolibrary.org/obo/UBERON_0017623` -#### Removed -- [prepelvic clasper](http://purl.obolibrary.org/obo/UBERON_0017623) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7863](http://purl.obolibrary.org/obo/NCBITaxon_7863) - -#### Added -- [prepelvic clasper](http://purl.obolibrary.org/obo/UBERON_0017623) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7863](http://purl.obolibrary.org/obo/NCBITaxon_7863) - - -### preprotocrista `http://purl.obolibrary.org/obo/UBERON_0018295` -#### Removed -- [preprotocrista](http://purl.obolibrary.org/obo/UBERON_0018295) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [preprotocrista](http://purl.obolibrary.org/obo/UBERON_0018295) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### prepupa `http://purl.obolibrary.org/obo/UBERON_0003142` -#### Removed -- [prepupa](http://purl.obolibrary.org/obo/UBERON_0003142) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - -#### Added -- [prepupa](http://purl.obolibrary.org/obo/UBERON_0003142) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) - - -### presumptive axochord `http://purl.obolibrary.org/obo/UBERON_0035148` -#### Removed -- [presumptive axochord](http://purl.obolibrary.org/obo/UBERON_0035148) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6340](http://purl.obolibrary.org/obo/NCBITaxon_6340) - -#### Added -- [presumptive axochord](http://purl.obolibrary.org/obo/UBERON_0035148) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6340](http://purl.obolibrary.org/obo/NCBITaxon_6340) - - -### presumptive ectoderm `http://purl.obolibrary.org/obo/UBERON_0006601` -#### Removed -- [presumptive ectoderm](http://purl.obolibrary.org/obo/UBERON_0006601) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [presumptive ectoderm](http://purl.obolibrary.org/obo/UBERON_0006601) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### presumptive endoderm `http://purl.obolibrary.org/obo/UBERON_0006595` -#### Removed -- [presumptive endoderm](http://purl.obolibrary.org/obo/UBERON_0006595) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [presumptive endoderm](http://purl.obolibrary.org/obo/UBERON_0006595) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### presumptive mesoderm `http://purl.obolibrary.org/obo/UBERON_0006603` -#### Removed -- [presumptive mesoderm](http://purl.obolibrary.org/obo/UBERON_0006603) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [presumptive mesoderm](http://purl.obolibrary.org/obo/UBERON_0006603) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### priapium `http://purl.obolibrary.org/obo/UBERON_0013672` -#### Removed -- [priapium](http://purl.obolibrary.org/obo/UBERON_0013672) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8075](http://purl.obolibrary.org/obo/NCBITaxon_8075) - -#### Added -- [priapium](http://purl.obolibrary.org/obo/UBERON_0013672) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8075](http://purl.obolibrary.org/obo/NCBITaxon_8075) - - -### primary dorsal nerve cord `http://purl.obolibrary.org/obo/UBERON_0005054` -#### Removed -- [primary dorsal nerve cord](http://purl.obolibrary.org/obo/UBERON_0005054) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "http://tolweb.org/Chordata/2499" - -#### Added -- [primary dorsal nerve cord](http://purl.obolibrary.org/obo/UBERON_0005054) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "http://tolweb.org/Chordata/2499" - - -### primary nerve cord `http://purl.obolibrary.org/obo/UBERON_0005053` -#### Removed -- [primary nerve cord](http://purl.obolibrary.org/obo/UBERON_0005053) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [primary nerve cord](http://purl.obolibrary.org/obo/UBERON_0005053) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### primitive knot `http://purl.obolibrary.org/obo/UBERON_0003062` -#### Removed -- [primitive knot](http://purl.obolibrary.org/obo/UBERON_0003062) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [primitive knot](http://purl.obolibrary.org/obo/UBERON_0003062) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### primitive urogenital sinus `http://purl.obolibrary.org/obo/UBERON_0000164` -#### Removed -- [primitive urogenital sinus](http://purl.obolibrary.org/obo/UBERON_0000164) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [primitive urogenital sinus](http://purl.obolibrary.org/obo/UBERON_0000164) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### prismatic cartilage `http://purl.obolibrary.org/obo/UBERON_0018352` -#### Removed -- [prismatic cartilage](http://purl.obolibrary.org/obo/UBERON_0018352) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7777](http://purl.obolibrary.org/obo/NCBITaxon_7777) - -#### Added -- [prismatic cartilage](http://purl.obolibrary.org/obo/UBERON_0018352) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7777](http://purl.obolibrary.org/obo/NCBITaxon_7777) - - -### proamniotic cavity `http://purl.obolibrary.org/obo/UBERON_0009742` -#### Removed -- [proamniotic cavity](http://purl.obolibrary.org/obo/UBERON_0009742) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - -#### Added -- [proamniotic cavity](http://purl.obolibrary.org/obo/UBERON_0009742) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - -### proctodeum `http://purl.obolibrary.org/obo/UBERON_0000931` -#### Removed -- [proctodeum](http://purl.obolibrary.org/obo/UBERON_0000931) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [proctodeum](http://purl.obolibrary.org/obo/UBERON_0000931) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### prostate gland `http://purl.obolibrary.org/obo/UBERON_0002367` -#### Removed -- [prostate gland](http://purl.obolibrary.org/obo/UBERON_0002367) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [prostate gland](http://purl.obolibrary.org/obo/UBERON_0002367) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### prostatic urethra `http://purl.obolibrary.org/obo/UBERON_0001335` -#### Removed -- [prostatic urethra](http://purl.obolibrary.org/obo/UBERON_0001335) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [prostatic urethra](http://purl.obolibrary.org/obo/UBERON_0001335) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - - - -### prostomium `http://purl.obolibrary.org/obo/UBERON_0008834` -#### Removed -- [prostomium](http://purl.obolibrary.org/obo/UBERON_0008834) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6340](http://purl.obolibrary.org/obo/NCBITaxon_6340) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [prostomium](http://purl.obolibrary.org/obo/UBERON_0008834) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6340](http://purl.obolibrary.org/obo/NCBITaxon_6340) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### proventriculus `http://purl.obolibrary.org/obo/UBERON_0007357` -#### Removed -- [proventriculus](http://purl.obolibrary.org/obo/UBERON_0007357) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [proventriculus](http://purl.obolibrary.org/obo/UBERON_0007357) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### proximal ureter `http://purl.obolibrary.org/obo/UBERON_8600108` - -#### Added -- [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:15882" - -- [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600108" - -- [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upper ureter" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-4341-3265](https://orcid.org/0000-0002-4341-3265) - -- [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) - -- [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) [hasOBONamespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" - -- [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) [contributor](http://purl.org/dc/terms/contributor) [X](https://orcid.org/0000-0003-2804-127X) - -- [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "abdominal ureter" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-7655-4833](https://orcid.org/0000-0001-7655-4833) - -- [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A segment of the ureter that extends from the renal pelvis to the common iliac artery bifurcation (to form the internal and external iliac arteries)." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) [label](http://www.w3.org/2000/01/rdf-schema#label) "proximal ureter" - -- [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) [date](http://purl.org/dc/terms/date) "2024-08-28T13:51:59Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - -- Class: [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) - -- [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) SubClassOf [excretory tube](http://purl.obolibrary.org/obo/UBERON_0006555) - -- [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [ureter](http://purl.obolibrary.org/obo/UBERON_0000056) - -- [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) SubClassOf [mesoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004120) - -- [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) SubClassOf [RO_0002150](http://purl.obolibrary.org/obo/RO_0002150) some [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) - - -### pseudoclasper `http://purl.obolibrary.org/obo/UBERON_0017624` -#### Removed -- [pseudoclasper](http://purl.obolibrary.org/obo/UBERON_0017624) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_181400](http://purl.obolibrary.org/obo/NCBITaxon_181400) - -#### Added -- [pseudoclasper](http://purl.obolibrary.org/obo/UBERON_0017624) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_181400](http://purl.obolibrary.org/obo/NCBITaxon_181400) - - -### pterygomandibular raphe `http://purl.obolibrary.org/obo/UBERON_0011349` -#### Removed -- [pterygomandibular raphe](http://purl.obolibrary.org/obo/UBERON_0011349) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [pterygomandibular raphe](http://purl.obolibrary.org/obo/UBERON_0011349) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### pterygopodial gland `http://purl.obolibrary.org/obo/UBERON_0017625` -#### Removed -- [pterygopodial gland](http://purl.obolibrary.org/obo/UBERON_0017625) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_117893](http://purl.obolibrary.org/obo/NCBITaxon_117893) - -#### Added -- [pterygopodial gland](http://purl.obolibrary.org/obo/UBERON_0017625) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_117893](http://purl.obolibrary.org/obo/NCBITaxon_117893) - - -### pupa `http://purl.obolibrary.org/obo/UBERON_0003143` -#### Removed -- [pupa](http://purl.obolibrary.org/obo/UBERON_0003143) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33392](http://purl.obolibrary.org/obo/NCBITaxon_33392) - -#### Added -- [pupa](http://purl.obolibrary.org/obo/UBERON_0003143) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33392](http://purl.obolibrary.org/obo/NCBITaxon_33392) - - -### pupal stage `http://purl.obolibrary.org/obo/UBERON_0000070` -#### Removed -- [pupal stage](http://purl.obolibrary.org/obo/UBERON_0000070) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33392](http://purl.obolibrary.org/obo/NCBITaxon_33392) - -#### Added -- [pupal stage](http://purl.obolibrary.org/obo/UBERON_0000070) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33392](http://purl.obolibrary.org/obo/NCBITaxon_33392) - - -### pus `http://purl.obolibrary.org/obo/UBERON_0000177` -#### Removed -- [pus](http://purl.obolibrary.org/obo/UBERON_0000177) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [pus](http://purl.obolibrary.org/obo/UBERON_0000177) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### pygostyle `http://purl.obolibrary.org/obo/UBERON_0007801` -#### Removed -- [pygostyle](http://purl.obolibrary.org/obo/UBERON_0007801) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [pygostyle](http://purl.obolibrary.org/obo/UBERON_0007801) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### pyloric stomach `http://purl.obolibrary.org/obo/UBERON_0008246` -#### Removed -- [pyloric stomach](http://purl.obolibrary.org/obo/UBERON_0008246) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - -#### Added -- [pyloric stomach](http://purl.obolibrary.org/obo/UBERON_0008246) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - - -### radula `http://purl.obolibrary.org/obo/UBERON_0004289` -#### Removed -- [radula](http://purl.obolibrary.org/obo/UBERON_0004289) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - -#### Added -- [radula](http://purl.obolibrary.org/obo/UBERON_0004289) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - - -### rattle `http://purl.obolibrary.org/obo/UBERON_0013073` -#### Removed -- [rattle](http://purl.obolibrary.org/obo/UBERON_0013073) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8570](http://purl.obolibrary.org/obo/NCBITaxon_8570) - -#### Added -- [rattle](http://purl.obolibrary.org/obo/UBERON_0013073) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8570](http://purl.obolibrary.org/obo/NCBITaxon_8570) - - -### rectal salt gland `http://purl.obolibrary.org/obo/UBERON_0004757` -#### Removed -- [rectal salt gland](http://purl.obolibrary.org/obo/UBERON_0004757) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - -#### Added -- [rectal salt gland](http://purl.obolibrary.org/obo/UBERON_0004757) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - -### recurrent laryngeal nerve `http://purl.obolibrary.org/obo/UBERON_0003716` -#### Removed -- [recurrent laryngeal nerve](http://purl.obolibrary.org/obo/UBERON_0003716) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - -#### Added -- [recurrent laryngeal nerve](http://purl.obolibrary.org/obo/UBERON_0003716) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - -### red nucleus `http://purl.obolibrary.org/obo/UBERON_0001947` -#### Removed -- [red nucleus](http://purl.obolibrary.org/obo/UBERON_0001947) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - -#### Added -- [red nucleus](http://purl.obolibrary.org/obo/UBERON_0001947) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - - -### regurgitated pellet `http://purl.obolibrary.org/obo/UBERON_0036018` -#### Removed -- [regurgitated pellet](http://purl.obolibrary.org/obo/UBERON_0036018) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [regurgitated pellet](http://purl.obolibrary.org/obo/UBERON_0036018) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### regurgitated substance `http://purl.obolibrary.org/obo/UBERON_0036017` -#### Removed -- [regurgitated substance](http://purl.obolibrary.org/obo/UBERON_0036017) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [regurgitated substance](http://purl.obolibrary.org/obo/UBERON_0036017) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### renal system `http://purl.obolibrary.org/obo/UBERON_0001008` -#### Removed -- [renal system](http://purl.obolibrary.org/obo/UBERON_0001008) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [renal system](http://purl.obolibrary.org/obo/UBERON_0001008) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### renal tubule `http://purl.obolibrary.org/obo/UBERON_0009773` -#### Removed -- [renal tubule](http://purl.obolibrary.org/obo/UBERON_0009773) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [renal tubule](http://purl.obolibrary.org/obo/UBERON_0009773) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### respiratory system `http://purl.obolibrary.org/obo/UBERON_0001004` -#### Removed -- [respiratory system](http://purl.obolibrary.org/obo/UBERON_0001004) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [respiratory system](http://purl.obolibrary.org/obo/UBERON_0001004) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### respiratory velum `http://purl.obolibrary.org/obo/UBERON_0012121` -#### Removed -- [respiratory velum](http://purl.obolibrary.org/obo/UBERON_0012121) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_89593](http://purl.obolibrary.org/obo/NCBITaxon_89593) - -#### Added -- [respiratory velum](http://purl.obolibrary.org/obo/UBERON_0012121) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_89593](http://purl.obolibrary.org/obo/NCBITaxon_89593) - - -### reticular tissue `http://purl.obolibrary.org/obo/UBERON_0006804` -#### Removed -- [reticular tissue](http://purl.obolibrary.org/obo/UBERON_0006804) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [reticular tissue](http://purl.obolibrary.org/obo/UBERON_0006804) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### reticuloendothelial system `http://purl.obolibrary.org/obo/UBERON_0000363` -#### Removed -- [reticuloendothelial system](http://purl.obolibrary.org/obo/UBERON_0000363) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [reticuloendothelial system](http://purl.obolibrary.org/obo/UBERON_0000363) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### retrocerebral complex `http://purl.obolibrary.org/obo/UBERON_0012325` -#### Removed -- [retrocerebral complex](http://purl.obolibrary.org/obo/UBERON_0012325) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - -#### Added -- [retrocerebral complex](http://purl.obolibrary.org/obo/UBERON_0012325) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - -### rhinarium `http://purl.obolibrary.org/obo/UBERON_0011256` -#### Removed -- [rhinarium](http://purl.obolibrary.org/obo/UBERON_0011256) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [rhinarium](http://purl.obolibrary.org/obo/UBERON_0011256) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### right distal ureter `http://purl.obolibrary.org/obo/UBERON_8600111` - -#### Added -- [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) [hasOBONamespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" - -- [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600111" - -- [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-4341-3265](https://orcid.org/0000-0002-4341-3265) - -- [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) [contributor](http://purl.org/dc/terms/contributor) [X](https://orcid.org/0000-0003-2804-127X) - -- [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) [date](http://purl.org/dc/terms/date) "2024-08-28T15:12:29Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - -- [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:15886" - -- [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "right pelvic ureter" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "right lower ureter" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) [label](http://www.w3.org/2000/01/rdf-schema#label) "right distal ureter" - -- [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) - -- [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A distal ureter that is part of the right ureter." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-7655-4833](https://orcid.org/0000-0001-7655-4833) - -- Class: [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) - -- [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) EquivalentTo [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [right ureter](http://purl.obolibrary.org/obo/UBERON_0001222)) - -- [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [right ureter](http://purl.obolibrary.org/obo/UBERON_0001222) - -- [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) SubClassOf [RO_0002150](http://purl.obolibrary.org/obo/RO_0002150) some [right proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600113) - -- [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) SubClassOf [distal ureter](http://purl.obolibrary.org/obo/UBERON_8600109) - -- [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) SubClassOf [RO_0002150](http://purl.obolibrary.org/obo/RO_0002150) some [right intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600115) - - -### right intramural ureter `http://purl.obolibrary.org/obo/UBERON_8600115` - -#### Added -- [right intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600115) [label](http://www.w3.org/2000/01/rdf-schema#label) "right intramural ureter" - -- [right intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600115) [contributor](http://purl.org/dc/terms/contributor) [X](https://orcid.org/0000-0003-2804-127X) - -- [right intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600115) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600115" - -- [right intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600115) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "right intravesical ureter" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.53347/rID-23183" - -- [right intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600115) [hasOBONamespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" - -- [right intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600115) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An intramural ureter that is part of the right ureter." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [right intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600115) [date](http://purl.org/dc/terms/date) "2024-08-28T16:10:44Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - -- [right intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600115) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-4341-3265](https://orcid.org/0000-0002-4341-3265) - -- [right intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600115) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-7655-4833](https://orcid.org/0000-0001-7655-4833) - -- [right intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600115) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) - -- Class: [right intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600115) - -- [right intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600115) EquivalentTo [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [right ureter](http://purl.obolibrary.org/obo/UBERON_0001222)) - -- [right intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600115) SubClassOf [RO_0002150](http://purl.obolibrary.org/obo/RO_0002150) some [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) - -- [right intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600115) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [right ureter](http://purl.obolibrary.org/obo/UBERON_0001222) - -- [right intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600115) SubClassOf [intramural ureter](http://purl.obolibrary.org/obo/UBERON_8600110) - - -### right proximal ureter `http://purl.obolibrary.org/obo/UBERON_8600113` - -#### Added -- [right proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600113) [hasOBONamespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" - -- [right proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600113) [label](http://www.w3.org/2000/01/rdf-schema#label) "right proximal ureter" - -- [right proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600113) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "right abdominal ureter" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [right proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600113) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-4341-3265](https://orcid.org/0000-0002-4341-3265) - -- [right proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600113) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:15884" - -- [right proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600113) [date](http://purl.org/dc/terms/date) "2024-08-28T15:19:31Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - -- [right proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600113) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-7655-4833](https://orcid.org/0000-0001-7655-4833) - -- [right proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600113) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600113" - -- [right proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600113) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "right upper ureter" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- [right proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600113) [contributor](http://purl.org/dc/terms/contributor) [X](https://orcid.org/0000-0003-2804-127X) - -- [right proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600113) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) - -- [right proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600113) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A proximal ureter that is part of the right ureter." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422575" - -- Class: [right proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600113) - -- [right proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600113) EquivalentTo [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [right ureter](http://purl.obolibrary.org/obo/UBERON_0001222)) - -- [right proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600113) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [right ureter](http://purl.obolibrary.org/obo/UBERON_0001222) - -- [right proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600113) SubClassOf [RO_0002150](http://purl.obolibrary.org/obo/RO_0002150) some [right distal ureter](http://purl.obolibrary.org/obo/UBERON_8600111) - -- [right proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600113) SubClassOf [proximal ureter](http://purl.obolibrary.org/obo/UBERON_8600108) - - -### risorius muscle `http://purl.obolibrary.org/obo/UBERON_0008598` -#### Removed -- [risorius muscle](http://purl.obolibrary.org/obo/UBERON_0008598) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_207598](http://purl.obolibrary.org/obo/NCBITaxon_207598) - -#### Added -- [risorius muscle](http://purl.obolibrary.org/obo/UBERON_0008598) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_207598](http://purl.obolibrary.org/obo/NCBITaxon_207598) - - -### robust nucleus of arcopallium `http://purl.obolibrary.org/obo/UBERON_0035808` -#### Removed -- [robust nucleus of arcopallium](http://purl.obolibrary.org/obo/UBERON_0035808) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9126](http://purl.obolibrary.org/obo/NCBITaxon_9126) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "GOC:cjm" - -#### Added -- [robust nucleus of arcopallium](http://purl.obolibrary.org/obo/UBERON_0035808) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9126](http://purl.obolibrary.org/obo/NCBITaxon_9126) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "GOC:cjm" - - -### rostral organ `http://purl.obolibrary.org/obo/UBERON_0011287` -#### Removed -- [rostral organ](http://purl.obolibrary.org/obo/UBERON_0011287) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_118072](http://purl.obolibrary.org/obo/NCBITaxon_118072) - -#### Added -- [rostral organ](http://purl.obolibrary.org/obo/UBERON_0011287) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_118072](http://purl.obolibrary.org/obo/NCBITaxon_118072) - - -### round ligament of liver `http://purl.obolibrary.org/obo/UBERON_0006588` -#### Removed -- [round ligament of liver](http://purl.obolibrary.org/obo/UBERON_0006588) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [round ligament of liver](http://purl.obolibrary.org/obo/UBERON_0006588) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### ruminant stomach `http://purl.obolibrary.org/obo/UBERON_0007366` -#### Removed -- [ruminant stomach](http://purl.obolibrary.org/obo/UBERON_0007366) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9845](http://purl.obolibrary.org/obo/NCBITaxon_9845) - -#### Added -- [ruminant stomach](http://purl.obolibrary.org/obo/UBERON_0007366) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9845](http://purl.obolibrary.org/obo/NCBITaxon_9845) - - -### saccus vasculosus `http://purl.obolibrary.org/obo/UBERON_0034943` -#### Removed -- [saccus vasculosus](http://purl.obolibrary.org/obo/UBERON_0034943) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - -#### Added -- [saccus vasculosus](http://purl.obolibrary.org/obo/UBERON_0034943) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - -### saliva-secreting gland `http://purl.obolibrary.org/obo/UBERON_0001044` -#### Removed -- [saliva-secreting gland](http://purl.obolibrary.org/obo/UBERON_0001044) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [saliva-secreting gland](http://purl.obolibrary.org/obo/UBERON_0001044) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### sallet `http://purl.obolibrary.org/obo/UBERON_0018374` -#### Removed -- [sallet](http://purl.obolibrary.org/obo/UBERON_0018374) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8504](http://purl.obolibrary.org/obo/NCBITaxon_8504) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:9780387714691" - -#### Added -- [sallet](http://purl.obolibrary.org/obo/UBERON_0018374) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8504](http://purl.obolibrary.org/obo/NCBITaxon_8504) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:9780387714691" - - -### salt gland `http://purl.obolibrary.org/obo/UBERON_0004758` -#### Removed -- [salt gland](http://purl.obolibrary.org/obo/UBERON_0004758) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [salt gland](http://purl.obolibrary.org/obo/UBERON_0004758) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### sartorius muscle `http://purl.obolibrary.org/obo/UBERON_0001373` -#### Removed -- [sartorius muscle](http://purl.obolibrary.org/obo/UBERON_0001373) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [sartorius muscle](http://purl.obolibrary.org/obo/UBERON_0001373) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### scale `http://purl.obolibrary.org/obo/UBERON_0002542` -#### Removed -- [scale](http://purl.obolibrary.org/obo/UBERON_0002542) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [scale](http://purl.obolibrary.org/obo/UBERON_0002542) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### scleral sesamoid bone `http://purl.obolibrary.org/obo/UBERON_0010311` -#### Removed -- [scleral sesamoid bone](http://purl.obolibrary.org/obo/UBERON_0010311) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_30458](http://purl.obolibrary.org/obo/NCBITaxon_30458) - -#### Added -- [scleral sesamoid bone](http://purl.obolibrary.org/obo/UBERON_0010311) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_30458](http://purl.obolibrary.org/obo/NCBITaxon_30458) - - -### scleral skeletal element `http://purl.obolibrary.org/obo/UBERON_0010296` -#### Removed -- [scleral skeletal element](http://purl.obolibrary.org/obo/UBERON_0010296) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:17051547" - -#### Added -- [scleral skeletal element](http://purl.obolibrary.org/obo/UBERON_0010296) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:17051547" - - -### sclerotome `http://purl.obolibrary.org/obo/UBERON_0003089` -#### Removed -- [sclerotome](http://purl.obolibrary.org/obo/UBERON_0003089) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "VHOG:0000680" - -#### Added -- [sclerotome](http://purl.obolibrary.org/obo/UBERON_0003089) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "VHOG:0000680" - - -### scolex `http://purl.obolibrary.org/obo/UBERON_0015119` -#### Removed -- [scolex](http://purl.obolibrary.org/obo/UBERON_0015119) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6199](http://purl.obolibrary.org/obo/NCBITaxon_6199) - -#### Added -- [scolex](http://purl.obolibrary.org/obo/UBERON_0015119) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6199](http://purl.obolibrary.org/obo/NCBITaxon_6199) - - -### scrotum `http://purl.obolibrary.org/obo/UBERON_0001300` -#### Removed -- [scrotum](http://purl.obolibrary.org/obo/UBERON_0001300) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32525](http://purl.obolibrary.org/obo/NCBITaxon_32525) - -#### Added -- [scrotum](http://purl.obolibrary.org/obo/UBERON_0001300) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32525](http://purl.obolibrary.org/obo/NCBITaxon_32525) - - -### sebaceous gland `http://purl.obolibrary.org/obo/UBERON_0001821` -#### Removed -- [sebaceous gland](http://purl.obolibrary.org/obo/UBERON_0001821) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "VHOG" - -#### Added -- [sebaceous gland](http://purl.obolibrary.org/obo/UBERON_0001821) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "VHOG" - - -### second instar larva `http://purl.obolibrary.org/obo/UBERON_0018382` -#### Removed -- [second instar larva](http://purl.obolibrary.org/obo/UBERON_0018382) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - -#### Added -- [second instar larva](http://purl.obolibrary.org/obo/UBERON_0018382) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - -### secondary heart field `http://purl.obolibrary.org/obo/UBERON_0009889` -#### Removed -- [secondary heart field](http://purl.obolibrary.org/obo/UBERON_0009889) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [secondary heart field](http://purl.obolibrary.org/obo/UBERON_0009889) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### secondary palate `http://purl.obolibrary.org/obo/UBERON_0001716` -#### Removed -- [secondary palate](http://purl.obolibrary.org/obo/UBERON_0001716) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - -#### Added -- [secondary palate](http://purl.obolibrary.org/obo/UBERON_0001716) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - -### sensory corpuscle `http://purl.obolibrary.org/obo/UBERON_8900000` - -#### Added -- [sensory corpuscle](http://purl.obolibrary.org/obo/UBERON_8900000) [label](http://www.w3.org/2000/01/rdf-schema#label) "sensory corpuscle" - -- [sensory corpuscle](http://purl.obolibrary.org/obo/UBERON_8900000) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A mechanosensory complex in the terminal end of some nerves that forms a corpuscle. It consists of one or more neuronal terminations and associated non-neuronal cells." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:35356056" - -- [sensory corpuscle](http://purl.obolibrary.org/obo/UBERON_8900000) [hasRelatedSynonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "COEC" - - [hasSynonymType](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [OMO_0003000](http://purl.obolibrary.org/obo/OMO_0003000) - - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:35356056" - -- [sensory corpuscle](http://purl.obolibrary.org/obo/UBERON_8900000) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8900000" - -- [sensory corpuscle](http://purl.obolibrary.org/obo/UBERON_8900000) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "cutaneous end-organ complex" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:35356056" - -- [sensory corpuscle](http://purl.obolibrary.org/obo/UBERON_8900000) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://www.wikidata.org/entity/Q126363978" - -- [sensory corpuscle](http://purl.obolibrary.org/obo/UBERON_8900000) [contributor](http://purl.org/dc/terms/contributor) [0000-0003-2473-2313](https://orcid.org/0000-0003-2473-2313) - -- [sensory corpuscle](http://purl.obolibrary.org/obo/UBERON_8900000) [hasOBONamespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" - -- [sensory corpuscle](http://purl.obolibrary.org/obo/UBERON_8900000) [date](http://purl.org/dc/terms/date) "2024-06-12T13:51:05Z" - -- Class: [sensory corpuscle](http://purl.obolibrary.org/obo/UBERON_8900000) - -- [sensory corpuscle](http://purl.obolibrary.org/obo/UBERON_8900000) SubClassOf [mechanoreceptor](http://purl.obolibrary.org/obo/UBERON_0012449) - - -### septal organ of Masera `http://purl.obolibrary.org/obo/UBERON_0015246` -#### Removed -- [septal organ of Masera](http://purl.obolibrary.org/obo/UBERON_0015246) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9989](http://purl.obolibrary.org/obo/NCBITaxon_9989) - -#### Added -- [septal organ of Masera](http://purl.obolibrary.org/obo/UBERON_0015246) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9989](http://purl.obolibrary.org/obo/NCBITaxon_9989) - - -### serratus muscle `http://purl.obolibrary.org/obo/UBERON_0014835` -#### Removed -- [serratus muscle](http://purl.obolibrary.org/obo/UBERON_0014835) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [serratus muscle](http://purl.obolibrary.org/obo/UBERON_0014835) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### sesamoid bone of the peroneus longus muscle `http://purl.obolibrary.org/obo/UBERON_0012104` -#### Removed -- [sesamoid bone of the peroneus longus muscle](http://purl.obolibrary.org/obo/UBERON_0012104) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9443](http://purl.obolibrary.org/obo/NCBITaxon_9443) - -#### Added -- [sesamoid bone of the peroneus longus muscle](http://purl.obolibrary.org/obo/UBERON_0012104) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9443](http://purl.obolibrary.org/obo/NCBITaxon_9443) - - -### sesamoid element `http://purl.obolibrary.org/obo/UBERON_0013631` -#### Removed -- [sesamoid element](http://purl.obolibrary.org/obo/UBERON_0013631) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [sesamoid element](http://purl.obolibrary.org/obo/UBERON_0013631) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### shell `http://purl.obolibrary.org/obo/UBERON_0006612` -#### Removed -- [shell](http://purl.obolibrary.org/obo/UBERON_0006612) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [shell](http://purl.obolibrary.org/obo/UBERON_0006612) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### shoulder `http://purl.obolibrary.org/obo/UBERON_0001467` -#### Removed -- [shoulder](http://purl.obolibrary.org/obo/UBERON_0001467) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - -#### Added -- [shoulder](http://purl.obolibrary.org/obo/UBERON_0001467) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - -### sigmoid process of tympanic bone `http://purl.obolibrary.org/obo/UBERON_0013174` -#### Removed -- [sigmoid process of tympanic bone](http://purl.obolibrary.org/obo/UBERON_0013174) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9721](http://purl.obolibrary.org/obo/NCBITaxon_9721) - -#### Added -- [sigmoid process of tympanic bone](http://purl.obolibrary.org/obo/UBERON_0013174) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9721](http://purl.obolibrary.org/obo/NCBITaxon_9721) - - -### silk `http://purl.obolibrary.org/obo/UBERON_0012245` -#### Removed -- [silk](http://purl.obolibrary.org/obo/UBERON_0012245) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - -#### Added -- [silk](http://purl.obolibrary.org/obo/UBERON_0012245) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - -### silk gland `http://purl.obolibrary.org/obo/UBERON_0011146` -#### Removed -- [silk gland](http://purl.obolibrary.org/obo/UBERON_0011146) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - -#### Added -- [silk gland](http://purl.obolibrary.org/obo/UBERON_0011146) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6656](http://purl.obolibrary.org/obo/NCBITaxon_6656) - - -### simian shelf `http://purl.obolibrary.org/obo/UBERON_0013450` -#### Removed -- [simian shelf](http://purl.obolibrary.org/obo/UBERON_0013450) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_314295](http://purl.obolibrary.org/obo/NCBITaxon_314295) - -#### Added -- [simian shelf](http://purl.obolibrary.org/obo/UBERON_0013450) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_314295](http://purl.obolibrary.org/obo/NCBITaxon_314295) - - -### siphon primordium `http://purl.obolibrary.org/obo/UBERON_0009894` -#### Removed -- [siphon primordium](http://purl.obolibrary.org/obo/UBERON_0009894) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) - -#### Added -- [siphon primordium](http://purl.obolibrary.org/obo/UBERON_0009894) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) - - -### skeletal muscle organ, vertebrate `http://purl.obolibrary.org/obo/UBERON_0014892` -#### Removed -- [skeletal muscle organ, vertebrate](http://purl.obolibrary.org/obo/UBERON_0014892) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [skeletal muscle organ, vertebrate](http://purl.obolibrary.org/obo/UBERON_0014892) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### skull `http://purl.obolibrary.org/obo/UBERON_0003129` -#### Removed -- [skull](http://purl.obolibrary.org/obo/UBERON_0003129) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_89593](http://purl.obolibrary.org/obo/NCBITaxon_89593) - -#### Added -- [skull](http://purl.obolibrary.org/obo/UBERON_0003129) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_89593](http://purl.obolibrary.org/obo/NCBITaxon_89593) - - -### small intestine `http://purl.obolibrary.org/obo/UBERON_0002108` -#### Removed -- [small intestine](http://purl.obolibrary.org/obo/UBERON_0002108) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [small intestine](http://purl.obolibrary.org/obo/UBERON_0002108) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### smegma `http://purl.obolibrary.org/obo/UBERON_0003670` -#### Removed -- [smegma](http://purl.obolibrary.org/obo/UBERON_0003670) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [smegma](http://purl.obolibrary.org/obo/UBERON_0003670) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### snake venom `http://purl.obolibrary.org/obo/UBERON_0013076` -#### Removed -- [snake venom](http://purl.obolibrary.org/obo/UBERON_0013076) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8570](http://purl.obolibrary.org/obo/NCBITaxon_8570) - -#### Added -- [snake venom](http://purl.obolibrary.org/obo/UBERON_0013076) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8570](http://purl.obolibrary.org/obo/NCBITaxon_8570) - - -### snake venom gland `http://purl.obolibrary.org/obo/UBERON_0008976` -#### Removed -- [snake venom gland](http://purl.obolibrary.org/obo/UBERON_0008976) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8570](http://purl.obolibrary.org/obo/NCBITaxon_8570) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0073040584" - -#### Added -- [snake venom gland](http://purl.obolibrary.org/obo/UBERON_0008976) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8570](http://purl.obolibrary.org/obo/NCBITaxon_8570) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0073040584" - - -### somite `http://purl.obolibrary.org/obo/UBERON_0002329` -#### Removed -- [somite](http://purl.obolibrary.org/obo/UBERON_0002329) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "GOTAX:0000352" - -#### Added -- [somite](http://purl.obolibrary.org/obo/UBERON_0002329) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "GOTAX:0000352" - - -### spermaceti `http://purl.obolibrary.org/obo/UBERON_0009755` -#### Removed -- [spermaceti](http://purl.obolibrary.org/obo/UBERON_0009755) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9753](http://purl.obolibrary.org/obo/NCBITaxon_9753) - -#### Added -- [spermaceti](http://purl.obolibrary.org/obo/UBERON_0009755) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9753](http://purl.obolibrary.org/obo/NCBITaxon_9753) - - -### spermathecum `http://purl.obolibrary.org/obo/UBERON_0000994` -#### Removed -- [spermathecum](http://purl.obolibrary.org/obo/UBERON_0000994) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [spermathecum](http://purl.obolibrary.org/obo/UBERON_0000994) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### spine appendage `http://purl.obolibrary.org/obo/UBERON_0008260` -#### Removed -- [spine appendage](http://purl.obolibrary.org/obo/UBERON_0008260) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [spine appendage](http://purl.obolibrary.org/obo/UBERON_0008260) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### spiracle (sensu Vertebrata) `http://purl.obolibrary.org/obo/UBERON_0010019` -#### Removed -- [spiracle (sensu Vertebrata)](http://purl.obolibrary.org/obo/UBERON_0010019) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [spiracle (sensu Vertebrata)](http://purl.obolibrary.org/obo/UBERON_0010019) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### spiral colon `http://purl.obolibrary.org/obo/UBERON_0010239` -#### Removed -- [spiral colon](http://purl.obolibrary.org/obo/UBERON_0010239) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_91561](http://purl.obolibrary.org/obo/NCBITaxon_91561) - -#### Added -- [spiral colon](http://purl.obolibrary.org/obo/UBERON_0010239) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_91561](http://purl.obolibrary.org/obo/NCBITaxon_91561) - - -### spiral organ of cochlea `http://purl.obolibrary.org/obo/UBERON_0002227` -#### Removed -- [spiral organ of cochlea](http://purl.obolibrary.org/obo/UBERON_0002227) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "https://github.com/obophenotype/uberon/issues/387" - -#### Added -- [spiral organ of cochlea](http://purl.obolibrary.org/obo/UBERON_0002227) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "https://github.com/obophenotype/uberon/issues/387" - - -### spiral valve of conus arteriosus `http://purl.obolibrary.org/obo/UBERON_0010018` -#### Removed -- [spiral valve of conus arteriosus](http://purl.obolibrary.org/obo/UBERON_0010018) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) - - [evidence](http://www.geneontology.org/formats/oboInOwl#evidence) "NAS" - -#### Added -- [spiral valve of conus arteriosus](http://purl.obolibrary.org/obo/UBERON_0010018) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) - - [evidence](http://www.geneontology.org/formats/oboInOwl#evidence) "NAS" - - -### spiral valve of intestine `http://purl.obolibrary.org/obo/UBERON_0010016` -#### Removed -- [spiral valve of intestine](http://purl.obolibrary.org/obo/UBERON_0010016) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [spiral valve of intestine](http://purl.obolibrary.org/obo/UBERON_0010016) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### spleen `http://purl.obolibrary.org/obo/UBERON_0002106` -#### Removed -- [spleen](http://purl.obolibrary.org/obo/UBERON_0002106) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "multiple sources - true spleen appear in jawed vertebrates" - -#### Added -- [spleen](http://purl.obolibrary.org/obo/UBERON_0002106) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "multiple sources - true spleen appear in jawed vertebrates" - - -### spleen primordium `http://purl.obolibrary.org/obo/UBERON_0006293` -#### Removed -- [spleen primordium](http://purl.obolibrary.org/obo/UBERON_0006293) SubClassOf [embryonic tissue](http://purl.obolibrary.org/obo/UBERON_0005291) - -- [spleen primordium](http://purl.obolibrary.org/obo/UBERON_0006293) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [dorsal mesogastrium](http://purl.obolibrary.org/obo/UBERON_0005602) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "EHDAA2-modified" - -- [spleen primordium](http://purl.obolibrary.org/obo/UBERON_0006293) SubClassOf [embryonic structure](http://purl.obolibrary.org/obo/UBERON_0002050) - - - -### splenic sinusoid `http://purl.obolibrary.org/obo/UBERON_0003910` -#### Removed -- [splenic sinusoid](http://purl.obolibrary.org/obo/UBERON_0003910) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [splenic sinusoid](http://purl.obolibrary.org/obo/UBERON_0003910) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### spongiotrophoblast layer `http://purl.obolibrary.org/obo/UBERON_0004021` -#### Removed -- [spongiotrophoblast layer](http://purl.obolibrary.org/obo/UBERON_0004021) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9989](http://purl.obolibrary.org/obo/NCBITaxon_9989) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "MP:0004255" - - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:11433360" - -#### Added -- [spongiotrophoblast layer](http://purl.obolibrary.org/obo/UBERON_0004021) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9989](http://purl.obolibrary.org/obo/NCBITaxon_9989) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "MP:0004255" - - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:11433360" - - -### stapes bone `http://purl.obolibrary.org/obo/UBERON_0001687` -#### Removed -- [stapes bone](http://purl.obolibrary.org/obo/UBERON_0001687) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [stapes bone](http://purl.obolibrary.org/obo/UBERON_0001687) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### sternum `http://purl.obolibrary.org/obo/UBERON_0000975` -#### Removed -- [sternum](http://purl.obolibrary.org/obo/UBERON_0000975) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0073040584" - -#### Added -- [sternum](http://purl.obolibrary.org/obo/UBERON_0000975) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32523](http://purl.obolibrary.org/obo/NCBITaxon_32523) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0073040584" - - -### stomach `http://purl.obolibrary.org/obo/UBERON_0000945` -#### Removed -- [stomach](http://purl.obolibrary.org/obo/UBERON_0000945) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0073040584" - - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "absent in lampreys and hagfishes" - -#### Added -- [stomach](http://purl.obolibrary.org/obo/UBERON_0000945) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0073040584" - - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "absent in lampreys and hagfishes" - - -### stomochord `http://purl.obolibrary.org/obo/UBERON_0011288` -#### Removed -- [stomochord](http://purl.obolibrary.org/obo/UBERON_0011288) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_10219](http://purl.obolibrary.org/obo/NCBITaxon_10219) - -#### Added -- [stomochord](http://purl.obolibrary.org/obo/UBERON_0011288) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_10219](http://purl.obolibrary.org/obo/NCBITaxon_10219) - - -### stomodeum `http://purl.obolibrary.org/obo/UBERON_0000930` -#### Removed -- [stomodeum](http://purl.obolibrary.org/obo/UBERON_0000930) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [stomodeum](http://purl.obolibrary.org/obo/UBERON_0000930) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### strand of hair `http://purl.obolibrary.org/obo/UBERON_0001037` -#### Removed -- [strand of hair](http://purl.obolibrary.org/obo/UBERON_0001037) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [strand of hair](http://purl.obolibrary.org/obo/UBERON_0001037) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### strand of wool `http://purl.obolibrary.org/obo/UBERON_0013196` -#### Removed -- [strand of wool](http://purl.obolibrary.org/obo/UBERON_0013196) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9963](http://purl.obolibrary.org/obo/NCBITaxon_9963) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "cjm" - -#### Added -- [strand of wool](http://purl.obolibrary.org/obo/UBERON_0013196) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9963](http://purl.obolibrary.org/obo/NCBITaxon_9963) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "cjm" - - -### stroma `http://purl.obolibrary.org/obo/UBERON_0003891` -#### Removed -- [stroma](http://purl.obolibrary.org/obo/UBERON_0003891) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - -#### Added -- [stroma](http://purl.obolibrary.org/obo/UBERON_0003891) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6072](http://purl.obolibrary.org/obo/NCBITaxon_6072) - - -### styliform element `http://purl.obolibrary.org/obo/UBERON_0035561` -#### Removed -- [styliform element](http://purl.obolibrary.org/obo/UBERON_0035561) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - -#### Added -- [styliform element](http://purl.obolibrary.org/obo/UBERON_0035561) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - -### subdivision of skeletal system `http://purl.obolibrary.org/obo/UBERON_0000075` -#### Removed -- [subdivision of skeletal system](http://purl.obolibrary.org/obo/UBERON_0000075) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [subdivision of skeletal system](http://purl.obolibrary.org/obo/UBERON_0000075) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### subepithelial connective tissue of prostatic gland `http://purl.obolibrary.org/obo/UBERON_0015131` - -#### Added -- [subepithelial connective tissue of prostatic gland](http://purl.obolibrary.org/obo/UBERON_0015131) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [subepithelial connective tissue of prostatic gland](http://purl.obolibrary.org/obo/UBERON_0015131) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - - -### sublingua `http://purl.obolibrary.org/obo/UBERON_0011268` -#### Removed -- [sublingua](http://purl.obolibrary.org/obo/UBERON_0011268) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [sublingua](http://purl.obolibrary.org/obo/UBERON_0011268) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9347](http://purl.obolibrary.org/obo/NCBITaxon_9347) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### sublingual gland `http://purl.obolibrary.org/obo/UBERON_0001832` -#### Removed -- [sublingual gland](http://purl.obolibrary.org/obo/UBERON_0001832) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - -#### Added -- [sublingual gland](http://purl.obolibrary.org/obo/UBERON_0001832) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - -### submandibular gland `http://purl.obolibrary.org/obo/UBERON_0001736` -#### Removed -- [submandibular gland](http://purl.obolibrary.org/obo/UBERON_0001736) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "https://orcid.org/0000-0003-3308-6245" - -#### Added -- [submandibular gland](http://purl.obolibrary.org/obo/UBERON_0001736) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "https://orcid.org/0000-0003-3308-6245" - - -### submucosa `http://purl.obolibrary.org/obo/UBERON_0000009` -#### Removed -- [submucosa](http://purl.obolibrary.org/obo/UBERON_0000009) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [submucosa](http://purl.obolibrary.org/obo/UBERON_0000009) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### suborbital shelf `http://purl.obolibrary.org/obo/UBERON_0018361` -#### Removed -- [suborbital shelf](http://purl.obolibrary.org/obo/UBERON_0018361) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_119203](http://purl.obolibrary.org/obo/NCBITaxon_119203) - -#### Added -- [suborbital shelf](http://purl.obolibrary.org/obo/UBERON_0018361) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_119203](http://purl.obolibrary.org/obo/NCBITaxon_119203) - - -### subpretectal complex of Aves `http://purl.obolibrary.org/obo/UBERON_0035588` -#### Removed -- [subpretectal complex of Aves](http://purl.obolibrary.org/obo/UBERON_0035588) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - -#### Added -- [subpretectal complex of Aves](http://purl.obolibrary.org/obo/UBERON_0035588) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - - -### subserosa `http://purl.obolibrary.org/obo/UBERON_0012375` -#### Removed -- [subserosa](http://purl.obolibrary.org/obo/UBERON_0012375) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [subserosa](http://purl.obolibrary.org/obo/UBERON_0012375) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### sulcus of brain `http://purl.obolibrary.org/obo/UBERON_0013118` -#### Removed -- [sulcus of brain](http://purl.obolibrary.org/obo/UBERON_0013118) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [sulcus of brain](http://purl.obolibrary.org/obo/UBERON_0013118) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### supralabial gland `http://purl.obolibrary.org/obo/UBERON_0010049` -#### Removed -- [supralabial gland](http://purl.obolibrary.org/obo/UBERON_0010049) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - -#### Added -- [supralabial gland](http://purl.obolibrary.org/obo/UBERON_0010049) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - -### supraneural body `http://purl.obolibrary.org/obo/UBERON_0009102` -#### Removed -- [supraneural body](http://purl.obolibrary.org/obo/UBERON_0009102) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7745](http://purl.obolibrary.org/obo/NCBITaxon_7745) - -#### Added -- [supraneural body](http://purl.obolibrary.org/obo/UBERON_0009102) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7745](http://purl.obolibrary.org/obo/NCBITaxon_7745) - - -### supraoptic nucleus `http://purl.obolibrary.org/obo/UBERON_0001929` -#### Removed -- [supraoptic nucleus](http://purl.obolibrary.org/obo/UBERON_0001929) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [supraoptic nucleus](http://purl.obolibrary.org/obo/UBERON_0001929) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### supraorbital gland `http://purl.obolibrary.org/obo/UBERON_0013233` -#### Removed -- [supraorbital gland](http://purl.obolibrary.org/obo/UBERON_0013233) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [supraorbital gland](http://purl.obolibrary.org/obo/UBERON_0013233) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### surface of occiput `http://purl.obolibrary.org/obo/UBERON_0006054` -#### Removed -- [surface of occiput](http://purl.obolibrary.org/obo/UBERON_0006054) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [surface of occiput](http://purl.obolibrary.org/obo/UBERON_0006054) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### sweat gland `http://purl.obolibrary.org/obo/UBERON_0001820` -#### Removed -- [sweat gland](http://purl.obolibrary.org/obo/UBERON_0001820) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [sweat gland](http://purl.obolibrary.org/obo/UBERON_0001820) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [sweat gland](http://purl.obolibrary.org/obo/UBERON_0001820) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [sweat gland](http://purl.obolibrary.org/obo/UBERON_0001820) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### swim bladder `http://purl.obolibrary.org/obo/UBERON_0006860` -#### Removed -- [swim bladder](http://purl.obolibrary.org/obo/UBERON_0006860) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7898](http://purl.obolibrary.org/obo/NCBITaxon_7898) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [swim bladder](http://purl.obolibrary.org/obo/UBERON_0006860) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7898](http://purl.obolibrary.org/obo/NCBITaxon_7898) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### synovial joint `http://purl.obolibrary.org/obo/UBERON_0002217` -#### Removed -- [synovial joint](http://purl.obolibrary.org/obo/UBERON_0002217) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [synovial joint](http://purl.obolibrary.org/obo/UBERON_0002217) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### syrinx organ `http://purl.obolibrary.org/obo/UBERON_0009074` -#### Removed -- [syrinx organ](http://purl.obolibrary.org/obo/UBERON_0009074) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [syrinx organ](http://purl.obolibrary.org/obo/UBERON_0009074) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### tail `http://purl.obolibrary.org/obo/UBERON_0002415` -#### Removed -- [tail](http://purl.obolibrary.org/obo/UBERON_0002415) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [tail](http://purl.obolibrary.org/obo/UBERON_0002415) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### tail fold of embryonic disc `http://purl.obolibrary.org/obo/UBERON_0009747` -#### Removed -- [tail fold of embryonic disc](http://purl.obolibrary.org/obo/UBERON_0009747) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [tail fold of embryonic disc](http://purl.obolibrary.org/obo/UBERON_0009747) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### tarsometatarsus `http://purl.obolibrary.org/obo/UBERON_0008195` -#### Removed -- [tarsometatarsus](http://purl.obolibrary.org/obo/UBERON_0008195) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8492](http://purl.obolibrary.org/obo/NCBITaxon_8492) - -#### Added -- [tarsometatarsus](http://purl.obolibrary.org/obo/UBERON_0008195) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8492](http://purl.obolibrary.org/obo/NCBITaxon_8492) - - -### tectal gray nucleus (Testudines) `http://purl.obolibrary.org/obo/UBERON_0035585` -#### Removed -- [tectal gray nucleus (Testudines)](http://purl.obolibrary.org/obo/UBERON_0035585) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8459](http://purl.obolibrary.org/obo/NCBITaxon_8459) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - -#### Added -- [tectal gray nucleus (Testudines)](http://purl.obolibrary.org/obo/UBERON_0035585) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8459](http://purl.obolibrary.org/obo/NCBITaxon_8459) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - - -### tectal plate `http://purl.obolibrary.org/obo/UBERON_0006777` -#### Removed -- [tectal plate](http://purl.obolibrary.org/obo/UBERON_0006777) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - -#### Added -- [tectal plate](http://purl.obolibrary.org/obo/UBERON_0006777) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - -### telencephalic song nucleus HVC `http://purl.obolibrary.org/obo/UBERON_0035785` -#### Removed -- [telencephalic song nucleus HVC](http://purl.obolibrary.org/obo/UBERON_0035785) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9126](http://purl.obolibrary.org/obo/NCBITaxon_9126) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "GOC:mr" - -#### Added -- [telencephalic song nucleus HVC](http://purl.obolibrary.org/obo/UBERON_0035785) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9126](http://purl.obolibrary.org/obo/NCBITaxon_9126) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "GOC:mr" - - -### temporal fenestra `http://purl.obolibrary.org/obo/UBERON_0014459` -#### Removed -- [temporal fenestra](http://purl.obolibrary.org/obo/UBERON_0014459) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "not present in earliest amniotes" - - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [temporal fenestra](http://purl.obolibrary.org/obo/UBERON_0014459) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - [notes](http://www.geneontology.org/formats/oboInOwl#notes) "not present in earliest amniotes" - - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### temporal part of head `http://purl.obolibrary.org/obo/UBERON_0003251` -#### Removed -- [temporal part of head](http://purl.obolibrary.org/obo/UBERON_0003251) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [temporal part of head](http://purl.obolibrary.org/obo/UBERON_0003251) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### tendon `http://purl.obolibrary.org/obo/UBERON_0000043` -#### Removed -- [tendon](http://purl.obolibrary.org/obo/UBERON_0000043) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [tendon](http://purl.obolibrary.org/obo/UBERON_0000043) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### thagomizer `http://purl.obolibrary.org/obo/UBERON_4100121` -#### Removed -- [thagomizer](http://purl.obolibrary.org/obo/UBERON_4100121) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_436486](http://purl.obolibrary.org/obo/NCBITaxon_436486) - -#### Added -- [thagomizer](http://purl.obolibrary.org/obo/UBERON_4100121) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_436486](http://purl.obolibrary.org/obo/NCBITaxon_436486) - - -### thymus `http://purl.obolibrary.org/obo/UBERON_0002370` -#### Removed -- [thymus](http://purl.obolibrary.org/obo/UBERON_0002370) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "multiple sources - true thymus appears in jawed vertebrates" - -#### Added -- [thymus](http://purl.obolibrary.org/obo/UBERON_0002370) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7776](http://purl.obolibrary.org/obo/NCBITaxon_7776) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "multiple sources - true thymus appears in jawed vertebrates" - - -### thyrohyoid ligament `http://purl.obolibrary.org/obo/UBERON_0010921` -#### Removed -- [thyrohyoid ligament](http://purl.obolibrary.org/obo/UBERON_0010921) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [thyrohyoid ligament](http://purl.obolibrary.org/obo/UBERON_0010921) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### thyroid gland `http://purl.obolibrary.org/obo/UBERON_0002046` -#### Removed -- [thyroid gland](http://purl.obolibrary.org/obo/UBERON_0002046) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia:Endostyle" - -#### Added -- [thyroid gland](http://purl.obolibrary.org/obo/UBERON_0002046) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7711](http://purl.obolibrary.org/obo/NCBITaxon_7711) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia:Endostyle" - - -### tibiotarsus `http://purl.obolibrary.org/obo/UBERON_0008194` -#### Removed -- [tibiotarsus](http://purl.obolibrary.org/obo/UBERON_0008194) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8492](http://purl.obolibrary.org/obo/NCBITaxon_8492) - -#### Added -- [tibiotarsus](http://purl.obolibrary.org/obo/UBERON_0008194) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8492](http://purl.obolibrary.org/obo/NCBITaxon_8492) - - -### tooth-like structure `http://purl.obolibrary.org/obo/UBERON_0003913` -#### Removed -- [tooth-like structure](http://purl.obolibrary.org/obo/UBERON_0003913) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [tooth-like structure](http://purl.obolibrary.org/obo/UBERON_0003913) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### torus pylorus `http://purl.obolibrary.org/obo/UBERON_0010238` -#### Removed -- [torus pylorus](http://purl.obolibrary.org/obo/UBERON_0010238) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [torus pylorus](http://purl.obolibrary.org/obo/UBERON_0010238) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### trachea `http://purl.obolibrary.org/obo/UBERON_0003126` -#### Removed -- [trachea](http://purl.obolibrary.org/obo/UBERON_0003126) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [trachea](http://purl.obolibrary.org/obo/UBERON_0003126) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### tracheal diverticulum `http://purl.obolibrary.org/obo/UBERON_0006303` -#### Removed -- [tracheal diverticulum](http://purl.obolibrary.org/obo/UBERON_0006303) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [tracheal diverticulum](http://purl.obolibrary.org/obo/UBERON_0006303) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### transitional glandular epithelium of anorectum `http://purl.obolibrary.org/obo/UBERON_8410005` - -#### Added -- [transitional glandular epithelium of anorectum](http://purl.obolibrary.org/obo/UBERON_8410005) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [transitional glandular epithelium of anorectum](http://purl.obolibrary.org/obo/UBERON_8410005) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - - -### transudate `http://purl.obolibrary.org/obo/UBERON_0007779` -#### Removed -- [transudate](http://purl.obolibrary.org/obo/UBERON_0007779) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [transudate](http://purl.obolibrary.org/obo/UBERON_0007779) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### trochanter `http://purl.obolibrary.org/obo/UBERON_0000980` -#### Removed -- [trochanter](http://purl.obolibrary.org/obo/UBERON_0000980) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [trochanter](http://purl.obolibrary.org/obo/UBERON_0000980) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### trochophore stage `http://purl.obolibrary.org/obo/UBERON_0014862` -#### Removed -- [trochophore stage](http://purl.obolibrary.org/obo/UBERON_0014862) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33317](http://purl.obolibrary.org/obo/NCBITaxon_33317) - -#### Added -- [trochophore stage](http://purl.obolibrary.org/obo/UBERON_0014862) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33317](http://purl.obolibrary.org/obo/NCBITaxon_33317) - - -### tube foot `http://purl.obolibrary.org/obo/UBERON_0008247` -#### Removed -- [tube foot](http://purl.obolibrary.org/obo/UBERON_0008247) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - -#### Added -- [tube foot](http://purl.obolibrary.org/obo/UBERON_0008247) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - - -### tube foot ampulla `http://purl.obolibrary.org/obo/UBERON_0008252` -#### Removed -- [tube foot ampulla](http://purl.obolibrary.org/obo/UBERON_0008252) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - -#### Added -- [tube foot ampulla](http://purl.obolibrary.org/obo/UBERON_0008252) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - - -### tunica albuginea `http://purl.obolibrary.org/obo/UBERON_0006610` -#### Removed -- [tunica albuginea](http://purl.obolibrary.org/obo/UBERON_0006610) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [tunica albuginea](http://purl.obolibrary.org/obo/UBERON_0006610) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### tunicate postabdomen `http://purl.obolibrary.org/obo/UBERON_0011304` -#### Removed -- [tunicate postabdomen](http://purl.obolibrary.org/obo/UBERON_0011304) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) - -#### Added -- [tunicate postabdomen](http://purl.obolibrary.org/obo/UBERON_0011304) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) - - -### tunicate tunic `http://purl.obolibrary.org/obo/UBERON_0011302` -#### Removed -- [tunicate tunic](http://purl.obolibrary.org/obo/UBERON_0011302) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) - -#### Added -- [tunicate tunic](http://purl.obolibrary.org/obo/UBERON_0011302) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7712](http://purl.obolibrary.org/obo/NCBITaxon_7712) - - -### turbinate bone `http://purl.obolibrary.org/obo/UBERON_0001762` -#### Removed -- [turbinate bone](http://purl.obolibrary.org/obo/UBERON_0001762) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - -#### Added -- [turbinate bone](http://purl.obolibrary.org/obo/UBERON_0001762) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - -### turtle shell `http://purl.obolibrary.org/obo/UBERON_0008271` -#### Removed -- [turtle shell](http://purl.obolibrary.org/obo/UBERON_0008271) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8459](http://purl.obolibrary.org/obo/NCBITaxon_8459) - -#### Added -- [turtle shell](http://purl.obolibrary.org/obo/UBERON_0008271) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8459](http://purl.obolibrary.org/obo/NCBITaxon_8459) - - -### undifferentiated genital tubercle `http://purl.obolibrary.org/obo/UBERON_0005876` -#### Removed -- [undifferentiated genital tubercle](http://purl.obolibrary.org/obo/UBERON_0005876) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "https://github.com/obophenotype/uberon/issues/1230" - -#### Added -- [undifferentiated genital tubercle](http://purl.obolibrary.org/obo/UBERON_0005876) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "https://github.com/obophenotype/uberon/issues/1230" - - -### urethral gland `http://purl.obolibrary.org/obo/UBERON_0001338` -#### Removed -- [urethral gland](http://purl.obolibrary.org/obo/UBERON_0001338) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [urethral gland](http://purl.obolibrary.org/obo/UBERON_0001338) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### urodeum `http://purl.obolibrary.org/obo/UBERON_0012421` -#### Removed -- [urodeum](http://purl.obolibrary.org/obo/UBERON_0012421) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [urodeum](http://purl.obolibrary.org/obo/UBERON_0012421) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### uropygial gland `http://purl.obolibrary.org/obo/UBERON_0007802` -#### Removed -- [uropygial gland](http://purl.obolibrary.org/obo/UBERON_0007802) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - -#### Added -- [uropygial gland](http://purl.obolibrary.org/obo/UBERON_0007802) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Wikipedia" - - -### urorectal septum `http://purl.obolibrary.org/obo/UBERON_0005760` -#### Removed -- [urorectal septum](http://purl.obolibrary.org/obo/UBERON_0005760) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [urorectal septum](http://purl.obolibrary.org/obo/UBERON_0005760) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### uterine tube infundibulum `http://purl.obolibrary.org/obo/UBERON_0003984` -#### Removed -- [uterine tube infundibulum](http://purl.obolibrary.org/obo/UBERON_0003984) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [uterine tube infundibulum](http://purl.obolibrary.org/obo/UBERON_0003984) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### uterine tube magnum `http://purl.obolibrary.org/obo/UBERON_0013516` -#### Removed -- [uterine tube magnum](http://purl.obolibrary.org/obo/UBERON_0013516) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [uterine tube magnum](http://purl.obolibrary.org/obo/UBERON_0013516) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### uterus `http://purl.obolibrary.org/obo/UBERON_0000995` -#### Removed -- [uterus](http://purl.obolibrary.org/obo/UBERON_0000995) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32525](http://purl.obolibrary.org/obo/NCBITaxon_32525) - -#### Added -- [uterus](http://purl.obolibrary.org/obo/UBERON_0000995) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32525](http://purl.obolibrary.org/obo/NCBITaxon_32525) - - -### uterus or analog `http://purl.obolibrary.org/obo/UBERON_0006834` -#### Removed -- [uterus or analog](http://purl.obolibrary.org/obo/UBERON_0006834) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33208](http://purl.obolibrary.org/obo/NCBITaxon_33208) - -#### Added -- [uterus or analog](http://purl.obolibrary.org/obo/UBERON_0006834) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33208](http://purl.obolibrary.org/obo/NCBITaxon_33208) - - -### valvula cerebelli `http://purl.obolibrary.org/obo/UBERON_2000603` -#### Removed -- [valvula cerebelli](http://purl.obolibrary.org/obo/UBERON_2000603) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32443](http://purl.obolibrary.org/obo/NCBITaxon_32443) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:2040726" - - - [contributor](http://www.geneontology.org/formats/oboInOwl#contributor) "michaelerice" - -#### Added -- [valvula cerebelli](http://purl.obolibrary.org/obo/UBERON_2000603) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32443](http://purl.obolibrary.org/obo/NCBITaxon_32443) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "PMID:2040726" - - - [contributor](http://www.geneontology.org/formats/oboInOwl#contributor) "michaelerice" - - -### vas deferens `http://purl.obolibrary.org/obo/UBERON_0001000` -#### Removed -- [vas deferens](http://purl.obolibrary.org/obo/UBERON_0001000) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - -#### Added -- [vas deferens](http://purl.obolibrary.org/obo/UBERON_0001000) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_32524](http://purl.obolibrary.org/obo/NCBITaxon_32524) - - -### velar skeleton `http://purl.obolibrary.org/obo/UBERON_0013653` -#### Removed -- [velar skeleton](http://purl.obolibrary.org/obo/UBERON_0013653) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_89593](http://purl.obolibrary.org/obo/NCBITaxon_89593) - -#### Added -- [velar skeleton](http://purl.obolibrary.org/obo/UBERON_0013653) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_89593](http://purl.obolibrary.org/obo/NCBITaxon_89593) - - -### veliger stage `http://purl.obolibrary.org/obo/UBERON_0014863` -#### Removed -- [veliger stage](http://purl.obolibrary.org/obo/UBERON_0014863) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - -#### Added -- [veliger stage](http://purl.obolibrary.org/obo/UBERON_0014863) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - - -### velum feeding organ `http://purl.obolibrary.org/obo/UBERON_0035960` -#### Removed -- [velum feeding organ](http://purl.obolibrary.org/obo/UBERON_0035960) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6544](http://purl.obolibrary.org/obo/NCBITaxon_6544) - -#### Added -- [velum feeding organ](http://purl.obolibrary.org/obo/UBERON_0035960) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6544](http://purl.obolibrary.org/obo/NCBITaxon_6544) - - -### ventral midline `http://purl.obolibrary.org/obo/UBERON_0009571` -#### Removed -- [ventral midline](http://purl.obolibrary.org/obo/UBERON_0009571) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [ventral midline](http://purl.obolibrary.org/obo/UBERON_0009571) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### ventral pretectal nucleus (sauropsida) `http://purl.obolibrary.org/obo/UBERON_0035584` -#### Removed -- [ventral pretectal nucleus (sauropsida)](http://purl.obolibrary.org/obo/UBERON_0035584) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8457](http://purl.obolibrary.org/obo/NCBITaxon_8457) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - -#### Added -- [ventral pretectal nucleus (sauropsida)](http://purl.obolibrary.org/obo/UBERON_0035584) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8457](http://purl.obolibrary.org/obo/NCBITaxon_8457) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ISBN:0471888893" - - -### ventrobronchus `http://purl.obolibrary.org/obo/UBERON_0009072` -#### Removed -- [ventrobronchus](http://purl.obolibrary.org/obo/UBERON_0009072) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - -#### Added -- [ventrobronchus](http://purl.obolibrary.org/obo/UBERON_0009072) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8782](http://purl.obolibrary.org/obo/NCBITaxon_8782) - - -### ventrum `http://purl.obolibrary.org/obo/UBERON_0013235` -#### Removed -- [ventrum](http://purl.obolibrary.org/obo/UBERON_0013235) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [ventrum](http://purl.obolibrary.org/obo/UBERON_0013235) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### vernix caseosa `http://purl.obolibrary.org/obo/UBERON_0007108` -#### Removed -- [vernix caseosa](http://purl.obolibrary.org/obo/UBERON_0007108) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [vernix caseosa](http://purl.obolibrary.org/obo/UBERON_0007108) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### vertebra cartilage element `http://purl.obolibrary.org/obo/UBERON_0011094` -#### Removed -- [vertebra cartilage element](http://purl.obolibrary.org/obo/UBERON_0011094) SubClassOf [RO_0002387](http://purl.obolibrary.org/obo/RO_0002387) some [vertebra](http://purl.obolibrary.org/obo/UBERON_0002412) - - - -### vertebra pre-cartilage condensation `http://purl.obolibrary.org/obo/UBERON_0011095` -#### Removed -- [vertebra pre-cartilage condensation](http://purl.obolibrary.org/obo/UBERON_0011095) SubClassOf [RO_0002387](http://purl.obolibrary.org/obo/RO_0002387) some [vertebra](http://purl.obolibrary.org/obo/UBERON_0002412) - -#### Added -- [vertebra pre-cartilage condensation](http://purl.obolibrary.org/obo/UBERON_0011095) SubClassOf [RO_0002387](http://purl.obolibrary.org/obo/RO_0002387) some [vertebra cartilage element](http://purl.obolibrary.org/obo/UBERON_0011094) - - -### vertebral column `http://purl.obolibrary.org/obo/UBERON_0001130` -#### Removed -- [vertebral column](http://purl.obolibrary.org/obo/UBERON_0001130) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [vertebral column](http://purl.obolibrary.org/obo/UBERON_0001130) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### vesicular gland `http://purl.obolibrary.org/obo/UBERON_0007194` -#### Removed -- [vesicular gland](http://purl.obolibrary.org/obo/UBERON_0007194) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [vesicular gland](http://purl.obolibrary.org/obo/UBERON_0007194) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### violet gland `http://purl.obolibrary.org/obo/UBERON_0013234` -#### Removed -- [violet gland](http://purl.obolibrary.org/obo/UBERON_0013234) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - -#### Added -- [violet gland](http://purl.obolibrary.org/obo/UBERON_0013234) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_40674](http://purl.obolibrary.org/obo/NCBITaxon_40674) - - -### visceral hump `http://purl.obolibrary.org/obo/UBERON_0008937` -#### Removed -- [visceral hump](http://purl.obolibrary.org/obo/UBERON_0008937) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - -#### Added -- [visceral hump](http://purl.obolibrary.org/obo/UBERON_0008937) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6447](http://purl.obolibrary.org/obo/NCBITaxon_6447) - - -### vitelline duct `http://purl.obolibrary.org/obo/UBERON_0007105` -#### Removed -- [vitelline duct](http://purl.obolibrary.org/obo/UBERON_0007105) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - -#### Added -- [vitelline duct](http://purl.obolibrary.org/obo/UBERON_0007105) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7742](http://purl.obolibrary.org/obo/NCBITaxon_7742) - - -### vitelline membrane `http://purl.obolibrary.org/obo/UBERON_0003125` -#### Removed -- [vitelline membrane](http://purl.obolibrary.org/obo/UBERON_0003125) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [vitelline membrane](http://purl.obolibrary.org/obo/UBERON_0003125) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### vomeronasal organ `http://purl.obolibrary.org/obo/UBERON_0002255` -#### Removed -- [vomeronasal organ](http://purl.obolibrary.org/obo/UBERON_0002255) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) - -#### Added -- [vomeronasal organ](http://purl.obolibrary.org/obo/UBERON_0002255) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) - - -### vomeronasal system `http://purl.obolibrary.org/obo/UBERON_0009954` -#### Removed -- [vomeronasal system](http://purl.obolibrary.org/obo/UBERON_0009954) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) - -#### Added -- [vomeronasal system](http://purl.obolibrary.org/obo/UBERON_0009954) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_8287](http://purl.obolibrary.org/obo/NCBITaxon_8287) - - -### water vascular system `http://purl.obolibrary.org/obo/UBERON_0008251` -#### Removed -- [water vascular system](http://purl.obolibrary.org/obo/UBERON_0008251) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - -#### Added -- [water vascular system](http://purl.obolibrary.org/obo/UBERON_0008251) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - - -### wheel papilla `http://purl.obolibrary.org/obo/UBERON_0012470` -#### Removed -- [wheel papilla](http://purl.obolibrary.org/obo/UBERON_0012470) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - -#### Added -- [wheel papilla](http://purl.obolibrary.org/obo/UBERON_0012470) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_7586](http://purl.obolibrary.org/obo/NCBITaxon_7586) - - -### wing `http://purl.obolibrary.org/obo/UBERON_0000023` -#### Removed -- [wing](http://purl.obolibrary.org/obo/UBERON_0000023) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - -#### Added -- [wing](http://purl.obolibrary.org/obo/UBERON_0000023) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33213](http://purl.obolibrary.org/obo/NCBITaxon_33213) - - -### xenarthrale `http://purl.obolibrary.org/obo/UBERON_0017634` -#### Removed -- [xenarthrale](http://purl.obolibrary.org/obo/UBERON_0017634) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_9348](http://purl.obolibrary.org/obo/NCBITaxon_9348) - -#### Added -- [xenarthrale](http://purl.obolibrary.org/obo/UBERON_0017634) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_9348](http://purl.obolibrary.org/obo/NCBITaxon_9348) - - -### zoea stage `http://purl.obolibrary.org/obo/UBERON_0014857` -#### Removed -- [zoea stage](http://purl.obolibrary.org/obo/UBERON_0014857) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_6657](http://purl.obolibrary.org/obo/NCBITaxon_6657) - -#### Added -- [zoea stage](http://purl.obolibrary.org/obo/UBERON_0014857) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_6657](http://purl.obolibrary.org/obo/NCBITaxon_6657) - - -### zygomatic gland `http://purl.obolibrary.org/obo/UBERON_0010240` -#### Removed -- [zygomatic gland](http://purl.obolibrary.org/obo/UBERON_0010240) SubClassOf [RO_0002160](http://purl.obolibrary.org/obo/RO_0002160) some [NCBITaxon_33554](http://purl.obolibrary.org/obo/NCBITaxon_33554) - -#### Added -- [zygomatic gland](http://purl.obolibrary.org/obo/UBERON_0010240) SubClassOf [RO_0002162](http://purl.obolibrary.org/obo/RO_0002162) some [NCBITaxon_33554](http://purl.obolibrary.org/obo/NCBITaxon_33554) diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index 851d0e7289..13a3aaad06 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2024-11-02") + +Annotation(owl:versionInfo "2024-11-25") Declaration(Class()) Declaration(Class()) @@ -695,7 +695,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -768,8 +767,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2382,7 +2379,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2404,16 +2400,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3095,9 +3082,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3105,8 +3089,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3170,7 +3152,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3250,10 +3231,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4153,7 +4130,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4656,8 +4632,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4755,15 +4729,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4809,7 +4774,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5045,9 +5009,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5546,7 +5507,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5649,14 +5609,11 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5682,7 +5639,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5718,12 +5674,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5930,8 +5882,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5961,7 +5911,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6522,8 +6471,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8095,7 +8042,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8384,7 +8330,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8430,7 +8375,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8522,9 +8466,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8926,8 +8867,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9158,7 +9097,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9447,7 +9385,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9546,10 +9483,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9659,9 +9593,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9749,9 +9680,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9778,7 +9706,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -10911,7 +10838,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -13113,7 +13039,12 @@ AnnotationAssertion(rdfs:seeAlso (database_cross_reference) +AnnotationAssertion( "disease characteristic (MONDO:0021125) has cross-reference (http://www.geneontology.org/formats/oboInOwl#hasDbXref) \"NCIT:C41009\"^^xsd:string") +AnnotationAssertion( "An annotation property that links an ontology entity or a statement to a prefixed identifier or URI.") +AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "database_cross_reference") +AnnotationAssertion(rdfs:label "has cross-reference") # Annotation Property: (has exact synonym) @@ -16063,7 +15994,7 @@ SubClassOf( ObjectSomeValuesFrom( (alpha-hydroxy ketone) -AnnotationAssertion( "An alpha-oxyketone that has a hydroxy group as the alpha-oxy moiety.") +AnnotationAssertion( "A ketone containing a hydroxy group on the alpha-carbon relative to the C=O group.") AnnotationAssertion(Annotation( "Europe PMC") "PMID:15326516") AnnotationAssertion(Annotation( "Europe PMC") "PMID:19908854") AnnotationAssertion(Annotation( "Europe PMC") "PMID:20382022") @@ -16077,8 +16008,8 @@ AnnotationAssertion(Annotation( "CHEBI:139588") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "alpha-hydroxy ketone") -SubClassOf( ) -SubClassOf( ) +SubClassOf( ) +SubClassOf( ) # Class: (primary alpha-hydroxy ketone) @@ -16196,7 +16127,6 @@ AnnotationAssertion( "CHEBI:23212") AnnotationAssertion( "CHEBI:3665") AnnotationAssertion( "CHEBI:41524") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1736748") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:62-49-7") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:62-49-7") AnnotationAssertion( "DrugBank:DB00122") @@ -16316,7 +16246,6 @@ AnnotationAssertion( "CHEBI:22169") AnnotationAssertion( "CHEBI:2387") AnnotationAssertion( "CHEBI:40486") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:506007") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:64-19-7") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:64-19-7") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:64-19-7") @@ -16385,7 +16314,6 @@ AnnotationAssertion( "CHEBI:44701") AnnotationAssertion( "CHEBI:44819") AnnotationAssertion( "CHEBI:5585") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3587155") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7732-18-5") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7732-18-5") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7732-18-5") @@ -16518,7 +16446,6 @@ AnnotationAssertion( "CHEBI:22249") AnnotationAssertion( "CHEBI:2359") AnnotationAssertion( "CHEBI:40938") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:73010") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:56-65-5") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:56-65-5") AnnotationAssertion( "DrugBank:DB00171") @@ -16654,7 +16581,6 @@ SubClassOf( "A monocarboxylic acid anion that is the conjugate base of formic acid. Induces severe metabolic acidosis and ocular injury in human subjects.") AnnotationAssertion( "CHEBI:14276") AnnotationAssertion( "CHEBI:24081") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1901205") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:71-47-6") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:71-47-6") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1006") @@ -16706,7 +16632,6 @@ SubClassOf( "An optically active form of glutamic acid having D-configuration.") AnnotationAssertion( "CHEBI:21023") AnnotationAssertion( "CHEBI:4183") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1723800") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:6893-26-1") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:6893-26-1") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:6893-26-1") @@ -16762,7 +16687,6 @@ AnnotationAssertion( "CHEBI:42825") AnnotationAssertion( "CHEBI:6224") AnnotationAssertion( "BPDB:2297") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1723801") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:56-86-0") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:56-86-0") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:56-86-0") @@ -16830,7 +16754,6 @@ AnnotationAssertion( "CHEBI:44284") AnnotationAssertion( "CHEBI:44404") AnnotationAssertion( "CHEBI:7434") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3587154") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7664-41-7") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7664-41-7") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7664-41-7") @@ -16935,7 +16858,6 @@ AnnotationAssertion( "CHEBI:15135") AnnotationAssertion( "CHEBI:45687") AnnotationAssertion( "CHEBI:9335") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3648446") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:14808-79-8") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:14808-79-8") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:2120") @@ -17060,7 +16982,6 @@ AnnotationAssertion( "CHEBI:40558") AnnotationAssertion( "CHEBI:40825") AnnotationAssertion( "CHEBI:40906") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:93029") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:58-61-7") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:58-61-7") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:58-61-7") @@ -17164,7 +17085,6 @@ AnnotationAssertion( "CHEBI:23011") AnnotationAssertion( "CHEBI:3283") AnnotationAssertion( "CHEBI:48829") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1900390") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:124-38-9") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:124-38-9") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:124-38-9") @@ -17288,7 +17208,6 @@ AnnotationAssertion( "CHEBI:45028") AnnotationAssertion( "CHEBI:8399") AnnotationAssertion(Annotation( "Europe PMC") "AGR:IND44654981") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:2698270") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:126-49-8") AnnotationAssertion( "DrugBank:DB08427") AnnotationAssertion( "HMDB:HMDB0012283") @@ -17369,7 +17288,6 @@ AnnotationAssertion( "CHEBI:22236") AnnotationAssertion( "CHEBI:2470") AnnotationAssertion( "CHEBI:40579") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:608603") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:73-24-5") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:73-24-5") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:73-24-5") @@ -17419,7 +17337,6 @@ AnnotationAssertion( "CHEBI:22703") AnnotationAssertion( "CHEBI:3025") AnnotationAssertion( "CHEBI:41187") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:969212") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:71-43-2") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:71-43-2") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:71-43-2") @@ -17529,7 +17446,6 @@ AnnotationAssertion( "CHEBI:22244") AnnotationAssertion( "CHEBI:2342") AnnotationAssertion( "CHEBI:40553") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:67722") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:20398-34-9") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:58-64-0") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:58-64-0") @@ -17566,7 +17482,6 @@ AnnotationAssertion( "CHEBI:27161") AnnotationAssertion( "CHEBI:46157") AnnotationAssertion( "CHEBI:9767") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:125513") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:61-54-1") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:61-54-1") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:61-54-1") @@ -17608,7 +17523,6 @@ AnnotationAssertion( "CHEBI:14577") AnnotationAssertion( "CHEBI:25180") AnnotationAssertion( "CHEBI:6730") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:205542") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:73-31-4") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:73-31-4") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:73-31-4") @@ -17677,7 +17591,6 @@ AnnotationAssertion( "CHEBI:20318") AnnotationAssertion( "CHEBI:40483") AnnotationAssertion( "BPDB:2298") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:906818") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:56-12-2") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:56-12-2") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:56-12-2") @@ -17755,7 +17668,6 @@ AnnotationAssertion( "CHEBI:13898") AnnotationAssertion( "CHEBI:22870") AnnotationAssertion( "CHEBI:3099") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:74376") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:635-65-4") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:635-65-4") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:411033") @@ -17836,7 +17748,6 @@ AnnotationAssertion( "CHEBI:21067") AnnotationAssertion( "CHEBI:42207") AnnotationAssertion( "CHEBI:4224") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:2804068") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:673-06-3") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:673-06-3") AnnotationAssertion( "DrugBank:DB02556") @@ -17879,7 +17790,6 @@ AnnotationAssertion( "CHEBI:439") AnnotationAssertion( "CHEBI:45786") AnnotationAssertion( "CHEBI:8453") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1915950") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:57-83-0") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:57-83-0") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:57-83-0") @@ -18027,7 +17937,6 @@ SubClassOf( ObjectSomeValuesFrom( "The 7H-tautomer of purine.") AnnotationAssertion( "CHEBI:14968") AnnotationAssertion( "CHEBI:8639") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3200") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:601779") AnnotationAssertion( "HMDB:HMDB0001366") AnnotationAssertion( "KEGG:C15587") @@ -18088,7 +17997,6 @@ AnnotationAssertion( "CHEBI:44885") AnnotationAssertion( "CHEBI:45079") AnnotationAssertion( "CHEBI:6282") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1910408") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:63-91-2") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:63-91-2") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:63-91-2") @@ -18208,7 +18116,6 @@ AnnotationAssertion( "CHEBI:26883") AnnotationAssertion( "CHEBI:45798") AnnotationAssertion( "CHEBI:9461") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1915399") AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3653705") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:58-22-0") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:58-22-0") @@ -18341,7 +18248,6 @@ AnnotationAssertion( "CHEBI:27022") AnnotationAssertion( "CHEBI:44023") AnnotationAssertion( "CHEBI:9624") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:635760") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:108-88-3") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:108-88-3") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:108-88-3") @@ -18424,7 +18330,6 @@ AnnotationAssertion( "CHEBI:12392") AnnotationAssertion( "CHEBI:22834") AnnotationAssertion( "CHEBI:40987") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1917416") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7235-40-7") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7235-40-7") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7235-40-7") @@ -18629,7 +18534,6 @@ AnnotationAssertion( "CHEBI:46070") AnnotationAssertion( "CHEBI:46161") AnnotationAssertion( "CHEBI:6313") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:392441") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:60-18-4") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:60-18-4") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:60-18-4") @@ -18688,7 +18592,6 @@ SubClassOf( ObjectSomeValuesFrom( "A short-chain fatty acid anion that is the conjugate base of butyric acid, obtained by deprotonation of the carboxy group.") AnnotationAssertion( "CHEBI:13924") AnnotationAssertion( "CHEBI:22946") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3601060") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:461-55-2") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:324289") AnnotationAssertion( "KEGG:C00246") @@ -18818,7 +18721,6 @@ AnnotationAssertion( "CHEBI:15277") AnnotationAssertion( "CHEBI:27176") AnnotationAssertion( "CHEBI:9800") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:515881") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:55520-40-6") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:556-03-6") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:27744") @@ -18853,7 +18755,6 @@ SubClassOf( ObjectSomeValuesFrom( "An alpha-amino acid that is glutaric acid bearing a single amino substituent at position 2.") AnnotationAssertion( "CHEBI:24314") AnnotationAssertion( "CHEBI:5431") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1723799") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:617-65-2") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:617-65-2") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:617-65-2") @@ -19044,7 +18945,6 @@ AnnotationAssertion( "CHEBI:24596") AnnotationAssertion( "CHEBI:43187") AnnotationAssertion( "CHEBI:817") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:2012") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:51-45-6") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:51-45-6") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:51-45-6") @@ -19111,7 +19011,6 @@ AnnotationAssertion( "CHEBI:25592") AnnotationAssertion( "CHEBI:258884") AnnotationAssertion( "CHEBI:43725") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:2804840") AnnotationAssertion(Annotation( "ChemIDplus") "Beilstein:4231961") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:51-41-2") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:51-41-2") @@ -19160,7 +19059,6 @@ AnnotationAssertion( "CHEBI:14791") AnnotationAssertion( "CHEBI:45024") AnnotationAssertion( "CHEBI:7793") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3903772") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:14265-44-2") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:14265-44-2") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1997") @@ -19487,7 +19385,7 @@ SubClassOf( ObjectSomeValuesFrom( (NMR chemical shift reference compound) -AnnotationAssertion( "Any compound that produces a peak used to reference an NMR spectrum during data pre-processing.") +AnnotationAssertion( "Any compound that produces a peak used as reference frequency in the delta chemical shift scale.") AnnotationAssertion( "chebi_ontology") AnnotationAssertion(Annotation( "ChEBI") "NMR chemical shift reference compounds") AnnotationAssertion(Annotation( "ChEBI") "NMR chemical shift standard") @@ -20554,7 +20452,6 @@ SubClassOf( (phosphoric acid) AnnotationAssertion( "A phosphorus oxoacid that consists of one oxo and three hydroxy groups joined covalently to a central phosphorus atom.") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1921286") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7664-38-2") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7664-38-2") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7664-38-2") @@ -21272,7 +21169,6 @@ AnnotationAssertion( "CHEBI:22306") AnnotationAssertion( "CHEBI:2563") AnnotationAssertion( "CHEBI:40919") -AnnotationAssertion(Annotation( "ChemIDplus") "Beilstein:3224996") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:52-39-1") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:52-39-1") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:52-39-1") @@ -21341,7 +21237,6 @@ SubClassOf( ObjectSomeValuesFrom( "An aromatic amino acid that is alanine in which one of the methyl hydrogens is substituted by a phenyl group.") AnnotationAssertion( "CHEBI:25984") AnnotationAssertion( "CHEBI:8089") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1910407") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:150-30-1") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:150-30-1") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:50836") @@ -21431,7 +21326,6 @@ AnnotationAssertion( "CHEBI:21111") AnnotationAssertion( "CHEBI:42299") AnnotationAssertion( "CHEBI:4258") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:2212157") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:556-02-5") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:556-02-5") AnnotationAssertion( "DrugBank:DB03839") @@ -21530,7 +21424,6 @@ AnnotationAssertion( "CHEBI:1420") AnnotationAssertion( "CHEBI:26652") AnnotationAssertion( "CHEBI:49894") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:143524") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:50-67-9") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:50-67-9") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1861995") @@ -21591,7 +21484,6 @@ SubClassOf( "CHEBI:27324") AnnotationAssertion( "CHEBI:43817") AnnotationAssertion( "CHEBI:6576") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:2068550") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:127-40-2") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:127-40-2") AnnotationAssertion( "DrugBank:DB00137") @@ -21654,7 +21546,6 @@ SubClassOf( ObjectSomeValuesFrom( "The R-enantiomer of adrenaline. It is a hormone secreted by the adrenal glands resulting in the 'fight-or-flight' response.") AnnotationAssertion( "CHEBI:1942") AnnotationAssertion( "CHEBI:23928") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:2368277") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:51-43-4") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:51-43-4") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:51-43-4") @@ -22051,7 +21942,6 @@ SubClassOf( ObjectSomeValuesFrom( "A prephenate(2-) obtained by deprotonation of both carboxy groups of (1s,4s)-prephenic acid; major species at pH 7.3.") AnnotationAssertion( "CHEBI:14884") AnnotationAssertion( "CHEBI:26256") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3682733") AnnotationAssertion( "KEGG:C00254") AnnotationAssertion( "MetaCyc:PREPHENATE") AnnotationAssertion(Annotation( "Reaxys") "Reaxys:3682733") @@ -22134,7 +22024,6 @@ SubClassOf( ObjectSomeValuesFrom( (glutamate(2-)) AnnotationAssertion( "A dicarboxylic acid dianion that is the conjugate base of glutamate(1-).") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:4134100") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:327903") AnnotationAssertion(Annotation( "Reaxys") "Reaxys:4134100") AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "2-aminopentanedioate") @@ -22188,7 +22077,6 @@ AnnotationAssertion( "CHEBI:13704") AnnotationAssertion( "CHEBI:22165") AnnotationAssertion( "CHEBI:40480") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1901470") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:71-50-1") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:71-50-1") AnnotationAssertion( "DrugBank:DB03166") @@ -22259,7 +22147,6 @@ SubClassOf( "An gamma-amino acid anion resulting from the deprotonation of the carboxy group of gamma-aminobutyric acid.") AnnotationAssertion( "CHEBI:11961") AnnotationAssertion( "CHEBI:20317") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3536873") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:559138") AnnotationAssertion( "KEGG:C00334") AnnotationAssertion(Annotation( "Europe PMC") "PMID:12509893") @@ -22305,7 +22192,6 @@ AnnotationAssertion( "CHEBI:42460") AnnotationAssertion( "CHEBI:5145") AnnotationAssertion( "BPDB:1749") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1209246") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:64-18-6") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:64-18-6") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:64-18-6") @@ -22423,7 +22309,6 @@ AnnotationAssertion( "CHEBI:22948") AnnotationAssertion( "CHEBI:3234") AnnotationAssertion( "CHEBI:41208") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:906770") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:107-92-6") AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:107-92-6") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:107-92-6") @@ -22528,7 +22413,6 @@ SubClassOf( (L-phenylalaninate) AnnotationAssertion( "An optically active form of phenylalaninate having L-configuration.") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:4136718") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:329084") AnnotationAssertion(Annotation( "Europe PMC") "PMID:21956539") AnnotationAssertion(Annotation( "Reaxys") "Reaxys:4136718") @@ -22626,7 +22510,6 @@ SubClassOf( ObjectSomeValuesFrom( (L-tyrosinate(1-)) AnnotationAssertion( "An optically active form of tyrosinate having L-configuration.") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:4784244") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:329373") AnnotationAssertion(Annotation( "Reaxys") "Reaxys:4784244") AnnotationAssertion(Annotation( "JCBN") "L-tyrosinate(1-)") @@ -22649,7 +22532,6 @@ SubClassOf( ObjectSomeValuesFrom( (L-tyrosinate(2-)) AnnotationAssertion( "The L-enantiomer of tyrosinate(2-).") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:5339596") AnnotationAssertion(Annotation( "Gmelin") "Gmelin:364975") AnnotationAssertion(Annotation( "Reaxys") "Reaxys:5339596") AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "L-tyrosinate") @@ -23589,8 +23471,8 @@ SubClassOf( (alpha-amino-acid anion) AnnotationAssertion( "An amino-acid anion obtained by deprotonation of any alpha-amino acid.") -AnnotationAssertion(Annotation( "ChEBI") "alpha-amino-acid anion") AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "alpha-amino acid anion") AnnotationAssertion(Annotation( "ChEBI") "alpha-amino acid anions") AnnotationAssertion(Annotation( "ChEBI") "alpha-amino-acid anions") AnnotationAssertion( "CHEBI:33558") @@ -23711,7 +23593,6 @@ SubClassOf( ((S)-noradrenaline) AnnotationAssertion( "The S-enantiomer of noradrenaline.") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:2937999") AnnotationAssertion( "LINCS:LSM-37072") AnnotationAssertion(Annotation( "Reaxys") "Reaxys:2937999") AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "4-[(1S)-2-amino-1-hydroxyethyl]benzene-1,2-diol") @@ -24118,9 +23999,9 @@ SubClassOf( (amino-acid cation) -AnnotationAssertion(Annotation( "ChEBI") "amino-acid cation") AnnotationAssertion( "chebi_ontology") AnnotationAssertion(Annotation( "ChEBI") "amino acid cation") +AnnotationAssertion(Annotation( "ChEBI") "amino acid cations") AnnotationAssertion(Annotation( "ChEBI") "amino-acid cations") AnnotationAssertion( "CHEBI:33703") AnnotationAssertion( ) @@ -24171,6 +24052,7 @@ AnnotationAssertion( "IUPAC") Annotation( ) "amino-acid residue") AnnotationAssertion( "chebi_ontology") AnnotationAssertion(Annotation( "ChEBI") "amino acid residue") +AnnotationAssertion(Annotation( "ChEBI") "amino acid residues") AnnotationAssertion(Annotation( "JCBN") "amino-acid residues") AnnotationAssertion( "CHEBI:33708") AnnotationAssertion( ) @@ -24213,8 +24095,8 @@ SubClassOf( ObjectSomeValuesFrom( (alpha-amino-acid cation) -AnnotationAssertion(Annotation( "ChEBI") "alpha-amino-acid cation") AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "alpha-amino acid cation") AnnotationAssertion(Annotation( "ChEBI") "alpha-amino acid cations") AnnotationAssertion(Annotation( "ChEBI") "alpha-amino-acid cations") AnnotationAssertion( "CHEBI:33719") @@ -24699,14 +24581,16 @@ AnnotationAssertion( "catalyst") SubClassOf( ) -# Class: (amino acid zwitterion) +# Class: (amino-acid zwitterion) AnnotationAssertion( "The zwitterionic form of an amino acid having a negatively charged carboxyl group and a positively charged amino group.") -AnnotationAssertion(Annotation( "ChEBI") "amino acid zwitterion") AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "amino acid zwitterion") +AnnotationAssertion(Annotation( "ChEBI") "amino acid zwitterions") +AnnotationAssertion(Annotation( "ChEBI") "amino-acid zwitterions") AnnotationAssertion( "CHEBI:35238") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "amino acid zwitterion") +AnnotationAssertion(rdfs:label "amino-acid zwitterion") SubClassOf( ) # Class: (quaternary ammonium ion) @@ -25856,7 +25740,6 @@ SubClassOf( (farnesane) AnnotationAssertion( "A sesquiterpene that is dodecane substituted by methyl groups at positions 2, 6 and 10.") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1719672") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:3891-98-3") AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:3891-98-3") AnnotationAssertion(Annotation( "LIPID MAPS") "LIPID_MAPS_instance:LMPR0103010000") @@ -26038,8 +25921,8 @@ SubClassOf( (amino-acid anion) -AnnotationAssertion(Annotation( "ChEBI") "amino-acid anion") AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "amino acid anion") AnnotationAssertion(Annotation( "ChEBI") "amino acid anions") AnnotationAssertion(Annotation( "ChEBI") "amino-acid anions") AnnotationAssertion( "CHEBI:37022") @@ -26856,7 +26739,6 @@ SubClassOf( ObjectSomeValuesFrom( (D-glucopyranose) AnnotationAssertion( "A glucopyranose having D-configuration.") -AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1281604") AnnotationAssertion(Annotation( "ChemIDplus") "CAS:2280-44-6") AnnotationAssertion( "GlyGen:G15021LG") AnnotationAssertion( "GlyTouCan:G15021LG") @@ -27220,17 +27102,6 @@ AnnotationAssertion( "dihydroxytetrahydrofuran") SubClassOf( ) -# Class: (double-stranded DNA) - -AnnotationAssertion( "KEGG:C00434") -AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Double-stranded DNA") -AnnotationAssertion( "chebi_ontology") -AnnotationAssertion(Annotation( "UniProt") "dsDNA") -AnnotationAssertion( "CHEBI:4705") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "double-stranded DNA") -SubClassOf( ) - # Class: (acetate ester) AnnotationAssertion( "Any carboxylic ester where the carboxylic acid component is acetic acid.") @@ -28116,26 +27987,6 @@ AnnotationAssertion( "hydroxylapatite") SubClassOf( ) -# Class: (oxyketone) - -AnnotationAssertion( "A compound with the general formula R2C=O (R=/=H) where one or more of the R groups contains an oxy (-O-) group.") -AnnotationAssertion( "chebi_ontology") -AnnotationAssertion(Annotation( "ChEBI") "oxyketones") -AnnotationAssertion( "CHEBI:52395") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "oxyketone") -SubClassOf( ) - -# Class: (alpha-oxyketone) - -AnnotationAssertion( "An oxyketone with the general formula R2C(=O) (R=/=H) where one or more of the R groups contains an oxy (-O-) group and the oxy and carbonyl groups are bonded to the same carbon atom.") -AnnotationAssertion( "chebi_ontology") -AnnotationAssertion(Annotation( "ChEBI") "alpha-oxyketones") -AnnotationAssertion( "CHEBI:52396") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "alpha-oxyketone") -SubClassOf( ) - # Class: (galactolipid) AnnotationAssertion( "A glycolipid and which the glyco component is specified as galactosyl.") @@ -29395,7 +29246,6 @@ AnnotationAssertion(Annotation( "ChEBI") "amino-acid anion residues") AnnotationAssertion(Annotation( "ChEBI") "anionic amino acid residue") AnnotationAssertion(Annotation( "ChEBI") "anionic amino acid residues") -AnnotationAssertion(Annotation( "ChEBI") "anionic amino-acid residues") AnnotationAssertion( "CHEBI:64898") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "anionic amino-acid residue") @@ -30283,16 +30133,19 @@ AnnotationAssertion( "refrigerant") SubClassOf( ) -# Class: (alpha-amino acid zwitterion) +# Class: (alpha-amino-acid zwitterion) -AnnotationAssertion( "An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of any alpha-amino acid; major species at pH 7.3.") +AnnotationAssertion( "An amino acid-zwitterion obtained by transfer of a proton from the carboxy to the amino group of any alpha-amino acid; major species at pH 7.3.") AnnotationAssertion( "CHEBI:83409") AnnotationAssertion(Annotation( "SUBMITTER") "MetaCyc:Alpha-Amino-Acids") AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "alpha-amino acid zwitterion") +AnnotationAssertion(Annotation( "ChEBI") "alpha-amino acid zwitterions") +AnnotationAssertion(Annotation( "ChEBI") "alpha-amino-acid zwitterions") AnnotationAssertion(Annotation( "UniProt") "an alpha-amino acid") AnnotationAssertion( "CHEBI:78608") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "alpha-amino acid zwitterion") +AnnotationAssertion(rdfs:label "alpha-amino-acid zwitterion") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -30517,16 +30370,18 @@ AnnotationAssertion( "non-proteinogenic amino acid") SubClassOf( ) -# Class: (amino acid derivative) +# Class: (amino-acid derivative) AnnotationAssertion( "Any derivative of an amino acid resulting from reaction at an amino group, carboxy group, side-chain functional group, or from the replacement of any hydrogen by a heteroatom. The definition normally excludes peptides containing amino acid residues.") AnnotationAssertion( "CHEBI:25359") AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "amino acid derivative") AnnotationAssertion(Annotation( "ChEBI") "amino acid derivatives") +AnnotationAssertion(Annotation( "ChEBI") "amino-acid derivatives") AnnotationAssertion(Annotation( "ChEBI") "modified amino acids") AnnotationAssertion( "CHEBI:83821") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "amino acid derivative") +AnnotationAssertion(rdfs:label "amino-acid derivative") SubClassOf( ) # Class: (non-proteinogenic L-alpha-amino acid) @@ -48306,29 +48161,6 @@ AnnotationAssertion(rdfs:label "mito EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (negative regulation of transcription by RNA polymerase II) - -AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:txnOH") "Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.") -AnnotationAssertion( "GO:0010553") -AnnotationAssertion( "GO:0045816") -AnnotationAssertion( "down regulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "down-regulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "downregulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "inhibition of transcription from RNA polymerase II promoter") -AnnotationAssertion( "negative regulation of transcription from Pol II promoter") -AnnotationAssertion( "negative regulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "down regulation of global transcription from RNA polymerase II promoter") -AnnotationAssertion( "down-regulation of global transcription from RNA polymerase II promoter") -AnnotationAssertion( "downregulation of global transcription from RNA polymerase II promoter") -AnnotationAssertion( "inhibition of global transcription from RNA polymerase II promoter") -AnnotationAssertion( "negative regulation of gene-specific transcription from RNA polymerase II promoter") -AnnotationAssertion( "negative regulation of global transcription from Pol II promoter") -AnnotationAssertion( "negative regulation of transcription from RNA polymerase II promoter, global") -AnnotationAssertion( "GO:0000122") -AnnotationAssertion(rdfs:label "negative regulation of transcription by RNA polymerase II") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (Golgi membrane) AnnotationAssertion(Annotation( "GOC:mah") "The lipid bilayer surrounding any of the compartments of the Golgi apparatus.") @@ -48585,102 +48417,6 @@ AnnotationAssertion( "cell morphogenesis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (transcription cis-regulatory region binding) - -AnnotationAssertion(Annotation( "GOC:txnOH") "Binding to a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/19312"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20791"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2010-08-10T02:58:18Z") -AnnotationAssertion( "GO:0000975") -AnnotationAssertion( "GO:0000984") -AnnotationAssertion( "GO:0001017") -AnnotationAssertion( "GO:0044212") -AnnotationAssertion( "regulatory region DNA binding") -AnnotationAssertion( "transcription regulatory region sequence-specific DNA binding") -AnnotationAssertion( "bacterial-type RNA polymerase regulatory region DNA binding") -AnnotationAssertion( "bacterial-type RNA polymerase transcription regulatory region sequence-specific DNA binding") -AnnotationAssertion( "eubacterial-type RNA polymerase regulatory region DNA binding") -AnnotationAssertion( "eubacterial-type RNA polymerase regulatory region sequence-specific DNA binding") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "transcription regulatory region DNA binding") -AnnotationAssertion( "GO:0000976") -AnnotationAssertion(rdfs:comment "Note that this term is meant to also capture non-specific binding to regulatory regions. Also, to minimize ambiguity in the use of the word \"promoter\" in GO, we have chosen the phrase \"transcription regulatory region\" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the \"core promoter\" where the basal transcription machinery binds, the \"core promoter proximal region\" where regulatory factors other than the basal machinery bind. There are also additional regulatory regions, in both the DNA and the RNA transcript, which regulate elongation or termination of transcription.") -AnnotationAssertion(rdfs:label "transcription cis-regulatory region binding") -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) - -# Class: (RNA polymerase II transcription regulatory region sequence-specific DNA binding) - -AnnotationAssertion(Annotation( "GOC:txnOH") "Binding to a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/19312"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2010-08-10T11:05:36Z") -AnnotationAssertion( "GO:0001012") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "RNA polymerase II regulatory region DNA binding") -AnnotationAssertion( "GO:0000977") -AnnotationAssertion(rdfs:comment "To minimize ambiguity in the use of the word \"promoter\" in GO, we have chosen the phrase \"transcription regulatory region\" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the \"core promoter\" where the basal transcription machinery binds, the \"core promoter proximal region\" where regulatory factors other than the basal machinery bind. There are also additional regulatory regions, in both the DNA and the RNA transcript, which regulate elongation or termination of transcription.") -AnnotationAssertion(rdfs:label "RNA polymerase II transcription regulatory region sequence-specific DNA binding") -SubClassOf( ) - -# Class: (DNA-binding transcription factor activity, RNA polymerase II-specific) - -AnnotationAssertion(Annotation( "GOC:txnOH-2018") "A DNA-binding transcription factor activity that modulates the transcription of specific gene sets transcribed by RNA polymerase II.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/15530"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16131"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16152"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2010-08-10T02:37:21Z") -AnnotationAssertion( "GO:0000982") -AnnotationAssertion( "GO:0001133") -AnnotationAssertion( "GO:0001200") -AnnotationAssertion( "GO:0001201") -AnnotationAssertion( "GO:0001202") -AnnotationAssertion( "GO:0001203") -AnnotationAssertion( "GO:0003705") -AnnotationAssertion(Annotation( "GOC:vw") "transcription factor") -AnnotationAssertion( "RNA polymerase II transcription factor activity, sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II transcription factor activity, sequence-specific transcription regulatory region DNA binding") -AnnotationAssertion( "sequence-specific DNA binding RNA polymerase II transcription factor activity") -AnnotationAssertion( "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "RNA polymerase II transcription factor activity, copper ion regulated core promoter proximal region sequence-specific binding") -AnnotationAssertion( "RNA polymerase II transcription factor activity, copper ion regulated proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II transcription factor activity, metal ion regulated core promoter proximal region sequence-specific binding") -AnnotationAssertion( "RNA polymerase II transcription factor activity, metal ion regulated proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II transcription factor activity, metal ion regulated sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II transcription factor activity, zinc ion regulated core promoter proximal region sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II transcription factor activity, zinc ion regulated proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "copper ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity") -AnnotationAssertion( "metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity") -AnnotationAssertion( "metal ion regulated sequence-specific DNA binding RNA polymerase II transcription factor activity") -AnnotationAssertion( "sequence-specific distal enhancer binding RNA polymerase II transcription factor activity") -AnnotationAssertion( "transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding") -AnnotationAssertion( "transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding") -AnnotationAssertion( "transcription factor activity, RNA polymerase II proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "zinc ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity") -AnnotationAssertion( "GO:0000981") -AnnotationAssertion(rdfs:comment "For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.") -AnnotationAssertion(rdfs:label "DNA-binding transcription factor activity, RNA polymerase II-specific") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (transcription regulatory region nucleic acid binding) - -AnnotationAssertion(Annotation( "GOC:txnOH") "Binding to a nucleic acid region that regulates a nucleic acid-based process. Such processes include transcription, DNA replication, and DNA repair.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20791"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2010-10-21T04:08:56Z") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "regulatory region nucleic acid binding") -AnnotationAssertion( "GO:0001067") -AnnotationAssertion(rdfs:label "transcription regulatory region nucleic acid binding") -SubClassOf( ) - # Class: (response to acid chemical) AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:rn") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by the chemical structure of the anion portion of a dissociated acid (rather than the acid acting as a proton donor). The acid chemical may be in gaseous, liquid or solid form.") @@ -48694,145 +48430,6 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "response to acid chemical") SubClassOf( ) -# Class: (RNA-templated transcription) - -AnnotationAssertion(Annotation( "GOC:txnOH") "The synthesis of an RNA transcript from an RNA template.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/22555"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2011-03-14T03:54:46Z") -AnnotationAssertion(Annotation( "GOC:txnOH") "transcription, RNA-dependent") -AnnotationAssertion( "transcription, RNA-templated") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0001172") -AnnotationAssertion(rdfs:label "RNA-templated transcription") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (DNA-binding transcription activator activity) - -AnnotationAssertion(Annotation( "GOC:txnOH-2018") "A DNA-binding transcription factor activity that activates or increases transcription of specific gene sets.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16534"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16736"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2011-01-26T03:09:27Z") -AnnotationAssertion( "GO:0001140") -AnnotationAssertion( "GO:0001215") -AnnotationAssertion( "bacterial-type RNA polymerase transcriptional activator activity, metal ion regulated sequence-specific DNA binding") -AnnotationAssertion( "bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding") -AnnotationAssertion( "metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "transcriptional activator activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "transcriptional activator activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "GO:0001216") -AnnotationAssertion(rdfs:comment "For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.") -AnnotationAssertion(rdfs:label "DNA-binding transcription activator activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) - -# Class: (DNA-binding transcription repressor activity) - -AnnotationAssertion(Annotation( "GOC:txnOH-2018") "A DNA-binding transcription factor activity that represses or decreases the transcription of specific gene sets.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16736"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20253"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2011-01-26T03:15:45Z") -AnnotationAssertion( "GO:0001141") -AnnotationAssertion( "GO:0001218") -AnnotationAssertion( "GO:0001219") -AnnotationAssertion( "GO:0001220") -AnnotationAssertion( "bacterial-type DNA binding transcription repressor activity") -AnnotationAssertion( "bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "bacterial-type RNA polymerase transcriptional repressor activity, cadmium ion regulated sequence-specific DNA binding") -AnnotationAssertion( "bacterial-type RNA polymerase transcriptional repressor activity, copper ion regulated sequence-specific DNA binding") -AnnotationAssertion( "bacterial-type RNA polymerase transcriptional repressor activity, metal ion regulated sequence-specific DNA binding") -AnnotationAssertion( "bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding") -AnnotationAssertion( "cadmium ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "copper ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "transcriptional repressor activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding") -AnnotationAssertion( "transcriptional repressor activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0001217") -AnnotationAssertion(rdfs:comment "For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.") -AnnotationAssertion(rdfs:label "DNA-binding transcription repressor activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) - -# Class: (DNA-binding transcription repressor activity, RNA polymerase II-specific) - -AnnotationAssertion(Annotation( "GOC:txnOH-2018") "A DNA-binding transcription factor activity that represses or decreases the transcription of specific gene sets transcribed by RNA polymerase II.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16131"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16152"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16534"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20253"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2010-10-26T03:56:48Z") -AnnotationAssertion( "GO:0001078") -AnnotationAssertion( "GO:0001206") -AnnotationAssertion( "GO:0001210") -AnnotationAssertion( "GO:0001214") -AnnotationAssertion( "RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "RNA polymerase II distal enhancer sequence-specific DNA-binding transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "RNA polymerase II transcriptional repressor activity, metal ion regulated core promoter proximal region sequence-specific binding") -AnnotationAssertion( "RNA polymerase II transcriptional repressor activity, metal ion regulated proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "distal enhancer DNA-binding transcription repressor activity, RNA polymerase II-specific") -AnnotationAssertion( "metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "metal ion regulated sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "proximal promoter DNA-binding transcription repressor activity, RNA polymerase II-specific") -AnnotationAssertion( "sequence-specific distal enhancer binding RNA polymerase II transcription factor activity involved in negative regulation of transcription") -AnnotationAssertion( "transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding") -AnnotationAssertion( "transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "transcriptional repressor activity, metal ion regulated sequence-specific DNA binding") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0001227") -AnnotationAssertion(rdfs:comment "For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.") -AnnotationAssertion(rdfs:label "DNA-binding transcription repressor activity, RNA polymerase II-specific") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) - -# Class: (DNA-binding transcription activator activity, RNA polymerase II-specific) - -AnnotationAssertion(Annotation( "GOC:aruk") Annotation( "GOC:txnOH-2018") Annotation( "PMID:20737563") Annotation( "PMID:27145859") "A DNA-binding transcription factor activity that activates or increases transcription of specific gene sets transcribed by RNA polymerase II.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16131"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16152"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16534"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20253"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2012-01-26T03:10:20Z") -AnnotationAssertion( "GO:0001077") -AnnotationAssertion( "GO:0001205") -AnnotationAssertion( "GO:0001209") -AnnotationAssertion( "GO:0001211") -AnnotationAssertion( "GO:0001212") -AnnotationAssertion( "GO:0001213") -AnnotationAssertion( "RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "RNA polymerase II distal enhancer sequence-specific DNA-binding transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "RNA polymerase II transcriptional activator activity, copper ion regulated proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II transcriptional activator activity, metal ion regulated core promoter proximal region sequence-specific binding") -AnnotationAssertion( "RNA polymerase II transcriptional activator activity, metal ion regulated proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II transcriptional activator activity, zinc ion regulated core promoter proximal region sequence-specific binding") -AnnotationAssertion( "RNA polymerase II transcriptional activator activity, zinc ion regulated proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "copper ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "distal enhancer DNA-binding transcription activator activity, RNA polymerase II-specific") -AnnotationAssertion( "metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "metal ion regulated sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "proximal promoter DNA-binding transcription activator activity, RNA polymerase II-specific") -AnnotationAssertion( "sequence-specific distal enhancer binding RNA polymerase II transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding") -AnnotationAssertion( "transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific DNA binding") -AnnotationAssertion( "transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "transcriptional activator activity, metal ion regulated sequence-specific DNA binding") -AnnotationAssertion( "zinc ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in positive regulation of transcription") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0001228") -AnnotationAssertion(rdfs:comment "For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.") -AnnotationAssertion(rdfs:label "DNA-binding transcription activator activity, RNA polymerase II-specific") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) - # Class: (skeletal system development) AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:jid") Annotation( "GOC:tb") "The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton).") @@ -49914,7 +49511,7 @@ EquivalentClasses( ObjectIntersection # Class: (serotonin secretion) -AnnotationAssertion(Annotation( "GOC:ef") Annotation( "ISBN:0198506732") Annotation( "ISBN:0781735149") "The regulated release of serotonin by a cell. Serotonin (5-hydroxytryptamine, or 5-HT) is a monoamine synthesised in serotonergic neurons in the central nervous system, enterochromaffin cells in the gastrointestinal tract and some immune system cells.") +AnnotationAssertion(Annotation( "GOC:ef") Annotation( "ISBN:0198506732") Annotation( "ISBN:0781735149") "The regulated release of serotonin by a cell. Serotonin (5-hydroxytryptamine, or 5-HT) is a monoamine synthesized in serotonergic neurons in the central nervous system, enterochromaffin cells in the gastrointestinal tract and some immune system cells.") AnnotationAssertion( "5-HT secretion") AnnotationAssertion( "5-hydroxytryptamine secretion") AnnotationAssertion( "biological_process") @@ -53094,6 +52691,7 @@ EquivalentClasses( ObjectIntersection # Class: (negative regulation of proteolysis associated with antigen processing and presentation) AnnotationAssertion(Annotation( "GOC:add") "Any process that stops, prevents, or reduces the frequency, rate, or extent of proteolysis associated with antigen processing and presentation.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/29024"^^xsd:anyURI) AnnotationAssertion( "down regulation of proteolysis associated with antigen processing and presentation") AnnotationAssertion( "down-regulation of proteolysis associated with antigen processing and presentation") AnnotationAssertion( "downregulation of proteolysis associated with antigen processing and presentation") @@ -53102,7 +52700,7 @@ AnnotationAssertion( "GO:0002629") AnnotationAssertion(rdfs:label "negative regulation of proteolysis associated with antigen processing and presentation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -53118,7 +52716,7 @@ AnnotationAssertion( "GO:0002630") AnnotationAssertion(rdfs:label "positive regulation of proteolysis associated with antigen processing and presentation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -56286,6 +55884,7 @@ SubClassOf( ObjectSomeValuesFrom( (heart rudiment morphogenesis) AnnotationAssertion(Annotation( "GOC:mtg_heart") "The process in which the anatomical structures of the heart rudiment are generated and organized.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/22938"^^xsd:anyURI) AnnotationAssertion( "dph") AnnotationAssertion( "2009-10-27T08:38:04Z") AnnotationAssertion(Annotation( "GOC:mtg_heart") "heart cone morphogenesis") @@ -56295,6 +55894,7 @@ AnnotationAssertion(rdfs:label "hear EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (heart rudiment formation) @@ -57105,75 +56705,6 @@ AnnotationAssertion( "chromatin binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (double-stranded DNA binding) - -AnnotationAssertion(Annotation( "GOC:elh") Annotation( "GOC:vw") "Binding to double-stranded DNA.") -AnnotationAssertion(Annotation( "GOC:elh") "dsDNA binding") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0003690") -AnnotationAssertion(rdfs:label "double-stranded DNA binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (DNA-binding transcription factor activity) - -AnnotationAssertion(Annotation( "GOC:txnOH-2018") "A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/15704"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16534"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20253"^^xsd:anyURI) -AnnotationAssertion( "krc") -AnnotationAssertion( "2010-10-21T04:37:54Z") -AnnotationAssertion( "GO:0000130") -AnnotationAssertion( "GO:0001071") -AnnotationAssertion( "GO:0001130") -AnnotationAssertion( "GO:0001131") -AnnotationAssertion( "GO:0001151") -AnnotationAssertion( "GO:0001199") -AnnotationAssertion( "GO:0001204") -AnnotationAssertion( "nucleic acid binding transcription factor activity") -AnnotationAssertion( "transcription factor activity") -AnnotationAssertion( "DNA binding transcription factor activity") -AnnotationAssertion( "gene-specific transcription factor activity") -AnnotationAssertion( "sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "bacterial-type DNA binding transcription factor activity") -AnnotationAssertion( "bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "bacterial-type RNA polymerase transcription enhancer sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding") -AnnotationAssertion( "bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding") -AnnotationAssertion( "metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity") -AnnotationAssertion( "metal ion regulated sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity") -AnnotationAssertion( "transcription factor activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding") -AnnotationAssertion( "transcription factor activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding") -AnnotationAssertion( "transcription factor activity, bacterial-type RNA polymerase transcription enhancer sequence-specific binding") -AnnotationAssertion( "transcription factor activity, metal ion regulated sequence-specific DNA binding") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0003700") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Usage guidance: Most DNA-binding transcription factors do not have enzymatic activity. The presence of specific DNA-binding domains known to be present in DNA-binding transcription factors (HOX, GATA etc) should be used to help decide whether a protein is a DNA binding transcription factor or a coregulator. If a protein has an enzymatic activity (for example, ubiquitin ligase, histone acetyl transferase) and no known DNA binding domain, consider annotating to GO:0003712 transcription coregulator activity. Special care should be taken with proteins containing zinc fingers, Myb/SANT and ARID domains, since only a subset of proteins containing these domains directly and selectively bind to regulatory DNA motifs in cis-regulatory regions.") -AnnotationAssertion(rdfs:label "DNA-binding transcription factor activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) - -# Class: (nuclear steroid receptor activity) - -AnnotationAssertion(Annotation( "GOC:signaling") Annotation( "PMID:14708019") "Combining with a steroid hormone and transmitting the signal within the cell to initiate a change in cell activity or function.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16717"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26957"^^xsd:anyURI) -AnnotationAssertion( "steroid hormone receptor activity") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0003707") -AnnotationAssertion(rdfs:label "nuclear steroid receptor activity") -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (RNA binding) AnnotationAssertion(Annotation( "GOC:jl") Annotation( "GOC:mah") "Binding to an RNA molecule or a portion thereof.") @@ -57668,6 +57199,15 @@ AnnotationAssertion(Annotation(rdfs:label "SH pentamer is phosphorylated") "Reactome:R-HSA-983703") AnnotationAssertion(Annotation(rdfs:label "SYK autophosphorylates at the activated BCR") "Reactome:R-HSA-983707") AnnotationAssertion(Annotation(rdfs:label "LYN, FYN, BLK phosphorylate ITAMs of Ig-alpha (CD79A) and Ig-beta (CD79B)") "Reactome:R-HSA-983709") +AnnotationAssertion(Annotation(rdfs:label "ABL1 phosphorylates PPARG2") "Reactome:R-HSA-9841924") +AnnotationAssertion(Annotation(rdfs:label "Autophosphorylation of LTK dimer:ALKAL1,2") "Reactome:R-HSA-9842648") +AnnotationAssertion(Annotation(rdfs:label "Active LTK receptor phosphorylates SHC1") "Reactome:R-HSA-9842651") +AnnotationAssertion(Annotation(rdfs:label "Active LTK phosphorylates IRS1") "Reactome:R-HSA-9842666") +AnnotationAssertion(Annotation(rdfs:label "CLIP1-LTK fusion autophosphorylates") "Reactome:R-HSA-9842667") +AnnotationAssertion(Annotation(rdfs:label "Phosphorylation of KDR (VEGFR2) and FLT4 (VEGFR3) and PECAM1 in PECAM1:CDH5:KDR:FLT4:CTNNB1") "Reactome:R-HSA-9860500") +AnnotationAssertion(Annotation(rdfs:label "p-T816-PKN2 phosphorylates AKT1 on serine-308") "Reactome:R-HSA-9860759") +AnnotationAssertion(Annotation(rdfs:label "p-Y397-PTK2 (FAK) phosphorylates CHUK (IKKA)") "Reactome:R-HSA-9861469") +AnnotationAssertion(Annotation(rdfs:label "p-Y393-ABL1 phosphorylates tyrosine-407 of YAP1") "Reactome:R-HSA-9865196") AnnotationAssertion( "protein-tyrosine kinase activity") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0004713") @@ -57735,65 +57275,6 @@ AnnotationAssertion(rdfs:label "tran SubClassOf( ) SubClassOf( ) -# Class: (nuclear receptor activity) - -AnnotationAssertion(Annotation( "GOC:txnOH-2018") Annotation( "PMID:23457262") "A DNA-binding transcription factor activity regulated by binding to a ligand that modulates the transcription of specific gene sets transcribed by RNA polymerase II. Nuclear receptor ligands are usually lipid-based (such as a steroid hormone) and the binding of the ligand to its receptor often occurs in the cytosol, which leads to its translocation to the nucleus.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/19518"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20253"^^xsd:anyURI) -AnnotationAssertion( "GO:0003708") -AnnotationAssertion( "GO:0004880") -AnnotationAssertion( "GO:0004882") -AnnotationAssertion( "GO:0004884") -AnnotationAssertion( "GO:0004886") -AnnotationAssertion( "GO:0004887") -AnnotationAssertion( "GO:0008434") -AnnotationAssertion( "GO:0038050") -AnnotationAssertion( "GO:0038051") -AnnotationAssertion( "GO:0038052") -AnnotationAssertion( "RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding") -AnnotationAssertion( "ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity") -AnnotationAssertion(Annotation( "Wikipedia:Calcitriol") "1,25-(OH)2D3 receptor activity") -AnnotationAssertion( "9-cis retinoic acid receptor activity") -AnnotationAssertion( "RNA polymerase II transcription factor activity, estrogen-activated sequence-specific DNA binding") -AnnotationAssertion( "RNA polymerase II transcription factor activity, glucocorticoid-activated sequence-specific DNA binding") -AnnotationAssertion( "RXR") -AnnotationAssertion( "androgen receptor activity") -AnnotationAssertion( "calcitriol receptor activity") -AnnotationAssertion( "ecdysteroid hormone receptor activity") -AnnotationAssertion(Annotation( "GOC:bf") "estrogen nuclear receptor activity") -AnnotationAssertion(Annotation( "GOC:bf") "glucocorticoid receptor activity") -AnnotationAssertion( "juvenile hormone receptor activity") -AnnotationAssertion( "nuclear hormone receptor") -AnnotationAssertion( "retinoic acid receptor activity") -AnnotationAssertion(Annotation( "GOC:bf") "retinoid-X receptor activity") -AnnotationAssertion( "thyroid hormone receptor activity") -AnnotationAssertion( "vitamin A receptor activity") -AnnotationAssertion( "vitamin D receptor activity") -AnnotationAssertion(Annotation( "GOC:bf") Annotation( "Wikipedia:Calcitriol_receptor") "vitamin D3 receptor activity") -AnnotationAssertion( "molecular_function") -AnnotationAssertion(Annotation( "GOC:bf") "ligand-dependent nuclear receptor activity") -AnnotationAssertion(Annotation( "GOC:bf") "ligand-dependent transcription factor activity") -AnnotationAssertion( "GO:0004879") -AnnotationAssertion(rdfs:comment "Usage guidance: Nuclear receptors are a protein family defined by the presence of a C4-type zinc finger DNA-binding domain and a ligand binding domain. For nuclear receptors, the DNA binding motif is most often referred to as a response element. GO:0004879 is intended for annotation of nuclear receptors that regulate transcription by binding directly to DNA. When the nuclear receptor functions by binding to other transcription factors or transcription factor complexes, consider instead annotating to 'GO:0030374 ; nuclear receptor transcription coactivator activity' or GO:0140536 ; nuclear corepressor activity.") -AnnotationAssertion(rdfs:label "nuclear receptor activity") -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (nuclear glucocorticoid receptor activity) - -AnnotationAssertion(Annotation( "GOC:signaling") Annotation( "PMID:17689856") Annotation( "PMID:20920967") "Combining with a glucocorticoid and transmitting the signal within the cell trigger a change in cell activity or function.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16717"^^xsd:anyURI) -AnnotationAssertion( "glucocorticoid receptor activity") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0004883") -AnnotationAssertion(rdfs:label "nuclear glucocorticoid receptor activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (transmembrane signaling receptor activity) AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "Wikipedia:Transmembrane_receptor") "Combining with an extracellular or intracellular signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity or state as part of signal transduction.") @@ -57848,6 +57329,7 @@ AnnotationAssertion( "Reactome:R-HSA-114552") AnnotationAssertion(Annotation(rdfs:label "Thrombin-activated PARs activate Gq") "Reactome:R-HSA-114558") AnnotationAssertion(Annotation(rdfs:label "The high affinity receptor complex binds to G-protein") "Reactome:R-HSA-167408") +AnnotationAssertion(Annotation(rdfs:label "GLP1R:GLP1 activates G(s)") "Reactome:R-HSA-381706") AnnotationAssertion( "Wikipedia:GPCR") AnnotationAssertion( "G protein coupled receptor activity") AnnotationAssertion( "G protein linked receptor activity") @@ -58126,9 +57608,9 @@ SubClassOf( ObjectSomeValuesFrom( (L-glutamate transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:ai") Annotation( "GOC:mtg_transport") Annotation( "ISBN:0815340729") "Enables the transfer of L-glutamate from one side of a membrane to the other. L-glutamate is the anion of 2-aminopentanedioic acid.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27521"^^xsd:anyURI) AnnotationAssertion( "L-glutamate transporter activity") AnnotationAssertion( "glutamate transmembrane transporter activity") -AnnotationAssertion(Annotation( "skos:broadMatch") "RHEA:66336") AnnotationAssertion(Annotation(rdfs:label "L-Glutamate loading of synaptic vesicle") "Reactome:R-HSA-210444") AnnotationAssertion(Annotation(rdfs:label "SLC17A6,7,8 exchange cytosolic L-Glu for synaptic vesicle H+") "Reactome:R-HSA-428052") AnnotationAssertion(Annotation(rdfs:label "Defective SLC17A8 does not exchange cytosolic L-Glu for synaptic vesicle H+") "Reactome:R-HSA-5624256") @@ -58140,22 +57622,20 @@ AnnotationAssertion(rdfs:label "L-gl EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (phosphate transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:mtg_transport") "Enables the transfer of phosphate ions from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27121"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27521"^^xsd:anyURI) AnnotationAssertion( "GO:0005317") AnnotationAssertion( "GO:1901677") -AnnotationAssertion( "RHEA:32823") AnnotationAssertion( "inorganic phosphate transmembrane transporter activity") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0005315") AnnotationAssertion(rdfs:label "phosphate transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (lipid transporter activity) @@ -58351,6 +57831,7 @@ EquivalentClasses( ObjectIntersection AnnotationAssertion(Annotation( "GOC:go_curators") "Binding to a protein.") AnnotationAssertion( "GO:0001948") AnnotationAssertion( "GO:0045308") +AnnotationAssertion(Annotation(rdfs:label "Intermediate II binds CYC1, UQCRC1, UQCRC2, UQCRH") "Reactome:R-HSA-9866132") AnnotationAssertion( "protein amino acid binding") AnnotationAssertion( "glycoprotein binding") AnnotationAssertion( "molecular_function") @@ -58677,22 +58158,6 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (transcription regulator complex) - -AnnotationAssertion(Annotation( "GOC:jl") "A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.") -AnnotationAssertion( "jl") -AnnotationAssertion( "2013-08-28T12:11:37Z") -AnnotationAssertion( "GO:0044797") -AnnotationAssertion( "GO:0044798") -AnnotationAssertion( "cellular_component") -AnnotationAssertion( "cytoplasmic transcription factor complex") -AnnotationAssertion( "nuclear transcription factor complex") -AnnotationAssertion( "transcription factor complex") -AnnotationAssertion( "GO:0005667") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "transcription regulator complex") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (chromosome) AnnotationAssertion(Annotation( "ISBN:0198547684") "A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.") @@ -59309,6 +58774,7 @@ SubClassOf( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27107"^^xsd:anyURI) AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28527"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28968"^^xsd:anyURI) AnnotationAssertion(Annotation( "skos:narrowMatch") "MetaCyc:GLYCOGENSYNTH-PWY") AnnotationAssertion(Annotation( "skos:narrowMatch") "MetaCyc:PWY-5067") AnnotationAssertion(Annotation( "skos:narrowMatch") "MetaCyc:PWY-7900") @@ -59320,8 +58786,6 @@ AnnotationAssertion( "GO:0005978") AnnotationAssertion(rdfs:label "glycogen biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) # Class: (regulation of glycogen biosynthetic process) @@ -59543,20 +59007,18 @@ AnnotationAssertion(rdfs:label "alco EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (cellular aldehyde metabolic process) +# Class: (aldehyde metabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "aldehyde metabolism") AnnotationAssertion( "alkanal metabolic process") AnnotationAssertion( "alkanal metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006081") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "cellular aldehyde metabolic process") +AnnotationAssertion(rdfs:label "aldehyde metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) # Class: (organic acid metabolic process) @@ -59568,7 +59030,6 @@ AnnotationAssertion( "organic acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ) # Class: (acetate metabolic process) @@ -59602,12 +59063,15 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "generation of precursor metabolites and energy") -SubClassOf( ) +SubClassOf( ) # Class: (gluconeogenesis) AnnotationAssertion(Annotation( "MetaCyc:GLUCONEO-PWY") "The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.") -AnnotationAssertion( "MetaCyc:GLUCONEO-PWY") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28953"^^xsd:anyURI) +AnnotationAssertion(Annotation( "skos:narrowMatch") "MetaCyc:GLUCONEO-PWY") +AnnotationAssertion(Annotation( "skos:narrowMatch") "MetaCyc:PWY-6142") +AnnotationAssertion(Annotation( "skos:narrowMatch") "MetaCyc:PWY66-399") AnnotationAssertion( "Wikipedia:Gluconeogenesis") AnnotationAssertion( "glucose biosynthesis") AnnotationAssertion( "glucose biosynthetic process") @@ -59900,96 +59364,6 @@ AnnotationAssertion( "chromatin organization") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (DNA-templated transcription) - -AnnotationAssertion(Annotation( "GOC:jl") Annotation( "GOC:txnOH") "The synthesis of an RNA transcript from a DNA template.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/14854"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16737"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/22258"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/22555"^^xsd:anyURI) -AnnotationAssertion( "GO:0001121") -AnnotationAssertion( "GO:0006350") -AnnotationAssertion( "GO:0061018") -AnnotationAssertion( "GO:0061022") -AnnotationAssertion( "cellular transcription") -AnnotationAssertion( "transcription") -AnnotationAssertion( "Wikipedia:Transcription_(genetics)") -AnnotationAssertion( "DNA-dependent transcription") -AnnotationAssertion(Annotation( "GOC:txnOH") "transcription, DNA-dependent") -AnnotationAssertion( "transcription, DNA-templated") -AnnotationAssertion( "bacterial transcription") -AnnotationAssertion( "transcription from bacterial-type RNA polymerase promoter") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0006351") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "DNA-templated transcription") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (regulation of DNA-templated transcription) - -AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:txnOH") "Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/25256"^^xsd:anyURI) -AnnotationAssertion( "GO:0032583") -AnnotationAssertion( "GO:0045449") -AnnotationAssertion( "GO:0061019") -AnnotationAssertion( "transcriptional control") -AnnotationAssertion( "regulation of cellular transcription, DNA-dependent") -AnnotationAssertion(Annotation( "GOC:txnOH") "regulation of transcription, DNA-dependent") -AnnotationAssertion( "regulation of transcription, DNA-templated") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "regulation of gene-specific transcription") -AnnotationAssertion( "GO:0006355") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "regulation of DNA-templated transcription") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (regulation of transcription by RNA polymerase II) - -AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:txnOH") "Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.") -AnnotationAssertion( "GO:0006358") -AnnotationAssertion( "GO:0010551") -AnnotationAssertion( "regulation of transcription from Pol II promoter") -AnnotationAssertion( "regulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "global transcription regulation from Pol II promoter") -AnnotationAssertion( "regulation of gene-specific transcription from RNA polymerase II promoter") -AnnotationAssertion( "regulation of global transcription from Pol II promoter") -AnnotationAssertion( "regulation of transcription from RNA polymerase II promoter, global") -AnnotationAssertion( "GO:0006357") -AnnotationAssertion(rdfs:label "regulation of transcription by RNA polymerase II") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (transcription by RNA polymerase II) - -AnnotationAssertion(Annotation( "GOC:jl") Annotation( "GOC:txnOH") Annotation( "ISBN:0321000382") "The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/14854"^^xsd:anyURI) -AnnotationAssertion( "GO:0032568") -AnnotationAssertion( "GO:0032569") -AnnotationAssertion( "transcription from Pol II promoter") -AnnotationAssertion( "transcription from RNA polymerase II promoter") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "RNA polymerase II transcription factor activity") -AnnotationAssertion( "gene-specific transcription from RNA polymerase II promoter") -AnnotationAssertion( "general transcription from RNA polymerase II promoter") -AnnotationAssertion(Annotation( "GOC:mah") "specific transcription from RNA polymerase II promoter") -AnnotationAssertion( "GO:0006366") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "transcription by RNA polymerase II") -SubClassOf( ) - # Class: (RNA catabolic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.") @@ -60082,7 +59456,7 @@ AnnotationAssertion( "GO:0006413") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "translational initiation") -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -60242,17 +59616,15 @@ AnnotationAssertion(rdfs:label "amin EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (regulation of cellular amino acid metabolic process) +# Class: (regulation of amino acid metabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amino acids.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "regulation of amino acid metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006521") -AnnotationAssertion(rdfs:label "regulation of cellular amino acid metabolic process") +AnnotationAssertion(rdfs:label "regulation of amino acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) # Class: (glutamate metabolic process) @@ -60363,23 +59735,23 @@ AnnotationAssertion( "tyrosine catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (cellular modified amino acid metabolic process) +# Class: (modified amino acid metabolic process) AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways involving compounds derived from amino acids, organic acids containing one or more amino substituents.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "amino acid derivative metabolic process") AnnotationAssertion( "cellular amino acid derivative metabolic process") AnnotationAssertion( "cellular amino acid derivative metabolism") +AnnotationAssertion(Annotation( "GOC:mah") "cellular modified amino acid metabolic process") AnnotationAssertion(Annotation( "GOC:mah") "cellular modified amino acid metabolism") -AnnotationAssertion(Annotation( "GOC:mah") "modified amino acid metabolic process") AnnotationAssertion(Annotation( "GOC:mah") "modified amino acid metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006575") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "cellular modified amino acid metabolic process") +AnnotationAssertion(rdfs:label "modified amino acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (biogenic amine metabolic process) @@ -60512,13 +59884,13 @@ SubClassOf( (fatty acid metabolic process) AnnotationAssertion(Annotation( "ISBN:0198547684") "The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "Wikipedia:Fatty_acid_metabolism") AnnotationAssertion( "fatty acid metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006631") AnnotationAssertion(rdfs:label "fatty acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (fatty acid biosynthetic process) @@ -60541,21 +59913,22 @@ EquivalentClasses( ObjectIntersection # Class: (membrane lipid metabolic process) AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways involving membrane lipids, any lipid found in or associated with a biological membrane.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "membrane lipid metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006643") AnnotationAssertion(rdfs:label "membrane lipid metabolic process") -SubClassOf( ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (phospholipid metabolic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "phospholipid metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006644") AnnotationAssertion(rdfs:label "phospholipid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (glycolipid metabolic process) @@ -60696,7 +60069,6 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) SubClassOf( ) -SubClassOf( ) # Class: (progesterone biosynthetic process) @@ -60827,6 +60199,7 @@ SubClassOf( (isoprenoid metabolic process) AnnotationAssertion(Annotation( "ISBN:0198547684") "The chemical reactions and pathways involving isoprenoid compounds, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "GO:0016096") AnnotationAssertion( "isoprenoid metabolism") AnnotationAssertion( "polyisoprenoid metabolic process") @@ -60837,7 +60210,6 @@ AnnotationAssertion( "GO:0006720") AnnotationAssertion(rdfs:label "isoprenoid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (terpenoid metabolic process) @@ -60937,7 +60309,6 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sulfur compound metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (phosphorus metabolic process) @@ -60948,7 +60319,6 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "phosphorus metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (phosphate-containing compound metabolic process) @@ -60975,7 +60345,6 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "xenobiotic metabolic process") -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (transport) @@ -63865,19 +63234,16 @@ SubClassOf( (metabolic process) -AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198547684") "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.") +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198547684") "A cellular process consisting of the biochemical pathways by which a living organism transforms chemical substances. This includes including anabolism (biosynthetic process) and catabolism (catabolic process). Metabolic processes includes the transformation of small molecules, as well macromolecular processes such as DNA repair and replication, protein synthesis and degradation.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28932"^^xsd:anyURI) AnnotationAssertion( "jl") AnnotationAssertion( "2012-10-17T15:46:40Z") AnnotationAssertion( "GO:0044236") AnnotationAssertion( "GO:0044710") AnnotationAssertion( "Wikipedia:Metabolism") AnnotationAssertion( "metabolism") -AnnotationAssertion( "metabolic process resulting in cell growth") -AnnotationAssertion( "metabolism resulting in cell growth") -AnnotationAssertion( "multicellular organism metabolic process") AnnotationAssertion( "biological_process") -AnnotationAssertion( "single-organism metabolic process") AnnotationAssertion( "GO:0008152") AnnotationAssertion( ) AnnotationAssertion( ) @@ -63888,7 +63254,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions.") AnnotationAssertion(rdfs:label "metabolic process") -SubClassOf( ) +SubClassOf( ) DisjointClasses( ) DisjointClasses( ) @@ -64176,11 +63542,11 @@ AnnotationAssertion( "GO:0008299") AnnotationAssertion(rdfs:label "isoprenoid biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (isoprenoid catabolic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of an isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "GO:0016097") AnnotationAssertion( "isoprenoid breakdown") AnnotationAssertion( "isoprenoid catabolism") @@ -64195,7 +63561,6 @@ AnnotationAssertion( "GO:0008300") AnnotationAssertion(rdfs:label "isoprenoid catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (associative learning) @@ -64560,18 +63925,20 @@ EquivalentClasses( ObjectIntersection # Class: (catabolic process) -AnnotationAssertion(Annotation( "ISBN:0198547684") "The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism.") +AnnotationAssertion(Annotation( "ISBN:0198547684") "A cellular process consisting of the biochemical pathways by which a living organism breaks down substances. This includes the breakdown of carbon compounds with the liberation of energy for use by the cell or organism.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28921"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28932"^^xsd:anyURI) AnnotationAssertion( "jl") AnnotationAssertion( "2012-10-17T15:52:35Z") AnnotationAssertion( "GO:0044243") AnnotationAssertion( "GO:0044712") AnnotationAssertion( "Wikipedia:Catabolism") -AnnotationAssertion( "breakdown") +AnnotationAssertion( "breakdown of chemical") +AnnotationAssertion( "breakdown of molecule") +AnnotationAssertion( "breakdown of substance") AnnotationAssertion( "catabolism") AnnotationAssertion( "degradation") -AnnotationAssertion( "multicellular organismal catabolic process") AnnotationAssertion( "biological_process") -AnnotationAssertion( "single-organism catabolic process") AnnotationAssertion( "GO:0009056") AnnotationAssertion( ) AnnotationAssertion( ) @@ -64601,7 +63968,8 @@ EquivalentClasses( ObjectIntersection # Class: (biosynthetic process) -AnnotationAssertion(Annotation( "GOC:curators") Annotation( "ISBN:0198547684") "The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.") +AnnotationAssertion(Annotation( "GOC:curators") Annotation( "ISBN:0198547684") "A cellular process consisting of the biochemical pathways by which a living organism synthesizes chemical substances. This typically represents the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28932"^^xsd:anyURI) AnnotationAssertion( "jl") AnnotationAssertion( "2012-10-17T15:52:18Z") AnnotationAssertion( "GO:0044274") @@ -64642,11 +64010,11 @@ AnnotationAssertion(rdfs:comment "No AnnotationAssertion(rdfs:label "macromolecule biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) # Class: (fatty acid catabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways resulting in the breakdown of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "Wikipedia:Fatty_acid_degradation") AnnotationAssertion( "fatty acid breakdown") AnnotationAssertion( "fatty acid catabolism") @@ -64655,7 +64023,6 @@ AnnotationAssertion( "GO:0009062") AnnotationAssertion(rdfs:label "fatty acid catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (amino acid catabolic process) @@ -65347,6 +64714,7 @@ SubClassOf( (phospholipid catabolic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "phospholipid breakdown") AnnotationAssertion( "phospholipid catabolism") AnnotationAssertion( "phospholipid degradation") @@ -65354,7 +64722,6 @@ AnnotationAssertion( "GO:0009395") AnnotationAssertion(rdfs:label "phospholipid catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (response to water deprivation) @@ -66592,14 +65959,14 @@ AnnotationAssertion(rdfs:label "regu EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (regulation of cellular ketone metabolic process) +# Class: (regulation of ketone metabolic process) AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "Any process that modulates the chemical reactions and pathways involving any of a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0010565") -AnnotationAssertion(rdfs:label "regulation of cellular ketone metabolic process") +AnnotationAssertion(rdfs:label "regulation of ketone metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (regulation of ketone biosynthetic process) @@ -66608,8 +65975,8 @@ AnnotationAssertion( "GO:0010566") AnnotationAssertion(rdfs:label "regulation of ketone biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) -SubClassOf( ) # Class: (regulation of ketone catabolic process) @@ -68739,9 +68106,10 @@ AnnotationAssertion(Annotation( "Reactome:R-HSA-1222516") AnnotationAssertion(Annotation(rdfs:label "Enzyme-bound ATP is released") "Reactome:R-HSA-164834") AnnotationAssertion(Annotation(rdfs:label "Virion-associated M2 protein mediated ion infusion") "Reactome:R-HSA-168313") -AnnotationAssertion(Annotation(rdfs:label "Protons are translocated from the intermembrane space to the matrix") "Reactome:R-HSA-170026") +AnnotationAssertion(Annotation(rdfs:label "UCP1 imports a proton") "Reactome:R-HSA-170026") AnnotationAssertion(Annotation(rdfs:label "Endosome acidification") "Reactome:R-HSA-74723") AnnotationAssertion(Annotation(rdfs:label "Acidification of Tf:TfR1 containing endosome") "Reactome:R-HSA-917841") +AnnotationAssertion(Annotation(rdfs:label "AAC1 imports a proton") "Reactome:R-HSA-9864415") AnnotationAssertion( "hydrogen ion transmembrane transporter activity") AnnotationAssertion( "proton transporter activity") AnnotationAssertion( "molecular_function") @@ -68753,9 +68121,9 @@ SubClassOf(Annotation( "GO_ # Class: (potassium ion transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:ai") "Enables the transfer of potassium ions (K+) from one side of a membrane to the other.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27521"^^xsd:anyURI) AnnotationAssertion( "GO:0015388") AnnotationAssertion( "GO:0022817") -AnnotationAssertion( "RHEA:29463") AnnotationAssertion( "potassium transporter activity") AnnotationAssertion( "molecular_function") AnnotationAssertion( "potassium uptake permease activity") @@ -68764,35 +68132,32 @@ AnnotationAssertion( "potassium ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "GO_REF:0000090") ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (sodium ion transmembrane transporter activity) -AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "GOC:ai") Annotation( "RHEA:34963") "Enables the transfer of sodium ions (Na+) from one side of a membrane to the other.") +AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "GOC:ai") "Enables the transfer of sodium ions (Na+) from one side of a membrane to the other.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/24076"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27521"^^xsd:anyURI) AnnotationAssertion( "GO:0022816") -AnnotationAssertion( "RHEA:34963") AnnotationAssertion( "sodium transporter activity") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0015081") AnnotationAssertion(rdfs:label "sodium ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (calcium ion transmembrane transporter activity) -AnnotationAssertion(Annotation( "GOC:dgf") Annotation( "RHEA:29671") "Enables the transfer of calcium (Ca) ions from one side of a membrane to the other.") +AnnotationAssertion(Annotation( "GOC:dgf") "Enables the transfer of calcium (Ca) ions from one side of a membrane to the other.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26941"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27521"^^xsd:anyURI) AnnotationAssertion( "MetaCyc:TRANS-RXN-144") -AnnotationAssertion( "RHEA:29671") AnnotationAssertion(Annotation(rdfs:label "CatSper Channel Mediated Calcium Transport") "Reactome:R-HSA-2534359") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0015085") AnnotationAssertion(rdfs:label "calcium ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (organic cation transmembrane transporter activity) @@ -68826,7 +68191,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:ai") "Enables the transfer of bicarbonate from one side of a membrane to the other. Bicarbonate is the hydrogencarbonate ion, HCO3-.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26780"^^xsd:anyURI) -AnnotationAssertion( "RHEA:28695") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27521"^^xsd:anyURI) AnnotationAssertion(Annotation(rdfs:label "BESTs transport cytosolic HCO3- to extracellular region") "Reactome:R-HSA-2752067") AnnotationAssertion( "hydrogencarbonate transmembrane transporter activity") AnnotationAssertion( "molecular_function") @@ -68834,12 +68199,11 @@ AnnotationAssertion( "bicarbonate transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (sulfate transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:ai") "Enables the transfer of sulfate ions, SO4(2-), from one side of a membrane to the other.") -AnnotationAssertion( "RHEA:34983") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27521"^^xsd:anyURI) AnnotationAssertion(Annotation(rdfs:label "Defective SLC26A2 does not cotransport extracellular SO4(2-), H+ to cytosol") "Reactome:R-HSA-3560789") AnnotationAssertion(Annotation(rdfs:label "SLC26A1,2 cotransport SO4(2-), H+ from extracellular region to cytosol") "Reactome:R-HSA-427555") AnnotationAssertion(Annotation(rdfs:label "SLC26A11 transports SO4(2-) from extracellular region to cytosol") "Reactome:R-HSA-8875871") @@ -68850,7 +68214,6 @@ AnnotationAssertion( "sulfate transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "GO_REF:0000090") ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (acetate transmembrane transporter activity) @@ -69017,7 +68380,7 @@ SubClassOf(Annotation( "GO_ AnnotationAssertion(Annotation( "GOC:ai") Annotation( "GOC:mtg_transport") Annotation( "ISBN:0815340729") "Enables the transfer of acidic amino acids from one side of a membrane to the other. Acidic amino acids have side chains with a negative charge at pH 7.3.") AnnotationAssertion( "acidic amino acid transporter activity") -AnnotationAssertion(Annotation(rdfs:label "SLC25A12,13 exchange cytosolic L-Glu for mitochondrial matrix L-Asp") "Reactome:R-HSA-372448") +AnnotationAssertion(Annotation(rdfs:label "SLC25A12,13 exchange L-Glu and L-Asp") "Reactome:R-HSA-372448") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0015172") AnnotationAssertion(rdfs:label "acidic amino acid transmembrane transporter activity") @@ -69154,6 +68517,8 @@ AnnotationAssertion( "fatty-acyl group transporter activity") AnnotationAssertion(Annotation(rdfs:label "Defective SLC27A4 does not transport LCFAs from extracellular region to cytosol") "Reactome:R-HSA-5627891") AnnotationAssertion(Annotation(rdfs:label "SLC27A1,4,6 transport LCFAs from extracellular region to cytosol") "Reactome:R-HSA-879585") +AnnotationAssertion(Annotation(rdfs:label "oxo-DHAs translocate from cytosol to extracellular region") "Reactome:R-HSA-9032315") +AnnotationAssertion(Annotation(rdfs:label "oxo-DPAn-3s translocate from cytosol to extracellular region") "Reactome:R-HSA-9032323") AnnotationAssertion( "fatty acyl transporter activity") AnnotationAssertion( "peroxisomal fatty acyl transporter") AnnotationAssertion( "molecular_function") @@ -69226,9 +68591,9 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:ai") "Enables the transfer of formate from one side of a membrane to the other. Formate is also known as methanoate, the anion HCOO- derived from methanoic (formic) acid.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26941"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27521"^^xsd:anyURI) AnnotationAssertion( "GO:0015659") AnnotationAssertion( "MetaCyc:TRANS-RXN-1") -AnnotationAssertion( "RHEA:29679") AnnotationAssertion( "formate uptake permease activity") AnnotationAssertion( "molecular_function") AnnotationAssertion( "formate uptake transmembrane transporter activity") @@ -69236,7 +68601,6 @@ AnnotationAssertion( "formate transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (propionate transmembrane transporter activity) @@ -70006,7 +69370,6 @@ AnnotationAssertion( "organic acid biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ) # Class: (organic acid catabolic process) @@ -70619,6 +69982,7 @@ SubClassOf( "GOC:bf") Annotation( "GOC:fj") Annotation( "GOC:mah") "Combining with acetylcholine and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.") AnnotationAssertion( "GO:0004981") +AnnotationAssertion(Annotation(rdfs:label "Acetylcholine binds Muscarinic Acetylcholine Receptor M3") "Reactome:R-HSA-400012") AnnotationAssertion( "G protein coupled acetylcholine receptor activity") AnnotationAssertion( "G-protein coupled acetylcholine receptor activity") AnnotationAssertion(Annotation( "GOC:bf") "acetylcholine receptor activity, G-protein coupled") @@ -70659,24 +70023,6 @@ AnnotationAssertion(rdfs:label "pept EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (transcription repressor complex) - -AnnotationAssertion(Annotation( "GOC:mah") "A protein complex that possesses activity that prevents or downregulates transcription.") -AnnotationAssertion( "tb") -AnnotationAssertion( "2014-05-09T13:23:51Z") -AnnotationAssertion( "GO:0090568") -AnnotationAssertion( "GO:0090569") -AnnotationAssertion(Annotation( "GOC:bhm") "transcription factor inhibitor complex") -AnnotationAssertion( "transcriptional repressor complex") -AnnotationAssertion( "cellular_component") -AnnotationAssertion( "cytoplasmic transcriptional repressor complex") -AnnotationAssertion( "nuclear transcriptional repressor complex") -AnnotationAssertion( "GO:0017053") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "transcription repressor complex") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - # Class: (purine nucleotide binding) AnnotationAssertion(Annotation( "GOC:ai") "Binding to a purine nucleotide, a compound consisting of a purine nucleoside esterified with (ortho)phosphate.") @@ -76457,29 +75803,6 @@ SubClassOf( ) SubClassOf( ) -# Class: (nuclear receptor-mediated steroid hormone signaling pathway) - -AnnotationAssertion(Annotation( "GOC:mah") Annotation( "GOC:signaling") "A nuclear receptor-mediated signaling pathway initiated by a steroid binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription.") -AnnotationAssertion(Annotation( "GOC:bf") "steroid hormone receptor signaling pathway") -AnnotationAssertion(Annotation( "GOC:bf") "steroid hormone receptor signalling pathway") -AnnotationAssertion( "intracellular steroid hormone receptor signaling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0030518") -AnnotationAssertion(rdfs:label "nuclear receptor-mediated steroid hormone signaling pathway") -SubClassOf( ) -SubClassOf( ) - -# Class: (intracellular receptor signaling pathway) - -AnnotationAssertion(Annotation( "GOC:bf") Annotation( "GOC:mah") "The series of molecular signals initiated by a ligand binding to a receptor located within a cell.") -AnnotationAssertion( "intracellular receptor mediated signaling pathway") -AnnotationAssertion( "intracellular receptor-mediated signaling pathway") -AnnotationAssertion( "intracellular receptor-mediated signalling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0030522") -AnnotationAssertion(rdfs:label "intracellular receptor signaling pathway") -SubClassOf( ) - # Class: (male genitalia development) AnnotationAssertion(Annotation( "GOC:ems") Annotation( "ISBN:0140512888") "The process whose specific outcome is the progression of the male genitalia over time, from its formation to the mature structure.") @@ -77624,180 +76947,6 @@ AnnotationAssertion( "positive regulation of pseudopodium assembly") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of cellular metabolic process) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27189"^^xsd:anyURI) -AnnotationAssertion( "regulation of cellular metabolism") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031323") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") -AnnotationAssertion(rdfs:label "regulation of cellular metabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) - -# Class: (negative regulation of cellular metabolic process) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27189"^^xsd:anyURI) -AnnotationAssertion( "down regulation of cellular metabolic process") -AnnotationAssertion( "down-regulation of cellular metabolic process") -AnnotationAssertion( "downregulation of cellular metabolic process") -AnnotationAssertion( "negative regulation of cellular metabolism") -AnnotationAssertion( "inhibition of cellular metabolic process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031324") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") -AnnotationAssertion(rdfs:label "negative regulation of cellular metabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) - -# Class: (positive regulation of cellular metabolic process) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27189"^^xsd:anyURI) -AnnotationAssertion( "positive regulation of cellular metabolism") -AnnotationAssertion( "up regulation of cellular metabolic process") -AnnotationAssertion( "up-regulation of cellular metabolic process") -AnnotationAssertion( "upregulation of cellular metabolic process") -AnnotationAssertion( "activation of cellular metabolic process") -AnnotationAssertion( "stimulation of cellular metabolic process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031325") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") -AnnotationAssertion(rdfs:label "positive regulation of cellular metabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) - -# Class: (regulation of cellular biosynthetic process) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27189"^^xsd:anyURI) -AnnotationAssertion( "regulation of cellular anabolism") -AnnotationAssertion( "regulation of cellular biosynthesis") -AnnotationAssertion( "regulation of cellular formation") -AnnotationAssertion( "regulation of cellular synthesis") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031326") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") -AnnotationAssertion(rdfs:label "regulation of cellular biosynthetic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) - -# Class: (negative regulation of cellular biosynthetic process) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27189"^^xsd:anyURI) -AnnotationAssertion( "down regulation of cellular biosynthetic process") -AnnotationAssertion( "down-regulation of cellular biosynthetic process") -AnnotationAssertion( "downregulation of cellular biosynthetic process") -AnnotationAssertion( "negative regulation of cellular anabolism") -AnnotationAssertion( "negative regulation of cellular biosynthesis") -AnnotationAssertion( "negative regulation of cellular formation") -AnnotationAssertion( "negative regulation of cellular synthesis") -AnnotationAssertion( "inhibition of cellular biosynthetic process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031327") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") -AnnotationAssertion(rdfs:label "negative regulation of cellular biosynthetic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) - -# Class: (positive regulation of cellular biosynthetic process) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27189"^^xsd:anyURI) -AnnotationAssertion( "positive regulation of cellular anabolism") -AnnotationAssertion( "positive regulation of cellular biosynthesis") -AnnotationAssertion( "positive regulation of cellular formation") -AnnotationAssertion( "positive regulation of cellular synthesis") -AnnotationAssertion( "up regulation of cellular biosynthetic process") -AnnotationAssertion( "up-regulation of cellular biosynthetic process") -AnnotationAssertion( "upregulation of cellular biosynthetic process") -AnnotationAssertion( "activation of cellular biosynthetic process") -AnnotationAssertion( "stimulation of cellular biosynthetic process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031328") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") -AnnotationAssertion(rdfs:label "positive regulation of cellular biosynthetic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) - -# Class: (regulation of cellular catabolic process) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27189"^^xsd:anyURI) -AnnotationAssertion( "regulation of cellular breakdown") -AnnotationAssertion( "regulation of cellular catabolism") -AnnotationAssertion( "regulation of cellular degradation") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031329") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") -AnnotationAssertion(rdfs:label "regulation of cellular catabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) - -# Class: (negative regulation of cellular catabolic process) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27189"^^xsd:anyURI) -AnnotationAssertion( "down regulation of cellular catabolic process") -AnnotationAssertion( "down-regulation of cellular catabolic process") -AnnotationAssertion( "downregulation of cellular catabolic process") -AnnotationAssertion( "negative regulation of cellular breakdown") -AnnotationAssertion( "negative regulation of cellular catabolism") -AnnotationAssertion( "negative regulation of cellular degradation") -AnnotationAssertion( "inhibition of cellular catabolic process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031330") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") -AnnotationAssertion(rdfs:label "negative regulation of cellular catabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) - -# Class: (positive regulation of cellular catabolic process) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27189"^^xsd:anyURI) -AnnotationAssertion( "positive regulation of cellular breakdown") -AnnotationAssertion( "positive regulation of cellular catabolism") -AnnotationAssertion( "positive regulation of cellular degradation") -AnnotationAssertion( "up regulation of cellular catabolic process") -AnnotationAssertion( "up-regulation of cellular catabolic process") -AnnotationAssertion( "upregulation of cellular catabolic process") -AnnotationAssertion( "activation of cellular catabolic process") -AnnotationAssertion( "stimulation of cellular catabolic process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031331") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") -AnnotationAssertion(rdfs:label "positive regulation of cellular catabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) - # Class: (negative regulation of protein-containing complex assembly) AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents, or reduces the frequency, rate or extent of protein complex assembly.") @@ -77995,6 +77144,7 @@ AnnotationAssertion( "inhibition of protein modification") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0031400") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of protein modification process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -78008,6 +77158,7 @@ AnnotationAssertion( "stimulation of protein modification") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0031401") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of protein modification process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -78259,7 +77410,7 @@ AnnotationAssertion( "regulation of glucocorticoid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) # Class: (negative regulation of glucocorticoid metabolic process) @@ -78274,7 +77425,7 @@ AnnotationAssertion( "GO:0031944") AnnotationAssertion(rdfs:label "negative regulation of glucocorticoid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -78292,7 +77443,7 @@ AnnotationAssertion( "GO:0031945") AnnotationAssertion(rdfs:label "positive regulation of glucocorticoid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -78341,15 +77492,17 @@ SubClassOf( (regulation of glucocorticoid catabolic process) AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glucocorticoids.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/29024"^^xsd:anyURI) AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0031949") AnnotationAssertion(rdfs:label "regulation of glucocorticoid catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) # Class: (negative regulation of glucocorticoid catabolic process) AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glucocorticoids.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/29024"^^xsd:anyURI) AnnotationAssertion( "down regulation of glucocorticoid catabolic process") AnnotationAssertion( "down-regulation of glucocorticoid catabolic process") AnnotationAssertion( "downregulation of glucocorticoid catabolic process") @@ -78358,7 +77511,7 @@ AnnotationAssertion( "GO:0031950") AnnotationAssertion(rdfs:label "negative regulation of glucocorticoid catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) # Class: (positive regulation of glucocorticoid catabolic process) @@ -78372,17 +77525,7 @@ AnnotationAssertion( "GO:0031951") AnnotationAssertion(rdfs:label "positive regulation of glucocorticoid catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (nuclear receptor-mediated corticosteroid signaling pathway) - -AnnotationAssertion(Annotation( "PMID:11027914") Annotation( "PMID:12606724") "A nuclear receptor-mediated signaling pathway initiated by a corticosteroid binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription.") -AnnotationAssertion( "corticosteroid receptor signalling pathway") -AnnotationAssertion( "intracellular corticosteroid receptor signaling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0031958") -AnnotationAssertion(rdfs:label "nuclear receptor-mediated corticosteroid signaling pathway") -SubClassOf( ) +SubClassOf( ) # Class: (response to corticosteroid) @@ -79289,7 +78432,7 @@ AnnotationAssertion( "GO:0032345") AnnotationAssertion(rdfs:label "negative regulation of aldosterone metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -79307,7 +78450,7 @@ AnnotationAssertion( "GO:0032346") AnnotationAssertion(rdfs:label "positive regulation of aldosterone metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -79407,7 +78550,7 @@ AnnotationAssertion( "GO:0032353") AnnotationAssertion(rdfs:label "negative regulation of hormone biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -81190,36 +80333,6 @@ AnnotationAssertion( "positive regulation of purine nucleotide catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of intracellular steroid hormone receptor signaling pathway) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway.") -AnnotationAssertion(Annotation( "GOC:bf") "regulation of steroid hormone receptor signaling pathway") -AnnotationAssertion( "regulation of steroid hormone receptor signalling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0033143") -AnnotationAssertion(rdfs:label "regulation of intracellular steroid hormone receptor signaling pathway") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (negative regulation of intracellular steroid hormone receptor signaling pathway) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway.") -AnnotationAssertion(Annotation( "GOC:bf") "negative regulation of steroid hormone receptor signaling pathway") -AnnotationAssertion(Annotation( "GOC:bf") "negative regulation of steroid hormone receptor signalling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0033144") -AnnotationAssertion(rdfs:label "negative regulation of intracellular steroid hormone receptor signaling pathway") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (positive regulation of intracellular steroid hormone receptor signaling pathway) - -AnnotationAssertion(Annotation( "GOC:mah") "Any process that activates or increases the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway.") -AnnotationAssertion(Annotation( "GOC:bf") "positive regulation of steroid hormone receptor signaling pathway") -AnnotationAssertion( "positive regulation of steroid hormone receptor signalling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0033145") -AnnotationAssertion(rdfs:label "positive regulation of intracellular steroid hormone receptor signaling pathway") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (V(D)J recombination) AnnotationAssertion(Annotation( "GOC:add") Annotation( "ISBN:0781700221") Annotation( "ISBN:0781735149") "The process in which immune receptor V, D, and J, or V and J gene segments, depending on the specific receptor, are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS).") @@ -85789,8 +84902,9 @@ EquivalentClasses( ObjectIntersection # Class: (xenobiotic catabolic process) -AnnotationAssertion(Annotation( "GOC:jl") Annotation( "GOC:krc") "The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.") +AnnotationAssertion(Annotation( "GOC:jl") Annotation( "GOC:krc") "The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to the organism exposed to it, carried out by individual cells. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/19460"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "GO:0042737") AnnotationAssertion( "GO:0042738") AnnotationAssertion( "xenobiotic breakdown") @@ -85809,20 +84923,17 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "xenobiotic catabolic process") SubClassOf( ) -SubClassOf( ) -# Class: (cellular ketone metabolic process) +# Class: (ketone metabolic process) AnnotationAssertion(Annotation( "GOC:jl") Annotation( "ISBN:0787650153") "The chemical reactions and pathways involving any of a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms, as carried out by individual cells. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "ketone metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0042180") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "cellular ketone metabolic process") +AnnotationAssertion(rdfs:label "ketone metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) # Class: (ketone biosynthetic process) @@ -85836,7 +84947,6 @@ AnnotationAssertion( "ketone biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ) # Class: (ketone catabolic process) @@ -85849,7 +84959,6 @@ AnnotationAssertion( "GO:0042182") AnnotationAssertion(rdfs:label "ketone catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) SubClassOf( ) # Class: (formate catabolic process) @@ -85886,22 +84995,23 @@ AnnotationAssertion( "terpene metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (cellular modified amino acid catabolic process) +# Class: (modified amino acid catabolic process) AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways resulting in the breakdown of compounds derived from amino acids, organic acids containing one or more amino substituents.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "amino acid derivative catabolic process") AnnotationAssertion( "cellular amino acid derivative breakdown") AnnotationAssertion( "cellular amino acid derivative catabolic process") AnnotationAssertion( "cellular amino acid derivative catabolism") AnnotationAssertion( "cellular amino acid derivative degradation") AnnotationAssertion(Annotation( "GOC:mah") "cellular modified amino acid breakdown") +AnnotationAssertion(Annotation( "GOC:mah") "cellular modified amino acid catabolic process") AnnotationAssertion(Annotation( "GOC:mah") "cellular modified amino acid catabolism") AnnotationAssertion(Annotation( "GOC:mah") "cellular modified amino acid degradation") -AnnotationAssertion(Annotation( "GOC:mah") "modified amino acid catabolic process") AnnotationAssertion(Annotation( "GOC:mah") "modified amino acid catabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0042219") -AnnotationAssertion(rdfs:label "cellular modified amino acid catabolic process") +AnnotationAssertion(rdfs:label "modified amino acid catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (response to chemical) @@ -86266,9 +85376,10 @@ AnnotationAssertion( "regulation of membrane potential") SubClassOf( ObjectSomeValuesFrom( )) -# Class: (cellular modified amino acid biosynthetic process) +# Class: (modified amino acid biosynthetic process) AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways resulting in the formation of compounds derived from amino acids, organic acids containing one or more amino substituents.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "amino acid derivative biosynthetic process") AnnotationAssertion( "cellular amino acid derivative anabolism") AnnotationAssertion( "cellular amino acid derivative biosynthesis") @@ -86281,7 +85392,7 @@ AnnotationAssertion(Annotation( "GOC:mah") "cellular modified amino acid synthesis") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0042398") -AnnotationAssertion(rdfs:label "cellular modified amino acid biosynthetic process") +AnnotationAssertion(rdfs:label "modified amino acid biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (biogenic amine biosynthetic process) @@ -86298,15 +85409,16 @@ AnnotationAssertion(rdfs:label "biog SubClassOf( ) SubClassOf( ) -# Class: (cellular biogenic amine catabolic process) +# Class: (biogenic amine catabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:jl") Annotation( "ISBN:0198506732") "The chemical reactions and pathways occurring at the level of individual cells resulting in the breakdown of biogenic amines, any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "biogenic amine breakdown") AnnotationAssertion( "biogenic amine catabolism") AnnotationAssertion( "biogenic amine degradation") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0042402") -AnnotationAssertion(rdfs:label "cellular biogenic amine catabolic process") +AnnotationAssertion(rdfs:label "biogenic amine catabolic process") SubClassOf( ) # Class: (thyroid hormone metabolic process) @@ -87335,17 +86447,6 @@ AnnotationAssertion(rdfs:label "amid EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (nuclear receptor-mediated glucocorticoid signaling pathway) - -AnnotationAssertion(Annotation( "GOC:mah") "A nuclear receptor-mediated signaling pathway initiated by a glucocorticoid binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription.") -AnnotationAssertion( "glucocorticoid receptor signaling pathway") -AnnotationAssertion( "glucocorticoid receptor signalling pathway") -AnnotationAssertion( "intracellular glucocorticoid receptor signaling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0042921") -AnnotationAssertion(rdfs:label "nuclear receptor-mediated glucocorticoid signaling pathway") -SubClassOf( ) - # Class: (neuropeptide binding) AnnotationAssertion(Annotation( "PMID:10414961") Annotation( "PMID:38337033") "Interacting selectively and non-covalently and stoichiometrically with neuropeptides, peptides with direct synaptic effects (peptide neurotransmitters) or indirect modulatory effects on the nervous system (peptide neuromodulators).") @@ -88046,19 +87147,22 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) DisjointClasses( ) -# Class: (non-membrane-bounded organelle) +# Class: (membraneless organelle) AnnotationAssertion(Annotation( "GOC:go_curators") "Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane. Includes ribosomes, the cytoskeleton and chromosomes.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/21881"^^xsd:anyURI) AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28153"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/29106"^^xsd:anyURI) AnnotationAssertion( "NIF_Subcellular:sao1456184038") +AnnotationAssertion( "membrane-less organelle") +AnnotationAssertion( "non-membrane-bounded organelle") AnnotationAssertion( "non-membrane-enclosed organelle") AnnotationAssertion( "cellular_component") AnnotationAssertion( "biological condensate") AnnotationAssertion( "GO:0043228") AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "non-membrane-bounded organelle") +AnnotationAssertion(rdfs:label "membraneless organelle") SubClassOf( ) # Class: (intracellular organelle) @@ -88095,14 +87199,16 @@ AnnotationAssertion(rdfs:label "intr EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (intracellular non-membrane-bounded organelle) +# Class: (intracellular membraneless organelle) AnnotationAssertion(Annotation( "GOC:go_curators") "Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes, the cytoskeleton and chromosomes.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/29106"^^xsd:anyURI) +AnnotationAssertion( "intracellular non-membrane-bounded organelle") AnnotationAssertion( "intracellular non-membrane-enclosed organelle") AnnotationAssertion( "cellular_component") AnnotationAssertion( "GO:0043232") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "intracellular non-membrane-bounded organelle") +AnnotationAssertion(rdfs:label "intracellular membraneless organelle") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (organelle lumen) @@ -88195,13 +87301,15 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) -# Class: (extracellular non-membrane-bounded organelle) +# Class: (extracellular membraneless organelle) AnnotationAssertion(Annotation( "GOC:jl") "Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring outside the cell.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/29106"^^xsd:anyURI) +AnnotationAssertion( "extracellular non-membrane-bounded organelle") AnnotationAssertion( "extracellular non-membrane-enclosed organelle") AnnotationAssertion( "cellular_component") AnnotationAssertion( "GO:0043264") -AnnotationAssertion(rdfs:label "extracellular non-membrane-bounded organelle") +AnnotationAssertion(rdfs:label "extracellular membraneless organelle") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (regulation of potassium ion transport) @@ -88612,27 +87720,6 @@ AnnotationAssertion( "proteoglycan binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (steroid hormone receptor signaling pathway) - -AnnotationAssertion(Annotation( "PMID:12606724") "The series of molecular signals mediated by a steroid hormone binding to a receptor.") -AnnotationAssertion( "steroid hormone mediated signalling") -AnnotationAssertion( "steroid hormone-mediated signaling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0043401") -AnnotationAssertion(rdfs:label "steroid hormone receptor signaling pathway") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (glucocorticoid mediated signaling pathway) - -AnnotationAssertion(Annotation( "PMID:15240347") "The series of molecular signals mediated by the detection of a glucocorticoid hormone.") -AnnotationAssertion( "glucocorticoid mediated signalling") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0043402") -AnnotationAssertion(rdfs:label "glucocorticoid mediated signaling pathway") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (skeletal muscle tissue regeneration) AnnotationAssertion(Annotation( "GOC:ef") Annotation( "GOC:mtg_muscle") Annotation( "PMID:12021255") Annotation( "PMID:16607119") "The regrowth of skeletal muscle tissue to repair injured or damaged muscle fibers in the postnatal stage.") @@ -88690,27 +87777,6 @@ AnnotationAssertion(rdfs:label "nega EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (negative regulation of DNA-binding transcription factor activity) - -AnnotationAssertion(Annotation( "GOC:jl") "Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription.") -AnnotationAssertion( "2011-07-15T10:56:12Z") -AnnotationAssertion( "GO:1904168") -AnnotationAssertion( "GO:2000824") -AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "negative regulation of transcription factor activity") -AnnotationAssertion( "down regulation of transcription factor activity") -AnnotationAssertion( "down-regulation of transcription factor activity") -AnnotationAssertion( "downregulation of transcription factor activity") -AnnotationAssertion( "negative regulation of DNA binding transcription factor activity") -AnnotationAssertion( "negative regulation of sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "inhibition of transcription factor activity") -AnnotationAssertion( "negative regulation of androgen receptor activity") -AnnotationAssertion( "negative regulation of thyroid hormone receptor activity") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0043433") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "negative regulation of DNA-binding transcription factor activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (response to peptide hormone) AnnotationAssertion(Annotation( "PMID:11027914") Annotation( "PMID:15134857") Annotation( "Wikipedia:Peptide_hormone") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals.") @@ -88738,17 +87804,16 @@ AnnotationAssertion(rdfs:label "oxoa EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (cellular alkane metabolic process) +# Class: (alkane metabolic process) AnnotationAssertion(Annotation( "GOC:jl") Annotation( "Wikipedia:Alkane") "The chemical reactions and pathways involving an alkane, any acyclic branched or unbranched hydrocarbon having the general formula CnH2n+2, as carried out by individual cells.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "alkane metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0043446") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "cellular alkane metabolic process") +AnnotationAssertion(rdfs:label "alkane metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) # Class: (alkane biosynthetic process) @@ -88761,7 +87826,6 @@ AnnotationAssertion( "GO:0043447") AnnotationAssertion(rdfs:label "alkane biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (alkane catabolic process) @@ -88773,7 +87837,6 @@ AnnotationAssertion( "GO:0043448") AnnotationAssertion(rdfs:label "alkane catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (regulation of secondary metabolic process) @@ -88799,7 +87862,7 @@ AnnotationAssertion( "GO:0043467") AnnotationAssertion(rdfs:label "regulation of generation of precursor metabolites and energy") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) # Class: (regulation of carbohydrate catabolic process) @@ -88991,15 +88054,6 @@ SubClassOf( ObjectComplementOf(Object SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses( ObjectSomeValuesFrom( )) -# Class: (sequence-specific DNA binding) - -AnnotationAssertion(Annotation( "GOC:jl") "Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.") -AnnotationAssertion( "sequence specific DNA binding") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0043565") -AnnotationAssertion(rdfs:label "sequence-specific DNA binding") -SubClassOf( ) - # Class: (regulation of respiratory gaseous exchange) AnnotationAssertion(Annotation( "GOC:jl") "Any process that modulates the frequency, rate or extent of the process of gaseous exchange between an organism and its environment.") @@ -89390,19 +88444,6 @@ AnnotationAssertion(rdfs:label "tran SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (cellular metabolic process) - -AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways by which individual cells transform chemical substances.") -AnnotationAssertion( "cellular metabolism") -AnnotationAssertion( "biological_process") -AnnotationAssertion(Annotation( "GOC:mah") "intermediary metabolism") -AnnotationAssertion( "GO:0044237") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term.") -AnnotationAssertion(rdfs:label "cellular metabolic process") -SubClassOf( ) -SubClassOf( ) - # Class: (primary metabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.") @@ -89419,19 +88460,6 @@ AnnotationAssertion( "primary metabolic process") SubClassOf( ) -# Class: (cellular lipid catabolic process) - -AnnotationAssertion(Annotation( "GOC:jl") "The chemical reactions and pathways resulting in the breakdown of lipids, as carried out by individual cells.") -AnnotationAssertion( "cellular lipid breakdown") -AnnotationAssertion( "cellular lipid catabolism") -AnnotationAssertion( "cellular lipid degradation") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0044242") -AnnotationAssertion(rdfs:label "cellular lipid catabolic process") -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) - # Class: (cellular catabolic process) AnnotationAssertion(Annotation( "GOC:jl") "The chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells.") @@ -89441,35 +88469,8 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0044248") AnnotationAssertion(rdfs:label "cellular catabolic process") +SubClassOf( ) SubClassOf( ) -SubClassOf( ) - -# Class: (cellular biosynthetic process) - -AnnotationAssertion(Annotation( "GOC:jl") "The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27052"^^xsd:anyURI) -AnnotationAssertion( "cellular anabolism") -AnnotationAssertion( "cellular biosynthesis") -AnnotationAssertion( "cellular formation") -AnnotationAssertion( "cellular synthesis") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0044249") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term.") -AnnotationAssertion(rdfs:label "cellular biosynthetic process") -SubClassOf( ) -SubClassOf( ) - -# Class: (cellular lipid metabolic process) - -AnnotationAssertion(Annotation( "GOC:jl") "The chemical reactions and pathways involving lipids, as carried out by individual cells.") -AnnotationAssertion( "cellular lipid metabolism") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0044255") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "cellular lipid metabolic process") -SubClassOf( ) -SubClassOf( ) # Class: (intestinal lipid catabolic process) @@ -89495,7 +88496,6 @@ AnnotationAssertion( "GO:0044272") AnnotationAssertion(rdfs:label "sulfur compound biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (sulfur compound catabolic process) @@ -91430,7 +90430,7 @@ AnnotationAssertion( "GO:0045721") AnnotationAssertion(rdfs:label "negative regulation of gluconeogenesis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) # Class: (positive regulation of gluconeogenesis) @@ -91445,7 +90445,7 @@ AnnotationAssertion( "GO:0045722") AnnotationAssertion(rdfs:label "positive regulation of gluconeogenesis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) # Class: (positive regulation of fatty acid biosynthetic process) @@ -91496,8 +90496,8 @@ AnnotationAssertion( "positive regulation of glycogen biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ) # Class: (positive regulation of translation) @@ -91687,9 +90687,10 @@ AnnotationAssertion(rdfs:label "posi EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (negative regulation of cellular amino acid metabolic process) +# Class: (negative regulation of amino acid metabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving amino acid.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "down regulation of amino acid metabolic process") AnnotationAssertion( "down-regulation of amino acid metabolic process") AnnotationAssertion( "downregulation of amino acid metabolic process") @@ -91697,10 +90698,9 @@ AnnotationAssertion( "inhibition of amino acid metabolic process") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0045763") -AnnotationAssertion(rdfs:label "negative regulation of cellular amino acid metabolic process") +AnnotationAssertion(rdfs:label "negative regulation of amino acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) # Class: (positive regulation of amino acid metabolic process) @@ -91717,7 +90717,6 @@ AnnotationAssertion( "positive regulation of amino acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) # Class: (regulation of angiogenesis) @@ -91914,6 +90913,7 @@ SubClassOf( (negative regulation of glycogen catabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glycogen.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/29024"^^xsd:anyURI) AnnotationAssertion( "down regulation of glycogen catabolic process") AnnotationAssertion( "down-regulation of glycogen catabolic process") AnnotationAssertion( "downregulation of glycogen catabolic process") @@ -91927,12 +90927,13 @@ AnnotationAssertion( "negative regulation of glycogen catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) # Class: (positive regulation of glycogen catabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glycogen.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/29024"^^xsd:anyURI) AnnotationAssertion( "positive regulation of glycogen breakdown") AnnotationAssertion( "positive regulation of glycogen catabolism") AnnotationAssertion( "positive regulation of glycogen degradation") @@ -91947,7 +90948,7 @@ AnnotationAssertion( "positive regulation of glycogen catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) # Class: (negative regulation of heart contraction) @@ -92233,56 +91234,6 @@ AnnotationAssertion(rdfs:label "posi EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (negative regulation of DNA-templated transcription) - -AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:txnOH") "Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.") -AnnotationAssertion( "GO:0016481") -AnnotationAssertion( "GO:0032582") -AnnotationAssertion( "GO:0061021") -AnnotationAssertion( "down regulation of transcription, DNA-dependent") -AnnotationAssertion( "down-regulation of transcription, DNA-dependent") -AnnotationAssertion( "downregulation of transcription, DNA-dependent") -AnnotationAssertion( "negative regulation of cellular transcription, DNA-dependent") -AnnotationAssertion(Annotation( "GOC:txnOH") "negative regulation of transcription, DNA-dependent") -AnnotationAssertion( "negative regulation of transcription, DNA-templated") -AnnotationAssertion( "inhibition of transcription, DNA-dependent") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "down regulation of gene-specific transcription") -AnnotationAssertion( "down-regulation of gene-specific transcription") -AnnotationAssertion( "downregulation of gene-specific transcription") -AnnotationAssertion( "inhibition of gene-specific transcription") -AnnotationAssertion( "negative regulation of gene-specific transcription") -AnnotationAssertion( "transcription repressor activity") -AnnotationAssertion( "GO:0045892") -AnnotationAssertion(rdfs:label "negative regulation of DNA-templated transcription") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (positive regulation of DNA-templated transcription) - -AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:txnOH") "Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.") -AnnotationAssertion( "GO:0043193") -AnnotationAssertion( "GO:0045941") -AnnotationAssertion( "GO:0061020") -AnnotationAssertion( "positive regulation of cellular transcription, DNA-dependent") -AnnotationAssertion(Annotation( "GOC:txnOH") "positive regulation of transcription, DNA-dependent") -AnnotationAssertion( "positive regulation of transcription, DNA-templated") -AnnotationAssertion( "up regulation of transcription, DNA-dependent") -AnnotationAssertion( "up-regulation of transcription, DNA-dependent") -AnnotationAssertion( "upregulation of transcription, DNA-dependent") -AnnotationAssertion( "activation of transcription, DNA-dependent") -AnnotationAssertion( "stimulation of gene-specific transcription") -AnnotationAssertion( "stimulation of transcription, DNA-dependent") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "activation of gene-specific transcription") -AnnotationAssertion( "positive regulation of gene-specific transcription") -AnnotationAssertion( "transcription activator activity") -AnnotationAssertion( "up regulation of gene-specific transcription") -AnnotationAssertion( "up-regulation of gene-specific transcription") -AnnotationAssertion( "upregulation of gene-specific transcription") -AnnotationAssertion( "GO:0045893") -AnnotationAssertion(rdfs:label "positive regulation of DNA-templated transcription") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (negative regulation of translational elongation) AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that stops, prevents, or reduces the frequency, rate or extent of translational elongation.") @@ -92699,31 +91650,6 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) -# Class: (positive regulation of transcription by RNA polymerase II) - -AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:txnOH") "Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.") -AnnotationAssertion( "GO:0010552") -AnnotationAssertion( "GO:0045817") -AnnotationAssertion( "activation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "positive regulation of transcription from Pol II promoter") -AnnotationAssertion( "positive regulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "stimulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "up regulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "up-regulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "upregulation of transcription from RNA polymerase II promoter") -AnnotationAssertion( "stimulation of global transcription from RNA polymerase II promoter") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "activation of global transcription from RNA polymerase II promoter") -AnnotationAssertion( "positive regulation of gene-specific transcription from RNA polymerase II promoter") -AnnotationAssertion( "positive regulation of global transcription from Pol II promoter") -AnnotationAssertion( "positive regulation of transcription from RNA polymerase II promoter, global") -AnnotationAssertion( "up regulation of global transcription from RNA polymerase II promoter") -AnnotationAssertion( "up-regulation of global transcription from RNA polymerase II promoter") -AnnotationAssertion( "upregulation of global transcription from RNA polymerase II promoter") -AnnotationAssertion( "GO:0045944") -AnnotationAssertion(rdfs:label "positive regulation of transcription by RNA polymerase II") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (negative regulation of translational initiation) AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that stops, prevents, or reduces the frequency, rate or extent of translational initiation.") @@ -93304,7 +92230,6 @@ AnnotationAssertion(rdfs:label "alde EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ) # Class: (aldehyde catabolic process) @@ -93316,7 +92241,6 @@ AnnotationAssertion( "GO:0046185") AnnotationAssertion(rdfs:label "aldehyde catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (phenol-containing compound biosynthetic process) @@ -93550,6 +92474,7 @@ EquivalentClasses( ObjectIntersection # Class: (membrane lipid catabolic process) AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways resulting in the breakdown of membrane lipids, any lipid found in or associated with a biological membrane.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion(Annotation( "GOC:tb") "membrane lipid peroxidation") AnnotationAssertion( "membrane lipid breakdown") AnnotationAssertion( "membrane lipid catabolism") @@ -93557,8 +92482,8 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0046466") AnnotationAssertion(rdfs:label "membrane lipid catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) # Class: (membrane lipid biosynthetic process) @@ -93570,9 +92495,9 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0046467") AnnotationAssertion(rdfs:label "membrane lipid biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf( ) # Class: (glycosylceramide biosynthetic process) @@ -94407,7 +93332,7 @@ AnnotationAssertion( "GO:0046885") AnnotationAssertion(rdfs:label "regulation of hormone biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) # Class: (positive regulation of hormone biosynthetic process) @@ -94426,7 +93351,7 @@ AnnotationAssertion( "GO:0046886") AnnotationAssertion(rdfs:label "positive regulation of hormone biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -97759,6 +96684,7 @@ AnnotationAssertion( "stimulation of peptidyl-tyrosine phosphorylation") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0050731") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of peptidyl-tyrosine phosphorylation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -97784,7 +96710,7 @@ AnnotationAssertion( "GO:0050746") AnnotationAssertion(rdfs:label "regulation of lipoprotein metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) # Class: (positive regulation of lipoprotein metabolic process) @@ -97799,7 +96725,7 @@ AnnotationAssertion( "GO:0050747") AnnotationAssertion(rdfs:label "positive regulation of lipoprotein metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) # Class: (negative regulation of lipoprotein metabolic process) @@ -97813,7 +96739,7 @@ AnnotationAssertion( "GO:0050748") AnnotationAssertion(rdfs:label "negative regulation of lipoprotein metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) # Class: (regulation of phagocytosis) @@ -99502,44 +98428,6 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (regulation of DNA-binding transcription factor activity) - -AnnotationAssertion(Annotation( "GOC:ai") "Any process that modulates the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription.") -AnnotationAssertion( "GO:1904167") -AnnotationAssertion( "GO:2000823") -AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "regulation of transcription factor activity") -AnnotationAssertion( "regulation of DNA binding transcription factor activity") -AnnotationAssertion( "regulation of sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "regulation of androgen receptor activity") -AnnotationAssertion( "regulation of thyroid hormone receptor activity") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0051090") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "regulation of DNA-binding transcription factor activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (positive regulation of DNA-binding transcription factor activity) - -AnnotationAssertion(Annotation( "GOC:ai") "Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription.") -AnnotationAssertion( "rph") -AnnotationAssertion( "2015-04-22T12:22:16Z") -AnnotationAssertion( "GO:1904169") -AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "positive regulation of transcription factor activity") -AnnotationAssertion( "positive regulation of DNA binding transcription factor activity") -AnnotationAssertion( "positive regulation of sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "up regulation of transcription factor activity") -AnnotationAssertion( "up-regulation of transcription factor activity") -AnnotationAssertion( "upregulation of transcription factor activity") -AnnotationAssertion( "activation of transcription factor activity") -AnnotationAssertion( "positive regulation of thyroid hormone receptor activity") -AnnotationAssertion( "stimulation of transcription factor activity") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0051091") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "positive regulation of DNA-binding transcription factor activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (negative regulation of developmental process) AnnotationAssertion(Annotation( "GOC:ai") "Any process that stops, prevents or reduces the rate or extent of development, the biological process whose specific outcome is the progression of an organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).") @@ -109851,13 +108739,13 @@ SubClassOf( ObjectSomeValuesFrom( (cytosolic lipolysis) AnnotationAssertion(Annotation( "GOC:autophagy") "The chemical reactions and pathways resulting in the breakdown of lipid droplets and hydrolysis of stored triglycerides occurring through the orchestrated activation of cytosolic lipases.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "dph") AnnotationAssertion( "2015-07-08T13:42:15Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0061725") AnnotationAssertion(rdfs:label "cytosolic lipolysis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (secretory granule maturation) @@ -111410,8 +110298,8 @@ AnnotationAssertion( "GO:0070857") AnnotationAssertion(rdfs:label "regulation of bile acid biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -111432,8 +110320,8 @@ AnnotationAssertion( "GO:0070858") AnnotationAssertion(rdfs:label "negative regulation of bile acid biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -111455,8 +110343,8 @@ AnnotationAssertion( "GO:0070859") AnnotationAssertion(rdfs:label "positive regulation of bile acid biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -115699,7 +114587,6 @@ AnnotationAssertion( "GO:0072592") AnnotationAssertion(rdfs:label "oxygen metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (establishment of protein localization to organelle) @@ -117510,6 +116397,7 @@ SubClassOf( "GOC:sjw") Annotation( "PMID:7583672") "Binding to an organic cyclic compound, any molecular entity that contains carbon arranged in a cyclic molecular structure.") AnnotationAssertion( "pr") AnnotationAssertion( "2011-09-23T02:31:01Z") +AnnotationAssertion(Annotation(rdfs:label "BH2 binding can lead to eNOS uncoupling") "Reactome:R-HSA-1497796") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0097159") AnnotationAssertion(rdfs:label "organic cyclic compound binding") @@ -118315,19 +117203,6 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (ligand-activated transcription factor activity) - -AnnotationAssertion(Annotation( "GOC:dos") Annotation( "PMID:25568920") Annotation( "PMID:8735275") "A DNA-binding transcription factor activity regulated by binding to a ligand and that modulates the transcription of specific genes and gene sets. Examples include the lac and trp repressors in E.coli and steroid hormone receptors.") -AnnotationAssertion( "dos") -AnnotationAssertion( "2013-10-17T15:51:30Z") -AnnotationAssertion( "direct ligand regulated sequence-specific DNA binding transcription factor activity") -AnnotationAssertion( "transcription factor activity, direct ligand regulated sequence-specific DNA binding") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0098531") -AnnotationAssertion(rdfs:comment "For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.") -AnnotationAssertion(rdfs:label "ligand-activated transcription factor activity") -SubClassOf( ) - # Class: (defense response to other organism) AnnotationAssertion(Annotation( "GOC:dos") "Reactions triggered in response to the presence of another organism that act to protect the cell or organism from damage caused by that organism.") @@ -120785,18 +119660,20 @@ AnnotationAssertion( "negative regulation of imaginal disc-derived leg joint morphogenesis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (cellular anatomical entity) +# Class: (cellular anatomical structure) -AnnotationAssertion(Annotation( "GOC:kmv") "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex.") +AnnotationAssertion(Annotation( "GOC:kmv") "A part of a cellular organism consisting of a material entity with granularity above the level of a protein complex but below that of an anatomical system. Note that cellular organisms exclude viruses.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/24200"^^xsd:anyURI) AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28978"^^xsd:anyURI) AnnotationAssertion( "kmv") AnnotationAssertion( "2019-08-12T18:01:37Z") +AnnotationAssertion( "cellular anatomical entity") AnnotationAssertion( "cellular_component") AnnotationAssertion( "GO:0110165") AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "cellular anatomical entity") +AnnotationAssertion(rdfs:label "cellular anatomical structure") SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -121488,26 +120365,6 @@ AnnotationAssertion( "catalytic activity, acting on a glycoprotein") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (transcription regulator activity) - -AnnotationAssertion(Annotation( "GOC:pg") Annotation( "GOC:txnOH-2018") Annotation( "Wikipedia:Transcription_factor") "A molecular function that controls the rate, timing and/or magnitude of gene transcription. The function of transcriptional regulators is to modulate gene expression at the transcription step so that they are expressed in the right cell at the right time and in the right amount throughout the life of the cell and the organism. Genes are transcriptional units, and include bacterial operons.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/13588"^^xsd:anyURI) -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/23609"^^xsd:anyURI) -AnnotationAssertion( "pg") -AnnotationAssertion( "2017-10-18T07:05:44Z") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0140110") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "transcription regulator activity") -SubClassOf( ) - # Class: (extracellular vesicle biogenesis) AnnotationAssertion(Annotation( "PMID:28736435") "The assembly and secretion a set of components to form an extracellular vesicule, a membrane-bounded vesicle that is released into the extracellular region. Extracellular vesicles include exosomes, microvesicles and apoptotic bodies, based on the mechanism by which they are released from cells and differentiated based on their size and content.") @@ -121952,18 +120809,20 @@ AnnotationAssertion(rdfs:label "radi EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (non-membrane-bounded organelle assembly) +# Class: (membraneless organelle assembly) AnnotationAssertion(Annotation( "PMID:28225081") "The aggregation, arrangement and bonding together of a set of components to form a non-membrane-bounded organelle.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/21939"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/29106"^^xsd:anyURI) AnnotationAssertion( "pg") AnnotationAssertion( "2021-08-09T15:30:06Z") +AnnotationAssertion( "non-membrane-bounded organelle assembly") AnnotationAssertion( "non-membrane-bounded organelle formation") AnnotationAssertion( "non-membrane-enclosed organelle assembly") AnnotationAssertion( "non-membrane-enclosed organelle formation") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0140694") -AnnotationAssertion(rdfs:label "non-membrane-bounded organelle assembly") +AnnotationAssertion(rdfs:label "membraneless organelle assembly") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (ammonium excretion) @@ -122074,18 +120933,6 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "nucleic acid catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (nuclear receptor-mediated signaling pathway) - -AnnotationAssertion(Annotation( "PMID:25614732") "The series of molecular signals initiated by a signaling molecule binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27599"^^xsd:anyURI) -AnnotationAssertion( "pg") -AnnotationAssertion( "2024-04-12T13:08:13Z") -AnnotationAssertion( "nuclear receptor signaling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0141193") -AnnotationAssertion(rdfs:label "nuclear receptor-mediated signaling pathway") -SubClassOf( ) - # Class: (regulation of protein localization to lysosome) AnnotationAssertion(Annotation( "GOC:aruk") Annotation( "GOC:bc") Annotation( "PMID:24305806") "Any process that modulates the frequency, rate or extent of protein localization to lysosome.") @@ -123401,55 +122248,6 @@ AnnotationAssertion( "positive regulation of bone mineralization involved in bone maturation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of glucocorticoid mediated signaling pathway) - -AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that modulates the frequency, rate or extent of glucocorticoid mediated signaling pathway.") -AnnotationAssertion( "hjd") -AnnotationAssertion( "2012-03-08T08:33:16Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "regulation of glucocorticoid mediated signalling") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1900169") -AnnotationAssertion(rdfs:label "regulation of glucocorticoid mediated signaling pathway") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (negative regulation of glucocorticoid mediated signaling pathway) - -AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that stops, prevents or reduces the frequency, rate or extent of glucocorticoid mediated signaling pathway.") -AnnotationAssertion( "hjd") -AnnotationAssertion( "2012-03-08T08:33:20Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of glucocorticoid mediated signaling pathway") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of glucocorticoid mediated signalling") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of glucocorticoid mediated signaling pathway") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of glucocorticoid mediated signalling") -AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of glucocorticoid mediated signaling pathway") -AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of glucocorticoid mediated signalling") -AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of glucocorticoid mediated signalling") -AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of glucocorticoid mediated signaling pathway") -AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of glucocorticoid mediated signalling") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1900170") -AnnotationAssertion(rdfs:label "negative regulation of glucocorticoid mediated signaling pathway") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (positive regulation of glucocorticoid mediated signaling pathway) - -AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that activates or increases the frequency, rate or extent of glucocorticoid mediated signaling pathway.") -AnnotationAssertion( "hjd") -AnnotationAssertion( "2012-03-08T08:33:23Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "positive regulation of glucocorticoid mediated signalling") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of glucocorticoid mediated signaling pathway") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of glucocorticoid mediated signalling") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of glucocorticoid mediated signaling pathway") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of glucocorticoid mediated signalling") -AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of glucocorticoid mediated signaling pathway") -AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of glucocorticoid mediated signalling") -AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of glucocorticoid mediated signaling pathway") -AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of glucocorticoid mediated signalling") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1900171") -AnnotationAssertion(rdfs:label "positive regulation of glucocorticoid mediated signaling pathway") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (regulation of protein localization to nucleus) AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that modulates the frequency, rate or extent of protein localization to nucleus.") @@ -124134,19 +122932,20 @@ AnnotationAssertion( "positive regulation of secondary metabolite biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of cellular alcohol catabolic process) +# Class: (regulation of alcohol catabolic process) -AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that modulates the frequency, rate or extent of cellular alcohol catabolic process.") +AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that modulates the frequency, rate or extent of alcohol catabolic process within a cell.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "krc") AnnotationAssertion( "2012-04-20T10:21:18Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1900419") -AnnotationAssertion(rdfs:label "regulation of cellular alcohol catabolic process") +AnnotationAssertion(rdfs:label "regulation of alcohol catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (negative regulation of cellular alcohol catabolic process) +# Class: (negative regulation of alcohol catabolic process) -AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that stops, prevents or reduces the frequency, rate or extent of cellular alcohol catabolic process.") +AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that stops, prevents or reduces the frequency, rate or extent of alcohol catabolic process within a cell.") AnnotationAssertion( "krc") AnnotationAssertion( "2012-04-20T10:21:28Z") AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of cellular alcohol catabolic process") @@ -124155,12 +122954,13 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of cellular alcohol catabolic process") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1900420") -AnnotationAssertion(rdfs:label "negative regulation of cellular alcohol catabolic process") +AnnotationAssertion(rdfs:label "negative regulation of alcohol catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (positive regulation of cellular alcohol catabolic process) +# Class: (positive regulation of alcohol catabolic process) -AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that activates or increases the frequency, rate or extent of cellular alcohol catabolic process.") +AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that activates or increases the frequency, rate or extent of alcohol catabolic process within a cell.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "krc") AnnotationAssertion( "2012-04-20T10:21:46Z") AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of cellular alcohol catabolic process") @@ -124169,7 +122969,7 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of cellular alcohol catabolic process") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1900421") -AnnotationAssertion(rdfs:label "positive regulation of cellular alcohol catabolic process") +AnnotationAssertion(rdfs:label "positive regulation of alcohol catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (regulation of defense response to bacterium) @@ -130414,32 +129214,6 @@ AnnotationAssertion(rdfs:comment "hu AnnotationAssertion(rdfs:label "positive regulation of glycoprotein metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of RNA polymerase II regulatory region sequence-specific DNA binding) - -AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:dph") Annotation( "GOC:krc") Annotation( "GO_REF:0000059") Annotation( "PMID:20026326") "Any process that modulates the frequency, rate or extent of RNA polymerase II regulatory region sequence-specific DNA binding.") -AnnotationAssertion( "dph") -AnnotationAssertion( "2014-05-15T17:55:54Z") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1903025") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "regulation of RNA polymerase II regulatory region sequence-specific DNA binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding) - -AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:dph") Annotation( "GOC:krc") Annotation( "GO_REF:0000059") Annotation( "PMID:20026326") "Any process that stops, prevents or reduces the frequency, rate or extent of RNA polymerase II regulatory region sequence-specific DNA binding.") -AnnotationAssertion( "dph") -AnnotationAssertion( "2014-05-15T17:56:00Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of RNA polymerase II regulatory region sequence-specific DNA binding") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of RNA polymerase II regulatory region sequence-specific DNA binding") -AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of RNA polymerase II regulatory region sequence-specific DNA binding") -AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of RNA polymerase II regulatory region sequence-specific DNA binding") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1903026") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (regulation of response to wounding) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:kmv") Annotation( "GO_REF:0000058") Annotation( "PMID:19164535") "Any process that modulates the frequency, rate or extent of response to wounding.") @@ -132203,7 +130977,6 @@ AnnotationAssertion(Annotation( "GO:1903561") AnnotationAssertion(rdfs:label "extracellular vesicle") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (regulation of protein localization to cilium) @@ -134413,7 +133186,7 @@ AnnotationAssertion( "regulation of bile acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) # Class: (negative regulation of bile acid metabolic process) @@ -134433,7 +133206,7 @@ AnnotationAssertion( "GO:1904252") AnnotationAssertion(rdfs:label "negative regulation of bile acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -134455,7 +133228,7 @@ AnnotationAssertion( "GO:1904253") AnnotationAssertion(rdfs:label "positive regulation of bile acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -134474,33 +133247,6 @@ AnnotationAssertion(rdfs:label "regu EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (negative regulation of iron ion transmembrane transporter activity) - -AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "GOC:TermGenie") Annotation( "GOC:kom") Annotation( "GO_REF:0000059") Annotation( "PMID:15514116") "Any process that stops, prevents or reduces the frequency, rate or extent of an iron transmembrane transporter activity.") -AnnotationAssertion( "kom") -AnnotationAssertion( "2015-05-20T14:05:06Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of iron cation channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of iron channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of iron-specific channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of iron cation channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of iron channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of iron-specific channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of iron cation channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of iron channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of iron-specific channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of iron cation channel activity") -AnnotationAssertion( "negative regulation of iron channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of iron-specific channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of iron cation channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of iron channel activity") -AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of iron-specific channel activity") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1904255") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "negative regulation of iron ion transmembrane transporter activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (regulation of Schwann cell chemotaxis) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000058") Annotation( "PMID:16203995") "Any process that modulates the frequency, rate or extent of Schwann cell chemotaxis.") @@ -139864,21 +138610,6 @@ AnnotationAssertion( "regulation of protein localization to chromatin") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (positive regulation of RNA polymerase II regulatory region sequence-specific DNA binding) - -AnnotationAssertion(Annotation( "GOC:PARL") Annotation( "GOC:TermGenie") Annotation( "GOC:bc") Annotation( "GO_REF:0000059") Annotation( "PMID:23675531") "Any process that activates or increases the frequency, rate or extent of RNA polymerase II regulatory region sequence-specific DNA binding.") -AnnotationAssertion( "bc") -AnnotationAssertion( "2016-11-03T12:03:07Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of RNA polymerase II regulatory region sequence-specific DNA binding") -AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of RNA polymerase II regulatory region sequence-specific DNA binding") -AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of RNA polymerase II regulatory region sequence-specific DNA binding") -AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of RNA polymerase II regulatory region sequence-specific DNA binding") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1905636") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "positive regulation of RNA polymerase II regulatory region sequence-specific DNA binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (regulation of artery morphogenesis) AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "GOC:BHF_miRNA") Annotation( "GOC:TermGenie") Annotation( "GOC:rph") Annotation( "GO_REF:0000058") Annotation( "PMID:27389411") "Any process that modulates the frequency, rate or extent of artery morphogenesis.") @@ -141443,29 +140174,6 @@ AnnotationAssertion(rdfs:label "prot EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (response to dsDNA) - -AnnotationAssertion(Annotation( "PMID:10051633") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded DNA stimulus.") -AnnotationAssertion( "sl") -AnnotationAssertion( "2015-06-24T17:54:13Z") -AnnotationAssertion( "response to double-stranded DNA") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1990784") -AnnotationAssertion(rdfs:label "response to dsDNA") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (cellular response to dsDNA) - -AnnotationAssertion(Annotation( "PMID:10051633") "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded DNA stimulus.") -AnnotationAssertion( "sl") -AnnotationAssertion( "2015-06-24T22:48:25Z") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1990786") -AnnotationAssertion(rdfs:label "cellular response to dsDNA") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - # Class: (dorsal root ganglion development) AnnotationAssertion(Annotation( "PMID:18583150") "The process whose specific outcome is the progression of a dorsal root ganglion over time, from its formation to the mature structure.") @@ -141478,18 +140186,6 @@ AnnotationAssertion(rdfs:label "dors EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (sequence-specific double-stranded DNA binding) - -AnnotationAssertion(Annotation( "GOC:dos") Annotation( "GOC:sl") "Binding to double-stranded DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA, e.g. promotor binding or rDNA binding.") -AnnotationAssertion( "sl") -AnnotationAssertion( "2015-08-25T17:30:06Z") -AnnotationAssertion( "sequence-specific dsDNA binding") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:1990837") -AnnotationAssertion(rdfs:label "sequence-specific double-stranded DNA binding") -SubClassOf( ) -SubClassOf( ) - # Class: (adaptive thermogenesis) AnnotationAssertion(Annotation( "PMID:17260010") Annotation( "PMID:20363363") "The regulated production of heat in response to short term environmental changes, such as stress, diet or reduced temperature.") @@ -142354,7 +141050,6 @@ AnnotationAssertion( "negative regulation of glutamate metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) # Class: (positive regulation of glutamate metabolic process) @@ -142369,7 +141064,6 @@ AnnotationAssertion( "positive regulation of glutamate metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) # Class: (regulation of testosterone biosynthetic process) @@ -142630,19 +141324,20 @@ AnnotationAssertion( "negative regulation of DNA biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of cellular amino acid biosynthetic process) +# Class: (regulation of amino acid biosynthetic process) AnnotationAssertion(Annotation( "GOC:obol") "Any process that modulates the frequency, rate or extent of cellular amino acid biosynthetic process.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/28908"^^xsd:anyURI) AnnotationAssertion( "vw") AnnotationAssertion( "2010-12-10T11:54:19Z") -AnnotationAssertion(Annotation( "GOC:obol") "regulation of amino acid biosynthetic process") AnnotationAssertion(Annotation( "GOC:obol") "regulation of cellular amino acid anabolism") AnnotationAssertion(Annotation( "GOC:obol") "regulation of cellular amino acid biosynthesis") +AnnotationAssertion(Annotation( "GOC:obol") "regulation of cellular amino acid biosynthetic process") AnnotationAssertion(Annotation( "GOC:obol") "regulation of cellular amino acid formation") AnnotationAssertion(Annotation( "GOC:obol") "regulation of cellular amino acid synthesis") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:2000282") -AnnotationAssertion(rdfs:label "regulation of cellular amino acid biosynthetic process") +AnnotationAssertion(rdfs:label "regulation of amino acid biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (negative regulation of amino acid biosynthetic process) @@ -142813,39 +141508,6 @@ AnnotationAssertion( "positive regulation of ceramide biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of glucocorticoid receptor signaling pathway) - -AnnotationAssertion(Annotation( "GOC:BHF") "Any process that modulates the frequency, rate or extent of glucocorticoid receptor signaling pathway.") -AnnotationAssertion( "vk") -AnnotationAssertion( "2011-01-18T04:38:10Z") -AnnotationAssertion(Annotation( "GOC:obol") "regulation of glucocorticoid receptor signalling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:2000322") -AnnotationAssertion(rdfs:label "regulation of glucocorticoid receptor signaling pathway") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (negative regulation of glucocorticoid receptor signaling pathway) - -AnnotationAssertion(Annotation( "GOC:BHF") "Any process that stops, prevents or reduces the frequency, rate or extent of glucocorticoid receptor signaling pathway.") -AnnotationAssertion( "vk") -AnnotationAssertion( "2011-01-18T04:38:43Z") -AnnotationAssertion(Annotation( "GOC:obol") "negative regulation of glucocorticoid receptor signalling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:2000323") -AnnotationAssertion(rdfs:label "negative regulation of glucocorticoid receptor signaling pathway") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (positive regulation of glucocorticoid receptor signaling pathway) - -AnnotationAssertion(Annotation( "GOC:BHF") "Any process that activates or increases the frequency, rate or extent of glucocorticoid receptor signaling pathway.") -AnnotationAssertion( "vk") -AnnotationAssertion( "2011-01-18T04:39:05Z") -AnnotationAssertion(Annotation( "GOC:obol") "positive regulation of glucocorticoid receptor signalling pathway") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:2000324") -AnnotationAssertion(rdfs:label "positive regulation of glucocorticoid receptor signaling pathway") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (regulation of endothelial cell apoptotic process) AnnotationAssertion(Annotation( "GOC:mah") Annotation( "GOC:mtg_apoptosis") "Any process that modulates the frequency, rate or extent of endothelial cell apoptotic process.") @@ -143594,7 +142256,7 @@ AnnotationAssertion( "GO:2000609") AnnotationAssertion(rdfs:label "regulation of thyroid hormone generation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) # Class: (negative regulation of thyroid hormone generation) @@ -143606,7 +142268,7 @@ AnnotationAssertion( "GO:2000610") AnnotationAssertion(rdfs:label "negative regulation of thyroid hormone generation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -143619,7 +142281,7 @@ AnnotationAssertion( "GO:2000611") AnnotationAssertion(rdfs:label "positive regulation of thyroid hormone generation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -143843,39 +142505,6 @@ AnnotationAssertion( "positive regulation of type B pancreatic cell apoptotic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of transcription regulatory region DNA binding) - -AnnotationAssertion(Annotation( "GOC:obol") "Any process that modulates the frequency, rate or extent of transcription regulatory region DNA binding.") -AnnotationAssertion( "yaf") -AnnotationAssertion( "2011-05-09T03:28:11Z") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:2000677") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "regulation of transcription regulatory region DNA binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (negative regulation of transcription regulatory region DNA binding) - -AnnotationAssertion(Annotation( "GOC:obol") "Any process that stops, prevents or reduces the frequency, rate or extent of transcription regulatory region DNA binding.") -AnnotationAssertion( "yaf") -AnnotationAssertion( "2011-05-09T03:28:14Z") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:2000678") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "negative regulation of transcription regulatory region DNA binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (positive regulation of transcription regulatory region DNA binding) - -AnnotationAssertion(Annotation( "GOC:obol") "Any process that activates or increases the frequency, rate or extent of transcription regulatory region DNA binding.") -AnnotationAssertion( "yaf") -AnnotationAssertion( "2011-05-09T03:28:17Z") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:2000679") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "positive regulation of transcription regulatory region DNA binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (regulation of cardiac muscle cell myoblast differentiation) AnnotationAssertion(Annotation( "GOC:obol") "Any process that modulates the frequency, rate or extent of cardiac muscle cell myoblast differentiation.") @@ -144160,18 +142789,6 @@ AnnotationAssertion(rdfs:label "regu EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (positive regulation of androgen receptor activity) - -AnnotationAssertion(Annotation( "GOC:obol") "Any process that activates or increases the frequency, rate or extent of androgen receptor activity.") -AnnotationAssertion( "yaf") -AnnotationAssertion( "2011-07-15T10:56:14Z") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:2000825") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "positive regulation of androgen receptor activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (regulation of heart morphogenesis) AnnotationAssertion(Annotation( "GOC:BHF") "Any process that modulates the frequency, rate or extent of heart morphogenesis.") @@ -145288,7 +143905,6 @@ SubClassOf( (information content entity) AnnotationAssertion(rdfs:label "information content entity"@en) -SubClassOf( ) # Class: (curation status specification) @@ -154558,6 +153174,16 @@ AnnotationAssertion(rdfs:comment " AnnotationAssertion(rdfs:label "receptor-type tyrosine-protein phosphatase C isoform CD45R") SubClassOf( ) +# Class: (obsolete protein-containing material entity) + +AnnotationAssertion(Annotation( "PRO:DAN") "OBSOLETE. A material entity that minimally consists of a protein.") +AnnotationAssertion( "PR:000064867") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000050567") +AnnotationAssertion(rdfs:comment "Note: Made obsolete since the term definition was much broader than intended. Originally meant to include only single proteins (and derivatives thereof; PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050566), it instead also included cells defined as having certain protein attachments.") +AnnotationAssertion(rdfs:label "obsolete protein-containing material entity") +AnnotationAssertion(owl:deprecated "true"^^xsd:boolean) + # Class: (protein-containing molecular entity) AnnotationAssertion(Annotation( "PRO:DAN") "A molecular entity that minimally consists of a protein.") diff --git a/src/ontology/reports/uberon-edit.obo-obo-report.tsv b/src/ontology/reports/uberon-edit.obo-obo-report.tsv index e5920edef8..abc0637d3a 100644 --- a/src/ontology/reports/uberon-edit.obo-obo-report.tsv +++ b/src/ontology/reports/uberon-edit.obo-obo-report.tsv @@ -1327,7 +1327,7 @@ WARN duplicate_scoped_synonym UBERON:0004717 oboInOwl:hasBroadSynonym B09-29 WARN duplicate_scoped_synonym UBERON:0004717 oboInOwl:hasExactSynonym B09-29 WARN duplicate_scoped_synonym UBERON:0004718 oboInOwl:hasBroadSynonym B09-26 WARN duplicate_scoped_synonym UBERON:0004718 oboInOwl:hasExactSynonym B09-26 -WARN duplicate_scoped_synonym UBERON:0004726 oboInOwl:hasExactSynonym arteriolae rectae renis +WARN duplicate_scoped_synonym UBERON:0004726 oboInOwl:hasNarrowSynonym arteriolae rectae renis WARN duplicate_scoped_synonym UBERON:0004726 oboInOwl:hasRelatedSynonym arteriolae rectae renis WARN duplicate_scoped_synonym UBERON:0004918 oboInOwl:hasExactSynonym musculus sphincter urethrae internus WARN duplicate_scoped_synonym UBERON:0004918 oboInOwl:hasRelatedSynonym musculus sphincter urethrae internus @@ -1954,7 +1954,6 @@ WARN missing_definition IAO:0000115 IAO:0000115 WARN missing_definition IAO:0000116 IAO:0000115 WARN missing_definition IAO:0000232 IAO:0000115 WARN missing_definition IAO:0000233 IAO:0000115 -WARN missing_definition IAO:0000425 IAO:0000115 WARN missing_definition IAO:0000700 IAO:0000115 WARN missing_definition IAO:0006012 IAO:0000115 WARN missing_definition IAO:0100001 IAO:0000115 @@ -1978,9 +1977,13 @@ WARN missing_definition RO:0002134 IAO:0000115 WARN missing_definition RO:0002150 IAO:0000115 WARN missing_definition RO:0002158 IAO:0000115 WARN missing_definition RO:0002159 IAO:0000115 +WARN missing_definition RO:0002161 IAO:0000115 WARN missing_definition RO:0002162 IAO:0000115 WARN missing_definition RO:0002170 IAO:0000115 WARN missing_definition RO:0002171 IAO:0000115 +WARN missing_definition RO:0002173 IAO:0000115 +WARN missing_definition RO:0002174 IAO:0000115 +WARN missing_definition RO:0002175 IAO:0000115 WARN missing_definition RO:0002176 IAO:0000115 WARN missing_definition RO:0002177 IAO:0000115 WARN missing_definition RO:0002178 IAO:0000115 @@ -2019,9 +2022,11 @@ WARN missing_definition RO:0002385 IAO:0000115 WARN missing_definition RO:0002387 IAO:0000115 WARN missing_definition RO:0002433 IAO:0000115 WARN missing_definition RO:0002473 IAO:0000115 +WARN missing_definition RO:0002475 IAO:0000115 WARN missing_definition RO:0002488 IAO:0000115 WARN missing_definition RO:0002489 IAO:0000115 WARN missing_definition RO:0002491 IAO:0000115 +WARN missing_definition RO:0002492 IAO:0000115 WARN missing_definition RO:0002493 IAO:0000115 WARN missing_definition RO:0002494 IAO:0000115 WARN missing_definition RO:0002495 IAO:0000115 @@ -7645,6 +7650,7 @@ INFO missing_superclass UBERON:8410080 rdfs:subClassOf INFO missing_superclass UBERON:8420000 rdfs:subClassOf INFO missing_superclass UBERON:8440011 rdfs:subClassOf INFO missing_superclass UBERON:8450002 rdfs:subClassOf +INFO missing_superclass UBERON:8450003 rdfs:subClassOf INFO missing_superclass UBERON:8470000 rdfs:subClassOf INFO missing_superclass UBERON:8480000 rdfs:subClassOf INFO missing_superclass UBERON:8480001 rdfs:subClassOf diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 11183f1d08..8df503db41 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -224682,6 +224682,20 @@ relationship: dc-contributor https://orcid.org/0000-0002-4341-3265 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X ! Sanjay Jain property_value: dcterms-date "2024-08-28T16:10:50Z" xsd:dateTime +[Term] +id: UBERON:8600117 +name: antimesosalpinx +def: "A posterior free border of a mesosalpinx." [https://vanat.ahc.umn.edu/ungDissect/Lab17/Lab17.html] +synonym: "anti-mesosalpinx" EXACT [doi:10.1101/2020.08.23.263772] +synonym: "posterior free border of mesosalpinx" EXACT [https://vanat.ahc.umn.edu/ungDissect/Lab17/Lab17.html] +synonym: "posterior free edge of mesosalpinx" EXACT [https://orcid.org/0000-0001-7655-4833] +is_a: UBERON:0000042 ! serous membrane +is_a: UBERON:0002095 ! mesentery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-Barbé +relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 ! Ellen Quardokus +relationship: part_of UBERON:0012331 ! mesosalpinx +property_value: dcterms-date "2024-11-14T09:59:53Z" xsd:dateTime + [Term] id: UBERON:8700000 name: aorta-gonad-mesonephros diff --git a/src/ontology/uberon.Makefile b/src/ontology/uberon.Makefile index 8383a740c9..96c3fb83f4 100644 --- a/src/ontology/uberon.Makefile +++ b/src/ontology/uberon.Makefile @@ -1249,8 +1249,8 @@ EXTERNAL_SSSOM_PROVIDERS = fbbt cl biomappings # All the sets coming from the above ontologies. EXTERNAL_SSSOM_SETS = $(foreach provider, $(EXTERNAL_SSSOM_PROVIDERS), $(MAPPINGDIR)/$(provider).sssom.tsv) -# We only refresh external resources under IMP=true -ifeq ($(strip $(IMP)),true) +# We only refresh external resources under MIR=true +ifeq ($(strip $(MIR)),true) # FBbt mapping set. We filter it to only keep UBERON-related mappings # (CL-related mappings are already bundled with the CL set). @@ -1296,7 +1296,7 @@ endif ifeq ($(BRI),true) # Those bridges are generated separately (see below). -CUSTOM_BRIDGES = $(BRIDGEDIR)/uberon-bridge-to-mba.owl \ +EXTERN_BRIDGES = $(BRIDGEDIR)/uberon-bridge-to-mba.owl \ $(BRIDGEDIR)/uberon-bridge-to-dmba.owl # 1. Prepare the ruleset file. @@ -1312,7 +1312,7 @@ $(TMPDIR)/bridges.rules: $(SCRIPTSDIR)/sssomt.m4 $(BRIDGEDIR)/bridges.rules.m4 $(TMPDIR)/bridges: $(SRC) $(IMPORTDIR)/local-cl.owl \ $(MAPPINGDIR)/uberon.sssom.tsv $(MAPPINGDIR)/cl.sssom.tsv \ $(TMPDIR)/bridges.rules $(BRIDGEDIR)/bridges.dispatch \ - $(CUSTOM_BRIDGES) | all_robot_plugins + $(EXTERN_BRIDGES) | all_robot_plugins $(ROBOT) merge -i $(SRC) -i $(IMPORTDIR)/local-cl.owl \ sssom:inject --sssom $(MAPPINGDIR)/uberon.sssom.tsv \ --sssom $(MAPPINGDIR)/cl.sssom.tsv \ @@ -1342,8 +1342,8 @@ UBERON_BRIDGE_MBA = "https://raw.githubusercontent.com/brain-bican/mouse_brain_a UBERON_BRIDGE_DMBA = "https://raw.githubusercontent.com/brain-bican/developing_mouse_brain_atlas_ontology/main/src/ontology/new-bridges/new-uberon-bridge-to-dmba.owl" # Only refresh those bridges when we explicitly allow refreshing -# external resources (IMP=true). -ifeq ($(strip $(IMP)),true) +# external resources (MIR=true). +ifeq ($(strip $(MIR)),true) $(BRIDGEDIR)/uberon-bridge-to-mba.owl: $(SRC) $(ROBOT) annotate -I $(UBERON_BRIDGE_MBA) --ontology-iri $(ONTBASE)/$@ -o $@ @@ -1408,7 +1408,7 @@ DEPLOY_GH=true .PHONY: uberon uberon: - $(MAKE) prepare_release IMP=false PAT=false BRI=true CLEANFILES=tmp/merged-uberon-edit.obo + $(MAKE) prepare_release MIR=false IMP=false PAT=false BRI=true CLEANFILES=tmp/merged-uberon-edit.obo $(MAKE) release-diff if [ $(DEPLOY_GH) = true ]; then $(MAKE) deploy_release GHVERSION="v$(TODAY)"; fi @@ -1489,15 +1489,15 @@ clean: clean_uberon .PHONY: refresh-mappings refresh-mappings: - $(MAKE) MIR=true IMP=true $(EXTERNAL_SSSOM_SETS) + $(MAKE) MIR=true $(EXTERNAL_SSSOM_SETS) .PHONY: refresh-bridges refresh-bridges: - $(MAKE) MIR=true IMP=true BRI=true tmp/bridges + $(MAKE) MIR=true BRI=true tmp/bridges .PHONY: refresh-external-resources refresh-external-resources: - $(MAKE) MIR=true IMP=true BRI=true PAT=false IMP_LARGE=true all_imports all_local_imports tmp/bridges + $(MAKE) MIR=true IMP=true BRI=true PAT=false IMP_LARGE=true all_imports all_local_imports $(EXTERNAL_SSSOM_SETS) $(EXTERN_BRIDGES) # ---------------------------------------- diff --git a/src/scripts/sssomt.m4 b/src/scripts/sssomt.m4 index 2a9851a6ea..d43eb3b140 100644 --- a/src/scripts/sssomt.m4 +++ b/src/scripts/sssomt.m4 @@ -9,7 +9,7 @@ ifelse($2, , `dnl predicate==skos:exactMatch -> create_axiom("%subject_id EquivalentTo: %object_id"); predicate==skos:broadMatch -> create_axiom("%subject_id SubClassOf: %object_id"); predicate==skos:narrowMatch -> create_axiom("%object_id SubClassOf: %subject_id");',`dnl - predicate==semapv:crossSpeciesExactMatch -> create_axiom("%subject_id EquivalentTo: %object_id and (<%TAXREL> some $2)");')') + predicate==semapv:crossSpeciesExactMatch -> create_axiom("%subject_id EquivalentTo: %object_id and (%TAXREL some $2)");')') dnl Expand to instructions to create all possible bridging axioms dnl both for Uberon and for CL diff --git a/subsets/life-stages-composite.obo b/subsets/life-stages-composite.obo index 06e9b3e35f..1b08b2c313 100755 --- a/subsets/life-stages-composite.obo +++ b/subsets/life-stages-composite.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: uberon/releases/2024-09-03/subsets/life-stages-composite.owl +data-version: uberon/releases/2024-11-25/subsets/life-stages-composite.owl subsetdef: 1_STAR "" subsetdef: 2_STAR "" subsetdef: 3_STAR "" @@ -36,6 +36,7 @@ subsetdef: FT_new "" subsetdef: functional_classification "functional_classification" subsetdef: general_cell_types_upper_slim "" subsetdef: gocheck_do_not_annotate "" +subsetdef: gocheck_obsoletion_candidate "" subsetdef: goslim_agr "" subsetdef: goslim_candida "" subsetdef: goslim_chembl "" @@ -133,7 +134,7 @@ idspace: swrl http://www.w3.org/2003/11/swrl# idspace: swrlb http://www.w3.org/2003/11/swrlb# idspace: terms http://purl.org/dc/terms/ ontology: uberon/subsets/life-stages-composite -property_value: owl:versionInfo "2024-09-03" xsd:string +property_value: owl:versionInfo "2024-11-25" xsd:string [Term] id: BFO:0000001 @@ -187,6 +188,22 @@ property_value: example_of_usage "the flight of a bird" xsd:string property_value: example_of_usage "the life of an organism" xsd:string property_value: example_of_usage "your process of aging." xsd:string +[Term] +id: BFO:0000020 +name: specifically dependent continuant +is_a: BFO:0000002 ! continuant +property_value: example_of_usage "of one-sided specifically dependent continuants: the mass of this tomato" xsd:string +property_value: example_of_usage "of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates." xsd:string +property_value: example_of_usage "Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key" xsd:string +property_value: example_of_usage "the disposition of this fish to decay" xsd:string +property_value: example_of_usage "the function of this heart: to pump blood" xsd:string +property_value: example_of_usage "the mutual dependence of proton donors and acceptors in chemical reactions [79" xsd:string +property_value: example_of_usage "the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction" xsd:string +property_value: example_of_usage "the pink color of a medium rare piece of grilled filet mignon at its center" xsd:string +property_value: example_of_usage "the role of being a doctor" xsd:string +property_value: example_of_usage "the shape of this hole." xsd:string +property_value: example_of_usage "the smell of this portion of mozzarella" xsd:string + [Term] id: BFO:0000040 name: material entity @@ -1397,7 +1414,6 @@ synonym: "NH3" RELATED [UniProt] synonym: "NH3" RELATED [IUPAC] synonym: "R-717" RELATED [ChEBI] synonym: "spirit of hartshorn" RELATED [ChemIDplus] -xref: Beilstein:3587154 {source="Beilstein"} xref: CAS:7664-41-7 {source="ChemIDplus"} xref: CAS:7664-41-7 {source="NIST Chemistry WebBook"} xref: CAS:7664-41-7 {source="KEGG COMPOUND"} @@ -1451,12 +1467,12 @@ is_a: BFO:0000004 ! independent continuant is_a: CHEBI:138675 ! gas molecular entity is_a: CHEBI:35107 ! azane is_a: CHEBI:37176 ! mononuclear parent hydride -relationship: has_role CHEBI:228364 ! NMR chemical shift reference compound -relationship: has_role CHEBI:50910 ! neurotoxin -relationship: has_role CHEBI:59740 ! nucleophilic reagent -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:77941 ! EC 3.5.1.4 (amidase) inhibitor -relationship: has_role CHEBI:78433 ! refrigerant +relationship: RO:0000087 CHEBI:228364 ! has role NMR chemical shift reference compound +relationship: RO:0000087 CHEBI:50910 ! has role neurotoxin +relationship: RO:0000087 CHEBI:59740 ! has role nucleophilic reagent +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:77941 ! has role EC 3.5.1.4 (amidase) inhibitor +relationship: RO:0000087 CHEBI:78433 ! has role refrigerant [Term] id: CHEBI:16541 @@ -1569,7 +1585,7 @@ is_a: CHEBI:51086 ! chemical role id: CHEBI:228364 name: NMR chemical shift reference compound namespace: chebi_ontology -def: "Any compound that produces a peak used to reference an NMR spectrum during data pre-processing." [] +def: "Any compound that produces a peak used as reference frequency in the delta chemical shift scale." [] subset: 3_STAR synonym: "NMR chemical shift reference compounds" RELATED [ChEBI] synonym: "NMR chemical shift standard" RELATED [ChEBI] @@ -1718,7 +1734,7 @@ synonym: "oxy-acids" RELATED [ChEBI] synonym: "oxyacids" RELATED [ChEBI] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:24651 ! hydroxides -relationship: has_role CHEBI:39141 ! Bronsted acid +relationship: RO:0000087 CHEBI:39141 ! has role Bronsted acid [Term] id: CHEBI:24834 @@ -1808,7 +1824,7 @@ xref: WebElements:N is_a: BFO:0000004 ! independent continuant is_a: CHEBI:25585 ! nonmetal atom is_a: CHEBI:33300 ! pnictogen -relationship: has_role CHEBI:33937 ! macronutrient +relationship: RO:0000087 CHEBI:33937 ! has role macronutrient [Term] id: CHEBI:25585 @@ -1883,7 +1899,7 @@ xref: WebElements:O is_a: BFO:0000004 ! independent continuant is_a: CHEBI:25585 ! nonmetal atom is_a: CHEBI:33303 ! chalcogen -relationship: has_role CHEBI:33937 ! macronutrient +relationship: RO:0000087 CHEBI:33937 ! has role macronutrient [Term] id: CHEBI:25806 @@ -1944,7 +1960,7 @@ xref: WebElements:C is_a: BFO:0000004 ! independent continuant is_a: CHEBI:25585 ! nonmetal atom is_a: CHEBI:33306 ! carbon group element atom -relationship: has_role CHEBI:33937 ! macronutrient +relationship: RO:0000087 CHEBI:33937 ! has role macronutrient [Term] id: CHEBI:28616 @@ -1974,7 +1990,7 @@ xref: Wikipedia:Carbamic_acid is_a: CHEBI:35352 ! organonitrogen compound is_a: CHEBI:35605 ! carbon oxoacid is_a: CHEBI:64708 ! one-carbon compound -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite [Term] id: CHEBI:28938 @@ -2026,10 +2042,10 @@ is_a: BFO:0000004 ! independent continuant is_a: CHEBI:35106 ! nitrogen hydride is_a: CHEBI:50313 ! onium cation is_a: CHEBI:60242 ! monovalent inorganic cation -relationship: has_role CHEBI:23357 ! cofactor -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite -relationship: has_role CHEBI:77746 ! human metabolite +relationship: RO:0000087 CHEBI:23357 ! has role cofactor +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:29067 @@ -2345,8 +2361,8 @@ name: alpha-amino-acid anion namespace: chebi_ontology def: "An amino-acid anion obtained by deprotonation of any alpha-amino acid." [] subset: 3_STAR +synonym: "alpha-amino acid anion" RELATED [ChEBI] synonym: "alpha-amino acid anions" RELATED [ChEBI] -synonym: "alpha-amino-acid anion" EXACT [ChEBI] synonym: "alpha-amino-acid anions" RELATED [ChEBI] is_a: CHEBI:37022 ! amino-acid anion @@ -2585,7 +2601,7 @@ name: amino-acid cation namespace: chebi_ontology subset: 3_STAR synonym: "amino acid cation" RELATED [ChEBI] -synonym: "amino-acid cation" EXACT [ChEBI] +synonym: "amino acid cations" RELATED [ChEBI] synonym: "amino-acid cations" RELATED [ChEBI] is_a: CHEBI:25697 ! organic cation is_a: CHEBI:33702 ! polyatomic cation @@ -2617,6 +2633,7 @@ namespace: chebi_ontology def: "When two or more amino acids combine to form a peptide, the elements of water are removed, and what remains of each amino acid is called an amino-acid residue." [] subset: 3_STAR synonym: "amino acid residue" RELATED [ChEBI] +synonym: "amino acid residues" RELATED [ChEBI] synonym: "amino-acid residue" EXACT IUPAC_NAME [IUPAC] synonym: "amino-acid residues" RELATED [JCBN] is_a: CHEBI:33247 ! organic group @@ -2652,8 +2669,8 @@ id: CHEBI:33719 name: alpha-amino-acid cation namespace: chebi_ontology subset: 3_STAR +synonym: "alpha-amino acid cation" RELATED [ChEBI] synonym: "alpha-amino acid cations" RELATED [ChEBI] -synonym: "alpha-amino-acid cation" EXACT [ChEBI] synonym: "alpha-amino-acid cations" RELATED [ChEBI] is_a: CHEBI:33703 ! amino-acid cation @@ -2769,11 +2786,13 @@ is_a: CHEBI:24432 ! biological role [Term] id: CHEBI:35238 -name: amino acid zwitterion +name: amino-acid zwitterion namespace: chebi_ontology def: "The zwitterionic form of an amino acid having a negatively charged carboxyl group and a positively charged amino group." [] subset: 3_STAR -synonym: "amino acid zwitterion" EXACT [ChEBI] +synonym: "amino acid zwitterion" RELATED [ChEBI] +synonym: "amino acid zwitterions" RELATED [ChEBI] +synonym: "amino-acid zwitterions" RELATED [ChEBI] is_a: CHEBI:27369 ! zwitterion [Term] @@ -3005,8 +3024,8 @@ id: CHEBI:37022 name: amino-acid anion namespace: chebi_ontology subset: 3_STAR +synonym: "amino acid anion" RELATED [ChEBI] synonym: "amino acid anions" RELATED [ChEBI] -synonym: "amino-acid anion" EXACT [ChEBI] synonym: "amino-acid anions" RELATED [ChEBI] is_a: CHEBI:29067 ! carboxylic acid anion is_a: CHEBI:35352 ! organonitrogen compound @@ -3195,7 +3214,7 @@ is_a: BFO:0000004 ! independent continuant is_a: CHEBI:24835 ! inorganic molecular entity is_a: CHEBI:25585 ! nonmetal atom is_a: CHEBI:33559 ! s-block element atom -relationship: has_role CHEBI:33937 ! macronutrient +relationship: RO:0000087 CHEBI:33937 ! has role macronutrient [Term] id: CHEBI:50047 @@ -3206,7 +3225,7 @@ subset: 3_STAR synonym: "organic amino compounds" RELATED [ChEBI] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:35352 ! organonitrogen compound -relationship: has_role CHEBI:39142 ! Bronsted base +relationship: RO:0000087 CHEBI:39142 ! has role Bronsted base [Term] id: CHEBI:50297 @@ -3514,7 +3533,6 @@ synonym: "amino-acid anion residue" RELATED [ChEBI] synonym: "amino-acid anion residues" RELATED [ChEBI] synonym: "anionic amino acid residue" RELATED [ChEBI] synonym: "anionic amino acid residues" RELATED [ChEBI] -synonym: "anionic amino-acid residues" RELATED [ChEBI] is_a: CHEBI:64775 ! organic anionic group [Term] @@ -3761,14 +3779,17 @@ is_a: CHEBI:33232 ! application [Term] id: CHEBI:78608 -name: alpha-amino acid zwitterion +name: alpha-amino-acid zwitterion namespace: chebi_ontology alt_id: CHEBI:83409 -def: "An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of any alpha-amino acid; major species at pH 7.3." [] +def: "An amino acid-zwitterion obtained by transfer of a proton from the carboxy to the amino group of any alpha-amino acid; major species at pH 7.3." [] subset: 3_STAR +synonym: "alpha-amino acid zwitterion" RELATED [ChEBI] +synonym: "alpha-amino acid zwitterions" RELATED [ChEBI] +synonym: "alpha-amino-acid zwitterions" RELATED [ChEBI] synonym: "an alpha-amino acid" RELATED [UniProt] xref: MetaCyc:Alpha-Amino-Acids {source="SUBMITTER"} -is_a: CHEBI:35238 ! amino acid zwitterion +is_a: CHEBI:35238 ! amino-acid zwitterion [Term] id: CHEBI:79388 @@ -3806,7 +3827,7 @@ xref: WBbt:0004017 xref: XAO:0003012 xref: ZFA:0009000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: UBERON:0000061 ! anatomical structure -relationship: only_in_taxon NCBITaxon:131567 ! cellular organisms +relationship: in_taxon NCBITaxon:131567 ! cellular organisms [Term] id: CL:0000007 @@ -3827,6 +3848,7 @@ synonym: "animal stem cell" EXACT [] xref: CALOHA:TS-2086 xref: FMA:63368 xref: ZFA:0005957 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0011115 ! precursor cell intersection_of: CL:0000000 ! cell intersection_of: capable_of GO:0017145 ! stem cell division @@ -3882,7 +3904,7 @@ xref: FBbt:00000124 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ xref: FMA:66768 xref: WBbt:0003672 xref: ZFA:0009034 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell relationship: part_of UBERON:0000483 ! epithelium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "https://www.swissbiopics.org/api/image/Epithelial_cells.svg" xsd:anyURI @@ -3928,6 +3950,7 @@ xref: FMA:67328 xref: WBbt:0003675 xref: ZFA:0009114 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000183 ! contractile cell +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0000393 ! electrically responsive cell is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from CL:0000056 ! myoblast @@ -3947,6 +3970,7 @@ def: "A cell of the outer of the three germ layers of the embryo." [MESH:D004475 synonym: "ectoderm cell" EXACT [] xref: FMA:72549 xref: ZFA:0009137 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0002321 ! embryonic cell (metazoa) relationship: part_of UBERON:0000924 ! ectoderm @@ -3959,6 +3983,7 @@ synonym: "mesoblast" EXACT [] synonym: "mesoderm cell" EXACT [] xref: FMA:72554 xref: ZFA:0009138 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0002321 ! embryonic cell (metazoa) relationship: part_of UBERON:0000926 ! mesoderm @@ -3969,19 +3994,20 @@ def: "A cell of the inner of the three germ layers of the embryo." [MESH:D004707 synonym: "endoderm cell" EXACT [] xref: FMA:72555 xref: ZFA:0009139 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0002321 ! embryonic cell (metazoa) relationship: part_of UBERON:0000925 ! endoderm [Term] id: CL:0000255 name: eukaryotic cell -def: "Any cell that only exists in Eukaryota." [FBC:Autogenerated] +def: "Any cell that in taxon some Eukaryota." [FBC:Autogenerated] subset: cellxgene_subset xref: MESH:D005057 is_a: CL:0000000 ! cell intersection_of: CL:0000000 ! cell -intersection_of: only_in_taxon NCBITaxon:2759 ! Eukaryota -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota +intersection_of: in_taxon NCBITaxon:2759 ! Eukaryota +relationship: in_taxon NCBITaxon:2759 ! Eukaryota [Term] id: CL:0000352 @@ -4001,8 +4027,8 @@ is_a: CL:0000007 ! early embryonic cell (metazoa) is_a: CL:0000255 ! eukaryotic cell is_a: CL:0010017 ! zygote intersection_of: CL:0010017 ! zygote -intersection_of: only_in_taxon NCBITaxon:33208 ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +intersection_of: in_taxon NCBITaxon:33208 ! Metazoa +relationship: in_taxon NCBITaxon:33208 ! Metazoa [Term] id: CL:0000393 @@ -4048,6 +4074,7 @@ def: "A non-terminally differentiated cell that is capable of developing into a subset: cellxgene_subset xref: ZFA:0009291 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000055 ! non-terminally differentiated cell +is_a: CL:0000255 ! eukaryotic cell is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: CL:0011115 ! precursor cell intersection_of: develops_into CL:0000187 ! muscle cell @@ -4087,7 +4114,7 @@ def: "A cell that is part of the nervous system." [GOC:tfm, ISBN:0618947256] subset: cellxgene_subset xref: CALOHA:TS-2040 xref: FMA:70333 -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000000 ! cell intersection_of: part_of UBERON:0001016 ! nervous system relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 @@ -4220,8 +4247,8 @@ def: "The life of an individual of the species Drosophila melanogaster, from fer synonym: "Drosophila life cycle" EXACT [] is_a: UBERON:0000104 ! life cycle intersection_of: UBERON:0000104 ! life cycle -intersection_of: occurs_in NCBITaxon:7227 ! Drosophila melanogaster -relationship: occurs_in NCBITaxon:7227 ! Drosophila melanogaster +intersection_of: BFO:0000066 NCBITaxon:7227 ! occurs in Drosophila melanogaster +relationship: BFO:0000066 NCBITaxon:7227 ! occurs in Drosophila melanogaster property_value: IAO:0000589 "life cycle (drosophila)" xsd:string [Term] @@ -4234,7 +4261,7 @@ subset: life_stage is_a: FBdv:00007012 ! life stage is_a: UBERON:0000107 ! cleavage stage intersection_of: UBERON:0000107 ! cleavage stage -intersection_of: occurs_in NCBITaxon:7227 ! Drosophila melanogaster +intersection_of: BFO:0000066 NCBITaxon:7227 ! occurs in Drosophila melanogaster relationship: FBdv:00018001 FBdv:00005289 ! substage of embryonic stage relationship: immediately_preceded_by FBdv:00005288 ! fertilized egg stage property_value: IAO:0000589 "cleavage stage (drosophila)" xsd:string @@ -4551,7 +4578,7 @@ subset: life_stage is_a: FBdv:00007012 ! life stage is_a: UBERON:0000106 ! zygote stage intersection_of: UBERON:0000106 ! zygote stage -intersection_of: occurs_in NCBITaxon:7227 ! Drosophila melanogaster +intersection_of: BFO:0000066 NCBITaxon:7227 ! occurs in Drosophila melanogaster relationship: FBdv:00018001 FBdv:00005286 ! substage of egg stage relationship: FBdv:00018001 FBdv:00005289 ! substage of embryonic stage relationship: immediately_preceded_by FBdv:00005287 ! unfertilized egg stage @@ -4567,10 +4594,10 @@ subset: life_stage is_a: FBdv:00007012 ! life stage is_a: UBERON:0000068 ! embryo stage intersection_of: UBERON:0000068 ! embryo stage -intersection_of: occurs_in NCBITaxon:7227 ! Drosophila melanogaster +intersection_of: BFO:0000066 NCBITaxon:7227 ! occurs in Drosophila melanogaster relationship: immediately_preceded_by FBdv:00005287 ! unfertilized egg stage -relationship: immediately_precedes FBdv:00005336 ! larval stage -relationship: immediately_precedes FBdv:00005337 ! first instar larval stage +relationship: RO:0002090 FBdv:00005336 ! immediately precedes larval stage +relationship: RO:0002090 FBdv:00005337 ! immediately precedes first instar larval stage property_value: IAO:0000589 "embryo stage (drosophila)" xsd:string [Term] @@ -4756,7 +4783,7 @@ synonym: "gastrulation stage" EXACT [] is_a: FBdv:00007012 ! life stage is_a: UBERON:0000109 ! gastrula stage intersection_of: UBERON:0000109 ! gastrula stage -intersection_of: occurs_in NCBITaxon:7227 ! Drosophila melanogaster +intersection_of: BFO:0000066 NCBITaxon:7227 ! occurs in Drosophila melanogaster relationship: FBdv:00018001 FBdv:00005289 ! substage of embryonic stage relationship: immediately_preceded_by FBdv:00005304 ! blastoderm stage relationship: immediately_preceded_by FBdv:00005311 ! embryonic stage 5 @@ -4904,7 +4931,7 @@ subset: life_stage is_a: FBdv:00007012 ! life stage is_a: UBERON:0007220 ! late embryonic stage intersection_of: UBERON:0007220 ! late embryonic stage -intersection_of: occurs_in NCBITaxon:7227 ! Drosophila melanogaster +intersection_of: BFO:0000066 NCBITaxon:7227 ! occurs in Drosophila melanogaster relationship: FBdv:00018001 FBdv:00005289 ! substage of embryonic stage relationship: immediately_preceded_by FBdv:00005331 ! dorsal closure stage relationship: immediately_preceded_by FBdv:00005332 ! embryonic stage 15 @@ -4941,12 +4968,12 @@ subset: life_stage is_a: FBdv:00007012 ! life stage is_a: UBERON:0004730 ! instar larval stage intersection_of: UBERON:0004730 ! instar larval stage -intersection_of: occurs_in NCBITaxon:7227 ! Drosophila melanogaster +intersection_of: BFO:0000066 NCBITaxon:7227 ! occurs in Drosophila melanogaster relationship: immediately_preceded_by FBdv:00005289 ! embryonic stage relationship: immediately_preceded_by FBdv:00005335 ! embryonic stage 17 relationship: immediately_preceded_by FBdv:00007018 ! embryonic stage 17(iv) -relationship: immediately_precedes FBdv:00005342 ! prepupal stage -relationship: immediately_precedes FBdv:00007001 ! P-stage +relationship: RO:0002090 FBdv:00005342 ! immediately precedes prepupal stage +relationship: RO:0002090 FBdv:00007001 ! immediately precedes P-stage property_value: IAO:0000589 "instar larval stage (drosophila)" xsd:string [Term] @@ -4965,7 +4992,7 @@ relationship: immediately_preceded_by FBdv:00005289 ! embryonic stage relationship: immediately_preceded_by FBdv:00005333 ! late embryonic stage relationship: immediately_preceded_by FBdv:00005335 ! embryonic stage 17 relationship: immediately_preceded_by FBdv:00007018 ! embryonic stage 17(iv) -relationship: immediately_precedes FBdv:00005338 ! second instar larval stage +relationship: RO:0002090 FBdv:00005338 ! immediately precedes second instar larval stage [Term] id: FBdv:00005338 @@ -4980,7 +5007,7 @@ xref: UBERON:8000001 is_a: FBdv:00007012 ! life stage relationship: FBdv:00018001 FBdv:00005336 ! substage of larval stage relationship: immediately_preceded_by FBdv:00005337 ! first instar larval stage -relationship: immediately_precedes FBdv:00005339 ! third instar larval stage +relationship: RO:0002090 FBdv:00005339 ! immediately precedes third instar larval stage [Term] id: FBdv:00005339 @@ -4995,8 +5022,8 @@ xref: UBERON:8000002 is_a: FBdv:00007012 ! life stage relationship: FBdv:00018001 FBdv:00005336 ! substage of larval stage relationship: immediately_preceded_by FBdv:00005338 ! second instar larval stage -relationship: immediately_precedes FBdv:00005342 ! prepupal stage -relationship: immediately_precedes FBdv:00007001 ! P-stage +relationship: RO:0002090 FBdv:00005342 ! immediately precedes prepupal stage +relationship: RO:0002090 FBdv:00007001 ! immediately precedes P-stage [Term] id: FBdv:00005340 @@ -5037,7 +5064,7 @@ relationship: immediately_preceded_by FBdv:00005336 ! larval stage relationship: immediately_preceded_by FBdv:00005339 ! third instar larval stage relationship: immediately_preceded_by FBdv:00007005 ! third instar larval stage L2 relationship: immediately_preceded_by FBdv:00007007 ! late third instar larval stage -relationship: immediately_precedes FBdv:00005349 ! pupal stage +relationship: RO:0002090 FBdv:00005349 ! immediately precedes pupal stage [Term] id: FBdv:00005343 @@ -5128,10 +5155,10 @@ synonym: "phanerocephalic pupa" EXACT [FlyBase:FBrf0036849] is_a: FBdv:00007012 ! life stage is_a: UBERON:0000070 ! pupal stage intersection_of: UBERON:0000070 ! pupal stage -intersection_of: occurs_in NCBITaxon:7227 ! Drosophila melanogaster +intersection_of: BFO:0000066 NCBITaxon:7227 ! occurs in Drosophila melanogaster relationship: FBdv:00018001 FBdv:00007001 ! substage of P-stage relationship: immediately_preceded_by FBdv:00005342 ! prepupal stage -relationship: immediately_precedes FBdv:00006011 ! pharate adult stage +relationship: RO:0002090 FBdv:00006011 ! immediately precedes pharate adult stage property_value: IAO:0000589 "pupal stage (drosophila)" xsd:string [Term] @@ -5371,7 +5398,7 @@ subset: life_stage is_a: FBdv:00007012 ! life stage is_a: UBERON:0000066 ! fully formed stage intersection_of: UBERON:0000066 ! fully formed stage -intersection_of: occurs_in NCBITaxon:7227 ! Drosophila melanogaster +intersection_of: BFO:0000066 NCBITaxon:7227 ! occurs in Drosophila melanogaster relationship: immediately_preceded_by FBdv:00005366 ! pharate adult stage P15 relationship: immediately_preceded_by FBdv:00005368 ! pharate adult stage P15(ii) relationship: immediately_preceded_by FBdv:00006011 ! pharate adult stage @@ -5391,7 +5418,7 @@ relationship: FBdv:00018001 FBdv:00007025 ! substage of immature adult stage relationship: immediately_preceded_by FBdv:00005368 ! pharate adult stage P15(ii) relationship: immediately_preceded_by FBdv:00006011 ! pharate adult stage relationship: immediately_preceded_by FBdv:00007001 ! P-stage -relationship: immediately_precedes FBdv:00005371 ! adult stage A2 +relationship: RO:0002090 FBdv:00005371 ! immediately precedes adult stage A2 [Term] id: FBdv:00005371 @@ -5404,7 +5431,7 @@ synonym: "adult stage II" RELATED [] is_a: FBdv:00005259 ! developmental stage relationship: FBdv:00018001 FBdv:00007025 ! substage of immature adult stage relationship: immediately_preceded_by FBdv:00005370 ! adult stage A1 -relationship: immediately_precedes FBdv:00006012 ! adult stage A3 +relationship: RO:0002090 FBdv:00006012 ! immediately precedes adult stage A3 [Term] id: FBdv:00006011 @@ -5417,9 +5444,9 @@ is_a: FBdv:00007012 ! life stage relationship: FBdv:00018001 FBdv:00007001 ! substage of P-stage relationship: immediately_preceded_by FBdv:00005349 ! pupal stage relationship: immediately_preceded_by FBdv:00005354 ! pupal stage P7 -relationship: immediately_precedes FBdv:00005369 ! adult stage -relationship: immediately_precedes FBdv:00005370 ! adult stage A1 -relationship: immediately_precedes FBdv:00007025 ! immature adult stage +relationship: RO:0002090 FBdv:00005369 ! immediately precedes adult stage +relationship: RO:0002090 FBdv:00005370 ! immediately precedes adult stage A1 +relationship: RO:0002090 FBdv:00007025 ! immediately precedes immature adult stage [Term] id: FBdv:00006012 @@ -5432,7 +5459,7 @@ synonym: "adult stage III" RELATED [] is_a: FBdv:00005259 ! developmental stage relationship: FBdv:00018001 FBdv:00007025 ! substage of immature adult stage relationship: immediately_preceded_by FBdv:00005371 ! adult stage A2 -relationship: immediately_precedes FBdv:00007026 ! mature adult stage +relationship: RO:0002090 FBdv:00007026 ! immediately precedes mature adult stage [Term] id: FBdv:00007001 @@ -5449,9 +5476,9 @@ relationship: immediately_preceded_by FBdv:00005336 ! larval stage relationship: immediately_preceded_by FBdv:00005339 ! third instar larval stage relationship: immediately_preceded_by FBdv:00007005 ! third instar larval stage L2 relationship: immediately_preceded_by FBdv:00007007 ! late third instar larval stage -relationship: immediately_precedes FBdv:00005369 ! adult stage -relationship: immediately_precedes FBdv:00005370 ! adult stage A1 -relationship: immediately_precedes FBdv:00007025 ! immature adult stage +relationship: RO:0002090 FBdv:00005369 ! immediately precedes adult stage +relationship: RO:0002090 FBdv:00005370 ! immediately precedes adult stage A1 +relationship: RO:0002090 FBdv:00007025 ! immediately precedes immature adult stage property_value: dcterms-date "2008-06-05T04:51:40Z" xsd:string [Term] @@ -5518,10 +5545,10 @@ synonym: "life cycle stage" EXACT [] is_a: FBdv:00005259 ! developmental stage is_a: UBERON:0000105 ! life cycle stage intersection_of: UBERON:0000105 ! life cycle stage -intersection_of: occurs_in NCBITaxon:7227 ! Drosophila melanogaster +intersection_of: BFO:0000066 NCBITaxon:7227 ! occurs in Drosophila melanogaster +relationship: BFO:0000066 NCBITaxon:7227 ! occurs in Drosophila melanogaster relationship: dc-contributor http://orcid.org/0000-0002-7073-9172 relationship: FBdv:00018001 FBdv:00000000 ! substage of Drosophila life -relationship: occurs_in NCBITaxon:7227 ! Drosophila melanogaster property_value: dcterms-date "2009-10-01T05:59:22Z" xsd:string property_value: IAO:0000589 "life cycle stage (drosophila)" xsd:string @@ -5641,7 +5668,7 @@ relationship: dc-contributor http://orcid.org/0000-0002-7073-9172 relationship: FBdv:00018001 FBdv:00007075 ! substage of day 0 of adulthood relationship: immediately_preceded_by FBdv:00006011 ! pharate adult stage relationship: immediately_preceded_by FBdv:00007001 ! P-stage -relationship: immediately_precedes FBdv:00007026 ! mature adult stage +relationship: RO:0002090 FBdv:00007026 ! immediately precedes mature adult stage property_value: dcterms-date "2013-01-08T20:06:59Z" xsd:string [Term] @@ -5697,9 +5724,9 @@ def: "Formation of a complex between aminoacylated initiator methionine tRNA, GT synonym: "translation initiation ternary complex assembly" EXACT [] is_a: GO:0022618 ! protein-RNA complex assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0044207 ! translation initiation ternary complex +intersection_of: RO:0002588 GO:0044207 ! results in assembly of translation initiation ternary complex relationship: part_of GO:0006413 ! translational initiation -relationship: results_in_assembly_of GO:0044207 ! translation initiation ternary complex +relationship: RO:0002588 GO:0044207 ! results in assembly of translation initiation ternary complex [Term] id: GO:0001704 @@ -5708,9 +5735,9 @@ namespace: biological_process def: "The formation of the ectoderm, mesoderm and endoderm during gastrulation." [GOC:go_curators] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000923 ! germ layer +intersection_of: RO:0002297 UBERON:0000923 ! results in formation of anatomical entity germ layer relationship: part_of GO:0007369 ! gastrulation -relationship: results_in_formation_of_anatomical_entity UBERON:0000923 ! germ layer +relationship: RO:0002297 UBERON:0000923 ! results in formation of anatomical entity germ layer [Term] id: GO:0001705 @@ -5719,9 +5746,9 @@ namespace: biological_process def: "The formation of ectoderm during gastrulation." [GOC:go_curators] is_a: GO:0001704 ! formation of primary germ layer intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000924 ! ectoderm +intersection_of: RO:0002297 UBERON:0000924 ! results in formation of anatomical entity ectoderm relationship: part_of GO:0007398 ! ectoderm development -relationship: results_in_formation_of_anatomical_entity UBERON:0000924 ! ectoderm +relationship: RO:0002297 UBERON:0000924 ! results in formation of anatomical entity ectoderm [Term] id: GO:0001706 @@ -5731,9 +5758,9 @@ def: "The formation of the endoderm during gastrulation." [GOC:go_curators] synonym: "endoblast formation" NARROW [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0001704 ! formation of primary germ layer intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000925 ! endoderm +intersection_of: RO:0002297 UBERON:0000925 ! results in formation of anatomical entity endoderm relationship: part_of GO:0007492 ! endoderm development -relationship: results_in_formation_of_anatomical_entity UBERON:0000925 ! endoderm +relationship: RO:0002297 UBERON:0000925 ! results in formation of anatomical entity endoderm [Term] id: GO:0001707 @@ -5742,9 +5769,9 @@ namespace: biological_process def: "The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts." [GOC:go_curators] is_a: GO:0001704 ! formation of primary germ layer intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000926 ! mesoderm +intersection_of: RO:0002297 UBERON:0000926 ! results in formation of anatomical entity mesoderm relationship: part_of GO:0048332 ! mesoderm morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0000926 ! mesoderm +relationship: RO:0002297 UBERON:0000926 ! results in formation of anatomical entity mesoderm [Term] id: GO:0001838 @@ -5765,9 +5792,9 @@ synonym: "neurulation" EXACT [] xref: Wikipedia:Neurulation is_a: GO:0001838 ! embryonic epithelial tube formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001049 ! neural tube +intersection_of: RO:0002297 UBERON:0001049 ! results in formation of anatomical entity neural tube relationship: part_of GO:0021915 ! neural tube development -relationship: results_in_formation_of_anatomical_entity UBERON:0001049 ! neural tube +relationship: RO:0002297 UBERON:0001049 ! results in formation of anatomical entity neural tube [Term] id: GO:0002009 @@ -5777,9 +5804,9 @@ def: "The process in which the anatomical structures of epithelia are generated synonym: "epithelium morphogenesis" EXACT [] is_a: GO:0048729 ! tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000483 ! epithelium +intersection_of: RO:0002298 UBERON:0000483 ! results in morphogenesis of epithelium relationship: part_of GO:0060429 ! epithelium development -relationship: results_in_morphogenesis_of UBERON:0000483 ! epithelium +relationship: RO:0002298 UBERON:0000483 ! results in morphogenesis of epithelium [Term] id: GO:0002117 @@ -5795,10 +5822,10 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the nematode larva over time, from its formation to the mature structure. Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew." [GOC:ems, GOC:kmv] is_a: GO:0002164 ! larval development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0009850 ! nematode larva +intersection_of: RO:0002296 UBERON:0009850 ! results in development of nematode larva relationship: in_taxon NCBITaxon:33213 {all_only="true"} ! Bilateria -relationship: only_in_taxon NCBITaxon:33213 ! Bilateria -relationship: results_in_development_of UBERON:0009850 ! nematode larva +relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria +relationship: RO:0002296 UBERON:0009850 ! results in development of nematode larva [Term] id: GO:0002164 @@ -5816,7 +5843,7 @@ def: "The process whose specific outcome is the progression of the instar larva is_a: GO:0007275 ! multicellular organism development is_a: GO:0009791 ! post-embryonic development relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda [Term] id: GO:0002168 @@ -5872,7 +5899,7 @@ def: "A protein complex consisting of three collagen chains assembled into a lef xref: Wikipedia:Collagen is_a: GO:0032991 ! protein-containing complex relationship: in_taxon NCBITaxon:33208 {all_only="true", source="PMID:12382326"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 {source="PMID:12382326"} ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 {source="PMID:12382326"} ! only in taxon Metazoa [Term] id: GO:0005587 @@ -5912,7 +5939,7 @@ synonym: "nucleocytoplasm" RELATED [GOC:mah] synonym: "protoplasm" EXACT [] synonym: "protoplast" RELATED [GOC:mah] xref: Wikipedia:Intracellular -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of CL:0000000 ! cell property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/17776" xsd:anyURI @@ -5931,7 +5958,7 @@ subset: goslim_prokaryote subset: goslim_prokaryote_ribbon subset: goslim_yeast xref: Wikipedia:Cytoplasm -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of GO:0005622 ! intracellular anatomical structure property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23023" xsd:anyURI @@ -5974,12 +6001,12 @@ xref: Wikipedia:Translation_(genetics) is_a: GO:0009059 ! macromolecule biosynthetic process is_a: GO:0019538 ! protein metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:36080 ! protein intersection_of: part_of GO:0010467 ! gene expression +intersection_of: RO:0004008 CHEBI:36080 ! has primary output protein relationship: ends_with GO:0006415 ! translational termination relationship: has_part GO:0006414 ! translational elongation -relationship: has_primary_output CHEBI:36080 ! protein relationship: part_of GO:0010467 ! gene expression +relationship: RO:0004008 CHEBI:36080 ! has primary output protein relationship: starts_with GO:0006413 ! translational initiation [Term] @@ -5994,7 +6021,7 @@ synonym: "biopolymerisation" BROAD [] synonym: "biopolymerization" BROAD [] synonym: "protein synthesis initiation" BROAD [] synonym: "translation initiation" EXACT [] -is_a: GO:0044237 ! cellular metabolic process +is_a: GO:0008152 ! metabolic process relationship: part_of GO:0006412 ! translation relationship: starts_with GO:0001677 ! formation of translation initiation ternary complex @@ -6059,8 +6086,8 @@ subset: goslim_yeast synonym: "ion transport" BROAD [] is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:24867 ! monoatomic ion -relationship: has_primary_input CHEBI:24867 ! monoatomic ion +intersection_of: RO:0004009 CHEBI:24867 ! has primary input monoatomic ion +relationship: RO:0004009 CHEBI:24867 ! has primary input monoatomic ion [Term] id: GO:0006936 @@ -6070,7 +6097,7 @@ def: "A process in which force is generated within muscle tissue, resulting in a subset: goslim_pir xref: Wikipedia:Muscle_contraction is_a: GO:0003012 ! muscle system process -relationship: occurs_in UBERON:0002385 ! muscle tissue +relationship: BFO:0000066 UBERON:0002385 ! occurs in muscle tissue [Term] id: GO:0007154 @@ -6104,7 +6131,7 @@ synonym: "signal transmission across a synapse" BROAD [] synonym: "synaptic transmission" BROAD [] xref: Wikipedia:Neurotransmission is_a: GO:0098916 ! anterograde trans-synaptic signaling -relationship: has_participant GO:0045202 ! synapse +relationship: RO:0000057 GO:0045202 ! has participant synapse [Term] id: GO:0007275 @@ -6118,8 +6145,8 @@ subset: goslim_plant is_a: GO:0032501 ! multicellular organismal process is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_developmental_progression_of UBERON:0000468 ! multicellular organism -relationship: results_in_developmental_progression_of UBERON:0000468 ! multicellular organism +intersection_of: RO:0002295 UBERON:0000468 ! results in developmental progression of multicellular organism +relationship: RO:0002295 UBERON:0000468 ! results in developmental progression of multicellular organism property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/21234" xsd:anyURI [Term] @@ -6141,8 +6168,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the ectoderm over time, from its formation to the mature structure. In animal embryos, the ectoderm is the outer germ layer of the embryo, formed during gastrulation." [GOC:dph, GOC:tb] is_a: GO:0009888 ! tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000924 ! ectoderm -relationship: results_in_development_of UBERON:0000924 ! ectoderm +intersection_of: RO:0002296 UBERON:0000924 ! results in development of ectoderm +relationship: RO:0002296 UBERON:0000924 ! results in development of ectoderm [Term] id: GO:0007399 @@ -6153,8 +6180,8 @@ subset: goslim_drosophila synonym: "pan-neural process" RELATED [] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001016 ! nervous system -relationship: results_in_development_of UBERON:0001016 ! nervous system +intersection_of: RO:0002296 UBERON:0001016 ! results in development of nervous system +relationship: RO:0002296 UBERON:0001016 ! results in development of nervous system [Term] id: GO:0007492 @@ -6163,8 +6190,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues." [GOC:dph, GOC:tb] is_a: GO:0009888 ! tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000925 ! endoderm -relationship: results_in_development_of UBERON:0000925 ! endoderm +intersection_of: RO:0002296 UBERON:0000925 ! results in development of endoderm +relationship: RO:0002296 UBERON:0000925 ! results in development of endoderm [Term] id: GO:0007498 @@ -6174,8 +6201,8 @@ def: "The process whose specific outcome is the progression of the mesoderm over subset: goslim_drosophila is_a: GO:0009888 ! tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000926 ! mesoderm -relationship: results_in_development_of UBERON:0000926 ! mesoderm +intersection_of: RO:0002296 UBERON:0000926 ! results in development of mesoderm +relationship: RO:0002296 UBERON:0000926 ! results in development of mesoderm [Term] id: GO:0007562 @@ -6204,7 +6231,7 @@ def: "The periodic shedding of part or all of a chitin-based cuticle, which is t synonym: "chitin-based cuticle molting cycle" EXACT [GOC:dph, GOC:tb] is_a: GO:0042303 ! molting cycle relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda [Term] id: GO:0008150 @@ -6238,7 +6265,7 @@ name: metabolic process namespace: biological_process alt_id: GO:0044236 alt_id: GO:0044710 -def: "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation." [GOC:go_curators, ISBN:0198547684] +def: "A cellular process consisting of the biochemical pathways by which a living organism transforms chemical substances. This includes including anabolism (biosynthetic process) and catabolism (catabolic process). Metabolic processes includes the transformation of small molecules, as well macromolecular processes such as DNA repair and replication, protein synthesis and degradation." [GOC:go_curators, ISBN:0198547684] comment: Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions. subset: gocheck_do_not_annotate subset: goslim_chembl @@ -6247,14 +6274,11 @@ subset: goslim_metagenomics subset: goslim_pir subset: goslim_plant subset: goslim_prokaryote_ribbon -synonym: "metabolic process resulting in cell growth" NARROW [] synonym: "metabolism" EXACT [] -synonym: "metabolism resulting in cell growth" NARROW [] -synonym: "multicellular organism metabolic process" NARROW [] -synonym: "single-organism metabolic process" RELATED [] xref: Wikipedia:Metabolism -is_a: GO:0008150 ! biological_process +is_a: GO:0009987 ! cellular process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28932" xsd:anyURI created_by: jl creation_date: 2012-10-17T15:46:40Z @@ -6264,7 +6288,7 @@ name: biosynthetic process namespace: biological_process alt_id: GO:0044274 alt_id: GO:0044711 -def: "The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones." [GOC:curators, ISBN:0198547684] +def: "A cellular process consisting of the biochemical pathways by which a living organism synthesizes chemical substances. This typically represents the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones." [GOC:curators, ISBN:0198547684] subset: goslim_chembl subset: goslim_metagenomics subset: goslim_plant @@ -6277,6 +6301,7 @@ synonym: "single-organism biosynthetic process" RELATED [] synonym: "synthesis" EXACT [] xref: Wikipedia:Anabolism is_a: GO:0008152 ! metabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28932" xsd:anyURI created_by: jl creation_date: 2012-10-17T15:52:18Z @@ -6294,11 +6319,11 @@ synonym: "macromolecule anabolism" EXACT [] synonym: "macromolecule biosynthesis" EXACT [] synonym: "macromolecule formation" EXACT [] synonym: "macromolecule synthesis" EXACT [] +is_a: GO:0009058 ! biosynthetic process is_a: GO:0043170 ! macromolecule metabolic process -is_a: GO:0044249 ! cellular biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:33694 ! biomacromolecule -relationship: has_primary_output CHEBI:33694 ! biomacromolecule +intersection_of: RO:0004008 CHEBI:33694 ! has primary output biomacromolecule +relationship: RO:0004008 CHEBI:33694 ! has primary output biomacromolecule property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/15249" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/25418" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI @@ -6330,8 +6355,8 @@ synonym: "embryonal development" EXACT [] xref: Wikipedia:Embryogenesis is_a: GO:0007275 ! multicellular organism development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000922 ! embryo -relationship: results_in_development_of UBERON:0000922 ! embryo +intersection_of: RO:0002296 UBERON:0000922 ! results in development of embryo +relationship: RO:0002296 UBERON:0000922 ! results in development of embryo [Term] id: GO:0009791 @@ -6350,7 +6375,7 @@ def: "The process whose specific outcome is the progression of an embryo over ti synonym: "embryogenesis" BROAD [] is_a: GO:0009790 ! embryo development relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa [Term] id: GO:0009888 @@ -6362,15 +6387,15 @@ synonym: "histogenesis and organogenesis" BROAD [] xref: Wikipedia:Histogenesis is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000479 ! tissue +intersection_of: RO:0002296 UBERON:0000479 ! results in development of tissue relationship: in_taxon NCBITaxon:2759 {all_only="true"} ! Eukaryota relationship: never_in_taxon NCBITaxon:147554 relationship: never_in_taxon NCBITaxon:33630 relationship: never_in_taxon NCBITaxon:33682 relationship: never_in_taxon NCBITaxon:38254 relationship: never_in_taxon NCBITaxon:4891 -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota -relationship: results_in_development_of UBERON:0000479 ! tissue +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota +relationship: RO:0002296 UBERON:0000479 ! results in development of tissue [Term] id: GO:0009987 @@ -6425,7 +6450,7 @@ synonym: "transmembrane" RELATED [GOC:mah] synonym: "whole membrane" NARROW [] xref: Wikipedia:Biological_membrane xref: Wikipedia:Transmembrane_protein -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure creation_date: 2014-03-06T11:37:54Z [Term] @@ -6449,8 +6474,8 @@ synonym: "cellular component organization at cellular level" EXACT [] synonym: "cellular component organization in other organism" EXACT [] is_a: GO:0071840 ! cellular component organization or biogenesis intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_organization_of GO:0005575 ! cellular_component -relationship: results_in_organization_of GO:0005575 ! cellular_component +intersection_of: RO:0002592 GO:0005575 ! results in organization of cellular_component +relationship: RO:0002592 GO:0005575 ! results in organization of cellular_component [Term] id: GO:0016331 @@ -6468,9 +6493,11 @@ def: "The self-renewing division of a stem cell. A stem cell is an undifferentia synonym: "stem cell renewal" EXACT [] is_a: GO:0051301 ! cell division intersection_of: GO:0051301 ! cell division -intersection_of: has_primary_input CL:0000034 ! stem cell -relationship: has_primary_input CL:0000034 ! stem cell -relationship: never_in_taxon NCBITaxon_Union:0000023 +intersection_of: RO:0004009 CL:0000034 ! has primary input stem cell +relationship: never_in_taxon NCBITaxon:2 +relationship: never_in_taxon NCBITaxon:2157 +relationship: never_in_taxon NCBITaxon:4751 +relationship: RO:0004009 CL:0000034 ! has primary input stem cell [Term] id: GO:0018989 @@ -6517,10 +6544,9 @@ synonym: "protein metabolism" EXACT [] synonym: "protein metabolism and modification" EXACT [] xref: Wikipedia:Protein_metabolism is_a: GO:0044238 ! primary metabolic process -is_a: GO:1901564 ! organonitrogen compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output PR:000000001 ! protein -relationship: has_primary_input_or_output PR:000000001 ! protein +intersection_of: RO:0004007 PR:000000001 ! has primary input or output protein +relationship: RO:0004007 PR:000000001 ! has primary input or output protein property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23112" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI @@ -6532,10 +6558,10 @@ def: "The process whose specific outcome is the progression of the neural tube o is_a: GO:0035295 ! tube development is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001049 ! neural tube +intersection_of: RO:0002296 UBERON:0001049 ! results in development of neural tube relationship: part_of GO:0007399 ! nervous system development relationship: part_of GO:0043009 ! chordate embryonic development -relationship: results_in_development_of UBERON:0001049 ! neural tube +relationship: RO:0002296 UBERON:0001049 ! results in development of neural tube [Term] id: GO:0022404 @@ -6558,8 +6584,8 @@ synonym: "cell structure disassembly" EXACT [] synonym: "cellular component disassembly at cellular level" EXACT [] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_disassembly_of GO:0005575 ! cellular_component -relationship: results_in_disassembly_of GO:0005575 ! cellular_component +intersection_of: RO:0002590 GO:0005575 ! results in disassembly of cellular_component +relationship: RO:0002590 GO:0005575 ! results in disassembly of cellular_component property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI [Term] @@ -6586,9 +6612,9 @@ synonym: "cell structure assembly" EXACT [] synonym: "cellular component assembly at cellular level" EXACT [] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_assembly_of GO:0005575 ! cellular_component +intersection_of: RO:0002588 GO:0005575 ! results in assembly of cellular_component relationship: part_of GO:0044085 ! cellular component biogenesis -relationship: results_in_assembly_of GO:0005575 ! cellular_component +relationship: RO:0002588 GO:0005575 ! results in assembly of cellular_component [Term] id: GO:0022613 @@ -6611,9 +6637,9 @@ synonym: "RNP complex assembly" EXACT [] is_a: GO:0065003 ! protein-containing complex assembly is_a: GO:0071826 ! protein-RNA complex organization intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:1990904 ! ribonucleoprotein complex +intersection_of: RO:0002588 GO:1990904 ! results in assembly of ribonucleoprotein complex relationship: part_of GO:0022613 ! ribonucleoprotein complex biogenesis -relationship: results_in_assembly_of GO:1990904 ! ribonucleoprotein complex +relationship: RO:0002588 GO:1990904 ! results in assembly of ribonucleoprotein complex [Term] id: GO:0023052 @@ -6650,7 +6676,7 @@ subset: goslim_agr subset: goslim_drosophila subset: goslim_flybase_ribbon xref: Wikipedia:Cell_junction -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: never_in_taxon NCBITaxon:4751 [Term] @@ -6668,8 +6694,8 @@ subset: goslim_plant_ribbon xref: Wikipedia:Cellular_differentiation is_a: GO:0048869 ! cellular developmental process intersection_of: GO:0048869 ! cellular developmental process -intersection_of: results_in_acquisition_of_features_of CL:0000000 ! cell -relationship: results_in_acquisition_of_features_of CL:0000000 ! cell +intersection_of: RO:0002315 CL:0000000 ! results in acquisition of features of cell +relationship: RO:0002315 CL:0000000 ! results in acquisition of features of cell property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24390" xsd:anyURI [Term] @@ -6683,7 +6709,7 @@ subset: goslim_drosophila subset: goslim_generic subset: goslim_pir subset: goslim_plant -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of CL:0000000 ! cell relationship: part_of GO:0071944 ! cell periphery @@ -6756,8 +6782,8 @@ synonym: "protein complex disassembly" EXACT [] is_a: GO:0022411 ! cellular component disassembly is_a: GO:0043933 ! protein-containing complex organization intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0032991 ! protein-containing complex -relationship: results_in_disassembly_of GO:0032991 ! protein-containing complex +intersection_of: RO:0002590 GO:0032991 ! results in disassembly of protein-containing complex +relationship: RO:0002590 GO:0032991 ! results in disassembly of protein-containing complex property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22580" xsd:anyURI [Term] @@ -6795,8 +6821,8 @@ synonym: "transmembrane ion transport" EXACT [GOC:dph, GOC:tb] is_a: GO:0006811 ! monoatomic ion transport is_a: GO:0055085 ! transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:24867 ! monoatomic ion -intersection_of: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:24867 ! has primary input monoatomic ion [Term] id: GO:0035148 @@ -6807,9 +6833,9 @@ synonym: "lumen formation in an anatomical structure" RELATED [GOC:dph, GOC:mah] synonym: "tube lumen formation" EXACT [GOC:dph, GOC:mah] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000025 ! tube +intersection_of: RO:0002297 UBERON:0000025 ! results in formation of anatomical entity tube relationship: part_of GO:0035239 ! tube morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0000025 ! tube +relationship: RO:0002297 UBERON:0000025 ! results in formation of anatomical entity tube [Term] id: GO:0035209 @@ -6818,9 +6844,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the pupa over time, from its formation to the mature structure. The pupa is a dormant life stage interposed between the larval and the adult stages in insects that undergo a complete metamorphosis." [GOC:bf, GOC:mtg_sensu] is_a: GO:0002165 ! instar larval or pupal development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003143 ! pupa +intersection_of: RO:0002296 UBERON:0003143 ! results in development of pupa relationship: ends_with GO:0007562 ! eclosion -relationship: results_in_development_of UBERON:0003143 ! pupa +relationship: RO:0002296 UBERON:0003143 ! results in development of pupa relationship: starts_with GO:0018989 ! apolysis [Term] @@ -6830,9 +6856,9 @@ namespace: biological_process def: "The process in which the anatomical structures of a tube are generated and organized. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system." [GOC:bf, PMID:14624839] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000025 ! tube +intersection_of: RO:0002298 UBERON:0000025 ! results in morphogenesis of tube relationship: part_of GO:0035295 ! tube development -relationship: results_in_morphogenesis_of UBERON:0000025 ! tube +relationship: RO:0002298 UBERON:0000025 ! results in morphogenesis of tube [Term] id: GO:0035295 @@ -6841,9 +6867,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a tube over time, from its initial formation to a mature structure. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts." [PMID:12526790] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000025 ! tube +intersection_of: RO:0002296 UBERON:0000025 ! results in development of tube relationship: part_of GO:0007275 ! multicellular organism development -relationship: results_in_development_of UBERON:0000025 ! tube +relationship: RO:0002296 UBERON:0000025 ! results in development of tube [Term] id: GO:0040011 @@ -6887,7 +6913,7 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the embryo over time, from zygote formation through a stage including a notochord and neural tube until birth or egg hatching." [GOC:mtg_sensu] is_a: GO:0009792 ! embryo development ending in birth or egg hatching relationship: in_taxon NCBITaxon:7711 {all_only="true"} ! Chordata -relationship: only_in_taxon NCBITaxon:7711 ! Chordata +relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata [Term] id: GO:0043170 @@ -6905,8 +6931,8 @@ synonym: "multicellular organismal macromolecule metabolic process" NARROW [] synonym: "organismal macromolecule metabolism" EXACT [] is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:33694 ! biomacromolecule -relationship: has_primary_input_or_output CHEBI:33694 ! biomacromolecule +intersection_of: RO:0004007 CHEBI:33694 ! has primary input or output biomacromolecule +relationship: RO:0004007 CHEBI:33694 ! has primary input or output biomacromolecule property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI [Term] @@ -6928,8 +6954,8 @@ synonym: "protein complex subunit organization" EXACT [] synonym: "protein-containing complex subunit organization" RELATED [] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0032991 ! protein-containing complex -relationship: results_in_organization_of GO:0032991 ! protein-containing complex +intersection_of: RO:0002592 GO:0032991 ! results in organization of protein-containing complex +relationship: RO:0002592 GO:0032991 ! results in organization of protein-containing complex property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22580" xsd:anyURI created_by: mah creation_date: 2010-09-08T10:01:42Z @@ -6940,9 +6966,11 @@ name: cellular component biogenesis namespace: biological_process alt_id: GO:0071843 def: "A process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellular component. Includes biosynthesis of constituent macromolecules, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component." [GOC:jl, GOC:mah] +subset: gocheck_do_not_annotate subset: goslim_pir synonym: "cellular component biogenesis at cellular level" EXACT [] is_a: GO:0071840 ! cellular component organization or biogenesis +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27194" xsd:anyURI [Term] id: GO:0044207 @@ -6956,18 +6984,6 @@ relationship: part_of GO:0005737 ! cytoplasm created_by: jl creation_date: 2009-10-22T02:38:55Z -[Term] -id: GO:0044237 -name: cellular metabolic process -namespace: biological_process -def: "The chemical reactions and pathways by which individual cells transform chemical substances." [GOC:go_curators] -comment: This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term. -subset: gocheck_do_not_annotate -synonym: "cellular metabolism" EXACT [] -synonym: "intermediary metabolism" RELATED [GOC:mah] -is_a: GO:0008152 ! metabolic process -is_a: GO:0009987 ! cellular process - [Term] id: GO:0044238 name: primary metabolic process @@ -6983,21 +6999,6 @@ xref: Wikipedia:Primary_metabolite is_a: GO:0008152 ! metabolic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI -[Term] -id: GO:0044249 -name: cellular biosynthetic process -namespace: biological_process -def: "The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells." [GOC:jl] -comment: This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term. -subset: gocheck_do_not_annotate -synonym: "cellular anabolism" EXACT [] -synonym: "cellular biosynthesis" EXACT [] -synonym: "cellular formation" EXACT [] -synonym: "cellular synthesis" EXACT [] -is_a: GO:0009058 ! biosynthetic process -is_a: GO:0044237 ! cellular metabolic process -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27052" xsd:anyURI - [Term] id: GO:0045202 name: synapse @@ -7017,7 +7018,7 @@ xref: NIF_Subcellular:sao914572699 xref: Wikipedia:Chemical_synapse is_a: GO:0030054 ! cell junction relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa [Term] id: GO:0048103 @@ -7027,8 +7028,8 @@ def: "The self-renewing division of a somatic stem cell, a stem cell that can gi synonym: "somatic stem cell renewal" EXACT [] is_a: GO:0017145 ! stem cell division intersection_of: GO:0051301 ! cell division -intersection_of: has_primary_input CL:0000723 ! somatic stem cell -relationship: has_primary_input CL:0000723 ! somatic stem cell +intersection_of: RO:0004009 CL:0000723 ! has primary input somatic stem cell +relationship: RO:0004009 CL:0000723 ! has primary input somatic stem cell [Term] id: GO:0048332 @@ -7037,9 +7038,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the mesoderm are generated and organized." [GOC:go_curators] is_a: GO:0048729 ! tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000926 ! mesoderm +intersection_of: RO:0002298 UBERON:0000926 ! results in morphogenesis of mesoderm relationship: part_of GO:0007498 ! mesoderm development -relationship: results_in_morphogenesis_of UBERON:0000926 ! mesoderm +relationship: RO:0002298 UBERON:0000926 ! results in morphogenesis of mesoderm [Term] id: GO:0048513 @@ -7080,9 +7081,9 @@ namespace: biological_process def: "The process in which the anatomical structures of a tissue are generated and organized." [GOC:dph, GOC:jid] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000479 ! tissue +intersection_of: RO:0002298 UBERON:0000479 ! results in morphogenesis of tissue relationship: part_of GO:0009888 ! tissue development -relationship: results_in_morphogenesis_of UBERON:0000479 ! tissue +relationship: RO:0002298 UBERON:0000479 ! results in morphogenesis of tissue [Term] id: GO:0048731 @@ -7092,9 +7093,9 @@ def: "The process whose specific outcome is the progression of an organismal sys subset: goslim_mouse is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000467 ! anatomical system +intersection_of: RO:0002296 UBERON:0000467 ! results in development of anatomical system relationship: part_of GO:0007275 ! multicellular organism development -relationship: results_in_development_of UBERON:0000467 ! anatomical system +relationship: RO:0002296 UBERON:0000467 ! results in development of anatomical system [Term] id: GO:0048856 @@ -7109,8 +7110,8 @@ subset: goslim_plant_ribbon synonym: "development of an anatomical structure" EXACT [] is_a: GO:0032502 ! developmental process intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of UBERON:0000061 ! anatomical structure -relationship: results_in_development_of UBERON:0000061 ! anatomical structure +intersection_of: RO:0002296 UBERON:0000061 ! results in development of anatomical structure +relationship: RO:0002296 UBERON:0000061 ! results in development of anatomical structure property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI [Term] @@ -7133,8 +7134,8 @@ subset: goslim_pir synonym: "regulation of physiological process" EXACT [] is_a: GO:0065007 ! biological regulation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008150 ! biological_process -relationship: regulates GO:0008150 ! biological_process +intersection_of: RO:0002211 GO:0008150 ! regulates (processual) biological_process +relationship: RO:0002211 GO:0008150 ! regulates (processual) biological_process [Term] id: GO:0050877 @@ -7151,10 +7152,10 @@ synonym: "neurophysiological process" EXACT [] synonym: "pan-neural process" RELATED [] is_a: GO:0003008 ! system process intersection_of: GO:0003008 ! system process -intersection_of: has_participant UBERON:0001016 ! nervous system -relationship: has_participant UBERON:0001016 ! nervous system +intersection_of: RO:0000057 UBERON:0001016 ! has participant nervous system relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0000057 UBERON:0001016 ! has participant nervous system +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/13824" xsd:anyURI [Term] @@ -7222,8 +7223,8 @@ synonym: "membrane transport" EXACT [] is_a: GO:0006810 ! transport is_a: GO:0009987 ! cellular process intersection_of: GO:0006810 ! transport -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0002342 GO:0016020 ! results in transport across membrane created_by: tb creation_date: 2015-10-21T13:22:47Z @@ -7235,8 +7236,8 @@ def: "The process whose specific outcome is the progression of an epithelium ove subset: goslim_drosophila is_a: GO:0009888 ! tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000483 ! epithelium -relationship: results_in_development_of UBERON:0000483 ! epithelium +intersection_of: RO:0002296 UBERON:0000483 ! results in development of epithelium +relationship: RO:0002296 UBERON:0000483 ! results in development of epithelium [Term] id: GO:0060562 @@ -7246,8 +7247,8 @@ def: "The process in which the anatomical structures of a tube are generated and is_a: GO:0002009 ! morphogenesis of an epithelium is_a: GO:0035239 ! tube morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003914 ! epithelial tube -relationship: results_in_morphogenesis_of UBERON:0003914 ! epithelial tube +intersection_of: RO:0002298 UBERON:0003914 ! results in morphogenesis of epithelial tube +relationship: RO:0002298 UBERON:0003914 ! results in morphogenesis of epithelial tube created_by: dph creation_date: 2009-04-28T09:33:36Z @@ -7258,7 +7259,7 @@ namespace: cellular_component def: "An extracellular matrix consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that provides not only essential physical scaffolding for the cellular constituents but can also initiate crucial biochemical and biomechanical cues required for tissue morphogenesis, differentiation and homeostasis. The components are secreted by cells in the vicinity and form a sheet underlying or overlying cells such as endothelial and epithelial cells." [GOC:BHF, GOC:rph, PMID:21123617] is_a: GO:0031012 ! extracellular matrix relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa created_by: dph creation_date: 2018-04-13T12:47:21Z @@ -7288,8 +7289,8 @@ synonym: "protein complex formation" RELATED [] is_a: GO:0022607 ! cellular component assembly is_a: GO:0043933 ! protein-containing complex organization intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0032991 ! protein-containing complex -relationship: results_in_assembly_of GO:0032991 ! protein-containing complex +intersection_of: RO:0002588 GO:0032991 ! results in assembly of protein-containing complex +relationship: RO:0002588 GO:0032991 ! results in assembly of protein-containing complex property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22580" xsd:anyURI [Term] @@ -7330,8 +7331,8 @@ synonym: "ribonucleoprotein complex subunit organization" EXACT [] synonym: "RNA-protein complex subunit organization" EXACT [GOC:mah] is_a: GO:0043933 ! protein-containing complex organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:1990904 ! ribonucleoprotein complex -relationship: results_in_organization_of GO:1990904 ! ribonucleoprotein complex +intersection_of: RO:0002592 GO:1990904 ! results in organization of ribonucleoprotein complex +relationship: RO:0002592 GO:1990904 ! results in organization of ribonucleoprotein complex property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/25143" xsd:anyURI created_by: mah creation_date: 2010-09-08T10:10:35Z @@ -7360,7 +7361,7 @@ name: cell periphery namespace: cellular_component def: "The broad region around and including the plasma membrane of a cell, encompassing the cell cortex (inside the cell), the plasma membrane, and any external encapsulating structures." [GOC:pdt] subset: goslim_flybase_ribbon -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure created_by: mah creation_date: 2010-10-04T01:51:47Z @@ -7371,9 +7372,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of an epithelial tube." [GOC:mtg_kidney_jan10] is_a: GO:0035148 ! tube formation intersection_of: GO:0035148 ! tube formation -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003914 ! epithelial tube +intersection_of: RO:0002297 UBERON:0003914 ! results in formation of anatomical entity epithelial tube relationship: part_of GO:0060562 ! epithelial tube morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0003914 ! epithelial tube +relationship: RO:0002297 UBERON:0003914 ! results in formation of anatomical entity epithelial tube property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22302" xsd:anyURI created_by: mah creation_date: 2010-02-26T02:15:40Z @@ -7424,7 +7425,7 @@ namespace: cellular_component def: "The part of a synapse that is part of the presynaptic cell." [GOC:dos] subset: goslim_synapse synonym: "presynaptic terminal" EXACT [] -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of CL:0000540 ! neuron relationship: part_of GO:0045202 ! synapse @@ -7434,7 +7435,7 @@ name: postsynapse namespace: cellular_component def: "The part of a synapse that is part of the post-synaptic cell." [GOC:dos] subset: goslim_synapse -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of CL:0000000 ! cell relationship: part_of GO:0045202 ! synapse @@ -7445,17 +7446,17 @@ namespace: biological_process def: "Cell-cell signaling from pre to post-synapse, across the synaptic cleft." [GOC:dos] is_a: GO:0099537 ! trans-synaptic signaling intersection_of: GO:0099537 ! trans-synaptic signaling -intersection_of: has_end_location GO:0098794 ! postsynapse -intersection_of: has_start_location GO:0098793 ! presynapse -relationship: has_end_location GO:0098794 ! postsynapse -relationship: has_start_location GO:0098793 ! presynapse +intersection_of: RO:0002231 GO:0098793 ! has start location presynapse +intersection_of: RO:0002232 GO:0098794 ! has end location postsynapse +relationship: RO:0002231 GO:0098793 ! has start location presynapse +relationship: RO:0002232 GO:0098794 ! has end location postsynapse [Term] id: GO:0099080 name: supramolecular complex namespace: cellular_component def: "A cellular component that consists of an indeterminate number of proteins or macromolecular complexes, organized into a regular, higher-order structure such as a polymer, sheet, network or a fiber." [GOC:dos] -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure [Term] id: GO:0099081 @@ -7464,8 +7465,8 @@ namespace: cellular_component def: "A polymeric supramolecular structure." [GOC:dos] is_a: GO:0099080 ! supramolecular complex intersection_of: GO:0099080 ! supramolecular complex -intersection_of: has_characteristic PATO:0015006 ! polymeric -relationship: has_characteristic PATO:0015006 ! polymeric +intersection_of: RO:0000053 PATO:0015006 ! has characteristic polymeric +relationship: RO:0000053 PATO:0015006 ! has characteristic polymeric [Term] id: GO:0099536 @@ -7476,10 +7477,10 @@ subset: goslim_drosophila subset: goslim_synapse is_a: GO:0007267 ! cell-cell signaling intersection_of: GO:0007267 ! cell-cell signaling -intersection_of: occurs_in GO:0045202 ! synapse +intersection_of: BFO:0000066 GO:0045202 ! occurs in synapse +relationship: BFO:0000066 GO:0045202 ! occurs in synapse relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: occurs_in GO:0045202 ! synapse -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa [Term] id: GO:0099537 @@ -7491,34 +7492,21 @@ is_a: GO:0099536 ! synaptic signaling [Term] id: GO:0110165 -name: cellular anatomical entity +name: cellular anatomical structure namespace: cellular_component -def: "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex." [GOC:kmv] +def: "A part of a cellular organism consisting of a material entity with granularity above the level of a protein complex but below that of an anatomical system. Note that cellular organisms exclude viruses." [GOC:kmv] subset: gocheck_do_not_annotate subset: goslim_pir +synonym: "cellular anatomical entity" EXACT [] is_a: CARO:0000000 ! anatomical entity is_a: GO:0005575 ! cellular_component is_a: UBERON:0000061 ! anatomical structure property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24200" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28978" xsd:anyURI created_by: kmv creation_date: 2019-08-12T18:01:37Z -[Term] -id: GO:1901564 -name: organonitrogen compound metabolic process -namespace: biological_process -def: "The chemical reactions and pathways involving organonitrogen compound." [GOC:pr, GOC:TermGenie] -subset: gocheck_do_not_annotate -synonym: "organonitrogen compound metabolism" EXACT [GOC:TermGenie] -is_a: GO:0008152 ! metabolic process -intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:35352 ! organonitrogen compound -relationship: has_primary_input_or_output CHEBI:35352 ! organonitrogen compound -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI -created_by: pr -creation_date: 2012-11-04T15:17:52Z - [Term] id: GO:1990904 name: ribonucleoprotein complex @@ -7548,8 +7536,8 @@ subset: life_stage synonym: "neonate stage" RELATED [] synonym: "under-1-month-old chicken stage" EXACT [] is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000112 ! sexually immature stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_mph "1.0" xsd:float property_value: IAO:0000589 "hatchling stage (chicken)" xsd:string property_value: start_dpf "21.0" xsd:float @@ -7563,8 +7551,8 @@ def: "Mature stage that refers to a chicken who is over 12 and under 24 months o subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000087 ! 11-month-old stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000078 ! young adult stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_mph "24.0" xsd:float property_value: IAO:0000589 "1-year-old stage (chicken)" xsd:string property_value: start_mph "12.0" xsd:float @@ -7578,8 +7566,8 @@ comment: Starts at day 1 post-fertilization, after laying. This stage covers the subset: life_stage synonym: "HH1" EXACT [] is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000108 ! blastula stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: IAO:0000589 "Hamburger Hamilton stage 1 (chicken)" xsd:string property_value: start_dpf "1.0" xsd:float property_value: start_dpf "1.25" xsd:float @@ -7593,8 +7581,8 @@ comment: Usually obtained after 12-13 hours of incubation. subset: life_stage synonym: "HH3" EXACT [] is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000109 ! gastrula stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "1.75" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 3 (chicken)" xsd:string property_value: start_dpf "1.5" xsd:float @@ -7609,8 +7597,8 @@ subset: life_stage synonym: "HH4" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000012 ! Hamburger Hamilton stage 3 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000109 ! gastrula stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "1.8" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 4 (chicken)" xsd:string property_value: start_dpf "1.75" xsd:float @@ -7624,8 +7612,8 @@ comment: Usually obtained after 23-26 hours of incubation. Includes the stage de subset: life_stage synonym: "HH7" RELATED [] is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "2.1" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 7 (chicken)" xsd:string property_value: start_dpf "2.0" xsd:float @@ -7640,8 +7628,8 @@ subset: life_stage synonym: "HH8" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000015 ! Hamburger Hamilton stage 7 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "2.2" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 8 (chicken)" xsd:string property_value: start_dpf "2.1" xsd:float @@ -7656,8 +7644,8 @@ subset: life_stage synonym: "HH9" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000017 ! Hamburger Hamilton stage 8 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "2.4" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 9 (chicken)" xsd:string property_value: start_dpf "2.2" xsd:float @@ -7671,8 +7659,8 @@ comment: Usually obtained at ca. 33 hours of incubation. subset: life_stage synonym: "HH9+ to 10-" RELATED [] is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000018 ! Hamburger Hamilton stage 9 (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "2.4" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stages 9+ to 10- (chicken)" xsd:string property_value: start_dpf "2.3" xsd:float @@ -7687,8 +7675,8 @@ subset: life_stage synonym: "HH10" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000019 ! Hamburger Hamilton stages 9+ to 10- (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "2.6" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 10 (chicken)" xsd:string property_value: start_dpf "2.4" xsd:float @@ -7703,8 +7691,8 @@ subset: life_stage synonym: "HH11" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000020 ! Hamburger Hamilton stage 10 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "2.9" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 11 (chicken)" xsd:string property_value: start_dpf "2.6" xsd:float @@ -7719,8 +7707,8 @@ subset: life_stage synonym: "HH12" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000021 ! Hamburger Hamilton stage 11 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "3.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 12 (chicken)" xsd:string property_value: start_dpf "2.9" xsd:float @@ -7735,8 +7723,8 @@ subset: life_stage synonym: "HH13" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000022 ! Hamburger Hamilton stage 12 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "3.2" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 13 (chicken)" xsd:string property_value: start_dpf "3.0" xsd:float @@ -7750,8 +7738,8 @@ comment: Usually obtained after ca.50-52 hours of incubation. subset: life_stage synonym: "HH13+ to 14-" EXACT [] is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000023 ! Hamburger Hamilton stage 13 (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "3.2" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stages 13+ to 14- (chicken)" xsd:string property_value: start_dpf "3.1" xsd:float @@ -7766,8 +7754,8 @@ subset: life_stage synonym: "HH14" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000024 ! Hamburger Hamilton stages 13+ to 14- (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "3.25" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 14 (chicken)" xsd:string property_value: start_dpf "3.2" xsd:float @@ -7781,8 +7769,8 @@ comment: Usually obtained after ca.50-54 hours of incubation. subset: life_stage synonym: "HH14+ to 15-" RELATED [] is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000025 ! Hamburger Hamilton stage 14 (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "3.25" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stages 14+ to 15- (chicken)" xsd:string property_value: start_dpf "3.21" xsd:float @@ -7797,8 +7785,8 @@ subset: life_stage synonym: "HH15" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000026 ! Hamburger Hamilton stages 14+ to 15- (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "3.3" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 15 (chicken)" xsd:string property_value: start_dpf "3.25" xsd:float @@ -7813,8 +7801,8 @@ subset: life_stage synonym: "HH16" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000027 ! Hamburger Hamilton stage 15 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "3.35" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 16 (chicken)" xsd:string property_value: start_dpf "3.3" xsd:float @@ -7829,8 +7817,8 @@ subset: life_stage synonym: "HH17" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000028 ! Hamburger Hamilton stage 16 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "3.7" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 17 (chicken)" xsd:string property_value: start_dpf "3.35" xsd:float @@ -7845,8 +7833,8 @@ subset: life_stage synonym: "HH18" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000029 ! Hamburger Hamilton stage 17 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "3.75" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 18 (chicken)" xsd:string property_value: start_dpf "3.7" xsd:float @@ -7861,8 +7849,8 @@ subset: life_stage synonym: "HH19" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000030 ! Hamburger Hamilton stage 18 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "3.8" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 19 (chicken)" xsd:string property_value: start_dpf "3.75" xsd:float @@ -7877,8 +7865,8 @@ subset: life_stage synonym: "HH20" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000031 ! Hamburger Hamilton stage 19 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "4.5" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 20 (chicken)" xsd:string property_value: start_dpf "3.8" xsd:float @@ -7893,8 +7881,8 @@ subset: life_stage synonym: "HH21" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000034 ! Hamburger Hamilton stage 20 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "4.6" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 21 (chicken)" xsd:string property_value: start_dpf "4.5" xsd:float @@ -7909,8 +7897,8 @@ subset: life_stage synonym: "HH22" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000035 ! Hamburger Hamilton stage 21 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "5.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 22 (chicken)" xsd:string property_value: start_dpf "4.6" xsd:float @@ -7925,8 +7913,8 @@ subset: life_stage synonym: "HH23" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000036 ! Hamburger Hamilton stage 22 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "5.5" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 23 (chicken)" xsd:string property_value: start_dpf "5.0" xsd:float @@ -7941,8 +7929,8 @@ subset: life_stage synonym: "HH24" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000037 ! Hamburger Hamilton stage 23 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "5.6" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 24 (chicken)" xsd:string property_value: start_dpf "5.5" xsd:float @@ -7957,8 +7945,8 @@ subset: life_stage synonym: "HH25" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000038 ! Hamburger Hamilton stage 24 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "6.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 25 (chicken)" xsd:string property_value: start_dpf "5.6" xsd:float @@ -7973,8 +7961,8 @@ subset: life_stage synonym: "HH26" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000039 ! Hamburger Hamilton stage 25 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "6.1" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 26 (chicken)" xsd:string property_value: start_dpf "6.0" xsd:float @@ -7989,8 +7977,8 @@ subset: life_stage synonym: "HH27" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000040 ! Hamburger Hamilton stage 26 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "6.5" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 27 (chicken)" xsd:string property_value: start_dpf "6.1" xsd:float @@ -8005,8 +7993,8 @@ subset: life_stage synonym: "HH28" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000041 ! Hamburger Hamilton stage 27 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "7.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 28 (chicken)" xsd:string property_value: start_dpf "6.5" xsd:float @@ -8021,8 +8009,8 @@ subset: life_stage synonym: "HH29" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000042 ! Hamburger Hamilton stage 28 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "7.5" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 29 (chicken)" xsd:string property_value: start_dpf "7.0" xsd:float @@ -8037,8 +8025,8 @@ subset: life_stage synonym: "HH30" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000043 ! Hamburger Hamilton stage 29 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "8.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 30 (chicken)" xsd:string property_value: start_dpf "7.5" xsd:float @@ -8053,8 +8041,8 @@ subset: life_stage synonym: "HH31" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000044 ! Hamburger Hamilton stage 30 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "8.5" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 31 (chicken)" xsd:string property_value: start_dpf "8.0" xsd:float @@ -8069,8 +8057,8 @@ subset: life_stage synonym: "HH32" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000045 ! Hamburger Hamilton stage 31 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "8.6" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 32 (chicken)" xsd:string property_value: start_dpf "8.5" xsd:float @@ -8085,8 +8073,8 @@ subset: life_stage synonym: "HH33" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000046 ! Hamburger Hamilton stage 32 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "9.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 33 (chicken)" xsd:string property_value: start_dpf "8.6" xsd:float @@ -8101,8 +8089,8 @@ subset: life_stage synonym: "HH34" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000047 ! Hamburger Hamilton stage 33 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "9.5" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 34 (chicken)" xsd:string property_value: start_dpf "9.0" xsd:float @@ -8117,8 +8105,8 @@ subset: life_stage synonym: "HH35" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000048 ! Hamburger Hamilton stage 34 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "11.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 35 (chicken)" xsd:string property_value: start_dpf "9.5" xsd:float @@ -8133,8 +8121,8 @@ subset: life_stage synonym: "HH36" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000049 ! Hamburger Hamilton stage 35 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "12.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 36 (chicken)" xsd:string property_value: start_dpf "11.0" xsd:float @@ -8149,8 +8137,8 @@ subset: life_stage synonym: "HH37" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000050 ! Hamburger Hamilton stage 36 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "13.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 37 (chicken)" xsd:string property_value: start_dpf "12.0" xsd:float @@ -8165,8 +8153,8 @@ subset: life_stage synonym: "HH38" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000051 ! Hamburger Hamilton stage 37 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "14.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 38 (chicken)" xsd:string property_value: start_dpf "13.0" xsd:float @@ -8181,8 +8169,8 @@ subset: life_stage synonym: "HH39" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000052 ! Hamburger Hamilton stage 38 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "15.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 39 (chicken)" xsd:string property_value: start_dpf "14.0" xsd:float @@ -8197,8 +8185,8 @@ subset: life_stage synonym: "HH40" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000053 ! Hamburger Hamilton stage 39 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "16.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 40 (chicken)" xsd:string property_value: start_dpf "15.0" xsd:float @@ -8213,8 +8201,8 @@ subset: life_stage synonym: "HH41" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000054 ! Hamburger Hamilton stage 40 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "17.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 41 (chicken)" xsd:string property_value: start_dpf "16.0" xsd:float @@ -8229,8 +8217,8 @@ subset: life_stage synonym: "HH42" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000055 ! Hamburger Hamilton stage 41 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "18.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 42 (chicken)" xsd:string property_value: start_dpf "17.0" xsd:float @@ -8245,8 +8233,8 @@ subset: life_stage synonym: "HH43" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000056 ! Hamburger Hamilton stage 42 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "19.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 43 (chicken)" xsd:string property_value: start_dpf "18.0" xsd:float @@ -8261,8 +8249,8 @@ subset: life_stage synonym: "HH44" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000057 ! Hamburger Hamilton stage 43 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "20.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 44 (chicken)" xsd:string property_value: start_dpf "19.0" xsd:float @@ -8277,8 +8265,8 @@ subset: life_stage synonym: "HH45" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000058 ! Hamburger Hamilton stage 44 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "21.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 45 (chicken)" xsd:string property_value: start_dpf "20.0" xsd:float @@ -8293,8 +8281,8 @@ subset: life_stage synonym: "HH2" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000010 ! Hamburger Hamilton stage 1 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000108 ! blastula stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "1.5" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stages 2 (chicken)" xsd:string property_value: start_dpf "1.25" xsd:float @@ -8308,8 +8296,8 @@ comment: Usually obtained after 19-22 hours of incubation. subset: life_stage synonym: "HH5" EXACT [] is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000110 ! neurula stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "1.9" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stages 5 (chicken)" xsd:string property_value: start_dpf "1.8" xsd:float @@ -8324,8 +8312,8 @@ subset: life_stage synonym: "HH6" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000061 ! Hamburger Hamilton stages 5 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000110 ! neurula stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "2.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stages 6 (chicken)" xsd:string property_value: start_dpf "1.9" xsd:float @@ -8339,8 +8327,8 @@ comment: This stage covers the first 3.5-4.5 hours of development after fertiliz subset: life_stage synonym: "HH early cleavage" EXACT [] is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000107 ! cleavage stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "0.2" xsd:float property_value: IAO:0000589 "early cleavage stage (chicken)" xsd:string property_value: start_dpf "0.0" xsd:float @@ -8355,8 +8343,8 @@ subset: life_stage synonym: "HH late cleavage" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000063 ! early cleavage stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0000107 ! cleavage stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "1.0" xsd:float property_value: IAO:0000589 "late cleavage stage (chicken)" xsd:string property_value: start_dpf "0.2" xsd:float @@ -8370,8 +8358,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000090 ! Hamburger Hamilton stage 46 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000004 ! hatchling stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dph "2.0" xsd:float property_value: IAO:0000589 "1-day-old stage (chicken)" xsd:string property_value: start_dph "1.0" xsd:float @@ -8385,8 +8373,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000066 ! 1-day-old stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000004 ! hatchling stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dph "3.0" xsd:float property_value: IAO:0000589 "2-day-old stage (chicken)" xsd:string property_value: start_dph "2.0" xsd:float @@ -8400,8 +8388,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000067 ! 2-day-old stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000004 ! hatchling stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dph "4.0" xsd:float property_value: IAO:0000589 "3-day-old stage (chicken)" xsd:string property_value: start_dph "3.0" xsd:float @@ -8415,8 +8403,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000068 ! 3-day-old stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000004 ! hatchling stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dph "5.0" xsd:float property_value: IAO:0000589 "4-day-old stage (chicken)" xsd:string property_value: start_dph "4.0" xsd:float @@ -8430,8 +8418,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000069 ! 4-day-old stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000004 ! hatchling stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dph "6.0" xsd:float property_value: IAO:0000589 "5-day-old stage (chicken)" xsd:string property_value: start_dph "5.0" xsd:float @@ -8445,8 +8433,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000070 ! 5-day-old stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000004 ! hatchling stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dph "7.0" xsd:float property_value: IAO:0000589 "6-day-old stage (chicken)" xsd:string property_value: start_dph "6.0" xsd:float @@ -8460,8 +8448,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000071 ! 6-day-old stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000004 ! hatchling stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_wph "2.0" xsd:float property_value: IAO:0000589 "1-week-old stage (chicken)" xsd:string property_value: start_wph "1.0" xsd:float @@ -8475,8 +8463,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000072 ! 1-week-old stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000004 ! hatchling stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_wph "3.0" xsd:float property_value: IAO:0000589 "2-week-old stage (chicken)" xsd:string property_value: start_wph "2.0" xsd:float @@ -8490,8 +8478,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000073 ! 2-week-old stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000004 ! hatchling stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_wph "4.0" xsd:float property_value: IAO:0000589 "3-week-old stage (chicken)" xsd:string property_value: start_wph "3.0" xsd:float @@ -8505,8 +8493,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000074 ! 3-week-old stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000004 ! hatchling stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_wph "5.0" xsd:float property_value: IAO:0000589 "4-week-old stage (chicken)" xsd:string property_value: start_wph "4.0" xsd:float @@ -8519,8 +8507,8 @@ def: "Chicken developmental stage that refers to a chicken who is over 5 months comment: Chicken are considered as having a short life spans (under 6 yrs)(see https://pubmed.ncbi.nlm.nih.gov/12855282/). We define here the usual period when egg laying in females is the more active. subset: life_stage is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_mph "24.0" xsd:float property_value: end_yph "2.0" xsd:float property_value: IAO:0000589 "young adult stage (chicken)" xsd:string @@ -8536,8 +8524,8 @@ comment: Chicken are considered as having a short life spans (under 6 yrs)(see h subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000078 ! young adult stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_yph "4.0" xsd:float property_value: IAO:0000589 "middle adult stage (chicken)" xsd:string property_value: start_yph "2.0" xsd:float @@ -8551,8 +8539,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by UBERON:0034919 ! juvenile stage -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000078 ! young adult stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_mph "6.0" xsd:float property_value: IAO:0000589 "5-month-old stage (chicken)" xsd:string property_value: start_mph "5.0" xsd:float @@ -8566,8 +8554,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000081 ! 5-month-old stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000078 ! young adult stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_mph "7.0" xsd:float property_value: IAO:0000589 "6-month-old stage (chicken)" xsd:string property_value: start_mph "6.0" xsd:float @@ -8581,8 +8569,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000082 ! 6-month-old stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000078 ! young adult stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_mph "8.0" xsd:float property_value: IAO:0000589 "7-month-old stage (chicken)" xsd:string property_value: start_mph "7.0" xsd:float @@ -8596,8 +8584,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000083 ! 7-month-old stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000078 ! young adult stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_mph "9.0" xsd:float property_value: IAO:0000589 "8-month-old stage (chicken)" xsd:string property_value: start_mph "8.0" xsd:float @@ -8611,8 +8599,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000084 ! 8-month-old stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000078 ! young adult stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_mph "10.0" xsd:float property_value: IAO:0000589 "9-month-old stage (chicken)" xsd:string property_value: start_mph "9.0" xsd:float @@ -8626,8 +8614,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000085 ! 9-month-old stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000078 ! young adult stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_mph "11.0" xsd:float property_value: IAO:0000589 "10-month-old stage (chicken)" xsd:string property_value: start_mph "10.0" xsd:float @@ -8641,8 +8629,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000086 ! 10-month-old stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000078 ! young adult stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_mph "12.0" xsd:float property_value: IAO:0000589 "11-month-old stage (chicken)" xsd:string property_value: start_mph "11.0" xsd:float @@ -8655,8 +8643,8 @@ def: "Mature stage that refers to a chicken who is over 2 and under 3 years old. subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000008 ! 1-year-old stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000079 ! middle adult stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_yph "3.0" xsd:float property_value: IAO:0000589 "2-year-old stage (chicken)" xsd:string property_value: start_yph "2.0" xsd:float @@ -8669,8 +8657,8 @@ def: "Mature stage that refers to a chicken who is over 3 and under 4 years old. subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000088 ! 2-year-old stage (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000079 ! middle adult stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_yph "4.0" xsd:float property_value: IAO:0000589 "3-year-old stage (chicken)" xsd:string property_value: start_yph "3.0" xsd:float @@ -8685,8 +8673,8 @@ subset: life_stage synonym: "HH46" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by GgalDv:0000059 ! Hamburger Hamilton stage 45 (chicken) -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: part_of GgalDv:0000004 ! hatchling stage (chicken) +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus property_value: end_dpf "22.0" xsd:float property_value: end_dph "1.0" xsd:float property_value: IAO:0000589 "Hamburger Hamilton stage 46 (chicken)" xsd:string @@ -9026,8 +9014,8 @@ xref: EV:0300001 xref: FMA:72652 xref: HP:0011460 is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000068 ! embryo stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "56.0" xsd:float property_value: IAO:0000589 "embryonic stage (human)" xsd:string property_value: start_dpf "0.0" xsd:float @@ -9045,8 +9033,8 @@ xref: FMA:295907 xref: XUO:0000132 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000205 ! morula stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000108 ! blastula stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: has_stage_marker GO:0001835 property_value: IAO:0000589 "Carnegie stage 03 (human)" xsd:string property_value: start_dpf "4.5" xsd:float @@ -9064,8 +9052,8 @@ xref: FMA:295908 xref: XUO:0000133 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000007 ! Carnegie stage 03 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000108 ! blastula stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: editor_notes "Note that GO treats blastocyst attachment and implantation (CS05) as synonymous" xsd:string property_value: IAO:0000589 "Carnegie stage 04 (human)" xsd:string property_value: start_dpf "5.5" xsd:float @@ -9082,8 +9070,8 @@ xref: FMA:295909 xref: XUO:0000134 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000008 ! Carnegie stage 04 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000108 ! blastula stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: has_stage_marker GO:0007566 property_value: IAO:0000589 "Carnegie stage 05 (human)" xsd:string property_value: start_dpf "7.0" xsd:float @@ -9101,8 +9089,8 @@ xref: XUO:0000135 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000009 ! Carnegie stage 05 (human) relationship: immediately_preceded_by HsapDv:0000033 ! Carnegie stage 05c (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000109 ! gastrula stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: has_stage_marker EHDAA2:0000474 property_value: has_stage_marker EHDAA2:0001525 property_value: IAO:0000589 "Carnegie stage 06 (human)" xsd:string @@ -9122,8 +9110,8 @@ xref: XUO:0000136 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000011 ! Carnegie stage 06 (human) relationship: immediately_preceded_by HsapDv:0000035 ! Carnegie stage 06b (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000110 ! neurula stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: has_stage_marker EHDAA2:0001279 property_value: IAO:0000589 "Carnegie stage 07 (human)" xsd:string property_value: start_dpf "15.0" xsd:float @@ -9141,8 +9129,8 @@ xref: FMA:295912 xref: XUO:0000137 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000013 ! Carnegie stage 07 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000110 ! neurula stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: has_stage_marker EHDAA2:0001521 property_value: has_stage_marker UBERON:0013704 property_value: IAO:0000589 "Carnegie stage 08 (human)" xsd:string @@ -9161,8 +9149,8 @@ xref: FMA:295913 xref: XUO:0000138 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000014 ! Carnegie stage 08 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: has_stage_marker EHDAA2:0000214 property_value: has_stage_marker EHDAA2:0001249 property_value: has_stage_marker EHDAA2:0001849 @@ -9184,8 +9172,8 @@ xref: FMA:295914 xref: XUO:0000139 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000016 ! Carnegie stage 09 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: has_stage_marker EHDAA2:0001852 property_value: has_stage_marker EHDAA2:0001853 property_value: has_stage_marker EHDAA2:0001854 @@ -9212,8 +9200,8 @@ xref: FMA:295915 xref: XUO:0000140 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000017 ! Carnegie stage 10 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: has_stage_marker EHDAA2:0001861 property_value: has_stage_marker EHDAA2:0001862 property_value: has_stage_marker EHDAA2:0001863 @@ -9238,8 +9226,8 @@ xref: FMA:295916 xref: XUO:0000141 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000018 ! Carnegie stage 11 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: has_stage_marker EHDAA2:0001869 property_value: has_stage_marker EHDAA2:0001870 property_value: has_stage_marker EHDAA2:0001871 @@ -9266,8 +9254,8 @@ xref: FMA:295917 xref: XUO:0000142 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000019 ! Carnegie stage 12 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: has_stage_marker EHDAA2:0000982 property_value: has_stage_marker EHDAA2:0001033 property_value: has_stage_marker EHDAA2:0001878 @@ -9287,8 +9275,8 @@ xref: FMA:295918 xref: XUO:0000143 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000020 ! Carnegie stage 13 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: has_stage_marker EHDAA2:0000981 property_value: has_stage_marker EHDAA2:0001303 property_value: IAO:0000589 "Carnegie stage 14 (human)" xsd:string @@ -9307,8 +9295,8 @@ xref: FMA:295928 xref: XUO:0000144 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000021 ! Carnegie stage 14 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: has_stage_marker EHDAA2:0000728 property_value: has_stage_marker EHDAA2:0000983 property_value: has_stage_marker UBERON:0005426 @@ -9330,8 +9318,8 @@ xref: FMA:295919 xref: XUO:0000145 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000022 ! Carnegie stage 15 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: has_stage_marker EHDAA2:0000155 property_value: has_stage_marker EHDAA2:0000546 property_value: has_stage_marker UBERON:0006871 @@ -9351,8 +9339,8 @@ xref: FMA:295920 xref: XUO:0000146 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000023 ! Carnegie stage 16 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: IAO:0000589 "Carnegie stage 17 (human)" xsd:string property_value: start_dpf "42.0" xsd:float @@ -9369,8 +9357,8 @@ xref: FMA:295921 xref: XUO:0000147 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000024 ! Carnegie stage 17 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: has_stage_marker GO:0001503 property_value: IAO:0000589 "Carnegie stage 18 (human)" xsd:string property_value: start_dpf "44.0" xsd:float @@ -9388,8 +9376,8 @@ xref: FMA:295922 xref: XUO:0000148 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000025 ! Carnegie stage 18 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: IAO:0000589 "Carnegie stage 19 (human)" xsd:string property_value: start_dpf "48.0" xsd:float @@ -9406,8 +9394,8 @@ xref: FMA:295923 xref: XUO:0000149 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000026 ! Carnegie stage 19 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: IAO:0000589 "Carnegie stage 20 (human)" xsd:string property_value: start_dpf "51.0" xsd:float @@ -9423,8 +9411,8 @@ xref: FMA:295924 xref: XUO:0000150 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000027 ! Carnegie stage 20 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: IAO:0000589 "Carnegie stage 21 (human)" xsd:string property_value: start_dpf "53.0" xsd:float @@ -9440,8 +9428,8 @@ xref: FMA:295925 xref: XUO:0000151 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000028 ! Carnegie stage 21 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: has_stage_marker EHDAA2:0000462 property_value: has_stage_marker UBERON:0001711 property_value: IAO:0000589 "Carnegie stage 22 (human)" xsd:string @@ -9460,8 +9448,8 @@ xref: FMA:63631 xref: XUO:0000152 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000029 ! Carnegie stage 22 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: IAO:0000589 "Carnegie stage 23 (human)" xsd:string property_value: start_dpf "56.0" xsd:float @@ -9477,8 +9465,8 @@ xref: FMA:296707 xref: XUO:0000187 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000009 ! Carnegie stage 05 (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000009 ! Carnegie stage 05 (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: IAO:0000589 "Carnegie stage 05a (human)" xsd:string [Term] @@ -9493,8 +9481,8 @@ xref: FMA:296709 xref: XUO:0000188 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000031 ! Carnegie stage 05a (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000009 ! Carnegie stage 05 (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: has_stage_marker EHDAA2:0004715 property_value: IAO:0000589 "Carnegie stage 05b (human)" xsd:string @@ -9510,8 +9498,8 @@ xref: FMA:296711 xref: XUO:0000189 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000032 ! Carnegie stage 05b (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000009 ! Carnegie stage 05 (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: IAO:0000589 "Carnegie stage 05c (human)" xsd:string [Term] @@ -9526,8 +9514,8 @@ xref: XUO:0000190 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000009 ! Carnegie stage 05 (human) relationship: immediately_preceded_by HsapDv:0000033 ! Carnegie stage 05c (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000011 ! Carnegie stage 06 (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: has_stage_marker EHDAA2:0004717 property_value: IAO:0000589 "Carnegie stage 06a (human)" xsd:string @@ -9542,8 +9530,8 @@ xref: EHDAA2:CS06b xref: XUO:0000191 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000034 ! Carnegie stage 06a (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000011 ! Carnegie stage 06 (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: has_stage_marker EHDAA2:0001525 property_value: IAO:0000589 "Carnegie stage 06b (human)" xsd:string @@ -9557,8 +9545,8 @@ subset: granular_stage subset: life_stage xref: EV:0300012 is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000197 ! third LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "63.0" xsd:float property_value: IAO:0000589 "9th week post-fertilization stage (human)" xsd:string property_value: start_dpf "56.0" xsd:float @@ -9574,8 +9562,8 @@ subset: life_stage xref: EV:0300013 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000046 ! 9th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000197 ! third LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "70.0" xsd:float property_value: IAO:0000589 "10th week post-fertilization stage (human)" xsd:string property_value: start_dpf "63.0" xsd:float @@ -9591,8 +9579,8 @@ subset: life_stage xref: EV:0300030 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000047 ! 10th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000197 ! third LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "77.0" xsd:float property_value: has_stage_marker UBERON:0001833 property_value: has_stage_marker UBERON:0007827 @@ -9610,8 +9598,8 @@ subset: life_stage xref: EV:0300014 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000048 ! 11th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000198 ! fourth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "84.0" xsd:float property_value: IAO:0000589 "12th week post-fertilization stage (human)" xsd:string property_value: start_dpf "77.0" xsd:float @@ -9626,8 +9614,8 @@ subset: life_stage xref: EV:0300015 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000049 ! 12th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000198 ! fourth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "91.0" xsd:float property_value: IAO:0000589 "13th week post-fertilization stage (human)" xsd:string property_value: start_dpf "84.0" xsd:float @@ -9642,8 +9630,8 @@ subset: life_stage xref: EV:0300016 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000050 ! 13th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000198 ! fourth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "98.0" xsd:float property_value: IAO:0000589 "14th week post-fertilization stage (human)" xsd:string property_value: start_dpf "91.0" xsd:float @@ -9658,8 +9646,8 @@ subset: life_stage xref: EV:0300031 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000051 ! 14th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000198 ! fourth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "105.0" xsd:float property_value: IAO:0000589 "15th week post-fertilization stage (human)" xsd:string property_value: start_dpf "98.0" xsd:float @@ -9675,8 +9663,8 @@ subset: life_stage xref: EV:0300017 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000052 ! 15th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000199 ! fifth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "112.0" xsd:float property_value: IAO:0000589 "16th week post-fertilization stage (human)" xsd:string property_value: start_dpf "105.0" xsd:float @@ -9691,8 +9679,8 @@ subset: life_stage xref: EV:0300018 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000053 ! 16th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000199 ! fifth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "119.0" xsd:float property_value: IAO:0000589 "17th week post-fertilization stage (human)" xsd:string property_value: start_dpf "112.0" xsd:float @@ -9707,8 +9695,8 @@ subset: life_stage xref: EV:0300019 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000054 ! 17th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000199 ! fifth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "126.0" xsd:float property_value: IAO:0000589 "18th week post-fertilization stage (human)" xsd:string property_value: start_dpf "119.0" xsd:float @@ -9723,8 +9711,8 @@ subset: life_stage xref: EV:0300020 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000055 ! 18th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000199 ! fifth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "133.0" xsd:float property_value: IAO:0000589 "19th week post-fertilization stage (human)" xsd:string property_value: start_dpf "126.0" xsd:float @@ -9740,8 +9728,8 @@ subset: life_stage xref: EV:0300021 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000056 ! 19th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000200 ! sixth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "140.0" xsd:float property_value: IAO:0000589 "20th week post-fertilization stage (human)" xsd:string property_value: start_dpf "133.0" xsd:float @@ -9757,8 +9745,8 @@ subset: life_stage xref: EV:0300029 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000057 ! 20th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000200 ! sixth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "147.0" xsd:float property_value: IAO:0000589 "21st week post-fertilization stage (human)" xsd:string property_value: start_dpf "140.0" xsd:float @@ -9773,8 +9761,8 @@ subset: life_stage xref: EV:0300022 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000058 ! 21st week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000200 ! sixth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "154.0" xsd:float property_value: IAO:0000589 "22nd week post-fertilization stage (human)" xsd:string property_value: start_dpf "147.0" xsd:float @@ -9789,8 +9777,8 @@ subset: life_stage xref: EV:0300023 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000059 ! 22nd week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000200 ! sixth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "161.0" xsd:float property_value: IAO:0000589 "23rd week post-fertilization stage (human)" xsd:string property_value: start_dpf "154.0" xsd:float @@ -9806,8 +9794,8 @@ subset: life_stage xref: EV:0300024 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000060 ! 23rd week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000200 ! sixth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "168.0" xsd:float property_value: IAO:0000589 "24th week post-fertilization stage (human)" xsd:string property_value: start_dpf "161.0" xsd:float @@ -9823,8 +9811,8 @@ subset: life_stage xref: EV:0300032 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000061 ! 24th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000201 ! seventh LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "175.0" xsd:float property_value: IAO:0000589 "25th week post-fertilization stage (human)" xsd:string property_value: start_dpf "168.0" xsd:float @@ -9839,8 +9827,8 @@ subset: life_stage xref: EV:0300025 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000062 ! 25th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000201 ! seventh LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "182.0" xsd:float property_value: IAO:0000589 "26th week post-fertilization stage (human)" xsd:string property_value: start_dpf "175.0" xsd:float @@ -9855,8 +9843,8 @@ subset: life_stage xref: EV:0300033 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000063 ! 26th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000201 ! seventh LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "189.0" xsd:float property_value: IAO:0000589 "27th week post-fertilization stage (human)" xsd:string property_value: start_dpf "182.0" xsd:float @@ -9871,8 +9859,8 @@ subset: life_stage xref: EV:0300026 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000064 ! 27th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000201 ! seventh LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "196.0" xsd:float property_value: IAO:0000589 "28th week post-fertilization stage (human)" xsd:string property_value: start_dpf "189.0" xsd:float @@ -9888,8 +9876,8 @@ subset: life_stage xref: EV:0300034 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000065 ! 28th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000202 ! eighth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "203.0" xsd:float property_value: IAO:0000589 "29th week post-fertilization stage (human)" xsd:string property_value: start_dpf "196.0" xsd:float @@ -9904,8 +9892,8 @@ subset: life_stage xref: EV:0300035 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000066 ! 29th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000202 ! eighth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "210.0" xsd:float property_value: IAO:0000589 "30th week post-fertilization stage (human)" xsd:string property_value: start_dpf "203.0" xsd:float @@ -9920,8 +9908,8 @@ subset: life_stage xref: EV:0300036 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000067 ! 30th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000202 ! eighth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "217.0" xsd:float property_value: IAO:0000589 "31st week post-fertilization stage (human)" xsd:string property_value: start_dpf "210.0" xsd:float @@ -9936,8 +9924,8 @@ subset: life_stage xref: EV:0300027 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000068 ! 31st week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000202 ! eighth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "224.0" xsd:float property_value: IAO:0000589 "32nd week post-fertilization stage (human)" xsd:string property_value: start_dpf "217.0" xsd:float @@ -9952,8 +9940,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000069 ! 32nd week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000202 ! eighth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "231.0" xsd:float property_value: IAO:0000589 "33rd week post-fertilization stage (human)" xsd:string property_value: start_dpf "224.0" xsd:float @@ -9967,8 +9955,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000070 ! 33rd week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000203 ! ninth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "238.0" xsd:float property_value: IAO:0000589 "34th week post-fertilization stage (human)" xsd:string property_value: start_dpf "231.0" xsd:float @@ -9982,8 +9970,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000071 ! 34th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000203 ! ninth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "245.0" xsd:float property_value: IAO:0000589 "35th week post-fertilization stage (human)" xsd:string property_value: start_dpf "238.0" xsd:float @@ -9997,8 +9985,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000072 ! 35th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000203 ! ninth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "252.0" xsd:float property_value: IAO:0000589 "36th week post-fertilization stage (human)" xsd:string property_value: start_dpf "245.0" xsd:float @@ -10012,8 +10000,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000073 ! 36th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000203 ! ninth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "259.0" xsd:float property_value: IAO:0000589 "37th week post-fertilization stage (human)" xsd:string property_value: start_dpf "252.0" xsd:float @@ -10027,8 +10015,8 @@ comment: The assignation of this week to the ninth or tenth LMP month is debatab subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000074 ! 37th week post-fertilization stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000203 ! ninth LMP month stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "266.0" xsd:float property_value: IAO:0000589 "38th week post-fertilization and over stage (human)" xsd:string property_value: start_dpf "259.0" xsd:float @@ -10042,8 +10030,8 @@ subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000173 ! 79-year-old stage (human) relationship: immediately_preceded_by HsapDv:0000272 ! 60-79 year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0007222 ! late adult stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: IAO:0000589 "80 year-old and over stage (human)" xsd:string property_value: start_ypb "80.0" xsd:float @@ -10056,8 +10044,8 @@ subset: granular_stage subset: life_stage xref: EV:0300053 is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000270 ! 2-4 year-old child stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "3.0" xsd:float property_value: IAO:0000589 "2-year-old stage (human)" xsd:string property_value: start_ypb "2.0" xsd:float @@ -10072,8 +10060,8 @@ subset: life_stage xref: EV:0300054 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000096 ! 2-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000270 ! 2-4 year-old child stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "4.0" xsd:float property_value: IAO:0000589 "3-year-old stage (human)" xsd:string property_value: start_ypb "3.0" xsd:float @@ -10088,8 +10076,8 @@ subset: life_stage xref: EV:0300055 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000097 ! 3-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000270 ! 2-4 year-old child stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "5.0" xsd:float property_value: IAO:0000589 "4-year-old stage (human)" xsd:string property_value: start_ypb "4.0" xsd:float @@ -10104,8 +10092,8 @@ subset: life_stage xref: EV:0300056 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000098 ! 4-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "6.0" xsd:float property_value: IAO:0000589 "5-year-old stage (human)" xsd:string property_value: start_ypb "5.0" xsd:float @@ -10120,8 +10108,8 @@ subset: life_stage xref: EV:0300057 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000099 ! 5-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "7.0" xsd:float property_value: IAO:0000589 "6-year-old stage (human)" xsd:string property_value: start_ypb "6.0" xsd:float @@ -10136,8 +10124,8 @@ subset: life_stage xref: EV:0300058 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000100 ! 6-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "8.0" xsd:float property_value: IAO:0000589 "7-year-old stage (human)" xsd:string property_value: start_ypb "7.0" xsd:float @@ -10152,8 +10140,8 @@ subset: life_stage xref: EV:0300059 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000101 ! 7-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "9.0" xsd:float property_value: IAO:0000589 "8-year-old stage (human)" xsd:string property_value: start_ypb "8.0" xsd:float @@ -10168,8 +10156,8 @@ subset: life_stage xref: EV:0300060 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000102 ! 8-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "10.0" xsd:float property_value: IAO:0000589 "9-year-old stage (human)" xsd:string property_value: start_ypb "9.0" xsd:float @@ -10184,8 +10172,8 @@ subset: life_stage xref: EV:0300061 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000103 ! 9-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "11.0" xsd:float property_value: IAO:0000589 "10-year-old stage (human)" xsd:string property_value: start_ypb "10.0" xsd:float @@ -10200,8 +10188,8 @@ subset: life_stage xref: EV:0300062 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000104 ! 10-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "12.0" xsd:float property_value: IAO:0000589 "11-year-old stage (human)" xsd:string property_value: start_ypb "11.0" xsd:float @@ -10216,8 +10204,8 @@ subset: life_stage xref: EV:0300063 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000105 ! 11-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "13.0" xsd:float property_value: IAO:0000589 "12-year-old stage (human)" xsd:string property_value: start_ypb "12.0" xsd:float @@ -10232,8 +10220,8 @@ subset: life_stage xref: EV:0300065 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000106 ! 12-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "14.0" xsd:float property_value: IAO:0000589 "13-year-old stage (human)" xsd:string property_value: start_ypb "13.0" xsd:float @@ -10248,8 +10236,8 @@ subset: life_stage xref: EV:0300066 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000107 ! 13-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "15.0" xsd:float property_value: IAO:0000589 "14-year-old stage (human)" xsd:string property_value: start_ypb "14.0" xsd:float @@ -10264,8 +10252,8 @@ subset: life_stage xref: EV:0300067 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000108 ! 14-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000268 ! 15-19 year-old (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "16.0" xsd:float property_value: IAO:0000589 "15-year-old stage (human)" xsd:string property_value: start_ypb "15.0" xsd:float @@ -10280,8 +10268,8 @@ subset: life_stage xref: EV:0300068 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000109 ! 15-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000268 ! 15-19 year-old (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "17.0" xsd:float property_value: IAO:0000589 "16-year-old stage (human)" xsd:string property_value: start_ypb "16.0" xsd:float @@ -10296,8 +10284,8 @@ subset: life_stage xref: EV:0300069 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000110 ! 16-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000268 ! 15-19 year-old (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "18.0" xsd:float property_value: IAO:0000589 "17-year-old stage (human)" xsd:string property_value: start_ypb "17.0" xsd:float @@ -10312,8 +10300,8 @@ subset: life_stage xref: EV:0300071 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000111 ! 17-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000268 ! 15-19 year-old (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "19.0" xsd:float property_value: IAO:0000589 "18-year-old stage (human)" xsd:string property_value: start_ypb "18.0" xsd:float @@ -10328,8 +10316,8 @@ subset: life_stage xref: EV:0300072 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000112 ! 18-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000268 ! 15-19 year-old (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "20.0" xsd:float property_value: IAO:0000589 "19-year-old stage (human)" xsd:string property_value: start_ypb "19.0" xsd:float @@ -10344,8 +10332,8 @@ subset: life_stage xref: EV:0300073 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000113 ! 19-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000237 ! third decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "21.0" xsd:float property_value: IAO:0000589 "20-year-old stage (human)" xsd:string property_value: start_ypb "20.0" xsd:float @@ -10360,8 +10348,8 @@ subset: life_stage xref: EV:0300074 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000114 ! 20-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000237 ! third decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "22.0" xsd:float property_value: IAO:0000589 "21-year-old stage (human)" xsd:string property_value: start_ypb "21.0" xsd:float @@ -10376,8 +10364,8 @@ subset: life_stage xref: EV:0300075 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000115 ! 21-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000237 ! third decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "23.0" xsd:float property_value: IAO:0000589 "22-year-old stage (human)" xsd:string property_value: start_ypb "22.0" xsd:float @@ -10392,8 +10380,8 @@ subset: life_stage xref: EV:0300076 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000116 ! 22-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000237 ! third decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "24.0" xsd:float property_value: IAO:0000589 "23-year-old stage (human)" xsd:string property_value: start_ypb "23.0" xsd:float @@ -10408,8 +10396,8 @@ subset: life_stage xref: EV:0300077 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000117 ! 23-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000237 ! third decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "25.0" xsd:float property_value: IAO:0000589 "24-year-old stage (human)" xsd:string property_value: start_ypb "24.0" xsd:float @@ -10424,8 +10412,8 @@ subset: life_stage xref: EV:0300078 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000118 ! 24-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000237 ! third decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "26.0" xsd:float property_value: IAO:0000589 "25-year-old stage (human)" xsd:string property_value: start_ypb "25.0" xsd:float @@ -10440,8 +10428,8 @@ subset: life_stage xref: EV:0300079 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000119 ! 25-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000237 ! third decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "27.0" xsd:float property_value: IAO:0000589 "26-year-old stage (human)" xsd:string property_value: start_ypb "26.0" xsd:float @@ -10456,8 +10444,8 @@ subset: life_stage xref: EV:0300080 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000120 ! 26-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000237 ! third decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "28.0" xsd:float property_value: IAO:0000589 "27-year-old stage (human)" xsd:string property_value: start_ypb "27.0" xsd:float @@ -10472,8 +10460,8 @@ subset: life_stage xref: EV:0300081 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000121 ! 27-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000237 ! third decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "29.0" xsd:float property_value: IAO:0000589 "28-year-old stage (human)" xsd:string property_value: start_ypb "28.0" xsd:float @@ -10488,8 +10476,8 @@ subset: life_stage xref: EV:0300082 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000122 ! 28-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000237 ! third decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "30.0" xsd:float property_value: IAO:0000589 "29-year-old stage (human)" xsd:string property_value: start_ypb "29.0" xsd:float @@ -10504,8 +10492,8 @@ subset: life_stage xref: EV:0300083 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000123 ! 29-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000238 ! fourth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "31.0" xsd:float property_value: IAO:0000589 "30-year-old stage (human)" xsd:string property_value: start_ypb "30.0" xsd:float @@ -10520,8 +10508,8 @@ subset: life_stage xref: EV:0300084 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000124 ! 30-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000238 ! fourth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "32.0" xsd:float property_value: IAO:0000589 "31-year-old stage (human)" xsd:string property_value: start_ypb "31.0" xsd:float @@ -10536,8 +10524,8 @@ subset: life_stage xref: EV:0300085 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000125 ! 31-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000238 ! fourth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "33.0" xsd:float property_value: IAO:0000589 "32-year-old stage (human)" xsd:string property_value: start_ypb "32.0" xsd:float @@ -10552,8 +10540,8 @@ subset: life_stage xref: EV:0300086 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000126 ! 32-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000238 ! fourth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "34.0" xsd:float property_value: IAO:0000589 "33-year-old stage (human)" xsd:string property_value: start_ypb "33.0" xsd:float @@ -10568,8 +10556,8 @@ subset: life_stage xref: EV:0300087 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000127 ! 33-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000238 ! fourth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "35.0" xsd:float property_value: IAO:0000589 "34-year-old stage (human)" xsd:string property_value: start_ypb "34.0" xsd:float @@ -10584,8 +10572,8 @@ subset: life_stage xref: EV:0300088 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000128 ! 34-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000238 ! fourth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "36.0" xsd:float property_value: IAO:0000589 "35-year-old stage (human)" xsd:string property_value: start_ypb "35.0" xsd:float @@ -10600,8 +10588,8 @@ subset: life_stage xref: EV:0300089 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000129 ! 35-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000238 ! fourth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "37.0" xsd:float property_value: IAO:0000589 "36-year-old stage (human)" xsd:string property_value: start_ypb "36.0" xsd:float @@ -10616,8 +10604,8 @@ subset: life_stage xref: EV:0300090 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000130 ! 36-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000238 ! fourth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "38.0" xsd:float property_value: IAO:0000589 "37-year-old stage (human)" xsd:string property_value: start_ypb "37.0" xsd:float @@ -10632,8 +10620,8 @@ subset: life_stage xref: EV:0300091 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000131 ! 37-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000238 ! fourth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "39.0" xsd:float property_value: IAO:0000589 "38-year-old stage (human)" xsd:string property_value: start_ypb "38.0" xsd:float @@ -10648,8 +10636,8 @@ subset: life_stage xref: EV:0300092 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000132 ! 38-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000238 ! fourth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "40.0" xsd:float property_value: IAO:0000589 "39-year-old stage (human)" xsd:string property_value: start_ypb "39.0" xsd:float @@ -10664,8 +10652,8 @@ subset: life_stage xref: EV:0300093 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000133 ! 39-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000239 ! fifth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "41.0" xsd:float property_value: IAO:0000589 "40-year-old stage (human)" xsd:string property_value: start_ypb "40.0" xsd:float @@ -10680,8 +10668,8 @@ subset: life_stage xref: EV:0300094 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000134 ! 40-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000239 ! fifth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "42.0" xsd:float property_value: IAO:0000589 "41-year-old stage (human)" xsd:string property_value: start_ypb "41.0" xsd:float @@ -10696,8 +10684,8 @@ subset: life_stage xref: EV:0300095 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000135 ! 41-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000239 ! fifth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "43.0" xsd:float property_value: IAO:0000589 "42-year-old stage (human)" xsd:string property_value: start_ypb "42.0" xsd:float @@ -10712,8 +10700,8 @@ subset: life_stage xref: EV:0300096 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000136 ! 42-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000239 ! fifth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "44.0" xsd:float property_value: IAO:0000589 "43-year-old stage (human)" xsd:string property_value: start_ypb "43.0" xsd:float @@ -10728,8 +10716,8 @@ subset: life_stage xref: EV:0300097 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000137 ! 43-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000239 ! fifth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "45.0" xsd:float property_value: IAO:0000589 "44-year-old stage (human)" xsd:string property_value: start_ypb "44.0" xsd:float @@ -10744,8 +10732,8 @@ subset: life_stage xref: EV:0300098 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000138 ! 44-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000239 ! fifth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "46.0" xsd:float property_value: IAO:0000589 "45-year-old stage (human)" xsd:string property_value: start_ypb "45.0" xsd:float @@ -10760,8 +10748,8 @@ subset: life_stage xref: EV:0300099 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000139 ! 45-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000239 ! fifth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "47.0" xsd:float property_value: IAO:0000589 "46-year-old stage (human)" xsd:string property_value: start_ypb "46.0" xsd:float @@ -10776,8 +10764,8 @@ subset: life_stage xref: EV:0300100 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000140 ! 46-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000239 ! fifth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "48.0" xsd:float property_value: IAO:0000589 "47-year-old stage (human)" xsd:string property_value: start_ypb "47.0" xsd:float @@ -10792,8 +10780,8 @@ subset: life_stage xref: EV:0300101 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000141 ! 47-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000239 ! fifth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "49.0" xsd:float property_value: IAO:0000589 "48-year-old stage (human)" xsd:string property_value: start_ypb "48.0" xsd:float @@ -10808,8 +10796,8 @@ subset: life_stage xref: EV:0300102 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000142 ! 48-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000239 ! fifth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "50.0" xsd:float property_value: IAO:0000589 "49-year-old stage (human)" xsd:string property_value: start_ypb "49.0" xsd:float @@ -10824,8 +10812,8 @@ subset: life_stage xref: EV:0300103 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000143 ! 49-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000240 ! sixth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "51.0" xsd:float property_value: IAO:0000589 "50-year-old stage (human)" xsd:string property_value: start_ypb "50.0" xsd:float @@ -10840,8 +10828,8 @@ subset: life_stage xref: EV:0300104 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000144 ! 50-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000240 ! sixth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "52.0" xsd:float property_value: IAO:0000589 "51-year-old stage (human)" xsd:string property_value: start_ypb "51.0" xsd:float @@ -10856,8 +10844,8 @@ subset: life_stage xref: EV:0300105 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000145 ! 51-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000240 ! sixth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "53.0" xsd:float property_value: IAO:0000589 "52-year-old stage (human)" xsd:string property_value: start_ypb "52.0" xsd:float @@ -10872,8 +10860,8 @@ subset: life_stage xref: EV:0300106 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000146 ! 52-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000240 ! sixth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "54.0" xsd:float property_value: IAO:0000589 "53-year-old stage (human)" xsd:string property_value: start_ypb "53.0" xsd:float @@ -10888,8 +10876,8 @@ subset: life_stage xref: EV:0300107 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000147 ! 53-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000240 ! sixth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "55.0" xsd:float property_value: IAO:0000589 "54-year-old stage (human)" xsd:string property_value: start_ypb "54.0" xsd:float @@ -10904,8 +10892,8 @@ subset: life_stage xref: EV:0300108 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000148 ! 54-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000240 ! sixth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "56.0" xsd:float property_value: IAO:0000589 "55-year-old stage (human)" xsd:string property_value: start_ypb "55.0" xsd:float @@ -10920,8 +10908,8 @@ subset: life_stage xref: EV:0300109 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000149 ! 55-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000240 ! sixth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "57.0" xsd:float property_value: IAO:0000589 "56-year-old stage (human)" xsd:string property_value: start_ypb "56.0" xsd:float @@ -10936,8 +10924,8 @@ subset: life_stage xref: EV:0300110 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000150 ! 56-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000240 ! sixth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "58.0" xsd:float property_value: IAO:0000589 "57-year-old stage (human)" xsd:string property_value: start_ypb "57.0" xsd:float @@ -10952,8 +10940,8 @@ subset: life_stage xref: EV:0300111 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000151 ! 57-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000240 ! sixth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "59.0" xsd:float property_value: IAO:0000589 "58-year-old stage (human)" xsd:string property_value: start_ypb "58.0" xsd:float @@ -10968,8 +10956,8 @@ subset: life_stage xref: EV:0300112 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000152 ! 58-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000240 ! sixth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "60.0" xsd:float property_value: IAO:0000589 "59-year-old stage (human)" xsd:string property_value: start_ypb "59.0" xsd:float @@ -10984,8 +10972,8 @@ subset: life_stage xref: EV:0300113 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000153 ! 59-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000241 ! seventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "61.0" xsd:float property_value: IAO:0000589 "60-year-old stage (human)" xsd:string property_value: start_ypb "60.0" xsd:float @@ -11000,8 +10988,8 @@ subset: life_stage xref: EV:0300114 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000154 ! 60-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000241 ! seventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "62.0" xsd:float property_value: IAO:0000589 "61-year-old stage (human)" xsd:string property_value: start_ypb "61.0" xsd:float @@ -11016,8 +11004,8 @@ subset: life_stage xref: EV:0300115 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000155 ! 61-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000241 ! seventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "63.0" xsd:float property_value: IAO:0000589 "62-year-old stage (human)" xsd:string property_value: start_ypb "62.0" xsd:float @@ -11032,8 +11020,8 @@ subset: life_stage xref: EV:0300116 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000156 ! 62-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000241 ! seventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "64.0" xsd:float property_value: IAO:0000589 "63-year-old stage (human)" xsd:string property_value: start_ypb "63.0" xsd:float @@ -11048,8 +11036,8 @@ subset: life_stage xref: EV:0300117 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000157 ! 63-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000241 ! seventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "65.0" xsd:float property_value: IAO:0000589 "64-year-old stage (human)" xsd:string property_value: start_ypb "64.0" xsd:float @@ -11064,8 +11052,8 @@ subset: life_stage xref: EV:0300118 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000158 ! 64-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000241 ! seventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "66.0" xsd:float property_value: IAO:0000589 "65-year-old stage (human)" xsd:string property_value: start_ypb "65.0" xsd:float @@ -11080,8 +11068,8 @@ subset: life_stage xref: EV:0300119 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000159 ! 65-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000241 ! seventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "67.0" xsd:float property_value: IAO:0000589 "66-year-old stage (human)" xsd:string property_value: start_ypb "66.0" xsd:float @@ -11096,8 +11084,8 @@ subset: life_stage xref: EV:0300120 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000160 ! 66-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000241 ! seventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "68.0" xsd:float property_value: IAO:0000589 "67-year-old stage (human)" xsd:string property_value: start_ypb "67.0" xsd:float @@ -11112,8 +11100,8 @@ subset: life_stage xref: EV:0300121 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000161 ! 67-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000241 ! seventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "69.0" xsd:float property_value: IAO:0000589 "68-year-old stage (human)" xsd:string property_value: start_ypb "68.0" xsd:float @@ -11128,8 +11116,8 @@ subset: life_stage xref: EV:0300122 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000162 ! 68-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000241 ! seventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "70.0" xsd:float property_value: IAO:0000589 "69-year-old stage (human)" xsd:string property_value: start_ypb "69.0" xsd:float @@ -11144,8 +11132,8 @@ subset: life_stage xref: EV:0300124 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000163 ! 69-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000242 ! eighth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "71.0" xsd:float property_value: IAO:0000589 "70-year-old stage (human)" xsd:string property_value: start_ypb "70.0" xsd:float @@ -11160,8 +11148,8 @@ subset: life_stage xref: EV:0300125 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000164 ! 70-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000242 ! eighth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "72.0" xsd:float property_value: IAO:0000589 "71-year-old stage (human)" xsd:string property_value: start_ypb "71.0" xsd:float @@ -11176,8 +11164,8 @@ subset: life_stage xref: EV:0300126 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000165 ! 71-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000242 ! eighth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "73.0" xsd:float property_value: IAO:0000589 "72-year-old stage (human)" xsd:string property_value: start_ypb "72.0" xsd:float @@ -11192,8 +11180,8 @@ subset: life_stage xref: EV:0300127 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000166 ! 72-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000242 ! eighth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "74.0" xsd:float property_value: IAO:0000589 "73-year-old stage (human)" xsd:string property_value: start_ypb "73.0" xsd:float @@ -11208,8 +11196,8 @@ subset: life_stage xref: EV:0300128 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000167 ! 73-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000242 ! eighth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "75.0" xsd:float property_value: IAO:0000589 "74-year-old stage (human)" xsd:string property_value: start_ypb "74.0" xsd:float @@ -11224,8 +11212,8 @@ subset: life_stage xref: EV:0300129 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000168 ! 74-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000242 ! eighth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "76.0" xsd:float property_value: IAO:0000589 "75-year-old stage (human)" xsd:string property_value: start_ypb "75.0" xsd:float @@ -11240,8 +11228,8 @@ subset: life_stage xref: EV:0300130 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000169 ! 75-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000242 ! eighth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "77.0" xsd:float property_value: IAO:0000589 "76-year-old stage (human)" xsd:string property_value: start_ypb "76.0" xsd:float @@ -11256,8 +11244,8 @@ subset: life_stage xref: EV:0300131 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000170 ! 76-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000242 ! eighth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "78.0" xsd:float property_value: IAO:0000589 "77-year-old stage (human)" xsd:string property_value: start_ypb "77.0" xsd:float @@ -11272,8 +11260,8 @@ subset: life_stage xref: EV:0300132 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000171 ! 77-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000242 ! eighth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "79.0" xsd:float property_value: IAO:0000589 "78-year-old stage (human)" xsd:string property_value: start_ypb "78.0" xsd:float @@ -11288,8 +11276,8 @@ subset: life_stage xref: EV:0300133 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000172 ! 78-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000242 ! eighth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "80.0" xsd:float property_value: IAO:0000589 "79-year-old stage (human)" xsd:string property_value: start_ypb "79.0" xsd:float @@ -11304,8 +11292,8 @@ subset: life_stage xref: EV:0300040 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000273 ! 1-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "3.0" xsd:float property_value: IAO:0000589 "2-month-old stage (human)" xsd:string property_value: start_mpb "2.0" xsd:float @@ -11320,8 +11308,8 @@ subset: life_stage xref: EV:0300041 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000175 ! 2-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "4.0" xsd:float property_value: IAO:0000589 "3-month-old stage (human)" xsd:string property_value: start_mpb "3.0" xsd:float @@ -11336,8 +11324,8 @@ subset: life_stage xref: EV:0300042 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000176 ! 3-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "5.0" xsd:float property_value: IAO:0000589 "4-month-old stage (human)" xsd:string property_value: start_mpb "4.0" xsd:float @@ -11352,8 +11340,8 @@ subset: life_stage xref: EV:0300043 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000177 ! 4-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "6.0" xsd:float property_value: IAO:0000589 "5-month-old stage (human)" xsd:string property_value: start_mpb "5.0" xsd:float @@ -11368,8 +11356,8 @@ subset: life_stage xref: EV:0300044 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000178 ! 5-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "7.0" xsd:float property_value: IAO:0000589 "6-month-old stage (human)" xsd:string property_value: start_mpb "6.0" xsd:float @@ -11384,8 +11372,8 @@ subset: life_stage xref: EV:0300045 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000179 ! 6-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "8.0" xsd:float property_value: IAO:0000589 "7-month-old stage (human)" xsd:string property_value: start_mpb "7.0" xsd:float @@ -11400,8 +11388,8 @@ subset: life_stage xref: EV:0300046 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000180 ! 7-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "9.0" xsd:float property_value: IAO:0000589 "8-month-old stage (human)" xsd:string property_value: start_mpb "8.0" xsd:float @@ -11416,8 +11404,8 @@ subset: life_stage xref: EV:0300047 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000181 ! 8-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "10.0" xsd:float property_value: IAO:0000589 "9-month-old stage (human)" xsd:string property_value: start_mpb "9.0" xsd:float @@ -11432,8 +11420,8 @@ subset: life_stage xref: EV:0300048 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000182 ! 9-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "11.0" xsd:float property_value: IAO:0000589 "10-month-old stage (human)" xsd:string property_value: start_mpb "10.0" xsd:float @@ -11448,8 +11436,8 @@ subset: life_stage xref: EV:0300049 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000183 ! 10-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "12.0" xsd:float property_value: IAO:0000589 "11-month-old stage (human)" xsd:string property_value: start_mpb "11.0" xsd:float @@ -11463,8 +11451,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000184 ! 11-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000246 ! 1-year-old stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "13.0" xsd:float property_value: IAO:0000589 "12-month-old stage (human)" xsd:string property_value: start_mpb "12.0" xsd:float @@ -11478,8 +11466,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000185 ! 12-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000246 ! 1-year-old stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "14.0" xsd:float property_value: IAO:0000589 "13-month-old stage (human)" xsd:string property_value: start_mpb "13.0" xsd:float @@ -11493,8 +11481,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000186 ! 13-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000246 ! 1-year-old stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "15.0" xsd:float property_value: IAO:0000589 "14-month-old stage (human)" xsd:string property_value: start_mpb "14.0" xsd:float @@ -11508,8 +11496,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000187 ! 14-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000246 ! 1-year-old stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "16.0" xsd:float property_value: IAO:0000589 "15-month-old stage (human)" xsd:string property_value: start_mpb "15.0" xsd:float @@ -11523,8 +11511,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000188 ! 15-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000246 ! 1-year-old stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "17.0" xsd:float property_value: IAO:0000589 "16-month-old stage (human)" xsd:string property_value: start_mpb "16.0" xsd:float @@ -11538,8 +11526,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000189 ! 16-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000246 ! 1-year-old stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "18.0" xsd:float property_value: IAO:0000589 "17-month-old stage (human)" xsd:string property_value: start_mpb "17.0" xsd:float @@ -11553,8 +11541,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000190 ! 17-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000246 ! 1-year-old stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "19.0" xsd:float property_value: IAO:0000589 "18-month-old stage (human)" xsd:string property_value: start_mpb "18.0" xsd:float @@ -11568,8 +11556,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000191 ! 18-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000246 ! 1-year-old stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "20.0" xsd:float property_value: IAO:0000589 "19-month-old stage (human)" xsd:string property_value: start_mpb "19.0" xsd:float @@ -11583,8 +11571,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000192 ! 19-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000246 ! 1-year-old stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "21.0" xsd:float property_value: IAO:0000589 "20-month-old stage (human)" xsd:string property_value: start_mpb "20.0" xsd:float @@ -11598,8 +11586,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000193 ! 20-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000246 ! 1-year-old stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "22.0" xsd:float property_value: IAO:0000589 "21-month-old stage (human)" xsd:string property_value: start_mpb "21.0" xsd:float @@ -11613,8 +11601,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000194 ! 21-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000246 ! 1-year-old stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "23.0" xsd:float property_value: IAO:0000589 "22-month-old stage (human)" xsd:string property_value: start_mpb "22.0" xsd:float @@ -11628,8 +11616,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000195 ! 22-month-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000246 ! 1-year-old stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "24.0" xsd:float property_value: end_ypb "2.0" xsd:float property_value: IAO:0000589 "23-month-old stage (human)" xsd:string @@ -11642,8 +11630,8 @@ namespace: human_developmental_stage def: "Fetal stage that refers to the third month of gestation starting from the last menstrual period (LMP)." [Bgee:curator] subset: life_stage is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0007220 ! late embryonic stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "77.0" xsd:float property_value: Gestational_age "3.0" xsd:float property_value: IAO:0000589 "third LMP month stage (human)" xsd:string @@ -11657,8 +11645,8 @@ def: "Fetal stage that refers to the fourth month of gestation starting from the subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000197 ! third LMP month stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0007220 ! late embryonic stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "105.0" xsd:float property_value: Gestational_age "4.0" xsd:float property_value: IAO:0000589 "fourth LMP month stage (human)" xsd:string @@ -11672,8 +11660,8 @@ def: "Fetal stage that refers to the fifth month of gestation starting from the subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000198 ! fourth LMP month stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0007220 ! late embryonic stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "133.0" xsd:float property_value: Gestational_age "5.0" xsd:float property_value: IAO:0000589 "fifth LMP month stage (human)" xsd:string @@ -11687,8 +11675,8 @@ def: "Fetal stage that refers to the sixth month of gestation starting from the subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000199 ! fifth LMP month stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0007220 ! late embryonic stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "168.0" xsd:float property_value: Gestational_age "6.0" xsd:float property_value: IAO:0000589 "sixth LMP month stage (human)" xsd:string @@ -11702,8 +11690,8 @@ def: "Fetal stage that refers to the seventh month of gestation starting from th subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000200 ! sixth LMP month stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0007220 ! late embryonic stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "196.0" xsd:float property_value: Gestational_age "7.0" xsd:float property_value: IAO:0000589 "seventh LMP month stage (human)" xsd:string @@ -11717,8 +11705,8 @@ def: "Fetal stage that refers to the eighth month of gestation starting from the subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000201 ! seventh LMP month stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0007220 ! late embryonic stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "231.0" xsd:float property_value: Gestational_age "8.0" xsd:float property_value: IAO:0000589 "eighth LMP month stage (human)" xsd:string @@ -11732,8 +11720,8 @@ def: "Fetal stage that refers to the ninth month of gestation starting from the subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000202 ! eighth LMP month stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0007220 ! late embryonic stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_dpf "266.0" xsd:float property_value: Gestational_age "9.0" xsd:float property_value: IAO:0000589 "ninth LMP month stage (human)" xsd:string @@ -11746,8 +11734,8 @@ namespace: human_developmental_stage def: "The morula stage is the later part of Carnegie stage 02 when the cells have coalesced into a mass but the blastocystic cavity has not formed. Formation of the cavity marks the beginning of Carnegie stage 03." [Bgee:curator] subset: life_stage is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000107 ! cleavage stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: IAO:0000589 "morula stage (human)" xsd:string [Term] @@ -11758,8 +11746,8 @@ def: "Aged stage that refers to an adult who is over 80 and under 81 years old." subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000243 ! ninth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "81.0" xsd:float property_value: IAO:0000589 "80-year-old stage (human)" xsd:string property_value: start_ypb "80.0" xsd:float @@ -11773,8 +11761,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000206 ! 80-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000243 ! ninth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "82.0" xsd:float property_value: IAO:0000589 "81-year-old stage (human)" xsd:string property_value: start_ypb "81.0" xsd:float @@ -11788,8 +11776,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000207 ! 81-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000243 ! ninth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "83.0" xsd:float property_value: IAO:0000589 "82-year-old stage (human)" xsd:string property_value: start_ypb "82.0" xsd:float @@ -11803,8 +11791,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000208 ! 82-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000243 ! ninth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "84.0" xsd:float property_value: IAO:0000589 "83-year-old stage (human)" xsd:string property_value: start_ypb "83.0" xsd:float @@ -11818,8 +11806,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000209 ! 83-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000243 ! ninth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "85.0" xsd:float property_value: IAO:0000589 "84-year-old stage (human)" xsd:string property_value: start_ypb "84.0" xsd:float @@ -11833,8 +11821,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000210 ! 84-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000243 ! ninth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "86.0" xsd:float property_value: IAO:0000589 "85-year-old stage (human)" xsd:string property_value: start_ypb "85.0" xsd:float @@ -11848,8 +11836,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000211 ! 85-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000243 ! ninth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "87.0" xsd:float property_value: IAO:0000589 "86-year-old stage (human)" xsd:string property_value: start_ypb "86.0" xsd:float @@ -11863,8 +11851,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000212 ! 86-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000243 ! ninth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "88.0" xsd:float property_value: IAO:0000589 "87-year-old stage (human)" xsd:string property_value: start_ypb "87.0" xsd:float @@ -11878,8 +11866,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000213 ! 87-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000243 ! ninth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "89.0" xsd:float property_value: IAO:0000589 "88-year-old stage (human)" xsd:string property_value: start_ypb "88.0" xsd:float @@ -11893,8 +11881,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000214 ! 88-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000243 ! ninth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "90.0" xsd:float property_value: IAO:0000589 "89-year-old stage (human)" xsd:string property_value: start_ypb "89.0" xsd:float @@ -11908,8 +11896,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000215 ! 89-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000244 ! tenth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "91.0" xsd:float property_value: IAO:0000589 "90-year-old stage (human)" xsd:string property_value: start_ypb "90.0" xsd:float @@ -11923,8 +11911,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000216 ! 90-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000244 ! tenth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "92.0" xsd:float property_value: IAO:0000589 "91-year-old stage (human)" xsd:string property_value: start_ypb "91.0" xsd:float @@ -11938,8 +11926,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000217 ! 91-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000244 ! tenth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "93.0" xsd:float property_value: IAO:0000589 "92-year-old stage (human)" xsd:string property_value: start_ypb "92.0" xsd:float @@ -11953,8 +11941,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000218 ! 92-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000244 ! tenth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "94.0" xsd:float property_value: IAO:0000589 "93-year-old stage (human)" xsd:string property_value: start_ypb "93.0" xsd:float @@ -11968,8 +11956,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000219 ! 93-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000244 ! tenth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "95.0" xsd:float property_value: IAO:0000589 "94-year-old stage (human)" xsd:string property_value: start_ypb "94.0" xsd:float @@ -11983,8 +11971,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000220 ! 94-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000244 ! tenth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "96.0" xsd:float property_value: IAO:0000589 "95-year-old stage (human)" xsd:string property_value: start_ypb "95.0" xsd:float @@ -11998,8 +11986,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000221 ! 95-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000244 ! tenth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "97.0" xsd:float property_value: IAO:0000589 "96-year-old stage (human)" xsd:string property_value: start_ypb "96.0" xsd:float @@ -12013,8 +12001,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000222 ! 96-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000244 ! tenth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "98.0" xsd:float property_value: IAO:0000589 "97-year-old stage (human)" xsd:string property_value: start_ypb "97.0" xsd:float @@ -12028,8 +12016,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000223 ! 97-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000244 ! tenth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "99.0" xsd:float property_value: IAO:0000589 "98-year-old stage (human)" xsd:string property_value: start_ypb "98.0" xsd:float @@ -12043,8 +12031,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000224 ! 98-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000244 ! tenth decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "100.0" xsd:float property_value: IAO:0000589 "99-year-old stage (human)" xsd:string property_value: start_ypb "99.0" xsd:float @@ -12058,8 +12046,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000225 ! 99-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000245 ! eleventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "101.0" xsd:float property_value: IAO:0000589 "100-year-old stage (human)" xsd:string property_value: start_ypb "100.0" xsd:float @@ -12073,8 +12061,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000228 ! 100-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000245 ! eleventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "102.0" xsd:float property_value: IAO:0000589 "101-year-old stage (human)" xsd:string property_value: start_ypb "101.0" xsd:float @@ -12088,8 +12076,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000229 ! 101-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000245 ! eleventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "103.0" xsd:float property_value: IAO:0000589 "102-year-old stage (human)" xsd:string property_value: start_ypb "102.0" xsd:float @@ -12103,8 +12091,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000230 ! 102-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000245 ! eleventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "104.0" xsd:float property_value: IAO:0000589 "103-year-old stage (human)" xsd:string property_value: start_ypb "103.0" xsd:float @@ -12118,8 +12106,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000231 ! 103-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000245 ! eleventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "105.0" xsd:float property_value: IAO:0000589 "104-year-old stage (human)" xsd:string property_value: start_ypb "104.0" xsd:float @@ -12133,8 +12121,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000232 ! 104-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000245 ! eleventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "106.0" xsd:float property_value: IAO:0000589 "105-year-old stage (human)" xsd:string property_value: start_ypb "105.0" xsd:float @@ -12148,8 +12136,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000233 ! 105-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000245 ! eleventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "107.0" xsd:float property_value: IAO:0000589 "106-year-old stage (human)" xsd:string property_value: start_ypb "106.0" xsd:float @@ -12162,8 +12150,8 @@ def: "Human stage that refers to an individual who is over 20 and under 30 years subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000268 ! 15-19 year-old (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000266 ! young adult stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "30.0" xsd:float property_value: IAO:0000589 "third decade stage (human)" xsd:string property_value: start_ypb "20.0" xsd:float @@ -12176,8 +12164,8 @@ def: "Human stage that refers to an individual who is over 30 and under 40 years subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000237 ! third decade stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000266 ! young adult stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "40.0" xsd:float property_value: IAO:0000589 "fourth decade stage (human)" xsd:string property_value: start_ypb "30.0" xsd:float @@ -12190,8 +12178,8 @@ def: "Human stage that refers to an individual who is over 40 and under 50 years subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000238 ! fourth decade stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000267 ! middle aged stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "50.0" xsd:float property_value: IAO:0000589 "fifth decade stage (human)" xsd:string property_value: start_ypb "40.0" xsd:float @@ -12204,8 +12192,8 @@ def: "Human stage that refers to an individual who is over 50 and under 60 years subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000239 ! fifth decade stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000267 ! middle aged stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "60.0" xsd:float property_value: IAO:0000589 "sixth decade stage (human)" xsd:string property_value: start_ypb "50.0" xsd:float @@ -12218,8 +12206,8 @@ def: "Human stage that refers to an individual who is over 60 and under 70 years subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000240 ! sixth decade stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000272 ! 60-79 year-old stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "70.0" xsd:float property_value: IAO:0000589 "seventh decade stage (human)" xsd:string property_value: start_ypb "60.0" xsd:float @@ -12232,8 +12220,8 @@ def: "Human stage that refers to an individual who is over 70 and under 80 years subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000241 ! seventh decade stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000272 ! 60-79 year-old stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "80.0" xsd:float property_value: IAO:0000589 "eighth decade stage (human)" xsd:string property_value: start_ypb "70.0" xsd:float @@ -12246,8 +12234,8 @@ def: "Human stage that refers to an individual who is over 80 and under 90 years subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000242 ! eighth decade stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000095 ! 80 year-old and over stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "90.0" xsd:float property_value: IAO:0000589 "ninth decade stage (human)" xsd:string property_value: start_ypb "80.0" xsd:float @@ -12260,8 +12248,8 @@ def: "Human stage that refers to an individual who is over 90 and under 100 year subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000243 ! ninth decade stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000095 ! 80 year-old and over stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "100.0" xsd:float property_value: IAO:0000589 "tenth decade stage (human)" xsd:string property_value: start_ypb "90.0" xsd:float @@ -12274,8 +12262,8 @@ def: "Human stage that refers to a human who is over 100 and under 110 years old subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000244 ! tenth decade stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000247 ! centenarian stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "110.0" xsd:float property_value: IAO:0000589 "eleventh decade stage (human)" xsd:string property_value: start_ypb "100.0" xsd:float @@ -12288,8 +12276,8 @@ def: "Child stage that refers to a child who is over 12 and under 24 months old. subset: life_stage synonym: "12-23 months" EXACT [] is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000265 ! child stage (1-4 yo) (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "24.0" xsd:float property_value: end_ypb "2.0" xsd:float property_value: IAO:0000589 "1-year-old stage (human)" xsd:string @@ -12306,8 +12294,8 @@ subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000225 ! 99-year-old stage (human) relationship: immediately_preceded_by HsapDv:0000244 ! tenth decade stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000095 ! 80 year-old and over stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "101.0" xsd:float property_value: IAO:0000589 "centenarian stage (human)" xsd:string property_value: start_ypb "100.0" xsd:float @@ -12321,8 +12309,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000234 ! 106-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000245 ! eleventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "108.0" xsd:float property_value: IAO:0000589 "107-year-old stage (human)" xsd:string property_value: start_ypb "107.0" xsd:float @@ -12336,8 +12324,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000248 ! 107-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000245 ! eleventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "109.0" xsd:float property_value: IAO:0000589 "108-year-old stage (human)" xsd:string property_value: start_ypb "108.0" xsd:float @@ -12351,8 +12339,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000249 ! 108-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000245 ! eleventh decade stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "110.0" xsd:float property_value: IAO:0000589 "109-year-old stage (human)" xsd:string property_value: start_ypb "109.0" xsd:float @@ -12366,8 +12354,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000250 ! 109-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000247 ! centenarian stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "111.0" xsd:float property_value: IAO:0000589 "110-year-old stage (human)" xsd:string property_value: start_ypb "110.0" xsd:float @@ -12381,8 +12369,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000251 ! 110-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000247 ! centenarian stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "112.0" xsd:float property_value: IAO:0000589 "111-year-old stage (human)" xsd:string property_value: start_ypb "111.0" xsd:float @@ -12396,8 +12384,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000252 ! 111-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000247 ! centenarian stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "113.0" xsd:float property_value: IAO:0000589 "112-year-old stage (human)" xsd:string property_value: start_ypb "112.0" xsd:float @@ -12411,8 +12399,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000253 ! 112-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000247 ! centenarian stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "114.0" xsd:float property_value: IAO:0000589 "113-year-old stage (human)" xsd:string property_value: start_ypb "113.0" xsd:float @@ -12426,8 +12414,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000254 ! 113-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000247 ! centenarian stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "115.0" xsd:float property_value: IAO:0000589 "114-year-old stage (human)" xsd:string property_value: start_ypb "114.0" xsd:float @@ -12444,8 +12432,8 @@ synonym: "preschool child" RELATED [] xref: HP:0011463 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by UBERON:0034920 ! infant stage -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000112 ! sexually immature stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "5.0" xsd:float property_value: IAO:0000589 "child stage (1-4 yo) (human)" xsd:string property_value: start_ypb "1.0" xsd:float @@ -12458,8 +12446,8 @@ def: "A prime adult stage that refers to an adult who is under 40 years old." [B subset: life_stage xref: HP:0011462 is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "40.0" xsd:float property_value: IAO:0000589 "young adult stage (human)" xsd:string property_value: start_ypb "15.0" xsd:float @@ -12473,8 +12461,8 @@ subset: life_stage xref: HP:0003596 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000266 ! young adult stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "60.0" xsd:float property_value: IAO:0000589 "middle aged stage (human)" xsd:string property_value: start_ypb "40.0" xsd:float @@ -12487,8 +12475,8 @@ def: "A young adult stage that refers to an adult who is over 15 and under 20 ye subset: life_stage synonym: "adolescent" RELATED [] is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000266 ! young adult stage (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "20.0" xsd:float property_value: IAO:0000589 "15-19 year-old (human)" xsd:string property_value: start_ypb "15.0" xsd:float @@ -12502,8 +12490,8 @@ comment: We define here a child who is over 2 years and less than 5 years, and w subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by HsapDv:0000246 ! 1-year-old stage (human) -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of HsapDv:0000265 ! child stage (1-4 yo) (human) +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "5.0" xsd:float property_value: IAO:0000589 "2-4 year-old child stage (human)" xsd:string property_value: start_ypb "2.0" xsd:float @@ -12516,8 +12504,8 @@ def: "Late adult stage that refers to an adult who is under 80 years old." [Bgee subset: life_stage synonym: "elderly" RELATED [] is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0007222 ! late adult stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_ypb "80.0" xsd:float property_value: IAO:0000589 "60-79 year-old stage (human)" xsd:string property_value: start_ypb "60.0" xsd:float @@ -12531,8 +12519,8 @@ subset: granular_stage subset: life_stage xref: EV:0300039 is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens property_value: end_mpb "2.0" xsd:float property_value: IAO:0000589 "1-month-old stage (human)" xsd:string property_value: start_mpb "0.92" xsd:float @@ -13596,8 +13584,8 @@ synonym: "stage" NARROW [] xref: UBERON:0000105 is_a: UBERON:0000105 ! life cycle stage intersection_of: UBERON:0000105 ! life cycle stage -intersection_of: occurs_in NCBITaxon:10090 ! Mus musculus -relationship: occurs_in NCBITaxon:10090 ! Mus musculus +intersection_of: BFO:0000066 NCBITaxon:10090 ! occurs in Mus musculus +relationship: BFO:0000066 NCBITaxon:10090 ! occurs in Mus musculus property_value: IAO:0000589 "life cycle stage (mouse)" xsd:string [Term] @@ -13610,7 +13598,7 @@ xref: UBERON:0000104 is_a: MmusDv:0000000 ! life cycle stage is_a: UBERON:0000104 ! life cycle intersection_of: UBERON:0000104 ! life cycle -intersection_of: occurs_in NCBITaxon:10090 ! Mus musculus +intersection_of: BFO:0000066 NCBITaxon:10090 ! occurs in Mus musculus property_value: IAO:0000589 "life cycle (mouse)" xsd:string property_value: start_dpc "0.45" xsd:float @@ -13625,10 +13613,10 @@ subset: life_stage is_a: MmusDv:0000000 ! life cycle stage is_a: UBERON:0000068 ! embryo stage intersection_of: UBERON:0000068 ! embryo stage -intersection_of: occurs_in NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: BFO:0000066 NCBITaxon:10090 ! occurs in Mus musculus relationship: part_of MmusDv:0000042 ! prenatal stage relationship: part_of UBERON:0000068 ! embryo stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "embryo stage (mouse)" xsd:string property_value: IAO:0000589 "embryonic stage (mouse)" xsd:string property_value: start_dpc "0.45" xsd:float @@ -13665,7 +13653,7 @@ xref: UBERON:0000107 is_a: MmusDv:0000000 ! life cycle stage is_a: UBERON:0000107 ! cleavage stage intersection_of: UBERON:0000107 ! cleavage stage -intersection_of: occurs_in NCBITaxon:10090 ! Mus musculus +intersection_of: BFO:0000066 NCBITaxon:10090 ! occurs in Mus musculus relationship: immediately_preceded_by MmusDv:0000003 ! Theiler stage 01 relationship: part_of MmusDv:0000002 ! embryonic stage property_value: IAO:0000589 "cleavage stage (mouse)" xsd:string @@ -13687,8 +13675,8 @@ xref: XUO:0000046 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000003 ! Theiler stage 01 relationship: immediately_preceded_by UBERON:0000106 ! zygote stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000004 ! cleavage stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 02 (mouse)" xsd:string property_value: start_dpc "1.0" xsd:float property_value: start_dpc "1.0" xsd:float @@ -13709,8 +13697,8 @@ xref: EMAPA:TS03 xref: XUO:0000047 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000005 ! Theiler stage 02 -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000004 ! cleavage stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 03 (mouse)" xsd:string property_value: start_dpc "2.0" xsd:float property_value: start_dpc "2.0" xsd:float @@ -13726,7 +13714,7 @@ xref: UBERON:0000108 is_a: MmusDv:0000000 ! life cycle stage is_a: UBERON:0000108 ! blastula stage intersection_of: UBERON:0000108 ! blastula stage -intersection_of: occurs_in NCBITaxon:10090 ! Mus musculus +intersection_of: BFO:0000066 NCBITaxon:10090 ! occurs in Mus musculus relationship: part_of MmusDv:0000002 ! embryonic stage relationship: preceded_by MmusDv:0000004 ! cleavage stage property_value: IAO:0000589 "blastula stage (mouse)" xsd:string @@ -13747,8 +13735,8 @@ xref: EMAPA:TS04 xref: XUO:0000048 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000006 ! Theiler stage 03 -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000007 ! blastula stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 04 (mouse)" xsd:string property_value: start_dpc "3.0" xsd:float property_value: start_dpc "3.0" xsd:float @@ -13769,8 +13757,8 @@ xref: EMAPA:TS05 xref: XUO:0000049 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000008 ! Theiler stage 04 -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000007 ! blastula stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: has_stage_marker GO:0001835 property_value: has_stage_marker GO:0001835 property_value: IAO:0000589 "Theiler stage 05 (mouse)" xsd:string @@ -13793,8 +13781,8 @@ xref: EMAPA:TS06 xref: XUO:0000050 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000009 ! Theiler stage 05 (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000007 ! blastula stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 06 (mouse)" xsd:string property_value: start_dpc "4.5" xsd:float property_value: start_dpc "4.5" xsd:float @@ -13815,8 +13803,8 @@ xref: EMAPA:TS07 xref: XUO:0000051 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000010 ! Theiler stage 06 (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000007 ! blastula stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: has_stage_marker GO:0007566 property_value: has_stage_marker GO:0007566 property_value: IAO:0000589 "Theiler stage 07 (mouse)" xsd:string @@ -13839,8 +13827,8 @@ xref: EMAPA:TS08 xref: XUO:0000052 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000011 ! Theiler stage 07 (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000007 ! blastula stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 08 (mouse)" xsd:string property_value: start_dpc "6.0" xsd:float property_value: start_dpc "6.0" xsd:float @@ -13855,7 +13843,7 @@ xref: UBERON:0000109 is_a: MmusDv:0000000 ! life cycle stage is_a: UBERON:0000109 ! gastrula stage intersection_of: UBERON:0000109 ! gastrula stage -intersection_of: occurs_in NCBITaxon:10090 ! Mus musculus +intersection_of: BFO:0000066 NCBITaxon:10090 ! occurs in Mus musculus relationship: immediately_preceded_by MmusDv:0000007 ! blastula stage relationship: part_of MmusDv:0000002 ! embryonic stage property_value: IAO:0000589 "gastrula stage (mouse)" xsd:string @@ -13876,8 +13864,8 @@ xref: EMAPA:TS09 xref: XUO:0000053 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000012 ! Theiler stage 08 (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000013 ! gastrula stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: has_stage_marker UBERON:0000926 property_value: has_stage_marker UBERON:0000926 property_value: IAO:0000589 "Theiler stage 09 (mouse)" xsd:string @@ -13899,8 +13887,8 @@ xref: EMAPA:TS10 xref: XUO:0000054 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000014 ! Theiler stage 09 (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000013 ! gastrula stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: has_stage_marker UBERON:0003888 property_value: has_stage_marker UBERON:0003888 property_value: has_stage_marker UBERON:0004340 @@ -13928,7 +13916,7 @@ xref: XUO:0000055 is_a: MmusDv:0000000 ! life cycle stage is_a: UBERON:0000110 ! neurula stage intersection_of: UBERON:0000110 ! neurula stage -intersection_of: occurs_in NCBITaxon:10090 ! Mus musculus +intersection_of: BFO:0000066 NCBITaxon:10090 ! occurs in Mus musculus relationship: immediately_preceded_by MmusDv:0000015 ! Theiler stage 10 (mouse) relationship: part_of MmusDv:0000002 ! embryonic stage property_value: has_stage_marker UBERON:0003075 @@ -13945,7 +13933,7 @@ xref: UBERON:0000111 is_a: MmusDv:0000000 ! life cycle stage is_a: UBERON:0000111 ! organogenesis stage intersection_of: UBERON:0000111 ! organogenesis stage -intersection_of: occurs_in NCBITaxon:10090 ! Mus musculus +intersection_of: BFO:0000066 NCBITaxon:10090 ! occurs in Mus musculus relationship: immediately_preceded_by MmusDv:0000095 ! Theiler stage 11d (mouse) relationship: part_of MmusDv:0000002 ! embryonic stage property_value: IAO:0000589 "organogenesis stage (mouse)" xsd:string @@ -13965,8 +13953,8 @@ xref: EMAPA:TS12 xref: XUO:0000056 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000017 ! Theiler stage 11 -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000018 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: has_stage_marker EMAPA:16173 property_value: has_stage_marker EMAPA:16173 property_value: IAO:0000589 "Theiler stage 12 (mouse)" xsd:string @@ -13988,8 +13976,8 @@ xref: EMAPA:TS13 xref: XUO:0000057 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000019 ! Theiler stage 12 (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000018 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: has_stage_marker EMAPA:16441 property_value: has_stage_marker EMAPA:16441 property_value: has_stage_marker EMAPA:16445 @@ -14015,8 +14003,8 @@ xref: EMAPA:TS14 xref: XUO:0000058 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000020 ! Theiler stage 13 -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000018 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: has_stage_marker EMAPA:16445 property_value: has_stage_marker EMAPA:16445 property_value: has_stage_marker EMAPA:16449 @@ -14044,8 +14032,8 @@ xref: EMAPA:TS15 xref: XUO:0000059 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000021 ! Theiler stage 14 -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000018 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: has_stage_marker UBERON:0005417 property_value: has_stage_marker UBERON:0005417 property_value: IAO:0000589 "Theiler stage 15 (mouse)" xsd:string @@ -14067,8 +14055,8 @@ xref: EMAPA:TS16 xref: XUO:0000060 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000022 ! Theiler stage 15 -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000018 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: has_stage_marker UBERON:0005418 property_value: has_stage_marker UBERON:0005418 property_value: IAO:0000589 "Theiler stage 16 (mouse)" xsd:string @@ -14090,8 +14078,8 @@ xref: EMAPA:TS17 xref: XUO:0000061 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000023 ! Theiler stage 16 -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000018 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: has_stage_marker EMAPA:18411 property_value: has_stage_marker EMAPA:18411 property_value: has_stage_marker UBERON:0006259 @@ -14115,8 +14103,8 @@ xref: EMAPA:TS18 xref: XUO:0000062 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000024 ! Theiler stage 17 -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000018 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: has_stage_marker UBERON:0005870 property_value: has_stage_marker UBERON:0005870 property_value: IAO:0000589 "Theiler stage 18 (mouse)" xsd:string @@ -14138,8 +14126,8 @@ xref: EMAPA:TS19 xref: XUO:0000063 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000025 ! Theiler stage 18 -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000018 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 19 (mouse)" xsd:string property_value: start_dpc "11.5" xsd:float property_value: start_dpc "11.5" xsd:float @@ -14159,8 +14147,8 @@ xref: EMAPA:TS20 xref: XUO:0000064 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000026 ! Theiler stage 19 -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000018 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 20 (mouse)" xsd:string property_value: start_dpc "12.0" xsd:float property_value: start_dpc "12.0" xsd:float @@ -14180,8 +14168,8 @@ xref: EMAPA:TS21 xref: XUO:0000065 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000027 ! Theiler stage 20 (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000018 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 21 (mouse)" xsd:string property_value: start_dpc "13.0" xsd:float property_value: start_dpc "13.0" xsd:float @@ -14201,8 +14189,8 @@ xref: EMAPA:TS22 xref: XUO:0000066 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000028 ! Theiler stage 21 -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000018 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: has_stage_marker UBERON:0003606 property_value: has_stage_marker UBERON:0003606 property_value: IAO:0000589 "Theiler stage 22 (mouse)" xsd:string @@ -14220,7 +14208,7 @@ xref: UBERON:0007220 is_a: MmusDv:0000000 ! life cycle stage is_a: UBERON:0007220 ! late embryonic stage intersection_of: UBERON:0007220 ! late embryonic stage -intersection_of: occurs_in NCBITaxon:10090 ! Mus musculus +intersection_of: BFO:0000066 NCBITaxon:10090 ! occurs in Mus musculus relationship: immediately_preceded_by MmusDv:0000002 ! embryonic stage relationship: part_of MmusDv:0000042 ! prenatal stage property_value: IAO:0000589 "late embryonic stage (mouse)" xsd:string @@ -14240,8 +14228,8 @@ xref: EMAPA:TS23 xref: XUO:0000067 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000029 ! Theiler stage 22 -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000031 ! fetal stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 23 (mouse)" xsd:string property_value: start_dpc "15.0" xsd:float property_value: start_dpc "15.0" xsd:float @@ -14261,8 +14249,8 @@ xref: EMAPA:TS24 xref: XUO:0000068 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000032 ! Theiler stage 23 (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000031 ! fetal stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 24 (mouse)" xsd:string property_value: start_dpc "16.0" xsd:float property_value: start_dpc "16.0" xsd:float @@ -14282,8 +14270,8 @@ xref: EMAPA:TS25 xref: XUO:0000069 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000033 ! Theiler stage 24 (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000031 ! fetal stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 25 (mouse)" xsd:string property_value: start_dpc "17.0" xsd:float property_value: start_dpc "17.0" xsd:float @@ -14303,8 +14291,8 @@ xref: EMAPA:TS26 xref: XUO:0000070 is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000034 ! Theiler stage 25 (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000031 ! fetal stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_wpb "0.0" xsd:float property_value: end_wpb "0.0" xsd:float property_value: IAO:0000589 "Theiler stage 26 (mouse)" xsd:string @@ -14359,7 +14347,7 @@ xref: UBERON:0000112 is_a: MmusDv:0000000 ! life cycle stage is_a: UBERON:0000112 ! sexually immature stage intersection_of: UBERON:0000112 ! sexually immature stage -intersection_of: occurs_in NCBITaxon:10090 ! Mus musculus +intersection_of: BFO:0000066 NCBITaxon:10090 ! occurs in Mus musculus relationship: part_of MmusDv:0000092 ! postnatal stage property_value: end_wpb "6.0" xsd:float property_value: IAO:0000589 "sexually immature stage (mouse)" xsd:string @@ -14374,8 +14362,8 @@ def: "Early adult stage that refers to a mouse which is over 2 and under 3 month subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000152 ! 7-week-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000153 ! young adult stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "3.0" xsd:float property_value: end_mpb "3.0" xsd:float property_value: end_wpb "12.0" xsd:float @@ -14395,8 +14383,8 @@ def: "Early adult stage that refers to a mouse which is over 3 and under 4 month subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000062 ! 2-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000137 ! 3-6 month-old mature stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "4.0" xsd:float property_value: end_mpb "4.0" xsd:float property_value: end_wpb "16.0" xsd:float @@ -14416,8 +14404,8 @@ def: "Early adult stage that refers to a mouse which is over 4 and under 5 month subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000063 ! 3-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000137 ! 3-6 month-old mature stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "5.0" xsd:float property_value: end_mpb "5.0" xsd:float property_value: end_wpb "21.0" xsd:float @@ -14437,8 +14425,8 @@ def: "Mouse stage that refers to a mouse which is over 5 and under 6 months old. subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000064 ! 4-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000137 ! 3-6 month-old mature stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "6.0" xsd:float property_value: end_mpb "6.0" xsd:float property_value: end_wpb "25.0" xsd:float @@ -14458,8 +14446,8 @@ def: "Mouse stage that refers to a mouse which is over 6 and under 7 months old. subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000069 ! 5-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000137 ! 3-6 month-old mature stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "7.0" xsd:float property_value: end_mpb "7.0" xsd:float property_value: end_wpb "30.0" xsd:float @@ -14480,8 +14468,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000077 ! 6-month-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000153 ! young adult stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "8.0" xsd:float property_value: end_mpb "8.0" xsd:float property_value: IAO:0000589 "7-month-old stage (mouse)" xsd:string @@ -14500,8 +14488,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000078 ! 7-month-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000153 ! young adult stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "9.0" xsd:float property_value: end_mpb "9.0" xsd:float property_value: IAO:0000589 "8-month-old stage (mouse)" xsd:string @@ -14518,8 +14506,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000079 ! 8-month-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000153 ! young adult stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "10.0" xsd:float property_value: end_mpb "10.0" xsd:float property_value: IAO:0000589 "9-month-old stage (mouse)" xsd:string @@ -14536,8 +14524,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000080 ! 9-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000135 ! middle aged stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "11.0" xsd:float property_value: end_mpb "11.0" xsd:float property_value: IAO:0000589 "10-month-old stage (mouse)" xsd:string @@ -14554,8 +14542,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000081 ! 10-month-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000135 ! middle aged stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "12.0" xsd:float property_value: end_mpb "12.0" xsd:float property_value: IAO:0000589 "11-month-old stage (mouse)" xsd:string @@ -14572,8 +14560,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000082 ! 11-month-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000135 ! middle aged stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "13.0" xsd:float property_value: end_mpb "13.0" xsd:float property_value: IAO:0000589 "12-month-old stage (mouse)" xsd:string @@ -14590,8 +14578,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000083 ! 12-month-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000135 ! middle aged stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "14.0" xsd:float property_value: end_mpb "14.0" xsd:float property_value: IAO:0000589 "13-month-old stage (mouse)" xsd:string @@ -14608,8 +14596,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000084 ! 13-month-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000135 ! middle aged stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "15.0" xsd:float property_value: end_mpb "15.0" xsd:float property_value: IAO:0000589 "14-month-old stage (mouse)" xsd:string @@ -14626,8 +14614,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000085 ! 14-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000135 ! middle aged stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "16.0" xsd:float property_value: end_mpb "16.0" xsd:float property_value: IAO:0000589 "15-month-old stage (mouse)" xsd:string @@ -14644,8 +14632,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000086 ! 15-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000135 ! middle aged stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "17.0" xsd:float property_value: end_mpb "17.0" xsd:float property_value: IAO:0000589 "16-month-old stage (mouse)" xsd:string @@ -14662,8 +14650,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000087 ! 16-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000135 ! middle aged stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "18.0" xsd:float property_value: end_mpb "18.0" xsd:float property_value: IAO:0000589 "17-month-old stage (mouse)" xsd:string @@ -14680,9 +14668,9 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000088 ! 17-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000134 ! late adult stage relationship: part_of UBERON:0007222 ! late adult stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "19.0" xsd:float property_value: end_mpb "19.0" xsd:float property_value: IAO:0000589 "18-month-old stage (mouse)" xsd:string @@ -14699,9 +14687,9 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000089 ! 18-month-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000134 ! late adult stage relationship: part_of UBERON:0007222 ! late adult stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "20.0" xsd:float property_value: end_mpb "20.0" xsd:float property_value: IAO:0000589 "19-month-old stage (mouse)" xsd:string @@ -14718,9 +14706,9 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000090 ! 19-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000134 ! late adult stage relationship: part_of UBERON:0007222 ! late adult stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "20-month-old stage and over (mouse)" xsd:string property_value: start_mpb "20.0" xsd:float property_value: start_mpb "20.0" xsd:float @@ -14748,8 +14736,8 @@ subset: life_stage synonym: "TS11b" EXACT [] is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000111 ! Theiler stage 11a (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000017 ! Theiler stage 11 +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 11b (mouse)" xsd:string [Term] @@ -14762,8 +14750,8 @@ subset: life_stage synonym: "TS11c" EXACT [] is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000093 ! Theiler stage 11b (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000017 ! Theiler stage 11 +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 11c (mouse)" xsd:string [Term] @@ -14776,8 +14764,8 @@ subset: life_stage synonym: "TS11d" EXACT [] is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000094 ! Theiler stage 11c (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000017 ! Theiler stage 11 +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 11d (mouse)" xsd:string [Term] @@ -14790,8 +14778,8 @@ subset: life_stage is_a: MmusDv:0000000 ! life cycle stage is_a: UBERON:0007221 ! neonate stage intersection_of: UBERON:0007221 ! neonate stage -intersection_of: occurs_in NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: BFO:0000066 NCBITaxon:10090 ! occurs in Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_wpb "1.0" xsd:float property_value: end_wpb "1.0" xsd:float property_value: IAO:0000589 "early immature stage (mouse)" xsd:string @@ -14814,8 +14802,8 @@ subset: life_stage synonym: "Theiler stage 9" EXACT [] synonym: "TS09a" EXACT [] is_a: MmusDv:0000000 ! life cycle stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000014 ! Theiler stage 09 (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 09a (mouse)" xsd:string [Term] @@ -14829,8 +14817,8 @@ synonym: "Theiler stage 9" EXACT [] synonym: "TS09b" EXACT [] is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000103 ! Theiler stage 09a (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000014 ! Theiler stage 09 (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 09b (mouse)" xsd:string [Term] @@ -14843,8 +14831,8 @@ comment: Refers to MS (mid-streak) stage in Downs and Davies staging of gastrula subset: life_stage synonym: "TS10a" EXACT [] is_a: MmusDv:0000000 ! life cycle stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000015 ! Theiler stage 10 (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 10a (mouse)" xsd:string [Term] @@ -14858,8 +14846,8 @@ subset: life_stage synonym: "TS10b" EXACT [] is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000105 ! Theiler stage 10a -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000015 ! Theiler stage 10 (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 10b (mouse)" xsd:string [Term] @@ -14873,8 +14861,8 @@ subset: life_stage synonym: "TS10c" EXACT [] is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000106 ! Theiler stage 10b -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000015 ! Theiler stage 10 (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 10c (mouse)" xsd:string [Term] @@ -14887,8 +14875,8 @@ comment: Embryonic age 8 dpc (day post coitum). Refers to human CarnegieStage09. subset: life_stage synonym: "TS12a" EXACT [] is_a: MmusDv:0000000 ! life cycle stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000019 ! Theiler stage 12 (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 12a (mouse)" xsd:string [Term] @@ -14902,8 +14890,8 @@ subset: life_stage synonym: "TS12b" EXACT [] is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000108 ! Theiler stage 12a (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000019 ! Theiler stage 12 (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 12b (mouse)" xsd:string [Term] @@ -14917,7 +14905,7 @@ xref: UBERON:0000113 is_a: MmusDv:0000000 ! life cycle stage is_a: UBERON:0000113 ! post-juvenile adult stage intersection_of: UBERON:0000113 ! post-juvenile adult stage -intersection_of: occurs_in NCBITaxon:10090 ! Mus musculus +intersection_of: BFO:0000066 NCBITaxon:10090 ! occurs in Mus musculus relationship: immediately_preceded_by MmusDv:0000043 ! immature stage relationship: part_of MmusDv:0000092 ! postnatal stage property_value: IAO:0000589 "post-juvenile adult stage (mouse)" xsd:string @@ -14933,8 +14921,8 @@ def: "Embryonic neurula stage during which the neural plate formation occurs and subset: life_stage synonym: "TS11a" EXACT [] is_a: MmusDv:0000000 ! life cycle stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000017 ! Theiler stage 11 +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: IAO:0000589 "Theiler stage 11a (mouse)" xsd:string [Term] @@ -14948,8 +14936,8 @@ subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000036 ! Theiler stage 27 relationship: immediately_preceded_by UBERON:0007221 ! neonate stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000139 ! 4-6 days (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "5.0" xsd:float property_value: end_dpb "5.0" xsd:float property_value: IAO:0000589 "4-day-old stage (mouse)" xsd:string @@ -14966,8 +14954,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000114 ! 4-day-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000139 ! 4-6 days (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "6.0" xsd:float property_value: end_dpb "6.0" xsd:float property_value: IAO:0000589 "5-day-old stage (mouse)" xsd:string @@ -14984,8 +14972,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000115 ! 5-day-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000139 ! 4-6 days (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "7.0" xsd:float property_value: end_dpb "7.0" xsd:float property_value: IAO:0000589 "6-day-old stage (mouse)" xsd:string @@ -15002,8 +14990,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000116 ! 6-day-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000140 ! 1-week-old stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "8.0" xsd:float property_value: end_dpb "8.0" xsd:float property_value: IAO:0000589 "7-day-old stage (mouse)" xsd:string @@ -15020,8 +15008,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000117 ! 7-day-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000140 ! 1-week-old stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "9.0" xsd:float property_value: end_dpb "9.0" xsd:float property_value: IAO:0000589 "8-day-old stage (mouse)" xsd:string @@ -15038,8 +15026,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000118 ! 8-day-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000140 ! 1-week-old stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "10.0" xsd:float property_value: end_dpb "10.0" xsd:float property_value: IAO:0000589 "9-day-old stage (mouse)" xsd:string @@ -15056,8 +15044,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000119 ! 9-day-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000140 ! 1-week-old stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "11.0" xsd:float property_value: end_dpb "11.0" xsd:float property_value: IAO:0000589 "10-day-old stage (mouse)" xsd:string @@ -15074,8 +15062,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000120 ! 10-day-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000140 ! 1-week-old stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "12.0" xsd:float property_value: end_dpb "12.0" xsd:float property_value: IAO:0000589 "11-day-old stage (mouse)" xsd:string @@ -15092,8 +15080,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000121 ! 11-day-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000140 ! 1-week-old stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "13.0" xsd:float property_value: end_dpb "13.0" xsd:float property_value: IAO:0000589 "12-day-old stage (mouse)" xsd:string @@ -15110,8 +15098,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000122 ! 12-day-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000140 ! 1-week-old stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "14.0" xsd:float property_value: end_dpb "14.0" xsd:float property_value: IAO:0000589 "13-day-old stage (mouse)" xsd:string @@ -15128,8 +15116,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000090 ! 19-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000091 ! 20-month-old stage and over +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "21.0" xsd:float property_value: end_mpb "21.0" xsd:float property_value: IAO:0000589 "20-month-old stage (mouse)" xsd:string @@ -15146,8 +15134,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000124 ! 20-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000091 ! 20-month-old stage and over +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "22.0" xsd:float property_value: end_mpb "22.0" xsd:float property_value: IAO:0000589 "21-month-old stage (mouse)" xsd:string @@ -15164,8 +15152,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000125 ! 21-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000091 ! 20-month-old stage and over +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "23.0" xsd:float property_value: end_mpb "23.0" xsd:float property_value: IAO:0000589 "22-month-old stage (mouse)" xsd:string @@ -15182,8 +15170,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000126 ! 22-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000091 ! 20-month-old stage and over +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "24.0" xsd:float property_value: end_mpb "24.0" xsd:float property_value: IAO:0000589 "23-month-old stage (mouse)" xsd:string @@ -15200,8 +15188,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000127 ! 23-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000091 ! 20-month-old stage and over +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "25.0" xsd:float property_value: end_mpb "25.0" xsd:float property_value: IAO:0000589 "24-month-old stage (mouse)" xsd:string @@ -15218,8 +15206,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000128 ! 24-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000091 ! 20-month-old stage and over +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "26.0" xsd:float property_value: end_mpb "26.0" xsd:float property_value: IAO:0000589 "25-month-old stage (mouse)" xsd:string @@ -15236,8 +15224,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000129 ! 25-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000091 ! 20-month-old stage and over +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "27.0" xsd:float property_value: end_mpb "27.0" xsd:float property_value: IAO:0000589 "26-month-old stage (mouse)" xsd:string @@ -15254,8 +15242,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000130 ! 26-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000091 ! 20-month-old stage and over +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "28.0" xsd:float property_value: end_mpb "28.0" xsd:float property_value: IAO:0000589 "27-month-old stage (mouse)" xsd:string @@ -15272,8 +15260,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000131 ! 27-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000091 ! 20-month-old stage and over +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "29.0" xsd:float property_value: end_mpb "29.0" xsd:float property_value: IAO:0000589 "28-month-old stage (mouse)" xsd:string @@ -15290,8 +15278,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000132 ! 28-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000091 ! 20-month-old stage and over +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "30.0" xsd:float property_value: end_mpb "30.0" xsd:float property_value: IAO:0000589 "29-month-old stage (mouse)" xsd:string @@ -15323,9 +15311,9 @@ subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000080 ! 9-month-old stage relationship: immediately_preceded_by MmusDv:0000153 ! young adult stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000136 ! prime adult stage relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "18.0" xsd:float property_value: end_mpb "18.0" xsd:float property_value: IAO:0000589 "middle aged stage (mouse)" xsd:string @@ -15357,8 +15345,8 @@ comment: This stage is often used as the reference group for any age change in a subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000062 ! 2-month-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000153 ! young adult stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "7.0" xsd:float property_value: end_mpb "7.0" xsd:float property_value: IAO:0000589 "3-6 month-old mature stage (mouse)" xsd:string @@ -15387,9 +15375,9 @@ def: "Immature stage that refers to the newborn mouse which is over 4 days and u comment: This stage starts at P4. subset: life_stage is_a: MmusDv:0000000 ! life cycle stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000177 ! infant stage relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "7.0" xsd:float property_value: end_dpb "7.0" xsd:float property_value: end_wpb "1.0" xsd:float @@ -15409,9 +15397,9 @@ def: "Immature stage that refers to a mouse which is over 7 days and under 14 da subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000139 ! 4-6 days (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000177 ! infant stage relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "14.0" xsd:float property_value: end_dpb "14.0" xsd:float property_value: end_wpb "2.0" xsd:float @@ -15431,9 +15419,9 @@ def: "Immature stage that refers to a mouse which is over 14 days and under 21 d subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000140 ! 1-week-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000177 ! infant stage relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "21.0" xsd:float property_value: end_dpb "21.0" xsd:float property_value: end_wpb "3.0" xsd:float @@ -15454,9 +15442,9 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000141 ! 2-week-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000177 ! infant stage relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "22.0" xsd:float property_value: end_dpb "22.0" xsd:float property_value: IAO:0000589 "21-day-old stage (mouse)" xsd:string @@ -15473,9 +15461,9 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000142 ! 21-day-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000177 ! infant stage relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "23.0" xsd:float property_value: end_dpb "23.0" xsd:float property_value: IAO:0000589 "22-day-old stage (mouse)" xsd:string @@ -15492,9 +15480,9 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000143 ! 22-day-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000178 ! juvenile stage relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "24.0" xsd:float property_value: end_dpb "24.0" xsd:float property_value: IAO:0000589 "23-day-old stage (mouse)" xsd:string @@ -15511,9 +15499,9 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000144 ! 23-day-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000178 ! juvenile stage relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "25.0" xsd:float property_value: end_dpb "25.0" xsd:float property_value: IAO:0000589 "24-day-old stage (mouse)" xsd:string @@ -15530,9 +15518,9 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000145 ! 24-day-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000178 ! juvenile stage relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "22.0" xsd:float property_value: end_dpb "22.0" xsd:float property_value: IAO:0000589 "25-day-old stage (mouse)" xsd:string @@ -15549,9 +15537,9 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000146 ! 25-day-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000178 ! juvenile stage relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "27.0" xsd:float property_value: end_dpb "27.0" xsd:float property_value: IAO:0000589 "26-day-old stage (mouse)" xsd:string @@ -15568,9 +15556,9 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000147 ! 26-day-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000178 ! juvenile stage relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "28.0" xsd:float property_value: end_dpb "28.0" xsd:float property_value: IAO:0000589 "27-day-old stage (mouse)" xsd:string @@ -15586,9 +15574,9 @@ def: "Immature stage that refers to a mouse which is over 28 days and under 35 d subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000148 ! 27-day-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000178 ! juvenile stage relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "35.0" xsd:float property_value: end_dpb "35.0" xsd:float property_value: end_wpb "5.0" xsd:float @@ -15609,9 +15597,9 @@ comment: This stage is usually the stage during which the sexual maturity occurs subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000149 ! 4-week-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000178 ! juvenile stage relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "42.0" xsd:float property_value: end_dpb "42.0" xsd:float property_value: end_wpb "6.0" xsd:float @@ -15632,8 +15620,8 @@ comment: This stage is commonly considered in the literature as the milestone th subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000150 ! 5-week-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000153 ! young adult stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "49.0" xsd:float property_value: end_dpb "49.0" xsd:float property_value: end_wpb "7.0" xsd:float @@ -15654,8 +15642,8 @@ comment: This stage is commonly considered in the literature as the milestone th subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000151 ! 6-week-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000153 ! young adult stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "56.0" xsd:float property_value: end_dpb "56.0" xsd:float property_value: end_wpb "8.0" xsd:float @@ -15676,9 +15664,9 @@ comment: This stage is adapted from https://www.jax.org/news-and-insights/jax-bl subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000150 ! 5-week-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000136 ! prime adult stage relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "10.0" xsd:float property_value: end_mpb "10.0" xsd:float property_value: IAO:0000589 "young adult stage (mouse)" xsd:string @@ -15693,8 +15681,8 @@ namespace: mouse_developmental_stage def: "Mouse stage that refers to a mouse which is over 56 days and under 63 days old." [Bgee:curator] subset: life_stage is_a: MmusDv:0000000 ! life cycle stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000062 ! 2-month-old stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "63.0" xsd:float property_value: end_dpb "63.0" xsd:float property_value: end_wpb "9.0" xsd:float @@ -15714,8 +15702,8 @@ def: "Mouse stage that refers to a mouse which is over 63 days and under 70 days subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000154 ! 8-week-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000062 ! 2-month-old stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "70.0" xsd:float property_value: end_dpb "70.0" xsd:float property_value: end_wpb "10.0" xsd:float @@ -15735,8 +15723,8 @@ def: "Mouse stage that refers to a mouse which is over 70 days and under 77 days subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000155 ! 9-week-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000062 ! 2-month-old stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "77.0" xsd:float property_value: end_dpb "77.0" xsd:float property_value: end_wpb "11.0" xsd:float @@ -15756,8 +15744,8 @@ def: "Mouse stage that refers to a mouse which is over 77 days and under 84 days subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000156 ! 10-week-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000062 ! 2-month-old stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "84.0" xsd:float property_value: end_dpb "84.0" xsd:float property_value: end_wpb "12.0" xsd:float @@ -15778,8 +15766,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000157 ! 11-week-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000063 ! 3-month-old stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "91.0" xsd:float property_value: end_dpb "91.0" xsd:float property_value: end_wpb "13.0" xsd:float @@ -15800,8 +15788,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000158 ! 12-week-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000063 ! 3-month-old stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "98.0" xsd:float property_value: end_dpb "98.0" xsd:float property_value: end_wpb "14.0" xsd:float @@ -15822,8 +15810,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000159 ! 13-week-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000063 ! 3-month-old stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "105.0" xsd:float property_value: end_dpb "105.0" xsd:float property_value: end_wpb "15.0" xsd:float @@ -15844,8 +15832,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000160 ! 14-week-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000063 ! 3-month-old stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "112.0" xsd:float property_value: end_dpb "112.0" xsd:float property_value: end_wpb "16.0" xsd:float @@ -15866,8 +15854,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000161 ! 15-week-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000064 ! 4-month-old stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "119.0" xsd:float property_value: end_dpb "119.0" xsd:float property_value: end_wpb "17.0" xsd:float @@ -15888,8 +15876,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000162 ! 16-week-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000064 ! 4-month-old stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "126.0" xsd:float property_value: end_dpb "126.0" xsd:float property_value: end_wpb "18.0" xsd:float @@ -15910,8 +15898,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000163 ! 17-week-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000064 ! 4-month-old stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "133.0" xsd:float property_value: end_dpb "133.0" xsd:float property_value: end_wpb "19.0" xsd:float @@ -15932,8 +15920,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000164 ! 18-week-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000064 ! 4-month-old stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "140.0" xsd:float property_value: end_dpb "140.0" xsd:float property_value: end_wpb "20.0" xsd:float @@ -15954,8 +15942,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000165 ! 19-week-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000064 ! 4-month-old stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "147.0" xsd:float property_value: end_dpb "147.0" xsd:float property_value: end_wpb "21.0" xsd:float @@ -15976,8 +15964,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000166 ! 20-week-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000069 ! 5-month-old stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "154.0" xsd:float property_value: end_dpb "154.0" xsd:float property_value: end_wpb "22.0" xsd:float @@ -15998,8 +15986,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000167 ! 21-week-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000069 ! 5-month-old stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "161.0" xsd:float property_value: end_dpb "161.0" xsd:float property_value: end_wpb "23.0" xsd:float @@ -16020,8 +16008,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000168 ! 22-week-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000069 ! 5-month-old stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "168.0" xsd:float property_value: end_dpb "168.0" xsd:float property_value: end_wpb "24.0" xsd:float @@ -16042,8 +16030,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000169 ! 23-week-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000069 ! 5-month-old stage +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "175.0" xsd:float property_value: end_dpb "175.0" xsd:float property_value: end_wpb "25.0" xsd:float @@ -16064,8 +16052,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000170 ! 24-week-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000077 ! 6-month-old stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "182.0" xsd:float property_value: end_dpb "182.0" xsd:float property_value: end_wpb "26.0" xsd:float @@ -16086,8 +16074,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000171 ! 25-week-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000077 ! 6-month-old stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "189.0" xsd:float property_value: end_dpb "189.0" xsd:float property_value: end_wpb "27.0" xsd:float @@ -16108,8 +16096,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000172 ! 26-week-old stage -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000077 ! 6-month-old stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "196.0" xsd:float property_value: end_dpb "196.0" xsd:float property_value: end_wpb "28.0" xsd:float @@ -16130,8 +16118,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000173 ! 27-week-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000077 ! 6-month-old stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "203.0" xsd:float property_value: end_dpb "203.0" xsd:float property_value: end_wpb "29.0" xsd:float @@ -16152,8 +16140,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000174 ! 28-week-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000077 ! 6-month-old stage (mouse) +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_dpb "210.0" xsd:float property_value: end_dpb "210.0" xsd:float property_value: end_wpb "30.0" xsd:float @@ -16174,8 +16162,8 @@ subset: granular_stage subset: life_stage is_a: MmusDv:0000000 ! life cycle stage relationship: immediately_preceded_by MmusDv:0000133 ! 29-month-old stage (mouse) -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus relationship: part_of MmusDv:0000091 ! 20-month-old stage and over +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus property_value: end_mpb "31.0" xsd:float property_value: end_mpb "31.0" xsd:float property_value: IAO:0000589 "30-month-old stage (mouse)" xsd:string @@ -17544,6 +17532,7 @@ name: quality namespace: quality alt_id: PATO:0000072 def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" [PATOC:GVG] +is_a: BFO:0000020 ! specifically dependent continuant [Term] id: PATO:0000051 @@ -17668,7 +17657,7 @@ synonym: "rod-like" EXACT [] synonym: "rod-shaped" EXACT [] synonym: "tubulate" NARROW [] is_a: PATO:0002007 ! convex 3-D shape -relationship: has_cross_section PATO:0000411 ! circular +relationship: RO:0015011 PATO:0000411 ! has cross section circular [Term] id: PATO:0001992 @@ -17713,7 +17702,7 @@ comment: Use this term or an is_a child of this term when the entire shape of th subset: attribute_slim xref: Image:http\://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png is_a: PATO:0002266 ! 3-D shape -relationship: has_cross_section PATO:0002006 ! 2-D shape +relationship: RO:0015011 PATO:0002006 ! has cross section 2-D shape [Term] id: PATO:0002014 @@ -17813,7 +17802,7 @@ id: PR:000000001 name: protein namespace: protein def: "An amino acid chain that is produced de novo by ribosome-mediated translation of a genetically-encoded mRNA, and any derivatives thereof." [PRO:DAN, PRO:WCB] -comment: The definition above excludes protein complexes, which some also consider a protein. Those who wish to refer to a class representing both senses of the word are directed to CHEBI:36080. Note that the definition allows for experimentally-manipulated genes, and allows for artifically-produced derivatives that mimic those found naturally. Proteins (in the sense defined here) that descended from a common ancestor can be classified into families and superfamilies composed of products of evolutionarily-related genes. The domain architecture of a protein is described by the order of its constituent domains. Proteins with the same domains in the same order are defined as homeomorphic [PRO:WCB]. +comment: The definition above excludes protein complexes, which some also consider a protein. Those who wish to refer to a class representing both senses of the word are directed to CHEBI:36080. Note that the definition allows for experimentally-manipulated genes, and allows for artifically-produced derivatives that mimic those found naturally. Proteins (in the sense defined here) that descended from a common ancestor can be classified into families and superfamilies composed of products of evolutionarily-related genes. The domain architecture of a protein is described by the order of its constituent domains. Proteins with the same domains in the same order are defined as homeomorphic [PRO:WCB). synonym: "native protein" NARROW [IEDB:BP] synonym: "natural protein" EXACT [PRO:DAN] is_a: PR:000018263 ! amino acid chain @@ -18928,8 +18917,8 @@ def: "Prenatal stage that starts with fertilization and ends with a fully formed comment: This stage covers the first 16 days of the embryonic development, from Standard Witschi Stage 1 until Standard Witschi Stage 33 (see http://php.med.unsw.edu.au/embryology/index.php?title=Rat_Timeline), we treat fetus as a separate stage. subset: life_stage is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0000068 ! embryo stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_dpf "16.0" xsd:float property_value: IAO:0000589 "embryonic stage (rat)" xsd:string property_value: start_dpc "0.45" xsd:float @@ -18944,8 +18933,8 @@ comment: This stage corresponds to Standard Witschi Stage 12 (see http://php.med subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by UBERON:0000109 ! gastrula stage -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0000109 ! gastrula stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_dpf "8.5" xsd:float property_value: IAO:0000589 "primitive streak stage (rat)" xsd:string property_value: start_dpf "7.75" xsd:float @@ -18959,8 +18948,8 @@ comment: This stage corresponds to Standard Witschi Stage 18 up to 24 (see http: subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by UBERON:0000110 ! neurula stage -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_dpf "12.375" xsd:float property_value: IAO:0000589 "tail bud embryo stage (rat)" xsd:string property_value: start_dpf "11.0" xsd:float @@ -18974,8 +18963,8 @@ comment: This stage corresponds to Standard Witschi Stage 25 (see http://php.med subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000008 ! tail bud embryo stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_dpf "12.5" xsd:float property_value: IAO:0000589 "complete embryo stage (rat)" xsd:string property_value: start_dpf "12.375" xsd:float @@ -18989,8 +18978,8 @@ comment: This stage corresponds to Standard Witschi Stage 26 up to 33 (see http: subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000009 ! complete embryo stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_dpf "16.0" xsd:float property_value: IAO:0000589 "metamorphosing embryo stage (rat)" xsd:string property_value: start_dpf "12.5" xsd:float @@ -19003,8 +18992,8 @@ def: "Rat developmental stage that refers to a sexually mature adult rat, which subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_wpb "11.0" xsd:float property_value: IAO:0000589 "10-week-old stage (rat)" xsd:string property_value: start_wpb "10.0" xsd:float @@ -19018,8 +19007,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000016 ! 10-week-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_wpb "12.0" xsd:float property_value: IAO:0000589 "11-week-old stage (rat)" xsd:string property_value: start_wpb "11.0" xsd:float @@ -19033,8 +19022,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000017 ! 11-week-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "4.0" xsd:float property_value: end_wpb "13.0" xsd:float property_value: IAO:0000589 "3-month-old stage (rat)" xsd:string @@ -19049,9 +19038,9 @@ def: "Rat developmental stage that refers to a sexually mature adult rat, which comment: This stage was created to match age provided by GEO Rat expression data. subset: life_stage is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0018241 ! prime adult stage relationship: preceded_by RnorDv:0000018 ! 3-month-old stage (rat) +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "7.0" xsd:float property_value: IAO:0000589 "4-6-month-old stage (rat)" xsd:string property_value: start_mpb "4.0" xsd:float @@ -19065,8 +19054,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000018 ! 3-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of RnorDv:0000019 ! 4-6-month-old stage (rat) +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "5.0" xsd:float property_value: IAO:0000589 "4-month-old stage (rat)" xsd:string property_value: start_mpb "4.0" xsd:float @@ -19080,8 +19069,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000020 ! 4-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of RnorDv:0000019 ! 4-6-month-old stage (rat) +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "6.0" xsd:float property_value: IAO:0000589 "5-month-old stage (rat)" xsd:string property_value: start_mpb "5.0" xsd:float @@ -19095,8 +19084,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000021 ! 5-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of RnorDv:0000019 ! 4-6-month-old stage (rat) +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "7.0" xsd:float property_value: IAO:0000589 "6-month-old stage (rat)" xsd:string property_value: start_mpb "6.0" xsd:float @@ -19110,8 +19099,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000022 ! 6-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "8.0" xsd:float property_value: IAO:0000589 "7-month-old stage (rat)" xsd:string property_value: start_mpb "7.0" xsd:float @@ -19125,8 +19114,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000023 ! 7-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "9.0" xsd:float property_value: IAO:0000589 "8-month-old stage (rat)" xsd:string property_value: start_mpb "8.0" xsd:float @@ -19140,8 +19129,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000024 ! 8-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "10.0" xsd:float property_value: IAO:0000589 "9-month-old stage (rat)" xsd:string property_value: start_mpb "9.0" xsd:float @@ -19155,8 +19144,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000025 ! 9-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "11.0" xsd:float property_value: IAO:0000589 "10-month-old stage (rat)" xsd:string property_value: start_mpb "10.0" xsd:float @@ -19170,8 +19159,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000026 ! 10-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "12.0" xsd:float property_value: IAO:0000589 "11-month-old stage (rat)" xsd:string property_value: start_mpb "11.0" xsd:float @@ -19185,8 +19174,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000027 ! 11-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "13.0" xsd:float property_value: IAO:0000589 "12-month-old stage (rat)" xsd:string property_value: start_mpb "12.0" xsd:float @@ -19200,8 +19189,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000028 ! 12-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "14.0" xsd:float property_value: IAO:0000589 "13-month-old stage (rat)" xsd:string property_value: start_mpb "13.0" xsd:float @@ -19215,8 +19204,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000029 ! 13-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "15.0" xsd:float property_value: IAO:0000589 "14-month-old stage (rat)" xsd:string property_value: start_mpb "14.0" xsd:float @@ -19230,8 +19219,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000030 ! 14-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "16.0" xsd:float property_value: IAO:0000589 "15-month-old stage (rat)" xsd:string property_value: start_mpb "15.0" xsd:float @@ -19245,8 +19234,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000031 ! 15-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "17.0" xsd:float property_value: IAO:0000589 "16-month-old stage (rat)" xsd:string property_value: start_mpb "16.0" xsd:float @@ -19260,8 +19249,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000032 ! 16-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "18.0" xsd:float property_value: IAO:0000589 "17-month-old stage (rat)" xsd:string property_value: start_mpb "17.0" xsd:float @@ -19275,8 +19264,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000033 ! 17-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0007222 ! late adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "19.0" xsd:float property_value: IAO:0000589 "18-month-old stage (rat)" xsd:string property_value: start_mpb "18.0" xsd:float @@ -19290,8 +19279,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000034 ! 18-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0007222 ! late adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "20.0" xsd:float property_value: IAO:0000589 "19-month-old stage (rat)" xsd:string property_value: start_mpb "19.0" xsd:float @@ -19305,8 +19294,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000035 ! 19-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0007222 ! late adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "21.0" xsd:float property_value: IAO:0000589 "20-month-old stage (rat)" xsd:string property_value: start_mpb "20.0" xsd:float @@ -19320,8 +19309,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000036 ! 20-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0007222 ! late adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "22.0" xsd:float property_value: IAO:0000589 "21-month-old stage (rat)" xsd:string property_value: start_mpb "21.0" xsd:float @@ -19335,8 +19324,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000037 ! 21-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0007222 ! late adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "23.0" xsd:float property_value: IAO:0000589 "22-month-old stage (rat)" xsd:string property_value: start_mpb "22.0" xsd:float @@ -19350,8 +19339,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000038 ! 22-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0007222 ! late adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "24.0" xsd:float property_value: IAO:0000589 "23-month-old stage (rat)" xsd:string property_value: start_mpb "23.0" xsd:float @@ -19365,9 +19354,9 @@ comment: This stage was created to match age provided by GEO Rat expression data subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0007222 ! late adult stage relationship: preceded_by RnorDv:0000039 ! 23-month-old stage (rat) +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "27.0" xsd:float property_value: IAO:0000589 "24-26-month-old stage (rat)" xsd:string property_value: start_mpb "24.0" xsd:float @@ -19381,8 +19370,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000039 ! 23-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of RnorDv:0000040 ! 24-26-month-old stage (rat) +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "25.0" xsd:float property_value: IAO:0000589 "24-month-old stage (rat)" xsd:string property_value: start_mpb "24.0" xsd:float @@ -19396,8 +19385,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000041 ! 24-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of RnorDv:0000040 ! 24-26-month-old stage (rat) +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "26.0" xsd:float property_value: IAO:0000589 "25-month-old stage (rat)" xsd:string property_value: start_mpb "25.0" xsd:float @@ -19411,8 +19400,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000042 ! 25-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of RnorDv:0000040 ! 24-26-month-old stage (rat) +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "27.0" xsd:float property_value: IAO:0000589 "26-month-old stage (rat)" xsd:string property_value: start_mpb "26.0" xsd:float @@ -19426,8 +19415,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000043 ! 26-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0007222 ! late adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "28.0" xsd:float property_value: IAO:0000589 "27-month-old stage (rat)" xsd:string property_value: start_mpb "27.0" xsd:float @@ -19441,8 +19430,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000044 ! 27-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0007222 ! late adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "29.0" xsd:float property_value: IAO:0000589 "28-month-old stage (rat)" xsd:string property_value: start_mpb "28.0" xsd:float @@ -19456,8 +19445,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000045 ! 28-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0007222 ! late adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "30.0" xsd:float property_value: IAO:0000589 "29-month-old stage (rat)" xsd:string property_value: start_mpb "29.0" xsd:float @@ -19471,8 +19460,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000046 ! 29-month-old stage (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0007222 ! late adult stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_mpb "31.0" xsd:float property_value: IAO:0000589 "30-month-old stage (rat)" xsd:string property_value: start_mpb "30.0" xsd:float @@ -19486,8 +19475,8 @@ comment: This stage occurs during the second day after fertilization (see https: subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by UBERON:0000106 ! zygote stage -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0000107 ! cleavage stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_dpf "2.0" xsd:float property_value: IAO:0000589 "Witschi stage 2 (rat)" xsd:string property_value: start_dpf "1.0" xsd:float @@ -19501,8 +19490,8 @@ comment: This stage occurs during the third day of rat development (see https:// subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000050 ! Witschi stage 2 (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0000107 ! cleavage stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_dpf "3.0" xsd:float property_value: IAO:0000589 "Witschi stage 3 (rat)" xsd:string property_value: start_dpf "2.0" xsd:float @@ -19516,8 +19505,8 @@ comment: This stage occurs during the third day of rat development (see https:// subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000051 ! Witschi stage 3 (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0000107 ! cleavage stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_dpf "3.25" xsd:float property_value: IAO:0000589 "Witschi stage 4 (rat)" xsd:string property_value: start_dpf "3.0" xsd:float @@ -19531,8 +19520,8 @@ comment: This stage occurs during the third day of rat development (see https:// subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by RnorDv:0000052 ! Witschi stage 4 (rat) -relationship: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus relationship: part_of UBERON:0000107 ! cleavage stage +relationship: RO:0002160 NCBITaxon:10116 ! only in taxon Rattus norvegicus property_value: end_dpf "3.5" xsd:float property_value: IAO:0000589 "Witschi stage 5 (rat)" xsd:string property_value: start_dpf "3.25" xsd:float @@ -19545,8 +19534,8 @@ def: "Immature stage that refers to a pig which is over 1 and under 2 weeks old. subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000078 ! 6-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "2.0" xsd:float property_value: IAO:0000589 "1-week-old stage (pig)" xsd:string property_value: start_dpb "7.0" xsd:float @@ -19560,8 +19549,8 @@ def: "Immature stage that refers to a pig which is over 2 and under 3 weeks old. subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000010 ! 1-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "3.0" xsd:float property_value: IAO:0000589 "2-week-old stage (pig)" xsd:string property_value: start_wpb "2.0" xsd:float @@ -19574,8 +19563,8 @@ def: "Immature stage that refers to a pig which is over 3 and under 4 weeks old. subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000011 ! 2-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "4.0" xsd:float property_value: IAO:0000589 "3-week-old stage (pig)" xsd:string property_value: start_dpb "21.0" xsd:float @@ -19589,8 +19578,8 @@ def: "Immature stage that refers to a pig which is over 4 and under 5 weeks old. subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000012 ! 3-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "5.0" xsd:float property_value: IAO:0000589 "4-week-old stage (pig)" xsd:string property_value: start_wpb "4.0" xsd:float @@ -19603,8 +19592,8 @@ def: "Immature stage that refers to a pig which is over 5 and under 6 weeks old. subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000013 ! 4-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "6.0" xsd:float property_value: IAO:0000589 "5-week-old stage (pig)" xsd:string property_value: start_wpb "5.0" xsd:float @@ -19617,8 +19606,8 @@ def: "Immature stage that refers to a pig which is over 6 and under 7 weeks old. subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000014 ! 5-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "7.0" xsd:float property_value: IAO:0000589 "6-week-old stage (pig)" xsd:string property_value: start_wpb "6.0" xsd:float @@ -19631,8 +19620,8 @@ def: "Immature stage that refers to a pig which is over 7 and under 8 weeks old. subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000015 ! 6-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0034920 ! infant stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "8.0" xsd:float property_value: IAO:0000589 "7-week-old stage (pig)" xsd:string property_value: start_wpb "7.0" xsd:float @@ -19646,8 +19635,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000016 ! 7-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000039 ! 2-month-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "9.0" xsd:float property_value: IAO:0000589 "8-week-old stage (pig)" xsd:string property_value: start_wpb "8.0" xsd:float @@ -19660,8 +19649,8 @@ def: "Immature stage that refers to a pig which is over 21 and under 22 days old subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000012 ! 3-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "22.0" xsd:float property_value: IAO:0000589 "21-day-old stage (pig)" xsd:string property_value: start_dpb "21.0" xsd:float @@ -19676,8 +19665,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000018 ! 21-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000012 ! 3-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "23.0" xsd:float property_value: IAO:0000589 "22-day-old stage (pig)" xsd:string property_value: start_dpb "22.0" xsd:float @@ -19691,8 +19680,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000019 ! 22-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000012 ! 3-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "24.0" xsd:float property_value: IAO:0000589 "23-day-old stage (pig)" xsd:string property_value: start_dpb "23.0" xsd:float @@ -19706,8 +19695,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000020 ! 23-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000012 ! 3-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "25.0" xsd:float property_value: IAO:0000589 "24-day-old stage (pig)" xsd:string property_value: start_dpb "24.0" xsd:float @@ -19721,8 +19710,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000021 ! 24-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000012 ! 3-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "26.0" xsd:float property_value: IAO:0000589 "25-day-old stage (pig)" xsd:string property_value: start_dpb "25.0" xsd:float @@ -19736,8 +19725,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000022 ! 25-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000012 ! 3-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "27.0" xsd:float property_value: IAO:0000589 "26-day-old stage (pig)" xsd:string property_value: start_dpb "26.0" xsd:float @@ -19751,8 +19740,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000023 ! 26-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000012 ! 3-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "28.0" xsd:float property_value: IAO:0000589 "27-day-old stage (pig)" xsd:string property_value: start_dpb "27.0" xsd:float @@ -19766,8 +19755,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000024 ! 27-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000013 ! 4-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "29.0" xsd:float property_value: IAO:0000589 "28-day-old stage (pig)" xsd:string property_value: start_dpb "28.0" xsd:float @@ -19781,8 +19770,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000025 ! 28-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000013 ! 4-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "30.0" xsd:float property_value: IAO:0000589 "29-day-old stage (pig)" xsd:string property_value: start_dpb "29.0" xsd:float @@ -19796,8 +19785,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000026 ! 29-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000013 ! 4-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "31.0" xsd:float property_value: IAO:0000589 "30-day-old stage (pig)" xsd:string property_value: start_dpb "30.0" xsd:float @@ -19811,8 +19800,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000027 ! 30-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000013 ! 4-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "32.0" xsd:float property_value: IAO:0000589 "31-day-old stage (pig)" xsd:string property_value: start_dpb "31.0" xsd:float @@ -19826,8 +19815,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000028 ! 31-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000013 ! 4-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "33.0" xsd:float property_value: IAO:0000589 "32-day-old stage (pig)" xsd:string property_value: start_dpb "32.0" xsd:float @@ -19841,8 +19830,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000029 ! 32-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000013 ! 4-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "34.0" xsd:float property_value: IAO:0000589 "33-day-old stage (pig)" xsd:string property_value: start_dpb "33.0" xsd:float @@ -19856,8 +19845,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000030 ! 33-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000013 ! 4-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "35.0" xsd:float property_value: IAO:0000589 "34-day-old stage (pig)" xsd:string property_value: start_dpb "34.0" xsd:float @@ -19871,8 +19860,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000031 ! 34-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000014 ! 5-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "36.0" xsd:float property_value: IAO:0000589 "35-day-old stage (pig)" xsd:string property_value: start_dpb "35.0" xsd:float @@ -19886,8 +19875,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000032 ! 35-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000014 ! 5-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "37.0" xsd:float property_value: IAO:0000589 "36-day-old stage (pig)" xsd:string property_value: start_dpb "36.0" xsd:float @@ -19901,8 +19890,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000033 ! 36-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000014 ! 5-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "38.0" xsd:float property_value: IAO:0000589 "37-day-old stage (pig)" xsd:string property_value: start_dpb "37.0" xsd:float @@ -19916,8 +19905,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000034 ! 37-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000014 ! 5-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "39.0" xsd:float property_value: IAO:0000589 "38-day-old stage (pig)" xsd:string property_value: start_dpb "38.0" xsd:float @@ -19931,8 +19920,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000035 ! 38-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000014 ! 5-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "40.0" xsd:float property_value: IAO:0000589 "39-day-old stage (pig)" xsd:string property_value: start_dpb "39.0" xsd:float @@ -19946,8 +19935,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000036 ! 39-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000014 ! 5-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "41.0" xsd:float property_value: IAO:0000589 "40-day-old stage (pig)" xsd:string property_value: start_dpb "40.0" xsd:float @@ -19961,8 +19950,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000037 ! 40-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000014 ! 5-week-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "42.0" xsd:float property_value: IAO:0000589 "41-day-old stage (pig)" xsd:string property_value: start_dpb "41.0" xsd:float @@ -19975,8 +19964,8 @@ def: "Juvenile stage that refers to a pig which is over 2 and under 3 months old subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000016 ! 7-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_mpb "3.0" xsd:float property_value: end_wpb "12.0" xsd:float property_value: IAO:0000589 "2-month-old stage (pig)" xsd:string @@ -19992,8 +19981,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000017 ! 8-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000039 ! 2-month-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "10.0" xsd:float property_value: IAO:0000589 "9-week-old stage (pig)" xsd:string property_value: start_wpb "9.0" xsd:float @@ -20007,8 +19996,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000040 ! 9-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000039 ! 2-month-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "11.0" xsd:float property_value: IAO:0000589 "10-week-old stage (pig)" xsd:string property_value: start_wpb "10.0" xsd:float @@ -20022,8 +20011,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000041 ! 10-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000039 ! 2-month-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "12.0" xsd:float property_value: IAO:0000589 "11-week-old stage (pig)" xsd:string property_value: start_wpb "11.0" xsd:float @@ -20036,8 +20025,8 @@ def: "Juvenile stage that refers to a pig which is over 3 and under 4 months old subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000042 ! 11-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_mpb "4.0" xsd:float property_value: end_wpb "16.0" xsd:float property_value: IAO:0000589 "3-month-old stage (pig)" xsd:string @@ -20053,8 +20042,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000042 ! 11-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000043 ! 3-month-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "13.0" xsd:float property_value: IAO:0000589 "12-week-old stage (pig)" xsd:string property_value: start_wpb "12.0" xsd:float @@ -20068,8 +20057,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000044 ! 12-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000043 ! 3-month-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "14.0" xsd:float property_value: IAO:0000589 "13-week-old stage (pig)" xsd:string property_value: start_wpb "13.0" xsd:float @@ -20083,8 +20072,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000045 ! 13-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000043 ! 3-month-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "15.0" xsd:float property_value: IAO:0000589 "14-week-old stage (pig)" xsd:string property_value: start_wpb "14.0" xsd:float @@ -20098,8 +20087,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000046 ! 14-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000043 ! 3-month-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "16.0" xsd:float property_value: IAO:0000589 "15-week-old stage (pig)" xsd:string property_value: start_wpb "15.0" xsd:float @@ -20112,8 +20101,8 @@ def: "Juvenile stage that refers to a pig which is over 4 and under 5 months old subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000047 ! 15-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_mpb "5.0" xsd:float property_value: end_wpb "21.0" xsd:float property_value: IAO:0000589 "4-month-old stage (pig)" xsd:string @@ -20129,8 +20118,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000047 ! 15-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000048 ! 4-month-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "17.0" xsd:float property_value: IAO:0000589 "16-week-old stage (pig)" xsd:string property_value: start_wpb "16.0" xsd:float @@ -20144,8 +20133,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000049 ! 16-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000048 ! 4-month-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "18.0" xsd:float property_value: IAO:0000589 "17-week-old stage (pig)" xsd:string property_value: start_wpb "17.0" xsd:float @@ -20159,8 +20148,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000050 ! 17-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000048 ! 4-month-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "19.0" xsd:float property_value: IAO:0000589 "18-week-old stage (pig)" xsd:string property_value: start_wpb "18.0" xsd:float @@ -20174,8 +20163,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000051 ! 18-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000048 ! 4-month-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "20.0" xsd:float property_value: IAO:0000589 "19-week-old stage (pig)" xsd:string property_value: start_wpb "19.0" xsd:float @@ -20189,8 +20178,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000052 ! 19-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000048 ! 4-month-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "21.0" xsd:float property_value: IAO:0000589 "20-week-old stage (pig)" xsd:string property_value: start_wpb "20.0" xsd:float @@ -20203,8 +20192,8 @@ def: "Juvenile stage that refers to a pig which is over 5 and under 6 months old subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000053 ! 20-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_mpb "6.0" xsd:float property_value: end_wpb "25.0" xsd:float property_value: IAO:0000589 "5-month-old stage (pig)" xsd:string @@ -20220,8 +20209,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000053 ! 20-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000054 ! 5-month-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "22.0" xsd:float property_value: IAO:0000589 "21-week-old stage (pig)" xsd:string property_value: start_wpb "21.0" xsd:float @@ -20235,8 +20224,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000055 ! 21-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000054 ! 5-month-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "23.0" xsd:float property_value: IAO:0000589 "22-week-old stage (pig)" xsd:string property_value: start_wpb "22.0" xsd:float @@ -20250,8 +20239,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000056 ! 22-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000054 ! 5-month-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "24.0" xsd:float property_value: IAO:0000589 "23-week-old stage (pig)" xsd:string property_value: start_wpb "23.0" xsd:float @@ -20265,8 +20254,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000057 ! 23-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of SscrDv:0000054 ! 5-month-old stage (pig) +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_wpb "25.0" xsd:float property_value: IAO:0000589 "24-week-old stage (pig)" xsd:string property_value: start_wpb "24.0" xsd:float @@ -20279,8 +20268,8 @@ def: "Juvenile stage that refers to a pig which is over 6 and under 7 months old subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000058 ! 24-week-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_mpb "7.0" xsd:float property_value: IAO:0000589 "6-month-old stage (pig)" xsd:string property_value: start_mpb "6.0" xsd:float @@ -20294,8 +20283,8 @@ def: "Juvenile stage that refers to a pig which is over 7 and under 8 months old subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000059 ! 6-month-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_mpb "8.0" xsd:float property_value: IAO:0000589 "7-month-old stage (pig)" xsd:string property_value: start_mpb "7.0" xsd:float @@ -20308,8 +20297,8 @@ def: "Juvenile stage that refers to a pig which is over 8 and under 9 months old subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000060 ! 7-month-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_mpb "9.0" xsd:float property_value: IAO:0000589 "8-month-old stage (pig)" xsd:string property_value: start_mpb "8.0" xsd:float @@ -20322,8 +20311,8 @@ def: "Juvenile stage that refers to a pig which is over 9 and under 10 months ol subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000061 ! 8-month-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_mpb "10.0" xsd:float property_value: IAO:0000589 "9-month-old stage (pig)" xsd:string property_value: start_mpb "9.0" xsd:float @@ -20336,8 +20325,8 @@ def: "Juvenile stage that refers to a pig which is over 10 and under 11 months o subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000062 ! 9-month-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0034919 ! juvenile stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_mpb "11.0" xsd:float property_value: IAO:0000589 "10-month-old stage (pig)" xsd:string property_value: start_mpb "10.0" xsd:float @@ -20351,8 +20340,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000063 ! 10-month-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_mpb "12.0" xsd:float property_value: IAO:0000589 "11-month-old stage (pig)" xsd:string property_value: start_mpb "11.0" xsd:float @@ -20366,8 +20355,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000064 ! 11-month-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_mpb "24.0" xsd:float property_value: end_ypb "2.0" xsd:float property_value: IAO:0000589 "1-year-old stage (pig)" xsd:string @@ -20383,8 +20372,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000065 ! 1-year-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_ypb "3.0" xsd:float property_value: IAO:0000589 "2-year-old stage (pig)" xsd:string property_value: start_ypb "2.0" xsd:float @@ -20398,8 +20387,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000066 ! 2-year-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_ypb "4.0" xsd:float property_value: IAO:0000589 "3-year-old stage (pig)" xsd:string property_value: start_ypb "3.0" xsd:float @@ -20413,8 +20402,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000067 ! 3-year-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_ypb "5.0" xsd:float property_value: IAO:0000589 "4-year-old stage (pig)" xsd:string property_value: start_ypb "4.0" xsd:float @@ -20428,8 +20417,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000068 ! 4-year-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_ypb "6.0" xsd:float property_value: IAO:0000589 "5-year-old stage (pig)" xsd:string property_value: start_ypb "5.0" xsd:float @@ -20443,8 +20432,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000069 ! 5-year-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_ypb "7.0" xsd:float property_value: IAO:0000589 "6-year-old stage (pig)" xsd:string property_value: start_ypb "6.0" xsd:float @@ -20458,8 +20447,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000070 ! 6-year-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0018241 ! prime adult stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_ypb "8.0" xsd:float property_value: IAO:0000589 "7-year-old stage (pig)" xsd:string property_value: start_ypb "7.0" xsd:float @@ -20474,8 +20463,8 @@ subset: life_stage synonym: "newborn day 0" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by UBERON:0000068 ! embryo stage -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0007221 ! neonate stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "1.0" xsd:float property_value: IAO:0000589 "0-day-old stage (pig)" xsd:string property_value: start_dpb "0.0" xsd:float @@ -20489,8 +20478,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000072 ! 0-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0007221 ! neonate stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "2.0" xsd:float property_value: IAO:0000589 "1-day-old stage (pig)" xsd:string property_value: start_dpb "1.0" xsd:float @@ -20504,8 +20493,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000073 ! 1-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0007221 ! neonate stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "3.0" xsd:float property_value: IAO:0000589 "2-day-old stage (pig)" xsd:string property_value: start_dpb "2.0" xsd:float @@ -20519,8 +20508,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000074 ! 2-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0007221 ! neonate stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "4.0" xsd:float property_value: IAO:0000589 "3-day-old stage (pig)" xsd:string property_value: start_dpb "3.0" xsd:float @@ -20534,8 +20523,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000075 ! 3-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0007221 ! neonate stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "5.0" xsd:float property_value: IAO:0000589 "4-day-old stage (pig)" xsd:string property_value: start_dpb "4.0" xsd:float @@ -20549,8 +20538,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000076 ! 4-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0007221 ! neonate stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "6.0" xsd:float property_value: IAO:0000589 "5-day-old stage (pig)" xsd:string property_value: start_dpb "5.0" xsd:float @@ -20564,8 +20553,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000077 ! 5-day-old stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0007221 ! neonate stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpb "7.0" xsd:float property_value: IAO:0000589 "6-day-old stage (pig)" xsd:string property_value: start_dpb "6.0" xsd:float @@ -20578,8 +20567,8 @@ def: "Prenatal stage that starts at fertilization time and ends at about days 45 comment: We define pig early and late embryonic stages based on fetal growth (see https://www.ncbi.nlm.nih.gov/pubmed/15446468). Pig embryo begins to attach to the uterus on days 13–14 of pregnancy (see https://embryology.med.unsw.edu.au/embryology/index.php/Pig_Development#Normal_Stages). At that stage, this is a 6-somite pig embryo (see https://embryology.med.unsw.edu.au/embryology/index.php/Book_-_Embryology_of_the_Pig_5). subset: life_stage is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0000068 ! embryo stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: end_dpf "45.0" xsd:float property_value: IAO:0000589 "early embryonic stage (pig)" xsd:string property_value: start_dpf "0.0" xsd:float @@ -20593,8 +20582,8 @@ comment: This stage is defined at embryonic day 20 during pig development (see h subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: IAO:0000589 "ridge limb stage (pig)" xsd:string [Term] @@ -20607,8 +20596,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000081 ! ridge limb stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: IAO:0000589 "bud limb stage (pig)" xsd:string [Term] @@ -20621,8 +20610,8 @@ subset: granular_stage subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by SscrDv:0000082 ! bud limb stage (pig) -relationship: only_in_taxon NCBITaxon:9823 ! Sus scrofa relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: RO:0002160 NCBITaxon:9823 ! only in taxon Sus scrofa property_value: IAO:0000589 "paddle limb stage (pig)" xsd:string [Term] @@ -20759,7 +20748,7 @@ xref: WBbt:0003760 xref: Wikipedia:Organ_(anatomy) is_a: UBERON:0010000 ! multicellular anatomical structure relationship: capable_of GO:0008150 ! biological_process -relationship: has_2D_boundary UBERON:0006984 ! anatomical surface +relationship: has_boundary UBERON:0006984 ! anatomical surface relationship: never_in_taxon NCBITaxon:110815 {source="Wikipedia"} relationship: part_of UBERON:0000467 ! anatomical system relationship: present_in_taxon NCBITaxon:33090 @@ -24203,8 +24192,8 @@ synonym: "all stages" BROAD [] is_a: UBERON:0000105 ! life cycle stage is_a: WBls:0000825 ! C. elegans life stage intersection_of: UBERON:0000105 ! life cycle stage -intersection_of: occurs_in NCBITaxon:6237 ! Caenorhabditis -relationship: occurs_in NCBITaxon:6237 ! Caenorhabditis +intersection_of: BFO:0000066 NCBITaxon:6237 ! occurs in Caenorhabditis +relationship: BFO:0000066 NCBITaxon:6237 ! occurs in Caenorhabditis property_value: IAO:0000589 "life cycle stage (worm)" xsd:string [Term] @@ -24229,7 +24218,7 @@ is_a: UBERON:0000108 ! blastula stage is_a: WBls:0000002 ! all stages Ce is_a: WBls:0000813 ! C. elegans life stage occurring during blastula embryo intersection_of: UBERON:0000108 ! blastula stage -intersection_of: occurs_in NCBITaxon:6237 ! Caenorhabditis +intersection_of: BFO:0000066 NCBITaxon:6237 ! occurs in Caenorhabditis relationship: part_of WBls:0000004 ! proliferating embryo Ce property_value: IAO:0000589 "blastula stage (worm)" xsd:string @@ -24244,7 +24233,7 @@ is_a: UBERON:0000109 ! gastrula stage is_a: WBls:0000002 ! all stages Ce is_a: WBls:0000814 ! C. elegans life stage occurring during gastrulation intersection_of: UBERON:0000109 ! gastrula stage -intersection_of: occurs_in NCBITaxon:6237 ! Caenorhabditis +intersection_of: BFO:0000066 NCBITaxon:6237 ! occurs in Caenorhabditis relationship: immediately_preceded_by WBls:0000005 ! blastula embryo Ce relationship: part_of WBls:0000004 ! proliferating embryo Ce property_value: IAO:0000589 "gastrula stage (worm)" xsd:string @@ -24265,7 +24254,7 @@ is_a: WBls:0000002 ! all stages Ce is_a: WBls:0000091 ! Brugia life stage is_a: WBls:0000804 ! C. elegans life stage occurring post embryogenesis intersection_of: UBERON:0000092 ! post-embryonic stage -intersection_of: occurs_in NCBITaxon:6237 ! Caenorhabditis +intersection_of: BFO:0000066 NCBITaxon:6237 ! occurs in Caenorhabditis relationship: immediately_preceded_by WBls:0000092 ! Brugia embryo property_value: IAO:0000589 "post-embryonic stage (worm)" xsd:string created_by: danielaraciti @@ -24284,7 +24273,7 @@ is_a: WBls:0000002 ! all stages Ce is_a: WBls:0000105 ! nematode larval stage is_a: WBls:0000817 ! C. elegans life stage occurring during larval stage intersection_of: UBERON:0004729 ! nematode larval stage -intersection_of: occurs_in NCBITaxon:6237 ! Caenorhabditis +intersection_of: BFO:0000066 NCBITaxon:6237 ! occurs in Caenorhabditis relationship: immediately_preceded_by WBls:0000092 ! Brugia embryo relationship: part_of WBls:0000022 ! postembryonic Ce property_value: IAO:0000589 "nematode larval stage (worm)" xsd:string @@ -24404,7 +24393,7 @@ is_a: WBls:0000002 ! all stages Ce is_a: WBls:0000104 ! nematode adult is_a: WBls:0000816 ! C. elegans life stage occurring during adulthood intersection_of: UBERON:0000066 ! fully formed stage -intersection_of: occurs_in NCBITaxon:6237 ! Caenorhabditis +intersection_of: BFO:0000066 NCBITaxon:6237 ! occurs in Caenorhabditis relationship: immediately_preceded_by WBls:0000023 ! larva Ce relationship: immediately_preceded_by WBls:0000040 ! L4-adult molt Ce relationship: part_of WBls:0000022 ! postembryonic Ce @@ -24472,7 +24461,7 @@ is_a: WBls:0000002 ! all stages Ce is_a: WBls:0000091 ! Brugia life stage is_a: WBls:0000803 ! C. elegans life stage occurring during embryogenesis intersection_of: UBERON:0000068 ! embryo stage -intersection_of: occurs_in NCBITaxon:6237 ! Caenorhabditis +intersection_of: BFO:0000066 NCBITaxon:6237 ! occurs in Caenorhabditis property_value: IAO:0000589 "embryo stage (worm)" xsd:string created_by: danielaraciti creation_date: 2013-11-12T04:48:28Z @@ -24679,7 +24668,7 @@ xref: UBERON:0000071 is_a: UBERON:0000071 ! death stage is_a: XAO:1000000 ! Xenopus developmental stage intersection_of: UBERON:0000071 ! death stage -intersection_of: occurs_in NCBITaxon:8353 ! Xenopus +intersection_of: BFO:0000066 NCBITaxon:8353 ! occurs in Xenopus relationship: immediately_preceded_by XAO:1000095 ! post-embryonic stage property_value: IAO:0000589 "death stage (xenopus)" xsd:string @@ -24691,8 +24680,8 @@ def: "A temporal interval that defines Xenopus life from unfertilized egg to adu subset: life_stage is_a: UBERON:0000105 ! life cycle stage intersection_of: UBERON:0000105 ! life cycle stage -intersection_of: occurs_in NCBITaxon:8353 ! Xenopus -relationship: occurs_in NCBITaxon:8353 ! Xenopus +intersection_of: BFO:0000066 NCBITaxon:8353 ! occurs in Xenopus +relationship: BFO:0000066 NCBITaxon:8353 ! occurs in Xenopus property_value: IAO:0000589 "life cycle stage (xenopus)" xsd:string [Term] @@ -24706,7 +24695,7 @@ xref: UBERON:0000106 is_a: UBERON:0000106 ! zygote stage is_a: XAO:1000094 ! NF stage intersection_of: UBERON:0000106 ! zygote stage -intersection_of: occurs_in NCBITaxon:8353 ! Xenopus +intersection_of: BFO:0000066 NCBITaxon:8353 ! occurs in Xenopus relationship: part_of XAO:1000012 ! embryonic stage property_value: IAO:0000589 "zygote stage (xenopus)" xsd:string @@ -24730,7 +24719,7 @@ xref: UBERON:0000108 is_a: UBERON:0000108 ! blastula stage is_a: XAO:1000012 ! embryonic stage intersection_of: UBERON:0000108 ! blastula stage -intersection_of: occurs_in NCBITaxon:8353 ! Xenopus +intersection_of: BFO:0000066 NCBITaxon:8353 ! occurs in Xenopus relationship: immediately_preceded_by XAO:1000004 ! cleavage stage property_value: IAO:0000589 "blastula stage (xenopus)" xsd:string @@ -24745,7 +24734,7 @@ xref: UBERON:0000107 is_a: UBERON:0000107 ! cleavage stage is_a: XAO:1000012 ! embryonic stage intersection_of: UBERON:0000107 ! cleavage stage -intersection_of: occurs_in NCBITaxon:8353 ! Xenopus +intersection_of: BFO:0000066 NCBITaxon:8353 ! occurs in Xenopus property_value: IAO:0000589 "cleavage stage (xenopus)" xsd:string [Term] @@ -24759,7 +24748,7 @@ xref: UBERON:0000109 is_a: UBERON:0000109 ! gastrula stage is_a: XAO:1000012 ! embryonic stage intersection_of: UBERON:0000109 ! gastrula stage -intersection_of: occurs_in NCBITaxon:8353 ! Xenopus +intersection_of: BFO:0000066 NCBITaxon:8353 ! occurs in Xenopus relationship: immediately_preceded_by XAO:1000003 ! blastula stage property_value: IAO:0000589 "gastrula stage (xenopus)" xsd:string @@ -24774,7 +24763,7 @@ xref: UBERON:0000110 is_a: UBERON:0000110 ! neurula stage is_a: XAO:1000012 ! embryonic stage intersection_of: UBERON:0000110 ! neurula stage -intersection_of: occurs_in NCBITaxon:8353 ! Xenopus +intersection_of: BFO:0000066 NCBITaxon:8353 ! occurs in Xenopus relationship: immediately_preceded_by XAO:1000005 ! gastrula stage property_value: IAO:0000589 "neurula stage (xenopus)" xsd:string @@ -24801,7 +24790,7 @@ xref: UBERON:0009849 is_a: UBERON:0009849 ! tadpole stage is_a: XAO:1000095 ! post-embryonic stage intersection_of: UBERON:0009849 ! tadpole stage -intersection_of: occurs_in NCBITaxon:8353 ! Xenopus +intersection_of: BFO:0000066 NCBITaxon:8353 ! occurs in Xenopus relationship: immediately_preceded_by XAO:1000007 ! tailbud stage property_value: IAO:0000589 "tadpole stage (xenopus)" xsd:string @@ -24816,7 +24805,7 @@ xref: UBERON:0000112 is_a: UBERON:0000112 ! sexually immature stage is_a: XAO:1000095 ! post-embryonic stage intersection_of: UBERON:0000112 ! sexually immature stage -intersection_of: occurs_in NCBITaxon:8353 ! Xenopus +intersection_of: BFO:0000066 NCBITaxon:8353 ! occurs in Xenopus relationship: immediately_preceded_by XAO:1000008 ! tadpole stage property_value: IAO:0000589 "sexually immature stage (xenopus)" xsd:string @@ -24831,7 +24820,7 @@ xref: UBERON:0007232 is_a: UBERON:0007232 ! 2 cell stage is_a: XAO:1000094 ! NF stage intersection_of: UBERON:0007232 ! 2 cell stage -intersection_of: occurs_in NCBITaxon:8353 ! Xenopus +intersection_of: BFO:0000066 NCBITaxon:8353 ! occurs in Xenopus relationship: immediately_preceded_by XAO:1000028 ! NF stage 2- relationship: part_of XAO:1000004 ! cleavage stage property_value: IAO:0000589 "2 cell stage (xenopus)" xsd:string @@ -24846,7 +24835,7 @@ xref: UBERON:0000068 is_a: UBERON:0000068 ! embryo stage is_a: XAO:1000000 ! Xenopus developmental stage intersection_of: UBERON:0000068 ! embryo stage -intersection_of: occurs_in NCBITaxon:8353 ! Xenopus +intersection_of: BFO:0000066 NCBITaxon:8353 ! occurs in Xenopus relationship: immediately_preceded_by XAO:1000082 ! unfertilized egg stage property_value: IAO:0000589 "embryo stage (xenopus)" xsd:string @@ -24861,7 +24850,7 @@ xref: UBERON:0007233 is_a: UBERON:0007233 ! 4 cell stage is_a: XAO:1000094 ! NF stage intersection_of: UBERON:0007233 ! 4 cell stage -intersection_of: occurs_in NCBITaxon:8353 ! Xenopus +intersection_of: BFO:0000066 NCBITaxon:8353 ! occurs in Xenopus relationship: immediately_preceded_by XAO:1000011 ! NF stage 2 (2-cell) relationship: part_of XAO:1000004 ! cleavage stage property_value: IAO:0000589 "4 cell stage (xenopus)" xsd:string @@ -24877,7 +24866,7 @@ xref: UBERON:0007236 is_a: UBERON:0007236 ! 8 cell stage is_a: XAO:1000094 ! NF stage intersection_of: UBERON:0007236 ! 8 cell stage -intersection_of: occurs_in NCBITaxon:8353 ! Xenopus +intersection_of: BFO:0000066 NCBITaxon:8353 ! occurs in Xenopus relationship: immediately_preceded_by XAO:1000013 ! NF stage 3 (4-cell) relationship: part_of XAO:1000004 ! cleavage stage property_value: IAO:0000589 "8 cell stage (xenopus)" xsd:string @@ -25682,7 +25671,7 @@ synonym: "adult frog" EXACT [] is_a: UBERON:0000113 ! post-juvenile adult stage is_a: XAO:1000095 ! post-embryonic stage intersection_of: UBERON:0000113 ! post-juvenile adult stage -intersection_of: occurs_in NCBITaxon:8353 ! Xenopus +intersection_of: BFO:0000066 NCBITaxon:8353 ! occurs in Xenopus relationship: immediately_preceded_by XAO:1000010 ! juvenile frog stage property_value: IAO:0000589 "post-juvenile adult stage (xenopus)" xsd:string created_by: lab @@ -25719,8 +25708,8 @@ xref: ZFIN:ZDB-STAGE-050211-1 xref: ZFS:0100000 is_a: UBERON:0000105 ! life cycle stage intersection_of: UBERON:0000105 ! life cycle stage -intersection_of: occurs_in NCBITaxon:7954 ! Danio -relationship: occurs_in NCBITaxon:7954 ! Danio +intersection_of: BFO:0000066 NCBITaxon:7954 ! occurs in Danio +relationship: BFO:0000066 NCBITaxon:7954 ! occurs in Danio property_value: IAO:0000589 "life cycle stage (ZFS)" xsd:string [Term] @@ -25732,7 +25721,7 @@ xref: ZFIN:ZDB-STAGE-010723-4 is_a: UBERON:0000106 ! zygote stage is_a: ZFS:0000000 ! Unknown intersection_of: UBERON:0000106 ! zygote stage -intersection_of: occurs_in NCBITaxon:7954 ! Danio +intersection_of: BFO:0000066 NCBITaxon:7954 ! occurs in Danio property_value: IAO:0000589 "zygote stage (ZFS)" xsd:string [Term] @@ -25744,7 +25733,7 @@ xref: ZFIN:ZDB-STAGE-010723-15 is_a: UBERON:0007232 ! 2 cell stage is_a: ZFS:0000000 ! Unknown intersection_of: UBERON:0007232 ! 2 cell stage -intersection_of: occurs_in NCBITaxon:7954 ! Danio +intersection_of: BFO:0000066 NCBITaxon:7954 ! occurs in Danio relationship: immediately_preceded_by ZFS:0000001 ! Zygote:1-cell relationship: part_of ZFS:0000046 ! cleavage property_value: IAO:0000589 "2 cell stage (ZFS)" xsd:string @@ -25758,7 +25747,7 @@ xref: ZFIN:ZDB-STAGE-010723-11 is_a: UBERON:0007233 ! 4 cell stage is_a: ZFS:0000000 ! Unknown intersection_of: UBERON:0007233 ! 4 cell stage -intersection_of: occurs_in NCBITaxon:7954 ! Danio +intersection_of: BFO:0000066 NCBITaxon:7954 ! occurs in Danio relationship: immediately_preceded_by ZFS:0000002 ! Cleavage:2-cell relationship: part_of ZFS:0000046 ! cleavage property_value: IAO:0000589 "4 cell stage (ZFS)" xsd:string @@ -25772,7 +25761,7 @@ xref: ZFIN:ZDB-STAGE-010723-33 is_a: UBERON:0007236 ! 8 cell stage is_a: ZFS:0000000 ! Unknown intersection_of: UBERON:0007236 ! 8 cell stage -intersection_of: occurs_in NCBITaxon:7954 ! Danio +intersection_of: BFO:0000066 NCBITaxon:7954 ! occurs in Danio relationship: immediately_preceded_by ZFS:0000003 ! Cleavage:4-cell relationship: part_of ZFS:0000046 ! cleavage property_value: IAO:0000589 "8 cell stage (ZFS)" xsd:string @@ -26176,7 +26165,7 @@ xref: ZFIN:ZDB-STAGE-010723-39 is_a: UBERON:0000113 ! post-juvenile adult stage is_a: ZFS:0000000 ! Unknown intersection_of: UBERON:0000113 ! post-juvenile adult stage -intersection_of: occurs_in NCBITaxon:7954 ! Danio +intersection_of: BFO:0000066 NCBITaxon:7954 ! occurs in Danio relationship: immediately_preceded_by ZFS:0000043 ! Juvenile:Days 45-89 property_value: IAO:0000589 "post-juvenile adult stage (ZFS)" xsd:string @@ -26188,7 +26177,7 @@ subset: life_stage is_a: UBERON:0000108 ! blastula stage is_a: ZFS:0000000 ! Unknown intersection_of: UBERON:0000108 ! blastula stage -intersection_of: occurs_in NCBITaxon:7954 ! Danio +intersection_of: BFO:0000066 NCBITaxon:7954 ! occurs in Danio relationship: immediately_preceded_by ZFS:0000046 ! cleavage property_value: IAO:0000589 "blastula stage (ZFS)" xsd:string @@ -26200,7 +26189,7 @@ subset: life_stage is_a: UBERON:0000107 ! cleavage stage is_a: ZFS:0000000 ! Unknown intersection_of: UBERON:0000107 ! cleavage stage -intersection_of: occurs_in NCBITaxon:7954 ! Danio +intersection_of: BFO:0000066 NCBITaxon:7954 ! occurs in Danio property_value: IAO:0000589 "cleavage stage (ZFS)" xsd:string [Term] @@ -26211,7 +26200,7 @@ subset: life_stage is_a: UBERON:0000109 ! gastrula stage is_a: ZFS:0000000 ! Unknown intersection_of: UBERON:0000109 ! gastrula stage -intersection_of: occurs_in NCBITaxon:7954 ! Danio +intersection_of: BFO:0000066 NCBITaxon:7954 ! occurs in Danio relationship: immediately_preceded_by ZFS:0000045 ! blastula property_value: IAO:0000589 "gastrula stage (ZFS)" xsd:string @@ -26223,7 +26212,7 @@ subset: life_stage is_a: UBERON:0000069 ! larval stage is_a: ZFS:0000000 ! Unknown intersection_of: UBERON:0000069 ! larval stage -intersection_of: occurs_in NCBITaxon:7954 ! Danio +intersection_of: BFO:0000066 NCBITaxon:7954 ! occurs in Danio relationship: immediately_preceded_by ZFS:0007000 ! hatching property_value: IAO:0000589 "larval stage (ZFS)" xsd:string @@ -26243,7 +26232,7 @@ subset: life_stage is_a: UBERON:0004707 ! pharyngula stage is_a: ZFS:0000000 ! Unknown intersection_of: UBERON:0004707 ! pharyngula stage -intersection_of: occurs_in NCBITaxon:7954 ! Danio +intersection_of: BFO:0000066 NCBITaxon:7954 ! occurs in Danio relationship: immediately_preceded_by ZFS:0000049 ! segmentation property_value: IAO:0000589 "pharyngula stage (ZFS)" xsd:string @@ -26255,7 +26244,7 @@ subset: life_stage is_a: UBERON:0000112 ! sexually immature stage is_a: ZFS:0000000 ! Unknown intersection_of: UBERON:0000112 ! sexually immature stage -intersection_of: occurs_in NCBITaxon:7954 ! Danio +intersection_of: BFO:0000066 NCBITaxon:7954 ! occurs in Danio relationship: immediately_preceded_by ZFS:0000048 ! larva property_value: IAO:0000589 "sexually immature stage (ZFS)" xsd:string @@ -26270,15 +26259,19 @@ created_by: yvonne creation_date: 2014-11-05T08:33:09Z [Typedef] -id: 2D_boundary_of -name: 2D boundary of -def: "a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity" [] -xref: RO:0002000 -property_value: editor_note "A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts." xsd:string -property_value: editor_note "Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape." xsd:string -property_value: example_of_usage "the surface of my skin is a 2D boundary of my body" xsd:string -is_a: mereotopologically_related_to ! mereotopologically related to -inverse_of: has_2D_boundary ! has 2D boundary +id: BFO:0000066 +name: occurs in +def: "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" [] +comment: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +property_value: seeAlso "https://wiki.geneontology.org/Occurs_in" xsd:anyURI +domain: BFO:0000003 ! occurrent +range: BFO:0000004 ! independent continuant +holds_over_chain: part_of BFO:0000066 +inverse_of: contains_process ! contains process +transitive_over: part_of ! part of [Typedef] id: BSPO:0001102 @@ -26317,377 +26310,1233 @@ id: PORO:0000946 name: variant of [Typedef] -id: aboral_to -name: aboral to -namespace: spatial -namespace: uberon -def: "nearer to the aboral opening of the organism, on the oral-aboral axis." [BSPO:cjm] -xref: BSPO:0015202 -is_transitive: true +id: RO:0000052 +name: characteristic of +def: "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence." [] +comment: Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing. +property_value: example_of_usage "this fragility is a characteristic of this vase" xsd:string +property_value: example_of_usage "this red color is a characteristic of this apple" xsd:string +is_functional: true +is_a: RO:0002314 ! characteristic of part of +inverse_of: RO:0000053 ! has characteristic [Typedef] -id: action_notes -name: actions_notes -namespace: uberon -def: "Notes on how instances of this class functon biomechanically." [https://orcid.org/0000-0002-6601-2165] -xref: UBPROP:0000014 -property_value: editor_note "This annotation property may be replaced with an annotation property from an external ontology such as IAO" xsd:string -is_metadata_tag: true +id: RO:0000053 +name: has characteristic +def: "Inverse of characteristic_of" [] +property_value: editor_note "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." xsd:string +property_value: example_of_usage "this apple is bearer of this red color" xsd:string +property_value: example_of_usage "this vase is bearer of this fragility" xsd:string +range: BFO:0000020 ! specifically dependent continuant +is_inverse_functional: true [Typedef] -id: acts_on_population_of -name: acts on population of -def: "p acts on population of c iff c' is a collection, has members of type c, and p has participant c" [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0012003 -is_a: has_participant ! has participant -created_by: https://orcid.org/0000-0003-1813-6857 -creation_date: 2020-06-08T17:21:33Z +id: RO:0000057 +name: has participant +def: "a relation between a process and a continuant, in which the continuant is somehow involved in the process" [] +property_value: editor_note "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." xsd:string +property_value: example_of_usage "this blood coagulation has participant this blood clot" xsd:string +property_value: example_of_usage "this investigation has participant this investigator" xsd:string +property_value: example_of_usage "this process has participant this input material (or this output material)" xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000002 ! continuant +holds_over_chain: has_part RO:0000057 [Typedef] -id: acts_upstream_of -name: acts upstream of -def: "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term -xref: RO:0002263 -property_value: example_of_usage "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." xsd:string -property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of -is_a: acts_upstream_of_or_within ! acts upstream of or within +id: RO:0000080 +name: quality of +def: "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence" [] +comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. +property_value: editor_note "A quality inheres in its bearer at all times for which the quality exists." xsd:string +property_value: example_of_usage "this red color is a quality of this apple" xsd:string +is_a: RO:0000052 ! characteristic of +inverse_of: has_quality ! has quality [Typedef] -id: acts_upstream_of_or_within -name: acts upstream of or within -def: "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term -synonym: "affects" RELATED [] -xref: RO:0002264 -property_value: example_of_usage "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." xsd:string -property_value: seeAlso "https://wiki.geneontology.org/Acts_upstream_of_or_within" xsd:anyURI -is_a: causal_agent_in_process ! causal agent in process +id: RO:0000081 +name: role of +def: "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence" [] +comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. +property_value: editor_note "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists." xsd:string +property_value: example_of_usage "this investigator role is a role of this person" xsd:string +is_a: RO:0000052 ! characteristic of +inverse_of: RO:0000087 ! has role [Typedef] -id: adjacent_to -name: adjacent to -namespace: spatial -namespace: uberon -def: "x adjacent to y if and only if x and y share a boundary." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002220 -property_value: editor_note "This relation acts as a join point with BSPO" xsd:string -property_value: example_of_usage "A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts." xsd:string {seeAlso="issuecomment-218584934"} -property_value: example_of_usage "The epidermis layer of a vertebrate is adjacent to the dermis." xsd:string -property_value: example_of_usage "The plasma membrane of a cell is adjacent to the cytoplasm, and also to the cell lumen which the cytoplasm occupies." xsd:string -property_value: example_of_usage "The skin of the forelimb is adjacent to the skin of the torso if these are considered anatomical subdivisions with a defined border. Otherwise a relation such as continuous_with would be used." xsd:string +id: RO:0000087 +name: has role +def: "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence" [] +property_value: editor_note "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists." xsd:string +property_value: example_of_usage "this person has role this investigator role (more colloquially: this person has this role of investigator)" xsd:string domain: BFO:0000004 ! independent continuant -range: BFO:0000004 ! independent continuant -is_symmetric: true -is_a: spatially_disjoint_from ! spatially disjoint from +is_a: RO:0000053 ! has characteristic [Typedef] -id: ambiguous_for_taxon -name: ambiguous for taxon -name: ambiguous_for_taxon -namespace: uberon -def: "S ambiguous_for_taxon T if the class S does not have a clear referent in taxon T. An example would be the class 'manual digit 1', which encompasses a homology hypotheses that is accepted for some species (e.g. human and mouse), but does not have a clear referent in Aves - the referent is dependent on the hypothesis embraced, and also on the ontogenetic stage." [PHENOSCPAE:asilomar_mtg] -def: "S ambiguous_for_taxon T if the class S does not have a clear referent in taxon T. An example would be the class 'manual digit 1', which encompasses a homology hypotheses that is accepted for some species (e.g. human and mouse), but does not have a clear referent in Aves - the referent is dependent on the hypothesis embraced, and also on the ontogenetic stage. [PHENOSCPAE:asilomar_mtg]" [] -xref: RO:0002173 -property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints -is_metadata_tag: true -is_class_level: true +id: RO:0002000 +name: 2D boundary of +def: "a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity" [] +property_value: editor_note "A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts." xsd:string +property_value: editor_note "Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape." xsd:string +property_value: example_of_usage "the surface of my skin is a 2D boundary of my body" xsd:string +is_a: RO:0002323 ! mereotopologically related to +inverse_of: has_boundary ! has 2D boundary [Typedef] -id: anastomoses_with -name: anastomoses with -namespace: uberon +id: RO:0002006 +name: has synaptic terminal of +is_a: overlaps ! overlaps +inverse_of: RO:0002130 ! has synaptic terminal in [Typedef] -id: anterior_to -name: anterior to -namespace: spatial -namespace: uberon -def: "x anterior to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail." [BSPO:cjm] -synonym: "rostral_to" EXACT [] -xref: BSPO:0000096 -property_value: seeAlso FBcv:0000039 -property_value: seeAlso FBql:00005863 -is_transitive: true -inverse_of: posterior_to ! posterior to +id: RO:0002021 +name: occurs across +def: "A relationship between a process and a barrier, where the process occurs in a region spanning the barrier. For cellular processes the barrier is typically a membrane. Examples include transport across a membrane and membrane depolarization." [] +is_a: RO:0002479 ! has part that occurs in +created_by: https://orcid.org/0000-0002-7073-9172 +creation_date: 2017-07-20T17:19:37Z [Typedef] -id: anteriorly_connected_to -name: anteriorly connected to -namespace: uberon -def: "x anteriorly_connected_to y iff the anterior part of x is connected to y. i.e. x connected_to y and x posterior_to y." [http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern] -is_a: connected_to ! connected to -is_a: posterior_to ! posterior to -is_a: transitively_anteriorly_connected_to ! transitively anteriorly connected to +id: RO:0002081 +name: before or simultaneous with +comment: Primitive instance level timing relation between events +subset: ro-eco +is_a: RO:0002222 ! temporally related to [Typedef] -id: appendage_segment_number -name: appendage segment number -namespace: uberon -def: "x appendage_segment_number N if and only if (i) x is a appendage_segment, and (ii) x is appendage_segment number N in a series of appendage_segments repeated along an proximo-distal axis, with appendage_segment_number 1 being the proximalmost appendage_segment (in tetrapods this would be the stylopod, as we do not classify girdles as appendage segments)." [https://orcid.org/0000-0002-6601-2165] -comment: Examples: in dropsphila coxa=1, trochanter=2, femur=3, tibia=4, tarsal segments 1-5=5-9, pretarsus=10 -xref: UBPROP:0000110 -property_value: is_count_of UBERON:0010758 -property_value: preceding_element_is BSPO:0000100 -is_metadata_tag: true +id: RO:0002086 +name: ends after +comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X) +subset: ro-eco +is_transitive: true +is_a: RO:0002222 ! temporally related to [Typedef] -id: approximately_perpendicular_to -name: approximately perpendicular to -namespace: spatial -def: "Crosses at an angle that is 90 degrees, or close to 90 degrees. In any non-linear organism, the main axes are rarely perpendicular when taken through the organism as a whole." [BSPO:cjm] -xref: BSPO:0000104 +id: RO:0002090 +name: immediately precedes +comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y) +subset: ro-eco +holds_over_chain: ends_with starts_with +is_a: precedes ! precedes [Typedef] -id: attaches_to -name: attached to -namespace: uberon -def: "a is attached to b if and only if a and b are discrete objects or object parts, and there are physical connections between a and b such that a force pulling a will move b, or a force pulling b will move a" [] -subset: ro-eco -xref: RO:0002371 -is_symmetric: true -is_a: attaches_to_part_of ! attached to part of -is_a: connected_to ! connected to +id: RO:0002100 +name: has soma location +def: "Relation between a neuron and a material anatomical entity that its soma is part of." [] +domain: CL:0000540 ! neuron +range: UBERON:0000465 ! material anatomical entity +is_a: overlaps ! overlaps +transitive_over: part_of ! part of [Typedef] -id: attaches_to_part_of -name: attached to part of -namespace: uberon -def: "a is attached to part of b if a is attached to b, or a is attached to some p, where p is part of b." [] -xref: RO:0002177 -domain: UBERON:0000061 ! anatomical structure -range: UBERON:0000061 ! anatomical structure -is_a: biomechanically_related_to ! biomechanically related to -is_a: mereotopologically_related_to ! mereotopologically related to +id: RO:0002104 +name: has plasma membrane part +def: "Holds between a cell c and a protein complex or protein p if and only if that cell has as part a plasma_membrane[GO:0005886], and that plasma membrane has p as part." [] +property_value: example_of_usage "Every B cell[CL_0000236] has plasma membrane part some immunoglobulin complex[GO_0019814]" xsd:string +domain: UBERON:0000465 ! material anatomical entity +range: UBERON:0000465 ! material anatomical entity +is_a: has_part ! has part [Typedef] -id: axiom_lost_from_external_ontology -name: axiom_lost_from_external_ontology -namespace: uberon -def: "A textual description of an axiom loss in this ontology compared to an external ontology." [https://orcid.org/0000-0002-6601-2165] -comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO -xref: UBPROP:0000002 -is_metadata_tag: true +id: RO:0002120 +name: synapsed to +def: " Relation between a neuron and an anatomical structure (including cells) that it chemically synapses to.\n " [] +comment: N1 synapsed_to some N2 \nExpands to:\nN1 SubclassOf ( \n has_part some (\n ‘pre-synaptic membrane ; GO:0042734’ that part_of some ( \n ‘synapse ; GO:0045202’ that has_part some (\n ‘post-synaptic membrane ; GO:0045211’ that part_of some N2)))) +is_a: RO:0002486 ! sends output to [Typedef] -id: before_or_simultaneous_with -name: before or simultaneous with -comment: Primitive instance level timing relation between events -subset: ro-eco -xref: RO:0002081 -is_a: temporally_related_to ! temporally related to +id: RO:0002130 +name: has synaptic terminal in +def: "A general relation between a neuron and some structure in which it either chemically synapses to some target or in which it receives (chemical) synaptic input." [] +domain: CL:0000540 ! neuron +is_a: overlaps ! overlaps +transitive_over: part_of ! part of [Typedef] -id: biomechanically_related_to -name: biomechanically related to -def: "A relation that holds between elements of a musculoskeletal system or its analogs." [] -xref: RO:0002567 -property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the biomechanical processes." xsd:string -domain: UBERON:0000061 ! anatomical structure -range: UBERON:0000061 ! anatomical structure -is_a: functionally_related_to ! functionally related to +id: RO:0002156 +name: derived by descent from +def: "d derived_by_descent_from a if d is specified by some genetic program that is sequence-inherited-from a genetic program that specifies a." [] +is_transitive: true +is_a: RO:0002320 ! evolutionarily related to +inverse_of: RO:0002157 ! has derived by descendant [Typedef] -id: bounding_layer_of -name: bounding layer of -namespace: uberon -def: "X outer_layer_of Y iff:\n. X :continuant that bearer_of some PATO:laminar\n. X part_of Y\n. exists Z :surface\n. X has_boundary Z\n. Z boundary_of Y\n\nhas_boundary: http://purl.obolibrary.org/obo/RO_0002002\nboundary_of: http://purl.obolibrary.org/obo/RO_0002000" [] -comment: A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane. -subset: ro-eco -xref: RO:0002007 -range: BFO:0000040 ! material entity -is_a: part_of ! part of +id: RO:0002157 +name: has derived by descendant +def: "inverse of derived by descent from" [] +subset: RO:0002259 +is_transitive: true +is_a: RO:0002320 ! evolutionarily related to [Typedef] -id: branching_part_of -name: branching part of -namespace: uberon -def: "x is a branching part of y if and only if x is part of y and x is connected directly or indirectly to the main stem of y" [] +id: RO:0002160 +name: only in taxon +def: "x only in taxon y if and only if x is in taxon y, and there is no other organism z such that y!=z a and x is in taxon z." [] +property_value: editor_note "The original intent was to treat this as a macro that expands to 'in taxon' only ?Y - however, this is not necessary if we instead have supplemental axioms that state that each pair of sibling tax have a disjointness axiom using the 'in taxon' property - e.g.\n\n 'in taxon' some Eukaryota DisjointWith 'in taxon' some Eubacteria" xsd:string +property_value: example_of_usage "lactation SubClassOf 'only in taxon' some 'Mammalia'" xsd:string +property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints +is_a: in_taxon ! in taxon + +[Typedef] +id: RO:0002163 +name: spatially disjoint from +def: "A is spatially_disjoint_from B if and only if they have no parts in common" [] subset: ro-eco -xref: RO:0002380 -property_value: example_of_usage "In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, B1 is a (direct) branching part of T. B1-1, B1-2, and B1-3 are also branching parts of T, but these are considered indirect branching parts as they do not directly connect to the main stem S" xsd:string -property_value: seeAlso "FMA:85994" xsd:string -property_value: seeAlso https://github.com/obophenotype/uberon/issues/2212 -is_a: in_branching_relationship_with ! in branching relationship with -is_a: part_of ! part of -inverse_of: has_branching_part ! has branching part +property_value: curator_notes "Note that it would be possible to use the relation to label the relationship between a near infinite number of structures - between the rings of saturn and my left earlobe. The intent is that this is used for parsiomoniously for disambiguation purposes - for example, between siblings in a jointly exhaustive pairwise disjointness hierarchy" xsd:string +property_value: editor_note "There are two ways to encode this as a shortcut relation. The other possibility to use an annotation assertion between two classes, and expand this to a disjointness axiom. " xsd:string +property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern" xsd:anyURI +is_a: RO:0002323 ! mereotopologically related to [Typedef] -id: by_means -name: by_means +id: RO:0002206 +name: expressed in +def: "x expressed in y if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and the transcription of x is part of the gene expression process (iii) x is a mature gene product such as a protein, and x was translated or otherwise processes from a transcript that was transcribed as part of this gene expression process" [] +property_value: example_of_usage "'neural crest cell' SubClassOf expresses some 'Wnt1 gene'" xsd:string +domain: BFO:0000002 ! continuant +range: UBERON:0000465 ! material anatomical entity +is_a: RO:0002330 ! genomically related to +inverse_of: RO:0002292 ! expresses +transitive_over: part_of ! part of [Typedef] -id: capable_of -name: capable of -namespace: uberon -def: "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. " [] -subset: ro-eco -xref: RO:0002215 -property_value: curator_notes "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." xsd:string -property_value: example_of_usage "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" xsd:string -property_value: example_of_usage "osteoclast SubClassOf 'capable of' some 'bone resorption'" xsd:string -domain: BFO:0000004 ! independent continuant +id: RO:0002210 +name: directly develops into +def: "inverse of directly develops from" [] +subset: RO:0002259 +is_a: develops_into ! develops into + +[Typedef] +id: RO:0002211 +name: regulates +name: regulates (processual) +def: "p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +property_value: curator_notes "Regulation precludes parthood; the regulatory process may not be within the regulated process." xsd:string +domain: BFO:0000015 ! process range: BFO:0000015 ! process -is_a: capable_of_part_of ! capable of part of +holds_over_chain: ends_with RO:0002211 +is_transitive: true +is_a: RO:0002411 ! causally upstream of +inverse_of: RO:0002334 ! regulated by [Typedef] -id: capable_of_negatively_regulating -name: capable of negatively regulating -def: "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p." [] -xref: RO:0002597 -holds_over_chain: capable_of negatively_regulates -is_a: capable_of_regulating ! capable of regulating +id: RO:0002212 +name: negatively regulates +def: "p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +holds_over_chain: ends_with RO:0002212 +is_a: RO:0002211 ! regulates (processual) +is_a: RO:0002305 ! causally upstream of, negative effect +inverse_of: RO:0002335 ! negatively regulated by [Typedef] -id: capable_of_part_of -name: capable of part of -namespace: uberon -def: "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p." [] -xref: RO:0002216 -property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/reflexivity/ -is_a: causal_agent_in_process ! causal agent in process -is_a: functionally_related_to ! functionally related to +id: RO:0002213 +name: positively regulates +def: "p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +holds_over_chain: ends_with RO:0002213 +holds_over_chain: RO:0002212 RO:0002212 +is_transitive: true +is_a: RO:0002211 ! regulates (processual) +is_a: RO:0002304 ! causally upstream of, positive effect +inverse_of: RO:0002336 ! positively regulated by [Typedef] -id: capable_of_positively_regulating -name: capable of positively regulating -def: "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p." [] -xref: RO:0002598 -property_value: example_of_usage "renin -> arteriolar smooth muscle contraction" xsd:string -holds_over_chain: capable_of positively_regulates -is_a: capable_of_regulating ! capable of regulating +id: RO:0002222 +name: temporally related to +comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. +subset: ro-eco +property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent [Typedef] -id: capable_of_regulating -name: capable of regulating -def: "Holds between c and p if and only if c is capable of some activity a, and a regulates p." [] -xref: RO:0002596 -property_value: example_of_usage "pyrethroid -> growth" xsd:string -holds_over_chain: capable_of regulates -is_a: causal_agent_in_process ! causal agent in process +id: RO:0002231 +name: has start location +def: "x 'has starts location' y if and only if there exists some process z such that x 'starts with' z and z 'occurs in' y" [] +subset: ro-eco +domain: BFO:0000015 ! process +range: BFO:0000004 ! independent continuant +holds_over_chain: starts_with BFO:0000066 +is_a: RO:0002479 ! has part that occurs in [Typedef] -id: causal_agent_in_process -name: causal agent in process -def: "A relationship between a material entity and a process where the material entity has some causal role that influences the process" [] -xref: RO:0002500 -is_a: causal_relation_between_material_entity_and_a_process ! causal relation between material entity and a process -inverse_of: process_has_causal_agent ! process has causal agent +id: RO:0002232 +name: has end location +def: "x 'has end location' y if and only if there exists some process z such that x 'ends with' z and z 'occurs in' y" [] +subset: ro-eco +domain: BFO:0000015 ! process +range: BFO:0000004 ! independent continuant +holds_over_chain: ends_with BFO:0000066 +is_a: RO:0002479 ! has part that occurs in [Typedef] -id: causal_relation_between_material_entity_and_a_process -name: causal relation between material entity and a process -def: "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity." [] -xref: RO:0002595 -property_value: editor_note "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string -domain: BFO:0000040 ! material entity -range: BFO:0000015 ! process -is_a: causally_related_to ! causally related to +id: RO:0002233 +name: has input +def: "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +subset: ro-eco +property_value: seeAlso "https://wiki.geneontology.org/Has_input" xsd:anyURI +domain: BFO:0000015 ! process +holds_over_chain: starts_with RO:0002233 +is_a: RO:0000057 ! has participant +inverse_of: input_of ! input of [Typedef] -id: causal_relation_between_processes -name: causal relation between processes -def: "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q." [] -xref: RO:0002501 -property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string -domain: BFO:0000003 ! occurrent -range: BFO:0000003 ! occurrent -is_a: causally_related_to ! causally related to +id: RO:0002234 +name: has output +def: "p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +subset: ro-eco +property_value: seeAlso "https://wiki.geneontology.org/Has_output" xsd:anyURI +holds_over_chain: ends_with RO:0002234 +is_a: RO:0000057 ! has participant +inverse_of: output_of ! output of [Typedef] -id: causally_downstream_of -name: causally downstream of -def: "inverse of upstream of" [] -xref: RO:0002404 -is_a: causally_downstream_of_or_within ! causally downstream of or within -is_a: preceded_by ! preceded by -inverse_of: causally_upstream_of ! causally upstream of +id: RO:0002253 +name: has connecting branch +def: "inverse of connecting branch of" [] +subset: RO:0002259 +is_a: RO:0002375 ! in branching relationship with [Typedef] -id: causally_downstream_of_or_within -name: causally downstream of or within -def: "inverse of causally upstream of or within" [] +id: RO:0002255 +name: developmentally contributes to +def: "inverse of has developmental contribution from" [] subset: RO:0002259 -xref: RO:0002427 -is_transitive: true -is_a: causal_relation_between_processes ! causal relation between processes +holds_over_chain: develops_into part_of +is_a: has_potential_to_developmentally_contribute_to ! has potential to developmentally contribute to +is_a: RO:0002286 ! developmentally succeeded by [Typedef] -id: causally_related_to -name: causally related to -def: "relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause." [https://en.wikipedia.org/wiki/Causality] -xref: RO:0002410 -property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string -property_value: editor_note "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative?\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." xsd:string +id: RO:0002257 +name: developmentally induces +def: "Inverse of developmentally induced by" [] +is_a: RO:0002286 ! developmentally succeeded by +is_a: RO:0002386 ! has potential to developmentally induce [Typedef] -id: causally_upstream_of -name: causally upstream of -def: "p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q." [] +id: RO:0002258 +name: developmentally preceded by +def: "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p" [] +comment: This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from +property_value: curator_notes "In general you should not use this relation to make assertions - use one of the more specific relations below this one" xsd:string +property_value: editor_note "false" xsd:boolean +domain: BFO:0000002 ! continuant +range: BFO:0000002 ! continuant +is_a: RO:0002324 ! developmentally related to +inverse_of: RO:0002286 ! developmentally succeeded by + +[Typedef] +id: RO:0002263 +name: acts upstream of +def: "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term +property_value: example_of_usage "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." xsd:string +property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of +is_a: RO:0002264 ! acts upstream of or within + +[Typedef] +id: RO:0002264 +name: acts upstream of or within +def: "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term +synonym: "affects" RELATED [] +property_value: example_of_usage "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." xsd:string +property_value: seeAlso "https://wiki.geneontology.org/Acts_upstream_of_or_within" xsd:anyURI +is_a: RO:0002500 ! causal agent in process + +[Typedef] +id: RO:0002286 +name: developmentally succeeded by +def: "Inverse of developmentally preceded by" [] +is_a: RO:0002384 ! has developmental potential involving + +[Typedef] +id: RO:0002287 +name: part of developmental precursor of +property_value: example_of_usage "'hypopharyngeal eminence' SubClassOf 'part of precursor of' some tongue" xsd:string +holds_over_chain: part_of RO:0002210 +is_a: RO:0002286 ! developmentally succeeded by + +[Typedef] +id: RO:0002292 +name: expresses +def: "y expresses x if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and x was transcribed from a gene as part of the gene expression process (iii) x is a mature gene product (protein or RNA), and x was translated or otherwise processed from a transcript that was transcribed as part of the gene expression process." [] +is_a: RO:0002330 ! genomically related to + +[Typedef] +id: RO:0002295 +name: results in developmental progression of +def: "p results in the developmental progression of s iff p is a developmental process and s is an anatomical entity and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss)." [] +property_value: editor_note "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint." xsd:string +property_value: seeAlso Ontology:extensions +domain: GO:0008150 ! biological_process +range: UBERON:0001062 ! anatomical entity +is_a: RO:0002324 ! developmentally related to + +[Typedef] +id: RO:0002296 +name: results in development of +def: "p 'results in development of' c if and only if p is a developmental process and p results in the state of c changing from its initial state as a primordium or anlage through its mature state and to its final state." [] subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002411 -is_transitive: true -is_a: causally_upstream_of_or_within ! causally upstream of or within -is_a: precedes ! precedes +property_value: example_of_usage "every flower development (GO:0009908) results in development of some flower (PO:0009046)" xsd:string +is_a: RO:0002295 ! results in developmental progression of +is_a: RO:0040036 ! results in changes to anatomical or cellular structure [Typedef] -id: causally_upstream_of,_negative_effect -name: causally upstream of, negative effect -def: "p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q." [] +id: RO:0002297 +name: results in formation of anatomical entity +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +property_value: example_of_usage "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists." xsd:string +property_value: example_of_usage "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)" xsd:string +is_a: RO:0002234 ! has output +is_a: RO:0002295 ! results in developmental progression of +inverse_of: RO:0002354 ! formed as result of + +[Typedef] +id: RO:0002298 +name: results in morphogenesis of +def: "The relationship that links an entity with the process that results in the formation and shaping of that entity over time from an immature to a mature state." [] subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002305 -property_value: seeAlso https://wiki.geneontology.org/Causally_upstream_of,_negative_effect -is_a: causally_upstream_of ! causally upstream of -is_a: causally_upstream_of_or_within,_negative_effect ! causally upstream of or within, negative effect +property_value: example_of_usage "an annotation of gene X to cell morphogenesis with results_in_morphogenesis_of CL:0000540 (neuron) means that at the end of the process an input neuron has attained its shape." xsd:string +property_value: example_of_usage "tongue morphogenesis (GO:0043587) results in morphogenesis of tongue (UBERON:0001723)" xsd:string +is_a: RO:0002295 ! results in developmental progression of +is_a: RO:0040036 ! results in changes to anatomical or cellular structure + +[Typedef] +id: RO:0002299 +name: results in maturation of +def: "The relationship that links an entity with a process that results in the progression of the entity over time that is independent of changes in it's shape and results in an end point state of that entity." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +property_value: example_of_usage " an annotation of gene X to cell maturation with results_in_maturation_of CL:0000057 (fibroblast) means that the fibroblast is mature at the end of the process" xsd:string +property_value: example_of_usage "bone maturation (GO:0070977) results_in_maturation_of bone (UBERON:0001474)" xsd:string +is_a: RO:0002295 ! results in developmental progression of +is_a: RO:0040036 ! results in changes to anatomical or cellular structure [Typedef] -id: causally_upstream_of,_positive_effect +id: RO:0002304 name: causally upstream of, positive effect def: "p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q." [] comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002304 property_value: seeAlso https://wiki.geneontology.org/Causally_upstream_of,_positive_effect -is_a: causally_upstream_of ! causally upstream of -is_a: causally_upstream_of_or_within,_positive_effect ! causally upstream of or within, positive effect +is_a: RO:0002411 ! causally upstream of +is_a: RO:0004047 ! causally upstream of or within, positive effect [Typedef] -id: causally_upstream_of_or_within -name: causally upstream of or within -def: "p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q." [] -synonym: "affects" RELATED [] -xref: RO:0002418 -property_value: editor_note "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" xsd:string -is_transitive: true -is_a: causal_relation_between_processes ! causal relation between processes -inverse_of: causally_downstream_of_or_within ! causally downstream of or within +id: RO:0002305 +name: causally upstream of, negative effect +def: "p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_gocam +property_value: seeAlso https://wiki.geneontology.org/Causally_upstream_of,_negative_effect +is_a: RO:0002411 ! causally upstream of +is_a: RO:0004046 ! causally upstream of or within, negative effect [Typedef] -id: causally_upstream_of_or_within,_negative_effect -name: causally upstream of or within, negative effect -xref: RO:0004046 +id: RO:0002314 +name: characteristic of part of +def: "q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w." [] +property_value: editor_note "Because part_of is transitive, inheres in is a sub-relation of characteristic of part of" xsd:string +property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/reflexivity/ +is_a: RO:0002502 ! depends on +transitive_over: part_of ! part of + +[Typedef] +id: RO:0002315 +name: results in acquisition of features of +def: "The relationship that links a specified entity with the process that results in an unspecified entity acquiring the features and characteristics of the specified entity" [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +property_value: example_of_usage "an annotation of gene X to cell differentiation with results_in_maturation_of CL:0000057 (fibroblast) means that at the end of the process the input cell that did not have features of a fibroblast, now has the features of a fibroblast." xsd:string +range: UBERON:0000061 ! anatomical structure +is_a: RO:0002295 ! results in developmental progression of +is_a: RO:0040036 ! results in changes to anatomical or cellular structure + +[Typedef] +id: RO:0002320 +name: evolutionarily related to +def: "A relationship that holds via some environmental process" [] +property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the process of evolution." xsd:string + +[Typedef] +id: RO:0002321 +name: ecologically related to +def: "A relationship that is mediated in some way by the environment or environmental feature (ENVO:00002297)" [] +subset: ro-eco +property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving ecological interactions" xsd:string +property_value: editor_note "Awaiting class for domain/range constraint, see: https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6" xsd:string + +[Typedef] +id: RO:0002323 +name: mereotopologically related to +def: "A mereological relationship or a topological relationship" [] +property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" xsd:string + +[Typedef] +id: RO:0002324 +name: developmentally related to +def: "A relationship that holds between entities participating in some developmental process (GO:0032502)" [] +property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" xsd:string + +[Typedef] +id: RO:0002329 +name: part of structure that is capable of +def: "this relation holds between c and p when c is part of some c', and c' is capable of p." [] +is_a: functionally_related_to ! functionally related to + +[Typedef] +id: RO:0002330 +name: genomically related to +def: "holds between two entities when some genome-level process such as gene expression is involved. This includes transcriptional, spliceosomal events. These relations can be used between either macromolecule entities (such as regions of nucleic acid) or between their abstract informational counterparts." [] +property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving the genome of an organism" xsd:string +domain: BFO:0000002 ! continuant +range: BFO:0000002 ! continuant + +[Typedef] +id: RO:0002332 +name: regulates levels of +def: "p regulates levels of c if p regulates some amount (PATO:0000070) of c" [] +property_value: example_of_usage "every cellular sphingolipid homeostasis process regulates_level_of some sphingolipid" xsd:string +domain: BFO:0000015 ! process +range: BFO:0000040 ! material entity +is_a: functionally_related_to ! functionally related to + +[Typedef] +id: RO:0002334 +name: regulated by +def: "inverse of regulates" [] +subset: RO:0002259 +domain: BFO:0000015 ! process +range: BFO:0000015 ! process +is_transitive: true +is_a: RO:0002427 ! causally downstream of or within + +[Typedef] +id: RO:0002335 +name: negatively regulated by +def: "inverse of negatively regulates" [] +subset: RO:0002259 +is_a: RO:0002334 ! regulated by + +[Typedef] +id: RO:0002336 +name: positively regulated by +def: "inverse of positively regulates" [] +subset: RO:0002259 +is_a: RO:0002334 ! regulated by + +[Typedef] +id: RO:0002337 +name: related via localization to +def: "A relationship that holds via some process of localization" [] +property_value: curator_notes "Do not use this relation directly. It is a grouping relation." xsd:string +domain: BFO:0000015 ! process +range: BFO:0000002 ! continuant + +[Typedef] +id: RO:0002338 +name: has target start location +def: "This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from some initial location l to some destination." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +is_a: RO:0002344 ! results in transport to from or in +transitive_over: part_of ! part of + +[Typedef] +id: RO:0002339 +name: has target end location +def: "This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from a an initial location to some destination l." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +is_a: RO:0002344 ! results in transport to from or in +transitive_over: part_of ! part of + +[Typedef] +id: RO:0002341 +name: results in transport along +def: "Holds between p and l when p is a transportation or localization process and the outcome of this process is to move c from one location to another, and the route taken by c follows a path that is aligned_with l " [] +is_a: RO:0002337 ! related via localization to + +[Typedef] +id: RO:0002342 +name: results in transport across +def: "Holds between p and m when p is a transportation or localization process and the outcome of this process is to move c from one location to another, and the route taken by c follows a path that crosses m." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +is_a: RO:0002021 ! occurs across +is_a: RO:0002344 ! results in transport to from or in + +[Typedef] +id: RO:0002343 +name: results in growth of +property_value: example_of_usage "'pollen tube growth' results_in growth_of some 'pollen tube'" xsd:string +is_a: RO:0002295 ! results in developmental progression of +is_a: RO:0040036 ! results in changes to anatomical or cellular structure + +[Typedef] +id: RO:0002344 +name: results in transport to from or in +property_value: example_of_usage "'mitochondrial transport' results_in_transport_to_from_or_in some mitochondrion (GO:0005739)" xsd:string +is_a: RO:0002337 ! related via localization to + +[Typedef] +id: RO:0002350 +name: member of +def: "is member of is a mereological relation between a item and a collection." [] +property_value: example_of_usage "An organism that is a member of a population of organisms" xsd:string +is_a: part_of ! part of +inverse_of: has_member ! has member + +[Typedef] +id: RO:0002354 +name: formed as result of +is_a: output_of ! output of + +[Typedef] +id: RO:0002375 +name: in branching relationship with +def: "A relationship that holds between two material entities in a system of connected structures, where the branching relationship holds based on properties of the connecting network." [] +property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving branching relationships" xsd:string +property_value: curator_notes "This relation can be used for geographic features (e.g. rivers) as well as anatomical structures (plant branches and roots, leaf veins, animal veins, arteries, nerves)" xsd:string +property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/branching_part_of.png +property_value: seeAlso "https://github.com/obophenotype/uberon/issues/170" xsd:anyURI +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity +is_a: RO:0002323 ! mereotopologically related to + +[Typedef] +id: RO:0002379 +name: spatially coextensive with +def: "x spatially_coextensive_with y if and inly if x and y have the same location" [] +property_value: curator_notes "This relation is added for formal completeness. It is unlikely to be used in many practical scenarios" xsd:string +property_value: example_of_usage "A lump of clay and a statue" xsd:string +is_a: overlaps ! overlaps + +[Typedef] +id: RO:0002384 +name: has developmental potential involving +def: "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction)." [] +domain: UBERON:0001062 ! anatomical entity +range: UBERON:0001062 ! anatomical entity +is_a: RO:0002324 ! developmentally related to + +[Typedef] +id: RO:0002386 +name: has potential to developmentally induce +def: "x has potential to developmentally induce y iff x developmentally induces y or x is capable of developmentally inducing y" [] +is_a: RO:0002384 ! has developmental potential involving + +[Typedef] +id: RO:0002388 +name: has potential to directly develop into +def: "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y" [] +is_a: has_potential_to_develop_into ! has potential to develop into + +[Typedef] +id: RO:0002404 +name: causally downstream of +def: "inverse of upstream of" [] +is_a: preceded_by ! preceded by +is_a: RO:0002427 ! causally downstream of or within +inverse_of: RO:0002411 ! causally upstream of + +[Typedef] +id: RO:0002410 +name: causally related to +def: "relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause." [https://en.wikipedia.org/wiki/Causality] +property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +property_value: editor_note "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative?\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." xsd:string + +[Typedef] +id: RO:0002411 +name: causally upstream of +def: "p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_gocam +is_transitive: true +is_a: precedes ! precedes +is_a: RO:0002418 ! causally upstream of or within + +[Typedef] +id: RO:0002418 +name: causally upstream of or within +def: "p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q." [] +synonym: "affects" RELATED [] +property_value: editor_note "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" xsd:string +is_transitive: true +is_a: RO:0002501 ! causal relation between processes +inverse_of: RO:0002427 ! causally downstream of or within + +[Typedef] +id: RO:0002427 +name: causally downstream of or within +def: "inverse of causally upstream of or within" [] +subset: RO:0002259 +is_transitive: true +is_a: RO:0002501 ! causal relation between processes + +[Typedef] +id: RO:0002428 +name: involved in regulation of +def: "c involved in regulation of p if c is involved in some p' and p' regulates some p" [] +is_a: RO:0002263 ! acts upstream of +is_a: RO:0002431 ! involved in or involved in regulation of + +[Typedef] +id: RO:0002431 +name: involved in or involved in regulation of +def: "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p" [] +property_value: editor_note "OWL does not allow defining object properties via a Union" xsd:string +is_a: functionally_related_to ! functionally related to +is_a: RO:0002264 ! acts upstream of or within +is_a: RO:0002500 ! causal agent in process + +[Typedef] +id: RO:0002476 +name: child nucleus of +def: "c is a child nucleus of d if and only if c and d are both nuclei and parts of cells c' and d', where c' is derived from d' by mitosis and the genetic material in c is a copy of the generic material in d" [] +property_value: curator_notes "This relation is primarily used in the worm anatomy ontology for representing lineage at the level of nuclei. However, it is applicable to any organismal cell lineage." xsd:string +property_value: example_of_usage "ABal nucleus child nucleus of ABa nucleus (in C elegans)" xsd:string +is_a: RO:0002258 ! developmentally preceded by + +[Typedef] +id: RO:0002477 +name: child nucleus of in hermaphrodite +def: "A child nucleus relationship in which the cells are part of a hermaphroditic organism" [] +is_a: RO:0002476 ! child nucleus of + +[Typedef] +id: RO:0002478 +name: child nucleus of in male +def: "A child nucleus relationship in which the cells are part of a male organism" [] +is_a: RO:0002476 ! child nucleus of + +[Typedef] +id: RO:0002479 +name: has part that occurs in +def: "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c." [] +subset: ro-eco +domain: BFO:0000003 ! occurrent +range: BFO:0000004 ! independent continuant + +[Typedef] +id: RO:0002485 +name: receives input from +property_value: editor_note "See notes for inverse relation" xsd:string +is_a: connected_to ! connected to +inverse_of: RO:0002486 ! sends output to + +[Typedef] +id: RO:0002486 +name: sends output to +property_value: editor_note "This is an exploratory relation. The label is taken from the FMA. It needs aligned with the neuron-specific relations such as has postsynaptic terminal in." xsd:string +is_a: connected_to ! connected to + +[Typedef] +id: RO:0002487 +name: relation between physical entity and a process or stage +property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, typically connecting an anatomical entity to a biological process or developmental stage." xsd:string +domain: BFO:0000004 ! independent continuant +range: BFO:0000003 ! occurrent + +[Typedef] +id: RO:0002490 +name: existence overlaps +def: "x existence overlaps y if and only if either (a) the start of x is part of y or (b) the end of x is part of y. Formally: x existence starts and ends during y iff (α(x) >= α(y) & α(x) <= ω(y)) OR (ω(x) <= ω(y) & ω(x) >= α(y))" [] +comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription. +is_a: RO:0002487 ! relation between physical entity and a process or stage + +[Typedef] +id: RO:0002500 +name: causal agent in process +def: "A relationship between a material entity and a process where the material entity has some causal role that influences the process" [] +is_a: RO:0002595 ! causal relation between material entity and a process +inverse_of: RO:0002608 ! process has causal agent + +[Typedef] +id: RO:0002501 +name: causal relation between processes +def: "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q." [] +property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0002502 +name: depends on +property_value: seeAlso BFO:0000169 + +[Typedef] +id: RO:0002505 +name: has intermediate +def: "p has intermediate c if and only if p has parts p1, p2 and p1 has output c, and p2 has input c" [] +subset: ro-eco +property_value: example_of_usage "'lysine biosynthetic process via diaminopimelate' SubClassOf has_intermediate some diaminopimelate" xsd:string +is_a: RO:0000057 ! has participant + +[Typedef] +id: RO:0002565 +name: results in movement of +def: "Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c" [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +property_value: curator_notes "" xsd:string +is_a: RO:0040036 ! results in changes to anatomical or cellular structure + +[Typedef] +id: RO:0002567 +name: biomechanically related to +def: "A relation that holds between elements of a musculoskeletal system or its analogs." [] +property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the biomechanical processes." xsd:string +domain: UBERON:0000061 ! anatomical structure +range: UBERON:0000061 ! anatomical structure +is_a: functionally_related_to ! functionally related to + +[Typedef] +id: RO:0002584 +name: has part structure that is capable of +def: "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p" [] +property_value: example_of_usage "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" xsd:string +holds_over_chain: has_part capable_of +is_a: functionally_related_to ! functionally related to +is_a: RO:0002595 ! causal relation between material entity and a process + +[Typedef] +id: RO:0002586 +name: results in breakdown of +def: "p results in breakdown of c if and only if the execution of p leads to c no longer being present at the end of p" [] +is_a: RO:0002233 ! has input + +[Typedef] +id: RO:0002588 +name: results in assembly of +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +is_a: RO:0002297 ! results in formation of anatomical entity +is_a: RO:0002592 ! results in organization of + +[Typedef] +id: RO:0002590 +name: results in disassembly of +is_a: RO:0002586 ! results in breakdown of +is_a: RO:0002592 ! results in organization of + +[Typedef] +id: RO:0002592 +name: results in organization of +def: "p results in organization of c iff p results in the assembly, arrangement of constituent parts, or disassembly of c" [] +is_a: RO:0040036 ! results in changes to anatomical or cellular structure + +[Typedef] +id: RO:0002595 +name: causal relation between material entity and a process +def: "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity." [] +property_value: editor_note "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +domain: BFO:0000040 ! material entity +range: BFO:0000015 ! process +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0002596 +name: capable of regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a regulates p." [] +property_value: example_of_usage "pyrethroid -> growth" xsd:string +holds_over_chain: capable_of RO:0002211 +is_a: RO:0002500 ! causal agent in process + +[Typedef] +id: RO:0002597 +name: capable of negatively regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p." [] +holds_over_chain: capable_of RO:0002212 +is_a: RO:0002596 ! capable of regulating + +[Typedef] +id: RO:0002598 +name: capable of positively regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p." [] +property_value: example_of_usage "renin -> arteriolar smooth muscle contraction" xsd:string +holds_over_chain: capable_of RO:0002213 +is_a: RO:0002596 ! capable of regulating + +[Typedef] +id: RO:0002608 +name: process has causal agent +def: "Inverse of 'causal agent in process'" [] +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0004007 +name: has primary input or output +def: "p 'has primary input ot output' c iff either (a) p 'has primary input' c or (b) p 'has primary output' c." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +is_a: RO:0000057 ! has participant +created_by: https://orcid.org/0000-0002-6601-2165 +creation_date: 2018-12-13T11:26:17Z + +[Typedef] +id: RO:0004008 +name: has primary output +def: "p has primary output c if (a) p has output c and (b) the goal of process is to modify, produce, or transform c." [GOC:dph, GOC:kva, GOC:pt, https://orcid.org/0000-0002-6601-2165] {comment="PMID:27812932"} +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +is_a: RO:0002234 ! has output +is_a: RO:0004007 ! has primary input or output +created_by: https://orcid.org/0000-0002-6601-2165 +creation_date: 2018-12-13T11:26:32Z + +[Typedef] +id: RO:0004009 +name: has primary input +def: "p has primary input c if (a) p has input c and (b) the goal of process is to modify, consume, or transform c." [GOC:dph, GOC:kva, GOC:pt, https://orcid.org/0000-0002-6601-2165] {comment="PMID:27812932"} +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +is_a: RO:0002233 ! has input +is_a: RO:0004007 ! has primary input or output +created_by: https://orcid.org/0000-0002-6601-2165 +creation_date: 2018-12-13T11:26:56Z + +[Typedef] +id: RO:0004046 +name: causally upstream of or within, negative effect property_value: seeAlso "https://wiki.geneontology.org/Causally_upstream_of_or_within,_negative_effect" xsd:anyURI -is_a: causally_upstream_of_or_within ! causally upstream of or within +is_a: RO:0002418 ! causally upstream of or within +created_by: https://orcid.org/0000-0002-6601-2165 +creation_date: 2018-03-13T23:55:05Z + +[Typedef] +id: RO:0004047 +name: causally upstream of or within, positive effect +property_value: seeAlso https://wiki.geneontology.org/Causally_upstream_of_or_within,_positive_effect +is_a: RO:0002418 ! causally upstream of or within +created_by: https://orcid.org/0000-0002-6601-2165 +creation_date: 2018-03-13T23:55:19Z + +[Typedef] +id: RO:0012003 +name: acts on population of +def: "p acts on population of c iff c' is a collection, has members of type c, and p has participant c" [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +is_a: RO:0000057 ! has participant +created_by: https://orcid.org/0000-0003-1813-6857 +creation_date: 2020-06-08T17:21:33Z + +[Typedef] +id: RO:0012008 +name: results in fusion of +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +is_a: RO:0002592 ! results in organization of +created_by: https://orcid.org/0000-0003-1813-6857 +creation_date: 2021-02-26T07:28:29Z + +[Typedef] +id: RO:0013001 +name: has synaptic IO in region +def: "A relationship between a neuron and a region, where the neuron has a functionally relevant number of input and/or output synapses in that region." [] +synonym: "has synaptic input or output in" EXACT [] +is_a: RO:0002130 ! has synaptic terminal in +transitive_over: part_of ! part of +created_by: https://orcid.org/0000-0002-1373-1705 +creation_date: 2020-07-17T09:26:52Z + +[Typedef] +id: RO:0015011 +name: has cross section +def: "s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2." [https://orcid.org/0000-0002-6601-2165] +comment: Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round. + +[Typedef] +id: RO:0015012 +name: reciprocal of +def: "q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e." [https://orcid.org/0000-0002-6601-2165] +comment: There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality. + +[Typedef] +id: RO:0015015 +name: has high plasma membrane amount +def: "A relation between a cell and molecule or complex such that every instance of the cell has a high number of instances of that molecule expressed on the cell surface." [PMID:19243617] +property_value: dc-contributor https://orcid.org/0000-0003-1617-8244 +property_value: dc-contributor https://orcid.org/0000-0003-1940-6740 +property_value: example_of_usage "'Ly-76 high positive erythrocyte' equivalent to 'enucleate erythrocyte' and (has_high_plasma_membrane_amount some 'lymphocyte antigen 76 (mouse)')" xsd:string +domain: CL:0000000 ! cell +is_a: RO:0002104 ! has plasma membrane part + +[Typedef] +id: RO:0015016 +name: has low plasma membrane amount +def: "A relation between a cell and molecule or complex such that every instance of the cell has a low number of instances of that molecule expressed on the cell surface." [PMID:19243617] +property_value: dc-contributor https://orcid.org/0000-0003-1617-8244 +property_value: dc-contributor https://orcid.org/0000-0003-1940-6740 +property_value: example_of_usage "'DN2b thymocyte' equivalent to 'DN2 thymocyte' and (has_low_plasma_membrane_amount some 'mast/stem cell growth factor receptor')" xsd:string +domain: CL:0000000 ! cell +is_a: RO:0002104 ! has plasma membrane part + +[Typedef] +id: RO:0017001 +name: device utilizes material +def: "X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y." [] +synonym: "utilizes" BROAD [] +property_value: curator_notes "A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input." xsd:string +property_value: curator_notes "See github ticket https://github.com/oborel/obo-relations/issues/497" xsd:string +property_value: dc-contributor https://orcid.org/0000-0001-9625-1899 +property_value: dc-contributor https://orcid.org/0000-0003-2620-0345 +property_value: example_of_usage "A diagnostic testing device utilizes a specimen." xsd:string +holds_over_chain: capable_of RO:0002233 +creation_date: 2021-11-08T12:00:00Z + +[Typedef] +id: RO:0019000 +name: regulates characteristic +def: "A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C." [] +property_value: dc-contributor https://orcid.org/0000-0002-8688-6599 +domain: BFO:0000015 ! process +range: PATO:0000001 ! quality +holds_over_chain: RO:0002211 RO:0019000 +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0020101 +name: vessel supplies blood to +def: "x vessel supplies blood to y if and only if x is a vessel that supplies blood directly or indirectly to an anatomical structure y." [] +property_value: dc-contributor https://orcid.org/0000-0001-6677-8489 +property_value: dcterms-date "2024-02-01T10:09:22Z" xsd:dateTime +property_value: example_of_usage "brachial artery vessel supplies blood to brachialis muscle" xsd:string +range: UBERON:0000061 ! anatomical structure +is_a: supplies ! supplies + +[Typedef] +id: RO:0020102 +name: vessel drains blood from +def: "x vessel drains blood from y if and only if x is a vessel that drains blood directly or indirectly from an anatomical structure y." [] +property_value: dc-contributor https://orcid.org/0000-0001-6677-8489 +property_value: dcterms-date "2024-02-01T10:09:41Z" xsd:dateTime +property_value: example_of_usage "cystic vein vessel drains blood from gallbladder" xsd:string +range: UBERON:0000061 ! anatomical structure +is_a: drains ! drains + +[Typedef] +id: RO:0020103 +name: directly supplies and drains +def: "x directly supplies and drains y if and only if x is a capillary, y is an anatomical entity, and x directly supplies and drains y." [] +property_value: dc-contributor https://orcid.org/0000-0001-6677-8489 +property_value: dcterms-date "2024-02-01T10:09:59Z" xsd:dateTime +property_value: example_of_usage "alveolar capillary directly supplies and drains some alveolus" xsd:string +range: UBERON:0000061 ! anatomical structure +is_a: drains ! drains +is_a: supplies ! supplies + +[Typedef] +id: RO:0040036 +name: results in changes to anatomical or cellular structure +def: "p has anatomical participant c iff p has participant c, and c is an anatomical entity" [] +is_a: RO:0000057 ! has participant created_by: https://orcid.org/0000-0002-6601-2165 -creation_date: 2018-03-13T23:55:05Z +creation_date: 2018-09-26T01:08:58Z + +[Typedef] +id: aboral_to +name: aboral to +namespace: spatial +namespace: uberon +def: "nearer to the aboral opening of the organism, on the oral-aboral axis." [BSPO:cjm] +xref: BSPO:0015202 +is_transitive: true + +[Typedef] +id: action_notes +name: actions_notes +namespace: uberon +def: "Notes on how instances of this class functon biomechanically." [https://orcid.org/0000-0002-6601-2165] +xref: UBPROP:0000014 +property_value: editor_note "This annotation property may be replaced with an annotation property from an external ontology such as IAO" xsd:string +is_metadata_tag: true + +[Typedef] +id: adjacent_to +name: adjacent to +namespace: spatial +namespace: uberon +def: "x adjacent to y if and only if x and y share a boundary." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +xref: RO:0002220 +property_value: editor_note "This relation acts as a join point with BSPO" xsd:string +property_value: example_of_usage "A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts." xsd:string {seeAlso="issuecomment-218584934"} +property_value: example_of_usage "The epidermis layer of a vertebrate is adjacent to the dermis." xsd:string +property_value: example_of_usage "The plasma membrane of a cell is adjacent to the cytoplasm, and also to the cell lumen which the cytoplasm occupies." xsd:string +property_value: example_of_usage "The skin of the forelimb is adjacent to the skin of the torso if these are considered anatomical subdivisions with a defined border. Otherwise a relation such as continuous_with would be used." xsd:string +domain: BFO:0000004 ! independent continuant +range: BFO:0000004 ! independent continuant +is_symmetric: true +is_a: RO:0002163 ! spatially disjoint from + +[Typedef] +id: ambiguous_for_taxon +name: ambiguous for taxon +namespace: uberon +def: "S ambiguous_for_taxon T if the class S does not have a clear referent in taxon T. An example would be the class 'manual digit 1', which encompasses a homology hypotheses that is accepted for some species (e.g. human and mouse), but does not have a clear referent in Aves - the referent is dependent on the hypothesis embraced, and also on the ontogenetic stage. [PHENOSCPAE:asilomar_mtg]" [] +xref: RO:0002173 +property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints +is_metadata_tag: true +is_class_level: true + +[Typedef] +id: anastomoses_with +name: anastomoses with +namespace: uberon + +[Typedef] +id: anterior_to +name: anterior to +namespace: spatial +namespace: uberon +def: "x anterior to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail." [BSPO:cjm] +synonym: "rostral_to" EXACT [] +xref: BSPO:0000096 +property_value: seeAlso FBcv:0000039 +property_value: seeAlso FBql:00005863 +is_transitive: true +inverse_of: posterior_to ! posterior to + +[Typedef] +id: anteriorly_connected_to +name: anteriorly connected to +namespace: uberon +def: "x anteriorly_connected_to y iff the anterior part of x is connected to y. i.e. x connected_to y and x posterior_to y." [http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern] +is_a: connected_to ! connected to +is_a: posterior_to ! posterior to +is_a: transitively_anteriorly_connected_to ! transitively anteriorly connected to + +[Typedef] +id: appendage_segment_number +name: appendage segment number +namespace: uberon +def: "x appendage_segment_number N if and only if (i) x is a appendage_segment, and (ii) x is appendage_segment number N in a series of appendage_segments repeated along an proximo-distal axis, with appendage_segment_number 1 being the proximalmost appendage_segment (in tetrapods this would be the stylopod, as we do not classify girdles as appendage segments)." [https://orcid.org/0000-0002-6601-2165] +comment: Examples: in dropsphila coxa=1, trochanter=2, femur=3, tibia=4, tarsal segments 1-5=5-9, pretarsus=10 +xref: UBPROP:0000110 +property_value: is_count_of UBERON:0010758 +property_value: preceding_element_is BSPO:0000100 +is_metadata_tag: true + +[Typedef] +id: approximately_perpendicular_to +name: approximately perpendicular to +namespace: spatial +def: "Crosses at an angle that is 90 degrees, or close to 90 degrees. In any non-linear organism, the main axes are rarely perpendicular when taken through the organism as a whole." [BSPO:cjm] +xref: BSPO:0000104 + +[Typedef] +id: attaches_to +name: attached to +namespace: uberon +def: "a is attached to b if and only if a and b are discrete objects or object parts, and there are physical connections between a and b such that a force pulling a will move b, or a force pulling b will move a" [] +subset: ro-eco +xref: RO:0002371 +is_symmetric: true +is_a: attaches_to_part_of ! attached to part of +is_a: connected_to ! connected to + +[Typedef] +id: attaches_to_part_of +name: attached to part of +namespace: uberon +def: "a is attached to part of b if a is attached to b, or a is attached to some p, where p is part of b." [] +xref: RO:0002177 +domain: UBERON:0000061 ! anatomical structure +range: UBERON:0000061 ! anatomical structure +is_a: RO:0002323 ! mereotopologically related to +is_a: RO:0002567 ! biomechanically related to + +[Typedef] +id: axiom_lost_from_external_ontology +name: axiom_lost_from_external_ontology +namespace: uberon +def: "A textual description of an axiom loss in this ontology compared to an external ontology." [https://orcid.org/0000-0002-6601-2165] +comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO +xref: UBPROP:0000002 +is_metadata_tag: true + +[Typedef] +id: bounding_layer_of +name: bounding layer of +namespace: uberon +def: "X outer_layer_of Y iff:\n. X :continuant that bearer_of some PATO:laminar\n. X part_of Y\n. exists Z :surface\n. X has_boundary Z\n. Z boundary_of Y\n\nhas_boundary: http://purl.obolibrary.org/obo/RO_0002002\nboundary_of: http://purl.obolibrary.org/obo/RO_0002000" [] +comment: A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane. +subset: ro-eco +xref: RO:0002007 +range: BFO:0000040 ! material entity +is_a: part_of ! part of + +[Typedef] +id: branching_part_of +name: branching part of +namespace: uberon +def: "x is a branching part of y if and only if x is part of y and x is connected directly or indirectly to the main stem of y" [] +subset: ro-eco +xref: RO:0002380 +property_value: example_of_usage "In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, B1 is a (direct) branching part of T. B1-1, B1-2, and B1-3 are also branching parts of T, but these are considered indirect branching parts as they do not directly connect to the main stem S" xsd:string +property_value: seeAlso "FMA:85994" xsd:string +property_value: seeAlso https://github.com/obophenotype/uberon/issues/2212 +is_a: part_of ! part of +is_a: RO:0002375 ! in branching relationship with +inverse_of: has_branching_part ! has branching part + +[Typedef] +id: by_means +name: by_means + +[Typedef] +id: capable_of +name: capable of +namespace: uberon +def: "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. " [] +subset: ro-eco +xref: RO:0002215 +property_value: curator_notes "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." xsd:string +property_value: example_of_usage "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" xsd:string +property_value: example_of_usage "osteoclast SubClassOf 'capable of' some 'bone resorption'" xsd:string +domain: BFO:0000004 ! independent continuant +range: BFO:0000015 ! process +is_a: capable_of_part_of ! capable of part of [Typedef] -id: causally_upstream_of_or_within,_positive_effect -name: causally upstream of or within, positive effect -xref: RO:0004047 -property_value: seeAlso https://wiki.geneontology.org/Causally_upstream_of_or_within,_positive_effect -is_a: causally_upstream_of_or_within ! causally upstream of or within -created_by: https://orcid.org/0000-0002-6601-2165 -creation_date: 2018-03-13T23:55:19Z +id: capable_of_part_of +name: capable of part of +namespace: uberon +def: "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p." [] +xref: RO:0002216 +property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/reflexivity/ +is_a: functionally_related_to ! functionally related to +is_a: RO:0002500 ! causal agent in process [Typedef] id: channel_for @@ -26709,51 +27558,6 @@ name: channels_into namespace: uberon is_transitive: true -[Typedef] -id: characteristic_of -name: characteristic of -def: "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence." [] -comment: Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing. -xref: RO:0000052 -property_value: example_of_usage "this fragility is a characteristic of this vase" xsd:string -property_value: example_of_usage "this red color is a characteristic of this apple" xsd:string -is_functional: true -is_a: characteristic_of_part_of ! characteristic of part of -inverse_of: has_characteristic ! has characteristic - -[Typedef] -id: characteristic_of_part_of -name: characteristic of part of -def: "q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w." [] -xref: RO:0002314 -property_value: editor_note "Because part_of is transitive, inheres in is a sub-relation of characteristic of part of" xsd:string -property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/reflexivity/ -is_a: depends_on ! depends on -transitive_over: part_of ! part of - -[Typedef] -id: child_nucleus_of -name: child nucleus of -def: "c is a child nucleus of d if and only if c and d are both nuclei and parts of cells c' and d', where c' is derived from d' by mitosis and the genetic material in c is a copy of the generic material in d" [] -xref: RO:0002476 -property_value: curator_notes "This relation is primarily used in the worm anatomy ontology for representing lineage at the level of nuclei. However, it is applicable to any organismal cell lineage." xsd:string -property_value: example_of_usage "ABal nucleus child nucleus of ABa nucleus (in C elegans)" xsd:string -is_a: developmentally_preceded_by ! developmentally preceded by - -[Typedef] -id: child_nucleus_of_in_hermaphrodite -name: child nucleus of in hermaphrodite -def: "A child nucleus relationship in which the cells are part of a hermaphroditic organism" [] -xref: RO:0002477 -is_a: child_nucleus_of ! child nucleus of - -[Typedef] -id: child_nucleus_of_in_male -name: child nucleus of in male -def: "A child nucleus relationship in which the cells are part of a male organism" [] -xref: RO:0002478 -is_a: child_nucleus_of ! child nucleus of - [Typedef] id: composed_primarily_of name: composed primarily of @@ -26785,7 +27589,7 @@ namespace: uberon subset: ro-eco xref: RO:0002322 property_value: editor_note "An experimental relation currently used to connect a feature possessed by an organism (e.g. anatomical structure, biological process, phenotype or quality) to a habitat or environment in which that feature is well suited, adapted or provides a reproductive advantage for the organism. For example, fins to an aquatic environment. Usually this will mean that the structure is adapted for this environment, but we avoid saying this directly - primitive forms of the structure may not have evolved specifically for that environment (for example, early wings were not necessarily adapted for an aerial environment). Note also that this is a statement about the general class of structures - not every instance of a limb need confer an advantage for a terrestrial environment, e.g. if the limb is vestigial." xsd:string -is_a: ecologically_related_to ! ecologically related to +is_a: RO:0002321 ! ecologically related to [Typedef] id: connected_to @@ -26796,7 +27600,7 @@ xref: RO:0002170 property_value: example_of_usage "a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones)." xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Connectivity-Design-Pattern" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-articulations-Design-Pattern" xsd:anyURI -is_a: mereotopologically_related_to ! mereotopologically related to +is_a: RO:0002323 ! mereotopologically related to [Typedef] id: connecting_branch_of @@ -26807,8 +27611,8 @@ xref: RO:0002252 property_value: example_of_usage "In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, B1 is connecting branch of S, and B1-1 as a connecting branch of B1." xsd:string property_value: seeAlso https://github.com/obophenotype/uberon/issues/2212 is_a: connected_to ! connected to -is_a: in_branching_relationship_with ! in branching relationship with -inverse_of: has_connecting_branch ! has connecting branch +is_a: RO:0002375 ! in branching relationship with +inverse_of: RO:0002253 ! has connecting branch [Typedef] id: connects @@ -26821,7 +27625,16 @@ property_value: example_of_usage "The M8 connects Glasgow and Edinburgh" xsd:str property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Connectivity-Design-Pattern" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-articulations-Design-Pattern" xsd:anyURI domain: BFO:0000004 ! independent continuant -is_a: mereotopologically_related_to ! mereotopologically related to +is_a: RO:0002323 ! mereotopologically related to + +[Typedef] +id: contains +name: contains +name: obsolete contains +namespace: uberon +xref: RO:0001019 +property_value: seeAlso https://github.com/oborel/obo-relations/issues/693 +is_obsolete: true [Typedef] id: contains_process @@ -26842,7 +27655,7 @@ property_value: seeAlso "FMA:85972" xsd:string domain: BFO:0000004 ! independent continuant range: BFO:0000004 ! independent continuant is_symmetric: true -is_a: mereotopologically_related_to ! mereotopologically related to +is_a: RO:0002323 ! mereotopologically related to [Typedef] id: contributes_to_morphology_of @@ -26942,12 +27755,6 @@ def: "Syntax: upper/lower = I.C.P.M / I.C.P.M. When used with generic tooth clas xref: UBPROP:0000113 is_metadata_tag: true -[Typedef] -id: depends_on -name: depends on -xref: RO:0002502 -property_value: seeAlso BFO:0000169 - [Typedef] id: depiction name: depiction @@ -26955,26 +27762,6 @@ namespace: uberon xref: http://xmlns.com/foaf/0.1/depiction is_metadata_tag: true -[Typedef] -id: derived_by_descent_from -name: derived by descent from -def: "d derived_by_descent_from a if d is specified by some genetic program that is sequence-inherited-from a genetic program that specifies a." [] -xref: RO:0002156 -is_transitive: true -is_a: evolutionarily_related_to ! evolutionarily related to -inverse_of: has_derived_by_descendant ! has derived by descendant - -[Typedef] -id: derived_from_ancestral_fusion_of -name: derived from ancestral fusion of -namespace: uberon -def: "x has_fused_element y iff: there exists some z : x has_part z, z homologous_to y, and y is a distinct element, the boundary between x and z is largely fiat" [] -comment: A has_fused_element B does not imply that A has_part some B: rather than A has_part some B', where B' that has some evolutionary relationship to B. -synonym: "has fused element" BROAD [] -xref: RO:0002374 -property_value: example_of_usage "false" xsd:boolean -is_a: derived_by_descent_from ! derived by descent from - [Typedef] id: development_notes name: development_notes @@ -26984,16 +27771,6 @@ xref: UBPROP:0000011 property_value: editor_note "This annotation property may be replaced with an annotation property from an external ontology such as IAO" xsd:string is_metadata_tag: true -[Typedef] -id: developmentally_contributes_to -name: developmentally contributes to -def: "inverse of has developmental contribution from" [] -subset: RO:0002259 -xref: RO:0002255 -holds_over_chain: develops_into part_of -is_a: developmentally_succeeded_by ! developmentally succeeded by -is_a: has_potential_to_developmentally_contribute_to ! has potential to developmentally contribute to - [Typedef] id: developmentally_induced_by name: developmentally induced by @@ -27003,36 +27780,8 @@ xref: RO:0002256 property_value: curator_notes "We place this under 'developmentally preceded by'. This placement should be examined in the context of reciprocal inductions[cjm]" xsd:string domain: UBERON:0000465 ! material anatomical entity range: UBERON:0000465 ! material anatomical entity -is_a: developmentally_preceded_by ! developmentally preceded by -inverse_of: developmentally_induces ! developmentally induces - -[Typedef] -id: developmentally_induces -name: developmentally induces -def: "Inverse of developmentally induced by" [] -xref: RO:0002257 -is_a: developmentally_succeeded_by ! developmentally succeeded by -is_a: has_potential_to_developmentally_induce ! has potential to developmentally induce - -[Typedef] -id: developmentally_preceded_by -name: developmentally preceded by -def: "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p" [] -comment: This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from -xref: RO:0002258 -property_value: curator_notes "In general you should not use this relation to make assertions - use one of the more specific relations below this one" xsd:string -property_value: editor_note "false" xsd:boolean -domain: BFO:0000002 ! continuant -range: BFO:0000002 ! continuant -is_a: developmentally_related_to ! developmentally related to -inverse_of: developmentally_succeeded_by ! developmentally succeeded by - -[Typedef] -id: developmentally_related_to -name: developmentally related to -def: "A relationship that holds between entities participating in some developmental process (GO:0032502)" [] -xref: RO:0002324 -property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" xsd:string +is_a: RO:0002258 ! developmentally preceded by +inverse_of: RO:0002257 ! developmentally induces [Typedef] id: developmentally_replaces @@ -27041,14 +27790,7 @@ namespace: uberon def: "x developmentally replaces y if and only if there is some developmental process that causes x to move or to cease to exist, and for the site that was occupied by x to become occupied by y, where y either comes into existence in this site or moves to this site from somewhere else" [] xref: RO:0002285 property_value: editor_note "This relation is intended for cases such as when we have a bone element replacing its cartilage element precursor. Currently most AOs represent this using 'develops from'. We need to decide whether 'develops from' will be generic and encompass replacement, or whether we need a new name for a generic relation that encompasses replacement and development-via-cell-lineage" xsd:string -is_a: developmentally_preceded_by ! developmentally preceded by - -[Typedef] -id: developmentally_succeeded_by -name: developmentally succeeded by -def: "Inverse of developmentally preceded by" [] -xref: RO:0002286 -is_a: has_developmental_potential_involving ! has developmental potential involving +is_a: RO:0002258 ! developmentally preceded by [Typedef] id: develops_from @@ -27060,8 +27802,8 @@ xref: RO:0002202 domain: BFO:0000004 ! independent continuant range: BFO:0000004 ! independent continuant is_transitive: true -is_a: developmentally_preceded_by ! developmentally preceded by is_a: has_developmental_contribution_from ! has developmental contribution from +is_a: RO:0002258 ! developmentally preceded by inverse_of: develops_into ! develops into [Typedef] @@ -27081,7 +27823,7 @@ def: "x develops_in y if x is located in y whilst x is developing" [] xref: RO:0002226 domain: UBERON:0001062 ! anatomical entity holds_over_chain: directly_develops_from located_in -is_a: developmentally_preceded_by ! developmentally preceded by +is_a: RO:0002258 ! developmentally preceded by [Typedef] id: develops_into @@ -27091,23 +27833,9 @@ def: "inverse of develops from" [] subset: RO:0002259 xref: RO:0002203 is_transitive: true -is_a: developmentally_succeeded_by ! developmentally succeeded by is_a: has_potential_to_develop_into ! has potential to develop into -is_a: has_potential_to_directly_develop_into ! has potential to directly develop into - -[Typedef] -id: device_utilizes_material -name: device utilizes material -def: "X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y." [] -synonym: "utilizes" BROAD [] -xref: RO:0017001 -property_value: curator_notes "A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input." xsd:string -property_value: curator_notes "See github ticket https://github.com/oborel/obo-relations/issues/497" xsd:string -property_value: dc-contributor https://orcid.org/0000-0001-9625-1899 -property_value: dc-contributor https://orcid.org/0000-0003-2620-0345 -property_value: example_of_usage "A diagnostic testing device utilizes a specimen." xsd:string -holds_over_chain: capable_of has_input -creation_date: 2021-11-08T12:00:00Z +is_a: RO:0002286 ! developmentally succeeded by +is_a: RO:0002388 ! has potential to directly develop into [Typedef] id: directly_develops_from @@ -27118,27 +27846,7 @@ comment: TODO - add child relations from DOS synonym: "has developmental precursor" EXACT [] xref: RO:0002207 is_a: develops_from ! develops from -inverse_of: directly_develops_into ! directly develops into - -[Typedef] -id: directly_develops_into -name: directly develops into -def: "inverse of directly develops from" [] -subset: RO:0002259 -xref: RO:0002210 -is_a: develops_into ! develops into - -[Typedef] -id: directly_supplies_and_drains -name: directly supplies and drains -def: "x directly supplies and drains y if and only if x is a capillary, y is an anatomical entity, and x directly supplies and drains y." [] -xref: RO:0020103 -property_value: dc-contributor https://orcid.org/0000-0001-6677-8489 -property_value: dcterms-date "2024-02-01T10:09:59Z" xsd:dateTime -property_value: example_of_usage "alveolar capillary directly supplies and drains some alveolus" xsd:string -range: UBERON:0000061 ! anatomical structure -is_a: drains ! drains -is_a: supplies ! supplies +inverse_of: RO:0002210 ! directly develops into [Typedef] id: distal_to @@ -27230,25 +27938,14 @@ is_a: connected_to ! connected to [Typedef] id: dubious_for_taxon name: dubious for taxon -name: dubious_for_taxon namespace: uberon -def: "S dubious_for_taxon T if it is probably the case that no instances of S can be found in any instance of T." [https://orcid.org/0000-0002-6601-2165] +def: "S dubious_for_taxon T if it is probably the case that no instances of S can be found in any instance of T." [] comment: This relation lacks a strong logical interpretation, but can be used in place of never_in_taxon where it is desirable to state that the definition of the class is too strict for the taxon under consideration, but placing a never_in_taxon link would result in a chain of inconsistencies that will take ongoing coordinated effort to resolve. Example: metencephalon in teleost -comment: this relation lacks a strong logical interpretation, but can be used in place of never_in_taxon where it is desirable to state that the definition of the class is too strict for the taxon under consideration, but placing a never_in_taxon link would result in a chain of inconsistencies that will take time to resolve. Example: metencephalon in teleost xref: RO:0002174 property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints is_metadata_tag: true is_class_level: true -[Typedef] -id: ecologically_related_to -name: ecologically related to -def: "A relationship that is mediated in some way by the environment or environmental feature (ENVO:00002297)" [] -subset: ro-eco -xref: RO:0002321 -property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving ecological interactions" xsd:string -property_value: editor_note "Awaiting class for domain/range constraint, see: https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6" xsd:string - [Typedef] id: editor_note name: editor note @@ -27265,18 +27962,9 @@ def: "inverse of ends with" [] subset: ro-eco xref: RO:0002229 is_a: part_of ! part of -is_a: temporally_related_to ! temporally related to +is_a: RO:0002222 ! temporally related to inverse_of: ends_with ! ends with -[Typedef] -id: ends_after -name: ends after -comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X) -subset: ro-eco -xref: RO:0002086 -is_transitive: true -is_a: temporally_related_to ! temporally related to - [Typedef] id: ends_with name: ends with @@ -27286,14 +27974,7 @@ subset: ro-eco xref: RO:0002230 is_transitive: true is_a: has_part ! has part -is_a: temporally_related_to ! temporally related to - -[Typedef] -id: evolutionarily_related_to -name: evolutionarily related to -def: "A relationship that holds via some environmental process" [] -xref: RO:0002320 -property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the process of evolution." xsd:string +is_a: RO:0002222 ! temporally related to [Typedef] id: example_of_usage @@ -27307,13 +27988,11 @@ is_metadata_tag: true id: existence_ends_during name: existence ends during namespace: uberon -def: "Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely." [https://orcid.org/0000-0002-6601-2165] def: "x existence ends during y if and only if the time point at which x ends is before or equivalent to the time point at which y ends and after or equivalent to the point at which y starts. Formally: x existence ends during y iff ω(x) <= ω(y) and ω(x) >= α(y)." [] comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription. -synonym: "ceases_to_exist_during" EXACT [] xref: RO:0002492 is_a: existence_ends_during_or_before ! existence ends during or before -is_a: existence_overlaps ! existence overlaps +is_a: RO:0002490 ! existence overlaps transitive_over: part_of ! part of [Typedef] @@ -27323,9 +28002,9 @@ namespace: uberon def: "x existence ends during or before y if and only if the time point at which x ends is before or equivalent to the time point at which y ends." [] comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription. xref: RO:0002497 -holds_over_chain: developmentally_succeeded_by existence_ends_during_or_before holds_over_chain: part_of existence_ends_during_or_before -is_a: relation_between_physical_entity_and_a_process_or_stage ! relation between physical entity and a process or stage +holds_over_chain: RO:0002286 existence_ends_during_or_before +is_a: RO:0002487 ! relation between physical entity and a process or stage transitive_over: part_of ! part of transitive_over: precedes ! precedes transitive_over: simultaneous_with ! simultaneous with @@ -27339,14 +28018,6 @@ comment: The relations here were created based on work originally by Fabian Neuh xref: RO:0002493 is_a: existence_ends_during ! existence ends during -[Typedef] -id: existence_overlaps -name: existence overlaps -def: "x existence overlaps y if and only if either (a) the start of x is part of y or (b) the end of x is part of y. Formally: x existence starts and ends during y iff (α(x) >= α(y) & α(x) <= ω(y)) OR (ω(x) <= ω(y) & ω(x) >= α(y))" [] -comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription. -xref: RO:0002490 -is_a: relation_between_physical_entity_and_a_process_or_stage ! relation between physical entity and a process or stage - [Typedef] id: existence_starts_and_ends_during name: existence starts and ends during @@ -27364,8 +28035,8 @@ name: existence starts during namespace: uberon def: "x existence starts during y if and only if the time point at which x starts is after or equivalent to the time point at which y starts and before or equivalent to the time point at which y ends. Formally: x existence starts during y iff α(x) >= α(y) & α(x) <= ω(y)." [] xref: RO:0002488 -is_a: existence_overlaps ! existence overlaps is_a: existence_starts_during_or_after ! existence starts during or after +is_a: RO:0002490 ! existence overlaps transitive_over: part_of ! part of [Typedef] @@ -27375,9 +28046,9 @@ namespace: uberon def: "x existence starts during or after y if and only if the time point at which x starts is after or equivalent to the time point at which y starts. Formally: x existence starts during or after y iff α (x) >= α (y)." [] comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription. xref: RO:0002496 -holds_over_chain: developmentally_preceded_by existence_starts_during_or_after holds_over_chain: part_of existence_starts_during_or_after -is_a: relation_between_physical_entity_and_a_process_or_stage ! relation between physical entity and a process or stage +holds_over_chain: RO:0002258 existence_starts_during_or_after +is_a: RO:0002487 ! relation between physical entity and a process or stage transitive_over: part_of ! part of transitive_over: preceded_by ! preceded by transitive_over: simultaneous_with ! simultaneous with @@ -27390,31 +28061,12 @@ def: "x starts ends with y if and only if the time point at which x starts is eq xref: RO:0002489 is_a: existence_starts_during ! existence starts during -[Typedef] -id: expressed_in -name: expressed in -def: "x expressed in y if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and the transcription of x is part of the gene expression process (iii) x is a mature gene product such as a protein, and x was translated or otherwise processes from a transcript that was transcribed as part of this gene expression process" [] -xref: RO:0002206 -property_value: example_of_usage "'neural crest cell' SubClassOf expresses some 'Wnt1 gene'" xsd:string -domain: BFO:0000002 ! continuant -range: UBERON:0000465 ! material anatomical entity -is_a: genomically_related_to ! genomically related to -inverse_of: expresses ! expresses -transitive_over: part_of ! part of - -[Typedef] -id: expresses -name: expresses -def: "y expresses x if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and x was transcribed from a gene as part of the gene expression process (iii) x is a mature gene product (protein or RNA), and x was translated or otherwise processed from a transcript that was transcribed as part of the gene expression process." [] -xref: RO:0002292 -is_a: genomically_related_to ! genomically related to - [Typedef] id: extends_fibers_into name: extends_fibers_into namespace: uberon def: "X extends_fibers into Y iff there exists some neuron (N) and N has_soma_location X and N 'has synaptic IO in region' some Y" [https://orcid.org/0000-0002-7073-9172] -holds_over_chain: has_soma_location has_synaptic_IO_in_region +holds_over_chain: RO:0002100 RO:0013001 is_symmetric: true is_a: connected_to ! connected to @@ -27481,12 +28133,6 @@ namespace: uberon xref: http://xmlns.com/foaf/0.1/page is_metadata_tag: true -[Typedef] -id: formed_as_result_of -name: formed as result of -xref: RO:0002354 -is_a: output_of ! output of - [Typedef] id: function_notes name: function_notes @@ -27505,16 +28151,7 @@ xref: RO:0002328 property_value: curator_notes "This is a grouping relation that collects relations used for the purpose of connecting structure and function" xsd:string [Typedef] -id: genomically_related_to -name: genomically related to -def: "holds between two entities when some genome-level process such as gene expression is involved. This includes transcriptional, spliceosomal events. These relations can be used between either macromolecule entities (such as regions of nucleic acid) or between their abstract informational counterparts." [] -xref: RO:0002330 -property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving the genome of an organism" xsd:string -domain: BFO:0000002 ! continuant -range: BFO:0000002 ! continuant - -[Typedef] -id: has_2D_boundary +id: has_boundary name: has 2D boundary namespace: uberon def: "a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity" [] @@ -27524,144 +28161,55 @@ property_value: editor_note "Although the boundary is two-dimensional, it exists property_value: example_of_usage "my body has 2D boundary the surface of my skin" xsd:string domain: BFO:0000040 ! material entity range: BFO:0000141 ! immaterial entity -is_a: mereotopologically_related_to ! mereotopologically related to +is_a: RO:0002323 ! mereotopologically related to [Typedef] id: has_branching_part name: has branching part namespace: uberon def: "inverse of branching part of" [] -subset: ro-eco -subset: RO:0002259 -xref: RO:0002569 -is_transitive: true -is_a: has_part ! has part -is_a: in_branching_relationship_with ! in branching relationship with - -[Typedef] -id: has_characteristic -name: has characteristic -def: "Inverse of characteristic_of" [] -xref: RO:0000053 -property_value: editor_note "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." xsd:string -property_value: example_of_usage "this apple is bearer of this red color" xsd:string -property_value: example_of_usage "this vase is bearer of this fragility" xsd:string -is_inverse_functional: true - -[Typedef] -id: has_component -name: has component -namespace: uberon -def: "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] -subset: ro-eco -xref: RO:0002180 -property_value: curator_notes "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." xsd:string -property_value: editor_note "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." xsd:string -property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:Componency -is_a: has_part ! has part - -[Typedef] -id: has_connecting_branch -name: has connecting branch -def: "inverse of connecting branch of" [] -subset: RO:0002259 -xref: RO:0002253 -is_a: in_branching_relationship_with ! in branching relationship with - -[Typedef] -id: has_cross_section -name: has cross section -def: "s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2." [https://orcid.org/0000-0002-6601-2165] -comment: Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round. -xref: RO:0015011 - -[Typedef] -id: has_derived_by_descendant -name: has derived by descendant -def: "inverse of derived by descent from" [] -subset: RO:0002259 -xref: RO:0002157 -is_transitive: true -is_a: evolutionarily_related_to ! evolutionarily related to - -[Typedef] -id: has_developmental_contribution_from -name: has developmental contribution from -namespace: uberon -def: "x has developmental contribution from y iff x has some part z such that z develops from y" [] -xref: RO:0002254 -property_value: example_of_usage "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" xsd:string -domain: UBERON:0001062 ! anatomical entity -range: UBERON:0001062 ! anatomical entity -holds_over_chain: has_part develops_from -is_a: developmentally_preceded_by ! developmentally preceded by -inverse_of: developmentally_contributes_to ! developmentally contributes to - -[Typedef] -id: has_developmental_potential_involving -name: has developmental potential involving -def: "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction)." [] -xref: RO:0002384 -domain: UBERON:0001062 ! anatomical entity -range: UBERON:0001062 ! anatomical entity -is_a: developmentally_related_to ! developmentally related to - -[Typedef] -id: has_end_location -name: has end location -def: "x 'has end location' y if and only if there exists some process z such that x 'ends with' z and z 'occurs in' y" [] -subset: ro-eco -xref: RO:0002232 -domain: BFO:0000015 ! process -range: BFO:0000004 ! independent continuant -holds_over_chain: ends_with occurs_in -is_a: has_part_that_occurs_in ! has part that occurs in - -[Typedef] -id: has_high_plasma_membrane_amount -name: has high plasma membrane amount -def: "A relation between a cell and molecule or complex such that every instance of the cell has a high number of instances of that molecule expressed on the cell surface." [PMID:19243617] -xref: RO:0015015 -property_value: dc-contributor https://orcid.org/0000-0003-1617-8244 -property_value: dc-contributor https://orcid.org/0000-0003-1940-6740 -property_value: example_of_usage "'Ly-76 high positive erythrocyte' equivalent to 'enucleate erythrocyte' and (has_high_plasma_membrane_amount some 'lymphocyte antigen 76 (mouse)')" xsd:string -domain: CL:0000000 ! cell -is_a: has_plasma_membrane_part ! has plasma membrane part - -[Typedef] -id: has_input -name: has input -def: "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -subset: ro-eco -xref: RO:0002233 -property_value: seeAlso "https://wiki.geneontology.org/Has_input" xsd:anyURI -domain: BFO:0000015 ! process -holds_over_chain: starts_with has_input -is_a: has_participant ! has participant -inverse_of: input_of ! input of +subset: ro-eco +subset: RO:0002259 +xref: RO:0002569 +is_transitive: true +is_a: has_part ! has part +is_a: RO:0002375 ! in branching relationship with [Typedef] -id: has_intermediate -name: has intermediate -def: "p has intermediate c if and only if p has parts p1, p2 and p1 has output c, and p2 has input c" [] +id: has_component +name: has component +namespace: uberon +def: "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] subset: ro-eco -xref: RO:0002505 -property_value: example_of_usage "'lysine biosynthetic process via diaminopimelate' SubClassOf has_intermediate some diaminopimelate" xsd:string -is_a: has_participant ! has participant +xref: RO:0002180 +property_value: curator_notes "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." xsd:string +property_value: editor_note "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." xsd:string +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:Componency +is_a: has_part ! has part [Typedef] -id: has_low_plasma_membrane_amount -name: has low plasma membrane amount -def: "A relation between a cell and molecule or complex such that every instance of the cell has a low number of instances of that molecule expressed on the cell surface." [PMID:19243617] -xref: RO:0015016 -property_value: dc-contributor https://orcid.org/0000-0003-1617-8244 -property_value: dc-contributor https://orcid.org/0000-0003-1940-6740 -property_value: example_of_usage "'DN2b thymocyte' equivalent to 'DN2 thymocyte' and (has_low_plasma_membrane_amount some 'mast/stem cell growth factor receptor')" xsd:string -domain: CL:0000000 ! cell -is_a: has_plasma_membrane_part ! has plasma membrane part +id: has_developmental_contribution_from +name: has developmental contribution from +namespace: uberon +def: "x has developmental contribution from y iff x has some part z such that z develops from y" [] +xref: RO:0002254 +property_value: example_of_usage "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" xsd:string +domain: UBERON:0001062 ! anatomical entity +range: UBERON:0001062 ! anatomical entity +holds_over_chain: has_part develops_from +is_a: RO:0002258 ! developmentally preceded by +inverse_of: RO:0002255 ! developmentally contributes to + +[Typedef] +id: has_fused_element +name: derived from ancestral fusion of +namespace: uberon +def: "x has_fused_element y iff: there exists some z : x has_part z, z homologous_to y, and y is a distinct element, the boundary between x and z is largely fiat" [] +comment: A has_fused_element B does not imply that A has_part some B: rather than A has_part some B', where B' that has some evolutionary relationship to B. +synonym: "has fused element" BROAD [] +xref: RO:0002374 +property_value: example_of_usage "false" xsd:boolean +is_a: RO:0002156 ! derived by descent from [Typedef] id: has_member @@ -27677,7 +28225,7 @@ name: has muscle antagonist namespace: uberon def: "m1 has_muscle_antagonist m2 iff m1 has_muscle_insertion s, m2 has_muscle_insection s, m1 acts in opposition to m2, and m2 is responsible for returning the structure to its initial position." [] xref: RO:0002568 -is_a: biomechanically_related_to ! biomechanically related to +is_a: RO:0002567 ! biomechanically related to [Typedef] id: has_muscle_insertion @@ -27688,7 +28236,7 @@ xref: RO:0002373 property_value: seeAlso http://dbpedia.org/property/insertion domain: UBERON:0000061 {IAO:0000116="We need to import uberon muscle into RO to use as a stricter domain constraint"} ! anatomical structure is_a: attaches_to ! attached to -is_a: biomechanically_related_to ! biomechanically related to +is_a: RO:0002567 ! biomechanically related to [Typedef] id: has_muscle_origin @@ -27699,17 +28247,15 @@ xref: RO:0002372 property_value: seeAlso http://dbpedia.org/property/origin domain: UBERON:0000061 {comment="We need to import uberon muscle to create a stricter domain constraint"} ! anatomical structure is_a: attaches_to ! attached to -is_a: biomechanically_related_to ! biomechanically related to +is_a: RO:0002567 ! biomechanically related to [Typedef] id: has_no_connections_with name: has no connections with -name: has_no_connections_with namespace: uberon -def: "A is has_no_connections_with B if there are no parts of A or B that have a connection with the other." [https://orcid.org/0000-0002-6601-2165] +def: "A is has_no_connections_with B if there are no parts of A or B that have a connection with the other." [] xref: RO:0002475 property_value: example_of_usage "'pectoral appendage skeleton' has no connections with 'pelvic appendage skeleton'" xsd:string -expand_assertion_to: "Class: EquivalentTo: (BFO_0000050 some ?X) and (RO_0002170 some (BFO_0000050 some ?Y))" [] is_metadata_tag: true is_class_level: true @@ -27721,25 +28267,9 @@ def: "Ontology annotation property. Relates an ontology to a term that is a desi xref: IAO:0000700 is_metadata_tag: true -[Typedef] -id: has_output -name: has output -def: "p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -subset: ro-eco -xref: RO:0002234 -property_value: seeAlso "https://wiki.geneontology.org/Has_output" xsd:anyURI -holds_over_chain: ends_with has_output -is_a: has_participant ! has participant -inverse_of: output_of ! output of - [Typedef] id: has_part name: has part -name: has_part -namespace: quality namespace: spatial namespace: uberon def: "a core relation that holds between a whole and its part" [] @@ -27756,48 +28286,9 @@ property_value: example_of_usage "this year has part this day (occurrent parthoo is_transitive: true is_a: overlaps ! overlaps -[Typedef] -id: has_part_structure_that_is_capable_of -name: has part structure that is capable of -def: "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p" [] -xref: RO:0002584 -property_value: example_of_usage "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" xsd:string -holds_over_chain: has_part capable_of -is_a: causal_relation_between_material_entity_and_a_process ! causal relation between material entity and a process -is_a: functionally_related_to ! functionally related to - -[Typedef] -id: has_part_that_occurs_in -name: has part that occurs in -def: "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c." [] -subset: ro-eco -xref: RO:0002479 -domain: BFO:0000003 ! occurrent -range: BFO:0000004 ! independent continuant - [Typedef] id: has_participant -name: has participant name: has_participant -def: "a relation between a process and a continuant, in which the continuant is somehow involved in the process" [] -xref: RO:0000057 -property_value: editor_note "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." xsd:string -property_value: example_of_usage "this blood coagulation has participant this blood clot" xsd:string -property_value: example_of_usage "this investigation has participant this investigator" xsd:string -property_value: example_of_usage "this process has participant this input material (or this output material)" xsd:string -domain: BFO:0000003 ! occurrent -range: BFO:0000002 ! continuant -holds_over_chain: has_part has_participant - -[Typedef] -id: has_plasma_membrane_part -name: has plasma membrane part -def: "Holds between a cell c and a protein complex or protein p if and only if that cell has as part a plasma_membrane[GO:0005886], and that plasma membrane has p as part." [] -xref: RO:0002104 -property_value: example_of_usage "Every B cell[CL_0000236] has plasma membrane part some immunoglobulin complex[GO_0019814]" xsd:string -domain: UBERON:0000465 ! material anatomical entity -range: UBERON:0000465 ! material anatomical entity -is_a: has_part ! has part [Typedef] id: has_potential_to_develop_into @@ -27805,7 +28296,7 @@ name: has potential to develop into namespace: uberon def: "x has the potential to develop into y iff x develops into y or if x is capable of developing into y" [] xref: RO:0002387 -is_a: has_developmental_potential_involving ! has developmental potential involving +is_a: RO:0002384 ! has developmental potential involving [Typedef] id: has_potential_to_developmentally_contribute_to @@ -27813,53 +28304,7 @@ name: has potential to developmentally contribute to namespace: uberon def: "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y" [] xref: RO:0002385 -is_a: has_developmental_potential_involving ! has developmental potential involving - -[Typedef] -id: has_potential_to_developmentally_induce -name: has potential to developmentally induce -def: "x has potential to developmentally induce y iff x developmentally induces y or x is capable of developmentally inducing y" [] -xref: RO:0002386 -is_a: has_developmental_potential_involving ! has developmental potential involving - -[Typedef] -id: has_potential_to_directly_develop_into -name: has potential to directly develop into -def: "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y" [] -xref: RO:0002388 -is_a: has_potential_to_develop_into ! has potential to develop into - -[Typedef] -id: has_primary_input -name: has primary input -def: "p has primary input c if (a) p has input c and (b) the goal of process is to modify, consume, or transform c." [GOC:dph, GOC:kva, GOC:pt, https://orcid.org/0000-0002-6601-2165] {comment="PMID:27812932"} -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -xref: RO:0004009 -is_a: has_input ! has input -is_a: has_primary_input_or_output ! has primary input or output -created_by: https://orcid.org/0000-0002-6601-2165 -creation_date: 2018-12-13T11:26:56Z - -[Typedef] -id: has_primary_input_or_output -name: has primary input or output -def: "p 'has primary input ot output' c iff either (a) p 'has primary input' c or (b) p 'has primary output' c." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -xref: RO:0004007 -is_a: has_participant ! has participant -created_by: https://orcid.org/0000-0002-6601-2165 -creation_date: 2018-12-13T11:26:17Z - -[Typedef] -id: has_primary_output -name: has primary output -def: "p has primary output c if (a) p has output c and (b) the goal of process is to modify, produce, or transform c." [GOC:dph, GOC:kva, GOC:pt, https://orcid.org/0000-0002-6601-2165] {comment="PMID:27812932"} -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -xref: RO:0004008 -is_a: has_output ! has output -is_a: has_primary_input_or_output ! has primary input or output -created_by: https://orcid.org/0000-0002-6601-2165 -creation_date: 2018-12-13T11:26:32Z +is_a: RO:0002384 ! has developmental potential involving [Typedef] id: has_quality @@ -27869,7 +28314,7 @@ def: "a relation between an independent continuant (the bearer) and a quality, i xref: RO:0000086 property_value: editor_note "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." xsd:string property_value: example_of_usage "this apple has quality this red color" xsd:string -is_a: has_characteristic ! has characteristic +is_a: RO:0000053 ! has characteristic [Typedef] id: has_relational_adjective @@ -27879,16 +28324,6 @@ xref: UBPROP:0000007 property_value: curator_notes "Used to connect a class to an adjectival form of its label. For example, a class with label 'intestine' may have a relational adjective 'intestinal'." xsd:string is_metadata_tag: true -[Typedef] -id: has_role -name: has role -def: "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence" [] -xref: RO:0000087 -property_value: editor_note "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists." xsd:string -property_value: example_of_usage "this person has role this investigator role (more colloquially: this person has this role of investigator)" xsd:string -domain: BFO:0000004 ! independent continuant -is_a: has_characteristic ! has characteristic - [Typedef] id: has_skeleton name: has skeleton @@ -27903,81 +28338,11 @@ is_a: has_part ! has part inverse_of: skeleton_of ! skeleton of is_asymmetric: true -[Typedef] -id: has_soma_location -name: has soma location -def: "Relation between a neuron and a material anatomical entity that its soma is part of." [] -xref: RO:0002100 -domain: CL:0000540 ! neuron -range: UBERON:0000465 ! material anatomical entity -is_a: overlaps ! overlaps -transitive_over: part_of ! part of - [Typedef] id: has_start name: has_start namespace: uberon -[Typedef] -id: has_start_location -name: has start location -def: "x 'has starts location' y if and only if there exists some process z such that x 'starts with' z and z 'occurs in' y" [] -subset: ro-eco -xref: RO:0002231 -domain: BFO:0000015 ! process -range: BFO:0000004 ! independent continuant -holds_over_chain: starts_with occurs_in -is_a: has_part_that_occurs_in ! has part that occurs in - -[Typedef] -id: has_synaptic_IO_in_region -name: has synaptic IO in region -def: "A relationship between a neuron and a region, where the neuron has a functionally relevant number of input and/or output synapses in that region." [] -synonym: "has synaptic input or output in" EXACT [] -xref: RO:0013001 -is_a: has_synaptic_terminal_in ! has synaptic terminal in -transitive_over: part_of ! part of -created_by: https://orcid.org/0000-0002-1373-1705 -creation_date: 2020-07-17T09:26:52Z - -[Typedef] -id: has_synaptic_terminal_in -name: has synaptic terminal in -def: "A general relation between a neuron and some structure in which it either chemically synapses to some target or in which it receives (chemical) synaptic input." [] -xref: RO:0002130 -domain: CL:0000540 ! neuron -is_a: overlaps ! overlaps -transitive_over: part_of ! part of - -[Typedef] -id: has_synaptic_terminal_of -name: has synaptic terminal of -xref: RO:0002006 -is_a: overlaps ! overlaps -inverse_of: has_synaptic_terminal_in ! has synaptic terminal in - -[Typedef] -id: has_target_end_location -name: has target end location -def: "This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from a an initial location to some destination l." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002339 -is_a: results_in_transport_to_from_or_in ! results in transport to from or in -transitive_over: part_of ! part of - -[Typedef] -id: has_target_start_location -name: has target start location -def: "This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from some initial location l to some destination." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002338 -is_a: results_in_transport_to_from_or_in ! results in transport to from or in -transitive_over: part_of ! part of - [Typedef] id: homologous_in name: homologous_in @@ -27993,10 +28358,10 @@ def: "two individual entities d1 and d2 stand in a shares_ancestor_with relation comment: VBO calls this homologous_to xref: RO:0002158 property_value: curator_notes "Consider obsoleting and merging with child relation, 'in homology relationship with'" xsd:string -holds_over_chain: derived_by_descent_from has_derived_by_descendant +holds_over_chain: RO:0002156 RO:0002157 is_symmetric: true is_transitive: true -is_a: evolutionarily_related_to ! evolutionarily related to +is_a: RO:0002320 ! evolutionarily related to [Typedef] id: homology_notes @@ -28055,16 +28420,7 @@ comment: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) xref: RO:0002087 holds_over_chain: starts_with ends_with is_a: preceded_by ! preceded by -inverse_of: immediately_precedes ! immediately precedes - -[Typedef] -id: immediately_precedes -name: immediately precedes -comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y) -subset: ro-eco -xref: RO:0002090 -holds_over_chain: ends_with starts_with -is_a: precedes ! precedes +inverse_of: RO:0002090 ! immediately precedes [Typedef] id: immediately_superficial_to @@ -28093,19 +28449,6 @@ def: "X anterior side of Y <=> if Y is subdivided into two anterior and posterio xref: BSPO:0000123 is_a: part_of ! part of -[Typedef] -id: in_branching_relationship_with -name: in branching relationship with -def: "A relationship that holds between two material entities in a system of connected structures, where the branching relationship holds based on properties of the connecting network." [] -xref: RO:0002375 -property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving branching relationships" xsd:string -property_value: curator_notes "This relation can be used for geographic features (e.g. rivers) as well as anatomical structures (plant branches and roots, leaf veins, animal veins, arteries, nerves)" xsd:string -property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/branching_part_of.png -property_value: seeAlso "https://github.com/obophenotype/uberon/issues/170" xsd:anyURI -domain: BFO:0000040 ! material entity -range: BFO:0000040 ! material entity -is_a: mereotopologically_related_to ! mereotopologically related to - [Typedef] id: in_central_side_of name: in central side of @@ -28238,7 +28581,6 @@ holds_over_chain: develops_from in_taxon holds_over_chain: develops_from_part_of in_taxon holds_over_chain: existence_ends_during in_taxon holds_over_chain: existence_starts_during in_taxon -holds_over_chain: expressed_in in_taxon holds_over_chain: extends_fibers_into in_taxon holds_over_chain: has_developmental_contribution_from in_taxon holds_over_chain: has_part in_taxon @@ -28248,9 +28590,10 @@ holds_over_chain: overlaps in_taxon holds_over_chain: part_of in_taxon holds_over_chain: produced_by in_taxon holds_over_chain: produces in_taxon -holds_over_chain: results_in_developmental_progression_of in_taxon +holds_over_chain: RO:0002206 in_taxon +holds_over_chain: RO:0002295 in_taxon holds_over_chain: supplies in_taxon -is_a: evolutionarily_related_to ! evolutionarily related to +is_a: RO:0002320 ! evolutionarily related to [Typedef] id: in_ventral_side_of @@ -28308,24 +28651,6 @@ def: "X intersects median plane of iff X crosses the midine plane of Y." [] xref: BSPO:0005001 is_a: part_of ! part of -[Typedef] -id: involved_in_or_involved_in_regulation_of -name: involved in or involved in regulation of -def: "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p" [] -xref: RO:0002431 -property_value: editor_note "OWL does not allow defining object properties via a Union" xsd:string -is_a: acts_upstream_of_or_within ! acts upstream of or within -is_a: causal_agent_in_process ! causal agent in process -is_a: functionally_related_to ! functionally related to - -[Typedef] -id: involved_in_regulation_of -name: involved in regulation of -def: "c involved in regulation of p if c is involved in some p' and p' regulates some p" [] -xref: RO:0002428 -is_a: acts_upstream_of ! acts upstream of -is_a: involved_in_or_involved_in_regulation_of ! involved in or involved in regulation of - [Typedef] id: is_count_of name: is count of @@ -28406,116 +28731,29 @@ xref: RO:0002572 domain: BFO:0000141 ! immaterial entity is_a: lumen_of ! lumen of -[Typedef] -id: member_of -name: member of -def: "is member of is a mereological relation between a item and a collection." [] -xref: RO:0002350 -property_value: example_of_usage "An organism that is a member of a population of organisms" xsd:string -is_a: part_of ! part of -inverse_of: has_member ! has member - -[Typedef] -id: mereotopologically_related_to -name: mereotopologically related to -def: "A mereological relationship or a topological relationship" [] -xref: RO:0002323 -property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" xsd:string - [Typedef] id: mutually_spatially_disjoint_with name: mutually spatially disjoint with -name: mutually_spatially_disjoint_with namespace: uberon def: "A is mutually_spatially_disjoint_with B if both A and B are classes, and there exists no p such that p is part_of some A and p is part_of some B." [] xref: RO:0002171 property_value: OMO:0002000 "PREFIX owl: \nPREFIX part_of: \nPREFIX mutually_spatially_disjoint_with: \nCONSTRUCT {\n part_of: a owl:ObjectProperty .\n [\n a owl:Restriction ;\n owl:onProperty part_of: ;\n owl:someValuesFrom ?x ;\n owl:disjointWith [\n a owl:Restriction ;\n owl:onProperty part_of: ;\n owl:someValuesFrom ?y\n ]\n ]\n}\nWHERE {\n ?x mutually_spatially_disjoint_with: ?y .\n}" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern" xsd:anyURI property_value: seeAlso RO:0002163 -expand_assertion_to: "Class: EquivalentTo: (BFO_0000050 some ?X) and (BFO_0000050 some ?Y)" [] is_metadata_tag: true is_class_level: true -[Typedef] -id: negatively_regulated_by -name: negatively regulated by -def: "inverse of negatively regulates" [] -subset: RO:0002259 -xref: RO:0002335 -is_a: regulated_by ! regulated by - -[Typedef] -id: negatively_regulates -name: negatively regulates -def: "p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002212 -holds_over_chain: ends_with negatively_regulates -is_a: causally_upstream_of,_negative_effect ! causally upstream of, negative effect -is_a: regulates ! regulates (processual) -inverse_of: negatively_regulated_by ! negatively regulated by - [Typedef] id: never_in_taxon name: never in taxon -name: never_in_taxon namespace: uberon -def: "S never_in_taxon T iff: S SubClassOf in_taxon only not T." [PMID:20973947] def: "x never in taxon T if and only if T is a class, and x does not instantiate the class expression \"in taxon some T\". Note that this is a shortcut relation, and should be used as a hasValue restriction in OWL." [] xref: RO:0002161 property_value: example_of_usage "tooth SubClassOf 'never in taxon' value 'Aves'" xsd:string property_value: OMO:0002000 "PREFIX rdfs: \nPREFIX owl: \nPREFIX in_taxon: \nPREFIX never_in_taxon: \nCONSTRUCT {\n in_taxon: a owl:ObjectProperty .\n ?x owl:disjointWith [\n a owl:Restriction ;\n owl:onProperty in_taxon: ;\n owl:someValuesFrom ?taxon\n ] .\n ?x rdfs:subClassOf [\n a owl:Restriction ;\n owl:onProperty in_taxon: ;\n owl:someValuesFrom [\n a owl:Class ;\n owl:complementOf ?taxon\n ]\n ] .\n}\nWHERE {\n ?x never_in_taxon: ?taxon .\n}" xsd:string property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints -expand_assertion_to: "Class: EquivalentTo: ?X and (RO_0002162 some ?Y)" [] -expand_assertion_to: "Class: ?X DisjointWith: RO_0002162 some ?Y " [] -is_metadata_tag: true -is_class_level: true - -[Typedef] -id: obsolete_contains -name: contains -name: obsolete contains -namespace: uberon -xref: RO:0001019 -property_value: seeAlso https://github.com/oborel/obo-relations/issues/693 -is_obsolete: true - -[Typedef] -id: occurs_across -name: occurs across -def: "A relationship between a process and a barrier, where the process occurs in a region spanning the barrier. For cellular processes the barrier is typically a membrane. Examples include transport across a membrane and membrane depolarization." [] -xref: RO:0002021 -is_a: has_part_that_occurs_in ! has part that occurs in -created_by: https://orcid.org/0000-0002-7073-9172 -creation_date: 2017-07-20T17:19:37Z - -[Typedef] -id: occurs_in -name: occurs in -def: "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" [] -comment: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: BFO:0000066 -property_value: seeAlso "https://wiki.geneontology.org/Occurs_in" xsd:anyURI -domain: BFO:0000003 ! occurrent -range: BFO:0000004 ! independent continuant -holds_over_chain: part_of occurs_in -inverse_of: contains_process ! contains process -transitive_over: part_of ! part of - -[Typedef] -id: only_in_taxon -name: only in taxon -def: "x only in taxon y if and only if x is in taxon y, and there is no other organism z such that y!=z a and x is in taxon z." [] -xref: RO:0002160 -property_value: editor_note "The original intent was to treat this as a macro that expands to 'in taxon' only ?Y - however, this is not necessary if we instead have supplemental axioms that state that each pair of sibling tax have a disjointness axiom using the 'in taxon' property - e.g.\n\n 'in taxon' some Eukaryota DisjointWith 'in taxon' some Eubacteria" xsd:string -property_value: example_of_usage "lactation SubClassOf 'only in taxon' some 'Mammalia'" xsd:string -property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints -is_a: in_taxon ! in taxon +is_metadata_tag: true +is_class_level: true [Typedef] id: orthogonal_to @@ -28550,7 +28788,7 @@ xref: RO:0002131 holds_over_chain: has_part overlaps holds_over_chain: part_of part_of is_symmetric: true -is_a: mereotopologically_related_to ! mereotopologically related to +is_a: RO:0002323 ! mereotopologically related to transitive_over: part_of ! part of [Typedef] @@ -28566,8 +28804,6 @@ is_metadata_tag: true [Typedef] id: part_of name: part of -name: part_of -namespace: quality namespace: spatial namespace: uberon def: "a core relation that holds between a part and its whole" [] @@ -28590,21 +28826,6 @@ is_transitive: true is_a: overlaps ! overlaps inverse_of: has_part ! has part -[Typedef] -id: part_of_developmental_precursor_of -name: part of developmental precursor of -xref: RO:0002287 -property_value: example_of_usage "'hypopharyngeal eminence' SubClassOf 'part of precursor of' some tongue" xsd:string -holds_over_chain: part_of directly_develops_into -is_a: developmentally_succeeded_by ! developmentally succeeded by - -[Typedef] -id: part_of_structure_that_is_capable_of -name: part of structure that is capable of -def: "this relation holds between c and p when c is part of some c', and c' is capable of p." [] -xref: RO:0002329 -is_a: functionally_related_to ! functionally related to - [Typedef] id: participates_in name: participates in @@ -28616,7 +28837,7 @@ property_value: example_of_usage "this input material (or this output material) property_value: example_of_usage "this investigator participates in this investigation" xsd:string domain: BFO:0000002 ! continuant range: BFO:0000003 ! occurrent -inverse_of: has_participant ! has participant +inverse_of: RO:0000057 ! has participant [Typedef] id: passes_through @@ -28647,29 +28868,6 @@ property_value: preceding_element_is BSPO:0000096 property_value: terminology_notes "gill arch N = PA N-2. the term branchial_arch is ambiguous." xsd:string is_metadata_tag: true -[Typedef] -id: positively_regulated_by -name: positively regulated by -def: "inverse of positively regulates" [] -subset: RO:0002259 -xref: RO:0002336 -is_a: regulated_by ! regulated by - -[Typedef] -id: positively_regulates -name: positively regulates -def: "p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002213 -holds_over_chain: ends_with positively_regulates -holds_over_chain: negatively_regulates negatively_regulates -is_transitive: true -is_a: causally_upstream_of,_positive_effect ! causally upstream of, positive effect -is_a: regulates ! regulates (processual) -inverse_of: positively_regulated_by ! positively regulated by - [Typedef] id: postaxialmost_part_of name: postaxialmost part of @@ -28729,7 +28927,7 @@ domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent holds_over_chain: part_of preceded_by is_transitive: true -is_a: ends_after ! ends after +is_a: RO:0002086 ! ends after inverse_of: precedes ! precedes [Typedef] @@ -28743,7 +28941,7 @@ domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent holds_over_chain: part_of precedes is_transitive: true -is_a: temporally_related_to ! temporally related to +is_a: RO:0002222 ! temporally related to [Typedef] id: preceding_element_is @@ -28756,25 +28954,15 @@ is_metadata_tag: true [Typedef] id: present_in_taxon name: present in taxon -name: present_in_taxon namespace: uberon def: "S present_in_taxon T if some instance of T has some S. This does not means that all instances of T have an S - it may only be certain life stages or sexes that have S" [] -def: "S present_in_taxon T if some instance of T has some S. This does not means that all instances of T have an S - it may only be certain life stages or sexes that have S." [https://orcid.org/0000-0002-6601-2165] comment: The SPARQL expansion for this relation introduces new named classes into the ontology. For this reason it is likely that the expansion should only be performed during a QC pipeline; the expanded output should usually not be included in a published version of the ontology. -synonym: "applicable for taxon" EXACT [] xref: RO:0002175 property_value: OMO:0002000 "PREFIX rdfs: \nPREFIX owl: \nPREFIX in_taxon: \nPREFIX present_in_taxon: \nCONSTRUCT {\n in_taxon: a owl:ObjectProperty .\n ?witness rdfs:label ?label .\n ?witness rdfs:subClassOf ?x .\n ?witness rdfs:subClassOf [\n a owl:Restriction ;\n owl:onProperty in_taxon: ;\n owl:someValuesFrom ?taxon\n ] .\n}\nWHERE {\n ?x present_in_taxon: ?taxon .\n BIND(IRI(CONCAT(\n \"http://purl.obolibrary.org/obo/RO_0002175#\",\n MD5(STR(?x)),\n \"-\",\n MD5(STR(?taxon))\n )) as ?witness)\n BIND(CONCAT(STR(?x), \" in taxon \", STR(?taxon)) AS ?label)\n}" xsd:string property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints is_metadata_tag: true is_class_level: true -[Typedef] -id: process_has_causal_agent -name: process has causal agent -def: "Inverse of 'causal agent in process'" [] -xref: RO:0002608 -is_a: causally_related_to ! causally related to - [Typedef] id: produced_by name: produced by @@ -28840,17 +29028,6 @@ def: "X proximalmost part of Y <=> X is in proximal side of Y and X is adjacent xref: BSPO:0001106 is_a: in_proximal_side_of ! in proximal side of -[Typedef] -id: quality_of -name: quality of -def: "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence" [] -comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. -xref: RO:0000080 -property_value: editor_note "A quality inheres in its bearer at all times for which the quality exists." xsd:string -property_value: example_of_usage "this red color is a quality of this apple" xsd:string -is_a: characteristic_of ! characteristic of -inverse_of: has_quality ! has quality - [Typedef] id: ray_number name: ray number @@ -28862,80 +29039,6 @@ property_value: is_count_of UBERON:0002544 property_value: preceding_element_is BSPO:1000000 is_metadata_tag: true -[Typedef] -id: receives_input_from -name: receives input from -xref: RO:0002485 -property_value: editor_note "See notes for inverse relation" xsd:string -is_a: connected_to ! connected to -inverse_of: sends_output_to ! sends output to - -[Typedef] -id: regulated_by -name: regulated by -def: "inverse of regulates" [] -subset: RO:0002259 -xref: RO:0002334 -domain: BFO:0000015 ! process -range: BFO:0000015 ! process -is_transitive: true -is_a: causally_downstream_of_or_within ! causally downstream of or within - -[Typedef] -id: regulates -name: regulates -name: regulates (processual) -def: "p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002211 -property_value: curator_notes "Regulation precludes parthood; the regulatory process may not be within the regulated process." xsd:string -domain: BFO:0000015 ! process -range: BFO:0000015 ! process -holds_over_chain: ends_with regulates -is_transitive: true -is_a: causally_upstream_of ! causally upstream of -inverse_of: regulated_by ! regulated by - -[Typedef] -id: regulates_characteristic -name: regulates characteristic -def: "A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C." [] -xref: RO:0019000 -property_value: dc-contributor https://orcid.org/0000-0002-8688-6599 -domain: BFO:0000015 ! process -range: PATO:0000001 ! quality -holds_over_chain: regulates regulates_characteristic -is_a: causally_related_to ! causally related to - -[Typedef] -id: regulates_levels_of -name: regulates levels of -def: "p regulates levels of c if p regulates some amount (PATO:0000070) of c" [] -xref: RO:0002332 -property_value: example_of_usage "every cellular sphingolipid homeostasis process regulates_level_of some sphingolipid" xsd:string -domain: BFO:0000015 ! process -range: BFO:0000040 ! material entity -is_a: functionally_related_to ! functionally related to - -[Typedef] -id: related_via_localization_to -name: related via localization to -def: "A relationship that holds via some process of localization" [] -xref: RO:0002337 -property_value: curator_notes "Do not use this relation directly. It is a grouping relation." xsd:string -domain: BFO:0000015 ! process -range: BFO:0000002 ! continuant - -[Typedef] -id: relation_between_physical_entity_and_a_process_or_stage -name: relation between physical entity and a process or stage -xref: RO:0002487 -property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, typically connecting an anatomical entity to a biological process or developmental stage." xsd:string -domain: BFO:0000004 ! independent continuant -range: BFO:0000003 ! occurrent - [Typedef] id: repeated_element_number name: repeated element number @@ -28945,75 +29048,6 @@ comment: The range is currently non-negative integer xref: UBPROP:0000102 is_metadata_tag: true -[Typedef] -id: results_in_acquisition_of_features_of -name: results in acquisition of features of -def: "The relationship that links a specified entity with the process that results in an unspecified entity acquiring the features and characteristics of the specified entity" [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002315 -property_value: example_of_usage "an annotation of gene X to cell differentiation with results_in_maturation_of CL:0000057 (fibroblast) means that at the end of the process the input cell that did not have features of a fibroblast, now has the features of a fibroblast." xsd:string -range: UBERON:0000061 ! anatomical structure -is_a: results_in_changes_to_anatomical_or_cellular_structure ! results in changes to anatomical or cellular structure -is_a: results_in_developmental_progression_of ! results in developmental progression of - -[Typedef] -id: results_in_assembly_of -name: results in assembly of -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002588 -is_a: results_in_formation_of_anatomical_entity ! results in formation of anatomical entity -is_a: results_in_organization_of ! results in organization of - -[Typedef] -id: results_in_breakdown_of -name: results in breakdown of -def: "p results in breakdown of c if and only if the execution of p leads to c no longer being present at the end of p" [] -xref: RO:0002586 -is_a: has_input ! has input - -[Typedef] -id: results_in_changes_to_anatomical_or_cellular_structure -name: results in changes to anatomical or cellular structure -def: "p has anatomical participant c iff p has participant c, and c is an anatomical entity" [] -xref: RO:0040036 -is_a: has_participant ! has participant -created_by: https://orcid.org/0000-0002-6601-2165 -creation_date: 2018-09-26T01:08:58Z - -[Typedef] -id: results_in_development_of -name: results in development of -def: "p 'results in development of' c if and only if p is a developmental process and p results in the state of c changing from its initial state as a primordium or anlage through its mature state and to its final state." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002296 -property_value: example_of_usage "every flower development (GO:0009908) results in development of some flower (PO:0009046)" xsd:string -is_a: results_in_changes_to_anatomical_or_cellular_structure ! results in changes to anatomical or cellular structure -is_a: results_in_developmental_progression_of ! results in developmental progression of - -[Typedef] -id: results_in_developmental_progression_of -name: results in developmental progression of -def: "p results in the developmental progression of s iff p is a developmental process and s is an anatomical entity and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss)." [] -xref: RO:0002295 -property_value: editor_note "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint." xsd:string -property_value: seeAlso Ontology:extensions -domain: GO:0008150 ! biological_process -range: UBERON:0001062 ! anatomical entity -is_a: developmentally_related_to ! developmentally related to - -[Typedef] -id: results_in_disassembly_of -name: results in disassembly of -xref: RO:0002590 -is_a: results_in_breakdown_of ! results in breakdown of -is_a: results_in_organization_of ! results in organization of - [Typedef] id: results_in_distribution_of name: results in distribution of @@ -29027,106 +29061,7 @@ name: results in fission of name: results_in_fission_of namespace: external xref: GOREL:0002004 -is_a: has_participant ! has participant - -[Typedef] -id: results_in_formation_of_anatomical_entity -name: results in formation of anatomical entity -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002297 -property_value: example_of_usage "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists." xsd:string -property_value: example_of_usage "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)" xsd:string -is_a: has_output ! has output -is_a: results_in_developmental_progression_of ! results in developmental progression of -inverse_of: formed_as_result_of ! formed as result of - -[Typedef] -id: results_in_fusion_of -name: results in fusion of -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0012008 -is_a: results_in_organization_of ! results in organization of -created_by: https://orcid.org/0000-0003-1813-6857 -creation_date: 2021-02-26T07:28:29Z - -[Typedef] -id: results_in_growth_of -name: results in growth of -xref: RO:0002343 -property_value: example_of_usage "'pollen tube growth' results_in growth_of some 'pollen tube'" xsd:string -is_a: results_in_changes_to_anatomical_or_cellular_structure ! results in changes to anatomical or cellular structure -is_a: results_in_developmental_progression_of ! results in developmental progression of - -[Typedef] -id: results_in_maturation_of -name: results in maturation of -def: "The relationship that links an entity with a process that results in the progression of the entity over time that is independent of changes in it's shape and results in an end point state of that entity." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002299 -property_value: example_of_usage " an annotation of gene X to cell maturation with results_in_maturation_of CL:0000057 (fibroblast) means that the fibroblast is mature at the end of the process" xsd:string -property_value: example_of_usage "bone maturation (GO:0070977) results_in_maturation_of bone (UBERON:0001474)" xsd:string -is_a: results_in_changes_to_anatomical_or_cellular_structure ! results in changes to anatomical or cellular structure -is_a: results_in_developmental_progression_of ! results in developmental progression of - -[Typedef] -id: results_in_morphogenesis_of -name: results in morphogenesis of -def: "The relationship that links an entity with the process that results in the formation and shaping of that entity over time from an immature to a mature state." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002298 -property_value: example_of_usage "an annotation of gene X to cell morphogenesis with results_in_morphogenesis_of CL:0000540 (neuron) means that at the end of the process an input neuron has attained its shape." xsd:string -property_value: example_of_usage "tongue morphogenesis (GO:0043587) results in morphogenesis of tongue (UBERON:0001723)" xsd:string -is_a: results_in_changes_to_anatomical_or_cellular_structure ! results in changes to anatomical or cellular structure -is_a: results_in_developmental_progression_of ! results in developmental progression of - -[Typedef] -id: results_in_movement_of -name: results in movement of -def: "Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c" [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002565 -property_value: curator_notes "" xsd:string -is_a: results_in_changes_to_anatomical_or_cellular_structure ! results in changes to anatomical or cellular structure - -[Typedef] -id: results_in_organization_of -name: results in organization of -def: "p results in organization of c iff p results in the assembly, arrangement of constituent parts, or disassembly of c" [] -xref: RO:0002592 -is_a: results_in_changes_to_anatomical_or_cellular_structure ! results in changes to anatomical or cellular structure - -[Typedef] -id: results_in_transport_across -name: results in transport across -def: "Holds between p and m when p is a transportation or localization process and the outcome of this process is to move c from one location to another, and the route taken by c follows a path that crosses m." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -xref: RO:0002342 -is_a: occurs_across ! occurs across -is_a: results_in_transport_to_from_or_in ! results in transport to from or in - -[Typedef] -id: results_in_transport_along -name: results in transport along -def: "Holds between p and l when p is a transportation or localization process and the outcome of this process is to move c from one location to another, and the route taken by c follows a path that is aligned_with l " [] -xref: RO:0002341 -is_a: related_via_localization_to ! related via localization to - -[Typedef] -id: results_in_transport_to_from_or_in -name: results in transport to from or in -xref: RO:0002344 -property_value: example_of_usage "'mitochondrial transport' results_in_transport_to_from_or_in some mitochondrion (GO:0005739)" xsd:string -is_a: related_via_localization_to ! related via localization to +is_a: RO:0000057 ! has participant [Typedef] id: rhombomere_number @@ -29158,17 +29093,6 @@ def: "Closer to the right side of the organism. Example: The dorsal fin is right xref: BSPO:0000111 is_transitive: true -[Typedef] -id: role_of -name: role of -def: "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence" [] -comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. -xref: RO:0000081 -property_value: editor_note "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists." xsd:string -property_value: example_of_usage "this investigator role is a role of this person" xsd:string -is_a: characteristic_of ! characteristic of -inverse_of: has_role ! has role - [Typedef] id: scheduled_for_obsoletion_on_or_after name: scheduled for obsoletion on or after @@ -29187,13 +29111,6 @@ namespace: uberon xref: http://www.w3.org/2000/01/rdf-schema#seeAlso is_metadata_tag: true -[Typedef] -id: sends_output_to -name: sends output to -xref: RO:0002486 -property_value: editor_note "This is an exploratory relation. The label is taken from the FMA. It needs aligned with the neuron-specific relations such as has postsynaptic terminal in." xsd:string -is_a: connected_to ! connected to - [Typedef] id: serially_homologous_to name: serially homologous to @@ -29201,7 +29118,7 @@ namespace: uberon xref: RO:0002159 is_symmetric: true is_transitive: true -is_a: evolutionarily_related_to ! evolutionarily related to +is_a: RO:0002320 ! evolutionarily related to [Typedef] id: sexually_homologous_to @@ -29219,7 +29136,7 @@ subset: ro-eco xref: RO:0002082 is_symmetric: true is_transitive: true -is_a: before_or_simultaneous_with ! before or simultaneous with +is_a: RO:0002081 ! before or simultaneous with [Typedef] id: site_of @@ -29256,26 +29173,6 @@ namespace: uberon xref: UBPROP:0000201 is_metadata_tag: true -[Typedef] -id: spatially_coextensive_with -name: spatially coextensive with -def: "x spatially_coextensive_with y if and inly if x and y have the same location" [] -xref: RO:0002379 -property_value: curator_notes "This relation is added for formal completeness. It is unlikely to be used in many practical scenarios" xsd:string -property_value: example_of_usage "A lump of clay and a statue" xsd:string -is_a: overlaps ! overlaps - -[Typedef] -id: spatially_disjoint_from -name: spatially disjoint from -def: "A is spatially_disjoint_from B if and only if they have no parts in common" [] -subset: ro-eco -xref: RO:0002163 -property_value: curator_notes "Note that it would be possible to use the relation to label the relationship between a near infinite number of structures - between the rings of saturn and my left earlobe. The intent is that this is used for parsiomoniously for disambiguation purposes - for example, between siblings in a jointly exhaustive pairwise disjointness hierarchy" xsd:string -property_value: editor_note "There are two ways to encode this as a shortcut relation. The other possibility to use an annotation assertion between two classes, and expand this to a disjointness axiom. " xsd:string -property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern" xsd:anyURI -is_a: mereotopologically_related_to ! mereotopologically related to - [Typedef] id: starts name: starts @@ -29284,7 +29181,7 @@ def: "inverse of starts with" [] subset: ro-eco xref: RO:0002223 is_a: part_of ! part of -is_a: temporally_related_to ! temporally related to +is_a: RO:0002222 ! temporally related to inverse_of: starts_with ! starts with [Typedef] @@ -29304,7 +29201,7 @@ xref: RO:0002224 property_value: example_of_usage "Every insulin receptor signaling pathway starts with the binding of a ligand to the insulin receptor" xsd:string is_transitive: true is_a: has_part ! has part -is_a: temporally_related_to ! temporally related to +is_a: RO:0002222 ! temporally related to [Typedef] id: structure_notes @@ -29363,16 +29260,8 @@ name: synapsed by namespace: uberon def: "Relation between an anatomical structure (including cells) and a neuron that chemically synapses to it. " [] xref: RO:0002103 -is_a: receives_input_from ! receives input from -inverse_of: synapsed_to ! synapsed to - -[Typedef] -id: synapsed_to -name: synapsed to -def: " Relation between a neuron and an anatomical structure (including cells) that it chemically synapses to.\n " [] -comment: N1 synapsed_to some N2 \nExpands to:\nN1 SubclassOf ( \n has_part some (\n ‘pre-synaptic membrane ; GO:0042734’ that part_of some ( \n ‘synapse ; GO:0045202’ that has_part some (\n ‘post-synaptic membrane ; GO:0045211’ that part_of some N2)))) -xref: RO:0002120 -is_a: sends_output_to ! sends output to +is_a: RO:0002485 ! receives input from +inverse_of: RO:0002120 ! synapsed to [Typedef] id: taxon_notes @@ -29382,16 +29271,6 @@ def: "Notes on the how instances of this class vary across species." [https://or xref: UBPROP:0000008 is_metadata_tag: true -[Typedef] -id: temporally_related_to -name: temporally related to -comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. -subset: ro-eco -xref: RO:0002222 -property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." xsd:string -domain: BFO:0000003 ! occurrent -range: BFO:0000003 ! occurrent - [Typedef] id: term_tracker_item name: term tracker item @@ -29471,7 +29350,7 @@ property_value: example_of_usage "inferior epigastric vein tributary_of external property_value: seeAlso http://dbpedia.org/ontology/drainsTo property_value: seeAlso "http://en.wikipedia.org/wiki/Tributary" xsd:anyURI is_a: connected_to ! connected to -is_a: in_branching_relationship_with ! in branching relationship with +is_a: RO:0002375 ! in branching relationship with [Typedef] id: trunk_part_of @@ -29500,25 +29379,3 @@ property_value: is_count_of UBERON:0002412 property_value: preceding_element_is BSPO:0000096 is_metadata_tag: true -[Typedef] -id: vessel_drains_blood_from -name: vessel drains blood from -def: "x vessel drains blood from y if and only if x is a vessel that drains blood directly or indirectly from an anatomical structure y." [] -xref: RO:0020102 -property_value: dc-contributor https://orcid.org/0000-0001-6677-8489 -property_value: dcterms-date "2024-02-01T10:09:41Z" xsd:dateTime -property_value: example_of_usage "cystic vein vessel drains blood from gallbladder" xsd:string -range: UBERON:0000061 ! anatomical structure -is_a: drains ! drains - -[Typedef] -id: vessel_supplies_blood_to -name: vessel supplies blood to -def: "x vessel supplies blood to y if and only if x is a vessel that supplies blood directly or indirectly to an anatomical structure y." [] -xref: RO:0020101 -property_value: dc-contributor https://orcid.org/0000-0001-6677-8489 -property_value: dcterms-date "2024-02-01T10:09:22Z" xsd:dateTime -property_value: example_of_usage "brachial artery vessel supplies blood to brachialis muscle" xsd:string -range: UBERON:0000061 ! anatomical structure -is_a: supplies ! supplies - diff --git a/uberon-base.owl b/uberon-base.owl index e97daf5477..b8a95b8ff9 100755 --- a/uberon-base.owl +++ b/uberon-base.owl @@ -18,7 +18,7 @@ xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#" xmlns:NIF_Subcellular="http://www.neurolex.org/wiki/"> - + @@ -182,7 +182,7 @@ ZFA part_of NCBITaxon:7954 ZFS part_of NCBITaxon:7954 Aurelie Comte, Bill Bug, Catherine Leroy, Duncan Davidson and Trish Whetzel are also contributors. However their ORCIDs were not found. - 2024-09-03 + 2024-11-25 http://uberon.org @@ -10172,7 +10172,6 @@ WBbt:0005739 Wikipedia:Head XAO:0003024 - ZFA:0001114 galen:Head head (volume) adult head @@ -40540,7 +40539,7 @@ ZFA:0000560 ovarian duct ovarian tube - uterine tube + uterine tube uberon female reproductive tracts oviducts @@ -42288,7 +42287,6 @@ - Anatomical system of ion binding, a pumping mechanism, and an efficient vascular system; consisting of the blood, heart, and blood and lymph vessels, respectively.[AAO] We should divest ourselves of the view that earlier vertebrate groups were 'on their way' to becoming mammals, as clearly they were not such visionaries. Neither were their systems 'imperfect' as earlier anatomists thought. Instead, their circulatory systems served them well to address the ecological demands arising from their lifestyles.[well established][VHOG] AAO:0000959 @@ -42299,7 +42297,6 @@ uberon systema cardiovasculare UBERON:0001009 - circulatory system http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg @@ -143836,7 +143833,6 @@ TAO:0000366 UMLS:C0175392 Wikipedia:Dorsal_raphe_nucleus - ZFA:0000366 neuronames:512 cell group b7 dorsal nucleus of the raphe @@ -144578,6 +144574,12 @@ + + + + + + @@ -144936,7 +144938,7 @@ - + @@ -144969,14 +144971,14 @@ epithelium of bronchiole - + - + FMA @@ -145084,7 +145086,7 @@ - + @@ -145118,7 +145120,7 @@ zona glomerulosa of adrenal gland http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png - + @@ -145131,7 +145133,7 @@ - + FMA @@ -145161,8 +145163,8 @@ - - + + @@ -145188,11 +145190,11 @@ zona fasciculata of adrenal gland http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png - + - + @@ -145205,13 +145207,13 @@ - + FMA - + FMA @@ -145240,8 +145242,8 @@ - - + + @@ -145267,11 +145269,11 @@ zona reticularis of adrenal gland http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png - + - + @@ -145284,13 +145286,13 @@ - + FMA - + FMA @@ -145449,7 +145451,7 @@ - + @@ -145483,14 +145485,14 @@ main ciliary ganglion http://upload.wikimedia.org/wikipedia/commons/3/30/Augennerven.jpg - + - + http://orcid.org/0000-0001-9114-8737 inferred @@ -145647,7 +145649,7 @@ - + The femoral artery is a large artery in the muscles of the thigh. It is a continuation of external iliac artery where it enters the femoral triangle at the mid inguinal point behind the inguinal ligament. It leaves femoral triangle through apex beneath the sartorius muscle. It enters the popliteal fossa by passing through the 5th osseo-aponeurotic(adductor hiatus) opening of adductor magnus where it becomes the Popliteal Artery. [WP,unvetted]. Artery which supplies blood via branches to the hindlimbs.[AAO] AAO:0010222 @@ -145670,14 +145672,14 @@ femoral artery http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray546.png - + - + FMA WP @@ -145718,9 +145720,9 @@ - - - + + + The truncus arteriosus and bulbus cordis are divided by the aorticopulmonary septum. The truncus arteriosus gives rise to the ascending aorta and the pulmonary trunk. The bulbus cordis gives rise to the smooth parts (outflow tract) of the left and right ventricles. assume spelling error for ncit EHDAA2:0004143 @@ -145738,15 +145740,15 @@ truncus arteriosus - + - + - + @@ -145765,19 +145767,19 @@ - + MA - + EHDAA2 - + EHDAA2 @@ -145808,7 +145810,7 @@ - + The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves[GO]. Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves[ZFA]. Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves.[TAO] relationship loss: develops_from endocardial ring (TAO:0005072)[TAO] @@ -145840,14 +145842,14 @@ endocardial cushion http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray465.png - + - + ZFA @@ -145930,8 +145932,8 @@ - - + + The sinus venosus is a large cardiac chamber at the inflow tract that receives venous blood from systemic circulation. precedes the atrium on the venous side of the chordate heart. Heart region collecting blood from the paired common cardinal veins and delivering to the atrium. One of four components of the heart. The sinus venosus also acts as a pacemaker and is the first to contract. Kimmel et al, 1995.[TAO] @@ -145967,24 +145969,24 @@ sinus venosus http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray465.png - + - + - + VHOG - + Bgee:AN @@ -146386,7 +146388,7 @@ - + @@ -146417,7 +146419,7 @@ - + The dermis is a layer of skin between the epidermis (with which it makes up the skin) and subcutaneous tissues, and is composed of two layers, the papillary and reticular dermis[WP]. Consider adding a layer-of-skin grouping class for all skin layers @@ -146457,24 +146459,24 @@ dermis http://upload.wikimedia.org/wikipedia/commons/2/23/EpidermisPainted.svg - + - + - + FMA - + definitional @@ -146531,14 +146533,14 @@ - + - + A fibrous remnant of the allantoic stalk, a narrow fetal canal connecting the apex of the urinary bladder with the umbilicus located in the space of Retzius, between the transversalis fascia anteriorly and the peritoneum posteriorly. its lumen is normally obliterated during development, transforming the urachus into a solid cord, a functionless remnant that persists throughout life as the median umbilical ligament; failure of complete lumen obliteration may result in distinct congenital urachal remnant anomalies[MP]. A fetal canal connecting the bladder with the allantois, persisting throughout life as a cord (median umbilical ligament). [TFD][VHOG] urachal @@ -146563,11 +146565,11 @@ urachus http://upload.wikimedia.org/wikipedia/commons/6/63/Gray1156.png - + - + @@ -146580,13 +146582,13 @@ - + EHDAA2 - + EHDAA2 @@ -146849,7 +146851,7 @@ - + @@ -146868,7 +146870,7 @@ - + Lowermost layer of the integumentary system in vertebrates. Types of cells that are found in the hypodermis are fibroblasts, adipose cells, and macrophages. It is derived from the mesoderm, but unlike the dermis, it is not derived from the dermatome region of the mesoderm. The hypodermis is used mainly for fat storage[WP]. A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells. Le Guellec et al, 2004.[TAO] @@ -146904,24 +146906,24 @@ hypodermis http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg - + - + - + ZFA - + FMA-modified @@ -147008,8 +147010,8 @@ - - + + @@ -147052,24 +147054,24 @@ hair follicle https://upload.wikimedia.org/wikipedia/commons/4/4d/Hair_follicle-en.svg - + - + - + FMA - + DOI:10.1016/j.cub.2008.12.005 @@ -147109,7 +147111,7 @@ - + The main part of the hair which is composed of trichocytes and is divided into the cortex and medulla. TODO - add distinct subclasses for coat hair vs vibrissa hair TODO - check definition of trichocyte in CL @@ -147129,14 +147131,14 @@ hair shaft - + - + DOI:10.1016/j.cub.2008.12.005 @@ -147631,8 +147633,8 @@ - - + + A cardiac ventricle that is in the right side of the heart. The muscular chamber on the right and in front of the left ventricle. It generally receives venous blood from the right atrium and conveys it into the pulmonary artery. [(1988)_Dorian_AF, Amsterdam, Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B._Anatomy, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier's_Encyclopaedic_Dictionary_of_Medicine][VHOG] @@ -147665,24 +147667,24 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.3/assets/3d-vh-f-heart.glb https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.3/assets/3d-vh-m-heart.glb - + - + - + PMID:17276708 - + cjm @@ -147861,7 +147863,7 @@ - + Cardiac chamber through which blood leaves the heart. A chamber of the heart that receives blood from one or more atria and pumps it by muscular contraction into the arteries.[AAO] One of four heart chambers.[TAO] @@ -147900,14 +147902,14 @@ cardiac ventricle - + - + Bgee:AN @@ -147964,8 +147966,8 @@ - - + + The vascular channel in the fetus passing through the liver and joining the umbilical vein with the inferior vena cava. add class for fetal shunt? The vascular channel in the fetus passing through the liver and joining the umbilical vein with the inferior vena cava. [TFD][VHOG] @@ -147987,11 +147989,11 @@ ductus venosus http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png - + - + @@ -148004,13 +148006,13 @@ - + EHDAA2 - + cjm @@ -148072,7 +148074,7 @@ - + A cardiac ventricle that is in the left side of the heart. Thick-walled muscular chamber constituting the left border and apex of the heart. It receives oxygenated blood from the left atrium through the mitral orifice and send it off into the aorta. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] @@ -148106,14 +148108,14 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.3/assets/3d-vh-f-heart.glb https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.3/assets/3d-vh-m-heart.glb - + - + GO @@ -148258,8 +148260,8 @@ - - + + A valve at the opening of the sinus venosus into the primordial atrium[TFD,modified]. in humans and mouse this is the opening from SV into right atrium. This class represents the valve connecting the SV to any atrium and is applicable to animals with a single atrium FMA:71120 @@ -148273,24 +148275,24 @@ sinoatrial valve - + - + - + ZFA-modified - + ZFA-modified @@ -148319,7 +148321,7 @@ - + @@ -148332,7 +148334,7 @@ - + The part of the heart connecting the atrium to the cardiac ventricle[ZFA]. In the developing heart, the constriction between the atrium and ventricle constitutes the atrial canal, and indicates the site of the future atrioventricular valves[WP]. The canal connecting the primitive atrium and ventricle in fishes and amniotes embryo. [TFD][VHOG] The heart is the first organ to form and function in a vertebrate. (...) Septation of the AV canal is initiated with the formation of inferior and superior endocardial cushions in response to signaling from the overlying myocardium. (...) Analysis of zebrafish mutants with cardiovascular defects uncovered a previously unexpected level of conservation between zebrafish and human cardiovascular physiology.[uncertain][VHOG] @@ -148362,24 +148364,24 @@ atrioventricular canal http://upload.wikimedia.org/wikipedia/commons/d/d8/Gray464.png - + - + - + EHDAA2 - + Bgee:AN @@ -148455,8 +148457,8 @@ - - + + The lateral thoracic vein is a tributary of the axillary vein. It runs with the lateral thoracic artery and drains the serratus ventralis muscle and the Pectoralis major muscle. Normally, the thoracoepigastric vein exists between this vein and superficial epigastric vein (a tributary of femoral vein), to act as a shunt for blood if the portal system (through the liver) develops hypertension or a blockage. [WP,unvetted]. EMAPA:37163 @@ -148472,24 +148474,24 @@ lateral thoracic vein http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png - + - + - + FMA/obol - + FMA/obol @@ -148535,7 +148537,7 @@ - + Companion vein of the thoracodorsal artery, draining the apical part of the latissimus dorsi and merging with the circumflex scapular vein to form a subscapular vein. EMAPA:37198 @@ -148546,14 +148548,14 @@ thoracodorsal vein - + - + FMA/obol @@ -149247,7 +149249,7 @@ - + @@ -149291,14 +149293,14 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.4/assets/3d-vh-f-skin.glb https://cdn.humanatlas.io/digital-objects/ref-organ/skin-male/v1.3/assets/3d-vh-m-skin.glb - + - + Wikipathways:WP2062 @@ -149603,7 +149605,7 @@ - + @@ -149667,7 +149669,7 @@ limb - + @@ -149680,7 +149682,7 @@ - + extends to stem tetrapods such as Eusthenopteron @@ -150184,7 +150186,7 @@ - + @@ -150236,14 +150238,14 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.3/assets/3d-vh-m-spleen.glb https://upload.wikimedia.org/wikipedia/commons/d/d6/Illu_spleen.jpg - + - + multiple sources - true spleen appear in jawed vertebrates @@ -150301,22 +150303,22 @@ - + - + - - + + @@ -150397,19 +150399,19 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb https://upload.wikimedia.org/wikipedia/commons/6/64/Leber_Schaf.jpg - + - + - + - + @@ -150424,25 +150426,25 @@ - + ZFA - + ZFA-weakened - + EHDAA2 - + http://www.stembook.org/node/512 @@ -150720,7 +150722,7 @@ - + @@ -150773,7 +150775,7 @@ https://upload.wikimedia.org/wikipedia/commons/b/b1/GallbladderAnatomy-en.svg https://upload.wikimedia.org/wikipedia/commons/f/f4/Abdomal_organs.svg - + @@ -150786,7 +150788,7 @@ - + definitional @@ -151153,7 +151155,7 @@ - + @@ -151166,7 +151168,7 @@ - + @@ -151210,24 +151212,24 @@ kidney - + - + - + FMA - + definitional @@ -151407,7 +151409,7 @@ - + @@ -151451,7 +151453,7 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.2/assets/3d-vh-f-small-intestine.glb https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.2/assets/3d-vh-m-small-intestine.glb - + @@ -151465,7 +151467,7 @@ - + Wikipedia @@ -151758,8 +151760,8 @@ - - + + @@ -151803,11 +151805,11 @@ Once the more complex mesonephros forms the pronephros undergoes apoptosis in amphibians. In fishes the nephron degenerates but the organ remains and becomes a component of the immune system[Wikipedia:Pronephros]. // TODO - check developmental relationships. Note that we previously include the ZFA/XAO terms under the more specific 'pronephric kidney', but these are now merged. TODO GCI: relationship: capable_of GO:0030104 pronephros - + - + @@ -151820,13 +151822,13 @@ - + OG - + ZFA @@ -152235,7 +152237,7 @@ - + @@ -152261,14 +152263,14 @@ solitary tract nuclear complex - + - + MA-abduced @@ -152573,7 +152575,7 @@ - + @@ -152612,14 +152614,14 @@ superior olivary complex http://upload.wikimedia.org/wikipedia/commons/4/46/Gray713.png - + - + NIFSTD @@ -152722,7 +152724,7 @@ - + @@ -152769,14 +152771,14 @@ cerebellar cortex https://upload.wikimedia.org/wikipedia/commons/a/a7/Cerebellum_NIH.png - + - + Wikipedia @@ -152962,7 +152964,7 @@ - + @@ -153000,14 +153002,14 @@ anterior lobe of cerebellum http://upload.wikimedia.org/wikipedia/commons/1/13/CerebellumRegions.jpg - + - + Wikipedia @@ -153171,7 +153173,7 @@ - + @@ -153190,7 +153192,7 @@ - + A cardial valve in the atrioventricular region that separates the atrium from the ventricle and prevent backflow from the ventricles into the atria during systole. The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. Hu et al. 2001.[TAO] Valve in the heart through which blood flows from the atria to the ventricles. [TFD][VHOG] @@ -153215,24 +153217,24 @@ atrioventricular valve - + - + - + EHDAA2 - + FMA @@ -153435,9 +153437,9 @@ - - - + + + An atrioventricular valve that is part of the outflow part of the left atrium. @@ -153472,34 +153474,34 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.3/assets/3d-vh-f-heart.glb https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.3/assets/3d-vh-m-heart.glb - + - + - + - + FMA - + FMA - + FMA @@ -153562,7 +153564,7 @@ - + Layer of the dentate gyrus lying deep to the granule cell layer, within the opening of the C or V formed by the granule cell layer characterized by loosely packed polymorphic cells. BAMS:Hil BAMS:hdg @@ -153585,14 +153587,14 @@ Merge with CA4? hilus of dentate gyrus - + - + NIFSTD @@ -153883,7 +153885,7 @@ - + @@ -153937,7 +153939,7 @@ subcommissural organ http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png - + @@ -153950,7 +153952,7 @@ - + MA @@ -154126,7 +154128,7 @@ - + Nucleus that is part of the oculomotor nerve complex consisting of preganglionic parasympathetic neurons situated close to the midline at the level of the superior colliculus (Heimer, the Human Brain and Spinal Cord, 1994, pg 244). @@ -154178,14 +154180,14 @@ parvocellular oculomotor nucleus https://github.com/obophenotype/uberon/issues/2658 - + - + FMA MA ZFA @@ -154685,8 +154687,8 @@ - - + + A group of neuron cell bodies that form a thin, caplike configuration over the dorsolateral aspect of the crus cerebri; many of its cells are acetylcholinesterase positive. @@ -154713,24 +154715,24 @@ UBERON:0002144 peripeduncular nucleus - + - + - + NIFSTD - + MA @@ -154812,7 +154814,7 @@ - + IP BAMS:IPN @@ -154843,14 +154845,14 @@ interpeduncular nucleus - + - + NIF @@ -155157,7 +155159,7 @@ - + @@ -155215,14 +155217,14 @@ locus ceruleus http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png - + - + check ZFA NIFSTD @@ -155350,7 +155352,7 @@ - + Nucleus containing parasympathetic neurons giving rise to the parasympathetic division of the facial nerve, innervating the salivary glands (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 703). @@ -155386,14 +155388,14 @@ superior salivatory nucleus http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray788.png - + - + definitional @@ -155854,7 +155856,7 @@ - + Regional part of medullary white matter (according to Neuronames) primarily found at the level of the pons, consisting of a very large bundle of fibers originating in the pontine nuclei projecting to the cerebellum (MM). BAMS:BP @@ -155889,14 +155891,14 @@ middle cerebellar peduncle http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray705.png - + - + FMA @@ -156129,12 +156131,12 @@ - + - + A nucleus of the lateral medullary nuclear complex. @@ -156167,7 +156169,7 @@ lateral reticular nucleus - + @@ -156180,7 +156182,7 @@ - + FMA @@ -156389,7 +156391,7 @@ - + The nucleus raphe magnus, located directly rostral to the raphe obscurus, is afferently stimulated from axons in the spinal cord and cerebellum. This makes the magnus a likely candidate for part of the motor system; however, it seems to participate in the endogenous analgesia system. The magnus receives descending afferents from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, parvocellular reticular nucleus and the prelimbic, infralimbic, medial and lateral precentral cortices . All of these brain areas influence the main function of the raphe magnus. The main function of the magnus is mostly pain mediation; in fact it sends projections to the dorsal horn of the spinal cord to directly inhibit pain. The periaquiductal gray, the epicenter of analgesia, sends efferent connections to the nucleus raphe magnus in when it is stimulated by opiates (endogenous or otherwise). Electrical stimulation of the PAG produces analgesia, as well as administration of morphine to the PAG or n.r. magnus. The antinociceptic effects of electrical stimulation of the PAG can be blocked by administering naloxone, an opiate antagonist, to the n.r. magnus. All of this seems to indicate that the magnus is part of the endogenous opiate system, and acts to inhibit pain in the spinal cord. [WP,unvetted]. @@ -156422,14 +156424,14 @@ nucleus raphe magnus http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png - + - + FMA NIF Wikipedia @@ -156518,7 +156520,7 @@ - + The nucleus raphe pallidus receives afferent connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Also, the pallidus receives afferents from the medial preoptic area, median preoptic nucleus and lateral paragigantocellular reticular nuclei . The pallidus has recently been shown to be involved in the activation of a fever as an immunoreaction. It has been implied that the preoptic area is constantly inhibiting the raphe pallidus, especially the rostral portion, with GABA. When the preoptic area receives immune signals from the body, the inhibition stops and the rostral portion of the raphe pallidus excites the intermediolateral cell column, which induces a fever . The raphe pallidus has also been known to mediate the tachycardia response, an extremely high heart rate known to be incited by emotional or psychological stress. Microinjections of a GABA-a antagonist into the raphe pallidus, induces an increased heart rate. Conversely, microinjections of muscimol, a GABA-a agonist, inhibit tachycardia in rats under air-stress stimuli. In both of these cases, GABA is mediating two different sympathetic responses, so clearly the nucleus raphe pallidus is a far more a complex nucleus than previously thought. [WP,unvetted]. @@ -156547,14 +156549,14 @@ nucleus raphe pallidus http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png - + - + FMA @@ -156840,7 +156842,7 @@ - + Nucleus in the caudal medulla that receive projections primarily from ipsilateral dorsal root ganglion cells via the posterior column of the spinal cord. in species with reduced hindlimbs (e.g. cetaceans) the size of this nucleus is reduced @@ -156873,7 +156875,7 @@ gracile nucleus http://upload.wikimedia.org/wikipedia/commons/d/df/Gray688.png - + @@ -156888,7 +156890,7 @@ - + Wikipedia @@ -156971,7 +156973,7 @@ - + @@ -157016,7 +157018,7 @@ area postrema http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png - + @@ -157029,7 +157031,7 @@ - + MA ZFA @@ -157317,7 +157319,7 @@ - + The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]. Layer that lines the lumen of the heart.[TAO] Part of the heart comprised of thin serous membrane, composed of endothelial tissue, that lines the interior of the heart.[AAO] @@ -157359,14 +157361,14 @@ endocardium http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png - + - + Bgee:AN @@ -157686,15 +157688,15 @@ - + - - + + @@ -157726,24 +157728,24 @@ alveolar sac - + - + - + MA - + FMA @@ -158554,7 +158556,7 @@ - + The white substance of the spinal cord lying on either side between the ventral median fissure and the ventral roots of the spinal nerves. FMA:74003 @@ -158579,14 +158581,14 @@ ventral funiculus of spinal cord http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg - + - + FMA-abduced-lr @@ -158754,7 +158756,7 @@ - + @@ -158797,14 +158799,14 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-female/v1.1/assets/3d-vh-f-main-bronchus.glb https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-male/v1.1/assets/3d-vh-m-main-bronchus.glb - + - + EHDAA2 @@ -158850,7 +158852,7 @@ - + @@ -158907,14 +158909,14 @@ lobar bronchus http://upload.wikimedia.org/wikipedia/commons/d/df/Illu_quiz_lung05.jpg - + - + FMA @@ -158965,7 +158967,7 @@ - + @@ -159028,14 +159030,14 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb - + - + FMA @@ -159168,8 +159170,8 @@ - - + + The conducting airway of the lungs found terminal to the bronchi; these structures contain neither cartilage nor mucous-secreting glands; the epithelium of the bronchioles becomes thinner with each branching. bronchiolar lacks submucosa and cartilage plates; they have 3 layers: mucosa, muscular layer and outer layer @@ -159199,24 +159201,24 @@ bronchiole https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png - + - + - + MA - + FMA @@ -159352,7 +159354,7 @@ - + @@ -159392,14 +159394,14 @@ respiratory bronchiole https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png - + - + ISBN:0123813611 @@ -159601,8 +159603,8 @@ - - + + Part of the hippocampal formation that is bounded by the entorhinal cortex and area CA1. It is characterized on the CA1 border by an abrupt widening of the pyramidal cell layer. A molecular layer is present that is continuous with that of CA1, although the stratum radiatum is no longer present. The stratum oriens is also not present. adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 468). @@ -159642,24 +159644,24 @@ subiculum https://upload.wikimedia.org/wikipedia/commons/9/99/Hippocampus.gif - + - + - + NIFSTD - + Wikipedia @@ -160043,16 +160045,16 @@ - - + + - - + + @@ -160115,44 +160117,44 @@ adenohypophysis http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray1181.png - + - + - + - + - + ZFA - + ZFA - + PMID:19084529 - + NCBIBook:NBK53175 ZFA @@ -160310,7 +160312,7 @@ - + Elevation on the ventral surface of the brain located at the zone of attachment between the hypothalamic floor and the hypophysis (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed., 2005, pg. 446). Region of the neurohypophysis.[AAO] It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG] @@ -160353,14 +160355,14 @@ median eminence of neurohypophysis http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG - + - + ISBN:0471888893 @@ -160459,16 +160461,16 @@ - - + + - - + + The posterior part of the pituitary gland that secretes hormones involved in blood pressure regulation such as oxytocin and antidiuretic hormon. request magnocellular cell from CL. Request oxytocin secretion from GO. Notes: 'The hypophysis or pituitary gland is derived, in part from an ectodermal outpocketing of the stomodeum (Rathke's Pouch) and in part from the floor of the diencephalon' @@ -160528,19 +160530,19 @@ neurohypophysis http://upload.wikimedia.org/wikipedia/commons/b/b9/Pituitary_gland_representation.PNG - + - + - + - + @@ -160553,25 +160555,25 @@ - + ZFA - + PMID:19084529 - + Wikipedia - + Wikipedia @@ -160743,7 +160745,7 @@ - + @@ -160803,7 +160805,7 @@ integument - + @@ -160816,7 +160818,7 @@ - + FMA @@ -161158,7 +161160,7 @@ - + Vasculature that is part of the eye region. not part of the eye in ZFA. Note this changed to a blood vessel in ZFA @@ -161181,14 +161183,14 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb - + - + ISBN:0781772214 @@ -161247,7 +161249,7 @@ - + @@ -161287,14 +161289,14 @@ musculoskeletal system - + - + check ctenophore @@ -161344,7 +161346,7 @@ - + @@ -161378,7 +161380,7 @@ manubrium of sternum http://upload.wikimedia.org/wikipedia/commons/2/23/Gray116.png - + @@ -161391,7 +161393,7 @@ - + ISBN:0073040584 @@ -161433,8 +161435,8 @@ - - + + @@ -161486,24 +161488,24 @@ mammillary body http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1180.png - + - + - + ABA - + GO definition @@ -161629,7 +161631,7 @@ - + A cartilaginous extension to the distal part of the sternum. this class may represent a mixed bony-cartilage element, or it may be the superclass of either purely cartilage or purely ossified elements usually ossified in the adult human. By age 15 to 29, the xiphoid usually fuses to the body of the sternum with a fibrous joint. Unlike the synovial articulation of major joints, this is non-movable. Much the way the first seven ribs articulate with the sternum, the cartilage in the celiac plexus joins on the xiphoid process, reinforcing it, and indirectly attaches the costal cartilage to the sternum. @@ -161658,14 +161660,14 @@ xiphoid process http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray117.png - + - + ISBN:0073040584 @@ -161757,7 +161759,7 @@ - + @@ -161779,14 +161781,14 @@ sternebra http://upload.wikimedia.org/wikipedia/commons/1/12/Illu_thoracic_cage.jpg - + - + MA @@ -161809,7 +161811,7 @@ - + Nonsynovial joint in which the articulating bones or cartilages are connected by ligaments. Examples: sagittal suture, inferior tibiofibular syndesmosis, gomphosis.[FMA]. A joint where fibrous tissue such as ligament connects two calcified tissues.[TAO] AEO:0000178 @@ -161829,7 +161831,7 @@ fibrous joint - + @@ -161842,7 +161844,7 @@ - + AEO @@ -162530,7 +162532,7 @@ - + @@ -162558,7 +162560,7 @@ Gene notes: Gsc and Prx1 are essential for tympanic ring development tympanic ring - + @@ -162571,7 +162573,7 @@ - + MA @@ -162629,7 +162631,7 @@ - + Group of neurons situated on the ventral surface of the fornix at the level of the foramen of Monro in the third ventricle (adapted from Wikipedia via NIF). @@ -162657,7 +162659,7 @@ subfornical organ http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png - + @@ -162670,7 +162672,7 @@ - + MA-modified @@ -162748,7 +162750,7 @@ - + @@ -162778,14 +162780,14 @@ https://github.com/obophenotype/uberon/issues/1795 http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray197.png - + - + MA ZFA @@ -162901,7 +162903,7 @@ - + From the posterior wall of the saccule a canal, the ductus endolymphaticus, is given off; this duct is joined by the ductus utriculosaccularis, and then passes along the aquaeductus vestibuli and ends in a blind pouch, the endolymphatic sac, on the posterior surface of the petrous portion of the temporal bone, where it is in contact with the dura mater. Studies suggest that the endolymphatic duct and endolymphatic sac perform both absorptive and secretory, as well as phagocytic and immunodefensive,functions . [WP,unvetted]. EHDAA2 structure is embryonic The blind extremity of the endolymphatic duct. [TFD][VHOG] @@ -162925,7 +162927,7 @@ endolymphatic sac - + @@ -162938,7 +162940,7 @@ - + EHDAA2 @@ -163079,7 +163081,7 @@ - + The costal margin, sometimes referred to as the costal arch, is the medial margin formed by the false ribs, which in humans is from the eighth rib to the tenth rib. we treat margin and arch in FMA as equivalent here, as a temporary measure. This may be split in future. We follow MA in making this a part of the rib. EMAPA:37491 @@ -163099,7 +163101,7 @@ costal arch http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray115.png - + @@ -163112,7 +163114,7 @@ - + MA @@ -163251,15 +163253,15 @@ - + - - + + @@ -163305,34 +163307,34 @@ http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg - + - + - + - + MA - + Wikipedia:Scala_media - + https://github.com/obophenotype/uberon/issues/387 @@ -163418,7 +163420,7 @@ - + An intersegmental rod-shaped bone that forms in the peritoneal membrane and attach to the vertebral parapophyses. Endochondral bone that is intersegmental and rod-shaped, forming in the peritoneal membrane and attached to the vertebral parapophyses. Ribs protect and support internal organs.[TAO] @@ -163454,14 +163456,14 @@ rib - + - + definitional @@ -163518,16 +163520,16 @@ - - + + - - + + @@ -163557,45 +163559,45 @@ interparietal bone - + - + - + - + - + vault series ISBN:0073040584 - + PMID:11523816 - + MP:0000077 - + definitional @@ -163676,7 +163678,7 @@ - + @@ -163699,7 +163701,7 @@ head of rib http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray122.png - + @@ -163712,7 +163714,7 @@ - + PMID:15906248 @@ -163748,7 +163750,7 @@ - + EMAPA:36014 FMA:7577 MA:0001416 @@ -163763,14 +163765,14 @@ UBERON:0002231 body of rib - + - + PMID:15906248 @@ -163862,7 +163864,7 @@ - + The overlaying membrane of the cochlear duct, an extracellular matrix of the inner ear that contacts the stereocilia bundles of specialized sensory hair cells; sound induces movement of these hair cells relative to the tectorial membrane, deflects the stereocilia, and leads to fluctuations in hair cell membrane potential, transducing sound into electrical signals[MP,modified]. The tectorial membrane (TM) is one of two acellular gels in the cochlea of the inner ear, the other being the basilar membrane (BM). The TM is located above the sulcus spiralis internus and the spiral organ of Corti and extends along the longitudinal length of the cochlea parallel to the BM. Radially the TM is divided into three zones, the limbal, middle and marginal zones. Of these the limbal zone is the thinnest (transversally) and overlies the auditory teeth of Huschke with its inside edge attached to the spiral limbus. The marginal zone is the thickest (transversally) and is divided from the middle zone by Hensen's Stripe. It overlies the sensory inner hair cells and electrically-motile outer hair cells of the organ of Corti and during acoustic stimulation stimulates the inner hair cells through fluid coupling, and the outer hair cells via direct connection to their tallest stereocilia[Wikipedia:Tectorial_membrane_(cochlea)]. in some squamate lineages, the tectorial membrane may not cover the whole cochlear duct/papilla. In some lineages, the tectorial membrane is divided into units called sallets[ISBN:9780387714691] @@ -163885,7 +163887,7 @@ tectorial membrane of cochlea - + @@ -163898,7 +163900,7 @@ - + limbal zone @@ -164026,13 +164028,13 @@ - + - + The tubercle of a rib is an eminence on the posterior surface, at the junction of the neck and body of the rib, and nearer the lower than the upper border. It consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrae to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs[WP]. EMAPA:37736 @@ -164050,14 +164052,14 @@ tubercle of rib - + - + FMA @@ -164348,15 +164350,15 @@ - + - - + + Part of the central nervous system located in the vertebral canal continuous with and caudal to the brain; demarcated from brain by plane of foramen magnum. It is composed of an inner core of gray matter in which nerve cells predominate, and an outer layer of white matter in which myelinated nerve fibers predominate, and surrounds the central canal. (CUMBO). TODO - add superclass to unify with VNC? @@ -164415,34 +164417,34 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb - + - + - + - + ZFA - + definitional - + definitional @@ -164654,7 +164656,7 @@ - + @@ -164685,14 +164687,14 @@ nucleus pulposus http://upload.wikimedia.org/wikipedia/commons/d/d9/Cervical_vertebra_english.png - + - + mah ISBN:0073040584 Wikipedia @@ -164799,8 +164801,8 @@ - - + + One of the bones of the upper jaw situated between and in front of the maxillae[VHOG]. requires checking embryonic vs adult; isa fetal organ part in FMA; adult bone of upper jaw in AAO and ZFA; split. Note that we have loops if we add develops_from UBERON:0005620 primary palate @@ -164838,24 +164840,24 @@ premaxilla http://upload.wikimedia.org/wikipedia/commons/4/4a/Gray160.png - + - + - + ISBN:0073040584 - + Bgee:AN @@ -165181,7 +165183,7 @@ - + @@ -165216,14 +165218,14 @@ uterine horn http://upload.wikimedia.org/wikipedia/commons/2/27/Illu_female_pelvis.jpg - + - + MA @@ -165252,7 +165254,7 @@ - + The passage between the venous and arterial mesocardia -i.e., between the aorta and pulmonary artery in front and the superior vena cava behind. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside.[WP,unvetted]. transverse sinus EHDAA2:0002077 @@ -165269,14 +165271,14 @@ transverse pericardial sinus http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png - + - + MA @@ -165406,11 +165408,11 @@ - - - - - + + + + + The iliocostalis is the muscle immediately lateral to the longissimus that is the nearest to the furrow that separates the epaxial muscles from the hypaxial. It lies very deep to the fleshy portion of the serratus ventralis (serratus anterior). [WP,unvetted]. EMAPA:37603 FMA:77177 @@ -165429,23 +165431,23 @@ iliocostalis muscle http://upload.wikimedia.org/wikipedia/commons/8/89/Iliostalis.png - + - + - + - + - + @@ -165458,33 +165460,33 @@ - + Wikipedia - + dbpedia - + Sacrum/Illiac Crest/Spinous Processes of lower lumbar/thoracic vertebrae dbpedia - + Sacrum/Illiac Crest/Spinous Processes of lower lumbar/thoracic vertebrae dbpedia - + Ribs dbpedia @@ -165597,7 +165599,7 @@ - + An embryological anatomical structure that forms an open connection between the initial area of development of the thyroid gland and its final position; it is located exactly midline, between the anterior 2/3rds and posterior 1/3rd of the tongue; this duct normally atrophies and closes off as the foramen cecum before birth. An embryonic duct extending between the thyroid primordium and the posterior tongue. [TFD][VHOG] A duct, called the thyroglossal duct in mammals, is considered to be characteristic of thyroid development. The thyroglossal duct, degenerating in many species during late development, marks the way the thyroid primordium relocates during embryonic development from the pharynx to its position deep in the cervical mesenchyme. We cannot exclude that the duct of the endostyle and the thyroglossal duct may have evolved independently, but as they both represent a more or less persistent connection of the organ to the pharynx, it is likely that they are homologous structures.[well established][VHOG] @@ -165619,7 +165621,7 @@ thyroglossal duct https://upload.wikimedia.org/wikipedia/commons/f/fd/Illu08_thyroid.jpg - + @@ -165632,7 +165634,7 @@ - + MA VHOG @@ -165713,9 +165715,9 @@ - - - + + + An organ thought to supplement the olfactory system in receiving pheromonic communication. The sensory part of the organ is in two long, thin sacs, situated on either side of the nasal septum at its base. An organ thought to supplement the olfactory system in receiving pheromonic communication. The sensory part of the organ is in two long, thin sacs, situated on either side of the nasal septum at its base. [TFD][VHOG] (...) the vomeronasal organ is known only in some tetrapods. It is absent in most turtles, crocodiles, birds, some bats, and aquatic mammals. In amphibians, it is in a recessed area off the main nasal cavity. (...) In mammals possesing this organ, it is an isolated area of olfactory membrane within the nasal cavity that is usually connected to the mouth via the nasopalatine duct (reference 1); The opinions concerning the presence and functioning of the vomeronasal organ in humans are controversial. The vomeronasal cavities appear early in human foetuses. (...) Historical examination of the nasal septum revealed the presence of vomeronasal cavities in approximately 70% of adults. In contrast to the situation in other mammals, the organ is not supported by a rigid tube of bone or cartilage (reference 2); (...) the best evidence for the homology of the human VNO to that of other primates (and of mammals in general) is ontogenetic in nature, based on a common embryonic origin from a thickening (vomeronasal primordium) on the medial aspect of each olfactory pit (reference 3); (...) suggesting that lungfish possess a region homologous to the accessory olfactory bulb of tetrapods. Based on these results, it seems appropriate to refer to the recess epithelium as a primordium of the vomeronasal organ (reference 4). [debated][VHOG] @@ -165749,34 +165751,34 @@ vomeronasal organ http://upload.wikimedia.org/wikipedia/commons/8/84/Gray51.png - + - + - + - + Wikipedia - + Wikipedia - + EHDAA2-abduced @@ -165850,8 +165852,8 @@ - - + + @@ -165904,24 +165906,24 @@ dorsal horn of spinal cord http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg - + - + - + FMA-abduced-lr - + GO @@ -166064,7 +166066,7 @@ - + @@ -166115,14 +166117,14 @@ ventral horn of spinal cord - + - + FMA-abduced-lr @@ -166254,7 +166256,7 @@ - + The white substance of the spinal cord lying on either side between the posterior median sulcus and the dorsal root. ZFA class is undefined. We currently do not place this as part of the DCML pathway as this would lead to taxon constraint violations. FMA:77461 @@ -166278,14 +166280,14 @@ dorsal funiculus of spinal cord http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg - + - + FMA-abduced-lr @@ -166581,7 +166583,7 @@ - + @@ -166624,7 +166626,7 @@ dorsal root of spinal cord https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg - + @@ -166637,7 +166639,7 @@ - + Wikipedia @@ -166810,7 +166812,7 @@ - + @@ -166847,14 +166849,14 @@ lentiform nucleus http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray741.png - + - + MA @@ -166914,8 +166916,8 @@ - - + + @@ -166984,24 +166986,24 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb - + - + - + ZFA - + ISBN:0471888893 @@ -167420,7 +167422,7 @@ - + The laterodorsal tegmental nucleus (or lateroposterior tegmental nucleus) is a nucleus situated in the brainstem, spanning the midbrain tegmentum and the pontine tegmentum. [WP,unvetted]. @@ -167446,14 +167448,14 @@ laterodorsal tegmental nucleus - + - + MA @@ -167627,7 +167629,7 @@ - + The pupillary membrane in mammals exists in the fetus as a source of blood supply for the lens. It normally atrophies from the time of birth to the age of four to eight weeks. FMA:77663 MA:0001293 @@ -167636,14 +167638,14 @@ UBERON:0002269 pupillary membrane - + - + MA-modified @@ -167661,10 +167663,10 @@ - - - - + + + + @@ -167677,7 +167679,7 @@ - + @@ -167711,23 +167713,23 @@ hyaloid artery http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg - + - + - + - + - + @@ -167740,31 +167742,31 @@ - + Wikipedia - + ZFA - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -168072,7 +168074,7 @@ - + The osseous spiral lamina consists of two plates of bone, and between these are the canals for the transmission of the filaments of the acoustic nerve. On the upper plate of that part of the lamina which is outside the vestibular membrane, the periosteum is thickened to form the limbus spiralis (or limbus laminæ spiralis), this ends externally in a concavity, the sulcus spiralis internus, which represents, on section, the form of the letter C. [WP,unvetted]. EMAPA:35496 @@ -168092,14 +168094,14 @@ lamina of spiral limbus http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray930.png - + - + MA @@ -168133,7 +168135,7 @@ - + A concavity in the floor of the cochlear duct, formed by either the overhanging vestibular lip (inner spiral sulcus) or the spiral prominence and the spiral organ (outer spiral sulcus). EMAPA:35800 FMA:77744 @@ -168143,14 +168145,14 @@ UBERON:0002277 spiral sulcus - + - + MA @@ -168166,7 +168168,7 @@ - + @@ -168193,14 +168195,14 @@ perilymphatic space - + - + ZFA @@ -168287,7 +168289,7 @@ - + @@ -168340,14 +168342,14 @@ otolith http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg - + - + MP Wikipedia @@ -168523,7 +168525,7 @@ - + The upper portion of the spiral ligament contains numerous capillary loops and small blood vessels, and is termed the stria vascularis. It produces endolymph for the scala media, one of the three fluid-filled compartments of the cochlea. [WP,unvetted]. represented as a wall in FMA. MESH def implies part of spiral ligament but better represented as adjacency / overlaps BIRNLEX:2525 @@ -168552,14 +168554,14 @@ stria vascularis of cochlear duct http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png - + - + FMA MA @@ -168757,7 +168759,7 @@ - + A brain ventricle that is part of a telencephalon. In mammals and species with an evaginated telencephalon, this is one of a pair of lateral structures, one in each hemisphere. The lateral ventricles are part of the ventricular system of the brain. Classified as part of the telencephalon, they are the largest of the ventricles. The lateral ventricles connect to the central third ventricle through the interventricular foramina of Monro[WP]. @@ -168810,14 +168812,14 @@ telencephalic ventricle http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png - + - + material to immaterial EHDAA2 @@ -168914,7 +168916,7 @@ - + @@ -168964,14 +168966,14 @@ third ventricle http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png - + - + EHDAA2 @@ -169218,7 +169220,7 @@ - + Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone). The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG] @@ -169280,14 +169282,14 @@ midbrain cerebral aqueduct http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png - + - + EHDAA2 @@ -169507,8 +169509,8 @@ - - + + @@ -169570,11 +169572,11 @@ central canal of spinal cord http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg - + - + @@ -169587,13 +169589,13 @@ - + MA - + FMA @@ -169957,7 +169959,7 @@ - + @@ -169980,7 +169982,7 @@ scala media http://upload.wikimedia.org/wikipedia/commons/b/bc/Gray928.png - + @@ -169993,7 +169995,7 @@ - + FMA @@ -170018,7 +170020,7 @@ - + @@ -170048,14 +170050,14 @@ dorsal mesentery http://upload.wikimedia.org/wikipedia/commons/8/85/Gray985.png - + - + EHDAA2 @@ -170350,7 +170352,7 @@ - + @@ -170363,7 +170365,7 @@ - + @@ -170400,24 +170402,24 @@ alveolus of lung https://upload.wikimedia.org/wikipedia/commons/4/46/Alveolus_diagram.svg - + - + - + MA - + PMID:12625309 PMID:12869615 @@ -170630,7 +170632,7 @@ - + @@ -170649,7 +170651,7 @@ - + An anatomical structure which consists of juxtaglomerular cells, extraglomerular mesangial cells and the macula densa. The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]. a microscopic structure in the kidney, which regulates the function of each nephron. The juxtaglomerular apparatus is named for its proximity to the glomerulus: it is found between the vascular pole of the renal corpuscle and the returning distal convoluted tubule of the same nephron. This location is critical to its function in regulating renal blood flow and glomerular filtration rate. The three cellular components of the apparatus are the macula densa, extraglomerular mesangial cells, and juxtaglomerular cells (also known as granular cells)[WP]. BTO:0005157 @@ -170671,24 +170673,24 @@ juxtaglomerular apparatus - + - + - + MA - + GO @@ -171096,8 +171098,8 @@ - - + + @@ -171139,25 +171141,25 @@ hippocampus fimbria http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray749.png - + - + - + Need to determine whether the fimbria is part of the fornix. Sometimes the language suggests it isn't always thought of that way, but I see no useful reason why it should be separate; it all forms one continuous white matter tract. Neuronames and others include this as part of the hippocampal formation (MM) NIFSTD - + MA NIFSTD @@ -171394,7 +171396,7 @@ - + Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM). The tectum - a multisensory, topologically mapped structure in the roof of the midbrain presents a remarkable degree of conservation in all vertebrate radiations; although it varies in the extent of its development in different vertebrate classes, there is considerable evidence now to deem its layered structure, its cell types, and its hodological pattern as homologous in all vertebrates.[well established][VHOG] In adult humans it is present only in the mesencephalon as the inferior and the superior colliculi @@ -171433,14 +171435,14 @@ midbrain tectum http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray685.png - + - + Wikipedia @@ -171764,7 +171766,7 @@ - + Regional part of cerebellum consisting of the myelinated axons lying deep to the granule cell layer, excluding the deep cerebellar nuclei and the cerebellar peduncles. CNS white matter that is part of the cerebellum.[TAO] in NIF this is a composite structure; in MA and FMA it is explicitly part of cerebellum. This leads to consistency problems with strict parcellation schemes like ABA, see cerebellar peduncles. In NIF this is a composite structure, this is followed partially here in weakening the relationship to overlaps @@ -171794,14 +171796,14 @@ white matter of cerebellum - + - + FMA-weakened MA-weakened @@ -172070,7 +172072,7 @@ - + @@ -172093,14 +172095,14 @@ glomerular mesangium - + - + GO @@ -172118,8 +172120,8 @@ - - + + @@ -172136,24 +172138,24 @@ EDITOR_NOTE check MA part_ofs - should be spatially disjoint from renal glomerulus? extraglomerular mesangium - + - + - + MA - + MA @@ -172216,7 +172218,7 @@ - + @@ -172224,7 +172226,6 @@ The cavity within the body of all animals higher than the coelenterates and certain primitive worms, formed by the splitting of the embryonic mesoderm into two layers. In mammals it forms the peritoneal, pleural, and pericardial cavities. - Anatomical space, part of the trunk that contains the pericardial and pleuroperitoneal cavities[ZFA]. The cavity within the body of all animals higher than the coelenterates and certain primitive worms, formed by the splitting of the embryonic mesoderm into two layers. In mammals it forms the peritoneal, pleural, and pericardial cavities[BTO]. In mammals it forms the peritoneal, pleural, and pericardial cavities UBERON:0000169 @@ -172239,7 +172240,6 @@ SCTID:361348008 TAO:0001438 UMLS:C0333343 - ZFA:0001438 galen:BodyCavity coelomic cavity coelomic cavity lumen @@ -172257,14 +172257,14 @@ EDITOR_NOTE check the FMA placement here; ncit placement of body cavity here probably not correct coelemic cavity lumen - + - + definitional @@ -172273,15 +172273,6 @@ The cavity within the body of all animals higher than the coelenterates and certain primitive worms, formed by the splitting of the embryonic mesoderm into two layers. In mammals it forms the peritoneal, pleural, and pericardial cavities. BTO:0001707 - - - - Anatomical space, part of the trunk that contains the pericardial and pleuroperitoneal cavities[ZFA]. - 2012-09-12 - ZFA:0001438 - ZFA - ZFIN:curator - @@ -177501,6 +177492,7 @@ Either of the two small almond-shaped masses of lymph tissue found on either side of the oropharynx. the term 'tonsil' can be ambiguous, sometimes refering specifically to the palatine tonsil, sometimes generically to include the cecal tonsils of avians. This class represents lymphoid tissue that is part of the tonsillar ring, in the mouth/throat region + BTO:0001387 CALOHA:TS-1053 EFO:0001401 @@ -177521,6 +177513,7 @@ Mandel UBERON:0002372 + tonsil @@ -187319,6 +187312,7 @@ The lymphatic system in vertebrates is a network of conduits that carry a clear fluid called lymph. It also includes the lymphoid tissue through which the lymph travels. Lymphoid tissue is found in many organs, particularly the lymph nodes, and in the lymphoid follicles associated with the digestive system such as the tonsils. The system also includes all the structures dedicated to the circulation and production of lymphocytes, which includes the spleen, thymus, bone marrow and the lymphoid tissue associated with the digestive system[WP]. + Part of the circulatory system which consists of a series of vessels which collect blood (exclusive of erythrocytes) which seep through capillary walls and return it to the veins.[AAO] Tetrapods have evolved distinct lymphatic systems, in which lymphatic capillaries help drain most of the tissues of the body.[well established][VHOG] lymphoid @@ -187348,6 +187342,7 @@ lymphatic drainage system systema lymphoideum UBERON:0002465 + lymphoid system @@ -193905,7 +193900,7 @@ - + @@ -242553,7 +242548,6 @@ TAO:0000518 UMLS:C0228398 Wikipedia:Periaqueductal_gray - ZFA:0000518 neuronames:510 anulus of cerebral aqueduct central (periaqueductal) gray @@ -263625,6 +263619,7 @@ A mucosa that is part of a rectum [Automatically generated definition]. + CALOHA:TS-2107 EMAPA:27081 FMA:15033 @@ -263641,6 +263636,7 @@ rectum organ mucosa uberon UBERON:0003346 + mucosa of rectum @@ -301299,6 +301295,7 @@ Initial section of the oviduct through which the ova pass from the ovary to the uterus. Homologous to appendix testis + mammalian oviduct salpinges salpinx CALOHA:TS-0732 @@ -301314,7 +301311,6 @@ UMLS:C0015560 Wikipedia:Fallopian_tube galen:FallopianTube - mammalian oviduct uterine tube (sensu Mammalia) uberon fallopian tubes @@ -301353,6 +301349,12 @@ Homologous to appendix testis Wikipedia:Talk:Fallopian_tube#Homology + + + + mammalian oviduct + https://sourceforge.net/p/geneontology/ontology-requests/8397/ + @@ -301367,9 +301369,9 @@ - - mammalian oviduct - https://sourceforge.net/p/geneontology/ontology-requests/8397/ + + fallopian tubes + @@ -301411,7 +301413,7 @@ - + Paired ducts of the embryo that run down the lateral sides of the urogenital ridge and terminate at the mullerian eminence in the primitive urogenital sinus. In the female, they will develop to form the fallopian tubes, uterus, and the upper portion of the vagina; in the male, they are lost. These ducts are made of tissue of mesodermal origin[WP]. develops either by lengthwise splitting of the archinephric duct (in chondrichthyans and some amphibians) or by a elongated invagination of the coelomic epithelium (other vertebrates) In males, the oviducts regress. The cranial end of the oviduct maintains an opening into the coelom (which primitively may have been the anteriormost coelomic funnels connecting the nephrocoel with the coelom). This opening is the ostium tubae[USM]. Either of the paired embryonic ducts developing into the uterine tubes, uterus, and vagina in the female and becoming largely obliterated in the male. [TFD][VHOG] Transient developmental organ which gives rise to oviducts in female (documented to persist in some male frogs).[AAO] @@ -301441,14 +301443,14 @@ Mullerian duct http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png - + - + Wikipedia @@ -301597,8 +301599,8 @@ - - + + @@ -301633,11 +301635,11 @@ liver primordium - + - + @@ -301656,13 +301658,13 @@ - + EHDAA2 - + ventral foregut endoderm Zaret 1996 @@ -301861,7 +301863,7 @@ - + @@ -301881,14 +301883,14 @@ UBERON:0003898 skeletal muscle tissue of trunk - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -302002,7 +302004,7 @@ - + @@ -302034,14 +302036,14 @@ horizontal septum - + - + ISBN:0073040584 @@ -302084,7 +302086,7 @@ - + @@ -302101,7 +302103,7 @@ - + The part of the retina that contains neurons and photoreceptor cells[GO]. (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] @@ -302133,14 +302135,14 @@ retinal neural layer - + - + Bgee:AN @@ -302213,7 +302215,7 @@ - + @@ -302237,14 +302239,14 @@ bursa of Fabricius - + - + Wikipedia @@ -303142,7 +303144,7 @@ - + @@ -303172,14 +303174,14 @@ pancreas primordium http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png - + - + Wikipedia @@ -303221,16 +303223,16 @@ - - + + - - + + The embryonic pancreas develops from two separate anlagen in the foregut epithelium, one dorsal and two ventral pancreatic buds[PMID]. EFO:0003470 EMAPA:35645 @@ -303251,19 +303253,19 @@ http://upload.wikimedia.org/wikipedia/commons/4/49/Suckale08FBS_fig1_pancreas_development.jpeg http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png - + - + - + - + @@ -303276,26 +303278,26 @@ - + EHDAA2 - + Wikipedia:Pancreas#Embryological_development - + zebrafish Wikipedia:Pancreatic_bud - + EHDAA2-inferred @@ -303337,8 +303339,8 @@ - - + + Pancreatic bud that gives rise to the accessory pancreatic duct. The pancreatic bud that gives rise to the accessory pancreatic duct.[AAO] In chick, Xenopus laevis, and the teleost fish Medaka, the pancreas develops from three buds that emerge from the gut tube, two from its ventral aspect, and one from its dorsal aspect. In mouse, although there are initially three buds that arise from the gut tube at the point of contact between the endoderm and the vasculature, the pancreas develops from only two of these buds, one dorsal and one ventral. (...) In this study, we use a transgenic zebrafish line (...). We provide evidence for the existence of two distinct pancreatic anlagen - a ventral anterior bud and a dorsal posterior bud - that join to form the definitive pancreas (reference 1); The pancreas develops from the fusion of distinct endoderm-derived dorsal and ventral diverticula. In humans, by day 35 of development, the ventral pancreatic bud begins to migrate backwards and comes into contact and eventually fuses with the dorsal pancreatic bud during the sixth week of development (reference 2).[well established][VHOG] @@ -303366,24 +303368,24 @@ dorsal pancreatic bud http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png - + - + - + EHDAA2 - + XAO @@ -303430,8 +303432,8 @@ - - + + Pancreatic bud that gives rise to the major pancreatic duct. In chick, Xenopus laevis, and the teleost fish Medaka, the pancreas develops from three buds that emerge from the gut tube, two from its ventral aspect, and one from its dorsal aspect. In mouse, although there are initially three buds that arise from the gut tube at the point of contact between the endoderm and the vasculature, the pancreas develops from only two of these buds, one dorsal and one ventral. (...) In this study, we use a transgenic zebrafish line (...). We provide evidence for the existence of two distinct pancreatic anlagen - a ventral anterior bud and a dorsal posterior bud - that join to form the definitive pancreas (reference 1); The pancreas develops from the fusion of distinct endoderm-derived dorsal and ventral diverticula. In humans, by day 35 of development, the ventral pancreatic bud begins to migrate backwards and comes into contact and eventually fuses with the dorsal pancreatic bud during the sixth week of development (reference 2).[well established][VHOG] The ventral pancreatic bud becomes the head and uncinate process, and comes from the hepatic diverticulum[WP] @@ -303459,24 +303461,24 @@ ventral pancreatic bud http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png - + - + - + EHDAA2 - + PMID:16417468 WP @@ -303509,7 +303511,7 @@ - + @@ -303536,14 +303538,14 @@ photoreceptor inner segment layer - + - + MA @@ -303582,7 +303584,7 @@ - + @@ -303608,14 +303610,14 @@ photoreceptor outer segment layer - + - + MA @@ -305589,7 +305591,7 @@ - + @@ -305626,14 +305628,14 @@ rete testis http://upload.wikimedia.org/wikipedia/commons/b/b5/Hodenschema.svg - + - + Wikipedia @@ -305670,8 +305672,8 @@ - - + + @@ -305696,24 +305698,24 @@ styloid process of temporal bone http://upload.wikimedia.org/wikipedia/commons/9/96/Gray137.png - + - + - + ISBN:0073040584 - + MP-implied-by-def @@ -305838,7 +305840,7 @@ - + The small parasympathetic ganglion that supplies nerve fibers to the lacrimal, nasal, palatine and pharyngeal glands. BAMS:GptVII @@ -305862,14 +305864,14 @@ pterygopalatine ganglion http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray779.png - + - + definitional @@ -306375,7 +306377,7 @@ - + One of the conchae of the ethmoid bone, which occupy the caudal part of the nasal fossae and form the lateral and superior portions of the turbinate bones in mammals[MP]. The ethmoturbinals are associated with the cribiform plate. They are covered with olfactory epithelium. Primarily, they serve to increase the surface area over which olfactory receptor neurons can come in contact with respiratory air. These olfactory receptor nerves then synapse with the mitral cells of the olfactory lobes through the cribiform plate in the manner described above[Palaeos]. FMA considers nasal concha and nasal concha of ethmoid bone to be synonymous. We disambiguate these here EMAPA:37914 @@ -306390,14 +306392,14 @@ nasal concha of ethmoid bone - + - + ISBN:0073040584 @@ -306439,7 +306441,7 @@ - + @@ -306475,7 +306477,7 @@ upper part of vagina - + @@ -306488,7 +306490,7 @@ - + EMAPA @@ -307745,7 +307747,7 @@ - + @@ -307775,7 +307777,7 @@ interventricular foramen of CNS - + @@ -307788,7 +307790,7 @@ - + MP @@ -308001,8 +308003,8 @@ - - + + @@ -308043,11 +308045,11 @@ hyoid bone greater horn - + - + @@ -308060,13 +308062,13 @@ - + FMA-abduced-lr - + Wikipedia @@ -308214,8 +308216,8 @@ - - + + @@ -308247,11 +308249,11 @@ hyoid bone lesser horn - + - + @@ -308264,13 +308266,13 @@ - + FMA-abduced-lr - + MP-implied-by-def @@ -308864,8 +308866,8 @@ - - + + The embryonic pseudostratified epithelium of the fourth cerebellar ventricle that eventually forms the vermis and ventral neuroepithelium. DHBA:12698 EHDAA2:0004401 @@ -308877,11 +308879,11 @@ cerebellar plate - + - + @@ -308894,13 +308896,13 @@ - + EHDAA2 - + EHDAA2 @@ -309124,7 +309126,7 @@ - + One of the folds of skin which form the inner lips on both sides of the vaginal opening. FMA:20374 MA:0002845 @@ -309144,14 +309146,14 @@ labium minora http://upload.wikimedia.org/wikipedia/commons/b/b7/Vulva_labeled_english.jpg - + - + Wikipedia @@ -309239,7 +309241,7 @@ - + A transitional population of migrating mesenchymal cells that derive from somites and that will become dermal cells. Not to be confused with 'dermatome segment of skin'. @@ -309267,7 +309269,7 @@ dermatome http://upload.wikimedia.org/wikipedia/commons/f/f3/Gray64.png - + @@ -309280,7 +309282,7 @@ - + EHDAA2-abduced @@ -309338,7 +309340,7 @@ - + The mesenchymal cells that give rise to the corneal endothelium, corneal stroma, sclera, iris stroma, ciliary muscle, ciliary stroma, and trabecular meshwork of the eye[MP]. Periocular mesenchyme (PM) is a mesencephalic neural crest derived cell population which as a result of an interaction with the retinal pigment epithelium forms the scleral cartilage of the avian eye Check XAO once it has a definition. @@ -309350,14 +309352,14 @@ periocular mesenchyme - + - + PMID:3709965 @@ -309508,8 +309510,8 @@ - - + + @@ -309529,25 +309531,25 @@ spongiotrophoblast layer - + - + - + MP:0004255 PMID:11433360 - + PMID:19829370 @@ -309939,7 +309941,7 @@ - + The vascular structure encircling the anterior chamber of the eye, through which the aqueous humor is returned to the blood circulation. EMAPA:37456 FMA:51873 @@ -309958,14 +309960,14 @@ canal of Schlemm - + - + FMA/obol @@ -310375,7 +310377,7 @@ - + @@ -310394,14 +310396,14 @@ cortical intermediate zone - + - + Wikipedia @@ -310497,7 +310499,7 @@ - + The nodules of antigen-activated, differentiating B cells, follicular dendritic cells, antigen-presenting T cells and macrophages in the spleen white pulp. EMAPA:37961 @@ -310509,14 +310511,14 @@ spleen secondary B follicle - + - + CL:tm @@ -310551,7 +310553,7 @@ - + The spherical enlargement at the base of each semicircular canal where they connect with the utricle, containing the crista ampullaris which detects movement of the fluid within the canals. TODO check duct vs canal. Also check FMA - has many subtypes of semicircular canal such as 'ampulla of anterior semicircular canal' EMAPA:32831 @@ -310567,14 +310569,14 @@ semicircular canal ampulla http://upload.wikimedia.org/wikipedia/commons/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg - + - + MA @@ -311145,8 +311147,8 @@ - - + + @@ -311168,11 +311170,11 @@ primitive pit - + - + @@ -311185,13 +311187,13 @@ - + EHDAA2 - + EHDAA2 @@ -311298,7 +311300,7 @@ - + @@ -311325,14 +311327,14 @@ biliary ductule - + - + BTO @@ -311436,7 +311438,7 @@ - + The layer of undifferentiated, proliferating cells that line the neural tube lumen that is the immediate transformation of the germinal neuroepithelium. consider merging with 'ventricular zone'; note that the MA class probably does not belong here, as this is an embryonic structure The layer of undifferentiated, proliferating cells that line the neural tube lumen @@ -311454,7 +311456,7 @@ neural tube ventricular layer - + @@ -311467,7 +311469,7 @@ - + NCBIBook:NBK10047 @@ -311528,7 +311530,7 @@ - + @@ -311552,7 +311554,7 @@ neural tube mantle layer - + @@ -311565,7 +311567,7 @@ - + by division NCBIBook:NBK10047 @@ -311603,7 +311605,7 @@ - + @@ -311620,14 +311622,14 @@ neural tube marginal layer - + - + forms from axons @@ -311736,7 +311738,7 @@ - + @@ -311761,14 +311763,14 @@ neural tube basal plate - + - + Shh Swenson @@ -311893,8 +311895,8 @@ - - + + The lateral area of the two branches of a horseshoe-shaped mesenchymal swelling in the future nasal region of the embryo; it separates the olfactory pit from the developing eye and the ala of the nose/snout develops from it. EHDAA2:0000916 @@ -311913,24 +311915,24 @@ lateral nasal prominence http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray48.png - + - + - + EHDAA2 - + Wikipedia @@ -311978,14 +311980,14 @@ - + - + The central area of the two limbs of a horseshoe-shaped mesenchymal swelling that lie medial to the olfactory placode or pit in the future nasal region of the embryo; it joins with the ipsilateral maxillary prominence in the formation of half of the upper jaw, and the nasal tip and philtrum of the upper lip develop from it. Fusion of right and left medial nasal processes forms a primary palate rostrally and the nasal septum caudally. The incisive bone, including upper incisor teeth and the rostral up- per lip, are derived from the primary palate. The nasal septum consists of bone, cartilage, and a patch of soft tissue membrane that separates right & left halves of the nasal cavity. EHDAA2:0001076 @@ -312006,24 +312008,24 @@ medial nasal prominence http://upload.wikimedia.org/wikipedia/commons/8/85/Gray45.png - + - + - + EHDAA2 - + Wikipedia @@ -312071,14 +312073,14 @@ - + - + The forebrain region that coordinates sensory signaling arising from the vomeronasal organ; it is located on the dorsal-posterior portion of the main olfactory bulb, and the axons that leave the accessory olfactory bulb project to targets in the amygdala and hypothalamus. @@ -312104,24 +312106,24 @@ Projection notes: Site of termination of vomeronasal nerve; projects to: other parts of pallial amygdala, medial amygdala, subpallial nucleus (Butler and Hodos) accessory olfactory bulb - + - + - + cjm - + ISBN:0471888893 @@ -312249,7 +312251,7 @@ - + The nucleus composed of the globose and emoliform nuclei of the cerebellum; in some mammalian species the globose nucleus is not distinguishable. The interposed nucleus is a deep nucleus of the cerebellum and is composed of the globose nuclei and the emboliform nuclei. It is located in in the roof (dorsal aspect) of the fourth ventricle, lateral to the fastigial nucleus. It receives its afferent supply from the anterior lobe of the cerebellum and sends output via the superior cerebellar peduncle to the red nucleus. @@ -312274,14 +312276,14 @@ cerebellum interpositus nucleus - + - + ISBN:0471888893 @@ -312448,7 +312450,7 @@ - + @@ -312479,7 +312481,7 @@ cerebellum vermis lobule II - + @@ -312492,7 +312494,7 @@ - + ABA @@ -312532,7 +312534,7 @@ - + @@ -312565,7 +312567,7 @@ cerebellum vermis lobule III - + @@ -312578,7 +312580,7 @@ - + ABA @@ -312612,7 +312614,7 @@ - + @@ -312642,7 +312644,7 @@ cerebellum vermis lobule IV - + @@ -312655,7 +312657,7 @@ - + ABA @@ -312683,7 +312685,7 @@ - + The uvula (uvular lobe) forms a considerable portion of the inferior vermis; it is separated on either side from the tonsil by the sulcus valleculC&, at the bottom of which it is connected to the tonsil by a ridge of gray matter, indented on its surface by shallow furrows, and hence called the furrowed band. BAMS:UVU BAMS:Uvu @@ -312713,7 +312715,7 @@ The uvula is the second largest lobule, following the culmen. It pertains to the paleocerebellum and is separated from the nodule by the posterolateral fissure. cerebellum vermis lobule IX - + @@ -312726,7 +312728,7 @@ - + NIFSTD @@ -312790,7 +312792,7 @@ - + @@ -312825,7 +312827,7 @@ cerebellum vermis lobule V - + @@ -312838,7 +312840,7 @@ - + ABA @@ -312884,7 +312886,7 @@ - + @@ -312919,7 +312921,7 @@ cerebellum vermis lobule VI - + @@ -312932,7 +312934,7 @@ - + MP @@ -313165,7 +313167,7 @@ - + @@ -313198,7 +313200,7 @@ cerebellum vermis lobule X - + @@ -313211,7 +313213,7 @@ - + NIFSTD @@ -313271,8 +313273,8 @@ - - + + @@ -313302,24 +313304,24 @@ genital labium - + - + - + MA - + FMA-abduced-lr @@ -313360,7 +313362,7 @@ - + One of the folds of skin which form the outer lips on both sides of the vaginal opening. FMA:20367 MA:0002844 @@ -313380,14 +313382,14 @@ labium majora http://upload.wikimedia.org/wikipedia/commons/2/26/Gray1229.png - + - + posterior labial commissure Wikipedia @@ -314106,7 +314108,7 @@ - + One of the two jaw ridges either on the roof of the mouth between the upper teeth and the hard palate or on the bottom of the mouth behind the lower teeth[WP]. The alveolar ridges contain the sockets (alveoli) of the teeth[HP]. in BTO, this is part of an embryo BTO:0001383 @@ -314129,14 +314131,14 @@ alveolar ridge - + - + PMID:19767574 Wikipedia @@ -314277,7 +314279,7 @@ - + Horizontal piece of cartilage located outside the ear canal that divides the upper and lower parts of the ear. FMA:61024 NCIT:C32410 @@ -314291,14 +314293,14 @@ crus of ear - + - + Wikipedia-uncited @@ -314334,9 +314336,9 @@ - - - + + + Part of the cranium, the clivus is a shallow depression behind the dorsum sellC& that slopes obliquely backward. It forms a gradual sloping process at the anterior most portion of the basilar occipital bone at its junction with the sphenoid bone. On axial planes, it sits just posterior to the sphenoid sinuses. Just lateral to the clivus bilaterally is the foramen lacerum which contains the internal carotid artery, proximal to its anastamosis with the Circle of Willis. Posterior to the clivus is the basilar artery. The clivus supports the upper part of the pons. check relationships. FMA:75747 @@ -314356,15 +314358,15 @@ clivus of occipital bone http://upload.wikimedia.org/wikipedia/commons/c/c5/Clivus.png - + - + - + @@ -314377,19 +314379,19 @@ - + FMA - + HP:0010558 - + Wikipedia @@ -314761,7 +314763,7 @@ - + @@ -314787,7 +314789,7 @@ tympanic cavity http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png - + @@ -314800,7 +314802,7 @@ - + EHDAA2 @@ -315099,8 +315101,8 @@ - - + + An internal pocketing of pharyngeal endoderm that contacts a region of ectoderm (a pharyngeal cleft) and interdigitates in the anterior and posterior directions with the pharyngeal arches. Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits. Crump et al, 2004.[TAO] A conserved feature of all vertebrate embryos is the presence of a series of bulges on the lateral surface of the head, the pharyngeal arches; it is within these structures that the nerves, muscles and skeletal components of the pharyngeal apparatus are laid down. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches.[well established][VHOG] @@ -315133,24 +315135,24 @@ The pouches are polarized structures. For example, whereas the rostral half of each pouch expresses Bmp-7, the caudal half expresses FGF-8 and the dorsal aspect of each pouch is marked via its expression of Pax-1. each pouch has an individual sense of identity. Shh expression is a prominent early feature of the caudal endoderm of the second arch, and individual pouches mark the anterior limits of expression of Hox genes within the pharyngeal endoderm; Hox-a2 has a rostral boundary at the second pouch, Hox-a3 at the third pouch and Hox-a4 at the most caudal pouch[PMID:16313389] pharyngeal pouch - + - + - + http://tolweb.org/Chordata/2499 - + EHDAA2 ZFA @@ -315778,7 +315780,7 @@ - + A myocardium trabecular layer that is part of a cardiac ventricle. TODO - check FMA FMA:83511 @@ -315792,14 +315794,14 @@ trabecular layer of ventricle - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -315844,7 +315846,7 @@ - + The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle. The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle.[TAO] EMAPA:37833 @@ -315860,14 +315862,14 @@ compact layer of ventricle - + - + ZFA @@ -315917,9 +315919,9 @@ - - - + + + @@ -315952,34 +315954,34 @@ optic vesicle http://upload.wikimedia.org/wikipedia/commons/e/e0/Gray863.png - + - + - + - + ZFA - + GO-def - + ZFA @@ -316148,7 +316150,7 @@ - + The sensory trigeminal nerve nuclei are the largest of the cranial nerve nuclei, and extend through the whole of the midbrain, pons and medulla. The nucleus is divided into three parts, from rostral to caudal (top to bottom in humans): * The mesencephalic nucleus * The chief sensory nucleus (or pontine nucleus or main sensory nucleus or primary nucleus) * The spinal trigeminal nucleus[WP]. TODO - check ZFA link. note this is part of medulla in ZFA, but we do not include this link here as it leads to inconsistencies EMAPA:35884 @@ -316169,14 +316171,14 @@ trigeminal sensory nucleus http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png - + - + MA @@ -316249,8 +316251,8 @@ - - + + In mammals, the proximal tubule is a nephron tubule that connects Bowman's capsule to the loop of Henle. It has a brush border epithelial morphology[GO]. TODO - ensure definition works across species. @@ -316267,24 +316269,24 @@ proximal tubule - + - + - + GO - + GO @@ -316344,7 +316346,7 @@ - + The intermediate tubule is a nephron tubule that lies between the proximal and distal tubules. TODO - check for applicability across species FMA:17718 @@ -316354,14 +316356,14 @@ UBERON:0004136 intermediate tubule - + - + FMA @@ -316467,8 +316469,8 @@ - - + + A specific region of the lateral mesoderm that will form the primary beating heart tube. In mammals the primary heart field gives rise to the left ventricle. this term denotes the primary heart field; GO:0003128 denotes the superclass of primary and secondary: specific region of the lateral mesoderm into the area which will form the primary beating heart tube[GO:0003138] XAO:0004185 @@ -316481,24 +316483,24 @@ UBERON:0004140 primary heart field - + - + - + GO:0003128 - + https://orcid.org/0000-0003-3308-6245 @@ -316557,7 +316559,7 @@ - + An epithelial tube that will give rise to the mature heart. the paired, longitudinal, endothelial-lined channels formed from the cardiogenic mesoderm in embryonic development; angiogenic cell clusters (aka angioblastic cords) located in a horse-shoe shape configuration in the cardiogenic plate coalesce to form the right and left endocardial heart tubes which then fuse in cephalo-caudal direction to form a single primitive heart tube. AAO:0010411 @@ -316577,14 +316579,14 @@ heart tube - + - + ZFA-modified @@ -316749,8 +316751,8 @@ - - + + The His-Purkinje system receives signals from the AV node and is composed of the fibers that regulate cardiac muscle contraction in the ventricles. the intraventricular conduction system from the bundle of His to the distal Purkinje fibers, which carries the impulse to the ventricles. HPS @@ -316761,11 +316763,11 @@ UBERON:0004146 His-Purkinje system - + - + @@ -316778,13 +316780,13 @@ - + GO - + PMID:12626327 PMID:21234997 github:michaelerice @@ -317022,7 +317024,7 @@ - + The bulbus arteriosus is an elastic heart chamber[GO]. Multi-tissue structure that consists of three layers and through which the blood exits the heart. The bulbus arteriosus is a pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches[ZFA]. A pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches. The bulbus arteriosus has three distinct layers. Hu et al. 2000.[TAO] replaces conus arteriosis in cartilaginous fish @@ -317035,14 +317037,14 @@ bulbus arteriosus - + - + definitional @@ -317075,7 +317077,7 @@ - + Endocardial cushions project into the atrial canal, and, meeting in the middle line, unite to form the septum intermedium which divides the canal into two channels, the future right and left atrioventricular orifices[Gray's via WP]. SCTID:361468003 Wikipedia:Septum_intermedium @@ -317085,14 +317087,14 @@ ventricular septum intermedium http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray467.png - + - + Wikipedia @@ -317303,8 +317305,8 @@ - - + + An embryonic group of progenitor cells that forms from an outpouching of the septum transversum near the venous pole of the heart and gives rise to the epicardium. propepicardial Proepicardial clusters in Zebrafish form on the pericardial wall, adjacent to the atrioventricular (AV) junction and near the venous pole[ZFA] @@ -317316,24 +317318,24 @@ UBERON:0004160 proepicardium - + - + - + todo check other taxa - + ZFA @@ -317502,14 +317504,14 @@ - + - + @@ -317527,24 +317529,24 @@ UBERON:0004164 branchiomeric muscle - + - + - + ISBN:0073040584 - + PMID:21610022 @@ -317589,14 +317591,14 @@ - + Missing definition for term UBERON:0004166. Please replace it using linked reference. check ZFA structures superior reticular formation medial column & tegmentum uberon UBERON:0004166 superior reticular formation - + @@ -317609,7 +317611,7 @@ - + GO @@ -317626,7 +317628,7 @@ - + @@ -317658,14 +317660,14 @@ orbitofrontal cortex - + - + FMA MP @@ -317865,7 +317867,7 @@ - + The trigeminothalamic tract is one of the major routes of nociceptive and temperature signaling from the face. BAMS:tth BIRNLEX:4097 @@ -317879,14 +317881,14 @@ UBERON:0004171 trigeminothalamic tract - + - + GO @@ -318286,8 +318288,8 @@ - - + + A saclike structure of the prostate gland, comprised of at least three cell layers: an innermost layer of secretory columnar luminal epithelium, a middle layer of squamous basal epithelium that also contains neuroendocrine cells, transit amplifying cells, and stem cells, and an outer layer of smooth muscle intermixed with other stromal cells. the muscle layer is implicitly treated as outside the acinus @@ -318300,11 +318302,11 @@ prostate glandular acinus - + - + @@ -318317,13 +318319,13 @@ - + GO - + PMID:18977204 @@ -318897,7 +318899,7 @@ - + @@ -318942,14 +318944,14 @@ Harderian gland - + - + PMID:7559104 @@ -319385,8 +319387,8 @@ - - + + The S1 portion is the initial portion of the proximal convoluted tubule and is responsible for avid reabsorption of water and solutes[GO]. UBERON:0006432 @@ -319402,24 +319404,24 @@ proximal convoluted tubule segment 1 - + - + - + GO - + GO @@ -319455,8 +319457,8 @@ - - + + The S2 portion of the tubule is involved in reabsorption of water and sodium chloride[GO]. UBERON:0006433 @@ -319472,24 +319474,24 @@ proximal convoluted tubule segment 2 - + - + - + GO - + GO @@ -319523,8 +319525,8 @@ - - + + The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron. EMAPA:27681 ZFA:0005588 @@ -319534,24 +319536,24 @@ comma-shaped body - + - + - + cjm - + ZFA @@ -319573,8 +319575,8 @@ - - + + The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron. TODO EMAPA:27756 @@ -319587,24 +319589,24 @@ S-shaped body - + - + - + cjm - + GO @@ -320144,21 +320146,21 @@ - + The prebend segment is a part of the descending thin limb that lies before the bend and exhibits robust sodium chloride reabsorption. uberon prebend segment UBERON:0004207 prebend segment of loop of Henle - + - + GO @@ -320364,7 +320366,7 @@ - + @@ -320403,14 +320405,14 @@ glomerular capillary - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -320847,8 +320849,8 @@ - - + + A portion of smooth muscle tissue that is part of a large intestine [Automatically generated definition]. MA class may specifically mean muscle layer, but we treat as the sum of smooth muscle in both muscle layer and muscularis mucosa EMAPA:35469 @@ -320864,24 +320866,24 @@ UBERON:0004220 large intestine smooth muscle - + - + - + MA - + consider merging @@ -320962,7 +320964,7 @@ - + @@ -320999,14 +321001,14 @@ intestine smooth muscle - + - + consider merging @@ -323409,7 +323411,7 @@ - + A portion of smooth muscle tissue that is part of a small intestine [Automatically generated definition]. MA class may specifically mean muscle layer, but we treat as the sum of smooth muscle in both muscle layer and muscularis mucosa EMAPA:35783 @@ -323434,14 +323436,14 @@ small intestine smooth muscle - + - + consider merging @@ -324202,7 +324204,7 @@ - + A portion of smooth muscle tissue that is part of a prostate gland [Automatically generated definition]. BTO:0003159 @@ -324231,14 +324233,14 @@ prostate gland smooth muscle - + - + FMA @@ -325442,7 +325444,7 @@ - + Any muscle organ that is part of a hindlimb stylopod (upper leg)[Automatically generated definition]. UBERON:0000374 BTO:0001367 @@ -325458,14 +325460,14 @@ hindlimb stylopod muscle - + - + prolog @@ -325592,7 +325594,7 @@ - + Any muscle organ that is part of a forelimb zeugopod (lower arm)[Automatically generated definition]. EMAPA:32622 FMA:37371 @@ -325606,14 +325608,14 @@ UBERON:0004254 forelimb zeugopod muscle - + - + prolog @@ -325666,7 +325668,7 @@ - + Any muscle organ that is part of a forelimb stylopod (upper arm)[Automatically generated definition]. the FMA class 'muscle of arm' belongs here, do not move See notes on UBERON:0001460 for possible terminological confusion over term 'arm' @@ -325684,14 +325686,14 @@ forelimb stylopod muscle - + - + prolog @@ -325751,7 +325753,7 @@ - + Any muscle organ that is part of a hindlimb zeugopod (lower leg) [Automatically generated definition]. the FMA class 'muscle of leg' belongs here, do not move[cjm] @@ -325769,14 +325771,14 @@ hindlimb zeugopod muscle - + - + prolog @@ -327352,13 +327354,13 @@ - + - + @@ -327374,14 +327376,14 @@ eye muscle - + - + MA @@ -327503,7 +327505,7 @@ - + The bilaminar epithelium formed from the myotome and dermatome. Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis. Within the dermomyotome there is also a medio-lateral difference. The central region makes dermis, the mesenchymal connective tissue of the back skin. The medial region (closest to neural tube) makes epaxial muscle, and the lateral region (furthest from neural tube) makes hypaxial muscle[http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=eurekah&part=A66768]. Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis.[TAO] @@ -327526,7 +327528,7 @@ UBERON:0004290 dermomyotome - + @@ -327545,7 +327547,7 @@ - + EHDAA2 ZFA @@ -327793,8 +327795,8 @@ - - + + @@ -327814,24 +327816,24 @@ parasympathetic nerve - + - + - + NCBIBook:NBK10065 - + NCBIBook:NBK10065 @@ -331869,7 +331871,7 @@ - + @@ -331902,14 +331904,14 @@ Terminology notes. we include calvarium as a synonym, but Gray's Anatomy's list includes the Ethmoid and Sphenoid bone in the Calvaria. Some books (and HPO) state that calvaria consists of just the frontal bone, parietal bone, temporal bone, and occipital bone. Note vault may not be precisely equivalent to calvaria vault of skull - + - + small pharyngeal arch and sclerotomal contribution @@ -331968,11 +331970,11 @@ - - - - - + + + + + A membranous sac that develops from the posterior part of the alimentary canal in the embryos of mammals, birds, and reptiles, and it is important in the formation of the umbilical cord and placenta in mammals[VHOG]. A membranous sac that develops from the posterior part of the alimentary canal in the embryos of mammals, birds, and reptiles, and it is important in the formation of the umbilical cord and placenta in mammals. [TFD][VHOG] Structures homologous to the four extraembryonic membranes of reptiles and birds appear in mammals: amnion, chorion, yolk sac, and allantois.[well established][VHOG] @@ -331997,55 +331999,55 @@ allantois http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray25.png - + - + - + - + - + - + EHDAA2-modified - + Hymans - + Hymans - + hindgut diverticulum endoderm ISBN:0073040584 - + ISBN:0073040584 @@ -332286,14 +332288,14 @@ - + - + Outermost layer of cells in the blastodermic vesicle, which will develop into the trophoblast layer and then contact the endometrium and take part in establishing the embryo's means of nutrition. distinction between trophectoderm and trophoblast unclear/inconsistent in many sources The outer cellular layer of the mammalian blastocyst. [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.750, see_Kardong_KV][VHOG] @@ -332311,11 +332313,11 @@ trophectoderm - + - + @@ -332328,13 +332330,13 @@ - + EHDAA2 - + EHDAA2 @@ -332378,14 +332380,14 @@ - + - + @@ -332410,11 +332412,11 @@ gubernaculum (male or female) http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1138.png - + - + @@ -332427,13 +332429,13 @@ - + BTO - + Wikipedia @@ -332506,7 +332508,7 @@ - + @@ -332534,14 +332536,14 @@ developmentally_induced_by Fgf10, capable of initiating limb forming interactions between endoderm and mesoderm limb bud - + - + ISBN:9780878932504 @@ -333250,9 +333252,9 @@ - - - + + + The fibrous cord that connects the tip of the styloid process of the temporal bone to the lesser horn of the hyoid bone. FMA:72308 MA:0002957 @@ -333266,15 +333268,15 @@ stylohyoid ligament - + - + - + @@ -333287,19 +333289,19 @@ - + Wikipedia - + Wikipedia - + MP-implied-by-def @@ -333459,7 +333461,6 @@ - @@ -333468,7 +333469,7 @@ - + @@ -333524,14 +333525,14 @@ pharyngeal arch artery http://upload.wikimedia.org/wikipedia/commons/8/84/Gray473.png - + - + ZFA @@ -333810,7 +333811,7 @@ - + A transparent homogeneous acellular layer found between the substantia propria and the endothelial layer of the cornea[MP]. Acellular anatomical structure composed of collagen, Descemet's membrane is secreted as a basement membrane of the corneal endothelium. Located between the stroma and the corneal endothelium, it is approximately 0.15 micrometer thick at 6 months post-fertilization.[ZFIN] @@ -333840,14 +333841,14 @@ Descemet's membrane https://github.com/obophenotype/uberon/issues/15 - + - + Cline et al @@ -333927,7 +333928,7 @@ - + @@ -333956,14 +333957,14 @@ Reichert's cartilage - + - + EHDAA2 @@ -338889,7 +338890,7 @@ - + @@ -338918,7 +338919,7 @@ metacarpus region https://upload.wikimedia.org/wikipedia/commons/2/2f/Metacarpals_numbered-en.svg - + @@ -338931,7 +338932,7 @@ - + PHENOSCAPE:ni @@ -341232,12 +341233,12 @@ - + - + A portion of cardiac muscle tissue that is part of a myocardium [Automatically generated definition]. Note placement of MA class based on parthood relationship FMA:261726 @@ -341247,14 +341248,14 @@ cardiac muscle tissue of myocardium - + - + MA @@ -342489,21 +342490,21 @@ - + A portion of trabecula carnea cardiac muscle tissue that is part of a right ventricle [Automatically generated definition]. FMA:84429 uberon UBERON:0004525 cardiac muscle tissue of trabecula carnea of right ventricle - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -342532,21 +342533,21 @@ - + A portion of trabecula carnea cardiac muscle tissue that is part of a left ventricle [Automatically generated definition]. FMA:84430 uberon UBERON:0004526 cardiac muscle tissue of trabecula carnea of left ventricle - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -343608,7 +343609,7 @@ - + Any of the series of white matter fiber tracts in the brain that run between the most lateral segment of the lentiform nucleus and the claustrum; the white matter of the external capsule contains fibers known as corticocortical association fibers which are responsible for connecting the cerebral cortex to another cortical area; the capsule appears as a thin white sheet of white matter and provides a route for cholinergic fibers from the basal forebrain to the cerebral cortex; it eventually joins the internal capsule around the lentiform nucleus. brain external capsule external capsule @@ -343634,14 +343635,14 @@ external capsule of telencephalon http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg - + - + FMA @@ -343689,7 +343690,7 @@ - + A zone of the ethmoid that is received into the ethmoidal notch of the frontal bone and roofs in the nasal cavities. [WP,modified]. BTO:0004141 EMAPA:19201 @@ -343707,14 +343708,14 @@ cribriform plate http://upload.wikimedia.org/wikipedia/commons/9/93/Gray149.png - + - + MA @@ -343948,7 +343949,7 @@ - + @@ -343994,7 +343995,7 @@ gastroesophageal sphincter - + @@ -344006,7 +344007,7 @@ - + MA @@ -344327,7 +344328,7 @@ - + EMAPA:37229 FMA:22926 @@ -344343,14 +344344,14 @@ Some sources distinguish between the "proper palmar digital veins", which are more distal, and the "common palmar digital veins", which are more proximal. proper palmar digital vein - + - + FMA/obol @@ -344589,7 +344590,6 @@ The part of the cardiovascular system consisting of all arteries. - The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG] BTO:0004690 EHDAA2:0000143 @@ -344601,7 +344601,6 @@ VHOG:0000273 uberon UBERON:0004572 - arterial system @@ -344756,7 +344755,6 @@ The part of the cardiovascular system consisting of all venous vessels. In vertebrates with a double circulation, this can be divided into systemic and pulmonary portions. - The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG] BTO:0004692 EHDAA2:0002171 @@ -344770,7 +344768,6 @@ vein system uberon UBERON:0004582 - venous system @@ -345471,7 +345468,7 @@ - + The third of the seven cervical vertebrae[ncit,modified]. under discussion: whether to generalize this beyond mammals, making it purely order-defined elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae @@ -345495,14 +345492,14 @@ mammalian cervical vertebra 3 - + - + FMA @@ -345549,7 +345546,7 @@ - + The fourth of the seven cervical vertebrae[ncit,modified]. elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae @@ -345570,14 +345567,14 @@ mammalian cervical vertebra 4 - + - + FMA @@ -345624,7 +345621,7 @@ - + The fifth of the seven cervical vertebrae[ncit,modified]. elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae @@ -345645,14 +345642,14 @@ mammalian cervical vertebra 5 - + - + FMA @@ -345699,7 +345696,7 @@ - + The sixth of the seven cervical vertebrae[ncit,modified]. elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae @@ -345720,14 +345717,14 @@ mammalian cervical vertebra 6 - + - + FMA @@ -345774,7 +345771,7 @@ - + Vertebra prominens is the proper name for the seventh cervical vertebra. The most distinctive characteristic of this vertebra is the existence of a long and prominent spinous process which is palpable from the skin surface, hence the name. This spinous process is thick, nearly horizontal in direction, not bifurcated, but terminating in a tubercle to which the lower end of the ligamentum nuchae is attached. The seventh cervical vertebra (C7) has the most prominent spinous process only in about 70% of people; in the remainder, either C6 or T1 (the first thoracic vertebra) will be the most prominent. The transverse processes are of considerable size, their posterior roots are large and prominent, while the anterior are small and faintly marked; the upper surface of each has usually a shallow sulcus for the eighth spinal nerve, and its extremity seldom presents more than a trace of bifurcation. The foramen transversarium may be as large as that in the other cervical vertebrae, but is generally smaller on one or both sides; occasionally it is double, sometimes it is absent. On the left side it occasionally gives passage to the vertebral artery; more frequently the vertebral vein traverses it on both sides; but the usual arrangement is for both artery and vein to pass in front of the transverse process, and not through the foramen. Sometimes the anterior root of the transverse process attains a large size and exists as a separate bone, which is known as a cervical rib. elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae @@ -345798,14 +345795,14 @@ mammalian cervical vertebra 7 - + - + FMA @@ -345926,7 +345923,7 @@ - + The second lumbar vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -345945,14 +345942,14 @@ lumbar vertebra 2 - + - + FMA @@ -345993,7 +345990,7 @@ - + The third lumbar vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -346012,14 +346009,14 @@ lumbar vertebra 3 - + - + FMA @@ -346054,7 +346051,7 @@ - + The fourth lumbar vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -346072,14 +346069,14 @@ lumbar vertebra 4 - + - + FMA @@ -346114,7 +346111,7 @@ - + The fifth lumbar vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -346133,14 +346130,14 @@ lumbar vertebra 5 - + - + FMA @@ -346443,7 +346440,7 @@ - + The second thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -346462,14 +346459,14 @@ thoracic vertebra 2 - + - + FMA @@ -346510,7 +346507,7 @@ - + The third thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -346529,14 +346526,14 @@ thoracic vertebra 3 - + - + FMA @@ -346577,7 +346574,7 @@ - + The fourth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -346596,14 +346593,14 @@ thoracic vertebra 4 - + - + FMA @@ -346644,7 +346641,7 @@ - + The fifth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -346663,14 +346660,14 @@ thoracic vertebra 5 - + - + FMA @@ -346711,7 +346708,7 @@ - + The sixth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -346730,14 +346727,14 @@ thoracic vertebra 6 - + - + FMA @@ -346778,7 +346775,7 @@ - + The seventh thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -346797,14 +346794,14 @@ thoracic vertebra 7 - + - + FMA @@ -346845,7 +346842,7 @@ - + The ninth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -346864,14 +346861,14 @@ thoracic vertebra 9 - + - + FMA @@ -346912,7 +346909,7 @@ - + The tenth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -346931,14 +346928,14 @@ thoracic vertebra 10 - + - + FMA @@ -346979,7 +346976,7 @@ - + The eleventh thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -346998,14 +346995,14 @@ thoracic vertebra 11 - + - + FMA @@ -347046,7 +347043,7 @@ - + The twelfth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -347065,14 +347062,14 @@ thoracic vertebra 12 - + - + FMA @@ -347325,7 +347322,7 @@ - + @@ -347362,14 +347359,14 @@ renal afferent arteriole http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png - + - + Wikipedia @@ -347439,7 +347436,7 @@ - + @@ -347470,14 +347467,14 @@ renal efferent arteriole http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png - + - + Wikipedia @@ -347992,7 +347989,7 @@ - + @@ -348026,7 +348023,7 @@ liver lobule - + @@ -348039,7 +348036,7 @@ - + FMA MA @@ -348177,7 +348174,7 @@ - + @@ -348210,14 +348207,14 @@ sphenoid bone pterygoid process http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png - + - + FMA-abduced-lr @@ -348550,8 +348547,8 @@ - - + + The temporal process of the zygomatic bone, directed backward and medialward, is concave, presenting medially a rough, triangular area, for articulation with the maxilla, and laterally a smooth, concave surface, the upper part of which forms the anterior boundary of the temporal fossa, the lower a part of the infratemporal fossa. Near the center of this surface is the zygomaticotemporal foramen for the transmission of the zygomaticotemporal nerve. EMAPA:37807 @@ -348569,24 +348566,24 @@ temporal process of zygomatic bone http://upload.wikimedia.org/wikipedia/commons/d/da/Gray166.png - + - + - + MA - + MA @@ -348636,8 +348633,8 @@ - - + + The zygomatic process of the temporal bone is a long, arched process projecting from the lower part of the squamous portion of the temporal bone. It articulates with the zygomatic bone. This process is at first directed lateralward, its two surfaces looking upward and downward; it then appears as if twisted inward upon itself, and runs forward, its surfaces now looking medialward and lateralward. UBERON:0004653 EMAPA:19015 @@ -348655,24 +348652,24 @@ zygomatic process of temporal bone http://upload.wikimedia.org/wikipedia/commons/9/96/Gray137.png - + - + - + MA - + MA @@ -349327,7 +349324,7 @@ - + @@ -349359,14 +349356,14 @@ interventricular septum membranous part - + - + Wikipedia @@ -349730,7 +349727,7 @@ - + The portion of the frontal lobe medial to the medial orbital gyrus is named the gyrus rectus (or straight gyrus), and is continuous with the superior frontal gyrus on the medial surface. A specific function for the gyrus rectus has not yet been elucidated. BAMS:GRe @@ -349754,7 +349751,7 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb - + @@ -349767,7 +349764,7 @@ - + FMA @@ -350314,8 +350311,8 @@ - - + + A triangular field that is a lateralward projection of the postero-lateral part of the anterior column[WP, modified by cjm]. TODO - check relationship to spinal cord lateral column. in FMA funiculus=white and horn=grep BIRNLEX:2666 @@ -350341,24 +350338,24 @@ spinal cord lateral horn http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray675.png - + - + - + FMA - + FMA-abduced-lr @@ -350853,7 +350850,7 @@ - + Part of fornix adjacent to the crura where they join together at the midline underneath the corpus callosum. The columns (anterior pillars; fornicolumns) of the fornix arch downward in front of the interventricular foramen and behind the anterior commissure, and each descends through the gray substance in the lateral wall of the third ventricle to the base of the brain, where it ends in the corpus mammillare. [WP,unvetted][Wikipedia:Columns_of_fornix]. @@ -350882,14 +350879,14 @@ body of fornix http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png - + - + FMA NIF @@ -351103,7 +351100,7 @@ - + A transitional zone between the presubiculum and the entorhinal area in the mouse (Paxinos-2001), the rat (Swanson-1998) and the primate (Zilles-1990). Defined on the basis of cytoarchitecture, it is more similar to the presubiculum than to the entorhinal area (Zilles-1990). (from Brain Info). @@ -351128,14 +351125,14 @@ UBERON:0004683 parasubiculum - + - + NIFSTD @@ -351199,8 +351196,8 @@ - - + + The raphe nuclei are thin plates of cells in and immediately adjacent to the sagittal plane. BAMS:RA EMAPA:35721 @@ -351229,25 +351226,25 @@ raphe nuclei http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png - + - + - + GO Wikipedia - + Wikipedia @@ -351352,7 +351349,7 @@ - + @@ -351365,7 +351362,7 @@ - + @@ -351393,11 +351390,11 @@ gastro-splenic ligament http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray1039.png - + - + @@ -351410,14 +351407,14 @@ - + FMA Wikipedia - + MA-modified Wikipedia @@ -351476,8 +351473,8 @@ - - + + @@ -351509,11 +351506,11 @@ Multiple sources support greater omentum assignment. E.g. http://medical-dictionary.thefreedictionary.com/splenorenal+ligament. We change the MA part_of assignment to develops_from lieno-renal ligament - + - + @@ -351526,13 +351523,13 @@ - + FMA - + MA-modified @@ -351667,7 +351664,7 @@ - + The nasofrontal vein is a vein in the eye which drains to the superior ophthalmic vein. EMAPA:37227 @@ -351681,14 +351678,14 @@ naso-frontal vein - + - + FMA/obol @@ -351716,7 +351713,7 @@ - + A vein running parallel to the superior and inferior pancreatico-duodenal arteries that drains blood from the pancreas and duodenum into the superior mesenteric or portal veins. EMAPA:37177 FMA:15398 @@ -351734,14 +351731,14 @@ UBERON:0004690 pancreaticoduodenal vein - + - + FMA/obol @@ -351938,7 +351935,7 @@ - The specialized epithelium of the Peyer's patch. + The specialized epithelial layer covering the entire Peyer's patch, including both the follicular and interfollicular areas and forming part of the gut-associated lymphoid tissue. EMAPA:36506 MA:0000731 Peyer's patch epithelium @@ -351950,7 +351947,7 @@ - The specialized epithelium of the Peyer's patch. + The specialized epithelial layer covering the entire Peyer's patch, including both the follicular and interfollicular areas and forming part of the gut-associated lymphoid tissue. ISBN:0-8153-1691-7 MGI:cwg MP:0002388 @@ -351960,6 +351957,7 @@ Peyer's patch epithelium MA:0000731 + PMID:31813624 @@ -352724,12 +352722,12 @@ - + - + @@ -352760,7 +352758,7 @@ - + @@ -352783,11 +352781,11 @@ paired limb/fin - + - + @@ -352800,13 +352798,13 @@ - + VSAO - + definitional @@ -352888,7 +352886,7 @@ - + @@ -352910,14 +352908,14 @@ pelvic appendage - + - + definitional @@ -352986,7 +352984,7 @@ - + @@ -353010,14 +353008,14 @@ pectoral appendage - + - + definitional @@ -354036,7 +354034,7 @@ - + @@ -354061,14 +354059,14 @@ crista ampullaris http://upload.wikimedia.org/wikipedia/commons/e/ec/Semicircular_canal_-_ampulla.png - + - + MA @@ -354325,7 +354323,7 @@ - + @@ -354371,14 +354369,14 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb - + - + Wikipedia @@ -354497,31 +354495,28 @@ - + - In the blood supply of the kidney, the vasa recta renis (or straight arteries of kidney, or straight arterioles of kidney) form a series of straight capillaries in the medulla. They lie parallel to the loop of Henle. These vessels branch off the efferent arterioles of juxtamedullary nephrons (those nephrons closest to the medulla), enter the medulla, and surround the loop of Henle. - TODO - is this a vein or set of veins? in MA it is a venous blood vessel + A group of microvessels that are part of the kidney. A vasa recta has a hairpin-like shape, entering the renal medulla as the straight arterioles and surrounds the loop of Henle, forming a capillary network. Finally it leaves the renal medulla to ascend to the cortex as the straight venules. The primary function of the vasa recta is to facilitate countercurrent exchange, which is essential for the kidney's ability to concentrate urine EMAPA:30043 FMA:72006 MA:0002595 Wikipedia:Vasa_recta galen:ArteriaeRectae - arteriolae rectae renis kidney vasa recta - renal medullary capillary - set of straight arterioles of kidney - straight arterioles of kidney vasa recta of kidney vasa recta renis + arteriolae rectae renis + renal medullary capillary + set of straight arterioles of kidney + straight arterioles of kidney uberon - arteria recta - arteriae rectae arteriolae rectae renis arteriolae recti vasa rectae @@ -354534,17 +354529,10 @@ - In the blood supply of the kidney, the vasa recta renis (or straight arteries of kidney, or straight arterioles of kidney) form a series of straight capillaries in the medulla. They lie parallel to the loop of Henle. These vessels branch off the efferent arterioles of juxtamedullary nephrons (those nephrons closest to the medulla), enter the medulla, and surround the loop of Henle. + A group of microvessels that are part of the kidney. A vasa recta has a hairpin-like shape, entering the renal medulla as the straight arterioles and surrounds the loop of Henle, forming a capillary network. Finally it leaves the renal medulla to ascend to the cortex as the straight venules. The primary function of the vasa recta is to facilitate countercurrent exchange, which is essential for the kidney's ability to concentrate urine + PMID:23126245 Wikipedia:Vasa_recta - - - - arteriolae rectae renis - FMA:72006 - FMA:TA - - @@ -354554,46 +354542,42 @@ - renal medullary capillary - EMAPA:30043 - - - - - set of straight arterioles of kidney + vasa recta of kidney FMA:72006 - straight arterioles of kidney + vasa recta renis FMA:72006 + FMA:TA + - - vasa recta of kidney + + arteriolae rectae renis FMA:72006 + FMA:TA + - - vasa recta renis - FMA:72006 - FMA:TA - + + renal medullary capillary + EMAPA:30043 - - arteria recta - Wikipedia:Vasa_recta + + set of straight arterioles of kidney + FMA:72006 - - arteriae rectae - Wikipedia:Vasa_recta + + straight arterioles of kidney + FMA:72006 @@ -355317,8 +355301,8 @@ - - + + @@ -355333,25 +355317,25 @@ UBERON:0004737 metanephric collecting duct - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + Wikipedia-abduced @@ -355385,21 +355369,21 @@ - + Juxtaglomerular apparatus of the mature vertebrate kidney, or metanephros. juxtaglomerular apparatus of metanephros uberon UBERON:0004738 metanephric juxtaglomerular apparatus - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -355433,7 +355417,7 @@ - + The glomus forms from the splanchnic intermediate mesoderm and is the vascularized filtration unit, filtering the blood before it enters the tubules. The glomus is external to the nephron and extends over more than one body segment. a glomus differs from a glomerulus in that each vascular glomus services several tubules Paired highly vascularized portion of the pronephros. Left and right glomeruli are fused at the midline. Begins to function between 40 and 48hpf. Drummond, 2000.[TAO] @@ -355457,14 +355441,14 @@ UBERON:0004739 pronephric glomerulus - + - + XAO @@ -355758,15 +355742,15 @@ - + - - + + The dentary is a dermal bone that forms the antero-lateral part of the lower jaw in fishes and amphibians, extending to the whole lower jaw in mammals[VHOG,modified]. Dermal bone that is usually the anteriormost bone of the lower jaw, and that articulates with the angular, or anguloarticular bone, posteriorly, and carries part of the mandibular sensory canal and pore openings of the mandibular sensory canal on its lateral surface. The dentary is a paired bone.[TAO] Ossified element of intramembranous origin that invests the lateral margin of Meckel's cartilage thereby forming the lateral side of the mandible in anurans and salamanders (Duellman & Trueb, 1994:293). In caecilians, the dentary is part of a compound bone termed the pseudodentary.[AAO] @@ -355790,15 +355774,15 @@ dentary - + - + - + @@ -355811,7 +355795,7 @@ - + mandibular series ISBN:0073040584 ZFA @@ -355819,13 +355803,13 @@ - + EHDAA2 - + EHDAA2-modified @@ -356077,8 +356061,8 @@ - - + + TODO - resolve part_of relationships Dermal and endochondral compound bone that results from the fusion of the dermal angular and the endochondral articular and forms the posterior part of the lower jaw. It articulates with the dentary anteriorly and with the retroarticular postero-medially. The anguloarticular is paired.[TAO] Endochondral ossification of the posterior articular part of Meckel's cartilage.[AAO] @@ -356106,11 +356090,11 @@ articular/anguloarticular https://github.com/obophenotype/uberon/issues/98 - + - + @@ -356129,14 +356113,14 @@ - + ZFA-modifed cjm - + ZFA @@ -356261,9 +356245,9 @@ - - - + + + A tooth- or denticle-covered plate which is attached to the sphenoid stem[Palaeos]. Azygous, dermal bone of intramembranous origin that underlies the ventral surface of the braincase in anurans and salamanders. In caecilians, the parasphenoid and other bones are fused to form the Os basale.[AAO] Dermal bone that forms part of the base of the skull and the lateral walls of the braincase through its ascending processes. It may articulate with the vomer anteriorly, the prootics and exoccipitals laterally, and the basioccipital posteriorly. The parasphenoid is an elongate median bone.[TAO] @@ -356281,34 +356265,34 @@ UBERON:0004745 parasphenoid - + - + - + - + ZFA - + ZFA - + ZFA-modified @@ -356798,9 +356782,9 @@ - - - + + + Paired element that articulates anterioly with the basihyal and posteriorly with the ceratohyal hypohyals.[AAO] Replacement bone that is bilaterally paired and articulates with the anterior ceratohyal posteriorly.[TAO] relationship loss: part_of hyoid apparatus skeleton (AAO:0000682)[AAO] @@ -356812,15 +356796,15 @@ UBERON:0004751 hypohyal bone - + - + - + @@ -356833,19 +356817,19 @@ - + AAO - + TAO - + TAO @@ -356890,8 +356874,8 @@ - - + + The dorsal component of the mandibular arch. Column of catilage, remnant in the adult of the larval palatoquadrate cartilage, that is located lateral or antero-lateral to the auditory capsule.[AAO] AAO:0000379 @@ -356906,11 +356890,11 @@ UBERON:0004752 palatoquadrate cartilage - + - + @@ -356923,13 +356907,13 @@ - + AAO - + ZFA @@ -356979,7 +356963,7 @@ - + Skeletal element that consists of the scapula and the coracoid[VSAO, modified]. todo - decide whether to create separate classes for cartilage & ossified. Wikipedia considers this absent in Therians, but if considered as a grouping of scapula and coracoid then it would be present Fused, ossified portions of the scapula, procoracoid, and coracoid.[AAO] @@ -357000,14 +356984,14 @@ UBERON:0004753 scapulocoracoid - + - + VSAO @@ -357180,7 +357164,7 @@ - + A specialized form of connective tissue in which the extracellular matrix is firm, providing the tissue with resilience, and/or mineralized and that functions in mechanical and structural support.[VSAO]. A specialized form of connective tissue in which the extracellular matrix is firm, providing the tissue with resilience, and/or mineralized and that functions in mechanical and structural support.[VSAO] EMAPA:37744 @@ -357194,7 +357178,7 @@ Four classes of mineralized tissues are found in vertebrates: bone, cartilage, dentine, and enamel. We think of cartilage and bone as skeletal tissues and of enamel and dentine as dental tissues, but enamel and dentine arose evolutionarily together with bone as skeletal tissues in the dermal skeleton (exoskeleton) of early vertebrates. Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone. Cartilage, on the other hand, provided the basis for the second vertebrate skeletal system, the endoskeleton (Smith and Hall, 1990; Hall, 1998a,b). some invertebrate skeletal tissues have surprisingly bone-like features. Examples include chondrocytes interconnected by cell processes in cephalopod cartilages (Cole and Hall, 2004a,b), and the calcium phosphate layer in the shells of brachiopods (Rodland et al., 2003). However, neither bone nor mineralized cartilage have been found in invertebrates. Editors notes: TODO - develops_from skeletal tissue - + @@ -357207,7 +357191,7 @@ - + 2012-08-14 VSAO:0000015 VSAO @@ -357546,7 +357530,7 @@ - + The primitive cartilagionous skeletal structure of the fetal skull that grows to envelop the rapidly growing embyonic brain. In humans, the chondrocranium begins forming at 28 days from mesenchymal condensations and is fully formed between week 7 and 9 of fetal development. While the majority of the chondrocranium is succeeded by the bony skull in most higher vertebrates, some components do persist into adulthood.[1] In Cartilagious fishes and Agnathans, the chondrocranium persist throughout life.[2] Embryologically, the chondrocranium represent the basal cranial structure, and lay the base for the formation of the endocranium in higher vertebrates[WP]. in contrast to chondrocranium, this structure is entirely cartiliginous. In Chondricthyes this is the same as the neurocranium. FMA:76621 is an undefined fetal structure, so we assume the correct placement is here. Note that this is distinct from MA:0000317 which is the uberon:neurocranium (the part of the cranium that encloses the brain) AAO:0000094 @@ -357567,7 +357551,7 @@ UBERON:0004761 cartilaginous neurocranium - + @@ -357580,7 +357564,7 @@ - + PMC1571569 @@ -357749,7 +357733,7 @@ - + Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles. Organ entity that is typically involved in mechanical support and may have different skeletal tissue compositions at different stages.[VSAO] Organ entity that may have different tissue compositions at different stages and is typically involved in mechanical support.[TAO] @@ -357765,14 +357749,14 @@ skeletal element - + - + VSAO @@ -358007,7 +357991,7 @@ - + @@ -358046,14 +358030,14 @@ UBERON:0004770 articular system - + - + FMA @@ -358230,7 +358214,7 @@ - + @@ -358255,7 +358239,7 @@ eyelid tarsus - + @@ -358268,7 +358252,7 @@ - + cjm @@ -358492,8 +358476,6 @@ - - @@ -358601,8 +358583,6 @@ - - @@ -358834,7 +358814,7 @@ - + A lamina propria that is part of a respiratory system [Automatically generated definition]. EMAPA:37576 MA:0001821 @@ -358849,14 +358829,14 @@ UBERON:0004779 respiratory system lamina propria - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -358932,7 +358912,7 @@ - + A lamina propria that is part of a gastrointestinal system. MA:0001899 NCIT:C49299 @@ -358941,14 +358921,14 @@ UBERON:0004780 gastrointestinal system lamina propria - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -358983,7 +358963,7 @@ - + A lamina propria that is part of a gallbladder [Automatically generated definition]. EMAPA:35371 FMA:278594 @@ -359002,14 +358982,14 @@ UBERON:0004781 gallbladder lamina propria - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -359603,10 +359583,10 @@ - - - - + + + + A mucosa that is part of a gastrointestinal system. BTO:0000546 BTO:0005568 @@ -359622,44 +359602,44 @@ The gut mucosa of amphioxus has insulin-secreting cells. http://www.ncbi.nlm.nih.gov/pubmed/16417468 gastrointestinal system mucosa - + - + - + - + - + PMID:16417468 - + PMID:16417468 - + PMID:16417468 - + BTO-modified @@ -360052,13 +360032,13 @@ - + - + @@ -360081,14 +360061,14 @@ thymus trabecula - + - + MA @@ -362656,8 +362636,8 @@ - - + + @@ -362689,11 +362669,11 @@ pulmonary alveolus epithelium - + - + @@ -362706,13 +362686,13 @@ - + FMA - + FMA @@ -363615,7 +363595,7 @@ - + An endothelium of artery that is part of a respiratory system [Automatically generated definition]. EMAPA:37566 @@ -363636,14 +363616,14 @@ respiratory system arterial endothelium - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -364727,9 +364707,9 @@ - - - + + + Dermal bone that covers the otic region and may articulate with its antimere medially, with the frontal bone anteriorly, the pterotic laterally, the supraoccipital medio-posteriorly, and the epiotic and extrascapula latero-posteriorly. The parietal is a paired bone.[TAO]. Dermal bone that covers the otic region and may articulate with its antimere medially, with the frontal bone anteriorly, the pterotic laterally, the supraoccipital medio-posteriorly, and the epiotic and extrascapula latero-posteriorly. The parietal is a paired bone.[TAO] relationship loss: overlaps frontal-parietal joint (TAO:0005255)[TAO] @@ -364749,34 +364729,34 @@ UBERON:0004865 actinopterygian parietal bone - + - + - + - + ZFA - + ZFA - + PMID:11523816 @@ -364880,9 +364860,9 @@ - - - + + + Dermal bone that bears part of the supraorbital canal and usually covers a large area of the neurocranium occupying part of the ethmoidal, orbitosphenoid, and otic regions. Commonly, the frontal bone articulates with its antimere medially, with lateral ethmoid, orbitosphenoid and pterosphenoid ventrolaterally, with supraorbital bone(s), autosphenotic and pterotic laterally, and with parietal posteriorly.[TAO]. Dermal bone that bears part of the supraorbital canal and usually covers a large area of the neurocranium occupying part of the ethmoidal, orbitosphenoid, and otic regions. Commonly, the frontal bone articulates with its antimere medially, with lateral ethmoid, orbitosphenoid and pterosphenoid ventrolaterally, with supraorbital bone(s), autosphenotic and pterotic laterally, and with parietal posteriorly.[TAO] relationship loss: overlaps frontal-parietal joint (TAO:0005255)[TAO] @@ -364902,15 +364882,15 @@ UBERON:0004866 actinopterygian frontal bone - + - + - + @@ -364923,19 +364903,19 @@ - + ZFA - + PMID:11523816 - + ZFA-modified @@ -365142,7 +365122,7 @@ - + A part of the epithalamus present in some animal species. The eye may be photoreceptive and is usually associated with the pineal gland, regulating circadian rhythmicity and hormone production for thermoregulation. The parietal eye is a part of the epithalamus, which can be divided into two major parts; the epiphysis (the pineal organ, or pineal gland if mostly endocrine) and the parietal organ (often called the parietal eye, or third eye if it is photoreceptive). It arises as an anterior evagination of the pineal organ or as a separate outgrowth of the roof of the diencephalon. In some species, it protrudes through the skull.[4] The parietal eye uses a different biochemical method of detecting light than rod cells or cone cells in a normal vertebrate eye[WP]. @@ -365153,7 +365133,7 @@ UBERON:0004869 parietal organ - + @@ -365166,7 +365146,7 @@ - + cjm @@ -365364,7 +365344,7 @@ - + @@ -365387,14 +365367,14 @@ splanchnopleure http://upload.wikimedia.org/wikipedia/commons/2/28/Gray16.png - + - + EHDAA2 @@ -365422,7 +365402,7 @@ - + @@ -365445,14 +365425,14 @@ somatopleure http://upload.wikimedia.org/wikipedia/commons/2/28/Gray16.png - + - + EHDAA2 @@ -365518,9 +365498,9 @@ - - - + + + @@ -365541,34 +365521,34 @@ urogenital fold - + - + - + - + EHDAA2 - + Wikipedia - + EHDAA2 @@ -366831,7 +366811,7 @@ - + The fetal urogenital sinus (from which the prostate derives) is a simple cylinder of stratified basal epithelium, surrounded by mesenchyme and positioned between the embryonic bladder and pelvic urethra. we follow EHDAA2 in dividing the UGS into epithelium and lumen EHDAA2:0004061 @@ -366842,14 +366822,14 @@ UBERON:0004902 urogenital sinus epithelium - + - + EHDAA2 @@ -367363,8 +367343,8 @@ - - + + EHDAA2:0000171 EMAPA:16561 EMAPA_RETIRED:16565 @@ -367375,11 +367355,11 @@ biliary bud http://upload.wikimedia.org/wikipedia/commons/4/4f/Gray1088.png - + - + @@ -367392,13 +367372,13 @@ - + EHDAA2 - + EHDAA2-modified @@ -367755,8 +367735,8 @@ - - + + A urethral sphincter muscle which constricts the internal urethral orifice. It is the junction of the urethra with the urinary bladder. The muscle is made of smooth muscle, so therefore it is under involuntary control. It is kept tonically contracted by the sympathetic nervous system and during micturition, is relaxed via the parasympathetic nervous system. This is the primary muscle for preventing the release of urine[WP]. FMA:45769 SCTID:277856008 @@ -367775,25 +367755,25 @@ internal urethral sphincter http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray407.png - + - + - + Sympathetics from L1-L2 through lumbar splanchnic and hypogastric/pelvic plexus dbpedia - + Sympathetics from L1-L2 through lumbar splanchnic and hypogastric/pelvic plexus dbpedia @@ -367853,8 +367833,8 @@ - - + + EMAPA:37790 FMA:85274 MA:0002401 @@ -367877,25 +367857,25 @@ http://upload.wikimedia.org/wikipedia/commons/7/70/Gray1166.png http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png - + - + - + Junction of the inferior rami of the pubis and ischium to the extent of 1.25 to 2 cm. dbpedia - + Junction of the inferior rami of the pubis and ischium to the extent of 1.25 to 2 cm. dbpedia @@ -368053,7 +368033,7 @@ - + @@ -368106,14 +368086,14 @@ postnatal subventricular zone - + - + GO @@ -369488,7 +369468,7 @@ - + The submucous layer of the wall of the urinary bladder. BTO:0002117 @@ -369507,14 +369487,14 @@ submucosa of urinary bladder - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -370277,7 +370257,7 @@ - + A mucosa that is part of a ureter [Automatically generated definition]. FMA:15894 SCTID:40476001 @@ -370298,14 +370278,14 @@ UBERON:0004980 mucosa of ureter - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -371744,6 +371724,7 @@ A mucosa that is part of an ascending colon [Automatically generated definition]. + FMA:15005 ascending colon mucosa ascending colon mucosa of organ @@ -371754,6 +371735,7 @@ organ mucosa of ascending colon uberon UBERON:0004990 + mucosa of ascending colon @@ -371829,6 +371811,7 @@ A mucosa that is part of a transverse colon [Automatically generated definition]. + FMA:15012 mucosa of organ of transverse colon mucous membrane of transverse colon @@ -371839,6 +371822,7 @@ transverse colon organ mucosa uberon UBERON:0004991 + mucosa of transverse colon @@ -371914,6 +371898,7 @@ A mucosa that is part of a descending colon [Automatically generated definition]. + FMA:15019 descending colon mucosa descending colon mucosa of organ @@ -371924,6 +371909,7 @@ organ mucosa of descending colon uberon UBERON:0004992 + mucosa of descending colon @@ -371999,6 +371985,7 @@ A mucosa that is part of a sigmoid colon [Automatically generated definition]. + FMA:15026 mucosa of organ of sigmoid colon mucous membrane of sigmoid colon @@ -372009,6 +371996,7 @@ sigmoid colon organ mucosa uberon UBERON:0004993 + mucosa of sigmoid colon @@ -372843,7 +372831,7 @@ - + A mucosa that is part of a pyloric antrum [Automatically generated definition]. BTO:0004107 FMA:17055 @@ -372876,14 +372864,14 @@ UBERON:0004997 mucosa of pyloric antrum - + - + BTO @@ -380626,7 +380614,7 @@ - + @@ -380650,7 +380638,7 @@ gizzard - + @@ -380663,7 +380651,7 @@ - + Wikipedia @@ -380776,7 +380764,7 @@ - + A nerve cord in the dorsal mid-line that is the most prominent nerve cord. BTO:0002329 @@ -380787,14 +380775,14 @@ UBERON:0005054 primary dorsal nerve cord - + - + http://tolweb.org/Chordata/2499 @@ -381177,31 +381165,31 @@ - - + + Missing definition for term UBERON:0005063. Please replace it using linked reference. uberon UBERON:0005063 left ventricular compact myocardium - + - + - + GO - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -381229,20 +381217,20 @@ - + Missing definition for term UBERON:0005064. Please replace it using linked reference. uberon UBERON:0005064 left ventricular trabecular myocardium - + - + GO @@ -381269,31 +381257,31 @@ - - + + Missing definition for term UBERON:0005065. Please replace it using linked reference. uberon UBERON:0005065 right ventricular compact myocardium - + - + - + GO - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -381321,20 +381309,20 @@ - + Missing definition for term UBERON:0005066. Please replace it using linked reference. uberon UBERON:0005066 right ventricular trabecular myocardium - + - + GO @@ -381625,7 +381613,7 @@ - + @@ -381651,14 +381639,14 @@ UBERON:0005075 forebrain-midbrain boundary - + - + definitional @@ -382091,7 +382079,7 @@ - + @@ -382110,14 +382098,14 @@ UBERON:0005086 hair follicle placode - + - + Wikipathways:WP2062 @@ -382175,7 +382163,7 @@ - + @@ -382199,7 +382187,7 @@ UBERON:0005087 tooth placode - + @@ -382212,7 +382200,7 @@ - + check for other species Wikipedia:Tooth_development @@ -382286,7 +382274,7 @@ - + @@ -382299,7 +382287,7 @@ UBERON:0005088 sebaceous gland placode - + @@ -382312,7 +382300,7 @@ - + Wikipathways:WP2062 @@ -382340,7 +382328,7 @@ - + @@ -382353,7 +382341,7 @@ UBERON:0005089 sweat gland placode - + @@ -382366,7 +382354,7 @@ - + Wikipathways:WP2062 @@ -382609,7 +382597,7 @@ - + Missing definition for term UBERON:0005095. Please replace it using linked reference. class added for consistency with GO - consider merging with kidney mesenchyme. uberon @@ -382617,14 +382605,14 @@ UBERON:0005095 kidney rudiment - + - + GO @@ -382740,7 +382728,7 @@ - + The connecting tubule is a tubular segment of the nephron; it connects the distal convoluted tubule to the collecting duct[GO]. BTO:0004539 @@ -382758,14 +382746,14 @@ renal connecting tubule http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png - + - + Wikipedia @@ -383178,8 +383166,8 @@ - - + + A metanephric nephron is the functional unit of the metanephros[GO]. The primitive form of the vertebrate nephron consists of a vascular filtration surface overlain with podocytes, a specialized coelomic cavity to receive the ultrafiltrate, and a tubule for modification to final urine. Although previously thought to be unique to the vertebrates, this design is now known to be widespread among invertebrates, including most of the protochordates, and especially their larvae.[well established][VHOG] UBERON:0005142 @@ -383188,25 +383176,25 @@ UBERON:0005110 metanephric nephron - + - + - + Wikipedia Wikipedia:Nephron - + Bgee:AN @@ -383279,20 +383267,20 @@ - + EHDAA2:0001140 uberon UBERON:0005113 metanephric cortex mesenchyme - + - + EHDAA2 @@ -383314,20 +383302,20 @@ - + The metanephric ascending thin limb is a segment of a nephron tubule in the metanephros lying in the inner medulla that is permeable to ions but not to water and has a simple epithelium; active transepithelial solute transport is absent[GO]. uberon UBERON:0005114 metanephric ascending thin limb - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -383355,32 +383343,32 @@ - - + + The metanephric cortical collecting duct is the portion of the metanephric collecting duct that resides in the renal cortex[GO]. uberon UBERON:0005115 metanephric cortical collecting duct - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -383409,20 +383397,20 @@ - + It extends to the tip of the metanephric loop of Henle[GO]. uberon UBERON:0005116 metanephric descending thin limb - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -383451,21 +383439,21 @@ - + The metanephric distal convoluted tubule is a portion of the metanephric nephron tubule that connects the metanephric loop of Henle to the collecting duct[GO]. VHOG:0001569 uberon UBERON:0005117 metanephric distal convoluted tubule - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -383494,32 +383482,32 @@ - - + + The metanephric early distal convoluted tubule contains metanephric DCT cells and is vasopressin-insensitive[GO]. uberon UBERON:0005118 metanephric early distal convoluted tubule - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -383546,20 +383534,20 @@ - + The metanephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the metanephros, which helps to support the capillary loops in a renal glomerulus[GO]. uberon UBERON:0005119 metanephric glomerular mesangium - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -383588,32 +383576,32 @@ - - + + The metanephric late distal convoluted tubule contains metanephric DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive[GO]. uberon UBERON:0005120 metanephric late distal convoluted tubule - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -383677,20 +383665,20 @@ - + The metanephric macula densa is an area of specialized cells in the distal tubule of the metanephros that makes contact with the vascular pole of the glomerulus[GO]. uberon UBERON:0005122 metanephric macula densa - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -383719,20 +383707,20 @@ - + The metanephric prebend segment is a part of the metanephric descending thin limb that lies before the bend and exhibits permeabilities characteristic of the ascending limb, especially negligible water permeability[GO]. uberon UBERON:0005123 metanephric prebend segment - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -383761,21 +383749,21 @@ - + The metanephric proximal convoluted tubule is the most proximal portion of the metanephric proximal tubule and extends from the metanephric glomerular capsule to the metanephric proximal straight tubule[GO]. VHOG:0001570 uberon UBERON:0005124 metanephric proximal convoluted tubule - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -383804,21 +383792,21 @@ - + The metanephric proximal straight tubule is the part of the metanephric descending limb that extends from the metanephric proximal convoluted tubule to the metanephric descending thin tubule[GO]. TODO - place mammalian xrefs here rather than at parent uberon UBERON:0005125 metanephric proximal straight tubule - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -383846,20 +383834,20 @@ - + The S1 portion is the initial portion of the metanephric proximal convoluted tubule and is responsible for avid reabsorption of water and solutes[GO]. uberon UBERON:0005126 metanephric S1 - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -384034,21 +384022,21 @@ - + The metanephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the metanephric glomerulus[GO]. UBERON:0005143 uberon UBERON:0005133 metanephric glomerulus vasculature - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -384077,20 +384065,20 @@ - + The metanephric nephron epithelium is a tissue that covers the surface of a nephron in the metanephros[GO]. uberon UBERON:0005134 metanephric nephron epithelium - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -384119,20 +384107,20 @@ - + A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros[GO]. uberon UBERON:0005135 metanephric glomerular epithelium - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -384161,20 +384149,20 @@ - + The metanephric glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus of the metanephros[GO]. uberon UBERON:0005136 metanephric glomerular endothelium - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -384342,32 +384330,32 @@ - - + + This process pertains to the initial formation of a structure from unspecified parts[GO]. uberon UBERON:0005144 metanephric glomerular capillary - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -384431,7 +384419,7 @@ - + A metanephric nephron tubule is an epithelial tube that is part of the metanephric nephron, the functional part of the metanephros[GO]. UBERON:0005128 UBERON:0005152 @@ -384439,14 +384427,14 @@ UBERON:0005146 metanephric nephron tubule - + - + ISBN:9780878932504 @@ -384474,7 +384462,7 @@ - + @@ -384490,14 +384478,14 @@ UBERON:0005147 metanephric renal vesicle - + - + EHDAA2 @@ -384524,20 +384512,20 @@ - + The metanephric S-shaped body is the successor of the metanephric comma-shaped body that contributes to the morphogenesis of a nephron in the metanephros[GO]. uberon UBERON:0005148 metanephric S-shaped body - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -384606,21 +384594,21 @@ - + The metanephric proximal tubule is a metanephric nephron tubule that connects Bowman's capsule to the descending thin limb of the loop of Henle in the metanephros. It has a brush border epithelial morphology[GO]. UBERON:0005131 uberon UBERON:0005151 metanephric proximal tubule - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -384976,7 +384964,7 @@ - + Pelvic spurs are the externally visible portion of the vestigial remnants of legs found on each side of the vent in primitive snakes, such as boas and pythons. The remnants of a pelvis and femur, which have no connection with the spine, simply 'float' in the muscle mass. The femur protrudes from the snake's body and is covered by a corneal spur, which resembles a claw. Males' spurs are generally longer and more pointed than females', and are used for clasping and tickling during courtship and mating, as well as combat with other males in some species. this class refers to the external portion and its corneal covering rather than the combined pelvis plus femur. Wikipedia:Pelvic_spur @@ -384986,14 +384974,14 @@ UBERON:0005161 pelvic spur - + - + Wikipedia @@ -386219,7 +386207,7 @@ - + An artery in males that provides blood to the vas deferens. The artery usually arises from the anterior trunk of the superior vesical artery. It accompanies the vas deferens into the testis, where it anastomoses with the testicular artery. In this way it also supplies blood to the testis and epididymis. A small branch supplies the ureter[WP]. EMAPA:37513 @@ -386236,14 +386224,14 @@ deferent duct artery - + - + Wikipedia @@ -386293,7 +386281,7 @@ - + One of: anterior or posterior ethmoidal arteries. EMAPA:37081 MA:0001949 @@ -386307,7 +386295,7 @@ ethmoidal artery - + @@ -386320,7 +386308,7 @@ - + FMA-abduced @@ -386451,7 +386439,7 @@ - + @@ -386474,14 +386462,14 @@ spleen germinal center - + - + CL:tm @@ -386523,8 +386511,8 @@ - - + + TODO - check EHDAA:3778 EMAPA:16990 @@ -386536,11 +386524,11 @@ UBERON:0005197 segmental spinal nerve - + - + @@ -386553,13 +386541,13 @@ - + EHDAA2 - + EHDAA2 @@ -386635,7 +386623,7 @@ - + A lactiferous gland that is located in the thoracic region/breast. Most primates have one pair of mammary glands, which are thoracic. @@ -386655,14 +386643,14 @@ thoracic mammary gland - + - + BTO @@ -386716,13 +386704,13 @@ - + - - + + A macula densa that is part of an ascending limb of loop of Henle [Automatically generated definition]. TODO - unify terminology - check DST = TAL? Note EMAPA class appears to refer to this segment MA:0002604 @@ -386730,24 +386718,24 @@ UBERON:0005202 distal straight tubule macula densa - + - + - + MA - + MA @@ -387116,7 +387104,7 @@ - + @@ -387138,14 +387126,14 @@ UBERON:0005211 renal medulla interstitium - + - + MA @@ -387285,13 +387273,13 @@ - + - - + + A portion of interstitial tissue that is part of a outer medulla of kidney [Automatically generated definition]. EMAPA:28337 MA:0002621 @@ -387301,24 +387289,24 @@ UBERON:0005213 outer renal medulla interstitium - + - + - + MA - + MA @@ -387349,13 +387337,13 @@ - + - - + + A portion of interstitial tissue that is part of a inner medulla of kidney [Automatically generated definition]. EMAPA:28364 MA:0002620 @@ -387366,24 +387354,24 @@ UBERON:0005214 inner renal medulla interstitium - + - + - + MA - + MA @@ -387921,7 +387909,7 @@ - + An epithelium that is part of a hindlimb stylopod [Automatically generated definition]. EHDAA2:0002131 EMAPA:17500 @@ -387930,14 +387918,14 @@ UBERON:0005225 upper leg epithelium - + - + EHDAA2 @@ -387971,7 +387959,7 @@ - + An epithelium that is part of a toe [Automatically generated definition]. EMAPA:32946 VHOG:0001031 @@ -387982,7 +387970,7 @@ UBERON:0005226 pedal digit epithelium - + @@ -387995,7 +387983,7 @@ - + EHDAA2 @@ -388043,7 +388031,7 @@ - + An epithelium that is part of a finger [Automatically generated definition]. EHDAA2:0000406 EMAPA:32647 @@ -388055,14 +388043,14 @@ UBERON:0005227 manual digit epithelium - + - + EHDAA2 @@ -388109,7 +388097,7 @@ - + An epithelium that is part of a forelimb stylopod [Automatically generated definition]. EHDAA2:0002113 EMAPA:17425 @@ -388118,14 +388106,14 @@ UBERON:0005228 upper arm epithelium - + - + EHDAA2 @@ -388158,7 +388146,7 @@ - + An epithelium that is part of a lower leg [Automatically generated definition]. EHDAA2:0001031 EMAPA:17497 @@ -388167,14 +388155,14 @@ UBERON:0005229 lower leg epithelium - + - + EHDAA2 @@ -388981,7 +388969,7 @@ - + @@ -389003,14 +388991,14 @@ UBERON:0005252 lesser sac cavity - + - + EHDAA2 @@ -389080,7 +389068,7 @@ - + Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells. Mesoderm that will give rise, along with cranial neural crest cells, to connective tissue, bone and musculature in the head. (Source: BioGlossary, www.Biology-Text.com)[TAO] EFO:0003492 @@ -389102,14 +389090,14 @@ head mesenchyme - + - + EHDAA2 @@ -389211,7 +389199,7 @@ - + Mesenchyme that is part of a developing toe [Automatically generated definition]. EMAPA:32947 VHOG:0000463 @@ -389224,14 +389212,14 @@ UBERON:0005255 pedal digit mesenchyme - + - + EHDAA2 @@ -389295,7 +389283,7 @@ - + Mesenchyme that is part of a developing trunk. EFO:0003485 EHDAA2:0002092 @@ -389311,14 +389299,14 @@ trunk mesenchyme - + - + EHDAA2 @@ -389712,7 +389700,7 @@ - + @@ -389736,14 +389724,14 @@ renal cortex artery - + - + MA @@ -389789,7 +389777,7 @@ - + @@ -389812,14 +389800,14 @@ renal cortex vein - + - + MA @@ -389850,13 +389838,13 @@ - + - - + + @@ -389882,24 +389870,24 @@ UBERON:0005270 renal cortex interstitium - + - + - + MA - + MA @@ -389933,7 +389921,7 @@ - + The part of the renal cortex nearest to the medulla. EMAPA:37623 @@ -389948,14 +389936,14 @@ juxtamedullary cortex - + - + FMA KUPO @@ -390002,7 +389990,7 @@ - + The tiny blood vessels that receive blood from the efferent arterioles of the glomerulus, and interact with superficial cortical nephrons allowing reabsorption and secretion between blood and the inner lumen of the nephron; peritubular capillaries are situated around the tubule and are at low pressure. EMAPA:36558 @@ -390014,14 +390002,14 @@ peritubular capillary - + - + Wikipedia @@ -390081,21 +390069,21 @@ - + EMAPA:37509 MA:0002709 uberon UBERON:0005274 proximal nail bed - + - + MA @@ -390455,7 +390443,7 @@ - + @@ -390484,14 +390472,14 @@ tela choroidea - + - + FMA @@ -390861,7 +390849,7 @@ - + The posterior part of the developing vertebrate hindbrain or the corresponding part of the adult brain composed of the medulla oblongata and a portion of the fourth ventricle; as well as the glossopharyngeal nerve (CN IX), vagus nerve (CN X), accessory nerve (CN XI), hypoglossal nerve (CN XII), and a portion of the vestibulocochlear nerve (CN VIII).[BTO,WP]. The posterior of the two brain vesicles formed by specialization of the rhombencephalon in the developing embryo, it comprises the medulla oblongata. [TFD][VHOG] @@ -390886,14 +390874,14 @@ myelencephalon http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg - + - + definitional @@ -391306,7 +391294,7 @@ - + The testis cords are precursors to the rete testis. They play several different roles in the development of the male genitals[WP]. TODO - check primary vs testis EHDAA2:0002011 @@ -391323,14 +391311,14 @@ testis sex cord - + - + Bgee:AN @@ -391732,8 +391720,8 @@ - - + + @@ -391762,24 +391750,24 @@ submucous nerve plexus - + - + - + FMA-modified - + FMA-modified @@ -392079,13 +392067,13 @@ - + - + The pronephric nephron tubule is an epithelial tube that is part of the pronephric nephron and connects the filtration unit (glomerulus or glomus) of the pronephros to the pronephric duct[GO]. Bilaterally paired tubes connecting the pronephric glomeruli to the pronephric ducts. In zebrafish and other teleosts, the pronephric nephron and tubules form after the pronephric duct, connecting to the anterior-most tip of the pronephric ducts. Drummond, 2000.[TAO] @@ -392098,14 +392086,14 @@ UBERON:0005310 pronephric nephron tubule - + - + GO @@ -392148,8 +392136,8 @@ - - + + The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]. TODO develops_from in mouse, five pairs of symmetrically positioned mammary placodes (three thoracic and two inguinal) form at reproducible locations along the mammary line at E11.5; the individual pairs develop asynchronously and in a distinct order; pair 3 is first, followed by pair 4, then by pairs 1 and 5 (which develop together), and finally by pair 2; the orientation of placodal cells is not uniform, suggesting that placodes are formed by migration of cells from the mammary line; between E11.5 and E12.5, each mammary placode expands and invaginates into the underlying mesenchyme to form an early bulb-shaped mammary bud[MP] @@ -392159,11 +392147,11 @@ UBERON:0005311 mammary placode - + - + @@ -392176,13 +392164,13 @@ - + PMID:20484386 - + Stedmans @@ -392416,7 +392404,7 @@ - + The collecting duct is the final common path through which urine flows before entering the ureter and then emptying into the bladder[GO]. AAO:0010390 XAO:0000151 @@ -392424,14 +392412,14 @@ UBERON:0005319 mesonephric collecting duct - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -392537,7 +392525,7 @@ - + A nephron that is part of a mesonephros. The structure that is the basic functional unit of the kidney.[AAO] AAO:0010387 @@ -392549,14 +392537,14 @@ UBERON:0005322 mesonephric nephron - + - + XAO @@ -392640,20 +392628,20 @@ - + The mesonephric macula densa is an area of specialized cells in the distal tubule of the mesonephros that makes contact with the vascular pole of the glomerulus[GO]. uberon UBERON:0005324 mesonephric macula densa - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -392756,20 +392744,20 @@ - + The mesonephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the mesonephric glomerulus[GO]. uberon UBERON:0005326 mesonephric glomerulus vasculature - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -392798,20 +392786,20 @@ - + A mesonephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the mesonephros[GO]. uberon UBERON:0005327 mesonephric glomerular epithelium - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -392902,20 +392890,20 @@ - + The mesonephric nephron epithelium is a tissue that covers the surface of a nephron in the mesonephros[GO]. uberon UBERON:0005330 mesonephric nephron epithelium - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -392944,7 +392932,7 @@ - + @@ -392959,14 +392947,14 @@ UBERON:0005331 mesonephric renal vesicle - + - + ZFA @@ -393128,7 +393116,7 @@ - + The chorioallantoic membrane is a vascular membrane found in eggs of some amniotes, such as birds and reptiles. It is formed by the fusion of the mesodermal layers of two developmental structures: the allantois and the chorion. Three different layers compose the chorioallantoic membrane; these are called the chorionic epithelium, the mesenchyme and the allantoic epithelium. Blood capillaries and sinuses are found between epithelial cells of the chorionic layer, allowing close contact (within 0.2 N<m) with air found in pores of the shell membrane of the egg. As a result, the chorioallantoic membrane allows exchange of gases, such as oxygen, to developing embryos. During embryonic development of birds, the chorioallantoic membrane also plays an essential role in bone formation by transporting calcium into the embryo from the eggshell. Chorioalloantoic membranes from developing chicken eggs are routinely used in biological and biomedical research to investigate development, angiogenesis, tumors, and to propagate and investigate viruses or helminths. respiratory membrane @@ -393143,14 +393131,14 @@ chorioallantoic membrane https://upload.wikimedia.org/wikipedia/commons/f/f8/Smallpox_CAM.png - + - + Hymans @@ -393199,7 +393187,7 @@ - + @@ -393223,14 +393211,14 @@ capillary layer of choroid - + - + overlaps via basement membrane. consider also adjacency Wikipedia:Bruch's_membrane @@ -393503,7 +393491,7 @@ - + The outer neural tube region in which post-mitotic neuroblasts migrate along radial glia to form the adult cortical layers[MP]. A single stem cell in the ventricular layer can give rise to neurons (and glial cells) in any of the cortical layers (Walsh and Cepko 1988)[NCBIBook:NBK10047] in humans develops into cortical layers II-VI @@ -393525,14 +393513,14 @@ cortical plate - + - + NCBIBook:NBK10047 @@ -394716,8 +394704,8 @@ - - + + A pouch of ectoderm that grows out from the upper surface of the embryonic stomodeum and gives rise to the anterior and intermediate lobes of the pituitary gland[MP]. In embryogenesis, Rathke's pouch is a depression in the roof of the developing mouth in front of the buccopharyngeal membrane. It gives rise to the anterior pituitary (adenohypophysis), a part of the endocrine system[WP]. A depression that forms in the roof of the mouth of an embryo, anterior to the buccopharyngeal membrane. The walls of the diverticulum develop into the anterior lobe of the pituitary gland. [TFD][VHOG] @@ -394756,11 +394744,11 @@ Rathke's pouch - + - + @@ -394773,13 +394761,13 @@ - + MP - + NCBIBook:NBK53175 @@ -395469,8 +395457,8 @@ - - + + The large group of sensory neuron cell bodies, anterior to the jugular vein, associated with the vagus nerve (tenth cranial nerve). These (the epibranchial placodes) are focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches in all vertebrates, and they produce the neuroblasts which migrate and condense to form the distal cranial ganglia: the geniculate, petrosal and nodose ganglia. (...) The one substantial difference between the vertebrate pharyngeal arches and those of the protochordates is the presence of the epibranchial placodes but the evolution of these structures was undoubtedly driven by the endoderm.[well established][VHOG] @@ -395504,24 +395492,24 @@ inferior vagus X ganglion - + - + - + EHDAA2 - + EHDAA2 @@ -396177,7 +396165,7 @@ - + @@ -396209,14 +396197,14 @@ spinal cord dorsal column - + - + Wikipedia @@ -396274,7 +396262,7 @@ - + @@ -396296,14 +396284,14 @@ spinal cord lateral column - + - + checkme @@ -396741,7 +396729,7 @@ - + @@ -396783,14 +396771,14 @@ UBERON:0005382 dorsal striatum - + - + NIFSTD @@ -396878,7 +396866,7 @@ - + @@ -396932,14 +396920,14 @@ caudate-putamen - + - + MA @@ -397268,7 +397256,7 @@ - + One of the small globular masses of dense neuropil in the olfactory bulb, containing the first synapse in the olfactory pathway[BTO]. Multi-tissue structure part of the olfactory bulb that is roughly spheroidal and encircled by olfactory sensory neuron axons that formed an anatomically distinct stalk connected to the olfactory nerve[ZFA]. UBERON:0011916 @@ -397283,14 +397271,14 @@ UBERON:0005387 olfactory glomerulus - + - + ZFA @@ -397424,7 +397412,7 @@ - + The most superficial layer of the neocortex characterized by a paucity of cell bodies. ABA:CTX1 BTO:0004906 @@ -397454,14 +397442,14 @@ UBERON:0005390 cortical layer I - + - + NBK10047 @@ -397564,7 +397552,7 @@ - + Layer of neocortex lying just deep to molecular layer characterized by numerous small cell bodies. ABA:CTX2 EMAPA:35256 @@ -397593,14 +397581,14 @@ UBERON:0005391 cortical layer II - + - + BRAINSPAN @@ -397690,7 +397678,7 @@ - + Layer of neocortex lying deep to the external granule cell layer defined cytoarchitecturally by numerous small pyramidal neurons. ABA:CTX3 EMAPA:35257 @@ -397721,14 +397709,14 @@ UBERON:0005392 cortical layer III - + - + BRAINSPAN @@ -397849,7 +397837,7 @@ - + Layer of neocortex lying deep to the external pyramidal cell layer defined cytoarchitecturally by the presence of numerous small cells. ... Relatively undeveloped in some mammals such as the tenrec. @@ -397879,14 +397867,14 @@ UBERON:0005393 cortical layer IV - + - + BRAINSPAN @@ -398006,7 +397994,7 @@ - + Layer of neocortex lying deep to the internal granule cell layer (layer 4) defined cytoarchitecturally by the predominance of large pyramidal cell bodies. ABA:CTX5 EMAPA:35259 @@ -398042,14 +398030,14 @@ UBERON:0005394 cortical layer V - + - + BRAINSPAN @@ -398726,14 +398714,14 @@ - + - + @@ -398761,11 +398749,11 @@ philtrum https://github.com/obophenotype/uberon/pull/2691 - + - + @@ -398778,13 +398766,13 @@ - + EMAPA - + Wikipedia @@ -398826,7 +398814,7 @@ - + @@ -398858,14 +398846,14 @@ ventral striatum - + - + MA @@ -399398,7 +399386,7 @@ - + An otic capsule endochondral element that is composed primarily of cartilage tissue. Bilaterally paired cartilage encasing the semicircular canals of the inner ear.[TAO] relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: develops_from neurocranium (UBERON:0001703)[TAO] @@ -399418,14 +399406,14 @@ cartilaginous otic capsule - + - + EHDAA2 @@ -399491,7 +399479,7 @@ - + @@ -399508,14 +399496,14 @@ bony otic capsule - + - + EHDAA2 @@ -399538,8 +399526,8 @@ - - + + Groove that is in the developing ventral optic cup and through which blood vessels pass to the enclosed mesenchyme[ZFA]. a ventral fissure in the developing optic cup through which blood vessels pass to the enclosed mesenchyme[Free online medical dictionary]. A break in the continuity of the optic cup where the two sides of the cup meet.[AAO] @@ -399569,11 +399557,11 @@ optic fissure http://upload.wikimedia.org/wikipedia/commons/9/98/Gray865.png - + - + @@ -399586,13 +399574,13 @@ - + EHDAA2 - + cjm @@ -400252,7 +400240,7 @@ - + An apical ectodermal ridge that is part of a pectoral appendage bud. An ectodermal thickening at the end of the forelimb bud in the developing embryo. [TFD][VHOG] Apical ectodermal ridge that is part of the pectoral fin bud.[TAO] @@ -400279,14 +400267,14 @@ pectoral appendage apical ectodermal ridge - + - + EHDAA2 @@ -400403,7 +400391,7 @@ - + An apical ectodermal ridge that is part of a pelvic appendage bud. An ectodermal thickening at the end of the hindlimb bud in the developing embryo. [TFD][VHOG] Apical ectodermal ridge that is part of the pelvic fin bud.[TAO] @@ -400426,14 +400414,14 @@ pelvic appendage apical ectodermal ridge - + - + EHDAA2 @@ -400870,7 +400858,7 @@ - + Portion of tissue that is part of the eye and gives rise to the mature, fully layered cornea. TAO:0002188 ZFA:0001688 @@ -400878,7 +400866,7 @@ UBERON:0005427 corneal primordium - + @@ -400897,7 +400885,7 @@ - + ZFA @@ -400989,7 +400977,7 @@ - + A pancreatic duct that develops from the dorsal pancreatic bud. These data show that ducts within the zebrafish pancreas originally arise in situ from isolated progenitor cells rather than arising from reiterative branching of the pancreatic epithelium. This process of pancreatic duct formation in zebrafish may be analogous to the mechanism of duct formation in the mammalian mammary and salivary glands. (...) A related mechanism of duct formation has also been proposed to occur within the mammalian pancreatic epithelium.[uncertain][VHOG] @@ -401018,7 +401006,7 @@ dorsal pancreatic duct http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1100.png - + @@ -401031,7 +401019,7 @@ - + EHDAA2 @@ -401113,7 +401101,7 @@ - + A loop of nerves that are part of the cervical plexus that lies superficial to the internal jugular vein in the carotid sheath. Branches from the ansa cervicalis innervate three of the four infrahyoid muscles, including the sternohyoid muscle, the sternothyroid muscle, and the omohyoid muscle. BAMS:ancer EHDAA2:0000124 @@ -401128,14 +401116,14 @@ ansa cervicalis http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray795.png - + - + EHDAA2 @@ -401166,7 +401154,7 @@ - + A blood vessel that supplies the anterior portion of the spinal cord. It arises from branches of the vertebral arteries and is supplied by the anterior segmental medullary arteries, including the artery of Adamkiewicz, and courses along the anterior aspect of the spinal cord. @@ -401189,14 +401177,14 @@ anterior spinal artery http://upload.wikimedia.org/wikipedia/commons/7/73/Anterior_spinal_cord_-_very_low_mag.jpg - + - + EHDAA2 @@ -401263,7 +401251,7 @@ - + The dilated structure that is lined by endothelial cells and located at the arterial pole of the heart just above (distal to) the truncus arteriosus in mammalian embryos; it is the primordial vascular channel from which the aortic arches (and eventually the dorsal aortae) arise; the aortic sac is homologous to the ventral aorta of gill-bearing vertebrates. the merged ventral aortae of the embryo which supplies blood to the aortic arches[TMD][http://medical-dictionary.thefreedictionary.com/aortic+sac]. EHDAA2:0004145 @@ -401278,7 +401266,7 @@ aortic sac - + @@ -401291,7 +401279,7 @@ - + EHDAA2 @@ -401759,7 +401747,7 @@ - + @@ -401778,7 +401766,7 @@ - + A fetal blood vessel connecting the pulmonary artery with the descending aorta[MESH]. In the developing fetus, the ductus arteriosus is a shunt connecting the pulmonary artery to the aortic arch. It allows most of the blood from the right ventricle to bypass the fetus' fluid-filled lungs, protecting the lungs from being overworked and allowing the left ventricle to strengthen. There are two other fetal shunts, the ductus venosus and the foramen ovale[MP]. the fetal vessel that connects the left pulmonary artery with the descending aorta; the ductus arteriosus normally regresses into a fibrous cord, the ligamentum arteriousum after birth[MP]. The temporary channel or blood vessel between the aorta and pulmonary artery in the fetus. [TFD][VHOG] On the other hand, in the sister clade of the actinopterygians, the sarcopterygians, the gill circulation is supplemented with lung ventilation. As a result, the pulmonary artery and vein and a functional ductus arteriosus arose as a major evolutionary innovation from the sixth arch, giving the organism a flexible shunt to balance blood supply to and from gills and lungs according to environmental conditions.[well established][VHOG] @@ -401811,24 +401799,24 @@ ductus arteriosus http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png - + - + - + EHDAA2 - + left branch embryology.ch @@ -401927,7 +401915,7 @@ - + An intercostal muscle that aids in quiet and forced inhalation via elevation of the ribs, and expanding the transverse dimensions of the thoracic cavity. Behind the thorax, the lateral group (of muscles in reptiles and mammals) remains essentially as for amphibians. (It breaks into three sheet-like layers: external oblique muscle, the internal oblique, and the transversus). More anteriorly, however, the ribs, now enlarged, penetrate and alter this group of muscles. The transversus is excluded from the thorax and the external and internal obliques become, respectively, the external and internal intercostal muscles, which contribute to the new function of ventilation of the lungs.[well established][VHOG] @@ -401959,7 +401947,7 @@ external intercostal muscle http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png - + @@ -401972,7 +401960,7 @@ - + EHDAA2 @@ -402093,15 +402081,15 @@ - + - - + + The lateral abdominal wall muscle that is the most superficial, immediately superficial to the internal oblique. Behind the thorax, the lateral group (of muscles in reptiles and mammals) remains essentially as for amphibians. (It breaks into three sheet-like layers: external oblique muscle, the internal oblique, and the transversus). More anteriorly, however, the ribs, now enlarged, penetrate and alter this group of muscles. The transversus is excluded from the thorax and the external and internal obliques become, respectively, the external and internal intercostal muscles, which contribute to the new function of ventilation of the lungs.[well established][VHOG] @@ -402139,35 +402127,35 @@ abdominal external oblique muscle http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg - + - + - + - + lower 6 intercostal nerve + subcostal nerve dbpedia - + dbpedia - + EHDAA2 @@ -402587,9 +402575,9 @@ - - - + + + @@ -402624,34 +402612,34 @@ greater omentum http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray1035.png - + - + - + - + OG - + Wikipedia - + Wikipedia @@ -402808,7 +402796,7 @@ - + @@ -402828,14 +402816,14 @@ UBERON:0005450 greater sac cavity - + - + EHDAA2 @@ -402968,7 +402956,7 @@ - + A three-dimensional arrangement formed by plates of hepatocytes, usually one cell thick, that radiates from the center of the liver lobule; hepatic laminae are highly branched, irregular structures bordered by endothelial lined vascular spaces called hepatic sinusoids. EMAPA:37880 @@ -402984,14 +402972,14 @@ hepatic cord - + - + FMA @@ -403129,9 +403117,9 @@ - - - + + + The lateral abdominal wall muscle that is deep to the external oblique and superficial to the transversus. Behind the thorax, the lateral group (of muscles in reptiles and mammals) remains essentially as for amphibians. (It breaks into three sheet-like layers: external oblique muscle, the internal oblique, and the transversus). More anteriorly, however, the ribs, now enlarged, penetrate and alter this group of muscles. The transversus is excluded from the thorax and the external and internal obliques become, respectively, the external and internal intercostal muscles, which contribute to the new function of ventilation of the lungs.[well established][VHOG] EHDAA2:0000879 @@ -403166,36 +403154,36 @@ abdominal internal oblique muscle http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg - + - + - + - + Inguinal ligament Iliac crest and the Lumbodorsal fascia. dbpedia - + Linea alba Xiphoid process and the inferior ribs. dbpedia - + Linea alba Xiphoid process and the inferior ribs. dbpedia @@ -403552,8 +403540,8 @@ - - + + EHDAA2:0000966 EMAPA:16544 FMA:18822 @@ -403563,25 +403551,25 @@ UBERON:0005458 left umbilical artery - + - + - + check this EHDAA2 - + check this EHDAA2 @@ -403700,18 +403688,18 @@ - - - - + + + + - - + + An axial muscle that originates in the cervical vertebraae inserts on the scapula. AAO:0010689 @@ -403733,66 +403721,66 @@ levator scapulae muscle https://upload.wikimedia.org/wikipedia/commons/b/bc/Levator_scapulae.png - + - + - + - + - + - + - + EHDAA2 - + Kardong - + cervical nerve and dorsal scapular nerve dbpedia - + EHDAA2 - + Posterior tubercles of transverse processes of C1 - C4 vertebrae dbpedia - + Superior part of medial border of scapula dbpedia @@ -403846,7 +403834,7 @@ - + Subdivision of abdominal segment of trunk which in humans is demarcated from the front of the abdomen by the posterior surface of the anterior layer of the thoracolumbar fascia and the anterior surface of the lumbar vertebral column; together with the front of the abdomen, it constitutes the abdomen[Modified from FMA]. lumbar lumbar region @@ -403873,14 +403861,14 @@ overlaps with region sometimes called 'loin' lower back - + - + MA @@ -404237,9 +404225,9 @@ - - - + + + The platysma is a pharyngeal arch 2 muscle and a superficial facial muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical branch of the facial nerve. It attaches to the mandible and it attaches to the skin of the head, neck, and thoracic region where it is found superficial to the clavicle. Burrows et al. (2011) argue that in hylobatids (and, presumably, other primates) the platysma in the region of the modiolus represents both the cervicale and myoides muscles. The platysma is a pharyngeal arch 2 muscle and a superficial facial muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical branch of the facial nerve, and attaches to the skin.[FEED] @@ -404268,15 +404256,15 @@ https://github.com/obophenotype/uberon/issues/472 http://upload.wikimedia.org/wikipedia/commons/f/fb/Platysma.png - + - + - + @@ -404289,21 +404277,21 @@ - + cervical branch of the facial nerve dbpedia - + base of mandible; skin of cheek and lower lip; angle of mouth; orbicularis oris dbpedia - + base of mandible; skin of cheek and lower lip; angle of mouth; orbicularis oris dbpedia @@ -404425,8 +404413,8 @@ - - + + EHDAA2:0001760 EMAPA:16545 FMA:18821 @@ -404436,25 +404424,25 @@ UBERON:0005470 right umbilical artery - + - + - + check this EHDAA2 - + check this EHDAA2 @@ -404673,7 +404661,7 @@ - + A portion of the lateral venous sinus, bulging prominently into the mastoid cavity, that serves as a principal conduit by which blood leaves the cranium[EPIC]. The sigmoid is drained by the internal jugular vein. The sigmoid sinuses, within a human head, are 2 areas beneath the brain, which allow blood veins to span the area, from the center of the head downward. They drain from the transverse sinuses (under the back of the brain) to the internal jugular vein. Each sigmoid sinus begins beneath the temporal bone and follows a tortuous course to the jugular foramen, at which point the sinus becomes continuous with the internal jugular vein[Wikipedia:Sigmoid_sinus]. @@ -404692,7 +404680,7 @@ sigmoid sinus https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif - + @@ -404705,7 +404693,7 @@ - + Palaeos @@ -404855,7 +404843,7 @@ - + A longitudinal groove in the neural tube wall that divides the neural tube into dorsal (alar) and ventral (basal) halves (dorsal receives input from sensory neurons, ventral effects motor functions); stretches from the mesencephalon caudad[TMD]. sulcus limitans @@ -404867,14 +404855,14 @@ UBERON:0005478 sulcus limitans of neural tube - + - + EHDAA2 @@ -405149,7 +405137,7 @@ - + Either of the two lateral lobes that constitute the thymus. each lobe of the thymus can be divided into a central medulla and a peripheral cortex which is surrounded by an outer capsule. Each lobe is composed of numerous lobules held together by delicate areolar tissue; the entire organ being enclosed in an investing capsule of a similar but denser structure. The primary lobules vary in size from that of a pin's head to that of a small pea, and are made up of a number of small nodules or follicles.[WP] @@ -405163,14 +405151,14 @@ thymus lobe - + - + FMA-abduced-lr @@ -405390,7 +405378,7 @@ - + @@ -405426,14 +405414,14 @@ venous dural sinus https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif - + - + FMA @@ -405846,7 +405834,7 @@ - + A blood vessel that is associated with the lens. In mammals, this is transient and normally nourishes the retina, immature lens and primary vitreous of the developing eye. we are currently conflating vessel and vasculature - we may wish to split this class - see also vascular plexus term. The ZFA class represents the vasculature EHDAA:4735 @@ -405864,14 +405852,14 @@ hyaloid vessel - + - + ZFA-modified @@ -405921,14 +405909,14 @@ - + - + One of a group of muscles used in mastication and swallowing. These muscles are attached to the hyoid bone, which is suspended in the neck and forms the base of the tongue and larynx. The muscles are divided into suprahyoid (superior) or infrahyoid (inferior) groups relative to the bone[WP, generalized]. Although the zebrafish occupies a rather derived phylogenetic position within actinopterygians and even within teleosts, with respect to the mandibular, hyoid and hypobranchial muscles it seems justified to consider it an appropriate representative of these two groups. Among these muscles, the three with clear homologues in tetrapods and the further three identified in sarcopterygian fish are particularly appropriate for comparisons of results between the actinopterygian zebrafish and the sarcopterygians.[well established][VHOG] attachment sites may vary by species; for example, in orangutans, the posterior digastric does not attach to the hyoid, but we may still consider this a (supra)hyoid muscle. @@ -405948,24 +405936,24 @@ hyoid muscle - + - + - + EHDAA2 - + EHDAA2 @@ -406209,7 +406197,7 @@ - + Multi-tissue structure that arises from the heart rudiment and will become the heart tube. BTO:0006179 EHDAA2:0001512 @@ -406228,14 +406216,14 @@ primitive heart tube - + - + ZFA @@ -406271,7 +406259,7 @@ - + Hindbrain segment or neuromere 1. Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] 1 @@ -406291,14 +406279,14 @@ rhombomere 1 - + - + definitional @@ -406517,7 +406505,7 @@ - + The third transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order. Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] 3 @@ -406538,14 +406526,14 @@ rhombomere 3 - + - + definitional @@ -406580,7 +406568,7 @@ - + The fourth transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order. Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] 4 @@ -406601,14 +406589,14 @@ rhombomere 4 - + - + definitional @@ -406643,7 +406631,7 @@ - + The fifth transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order. Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] 5 @@ -406664,14 +406652,14 @@ rhombomere 5 - + - + definitional @@ -406706,7 +406694,7 @@ - + The sixth transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order. Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] 6 @@ -406727,14 +406715,14 @@ rhombomere 6 - + - + definitional @@ -406769,7 +406757,7 @@ - + The seventh transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order. Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] 7 @@ -406789,14 +406777,14 @@ rhombomere 7 - + - + definitional @@ -406831,7 +406819,7 @@ - + The eighth transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order. Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] 8 @@ -406850,14 +406838,14 @@ rhombomere 8 - + - + definitional @@ -406941,9 +406929,9 @@ - - - + + + A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production[ZFA]. [PMID]. we follow Kardong table 13.1 in having some developmental contribution of pouch 4 in mammals, but this isn't reflected in EHDAA2. Consider adding distinct term for mesenchyme (see EHDAA2), to indicate NC constribution. A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production. Willett et al, 1999.[TAO] @@ -406962,34 +406950,34 @@ thymus primordium - + - + - + - + ZFA - + EHDAA2 - + mesenchymal ZFA https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -407042,7 +407030,7 @@ - + Cranial neural crest which gives rise to the trigeminal ganglion. todo - compare ZFA and EHDAA2 representation We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...).[well established][VHOG] @@ -407059,7 +407047,7 @@ trigeminal neural crest - + @@ -407078,7 +407066,7 @@ - + EHDAA2 @@ -407104,7 +407092,7 @@ - + @@ -407133,7 +407121,7 @@ gonad primordium - + @@ -407146,7 +407134,7 @@ - + ZFA @@ -407203,7 +407191,7 @@ - + Cranial neural crest that gives rise to the facio-acoustic ganglion. We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...).[well established][VHOG] EHDAA2:0000492 @@ -407218,7 +407206,7 @@ facio-acoustic neural crest - + @@ -407231,7 +407219,7 @@ - + EHDAA2 @@ -407397,7 +407385,7 @@ - + The second transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order. Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] 3 @@ -407418,14 +407406,14 @@ rhombomere 2 - + - + definitional @@ -408613,15 +408601,15 @@ - + - - + + Somite located in the head region, caudal to the otic vesicle. in humans this includes somites 1-4 They provide the epaxial and hypaxial muscles of the neck, the pharyngeal and laryngeal muscles that develop in the caudal branchial arches and the musculature of the tongue. Despite their localisation in the head, myogenic precursors from occipital somites essentially follow the trunk programmes (E. H. Walters and S. D., unpublished). during evolution, have been secondarily incorporated into the head (Gans and Northcutt, 1983) @@ -408635,24 +408623,24 @@ UBERON:0005594 head somite - + - + - + EHDAA2 - + EHDAA2 @@ -408699,7 +408687,7 @@ - + @@ -408719,7 +408707,7 @@ lung primordium - + @@ -408732,7 +408720,7 @@ - + XAO @@ -408922,8 +408910,8 @@ - - + + The portion of mesentery attached to the greater curvature of the stomach is named the dorsal mesentery (or dorsal mesogastrium, when referring to the portion at the stomach), and the part which suspends the colon is termed the mesocolon. The dorsal mesogastrium develops into the greater omentum. The dorsal sheet of the primitive mesentery that encloses the stomach. The greater omentum develops from the dorsal mesogastrium. [TFD][VHOG] EHDAA2:0000416 @@ -408939,11 +408927,11 @@ UBERON:0005602 dorsal mesogastrium - + - + @@ -408956,13 +408944,13 @@ - + EHDAA2 - + EHDAA2 @@ -409010,8 +408998,8 @@ - - + + EMAPA:16844 MA:0001636 VHOG:0000215 @@ -409021,24 +409009,24 @@ UBERON:0005604 extrahepatic part of hepatic duct - + - + - + MA - + MA @@ -409060,8 +409048,8 @@ - - + + EMAPA:16845 MA:0001637 VHOG:0000216 @@ -409071,24 +409059,24 @@ UBERON:0005605 intrahepatic part of hepatic duct - + - + - + MA - + MA @@ -409145,7 +409133,7 @@ - + @@ -409164,14 +409152,14 @@ UBERON:0005607 hyaloid vascular plexus - + - + EHDAA2 @@ -409187,7 +409175,7 @@ - + The second arch becomes the hyoid artery, which is prominent in early development and normally persists as the caroticotympanic branch of the ICA[Padget]. EHDAA:3342 @@ -409201,14 +409189,14 @@ hyoid artery - + - + http://www.ajnr.org/cgi/content/full/21/3/572 @@ -409424,7 +409412,7 @@ - + @@ -409444,14 +409432,14 @@ UBERON:0005612 intercostal artery - + - + EHDAA2 @@ -409739,8 +409727,8 @@ - - + + The outgrowths of the embryonic maxillary prominences that come together during prenatal development to form the secondary palate. consider splitting into embryonic/fully formed The outgrowths of the embryonic maxillae that come together during prenatal development to form the secondary palate. [TFD][VHOG] @@ -409760,24 +409748,24 @@ secondary palatal shelf - + - + - + EHDAA2 - + cjm @@ -409829,9 +409817,9 @@ - - - + + + The part of the palate formed from the intermaxillary segment. The shelf separating the oral and nasal cavities that is formed during early embryonic development from protrusions of tissue between the olfactory pits. [TFD][VHOG] Early tetrapod possessed a primary palate that included the vomer, pterygoid, parasphenoid, palatine and ectopterygoid bones. Therapsid evolved a partial secondary palate formed by the medial extension of the premaxilla and maxilla. Mammals have a secondary palate that, in addition to extensions of the premaxilla and maxilla, includes part of the palatine bone[VHOG] @@ -409856,35 +409844,35 @@ primary palate - + - + - + - + consider reversing VHOG - + EHDAA2-abduced - + Wikipedia http://www.indiana.edu/~anat550/hnanim/face/face.html @@ -409961,11 +409949,11 @@ - - - - - + + + + + A rhombus-shaped muscle associated with the scapula and chiefly responsible for its retraction. There are two rhomboid muscles. TODO - add child terms EHDAA2:0001635 @@ -409985,56 +409973,56 @@ rhomboid http://upload.wikimedia.org/wikipedia/commons/a/aa/Rhomboidei.PNG - + - + - + - + - + - + EHDAA2 - + EHDAA2 - + nuchal ligaments spinous processes of the C7 to T5 vertebrae dbpedia - + nuchal ligaments spinous processes of the C7 to T5 vertebrae dbpedia - + dbpedia @@ -410233,8 +410221,8 @@ - - + + @@ -410251,24 +410239,24 @@ UBERON:0005625 tubotympanic recess lumen - + - + - + MA - + ISBN:0073040584 @@ -410290,7 +410278,7 @@ - + Portion of ventral mesentery closest to the stomach. The mesentery that originates from the ventral side of the peritoneal cavity.[TAO] The ventral sheet of the primitive mesentery that encloses the stomach. The lesser omentum develops from the ventral mesogastrium. [TFD][VHOG] @@ -410311,14 +410299,14 @@ ventral mesogastrium http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray984.png - + - + EHDAA2 @@ -411667,7 +411655,7 @@ - + An epithelium that is part of a primary palate. EHDAA2:0001500 EMAPA:17643 @@ -411677,14 +411665,14 @@ UBERON:0005659 primary palate epithelium - + - + EHDAA2 @@ -412065,13 +412053,13 @@ - + EHDAA2:0000314 uberon UBERON:0005667 connecting stalk mesoderm - + @@ -412084,7 +412072,7 @@ - + EHDAA2 @@ -412771,8 +412759,8 @@ - - + + An orbitosphenoid endochondral element that is composed primarily of cartilage tissue. EHDAA2:0001329 EHDAA:9554 @@ -412781,11 +412769,11 @@ UBERON:0005687 orbitosphenoid cartilage element - + - + @@ -412798,13 +412786,13 @@ - + EHDAA2 - + EHDAA2 @@ -413583,7 +413571,7 @@ - + An odontogenic papilla that is part of a upper jaw molar. EHDAA2:0002127 EHDAA:8051 @@ -413594,14 +413582,14 @@ UBERON:0005700 upper jaw molar odontogenic papilla - + - + EHDAA2 @@ -413643,7 +413631,7 @@ - + An odontogenic papilla that is part of a lower jaw molar. EHDAA2:0001027 EHDAA:8015 @@ -413654,14 +413642,14 @@ UBERON:0005701 lower jaw molar odontogenic papilla - + - + EHDAA2 @@ -413798,8 +413786,8 @@ - - + + Mesenchyme that is part of a developing primary palate. EHDAA2:0001501 EHDAA:6968 @@ -413809,24 +413797,24 @@ UBERON:0005705 primary palate mesenchyme - + - + - + EHDAA2 - + EHDAA2 @@ -413875,7 +413863,7 @@ - + An odontogenic papilla that is part of a upper jaw incisor. EHDAA2:0002123 EMAPA:17941 @@ -413885,14 +413873,14 @@ UBERON:0005707 upper jaw incisor odontogenic papilla - + - + EHDAA2 @@ -413934,7 +413922,7 @@ - + An odontogenic papilla that is part of a lower jaw incisor. EHDAA2:0001023 EMAPA:17920 @@ -413944,14 +413932,14 @@ UBERON:0005708 lower jaw incisor odontogenic papilla - + - + EHDAA2 @@ -414211,7 +414199,7 @@ - + An apical ectodermal ridge that is part of a footplate. EHDAA2:0000547 EMAPA:17251 @@ -414219,14 +414207,14 @@ UBERON:0005719 footplate apical ectodermal ridge - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -414302,14 +414290,14 @@ - + - + A mesoderm that has the potential to develop into a pronephros. Portion of tissue that consists of the mesenchymal precursor to the pronephric kidney and that begins to separate from the intermediate mesoderm at NF stage 21 and epithelializes by NF stage 30.[AAO] AAO:0011090 @@ -414328,24 +414316,24 @@ the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney pronephric mesoderm - + - + - + ZFA - + Bgee:AN @@ -414742,7 +414730,7 @@ - + EHDAA2:0000474 EMAPA:31862 EMAPA:31863 @@ -414754,7 +414742,7 @@ UBERON:0005728 extraembryonic mesoderm - + @@ -414767,7 +414755,7 @@ - + EHDAA2 @@ -414941,7 +414929,7 @@ - + @@ -414957,14 +414945,14 @@ paired limb/fin field - + - + ISBN:9780878932504 ZFA-inferred @@ -415409,7 +415397,7 @@ - + @@ -415451,14 +415439,14 @@ optic foramen https://upload.wikimedia.org/wikipedia/commons/8/8e/Orbita_mensch.jpg - + - + FMA-abduced-lr @@ -415543,9 +415531,9 @@ - - - + + + Embryonic fibrovascular mesodermal tissue located between the optic cup and lens vesicle that normally regresses during the development of the vitreous body[MP]. Acellular in EHDAA2, MP defs says tissue EHDAA2:0001502 @@ -415558,15 +415546,15 @@ primary vitreous - + - + - + @@ -415580,19 +415568,19 @@ - + cjm - + EHDAA2 - + EHDAA2 @@ -415633,7 +415621,7 @@ - + @@ -415651,14 +415639,14 @@ glomerular tuft - + - + Wikipedia @@ -416019,8 +416007,8 @@ - - + + @@ -416049,24 +416037,24 @@ urorectal septum http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray992.png - + - + - + MA - + EHDAA2 @@ -416284,7 +416272,7 @@ - + @@ -416314,14 +416302,14 @@ glomerular basement membrane http://upload.wikimedia.org/wikipedia/commons/d/de/PhysiologieGlom%C3%A9rulaire.png - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -417015,7 +417003,7 @@ - + Control of blood pressure is crucially dependent on the integrity of a small region of the brainstem called the ventrolateral medulla. Within this part of the brain are the cells that control the heart, blood vessels, swallowing, breathing and many other functions of the body that are not noticed at a conscious level; such unconscious activities are known as 'Autonomic'. One of these regions is the Rostral Ventrolateral Medulla (RVLM) is also known as the pressor area of the medulla (medulla pressor). It receives inhibitory GABAergic input from the caudal ventrolateral medulla (CVLM). The RVLM is the primary regulator of the sympathetic nervous system, sending excitatory fibers (catecholaminergic) to the sympathetic preganglionic neurons in the spinal cord, via reticulospinal tract[WP]. BTO:0002778 Wikipedia:Rostral_ventrolateral_medulla @@ -417025,14 +417013,14 @@ UBERON:0005807 rostral ventrolateral medulla - + - + Wikipedia @@ -417685,7 +417673,7 @@ - + A group of axons that are from neurons involved in proprioception from the lower trunk and lower limb[GO]. The fasciculus gracilis (tract of Goll) is a bundle of axon fibres in the dorsomedial spinal cord that carries information about fine touch, vibrations, and conscious proprioception from the lower part of the body to the brain stem. It is part of the posterior column of the spinal cord, which also contains the fasciculus cuneatus, which carries the same information from the upper part of the body. This tract and its continuation in the brain stem is often referred to as the posterior column-medial lemniscus pathway. The fasciculus gracilis is wedge-shaped on transverse section and lies next the posterior median septum, its base being at the surface of the medulla spinalis, and its apex directed toward the posterior gray commissure. It increases in size from below upward, and consists of long thin fibers that are derived from the posterior nerve roots, and ascend as far as the medulla oblongata, where they end in the nucleus gracilis. The tract of Goll was named after Swiss neuroanatomist Friedrich Goll[WP]. distinction between axon tract and fasicle is unclear UBERON:0004168 @@ -417713,7 +417701,7 @@ gracile fasciculus http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg - + @@ -417726,7 +417714,7 @@ - + GO @@ -419060,7 +419048,7 @@ - + A delimited region of dense mesenchyme within looser mesenchyme. AEO:0000148 EHDAA2_RETIRED:0003148 @@ -419070,7 +419058,7 @@ UBERON:0005856 developing mesenchymal condensation - + @@ -419089,7 +419077,7 @@ - + AEO-modified-relation @@ -419111,7 +419099,7 @@ - + @@ -419132,7 +419120,7 @@ UBERON:0005863 cartilaginous condensation - + @@ -419145,7 +419133,7 @@ - + AEO @@ -419196,7 +419184,7 @@ - + @@ -419218,14 +419206,14 @@ UBERON:0005865 pre-muscle condensation - + - + AEO @@ -419236,7 +419224,7 @@ - + @@ -419256,7 +419244,7 @@ UBERON:0005866 pre-cartilage condensation - + @@ -419269,7 +419257,7 @@ - + AEO @@ -419492,15 +419480,15 @@ - + - - + + An indentation of the olfactory placode which ends when the pits hollows out to form the nasopharynx[GO]. we represent the relationship as develops from, though in fact the pit is formed as an indentation in the placode By the upgrowth of the surrounding parts the olfactory areas are converted into pits, the nasal pits or olfactory pits, which indent the fronto-nasal process and divide it into a medial and two lateral nasal processes[Wikipedia:Nasal_pit]. @@ -419521,15 +419509,15 @@ olfactory pit - + - + - + @@ -419542,19 +419530,19 @@ - + EMAPA - + EHDAA2 - + XAO:0000275 nasal pit @@ -420097,8 +420085,8 @@ - - + + @@ -420137,24 +420125,24 @@ undifferentiated genital tubercle http://upload.wikimedia.org/wikipedia/commons/d/d6/Gray1119.png - + - + - + EHDAA2 - + https://github.com/obophenotype/uberon/issues/1230 @@ -420528,8 +420516,8 @@ - - + + A subdivision of skeleton that supports pharyngeal arch 2. it's not clear where AAO:'hyobranchial skeleton' belongs AAO:0000665 @@ -420546,24 +420534,24 @@ UBERON:0005884 hyoid arch skeleton - + - + - + ZFA - + cjm @@ -420617,8 +420605,8 @@ - - + + The part of the pharyngeal arch skeleton that excludes the skeleton of arches 1 and 2. Skeletal and cartilage elements of the gill arches; the last five of the set of seven pharyngeal arches; the numbering system can be confusing; generally branchial arch #1 is the first gill arch, or the third pharyngeal arch, but some authors do not follow this convention. Kimmel et al, 1995.[TAO] @@ -420639,24 +420627,24 @@ UBERON:0005886 post-hyoid pharyngeal arch skeleton - + - + - + ZFA - + ZFA-modified @@ -420828,8 +420816,8 @@ - - + + The epithelial lining of the surface of the coelom. EHDAA2:0004049 used to be called 'coelomic epithelium' but is now 'gonadal ridge mesothelium' Wikipedia:Coelomic_epithelium @@ -420840,24 +420828,24 @@ UBERON:0005891 coelomic epithelium - + - + - + XAO - + XAO @@ -421535,9 +421523,9 @@ - - - + + + A serous sac which is the aggregate of the conjunctiva plus the conjunctival space. EMAPA:18233 FMA:20291 @@ -421548,15 +421536,15 @@ UBERON:0005908 conjunctival sac - + - + - + @@ -421569,19 +421557,19 @@ - + FMA - + HPO:pr - + MA @@ -421883,10 +421871,10 @@ - - - - + + + + A turbinal located on the maxilla bone. In many carnivores and ungulates, the maxilloturbinal is the most complex element immediately posterior to the vestibule[PMID:25312359] @@ -421912,19 +421900,19 @@ inferior nasal concha http://upload.wikimedia.org/wikipedia/commons/6/62/Gray192.png - + - + - + - + @@ -421937,25 +421925,25 @@ - + FMA-abduced-lr - + dbpedia - + dbpedia - + ISBN:1588903958 @@ -422634,7 +422622,7 @@ - + trabecula trabecular cartilage EFO:0003677 @@ -422646,7 +422634,7 @@ neurocranial trabecula - + @@ -422659,7 +422647,7 @@ - + ZFA @@ -422761,7 +422749,7 @@ - + Anteriosuperior, smooth-walled portion of the cavity of the right ventricle, beginning at the supraventricular crest and terminating in the pulmonary trunk. infundibulum EMAPA:37926 @@ -422784,14 +422772,14 @@ UBERON:0005953 outflow part of right ventricle - + - + PMID:17276708 @@ -423510,7 +423498,7 @@ - + A sheet of somatopleure that grows upward over the embryo and eventually meets in the midline enclosing the embryo, eventually giving rise to the amnion and chorion[Kardong]. EMAPA:16076 amnionic fold @@ -423519,14 +423507,14 @@ amniotic fold - + - + ISBN:0073040584 @@ -423727,7 +423715,7 @@ - + Missing definition for term UBERON:0005976. Please replace it using linked reference. synonym with hemispheric lobule VIIA based on FMA and NIFSTD BAMS:SSL @@ -423765,14 +423753,14 @@ ansiform lobule crus I - + - + HBA @@ -423944,7 +423932,7 @@ - + Missing definition for term UBERON:0005977. Please replace it using linked reference. TODO - check BAMS:ISL @@ -423981,14 +423969,14 @@ ansiform lobule crus II - + - + HBA @@ -424612,7 +424600,7 @@ - + @@ -424639,14 +424627,14 @@ left bundle branch - + - + https://github.com/obophenotype/uberon/issues/1785 https://orcid.org/0000-0001-5208-3432 https://orcid.org/0000-0002-9791-0064 @@ -424728,7 +424716,7 @@ - + @@ -424754,14 +424742,14 @@ right bundle branch - + - + https://github.com/obophenotype/uberon/issues/1785 https://orcid.org/0000-0001-5208-3432 https://orcid.org/0000-0002-9791-0064 @@ -424848,7 +424836,7 @@ - + @@ -424868,14 +424856,14 @@ atrium myocardial trabecula - + - + ZFA @@ -424927,7 +424915,7 @@ - + @@ -424951,14 +424939,14 @@ atrioventricular septum - + - + PMID:15797462 Wikipedia @@ -425302,7 +425290,7 @@ - + @@ -425326,14 +425314,14 @@ chorda tendineae http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png - + - + FMA-abduced @@ -425725,7 +425713,7 @@ - + The paired arteries that carry blood to the yolk sac from the dorsal aorta. EHDAA2:0002208 EMAPA:16207 @@ -425737,14 +425725,14 @@ vitelline artery http://upload.wikimedia.org/wikipedia/commons/5/55/Gray31.png - + - + ventral branch @@ -425840,8 +425828,8 @@ - - + + @@ -425865,24 +425853,24 @@ hair follicle matrix region - + - + - + FMA - + FMA @@ -426025,7 +426013,7 @@ - + @@ -426047,14 +426035,14 @@ the MP class implies this is part of both the medulla oblongata and the PSNS, which violates the spatial disjointness constraint. We weaken this to continuous_with here. pre-Botzinger complex - + - + Wikipedia @@ -426275,7 +426263,7 @@ - + A small transparent canal running through the vitreous body from the optical nerve disc to the lens. It is formed by an invagination of the hyaloid, a membrane which encloses the vitreous body[WP]. FMA:58837 SCTID:362506002 @@ -426289,14 +426277,14 @@ hyaloid canal http://upload.wikimedia.org/wikipedia/commons/e/eb/Gray869.png - + - + Wikipedia @@ -426340,7 +426328,7 @@ - + Vein internal to the eye. Isogai et al. 2001.[TAO] EHDAA2:0000791 TAO:0005047 @@ -426351,14 +426339,14 @@ UBERON:0006011 hyaloid vein - + - + EHDAA2 @@ -427688,7 +427676,7 @@ - + The falx cerebri, also known as the cerebral falx, so named from its sickle-like form, is a strong, arched fold of dura mater which descends vertically in the longitudinal fissure between the cerebral hemispheres. It is narrow in front, where it is attached to the crista galli of the ethmoid; and broad behind, where it is connected with the upper surface of the tentorium cerebelli. Its upper margin is convex, and attached to the inner surface of the skull in the middle line, as far back as the internal occipital protuberance; it contains the superior sagittal sinus. Its lower margin is free and concave, and contains the inferior sagittal sinus. The falx cerebri is known to calcify with age. EMAPA:18551 FMA:83967 @@ -427704,14 +427692,14 @@ falx cerebri http://upload.wikimedia.org/wikipedia/commons/f/ff/Falxcerebri.jpg - + - + definitional @@ -428279,7 +428267,7 @@ - + @@ -428310,14 +428298,14 @@ cervical region of vertebral column - + - + FMA @@ -428395,7 +428383,7 @@ - + @@ -428428,14 +428416,14 @@ thoracic region of vertebral column - + - + FMA @@ -428784,7 +428772,7 @@ - + @@ -428804,14 +428792,14 @@ subdivision of vertebral column - + - + FMA @@ -428968,8 +428956,8 @@ - - + + @@ -429004,24 +428992,24 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.2/assets/3d-vh-f-urinary-bladder.glb https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.2/assets/3d-vh-m-urinary-bladder.glb - + - + - + EHDAA2-modified - + EHDAA2 @@ -429088,7 +429076,7 @@ - + Region of cortex near to the rhinal sulcus. It is defined differently in different nomenclatures, due in part to the lack of agreement on the definition of the border of this region. In the rat, the perirhinal cortex occupies only caudal levels of the rhinal sulcus while in the monkey, it occurpies the full rostrocaudal extent of the rhinal sulcus (Burwell et al., Hippocampus, 5: 390-408, 1995). in MA classified as part of insular cortex, but this is contested by MM - https://support.crbs.ucsd.edu/browse/NIF-9830 @@ -429116,14 +429104,14 @@ perirhinal cortex - + - + NIFSTD @@ -429185,7 +429173,7 @@ - + @@ -429224,7 +429212,7 @@ UBERON:0006086 stria medullaris - + @@ -429237,7 +429225,7 @@ - + NIFSTD @@ -430021,7 +430009,7 @@ - + @@ -430049,14 +430037,14 @@ superior parietal cortex - + - + NIFSTD @@ -430845,7 +430833,7 @@ - + Missing definition for term UBERON:0006101. Please replace it using linked reference. B09-24 BAMS:ACA @@ -430873,7 +430861,7 @@ Brodmann (1909) area 24 https://github.com/obophenotype/uberon/issues/1161 - + @@ -430886,7 +430874,7 @@ - + https://orcid.org/0000-0003-3308-6245 @@ -431001,7 +430989,7 @@ - + Brodmann area 35, together with Brodmann area 36, is most frequently referred to as perirhinal cortex. Brodmann found a cytoarchitecturally homologous area in the monkey (Cercopithecus), but it was so weakly developed that he omitted it from the cortical map of that species (Brodmann-1909). B09-35 @@ -431025,7 +431013,7 @@ UBERON:0006102 Brodmann (1909) area 35 - + @@ -431038,7 +431026,7 @@ - + WP @@ -431128,7 +431116,7 @@ - + Ectorhinal area 36 is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. With its medial boundary corresponding approximately to the rhinal sulcus it is located primarily in the fusiform gyrus. Cytoarchitecturally it is bounded laterally and caudally by the inferior temporal area 20, medially by the perirhinal area 35 and rostrally by the temporopolar area 38 (H) (Brodmann-1909). Together with Brodmann area 35, it comprises the perirhinal cortex. B09-36 BIRNLEX:1769 @@ -431150,7 +431138,7 @@ UBERON:0006104 Brodmann (1909) area 36 - + @@ -431163,7 +431151,7 @@ - + WP @@ -431700,7 +431688,7 @@ - + Part of fornix adjacent to the fimbria comprising flattened bands of fibers that extend from the fimbria, running underneath the corpus callosum. BAMS:pfx @@ -431723,14 +431711,14 @@ UBERON:0006115 posterior column of fornix - + - + NIFSTD @@ -432539,7 +432527,7 @@ - + FMA:77610 NLXANAT:20090302 diagonal band subdivision @@ -432549,14 +432537,14 @@ subdivision of diagonal band - + - + NIFSTD @@ -433686,20 +433674,20 @@ - + The mesonephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the mesonephros, which helps to support the capillary loops in a renal glomerulus. uberon UBERON:0006182 mesonephric glomerular mesangium - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -433727,31 +433715,31 @@ - - + + Missing definition for term UBERON:0006183. Please replace it using linked reference. uberon UBERON:0006183 mesonephric glomerular capillary - + - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -434006,7 +433994,7 @@ - + Any vein serving the ear region. In humans this refers to either the anterior or posterior auricular vein, passing in front of or behind the ear. This class also groups other auricular veins, including the greater, ventral, central auricular nerves. These may exhibit different branching structures. In the pig, the external jugular branches to the maxillary to the caudal auricular to the middle auricular, then onto various unique patterns EMAPA:37136 @@ -434019,14 +434007,14 @@ UBERON:0006197 auricular vein - + - + cjm @@ -434192,8 +434180,8 @@ - - + + EMAPA:37472 FMA:71216 MA:0002091 @@ -434205,24 +434193,24 @@ classes unified on basis of spatial anatomy ontology synonyms caudal humeral circumflex vein - + - + - + FMA/obol - + FMA/obol @@ -434289,7 +434277,7 @@ - + concha FMA:61006 NCIT:C32362 @@ -434302,14 +434290,14 @@ conchal part of pinna - + - + http://php.med.unsw.edu.au @@ -434503,7 +434491,7 @@ - + @@ -434536,14 +434524,14 @@ aortico-pulmonary spiral septum http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray470.png - + - + PMID:6844926 Wikipedia @@ -434653,7 +434641,7 @@ - + @@ -434670,14 +434658,14 @@ basioccipital cartilage element - + - + EHDAA2 @@ -434720,7 +434708,7 @@ - + @@ -434764,14 +434752,14 @@ buccopharyngeal membrane http://upload.wikimedia.org/wikipedia/commons/9/93/Gray977.png - + - + EHDAA2 @@ -435009,7 +434997,7 @@ - + @@ -435039,14 +435027,14 @@ rhombic lip - + - + EHDAA2 Wikipedia @@ -435193,7 +435181,7 @@ - + @@ -435234,14 +435222,14 @@ cloacal membrane http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray991.png - + - + Wikipedia @@ -435313,8 +435301,8 @@ - - + + EHDAA2:0000340 EHDAA:6002 EMAPA:17749 @@ -435323,11 +435311,11 @@ deltoid pre-muscle mass - + - + @@ -435340,13 +435328,13 @@ - + EHDAA2 - + EHDAA2 @@ -435414,7 +435402,7 @@ - + @@ -435437,14 +435425,14 @@ future diencephalon - + - + EHDAA2 @@ -435577,9 +435565,9 @@ - - - + + + @@ -435596,34 +435584,34 @@ ethmoid bone primordium - + - + - + - + FMA - + AAO - + EHDAA2 @@ -435699,8 +435687,8 @@ - - + + EHDAA2:0000483 EHDAA:2925 EMAPA:17845 @@ -435709,24 +435697,24 @@ extrinsic ocular pre-muscle mass - + - + - + EHDAA2 - + EHDAA2 ISBN:0781772214 @@ -435770,7 +435758,7 @@ - + @@ -435786,14 +435774,14 @@ facio-acoustic VII-VIII preganglion complex - + - + EHDAA2 @@ -435820,7 +435808,7 @@ - + A differentiated genital tubercle that is part of a female reproductive system. EHDAA:8118 EMAPA:18680 @@ -435832,14 +435820,14 @@ female genital tubercle - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -436120,8 +436108,8 @@ - - + + @@ -436140,24 +436128,24 @@ future central tendon - + - + - + EHDAA2 - + mesenchyme cranial part Wikipedia @@ -436268,7 +436256,7 @@ - + @@ -436292,14 +436280,14 @@ future spinal cord - + - + EHDAA2 @@ -436345,8 +436333,8 @@ - - + + @@ -436364,24 +436352,24 @@ gallbladder primordium - + - + - + EMAPA - + EHDAA2 @@ -436467,8 +436455,8 @@ - - + + @@ -436486,24 +436474,24 @@ humerus cartilage element - + - + - + EHDAA2 - + EHDAA2 @@ -436539,7 +436527,7 @@ - + @@ -436557,14 +436545,14 @@ humerus pre-cartilage condensation - + - + EHDAA2 @@ -436600,7 +436588,7 @@ - + @@ -436617,14 +436605,14 @@ iliac pre-cartilage condensation - + - + EHDAA2 @@ -436652,7 +436640,7 @@ - + An incus endochondral element that is composed primarily of a pre-cartilage condensation. in EHDAA2 this develops from both mandibular and maxillary mesenchyme. We have still to extend homology relationships from quadrate/incus to their ontogenic precursors ( EHDAA2:0000813 @@ -436664,14 +436652,14 @@ incus pre-cartilage condensation - + - + EHDAA2-generalized @@ -436701,10 +436689,10 @@ - - - - + + + + A funnel-shaped diverticulum that extends downward from the anterior aspect of the floor of the third ventricle into the infundibulum of the hypophysis; the embryonic structure gives rise the neural component of the pituitary (pas nervosa). in FMA this is a cavity, whereas in EHDAA2 it is an epithelial sac BAMS:IRe @@ -436730,19 +436718,19 @@ infundibular recess of 3rd ventricle http://upload.wikimedia.org/wikipedia/commons/7/75/Gray654.png - + - + - + - + @@ -436755,25 +436743,25 @@ - + EMAPA - + EMAPA - + EHDAA2 - + EHDAA2 @@ -436992,7 +436980,7 @@ - + An ischial endochondral element that is composed primarily of cartilage tissue. EHDAA2:0000890 EHDAA:9570 @@ -437003,7 +436991,7 @@ ischial cartilage element - + @@ -437016,7 +437004,7 @@ - + EHDAA2 @@ -437121,8 +437109,8 @@ - - + + @@ -437155,11 +437143,11 @@ UBERON:0006257 laryngotracheal groove - + - + @@ -437172,13 +437160,13 @@ - + EHDAA2 - + EHDAA2 @@ -437301,7 +437289,7 @@ - + @@ -437320,7 +437308,7 @@ the collection consisting of the two lateral swellings and the medial swelling lingual swellings - + @@ -437333,7 +437321,7 @@ - + EHDAA2 @@ -437380,7 +437368,7 @@ - + A differentiated genital tubercle that is part of a male reproductive system. EHDAA:8138 EMAPA:17969 @@ -437393,14 +437381,14 @@ male genital tubercle - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -437441,7 +437429,7 @@ - + A malleus endochondral element that is composed primarily of a pre-cartilage condensation. EHDAA2:0001055 EHDAA:9026 @@ -437452,14 +437440,14 @@ malleus pre-cartilage condensation - + - + EHDAA2 @@ -437477,7 +437465,7 @@ - + @@ -437493,14 +437481,14 @@ Meckel's cartilage pre-cartilage condensation - + - + EHDAA2 @@ -437567,7 +437555,7 @@ - + @@ -437588,7 +437576,7 @@ mural trophectoderm - + @@ -437601,7 +437589,7 @@ - + EMAPA @@ -437644,8 +437632,8 @@ - - + + @@ -437676,11 +437664,11 @@ nasolacrimal groove http://upload.wikimedia.org/wikipedia/commons/3/3f/Gray163.png - + - + @@ -437693,13 +437681,13 @@ - + EHDAA2 - + EHDAA2 @@ -437738,7 +437726,7 @@ - + The notochordal plate is the dorsal part of the notochordal process when the ventral portion breaks down. It is continuous laterally with the endoderm that composes the roof of the primitive foregut and is in contact dorsally with the neural tube. The folding off of the notochordal plate gives rise to the notochord. TODO - check ordering; awaiting confirmation from JB The notochordal plate is the dorsal part of the notochordal process when the ventral portion breaks down. It is continuous laterally with the endoderm that composes the roof of the primitive foregut and is in contact dorsally with the neural tube. The folding off of the notochordal plate gives rise to the notochord. [Carson_JL, Dehart_DB, Developmental_Dynamics_(1994)_201:_260-278, Gesteland_K_and_Schoenwolf_GC, Inagaki_T, Morphogenesis_of_the_murine_node_and_notochordal_plate, The_prechordal_plate, Vrablic_T, see_Mueller_F_and_O'Rahilly_R, the_rostral_end_of_the_notochord_and_nearby_median_features_in_staged_human_embryos._Cells_Tissues_Organs_(2003)_173:_1-20_and_Sulik_K][VHOG] @@ -437753,7 +437741,7 @@ notochordal plate - + @@ -437766,7 +437754,7 @@ - + EHDAA2 @@ -437803,7 +437791,7 @@ - + A midline cellular cord formed from the migration of mesenchymal cells from the primitive knot. EHDAA2:0001279 EHDAA:224 @@ -437820,14 +437808,14 @@ The notochordal process grows cranially until it reaches the prechordal plate, the future site of the mouth. In this area the ectoderm is attached directly to the endoderm without intervening mesoderm. This area is known as the oropharyngeal membrane, and it will break down to become the mouth. At the other end of the primitive streak the ectoderm is also fused directly to the endoderm; this is known as the cloacal membrane (proctodeum), or primordial anus. notochordal process - + - + EHDAA2 @@ -438119,7 +438107,7 @@ - + @@ -438146,14 +438134,14 @@ pericardio-peritoneal canal - + - + EMAPA @@ -438246,14 +438234,14 @@ - + - + Each of the folds that grow out from the lateral part of the body wall. They fuse and meet with the dorsal and ventral mesentery of the foregut, separating the pleural cavities from the pericardial cavity. In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart [of other tetrapods] is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes) Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG] As the folds grow towards the midline, carrying the phrenic nerve, the root of the folds migrate ventrally @@ -438270,24 +438258,24 @@ pleuropericardial folds - + - + - + EHDAA2 - + EHDAA2 @@ -438348,7 +438336,7 @@ - + @@ -438380,7 +438368,7 @@ pleuroperitoneal canal - + @@ -438393,7 +438381,7 @@ - + EHDAA2 @@ -438426,8 +438414,8 @@ - - + + @@ -438449,11 +438437,11 @@ polar trophectoderm - + - + @@ -438466,13 +438454,13 @@ - + EMAPA - + EHDAA2 @@ -438535,7 +438523,7 @@ - + EHDAA2:0001498 EHDAA:818 EMAPA:16242 @@ -438545,14 +438533,14 @@ early vein that gives rise to various sinuses primary head vein - + - + EHDAA2 @@ -438562,8 +438550,8 @@ - - + + @@ -438594,24 +438582,24 @@ The embryonic ventricle or primitive ventricle of the developing heart gives rise to the trabeculated parts of the left and right ventricles. In contrast, the smooth parts of the left and right ventricles originate from the embryological bulbus cordis. The primitive ventricle becomes divided by a septum, the septum inferius or ventricular septum, which grows upward from the lower part of the ventricle, its position being indicated on the surface of the heart by a furrow. Its dorsal part increases more rapidly than its ventral portion, and fuses with the dorsal part of the septum intermedium. For a time an interventricular foramen exists above its ventral portion, but this foramen is ultimately closed by the fusion of the aortic septum with the ventricular septum[WP] future cardiac ventricle - + - + - + ZFA - + EMAPA @@ -438657,7 +438645,7 @@ - + Future brain vesicle that gives rise to telencephalic ventricle/lateral ventricles and 3rd ventricle. The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG] DHBA:10595 @@ -438677,14 +438665,14 @@ UBERON:0006284 early prosencephalic vesicle - + - + EHDAA2 @@ -438795,7 +438783,7 @@ - + @@ -438811,14 +438799,14 @@ UBERON:0006286 radius cartilage element - + - + EHDAA2 @@ -438896,7 +438884,7 @@ - + @@ -438913,7 +438901,7 @@ rib cartilage element - + @@ -438926,7 +438914,7 @@ - + EHDAA2 @@ -438954,7 +438942,7 @@ - + @@ -438977,7 +438965,7 @@ rib pre-cartilage condensation - + @@ -438990,7 +438978,7 @@ - + EHDAA2-abduced ZFA @@ -439025,7 +439013,7 @@ - + @@ -439042,14 +439030,14 @@ scapula cartilage element - + - + EHDAA2 @@ -439076,7 +439064,7 @@ - + @@ -439100,14 +439088,14 @@ scapula pre-cartilage condensation - + - + EHDAA2 @@ -439136,7 +439124,7 @@ - + @@ -439152,7 +439140,7 @@ shoulder joint primordium - + @@ -439165,7 +439153,7 @@ - + EHDAA2 @@ -439183,7 +439171,7 @@ - + A dense syncitial-like mesenchymal thickening in the dorsal mesogastrium[ISBN]. the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing spleen[MP]. check difference between splenic and spleen in EMAPA; note that in EHDAA2 the class 'spleen' refers to the mesenchyme UBERON:0009750 @@ -439200,7 +439188,7 @@ spleen primordium - + @@ -439213,7 +439201,7 @@ - + XAO @@ -439272,8 +439260,8 @@ - - + + A stapes endochondral element that is composed primarily of a pre-cartilage condensation. independent of the mesenchymal condensation that will form the otic capsule EHDAA2:0001910 @@ -439286,24 +439274,24 @@ stapes pre-cartilage condensation - + - + - + EHDAA2 - + cranial end DOI:10.1111/j.1469-7580.2005.00441.x EHDAA2 @@ -439334,7 +439322,7 @@ - + EHDAA2:0001912 EHDAA:9565 EMAPA:18345 @@ -439344,7 +439332,7 @@ sternebral bone pre-cartilage condensation - + @@ -439357,7 +439345,7 @@ - + EHDAA2 @@ -439634,7 +439622,7 @@ - + EHDAA:924 EMAPA:16663 RETIRED_EHDAA2:0002089 @@ -439646,14 +439634,14 @@ See: https://github.com/obophenotype/mouse-anatomy-ontology/issues/13 and https://github.com/obophenotype/uberon/issues/693 -- consider merging into trigeminal ganglion, as this complicates the model future trigeminal ganglion - + - + EHDAA2 @@ -439764,14 +439752,14 @@ - + - + Ventral part of the cloacal membrane separating the gut from the fetus external environment. [TFD][VHOG] EHDAA2:0004025 EHDAA:7011 @@ -439785,24 +439773,24 @@ During the 7th week the urorectal septum divides the cloacal membrane into a urogenital membrane (ventrally) and an anal membrane (dorsally) [http://www.embryology.ch/anglais/ugenital/genitexterne01.html] urogenital membrane - + - + - + EHDAA2 - + EHDAA2 @@ -440182,9 +440170,9 @@ - - - + + + Thin, narrow muscle placed near the anterior margin of the floor of the orbit. The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG] @@ -440216,15 +440204,15 @@ inferior oblique extraocular muscle http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png - + - + - + @@ -440237,20 +440225,20 @@ - + dbpedia - + orbital surface of the maxilla lateral to the lacrimal groove dbpedia - + laterally onto the eyeball deep to the lateral rectus by a short flat tendon dbpedia @@ -440332,14 +440320,14 @@ - + - + The superior oblique muscle, or obliquus oculi superior, is a fusiform muscle in the upper, medial side of the orbit whose primary action is downward, lateral rotation of the eye. One of the extraocular muscles, the superior oblique is the only muscle innervated by the trochlear nerve (the fourth cranial nerve). Cranial nerve IV innervated; dorsal in the obliquus group.[AAO] @@ -440370,11 +440358,11 @@ superior oblique extraocular muscle http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png - + - + @@ -440387,13 +440375,13 @@ - + dbpedia - + Outer posterior quadrant of the eyeball dbpedia @@ -440585,7 +440573,7 @@ - + The superior rectus muscle is a muscle in the orbit. It is one of the extraocular muscles. It is innervated by the superior division of the oculomotor nerve (Cranial Nerve III). In the primary position (looking straight ahead), the superior rectus muscle's primary function is elevation, although it also contributes to intorsion and adduction. The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG] @@ -440615,7 +440603,7 @@ superior rectus extraocular muscle http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png - + @@ -440628,7 +440616,7 @@ - + dbpedia @@ -440846,8 +440834,8 @@ - - + + The superior pharyngeal constrictor muscle is a quadrilateral muscle, thinner and paler than the inferior pharyngeal constrictor muscle and middle pharyngeal constrictor muscle. [WP,unvetted]. The superior constrictor is a muscle that is an integral part of the pharyngeal tube that is attached to the mandible, pterygomandibular raphe, basioccipital bone, pterygoid process and midline raphe and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED] EMAPA:18966 @@ -440869,25 +440857,25 @@ superior pharyngeal constrictor http://upload.wikimedia.org/wikipedia/commons/a/ac/Musculusconstrictorpharyngissuperior.png - + - + - + pharyngeal plexus Wikipedia - + dbpedia @@ -441542,7 +441530,7 @@ - + EMAPA:18047 FMA:20677 MA:0000444 @@ -441552,7 +441540,7 @@ Compare with lesser sac / omental bursa and its cavities / recesses left subhepatic recess - + @@ -441565,7 +441553,7 @@ - + unverified @@ -441702,14 +441690,14 @@ - + - + A small artery that passes through the ring of the stapes; while the stapedial artery is a temporary artery thought to disappear at late embryonic stage in humans, the mouse stapedial artery is complete by E13 and persists into adulthood[MP]. EHDAA2:0001908 @@ -441728,11 +441716,11 @@ stapedial artery - + - + @@ -441745,13 +441733,13 @@ - + EHDAA2 - + EHDAA2 @@ -442030,7 +442018,7 @@ - + The vasa hyaloidea propria and tunica vasculosa lentis are small branches of the hyaloid artery which fill the primary vitreous. EMAPA:18236 FMA:312395 @@ -442039,14 +442027,14 @@ UBERON:0006358 vasa hyaloidea propria - + - + EMAPA @@ -442176,8 +442164,8 @@ - - + + @@ -442192,24 +442180,24 @@ perihilar interstitium - + - + - + MA - + MA @@ -442265,9 +442253,9 @@ - - - + + + Missing definition for term UBERON:0006376. Please replace it using linked reference. https://sourceforge.net/tracker/?func=detail&aid=3123600&group_id=76834&atid=1205376 EMAPA:29671 @@ -442281,34 +442269,34 @@ UBERON:0006376 premacula segment of distal straight tubule - + - + - + - + MA - + MA - + MA @@ -442514,7 +442502,7 @@ - + @@ -442538,7 +442526,7 @@ "Endochondral ossification of the ventromedial portion of the braincase." [AAO:0000040] // "An endochondral bone that is located ventral to the pterosphenoid and dorsal to the parasphenoid. Basisphenoid is a median bone that is usually Y-shaped." [TAO:0000169] basisphenoid bone - + @@ -442551,7 +442539,7 @@ - + cjm @@ -442765,7 +442753,7 @@ - + The unique bone located in the glans penis of most mammals except humans; it is used for copulation and varies in size and shape by species. found in most mammals, with the exception of humans @@ -442782,14 +442770,14 @@ os penis - + - + Wikipedia @@ -442906,7 +442894,7 @@ - + @@ -442938,14 +442926,14 @@ os clitoris - + - + Wikipedia @@ -442979,7 +442967,7 @@ - + FMA:20676 SCTID:36051002 hepatic recess @@ -442988,14 +442976,14 @@ UBERON:0006442 subhepatic recess - + - + MA-abduced @@ -444769,7 +444757,7 @@ - + B09-18 BIRNLEX:1749 DHBA:10271 @@ -444800,14 +444788,14 @@ UBERON:0006473 Brodmann (1909) area 18 - + - + WP @@ -445832,7 +445820,7 @@ - + Part of the cytoarchitecturally defined frontal region of cerebral cortex. In the human, it occupies the triangular part of the inferior frontal gyrus (human) and, surrounding the anterior horizontal limb of the lateral sulcus (human), a portion of the orbital part of the inferior frontal gyrus (human). Bounded caudally by the anterior ascending limb of the lateral sulcus (human), it borders on the insula in the depth of the lateral sulcus. Cytoarchitectonically it is bounded caudally by the opercular area 44, rostrodorsally by the area 46 of Brodmann (human) and ventrally by the area 47 of Brodmann (human) (Brodmann-1909) (Adapted from Brain Info). Brodmann area 45 (BA45), is part of the frontal cortex in the human brain. Situated on the lateral surface, inferior to BA9 and adjacent to BA46. This area is also known as pars triangular (of the inferior frontal gyrus). In the human, it occupies the triangular part of inferior frontal gyrus (H) and, surrounding the anterior horizontal limb of lateral sulcus (H), a portion of the orbital part of inferior frontal gyrus (H). Bounded caudally by the anterior ascending limb of lateral sulcus (H), it borders on the insula in the depth of the lateral sulcus. In terms of cytoarchitecture, it is bounded caudally by the opercular area 44 (BA44), rostrodorsally by the middle frontal area 46 (BA46), and ventrally by the orbital area 47 (BA47) (Brodmann-1909)[Wikipedia:Brodmann_area_45]. B09-45 @@ -445856,14 +445844,14 @@ UBERON:0006482 Brodmann (1909) area 45 - + - + NIFSTD @@ -446740,7 +446728,7 @@ - + EMAPA:37423 FMA:55348 MA:0001760 @@ -446751,7 +446739,7 @@ UBERON:0006494 apex of arytenoid - + @@ -446764,7 +446752,7 @@ - + MA @@ -446793,7 +446781,7 @@ - + EMAPA:35621 FMA:75666 MA:0001183 @@ -446804,14 +446792,14 @@ Design pattern note: check if conforms to foramen pattern osseus cochlear canal - + - + MA @@ -446979,7 +446967,7 @@ - + The most superior muscles in the sole of the foot that abduct the second to fourth toes. These four muscles also act through the dorsal expansions to resist extension of the metatarsophalangeal joints and flexion of the interphalangeal joints. EMAPA:37517 FMA:37457 @@ -446998,14 +446986,14 @@ dorsal pes interosseous muscle http://upload.wikimedia.org/wikipedia/commons/5/57/Gray446.png - + - + dbpedia @@ -447065,7 +447053,7 @@ - + Any of three muscles with origin from the third, fourth, and fifth metatarsal bones, with insertion to the proximal phalanx of the same toes, with nerve supply from the lateral plantar nerve, and whose action adducts the three lateral toes. EMAPA:37518 FMA:37458 @@ -447083,14 +447071,14 @@ plantar interosseous muscle of pes http://upload.wikimedia.org/wikipedia/commons/2/21/Gray447.png - + - + dbpedia @@ -447230,7 +447218,7 @@ - + Any of the muscles of the autopod region that lie between metacarpal or metatarsal bones. interosseous Wikipedia:Interossei @@ -447241,14 +447229,14 @@ UBERON:0006508 interosseous muscle of autopod - + - + cjm @@ -447271,7 +447259,7 @@ - + Part of what are called the basal ganglia of the brain which consist of the globus pallidus and the ventral pallidum. BAMS:PAL @@ -447287,14 +447275,14 @@ UBERON:0006514 pallidum - + - + MA @@ -447336,7 +447324,7 @@ - + The predominant portion of the globus pallidus in the striatopallidal system, which is defined by connectivity and neurochemical staining. The dorsal pallidum is distinguished from the ventral pallidum by a boundary that is partially defined by the anterior commissure. The remainder of the boundary is indistinct in sections stained for Nissl substance ( Heimer-1995 ). BAMS:PALd BTO:0004376 @@ -447350,7 +447338,7 @@ UBERON:0006516 dorsal pallidum - + @@ -447363,7 +447351,7 @@ - + BTO @@ -448288,10 +448276,11 @@ - - + + An organ system subdivision that is a network of vessels capable of removing accumulating protein and fluid from the interstitial space and returning it to the vascular space. In some species, this network is connected to the immune system via lymph nodes and lymphocyte-producing organs, with the whole being the lymphoid system. consider merging with lymph vasculature + Part of the circulatory system which consists of a series of vessels which collect blood (exclusive of erythrocytes) which seep through capillary walls and return it to the veins.[AAO] lymporeticular in FMA this is part of the cardiovascular system, but here we treat the CV system as a separate component of the circulatory system from the lymphatic system @@ -448311,27 +448300,28 @@ lymporeticular system UBERON:0006558 + lymphatic part of lymphoid system - + - + - + AAO - + FMA MA @@ -449305,7 +449295,7 @@ - + @@ -449320,14 +449310,14 @@ UBERON:0006585 vestibular organ - + - + NIFSTD @@ -449355,7 +449345,7 @@ - + @@ -449376,7 +449366,7 @@ UBERON:0006586 otolymph - + @@ -449389,7 +449379,7 @@ - + Wikipedia:Perilymph @@ -449489,7 +449479,7 @@ - + @@ -449514,14 +449504,14 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb - + - + Wikipedia @@ -449578,7 +449568,7 @@ - + The round ligament of the uterus originates at the uterine horns, in the parametrium. It leaves the pelvis via the deep inguinal ring, passes through the inguinal canal and continues on to the labia majora where its fibers spread and mix with the tissue of the mons pubis[WP]. A fibromuscular band that attaches to the uterus and then passes along the broad ligament, out through the inguinal ring, and into the labium majus[MESH]. round ligament FMA:20420 @@ -449598,7 +449588,7 @@ round ligament of uterus http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1138.png - + @@ -449611,7 +449601,7 @@ - + lower gubernaculum Wikipedia @@ -449970,14 +449960,14 @@ - + - + Ossified pars articularis of the palatoquadrate cartilage. Endochondral bone that commonly articulates with the ectopterygoid anteriorly, the metapterygoid dorsally, and the symplectic postero-medially. The quadrate is formed from the posterior part of the palatoquadrate cartilage, or pars quadrata. The quadrate is a paired bone.[TAO] @@ -450001,24 +449991,24 @@ quadrate bone - + - + - + AAO - + ZFA @@ -450225,7 +450215,7 @@ - + @@ -450242,14 +450232,14 @@ presumptive enteric nervous system - + - + NCBIBook:NBK10065 @@ -450423,7 +450413,7 @@ - + Unpaired thin dorsal sheet of cartilage that partially covers the posterior chondrocranium. Roof between frontoparietal foramen and otic capsules, confluent with taenia tecti marginales.[AAO] relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO] @@ -450437,7 +450427,7 @@ UBERON:0006605 tectum synoticum - + @@ -450450,7 +450440,7 @@ - + ZFA @@ -450521,7 +450511,7 @@ - + A cartilaginous joint that connects left and right mandibles/dentary bones. Mandibular symphysis is unpaired[TAO,modified]. this is placed as part of lower jaw region, as in this ontology the skeleton does not include joints Joint that articulates the left and right dentary bones. Mandibular symphysis is unpaired.[TAO] @@ -450545,7 +450535,7 @@ mandibular symphysis http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png - + @@ -450558,7 +450548,7 @@ - + connects adjacent mandibles @@ -450941,8 +450931,8 @@ - - + + A sheet of extracellular matrix. Aponeuroses are layers of flat broad tendons. They have a shiny, whitish-silvery color, and are histologically similar to tendons, but are very sparingly supplied with blood vessels and nerves. When dissected, aponeuroses are papery, and peel off by sections. The primary regions with thick aponeurosis is in the ventral abdominal region, the dorsal lumbar region, and in the palmar region. Their primary function is to join muscles and the body parts the muscles act upon[Wikipedia:Aponeurosis]. in ZFA, aponeuroses are subtypes of tendons, but this is inconsistent with tendons being muscle-bone connections @@ -450962,11 +450952,11 @@ aponeurosis http://upload.wikimedia.org/wikipedia/commons/e/e6/Aponeurosis.png - + - + @@ -450979,13 +450969,13 @@ - + FMA - + AEO @@ -451538,7 +451528,7 @@ - + @@ -451562,7 +451552,7 @@ coracoid process of scapula http://upload.wikimedia.org/wikipedia/commons/a/a6/Gray205_left_scapula_lateral_view.png - + @@ -451575,7 +451565,7 @@ - + EMAPA FMA @@ -452267,7 +452257,7 @@ - + The dense fibrous connective tissue layer that covers the testis. The layer of connective tissue covering the testicles. [Wikipedia_(15/09/09)][VHOG] The tunica albuginea testis is the major component of the capsule of mammalian testes. (...) Our results from studying the mole provide evidence that the spatio-temporal pattern of testis development is not perfectly conserved in mammals, since we found differences with respect to the mouse testis organogenesis. This fact is even more significant when we consider that, apart from the mouse, the mole is probably the one of the best-known mammalian species in terms of the genetic control of testis development, implying that more peculiarities would be found if more species were investigated.[uncertain][VHOG] @@ -452290,14 +452280,14 @@ UBERON:0006643 tunica albuginea of testis - + - + EHDAA2 @@ -452658,9 +452648,9 @@ - - - + + + @@ -452681,15 +452671,15 @@ Some sources consider it a part of the broad ligament of uterus[2] while other sources just consider it a "termination" of the ligament.[3] suspensory ligament of ovary - + - + - + @@ -452702,19 +452692,19 @@ - + FMA-modified - + Wikipedia - + Wikipedia @@ -452744,14 +452734,14 @@ - + - + The outer coelomic epithelial covering of the testis; a sac of serous tissue covering the testis and the epididymis within which the testis can move about; it covers the tunica albuginea. The tunica vaginalis is the serous covering of the testis. It is a pouch of serous membrane, derived from the saccus vaginalis of the peritoneum, which in the fetus preceded the descent of the testis from the abdomen into the scrotum. After its descent, that portion of the pouch which extends from the abdominal inguinal ring to near the upper part of the gland becomes obliterated; the lower portion remains as a shut sac, which invests the surface of the testis, and is reflected on to the internal surface of the scrotum; hence it may be described as consisting of a visceral and a parietal lamina. tunica vaginalis testis has two layers: visceral and parietal; the visceral layer lies on the anterolateral surface of the testis and epididymis; the parietal layer lines the inner surface of the scrotal sac @@ -452776,11 +452766,11 @@ tunica vaginalis testis http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray1148.png - + - + @@ -452793,13 +452783,13 @@ - + EMAPA - + Wikipedia @@ -452865,9 +452855,9 @@ - - - + + + The appendix testis is a vestigial remnant of the Mullerian duct, present on the upper pole of the testis and attached to the tunica vaginalis. It is present about 90% of the time. the label hydatid of morgagni is ambiguous w.r.t male vs female. The ncita structure 'hydatic of morgani' is male and thus belongs here. a cystlike remnant of the müllerian duct on the upper end of the testis; corresponding female structure: one of the small pedunculated structures attached to the uterine tubes near their fimbriated end; remnants of the mesonephric ducts[http://medical-dictionary.thefreedictionary.com/]. @@ -452894,34 +452884,34 @@ appendix testis http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray1148.png - + - + - + - + EMAPA - + cjm - + Wikipedia @@ -453073,7 +453063,7 @@ - + Erectile tissue at the end of the clitoris, which is continuous with the intermediate part of the vestibulovaginal bulbs[BTO]. The clitoral glans (glans clitoridis) is an external portion of the clitoris[WP]. BTO:0003117 EMAPA:30829 @@ -453091,14 +453081,14 @@ glans clitoris http://upload.wikimedia.org/wikipedia/commons/8/8c/Clitoris_inner_anatomy.gif - + - + cjm @@ -453310,7 +453300,7 @@ - + The deep dorsal vein of the penis lies beneath the deep fascia of the penis; it receives the blood from the glans penis and corpora cavernosa penis and courses backward in the middle line between the dorsal arteries; near the root of the penis it passes between the two parts of the suspensory ligament and then through an aperture between the arcuate pubic ligament and the transverse ligament of the pelvis, and divides into two branches, which enter the pudendal plexus. The deep vein also communicates below the symphysis pubis with the internal pudendal vein. EMAPA:19219 @@ -453322,14 +453312,14 @@ deep dorsal vein of penis - + - + FMA/obol @@ -453351,7 +453341,7 @@ - + Anatomical cavity for the proximal articular surface of the proximal limb or fin element with the scapulocoracoid or equivalent structure. Cavity for the articulation of the forelimb formed by the scapula, coracoid, and clavicle.[AAO] relationship loss: part_of scapular area (AAO:0000935)[AAO] @@ -453378,14 +453368,14 @@ glenoid fossa http://upload.wikimedia.org/wikipedia/commons/e/ec/Gray328.png - + - + to be revised after scapulocoracoid fixes @@ -453495,8 +453485,8 @@ - - + + A joint that connects one phalanx to another along a proximodistal axis. Hinge joints between the phalanges of the hand or foot[ncithesaurus:Interphalangeal_Joint]. EMAPA:37884 @@ -453510,24 +453500,24 @@ interphalangeal joint - + - + - + cjm - + two phalanges in series @@ -453720,7 +453710,7 @@ - + The galea aponeurotica (epicranial aponeurosis, aponeurosis epicranialis) is a tough layer of dense fibrous tissue which covers the upper part of the cranium; behind, it is attached, in the interval between its union with the Occipitales, to the external occipital protuberance and highest nuchal lines of the occipital bone; in front, it forms a short and narrow prolongation between its union with the Frontales. On either side it gives origin to the Auriculares anterior and superior; in this situation it loses its aponeurotic character, and is continued over the temporal fascia to the zygomatic arch as a layer of laminated areolar tissue. It is closely connected to the integument by the firm, dense, fibro-fatty layer which forms the superficial fascia of the scalp: it is attached to the pericranium by loose cellular tissue, which allows the aponeurosis, carrying with it the integument to move through a considerable distance. EMAPA:19210 FMA:46768 @@ -453741,14 +453731,14 @@ epicranial aponeurosis http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png - + - + FMA @@ -453884,8 +453874,8 @@ - - + + The hemiazygos vein (vena azygos minor inferior) is a vein running superiorly in the lower thoracic region, just to the left side of the vertebral column. The major anatomic variation between the pig and other mammalian species is the presence of the large left azygos vein, which enters the coronary sinus (Fig. 1). In other mammals, hemiazygos vein enters the pre- cava. @@ -453907,24 +453897,24 @@ hemiazygos vein http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray480.png - + - + - + ISBN:0443065837 - + FMA/obol @@ -454030,7 +454020,7 @@ - + The accessory hemiazygos vein (vena azygos minor superior) is a vein on the left side of the vertebral column that generally drains the fifth through eighth intercostal spaces on the left side of the body[WP]. TODO - add superclass @@ -454048,14 +454038,14 @@ accessory hemiazygos vein http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray480.png - + - + FMA/obol @@ -454292,7 +454282,7 @@ - + @@ -454316,14 +454306,14 @@ alveolar canal http://upload.wikimedia.org/wikipedia/commons/7/71/Gray157.png - + - + EMAPA @@ -454348,14 +454338,14 @@ - + - + The three-lobed cloverleaf-shaped aponeurosis situated at the center of the diaphragm; the central tendon is fused with the fibrous pericardium that provides attachment for the muscle fibers. In mammals, the diaphragm muscle divides the thoracoabdominal cavity into thorax and abdomen. In most mammals, the diaphragm is a flat sheet with muscle fibers radiating outward from a central tendon, and the diaphragm's apposition to the cranial surface of the liver gives it a dome-shape. Muscle fiber contraction reduces the curvature of the dome, thereby expanding the thoracic cavity and aspirating air into the lungs.[well established][VHOG] EMAPA:17702 @@ -454373,24 +454363,24 @@ central tendon of diaphragm - + - + - + VHOG - + definitional @@ -454455,7 +454445,7 @@ - + A fat pad that is part of a orbital region. EMAPA:19152 FMA:59005 @@ -454470,14 +454460,14 @@ UBERON:0006671 orbital fat pad - + - + inferred @@ -454530,7 +454520,7 @@ - + @@ -454548,14 +454538,14 @@ Design pattern notes: see also incisive duct and foramen incisive canal - + - + EMAPA @@ -455276,7 +455266,7 @@ - + On the lower surface of the basilar part of occipital bone, about 1 cm. in front of the foramen magnum, is the pharyngeal tubercle which gives attachment to the fibrous raphC) of the pharynx, also known as the pharyngeal raphe. This is the point of attachment for the superior pharyngeal constrictor muscle. EMAPA:19250 FMA:75746 @@ -455285,7 +455275,7 @@ UBERON:0006685 pharyngeal tubercle - + @@ -455298,7 +455288,7 @@ - + EMAPA @@ -455376,7 +455366,7 @@ - + The median sacral vein (or middle sacral veins) accompany the corresponding artery along the front of the sacrum, and join to form a single vein, which ends in the left common iliac vein; sometimes in the angle of junction of the two iliac veins. EMAPA:26064 @@ -455389,14 +455379,14 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb - + - + FMA/obol @@ -455551,7 +455541,7 @@ - + The deep dorsal vein of clitoris is a vein which drains to the vesical plexus. EMAPA:19218 @@ -455563,14 +455553,14 @@ deep dorsal vein of clitoris - + - + FMA/obol @@ -456206,7 +456196,7 @@ - + @@ -456241,14 +456231,14 @@ foramen cecum of tongue https://upload.wikimedia.org/wikipedia/commons/a/a3/Foramen_caecum.png - + - + EHDAA2 @@ -456367,7 +456357,7 @@ - + @@ -456390,14 +456380,14 @@ UBERON:0006714 tibiofibula - + - + AAO @@ -456505,7 +456495,7 @@ - + @@ -456535,14 +456525,14 @@ UBERON:0006716 mesopodium region - + - + MA:th @@ -456668,7 +456658,7 @@ - + The medial pterygoid is a pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to the medial pterygoid and attaches to the cranial base and the medial side of the mandibular angle. @@ -456699,14 +456689,14 @@ medial pterygoid muscle http://upload.wikimedia.org/wikipedia/commons/e/ec/Musculuspterygoideusmedialis.png - + - + MFMO @@ -456831,8 +456821,8 @@ - - + + Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, is innervated by the lateral pterygoid nerve branches, and attaches to the condylar process of the mandible and temporomandibular joint (TMJ) capsule, and the cranial base. Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, is innervated by the lateral pterygoid nerve branches, and attaches to the condylar process of the mandible and TMJ capsule, and the cranial base.[FEED] @@ -456867,25 +456857,25 @@ https://github.com/obophenotype/uberon/issues/539 http://upload.wikimedia.org/wikipedia/commons/b/bb/Musculuspterygoideuslateralis.png - + - + - + Great wing of sphenoid and pterygoid plate dbpedia - + dbpedia @@ -457016,7 +457006,7 @@ - + We use this class to group the medial and lateral pterygoids of mammals as well as the pterygoideus of amphibians and reptiles. Note that FEED includes a distinct class for the reptilian pterygoideus. In future, this branch of the ontology may be refined to include a more complete classification of jaw adductors across gnathostomes. See for example DOI:10.1134/S1062359010090050 AAO:0010730 EMAPA:25139 @@ -457031,14 +457021,14 @@ pterygoid muscle - + - + generalized dbpedia @@ -457072,9 +457062,9 @@ - - - + + + @@ -457109,15 +457099,15 @@ alisphenoid bone http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png - + - + - + @@ -457130,19 +457120,19 @@ - + MA - + FMA-abduced-lr - + ISBN:1588903958 @@ -457225,7 +457215,7 @@ - + @@ -457250,14 +457240,14 @@ manubrium of malleus - + - + cjm @@ -457328,7 +457318,7 @@ - + @@ -457357,14 +457347,14 @@ cochlear modiolus http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png - + - + MA @@ -457421,7 +457411,7 @@ - + The osseous spiral lamina is a bony shelf or ledge which projects from the modiolus into the interior of the canal, and, like the canal, takes two-and-three-quarter turns around the modiolus. It reaches about half-way toward the outer wall of the tube, and partially divides its cavity into two passages or scalae, of which the upper is named the scala vestibuli, while the lower is termed the scala tympani. EMAPA:35622 FMA:77710 @@ -457440,14 +457430,14 @@ UBERON:0006724 osseus spiral lamina - + - + FMA @@ -457508,7 +457498,7 @@ - + A spiral thickening of the fibrous lining of the cochlear wall. Spiral ligament secures the membranous cochlear duct to the bony spiral canal of the cochlea. Its spiral ligament fibrocytes function in conjunction with the stria vascularis to mediate cochlear ion homeostasis. this is not classified as a ligament in FMA UBERON:0028186 @@ -457529,14 +457519,14 @@ spiral ligament - + - + MESH-def @@ -458077,7 +458067,7 @@ - + Mammals typically have four parathyroids, while other groups typically have six EHDAA2:0001954 @@ -458094,14 +458084,14 @@ superior parathyroid gland - + - + FMA-abduced-lr @@ -458131,9 +458121,9 @@ - - - + + + Mammals typically have four parathyroids, while other groups typically have six EHDAA2:0000821 EHDAA:3864 @@ -458150,34 +458140,34 @@ inferior parathyroid gland - + - + - + - + FMA-abduced-lr - + http://emedicine.medscape.com/article/845125-overview - + epithelium EHDAA2 @@ -458212,7 +458202,7 @@ - + @@ -458237,14 +458227,14 @@ median lingual swelling http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray979.png - + - + EHDAA2 @@ -458486,7 +458476,7 @@ - + @@ -458499,7 +458489,7 @@ - + The zonule of Zinn (Zinn's membrane, ciliary zonule) is a ring of fibrous strands connecting the ciliary body with the crystalline lens of the eye. The zonule of Zinn is split into two layers: a thin layer, which lines the hyaloid fossa, and a thicker layer, which is a collection of zonular fibers. Together, the fibers are known as the suspensory ligament of the lens[WP]. Modified or toughened vitreous that suspend the lens at the equator to the non-pigmented epithelium of the ciliary zone. In zebrafish, dorsal zonules are thickened as compared to ventral zonules. In both dorsal and ventral regions, these fibers delimit the vitreous body aqueous humor boundary[ZFA]. FMA:58838 @@ -458524,11 +458514,11 @@ suspensory ligament of lens http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg - + - + @@ -458541,13 +458531,13 @@ - + FMA - + ZFA @@ -458628,13 +458618,13 @@ - + - + Layer of nonkeratinized squamous epithelium lining the conjunctiva, overlying scleral tissue. BTO:0005131 EFO:0001916 @@ -458649,7 +458639,7 @@ epithelium of conjunctiva - + @@ -458662,7 +458652,7 @@ - + BTO @@ -460361,7 +460351,7 @@ - + A nerve that transmits nerve impulses from the central nervous system to effectors such as muscles or glands. AEO:0000202 @@ -460376,14 +460366,14 @@ UBERON:0006798 efferent nerve - + - + AEO @@ -460619,7 +460609,7 @@ - + @@ -460648,14 +460638,14 @@ obturator foramen http://upload.wikimedia.org/wikipedia/commons/f/ff/Skeletpelvis-pubis.jpg - + - + AAO @@ -460870,7 +460860,7 @@ - + A bony projection on the distal epiphysis of the humerus that is the attachment site for the flexor muscles of the manus. This condyle faces posteriorly (for sprawling tetrapods) or medially (for erect tetrapods). Rounded projection at the distal head of the humerus and medial to the humeral head, which serves as a place of attachment for the flexor muscles antogonistic to those that attach to the lateral epicondyle.[AAO] entepicondylar @@ -460893,14 +460883,14 @@ entepicondyle of humerus http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray329-Medial_epicondyle_of_the_humerus.png - + - + FMA @@ -460977,7 +460967,7 @@ - + A bony projection on the distal epiphysis of the humerus that is the attachment site for the extensor muscles of the distal parts of the forelimb. In humans, this is known as the lateral epicondyle, but the position varies across tetrapods. Rounded projection at the distal head of the humerus (larger and more prominent than the lateral epicondyle) and lateral to the humeral head, which serves as a place of attachment for the mm extensor antebrachii et carpi radialis, extensor digitorum communis, and in part to the m extensor antebrachii et carpi ulnaris.[AAO] ectepicondyle @@ -460998,14 +460988,14 @@ ectepicondyle of humerus http://upload.wikimedia.org/wikipedia/commons/c/c6/Gray420.png - + - + FMA @@ -461328,8 +461318,8 @@ - - + + @@ -461346,11 +461336,11 @@ nasal skeleton - + - + @@ -461363,13 +461353,13 @@ - + FMA - + facial series Kardong-abduced @@ -461398,7 +461388,7 @@ - + @@ -461419,7 +461409,7 @@ UBERON:0006815 areolar connective tissue - + @@ -461432,7 +461422,7 @@ - + FMA @@ -462578,7 +462568,7 @@ - + A raised area of the biting surface of a tooth. this class may be obsoleted and split - the TAO class is generic, the mammalian class refers specifically to a molariform tooth Anatomical structure that is a natural outgrowth, prominence, or point that is part of the surface of a tooth.[TAO] @@ -462597,7 +462587,7 @@ cusp of tooth - + @@ -462610,7 +462600,7 @@ - + FMA @@ -462814,7 +462804,7 @@ - + @@ -462829,14 +462819,14 @@ UBERON:0006848 posterior pretectal nucleus - + - + ISBN:0471888893 @@ -462889,8 +462879,8 @@ - - + + @@ -462939,24 +462929,24 @@ scapula https://upload.wikimedia.org/wikipedia/commons/5/59/Pectoral_girdles-en.svg - + - + - + ZFA - + definitional @@ -463114,12 +463104,12 @@ - + - + A region of nephron tubule that is part of a cortex of kidney. EMAPA:18976 MA:0002609 @@ -463129,14 +463119,14 @@ UBERON:0006853 renal cortex tubule - + - + MA @@ -463164,8 +463154,8 @@ - - + + https://sourceforge.net/tracker/?func=detail&aid=3123598&group_id=76834&atid=1205376 EMAPA:28402 MA:0002615 @@ -463177,24 +463167,24 @@ UBERON:0006854 distal straight tubule postmacula segment - + - + - + MA - + MA @@ -463240,7 +463230,7 @@ - + A muscular coat that is part of a ureter. FMA:15893 MA:0002654 @@ -463255,14 +463245,14 @@ UBERON:0006855 muscular coat of ureter - + - + FMA @@ -463319,9 +463309,9 @@ - - - + + + Structures in fishes homologous to the cortical tissue of the mammalian adrenal gland; they are in close proximity to or imbedded in the head kidney. check isa - not a true gland? There are two types of interrenal cells identified (1) The noradrenaline type, which contain heterogeneous vesicles with electron-dense granules located asymmetrically within the vesicular membrane. (2) The adrenaline type, in which the vesicles are smaller and contain homogenous electron-lucent granules that are separated from the vesicular membrane by a visible -- halo http://dev.biologists.org/content/130/10/2107.full An epithelial structure consisting of steroid producing cells interposed with chromaffin cells embedded within the head kidney. The interrenal gland is thought to be the equivalent of the mammalian adrenal cortex in zebrafish. Hsu et al. 2003.[TAO] @@ -463341,34 +463331,34 @@ interrenal gland - + - + - + - + ZFA - + ZFA - + DOI:10.1242/dev.00427 @@ -463570,7 +463560,7 @@ - + @@ -463611,7 +463601,7 @@ swim bladder - + @@ -463624,7 +463614,7 @@ - + Wikipedia @@ -463906,7 +463896,7 @@ - + A metaphysis that is part of a femur. EMAPA:37540 FMA:32875 @@ -463917,14 +463907,14 @@ metaphysis of femur - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -464149,7 +464139,7 @@ - + @@ -464162,7 +464152,7 @@ - + @@ -464185,24 +464175,24 @@ Dumont, et al. question whether the endostyle in ammocetes is homologous with that of the urochordates and cephalochordates[WP]. endostyle - + - + - + http://webs.lander.edu/rsfox/invertebrates/ammocoetes.html - + Wikipedia:Endostyle @@ -464587,7 +464577,7 @@ - + A head mesenchyme that develops_from a mesoderm. merged in 'head mesoderm' from XAO/AAO and EFO here. Partially implements https://github.com/obophenotype/uberon/wiki/The-neural-crest NC meeting scheme AAO:0011051 @@ -464615,7 +464605,7 @@ head mesenchyme from mesoderm - + @@ -464628,7 +464618,7 @@ - + EHDAA2 XAO @@ -464731,7 +464721,7 @@ - + @@ -464754,14 +464744,14 @@ ala of nose http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png - + - + FMA-abduced-lr @@ -465950,13 +465940,13 @@ - + - - + + @@ -465973,11 +465963,11 @@ crista ampullaris neuroepithelium - + - + @@ -465990,13 +465980,13 @@ - + MA - + FMA @@ -466152,7 +466142,7 @@ - + @@ -466198,14 +466188,14 @@ efferent duct http://upload.wikimedia.org/wikipedia/commons/b/b5/Hodenschema.svg - + - + FMA @@ -466271,7 +466261,7 @@ - + @@ -466298,14 +466288,14 @@ male genital duct - + - + FMA-abduced-lr @@ -467024,7 +467014,7 @@ - + The stroma of the ovary is a peculiar soft tissue, abundantly supplied with blood vessels, consisting for the most part of spindle-shaped cells with a small amount of ordinary connective tissue. These cells have been regarded by some anatomists as unstriped muscle cells, which, indeed, they most resemble; by others as connective-tissue cells. On the surface of the organ this tissue is much condensed, and forms a layer composed of short connective-tissue fibers, with fusiform cells between them. The stroma of the ovary may contain interstitial cells resembling those of the testis. CALOHA:TS-1246 @@ -467046,14 +467036,14 @@ ovary stroma - + - + FMA @@ -467113,7 +467103,7 @@ - + The distal part of adenohypophysis: the part that makes up the main body of the gland. Region of the adenohypophysis which produces the follicle-stimulating hormone, luteinizing hormone, prolactin, thyrotropin, and adrenocorticotropin.[AAO] The anterior part of the adenohypophysis. [TFD][VHOG] @@ -467153,14 +467143,14 @@ pars distalis of adenohypophysis - + - + MA @@ -468303,7 +468293,7 @@ - + Cranial neural crest that migrates into the mandibular arch. TAO:0007064 XAO:0000024 @@ -468312,7 +468302,7 @@ UBERON:0007098 mandibular neural crest - + @@ -468325,7 +468315,7 @@ - + ZFA @@ -468341,7 +468331,7 @@ - + Cranial neural crest that migrates into the hyoid arch. TAO:0007065 XAO:0000025 @@ -468351,7 +468341,7 @@ UBERON:0007099 hyoid neural crest - + @@ -468364,7 +468354,7 @@ - + ZFA @@ -468389,7 +468379,7 @@ - + @@ -468400,7 +468390,7 @@ - + A hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood or analogs[GO,modified]. note we reserve the subclass 'heart' from the vertebrate multi-chambered heart. 'The first heart-like organ is believed to have appeared 500my ago in an ancestral bilaterian'. Amniotes: four-chambered heart. Amphibians: two atria, one ventricle, pulmonary; fish: single atrium and ventricle; amphioxus: tubular, non-striated, closed, unidirectional; ascidians: tubular, striated, open, bidirectional; arthropods: tubular, open; C elegans: contractile pharynx; Cnideria: striated muscle cells associated with gastrodermis @@ -468415,14 +468405,14 @@ Gene notes: Bmp, Nkx, Gata primary circulatory organ - + - + GO uses blood circulation generically to include the haemolymphatic fluid of arthropods @@ -468524,8 +468514,8 @@ - - + + One of the minute vascular projections of the fetal chorion that combines with maternal uterine tissue to form the placenta. The mouse and human placentas have labyrinthine and villous types of interdigitation between maternal and fetal tissues, respectively The bulk of the villi consist of connective tissues in which blood vessels are found. Most of the cells in the connective tissue core of the villi are fibroblasts. Macrophages known as Hofbauer cells are also present. @@ -468553,24 +468543,24 @@ chorionic villus http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray29.png - + - + - + BTO - + MP-def @@ -468667,7 +468657,7 @@ - + @@ -468686,14 +468676,14 @@ UBERON:0007108 vernix caseosa - + - + MP @@ -470440,7 +470430,7 @@ - + Teleost head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis[ZFA,modified]. The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis. Davidson and Zon 2004.[TAO] @@ -470456,14 +470446,14 @@ head kidney - + - + cjm @@ -470943,7 +470933,7 @@ - + A spinal artery that arises from the vertebral artery, adjacent to the medulla oblongata[WP,modified]. EMAPA:18243 @@ -470958,14 +470948,14 @@ posterior spinal artery - + - + EHDAA2 @@ -471199,7 +471189,7 @@ - + A valve leafleft that is part of a mitral valve. Leaf of cardiac valve which has as its parts the anterior, and posterior leaflets that is attached to the chorda tendinea of left ventricle and to the frbrous ring of mitral valve. The mature AV (atrioventricular) valve of the adult zebrafish 2-chambered heart is structurally similar to the mammalian AV valves with stratified ECM (extracellular matrix) and supporting chordae tendineae. Therefore, the major cellular and molecular events of valve development are largely conserved among animals with hearts composed of multiple chambers.[uncertain][VHOG] @@ -471216,14 +471206,14 @@ mitral valve leaflet - + - + FMA-abduced @@ -471447,7 +471437,7 @@ - + A vein that drains into the internal thoracic vein, anastomosing with the inferior epigastric vein at the level of the umbilicus and drains the anterior part of the abdominal wall and some of the diaphragm. Along its course, it is accompanied by a similarly named artery, the superior epigastric artery. EMAPA:18761 @@ -471460,14 +471450,14 @@ superior epigastric vein - + - + FMA/obol @@ -472298,7 +472288,7 @@ - + The medial border of the scapula (vertebral border, medial margin) is the longest of the three borders, and extends from the medial to the inferior angle. It is arched, intermediate in thickness between the superior and the axillary borders, and the portion of it above the spine forms an obtuse angle with the part below. This border presents an anterior and a posterior lip, and an intermediate narrow area. The anterior lip affords attachment to the Serratus anterior; the posterior lip, to the Supraspinatus above the spine, the Infraspinatus below; the area between the two lips, to the Levator scapulC& above the triangular surface at the commencement of the spine, to the Rhomboideus minor on the edge of that surface, and to the Rhomboideus major below it; this last is attached by means of a fibrous arch, connected above to the lower part of the triangular surface at the base of the spine, and below to the lower part of the border. consider merging with UBERON:1500000 scapular blade, depending on https://github.com/obophenotype/uberon/issues/339. See also http://www.ncbi.nlm.nih.gov/pubmed/20136669 @@ -472319,7 +472309,7 @@ medial border of scapula - + @@ -472332,7 +472322,7 @@ - + PMID:20136669 @@ -473285,7 +473275,7 @@ - + The structure from the trachea, bronchi, and bronchioles that forms the airways that supply air to the lungs. The lining of the tracheobronchial tree consists of ciliated columnar epithelial cells. UBERON:0004102 @@ -473302,14 +473292,14 @@ tracheobronchial tree - + - + Wikipedia @@ -473939,14 +473929,14 @@ - + - + One of two subdivisions of the entorhinal cortex, located laterally. LEC BAMS:ENTl @@ -473965,24 +473955,24 @@ Connectivity notes: The lateral entorhinal cortex, for example, is strongly connected to the perirhinal cortex, olfactory and insular cortex and the amygdala.[http://www.scholarpedia.org/article/Entorhinal_cortex] lateral entorhinal cortex - + - + - + MA - + MA @@ -474477,7 +474467,7 @@ - + relationship to Meckel's cartilage to be added Subsequent vertebrate evolution has also involved major alterations to the pharynx; perhaps the most notable occurred with the evolution of the gnathostomes. This involved substantial modifications to the most anterior pharyngeal segments, with the jaw forming from the first, anterior, pharyngeal segment, while the second formed its supporting apparatus, the hyoid.[well established][VHOG] EHDAA2:0000031 @@ -474491,14 +474481,14 @@ UBERON:0007237 1st arch mandibular component - + - + EHDAA2 @@ -474536,7 +474526,7 @@ - + relationship to palatoquadrate to be added Subsequent vertebrate evolution has also involved major alterations to the pharynx; perhaps the most notable occurred with the evolution of the gnathostomes. This involved substantial modifications to the most anterior pharyngeal segments, with the jaw forming from the first, anterior, pharyngeal segment, while the second formed its supporting apparatus, the hyoid.[well established][VHOG] EHDAA2:0000038 @@ -474546,14 +474536,14 @@ UBERON:0007238 1st arch maxillary component - + - + EHDAA2 @@ -474651,7 +474641,7 @@ - + A tunica adventitia that is part of a artery. EMAPA:36295 EV:0100030 @@ -474663,14 +474653,14 @@ UBERON:0007240 tunica adventitia of artery - + - + FMA @@ -475097,7 +475087,7 @@ - + The lymph tissue on the floor of the oropharyngeal passage, near the root of the tongue. FMA:54836 MA:0000773 @@ -475113,14 +475103,14 @@ lingual tonsil https://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg - + - + FMA-abduced-lr @@ -475866,7 +475856,7 @@ - + A pre-cartilage condensation that is part of a trachea. EHDAA2:0002070 EHDAA:7082 @@ -475874,14 +475864,14 @@ UBERON:0007267 trachea pre-cartilage rings - + - + EHDAA2 @@ -476126,7 +476116,7 @@ - + @@ -476147,14 +476137,14 @@ UBERON:0007272 pectoral appendage skeleton - + - + VSAO @@ -476189,7 +476179,7 @@ - + @@ -476207,14 +476197,14 @@ UBERON:0007273 pelvic appendage skeleton - + - + VSAO @@ -476248,7 +476238,7 @@ - + A crista ampullaris neuroepithelium that is part of a anterior semicircular duct. TODO - unvetted @@ -476270,14 +476260,14 @@ crista of ampulla of anterior semicircular duct of membranous laybrinth - + - + Phenoscape @@ -476587,8 +476577,8 @@ - - + + @@ -476615,24 +476605,24 @@ presumptive hindbrain - + - + - + XAO-abduced - + cjm @@ -476689,7 +476679,7 @@ - + @@ -476703,14 +476693,14 @@ UBERON:0007278 presumptive sinus venosus - + - + ZFA @@ -476851,7 +476841,7 @@ - + @@ -476870,14 +476860,14 @@ presumptive midbrain hindbrain boundary - + - + ZFA @@ -476916,7 +476906,7 @@ - + @@ -476933,14 +476923,14 @@ presumptive segmental plate - + - + https://github.com/obophenotype/uberon/wiki/The-neural-crest EDHAA2 @@ -477085,7 +477075,7 @@ - + @@ -477111,7 +477101,7 @@ presumptive paraxial mesoderm - + @@ -477127,7 +477117,7 @@ - + https://github.com/obophenotype/uberon/issues/1277 @@ -477961,8 +477951,8 @@ - - + + A glomerular capillary that is part of a pronephros. TAO:0005309 ZFA:0005309 @@ -477970,25 +477960,25 @@ UBERON:0007306 pronephric glomerular capillary - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -478015,7 +478005,7 @@ - + A glomerular basement membrane that is part of a pronephros. TAO:0005313 ZFA:0005313 @@ -478024,14 +478014,14 @@ UBERON:0007307 pronephric glomerular basement membrane - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -478211,7 +478201,7 @@ - + @@ -478240,14 +478230,14 @@ internal pudendal artery http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1244.png - + - + FMA-abduced-lr @@ -478309,8 +478299,8 @@ - - + + @@ -478331,24 +478321,24 @@ deep external pudendal artery http://upload.wikimedia.org/wikipedia/commons/4/43/Gray549.png - + - + - + FMA - + FMA @@ -478397,7 +478387,7 @@ - + @@ -478426,14 +478416,14 @@ superficial external pudendal artery http://upload.wikimedia.org/wikipedia/commons/4/43/Gray549.png - + - + FMA @@ -478658,7 +478648,7 @@ - + @@ -478704,7 +478694,7 @@ pancreatic duct http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1100.png - + @@ -478717,7 +478707,7 @@ - + MA @@ -479377,7 +479367,7 @@ - + @@ -479415,7 +479405,7 @@ proventriculus - + @@ -479428,7 +479418,7 @@ - + Wikipedia @@ -480010,7 +480000,7 @@ - + @@ -480037,14 +480027,14 @@ outer epithelium - + - + Wikipedia:Epidermis_(zoology) @@ -480683,8 +480673,8 @@ - - + + Midline nuclei found in the midbrain, includes the dorsal raphe nucleus and the rostral linear nucleus of raphe. TODO - check. note BTO class is placed here as it is placed in hindbrain @@ -480706,24 +480696,24 @@ UBERON:0007412 midbrain raphe nuclei - + - + - + NIFSTD - + Wikipedia @@ -481089,12 +481079,12 @@ - + - + A neural decussation that is part of a diencephalon. FMA:62446 diencephalon decussation @@ -481102,7 +481092,7 @@ UBERON:0007425 decussation of diencephalon - + @@ -481115,7 +481105,7 @@ - + Obol @@ -481138,7 +481128,7 @@ - + The stratum intermedium in a developing tooth is a layer of two or three cells between the inner enamel epithelium and the newly forming cells of the stellate reticulum. It first appears during the early bell stage of tooth development, at around the 14th week of intrauterine life (in humans). The stratum intermedium has a notably high alkaline phosphatase activity. This layer, along with the inner enamel epithelium, is responsible for the tooth enamel formation. It is a part of the dental (enamel) organ. stratum intermedium BTO:0005009 @@ -481149,14 +481139,14 @@ UBERON:0007440 stratum intermedium of tooth - + - + BTO @@ -481476,7 +481466,7 @@ - + A collection of connected epithelial tubes with a single portal. AEO:0000117 EHDAA2:0003117 @@ -481485,7 +481475,7 @@ UBERON:0007501 arborizing epithelial duct system - + @@ -481498,7 +481488,7 @@ - + AEO @@ -481521,7 +481511,7 @@ - + A complex of interlinking epithelial tubules. AEO:0000118 EHDAA2:0003118 @@ -481529,7 +481519,7 @@ UBERON:0007502 epithelial plexus - + @@ -481542,7 +481532,7 @@ - + AEO @@ -481671,7 +481661,7 @@ - + Mesenchyme with little extracellular matrix. AEO:0000146 EHDAA2:0003146 @@ -481679,7 +481669,7 @@ UBERON:0007524 dense mesenchyme tissue - + @@ -481692,7 +481682,7 @@ - + AEO @@ -481708,8 +481698,8 @@ - - + + Mesenchyme whose cells are embedded in obvious amounts of extracellular matrix. AEO:0000151 EHDAA2:0003151 @@ -481717,11 +481707,11 @@ UBERON:0007529 loose mesenchyme tissue - + - + @@ -481734,13 +481724,13 @@ - + AEO - + AEO @@ -481917,7 +481907,7 @@ - + Part of the regeneration epithelium closest to the fin.[TAO] TAO:0005148 @@ -481928,7 +481918,7 @@ UBERON:0007574 apical epidermal cap - + @@ -481941,7 +481931,7 @@ - + ZFA @@ -482328,9 +482318,9 @@ - - - + + + A muscle on the back of the forearm that extends the fingers and wrist. BTO:0001343 EMAPA:36191 @@ -482348,15 +482338,15 @@ extensor digitorum communis http://upload.wikimedia.org/wikipedia/commons/e/e9/Extensor_digitorum_muscle.png - + - + - + @@ -482369,20 +482359,20 @@ - + extensor expansion of middle and distal phalanges of the 2nd 3rd 4th and 5th fingers dbpedia - + dbpedia - + dbpedia @@ -482418,7 +482408,7 @@ - + EMAPA:36192 MA:0002294 @@ -482430,7 +482420,7 @@ Origin distal to extensor digitorum communis. The part of this muscle that gives a tendon to the 5th digit is comparable to the extensor digiti quinti proprius of the human [ISBN:9780716717553] extensor digitorum lateralis muscle - + @@ -482443,7 +482433,7 @@ - + ISBN:9780716717553 @@ -482471,8 +482461,8 @@ - - + + The extensor minimi digiti (extensor digiti quinti proprius) is a slender muscle of the forearm, placed on the ulnar side of the Extensor digitorum communis, with which it is generally connected. It arises from the common Extensor tendon by a thin tendinous slip, from the intermuscular septa between it and the adjacent muscles. Its tendon runs through a compartment of the dorsal carpal ligament behind the distal radio-ulnar joint, then divides into two as it crosses the manus, and finally joins the expansion of the Extensor digitorum communis tendon on the dorsum of the first phalanx of the little finger[WP]. FMA:38503 @@ -482489,11 +482479,11 @@ extensor digiti minimi muscle http://upload.wikimedia.org/wikipedia/commons/1/15/Gray424.png - + - + @@ -482506,14 +482496,14 @@ - + the anterior portion of the lateral epicondyle of the humerus dbpedia - + at the extensor expansion located at the base of the proximal phalanx of digit V on the dorsal side dbpedia @@ -482610,7 +482600,7 @@ - + @@ -482630,14 +482620,14 @@ UBERON:0007616 layer of synovial tissue - + - + BTO @@ -482758,12 +482748,12 @@ - + - + A synovial cavity of joint that is part of a hip joint. EMAPA:19021 FMA:9701 @@ -482771,14 +482761,14 @@ UBERON:0007618 synovial cavity of hip joint - + - + FMA @@ -482847,7 +482837,7 @@ - + @@ -482863,14 +482853,14 @@ pecten oculi https://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Birdeye.jpg/700px-Birdeye.jpg - + - + cjm @@ -482973,7 +482963,7 @@ - + @@ -482991,14 +482981,14 @@ UBERON:0007626 subparaventricular zone - + - + MA @@ -483044,10 +483034,10 @@ - - - - + + + + A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of nine components of the anterior nuclei of stria terminalis in the Functional CNS Model- Rat ( Swanson-2004 ). BAMS:MA @@ -483061,44 +483051,44 @@ the magnocellular nucleus projects to virtually all known major parts of the brain network that controls pelvic functions, including micturition, defecation, and penile erection, as well as to brain networks controlling nutrient and body water homeostasis. This and other evidence suggests that the magnocellular nucleus is part of a corticostriatopallidal differentiation modulating and coordinating pelvic functions with the maintenance of nutrient and body water homeostasis[PMID:16304682] magnocellular nucleus of stria terminalis - + - + - + - + - + MA - + PMID:16304682 - + PMID:16304682 - + PMID:16304682 @@ -483132,7 +483122,7 @@ - + The lateral septal area; largest nuclear mass in this region, plays a pivotal role in various physiological processes, such as aggression, emotion, thermoregulation, water and food intake and sexual behaviour. BAMS:LSX @@ -483148,7 +483138,7 @@ UBERON:0007628 lateral septal complex - + @@ -483161,7 +483151,7 @@ - + ABA @@ -483240,7 +483230,7 @@ - + Part of septal nuclear complex. In the human, it refers to the most caudal of scattered clusters of neurons in the septum pellucidum that extend, on the underside of the corpus callosum, from the level of the medial septal nucleus to the CA fields ( Crosby-1962 ). In the rat it is associated with the lateral septal nucleus throughout its rostro-caudal course toward the CA fields ( Swanson-1998. Adapted from Brain Info. @@ -483256,14 +483246,14 @@ UBERON:0007630 septohippocampal nucleus - + - + MA-modified @@ -483291,7 +483281,7 @@ - + BAMS:AOBgl BAMS:GlA BAMS:gl @@ -483307,14 +483297,14 @@ UBERON:0007631 accessory olfactory bulb glomerular layer - + - + ABA @@ -483343,7 +483333,7 @@ - + @@ -483367,7 +483357,7 @@ UBERON:0007632 Barrington's nucleus - + @@ -483380,7 +483370,7 @@ - + MA @@ -483645,7 +483635,7 @@ - + A nucleus of the parabrachial area, which in the human brain is a horseshoe-shaped strip of gray matter comprising the Kölliker-Fuse nucleus, the lateral parabrachial nucleus and the medial parabrachial nucleus. @@ -483671,7 +483661,7 @@ parabrachial nucleus - + @@ -483684,7 +483674,7 @@ - + MA @@ -483863,7 +483853,7 @@ - + @@ -483894,14 +483884,14 @@ UBERON:0007639 hippocampus alveus - + - + NIFSTD @@ -484075,7 +484065,7 @@ - + @@ -484101,7 +484091,7 @@ trigeminal nuclear complex http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png - + @@ -484114,7 +484104,7 @@ - + FMA @@ -484370,8 +484360,8 @@ - - + + @@ -484392,24 +484382,24 @@ future meninx - + - + - + EHDAA2 - + ISBN:0073040584 @@ -484454,7 +484444,7 @@ - + @@ -484468,14 +484458,14 @@ UBERON:0007646 endomeninx - + - + ISBN:9781607950325 @@ -484502,7 +484492,7 @@ - + @@ -484517,14 +484507,14 @@ UBERON:0007647 ectomeninx - + - + ISBN:9781607950325 @@ -484546,8 +484536,8 @@ - - + + The junction between the esophagus and the stomach epithelium. compare with gastroesophageal sphincter BTO:0004364 @@ -484567,24 +484557,24 @@ UBERON:0007650 esophagogastric junction - + - + - + MESH - + tFD @@ -484702,7 +484692,7 @@ - + Developing nephron where the developing glomerular capsule has been invaded by a glomerular capillary loop called the glomerular tuft. TODO EMAPA:28506 @@ -484713,7 +484703,7 @@ UBERON:0007653 capillary loop nephron - + @@ -484726,7 +484716,7 @@ - + ZFA @@ -484754,7 +484744,7 @@ - + @@ -484768,7 +484758,7 @@ UBERON:0007654 maturing nephron - + @@ -484781,7 +484771,7 @@ - + EMAPA @@ -484797,7 +484787,7 @@ - + The lateral recess is a projection of the fourth ventricle which extends into the inferior cerebellar peduncle of the brainstem. The lateral aperture, an opening in each extremity of the lateral recess, provides a conduit for cerebrospinal fluid to flow from the brain's ventricular system into the subarachnoid space. lateral recess @@ -484819,7 +484809,7 @@ lateral recess of fourth ventricle http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png - + @@ -484832,7 +484822,7 @@ - + EMAPA @@ -484882,8 +484872,8 @@ - - + + The anular ligament (orbicular ligament) is a strong band of fibers, which encircles the head of the radius (bone), and retains it in contact with the radial notch of the ulna. anular ligament EMAPA:19322 @@ -484897,24 +484887,24 @@ UBERON:0007657 anular ligament of radius - + - + - + FMA - + FMA @@ -485012,7 +485002,7 @@ - + Cranial neural crest that is part of the facial region. We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...).[well established][VHOG] EMAPA:16311 @@ -485023,7 +485013,7 @@ UBERON:0007681 facial neural crest - + @@ -485036,7 +485026,7 @@ - + EMAPA @@ -485262,7 +485252,7 @@ - + @@ -485277,14 +485267,14 @@ UBERON:0007689 thyroid diverticulum - + - + VHOG @@ -485316,7 +485306,7 @@ - + EFO:0003626 EHDAA2:0001457 EHDAA:962 @@ -485333,14 +485323,14 @@ early pharyngeal endoderm http://dev.biologists.org/content/128/22/4573.full - + - + cjm @@ -485371,13 +485361,13 @@ - + - + @@ -485396,7 +485386,7 @@ gustatory pore https://upload.wikimedia.org/wikipedia/commons/0/0e/Taste_bud.svg - + @@ -485409,7 +485399,7 @@ - + FMA @@ -485499,8 +485489,8 @@ - - + + The caroticotympanic branch (tympanic branch) is small; it enters the tympanic cavity through a minute foramen in the carotid canal, and anastomoses with the anterior tympanic branch of the internal maxillary, and with the stylomastoid artery. FMA:49828 @@ -485514,24 +485504,24 @@ caroticotympanic artery - + - + - + http://www.ajnr.org/cgi/content/full/21/3/572 - + FMA @@ -485584,7 +485574,7 @@ - + An axon tract that is part of a spinal cord. FMA:75683 NCIT:C12995 @@ -485594,14 +485584,14 @@ UBERON:0007699 tract of spinal cord - + - + cjm @@ -485646,7 +485636,7 @@ - + An axon tract that is part of a brain. the NIFSTD class 'nerve tract' is classified under 'regional part of brain', so it may seem like it belongs here, but actually includes spinal cord tracts FMA:83848 @@ -485656,14 +485646,14 @@ UBERON:0007702 tract of brain - + - + cjm @@ -485743,7 +485733,7 @@ - + @@ -485763,14 +485753,14 @@ UBERON:0007707 superior cerebellar peduncle of midbrain - + - + NIF @@ -485831,7 +485821,7 @@ - + FMA:72495 most likely denotes this class rather than the more generic parent, due to the part of relationship to pontine tegmentum. SCPP BAMS:scpp @@ -485848,14 +485838,14 @@ superior cerebellar peduncle of pons - + - + FMA @@ -486316,7 +486306,7 @@ - + @@ -486343,14 +486333,14 @@ interphalangeal joint of pes - + - + two in series @@ -486422,7 +486412,7 @@ - + @@ -486451,14 +486441,14 @@ interphalangeal joint of manus - + - + two in series @@ -486980,12 +486970,12 @@ - + - + @@ -487004,14 +486994,14 @@ UBERON:0007729 interphalangeal joint of manual digit 2 - + - + EMAPA @@ -487294,7 +487284,7 @@ - + @@ -487315,14 +487305,14 @@ metacarpophalangeal joint of manual digit 1 - + - + FMA @@ -487380,7 +487370,7 @@ - + @@ -487401,14 +487391,14 @@ UBERON:0007738 metacarpophalangeal joint of manual digit 2 - + - + FMA @@ -487472,7 +487462,7 @@ - + @@ -487495,14 +487485,14 @@ metacarpophalangeal joint of manual digit 3 - + - + FMA @@ -487573,7 +487563,7 @@ - + @@ -487596,14 +487586,14 @@ metacarpophalangeal joint of manual digit 4 - + - + FMA @@ -487674,7 +487664,7 @@ - + @@ -487696,14 +487686,14 @@ metacarpophalangeal joint of manual digit 5 - + - + FMA @@ -487767,7 +487757,7 @@ - + @@ -487791,14 +487781,14 @@ metatarsophalangeal joint of pedal digit 1 - + - + FMA @@ -487868,7 +487858,7 @@ - + @@ -487888,14 +487878,14 @@ metatarsophalangeal joint of pedal digit 2 - + - + FMA @@ -487953,7 +487943,7 @@ - + @@ -487973,14 +487963,14 @@ metatarsophalangeal joint of pedal digit 3 - + - + FMA @@ -488038,7 +488028,7 @@ - + @@ -488058,14 +488048,14 @@ metatarsophalangeal joint of pedal digit 4 - + - + FMA @@ -488123,7 +488113,7 @@ - + @@ -488144,14 +488134,14 @@ metatarsophalangeal joint of pedal digit 5 - + - + FMA @@ -488200,7 +488190,7 @@ - + The culmen is the portion of the anterior vermis adjacent to the primary fissure of cerebellum. The culmen and the anterior parts of the quadrangular lobules form the lobus culminis[WP]. The culmen lobule (lobules IV/V) is a single structure in humans, but it is divided by the intraculminate fissure in many rodents. In some mouse strains such as SLJ/J, the intraculminate fissure is absent, in some strains such as DBA/2J it is present, and other strains (C57BL/10J and BALB/cJ) exhibit considerable variablility (PMID: 1953602).[MP] ABA splits culmen into IV and V and IV-V @@ -488222,7 +488212,7 @@ UBERON:0007763 cerebellum vermis culmen - + @@ -488235,7 +488225,7 @@ - + FMA @@ -488474,7 +488464,7 @@ - + BAMS:MPA BAMS:MPO @@ -488490,14 +488480,14 @@ medial preoptic region - + - + MA @@ -488885,12 +488875,12 @@ - + - + An endothelium that is part of a umbilical vein. BTO:0001416 CALOHA:TS-1081 @@ -488898,14 +488888,14 @@ UBERON:0007777 umbilical vein endothelium - + - + BTO @@ -488924,26 +488914,26 @@ - + - + An endothelium that is part of a umbilical artery. BTO:0000857 uberon UBERON:0007778 umbilical artery endothelium - + - + BTO @@ -489117,7 +489107,7 @@ - + The serous fluid which accumulates in the peritoneal cavity in ascites. TODO - move to pathological anatomical entity ontology BTO:0000091 @@ -489129,14 +489119,14 @@ UBERON:0007795 ascitic fluid - + - + BTO @@ -489164,7 +489154,7 @@ - + Anatomical system that consists of all blood and lymph vessels. consider merging with vasculature @@ -489183,14 +489173,14 @@ vascular system - + - + MA @@ -489289,7 +489279,7 @@ - + Pygostyle refers to a number of the final few caudal vertebrae fused into a single ossification, supporting the tail feathers and musculature. In modern birds, the rectrices attach to these[WP]. SCTID:416894001 Wikipedia:Pygostyle @@ -489299,14 +489289,14 @@ pygostyle - + - + Wikipedia @@ -489333,8 +489323,8 @@ - - + + @@ -489366,11 +489356,11 @@ The gland is found near the base of the tail and is shaped into two symmetric parts. The oil of each part of the gland is secreted through the surface of the skin through a grease nipple-like nub. A bird will typically transfer this oil to its feathers by rubbing its head against the oil and then around the rest of the body. Tailward areas are usually preened utilizing the beak. Not all birds have a uropygial gland. Exceptions include the emu, ostrich, and bustards. These typically find other means to stay clean and dry, such as taking a dust bath uropygial gland - + - + @@ -489383,13 +489373,13 @@ - + BTO - + Wikipedia @@ -489540,7 +489530,7 @@ - + A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord. TODO - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels BTO:0004705 @@ -489550,7 +489540,7 @@ UBERON:0007806 connecting stalk - + @@ -489563,7 +489553,7 @@ - + EHDAA2 @@ -489602,7 +489592,7 @@ - + A vasculature that is part of a connecting stalk. EHDAA2:0000313 connecting stalk blood vessels @@ -489612,14 +489602,14 @@ UBERON:0007807 connecting stalk vasculature - + - + EHDAA2 @@ -489699,9 +489689,9 @@ - - - + + + The superficial layer (fascia of Camper) is a thick superficial layer of the anterior abdominal wall. It is areolar in texture, and contains in its meshes a varying quantity of adipose tissue. It is found superficial to Scarpa's fascia. FMA:19922 Wikipedia:Fascia_of_Camper @@ -489720,34 +489710,34 @@ fascia of Camper http://upload.wikimedia.org/wikipedia/commons/2/28/Gray393.png - + - + - + - + FMA - + Wikipedia - + Wikipedia @@ -489861,6 +489851,7 @@ SCTID:361355005 UMLS:C0460004 WikipediaCategory:Head_and_neck + ZFA:0001114 galen:HeadAndNeck uberon cephalic area @@ -489938,7 +489929,7 @@ - + @@ -489973,14 +489964,14 @@ post-anal tail - + - + possible exception in hemichordates cjm @@ -490445,7 +490436,7 @@ - + Mesentery that is located in the peritoneum. FMA:20570 TAO:0005129 @@ -490455,14 +490446,14 @@ UBERON:0007826 peritoneal mesentery - + - + FMA @@ -490900,7 +490891,7 @@ - + @@ -490943,14 +490934,14 @@ pelvic girdle skeleton http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray242.png - + - + PMID:21455939 @@ -491036,8 +491027,8 @@ - - + + The organ of balance composed of three long bony tubes of the labyrinth. consider adding FMA:60186 ! Semicircular canal here, as it is part of the bony labyrinth MA:0000250 @@ -491047,11 +491038,11 @@ osseus semicircular canal - + - + @@ -491064,13 +491055,13 @@ - + MA - + MA @@ -491337,7 +491328,7 @@ - + @@ -491369,14 +491360,14 @@ UBERON:0007841 furcula - + - + http://people.eku.edu/ritchisong/342notes5.htm @@ -491466,7 +491457,7 @@ - + A posterior projection from proximal rib segments. Offers attachment sites for respiratory and shoulder muscles as well as adding structural support to the trunk skeleton[Kardong 2012]. @@ -491480,14 +491471,14 @@ WP: Although bony uncinate processes are unique to birds, cartilaginous uncinate processes are present in crocodiles. The uncinate process has also been reported in Sphenodon, Caudipteryx, oviraptorids, Confuciusornis and Chaoyangia however it does not occur in Archaeopteryx uncinate process of ribs - + - + ISBN:0073040584 @@ -491538,8 +491529,8 @@ - - + + @@ -491564,11 +491555,11 @@ cartilage element - + - + @@ -491581,13 +491572,13 @@ - + VSAO - + VSAO @@ -491794,8 +491785,8 @@ - - + + Fibrous connective tissue that surrounds the notochord; includes a layer of elastin. Portion of connective tissue which surrounds the notochord.[TAO] relationship type change: part_of notochord (VSAO:0000032) CHANGED TO: surrounds notochord (UBERON:0002328)[VSAO] @@ -491815,11 +491806,11 @@ Derived from cells surrounding the notochord (possibly the slerotome). Disparate from (not derived from) notochord. perichordal tissue - + - + @@ -491832,13 +491823,13 @@ - + VSAO-modified - + ISBN:0073040584 @@ -491907,12 +491898,12 @@ - + - + A bone that is part of a craniocervical region. EMAPA:37245 MA:0000569 @@ -491922,7 +491913,7 @@ UBERON:0007914 bone of craniocervical region - + @@ -491935,7 +491926,7 @@ - + MA @@ -492433,7 +492424,7 @@ - + FMA has multiple 'Articular surface of X' classes, with no way to group them EMAPA:37620 MA:0001518 @@ -492441,14 +492432,14 @@ UBERON:0008124 joint articular surface - + - + MA @@ -492470,7 +492461,7 @@ - + EMAPA:35415 MA:0002849 uberon @@ -492478,14 +492469,14 @@ see also VSAO:0000098 hypertrophic cartilage zone - + - + MA @@ -492843,7 +492834,7 @@ - + @@ -492865,14 +492856,14 @@ nail plate https://upload.wikimedia.org/wikipedia/commons/9/9f/Fingernail_label.jpg - + - + MA @@ -492903,8 +492894,8 @@ - - + + A subdivision of the face that is the anteriormost part of the lower jaw region. Surface structure that is the anteriormost region of the lower jaw.[TAO] mental @@ -492929,24 +492920,24 @@ chin http://upload.wikimedia.org/wikipedia/commons/6/60/Gray1195.png - + - + - + MESH - + FMA @@ -493011,7 +493002,7 @@ - + @@ -493036,14 +493027,14 @@ forehead http://upload.wikimedia.org/wikipedia/commons/8/83/Forhead_01_ies.jpg - + - + FMA @@ -493153,7 +493144,7 @@ - + todo - consider obsoletion in MA, this includes the femur. i.e. pelvic girdle bone or femur; note that this makes the ilium etc in MA hindlimb bones. in MA this is a hindlimb bone EMAPA:37308 @@ -493167,14 +493158,14 @@ bone of hip region - + - + MA @@ -493271,12 +493262,12 @@ - + - + Musculature system of the pharyngeal and head regions. in MA this is restricted to skeletal muscles EMAPA:37259 @@ -493290,7 +493281,7 @@ UBERON:0008229 craniocervical region musculature - + @@ -493303,7 +493294,7 @@ - + MA @@ -493393,8 +493384,8 @@ - - + + Subdivision of thorax, which in humans is the posterior part of the thorax and is demarcated from the chest by the external surface of the posterolateral part of the rib cage and the anterior surface of the thoracic vertebral column; together with the chest, it constitutes the thorax. EMAPA:37234 FMA:24217 @@ -493410,25 +493401,25 @@ UBERON:0008231 dorsal thoracic segment of trunk - + - + - + FMA MA - + FMA @@ -493489,13 +493480,13 @@ - + - + A muscle of back that is part of a lower back. EMAPA:37262 MA:0000502 @@ -493504,7 +493495,7 @@ UBERON:0008242 lower back muscle - + @@ -493517,7 +493508,7 @@ - + MA @@ -493542,13 +493533,13 @@ - + - + A muscle of back that is part of a dorsal thoracic segment of trunk. EMAPA:37261 MA:0000508 @@ -493557,7 +493548,7 @@ UBERON:0008243 upper back muscle - + @@ -493570,7 +493561,7 @@ - + MA @@ -493807,7 +493798,7 @@ - + @@ -493825,14 +493816,14 @@ UBERON:0008252 tube foot ampulla - + - + BTO @@ -493866,7 +493857,7 @@ - + @@ -493884,14 +493875,14 @@ UBERON:0008253 Aristotle's lantern - + - + BTO @@ -494339,14 +494330,14 @@ - + - - + + The fibrous connective tissue that surrounds the root of a tooth, separating it from and attaching it to the alveolar bone. It extends from the base of the gingival mucosa to the fundus of the bony socket, and its main function is to hold the tooth in its socket[BTO]. The collagen fibers, running from the cementum to the alveolar bone, that suspend a tooth in its socket; they include apical, oblique, horizontal, and alveolar crest fibers, indicating that the orientation of the fibers varies at different levels[http://www.drugs.com/dict/desmodentium.html]. The fibrous connective tissue that surrounds the root of a tooth, separating it from and attaching it to the alveolar bone. It extends from the base of the gingival mucosa to the fundus of the bony socket, and its main function is to hold the tooth in its socket[BTO]. It consist of cells, extracellular compartment of fibers. The cells are fibroblast, epithelial, undifferentiated mesenchymal cells, bone and cementum cells. The extracellular compartment consists of collagen fibers bundles embedded in ground substance. The PDL substance has been estimated to be 70% water and is thought to have a significant effect on the tooth's ability to withstand stress loads[WP][BTO:0001020, Wikipedia:Periodontal_fiber, https://github.com/obophenotype/uberon/issues/21]. @@ -494386,11 +494377,11 @@ https://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg - + - + @@ -494403,13 +494394,13 @@ - + BTO - + PMID:19767574 Wikipedia:Dental_follicle @@ -495576,7 +495567,7 @@ - + @@ -495590,14 +495581,14 @@ UBERON:0008304 inner chondrogenic layer of perichondrium - + - + BTO @@ -495613,7 +495604,7 @@ - + The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The fibrous layer contains fibroblasts, which produce collagenous fibers. BTO:0005091 Wikipedia:The_Free_Encyclopedia @@ -495621,14 +495612,14 @@ UBERON:0008305 outer fibrous layer of perichondrium - + - + BTO @@ -495739,14 +495730,14 @@ - + - + A short vessel of large caliber which arises from the internal pudendal between the two layers of fascia of the urogenital diaphragm; it passes medialward, pierces the inferior fascia of the urogenital diaphragm, and gives off branches which ramify in the bulb of the urethra and in the posterior part of the corpus spongiosum. It gives off a small branch to the bulbo-urethral gland. BTO:0005087 FMA:20864 @@ -495759,24 +495750,24 @@ UBERON:0008311 penile bulb artery - + - + - + BTO - + FMA @@ -495812,7 +495803,7 @@ - + @@ -495839,7 +495830,7 @@ common penile artery - + @@ -495852,7 +495843,7 @@ - + BTO @@ -495896,7 +495887,7 @@ - + @@ -495909,7 +495900,7 @@ - + The deep artery of the penis (artery to the corpus cavernosum), one of the terminal branches of the internal pudendal, arises from that vessel while it is situated between the two fascia of the urogenital diaphragm (deep perineal pouch). It pierces the inferior fascia, and, entering the crus penis obliquely, runs forward in the center of the corpus cavernosum penis, to which its branches are distributed. BTO:0005086 @@ -495927,24 +495918,24 @@ deep artery of penis http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray543.png - + - + - + BTO - + FMA @@ -496007,7 +495998,7 @@ - + @@ -496020,7 +496011,7 @@ - + The deep artery of clitoris is a branch of the internal pudendal artery. FMA:20870 @@ -496032,24 +496023,24 @@ deep artery of clitoris - + - + - + FMA - + FMA @@ -496073,8 +496064,8 @@ - - + + The dorsal artery of clitoris is a branch of the internal pudendal artery. FMA:20867 @@ -496085,11 +496076,11 @@ dorsal artery of clitoris - + - + @@ -496102,13 +496093,13 @@ - + FMA - + FMA @@ -496150,7 +496141,7 @@ - + @@ -496176,7 +496167,7 @@ vestibule of vagina http://upload.wikimedia.org/wikipedia/commons/f/f3/Scheidenvorhof.jpg - + @@ -496189,7 +496180,7 @@ - + BTO @@ -496329,7 +496320,7 @@ - + The white core of the inferior olivary nucleus of the medulla oblongata, most prominent medially. BAMS:hio BTO:0002300 @@ -496347,7 +496338,7 @@ UBERON:0008333 hilum of inferior olivary complex - + @@ -496360,7 +496351,7 @@ - + BTO @@ -496443,7 +496434,7 @@ - + A longitudinal sulcus on the anterior surface of the medulla oblongata, lateral to the pyramid, from which emerge the fibers of the hypoglossal nerve. BAMS:vls BTO:0002777 @@ -496466,7 +496457,7 @@ UBERON:0008335 ventrolateral sulcus of medulla oblongata - + @@ -496479,7 +496470,7 @@ - + BTO @@ -496836,7 +496827,7 @@ - + A saddle-shaped area that includes the nasal root and the lateral aspects of the nose. It lies between the glabella and the inferior boundary of the nasal bone, and extends laterally to the inner canth[WP]. MA:0002874 Wikipedia:Nasal_bridge @@ -496845,14 +496836,14 @@ nasal bridge - + - + MA @@ -496870,7 +496861,7 @@ - + The tissue that links the nasal tip to the nasal base, and separates the nares. It is the inferior margin of the nasal septum[EoM]. EMAPA:37832 FMA:59725 @@ -496883,14 +496874,14 @@ columella nasi - + - + FMA @@ -497037,7 +497028,7 @@ - + An epithelium that is part of a ileum. EMAPA:35423 @@ -497050,14 +497041,14 @@ ileal epithelium - + - + FMA @@ -497090,7 +497081,7 @@ - + An epithelium that is part of a duodenum. CALOHA:TS-2087 @@ -497104,14 +497095,14 @@ duodenal epithelium - + - + FMA @@ -497304,7 +497295,7 @@ - + @@ -497313,7 +497304,7 @@ - + An epithelium that is part of a distal tubule. See https://github.com/obophenotype/uberon/issues/1305 BTO:0003948 @@ -497322,14 +497313,14 @@ UBERON:0008408 distal tubular epithelium - + - + BTO @@ -497354,26 +497345,26 @@ - + - + An epithelium that is part of a buccal mucosa. BTO:0004803 uberon UBERON:0008420 buccal epithelium - + - + BTO @@ -497565,7 +497556,7 @@ - + A transverse foramen that is part of a vertebral bone 2. FMA:23999 SCTID:281221002 @@ -497574,14 +497565,14 @@ UBERON:0008427 transverse foramen of axis - + - + FMA-abduced-lr @@ -497603,7 +497594,7 @@ - + Main, posterior part of hyoglossus muscle (vs. chondroglossus) arising from the greater horn of the hyoid bone. FMA:46720 ceratoglossus muscle @@ -497612,14 +497603,14 @@ UBERON:0008428 ceratoglossus - + - + FMA @@ -498362,10 +498353,10 @@ - - - - + + + + A muscle in the forearm and hand that flexes the thumb. It lies in the same plane as the flexor digitorum profundus. Modern humans are unique among hominids in having a flexor pollicis longus (FPL) muscle belly that is separate from that of the flexor digitorum profundus (FDP). While the FPL is not a separate muscle belly in extant great apes, a distinct tendon from the FDP belly might be present. In some individuals this tendon tend to act more like a ligament which restricts extension of the interphalangeal joint of the thumb. In orangutans there is a tendon similar in insertion and function to the FPL in humans, but which has an intrinsic origin on the oblique head of the adductor pollicis @@ -498382,46 +498373,46 @@ flexor pollicis longus muscle http://upload.wikimedia.org/wikipedia/commons/7/72/FPL.png - + - + - + - + - + Wikipedia - + The middle 2/4 of the volar surface of the radius and the adjacent interosseus membrane. dbpedia - + The base of the distal phalanx of the thumb dbpedia - + dbpedia @@ -498486,7 +498477,7 @@ - + Intertarsal articulations are the joints of the tarsus. The specific intertarsal articulations are: Talocalcaneal articulation Talocalcaneonavicular articulation Calcaneocuboid articulation Cuneonavicular articulation Cuboideonavicular articulation Intercuneiform articulation Cuneocuboid articulation. EMAPA:37762 FMA:44281 @@ -498512,14 +498503,14 @@ intertarsal joint http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray360.png - + - + two adjacent tarsals @@ -498667,8 +498658,8 @@ - - + + A powerful flexor of the thigh at the hip joint (psoas major) and a weak flexor of the trunk and lumbar spinal column (psoas minor). Psoas is derived from the Greek 'psoa', the plural meaning 'muscles of the loin'. It is a common site of infection manifesting as abscess (PSOAS ABSCESS). The psoas muscles and their fibers are also used frequently in experiments in muscle physiology. BTO:0001140 EMAPA:36157 @@ -498684,11 +498675,11 @@ UBERON:0008450 psoas muscle - + - + @@ -498701,13 +498692,13 @@ - + dbpedia-abduced - + dbpedia-abduced @@ -498750,7 +498741,7 @@ - + A muscle situated immediately behind the upper part of the Longus capitis that arises from the anterior surface of the lateral mass of the atlas, and from the root of its transverse process that inserts into the inferior surface of the basilar part of the occipital bone immediately in front of the foramen magnum. Flexion of neck at atlanto-occipital joint FMA:46312 @@ -498771,7 +498762,7 @@ rectus capitis anterior http://upload.wikimedia.org/wikipedia/commons/6/6f/Rectus_capitis_anterior_muscle.PNG - + @@ -498784,7 +498775,7 @@ - + basilar part Wikipedia @@ -498863,9 +498854,9 @@ - - - + + + A muscle that arises by a pointed tendon from the spinous process of the axis and inserts into the lateral part of the inferior nuchal line of the occipital bone and the surface of the bone immediately below the line. extend and rotate the atlanto-occipital joint @@ -498886,15 +498877,15 @@ rectus capitis posterior major http://upload.wikimedia.org/wikipedia/commons/d/dd/Rectus_capitis_posterior_major_muscle.PNG - + - + - + @@ -498907,21 +498898,21 @@ - + Dorsal ramus of C1 dbpedia - + Spinous process of the axis dbpedia - + Inferior nuchal line of the occipital bone dbpedia @@ -498988,9 +498979,9 @@ - - - + + + A muscle that arise from the tubercle on the posterior arch of the and is inserted into the medial part of the inferior nuchal line of the occipital bone and the surface between it and the foramen magnum, and also takes some attachment to the spinal dura. extends the head at the neck FMA:32526 @@ -499009,15 +499000,15 @@ rectus capitis posterior minor http://upload.wikimedia.org/wikipedia/commons/e/ed/Rectus_capitis_posterior_minor.png - + - + - + @@ -499030,21 +499021,21 @@ - + suboccpital nerve dbpedia - + the tubercle on the posterior arch of the atlas dbpedia - + the medial part of the inferior nuchal line of the occipital bone and the surface between it and the foramen magnum dbpedia @@ -499537,7 +499528,7 @@ - + The Abductor hallucis lies along the medial border of the pes and covers the origins of the plantar vessels and nerves. It arises from the medial process of the tuberosity of the calcaneus, from the laciniate ligament, from the plantar aponeurosis, and from the intermuscular septum between it and the Flexor digitorum brevis. The fibers end in a tendon, which is inserted, together with the medial tendon of the Flexor hallucis brevis, into the tibial side of the base of the first phalanx of the great toe. FMA:37448 @@ -499551,14 +499542,14 @@ abductor hallucis muscle https://upload.wikimedia.org/wikipedia/commons/b/bf/Abductor_hallucis.png - + - + tuberosity of the calcaneus dbpedia @@ -499589,10 +499580,10 @@ - - - - + + + + The abductor pollicis brevis is a muscle in the manus that functions as an abductor of the thumb. FMA:37373 @@ -499607,47 +499598,47 @@ abductor pollicis brevis muscle http://upload.wikimedia.org/wikipedia/commons/7/77/Musculusabductorpollicisbrevis.png - + - + - + - + - + Transverse carpal ligament the scaphoid and trapezium dbpedia - + Transverse carpal ligament the scaphoid and trapezium dbpedia - + Radial base of proximal phalanx of thumb and the thumb extensors dbpedia - + dbpedia @@ -499689,8 +499680,8 @@ - - + + @@ -499721,24 +499712,24 @@ cremaster muscle http://upload.wikimedia.org/wikipedia/commons/6/67/Gray1143.png - + - + - + dbpedia - + dbpedia @@ -499801,9 +499792,9 @@ - - - + + + The smallest of the three gluteal muscles, situated immediately beneath the gluteus medius. EMAPA:36230 @@ -499822,15 +499813,15 @@ gluteus minimus http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG - + - + - + @@ -499843,20 +499834,20 @@ - + FMA - + Gluteal surface of ilium under gluteus medius. dbpedia - + Greater trochanter of the femur dbpedia @@ -499980,7 +499971,7 @@ - + The infrahyoid muscles are a group of four pairs of muscles in the anterior part of the neck. (The term infrahyoid refers to the region below to the hyoid bone in the neck. ) Collectively, they are referred to as the strap muscles, because the muscles are long and flat much like a strap. FMA:13338 @@ -499999,14 +499990,14 @@ infrahyoid muscle https://upload.wikimedia.org/wikipedia/commons/4/48/Infrahyoid_muscles.png - + - + dbpedia @@ -500067,8 +500058,8 @@ - - + + The piriformis is a muscle in the gluteal region that originates from the anterior (front) part of the sacrum, the part of the spine in the gluteal region, and from the superior margin of the greater sciatic notch (as well as the sacroiliac joint capsule and the sacrotuberous ligament). It exits the pelvis through the greater sciatic foramen to insert on the greater trochanter of the femur. Its tendon often joins with the tendons of the superior gemellus, inferior gemellus, and obturator internus muscles prior to insertion[WP,modified]. EMAPA:36239 @@ -500086,11 +500077,11 @@ piriformis muscle http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG - + - + @@ -500103,13 +500094,13 @@ - + dbpedia - + dbpedia @@ -500216,7 +500207,7 @@ - + A muscle that arises from the spinous processes of the third to the sixth thoracic vertebrae and inserts into the posterior tubercles of the transverse processes of the upper two or three cervical vertebrae[WP,modified]. Bilaterally: Extend the head & neck, Unilaterally: Lateral flexion to the same side, Rotation to the same side. FMA:22681 @@ -500228,7 +500219,7 @@ splenius cervicis http://upload.wikimedia.org/wikipedia/commons/2/26/Musculus_splenius_cervicis.PNG - + @@ -500241,7 +500232,7 @@ - + transverse processes of C1-C3 dbpedia @@ -500425,7 +500416,7 @@ - + The posterior cricoarytenoid muscles are extremely small, paired muscles that extend from the posterior cricoid cartilage to the arytenoid cartilages in the larynx. By rotating the arytenoid cartilages laterally, these muscles abduct the vocal cords and thereby open the rima glottidis. Their action opposes the lateral cricoarytenoid muscles. The posterior cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X). Paralysis of the posterior cricoarytenoid muscles may lead to asphyxiation as they are the only laryngeal muscles to open the true vocal folds, allowing inspiration and expiration. FMA:46576 @@ -500443,14 +500434,14 @@ posterior crico-arytenoid http://upload.wikimedia.org/wikipedia/commons/9/9d/Musculuscricoarytenoideusposterior.png - + - + dbpedia @@ -500503,7 +500494,7 @@ - + The lateral cricoarytenoid (also anterior cricoarytenoid) muscles extend from the lateral cricoid cartilage to the ipsilateral arytenoid cartilage. By rotating the arytenoid cartilages medially, these muscles adduct the vocal cords and thereby close the rima glottidis, protecting the airway. (Their action is antagonistic to that of the posterior cricoarytenoid muscles. ) The lateral cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X). FMA:46579 @@ -500523,14 +500514,14 @@ lateral crico-arytenoid http://upload.wikimedia.org/wikipedia/commons/3/34/Musculuscricoarytenoideuslateralis.png - + - + dbpedia @@ -500652,9 +500643,9 @@ - - - + + + The Thyroarytenoid is a broad, thin, muscle which lies parallel with and lateral to the vocal fold, and supports the wall of the ventricle and its appendix. It functions in fine tonal control of the vocal cords. FMA:46588 NCIT:C33776 @@ -500679,15 +500670,15 @@ thyro-arytenoid http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png - + - + - + @@ -500700,21 +500691,21 @@ - + recurrent laryngeal branch of the vagus dbpedia - + Inner surface of the thyroid cartilage dbpedia - + Anterior surface of arytenoid cartilage dbpedia @@ -500817,7 +500808,7 @@ - + The vocal muscle is the upper portion of the thyroarytenoid muscle which is primarily involved in producing speech. in FMA this is not placed under thyro-arytenoid but almost all sources consider this to be the case (confirmed with FEED:rd) @@ -500835,7 +500826,7 @@ vocalis muscle http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png - + @@ -500848,7 +500839,7 @@ - + FEED:rd Wikipedia @@ -500891,8 +500882,8 @@ - - + + A muscle of the tongue that consists of a thin stratum of oblique and longitudinal fibers immediately underlying the mucous membrane on the dorsum of the tongue. FMA:46693 SCTID:244790006 @@ -500908,11 +500899,11 @@ superior longitudinal muscle of tongue http://upload.wikimedia.org/wikipedia/commons/3/30/Musculuslongitudinalissuperiorlinguae.png - + - + @@ -500925,13 +500916,13 @@ - + Wikipedia - + edges of the tongue dbpedia @@ -500985,8 +500976,8 @@ - - + + A muscle of the tongue that consists of fibers which arise from the median fibrous septum and pass lateralward to be inserted into the submucous fibrous tissue at the sides of the tongue. EMAPA:18281 FMA:46695 @@ -501007,11 +500998,11 @@ transverse muscle of tongue http://upload.wikimedia.org/wikipedia/commons/1/14/Musculustransversuslinguae.png - + - + @@ -501024,13 +501015,13 @@ - + Wikipedia - + sides of the tongue dbpedia @@ -501096,8 +501087,8 @@ - - + + A muscle of the tongue that is found only at the borders of the forepart of the tongue. Its fibers extend from the upper to the under surface of the organ. EMAPA:18282 FMA:46696 @@ -501120,11 +501111,11 @@ vertical muscle of tongue http://upload.wikimedia.org/wikipedia/commons/d/d8/Gray1020.png - + - + @@ -501137,14 +501128,14 @@ - + Submucosal fibrous layer of dorsum of tongue dbpedia - + Inferior surface borders of tongue dbpedia @@ -501223,9 +501214,9 @@ - - - + + + The levator veli palatini is the elevator muscle of the velum palatinum in the human body. During swallowing, it contracts, elevating the soft palate to help prevent food from entering the nasopharynx. It is innervated via the pharyngeal plexus, primarily by the vagus nerve (CN X). The levator veli palatini (Levator palati) is a thick, rounded muscle situated lateral to the choanC&. It arises from the under surface of the apex of the petrous part of the temporal bone and from the medial lamina of the cartilage of the auditory tube. After passing above the upper concave margin of the Constrictor pharyngis superior it spreads out in the palatine velum, its fibers extending obliquely downward and medially to the middle line, where they blend with those of the opposite side. The levator veli palatini is part of the soft palate that attaches to the cranial base, pharyngotympanic tube and the soft palate and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED] FMA:46727 @@ -501241,15 +501232,15 @@ levator veli palatini http://upload.wikimedia.org/wikipedia/commons/a/a5/Musculuslevatorvelipalatini.png - + - + - + @@ -501262,20 +501253,20 @@ - + FMA-abduced-lr - + Pharyngeal Branch of Vagus dbpedia - + dbpedia @@ -501332,8 +501323,8 @@ - - + + The tensor veli palatini (tensor palati) is a broad, thin, ribbon-like muscle in the head that tenses the soft palate. The tensor veli palatini is a muscle of the soft palate that attaches to the cranial base and pharyngotympanic tube, wraps around the pterygoid hamulus and then attaches to the midline palatal raphe of the soft palate that is innervated by cranial nerve V3.[FEED] @@ -501351,11 +501342,11 @@ tensor veli palatini http://upload.wikimedia.org/wikipedia/commons/3/30/Musculustensorvelipalatini.png - + - + @@ -501368,13 +501359,13 @@ - + FMA-abduced-lr - + medial pterygoid of mandibular nerve dbpedia @@ -501483,7 +501474,7 @@ - + The depressor septi (Depressor alE nasi) arises from the incisive fossa of the maxilla. Its fibers ascend to be inserted into the nasal septum and back part of the alar part of nasalis muscle. It lies between the mucous membrane and muscular structure of the lip. FMA:46777 SCTID:244733006 @@ -501498,7 +501489,7 @@ depressor septi nasi http://upload.wikimedia.org/wikipedia/commons/6/6c/Musculusdepressorseptinasi.PNG - + @@ -501511,7 +501502,7 @@ - + incisive fossa of the maxilla dbpedia @@ -501559,7 +501550,7 @@ - + The Depressor Supercilii is an eye muscle of the human body. The nature of this muscle is in some dispute. Few printed anatomies include it (Netter, et al. ) and many authorities consider it to be part of the orbicularis oculi muscle . On the other hand, many dermatologists, ophthalmologists and plastic surgeons hold that the depressor supercilli is a distinct muscle and has a definite, individual effect on the movement of the eybrow and skin of the glabella. FMA:46798 SCTID:244728007 @@ -501571,7 +501562,7 @@ depressor supercilii http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray379.png - + @@ -501584,7 +501575,7 @@ - + Medial aspect of bony orbit dbpedia @@ -501614,8 +501605,8 @@ - - + + @@ -501635,11 +501626,11 @@ levator labii superioris alaeque nasi http://upload.wikimedia.org/wikipedia/commons/1/1c/Musculuslevatorlabiisuperiorisalaequenasi.png - + - + @@ -501652,13 +501643,13 @@ - + dbpedia - + nostril and upper lip dbpedia @@ -501980,7 +501971,7 @@ - + @@ -502002,7 +501993,7 @@ levator anguli oris - + @@ -502015,7 +502006,7 @@ - + dbpedia @@ -502082,7 +502073,7 @@ - + @@ -502101,8 +502092,8 @@ - - + + A muscle of facial expression, innervated by the facial nerve, attached to the skin of the lower lip and inferior to the lower lip (in humans this region is called the chin or mental region), the orbicularis oris muscle, and the mandible in the symphyseal region. See Diogo et al., 2009; Burrows et al., 2011). @@ -502118,15 +502109,15 @@ mentalis muscle http://upload.wikimedia.org/wikipedia/commons/3/37/Mentalis.png - + - + - + @@ -502139,19 +502130,19 @@ - + FMA-abduced-lr - + dbpedia - + dbpedia @@ -502186,8 +502177,8 @@ - - + + The Depressor anguli oris (Triangularis) arises from the oblique line of the mandible, whence its fibers converge, to be inserted, by a narrow fasciculus, into the angle of the mouth. EMAPA:37842 @@ -502204,11 +502195,11 @@ depressor anguli oris muscle http://upload.wikimedia.org/wikipedia/commons/3/36/Gray381.png - + - + @@ -502221,14 +502212,14 @@ - + tubercle of mandible dbpedia - + modiolus of mouth dbpedia @@ -502717,9 +502708,9 @@ - - - + + + Any of the three pairs of muscles in the lateral neck, namely the scalenus anterior, scalenus medius, and scalenus posterior. They are innervated by the spinal nerves C4-C8[WP]. FMA:64829 NCIT:C33517 @@ -502742,15 +502733,15 @@ scalene muscle http://upload.wikimedia.org/wikipedia/commons/6/6e/Scalenus.png - + - + - + @@ -502763,20 +502754,20 @@ - + dbpedia - + first and second ribs dbpedia - + first and second ribs dbpedia @@ -502988,9 +502979,9 @@ - - - + + + The Subcostales (Infracostales) consist of muscular and aponeurotic fasciculi, which are usually well-developed only in the lower part of the thorax; each originates from the inner surface of one rib, and is inserted into the inner surface of the second or third rib above, near its angle. Their fibers run in the same direction as those of the Intercostales interni. FMA:9759 @@ -503007,15 +502998,15 @@ subcostal muscle - + - + - + @@ -503028,20 +503019,20 @@ - + dbpedia - + inner surface of one rib dbpedia - + inner surface of the second or third rib below near its angle dbpedia @@ -503152,9 +503143,9 @@ - - - + + + The stylohyoid is a pharyngeal arch II muscle that participates in oral/pharygeal behaviors and is innervated by the stylohoid branch of the facial nerve and attaches to the stylohyal and the non-stylohyal part of the hyoid apparatus. The stylohyoid is a pharyngeal arch II muscle that participates in oral/pharygeal behaviors and is innervated by the stylohoid branch of the facial nerve and attaches to the stylohyal.[FEED] @@ -503173,15 +503164,15 @@ stylohyoid muscle http://upload.wikimedia.org/wikipedia/commons/9/94/Musculi_colli_stylohyoideus.svg - + - + - + @@ -503194,19 +503185,19 @@ - + dbpedia - + dbpedia - + greater cornu of hyoid bone dbpedia @@ -503570,7 +503561,7 @@ - + @@ -503600,14 +503591,14 @@ inner cell mass derived hypoblast - + - + Wikipedia @@ -503675,7 +503666,7 @@ - + @@ -503702,14 +503693,14 @@ hypaxial musculature https://github.com/obophenotype/uberon/issues/686 - + - + XAO @@ -503770,7 +503761,7 @@ - + @@ -503798,14 +503789,14 @@ epaxial musculature - + - + XAO @@ -503861,8 +503852,8 @@ - - + + The Subclavius is a small triangular muscle, placed between the clavicle and the first rib. Along with the pectoralis major and pectoralis minor muscles, the subclavius muscle makes up the anterior wall of the axilla. FMA:13410 NCIT:C33644 @@ -503875,11 +503866,11 @@ subclavius http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray411subclavius.png - + - + @@ -503892,13 +503883,13 @@ - + dbpedia - + subclavian groove of clavicle dbpedia @@ -503937,7 +503928,7 @@ - + @@ -503948,7 +503939,7 @@ - + An embryonic structure that is derived from the inner cell mass and lies above the hypoblast and gives rise to the three primary germ layers. EHDAA2:0000444 EHDAA:42 @@ -503964,14 +503955,14 @@ The epiblast cells (appearing on day 8 of human embryonic development) make up a columnar epithelium with dense microvilli on the apical surface. During gastrulation, the epiblast cells undergo epithelial-to-mesenchymal transition and delaminate to become the loose mesenchyme of the primitive streak. The epiblast is present in postimplantation mouse embryos between E5.5-E7.5. inner cell mass derived epiblast - + - + Wikipedia @@ -504002,13 +503993,13 @@ - + - - + + An epiblast (generic) that develops_from a blastodisc. The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation. Kimmel et al, 1995.[TAO] @@ -504022,24 +504013,24 @@ blastodisc derived epiblast - + - + - + ZFA - + Wikipedia @@ -504292,7 +504283,7 @@ - + The upper part of the gluteal tuberosity is often elongated into a roughened crest, on which a more or less well-marked, rounded tubercle, the third trochanter, is occasionally developed. underdeveloped / not present in humans FMA:75824 @@ -504303,7 +504294,7 @@ third trochanter https://upload.wikimedia.org/wikipedia/commons/2/2b/Third_trochanter-tweaked.png - + @@ -504316,7 +504307,7 @@ - + FMA @@ -504431,7 +504422,7 @@ - + Any of the three large depressions in the posterior, middle, and anterior aspects of the floor of the cranial cavity. todo - review the relationships for this and its subclasses; the relation should be bounded rather than part of, and contains should be used for the brain parts contained by the fossae FMA:321144 @@ -504439,14 +504430,14 @@ UBERON:0008789 cranial fossa - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -504522,7 +504513,7 @@ - + A rugal fold that is part of a stomach. FMA:15106 NCIT:C32660 @@ -504537,14 +504528,14 @@ UBERON:0008791 rugal fold of stomach - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -504605,7 +504596,7 @@ - + A rugal fold that is part of a vagina. FMA:19991 ruga of vagina @@ -504614,14 +504605,14 @@ UBERON:0008798 rugal fold of vagina - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -504662,7 +504653,7 @@ - + Any of the the series of transverse folds (ridges) of the mucosa located on the anterior third part of the secondary (hard) palate of most mammalian species. A masticatory vestige on the hard palate; one of several irregular, sometimes branching, crests of soft tissue that radiate from the region of the incisive papillae at their most anterior parts and extend a slight distance backward, crossing the hard palate and reaching laterally for variable distances. rugae are present on each side of the median palatal raphe and behind the incisive papillae, but their number and arrangement are species specific; together with the teeth and the tongue, rugae take part in mastication by helping to sense, hold and mash the food; rugae harbor various types of intraepithelial sensory structures (such as Merckel cells, corpuscular endings and free nerve endings), and play a sensory role when the food is pressed by the tongue against the hard palate[MP] @@ -504690,14 +504681,14 @@ transverse palatine fold - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -504827,7 +504818,7 @@ - + Primitive endoderm-derived tissue that lines the luminal surface of the mural trophectoderm[MP]. EMAPA:16053 uberon @@ -504836,7 +504827,7 @@ parietal endoderm - + @@ -504849,7 +504840,7 @@ - + MP @@ -504982,11 +504973,11 @@ - - - - - + + + + + The stylopharyngeus is a muscle in the head that stretches between the styloid process and the pharynx. The stylopharyngeus is a pharyngeal arch III muscle that participates in oral/pharyngeal behaviors and is innervated by the n. to stylopharyngeus branch of the glossopharyngeal n. and attaches to the hyoid apparatus and the pharynx.[FEED] @@ -505004,23 +504995,23 @@ stylopharyngeus muscle http://upload.wikimedia.org/wikipedia/commons/5/59/Musculusstylopharyngeus.png - + - + - + - + - + @@ -505033,31 +505024,31 @@ - + FMA-abduced-lr - + dbpedia - + Wikipedia - + dbpedia - + thyroid cartilage dbpedia @@ -505213,7 +505204,7 @@ - + @@ -505234,14 +505225,14 @@ coagulating gland - + - + MA EMAPA @@ -505545,7 +505536,7 @@ - + The part of the cochlear labyrinth where the scala tympani and the scala vestibuli meet. It is the main component of the cochlear apex. The hair cells in this area best detect low frequency sounds. apex of cochlea cochlear apex @@ -505560,7 +505551,7 @@ helicotrema http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png - + @@ -505573,7 +505564,7 @@ - + Wikipedia @@ -505687,8 +505678,8 @@ - - + + @@ -505710,24 +505701,24 @@ pharyngeal slit https://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gill_slits.png/280px-Gill_slits.png - + - + - + PMID:11961109 - + cjm @@ -505813,20 +505804,20 @@ - + An endoderm that is part of a thymus primordium. uberon UBERON:0008817 thymus primordium endoderm - + - + PMID:16313389 @@ -505842,7 +505833,7 @@ - + The superior mediastinum is that portion of the interpleural space which lies between the manubrium sterni in front, and the upper thoracic vertebrae behind. FMA:9827 NCIT:C33684 @@ -505856,14 +505847,14 @@ superior mediastinum http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png - + - + FMA @@ -505898,8 +505889,8 @@ - - + + Anterior, middle and posterior mediastinum. FMA:9828 SCTID:243950006 @@ -505909,24 +505900,24 @@ UBERON:0008819 inferior mediastinum - + - + - + FMA-propagated - + FMA @@ -505948,7 +505939,7 @@ - + The anterior mediastinum exists only on the left side where the left pleura diverges from the mid-sternal line. It is narrow, above, but widens out a little below. FMA:9838 @@ -505963,14 +505954,14 @@ anterior mediastinum http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png - + - + FMA @@ -506011,7 +506002,7 @@ - + The middle mediastinum is the broadest part of the interpleural space. It is made up of the pericardial sac and its contents. FMA:9839 NCIT:C33123 @@ -506025,14 +506016,14 @@ middle mediastinum http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png - + - + FMA @@ -506067,7 +506058,7 @@ - + The posterior mediastinum is an irregular triangular space running parallel with the vertebral column. FMA:9840 NCIT:C33368 @@ -506081,14 +506072,14 @@ posterior mediastinum http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png - + - + FMA @@ -506135,7 +506126,7 @@ - + @@ -506150,7 +506141,7 @@ neural tube derived brain https://github.com/obophenotype/uberon/issues/338 - + @@ -506163,7 +506154,7 @@ - + FMA @@ -506192,7 +506183,7 @@ - + @@ -506212,14 +506203,14 @@ UBERON:0008824 duct of epididymis - + - + FMA @@ -506423,8 +506414,8 @@ - - + + @@ -506444,11 +506435,11 @@ presphenoid bone - + - + @@ -506461,13 +506452,13 @@ - + MA - + ISBN:0073040584 @@ -506693,7 +506684,7 @@ - + A nerve arising from the second and third cervical nerves from the cervical plexus and innervating the skin over the parotid gland, the skin of part of the ear, the adjacent portion of the scalp, cheek, and angle of the jaw. FMA:6872 @@ -506708,14 +506699,14 @@ great auricular nerve http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray805.png - + - + FMA Wikipedia @@ -506752,7 +506743,7 @@ - + The first body segment in annelids worms. It is in front of (but does not include) the mouth, being usually a small shelf- or lip-like extension over the dorsal side of the mouth. Often functions like a kind of overlip when the animal is feeding. sometimes bears antennae and eyes @@ -506763,14 +506754,14 @@ UBERON:0008834 prostomium - + - + Wikipedia @@ -506797,8 +506788,8 @@ - - + + An out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. Constitutes the first morphological sign of the embryonic liver. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile ducts. in mice, the hepatic diverticulum forms by E9 and expands into an obvious liver bud by E10 The caudal part of the septum transversum is invaded by the hepatic diverticulum which divides within it to form the liver and thus gives rise to the ventral mesentery of the foregut. @@ -506817,11 +506808,11 @@ hepatic diverticulum http://upload.wikimedia.org/wikipedia/commons/4/4f/Gray1088.png - + - + @@ -506834,14 +506825,14 @@ - + caudal part EHDAA2 - + EHDAA2 @@ -506880,13 +506871,13 @@ - + BTO:0001642 uberon UBERON:0008836 liver bud - + @@ -506899,7 +506890,7 @@ - + http://www.stembook.org/node/512 @@ -507055,7 +507046,7 @@ - + An autopod pad that is in the metatarsal region. The canine metatarsal pad is large and heart-shaped, and functions to cushion the foot. The pad is covered by a naked, densely cornified epidermis, which is usually highly pigmented and is the toughest region of the canine skin. The digital cushion or bulk of the foot pad is composed of a subcutaneous adipose tissue, partitioned by reticular, collagenous and elastic fibres. The subcutis of the canine footpads contains sweat glands embedded in the adipose tissue. The ducts of these glands channel through the thick epidermis of the foot pad. The secretions from these glands function as territorial or trail markers[MURDOCH:1334]. EMAPA:18507 @@ -507067,14 +507058,14 @@ UBERON:0008840 plantar pad - + - + EMAPA @@ -507134,7 +507125,7 @@ - + @@ -507149,7 +507140,7 @@ UBERON:0008842 suspensory ligament of testis - + @@ -507162,7 +507153,7 @@ - + Obol @@ -507366,7 +507357,7 @@ - + @@ -507377,10 +507368,10 @@ - - - - + + + + Dense regular connective tissue connecting two or more adjacent skeletal elements[VSAO,modified]. logical definition deliberately made strict to avoid classifying MA:spiral ligament as both nonskeletal and skeletal. see https://github.com/obophenotype/mouse-anatomy-ontology/issues/71 Dense regular connective tissue connecting two or more adjacent skeletal elements or supporting an organ.[VSAO] @@ -507405,44 +507396,44 @@ skeletal ligament https://upload.wikimedia.org/wikipedia/commons/9/9a/Knee_diagram.svg - + - + - + - + - + AEO - + AEO - + bones or cartilage organs - + VSAO @@ -507508,7 +507499,7 @@ - + @@ -507535,7 +507526,7 @@ The ligament runs in the broad ligament of the uterus, which is a fold of peritoneum rather than a fibrous ligament. Specifically, it is located in the parametrium ovarian ligament - + @@ -507548,7 +507539,7 @@ - + lower gubernaculum Wikipedia @@ -507585,7 +507576,7 @@ - + Connects the cranial tip of the future gonad to the dorsocranial abdominal cavity. TODO - check - add cranial ovarian susp ligaments EMAPA:30068 @@ -507593,7 +507584,7 @@ UBERON:0008848 cranial suspensory ligament - + @@ -507606,7 +507597,7 @@ - + EMAPA @@ -507817,7 +507808,7 @@ - + A group of granular epithelial cells in the uterine muscle beneath the placenta that develops during pregnancy in rodents and some other species. MA:0001723 @@ -507827,14 +507818,14 @@ placenta metrial gland - + - + MP @@ -507869,7 +507860,7 @@ - + @@ -507896,14 +507887,14 @@ stomach muscularis externa - + - + MA-abduced @@ -507950,7 +507941,7 @@ - + @@ -507986,14 +507977,14 @@ stomach smooth muscle circular layer - + - + FMA @@ -508041,7 +508032,7 @@ - + @@ -508073,7 +508064,7 @@ pyloric canal https://upload.wikimedia.org/wikipedia/commons/3/33/Illu_stomach.jpg - + @@ -508086,7 +508077,7 @@ - + Wikipedia @@ -508134,7 +508125,7 @@ - + @@ -508160,7 +508151,7 @@ cardiac gastric gland - + @@ -508173,7 +508164,7 @@ - + FMA @@ -508276,7 +508267,7 @@ - + @@ -508301,7 +508292,7 @@ pyloric gastric gland http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray1054.png - + @@ -508314,7 +508305,7 @@ - + Wikipedia:Tubular_gland @@ -508356,7 +508347,7 @@ - + @@ -508383,14 +508374,14 @@ The only layer of the three which is not seen in other parts of the digestive system[WP]. stomach smooth muscle inner oblique layer - + - + MP @@ -508536,7 +508527,7 @@ - + @@ -508554,14 +508545,14 @@ trabecular network of bone - + - + MP @@ -508829,7 +508820,7 @@ - + @@ -508862,14 +508853,14 @@ hypodermis skeletal muscle layer - + - + MP-def @@ -508905,7 +508896,7 @@ - + @@ -508938,14 +508929,14 @@ epidermal-dermal junction - + - + MP @@ -509044,7 +509035,7 @@ - + subclasses (anterior, superior, posterior) can be added on request EMAPA:37434 FMA:61035 @@ -509057,7 +509048,7 @@ UBERON:0008879 ligament of pinna - + @@ -509070,7 +509061,7 @@ - + MA @@ -509104,7 +509095,7 @@ - + Rearmost segment of annelid worms. periproct Wikipedia:Periproct @@ -509113,14 +509104,14 @@ UBERON:0008880 annelid pygidium - + - + Wikipedia @@ -509154,8 +509145,8 @@ - - + + @@ -509178,24 +509169,24 @@ rostral migratory stream - + - + - + BTO-modified - + MP-modified @@ -509770,9 +509761,9 @@ - - - + + + A primordium or bud that develops into a gill. TAO:0001107 XAO:0000448 @@ -509785,15 +509776,15 @@ UBERON:0008894 pharyngeal gill precursor - + - + - + @@ -509806,19 +509797,19 @@ - + XAO - + XAO - + ZFA @@ -509859,8 +509850,8 @@ - - + + Subdivision of endoskeleton derived from pharyngeal arches. @@ -509893,24 +509884,24 @@ splanchnocranium http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg - + - + - + https://github.com/obophenotype/uberon/issues/83 - + redundant Grays PMID:11237469 @@ -510229,7 +510220,7 @@ - + Lateral protrusion of the third ventricle. lateral recess TAO:0000231 @@ -510240,7 +510231,7 @@ UBERON:0008902 lateral recess of third ventricle - + @@ -510253,7 +510244,7 @@ - + ZFA @@ -510308,8 +510299,8 @@ - - + + Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Type of mechanoreceptive organ of the lateral line which are arranged in lines on the body surface. These organs are constituted by hair cells and supporting cells and it is located in the epidermis with its hair cells exposed to the surface. Absent in some caecilians. These receptors receive afferent and efferent innervations.[AAO] Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO] @@ -510329,24 +510320,24 @@ neuromast - + - + - + DOI:10.1038/ncomms1502 - + ZFA @@ -510451,7 +510442,7 @@ - + @@ -510476,14 +510467,14 @@ UBERON:0008906 lateral line nerve - + - + NCBIBook:NBK53175 @@ -510534,13 +510525,13 @@ - + - + Skeletal element that forms superficially in the organism, usually in association with the ectoderm[VSAO]. Intramembranous bone that forms superficially in the organism.[TAO] other AOs are not yet in sync with this classification @@ -510555,7 +510546,7 @@ UBERON:0008907 dermal bone - + @@ -510574,7 +510565,7 @@ - + VSAO @@ -510719,8 +510710,8 @@ - - + + Bone element that is located on the surface of a cartilage element. Replacement bone that forms within the connective tissue surrounding cartilage.[TAO] AAO:0010779 @@ -510734,11 +510725,11 @@ include the subtyping under 'replacement bone', for consistency with ZFA, but VSAO does not include this intermediate class perichondral bone - + - + @@ -510751,13 +510742,13 @@ - + VSAO - + ZFA @@ -511392,7 +511383,7 @@ - + @@ -511423,7 +511414,7 @@ somatosensory cortex - + @@ -511436,7 +511427,7 @@ - + BTO @@ -511488,7 +511479,7 @@ - + (Chapin & Lin, 1984, rat): the region considered as the SI cortex is not a cytoarchitecturally homogeneous structure but consists instead of a patchwork array of areas containing dense aggregations of layer IV granule cells, surrounded by granule-cell-sparse regions. As was shown by Welker (b71,b76), and in our own mapping studies (see Fig. 3), this discontinuous pattern of granular, or koniocortical, zones contains within itself a map of the ratbs cutaneous periphery. There are clear subtypes within this cytoarchitectural subregion, notably including the bgranular aggregateb type of cytoarchitecture characteristic of the paw, limb, and mystacial vibrissae areas, and the bbarrel-fieldb type (originally described by Woolsey and Van der Loos, b70) seen in the nose and perioral regions. In the mouse, but not the rat, such barrels also cover the whole whisker representation (Welker and Woolsey, b74). ABA disjointness - Removed relationship: part_of UBERON:0001870 frontal cortex S1 @@ -511510,14 +511501,14 @@ primary somatosensory cortex - + - + DHBA MA NIFSTD @@ -511578,7 +511569,7 @@ - + The area of the upper bank of the lateral sulcus that is involved in somatic sensation. TODO - check brodmann S2 @@ -511595,14 +511586,14 @@ secondary somatosensory cortex - + - + WP @@ -511741,7 +511732,7 @@ - + @@ -511754,7 +511745,7 @@ UBERON:0008939 pedal ganglion - + @@ -511767,7 +511758,7 @@ - + BTO @@ -511783,7 +511774,7 @@ - + @@ -511796,7 +511787,7 @@ UBERON:0008940 parietal ganglion - + @@ -511809,7 +511800,7 @@ - + BTO @@ -511825,7 +511816,7 @@ - + @@ -511839,7 +511830,7 @@ UBERON:0008941 pleural ganglion - + @@ -511852,7 +511843,7 @@ - + BTO @@ -512004,13 +511995,13 @@ - + - + A parenchyma that is part of a lung. EMAPA:35522 FMA:27360 @@ -512023,7 +512014,7 @@ UBERON:0008946 lung parenchyma - + @@ -512036,7 +512027,7 @@ - + FMA @@ -512531,7 +512522,7 @@ - + Anterioinferior portion of left upper lung lobe. the lingula of the left lung in humans is not normally considered a true lobe @@ -512550,7 +512541,7 @@ UBERON:0008954 lingula of left lung - + @@ -512563,7 +512554,7 @@ - + ISBN:0123813611 @@ -512650,21 +512641,21 @@ - + A layer of new bone growth outside existing bone seen in pyogenic osteomyelitis. It results from the stripping off of the periosteum by the accumulation of pus within the bone, and new bone growing from the periosteum. Wikipedia:Involucrum uberon UBERON:0008956 involucrum - + - + Wikipedia @@ -512680,21 +512671,21 @@ - + A piece of dead bone that has become separated during the process of necrosis from normal/sound bone.. Wikipedia:Sequestrum uberon UBERON:0008957 sequestrum - + - + Wikipedia @@ -512710,7 +512701,7 @@ - + @@ -512728,14 +512719,14 @@ UBERON:0008958 cetacean involucrum - + - + Wikipedia:Evolution_of_cetaceans @@ -512751,9 +512742,9 @@ - - - + + + A hollow bony structure on the ventral, posterior portion of the skull of placental mammals that encloses parts of the middle and inner ear. In most species, it is formed by the tympanic part of the temporal bone. In extant primates, the structure is found in tarsiers, lemurs, and lorises[WP]. When present in marsupials, it usually forms the alisphenoid; in placentals variously constructed of ectotympanic, entotympanic, petrosal, or a combination of these and others may be formed from entotympanic and ectotympanic @@ -512770,34 +512761,34 @@ auditory bulla http://upload.wikimedia.org/wikipedia/commons/a/af/Toothed_whale_sound_production.png - + - + - + - + ISBN:0073040584 - + Wikipedia - + Rose @@ -513023,7 +513014,7 @@ - + @@ -513039,7 +513030,7 @@ UBERON:0008964 abdominal ganglion of visceral hump - + @@ -513052,7 +513043,7 @@ - + BTO @@ -513080,7 +513071,7 @@ - + The semioval center is the white matter found underneath the grey matter on the surface of the cerebrum. The term is synonymous with cerebral white matter. The white matter, located in each hemisphere between the cerebral cortex and nuclei, as a whole has a semioval shape. It consists of cortical projection fibers, association fibers and cortical fibers. WP suggests a merge with cerebral white matter BAMS:cw @@ -513103,14 +513094,14 @@ centrum semiovale http://upload.wikimedia.org/wikipedia/commons/9/95/Gray752.png - + - + FMA @@ -513236,8 +513227,8 @@ - - + + The distal portion of the colon; it develops embryonically from the hindgut and functions in the storage and elimination of waste. BTO:0000646 CALOHA:TS-0202 @@ -513250,24 +513241,24 @@ UBERON:0008971 left colon - + - + - + BTO - + BTO @@ -513295,8 +513286,8 @@ - - + + The proximal portion of the colon, extending from the ileocecal valve usually to a point proximal to the left colic flexure; it develops embryonically from the terminal portion of the midgut and functions in absorption. BTO:0000649 NCIT:C12383 @@ -513308,24 +513299,24 @@ UBERON:0008972 right colon - + - + - + BTO - + BTO @@ -513434,7 +513425,7 @@ - + @@ -513453,14 +513444,14 @@ snake venom glands are modified salivary glands. In future this class may be merged into a more general modified salivary gland venom gland class snake venom gland - + - + ISBN:0073040584 @@ -513488,7 +513479,7 @@ - + @@ -513510,14 +513501,14 @@ pes anserinus of tibia https://upload.wikimedia.org/wikipedia/commons/b/b1/Pes_anserinus.png - + - + BTO @@ -513673,7 +513664,7 @@ - + @@ -513696,7 +513687,7 @@ fascia - + @@ -513709,7 +513700,7 @@ - + fasciae connect muscles to other muscles @@ -513740,12 +513731,12 @@ - + - + The functional tissue of the kidney, consisting of the nephrons. BTO:0003604 FMA:15574 @@ -513756,7 +513747,7 @@ UBERON:0008987 renal parenchyma - + @@ -513769,7 +513760,7 @@ - + FMA @@ -513876,7 +513867,7 @@ - + The part of the chorion where the villi persist, forming the foetal part of the placenta. BTO:0003677 SCTID:37333001 @@ -513885,7 +513876,7 @@ UBERON:0008992 chorion frondosum - + @@ -513898,7 +513889,7 @@ - + BTO @@ -514157,7 +514148,7 @@ - + @@ -514172,14 +514163,14 @@ UBERON:0008999 hoof lamina - + - + BTO @@ -514285,7 +514276,7 @@ - + @@ -514309,14 +514300,14 @@ placental membrane - + - + BTO @@ -514531,7 +514522,7 @@ - + @@ -514555,14 +514546,14 @@ carotid sinus nerve - + - + FMA @@ -514798,7 +514789,7 @@ - + EMAPA:35241 FMA:312260 MA:0001239 @@ -514809,14 +514800,14 @@ UBERON:0009016 ciliary stroma - + - + MA @@ -515348,7 +515339,7 @@ - + @@ -515366,7 +515357,7 @@ sulcus ampullaris - + @@ -515379,7 +515370,7 @@ - + MA @@ -515412,7 +515403,7 @@ - + A germinal center that is located in a lymph node. germinal center @@ -515432,14 +515423,14 @@ lymph node germinal center - + - + MA @@ -515473,14 +515464,14 @@ - + - + The deep circumflex iliac artery (or deep iliac circumflex artery) is an artery in the pelvis that travels along the iliac crest of the pelvic bone. FMA:20687 @@ -515500,24 +515491,24 @@ http://upload.wikimedia.org/wikipedia/commons/0/07/Gray586.png http://upload.wikimedia.org/wikipedia/commons/7/74/Gray586.png - + - + - + FMA - + FMA @@ -515588,7 +515579,7 @@ - + The superficial iliac circumflex artery (or superficial circumflex iliac), the smallest of the cutaneous branches of the femoral artery, arises close to the superficial epigastric artery, and, piercing the fascia lata, runs lateralward, parallel with the inguinal ligament, as far as the crest of the ilium. It divides into branches which supply the integument of the groin, the superficial fascia, and the superficial subinguinal lymph glands, anastomosing with the deep iliac circumflex, the superior gluteal and lateral femoral circumflex arteries. FMA:20737 @@ -515604,14 +515595,14 @@ superficial circumflex iliac artery http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray548.png - + - + FMA @@ -516319,20 +516310,20 @@ - + SCTID:62426003 uberon UBERON:0009064 cervical air sac - + - + ISBN:0073040584 @@ -516343,7 +516334,7 @@ - + SCTID:17911004 uberon @@ -516352,14 +516343,14 @@ UBERON:0009065 anterior thoracic air sac - + - + ISBN:0073040584 @@ -516376,7 +516367,7 @@ - + SCTID:10576005 uberon caudal thoracic air sac @@ -516384,14 +516375,14 @@ UBERON:0009066 posterior thoracic air sac - + - + ISBN:0073040584 @@ -516402,20 +516393,20 @@ - + SCTID:43701009 uberon UBERON:0009067 abdominal air sac - + - + ISBN:0073040584 @@ -516660,22 +516651,21 @@ - - + This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the inner medullar parallel to the descending limb KUPO:0001003 uberon UBERON:0009089 - inner medulla vasa recta descending limb + inner medulla descending vasa recta - + - + KUPO @@ -516691,22 +516681,21 @@ - - + This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the outer medullar parallel to the descending limb KUPO:0001004 uberon UBERON:0009090 - outer medulla vasa recta descending limb + outer medulla descending vasa recta - + - + KUPO @@ -516722,24 +516711,23 @@ - - + This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta parallel to the ascending limb KUPO:0001005 uberon UBERON:0009091 - vasa recta ascending limb + ascending vasa recta - + - + KUPO @@ -516755,22 +516743,21 @@ - - + This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the inner medulla parallel to the ascending limb KUPO:0001006 uberon UBERON:0009092 - inner medulla vasa recta ascending limb + inner medulla ascending vasa recta - + - + KUPO @@ -516786,22 +516773,21 @@ - - + This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the outer medulla parallel to the ascending limb KUPO:0001007 uberon UBERON:0009093 - outer medulla vasa recta ascending limb + outer medulla ascending vasa recta - + - + KUPO @@ -516817,7 +516803,7 @@ - + KUPO:0001009 papillary tip @@ -516827,14 +516813,14 @@ tip of renal papilla - + - + KUPO @@ -517244,7 +517230,7 @@ - + @@ -517258,14 +517244,14 @@ Genes: FOXN1 thymoid - + - + PMID:21293377 @@ -517329,7 +517315,7 @@ - + pouch Wikipedia:Pouch_(marsupial) marsupial pouch @@ -517337,14 +517323,14 @@ UBERON:0009118 marsupium - + - + we consider the fetus a type of or stage of the embryo @@ -517399,7 +517385,7 @@ - + @@ -517418,7 +517404,7 @@ gill filament - + @@ -517431,7 +517417,7 @@ - + ZFA @@ -517463,7 +517449,7 @@ - + @@ -517478,7 +517464,7 @@ - + @@ -517500,7 +517486,7 @@ UBERON:0009121 vomeronasal nerve - + @@ -517513,14 +517499,14 @@ - + - + Wikipedia @@ -517532,7 +517518,7 @@ - + ISBN:0471888893 @@ -517566,7 +517552,7 @@ - + The adenohypophyseal placode forms the anterior lobe of the pituitary gland and gives rise to the endocrine secretory cells of the pituitary. consider adding more detailed spatial placement - e.g. oral ectoderm and/or rostal ectoderm Fate-mapping studies in amphibian, chick and mouse embryos (Eagleson et al., 1986; 1995; Couly and Le Douarin, 1985; Cobos et al., 2001; Osumi-Yamachita et al., 1994; Kawamura et al., 2002) have shown that the cells contributing to the adenohypophysis develop at the midline of the anterior neural ridge, which delineates the rostral boundary of the neural plate, a region devoid of neural crest. The anterior neural ridge also gives rise to the olfactory placodes and some forebrain tissues including the olfactory bulbs (reviewed in Papalopulu, 1995). Ablation of this region in chick embryos at the 2-4 somite stage confirmed these lineage analyses as it prevented formation of Rathke's pouch and any further pituitary development (elAmraoui and Dubois, 1993). Upon head folding, the oral ectoderm cells of the adenohypophyseal placode invaginate towards the prospective ventral diencephalon to form Rathke's pouch, the anlage of the adenohypophysis. Rathke's pouch starts as an invagination of the oral ectoderm in response to inductive signals from the prospective diencephalon. The region of the diencephalon above the pouch is known as the infundibulum and forms the posterior lobe of the pituitary or neurohypohysis (Figure 3). While in most basal fish and tetrapods the adenohypophyseal anlagen invaginates to form Rathke's pouch, in teleost fish the adenohypophyseal placode does not invaginate but rather maintains its initial organization forming a solid structure in the head (reviewed in Pogoda and Hammerschmidt; 2009) @@ -517580,7 +517566,7 @@ adenohypophyseal placode - + @@ -517593,7 +517579,7 @@ - + ZFA @@ -517829,13 +517815,13 @@ - + - + Cranial ganglion which develops from an epibranchial placode. BTO:0006250 @@ -517848,7 +517834,7 @@ Epibranchial ganglia orchestrate the development of the cranial neurogenic crest epibranchial ganglion - + @@ -517861,7 +517847,7 @@ - + NCBIBook:NBK53175 @@ -517988,8 +517974,8 @@ - - + + Endocardium that is part of the right atrium. EHDAA2:0000274 FMA:7281 @@ -518003,24 +517989,24 @@ UBERON:0009129 right atrium endocardium - + - + - + EHDAA2 - + EHDAA2 @@ -518054,14 +518040,14 @@ - + RETIRED_EHDAA2:0000411 SCTID:361433003 uberon UBERON:0009130 dorsal meso-duodenum - + @@ -518074,7 +518060,7 @@ - + EHDAA2 @@ -518098,8 +518084,8 @@ - - + + One of a group of three muscles fibularis (peronæus) longus, brevis, and tertius originating on the fibula and inserting on the metatarsals. EHDAA2:0001450 EHDAA:8297 @@ -518118,24 +518104,24 @@ peroneus - + - + - + wikipedia - + wikipedia @@ -518229,7 +518215,7 @@ - + only a vestige of the right duct in the adult hagfish (21)[PMID:20959416, S1] EHDAA2:0004535 FMA:70310 @@ -518239,7 +518225,7 @@ UBERON:0009138 right common cardinal vein - + @@ -518252,7 +518238,7 @@ - + EHDAA2 @@ -518421,7 +518407,7 @@ - + @@ -518438,14 +518424,14 @@ UBERON:0009142 entire embryonic mesenchyme - + - + EHDAA2 @@ -518487,7 +518473,7 @@ - + EMAPA:16549 RETIRED_EHDAA2:0001454 pharyngeal region @@ -518495,14 +518481,14 @@ UBERON:0009145 pharyngeal region of foregut - + - + EHDAA2 @@ -518636,8 +518622,8 @@ - - + + @@ -518651,11 +518637,11 @@ UBERON:0009191 sphenoid bone pre-cartilage condensation - + - + @@ -518674,13 +518660,13 @@ - + EHDAA2 - + EHDAA2 @@ -518698,9 +518684,9 @@ - - - + + + EHDAA2:0003447 EMAPA:18013 basi-sphenoid pre-cartilage condensation @@ -518708,15 +518694,15 @@ UBERON:0009192 basisphenoid pre-cartilage condensation - + - + - + @@ -518729,19 +518715,19 @@ - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -518813,8 +518799,8 @@ - - + + EHDAA2:0000166 EMAPA:18338 VHOG:0001338 @@ -518823,11 +518809,11 @@ UBERON:0009194 basisphenoid cartilage condenstion - + - + @@ -518840,13 +518826,13 @@ - + EHDAA2 - + EHDAA2 @@ -518862,8 +518848,8 @@ - - + + The dorsal part of the cloacal membrane following its partition by the urorectal septum. EHDAA2:0004018 NCIT:C34105 @@ -518874,24 +518860,24 @@ During the 7th week the urorectal septum divides the cloacal membrane into a urogenital membrane (ventrally) and an anal membrane (dorsally) [http://www.embryology.ch/anglais/ugenital/genitexterne01.html] anal membrane - + - + - + EHDAA2 - + EHDAA2 @@ -518951,7 +518937,7 @@ - + @@ -518967,7 +518953,7 @@ UBERON:0009197 basioccipital pre-cartilage condensation - + @@ -518980,7 +518966,7 @@ - + EHDAA2 @@ -519071,20 +519057,20 @@ - + Any suture between facial bones. uberon UBERON:0009199 facial suture - + - + between two adjacent facial bones @@ -519171,24 +519157,23 @@ - - + This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta parallel to the descending limb KUPO:0001002 uberon UBERON:0009202 - vasa recta descending limb + descending vasa recta - + - + KUPO @@ -519270,12 +519255,12 @@ - + - + Mesenchyme that is part of a medial nasal prominence. EHDAA2:0001077 @@ -519285,14 +519270,14 @@ UBERON:0009204 medial nasal process mesenchyme - + - + EHDAA2 @@ -519371,7 +519356,7 @@ - + @@ -519386,14 +519371,14 @@ UBERON:0009206 lateral nasal process surface ectoderm - + - + EHDAA2 @@ -519440,7 +519425,7 @@ - + @@ -519480,14 +519465,14 @@ each membrane is initially composed of an inner layer formed by the endodermal lining of a branchial pouch and an outer layer formed by the ectodermal lining of the branchial groove; later, these two layers become separated by a thin layer of mesoderm; only the first branchial membrane contributes to the formation of an adult structure, i.e. the tympanic membrane (aka eardrum); the second, third, and fourth membranes are obliterated[MP] pharyngeal membrane - + - + EMAPA @@ -519525,7 +519510,7 @@ - + @@ -519553,14 +519538,14 @@ UBERON:0009213 pharyngeal membrane of 1st arch - + - + EMAPA @@ -519600,7 +519585,7 @@ - + @@ -519622,14 +519607,14 @@ UBERON:0009215 pharyngeal membrane of 2nd arch - + - + EMAPA @@ -519661,7 +519646,7 @@ - + @@ -519683,14 +519668,14 @@ UBERON:0009216 pharyngeal membrane of 3rd arch - + - + EMAPA @@ -519722,7 +519707,7 @@ - + @@ -519742,14 +519727,14 @@ UBERON:0009217 pharyngeal membrane of 4th arch - + - + EMAPA @@ -519842,7 +519827,7 @@ - + EHDAA:4780 EMAPA:16802 FMA:313738 @@ -519853,14 +519838,14 @@ UBERON:0009293 embryonic frontal process - + - + EMAPA @@ -519905,7 +519890,7 @@ - + The posterior portion of the sphenoid bone developed in five separate parts consisting of a central basisphenoid, the two alisphenoids, and the two medial pterygoid laminae. FMA:321633 SCTID:95950009 @@ -519914,7 +519899,7 @@ UBERON:0009470 postsphenoidal bone - + @@ -519927,7 +519912,7 @@ - + cjm @@ -519944,7 +519929,7 @@ - + The superior surface of the tongue divided by the sulcus terminalis into an anterior two-thirds, the presulcal part (pars presulcalis). and a posterior one-third, the postsulcal part (pars postsulcalis). FMA:54651 NCIT:C32482 @@ -519957,14 +519942,14 @@ UBERON:0009471 dorsum of tongue - + - + FMA @@ -520004,7 +519989,7 @@ - + The axilla is the area directly under the joint where the forelimb connects to the shoulder. axillary CALOHA:TS-2208 @@ -520033,14 +520018,14 @@ axilla http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png - + - + FMA @@ -520130,7 +520115,7 @@ - + Either of a pair of fleshy lateral processes borne by most segments of a polychaete worm. Wikipedia:Parapodium paradpod @@ -520140,7 +520125,7 @@ UBERON:0009473 parapodium - + @@ -520153,7 +520138,7 @@ - + Wikipedia @@ -520212,7 +520197,7 @@ - + @@ -520225,14 +520210,14 @@ UBERON:0009476 madreporite - + - + BTO @@ -520299,7 +520284,7 @@ - + Mesenchyme that is part of a developing midgut. previously logically defined as mesenchyme of midgut, but this caused disjointness violations between dense and loose mesenchyme EHDAA2:0001186 @@ -520310,7 +520295,7 @@ associated mesenchyme of midgut - + @@ -520323,7 +520308,7 @@ - + EHDAA2 @@ -520586,7 +520571,7 @@ - + @@ -520600,7 +520585,7 @@ - + A portion of mesenchymal tissue associated with an individual pharyngeal arch. this represents a part of the entire arch mesenchyme (UBERON:0010046), and is therefore a superclass of the individual arch mesenchyme classes. Alternate definition: primordial embryonic connective tissue associated with the branchial arches, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to facial and cranial nerve-associated structures. EMAPA:32755 @@ -520612,7 +520597,7 @@ pharyngeal arch mesenchymal region - + @@ -520625,7 +520610,7 @@ - + cjm @@ -520660,7 +520645,7 @@ - + EHDAA2:0000172 EMAPA:16562 uberon @@ -520668,14 +520653,14 @@ extrahepatic part of biliary bud - + - + EHDAA2 @@ -520686,7 +520671,7 @@ - + EHDAA2:0000173 EMAPA:16563 uberon @@ -520694,14 +520679,14 @@ intrahepatic part of biliary bud - + - + EHDAA2 @@ -520724,14 +520709,14 @@ - + - + An epithelium that is part of a foregut-midgut junction. EHDAA2:0000573 EMAPA:16564 @@ -520740,24 +520725,24 @@ epithelium of foregut-midgut junction - + - + - + EHDAA2 - + EHDAA2 @@ -520804,8 +520789,8 @@ - - + + @@ -520824,24 +520809,24 @@ periotic mesenchyme - + - + - + XAO - + EHDAA2 @@ -521132,8 +521117,8 @@ - - + + Mesenchyme that is part of a developing middle ear. Also 1st arch maxillary mesenchyme in EHDAA2 otic mesenchyme @@ -521145,11 +521130,11 @@ mesenchyme of middle ear - + - + @@ -521162,13 +521147,13 @@ - + EHDAA2 - + EHDAA2 @@ -521297,7 +521282,7 @@ - + Mesenchyme that is part of a handplate. We group two EMAPA classes here but these may need to be separated EHDAA2:0000731 @@ -521310,14 +521295,14 @@ mesenchyme of handplate - + - + EHDAA2 @@ -521715,7 +521700,7 @@ - + @@ -521744,7 +521729,7 @@ UBERON:0009551 distal segment of digit - + @@ -521764,7 +521749,7 @@ - + cjm @@ -522219,8 +522204,8 @@ - - + + A nail, hoof or claw. MESH:D006724 uberon @@ -522232,24 +522217,24 @@ UBERON:0009564 distal limb integumentary appendage - + - + - + cjm - + Wikipathways:WP2062 @@ -522276,8 +522261,8 @@ - - + + A nail that is part of a manual digit. EMAPA:35349 FMA:54327 @@ -522297,24 +522282,24 @@ nail of manual digit - + - + - + FMA - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -522396,7 +522381,7 @@ - + A submucosa that is part of a intestine. FMA:15696 submucosa of intestine @@ -522404,14 +522389,14 @@ UBERON:0009566 intestinal submucosa - + - + FMA @@ -522444,8 +522429,8 @@ - - + + A nail that is part of a pedal digit. EMAPA:36457 FMA:54328 @@ -522469,24 +522454,24 @@ nail of pedal digit - + - + - + FMA - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -522936,7 +522921,7 @@ - + A sulcus limitans of neural tube that is part of a future medulla oblongata. EHDAA2:0001100 EMAPA:17561 @@ -522944,14 +522929,14 @@ UBERON:0009576 medulla oblongata sulcus limitans - + - + EHDAA2 @@ -523164,7 +523149,7 @@ - + EFO:0003602 EMAPA:17579 MA:0003192 @@ -523176,14 +523161,14 @@ spinal cord lateral wall - + - + EMAPA @@ -523240,12 +523225,12 @@ - + - + Mesenchyme that is part of a 1st arch mandibular component. UBERON:0010043 EHDAA2:0000034 @@ -523258,14 +523243,14 @@ UBERON:0009584 1st arch mandibular mesenchyme - + - + EMAPA @@ -523336,13 +523321,13 @@ - + - + An interdigital region mesenchyme that is part of a interdigital region between manual digits 1 and 2. EHDAA2:0000846 EMAPA:17447 @@ -523352,14 +523337,14 @@ UBERON:0009586 mesenchyme of interdigital region between manual digits 1 and 2 - + - + EMAPA @@ -523391,13 +523376,13 @@ - + - + An interdigital region mesenchyme that is part of a interdigital region between manual digits 2 and 3. EHDAA2:0000849 EMAPA:17450 @@ -523407,14 +523392,14 @@ UBERON:0009587 mesenchyme of interdigital region between manual digits 2 and 3 - + - + EMAPA @@ -523446,13 +523431,13 @@ - + - + An interdigital region mesenchyme that is part of a interdigital region between manual digits 3 and 4. EHDAA2:0000852 EMAPA:17453 @@ -523462,14 +523447,14 @@ UBERON:0009588 mesenchyme of interdigital region between manual digits 3 and 4 - + - + EMAPA @@ -523501,13 +523486,13 @@ - + - + An interdigital region mesenchyme that is part of a interdigital region between manual digits 4 and 5. EHDAA2:0000855 EMAPA:17456 @@ -523517,14 +523502,14 @@ UBERON:0009589 mesenchyme of interdigital region between manual digits 4 and 5 - + - + EMAPA @@ -523556,13 +523541,13 @@ - + - + An interdigital region mesenchyme that is part of a interdigital region between pedal digits 1 and 2. EHDAA2:0000858 EMAPA:17478 @@ -523572,14 +523557,14 @@ UBERON:0009590 mesenchyme of interdigital region between pedal digits 1 and 2 - + - + EMAPA @@ -523611,13 +523596,13 @@ - + - + An interdigital region mesenchyme that is part of a interdigital region between pedal digits 2 and 3. EHDAA2:0000861 EMAPA:17481 @@ -523627,14 +523612,14 @@ UBERON:0009591 mesenchyme of interdigital region between pedal digits 2 and 3 - + - + EMAPA @@ -523666,13 +523651,13 @@ - + - + An interdigital region mesenchyme that is part of a interdigital region between pedal digits 3 and 4. EHDAA2:0000864 EMAPA:17484 @@ -523682,14 +523667,14 @@ UBERON:0009592 mesenchyme of interdigital region between pedal digits 3 and 4 - + - + EMAPA @@ -523721,13 +523706,13 @@ - + - + An interdigital region mesenchyme that is part of a interdigital region between pedal digits 4 and 5. EHDAA2:0000867 EMAPA:17487 @@ -523737,14 +523722,14 @@ UBERON:0009593 mesenchyme of interdigital region between pedal digits 4 and 5 - + - + EMAPA @@ -523957,7 +523942,7 @@ - + An interdigital region mesenchyme that is part of a manus. EMAPA:32653 mesenchyme of interdigital region of forelimb @@ -523965,14 +523950,14 @@ UBERON:0009600 mesenchyme of interdigital region of manus - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -524001,7 +523986,7 @@ - + An interdigital region mesenchyme that is part of a pes. EMAPA:32955 mesenchyme of interdigital region of hindlimb @@ -524009,14 +523994,14 @@ UBERON:0009601 mesenchyme of interdigital region of pes - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -524121,9 +524106,9 @@ - + - + @@ -524137,7 +524122,7 @@ UBERON:0009610 forebrain neural plate - + @@ -524146,20 +524131,20 @@ - + - + ZFA - + ZFA @@ -524174,9 +524159,9 @@ - + - + @@ -524190,7 +524175,7 @@ UBERON:0009611 midbrain neural plate - + @@ -524199,20 +524184,20 @@ - + - + ZFA - + ZFA @@ -524229,8 +524214,8 @@ - - + + TAO:0007020 ZFA:0007020 diencephalic-mesencephalic boundary neural plate @@ -524238,11 +524223,11 @@ UBERON:0009612 forebrain midbrain boundary neural plate - + - + @@ -524255,13 +524240,13 @@ - + ZFA - + ZFA @@ -524276,9 +524261,9 @@ - + - + @@ -524292,7 +524277,7 @@ UBERON:0009614 hindbrain neural plate - + @@ -524301,20 +524286,20 @@ - + - + ZFA - + ZFA @@ -524330,8 +524315,8 @@ - - + + TODO - developmental relationships for lines TAO:0007044 ZFA:0007044 @@ -524341,24 +524326,24 @@ UBERON:0009615 midbrain hindbrain boundary neural plate - + - + - + ZFA - + https://github.com/obophenotype/uberon/issues/438 Bgee:AN @@ -524392,14 +524377,14 @@ - + - + @@ -524424,24 +524409,24 @@ presumptive midbrain - + - + - + ZFA - + ZFA @@ -524487,7 +524472,7 @@ - + Bilateral mesenchymal mesoderm parallel and immediately adjacent to the neural tube/notochord; it generates a subset of extra-ocular, and other head, muscles. A major contributor to neurocranium [PMID:16313393] EHDAA2:0000736 @@ -524504,14 +524489,14 @@ UBERON:0009617 head paraxial mesoderm - + - + EHDAA2 @@ -524564,7 +524549,7 @@ - + EHDAA2:0002094 trunk and cervical paraxial mesenchyme uberon @@ -524572,14 +524557,14 @@ UBERON:0009618 trunk paraxial mesoderm - + - + EHDAA2 @@ -524602,24 +524587,24 @@ - + - + EHDAA2:0003239 uberon UBERON:0009620 tail bud paraxial mesoderm - + - + @@ -524632,13 +524617,13 @@ - + EHDAA2 - + EHDAA2 @@ -524698,7 +524683,7 @@ - + A proximal straight tubule that is part of a pronephros. TAO:0002239 ZFA:0001621 @@ -524707,14 +524692,14 @@ UBERON:0009622 pronephric proximal straight tubule - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -524995,7 +524980,7 @@ - + @@ -525016,14 +525001,14 @@ coccygeal nerve http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png - + - + FMA-abduced-lr @@ -525381,8 +525366,8 @@ - - + + Chondrocranium chondrification center that fuses with cartilages derived from sclerotome region of occipital somites forming occipital bone, hypoglossal canals and foramen magnum. Rod-shaped paired cartilages on either side of the notochord. They unite, forming the base of the chondrocranium and are replaced by the prootic bones.[TAO] NCIT:C34243 @@ -525394,11 +525379,11 @@ UBERON:0009635 parachordal cartilage - + - + @@ -525411,13 +525396,13 @@ - + ZFA - + ZFA @@ -525503,10 +525488,10 @@ - - - - + + + + The body of the sphenoid bone, more or less cubical in shape, is hollowed out in its interior to form two large cavities, the sphenoidal air sinuses, which are separated from each other by a septum. FMA:52867 SCTID:140491003 @@ -525522,44 +525507,44 @@ body of sphenoid http://upload.wikimedia.org/wikipedia/commons/d/d5/Gray146.png - + - + - + - + - + FMA - + FMA - + ISBN:1588903958 - + ISBN:1588903958 @@ -525625,7 +525610,7 @@ - + The ansa lenticularis (ansa lentiformis in older texts) is a part of the brain, making up the superior layer of the substantia innominata of Meynert. Its fibers, derived from the medullary lamina of the lentiform nucleus, pass medially to end in the thalamus and subthalamic region, while others are said to end in the tegmentum and red nucleus. It is classified by NeuroNames as part of the subthalamus. BAMS:al DHBA:10571 @@ -525643,14 +525628,14 @@ ansa lenticularis http://upload.wikimedia.org/wikipedia/commons/9/94/DA-loops_in_PD.jpg - + - + FMA @@ -525695,8 +525680,8 @@ - - + + A pathway containing fibers from midbrain nuclei that project to the inferior olivary complex, as well as fibers originating in the pontine reticular formation and the medullary reticular formation that project to several nuclei of the thalamus. It can be identified in the midbrain and the pons (Adapted from Brain Info). The central tegmental tract is a structure in the midbrain and pons. The central tegmental tract includes ascending axonal fibers which arise from the rostral nucleus solitarius and terminate in the ventral posteromedial nucleus (VPM) of thalamus. Information from the thalamus will go to cortical taste area, namely the insula and frontal operculum. It also contains descending axonal fibers from the parvocellular red nucleus. The descending axons will project to the inferior olivary nucleus. This latter pathway will be used to connect the contralateral cerebellum[Wikipedia:Central_tegmental_tract]. BAMS:ctg @@ -525712,11 +525697,11 @@ central tegmental tract http://upload.wikimedia.org/wikipedia/commons/f/f7/Midbrainsuperiorcolliculus.png - + - + @@ -525729,13 +525714,13 @@ - + NIFSTD - + NIFSTD @@ -526041,7 +526026,7 @@ - + The portions of renal substance (cortex) intervening between the bases of the pyramids and the capsule of the kidney. EMAPA:37486 FMA:17876 @@ -526056,14 +526041,14 @@ UBERON:0009650 cortical arch of kidney - + - + MA @@ -526126,7 +526111,7 @@ - + A basement membrane that is part of a nephron tubule. EMAPA:37490 MA:0001680 @@ -526140,14 +526125,14 @@ UBERON:0009651 nephron tubule basement membrane - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -526200,7 +526185,7 @@ - + A basement membrane that is part of a bronchus. MA classifies as type of connective tissue: https://github.com/obophenotype/mouse-anatomy-ontology/issues/108 EMAPA:37809 @@ -526212,14 +526197,14 @@ UBERON:0009652 bronchus basement membrane - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -526272,8 +526257,8 @@ - - + + A basement membrane that is part of a trachea. EMAPA:37552 MA:0001854 @@ -526283,25 +526268,25 @@ UBERON:0009653 trachea basement membrane - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + MA-modified @@ -526694,7 +526679,7 @@ - + EHDAA2:0004566 EMAPA:32911 MA:0003203 @@ -526705,14 +526690,14 @@ gut mesentery https://github.com/obophenotype/uberon/issues/509 - + - + EHDAA2 @@ -526734,7 +526719,7 @@ - + Ventral mesentery is the part of the peritoneum closest to the navel. degenerates during development except foregut portion EHDAA2:0004569 @@ -526744,14 +526729,14 @@ UBERON:0009668 ventral mesentery - + - + EHDAA2 @@ -526832,8 +526817,8 @@ - - + + @@ -526850,24 +526835,24 @@ UBERON:0009670 rectal lumen - + - + - + cjm - + EHDAA2 @@ -526890,7 +526875,7 @@ - + @@ -526904,14 +526889,14 @@ UBERON:0009671 nasal fin - + - + EHDAA2 @@ -526929,9 +526914,9 @@ - - - + + + The oronasal membrane separates the oral cavity and nasal cavity. split into two? In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity @@ -526944,15 +526929,15 @@ UBERON:0009672 oronasal membrane - + - + - + @@ -526965,19 +526950,19 @@ - + EHDAA2 - + EHDAA2 - + posterior portion EHDAA2 @@ -527006,7 +526991,7 @@ - + @@ -527025,14 +527010,14 @@ Thus in contemporary discussions of the accessory nerve, the common practice is to dismiss the cranial part altogether, referring to the accessory nerve specifically as the spinal accessory nerve. accessory XI nerve cranial component - + - + MA @@ -527052,7 +527037,7 @@ - + @@ -527073,14 +527058,14 @@ UBERON:0009674 accessory XI nerve spinal component - + - + EHDAA2 @@ -527118,7 +527103,7 @@ - + The chorda tympani is a nerve that branches from the facial nerve (cranial nerve VII) inside the facial canal, just before the facial nerve exits the skull via the stylomastoid foramen. Chorda tympani is a branch of the facial nerve (the seventh cranial nerve) that serves the taste buds in the front of the tongue, runs through the middle ear, and carries taste messages to the brain. The chorda tympani is part of one of three cranial nerves that are involved in taste. The taste system involves a complicated feedback loop, with each nerve acting to inhibit the signals of other nerves. The chorda tympani appears to exert a particularly strong inhibitory influence on other taste nerves, as well as on pain fibers in the tongue. When the chorda tympani is damaged, its inhibitory function is disrupted, leading to less inhibited activity in the other nerves. EHDAA2:0000490 @@ -527143,14 +527128,14 @@ chorda tympani branch of facial nerve - + - + EHDAA2 @@ -527214,8 +527199,8 @@ - - + + EFO:0003562 EHDAA2:0001981 EHDAA:1993 @@ -527228,24 +527213,24 @@ early telencephalic vesicle - + - + - + EHDAA2 - + EHDAA2 @@ -527533,8 +527518,8 @@ - - + + The posterior inferior cerebellar artery (PICA), the largest branch of the vertebral, is one of the three main arterial blood supplies for the cerebellum. @@ -527550,24 +527535,24 @@ posterior inferior cerebellar artery - + - + - + FMA - + EHDAA2 @@ -527602,7 +527587,7 @@ - + A basilar artery branch that supplies the anterior portion of the inferior surface of the cerebellum. EHDAA2:0000587 @@ -527617,14 +527602,14 @@ anterior inferior cerebellar artery - + - + EHDAA2 @@ -527676,8 +527661,8 @@ - - + + An organ cavity that is part of a pharyngotympanic tube. Check relationships for conformance with AAO and XAO EHDAA2:0004118 @@ -527690,11 +527675,11 @@ UBERON:0009692 lumen of pharyngotympanic tube - + - + @@ -527707,13 +527692,13 @@ - + cjm - + EHDAA2/Kardong @@ -527756,13 +527741,13 @@ - + - - + + An epithelium that is part of a hypopharynx. EHDAA2:0004575 FMA:62454 @@ -527772,24 +527757,24 @@ UBERON:0009695 epithelium of laryngopharynx - + - + - + EHDAA2 - + EHDAA2 @@ -527828,14 +527813,14 @@ - + - + An epithelium that is part of a vermiform appendix. CALOHA:TS-2062 EHDAA2:0004561 @@ -527846,24 +527831,24 @@ UBERON:0009697 epithelium of appendix - + - + - + EHDAA2 - + EHDAA2 @@ -527893,9 +527878,9 @@ - - - + + + EHDAA2:0001371 uberon @@ -527905,15 +527890,15 @@ dorsal pancreas - + - + - + @@ -527926,19 +527911,19 @@ - + EHDAA2 - + EHDAA2 - + cjm @@ -527950,9 +527935,9 @@ - - - + + + EHDAA2:0001393 uberon @@ -527962,15 +527947,15 @@ ventral pancreas - + - + - + @@ -527983,19 +527968,19 @@ - + EHDAA2 - + EHDAA2 - + cjm @@ -528022,8 +528007,8 @@ - - + + Any endocardium that is part of the right ventricle of the heart. Endocardium of ventricle which is continuous tricuspid valve, pulmonary valve and with the tunica intima of the pulmonary trunk. EHDAA2:0002188 @@ -528040,24 +528025,24 @@ UBERON:0009712 endocardium of right ventricle - + - + - + EHDAA2 - + FMA @@ -528120,7 +528105,7 @@ - + Any endocardium that is part of the left ventricle of the heart. Endocardium of ventricle which is continuous with mitral valve, aortic valve, atrioventricular septum and the tunica intima of the aorta. EHDAA2:0002182 @@ -528136,14 +528121,14 @@ UBERON:0009713 endocardium of left ventricle - + - + FMA @@ -528189,8 +528174,8 @@ - - + + The primordial mass of tissue formed by the merging of the medial nasal prominences of the embryo; it contributes to the intermaxillary portion of the upper jaw, the prolabial portion of the upper lip, and the primary palate. requires verification. Note EHDAA2 has this as coming from both lateral and medial prominences. See also: median cleft lip EHDAA2:0000868 @@ -528204,11 +528189,11 @@ UBERON:0009714 intermaxillary process - + - + @@ -528221,14 +528206,14 @@ - + inconsistent EHDAA2 - + EHDAA2 @@ -528482,7 +528467,7 @@ - + @@ -528497,14 +528482,14 @@ UBERON:0009722 entire pharyngeal arch endoderm - + - + EHDAA2 @@ -529281,7 +529266,7 @@ - + EMAPA:35113 FMA:69086 MA:0001887 @@ -529292,14 +529277,14 @@ UBERON:0009753 adrenal gland cortex zone - + - + MA @@ -529618,7 +529603,7 @@ - + the left duct atrophies at metamorphosis in the lamprey (22)[PMID:20959416, S1] EHDAA2:0000304 FMA:70311 @@ -529628,7 +529613,7 @@ UBERON:0009769 left common cardinal vein - + @@ -529641,7 +529626,7 @@ - + EHDAA2 @@ -529833,7 +529818,7 @@ - + A nuclear complex of the medullary reticular formation that can be divided into three subnuclei: the parvocellular, magnocellular and the subtrigeminal[WP,modified]. BAMS:LMRt FMA:72573 @@ -529848,7 +529833,7 @@ The lateral reticular nucleus, of the funiculus, can be divided into three subnuclei, the parvocellular, magnocellular and the subtrigeminal. As is typical of the reticular formation, none of these are very distinct subnuclei, but rather blurred distinctions between cell types and location. The lateral reticular nucleus sends all of its projections to the cerebellum. The parvocellular portion of the LRN and the immediately adjacent magnocellular portion send most their projections to the vermis of the cerebellum. The rest of the magnocellular subnucleus sends its projections to the hemisphere regions of the cerebellum. The subtrigeminal nucleus sends its projections to the flocculonodular lobe. All of these efferent pathways are projected in an ipsilateral manner to the cerebellum, the most abundant of which are those to the vermis. This nucleus is also involved in the mediation of inspiration (in-breathing) with a part of the ventral r. nucleus. The afferent pathways to the LRN come from the spinal cord and higher brain structures. Most of the afferents come from the ipsilateral dorsal horn of the spinal cord and project exclusively to the parts of the LRN that do not receive input from the cortex. The spinal cord projections terminate mostly in the parvocellular region along with the adjacent magnocellular cells. This implies that most input from the spinal cord is relayed into the vermis[WP] lateral medullary reticular complex - + @@ -529861,7 +529846,7 @@ - + FMA @@ -529904,7 +529889,7 @@ - + https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3413098&group_id=36855 TAO:0000219 ZFA:0000219 @@ -529913,7 +529898,7 @@ UBERON:0009776 intermediate reticular formation - + @@ -529926,7 +529911,7 @@ - + GOC:pr brainspan.org @@ -530002,7 +529987,7 @@ - + @@ -530015,7 +530000,7 @@ - + A serous sac that has the pleura and the pleural cavity as parts. despite its name the class EHDAA2:0004737 is not a true cavity, it corresponds to what we call the sac EHDAA2:0004737 @@ -530026,24 +530011,24 @@ pleural sac - + - + - + FMA - + FMA-abduced-lr @@ -530235,8 +530220,8 @@ - - + + The frontal part of the cingulate cortex that resembles a collar form around the corpus callosum. It includes both the ventral and dorsal areas of the cingulate cortex. Wikipedia:File:Gray727.svg. BIRNLEX:936 @@ -530249,24 +530234,24 @@ anterior cingulate cortex http://upload.wikimedia.org/wikipedia/commons/2/22/Gray727_anterior_cingulate_cortex.png - + - + - + BTO - + Wikipedia @@ -530353,14 +530338,14 @@ - - - - - - - - + + + + + + + + Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus. DHBA:10666 TAO:0001441 @@ -530372,84 +530357,84 @@ lower rhombic lip - + - + - + - + - + - + - + - + - + ZFA - + ZFA - + ZFA - + ZFA - + ZFA - + ZFA - + ZFA - + ZFA @@ -530471,9 +530456,9 @@ - - - + + + Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary. DHBA:10665 EHDAA2:0000229 @@ -530489,34 +530474,34 @@ upper rhombic lip - + - + - + - + ZFA - + ZFA - + ZFA-def @@ -530693,7 +530678,7 @@ - + @@ -530712,14 +530697,14 @@ UBERON:0009844 urogenital sinus lumen - + - + EHDAA2 @@ -530734,7 +530719,7 @@ - + @@ -530750,7 +530735,7 @@ UBERON:0009845 urogenital sinus mesenchyme - + @@ -530762,7 +530747,7 @@ - + PMID:18977204 @@ -530804,8 +530789,8 @@ - - + + An epithelium that is part of a embryonic cloaca. cloacal epithelium EHDAA2:0004585 @@ -530813,24 +530798,24 @@ UBERON:0009846 embryonic cloacal epithelium - + - + - + EHDAA2 - + EHDAA2 @@ -530866,8 +530851,8 @@ - - + + @@ -530880,24 +530865,24 @@ UBERON:0009847 prostate field - + - + - + PMID:18977204 - + PMID:18977204 @@ -530931,7 +530916,7 @@ - + @@ -530960,14 +530945,14 @@ UBERON:0009848 zona limitans intrathalamica - + - + ZFA @@ -531205,7 +531190,7 @@ - + @@ -531236,14 +531221,14 @@ body of uterus https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.2/assets/3d-vh-f-uterus.glb - + - + FMA @@ -531493,8 +531478,8 @@ - - + + @@ -531511,24 +531496,24 @@ UBERON:0009858 outer fibrous layer of periosteum - + - + - + FMA - + Wikipedia @@ -531740,7 +531725,7 @@ - + @@ -531765,14 +531750,14 @@ UBERON:0009865 Hatschek's pit - + - + Wikipedia @@ -531794,21 +531779,21 @@ - + An unpaired kidney whose duct opens into the anterior pharynx. It can be seen as a deep ciliated fossa on the dorsal midline of the buccal cavity (mouth). Among other things, it secrets mucus which entraps food particles from the water[WP]. uberon UBERON:0009866 Hatschek's nephridium - + - + Wikipedia @@ -531830,19 +531815,19 @@ - + uberon UBERON:0009867 Hatschek's diverticulum - + - + Wikipedia @@ -532063,7 +532048,7 @@ - + @@ -532091,14 +532076,14 @@ UBERON:0009877 metapodium region - + - + PHENOSCAPE:ni @@ -532566,7 +532551,7 @@ - + EFO:0003704 TAO:0005041 @@ -532577,14 +532562,14 @@ anterior lateral plate mesoderm - + - + ZFA @@ -532664,7 +532649,7 @@ - + @@ -532694,7 +532679,7 @@ medullary ray - + @@ -532707,7 +532692,7 @@ - + MP @@ -532977,9 +532962,9 @@ - - - + + + @@ -532999,34 +532984,34 @@ UBERON:0009889 secondary heart field - + - + - + - + GO:0003129 - + PMID:17276708 - + PMID:17276708 @@ -533497,7 +533482,7 @@ - + EFO:0003705 TAO:0005042 ZFA:0005042 @@ -533507,7 +533492,7 @@ posterior lateral plate mesoderm - + @@ -533520,7 +533505,7 @@ - + ZFA @@ -533713,7 +533698,7 @@ - + @@ -533752,14 +533737,14 @@ Alternate definition: One of the subdivisions of the kidney, consisting of a medullary ray and that portion of the convoluted port (renal corpuscles and convoluted tubules) associated with its collecting duct. -http://www.mondofacto.com/facts/dictionary?lobulus+corticalis+renalis renal lobule - + - + FMA @@ -533914,7 +533899,7 @@ - + @@ -533940,14 +533925,14 @@ kidney corticomedullary boundary - + - + MP @@ -534051,14 +534036,14 @@ - + EHDAA2:0001315 EHDAA:1122 uberon UBERON:0009920 optic neural crest - + @@ -534071,7 +534056,7 @@ - + EHDAA2 @@ -534160,7 +534145,7 @@ - + The main olfactory bulb has a multi-layered cellular architecture. In order from surface to the center the layers are: Glomerular layer, External plexiform layer, Mitral cell layer, Internal plexiform layer, Granule cell layer[WP]. @@ -534175,14 +534160,14 @@ UBERON:0009951 main olfactory bulb - + - + cjm @@ -534236,7 +534221,7 @@ - + A narrow layer of cells located between the granule cell layer and hilus of the dentate gyrus, where adult neurogenesis occurs. SGZ EMAPA:35831 @@ -534250,14 +534235,14 @@ dentate gyrus subgranular zone https://upload.wikimedia.org/wikipedia/commons/9/99/Doublecortin_expression-2.png - + - + granule cells Wikipedia @@ -534358,21 +534343,21 @@ - + A vertebrate nasal chemosensory system that is responsible for detecting intraspecific pheromonal cues as well as environmental odorants. check relationship to olfactory system. Evolution: The morphological components of the VNS are found only in tetrapods, but the genetic components of the system have been found in teleost fish, in addition to tetrapods. In tetrapods, the VNS was thought to be the olfactory system for detecting pheromones, while the main olfactory system detected general odorants (Scalia and Winans 1975). However, experimental evidence suggests that there is not such a clear functional distinction (Restrepo et al. 2004; Baxi, Dorries, and Eisthen 2006; Spehr et al. 2006; Kelliher 2007). Sea lampreys produce unique bile acids which act as pheromones both in migration and mate finding (Li, Sorensen, and Gallaher 1995; Li et al. 2002; Siefkes and Li 2004). However, bile acids in teleost fish are known to require components of the main olfactory signal transduction pathway (Hansen et al. 2003), and interruption of the VNS signal transduction pathway had no effect on bile acid olfactory response (Hansen et al. 2003)[Grus - EVOLUTION OF THE VOMERONASAL SYSTEM VIEWED THROUGH SYSTEM-SPECIFIC GENES] uberon UBERON:0009954 vomeronasal system - + - + Wikipedia @@ -534487,21 +534472,21 @@ - + A specialised sensory organ located in the subepidermal connective tissue at the rostral end of late larval and adult amphioxus. They consist of between 1 and 4 nerve cells with axons, each with 2 cilia, surrounded by up to 7 sheath cells. The cilia extend into a protrusion of the basal lamina which surrounds each corpuscle. The axonal process contributes to the rostral nerve. organ of de Quatrefage uberon UBERON:0009956 corpuscle of de Quatrefage - + - + PMID:11523831 @@ -534517,21 +534502,21 @@ - + uberon pre-oral pit UBERON:0009957 Development: joins with Hatschek's diverticulum to form Hatschek's pit in the adult. Location: anterior to the mouth. ciliated pit - + - + Wikipedia @@ -534540,10 +534525,10 @@ - + - - + + @@ -534563,7 +534548,7 @@ UBERON:0009958 bladder lumen - + @@ -534572,30 +534557,30 @@ - + - + - + FMA - + FMA - + EHDAA2 @@ -534658,7 +534643,7 @@ - + @@ -534674,14 +534659,14 @@ UBERON:0009959 lumen of oropharynx - + - + EHDAA2 @@ -534721,7 +534706,7 @@ - + A circular muscle layer of muscular coat that is part of a esophagus. EMAPA:37523 FMA:67605 @@ -534733,14 +534718,14 @@ UBERON:0009960 esophagus smooth muscle circular layer - + - + MA @@ -534781,7 +534766,7 @@ - + EMAPA:37524 FMA:63573 MA:0001575 @@ -534792,14 +534777,14 @@ UBERON:0009961 esophagus smooth muscle longitudinal layer - + - + MA @@ -534975,7 +534960,7 @@ - + A conducting pathway in the conducting tissue of heart through which electrical activity spreads from the SA node to the AV node. include 3 subtypes? evidence is sparse [http://www.gpnotebook.co.uk/simplepage.cfm?ID=-483065798] There is some functional evidence for the existence of specialized conducting pathways within the atria (termed internodal tracts), although this is controversial @@ -534988,7 +534973,7 @@ UBERON:0009966 internodal tract - + @@ -535001,7 +534986,7 @@ - + FMA @@ -535036,7 +535021,7 @@ - + EMAPA:37751 FMA:62815 @@ -535053,7 +535038,7 @@ spleen venous sinus - + @@ -535066,7 +535051,7 @@ - + MA @@ -535115,8 +535100,8 @@ - - + + consider merging into developed structure EHDAA2:0001527 EHDAA:9876 @@ -535125,11 +535110,11 @@ UBERON:0009968 primitive superior sagittal sinus - + - + @@ -535142,13 +535127,13 @@ - + EHDAA2 - + EHDAA2 @@ -535343,7 +535328,7 @@ - + @@ -535375,14 +535360,14 @@ ureteropelvic junction - + - + MP @@ -535426,7 +535411,7 @@ - + @@ -535459,14 +535444,14 @@ ureterovesical junction - + - + MP @@ -535512,7 +535497,7 @@ - + @@ -535527,7 +535512,7 @@ UBERON:0009974 lumen of Rathke's pouch - + @@ -535540,7 +535525,7 @@ - + EHDAA2-modified @@ -536057,7 +536042,7 @@ - + The lateral epicondyle of the femur, smaller and less prominent than the medial epicondyle, gives attachment to the fibular collateral ligament of the knee-joint. Directly below it is a small depression from which a smooth well-marked groove curves obliquely upward and backward to the posterior extremity of the condyle. @@ -536075,7 +536060,7 @@ lateral epicondyle of femur http://upload.wikimedia.org/wikipedia/commons/5/53/Gray246.png - + @@ -536088,7 +536073,7 @@ - + FMA @@ -536139,7 +536124,7 @@ - + The medial epicondyle of the femur is a bony protrusion located on the medial side of the bone's distal end. Located above the medial condyle, it bears an elevation, the adductor tubercle, which serves for the attachment of the superficial part, or 'tendinous insertion', of the adductor magnus. This tendinous part here forms an intermuscular septum which forms the medial separation between the thigh's flexors and extensors. Behind it, and proximally to the medial condyle is a rough impression which gives origin to the medial head of the Gastrocnemius. FMA:32864 @@ -536155,7 +536140,7 @@ medial epicondyle of femur http://upload.wikimedia.org/wikipedia/commons/e/e0/Gray345.png - + @@ -536168,7 +536153,7 @@ - + FMA @@ -536773,7 +536758,7 @@ - + @@ -536788,14 +536773,14 @@ placental labyrinth villous - + - + MP @@ -536818,7 +536803,7 @@ - + @@ -536831,14 +536816,14 @@ placenta intervillous maternal lacunae - + - + MP @@ -536855,7 +536840,7 @@ - + @@ -536868,14 +536853,14 @@ placenta fetal blood space - + - + MP @@ -536993,7 +536978,7 @@ - + A group of neurons in the basal forebrain that has wide projections to the neocortex and is rich in acetylcholine and choline acetyltransferase. It undergoes degeneration in paralysis agitans and Alzheimer's disease. rich in acetylcholine and choline acetyltransferase MA has basal nucleus as synonym for BG. @@ -537036,14 +537021,14 @@ basal nucleus of telencephalon http://upload.wikimedia.org/wikipedia/commons/3/36/Substantia_innominata_MRI.PNG - + - + WP @@ -537201,14 +537186,14 @@ - + - + Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum. it is necessary to introduce two classes, one representing an individual basal ganglion, another representing the aggregate structure, in order to have consistent classification amongst AOs (e.g. in MA the aygdala is part of the BG, in FMA and BTO it is a subclass). Apart from achieving this consistency, the value of having two distinct classes is questionable, since the BG-plural is trivially the collection of all BGs-singular. it would be better for all AOs to decide on one single way of doing this. Do not merge until this is done. @@ -537243,11 +537228,11 @@ collection of basal ganglia - + - + @@ -537260,13 +537245,13 @@ - + FMA - + MA NIF @@ -537419,14 +537404,14 @@ - + - + An elongate paired tissue ventral to the kidneys and partialy enveloping the anterior gonads in Elasmobranchii. Apparently important to the immune system. subgonal organ @@ -537434,24 +537419,24 @@ UBERON:0010014 epigonal organ - + - + - + Wikipedia - + Honma1983 @@ -537615,8 +537600,8 @@ - - + + The spiral valve alternately blocks & unblocks the entrances to the left and right pulmonary arches (sending unoxygenated blood to the skin & lungs). The spiral valve is considered to have evolved from the right member of the four embryonic endocardial ridges (Goodrich, 1930 - via Morris 1974) @@ -537627,11 +537612,11 @@ UBERON:0010018 spiral valve of conus arteriosus - + - + @@ -537644,13 +537629,13 @@ - + AAO - + NAS @@ -537739,7 +537724,7 @@ - + The dorsal portion of the embryonic first endodermal pharyngeal pouch; it develops into the middle ear cavity. The tympanic cavity and auditory tube of an amniote develop from the first embryonic pharyngeal pouch, so they are homologous to the first gill pouch, or spiracle, of a fish. We are uncertain whether this homology strictly applies to the middle ear cavity and auditory tube of lissamphibians, which show certain peculiarities in their development.[well established][VHOG] EHDAA2:0004115 @@ -537755,7 +537740,7 @@ UBERON:0010020 tubotympanic recess epithelium - + @@ -537768,7 +537753,7 @@ - + EHDAA2 ISBN:0073040584 PMID:11237469 @@ -537930,7 +537915,7 @@ - + Derivatives of the dorsal wings include the inferior parathyroid glands[WP] in mammals, the cranial dorsal aspect of the third pouch generates the inferior parathyroids (or parathyroid III) EHDAA2:0000409 EMAPA:16758 @@ -537945,14 +537930,14 @@ UBERON:0010025 dorsal part of pharyngeal pouch 3 - + - + EHDAA2 @@ -537981,7 +537966,7 @@ - + The ventral wings fuse to form the cytoreticular cells of the thymus[WP] the caudal ventral part of the pouch gives rise to the thymus epithelium EHDAA2:0002173 EMAPA:16759 @@ -537996,14 +537981,14 @@ UBERON:0010026 ventral part of pharyngeal pouch 3 - + - + EHDAA2 @@ -538159,7 +538144,7 @@ - + @@ -538196,7 +538181,7 @@ anterior part of tongue https://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg - + @@ -538212,7 +538197,7 @@ - + ISBN:1607950324 @@ -538307,8 +538292,8 @@ - - + + The Posterior tongue, or pharyngeal part, is the part of the tongue behind the terminal sulcus. At its root, it is directed backward, and connected with the hyoid bone by the Hyoglossi and Genioglossi muscles and the hyoglossal membrane; with the epiglottis by three folds (glossoepiglottic) of mucous membrane; with the soft palate by the glossopalatine arches; and with the pharynx by the Constrictores pharyngis superiores and the mucous membrane. It is derived primarily from the third pharyngeal arch. (The second arch has a substantial contribution during fetal development, but this later atrophies. The fourth arch may also contribute, depending upon how the boundaries of the tongue are defined.). EMAPA:37438 FMA:54645 @@ -538336,24 +538321,24 @@ posterior part of tongue https://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg - + - + - + FMA - + Wikipedia @@ -538468,7 +538453,7 @@ - + @@ -538487,7 +538472,7 @@ copula linguae http://upload.wikimedia.org/wikipedia/commons/8/85/Gray980.png - + @@ -538500,7 +538485,7 @@ - + EHDAA2 @@ -538530,7 +538515,7 @@ - + A group of cells located ventral to the decussation of the superior cerebellar peduncle in the mouse ( Paxinos-2001 ) and rat ( Swanson-1998 ). BAMS:AT BAMS:ATg @@ -538543,7 +538528,7 @@ UBERON:0010036 anterior tegmental nucleus - + @@ -538556,7 +538541,7 @@ - + NN @@ -538596,8 +538581,8 @@ - - + + The fundus glands (or fundic glands, or gastric glands) are found in the body and fundus of the stomach. They are simple tubes, two or more of which open into a single duct. Consider FMA:14923 ! Principal gland of fundus of stomach. Added part_of to mucosa to be consistent with FMA pattern (note that Kardong places this in the glandular epithelium) EMAPA:27161 @@ -538616,24 +538601,24 @@ fundic gastric gland http://upload.wikimedia.org/wikipedia/commons/d/d7/Fundic_gland_polyp_%281%29.jpg - + - + - + ISBN:0073040584 - + ISBN:0073040584 @@ -538858,8 +538843,8 @@ - - + + The sum total of mesenchymal tissue in the pharyngeal arch region. Pharyngeal mesenchyme is undifferentiated, loose connective tissue derived mostly from mesoderm, and also contains ectodermally derived neural crest cells. EHDAA2:0001459 EMAPA:16550 @@ -538871,11 +538856,11 @@ UBERON:0010046 entire pharyngeal arch associated mesenchyme - + - + @@ -538888,13 +538873,13 @@ - + EHDAA2 - + cjm @@ -538984,7 +538969,7 @@ - + A gland situated on the upper lip posterior to the eye, found in non-venomous snakes. Releases secretion via duct adjacent to posterior maxillary teeth. Wikipedia:Duvernoy's_gland uberon @@ -538992,14 +538977,14 @@ positioned posterior to the eye, encased in a thin cover of connective tissue, and consists mostly of serous cells. A single, short duct extends anteromedially from the lumen of the gland to the base of the posterior fangs.[WP] Duvernoy's gland - + - + Wikipedia @@ -539313,7 +539298,7 @@ - + EHDAA2:0000799 EMAPA:17352 SCTID:361420009 @@ -539322,7 +539307,7 @@ UBERON:0010057 hypopharyngeal eminence - + @@ -539335,7 +539320,7 @@ - + EHDAA2 @@ -539352,13 +539337,13 @@ - + EHDAA2:0004610 uberon UBERON:0010059 hypoglossal cord - + @@ -539371,7 +539356,7 @@ - + EHDAA2 @@ -539544,8 +539529,8 @@ - - + + EHDAA2:0004117 EMAPA:32801 FMA:285217 @@ -539556,11 +539541,11 @@ UBERON:0010062 pharyngotympanic tube epithelium - + - + @@ -539573,13 +539558,13 @@ - + cjm - + EHDAA2 @@ -539609,13 +539594,13 @@ - + EHDAA2:0004116 uberon UBERON:0010063 tympanic cavity epithelium - + @@ -539628,7 +539613,7 @@ - + EHDAA2 @@ -539655,7 +539640,7 @@ - + An anatomical space with at least one opening to another space or the exterior. AEO:0000221 EHDAA2:0004616 @@ -539663,14 +539648,14 @@ UBERON:0010064 open anatomical space - + - + cjm @@ -539689,13 +539674,13 @@ - + EHDAA2:0004114 uberon UBERON:0010065 auditory meatus epithelium - + @@ -539708,7 +539693,7 @@ - + EHDAA2 PMID:16313389 @@ -539987,7 +539972,7 @@ - + @@ -540004,14 +539989,14 @@ UBERON:0010074 chromaffin system - + - + cjm @@ -540152,7 +540137,7 @@ - + Consider merging with capillary layer. Consider choriocapillaris complex A plexus of capillaries that is located anteromedial to the eye. It is a capillary layer in the choroid. It is in contact with the basal surface of the retinal pigmented epithelium and supplies the photoreceptors with oxygen and nutrients. The fused basement membrane of this capillary layer and the pigmented epithelium is called Bruchs's membrane.[XAO:0004176]. Is an ocular vasculature that develops adjacent to the pigment epithelium of the eye. The optic choroid vascular plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. The plexus supplies blood to the retina[ZFA:0005094]. @@ -540171,7 +540156,7 @@ UBERON:0010078 optic choroid vascular plexus - + @@ -540190,7 +540175,7 @@ - + ZFA @@ -540321,9 +540306,9 @@ - - - + + + @@ -540337,34 +540322,34 @@ UBERON:0010083 future dermis - + - + - + - + EHDAA2 - + EHDAA2 - + XAO @@ -540391,9 +540376,9 @@ - - - + + + @@ -540406,34 +540391,34 @@ UBERON:0010084 future diaphragm - + - + - + - + EHDAA2 - + PMID:23586979 - + PMID:23586979 @@ -540845,7 +540830,7 @@ - + @@ -540865,14 +540850,14 @@ UBERON:0010128 future pterygopalatine ganglion - + - + EHDAA2 @@ -540952,7 +540937,7 @@ - + @@ -540973,14 +540958,14 @@ UBERON:0010129 femur cartilage element - + - + EMAPA @@ -541081,8 +541066,8 @@ - - + + A small blood vessel in the abdomen that supplies blood directly to the pylorus (distal part of the stomach) and proximal part of the duodenum, and indirectly to the pancreatic head (via the anterior and posterior superior pancreaticoduodenal arteries). EHDAA2:0000310 @@ -541098,24 +541083,24 @@ gastroduodenal artery http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png - + - + - + EHDAA2 - + FMA @@ -541367,7 +541352,7 @@ - + @@ -541376,7 +541361,7 @@ - + A sex cord that is part of a indifferent gonad. note that this represents the indifferent structure. EHDAA2:0004051 @@ -541386,7 +541371,7 @@ UBERON:0010141 primitive sex cord of indifferent gonad - + @@ -541395,20 +541380,20 @@ - + - + EHDAA2 - + EHDAA2 @@ -541531,8 +541516,8 @@ - - + + The numerous mucous-secreting glands found in several female mammalian species (including rodents and humans) on the anterior wall of the vagina, around the lower end of the urethra, and possessing a common paraurethral duct which opens (on each side) near the external urethral orifice; they are homologous with the prostate gland in males, have highly variable anatomy, and are believed to be the source of the female ejaculate, a lubricating fluid with a similar consistency to male prostatic fluid that is expelled through the urethra during sexual stimulation; like the male prostate, these glands are susceptible to infection (skenitis), cyst development, and cancer. in MP female urethral gland, Skene gland and paraurethral gland are exact syns. Note that NCITA seems to use the term in a more generic way, as a parent for skene gland, cowper gland (which may be the same as the male bulbo-urethral gland) female urethral gland @@ -541562,24 +541547,24 @@ paraurethral gland https://upload.wikimedia.org/wikipedia/commons/b/b8/Skenes_gland.jpg - + - + - + FMA - + PMID:10668204 @@ -541718,7 +541703,7 @@ - + The Skene's ducts are a pair of ducts leading from the Skene's glands to the surface of the vulva, to the left and right of the urethral opening. FMA has two classes that may be equivalent here UBERON:0035064 @@ -541738,14 +541723,14 @@ paraurethral duct https://upload.wikimedia.org/wikipedia/commons/b/b8/Skenes_gland.jpg - + - + PMID:10668204 @@ -542112,7 +542097,7 @@ - + The inner mucosa of the fourth stomach chamber of a ruminant produces rennet. BTO:0001168 Wikipedia:Rennet @@ -542123,14 +542108,14 @@ UBERON:0010154 inner lining mucosa of the abomasum - + - + BTO @@ -542591,7 +542576,7 @@ - + @@ -542609,14 +542594,14 @@ post-anal tail tip - + - + MA @@ -543097,7 +543082,7 @@ - + @@ -543121,14 +543106,14 @@ bulb of aorta - + - + FMA @@ -543194,7 +543179,7 @@ - + @@ -543209,14 +543194,14 @@ sinotubular junction - + - + MP @@ -543778,7 +543763,7 @@ - + @@ -543795,7 +543780,7 @@ pair of dorsal aortae - + @@ -543808,7 +543793,7 @@ - + EHDAA2 @@ -543831,7 +543816,7 @@ - + @@ -543843,14 +543828,14 @@ UBERON:0010191 aortic system - + - + Wikipedia @@ -543899,7 +543884,7 @@ - + A portal vein that empties into capillaries within the kidneys. function not well understood. TAO:0000577 @@ -543909,7 +543894,7 @@ UBERON:0010193 renal portal vein - + @@ -543922,7 +543907,7 @@ - + ZFA @@ -544052,7 +544037,7 @@ - + The initial part of the entire common carotid artery ending with the point where the artery bifurcates into an external carotid artery and an internal carotid artery. EHDAA2:0000306 FMA:69323 @@ -544062,14 +544047,14 @@ UBERON:0010197 trunk of common carotid artery - + - + FMA @@ -544181,7 +544166,7 @@ - + @@ -544199,7 +544184,7 @@ UBERON:0010202 lateral line - + @@ -544212,7 +544197,7 @@ - + ZFA @@ -544449,8 +544434,8 @@ - - + + The plica semilunaris is a small fold of bulbar conjunctiva on the medial canthus of the eye. It is loose, so that eye movements are not restricted. It is the vestigial remnant of the nictitating membrane FMA:59045 @@ -544465,11 +544450,11 @@ plica semilunaris of conjunctiva http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray1205.png - + - + @@ -544482,13 +544467,13 @@ - + FMA - + Wikipedia @@ -544564,7 +544549,7 @@ - + @@ -544584,14 +544569,14 @@ UBERON:0010210 blood clot - + - + BTO @@ -544677,7 +544662,7 @@ - + @@ -544699,14 +544684,14 @@ UBERON:0010212 laryngeal apparatus - + - + EHDAA2 @@ -544729,30 +544714,30 @@ - - + + uberon UBERON:0010213 laryngeal pre-cartilage condensation - + - + - + EHDAA2-abstracted - + EHDAA2-abstracted @@ -544775,8 +544760,8 @@ - - + + Paired primordial elevations, on either side of the embryonic larynx, within which the arytenoid cartilages are formed. EHDAA2 and EMAPA appear to be inconsistent EHDAA2:0000146 @@ -544784,11 +544769,11 @@ UBERON:0010215 arytenoid swellings - + - + @@ -544801,13 +544786,13 @@ - + EHDAA2 - + EHDAA2 @@ -544841,7 +544826,7 @@ - + EHDAA2:0000144 EMAPA:17387 VHOG:0000998 @@ -544850,14 +544835,14 @@ UBERON:0010220 arytenoid pre-cartilage condensation - + - + EHDAA2 @@ -544874,35 +544859,35 @@ - + - - - + + + EHDAA2:0004085 uberon UBERON:0010221 Many sources say: thyroid cartilage from arch 4 other laryngeal cartilage (cricoid/arytenoid) from 6? laryngeal associated mesenchyme - + - + - + - + @@ -544915,25 +544900,25 @@ - + EHDAA2 - + Wikipedia - + Wikipedia - + Wikipedia @@ -545113,7 +545098,7 @@ - + @@ -545131,14 +545116,14 @@ UBERON:0010227 future cardiac atrium - + - + ZFA @@ -545281,7 +545266,7 @@ - + @@ -545306,14 +545291,14 @@ eyeball of camera-type eye - + - + FMA @@ -545464,11 +545449,11 @@ - - - - - + + + + + The palatopharyngeus or palatopharyngeal or pharyngopalatinus muscle is a long, fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the palatopharyngeal arch. Palatopharyngeus is a muscle that attaches to the palatine bones, soft palate, and pharynx and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED] @@ -545487,23 +545472,23 @@ palatopharyngeus muscle http://upload.wikimedia.org/wikipedia/commons/1/1b/Musculuspalatopharyngeus.png - + - + - + - + - + @@ -545522,34 +545507,34 @@ - + FMA-abduced-lr - + vagus nerve and cranial accessory nerve dbpedia - + vagus nerve and cranial accessory nerve dbpedia - + palatine aponeurosis and hard palate dbpedia - + Upper border of thyroid cartilage dbpedia @@ -545610,8 +545595,8 @@ - - + + @@ -545640,11 +545625,11 @@ uvular muscle http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray169.png - + - + @@ -545657,13 +545642,13 @@ - + dbpedia - + dbpedia @@ -545768,7 +545753,7 @@ - + A variant of the ascending colon in ruminants and pigs. Consider merging with ascending colon @@ -545781,14 +545766,14 @@ UBERON:0010239 spiral colon - + - + Wikipedia @@ -546107,7 +546092,7 @@ - + A choroid tapetum lucidum that is made of a palisade of cells containing stacks of flat hexagonal crystals of guanine. @@ -546119,14 +546104,14 @@ UBERON:0010246 choroidal guanine tapetum - + - + doi:10.1017/S0025315400024760 @@ -546345,7 +546330,7 @@ - + The middle meningeal artery is typically the third branch of the first part (retromandibular part) of the maxillary artery; one of the two terminal branches of the external carotid artery. After branching off the maxillary artery in the infratemporal fossa, it runs through the foramen spinosum to supply the dura mater and the calvaria. The middle meningeal artery is the largest of the three (paired) arteries which supply the meninges, the others being the anterior meningeal artery and the posterior meningeal artery. In approximately half of subjects it branches into an accessory meningeal artery. The middle meningeal artery runs beneath the pterion. It is vulnerable to injury at this point, where the skull is thin. Rupture of the artery may give rise to an epidural hematoma. FMA:49711 @@ -546358,14 +546343,14 @@ middle meningeal artery http://upload.wikimedia.org/wikipedia/commons/1/1e/Middle_meningeal_artery.png - + - + FMA @@ -546388,7 +546373,7 @@ - + A meningeal branch to the dura mater arising from the anterior ethmoidal artery. this needs checking as part of a general revision of the blood vessels and their branches - unclear if the anterior meningeal artery should be treated separately from the anterior ethmoidal artery (ie as a branch) or the same thing @@ -546411,14 +546396,14 @@ anterior meningeal artery http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png - + - + Wikipedia @@ -546495,7 +546480,7 @@ - + @@ -546505,8 +546490,8 @@ - - + + @@ -546519,11 +546504,11 @@ UBERON:0010252 1st arch mandibular mesenchyme from neural crest - + - + @@ -546536,13 +546521,13 @@ - + EHDAA2 - + EHDAA2 @@ -546561,7 +546546,7 @@ - + @@ -546571,32 +546556,32 @@ - - + + Mesenchyme that develops_from a neural crest and is part of a 1st arch maxillary mesenchyme. EHDAA2:0000044 uberon UBERON:0010253 1st arch maxillary mesenchyme from neural crest - + - + - + EHDAA2 - + EHDAA2 @@ -546615,7 +546600,7 @@ - + @@ -546626,8 +546611,8 @@ - - + + @@ -546644,24 +546629,24 @@ UBERON:0010254 2nd arch mesenchyme from neural crest - + - + - + EHDAA2 - + EHDAA2 @@ -546680,7 +546665,7 @@ - + @@ -546691,7 +546676,7 @@ - + Mesenchyme that develops_from a neural crest and is part of a 3rd arch mesenchyme. In all vertebrates, the pharyngeal apparatus develops from a series of bulges found on the lateral surface of the head, the pharyngeal arches, which consist of a number of different embryonic cell types. Each arch has an external covering of ectoderm and inner covering of endoderm, and between these a mesenchymal filling of neural crest with a central core of mesoderm.[well established][VHOG] EHDAA2:0000083 @@ -546706,14 +546691,14 @@ UBERON:0010255 3rd arch mesenchyme from neural crest - + - + EHDAA2 @@ -546754,7 +546739,7 @@ - + @@ -546765,8 +546750,8 @@ - - + + Mesenchyme that develops_from a neural crest and is part of a 4th arch mesenchyme. In all vertebrates, the pharyngeal apparatus develops from a series of bulges found on the lateral surface of the head, the pharyngeal arches, which consist of a number of different embryonic cell types. Each arch has an external covering of ectoderm and inner covering of endoderm, and between these a mesenchymal filling of neural crest with a central core of mesoderm.[well established][VHOG] EHDAA2:0000098 @@ -546781,24 +546766,24 @@ UBERON:0010256 4th arch mesenchyme from neural crest - + - + - + EHDAA2 - + EHDAA2 @@ -546839,7 +546824,7 @@ - + @@ -546850,8 +546835,8 @@ - - + + Mesenchyme that develops_from a neural crest and is part of a 6th arch mesenchyme. EHDAA2:0004077 neural crest derived arch 6 mesenchyme @@ -546861,24 +546846,24 @@ UBERON:0010257 6th arch mesenchyme from neural crest - + - + - + EHDAA2 - + EHDAA2 @@ -546905,7 +546890,7 @@ - + @@ -546918,14 +546903,14 @@ UBERON:0010258 mesenchyme from rhombencephalic neural crest - + - + EHDAA2 @@ -547112,7 +547097,7 @@ - + @@ -547129,7 +547114,7 @@ UBERON:0010264 hepatopancreas - + @@ -547142,7 +547127,7 @@ - + BTO @@ -547185,7 +547170,7 @@ - + @@ -547200,14 +547185,14 @@ UBERON:0010266 arthropod hepatopancreas - + - + PMID:18025161 @@ -547266,7 +547251,7 @@ - + FMA:256524 SCTID:315673007 internal part of filum terminale @@ -547274,14 +547259,14 @@ UBERON:0010269 filum terminale internum - + - + FMA @@ -547298,7 +547283,7 @@ - + FMA:256526 SCTID:315573001 external part of filum terminale @@ -547306,14 +547291,14 @@ UBERON:0010270 filum terminale externum - + - + FMA @@ -547379,7 +547364,7 @@ - + A group of bones comprised of hyoid body and two pairs of cornua (i.e. greater cornua and lesser cornua), and lies just below the tongue, above the thyroid cartilage. Apparatus located in the floor of the mouth, under the mandibular arcade. The apparatus consists of a central corpus and four pairs of processes. This apparatus serves as the site of insertion for a variety of muscles associated with movements of the tongue and as the origin of the m. hyoglossus.[AAO] relationship loss: part_of hyolaryngeal complex (AAO:0000226)[AAO] @@ -547398,14 +547383,14 @@ UBERON:0010272 hyoid apparatus - + - + AAO @@ -547562,7 +547547,7 @@ - + @@ -547579,14 +547564,14 @@ mesocardium - + - + EHDAA2 @@ -547608,8 +547593,8 @@ - - + + There are two Pericardial sinuses: transverse and oblique. The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium and is known as the oblique sinus. The passage between the venous and arterial mesocardiabi.e. , between the aorta and pulmonary artery in front and the superior vena cava behindbis termed the transverse sinus. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside. Can be used to pass ligature during cardiac surgery. SCTID:314273005 Wikipedia:Pericardial_sinus @@ -547624,24 +547609,24 @@ pericardial sinus http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png - + - + - + FMA-abduced - + MA-abduced @@ -547780,8 +547765,8 @@ - - + + Portion of tissue that is dorsolateral to the floor plate and part of the midbrain. DHBA:12322 EFO:0003567 @@ -547795,11 +547780,11 @@ midbrain basal plate - + - + @@ -547812,13 +547797,13 @@ - + EHDAA2 - + ZFA @@ -547847,7 +547832,7 @@ - + Portion of neural tube that gives rise to the midbrain. we follow ZFA in temporally dividing midbrain NT from presumptive midbrain, but in future this may be collapsed TAO:0007039 @@ -547856,14 +547841,14 @@ UBERON:0010286 midbrain neural tube - + - + ZFA @@ -547879,7 +547864,7 @@ - + DHBA:12863 FMA:53419 SCTID:280191009 @@ -547890,7 +547875,7 @@ UBERON:0010287 motor root of facial nerve - + @@ -547903,7 +547888,7 @@ - + Wikipedia @@ -547938,7 +547923,7 @@ - + Circular cartilage ringing the posterior portion of the eye in the sclera. Supports the eye. consider distinguishing cup from predecessor of ossicle. Hall: The scleral cartilaginous cup is a distinctly sepa- rate element composed of hyaline cartilage relationship to sclera - overlaps? @@ -547955,7 +547940,7 @@ UBERON:0010289 scleral cartilage - + @@ -547968,7 +547953,7 @@ - + cjm @@ -548025,7 +548010,7 @@ - + A bony plate around the eyes, are situated at the corneal-scleral limbus. They do not articulate with other elements of the skull. Typically, the scleral ossicles overlap the rim of a cup of scleral cartilage that supports the eyeball. Situated near the equator of the eye and may slightly overlap the rim of scleral cartilage. @@ -548039,14 +548024,14 @@ UBERON:0010290 scleral ossicle - + - + ZFA @@ -548087,20 +548072,20 @@ - + Wikipedia:Sclera#Histology uberon UBERON:0010291 layer of sclera - + - + cjm @@ -548384,21 +548369,21 @@ - + An eye adnexal structure, but not necessarily part of the eyeball uberon UBERON:0010296 scleral skeletal element - + - + PMID:17051547 @@ -548416,8 +548401,8 @@ - - + + A pair of small dish-shaped bones that cap the anterior and posterior margin of the eyeball.[TAO] The scleral ossicles [of teleosts] are reported to form indirectly by endochondral (Hall and Miyake, 1992) or by perichondral ossification (Patterson, 1977) from a cartilage element that is also present in the sclera. This is unlike the scleral ossicles of reptiles, which develop directly from ectomesenchyme (i.e., intramembranous ossification) and independently from the scleral cartilage @@ -548428,11 +548413,11 @@ UBERON:0010297 endochondral scleral ossicle - + - + @@ -548445,13 +548430,13 @@ - + ZFA - + ZFA @@ -548491,7 +548476,7 @@ - + The scleral ossicles [in reptiles] uberon @@ -548499,7 +548484,7 @@ are of dermal (neural crest) origin, develop intramembranously within the scleral mesenchyme, and are induced to form by overlying (transient) epithelial scleral papillae (Nelson, 1942; Murray, 1943; Fyfe and Hall, 1981, 1983; Hall, 1981, 2005; Pinto and Hall, 1991) intramembranous scleral ossicle - + @@ -548512,7 +548497,7 @@ - + PMID:16496288 @@ -548585,7 +548570,7 @@ - + A single extraembryonic epithelium, which closes the germband dorsally. May be obsoleted once added to insect ontology. Coordinate with cell type in CL BTO:0004800 @@ -548597,7 +548582,7 @@ amnioserosa - + @@ -548610,7 +548595,7 @@ - + Cyclorrhapha DOI:10.1073/pnas.0709145105 @@ -549090,7 +549075,7 @@ - + @@ -549106,14 +549091,14 @@ UBERON:0010312 immature eye - + - + definitional @@ -549413,21 +549398,21 @@ - + Permanent cartilage structure projecting from the site of origin of the recti muscles. Supports eyeball and aids rotation. uberon eye stalk UBERON:0010326 optic pedicel - + - + PMID:16496288 @@ -549507,20 +549492,20 @@ - + Mesenchyme that is part of a limb/fin bud. uberon UBERON:0010329 paired limb/fin bud mesenchyme - + - + EHDAA2-abduced @@ -549591,7 +549576,7 @@ - + An epithelium that is part of a handplate. EHDAA2:0000730 EMAPA:32630 @@ -549600,7 +549585,7 @@ UBERON:0010332 epithelium of handplate - + @@ -549613,7 +549598,7 @@ - + EHDAA2 @@ -549654,20 +549639,20 @@ - + Mesenchyme that is part of a extraembryonic membrane. uberon UBERON:0010333 extraembryonic membrane mesenchyme - + - + EHDAA2-abduced @@ -549686,7 +549671,7 @@ - + @@ -549696,32 +549681,32 @@ - - + + Mesenchyme that develops_from a neural crest and is part of a maxillary process mesenchyme. EHDAA2:0004601 uberon UBERON:0010334 maxillary process mesenchyme from neural crest - + - + - + EHDAA2 - + EHDAA2 @@ -549740,7 +549725,7 @@ - + @@ -549750,32 +549735,32 @@ - - + + Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a maxillary process mesenchyme. EHDAA2:0004602 uberon UBERON:0010335 maxillary process mesenchyme from head mesenchyme - + - + - + EHDAA2 - + EHDAA2 @@ -549794,7 +549779,7 @@ - + @@ -549804,32 +549789,32 @@ - - + + Mesenchyme that develops_from a neural crest and is part of a mandibular process mesenchyme. EHDAA2:0004603 uberon UBERON:0010336 mandibular process mesenchyme from neural crest - + - + - + EHDAA2 - + EHDAA2 @@ -549848,7 +549833,7 @@ - + @@ -549858,32 +549843,32 @@ - - + + Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a mandibular process mesenchyme. EHDAA2:0004604 uberon UBERON:0010337 mandibular process mesenchyme from head mesenchyme - + - + - + EHDAA2 - + EHDAA2 @@ -549902,7 +549887,7 @@ - + @@ -549912,21 +549897,21 @@ - + Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch maxillary mesenchyme. EHDAA2:0000043 uberon UBERON:0010338 1st arch maxillary mesenchyme from head mesenchyme - + - + EHDAA2 @@ -549945,7 +549930,7 @@ - + @@ -549955,21 +549940,21 @@ - + Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch mandibular mesenchyme. EHDAA2:0000036 uberon UBERON:0010339 1st arch mandibular mesenchyme from head mesenchyme - + - + EHDAA2 @@ -549988,7 +549973,7 @@ - + @@ -549996,10 +549981,9 @@ - - + Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch mesenchyme. EMAPA:16130 mesenchyme derived from head mesoderm of mesenchyme of 1st arch @@ -550007,14 +549991,14 @@ UBERON:0010341 1st arch mesenchyme from head mesenchyme - + - + EMAPA @@ -550039,7 +550023,7 @@ - + @@ -550048,9 +550032,8 @@ - - + Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 2nd arch mesenchyme. EHDAA2:0000067 EMAPA:16280 @@ -550062,14 +550045,14 @@ UBERON:0010343 2nd arch mesenchyme from head mesenchyme - + - + EHDAA2 @@ -550094,7 +550077,7 @@ - + @@ -550103,9 +550086,8 @@ - - + Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 3rd arch mesenchyme. EHDAA2:0000082 EMAPA:16403 @@ -550117,14 +550099,14 @@ UBERON:0010344 3rd arch mesenchyme from head mesenchyme - + - + EHDAA2 @@ -550149,7 +550131,7 @@ - + @@ -550158,9 +550140,8 @@ - - + Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 4th arch mesenchyme. EHDAA2:0000097 EMAPA:16771 @@ -550172,14 +550153,14 @@ UBERON:0010345 4th arch mesenchyme from head mesenchyme - + - + EHDAA2 @@ -550204,7 +550185,7 @@ - + @@ -550212,10 +550193,9 @@ - - + Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 6th arch mesenchyme. EHDAA2:0004078 head mesenchyme derived arch 6 mesenchyme @@ -550225,14 +550205,14 @@ UBERON:0010347 6th arch mesenchyme from head mesenchyme - + - + EHDAA2 @@ -550249,14 +550229,14 @@ - + EHDAA2:0000795 uberon hyoid muscle plate UBERON:0010348 hyoid pre-muscle mass - + @@ -550269,7 +550249,7 @@ - + EHDAA2 @@ -550327,7 +550307,7 @@ - + EMAPA:17351 future Reichert's cartilage hyoid cartilage pre-cartilage condensation @@ -550335,14 +550315,14 @@ UBERON:0010354 Reichert's cartilage pre-cartilage condensation - + - + DOI:10.1111/j.1469-7580.2005.00441.x EHDAA2 @@ -550522,7 +550502,7 @@ - + An arch-shaped structure of the vertebra that extends dorsally (neural arch) or ventrally (hemal arch) from the vertebral centrum. (...) certain common components [of vertebral structure] are found in nearly all vertebrate. A representative vertebra has a vertebral arch or neural arch, which extends dorsally around the spinal cord.[well established][VHOG] Note that humans do not have hemal arches, so VA=NA for FMA @@ -550536,14 +550516,14 @@ arch of centrum of vertebra - + - + FMA @@ -551177,7 +551157,7 @@ - + A unit of lung supplied by three to five terminal bronchioles and contained by fibrous septa. a pyramidal mass of lung tissue with sides that are bounded by the incomplete interlobular connective tissue septa and with a base, which is 1-2 cm in diameter, which usually faces the pleural surface of the lung; lobules that occupy a more central position in the lung are not well defined and are considered to consist of three to five pulmonary acini with proximate terminal bronchioles. @@ -551190,7 +551170,7 @@ secondary pulmonary lobule - + @@ -551203,7 +551183,7 @@ - + FMA @@ -551386,8 +551366,8 @@ - - + + In the head of the pancreas, the angle of junction of the lower and left lateral borders forms a prolongation, termed the uncinate process. During the embryonic development of the distal foregut, the duodenum c-shape is formed while rotating the ventral pancreatic bud into the dorsal bud. The dorsal and ventral pancreatic buds fuse. The dorsal pancreatic bud becomes the body, tail, and isthmus of the pancreas and the ventral pancreatic bud forms the pancreatic head and uncinate process[WP]. processus uncinatus @@ -551410,11 +551390,11 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.3/assets/3d-vh-f-pancreas.glb https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.3/assets/3d-vh-m-pancreas.glb - + - + @@ -551427,13 +551407,13 @@ - + FMA - + Wikipedia @@ -551504,7 +551484,7 @@ - + @@ -551519,14 +551499,14 @@ UBERON:0010375 pancreas dorsal primordium - + - + EHDAA2 @@ -551555,7 +551535,7 @@ - + @@ -551570,14 +551550,14 @@ UBERON:0010376 pancreas ventral primordium - + - + EHDAA2 @@ -551611,7 +551591,7 @@ - + @@ -551625,7 +551605,7 @@ UBERON:0010377 mesenchyme from somatopleure - + @@ -551638,7 +551618,7 @@ - + EHDAA2 @@ -551671,7 +551651,7 @@ - + @@ -551684,7 +551664,7 @@ UBERON:0010378 mesenchyme from splanchnopleure - + @@ -551697,7 +551677,7 @@ - + EHDAA2 @@ -551731,9 +551711,9 @@ - - - + + + The superior tarsal muscle is a smooth muscle adjoining the levator palpebrae superioris muscle that helps to raise the upper eyelid. declaring this to be both smooth muscle and part of the LPS leads to a disjointness violation (smooth muscle and striated muscle) @@ -551752,34 +551732,34 @@ superior tarsal muscle http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray894.png - + - + - + - + dbpedia - + FMA - + underside of levator palpebrae superioris dbpedia @@ -551896,7 +551876,7 @@ - + @@ -551916,14 +551896,14 @@ UBERON:0010384 lumen of laryngopharynx - + - + FMA @@ -552039,7 +552019,7 @@ - + @@ -552060,14 +552040,14 @@ The proximal rib derives from the caudal half of somite[PMID:15906248] proximal segment of rib - + - + MA @@ -552105,7 +552085,7 @@ - + @@ -552135,7 +552115,7 @@ Sources vary as to whether the pterygoid corresponds to the pterygoid processes in general, or the latter/inner plate. pterygoid bone - + @@ -552148,7 +552128,7 @@ - + MA @@ -552606,7 +552586,7 @@ - + @@ -552627,14 +552607,14 @@ spleen trabecular artery - + - + MP @@ -552752,7 +552732,7 @@ - + @@ -552772,14 +552752,14 @@ spleen central arteriole - + - + Wikipedia:Trabecular_arteries @@ -552916,8 +552896,8 @@ - - + + @@ -552933,11 +552913,11 @@ lateral ventricle subependymal layer - + - + @@ -552950,13 +552930,13 @@ - + MA - + Wikipedia @@ -553358,7 +553338,7 @@ - + @@ -553400,7 +553380,7 @@ barrel cortex - + @@ -553413,7 +553393,7 @@ - + MBA @@ -553502,7 +553482,7 @@ - + A part of the lymph node cortex in which B lymphocytes home to primary follicles to survey follicular dendritic cells (FDCs); antigen stimulated B cells proliferate and differentiate within the follicles forming distinctive germinal centers. MA:0002851 lymph node B cell dependent cortex @@ -553513,14 +553493,14 @@ lymph node B cell domain - + - + MP @@ -553565,7 +553545,7 @@ - + The paracortex and interfollicular cortex of the lymph node in which T lymphocytes home to survey dendritic cells. EMAPA:37663 MA:0002852 @@ -553583,14 +553563,14 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.3/assets/3d-nih-f-lymph-node.glb https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.3/assets/3d-nih-m-lymph-node.glb - + - + MP @@ -553754,7 +553734,7 @@ - + @@ -553780,14 +553760,14 @@ lymph node germinal center mantle zone - + - + MA @@ -553855,7 +553835,7 @@ - + @@ -553887,14 +553867,14 @@ spleen B cell corona - + - + CL:tm @@ -553975,7 +553955,7 @@ - + A lymphoid follicle containing naive B cells. The cortex of lymph nodes, the white pulp of spleen, and mucosa associated lymphoid tissue all have these primary follicles FMA:55223 @@ -553986,7 +553966,7 @@ UBERON:0010422 primary nodular lymphoid tissue - + @@ -553999,7 +553979,7 @@ - + CL:tm @@ -554072,7 +554052,7 @@ - + EMAPA:37492 MA:0001397 MA:0001418 @@ -554086,14 +554066,14 @@ The distal rib derives from both somite halves[PMID:15906248] distal segment of rib - + - + MA @@ -554410,7 +554390,7 @@ - + One of: zygomaticus major, zygomaticus minor. EMAPA:37703 MA:0002404 @@ -554425,7 +554405,7 @@ origin: posterior braincase zygomaticus muscle - + @@ -554438,7 +554418,7 @@ - + Wikipedia @@ -554496,10 +554476,10 @@ - - - - + + + + A narrow, elongated muscle of the rotator cuff. EMAPA:36156 @@ -554518,45 +554498,45 @@ teres minor muscle http://upload.wikimedia.org/wikipedia/commons/c/c4/Gray810.png - + - + - + - + - + Wikipedia - + dbpedia - + lateral border of the scapula dbpedia - + inferior facet of greater tubercle of the humerus dbpedia @@ -554866,7 +554846,7 @@ - + The intracranial dura mater, consisting of two layers: the outer periosteal layer which normally always adheres to the periosteum of the bones of the cranial vault; and the inner meningeal layer which in most places is fused with the outer. The two layers separate to accommodate meningeal vessels and large venous (dural) sinuses. The meningeal layer is also involved in the formation of the various dural folds, such as the falx cerebri and tentorium cerebelli and is comparable to and continuous with the dural mater of the spinal cord. The cranial epidural space is then a potential space between the bone and the combined periosteum/periosteal layer of the dura mater realised only pathologically and is neither continuous with or comparable to the vertebral epidural space. not clear whether this should be classified as part of cranial dura mater, as the division only makes sense in this area FMA:231545 @@ -554874,7 +554854,7 @@ UBERON:0010507 layer of dura mater - + @@ -554887,7 +554867,7 @@ - + FMA @@ -555331,12 +555311,12 @@ - + - + An electric organ that is part of a tail. BTO:0000376 electric organ of tail @@ -555344,14 +555324,14 @@ UBERON:0010519 tail electric organ - + - + BTO @@ -555440,7 +555420,7 @@ - + Skeletal element that forms as a replacement or substitution of another element or tissue. VSAO:0000135 XAO:0004016 @@ -555449,7 +555429,7 @@ UBERON:0010522 replacement element - + @@ -555462,7 +555442,7 @@ - + cjm @@ -555481,7 +555461,7 @@ - + A vessel of the microcirculature, lying between the arterioles and venules; includes capillaries (blood and lymphatic), metarterioles and arteriovenous anastomoses. MESH:D055806 TAO:0005251 @@ -555491,14 +555471,14 @@ UBERON:0010523 microcirculatory vessel - + - + ZFA @@ -555778,7 +555758,7 @@ - + @@ -555801,14 +555781,14 @@ UBERON:0010531 metanephros induced blastemal cells - + - + EHDAA2 @@ -555856,7 +555836,7 @@ - + @@ -555873,7 +555853,7 @@ UBERON:0010532 primitive nephron - + @@ -555886,7 +555866,7 @@ - + EHDAA2 @@ -555911,13 +555891,13 @@ - + - + @@ -555930,14 +555910,14 @@ UBERON:0010533 metanephros cortex - + - + VHOG @@ -556006,7 +555986,7 @@ - + A primitive nephron that is part of a metanephros. primitive nephron EHDAA2:0001516 @@ -556016,14 +555996,14 @@ UBERON:0010535 primitive metanephric nephron - + - + EHDAA2 @@ -556045,7 +556025,7 @@ - + @@ -556056,7 +556036,7 @@ UBERON:0010536 nephron progenitor - + @@ -556069,7 +556049,7 @@ - + cjm @@ -556225,8 +556205,8 @@ - - + + @@ -556239,24 +556219,24 @@ UBERON:0010541 tarsus cartilage element - + - + - + EHDAA2 - + EHDAA2 @@ -556284,7 +556264,7 @@ - + @@ -556326,14 +556306,14 @@ UBERON:0010543 acropodial skeleton - + - + PHENOSCAPE:ni @@ -556376,7 +556356,7 @@ - + @@ -556418,14 +556398,14 @@ metacarpus skeleton https://upload.wikimedia.org/wikipedia/commons/2/2f/Metacarpals_numbered-en.svg - + - + many to one @@ -556542,7 +556522,7 @@ - + @@ -556580,14 +556560,14 @@ metatarsus skeleton http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png - + - + many to one @@ -556684,7 +556664,7 @@ - + @@ -556718,14 +556698,14 @@ UBERON:0010546 metapodial skeleton - + - + PHENOSCAPE:ni @@ -559672,7 +559652,7 @@ - + @@ -559700,14 +559680,14 @@ UBERON:0010688 skeleton of manual acropodium - + - + PHENOSCAPE:ni @@ -559927,7 +559907,7 @@ - + @@ -559953,14 +559933,14 @@ UBERON:0010696 skeleton of pedal acropodium - + - + PHENOSCAPE:ni @@ -560180,20 +560160,20 @@ - + EMAPA:32720 uberon UBERON:0010700 phalanx pre-cartilage condensation - + - + EMAPA @@ -560885,7 +560865,7 @@ - + @@ -560903,14 +560883,14 @@ pectoral fin skeleton - + - + TAO @@ -560944,7 +560924,7 @@ - + @@ -560960,14 +560940,14 @@ UBERON:0010711 pelvic fin skeleton - + - + TAO @@ -561000,7 +560980,7 @@ - + @@ -561014,14 +560994,14 @@ UBERON:0010712 limb skeleton subdivision - + - + VSAO @@ -561116,7 +561096,7 @@ - + An iliac endochondral element that is composed primarily of cartilage tissue. EHDAA2:0000808 EMAPA:18347 @@ -561126,7 +561106,7 @@ UBERON:0010714 iliac cartilage element - + @@ -561139,7 +561119,7 @@ - + EHDAA2 @@ -561174,7 +561154,7 @@ - + A pubic endochondral element that is composed primarily of cartilage tissue. EHDAA2:0001573 EMAPA:26928 @@ -561183,7 +561163,7 @@ UBERON:0010718 pubic cartilage element - + @@ -561196,7 +561176,7 @@ - + EHDAA2 @@ -561727,8 +561707,8 @@ - - + + @@ -561741,11 +561721,11 @@ UBERON:0010728 sphenoid lesser wing pre-cartilage condensation - + - + @@ -561758,13 +561738,13 @@ - + EHDAA2 - + EHDAA2 @@ -561795,8 +561775,8 @@ - - + + @@ -561816,11 +561796,11 @@ UBERON:0010732 alisphenoid pre-cartilage condensation - + - + @@ -561833,13 +561813,13 @@ - + EHDAA2 - + EHDAA2 @@ -561878,8 +561858,8 @@ - - + + An alisphenoid endochondral element that is composed primarily of cartilage tissue. EHDAA2:0003450 sphenoid greater wing cartilage condensation @@ -561888,11 +561868,11 @@ UBERON:0010733 alisphenoid cartilage element - + - + @@ -561905,13 +561885,13 @@ - + EHDAA2 - + EHDAA2 @@ -562222,7 +562202,7 @@ - + @@ -562245,14 +562225,14 @@ bone of appendage girdle complex - + - + UBERONREF:0000003 @@ -562542,7 +562522,7 @@ - + A sacral vertebra endochondral element that is composed primarily of cartilage tissue. EHDAA2:0001773 EMAPA:18009 @@ -562552,14 +562532,14 @@ UBERON:0010745 sacral vertebra cartilage element - + - + EHDAA2 @@ -562725,7 +562705,7 @@ - + A lymphoid follicle that is part of a lymph node. EMAPA:35527 MA:0000742 @@ -562736,14 +562716,14 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.3/assets/3d-nih-f-lymph-node.glb https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.3/assets/3d-nih-m-lymph-node.glb - + - + issues/7 MP-def @@ -562760,8 +562740,8 @@ - - + + The middle pharyngeal constrictor is a fanshaped muscle, smaller than the Inferior pharyngeal constrictor muscle. The middle constrictor is a pharyngeal arches 4/6 muscle that participates in oral/pharyngeal behaviors and is innervated by the pharyngeal plexus of Vagus and attaches to the hyoid apparatus and the midline raphe.[FEED] FMA:46622 @@ -562786,11 +562766,11 @@ middle pharyngeal constrictor http://upload.wikimedia.org/wikipedia/commons/8/8f/Musculusconstrictorpharyngismedius.png - + - + @@ -562803,14 +562783,14 @@ - + pharyngeal plexus Wikipedia - + dbpedia @@ -562903,9 +562883,9 @@ - - - + + + @@ -562930,15 +562910,15 @@ prefrontal bone http://upload.wikimedia.org/wikipedia/commons/4/44/Dromaeosaurus_skull_en.svg - + - + - + @@ -562951,20 +562931,20 @@ - + orbital series ISBN:0073040584 - + ISBN:0073040584 - + Wikipedia @@ -563003,7 +562983,7 @@ - + @@ -563024,14 +563004,14 @@ UBERON:0010751 squamous part of temporal bone primordium - + - + EHDAA2 PMID:11523816 @@ -563736,8 +563716,8 @@ - - + + @@ -563751,24 +563731,24 @@ UBERON:0010846 radius pre-cartilage condensation - + - + - + EHDAA2 - + EHDAA2 @@ -563797,8 +563777,8 @@ - - + + @@ -563812,24 +563792,24 @@ UBERON:0010847 ulna pre-cartilage condensation - + - + - + EHDAA2 - + EHDAA2 @@ -563859,7 +563839,7 @@ - + @@ -563874,14 +563854,14 @@ UBERON:0010848 radius-ulna cartilage element - + - + EMAPA @@ -563921,7 +563901,7 @@ - + @@ -563934,14 +563914,14 @@ UBERON:0010849 tibia cartilage element - + - + EMAPA @@ -563970,7 +563950,7 @@ - + @@ -563983,14 +563963,14 @@ UBERON:0010850 tibia pre-cartilage condensation - + - + EHDAA2 @@ -564018,7 +563998,7 @@ - + @@ -564034,14 +564014,14 @@ UBERON:0010851 fibula cartilage element - + - + EMAPA @@ -564088,7 +564068,7 @@ - + @@ -564104,14 +564084,14 @@ UBERON:0010852 fibula pre-cartilage condensation - + - + EHDAA2 @@ -564128,7 +564108,7 @@ - + A smooth, rounded eminence on the lateral portion of the articular surface of the humerus. It articulates with the cupshaped depression on the head of the radius, and is limited to the front and lower part of the bone. TODO - check AAO. @@ -564148,14 +564128,14 @@ capitulum of humerus http://upload.wikimedia.org/wikipedia/commons/b/b9/Capitulumhumeri.PNG - + - + FMA @@ -565173,8 +565153,8 @@ - - + + A small pointed eminence of the external ear, situated in front of the concha, and projecting backward over the meatus. The tragus is generally believed to play a role in vertical sound localization in bats FMA:60998 @@ -565188,24 +565168,24 @@ tragus - + - + - + FMA - + Wikipedia-uncited @@ -565320,7 +565300,7 @@ - + Muscles of the pelvic girdle, hindlimb or pelvic fin. Muscles of the pelvic girdle, thigh, leg (crus), and foot (pes).[AAO] AAO:0000218 @@ -565338,14 +565318,14 @@ pelvic complex muscle - + - + prolog @@ -565413,7 +565393,7 @@ - + A muscle of a pectoral girdle, pectoral fin or anterior limb. the MA class belongs here, based on its current child classes Muscles of the pectoral girdle, arm, forearm, and hand (brachium, antebrachium, manus respectively).[AAO] @@ -565430,14 +565410,14 @@ UBERON:0010891 pectoral complex muscle - + - + prolog @@ -565489,9 +565469,9 @@ - - - + + + An endochondral element of the nasal capsule that forms septum between nasal capsules and usually remains unossified in mammals. @@ -565505,15 +565485,15 @@ UBERON:0010892 mesethmoid element - + - + - + @@ -565526,19 +565506,19 @@ - + ISBN:0073040584 - + TAO - + TAO @@ -565761,14 +565741,14 @@ - + - + Dermal element that arises via intramembranous ossification and are developmentally distinct from true ribs that articulate with the vertebral column. @@ -565783,11 +565763,11 @@ UBERON:0010898 gastralium - + - + @@ -565800,13 +565780,13 @@ - + ISBN:0073040584 - + Wikipedia @@ -566100,9 +566080,9 @@ - - - + + + @@ -566117,34 +566097,34 @@ lateral part derives from a fish dermal bone while the medial part comes from a spur off the manubrium endochondral bone[JB] clavicle bone primordium - + - + - + - + EHDAA2 - + EHDAA2 - + mah shown in mouse PMC1352163 @@ -566162,21 +566142,21 @@ - + Third bone of the lower leg, normally restricted to the area of the knee, in multuberculates, monotremes and some therians. uberon UBERON:0010907 parafibula - + - + Palaeos @@ -566230,7 +566210,7 @@ - + Posterior ossification of the otic capsule. teleost fishes have a bone which is called the opisthotic. However, it is not homologous to the tetrapod opisthotic and the teleost otic capsule is all of a piece AAO:0010835 @@ -566239,14 +566219,14 @@ see TAO:0000474 - intercalar "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." opisthotic - + - + AAO @@ -566299,8 +566279,8 @@ - - + + Anatomical cluster consisting of the skeletal elements (i.e. bone elements, cartilage elements, cartilage condensations) that are part of an individual subdivision of the organism. Excludes joints. Anatomical cluster consisting of the skeletal elements that are part of the skeleton.[VSAO] FMA:23879 @@ -566313,11 +566293,11 @@ subdivision of skeleton - + - + @@ -566330,13 +566310,13 @@ - + UBERONREF:0000003 - + VSAO @@ -566375,7 +566355,7 @@ - + Skeletal element that forms around the notochord and is part of the vertebral column. we include a distinct subclass for bony vertebra In contrast to lampreys and jawed vertebrates, hagfishes were thought to lack vertebrae. Now, long overlooked vertebral rudiments have been analysed in hagfish, suggesting that vertebrae existed in the last common ancestor of all vertebrates.[well established][VHOG] @@ -566392,7 +566372,7 @@ UBERON:0010913 vertebral element - + @@ -566406,7 +566386,7 @@ - + cjm @@ -566572,7 +566552,7 @@ - + Fibers of the thyroarytenoid muscle that continue to the margin of the epiglottis; it closes the inlet to the larynx. Thexton, see notes from WG2.[FEED] not a distinct muscle in FMA @@ -566595,7 +566575,7 @@ thyroepiglotticus muscle http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png - + @@ -566608,7 +566588,7 @@ - + FMA @@ -566686,14 +566666,14 @@ - + - + @@ -566723,24 +566703,24 @@ muscle belly cricopharyngeus muscle - + - + - + FMA - + Wikipedia @@ -566810,13 +566790,13 @@ - + EHDAA2:0001909 uberon UBERON:0010929 stapedius pre-muscle condensation - + @@ -566829,7 +566809,7 @@ - + EHDAA2 @@ -566928,9 +566908,9 @@ - - - + + + Cricoarytenoid muscles are muscles that connect the cricoid cartilage and arytenoid cartilage. More specifically, it can refer to: Posterior cricoarytenoid muscle Lateral cricoarytenoid muscle. candidate for obsoletion. See https://github.com/obophenotype/uberon/issues/530 EMAPA:37498 @@ -566951,15 +566931,15 @@ https://github.com/obophenotype/uberon/issues/530 http://upload.wikimedia.org/wikipedia/commons/9/96/Gray959.png - + - + - + @@ -566972,19 +566952,19 @@ - + dbpedia - + dbpedia - + dbpedia @@ -567087,9 +567067,9 @@ - - - + + + The orbicularis oris is a superficial facial muscle with fibers that encircle the opening of the oral cavity that attaches to the maxilla, mandible, skin and modiolus, and that participates in oral/pharyngeal behaviors, and is innervated by the facial nerve (CN VII). @@ -567111,36 +567091,36 @@ https://github.com/obophenotype/uberon/issues/473 https://upload.wikimedia.org/wikipedia/commons/b/b6/Orbicularis_oris.jpg - + - + - + - + Maxilla and mandible dbpedia - + Maxilla and mandible dbpedia - + Skin around the lips dbpedia @@ -567217,13 +567197,13 @@ - + EHDAA2:0002002 uberon UBERON:0010935 tensor tympani pre-muscle condensation - + @@ -567236,7 +567216,7 @@ - + EHDAA2 @@ -567249,8 +567229,8 @@ - - + + FMA:46658 SCTID:244805001 musculus thyropharyngeus @@ -567265,24 +567245,24 @@ muscle belly thyropharyngeus muscle - + - + - + FMA - + dbpedia @@ -567334,12 +567314,12 @@ - - - - - - + + + + + + The salpingopharyngeus muscle arises from the inferior part of the cartilage of the pharyngotympanic tube (Eustachian tube) in the nasal cavity; it passes downward and blends with the posterior fasciculus of the palatopharyngeus muscle. The salpingopharyngeus is known to raise the pharynx and larynx during deglutition (swallowing) and laterally draws the pharyngeal walls up. In addition, it opens the pharyngeal orifice of the pharyngotympanic tube during swallowing. This allows for the equalization of pressure between the auditory canal and the pharynx. The salpingopharyngeus is innervated by the vagus nerve (CN X) via the pharyngeal plexus. Salpingopharyngeus is a muscle that attaches to pharyngotympanic tube and the pharynx and is innervated by pharyngeal plexus of CN X and participates in oral/pharyngeal behaviors.[FEED] @@ -567356,27 +567336,27 @@ salpingopharyngeus muscle http://upload.wikimedia.org/wikipedia/commons/e/e3/Salpingopharyngeus.png - + - + - + - + - + - + @@ -567389,41 +567369,41 @@ - + FMA-abduced-lr - + vagus nerve and cranial accessory nerve dbpedia - + vagus nerve and cranial accessory nerve dbpedia - + lower part of the cartilage of the auditory tube dbpedia - + fibers pass downward and blend with the palatopharyngeus muscle to the upper border thyroid cartilage blending with constrictor fibers dbpedia - + fibers pass downward and blend with the palatopharyngeus muscle to the upper border thyroid cartilage blending with constrictor fibers dbpedia @@ -567467,7 +567447,7 @@ - + belly venter FMA:9719 @@ -567477,14 +567457,14 @@ UBERON:0010938 muscle belly - + - + FMA @@ -567687,7 +567667,7 @@ - + @@ -567732,14 +567712,14 @@ anterior digastric muscle https://github.com/obophenotype/uberon/issues/538 - + - + mandibular division (V3) of the trigeminal (CN V) via the mylohyoid nerve Wikipedia @@ -567810,7 +567790,7 @@ - + @@ -567840,14 +567820,14 @@ posterior digastric muscle - + - + digastric branch FEED Wikipedia @@ -567936,8 +567916,8 @@ - - + + The occipitofrontalis or epicranius is a muscle which covers parts of the skull. It consists of two parts or bellies: The occipital belly, near the occipital bone, and the frontal belly, near the frontal bone. A zone of muscle in FMA @@ -567956,24 +567936,24 @@ occipitofrontalis muscle http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png - + - + - + dbpedia - + dbpedia @@ -568020,7 +568000,7 @@ - + A belly of the occipitofrontalis muscle that is near the occipital bone. FMA:46758 SCTID:21405000 @@ -568034,14 +568014,14 @@ UBERON:0010947 occipitalis - + - + FMA @@ -568266,7 +568246,7 @@ - + A belly of the occipitofrontalis muscle that is near the frontal bone. FMA:46757 SCTID:368680005 @@ -568286,14 +568266,14 @@ frontalis muscle belly https://upload.wikimedia.org/wikipedia/commons/b/be/Musculus_frontalis.png - + - + FMA @@ -568366,9 +568346,9 @@ - - - + + + The nasalis (compressor naris) is a sphincter-like muscle of the nose whose function is to compress the nasal cartilage. It consists of two parts, transverse and alar: The transverse part arises from the maxilla, above and lateral to the incisive fossa; its fibers proceed upward and medially, expanding into a thin aponeurosis which is continuous on the bridge of the nose with that of the muscle of the opposite side, and with the aponeurosis of the Procerus. The alar part is attached at one end to the greater alar cartilage, and at the other to the integument at the point of the nose. Other sources divide it into 'Compressor nasalis' and 'Dilator nasalis'. FMA:46770 @@ -568385,15 +568365,15 @@ nasalis muscle http://upload.wikimedia.org/wikipedia/commons/b/bb/Nasalis.png - + - + - + @@ -568406,19 +568386,19 @@ - + FMA-abduced-lr - + dbpedia - + dbpedia @@ -568508,18 +568488,18 @@ - - + + EHDAA2:0002079 uberon UBERON:0010955 trapezius pre-muscle mass - + - + @@ -568532,13 +568512,13 @@ - + EHDAA2 - + EHDAA2 @@ -568548,7 +568528,7 @@ - + FMA:46638 pars pterygopharyngea (musculus constrictor pharyngis superior) pars pterygopharyngea musculus constrictoris pharyngis superioris @@ -568558,14 +568538,14 @@ UBERON:0010956 pterygopharyngeal part of superior pharyngeal constrictor - + - + FMA @@ -568595,9 +568575,9 @@ - - - + + + A single muscle, filling up the posterior concave surfaces of the arytenoid cartilages. It arises from the posterior surface and lateral border of one arytenoid cartilage, and is inserted into the corresponding parts of the opposite cartilage. It consists of oblique and transverse parts. TODO - check child relationships NCIT:C32149 @@ -568611,36 +568591,36 @@ arytenoid muscle http://upload.wikimedia.org/wikipedia/commons/5/52/Musculusarytenoideus.png - + - + - + - + recurrent laryngeal branch of the vagus dbpedia - + Arytenoid cartilage on one side dbpedia - + Arytenoid cartilage on opposite side dbpedia @@ -568693,7 +568673,7 @@ - + Any muscle organ that is part of either the head or the neck. NCIT:C32716 UMLS:C0448281 @@ -568703,14 +568683,14 @@ UBERON:0010959 craniocervical muscle - + - + prolog @@ -568732,18 +568712,18 @@ - - + + EHDAA2:0000455 uberon UBERON:0010961 erector spinae pre-muscle mass - + - + @@ -568756,13 +568736,13 @@ - + EHDAA2 - + EHDAA2 @@ -568772,13 +568752,13 @@ - + EHDAA2:0000459 uberon UBERON:0010962 extensor pre-muscle mass - + @@ -568791,7 +568771,7 @@ - + EHDAA2 @@ -568802,21 +568782,21 @@ - + EHDAA2:0003425 uberon UBERON:0010963 isa row in EHDAA2 trunk and cervical myotome group - + - + EHDAA2 @@ -568826,23 +568806,23 @@ - - - + + + EHDAA2:0000843 uberon UBERON:0010970 intercostal pre-muscle mass - + - + - + @@ -568855,19 +568835,19 @@ - + EHDAA2 - + cjm - + EHDAA2 @@ -568895,18 +568875,18 @@ - - + + EHDAA2:0000470 uberon UBERON:0010975 external oblique pre-muscle mass - + - + @@ -568919,13 +568899,13 @@ - + EHDAA2 - + EHDAA2 @@ -568935,13 +568915,13 @@ - + EHDAA2:0000543 uberon UBERON:0010977 flexor pre-muscle mass - + @@ -568954,7 +568934,7 @@ - + EHDAA2 @@ -568983,18 +568963,18 @@ - - + + EHDAA2:0000933 uberon UBERON:0010982 latissimus dorsi pre-muscle mass - + - + @@ -569007,13 +568987,13 @@ - + EHDAA2 - + EHDAA2 @@ -569024,18 +569004,18 @@ - - + + EHDAA2:0000993 uberon UBERON:0010983 levator scapulae pre-muscle mass - + - + @@ -569048,13 +569028,13 @@ - + EHDAA2 - + EHDAA2 @@ -569065,18 +569045,18 @@ - - + + EHDAA2:0001423 uberon UBERON:0010984 pectoral pre-muscle mass - + - + @@ -569089,13 +569069,13 @@ - + EHDAA2 - + EHDAA2 @@ -569106,18 +569086,18 @@ - - + + EHDAA2:0001636 uberon UBERON:0010985 rhomboid pre-muscle mass - + - + @@ -569130,13 +569110,13 @@ - + EHDAA2 - + EHDAA2 @@ -569146,8 +569126,8 @@ - - + + EHDAA2:0001833 EHDAA:5992 serratus anterior pre-muscle mass @@ -569155,11 +569135,11 @@ UBERON:0010986 serratus ventralis pre-muscle mass - + - + @@ -569172,13 +569152,13 @@ - + EHDAA2 - + EHDAA2 @@ -569195,18 +569175,18 @@ - - + + EHDAA2:0001913 uberon UBERON:0010987 sterno-mastoid pre-muscle mass - + - + @@ -569219,13 +569199,13 @@ - + EHDAA2 - + EHDAA2 @@ -569236,18 +569216,18 @@ - - + + EHDAA2:0002005 uberon UBERON:0010988 teres major pre-muscle mass - + - + @@ -569260,13 +569240,13 @@ - + EHDAA2 - + EHDAA2 @@ -569287,7 +569267,7 @@ - + @@ -569300,14 +569280,14 @@ UBERON:0010989 transverospinalis pre-muscle mass - + - + EHDAA2 @@ -569323,7 +569303,7 @@ - + The transversospinal muscles are a group of muscles of the human back. Their combined action is rotation and extension of the vertebral column. They include: semispinalis, spanning 4-6 vertebral segments semispinalis dorsi semispinalis cervicis semispinalis capitis multifidus, spanning 2-4 vertebral segments rotatores, spanning 1-2 vertebral segments rotatores cervicis rotatores thoracis rotatores lumborum. EHDAA2:0002075 @@ -569343,7 +569323,7 @@ transversospinales muscle http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray384.png - + @@ -569356,7 +569336,7 @@ - + EHDAA2 @@ -569410,20 +569390,20 @@ - + EMAPA:17750 uberon UBERON:0010993 subscapularis pre-muscle mass - + - + EHDAA2 @@ -569434,7 +569414,7 @@ - + A triangular eminence projecting forward from the proximal epiphysis of the ulna[WP,modified]. coronoid process @@ -569451,14 +569431,14 @@ coronoid process of ulna http://upload.wikimedia.org/wikipedia/commons/6/60/Gray212.png - + - + FMA @@ -569560,7 +569540,7 @@ - + A thin layer of cartilage, usually hyaline, on the articular surface of bones in synovial joints. @@ -569590,7 +569570,7 @@ articular cartilage of joint - + @@ -569603,7 +569583,7 @@ - + Wikipedia @@ -569686,12 +569666,12 @@ - + - + @@ -569710,7 +569690,7 @@ pharyngeal arch cartilage - + @@ -569723,7 +569703,7 @@ - + ZFA @@ -569916,9 +569896,9 @@ - - - + + + Brachioradialis is a muscle of the forearm that acts to flex the forearm at the elbow. It is also capable of both pronation and supination, depending on the position of the forearm. It is attached to the distal styloid process of the radius by way of the brachioradialis tendon, and to the lateral supracondylar ridge of the humerus. FMA:38485 @@ -569932,35 +569912,35 @@ brachioradialis http://upload.wikimedia.org/wikipedia/commons/9/92/Brachioradialis.png - + - + - + - + dbpedia - + Lateral supracondylar ridge of the humerus dbpedia - + Distal radius dbpedia @@ -569990,9 +569970,9 @@ - - - + + + The flexor pollicis brevis is a muscle in the hand that flexes the thumb. It is one of three thenar muscles. It has both a superficial part and a deep part. FMA:37378 @@ -570006,34 +569986,34 @@ flexor pollicis brevis muscle http://upload.wikimedia.org/wikipedia/commons/c/ca/Musculusflexorpollicisbrevis.png - + - + - + - + dbpedia - + dbpedia - + Extensor pollicis longus and brevis dbpedia @@ -570063,12 +570043,12 @@ - - - - - - + + + + + + The spinalis is the portion of the erector spinae, a bundle of muscles and tendons, located nearest to the spine. It is divided into three parts. [WP,unvetted]. BTO:0002621 FMA:77179 @@ -570084,27 +570064,27 @@ spinalis muscle http://upload.wikimedia.org/wikipedia/commons/a/a4/Spinalis.png - + - + - + - + - + - + @@ -570117,40 +570097,40 @@ - + BTO - + dbpedia - + spinous process Thoracis: Upper lumbar and lower thoracic vertebrae. Cervicis: Ligamentum nuchae and spinous process of C7. dbpedia - + spinous process Thoracis: Upper lumbar and lower thoracic vertebrae. Cervicis: Ligamentum nuchae and spinous process of C7. dbpedia - + spinous process Thoracis: SP of upper thoracic vertebrae. Cervicis: SP of cervical vertebrae except C1. dbpedia - + spinous process Thoracis: SP of upper thoracic vertebrae. Cervicis: SP of cervical vertebrae except C1. dbpedia @@ -570269,7 +570249,7 @@ - + The pyramidalis is a small and triangular muscle, anterior to the Rectus abdominis, and contained in the rectus sheath. FMA:15568 @@ -570286,7 +570266,7 @@ pyramidalis http://upload.wikimedia.org/wikipedia/commons/9/91/Gray397.png - + @@ -570299,7 +570279,7 @@ - + pubic symphysis and pubic crest dbpedia @@ -570376,9 +570356,9 @@ - - - + + + A muscle that originates from the cuboid bone and divides into two portions, which are inserted into the medial and lateral sides of the base of the first phalanx of the great toe, a sesamoid bone being present in each tendon at its insertion. EMAPA:36259 @@ -570396,15 +570376,15 @@ flexor hallucis brevis muscle http://upload.wikimedia.org/wikipedia/commons/5/58/Musculus_flexor_hallucis_brevis.png - + - + - + @@ -570417,21 +570397,21 @@ - + plantar surface of cuneiform bones dbpedia - + medial and lateral sesamoid bones of first metatarsal dbpedia - + medial and lateral sesamoid bones of first metatarsal dbpedia @@ -570527,7 +570507,7 @@ - + @@ -570561,7 +570541,7 @@ aryepiglotticus muscle http://upload.wikimedia.org/wikipedia/commons/5/52/Musculusarytenoideus.png - + @@ -570574,7 +570554,7 @@ - + FMA @@ -570690,8 +570670,8 @@ - - + + The obturator internus muscle originates on the medial surface of the obturator membrane, the ischium near the membrane, and the rim of the pubis. It exits the pelvic cavity through the lesser sciatic foramen. The obturator internus is situated partly within the lesser pelvis, and partly at the back of the hip-joint. It functions to help laterally rotate extended thigh and abduct flexed thigh, as well as to steady the femoral head in the acetabulum. Originates on the entire lateral surface of the pelvic rim. Dorsal fibers insert distally to the dorso-medial surface of the caput femoris and ventral fibers extend around the acetabulum to insert on the tendon of the caput femoris.[AAO] Definition generalized to accommodate AAO class - 'Originates on the entire lateral surface of the pelvic rim. Dorsal fibers insert distally to the dorso-medial surface of the caput femoris and ventral fibers extend around the acetabulum to insert on the tendon of the caput femoris.' [AAO:0010052] @@ -570713,11 +570693,11 @@ obturator internus http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG - + - + @@ -570730,13 +570710,13 @@ - + FMA - + medial aspect of the Greater trochanter dbpedia @@ -570906,7 +570886,7 @@ - + The eighth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. EMAPA:19549 @@ -570923,7 +570903,7 @@ thoracic vertebra 8 - + @@ -570936,7 +570916,7 @@ - + FMA @@ -570978,7 +570958,7 @@ - + @@ -571003,14 +570983,14 @@ UBERON:0011060 perilymphatic channel - + - + MA @@ -571058,7 +571038,7 @@ - + @@ -571073,14 +571053,14 @@ UBERON:0011078 endolymphatic space - + - + Wikipedia @@ -571098,8 +571078,8 @@ - - + + Dermal bone that is located posterior to the dentary and lateral to the articular and retroarticular bones of the lower jaw. The angular forms the outer dermal sheet of the posterior part of the lower jaw. The angular bears a portion of the mandibular sensory canal. The angular is a paired bone. The angular fuses with the articular bone in clupeocephalans forming the anguloarticular. angular @@ -571114,11 +571094,11 @@ UBERON:0011079 angular bone - + - + @@ -571131,14 +571111,14 @@ - + mandibular series ISBN:0073040584 - + AAO @@ -571187,7 +571167,7 @@ - + @@ -571212,7 +571192,7 @@ palatoquadrate arch - + @@ -571225,7 +571205,7 @@ - + VHOG @@ -571693,7 +571673,7 @@ - + The lacrimal nerve is the smallest of the three branches of the ophthalmic division of the trigeminal nerve. FMA:52628 @@ -571706,14 +571686,14 @@ lacrimal nerve - + - + FMA @@ -571781,7 +571761,7 @@ - + A cruciate ligament in the neck forming part of the atlanto-axial joint. It consists of the transverse ligament of the atlas, along with additional fibers above and below. EMAPA:19010 FMA:25018 @@ -571796,14 +571776,14 @@ UBERON:0011106 cruciate ligament of atlas - + - + Wikipedia FMA @@ -571985,7 +571965,7 @@ - + @@ -572010,14 +571990,14 @@ humeroulnar joint http://upload.wikimedia.org/wikipedia/commons/9/97/Gray329.png - + - + FMA @@ -572061,7 +572041,7 @@ - + @@ -572086,14 +572066,14 @@ humeroradial joint http://upload.wikimedia.org/wikipedia/commons/9/97/Gray329.png - + - + FMA @@ -572863,21 +572843,21 @@ - + EMAPA:18714 temporo-mandibular joint primordium uberon UBERON:0011130 temporomandibular joint primordium - + - + EMAPA @@ -572911,7 +572891,7 @@ - + A skeletal joint that connects two adjacent metacarpals[FMA,modified]. FMA:35288 SCTID:303065007 @@ -572922,14 +572902,14 @@ UBERON:0011131 intermetacarpal joint - + - + two adjacent metacarpals @@ -572969,8 +572949,8 @@ - - + + A skeletal joint that connects two carpal bones. FMA:35292 MESH:D050824 @@ -572987,24 +572967,24 @@ intercarpal joint http://upload.wikimedia.org/wikipedia/commons/3/37/Gray336.png - + - + - + FMA - + two adjacent carpals @@ -573075,7 +573055,7 @@ - + A joint that connects two adjacent metatarsals. In humans: The base of the first metatarsal is not connected with that of the second by any ligaments; in this respect the great toe resembles the thumb FMA:35219 @@ -573086,14 +573066,14 @@ intermetatarsal joint http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray358.png - + - + two adjacent metatarsals @@ -573159,8 +573139,8 @@ - - + + A cartilage element that lies between two successive vertebral centra. Block of cartilage, which usually ossifies, that lies between successive vertebral centra.[AAO] AAO:0000795 @@ -573168,25 +573148,25 @@ UBERON:0011135 intervertebral cartilage - + - + - + FMA MA - + between two centra @@ -573295,7 +573275,7 @@ - + Subdivision of the skeletal system which consists of the postcranial axial skeleton plus associated joints. axial skeletal system FMA:302077 @@ -573305,7 +573285,7 @@ postcranial axial skeletal system http://purl.obolibrary.org/obo/uberon/docs/The-axial-skeleton - + @@ -573318,7 +573298,7 @@ - + cjm @@ -573566,7 +573546,7 @@ - + @@ -573579,7 +573559,7 @@ - + Subdivision of urinary system which consists of the kidney and the ureters. FMA:45658 @@ -573592,24 +573572,24 @@ upper urinary tract - + - + - + FMA - + FMA-abduced-lr @@ -573637,7 +573617,7 @@ - + @@ -573657,14 +573637,14 @@ adductor muscle of hip http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG - + - + a small part of adductor magnus is innervated by the tibial nerve dbpedia @@ -573828,7 +573808,7 @@ - + Gland of the lamina epithelialis mucosae which perforate the lamina muscularis, with their adenomeres located in the submucosal connective tissue. BTO:0003751 EMAPA:37970 @@ -573837,14 +573817,14 @@ UBERON:0011148 submucosal gland - + - + perforates @@ -573867,7 +573847,7 @@ - + @@ -573882,14 +573862,14 @@ UBERON:0011149 Marshall's gland - + - + BTO @@ -574151,7 +574131,7 @@ - + AAO:0010371 TAO:0001401 XAO:0003178 @@ -574163,14 +574143,14 @@ UBERON:0011152 dorsal hyoid arch skeleton - + - + AAO @@ -574192,7 +574172,7 @@ - + AAO:0010372 EFO:0003684 TAO:0001402 @@ -574206,14 +574186,14 @@ ventral hyoid arch skeleton - + - + AAO @@ -574309,7 +574289,7 @@ - + Subdivision of skull that consists of the facial bones. EHDAA2:0002206 EHDAA:8361 @@ -574328,7 +574308,7 @@ facial skeleton http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg - + @@ -574341,7 +574321,7 @@ - + FMA @@ -574710,7 +574690,7 @@ - + @@ -574725,14 +574705,14 @@ UBERON:0011163 supraoccipital pre-cartilage condensation - + - + EHDAA2-inferred @@ -574922,7 +574902,7 @@ - + Paired, intramembranous bones located within the nasal capsules and embedded in the nasal cartilages; it is pierced by the ductus nasolacrimalis. AAO:0000556 septomaxilla @@ -574941,14 +574921,14 @@ A small dermal bone of the facial series that is often absent; when present it is usually sunken beneath the surface bones and aids in forming the nasal cavity septomaxilla bone - + - + AAO @@ -575032,8 +575012,8 @@ - - + + A bone behind and above the orbit of which it commonly forms part of the border that is present in many vertebrates and corresponds to the postorbital process of the frontal bone of various birds and mammals. postfrontal @@ -575041,11 +575021,11 @@ UBERON:0011168 postfrontal bone - + - + @@ -575058,14 +575038,14 @@ - + orbital series ISBN:0073040584 - + ISBN:0073040584 @@ -575088,8 +575068,8 @@ - - + + The postorbital is one of the bones in vertebrate skulls which forms a portion of the dermal skull roof and, sometimes, a ring about the orbit. Generally, it is located behind the postfrontal and posteriorly to the orbital fenestra. In some vertebrates, the postorbital is fused with the postfrontal to create a postorbitofrontal. postorbital Wikipedia:Postorbital_bone @@ -575097,11 +575077,11 @@ UBERON:0011169 postorbital bone - + - + @@ -575114,14 +575094,14 @@ - + orbital series ISBN:0073040584 - + ISBN:0073040584 @@ -575278,7 +575258,7 @@ - + The term retrorubral area of the midbrain reticular nucleus refers to a region of the rat brain caudal and dorsal to the ventral tegmental area. It is one of three parts of the midbrain reticular nucleus; the other two are the magnocellular part of the midbrain reticular nucleus and the parvicellular part of the midbrain reticular nucleus (Swanson-2004). BrainInfo distinguishes between the Retrorubral area of the midbrain reticular formation and the retrorubral nucleus. A8 retrorubal field @@ -575300,14 +575280,14 @@ UBERON:0011172 retrorubral area of midbrain reticular nucleus - + - + Obol @@ -575390,7 +575370,7 @@ - + One of two divisions of the nuclei of stria terminalis based on topology, connectivity and multiple stains in the rat ( Swanson-2004 ) and the mouse ( Dong-2004 ). The other division consists of the posterior nuclei of stria terminalis. The anterior division includes the anterolateral area of stria terminalis, anteromedial area of stria terminalis, oval nucleus of stria terminalis, juxtacapsular nucleus of stria terminalis, rhomboid nucleus of stria terminalis, dorsomedial nucleus of stria terminalis, fusiform nucleus of stria terminalis, ventral nucleus of stria terminalis, and the magnocellular nucleus of stria terminalis. anterior division @@ -575411,14 +575391,14 @@ UBERON:0011173 anterior division of bed nuclei of stria terminalis - + - + MA @@ -575500,7 +575480,7 @@ - + A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of nine components of the anterior nuclei of stria terminalis in the Functional CNS Model -Rat ( Swanson-2004 ). fusiform nucleus BAMS:BSTfu @@ -575518,14 +575498,14 @@ UBERON:0011175 fusiform nucleus of stria terminalis - + - + MA @@ -575589,7 +575569,7 @@ - + A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of nine components of the anterior nuclei of stria terminalis in the Functional CNS Model - Rat (Swanson-2004). EMAPA:37667 MA:0000929 @@ -575602,14 +575582,14 @@ UBERON:0011176 oval nucleus of stria terminalis - + - + MA @@ -575643,7 +575623,7 @@ - + One of two divisions of the nuclei of stria terminalis based on topology, connectivity and multiple stains in the rat ( Swanson-2004 ) and the mouse ( Dong-2004 ). The other division consists of the anterior nuclei of stria terminalis. The posterior division includes the principal nucleus of stria terminalis, interfascicular nucleus of stria terminalis, transverse nucleus of stria terminalis, premedullary nucleus of stria terminalis, dorsal nucleus of stria terminalis, the strial extension of stria terminalis, and the cell sparse zone of stria terminalis. posterior division BAMS:BSTp @@ -575661,14 +575641,14 @@ UBERON:0011177 posterior division of bed nuclei of stria terminalis - + - + MA @@ -575732,7 +575712,7 @@ - + A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of seven components of the posterior nuclei of stria terminalis in the Functional CNS Model - Rat ( Swanson-2004 ). principal nucleus BAMS:BSTpr @@ -575748,14 +575728,14 @@ UBERON:0011178 principal nucleus of stria terminalis - + - + MA @@ -575807,7 +575787,7 @@ - + A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of seven components of the posterior nuclei of stria terminalis in the Functional CNS Model - Rat (Swanson-2004). transverse nucleus BAMS:BSTtr @@ -575823,14 +575803,14 @@ UBERON:0011179 transverse nucleus of stria terminalis - + - + MA @@ -576062,7 +576042,7 @@ - + Small, mucous accessory lacrimal glands that are found underneath the eyelid where the upper and lower conjuctivae meet. Their ducts unite into a rather long sinus which open into the fornix conjunctiva. There are approximately forty Krause glands in the region of the upper eyelid, and around 6 to 8 in the region of the lower lid. The function of these glands are to produce tears which are secreted onto the surface of the conjuctiva. accessory lacrimal gland conjunctival gland @@ -576077,14 +576057,14 @@ UBERON:0011186 Krause's gland - + - + ncithesaurus @@ -576126,7 +576106,7 @@ - + The greater tubercle of the humerus is situated lateral to the head of the humerus and posteriolateral to the lesser tubercle. Its upper surface is rounded and marked by three flat impressions. the highest of these gives ('superior facet') insertion to the Supraspinatus the middle ('middle facet') to the Infraspinatus. the lowest one ('inferior facet'), and the body of the bone for about 2.5 cm. below it, to the Teres minor. The lateral surface of the greater tubercle is convex, rough, and continuous with the lateral surface of the body. Between the greater tubercle and the lesser tubercle is the intertubercular sulcus (bicipital groove). FMA:23390 NCIT:C32700 @@ -576145,7 +576125,7 @@ ventral tubercle of humerus http://upload.wikimedia.org/wikipedia/commons/3/3b/Gray326.png - + @@ -576158,7 +576138,7 @@ - + FMA @@ -576225,7 +576205,7 @@ - + The lesser tubercle of the humerus, although smaller, is more prominent than the greater tubercle: it is situated in front, and is directed medially and anteriorly. Above and in front it presents an impression for the insertion of the tendon of the Subscapularis. FMA:23393 @@ -576244,7 +576224,7 @@ lesser tubercle of humerus http://upload.wikimedia.org/wikipedia/commons/3/31/Tuberculumminushumeri.png - + @@ -576257,7 +576237,7 @@ - + FMA @@ -576321,7 +576301,7 @@ - + A lamina propria that is part of a large intestine. FMA:15654 @@ -576335,14 +576315,14 @@ lamina propria of large intestine - + - + FMA @@ -576640,7 +576620,7 @@ - + An epithelium that is part of a inferior parathyroid gland. EHDAA2:0000824 EHDAA:3868 @@ -576649,14 +576629,14 @@ UBERON:0011195 inferior parathyroid epithelium - + - + EHDAA2 @@ -576695,7 +576675,7 @@ - + An epithelium that is part of a superior parathyroid gland. EHDAA2:0001957 EHDAA:3874 @@ -576703,14 +576683,14 @@ UBERON:0011196 superior parathyroid epithelium - + - + EHDAA2 @@ -576801,7 +576781,7 @@ - + A muscle layer that is part of a large intestine. FMA:14971 NCIT:C32927 @@ -576814,14 +576794,14 @@ UBERON:0011198 muscle layer of large intestine - + - + FMA @@ -576869,7 +576849,7 @@ - + A small indentation located in the prostatic urethra, at the apex of the urethral crest, on the seminal colliculus (verumontanum), laterally flanked by openings of the ejaculatory ducts. add df relations. Check mesopnephric duct FMA:19702 @@ -576892,14 +576872,14 @@ http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray1153.png https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb - + - + FMA @@ -577067,7 +577047,7 @@ - + A muscle layer that is part of a small intestine. FMA:14932 NCIT:C33569 @@ -577083,14 +577063,14 @@ UBERON:0011201 muscle layer of small intestine - + - + FMA @@ -577510,19 +577490,19 @@ - - + + migration pathway mesenchyme uberon NC migration pathway UBERON:0011210 migration pathway NC-derived mesenchyme - + - + @@ -577535,13 +577515,13 @@ - + EHDAA2-abduced - + EHDAA2-abduced ZFA-abduced @@ -577791,8 +577771,8 @@ - - + + EMAPA:36269 FMA:13400 SCTID:244934006 @@ -577803,11 +577783,11 @@ UBERON:0011217 serratus dorsalis muscle - + - + @@ -577820,13 +577800,13 @@ - + dbpedia-abduced - + dbpedia-abduced @@ -577848,7 +577828,7 @@ - + Origin: spinous processes of seventh cervical and sometimes two upper thoracic vertebrae; insertion: spinous processes of axis and sometimes of second to fourth cervical vertebrae; innervation: branches of cervical; action: extends vertebral column. BTO:0002623 @@ -577862,7 +577842,7 @@ The Spinalis cervicis (Spinalis colli) is an inconstant muscle, which arises from the lower part of the ligamentum nuchæ, the spinous process of the seventh cervical, and sometimes from the spinous processes of the first and second thoracic vertebrae, and is inserted into the spinosus process of the axis, and occasionally into the spinous processes of the two vertebrae below it. [Wikipedia:Spinalis#Spinalis_cervivis] spinalis cervicis muscle - + @@ -577875,7 +577855,7 @@ - + also spinous process of C7 dbpedia @@ -577953,7 +577933,7 @@ - + The mastoid process is a conical prominence projecting from the undersurface of the mastoid portion of the temporal bone. It is located just behind the external acoustic meatus, and lateral to the styloid process. Its size and form vary somewhat; it is larger in the male than in the female. This process serves for the attachment of the posterior belly of the digastric, sternocleidomastoid, splenius capitis, and longissimus capitis muscles. The word is derived from the Greek 'masto-', alluding to its resemblance to the breast. FMA:52872 NCIT:C12503 @@ -577969,7 +577949,7 @@ mastoid process of temporal bone - + @@ -577982,7 +577962,7 @@ - + ncithesaurus @@ -578092,7 +578072,7 @@ - + Muscles within the eye (bulbus oculi).[AAO] AAO:0010038 EMAPA:18808 @@ -578103,14 +578083,14 @@ UBERON:0011222 intra-ocular muscle - + - + EMAPA @@ -578334,8 +578314,8 @@ - - + + An ossified mesethmoid element. Endochondral bone that extends forward from the frontal bones and articulates posterolaterally with the lateral ethmoids and the vomer and parasphenoid ventrally. The mesethmoid is an unpaired bone[TAO:0000323]. TAO:0000323 @@ -578345,24 +578325,24 @@ UBERON:0011238 mesethmoid bone - + - + - + ZFA - + ZFA @@ -578423,10 +578403,10 @@ - - - - + + + + Region between capsules formed by anterior tips of neurocranial trabeculae. Anterior wall of the braincase.[AAO] Chondrocranium cartilage that is initially plate-like and formed from the anterior fusion of the trabecula crani. The ethmoid cartilage is paired.[TAO] @@ -578442,19 +578422,19 @@ ethmoid cartilage - + - + - + - + @@ -578467,25 +578447,25 @@ - + FMA - + AAO - + TAO - + ISBN:0073040584 @@ -578539,7 +578519,7 @@ - + The perpendicular plate of the ethmoid bone (vertical plate) is a thin, flattened lamina, polygonal in form, which descends from the under surface of the cribriform plate, and assists in forming the septum of the nose; it is generally deflected a little to one or other side. The anterior border articulates with the spine of the frontal bone and the crest of the nasal bones. The posterior border articulates by its upper half with the sphenoidal crest, by its lower with the vomer. The inferior border is thicker than the posterior, and serves for the attachment of the septal cartilage of the nose. The surfaces of the plate are smooth, except above, where numerous grooves and canals are seen; these lead from the medial foramina on the cribriform plate and lodge filaments of the olfactory nerves. perpendicular plate EMAPA:25114 @@ -578556,7 +578536,7 @@ UBERON:0011244 perpendicular plate of ethmoid - + @@ -578569,7 +578549,7 @@ - + FMA @@ -578973,14 +578953,14 @@ - + - + A skeletal muscle in the posterior triangle of the neck. It originates on the transverse processes of the upper cervical vertebrae and is inserted in the lateral half of the clavicle. Cleidocervicalis is one of two muscles, which make up the cleidocephalic component of the complex brachiocephalic muscle. It is a thin triangular muscle which has a broad origin on the median raphe of the mid dorsal aspect of the neck. The muscle is bounded caudally by the trapezius and cranially by the occipital component of the sternocephalicus . The cleidocervicalis tapers as it passes ventrally across the side of the neck to insert into the clavicular tendon. It is innervated by the accessory nerve. The brachiocephalic complex advances the limb, extends the shoulder joint and fixes the neck. The levator claviculae is an infrequently recognized anatomical variant in humans, distinguished from, for example, cervical adenopathy or a thrombosed vein, but a normal muscle in lower mammals and anthropoids. In humans, when present, it often appears unilaterally, most commonly on the left side, or bilaterally. @@ -578996,25 +578976,25 @@ UBERON:0011251 levator claviculae muscle - + - + - + nterior portion of transverse processes of C1 - C4 vertebrae dbpedia - + lateral half Wikipedia @@ -579216,8 +579196,8 @@ - - + + @@ -579229,24 +579209,24 @@ UBERON:0011263 femoral gland - + - + - + ISBN:0073040584 - + ISBN:0073040584 @@ -579417,7 +579397,7 @@ - + The quadratojugal is a small jaw bone that is present in most amphibians, reptiles, and birds, but has been lost in mammals. It is connected to the jugal as well as other bones, though these may vary with species. The quadratojugal bone is a small bone between the cheek and otic notch (Lecointre 380). Squamates (lizards and snakes) lack a quadratojugal bone (Schwenk 193). @@ -579436,7 +579416,7 @@ http://upload.wikimedia.org/wikipedia/commons/e/eb/Skull_synapsida_1.png https://upload.wikimedia.org/wikipedia/commons/6/6e/Archaeopteryx_skull.png - + @@ -579449,7 +579429,7 @@ - + temporal series ISBN:0073040584 @@ -579526,7 +579506,7 @@ - + A secondary tongue located below the primary tongue in prosimian primates and some primitive mammals. This structure does not have taste buds or salivary glands. Wikipedia:Sublingua @@ -579536,14 +579516,14 @@ UBERON:0011268 sublingua - + - + Wikipedia @@ -579577,7 +579557,7 @@ - + The part of the trunk that is in the dorsum[cjm]. In humans, the subdivision of trunk which is demarcated from the trunk proper by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines, the external surface of the posterior abdominal wall; together with the trunk proper, it constitutes the trunk[FMA] EMAPA:35162 @@ -579592,7 +579572,7 @@ UBERON:0011270 dorsal trunk - + @@ -579605,7 +579585,7 @@ - + FMA @@ -579679,8 +579659,8 @@ - - + + compare with 'stratum basale of epidermis'. This class is the source for many adult structures - see WP2062. See also: 'enveloping layer of ectoderm' EHDAA2:0001845 uberon @@ -579689,11 +579669,11 @@ UBERON:0011272 embryonic skin basal layer - + - + @@ -579706,13 +579686,13 @@ - + EHDAA2 - + EHDAA2 @@ -580588,8 +580568,8 @@ - - + + A remnant of the Mesonephric duct that can be found next to the ovary and fallopian tube. FMA:18691 Wikipedia:Epoophoron @@ -580604,11 +580584,11 @@ UBERON:0011283 epoophoron - + - + @@ -580621,13 +580601,13 @@ - + Wikipedia - + Wikipedia @@ -581007,8 +580987,8 @@ - - + + EHDAA2:0001063 EHDAA:9563 manubrium sterni pre-cartilage condensation @@ -581016,11 +580996,11 @@ UBERON:0011301 manubrium sternum pre-cartilage condensation - + - + @@ -581033,13 +581013,13 @@ - + EHDAA2 - + EHDAA2 @@ -581175,7 +581155,7 @@ - + The superficial temporalis muscle is a separable part of the temporalis muscle that attaches to the temporalis fascia. MFMO:0000087 @@ -581189,14 +581169,14 @@ UBERON:0011305 superficial part of temporalis - + - + MFMO @@ -581348,7 +581328,7 @@ - + The suprazygomatic part of the temporalis muscle is a separable part of the deep temporalis that attaches to the superior surface of the temporal root of the zygomatic arch. MFMO:0000088 temporalis pars suprazygomatica @@ -581357,14 +581337,14 @@ UBERON:0011307 suprazygomatic part of temporalis - + - + FEED @@ -581441,7 +581421,7 @@ - + The zone of the mandible that carries the teeth. FMA:52827 @@ -581455,14 +581435,14 @@ body of mandible - + - + FMA @@ -581498,7 +581478,7 @@ - + .The fossa for the masseter. In some therapsids, the coronoid process of the dentary bears a large external depression which accommodates the masseter -- an important muscle in closing and in grinding motions of the jaw. fossa on the lateral surface of the mandible, located in the superior part of the ascending process.[FEED] uberon @@ -581506,14 +581486,14 @@ UBERON:0011310 masseteric fossa - + - + FMA @@ -582046,7 +582026,7 @@ - + The fibrocartilaginous plate that separates the joint into upper and lower cavities. BTO:0003675 FMA:57059 @@ -582067,7 +582047,7 @@ UBERON:0011319 disk of temporomandibular joint - + @@ -582080,7 +582060,7 @@ - + BTO @@ -582215,7 +582195,7 @@ - + A muscular branch of the mandibular nerve passing to the medial surface of the masseter muscle, which it innervates. FMA:53103 SCTID:280254006 @@ -582225,14 +582205,14 @@ UBERON:0011321 masseteric nerve - + - + FMA @@ -582396,8 +582376,8 @@ - - + + The superior laryngeal nerve is a branch of the vagus nerve. It arises from the middle of the ganglion nodosum and in its course receives a branch from the superior cervical ganglion of the sympathetic. It descends, by the side of the pharynx, behind the internal carotid artery, and divides into two branches: external laryngeal nerve internal laryngeal nerve A superior laryngeal nerve palsy changes the pitch of the voice and causes an inability to make explosive sounds. If no recovery is evident three months after the palsy initially presents, the damage is most likely to be permanent. A bilateral palsy presents as a tiring and hoarse voice. BAMS:sln @@ -582413,24 +582393,24 @@ superior laryngeal nerve - + - + - + Wikipedia - + FMA @@ -582477,7 +582457,7 @@ - + The deep temporal nerves, branches of the mandibular division of the trigeminal nerve, are two in number, anterior and posterior. They pass above the upper border of the pterygoideus externus and enter the deep surface of the temporalis. FMA:53187 SCTID:280255007 @@ -582488,14 +582468,14 @@ UBERON:0011327 deep temporal nerve - + - + FMA @@ -582983,7 +582963,7 @@ - + This is a neurosecretory organ rostral to the ampulla caudalis on the ventral surface of the distal end of the spinal cord. Receives axons from caudal neurosecretory nucleus, which contains Dahlgren cells that secrete urotensin I and II, implicated in osmotic regulation, cardiovascular function and reproduction[Butler]. BTO:0001848 @@ -582992,7 +582972,7 @@ Shares characteristics with neurohypophysis urophysis - + @@ -583005,7 +582985,7 @@ - + BTO @@ -583027,20 +583007,20 @@ - + A ventricle-like space at the end of the central canal. uberon UBERON:0011360 ampulla caudalis - + - + in caudal end of @@ -583509,7 +583489,7 @@ - + A transverse process of vertebra that is part of a vertebral bone 1. FMA:23981 SCTID:181895009 @@ -583518,14 +583498,14 @@ UBERON:0011370 transverse process of atlas - + - + FMA-abduced-lr @@ -583548,7 +583528,7 @@ - + @@ -583563,7 +583543,7 @@ - + @@ -583578,14 +583558,14 @@ UBERON:0011371 sternocephalicus muscle - + - + nuchal crest @@ -584112,7 +584092,7 @@ - + A chiasma of facial muscles held together by fibrous tissue, located lateral and slightly superior to each angle of the mouth. It is important in moving the mouth, facial expression and in dentistry. It derives its motor nerve supply from the facial nerve, and its blood supply from labial branches of the facial artery. It is contributed to by the following muscles: orbicularis oris, buccinator, levator anguli oris, depressor anguli oris, zygomaticus major, risorius quadratus labii superioris, quadratus labii inferioris. modiolus FMA:46837 @@ -584124,14 +584104,14 @@ facial modiolus https://github.com/obophenotype/uberon/issues/471 - + - + FMA @@ -584525,7 +584505,7 @@ - + @@ -584549,7 +584529,7 @@ UBERON:0011392 blood vessel internal elastic membrane - + @@ -584562,7 +584542,7 @@ - + MA @@ -584968,7 +584948,7 @@ - + @@ -584998,14 +584978,14 @@ iliococcygeus muscle - + - + FMA @@ -585064,7 +585044,7 @@ - + @@ -585084,14 +585064,14 @@ puborectalis muscle - + - + FMA @@ -585125,7 +585105,7 @@ - + @@ -585165,14 +585145,14 @@ pubococcygeus muscle - + - + FMA @@ -585413,7 +585393,7 @@ - + The Chondroglossus is sometimes described as a part of the Hyoglossus, but is separated from it by fibers of the Genioglossus, which pass to the side of the pharynx. It is about 2 cm. long, and arises from the medial side and base of the lesser cornu and contiguous portion of the body of the hyoid bone, and passes directly upward to blend with the intrinsic muscular fibers of the tongue, between the Hyoglossus and Genioglossus. FMA:46700 SCTID:244787000 @@ -585426,14 +585406,14 @@ UBERON:0011535 chondroglossus muscle - + - + FMA @@ -585558,7 +585538,7 @@ - + @@ -585582,14 +585562,14 @@ lumen of esophagus - + - + FMA @@ -585674,7 +585654,7 @@ - + The styloid process of the ulna projects from the medial and back part of the bone; it descends a little lower than the head, and its rounded end affords attachment to the ulnar collateral ligament of the wrist[WP,unvetted]. FMA:23628 @@ -585688,14 +585668,14 @@ styloid process of ulna - + - + FMA @@ -585918,8 +585898,8 @@ - - + + @@ -585935,24 +585915,24 @@ UBERON:0011577 flexural organ - + - + - + ZFA - + unvetted @@ -586085,7 +586065,7 @@ - + @@ -586103,14 +586083,14 @@ paired limb/fin skeleton - + - + ISBN:9780878932504 @@ -586159,7 +586139,7 @@ - + @@ -586182,14 +586162,14 @@ UBERON:0011583 stylopodial skeleton - + - + VSAO @@ -586258,7 +586238,7 @@ - + @@ -586286,14 +586266,14 @@ UBERON:0011584 zeugopodial skeleton - + - + VSAO @@ -586391,7 +586371,7 @@ - + Odontogenic tissue that is collagen-rich and characteristic of vertebrate teeth and tooth-like structures (e.g., odontodes) deposited by preodontoblasts and odontoblasts that are typically excluded from the matrix. EMAPA:36439 VSAO:0000071 @@ -586403,7 +586383,7 @@ UBERON:0011587 pre-dentine - + @@ -586416,7 +586396,7 @@ - + text definition @@ -586614,19 +586594,19 @@ - - + + EHDAA2:0002120 upper jaw future lip uberon UBERON:0011592 future upper lip - + - + @@ -586639,13 +586619,13 @@ - + fusion - + fusion @@ -586800,7 +586780,7 @@ - + @@ -586821,14 +586801,14 @@ jaw region http://eol.org/collections/11578 - + - + EMAPA FMA-abduced ZFA-abduced @@ -586847,14 +586827,14 @@ - + EHDAA2:0001020 lower jaw future lip uberon UBERON:0011596 future lower lip - + @@ -586867,7 +586847,7 @@ - + Wikipedia:Mandibular_prominence @@ -586922,7 +586902,7 @@ - + coronoid process AAO:0000103 TAO:0001673 @@ -586930,7 +586910,7 @@ UBERON:0011598 coronoid bone - + @@ -586943,7 +586923,7 @@ - + mandibular series ISBN:0073040584 @@ -586961,7 +586941,7 @@ - + @@ -586983,14 +586963,14 @@ UBERON:0011599 lenticular process of incus bone - + - + FMA @@ -587225,7 +587205,7 @@ - + @@ -587242,14 +587222,14 @@ carina of sternum http://upload.wikimedia.org/wikipedia/commons/6/69/Br%C3%A9chet.png - + - + Wikipedia @@ -587323,7 +587303,7 @@ - + Replacement bone that is bilaterally paired and (in teleosts) articulates with the neurocranium dorsally and the opercle posteriorly[TAO,modified]. Replacement bone that is bilaterally paired and articulates with the neurocranium dorsally and the opercle posteriorly.[TAO] relationship loss: overlaps hyomandibula-metapterygoid joint (TAO:0001979)[TAO] @@ -587343,7 +587323,7 @@ hyomandibular bone - + @@ -587356,7 +587336,7 @@ - + TAO @@ -587638,20 +587618,20 @@ - + uberon keratohyal element UBERON:0011609 ceratohyal element - + - + TAO-abduced @@ -587746,7 +587726,7 @@ - + Replacement bone that is bilaterally paired and articulates with the hypohyal cartilage or bone, dorsal and ventral hypohyals, and posterior ceratohyal posteriorly.[TAO] relationship loss: overlaps ceratohyal-branchiostegal ray joint (TAO:0001850)[TAO] @@ -587777,7 +587757,7 @@ UBERON:0011611 ceratohyal bone - + @@ -587790,7 +587770,7 @@ - + TAO @@ -587968,20 +587948,20 @@ - + The hypohyal is a ventral element of the hyoid arch which links the ceratohyal and the basihyal. uberon UBERON:0011613 hypohyal element - + - + TAO-abduced @@ -587997,21 +587977,21 @@ - + Skeletal element that is median and is the anterior-most element of the ventral hyoid arch. TAO:0001891 uberon UBERON:0011614 basihyal element - + - + TAO @@ -588084,7 +588064,7 @@ - + Replacement bone that is median and is the anterior-most bone of the ventral hyoid arch. TAO:0000316 VSAO_RETIRED:0000007 @@ -588095,7 +588075,7 @@ UBERON:0011618 basihyal bone - + @@ -588108,7 +588088,7 @@ - + TAO @@ -588445,8 +588425,8 @@ - - + + A zone of the frontal bone that consists of two thin triangular plates, the orbital plates, which form the vaults of the orbits, and are separated from one another by a median gap, the ethmoidal notch. FMA:52849 Wikipedia:Orbital_part_of_frontal_bone @@ -588457,24 +588437,24 @@ UBERON:0011627 orbital part of frontal bone - + - + - + FMA - + FMA-abduced-lr @@ -588516,32 +588496,32 @@ - - + + EHDAA2:0001495 future premaxilla uberon UBERON:0011628 early premaxilla - + - + - + ISBN:0073040584 - + EHDAA2 @@ -588552,20 +588532,20 @@ - + supratemporal uberon UBERON:0011629 supratemporal bone - + - + temporal series ISBN:0073040584 @@ -588577,20 +588557,20 @@ - + intertemporal uberon UBERON:0011630 intertemporal bone - + - + temporal series ISBN:0073040584 @@ -588602,20 +588582,20 @@ - + tabular uberon UBERON:0011631 tabular bone - + - + temporal series ISBN:0073040584 @@ -588627,7 +588607,7 @@ - + A palatal bone which -- like many palatal bones -- may originally have developed as a dermal bone replacing part of the palatoquadrate, the primitive upper jaw. Like the palatine (also called dermopalatine), the ectopterygoid replaces the middle part of the autopalatine. It may be serially homologous with the palatine(s), but is somewhat specialized, being the last (most posterior in palatal view) of the series and bordering the fossa for the jaw muscles. In a typical tetrapod it abuts the palatine anteriorly, the maxilla laterally, the pterygoid or the fossa mandubuaris medially, and the fossa posteriorly. Dermal bone that forms the lateral border of the palate and articulates with the quadrate posteriorly, the entopterygoid medially and the dermopalatine and/or autopalatine antero-laterally. The ectopterygoid is a paired bone.[TAO] The ectopterygoid is often toothed.[TAO] @@ -588642,14 +588622,14 @@ ectopterygoid bone - + - + may be serially homologous with the palatines http://palaeos.com/vertebrates/bones/dermal/palatal-palatines.html @@ -588705,7 +588685,7 @@ - + The splenial is a small bone in the lower jaw of reptiles, amphibians and birds, usually located on the lingual side (closest to the tongue) between the angular and suprangular. AAO:0000573 Wikipedia:Splenial @@ -588715,7 +588695,7 @@ UBERON:0011635 splenial bone - + @@ -588728,7 +588708,7 @@ - + mandibular series ISBN:0073040584 @@ -588752,7 +588732,7 @@ - + @@ -588777,7 +588757,7 @@ UBERON:0011636 surangular bone - + @@ -588791,7 +588771,7 @@ - + mandibular series ISBN:0073040584 @@ -588867,7 +588847,7 @@ - + Osseous element of intramembranous origin that extends along the lingual margin of Meckel's cartilage. AAO:0000458 http://palaeos.com/vertebrates/bones/dermal/images/Dentary1.gif @@ -588876,7 +588856,7 @@ UBERON:0011637 prearticular bone - + @@ -588889,7 +588869,7 @@ - + mandibular series ISBN:0073040584 @@ -588933,7 +588913,7 @@ - + @@ -588957,7 +588937,7 @@ UBERON:0011639 frontoparietal bone - + @@ -588970,7 +588950,7 @@ - + orbital series ISBN:0073040584 @@ -589173,14 +589153,14 @@ - + An epithelium that develops_from a ectoderm and is part of a oral epithelium. EHDAA2:0004137 uberon UBERON:0011642 oral epithelium from ectoderm - + @@ -589193,7 +589173,7 @@ - + EHDAA2 @@ -589210,7 +589190,7 @@ - + A single large dorsal limb rotator muscle in lower tetrapods that runs from the lumber region and girdle to the femur. 3 muscles differentiate from this: psoas, iliacus and pectineus. UBERON:0014843 @@ -589219,14 +589199,14 @@ UBERON:0011643 puboischiofemoralis internus muscle - + - + ISBN:0073040584 @@ -589442,9 +589422,9 @@ - - - + + + Hyoid muscle that originates at the ventrolateral margin of the pterotic and inserts in the dorsomesial edge of the opercle. The levator operculi is responible for jaw depression, its force of contraction is transmitted through the opercular series and the interoperculo-mandibular ligament to the lower jaw. The depressor mandibulae of tetrapods, which opens the jaws, is the homologue of the levator operculi and epihyoidean. In mammals, the depressor mandibulae evolves into the stapedius (...).[well established][VHOG] TAO:0000537 @@ -589455,15 +589435,15 @@ UBERON:0011649 levator operculi - + - + - + @@ -589476,19 +589456,19 @@ - + ISBN:0073040584 - + ISBN:0073040584 - + Kardong @@ -589520,38 +589500,38 @@ - + - + The depressor mandibulae of tetrapods, which opens the jaws, is the homologue of the levator operculi and epihyoidean. In mammals, the depressor mandibulae evolves into the stapedius (...).[well established][VHOG] uberon UBERON:0011650 Muscle in sharks that is homologous to levator operculi and depressor mandibulae / stapedius epihyoidean - + - + - + ISBN:0073040584 - + ISBN:0073040584 @@ -589683,7 +589663,7 @@ - + @@ -589699,14 +589679,14 @@ UBERON:0011653 diapophysis of neural arch - + - + ISBN:0073040584 @@ -590261,21 +590241,21 @@ - + Enlarged section of perichordal tube that is arranged serially but out of phase with segmental musculature. AAO:0000738 uberon UBERON:0011675 perichordal ring - + - + AAO @@ -590461,7 +590441,7 @@ - + @@ -590484,7 +590464,7 @@ adductor mandibulae - + @@ -590497,7 +590477,7 @@ - + ISBN:0073040584 @@ -590551,7 +590531,7 @@ - + A muscle derivative of the mandibular levator that runs from the chondrocranium to the palatoquadrate cartilage. Found in sharks. In some fishes such as the chimera and in tetrapods the palatoquadrate becomes fused to the braincase and this muscle is absent. @@ -590559,7 +590539,7 @@ UBERON:0011684 levator palatoquadrati - + @@ -590572,7 +590552,7 @@ - + ISBN:0073040584 @@ -590595,8 +590575,8 @@ - - + + A jaw muscle arises near the orbit and tapers as it passes posteriorly to its insertion on the adductor mandibulae. Found in sharks. preorbitalis @@ -590604,11 +590584,11 @@ UBERON:0011685 preorbitalis muscle - + - + @@ -590621,13 +590601,13 @@ - + ISBN:0073040584 - + ISBN:0073040584 @@ -590644,14 +590624,14 @@ - + spiracularis uberon UBERON:0011686 spiracularis muscle - + @@ -590664,7 +590644,7 @@ - + ISBN:0073040584 @@ -590680,31 +590660,31 @@ - - + + levator hyomandibulae uberon UBERON:0011687 levator hyomandibulae muscle - + - + - + ISBN:0073040584 - + ISBN:0073040584 @@ -590751,8 +590731,8 @@ - - + + Skeletal tissue that is hypermineralized and aprismatic and deposited by a combination of ameloblasts and odontoblasts that are excluded from the matrix. Enameloid develops from pre-enameloid tissue. VHOG:0001565 VSAO:0000113 @@ -590766,11 +590746,11 @@ UBERON:0011692 enameloid - + - + @@ -590783,13 +590763,13 @@ - + ZFA - + VSAO @@ -590839,19 +590819,19 @@ - - + + VHOG:0001157 extraembryonic umbilical artery uberon UBERON:0011693 extraembryonic portion of umbilical artery - + - + @@ -590864,13 +590844,13 @@ - + EHDAA2-abduced - + FMA @@ -591007,7 +590987,7 @@ - + @@ -591023,14 +591003,14 @@ UBERON:0011698 midgut loop - + - + VHOG @@ -591070,7 +591050,7 @@ - + A hepatic sinusoid that is part of a caudate lobe of liver. EHDAA2:0001006 EHDAA:6992 @@ -591081,14 +591061,14 @@ UBERON:0011737 caudate lobe hepatic sinusoid - + - + EHDAA2 @@ -591127,7 +591107,7 @@ - + A hepatic sinusoid that is part of a quadrate lobe of liver. EHDAA2:0001013 EHDAA:8084 @@ -591138,14 +591118,14 @@ UBERON:0011738 quadrate lobe hepatic sinusoid - + - + EHDAA2 @@ -591212,7 +591192,7 @@ - + A cardiac valve leaflet that is part of a aortic valve. Extensive conservation of valve developmental mechanisms also has been observed among vertebrate species including chicken, mouse, and human.[uncertain][VHOG] EMAPA:18627 @@ -591223,14 +591203,14 @@ aortic valve leaflet - + - + MP @@ -591674,7 +591654,7 @@ - + compare with habenula The stalk emanates from the diencephalic roof at a left-of-medial position.[TAO] relationship loss: part_of pineal complex (TAO:0001359)[TAO] @@ -591693,14 +591673,14 @@ UBERON:0011768 pineal gland stalk - + - + EMAPA VHOG @@ -591958,7 +591938,7 @@ - + @@ -591992,14 +591972,14 @@ Alternate: leads from the utricle of the internal ear to the endolymphatic duct. - http://medical-dictionary.thefreedictionary.com/utriculosaccular+duct. We assume a 3-way connection utriculosaccular duct - + - + MP @@ -593385,7 +593365,7 @@ - + Superficial fascia is found in the subcutis in most regions of the body, blending with the reticular layer of the dermis. It is present on the face, over the upper portion of the sternocleidomastoid, at the nape of the neck, and overlying the sternum. It is comprised mainly of loose areolar connective tissue and adipose and is the layer that primarily determines the shape of a body. In addition to its subcutaneous presence, this type of fascia surrounds organs and glands, neurovascular bundles, and is found at many other locations where it fills otherwise unoccupied space. It serves as a storage medium of fat and water; as a passageway for lymph, nerve and blood vessels; and as a protective padding to cushion and insulate. Superficial fascia is present, but does not contain fat, in the eyelids, ear, scrotum, penis and clitoris. we follow FMA, BTO, NCIT and WP in making this a distinct class from hypodermis. BTO:0004525 @@ -593403,14 +593383,14 @@ superficial fascia - + - + FMA @@ -594437,7 +594417,7 @@ - + @@ -594473,14 +594453,14 @@ Alternate def: The internal acoustic meatus (or internal auditory meatus ) is an opening on the medial surface of the petrous temporal bone. It is through this passageway that the facial nerve (cranial nerve VII) and vestibulocochlear nerve (cranial nerve VIII) pass to reach their sites of innervation. The vestibulocochlear nerve divides at the internal acoustic meatus to continue as separate vestibular and cochlear components. [MURDOCH:908] internal acoustic meatus - + - + MP @@ -595196,7 +595176,7 @@ - + The oral part of the tongue anterior to the terminal sulcus. FMA:54641 SCTID:362090005 @@ -595206,14 +595186,14 @@ UBERON:0011876 body of tongue - + - + FMA @@ -595342,7 +595322,7 @@ - + A muscle layer that is part of a wall of esophagus. In the upper esophagus, part of the externa is skeletal muscle, rather than smooth muscle FMA:62998 @@ -595356,14 +595336,14 @@ UBERON:0011878 muscle layer of esophagus - + - + upper part Wikipedia:Muscular_layer @@ -595426,7 +595406,7 @@ - + The testes, at an early period of fetal life, are placed at the back part of the abdominal cavity, behind the peritoneum, and each is attached by a peritoneal fold, the mesorchium, to the mesonephros. AAO:0010530 EMAPA:17971 @@ -595437,7 +595417,7 @@ UBERON:0011879 mesorchium - + @@ -595450,7 +595430,7 @@ - + EMAPA @@ -595473,7 +595453,7 @@ - + @@ -595515,7 +595495,7 @@ anterior uvea - + @@ -595528,7 +595508,7 @@ - + MP @@ -595877,7 +595857,7 @@ - + @@ -595902,7 +595882,7 @@ UBERON:0011899 epimysium - + @@ -595915,7 +595895,7 @@ - + FMA @@ -595951,7 +595931,7 @@ - + The fibrous sheath enveloping each of the primary bundles of skeletal muscle fibers. FMA:9728 NCIT:C33299 @@ -595963,7 +595943,7 @@ UBERON:0011900 perimysium - + @@ -595976,7 +595956,7 @@ - + FMA @@ -596006,21 +595986,21 @@ - + FMA:70945 uberon UBERON:0011901 The hair matrix surrounds the top and sides of the dermal papilla. The hair matrix cells give rise to 6 different types of cells that make up the different layers of the hair shaft and the inner root sheath. hair matrix - + - + FMA @@ -596111,7 +596091,7 @@ - + @@ -596138,14 +596118,14 @@ plantaris - + - + Lateral supracondylar ridge of femur above lateral head of gastrocnemius @@ -596235,7 +596215,7 @@ - + Missing definition for term UBERON:0011907. Please replace it using linked reference. @@ -596252,14 +596232,14 @@ Mammalian gastrocnemius medialis and flexor hallucis longus arise from reptilian gastrocnemius internus[Kardong] gastrocnemius medialis - + - + FMA @@ -596301,7 +596281,7 @@ - + Missing definition for term UBERON:0011908. Please replace it using linked reference. EMAPA:36249 @@ -596317,14 +596297,14 @@ Mammalian gastrocnemius lateralis, soleus and plantaris arise from reptilian gastrocnemius externus[Kardong] gastrocnemius lateralis - + - + FMA @@ -596521,7 +596501,7 @@ - + @@ -596540,7 +596520,7 @@ line of Schwalbe - + @@ -596553,7 +596533,7 @@ - + MP @@ -596617,7 +596597,7 @@ - + Masses of developing blood cells attached to endothelium in the yolk sac. EHDAA2:0000177 EMAPA:16115 @@ -596628,14 +596608,14 @@ yolk sac blood island - + - + EHDAA2 @@ -596665,8 +596645,8 @@ - - + + in EHDAA2 gives rise to connecting stalk blood vessels and extraembryonic umbilical vessels EHDAA2:0003242 blood island of umbilical vesicle @@ -596675,11 +596655,11 @@ UBERON:0011921 connecting stalk blood islands - + - + @@ -596692,13 +596672,13 @@ - + EHDAA2 - + EHDAA2 @@ -597213,7 +597193,7 @@ - + @@ -597246,14 +597226,14 @@ pilosebaceous unit - + - + ISBN:0123813611 @@ -597359,7 +597339,7 @@ - + A bulb of hair follicle that is part of a vibrissa unit. EMAPA:26716 MA:0000783 @@ -597371,14 +597351,14 @@ vibrissa hair bulb https://github.com/obophenotype/mouse-anatomy-ontology/issues/56 - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -597418,7 +597398,7 @@ - + A hair root sheath that is part of a vibrissa unit. EMAPA:26724 MA:0000784 @@ -597429,14 +597409,14 @@ UBERON:0011937 vibrissa root sheath - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -597834,7 +597814,7 @@ - + The inner cell layer of the mammary epithelium bilayer that lines the luminal surface of mammary gland ducts and alveoli; luminal cells have only limited contact with the underlying basement membrane and surrounding connective tissue; they are secretory epithelial cells characterized by the expression of the receptors for systemic hormones, i.e. estrogens, progesterone and prolactin. EMAPA:37902 FMA:74458 @@ -597843,14 +597823,14 @@ UBERON:0011950 mammary gland luminal epithelium - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -597891,7 +597871,7 @@ - + A luminal layer of epithelium that is part of a prostate gland. FMA:74262 subdivision of luminal layer of epithelium of prostatic gland @@ -597899,14 +597879,14 @@ UBERON:0011951 prostate luminal epithelium - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -598158,7 +598138,7 @@ - + @@ -598190,7 +598170,7 @@ UBERON:0011958 acetabular labrum - + @@ -598203,7 +598183,7 @@ - + FMA @@ -598258,7 +598238,7 @@ - + A ring of fibrocartilage attached to the margin of the glenoid cavity of the scapula. consider classifying as 'annulus fibrosus' glenoid labrum @@ -598273,7 +598253,7 @@ UBERON:0011959 glenoid labrum of scapula - + @@ -598286,7 +598266,7 @@ - + FMA @@ -598517,7 +598497,7 @@ - + @@ -598534,14 +598514,14 @@ UBERON:0011963 talocalcaneonavicular joint - + - + FMA-modified @@ -598585,7 +598565,7 @@ - + @@ -598609,14 +598589,14 @@ UBERON:0011964 calcaneocuboid joint - + - + FMA-modified @@ -598791,7 +598771,7 @@ - + The facet of the tubercle of the rib forms an articulation with the adjacent transverse process of a thoracic vertebra. This is a plane type synovial joint called the costotransverse joint. This articulation is present in all but the eleventh and twelfth ribs. Ribs 1 to 10 have two joints in close proximity posteriorly; the costovertebral joints and the costotranseverse joints. This arrangement restrains the motion of the ribs allowing them to work in a parallel fashion during breathing. If a typical rib had only one joint posteriorly the resultant swivel action would allow a rib to be non-parallel with respect to the neighboring ribs making for a very inefficient respiratory mechanism. The ventral rami innervate the costotransverse joints. Therefore, therapeutic medial branch blocks are ineffectual. The ligaments of the joint are: Articular capsule Posterior costotransverse Anterior costotransverse Ligament of the neck of the rib Ligament of the tubercle of the rib. FMA:7952 SCTID:263328007 @@ -598801,7 +598781,7 @@ UBERON:0011967 costotransverse joint - + @@ -598814,7 +598794,7 @@ - + FMA @@ -599856,6 +599836,7 @@ coelomic EHDAA2:0004731 Wikipedia:Coelom + ZFA:0001438 enterocoelom haemocoelom schizocoelom @@ -600064,7 +600045,7 @@ - + A bronchiole that is part of a lower lobe of right lung. EHDAA2:0004094 EMAPA:19004 @@ -600077,14 +600058,14 @@ UBERON:0012059 right lung lower lobe bronchiole - + - + EHDAA2 @@ -600602,7 +600583,7 @@ - + @@ -600626,14 +600607,14 @@ bony part of hard palate - + - + FMA @@ -600979,7 +600960,7 @@ - + @@ -600992,14 +600973,14 @@ UBERON:0012081 patella pre-cartilage condensation - + - + EMAPA @@ -601014,9 +600995,9 @@ - + - + @@ -601032,7 +601013,7 @@ UBERON:0012082 bronchial lumen - + @@ -601041,20 +601022,20 @@ - + - + FMA - + FMA @@ -601679,7 +601660,7 @@ - + @@ -601705,14 +601686,14 @@ UBERON:0012108 postorbital bar - + - + orbital series @@ -602526,7 +602507,7 @@ - + Outermost point on an external nose or snout. EMAPA:37915 FMA:59518 @@ -602543,14 +602524,14 @@ nose tip - + - + FMA @@ -602887,7 +602868,7 @@ - + @@ -602908,14 +602889,14 @@ A prepollex does not contain phalanges nor does it articulate with a metacarpal. It articulates with elements of the carpal (wrist) skeleton[AAO:DB]. editor note: TODO add articulation relations prepollex skeleton - + - + AAO @@ -603320,7 +603301,7 @@ - + A subdivision of the manus skeleton consisting of both manual acropodial skeleton and metacarpal skeleton, but excluding the carpal skeleton. some sources call this the acropodium. see https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod uberon @@ -603329,14 +603310,14 @@ skeleton of manual digitopodium https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod - + - + FMA @@ -603514,7 +603495,7 @@ - + BAMS:ACBc BAMS:AcbC DHBA:10340 @@ -603534,14 +603515,14 @@ core of nucleus accumbens - + - + NIFSTD @@ -603587,7 +603568,7 @@ - + Crescent shaped outer zone of the nucleus accumbens, defined by a combination of chemoarchitecture and afferent and efferent connections. The shell is distinguished from the more centrally located core through the notable reduction in staining for the calcium-binding protein calbindin D28K, which is dense in the core and virtually absent in the shell. BAMS:ACBs BAMS:AcbSh @@ -603607,14 +603588,14 @@ shell of nucleus accumbens - + - + NIFSTD @@ -603796,8 +603777,8 @@ - - + + EHDAA2:0000494 EMAPA:16794 SCTID:361514006 @@ -603810,11 +603791,11 @@ UBERON:0012175 acoustico-facial VII-VIII ganglion complex - + - + @@ -603827,13 +603808,13 @@ - + EHDAA2 - + cjm @@ -604653,7 +604634,7 @@ - + @@ -604681,7 +604662,7 @@ urinary bladder vasculature - + @@ -604693,7 +604674,7 @@ - + EMAPA @@ -605078,7 +605059,7 @@ - + @@ -605107,14 +605088,14 @@ UBERON:0012243 nuptial pad - + - + ISBN:0073040584 @@ -605149,20 +605130,20 @@ - + A temporary layer between old and new skin that is invalided by white blood cells[Kardong]. uberon UBERON:0012244 stratum intermedium of epidermis - + - + ISBN:0073040584 @@ -605407,7 +605388,7 @@ - + @@ -605449,14 +605430,14 @@ ectocervix - + - + BTO @@ -605850,9 +605831,9 @@ - - - + + + A manual digit found in Aves that is the most preaxial position and is morphologically similar to digit 1 in the standard tetrapod configuration and develops from embryonic digit 2, with contributions from embryonic digit 1. alula alula (Aves) @@ -605866,34 +605847,34 @@ Hypothesized to be homologous to manual digit 1 of other tetrapods. Develops from the embryonic digit that is positionally the 2nd, with contributions from the 1st alular digit - + - + - + - + PhenotypeRCN:Oct2012 - + PMID:10220427 - + PMID:10220427 @@ -605929,8 +605910,8 @@ - - + + A manual digit found in Aves that is morphologically similar to digit 2 in the standard tetrapod configuration and develops from embryonic digit 3. uberon digit II of manus @@ -605943,24 +605924,24 @@ Hypothesized to be homologous to manual digit 2 of other tetrapods manual major digit (Aves) - + - + - + PhenotypeRCN:Oct2012 - + PMID:10220427 @@ -606000,8 +605981,8 @@ - - + + A manual digit found in Aves that is morphologically similar to digit 3 in the standard tetrapod configuration and develops from embryonic digit 4. uberon digit III of manus @@ -606014,24 +605995,24 @@ Hypothesized to be homologous to manual digit 3 of other tetrapods manual minor digit (Aves) - + - + - + PhenotypeRCN:Oct2012 - + PMID:10220427 @@ -606850,7 +606831,7 @@ - + One of two hemispheres of the embryo at the zygote or blastula stage[WP,modified]. Like many of the early_development classes in this ontology, this class requires review for its applicability across vertebrates. See the tracker item for further discussion. FMA:293351 @@ -606862,14 +606843,14 @@ hemisphere of embryo https://upload.wikimedia.org/wikipedia/commons/5/5e/Oocyte_Poles.jpg - + - + XAO @@ -606910,7 +606891,7 @@ - + @@ -606925,14 +606906,14 @@ UBERON:0012287 Rathkes pouch epithelium - + - + EHDAA2 @@ -607207,7 +607188,7 @@ - + @@ -607222,14 +607203,14 @@ We presume this is distinct from AAO:0001003, an external integumentary structure - check with amphibian anatomy ontology developers. AO notes: the text def states mesenchymal swelling, EHDAA2 splits into mesenchymal and epithelial parts embryonic cloacal fold - + - + EHDAA2 @@ -607258,7 +607239,7 @@ - + A slight elevation flanking the cloacal membrane and derived from a cloacal fold; anal folds form the border of the anus. EHDAA2:0004012 EMAPA:37392 @@ -607266,7 +607247,7 @@ UBERON:0012293 anal fold - + @@ -607279,7 +607260,7 @@ - + EHDAA2 @@ -607514,7 +607495,7 @@ - + @@ -607533,14 +607514,14 @@ male urethral crest - + - + cjm @@ -607594,7 +607575,7 @@ - + @@ -607612,14 +607593,14 @@ female urethral crest - + - + cjm @@ -608247,7 +608228,7 @@ - + EHDAA2:0004599 EMAPA:17637 FMA:312685 @@ -608255,7 +608236,7 @@ UBERON:0012312 maxillary process ectoderm - + @@ -608268,7 +608249,7 @@ - + EHDAA2 @@ -608281,9 +608262,9 @@ - - - + + + EHDAA2:0000039 EMAPA:16389 ectoderm of maxillary component @@ -608291,15 +608272,15 @@ UBERON:0012313 1st arch maxillary ectoderm - + - + - + @@ -608312,19 +608293,19 @@ - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -608452,7 +608433,7 @@ - + @@ -608496,14 +608477,14 @@ UBERON:0012316 primitive palate - + - + palatal series ISBN:0073040584 @@ -608836,7 +608817,7 @@ - + The deep cervical artery (Profunda cervicalis) is an artery of the neck. FMA:10659 @@ -608848,14 +608829,14 @@ deep cervical artery - + - + FMA @@ -608877,7 +608858,7 @@ - + The ascending cervical artery is a small branch which arises from the inferior thyroid artery as that vessel is passing behind the carotid sheath; it runs up on the anterior tubercles of the transverse processes of the cervical vertebrC& in the interval between the Scalenus anterior and Longus capitis. To the muscles of the neck it gives twigs which anastomose with branches of the vertebral, and it sends one or two spinal branches into the vertebral canal through the intervertebral foramina to be distributed to the medulla spinalis and its membranes, and to the bodies of the vertebrC&, in the same manner as the spinal branches from the vertebral. It anastomoses with the ascending pharyngeal and occipital arteries. FMA:52489 @@ -608889,14 +608870,14 @@ ascending cervical artery - + - + FMA Wikipedia @@ -609078,7 +609059,7 @@ - + Small saliences on the ridge of the glans of the male genital organs. FMA:19653 @@ -609090,14 +609071,14 @@ UBERON:0012327 pearly penile papule - + - + FMA @@ -609289,11 +609270,21 @@ - The mesosalpinx is part of the lining of the abdominal cavity in higher vertebrates, specifically the portion of the broad ligament that stretches from the uterine tube to the level of the ovary. + + + + + + + A serous layer that is part of the peritoneal lining of the abdominal cavity in higher vertebrates, specifically the portion of the broad ligament that stretches from the uterine (fallopian) tube to the ovary. It is made up of epithelial cells of mesothelium and a mesh of serous membrane lining. FMA:19808 SCTID:279900000 Wikipedia:Mesosalpinx + fallopian tube mesosalpinx + mesentery of fallopian tube + mesentery of uterine tube + serous layer of fallopian tube uberon UBERON:0012331 @@ -609302,8 +609293,28 @@ - The mesosalpinx is part of the lining of the abdominal cavity in higher vertebrates, specifically the portion of the broad ligament that stretches from the uterine tube to the level of the ovary. + A serous layer that is part of the peritoneal lining of the abdominal cavity in higher vertebrates, specifically the portion of the broad ligament that stretches from the uterine (fallopian) tube to the ovary. It is made up of epithelial cells of mesothelium and a mesh of serous membrane lining. + PMID:29763118 Wikipedia:Mesosalpinx + doi:10.1016/B978-0-12-801238-3.64401-X + + + + + mesentery of fallopian tube + PMID:29763118 + + + + + mesentery of uterine tube + PMID:29763118 + + + + + serous layer of fallopian tube + doi:10.1016/B978-0-12-801238-3.64401-X @@ -609489,7 +609500,7 @@ - + @@ -609506,14 +609517,14 @@ UBERON:0012336 perianal skin - + - + MA @@ -609535,7 +609546,7 @@ - + The cauda equina is a structure within the lower end of the spinal column of most vertebrates, that consists of nerve roots and rootlets from above. The space in which the cerebrospinal fluid is present is actually an extension of the subarachnoid space. EMAPA:37468 FMA:52590 @@ -609551,14 +609562,14 @@ UBERON:0012337 cauda equina - + - + MESH @@ -610279,20 +610290,20 @@ - + EHDAA2:0004588 uberon UBERON:0012361 internal anal region - + - + EHDAA2 @@ -610449,7 +610460,7 @@ - + A muscle layer that is part of an intestine. FMA:15697 intestinal muscularis propria @@ -610459,14 +610470,14 @@ UBERON:0012367 muscle layer of intestine - + - + FMA @@ -610869,7 +610880,7 @@ - + @@ -610894,14 +610905,14 @@ muscle layer of urinary bladder - + - + FMA @@ -611091,7 +611102,7 @@ - + A circular muscle layer of muscular coat that is part of a small intestine smooth muscle. EMAPA:37562 FMA:14935 @@ -611109,14 +611120,14 @@ UBERON:0012401 small intestine smooth muscle circular layer - + - + FMA @@ -611206,7 +611217,7 @@ - + A longitudinal muscle layer of muscular coat that is part of a small intestine smooth muscle. EMAPA:37563 FMA:14936 @@ -611224,14 +611235,14 @@ UBERON:0012402 small intestine smooth muscle longitudinal layer - + - + FMA @@ -611387,7 +611398,7 @@ - + The taeniae coli (also teniae coli) are three separate longitudinal ribbons of smooth muscle on the outside of the ascending, transverse, descending and sigmoid colons. They are visible, and can be seen just below the serosa or fibrosa. They are the Mesocolic, Free and Omental Coli. The teniae coli contracts length wise to produce the haustra, the bulges in the colon. The bands converge at the root of the vermiform appendix and the rectum. These bands correspond to the outer layer of the muscularis externa, in other portions of the digestive tract. FMA:15041 @@ -611403,14 +611414,14 @@ taenia coli - + - + FMA @@ -611852,7 +611863,7 @@ - + @@ -611874,7 +611885,7 @@ UBERON:0012429 hematopoietic tissue - + @@ -611887,7 +611898,7 @@ - + defitional @@ -612974,7 +612985,7 @@ - + @@ -612991,14 +613002,14 @@ UBERON:0012463 cloacal lumen - + - + cjm @@ -613241,20 +613252,20 @@ - + EHDAA2:0004589 uberon UBERON:0012469 external anal region - + - + EHDAA2 @@ -613285,7 +613296,7 @@ - + @@ -613318,14 +613329,14 @@ UBERON:0012471 hepatogastric ligament - + - + FMA @@ -613363,7 +613374,7 @@ - + @@ -613387,14 +613398,14 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb - + - + FMA @@ -613491,7 +613502,7 @@ - + @@ -613507,14 +613518,14 @@ UBERON:0012474 hepatic cecum - + - + BTO @@ -613553,7 +613564,7 @@ - + @@ -613573,14 +613584,14 @@ skeleton of pectoral complex - + - + FMA @@ -613649,7 +613660,7 @@ - + @@ -613669,14 +613680,14 @@ skeleton of pelvic complex - + - + FMA @@ -613728,8 +613739,8 @@ - - + + The posterior region of the neck, including the suboccipital region. nuchal nape @@ -613752,11 +613763,11 @@ dorsal part of neck - + - + @@ -613769,13 +613780,13 @@ - + FMA - + FMA @@ -614418,7 +614429,7 @@ - + A muscularis mucosa that is part of a duodenum. EMAPA:27243 @@ -614434,14 +614445,14 @@ muscularis mucosae of duodenum - + - + FMA @@ -614475,7 +614486,7 @@ - + A muscularis mucosa that is part of a rectum. EMAPA:27093 FMA:15687 @@ -614486,14 +614497,14 @@ UBERON:0012497 muscularis mucosae of rectum - + - + FMA @@ -614686,7 +614697,7 @@ - + A serous membrane that is part of a fundus of stomach. EMAPA:27157 FMA:17073 @@ -614695,14 +614706,14 @@ UBERON:0012503 serosa of fundus of stomach - + - + FMA @@ -615085,7 +615096,7 @@ - + The ampulla is the second portion of the uterine tube. It is an intermediate dilated portion, which curves over the ovary. It is the most common site of human fertilization. The word ampulla is from the Latin for flask. BTO:0004285 @@ -615104,14 +615115,14 @@ ampulla of fallopian tube - + - + FMA @@ -616465,7 +616476,7 @@ - + Just before each crus of the penis meets its fellow it presents a slight enlargement, named by Kobelt the bulb of the corpus spongiosum penis. It is homologous to the vestibular bulbs in females. FMA:19614 Wikipedia:Bulb_of_penis @@ -616481,14 +616492,14 @@ UBERON:0013128 bulb of penis - + - + FMA @@ -616658,9 +616669,9 @@ - - - + + + One of the small straight arteries of the red pulp of the spleen; a branch of the spleen central artery that supplies the red pulp[WP,modified]. FMA:16038 @@ -616672,34 +616683,34 @@ penicillar arteriole - + - + - + - + FMA - + Wikipedia:Trabecular_arteries - + Wikipedia:Trabecular_arteries @@ -616736,7 +616747,7 @@ - + A phrenic artery that arises from the lower part of the thoracic aorta and is distributed to the posterior part of the upper surface of the diaphragm, and anastomoses with the musculophrenic and pericardiacophrenic arteries. FMA:4163 @@ -616750,14 +616761,14 @@ superior phrenic artery - + - + Wikipedia @@ -616872,7 +616883,7 @@ - + A vein that drains a lip. SCTID:367664002 labial vein of face @@ -616883,14 +616894,14 @@ UBERON:0013136 vein of lip - + - + FMA @@ -616969,8 +616980,8 @@ - - + + @@ -616993,24 +617004,24 @@ https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb - + - + - + FMA - + FMA-modified @@ -617165,7 +617176,7 @@ - + @@ -617183,7 +617194,7 @@ UBERON:0013141 capillary bed - + @@ -617196,7 +617207,7 @@ - + FMA @@ -617331,7 +617342,7 @@ - + FMA:44559 uberon @@ -617341,14 +617352,14 @@ The term genicular venous plexus (plexus venosus genicularis) should replace the term genicular veins. At the knee, deep veins do not correspond exactly to the branches of the popliteal artery (articular arteries). They are arranged in a complex plexus of interconnecting veins.[http://www.veinsurg.com/fr/biblio/echodoppler/echodoppler_11.php] vein of genicular venous plexus - + - + FMA @@ -617364,7 +617375,7 @@ - + FMA:44320 SCTID:302677006 posteromedial vein of thigh @@ -617372,14 +617383,14 @@ UBERON:0013145 accessory saphenous vein - + - + FMA @@ -617396,8 +617407,8 @@ - - + + Missing definition for term UBERON:0013146. Please replace it using linked reference. EHDAA2:0000185 EMAPA:18631 @@ -617409,11 +617420,11 @@ UBERON:0013146 venous system of brain - + - + @@ -617426,13 +617437,13 @@ - + EHDAA2 - + VHOG-modified @@ -617455,7 +617466,7 @@ - + EHDAA2:0001102 mesencephalic vesicle uberon @@ -617463,14 +617474,14 @@ gives rise to midbrain vesicle which gives rise to cerebral aqueduct early mesencephalic vesicle - + - + EHDAA2 @@ -617486,8 +617497,8 @@ - - + + EHDAA2:0001103 SCTID:361481005 midbrain vesicle @@ -617496,24 +617507,24 @@ develops into cerebral aqueduct early midbrain vesicle - + - + - + EHDAA2 - + EHDAA2 @@ -617529,7 +617540,7 @@ - + EHDAA2:0000101 SCTID:361482003 rhombencephalic vesicle @@ -617538,14 +617549,14 @@ gives rise of 4th ventricle hindbrain vesicle - + - + EHDAA2 @@ -617561,7 +617572,7 @@ - + @@ -617582,7 +617593,7 @@ UBERON:0013150 future brain vesicle - + @@ -617595,7 +617606,7 @@ - + EHDAA2 @@ -617664,7 +617675,7 @@ - + A temporary opening between the developing ventricles of the heart. The ventricles arise as a single cavity is divided by the developing interventricular septum. Before the septum closes completely, the remaining opening between the two ventricles is termed the interventricular foramen. EHDAA2:0004064 Wikipedia:Primary_interventricular_foramen @@ -617675,7 +617686,7 @@ Phenotype notes: In some individuals, the foramen fails to close, leading to an interventricular septal defect known as a patent interventricular foramen interventricular foramen of heart - + @@ -617688,7 +617699,7 @@ - + EHDAA2 @@ -617711,7 +617722,7 @@ - + Small protrusions of the arachnoid mater into vascular sinuses, acting as one-way pressure-sensitive valves. Arachnoid granulations (or arachnoid villi) are small protrusions of the arachnoid (the thin second layer covering the brain) through the dura mater (the thick outer layer). They protrude into the venous sinuses of the brain, and allow cerebrospinal fluid (CSF) to exit the brain, and enter the blood stream. Largest granulations lie along the superior sagittal sinus, a large venous space running from front to back along the centre of the head (on the inside of the skull). They are, however, present along other dural sinuses as well. Smaller granulations are called villi, large calcified ones are referred to as pacchionian bodies[Wikipedia:Arachnoid_granulation]. FMA:83980 @@ -617733,14 +617744,14 @@ UBERON:0013153 arachnoid villus - + - + FMA @@ -617837,9 +617848,9 @@ - - - + + + EHDAA2:0000040 EMAPA:16390 endoderm of maxillary component @@ -617847,34 +617858,34 @@ UBERON:0013154 1st arch maxillary endoderm - + - + - + - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -617893,9 +617904,9 @@ - - - + + + EHDAA2:0000032 EMAPA:16383 ectoderm of mandibular component @@ -617903,15 +617914,15 @@ UBERON:0013155 1st arch mandibular ectoderm - + - + - + @@ -617924,19 +617935,19 @@ - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -617953,9 +617964,9 @@ - - - + + + EHDAA2:0000033 EMAPA:16384 endoderm of mandibular component @@ -617963,34 +617974,34 @@ UBERON:0013156 1st arch mandibular endoderm - + - + - + - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -618006,7 +618017,7 @@ - + EHDAA2:0000046 EMAPA:16395 1st arch maxillary-mandibular groove ectoderm @@ -618015,14 +618026,14 @@ UBERON:0013157 1st arch maxillary-mandibular cleft - + - + EHDAA2 @@ -618186,7 +618197,7 @@ - + @@ -618202,14 +618213,14 @@ UBERON:0013161 left lateral ventricle - + - + FMA @@ -618237,7 +618248,7 @@ - + @@ -618253,14 +618264,14 @@ UBERON:0013162 right lateral ventricle - + - + FMA @@ -618946,14 +618957,14 @@ - + - + @@ -618970,24 +618981,24 @@ phonic lip http://upload.wikimedia.org/wikipedia/commons/a/a5/Delphinschaedel.svg - + - + - + check for sperm whales - + absent in baleen whales @@ -619011,7 +619022,7 @@ - + @@ -619031,14 +619042,14 @@ dorsal bursa http://upload.wikimedia.org/wikipedia/commons/a/a5/Delphinschaedel.svg - + - + check for sperm whales @@ -619183,7 +619194,7 @@ - + A structure consisting of a pair of anterior and posterior dorsal bursae in which a pair of phonic lips are embedded, along with the bursal cartilage and a blowhole ligament. all odontocetes except sperm whales posses two bilaterally placed MLDB complexes, placed just below the floor of the vestibular sac MLDB complex @@ -619191,14 +619202,14 @@ UBERON:0013188 monkey lips dorsal bursa complex - + - + ISBN:0120885522 @@ -619500,7 +619511,7 @@ - + A strand of pelage hair that is crimped and grows in clusters. MESH:D014935 @@ -619512,14 +619523,14 @@ UBERON:0013196 strand of wool - + - + cjm @@ -620212,7 +620223,7 @@ - + @@ -620228,14 +620239,14 @@ UBERON:0013216 udder - + - + 1 @@ -620362,7 +620373,7 @@ - + The parotoid gland (alternatively, paratoid gland) is an external skin gland on the back, neck, and shoulder of toads and some frogs and salamanders. It secretes a milky alkaloid substance to deter predators. The substance produced acts as a neurotoxin. Parotoid glands are sometimes said to be wart-like in appearance, though warts are abnormal growths caused by viral infections while parotoid glands are normal, healthy parts of the animals that bear them. The vague similarity in appearance, however, is the reason behind the mistaken belief that touching a toad causes warts. Wikipedia:Parotoid_gland uberon @@ -620370,14 +620381,14 @@ UBERON:0013219 parotoid gland - + - + Wikipedia @@ -620399,7 +620410,7 @@ - + @@ -620420,14 +620431,14 @@ UBERON:0013220 foramen of Panizza - + - + Wikipedia @@ -621218,12 +621229,12 @@ - + - + A future glans that is part of a male genital tubercle. EMAPA:29252 glans of male genital tubercle @@ -621231,14 +621242,14 @@ UBERON:0013239 future glans penis - + - + EMAPA @@ -621257,12 +621268,12 @@ - + - + A future glans that is part of a female genital tubercle. EMAPA:19170 glans of female genital tubercle @@ -621270,14 +621281,14 @@ UBERON:0013240 future glans clitoris - + - + EMAPA @@ -621293,7 +621304,7 @@ - + The precursor of the urethra. In humans, the urethral groove is a temporary linear indentation on the underside (ventral side) of the male penis during embryonic development. It typically appears around 8 weeks of gestation and becomes closed into a normal male urethra by the 12th week SCTID:361531004 @@ -621305,14 +621316,14 @@ UBERON:0013241 embryonic urethral groove - + - + Wikipedia @@ -621415,16 +621426,16 @@ - - + + - - + + An epithelial tube that develops from a Mullerian duct in a male. Later degenerates. consider separating the duct from the degenerating portion, as in EMAPA EHDAA2:0001052 @@ -621435,24 +621446,24 @@ UBERON:0013247 male paramesonephric duct - + - + - + EHDAA2 - + EHDAA2 @@ -621482,7 +621493,7 @@ - + A small collection of convoluted tubules, situated in front of the lower part of the cord above the head of the epididymis. These tubes are lined with columnar ciliated epithelium, and probably represent the remains of a part of the Wolffian body but are functionless and vestigial. The Wolffian body operates as a kidney (metanephros) in fishes and amphibians, but the corresponding tissue is co-opted to form parts of the male reproductive system in other classes of vertebrate. The paradidymis represents a remnant of an unused, atrophied part of the Wolffian body[WP,modified]. FMA:74055 SCTID:279643005 @@ -621494,14 +621505,14 @@ UBERON:0013248 paradidymis - + - + Wikipedia @@ -621538,7 +621549,7 @@ - + A collection of a few scattered rudimentary tubules child, situated in the broad ligament between the epoophoron and the uterus. FMA:18692 Wikipedia:Paroophoron @@ -621549,7 +621560,7 @@ UBERON:0013249 paroophoron - + @@ -621562,7 +621573,7 @@ - + Wikipedia @@ -621603,7 +621614,7 @@ - + In connection with the fimbriae of the uterine tube, or with the broad ligament close to them, there are frequently one or more small pedunculated vesicles. These are termed the vesicular appendages of the epoophoron. one of the small pedunculated structures attached to the uterine tubes near their fimbriated end; remnants of the mesonephric ducts[http://medical-dictionary.thefreedictionary.com/]. hydatid of Morgagni @@ -621623,7 +621634,7 @@ UBERON:0013250 vesicular appendage of epoophoron - + @@ -621636,7 +621647,7 @@ - + cranial end Wikipedia @@ -621703,7 +621714,7 @@ - + Remnant in a female of the portion of the embryonic mesonephric duct that develops into the ductus deferens in males. FMA:76609 ductus deferens vestige @@ -621713,7 +621724,7 @@ UBERON:0013262 remnnant of ductus deferens - + @@ -621726,7 +621737,7 @@ - + Wikipedia @@ -622147,7 +622158,7 @@ - + @@ -622167,14 +622178,14 @@ UBERON:0013399 blood vessel layer of choroid - + - + FMA @@ -622234,7 +622245,7 @@ - + The asterion is the point on the skull corresponding to the posterior end of the parietomastoid suture. FMA:76625 Wikipedia:Asterion_(anatomy) @@ -622244,7 +622255,7 @@ asterion of skull http://upload.wikimedia.org/wikipedia/commons/5/56/Asterion.PNG - + @@ -622257,7 +622268,7 @@ - + Wikipedia @@ -622279,7 +622290,7 @@ - + @@ -622301,7 +622312,7 @@ bregma http://upload.wikimedia.org/wikipedia/commons/2/24/Kort-lang-skalle.gif - + @@ -622314,7 +622325,7 @@ - + Wikipedia @@ -622347,7 +622358,7 @@ - + @@ -622371,14 +622382,14 @@ cranial cavity http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg - + - + Wikipedia @@ -622426,21 +622437,21 @@ - + The crotaphion refers to two points on the skull at the tips of the greater wing of sphenoid bone. It is near the pterion. Wikipedia:Crotaphion uberon UBERON:0013412 crotaphion - + - + Wikipedia @@ -622462,7 +622473,7 @@ - + The Epicranium is the medical term for the collection of structures covering the cranium. It consists of the muscles, aponeurosis, and skin. TODO - add parts SCTID:362625008 @@ -622471,14 +622482,14 @@ UBERON:0013417 epicranium - + - + Wikipedia @@ -622521,7 +622532,7 @@ - + The infratemporal fossa is an irregularly shaped cavity, situated below and medial to the zygomatic arch. Boundaries defined by: anteriorly, by the infratemporal surface of the maxilla and the ridge which descends from its zygomatic process posteriorly, by the articular tubercle of the temporal and the spinal angularis of the sphenoid superiorly, by the greater wing of the sphenoid below the infratemporal crest, and by the under surface of the temporal squama, containing the foramen ovale, which transmits the mandibular branch of the trigeminal nerve, and the foramen spinosum, which transmits the middle meningeal artery inferiorly, by the medial pterygoid muscle attaching to the mandible medially, by the lateral pterygoid plate laterally, by the ramus of mandible, which contains the mandibular foramen, leading to the mandibular canal through which the inferior alveolar nerve passes. This also contains the lingula, a triangular piece of bone that overlies the mandibular foramen antero-medially. Finally, the mylohyoid groove descends obliquely transmitting the mylohyoid nerve the only motor branch of the anterior division of the trigeminal nerve. FMA:75308 MESH:D000080884 @@ -622535,14 +622546,14 @@ infratemporal fossa http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png - + - + Wikipedia @@ -622584,21 +622595,21 @@ - + The jugal point is the point at the anterior end of the upper border of the zygomatic arch where the masseteric and maxillary edges meet at an angle. Wikipedia:Jugal_point uberon UBERON:0013423 jugal point - + - + Wikipedia @@ -622629,7 +622640,7 @@ - + @@ -622652,14 +622663,14 @@ anatomical point connecting sagittal and lambdoidal sutures http://upload.wikimedia.org/wikipedia/commons/5/50/Gray1193.svg - + - + Wikipedia @@ -622687,7 +622698,7 @@ - + The point of the sagittal suture which is on a level with the parietal foramina. FMA:264774 Wikipedia:Obelion @@ -622695,14 +622706,14 @@ UBERON:0013426 obelion - + - + Wikipedia @@ -622753,7 +622764,7 @@ - + The ophryon is the point in the forehead just above the optic foramen, or eyesocket, and glabella. FMA:284930 Wikipedia:Ophryon @@ -622761,14 +622772,14 @@ UBERON:0013428 ophryon - + - + Wikipedia @@ -622784,7 +622795,7 @@ - + The porion is the point on the human skull located at the upper margin of each ear canal (external auditory meatus, external acoustic meatus). It underlies the tragus. The anatomical landmark has significance in biological anthropology and craniometry. FMA:264711 Wikipedia:Porion @@ -622793,14 +622804,14 @@ porion http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png - + - + Wikipedia @@ -622842,7 +622853,7 @@ - + The pterygomaxillary fissure is a fissure of the human skull. It is vertical, and descends at right angles from the medial end of the inferior orbital fissure; it is a triangular interval, formed by the divergence of the maxilla from the pterygoid process of the sphenoid. It connects the infratemporal with the pterygopalatine fossa, and transmits the terminal part of the maxillary artery. Alveolar branches of the maxillary nerve go from the pterygopalatine fossa to the infratemporal region via this fissure. In older texts, the pterygomaxillary fissure is sometimes called the pterygopalatine fissure. FMA:76627 Wikipedia:Pterygomaxillary_fissure @@ -622851,7 +622862,7 @@ pterygomaxillary fissure http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png - + @@ -622864,7 +622875,7 @@ - + Wikipedia @@ -622985,7 +622996,7 @@ - + The speno-maxillary fossa is a small triangular space situated at the angle of the junction of the spheno-maxillary and pterygo-maxillary fissures, and placed beneath the apex of the orbit. It is formed above by the under surface of the body of the sphenoid and by the orbital process of the palate bone. NCIT:C33584 UMLS:C1519450 @@ -622994,14 +623005,14 @@ UBERON:0013454 spheno-maxillary fossa - + - + Wikipedia @@ -623038,7 +623049,7 @@ - + @@ -623061,14 +623072,14 @@ spheno-petrosal fissure http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png - + - + Wikipedia @@ -623096,7 +623107,7 @@ - + The point where the upper temporal line cuts the coronal suture is named the stephanion. FMA:264723 Wikipedia:Stephanion @@ -623105,14 +623116,14 @@ stephanion https://upload.wikimedia.org/wikipedia/commons/a/ae/Gray188-Coronal_suture.png - + - + Wikipedia @@ -623128,7 +623139,7 @@ - + The suprainiac fossa is an elliptic depression on the occiput above the superior nuchal line, or inion. UBERON:0013470 @@ -623137,14 +623148,14 @@ UBERON:0013460 suprainiac fossa - + - + Wikipedia @@ -623213,7 +623224,7 @@ - + The temporal fossa is a shallow depression on the side of the skull bounded by the temporal lines and terminating below the level of the zygomatic arch. FMA:75307 NCIT:C33742 @@ -623225,14 +623236,14 @@ temporal fossa http://upload.wikimedia.org/wikipedia/commons/b/bd/Fossatemporalis.PNG - + - + Wikipedia @@ -623299,7 +623310,7 @@ - + Near the middle of the occipital squama is the external occipital protuberance, and extending lateralward from it on either side is the superior nuchal line, and above this the faintly marked highest nuchal line. It is less pronounced in females. The inion is the highest point of the external occipital protuberance. a projection on the external surface of the squamous part of the occipital bone in the midline. The external occipital protuberance is a bony prominence occuring on the large area ventral to the external sagittal crest. It functions as the attachment site for the funicular part of the nuchal ligament[MURDOCH:734]. FMA:75752 @@ -623311,14 +623322,14 @@ external occipital protuberance https://github.com/obophenotype/uberon/issues/166 - + - + FMA @@ -623730,7 +623741,7 @@ - + An intestinal crypt that is located in the ileum. EMAPA:37839 FMA:269061 @@ -623742,14 +623753,14 @@ crypt of Lieberkuhn of ileum - + - + FMA @@ -623782,7 +623793,7 @@ - + An intestinal crypt that is located in the duodenum. EMAPA:37838 FMA:269063 @@ -623793,14 +623804,14 @@ crypt of Lieberkuhn of duodenum - + - + FMA @@ -623833,7 +623844,7 @@ - + An intestinal crypt that is located in the jejunum. EMAPA:37840 FMA:269065 @@ -623844,14 +623855,14 @@ crypt of Lieberkuhn of jejunum - + - + FMA @@ -624037,7 +624048,7 @@ - + @@ -624063,14 +624074,14 @@ It is considered by some to be a part of the Panniculus adiposus, and not true fascia[WP] superficial cervical fascia - + - + contested Wikipedia @@ -624489,21 +624500,21 @@ - + EMAPA:16662 uberon glossopharyngeal-vagus preganglion complex UBERON:0013499 glossopharyngeal-vagus IX-X preganglion complex - + - + cjm @@ -625372,14 +625383,14 @@ - + - + One of two lateral tracts connecting a uterus to a common median tract separated from the median vagina via ureters which prevent their fusion. Found in marsupials. https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern lateral vagina @@ -625388,24 +625399,24 @@ UBERON:0013523 lateral vaginal canal - + - + - + cjm - + the lateral vaginae serve as transport for the sperm @@ -625449,7 +625460,7 @@ - + @@ -625472,14 +625483,14 @@ UBERON:0013524 median vaginal canal - + - + cjm @@ -625506,7 +625517,7 @@ - + @@ -625523,14 +625534,14 @@ UBERON:0013525 stomach lumen - + - + FMA @@ -625576,8 +625587,8 @@ - - + + @@ -625592,11 +625603,11 @@ UBERON:0013526 otocyst lumen - + - + @@ -625609,13 +625620,13 @@ - + EHDAA2 - + EHDAA2 @@ -625804,7 +625815,7 @@ - + A segmentation of the cerebral cortex on the basis of cytoarchitecture as described in Brodmann-1905, Brodmann-1909 and Brodmann-10. Maps for several species were presented. NeuroNames includes only areas in the human and in Old World monkeys. Of the latter, Brodmann studied representatives of several species including guenons (one Cercopithecus mona, one Cercocebus torquatus, and one Cercopithecus otherwise unspecified), which are all closely related African species, and one macaque (Macaca mulatta) an Asian species (Brodmann-1905). The legend to the summary map in Brodmann-1909 ascribes the areas simply to Cercopithecus. Brodmann referenced the areas by name and number. The same area number in humans and monkeys did not necessarily refer to topologically or cytoarchitecturally homologous structures. In NeuroNames the standard term for human areas consists of the English translation of Brodmann's Latin name followed by the number he assigned, e.g., agranular frontal area 6; the standard terms for monkey areas are in the format: area 6 of Brodmann-1909. He mapped a portion of areas limited to the banks of sulci, e.g., area 3 of Brodmann-1909 (Brodmann-1909) onto the adjacent, visible surface. This accounts for the fact that some areas appear larger on his surface map than on maps of other authors, e.g., area 3 of Vogts-1919. (Adapted from NeuroNames). BAMS:VTM BIRNLEX:1731 @@ -625821,14 +625832,14 @@ UBERON:0013529 Brodmann area - + - + FMA Wikipedia @@ -625880,7 +625891,7 @@ - + The retrosplenial region is a brain area and part of the cingulate cortex. It is defined by Brodmann area 26, Brodmann area 29 and the Brodmann area 30. BAMS:RSP BTO:0003977 @@ -625897,14 +625908,14 @@ retrosplenial region - + - + BTO @@ -626060,7 +626071,7 @@ - + The term area 4 of Brodmann-1909 refers to a cytoarchitecturally defined portion of the frontal lobe of the guenon. It is located predominantly in the precentral gyrus. Brodmann-1909 regarded it as topographically and cytoarchitecturally homologous to the human gigantopyramidal area 4 and noted that it occupies a much greater fraction of the frontal lobe in the monkey than in the human. Distinctive features (Brodmann-1905): the cortex is unusually thick; the layers are not distinct; the cells are relatively sparsely distributed; giant pyramidal (Betz) cells are present in the internal pyramidal layer (V); lack of an internal granular layer (IV) such that the boundary between the external pyramidal layer (III) and the internal pyramidal layer (V) is indistinct; lack of a distinct external granular layer (II); a gradual transition from the multiform layer (VI) to the subcortical white matter. B09-4 BIRNLEX:1735 @@ -626084,7 +626095,7 @@ Brodmann (1909) area 4 https://github.com/obophenotype/uberon/issues/515 - + @@ -626097,7 +626108,7 @@ - + https://github.com/obophenotype/uberon/issues/515 @@ -626460,7 +626471,7 @@ - + B09-9 BIRNLEX:1740 FMA:68606 @@ -626482,7 +626493,7 @@ UBERON:0013540 Brodmann (1909) area 9 - + @@ -626495,7 +626506,7 @@ - + https://orcid.org/0000-0003-3308-6245 @@ -626952,7 +626963,7 @@ - + Brodmann Area 14 is one of Brodmann's subdivisions of the cerebral cortex in the brain. It was defined by Brodmann in the guenon monkey. No equivalent structure exists in humans. B09-14 BIRNLEX:1745 @@ -626970,7 +626981,7 @@ UBERON:0013545 Brodmann (1909) area 14 - + @@ -626983,7 +626994,7 @@ - + vmPFC WP @@ -627264,7 +627275,7 @@ - + Brodmann area 19, or BA19, is part of the occipital lobe cortex in the human brain. Along with area 18, it comprises the extrastriate (or peristriate) cortex. In normally-sighted humans, extrastriate cortex is a visual association area, with feature-extracting, shape recognition, attentional, and multimodal integrating functions. This area is also known as peristriate area 19, and it refers to a subdivision of the cytoarchitecturally defined occipital region of cerebral cortex. In the human it is located in parts of the lingual gyrus, the cuneus, the lateral occipital gyrus (H) and the superior occipital gyrus (H) of the occipital lobe where it is bounded approximately by the parieto-occipital sulcus. Cytoarchitecturally it is bounded on one side by the parastriate area 18 which it surrounds. Rostrally it is bounded by the angular area 39 (H) and the occipitotemporal area 37 (H) (Brodmann-1909). B09-19 BIRNLEX:1750 @@ -627288,7 +627299,7 @@ UBERON:0013550 Brodmann (1909) area 19 - + @@ -627301,7 +627312,7 @@ - + WP @@ -628051,7 +628062,7 @@ - + Area 27 of Brodmann-1909 is a cytoarchitecturally defined cortical area that is a rostral part of the parahippocampal gyrus of the guenon (Brodmann-1909). It is commonly regarded as a synonym of presubiculum (Crosby-62). [WP,unvetted]. B09-27 BIRNLEX:1758 @@ -628075,7 +628086,7 @@ UBERON:0013558 Brodmann (1909) area 27 - + @@ -628088,7 +628099,7 @@ - + consider merging many sources treat as synonymous @@ -628190,7 +628201,7 @@ - + B09-28 BIRNLEX:1759 FMA:68625 @@ -628213,7 +628224,7 @@ Brodmann (1909) area 28 http://upload.wikimedia.org/wikipedia/commons/7/76/Brodmann_Cytoarchitectonics_28.png - + @@ -628226,7 +628237,7 @@ - + consider merging many sources treat as synonymous @@ -628646,7 +628657,7 @@ - + Brodmann area 40, or BA40, is part of the parietal cortex in the human brain. The inferior part of BA40 is in the area of the supramarginal gyrus, which lies at the posterior end of the lateral fissure, in the inferior lateral part of the parietal lobe. It is bounded approximately by the intraparietal sulcus, the inferior postcentral sulcus, the posterior subcentral sulcus and the lateral sulcus. Cytoarchitecturally it is bounded caudally by the angular area 39 (H), rostrally and dorsally by the caudal postcentral area 2, and ventrally by the subcentral area 43 and the superior temporal area 22 (Brodmann-1909). Cytoarchitectonically defined subregions of rostral BA40/the supramarginal gyrus are PF, PFcm, PFm, PFop, and PFt. Area PF is the homologue to macaque area PF, part of the mirror neuron system, and active in humans during imitation. The supramarginal gyrus part of Brodmann area 40 is the region in the inferior parietal lobe that is involved in reading both in regards to meaning and phonology. [WP,unvetted]. B09-40 BIRNLEX:1773 @@ -628666,7 +628677,7 @@ UBERON:0013573 Brodmann (1909) area 40 - + @@ -628679,7 +628690,7 @@ - + consider merging many sources treat as synonymous @@ -630220,7 +630231,7 @@ - + Ossicle that develops within bands of dense, regular connective tissue (e.g., tendons and ligaments). Sesamoids are generally located proximate to a bony prominence, over which the dense regular connective tissue wraps, and/or a joint or articulation. VSAO:0000137 sesamoid @@ -630229,7 +630240,7 @@ Sesamoids are often endochondral replacement elements and in addition to bone tissue, may also be composed of articular cartilage, fibrocartilage, hyaline cartilage, and calcified cartilage. sesamoid element - + @@ -630242,7 +630253,7 @@ - + VSAO @@ -630417,7 +630428,7 @@ - + An epithelium that is part of a intestinal villus. FMA:63587 intestinal villus epithelium @@ -630427,14 +630438,14 @@ UBERON:0013636 epithelium of intestinal villus - + - + FMA @@ -630769,7 +630780,7 @@ - + The buccal nerve (also called the long buccal nerve) is a nerve in the face. It is a branch of the mandibular nerve (which is itself a branch of the trigeminal nerve) and transmits sensory information from skin over the buccal membrane (in general, the cheek) and from the second and third molar teeth. BAMS:bucn FMA:53066 @@ -630783,14 +630794,14 @@ UBERON:0013646 buccal nerve - + - + FMA @@ -630847,7 +630858,7 @@ - + A nerve that innervates the lateral pterygoid muscle. The nerve to the Pterygoideus externus frequently arises in conjunction with the buccinator nerve, but it may be given off separately from the anterior division of the mandibular nerve. It enters the deep surface of the muscle. FMA:53107 @@ -630861,14 +630872,14 @@ UBERON:0013647 lateral pterygoid nerve - + - + FMA @@ -630931,7 +630942,7 @@ - + The masseteric artery is small and passes laterally through the mandibular notch to the deep surface of the masseter muscle, which it supplies. It anastomoses with the masseteric branches of the external maxillary artery and with the transverse facial artery. FMA:49739 @@ -630945,14 +630956,14 @@ masseteric artery - + - + FMA @@ -631056,7 +631067,7 @@ - + @@ -631077,14 +631088,14 @@ UBERON:0013653 velar skeleton - + - + in hagfishes it is difficult to separate neurocranium from visceral skeleton @@ -631245,8 +631256,8 @@ - - + + A bulbous ridge of highly vascularized tissue that runs along the center of the hard palate, expanding cranially to form two large lobes that terminate under the tip of the rostral palate, with another enlarged node at the caudal terminus. palatal organ palatal corpus cavernosum maxillaris @@ -631255,24 +631266,24 @@ UBERON:0013658 corpus cavernosum maxillaris - + - + - + PMID:23450839 - + PMID:23450839 @@ -632156,7 +632167,7 @@ - + @@ -632191,14 +632202,14 @@ buttock - + - + FMA @@ -633206,8 +633217,8 @@ - - + + @@ -633244,24 +633255,24 @@ UBERON:0013715 ilio-marsupialis muscle - + - + - + DOI:10.1046/j.1469-7580.2002.00087.x - + PMC1570914 @@ -633797,7 +633808,7 @@ - + @@ -633823,14 +633834,14 @@ UBERON:0013731 basilar papilla - + - + MA-abduced @@ -633869,21 +633880,21 @@ - + A tube leading from the external naris to the nasal cavity. AAO:0000984 uberon UBERON:0013732 vestibule of nasal cavity - + - + AAO @@ -633943,7 +633954,7 @@ - + Nucleus of the medial ventral tegmental area, originally identified in the rat but also in cat, monkey and human, comprising an average of 7% volume of the VTA across the different species, with the largest being present in the cat. Brain Info does not list the linear nuclei as part of the ventral tegmental area but as a co-area of the midbrain tegmentum. Am assuming the rostral linear nucleus of the raphe is synonymous, but needs further review. (NIF) BAMS:LR @@ -633960,14 +633971,14 @@ UBERON:0013734 rostral linear nucleus - + - + NIFSTD @@ -634035,7 +634046,7 @@ - + PN DHBA:12265 FMA:77497 @@ -634045,7 +634056,7 @@ UBERON:0013737 paranigral nucleus - + @@ -634058,7 +634069,7 @@ - + PMID:21653852 @@ -634077,7 +634088,7 @@ - + Nucleus identified in the medial ventral tegmental area that borders the red nucleus and superior cerebellar peduncle dorsally, the medial lemniscus laterally, the subtantia nigra pars compacta and paranigral nucleus ventrally and the rostral linear nucleus and interfascicular nucleus medially. Generally, the largest nucleus in the ventral tegmental area, occupying an average of 50% of the total volume as measured in rat, cat, monkey and human. PBP BAMS:PBP @@ -634091,14 +634102,14 @@ UBERON:0013738 parabrachial pigmental nucleus - + - + NIF PMID:21653852 @@ -634374,7 +634385,7 @@ - + Endochondral element that is ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton. Median ventral cartilage or bony element at the ventral point of a branchial arch, behind the tongue[http://www.fishbase.org/Glossary/Glossary.php?q=basibranchial&sc=is]. basibranchial @@ -634385,14 +634396,14 @@ UBERON:0013746 basibranchial element - + - + ZFA @@ -634477,7 +634488,7 @@ - + A metaphysis that is part of a ulna. FMA:33767 metaphysis of ulna @@ -634486,14 +634497,14 @@ ulnar metaphysis - + - + FMA @@ -635901,7 +635912,7 @@ - + @@ -635918,14 +635929,14 @@ skin of palm of manus - + - + FMA @@ -636125,7 +636136,7 @@ - + Most superficial of 3 cytoarchitecturally defined layers of the piriform cortex, characterized by few neuronal cell bodies. It has been divided into a superficial part and a deep part. NLXANAT:091003 layer 1 of piriform cortex @@ -636141,14 +636152,14 @@ UBERON:0014277 piriform cortex layer 1 - + - + NIFSTD @@ -636219,7 +636230,7 @@ - + @@ -636241,14 +636252,14 @@ UBERON:0014280 piriform cortex layer 2 - + - + NIFSTD @@ -636307,7 +636318,7 @@ - + @@ -636324,14 +636335,14 @@ UBERON:0014283 piriform cortex layer 3 - + - + NIFSTD @@ -636365,7 +636376,7 @@ - + An elongated nucleus consisting largely of multipolar spiny cells lying deep to the piriform cortex. According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, (Ed.), Academic Press, San Diego), it is part of the claustrum. @@ -636385,14 +636396,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014284 endopiriform nucleus - + - + NIFSTD @@ -636445,21 +636456,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NLXANAT:100307 dorsal cap of kooy uberon UBERON:0014286 dorsal cap of Kooy - + - + NIFSTD @@ -636475,7 +636486,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Regional part of the inferior olivary complex. BAMS:IOma NLXANAT:100309 @@ -636486,14 +636497,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014287 medial accessory olive - + - + NIFSTD @@ -636541,7 +636552,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A group of cortical areas related by direct or indirect connectivity to the striate area 17 and functionally involved primarily in vision. They include the parastriate area 18, the peristriate area 19 and adjacent areas in the parietal lobe and temporal lobe (Adapted from BrainInfo and Zilles-1990). BTO:0004704 @@ -636558,7 +636569,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014370 extrastriate cortex - + @@ -636571,7 +636582,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + WP @@ -636634,7 +636645,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -636652,14 +636663,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( paired anteriolateral division of the embryonic prosencephalon plus the lamina terminalis from which the olfactory lobes, cerebral cortex, and subcortical nuclei are derived[MP] future telencephalon - + - + definitional @@ -636730,7 +636741,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Embryoid bodies (EBs) are three-dimensional aggregates of pluripotent stem cells. Embryoid bodies are structures resembling embryos, occurring in several types of germ cell tumors[BTO]. BTO:0001718 @@ -636744,7 +636755,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( EDITOR_NOTE in future this class may be ceded to another ontology if it falls outside the scope of in-vivo, non-pathological biology embryoid body - + @@ -636757,7 +636768,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Wikipedia @@ -637740,7 +637751,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A short projection from the base of the manubrium of the malleus, attached firmly to the drum membrane. FMA:52770 MA:0002994 @@ -637756,14 +637767,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014397 lateral process of malleus - + - + FMA @@ -638260,8 +638271,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + @@ -638279,25 +638290,25 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014410 fibularis quartus - + - + - + may also originate from the longus PMID:14653594 - + PMID:14653594 @@ -638560,7 +638571,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -638583,14 +638594,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014440 ischiopubic ramus - + - + FMA @@ -638912,7 +638923,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A neural nucleus of the pretectal area (between dorsal thalamus and optic tectum) that receives afferents primarily from the retina and the optic tectum and are involved in modulating motor behavior in response to visual input. @@ -638939,14 +638950,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( pretectal nucleus - + - + MP @@ -639426,7 +639437,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + One of two bilaterally symmetrical holes (fenestrae) in the temporal bone. @@ -639435,14 +639446,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014459 temporal fenestra - + - + not present in earliest amniotes Wikipedia @@ -639886,7 +639897,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Fissure between cerebellar lobules I and II. compare with precentral sulcus BAMS:pce @@ -639908,14 +639919,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014473 precentral fissure of cerebellum - + - + NIFSTD @@ -640177,8 +640188,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + @@ -640200,24 +640211,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014479 elephant trunk - + - + - + Wikipedia - + Wikipedia @@ -641636,7 +641647,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + ADMG BAMS:MGad BIRNLEX:1600 @@ -641649,14 +641660,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014521 anterodorsal nucleus of medial geniculate body - + - + NIFSTD @@ -642451,8 +642462,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + Is located ventral to the basal nucleus and has three subdivisions: the periamygdaloid cortex, the medial division, and the sulcal division. BAMS:PAC MESH:D066277 @@ -642464,24 +642475,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014537 periamygdaloid cortex - + - + - + NIFSTD - + NIFSTD @@ -643067,7 +643078,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + CA1 part of stratum pyramidale hippocampi. BIRNLEX:4110 DMBA:16133 @@ -643089,14 +643100,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014548 pyramidal layer of CA1 - + - + NN-text @@ -643178,7 +643189,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Part of pyramidal cell layer in area CA2, lying superficial to the CA2 stratum oriens, and deep to the stratum radiatum of CA2, continuous with the pyramidal cell layers of CA1 and CA3. BIRNLEX:4111 EMAPA:36480 @@ -643195,14 +643206,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014549 pyramidal layer of CA2 - + - + NN-text @@ -643266,7 +643277,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A layer of hippocampal field that is part of a hippocampus pyramidal layer and is part of a CA3 field of hippocampus. BIRNLEX:4112 EMAPA:36448 @@ -643283,14 +643294,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014550 pyramidal layer of CA3 - + - + NN-text @@ -644070,7 +644081,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Part of dorsal tegmental nucleus characterized by round, small cells that are lightly stained in Nissl preparations. According to Hayakawa and Zuo (1983), the TDD cannot be clearly identified in the tree shrew or in human NLXANAT:20090407 @@ -644080,14 +644091,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014568 dorsal tegmental nucleus pars dorsalis - + - + NIFSTD @@ -644115,7 +644126,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Cytoarchitectural part of the dorsal tegmental nucleus based on cell size. The pars ventralis is characterized by medium sized oval or triangular cells that stain darkly in NIssl stains. According to Hayakawa and Zuo (1983), the TDV cannot be clearly identified in the tree shrew or in human NLXANAT:20090408 @@ -644127,14 +644138,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014569 dorsal tegmental nucleus pars ventralis - + - + NIFSTD @@ -644512,7 +644523,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + TMd BAMS:TMd BIRNLEX:1290 @@ -644524,14 +644535,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014593 tuberomammillary nucleus dorsal part - + - + NIFSTD @@ -644562,7 +644573,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + TMv BAMS:TMv BIRNLEX:1294 @@ -644572,14 +644583,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014594 tuberomammillary nucleus ventral part - + - + NIFSTD @@ -645200,7 +645211,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The ventral portion of the dorsal striatum, linking the caudate nucleus and the putamen anteriorly (adapted from Wikipedia). BAMS:FS BAMS:FStr @@ -645216,14 +645227,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014605 fundus striati - + - + ABA @@ -646562,7 +646573,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:2676 FMA:77038 @@ -646576,14 +646587,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014630 ventral gray commissure of spinal cord - + - + FMA @@ -646630,7 +646641,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The part of the gray commissure in the spinal central gray posterior to the central canal of the spinal cord. It is identified by Nissl stain and found in the human ( Crosby-1962 ) and the rat ( Swanson-2004 ). BIRNLEX:2677 @@ -646647,14 +646658,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014631 dorsal gray commissure of spinal cord - + - + FMA @@ -648796,7 +648807,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The deep auricular artery often arises in common with the anterior tympanic artery. It ascends in the substance of the parotid gland, behind the temporomandibular articulation, pierces the cartilaginous or bony wall of the external acoustic meatus, and supplies its cuticular lining and the outer surface of the tympanic membrane. It gives a branch to the temporomandibular joint. FMA:49689 @@ -648807,14 +648818,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( deep auricular artery - + - + FMA @@ -648830,7 +648841,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The anterior choroidal artery originates from the internal carotid artery, though it also rarely arises from the middle cerebral artery. @@ -648844,14 +648855,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( anterior choroidal artery - + - + FMA @@ -648882,7 +648893,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:50657 NCIT:C33352 SCTID:369342007 @@ -648890,14 +648901,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014697 posterior choroidal artery - + - + FMA @@ -649044,7 +649055,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An epithelium that is part of a frontonasal prominence. EHDAA2:0004108 EMAPA:32918 @@ -649052,7 +649063,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014702 frontonasal process epithelium - + @@ -649065,7 +649076,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2 @@ -649134,7 +649145,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -649149,14 +649160,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014704 pleuroperitoneal canal lumen - + - + EHDAA2 @@ -649198,7 +649209,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An epithelium that is part of a median lingual swelling. EHDAA2:0001085 EMAPA:17188 @@ -649207,7 +649218,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014705 median lingual swelling epithelium - + @@ -649220,7 +649231,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2 @@ -649243,7 +649254,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2:0001147 EMAPA:17646 metanephros primitive collecting ducts @@ -649252,7 +649263,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014706 primitive renal collecting duct system - + @@ -649265,7 +649276,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2 @@ -649446,20 +649457,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An epithelium that is part of a carapacial ridge. uberon UBERON:0014712 carapacial ridge ectoderm - + - + cjm @@ -649952,7 +649963,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -649968,14 +649979,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Examples: compound eye; Johnston's organ. compound cell cluster organ - + - + 2 @@ -650816,7 +650827,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Brainstem tract formed by the central processes of first-order, trigeminal ganglion neurons that extends from the caudal medulla to the midpons. This tract conveys nociceptive and thermal information from the face to second-order neurons in the spinal nucleus of the trigeminal complex. BAMS:sp5 BTO:0003701 @@ -650842,14 +650853,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014761 spinal trigeminal tract - + - + BTO @@ -651128,8 +651139,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + @@ -651158,24 +651169,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Classification notes: May be considered an external sphincter[PMID:8224664] crus of diaphragm - + - + - + PMID:23586979 - + PMID:23586979 @@ -651511,7 +651522,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The lateral palpebral arteries are small arteries which supply the eyelid. @@ -651525,14 +651536,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( lateral palpebral artery - + - + FMA @@ -651566,7 +651577,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The medial palpebral arteries (internal palpebral arteries) are arteries of the head. They are two in number, superior and inferior, arise from the ophthalmic, opposite the pulley of the Obliquus superior. FMA:50012 @@ -651583,14 +651594,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( medial palpebral artery - + - + FMA @@ -651927,9 +651938,9 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - - + + + EHDAA2:0000113 EMAPA:28547 uberon @@ -651938,15 +651949,15 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( remnant of allantois in embryo allantois of embryonic urinary system - + - + - + @@ -651959,19 +651970,19 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -652100,9 +652111,9 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - - + + + Extraembryonic part of the vein passing through the umbilical cord to the fetus and returning the purified and nutrient blood from the placenta. VHOG:0000015 extraembryonic umbilical vein @@ -652110,34 +652121,34 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014786 extraembryonic umbilical vein - + - + - + - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -652571,20 +652582,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Any muscle organ that is part of a pectoral appendage (forelimb or pectoral fin). uberon UBERON:0014794 pectoral appendage muscle - + - + prolog @@ -652611,20 +652622,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Any muscle organ that is part of a pelvic appendage (hindlimb or pelvic fin). uberon UBERON:0014795 pelvic appendage muscle - + - + prolog @@ -652755,32 +652766,32 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + A jaw muscle that arises from trunk somites and is innervated by spinal nerves. uberon UBERON:0014797 hypobranchial group muscle - + - + - + ISBN:0073040584 - + ISBN:0073040584 @@ -653171,31 +653182,31 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + A dorsal muscle of lower tetrapods. uberon UBERON:0014842 puboischiofemoralis muscle - + - + - + ISBN:0073040584 - + ISBN:0073040584 @@ -653231,8 +653242,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + @@ -653259,24 +653270,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( vastus intermedius - + - + - + ISBN:0073040584 - + dbpedia @@ -653341,7 +653352,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:46900 SCTID:245175008 common tendon of quadriceps femoris @@ -653354,7 +653365,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014848 tendon of quadriceps femoris - + @@ -653367,7 +653378,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -653698,7 +653709,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Leaflet of mitral valve which is attached to the posterior head of the lateral papillary muscle of left ventricle through the chorda tendinea of the left ventricle. FMA:7243 SCTID:244355000 @@ -653714,7 +653725,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014855 posterior leaflet of mitral valve - + @@ -653727,7 +653738,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -655467,21 +655478,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + In those cases in which the interilial region is broadly expanded and the pubis is extremely reduced, the anterior margin of the ischium forms an expanded area. AAO:0000881 uberon UBERON:0014898 lamina terminalis of ischium - + - + AAO @@ -655674,7 +655685,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + One of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites. Blood vessels that connect the dorsal aorta or the posterior cardinal vein and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. At early stages these don't have venous or arterial markers[ZFA:0001285, ZFIN:ZDB-PUB-030908-4]. EFO:0003664 @@ -655692,7 +655703,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( intersomitic vessel - + @@ -655705,7 +655716,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + ZFA @@ -655958,7 +655969,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The bend in the facial nerve at the lateral end of the internal acoustic meatus. first genu DHBA:12738 @@ -655982,7 +655993,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( genu of facial nerve - + @@ -655995,7 +656006,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -656529,20 +656540,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + these layers primarily refer to the mammalian future neocortex uberon UBERON:0014950 layer of developing cerebral cortex - + - + EMAPA @@ -660023,7 +660034,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -660036,7 +660047,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015062 bone condensation - + @@ -660049,7 +660060,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + AEO @@ -660077,21 +660088,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An endochondral element that is part of a autopod region. uberon UBERON:0015063 autopod endochondral element - + - + cjm @@ -661488,7 +661499,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -661508,7 +661519,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( In the developed brain, the lamina terminalis remains as the thin rostral wall of the third ventricle, stretching from the bases of the major cerebral commissures (the anterior commissure, the commissure of the fornix, and the rostrum of the corpus callosum) to the dorsal surface of the optic chiasm[MGI:anna] lamina terminalis of cerebral hemisphere - + @@ -661521,7 +661532,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -661923,7 +661934,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + consider merging into myocardial compact layer FMA:83105 perimysial connective tissue of subepicardium @@ -661932,14 +661943,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015128 subepicardial layer of epicardium - + - + FMA @@ -662241,7 +662252,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -662257,14 +662268,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( infundibulum of gallbladder - + - + FMA @@ -662703,7 +662714,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A gland that is typically found in or near the orbital region, in or around either the medial or lateral canthi, and is typically associated with secretions onto the eyeball or associated ducts. Includes the Harderian, nictitans and lacrimal glands. the only orbital gland found in anuran amphibians is either the Harderian or the lacrimal; if it is a lacrimal, then a progressive lateral migration of the lacrimal glands must occur through the amniotes[PMID:7559104] the only orbital gland found in anuran amphibians is the Harderian[PMID:8843648] @@ -662713,14 +662724,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015152 gland of ocular region - + - + inferred @@ -662799,7 +662810,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -662817,14 +662828,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015155 conjunctival space - + - + FMA @@ -662885,7 +662896,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The middle temporal artery occasionally gives off a zygomatico-orbital branch, which runs along the upper border of the zygomatic arch, between the two layers of the temporal fascia, to the lateral angle of the orbit. This branch, which may arise directly from the superficial temporal artery, supplies the Orbicularis oculi, and anastomoses with the lacrimal and palpebral branches of the ophthalmic artery. FMA:49663 @@ -662898,14 +662909,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( zygomatico-orbital artery - + - + FMA @@ -662933,7 +662944,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -662946,14 +662957,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The blood supply to the (Harderian) gland has been reported in greatest detail in the sparrow Passer domesticus (Slonaker, 1918), where it is derived through the ophthalmotemporal branch of the external ophthalmic artery http://www.ncbi.nlm.nih.gov/pubmed/7559104 ophthalmotemporal branch of external ophthalmic artery - + - + PMID:7559104 @@ -663043,7 +663054,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -663074,14 +663085,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015161 inferior branch of oculomotor nerve - + - + AAO Wikipedia @@ -663659,7 +663670,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -663690,14 +663701,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( helicine artery of penis - + - + FMA @@ -664308,7 +664319,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:18593 FMA:53146 SCTID:310212002 @@ -664316,14 +664327,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015216 nasal meatus - + - + EMAPA @@ -664645,7 +664656,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The caudal, pulsatile region of the dorsal vessel of the arthropod circulatory system. FBbt has two terms that are both narrower than this, for adult heart, and embryonic/larval heart. FBbt:00003154 @@ -664657,14 +664668,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015230 dorsal vessel heart - + - + FBbt @@ -664878,7 +664889,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A cluster in the epithalamus that consists of the pineal body and any associated structures, such as the parapineal gland or the parietal organ. The complex is poorly developed in mammals. TAO:0001359 @@ -664887,14 +664898,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015238 pineal complex - + - + ZFA @@ -664911,7 +664922,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An unpaired left-sided accessory organ which plays a role in establishing lateral brain left right asymmetry[ZFA:0001360, ZFIN:ZDB-PUB-030206-1]. In lampreys and apparently in some fossil fish, the parapineal body and the pineal body (epiphysis) are a bilateral pair of structures rather than being located in series, one in front of the other. A pair of visual structures may have been the ancestral condition of this pineal complex (Weichert, 1970, p.622). The parapineal organs of lampreys, tadpoles, and lizards possess cells similar to rods and cones. Frogs possess a brow spot or frontal organ where ancestral pineal eye might have been (Weichert, 1970, p.622) @@ -664922,7 +664933,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015241 parapineal organ - + @@ -664935,7 +664946,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + ZFA @@ -664962,7 +664973,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -664985,7 +664996,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015243 lower part of vagina - + @@ -664998,7 +665009,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA @@ -665038,7 +665049,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -665056,14 +665067,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015244 accessory olfactory bulb granule cell layer - + - + MA @@ -665092,14 +665103,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + A spatially segregated cluster of sensory cells in the nasal cavity. EMAPA:35764 MA:0001327 @@ -665107,24 +665118,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015245 septal olfactory organ - + - + - + NCBIBook:NBK55971 - + MA @@ -665206,7 +665217,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -665230,14 +665241,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015247 bifurcation of trachea - + - + MA @@ -665310,8 +665321,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + EMAPA:37610 MA:0003019 uberon @@ -665319,24 +665330,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015250 inferior olivary commissure - + - + - + MA - + MA-modified @@ -665519,7 +665530,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A basement membrane of epithelium that is part of a respiratory system. EMAPA:37570 MA:0001815 @@ -665527,14 +665538,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015329 respiratory system basement membrane - + - + MA @@ -665743,8 +665754,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The segment of either hepatic duct located in the hilum of the liver. EMAPA:37599 MA:0002665 @@ -665755,11 +665766,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015423 hilar portion of hepatic duct - + - + @@ -665772,13 +665783,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MA - + located in or on the hilum, but not part of the liver @@ -665859,7 +665870,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -665876,14 +665887,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015432 accessory olfactory bulb mitral cell layer - + - + MA @@ -665899,7 +665910,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A thin layer of fibrous tissue capable of stretching and contracting. It is part of the tunica media of the blood vessels. in FMA this is classified as an acellular membrane, which is inconsistent with our classification as a tissue layer. Requires further investigation EMAPA:36302 @@ -665913,7 +665924,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015433 blood vessel external elastic membrane - + @@ -665926,7 +665937,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MA @@ -666515,7 +666526,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The hepatic artery proper (also proper hepatic artery), arises from the common hepatic artery and runs alongside the portal vein and the common bile duct to form the portal triad. The hepatic artery proper gives off a small supraduodenal artery to the duodenal bulb. Then the right gastric artery comes off and runs to the left along the lesser curvature of the stomach to meet the left gastric artery, which is a branch of the celiac trunk. It subsequently gives off the cystic artery, which feeds the gallbladder, before bifurcating into the right and left hepatic arteries. Of note, the right and left hepatic arteries may demonstrate variant anatomy. A replaced right hepatic artery may arise from the superior mesenteric artery (SMA) and a replaced left hepatic artery may arise from the left gastric artery. EMAPA:37217 @@ -666530,7 +666541,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( proper hepatic artery - + @@ -666543,7 +666554,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -666580,13 +666591,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + @@ -666606,14 +666617,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( left hepatic artery - + - + FMA @@ -666658,13 +666669,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + @@ -666684,14 +666695,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( right hepatic artery - + - + FMA @@ -666852,7 +666863,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The sural nerve (short saphenous nerve), formed by the junction of the medial sural cutaneous with the peroneal anastomotic branch of the lateral sural cutaneous nerve, passes downward near the lateral margin of the tendo calcaneus, lying close to the small saphenous vein, to the interval between the lateral malleolus and the calcaneus. It runs forward below the lateral malleolus, and is continued as the lateral dorsal cutaneous nerve along the lateral side of the foot and little toe (via a dorsal digital nerve), communicating on the dorsum of the foot with the intermediate dorsal cutaneous nerve, a branch of the superficial peroneal. In the leg, its branches communicate with those of the posterior femoral cutaneous. sural EMAPA:37757 @@ -666868,14 +666879,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015488 sural nerve - + - + FMA @@ -668134,8 +668145,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + Thin layer of cortex lying on the dorsal surface of the corpus callosum. It has been debated whether it is more related to the hippocampus or the olfactory bulb (Shipley et al., Olfactory System In Paxinos The Rat Nervous System, 2nd ed). DHBA:10304 DMBA:16147 @@ -668156,24 +668167,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015793 induseum griseum - + - + - + MA - + FMA @@ -668697,7 +668708,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A lamina propria that is part of a duodenum. EMAPA:27255 @@ -668711,14 +668722,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( duodenum lamina propria - + - + FMA @@ -669358,20 +669369,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A dental pulp that is part of a narwhal tusk. uberon UBERON:0015853 dental pulp of median incisor tusk - + - + DOI:10.1002/ar.22886 @@ -670416,7 +670427,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:61082 NCIT:C32420 SCTID:362545007 @@ -670426,14 +670437,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015885 cymba conchae of pinna - + - + FMA @@ -670450,7 +670461,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The part of the nail plate that extends into the dermis (nail matrix). FMA:60128 NCIT:C33495 @@ -670461,14 +670472,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015886 root of nail - + - + FMA @@ -671747,7 +671758,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The circumference of the base of the glans forms a rounded projecting border, the corona of the glans penis, overhanging a deep retroglandular sulcus, behind which is the neck of the penis. FMA:19627 SCTID:362274002 @@ -671760,14 +671771,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( corona of glans penis - + - + FMA @@ -671798,7 +671809,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:19649 glans penile base uberon @@ -671806,14 +671817,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( base of glans penis - + - + FMA @@ -671888,7 +671899,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:24003 central part of body of vertebra uberon @@ -671896,14 +671907,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( central part of body of bony vertebral centrum - + - + FMA @@ -671956,7 +671967,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Subdivision of thorax which is anterior to the plane of the posterior boundary of the middle mediastinum. FMA:24816 SCTID:182331006 @@ -671968,14 +671979,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( anterior chest - + - + FMA @@ -672063,21 +672074,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:29741 bony part of arch of vertebra uberon UBERON:0016419 bony part of vertebral arch - + - + FMA @@ -672245,7 +672256,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The palmar branch of the median nerve is a branch of the median nerve which arises at the lower part of the forearm and innervates skin of proximal central palm and thenar eminence. does not pass through the carpal tunnel @@ -672262,14 +672273,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( palmar branch of median nerve - + - + FMA @@ -672977,7 +672988,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The midline prominence of the nose, extending from the nasal root to the tip. FMA:59517 SCTID:368114008 @@ -672988,14 +672999,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( dorsum of nose - + - + FMA @@ -673023,8 +673034,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + On the pinna, a curved prominence of cartilage, parallel with and in front of the helix, is called the antihelix, also known as the anthelix; this divides above into two crura, the crura antihelicis, between which is a triangular depression, the fossa triangularis. FMA:60995 NCIT:C32120 @@ -673040,24 +673051,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( antihelix - + - + - + FMA - + http://php.med.unsw.edu.au @@ -673097,8 +673108,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The antitragus is a feature of human ear anatomy. It is a small tubercle that points anteriorly. It is separated from the tragus by the intertragic notch. FMA:61001 NCIT:C32121 @@ -673111,24 +673122,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( antitragus - + - + - + FMA - + http://php.med.unsw.edu.au @@ -673551,7 +673562,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A soft, thin film of food debris, mucin, and dead epithelial cells deposited on the teeth, providing the medium for the growth of various bacteria. The main inorganic components are calcium and phosphorus, with small amounts of magnesium, potassium, and sodium; the organic matrix consists of polysaccharides, proteins, carbohydrates, lipids, and other components. Plaque plays an important etiologic role in the development of dental caries and periodontal and gingival diseases and provides the base for the development of materia alba; calcified plaque forms dental calculus. BTO:0000338 MESH:D003773 @@ -673562,14 +673573,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016482 dental plaque - + - + BTO @@ -673786,7 +673797,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Skeletal element that functionally replaces the notochord[VSAP,modified]. Skeletal element that surrounds the notochord.[VSAO] the main cylindrical portion of the vertebra ventral to the vertebral canal @@ -673798,7 +673809,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016491 vertebral centrum element - + @@ -673811,7 +673822,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + VSAO @@ -674071,7 +674082,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -674092,14 +674103,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016498 intestinal-cloacal junction - + - + ZFA-modified @@ -674204,7 +674215,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A muscularis mucosa that is part of a fundus of urinary bladder. EMAPA:28625 @@ -674213,14 +674224,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( muscularis mucosa of fundus of urinary bladder - + - + EMAPA @@ -674247,8 +674258,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + A muscularis mucosa that is part of a fundus of stomach. EMAPA:27165 FMA:17278 @@ -674256,24 +674267,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016501 muscularis mucosae of fundus of stomach - + - + - + FMA - + FMA @@ -674341,7 +674352,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -674357,7 +674368,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016504 umbilical ring - + @@ -674370,7 +674381,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA @@ -674947,7 +674958,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A muscularis mucosa that is part of a jejunum. EMAPA:27121 @@ -674957,14 +674968,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( muscularis mucosae of jejunum - + - + FMA @@ -675982,18 +675993,18 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + EHDAA2:0000566 uberon UBERON:0016547 lower foregut region endoderm - + - + @@ -676006,13 +676017,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2 - + EHDAA2 @@ -676424,8 +676435,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + An acellular membrane in the vestibular labyrinth that is composed of the otoconial layer, gelatinous layer, and a subcupular meshwork. FMA:75570 otoconial-statoconial membrane @@ -676435,11 +676446,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( See https://sourceforge.net/p/obo/zebrafish-anatomy-zfa-term-requests/132/ statoconial membrane - + - + @@ -676452,13 +676463,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MA-abduced - + Wikipedia @@ -676482,13 +676493,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:75588 uberon UBERON:0016568 gelatinous layer of statoconial membrane - + @@ -676501,7 +676512,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -677025,7 +677036,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:68868 neuronames:1700 rexed lamina VII @@ -677038,7 +677049,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016578 lamina VII of gray matter of spinal cord - + @@ -677051,7 +677062,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + https://github.com/obophenotype/uberon/issues/1277 @@ -677100,7 +677111,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:68869 neuronames:1701 rexed lamina VIII @@ -677113,7 +677124,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016579 lamina VIII of gray matter of spinal cord - + @@ -677126,7 +677137,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + https://github.com/obophenotype/uberon/issues/1277 @@ -677753,7 +677764,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:18306 isthmus tubae uterinae @@ -677765,7 +677776,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( isthmus of fallopian tube - + @@ -677778,7 +677789,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -678334,7 +678345,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:72580 neuronames:734 paramedian group (medullary reticular formation) @@ -678347,7 +678358,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016826 paramedian medullary reticular complex - + @@ -678360,7 +678371,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -678544,7 +678555,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -678563,14 +678574,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016843 lateral nucleus of trapezoid body - + - + to be verified @@ -679830,7 +679841,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The joint that is formed by the union of the humerus, the scapula (or shoulder blade), and the clavicle (or collarbone). Commonly thought of as a single joint, the shoulder is actually made up of two separate joints - the glenohumeral and acromioclavicular joints. MESH:D012785 SCTID:361835002 @@ -679839,14 +679850,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016884 shoulder joint - + - + definitional @@ -679951,7 +679962,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -679974,7 +679985,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016887 entire extraembryonic component - + @@ -679987,7 +679998,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + AEO @@ -680165,7 +680176,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -680182,14 +680193,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016912 frenulum of upper lip - + - + FMA @@ -680235,7 +680246,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -680254,14 +680265,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016913 frenulum of lower lip - + - + FMA @@ -680297,7 +680308,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:62921 NCIT:C32917 UMLS:C1167355 @@ -680307,7 +680318,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016914 lamina lucida - + @@ -680320,7 +680331,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -680486,7 +680497,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:13082 descending aortic arch descending limb of arch of aorta @@ -680495,14 +680506,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016920 descending trunk of arch of aorta - + - + FMA @@ -680531,7 +680542,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Area of aorta proximal to the ductus arteriosus. FMA:3774 SCTID:197773005 @@ -680540,14 +680551,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016923 preductal region of aortic arch - + - + FMA @@ -680570,7 +680581,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Area of aorta distal to the ductus arteriosus. FMA:3776 SCTID:197852003 @@ -680579,14 +680590,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016924 postductal region of aortic arch - + - + FMA @@ -680609,7 +680620,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Area of aorta at the area of insertion to the ductus arteriosus. FMA:3771 FMA:3778 @@ -680622,14 +680633,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016925 juxtaductal region of aortic arch - + - + FMA @@ -681488,21 +681499,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + retractor lateralis m. retractor lateralis uberon UBERON:0017196 retractor lateralis muscle - + - + cjm @@ -681805,7 +681816,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The portion of the teeth, occurring on the lingual or palatal aspects, that forms a convex protuberance at the cervical third of the anatomic crown. It represents the lingual or palatal developmental lobe of these teeth. FMA has no definition but places this generically with upper, lower, canine, incisor subclasses. Wiktionary states cingulum is lower jaw molar only, and cingulid is upper molar only FMA:56731 @@ -681818,14 +681829,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0017295 cingulum of tooth - + - + FMA @@ -682924,7 +682935,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A paired dural venous sinus at the rim of the foramen magnum. EHDAA2:0001064 @@ -682937,7 +682948,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( marginal venous sinus - + @@ -682950,7 +682961,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2 @@ -682978,7 +682989,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The primitive marginal sinuses (PMS) are embryonic sinuses forming the later superior sagittal sinus. EHDAA2:0001514 uberon @@ -682986,14 +682997,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0017638 primitive marginal sinus - + - + EHDAA2 @@ -683059,7 +683070,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Branch of spinal nerve that innervates the structures of the vertebral column. FMA:5988 @@ -683074,14 +683085,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( meningeal branch of spinal nerve - + - + FMA @@ -683786,7 +683797,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A raised fleshy area on the palm of the hand near the base of the thumb. FMA:61520 SCTID:362748007 @@ -683797,14 +683808,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( thenar eminence - + - + FMA @@ -683826,7 +683837,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Hypothenar refers to a group of three muscles of the palm that control the motion of the little finger. The three muscles are: Abductor digiti minimi Flexor digiti minimi Opponens digiti minimi. FMA:61523 SCTID:362749004 @@ -683837,14 +683848,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( hypothenar eminence - + - + FMA @@ -684236,7 +684247,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The thinner portion of the muscle of the palatopharyngeal arch, originating in the region of the midline where its fibers interdigitate with the contralateral partner, then passing posterior to the levator veli palatini muscle to join the longitudinal layer of pharyngeal musculature; acts as a sort of sphincter, reducing the caliber of the isthmus of fauces at the palatopharyngeal arch. FMA:46684 SCTID:244801005 @@ -684249,14 +684260,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018103 posterior fascicle of palatopharyngeus - + - + FMA @@ -685724,7 +685735,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The lateral limit of each lateral part of the oral fissure. FMA:77269 MFMO:0000145 @@ -685737,14 +685748,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( angle of oral opening https://github.com/obophenotype/uberon/issues/1795 - + - + MFMO-modified @@ -685861,7 +685872,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A small, triangular, flaccid portion of the tympanic membrane, or eardrum, lying above the malleolar folds, attached directly to the petrous bone at the notch of Rivinus. Size varies across mammals, with the sheep pars flaccida larger than the human FMA:56721 @@ -685876,14 +685887,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018152 pars flaccida of tympanic membrane - + - + FMA @@ -685938,7 +685949,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:56722 SCTID:362555006 pars tensa (membrana tympanica) @@ -685947,14 +685958,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018153 pars tensa of tympanic membrane - + - + FMA @@ -686153,7 +686164,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:52771 SCTID:368922002 folian process @@ -686164,14 +686175,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018160 anterior process of malleus - + - + FMA @@ -686804,8 +686815,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + A sensory tract originating in the spinal cord responsible for transmitting fine touch, vibration and conscious proprioceptive information from the body to the cerebral cortex. The components include the fasciculus gracilis and fasciculus cuneatus. DMBA:17759 Wikipedia:Posterior_column-medial_lemniscus_pathway @@ -686825,24 +686836,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018237 dorsal column-medial lemniscus pathway - + - + - + ISBN:978-1-4615-0037-7 - + Wikipedia @@ -687025,7 +687036,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -687050,14 +687061,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018240 panniculus carnosus muscle - + - + FFED:cw @@ -687211,7 +687222,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A vein that supplies blood to the thymus. FMA:10647 @@ -687225,14 +687236,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The arteries supplying the thymus are derived from the internal thoracic artery, and from the superior thyroid artery and inferior thyroids.[WP] thymic artery - + - + FMA @@ -687552,7 +687563,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -687569,14 +687580,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( skeletal musculature - + - + MA @@ -687935,7 +687946,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The anterior or rostral end of the zygomatic arch, which includes the temporal process of the zygomatic bone, but also including some of the body of the zygomatic bone. It may also include the zygomatico-temporal suture and the most rostral portion of the zygomatic process of the temporal bone. requires definition see https://github.com/obophenotype/uberon/issues/492 MFMO:0000109 @@ -687943,14 +687954,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018265 anterior root of zygomatic arch - + - + MFMO @@ -690949,7 +690960,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A unit of the tectoral membrane that is shaped like string of flat, pearls. Modified from Manley, Fey and Popper 2008 . @@ -690957,14 +690968,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018374 sallet - + - + ISBN:9780387714691 @@ -691533,7 +691544,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The posterior superior alveolar artery (posterior dental artery) is given off from the maxillary, frequently in conjunction with the infraorbital just as the trunk of the vessel is passing into the pterygopalatine fossa. FMA:49757 @@ -691544,14 +691555,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( posterior superior alveolar artery - + - + FMA @@ -691590,7 +691601,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:52930 SCTID:280235006 SCTID:280239000 @@ -691599,14 +691610,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018398 superior alveolar nerve - + - + FMA @@ -691669,7 +691680,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:53243 SCTID:280261005 inferior dental nerve @@ -691677,14 +691688,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018405 inferior alveolar nerve - + - + FMA @@ -691718,7 +691729,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Mental nerve is a general somatic afferent (sensory) nerve which provides sensation to the anterior aspects of the chin and lower lip as well as the buccal gingivae of the mandibular anterior teeth and the premolars. It is a branch of the posterior trunk of the inferior alveolar nerve, which is itself a branch of the mandibular division of the trigeminal nerve (CN V). The nerve emerges at the mental foramen in the mandibula, and divides beneath the Depressor anguli oris muscle into three branches: one descends to the skin of the chin. two ascend to the skin and mucous membrane of the lower lip. These branches communicate freely with the facial nerve. FMA:53250 SCTID:280138001 @@ -691727,14 +691738,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018406 mental nerve - + - + FMA @@ -693039,8 +693050,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf. EFO:0003699 TAO:0005028 @@ -693054,11 +693065,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018549 ventral wall of dorsal aorta - + - + @@ -693071,13 +693082,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + ZFA - + ZFA @@ -695494,7 +695505,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The peristomium is the second body segment in an annelid worm's body in the anterior end. It is directly behind the prostomium and contains the mouth, tentacular cirri, and sometimes feeding palps, which may instead occur on the prostomium. If an eversible pharynx is present, it is contained in this segment as well, and can fill up to 20 segments when inverted, depending on the species. peristomium Wikipedia:Peristomium @@ -695502,14 +695513,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018650 annelid peristomium - + - + Wikipedia @@ -696127,7 +696138,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Thoracic splanchnic nerves are splanchnic nerves that arise from the sympathetic trunk in the thorax and travel inferiorly to provide sympathetic innervation to the abdomen. The nerves contain preganglionic sympathetic and general visceral afferent fibers. FMA:6280 @@ -696137,14 +696148,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( thoracic splanchnic nerve - + - + FMA @@ -696832,7 +696843,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -696869,14 +696880,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0019197 dorsal nerve of penis - + - + FMA @@ -696941,7 +696952,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -696964,14 +696975,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0019198 dorsal nerve of clitoris - + - + FMA @@ -697000,21 +697011,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + SCTID:182332004 side of chest uberon UBERON:0019199 lateral side of chest - + - + FMA @@ -698578,7 +698589,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A fiber pathway in the cerebral white matter that connects anterior portions of the temporal lobe with the inferior frontal gyrus and the middle frontal gyrus. It is not readily distinguished in myelin-stained cross-sections (adapted from Brain Info). HBA:9284 NLX:98733 @@ -698588,14 +698599,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0019275 uncinate fasciculus of the forebrain - + - + HBA @@ -698617,7 +698628,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1447 DHBA:12130 @@ -698627,14 +698638,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( inferior rostral gyrus - + - + DHBA @@ -698644,7 +698655,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1311 DHBA:12129 @@ -698655,14 +698666,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( superior rostral gyrus - + - + DHBA @@ -698678,7 +698689,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:146034876 uberon @@ -698686,14 +698697,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( rostral gyrus - + - + DHBA @@ -698714,7 +698725,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12064 FMA:62439 @@ -698725,7 +698736,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0019283 lateral longitudinal stria - + @@ -698738,7 +698749,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -698820,7 +698831,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DMBA:15965 EMAPA:35107 MA:0002932 @@ -698829,14 +698840,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0019289 accessory olfactory bulb external plexiform layer - + - + MA @@ -698852,7 +698863,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DMBA:15962 EMAPA:35110 MA:0002934 @@ -698861,14 +698872,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0019290 accessory olfactory bulb internal plexiform layer - + - + MA @@ -699247,7 +699258,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A group of cells located between the lateral septal nucleus and the anterior commissure in the mouse ( Paxinos-2001 ). Some authors regard it as part of the lateral septal nucleus ( Swanson-1998 ). DHBA:13033 DMBA:15761 @@ -699257,14 +699268,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0019308 septohypothalamic nucleus - + - + DHBA @@ -699419,7 +699430,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12649 HBA:9551 neuronames:1118 @@ -699427,14 +699438,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0019314 epifascicular nucleus - + - + HBA @@ -699926,7 +699937,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:35694 MA:0002928 MBA:780 @@ -699935,14 +699946,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022229 posterior amygdaloid nucleus - + - + MA @@ -699958,7 +699969,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:35745 MA:0000920 MBA:822 @@ -699968,14 +699979,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022230 retrohippocampal region - + - + ABA @@ -699991,7 +700002,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -700004,14 +700015,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022232 secondary visual cortex - + - + cjm @@ -700022,8 +700033,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + DHBA:12066 FMA:67956 HBA:265505202 @@ -700045,11 +700056,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022234 medial longitudinal stria - + - + @@ -700062,13 +700073,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA - + HBA @@ -700224,7 +700235,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:266441633 FMA:62074 @@ -700239,14 +700250,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022237 anterior thalamic peduncle - + - + HBA @@ -700494,7 +700505,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The superior longitudinal fasciculus (also called the superior longitudinal fascicle or SLF) is a pair of long bi-directional bundles of neurons connecting the front and the back of the cerebrum. Each association fiber bundle is lateral to the centrum ovale of a cerebral hemisphere and connects the frontal, occipital, parietal, and temporal lobes. The neurons pass from the frontal lobe through the operculum to the posterior end of the lateral sulcus where numerous neurons radiate into the occipital lobe and other neurons turn downward and forward around the putamen and radiate to anterior portions of the temporal lobe. DHBA:10592 FMA:77631 @@ -700507,14 +700518,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022246 superior longitudinal fasciculus - + - + HBA @@ -700536,21 +700547,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:10568 uberon FIFT UBERON:0022247 forebrain ipsilateral fiber tracts - + - + DHBA @@ -700698,7 +700709,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The precentral sulcus lies parallel to, and in front of, the central sulcus. (A sulcus is one of the prominent grooves on the surface of the human brain. ) The precentral sulcus divides the inferior, middle, and superior frontal gyri from the precentral gyrus. In the majority of brains, the precentral sulcus is divided into two parts: the inferior precentral sulcus and the superior precentral sulcus. However, the precentral sulcus may also be divided into three parts or form one continuous sulcus. DHBA:10628 FMA:83800 @@ -700710,7 +700721,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022252 precentral sulcus - + @@ -700723,7 +700734,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA @@ -700756,7 +700767,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The thalamic fasciculus is a component of the subthalamus. It is sometimes considered synonymous with 'field H1 of Forel'. Nerve fibres forming a composite bundle containing cerebellothalamic (crossed) and pallidothalamic (uncrossed) fibres that is insinuated between the thalamus and zona incerta. The thalamic fasciculus consists of the joint fibers of the ansa lenticularis and the lenticular fasciculus, coming from different portions of the medial globus pallidus, before they jointly enter the ventral lateral nucleus of the thalamus. DHBA:10593 FMA:62065 @@ -700784,14 +700795,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022254 ventral thalamic fasciculus - + - + DHBA @@ -700921,7 +700932,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -700949,14 +700960,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022256 subthalamic fasciculus - + - + DHBA @@ -700991,7 +701002,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12648 FMA:77099 HBA:9548 @@ -701000,14 +701011,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022258 endolemniscal nucleus - + - + HBA @@ -701087,7 +701098,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The acoustic radiations or auditory radiations are structures found in the brain, in the ventral cochlear pathway, a part of the auditory system. Lesions to the auditory radiations could be a cause of cortical deafness. DHBA:266441583 FMA:62413 @@ -701104,7 +701115,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022262 auditory radiation - + @@ -701117,7 +701128,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA @@ -701170,7 +701181,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The optic radiation (also known as the geniculo-calcarine tract or as the geniculostriate pathway) is a collection of axons from relay neurons in the lateral geniculate nucleus of the thalamus carrying visual information to the visual cortex (also called striate cortex) along the calcarine fissure. There is one such tract on each side of the brain. DHBA:266441621 @@ -701196,7 +701207,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb - + @@ -701209,7 +701220,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA @@ -701285,7 +701296,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The planum temporale is the cortical area just posterior to the auditory cortex within the Sylvian fissure. It is a triangular region which forms the heart of Wernicke's area, one of the most important functional areas for language. The planum temporale shows a significant asymmetry. In 65% of all individuals the left planum temporale appears to be more developed, while the right planum temporale is more developed in only 10%. In some peoplebs brains, the planum temporale is more than five times larger on the left than on the right, making it the most asymmetrical structure in the brain. This greater size of the left planum temporale compared with the right is already present in the foetus, where it can be observed starting from the 31st week of gestation. This observation strengthens the hypothesis of a genetic predisposition for brain asymmetry. @@ -701301,14 +701312,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb - + - + HBA @@ -701333,7 +701344,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Corticopontine fibers, commonly referred to as corticobulbar fibers, are projections from the cerebral cortex to the pontine nuclei. Depending upon the lobe of origin, they can be classified as frontopontine fibers, parietopontine fibers, temporopontine fibers and occipitopontine fibers. They are motor fibers that stretch from the precentral gyrus (motor strip) to the nuclei of cranial nerves V (trigenimal), VII (facial) and XII (hypoglossal). These fibers run alongside the corticospinal fibers. DHBA:266441721 FMA:75190 @@ -701355,14 +701366,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022271 corticopontine fibers - + - + HBA @@ -701433,7 +701444,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -701460,14 +701471,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022272 corticobulbar tract - + - + HBA @@ -701676,7 +701687,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The splenic (or left colic) flexure is a sharp bend between the transverse and the descending colon in the left upper quadrant of humans. The left colic flexure is near the spleen, and hence called the splenic flexure. There are two colic flexures in the transverse colon &mdash; the other being the hepatic flexure in the right upper quadrant. FMA:14551 @@ -701696,14 +701707,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb - + - + Wikipedia @@ -701777,7 +701788,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Hepatic (or the right colic) flexure is the sharp bend between the ascending and the transverse colon. The right colic flexure is adjacent to the liver, and is therefore also known as the hepatic flexure. Thus, the left colic flexure is also known as the splenic flexure (as it is close to the spleen). The hepatic flexure lies in the right upper quadrant of the abdomen in humans. FMA:14550 @@ -701797,14 +701808,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb - + - + Wikipedia @@ -702280,7 +702291,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -702296,14 +702307,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022287 tear film - + - + primarily aqueous layer @@ -702492,7 +702503,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A nerve that innervates a lower eyelid and is a branch of the infra-orbital branch of the maxillary nerve. @@ -702503,7 +702514,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022296 inferior palpebral branch of infra-orbital nerve - + @@ -702519,7 +702530,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -702541,7 +702552,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -702557,7 +702568,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022297 palpebral branch of infra-orbital nerve - + @@ -702573,7 +702584,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -702660,8 +702671,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + A branch of the ophthalmic nerve that serves to supply the mucous membrane of the nose, the tip of the nose, and the conjunctiva. BTO:0001452 @@ -702678,24 +702689,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( nasociliary nerve - + - + - + BTO - + FMA @@ -703011,8 +703022,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + Note that in some lamination schemes, more particularly so in primates, this layer is referred to as layer IV thus resulting in some confusion when compared to the present scheme where the lamina dissecans is referred to layer IV[DOI:10.1155/2008/381243] NLX:144263 uberon @@ -703021,24 +703032,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022315 primary motor cortex layer 5 - + - + - + nlx - + nlx @@ -703060,8 +703071,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + NLX:144264 uberon primary motor cortex lamina 6 @@ -703070,24 +703081,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022316 primary motor cortex layer 6 - + - + - + nlx - + nlx @@ -703127,7 +703138,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -703154,14 +703165,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022317 olfactory cortex layer 1 - + - + nlx @@ -703201,7 +703212,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -703221,14 +703232,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022318 olfactory cortex layer 2 - + - + nlx @@ -703335,7 +703346,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -703361,14 +703372,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( This layer is better developed in the medial entorhinal cortex although species differences are apparent[DOI:10.1155/2008/381243] entorhinal cortex layer 4 - + - + nlx @@ -703427,7 +703438,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -703448,14 +703459,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( entorhinal cortex layer 5 - + - + nlx @@ -703478,7 +703489,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NLX:89 uberon MoC @@ -703486,7 +703497,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022326 molecular layer of dorsal cochlear nucleus - + @@ -703499,7 +703510,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nlx @@ -703533,7 +703544,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -703560,14 +703571,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( entorhinal cortex layer 3 - + - + nlx @@ -703625,7 +703636,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -703648,14 +703659,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( This layer is delineated by the white matter, multiple layers can be distinguished, more in particular in primates[DOI:10.1155/2008/381243] entorhinal cortex layer 6 - + - + nlx @@ -703696,7 +703707,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -703724,14 +703735,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( entorhinal cortex layer 1 - + - + nlx @@ -703803,7 +703814,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -703827,14 +703838,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022337 entorhinal cortex layer 2 - + - + nlx @@ -703881,7 +703892,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Superficial region of layer 2 of the piriform cortex characterized by a less dense packing of cells and a concentration of semilunar cell bodies. NLXANAT:091007 uberon @@ -703892,7 +703903,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( piriform cortex layer 2a - + @@ -703905,7 +703916,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nlx @@ -703940,7 +703951,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Deeper of two subdivisions of piriform layer 2 characterized by more densely packed cell bodies dominated by pyramidal cell bodies. NLXANAT:091008 uberon @@ -703948,7 +703959,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( piriform cortex layer 2b - + @@ -703961,7 +703972,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nlx @@ -703977,7 +703988,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:277810 NLXANAT:1008003 uberon @@ -703986,14 +703997,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022346 dentate gyrus molecular layer middle - + - + nlx @@ -704015,7 +704026,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Inner third of the dentate gyrus. FMA:277812 NLXANAT:1008004 @@ -704025,14 +704036,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022347 dentate gyrus molecular layer inner - + - + nlx @@ -704060,7 +704071,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NLXANAT:1008005 uberon enclosed blade of stratum granulare @@ -704071,14 +704082,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022348 dentate gyrus granule cell layer inner blade - + - + nlx @@ -704118,7 +704129,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NLXANAT:1008006 uberon exposed blade of stratum granulare @@ -704129,14 +704140,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022349 dentate gyrus granule cell layer outer blade - + - + nlx @@ -704292,7 +704303,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Component of the orbtial frontal cortex. The rostral boundary is the first slice where the medial orbital gyrus became visible whereas the caudal boundary is the disappearance of the medial orbital gyrus/gyrus rectus. The medial and lateral boundaries are the cingulate cortex on the u2018inflatedu2019 surface and the medial bank of the superior frontal gyrus (or the cingulate gyrus when visible) respectively (Christine Fennema-Notestine). frontal medial cortex @@ -704303,14 +704314,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022352 medial orbital frontal cortex - + - + NIFSTD @@ -704344,7 +704355,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Component of the cingulate cortex. The rostral and caudal extent were the caudal anterior and the isthmus divisions of the cingulate cortex respectively. The medial and lateral boundaries were the corpus callosum and as the superior frontal gyrus and/or paracentral lobule respectively (Christine Fennema-Notestine). check relationship to gyrus. See https://github.com/obophenotype/uberon/issues/626 posterior cingulate @@ -704359,14 +704370,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022353 posterior cingulate cortex - + - + NIFSTD @@ -704952,8 +704963,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + DHBA:146034872 FMA:71037 @@ -704964,24 +704975,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( paracingulate gyrus - + - + - + FMA - + DHBA @@ -705022,7 +705033,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The second order neuron fibers of the corticopontocerebellar tracts that cross to the other side of the pons and run within the middle cerebellar peduncles, from the pons to the contralateral cerebellum. DHBA:12769 HBA:265505470 @@ -705038,14 +705049,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022421 pontocerebellar tract - + - + DHBA @@ -705153,7 +705164,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A group of neurons embedded in the pontine central gray of the pontine tegmentum. Located dorsal to the internal genu of the facial nerve, it is found in the human ( Paxinos-2012 ), the macaque ( Paxinos-2009a ), the rat ( Swanson-2004 ), and the mouse ( Franklin-2008 ). Functionally it is part of the dorsal pontine gray of the subcortical motor system ( Swanson-2004 ). DHBA:12662 DMBA:17190 @@ -705164,14 +705175,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022424 supragenual nucleus of pontine tegmentum - + - + DHBA Neuronames-def @@ -705201,7 +705212,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:15541 @@ -705211,14 +705222,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022425 anterior corona radiata - + - + DHBA @@ -705247,7 +705258,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:15542 superior portion of corona radiata @@ -705256,14 +705267,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022426 superior corona radiata - + - + DHBA @@ -705286,7 +705297,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:15543 posterior portion of corona radiata @@ -705295,14 +705306,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022427 posterior corona radiata - + - + DHBA @@ -705495,7 +705506,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Part of the superior olivary complex of nuclei in the caudal pontine tegmentum, situated within the trapezoid body in humans. (Brodal, Neurological Anatomy, 3rd edition, 1981, pg 617). In many species, it comprises a medial superior olivary nucleus and a lateral superior olivary nucleus. Wikipedia includes Medial nucleus of the trapezoid body. Wikipedia:Superior_olivary_complex#Primary_nuclei many sources refer to this simply as the 'superior olive' or the 'superior olivary nucleus'. However, this is confusing as superior olive is sometimes used to denote the full SOC, which includes periolvary nuclei[https://github.com/obophenotype/uberon/issues/631] @@ -705510,14 +705521,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022434 primary superior olive - + - + NIFSTD @@ -705540,7 +705551,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nuclei periolivares peri-olivary nuclei DHBA:15561 @@ -705553,14 +705564,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022437 dorsal periolivary nucleus - + - + Wikipedia @@ -705596,7 +705607,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Component of the cingulate cortex. The rostral boundary was the first appearance of the cingulate sulcus (inferior to the superior frontal sulcus) whereas the caudal boundary was the first appearance of the genu of the corpus callosum. The medial boundary was the medial aspect of the cortex. The supero-lateral boundary was the superior frontal gyrus whereas the infero-lateral boundary was defined as the medial division of the orbitofrontal gyrus (Christine Fennema-Notestine). BIRNLEX:975 rostral anterior cingulate cortex @@ -705604,14 +705615,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022438 rostral anterior cingulate cortex - + - + NIFSTD @@ -705634,7 +705645,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A part of the entorhinal area defined on the basis of connectivity. It is the rostral portion, which receives a projection from the olfactory bulb (Price-90)-Adapted from Brain Info. BIRNLEX:2705 neuronames:2274 @@ -705643,14 +705654,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022453 olfactory entorhinal cortex - + - + NIFSTD @@ -705673,7 +705684,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A group of structures defined by connectivity, namely, structures that receive axons from the olfactory bulb. They include the anterior olfactory nucleus, the anterior perforated substance, the rostral part of the medial amygdaloid nucleus (anterior cortical nucleus of amygdala), and structures in the anterior part of the parahippocampal gyrus, namely, the prepyriform area, most of the periamygdaloid area, and the rostral part of the entorhinal area (Price-90). Note that some authors have regarded the olfactory bulb itself as the primary olfactory area and the areas to which it projects as secondary (Anthoney-94). In the mouse (Dong-2004) and the rat (Swanson-2004), olfactory areas include the olfactory bulb, accessory olfactory bulb, anterior olfactory nucleus, tenia tecta, prepyriform area, postpiriform transition area, piriform amygdaloid area, nucleus of lateral olfactory tract, and cortical amygdaloid area. BIRNLEX:2706 uberon @@ -705681,14 +705692,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022469 primary olfactory cortex - + - + NIFSTD @@ -705742,7 +705753,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Component of the parietal lobe. The rostral boundary of the pericalcarine cortex was the first appearance of the calcarine sulcus whereas the caudal boundary was the most posterior coronal slice where the calcarine sulcus was visualized. The medial and lateral boundaries were the medial portion of the temporal and occipital cortices and the inferomedial end of the calcarine sulcus respectively (Christine Fennema-Notestine). BIRNLEX:1059 pericalcarine cortex @@ -705750,14 +705761,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022534 pericalcarine cortex - + - + NIFSTD @@ -705915,7 +705926,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1176 UMLS:C0228391 neuronames:461 @@ -705924,14 +705935,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022649 habenulo-interpeduncular tract of diencephalon - + - + ZFA @@ -706048,7 +706059,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1223 UMLS:C0152301 orbital gyri complex @@ -706057,14 +706068,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022695 orbital gyri complex - + - + NIFSTD @@ -706107,7 +706118,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Component of the orbtial frontal cortex The rostral boundary is the first slice where the lateral orbital gyrus is apparent with the frontomarginal sulcus whereas the caudal boundary is the disappearance of the lateral orbital gyrus. The medial and lateral boundaries are the midpoint of the olfactory sulcus and the lateral bank of the lateral orbital sulcus and/or the circular insular sulcus respectively (Christine Fennema-Notestine). BIRNLEX:1244 lateral orbital frontal cortex @@ -706115,14 +706126,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022716 lateral orbital frontal cortex - + - + NIFSTD @@ -706145,7 +706156,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1258 transverse frontopolar gyri complex uberon @@ -706153,14 +706164,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022730 transverse frontopolar gyri complex - + - + NIFSTD @@ -706551,7 +706562,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The reticulospinal tract (or anterior reticulospinal tract) is an extrapyramidal motor tract which travels from the reticular formation. BIRNLEX:1471 UMLS:C0175558 @@ -706562,7 +706573,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022943 reticulospinal tract - + @@ -706575,7 +706586,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -706838,7 +706849,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1622 HBA:4447 neuronames:851 @@ -706849,14 +706860,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023094 posterodorsal nucleus of medial geniculate body - + - + NIFSTD @@ -707061,7 +707072,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:2649 FMA:72610 UMLS:C0175539 @@ -707072,14 +707083,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023378 medullary anterior horn - + - + FMA @@ -707104,7 +707115,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:2662 HBA:9661 UMLS:C0175521 @@ -707119,14 +707130,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023390 medial subnucleus of solitary tract - + - + NIFSTD @@ -707770,7 +707781,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -707790,14 +707801,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023740 habenulo-interpeduncular tract of midbrain - + - + NIFSTD @@ -707815,7 +707826,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:906 UMLS:C0175321 intermediate part of hypophysis @@ -707827,14 +707838,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023752 intermediate part of hypophysis - + - + NIFSTD @@ -707895,7 +707906,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A composite structure of the temporal lobe that includes the subiculum, the presubiculum and the parasubicular area (Amaral-90). BIRNLEX:944 @@ -707907,14 +707918,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( subicular complex - + - + NIFSTD @@ -708093,7 +708104,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An area of the brain that locates at the interception of temporal and parietal cortices (at the posterior end of the Sylvian fissure). NLX:144255 temporoparietal junction @@ -708101,14 +708112,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023852 temporoparietal junction - + - + NIFSTD @@ -708156,7 +708167,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NLX:144265 primary somatosensory cortex lamina VI uberon @@ -708164,14 +708175,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023859 primary somatosensory cortex layer 6 - + - + NIFSTD @@ -708193,7 +708204,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A portion of the superior temporal gyrus near the temporal pole in the human. HBA:4177 @@ -708207,14 +708218,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb - + - + NIFSTD @@ -708262,21 +708273,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NLX:22533 medial ventral tegmental area uberon UBERON:0023865 medial ventral tegmental area - + - + NIFSTD @@ -708292,8 +708303,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + Part of olfactory tubercle defined by dense aggregations of granule cells. NLX:50741 islands of calleja of olfactory tubercle @@ -708302,24 +708313,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023867 islands of Calleja of olfactory tubercle - + - + - + NIFSTD - + NIFSTD @@ -708347,7 +708358,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Regional part of telencephalon; the most prominent of the islands of Calleja located medially in the nucleus accumbens (adapted from Braininfo.org). DHBA:10359 MBA:489 @@ -708361,14 +708372,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023868 isla magna of Calleja - + - + NIFSTD @@ -708470,7 +708481,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Superficial part of plexiform layer (layer 1) of piriform cortex that receives afferents from the olfactory bulb by way of the lateral olfactory tract. NLXANAT:091004 piriform cortex layer 1a @@ -708478,14 +708489,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023900 piriform cortex layer 1a - + - + NIFSTD @@ -708508,7 +708519,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Deeper part of the plexiform (layer 1) of piriform cortex characterized by projection of association fibers from other parts of the piriform cortex and other olfactory areas. NLXANAT:091005 piriform cortex layer 1b @@ -708516,14 +708527,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023901 piriform cortex layer 1b - + - + NIFSTD @@ -708956,7 +708967,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Part of bed nucleus of stria terminalis, comprising a distinct, large, egg-shaped collection of neurons that, together with the juxtacapsular (Ju) and rhomboid (Rh) nuclei, encompass the anterolateral area of the BST (Ju and Swanson, 1989). NLXANAT:1005035 bed nuclei of the stria terminalis oval nucleus @@ -708964,14 +708975,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023958 bed nuclei of the stria terminalis oval nucleus - + - + NIFSTD @@ -708993,7 +709004,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Central cervical spinocerebellar tract. NLXANAT:1010018 central cervical spinocerebellar tract @@ -709001,14 +709012,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023983 central cervical spinocerebellar tract - + - + NIFSTD @@ -709030,7 +709041,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Originates from cells rostral to Clarke's column and sends uncrossed axons through the lateral funiculus to the cerebellum. It reaches the cerebellum partly through the brachium conjunctivum and partly through the restiform body, terminating bilaterally in the anterior lobe of the cerebellum. NLXANAT:1010019 rostral spinocerebellar tract @@ -709038,14 +709049,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023984 rostral spinocerebellar tract - + - + NIFSTD @@ -709434,21 +709445,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NLXANAT:20081247 rostral portion of the medial accessory olive uberon UBERON:0024043 rostral portion of the medial accessory olive - + - + NIFSTD @@ -709600,7 +709611,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Posterior division of the supraoptic nucleus, formed by the ascension of the optic tract splitting the nucleus into two regions. The tuberal SON lies along the posterior tuber cinereum of the hypothalamus. In some species, some neurons lie under the optic chiasm. NLXANAT:20090311 tuberal supraoptic nucleus @@ -709609,14 +709620,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0024079 tuberal supraoptic nucleus - + - + NIFSTD @@ -709708,7 +709719,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The basis pontis is the anterior portion of the pons. NLXANAT:20090704 Wikipedia:Basilar_part_of_pons @@ -709717,14 +709728,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0024110 basis pontis - + - + NIFSTD @@ -709883,7 +709894,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1064 FMA:274414 neuronames:842 @@ -709892,14 +709903,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0024183 inferior transverse frontopolar gyrus - + - + NIFSTD @@ -709926,7 +709937,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1074 neuronames:823 medial transverse frontopolar gyrus @@ -709934,14 +709945,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0024193 medial transverse frontopolar gyrus - + - + NIFSTD @@ -709958,7 +709969,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1082 FMA:274408 neuronames:1 @@ -709967,14 +709978,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0024201 superior transverse frontopolar gyrus - + - + NIFSTD @@ -710752,14 +710763,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1789 left sub-lobar region uberon UBERON:0024900 left sub-lobar region - + @@ -710772,7 +710783,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -710789,14 +710800,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1790 right sub-lobar region uberon UBERON:0024901 right sub-lobar region - + @@ -710809,7 +710820,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -712135,7 +712146,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NLXANAT:20081237 paravermis parts of the cerebellar cortex uberon @@ -712143,14 +712154,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0025677 paravermis parts of the cerebellar cortex - + - + cjm @@ -713926,8 +713937,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + A superficial feature of the parietal lobe. It is the portion of the superior temporal sulcus that extends into the angular gyrus (Ono-90). (NN). BIRNLEX:4012 HBA:9384 @@ -713937,24 +713948,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0026725 angular sulcus - + - + - + NIFSTD - + NIFSTD @@ -714458,7 +714469,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + lateral eminence BIRNLEX:994 UMLS:C0262266 @@ -714468,14 +714479,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0027109 lateral eminence of hypophysis - + - + NIFSTD @@ -714792,7 +714803,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + consider merging DHBA:12384 @@ -714804,14 +714815,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( paravermis lobule area - + - + NIFSTD @@ -715168,7 +715179,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1130 posterior superior frontal sulcus @@ -715176,14 +715187,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0027513 posterior superior frontal sulcus - + - + NIFSTD @@ -715406,7 +715417,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1338 neuronames:838 anterior superior frontal sulcus @@ -715417,14 +715428,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0027716 anterior superior frontal sulcus - + - + NIFSTD @@ -715765,7 +715776,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A projecting portion of the spiral ligament of the cochlea, bounding the lower edge of the stria vascularis and containing within it a blood vessel, the vas prominens. spiral prominence BIRNLEX:2532 @@ -715780,14 +715791,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0028194 spiral prominence of cochlear duct - + - + MA @@ -718463,7 +718474,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Composite sulcus of the frontal lobe of the macaque. Located on the dorsolateral surface, it consists of the superior ramus of the arcuate sulcus (macaque), the inferior ramus of the arcuate sulcus and the spur of the arcuate sulcus (macaque) (neuronames:2379). NLX:153910 @@ -718477,14 +718488,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034671 arcuate sulcus - + - + NIFSTD @@ -718576,7 +718587,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A cytoarchitecturally defined portion of the periamygdalar area and the cortical amygdalar nucleus at the caudal extreme of the amygdala. All authors regard it as occupying the caudal third of the amygdala, which abuts the hippocampal formation. In the human ( Mai-1997 ) and the macaque ( Amaral-1992 ) it is located close to the medial surface of the temporal lobe; it is bounded internally by the posterior cortical amygdalar nucleus and the temporal horn of the lateral ventricle. In the rat ( Swanson-2004 ) and mouse ( Hof-2000 ) it is bounded largely by the posterior cortical amygdalar nucleus and the accessory basal nucleus (known as the basomedial nucleus of the amygdala in rodents); the stria terminalis separates it from the ventricle. According to some authors the amygdalohippocampal area extends anteriorly to occupy the caudal half of the amygdala. These authors divide the area into two or three parts, which in the human ( Olmos-2004 ), the rat ( Paxinos-2009b ), and the mouse ( Franklin-2008 ) are named on the basis of location: anterolateral, posterolateral and posteromedial parts. In the macaque ( Paxinos-2009a ) the rostral portion of the area is divided into two parts on the basis of cellular morphology: magnocellular and parvicellular parts. Some authors refer to the area in rodents as the 'posterior amygdalar nucleus' ( Swanson-2004; Hof-2000 ).[neuronames:2028] @@ -718604,14 +718615,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( amygdalohippocampal area - + - + DHBA @@ -718725,7 +718736,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12025 FMA:61949 @@ -718752,14 +718763,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034676 forceps major of corpus callosum - + - + DHBA @@ -718881,7 +718892,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12024 FMA:61944 SCTID:369199005 @@ -718907,14 +718918,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034678 forceps minor of corpus callosum - + - + DHBA @@ -719192,8 +719203,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The cremasteric artery (external spermatic artery) is a branch of the Inferior epigastric artery which accompanies the spermatic cord, and supplies the Cremaster and other coverings of the cord, anastomosing with the testicular artery (internal spermatic artery in older texts). (In the female, the cremesteric artery is very small and accompanies the round ligament.). FMA:70192 @@ -719206,24 +719217,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( cremasteric artery - + - + - + FMA - + FMA @@ -719736,7 +719747,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -719750,14 +719761,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034710 spinal cord ventricular layer - + - + EHDAA2 @@ -720317,7 +720328,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The pharyngeal nerve (pterygopalatine nerve) is a small branch arising from the posterior part of the pterygopalatine ganglion. It passes through the pharyngeal canal with the pharyngeal branch of the maxillary artery, and is distributed to the mucous membrane of the nasal part of the pharynx, behind the auditory tube. FMA:52731 SCTID:58267004 @@ -720331,14 +720342,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034725 pterygopalatine nerve - + - + FMA @@ -720438,7 +720449,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The artery of bulb of vestibule is a branch of the internal pudendal artery. FMA:20900 @@ -720451,14 +720462,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( vestibular bulb artery - + - + FMA @@ -720741,7 +720752,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -720763,14 +720774,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034736 coracoclavicular ligament - + - + FMA @@ -720792,8 +720803,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The inferior longitudinal fasciculus connects the temporal lobe and occipital lobe, running along the lateral walls of the inferior and posterior cornua of the lateral ventricle. The existence of this fasciculus independent from the occipitotemporal fasciculus has been questioned for the human being, such that it has been proposed that the term inferior longitudinal fasciculus be replaced by the term 'occipitotemporal projection'. DHBA:10580 FMA:77632 @@ -720810,24 +720821,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034743 inferior longitudinal fasciculus - + - + - + HBA - + DHBA @@ -720916,7 +720927,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12043 FMA:76976 @@ -720932,14 +720943,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034746 anterior thalamic radiation - + - + DHBA @@ -721071,7 +721082,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12052 FMA:61957 SCTID:362363008 @@ -721089,14 +721100,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034749 retrolenticular part of internal capsule - + - + DHBA FMA @@ -721214,7 +721225,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The part of the auditory cortex that is located on the superior temporal gyrus in the temporal lobe and receives point-to-point input from the ventral division of the medial geniculate complex. DHBA:10236 FMA:272953 @@ -721230,14 +721241,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034751 primary auditory cortex - + - + cjm @@ -721290,7 +721301,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The part of the auditory cortex that receive more diffuse input from the belt areas of the medial geniculate complex. DHBA:10239 @@ -721308,14 +721319,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034752 secondary auditory cortex - + - + cjm @@ -721432,8 +721443,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The occipitofrontal fasciculus passes backward from the frontal lobe, along the lateral border of the caudate nucleus, and on the medial aspect of the corona radiata; its fibers radiate in a fan-like manner and pass into the occipital and temporal lobes lateral to the posterior and inferior cornua. DHBA:10588 HBA:9269 @@ -721444,24 +721455,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034754 occipitofrontal fasciculus - + - + - + HBA - + DHBA @@ -721914,7 +721925,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The anterior extremity of the Parahippocampal gyrus is recurved in the form of a hook, the uncus, which is separated from the apex of the temporal lobe by a slight fissure, the incisura temporalis. Although superficially continuous with the hippocampal gyrus, the uncus forms morphologically a part of the rhinencephalon. The term uncus was coined by Felix Vicq dbAzyr (1748b1794). DHBA:12165 @@ -721931,14 +721942,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( uncus of parahippocampal gyrus - + - + DHBA @@ -721974,21 +721985,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:266441267 uberon CA1U UBERON:0034774 uncal CA1 - + - + DHBA @@ -722005,21 +722016,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:266441311 uberon CA2U UBERON:0034775 uncal CA2 - + - + DHBA @@ -722036,21 +722047,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:266441355 uberon CA3U UBERON:0034776 uncal CA3 - + - + DHBA @@ -722067,21 +722078,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:11275 uberon CA1R UBERON:0034777 rostral CA1 - + - + DHBA @@ -722098,21 +722109,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:11285 uberon CA2R UBERON:0034778 rostral CA2 - + - + DHBA @@ -722129,21 +722140,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:11295 uberon CA3R UBERON:0034779 rostral CA3 - + - + DHBA @@ -722160,21 +722171,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:11280 uberon CA1C UBERON:0034780 caudal CA1 - + - + DHBA @@ -722191,21 +722202,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:11290 uberon CA2C UBERON:0034781 caudal CA2 - + - + DHBA @@ -722222,21 +722233,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:11301 uberon CA3C UBERON:0034782 caudal CA3 - + - + DHBA @@ -724171,8 +724182,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + @@ -724186,24 +724197,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034875 future pituitary gland - + - + - + EMAPA - + Wikipedia @@ -724230,8 +724241,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + @@ -724247,24 +724258,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034876 future neurohypophysis - + - + - + EMAPA - + EMAPA @@ -724409,8 +724420,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + NLX:152661 uberon primary motor cortex lamina 1 @@ -724418,24 +724429,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034888 primary motor cortex layer 1 - + - + - + NIFSTD - + NIFSTD @@ -724457,7 +724468,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The posterior parietal cortex is a portion of the parietal lobe which manipulates mental images, and integrates sensory and motor portions of the brain. Some sources say that it consists of Brodmann area 5 and Brodmann area 7. Other sources say it is only area 7. DHBA:10214 Wikipedia:Posterior_parietal_cortex @@ -724466,14 +724477,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034889 posterior parietal cortex - + - + DHBA @@ -724736,7 +724747,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:10386 NLX:54921 @@ -724749,14 +724760,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034894 lateral nucleus of stria terminalis - + - + NIFSTD @@ -724797,7 +724808,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:10385 NLX:80623 medial subdivision of BNST @@ -724808,14 +724819,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034895 medial nucleus of stria terminalis - + - + NIFSTD @@ -724851,8 +724862,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + DHBA:266441591 FMA:62071 MBA:892 @@ -724865,24 +724876,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034896 ansa peduncularis - + - + - + FMA - + DHBA @@ -724920,12 +724931,12 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + The thickened ridge of bone that contains the tooth sockets on the premaxilla. AAO:0000397 pars dentalis of premaxilla @@ -724933,14 +724944,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034898 alveolar ridge of premaxilla - + - + AAO @@ -725337,7 +725348,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12184 DMBA:16585 neuronames:1176 @@ -725348,14 +725359,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034910 medial pretectal nucleus - + - + ISBN:0471888893 @@ -725386,7 +725397,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + consider merging with olivary; however, Butler and Hodos treat as distinct within Eutherians DHBA:12187 EMAPA:37920 @@ -725398,14 +725409,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034918 anterior pretectal nucleus - + - + ISBN:0471888893 @@ -725726,7 +725737,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The arcuate artery of the foot (metatarsal artery) arises a little anterior to the lateral tarsal artery; it passes lateralward, over the bases of the metatarsal bones, beneath the tendons of the Extensor digitorum brevis, its direction being influenced by its point of origin; and its anastomoses with the lateral tarsal and lateral plantar arteries. This vessel gives off the second, third, and fourth dorsal metatarsal arteries. It is not present in all individuals. FMA:44594 @@ -725737,14 +725748,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( arcuate artery of foot - + - + FMA @@ -725868,7 +725879,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -725880,14 +725891,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034930 auricular feather - + - + EDITOR_NOTE request more specific terms from PATO @@ -725916,8 +725927,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + @@ -725954,24 +725965,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034931 perforant path - + - + - + HBA - + DHBA @@ -726143,7 +726154,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Corrugated anterior region of ciliary body where ciliary processes arise. FMA:58431 SCTID:280859006 @@ -726153,14 +726164,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034935 pars plicata of ciliary body - + - + FMA @@ -726189,7 +726200,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Flattened posterior region of ciliary body. FMA:58480 NCIT:C33219 @@ -726200,14 +726211,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034936 pars plana of ciliary body - + - + FMA @@ -726844,7 +726855,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A population of lymphatic endothelial cell precursors that will form the lymph vessels. NCIT:C34262 UMLS:C1514424 @@ -726853,14 +726864,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034953 embryonic lymph sac - + - + VHOG @@ -727069,7 +727080,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -727092,14 +727103,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( superficial epigastric artery - + - + FMA @@ -727280,7 +727291,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A nonchromaffin paraganglion located in the wall of the jugular bulb. FMA:50848 MESH:D005924 @@ -727294,14 +727305,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034972 jugular body - + - + cjm @@ -727330,7 +727341,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A cluster of neuroendocrine cells derived from neural crest. Paraganglia may be chromaffin or nonchromaffin. corresponding portion of CL needs fixed FMA:15648 @@ -727341,7 +727352,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034978 paraganglion (generic) - + @@ -727354,7 +727365,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Wikipedia @@ -727404,20 +727415,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + bulb of jugular vein uberon UBERON:0034980 jugular bulb - + - + FMA @@ -727755,7 +727766,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:35125 FMA:77608 MA:0002918 @@ -727769,14 +727780,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034989 amygdalopiriform transition area - + - + MA @@ -727810,8 +727821,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + DMBA:16000 EMAPA:35128 @@ -727823,24 +727834,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( anterior cortical amygdaloid nucleus - + - + - + EMAPA - + DMBA @@ -727857,8 +727868,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + EMAPA:35165 FMA:84344 HBA:4427 @@ -727867,24 +727878,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034993 basal ventral medial nucleus of thalamus - + - + - + HBA - + EMAPA @@ -728047,7 +728058,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DMBA:15999 EMAPA:35699 MA:0002929 @@ -728062,14 +728073,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034999 posterolateral cortical amygdaloid nucleus - + - + EMAPA @@ -728116,7 +728127,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DMBA:15950 EMAPA:35700 MA:0002930 @@ -728130,14 +728141,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035001 posteromedial cortical amygdaloid nucleus - + - + EMAPA @@ -728178,20 +728189,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:35702 uberon UBERON:0035004 preputial swelling - + - + EMAPA @@ -728212,21 +728223,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:29220 uberon prepuce of male UBERON:0035005 preputial swelling of male - + - + EMAPA @@ -728253,21 +728264,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:30478 uberon prepuce of female UBERON:0035006 preputial swelling of female - + - + EMAPA @@ -729239,8 +729250,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The superior rectal artery (superior hemorrhoidal artery) is an artery that descends into the pelvis to supply blood to the rectum. FMA:14832 @@ -729258,24 +729269,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb - + - + - + FMA - + FMA @@ -729332,7 +729343,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The deep temporal arteries, two in number, anterior and posterior, ascend between the Temporalis and the pericranium. They supply the muscle, and anastomose with the middle temporal artery. The anterior communicates with the lacrimal artery by means of small branches which perforate the zygomatic bone and great wing of the sphenoid. FMA:49742 SCTID:147965009 @@ -729346,14 +729357,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035041 deep temporal artery - + - + FMA @@ -729405,7 +729416,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The middle temporal artery arises immediately above the zygomatic arch, and, perforating the temporal fascia, gives branches to the Temporalis, anastomosing with the deep temporal branches of the internal maxillary. It occasionally gives off a zygomaticoC6rbital branch, which runs along the upper border of the zygomatic arch, between the two layers of the temporal fascia, to the lateral angle of the orbit. FMA:49666 @@ -729417,14 +729428,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( middle temporal artery - + - + FMA @@ -729492,38 +729503,38 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + Deepest layer of olfactory cortex. NLX:152611 uberon UBERON:0035044 olfactory cortex layer 3 - + - + - + nlx - + NIFSTD @@ -730057,12 +730068,12 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + In Anolis, This muscle mostly originates via fleshy fibers from the ventrolateral aspect of the ilium and the ventral aspect of the transverse processes of Ca1-8 (note: the origin from Ca1 is tendinous). The fibers of m. ischiocaudalis join those of m. cocygeus inferior in the ventral midline at the level of Ca3-4 (in females) and Ca5-6 (in males)[PMID:22753107] M. caudofemoralis brevis @@ -730071,14 +730082,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035082 caudofemoralis brevis - + - + fossa on lower edge of ilium @@ -731036,7 +731047,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The perineal raphe extends from the anus, through the mid-line of the scrotum (scrotal raphe) and upwards through the posterior mid-line aspect of the penis (penile raphe). It is the result of a fetal developmental phenomenon whereby the scrotum (the developmental equivalent of the labia in females) and penis close toward the midline and fuse. The resulting ridge of tissue is evident as the perineal raphe FMA:20244 @@ -731048,14 +731059,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035106 raphe of perineum - + - + Wikipedia @@ -731092,7 +731103,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The temporal fascia covers the Temporalis muscle. It is a strong, fibrous investment, covered, laterally, by the Auricularis anterior and superior, by the galea aponeurotica, and by part of the Orbicularis oculi. The superficial temporal vessels and the auriculotemporal nerve cross it from below upward. Above, it is a single layer, attached to the entire extent of the superior temporal line; but below, where it is fixed to the zygomatic arch, it consists of two layers, one of which is inserted into the lateral, and the other into the medial border of the arch. A small quantity of fat, the orbital branch of the superficial temporal artery, and a filament from the zygomatic branch of the maxillary nerve, are contained between these two layers. It affords attachment by its deep surface to the superficial fibers of the Temporalis. FMA:53996 MFMO:0000105 @@ -731105,14 +731116,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Request new term but the definition needs revision. temporalis fascia - + - + cjm @@ -731330,7 +731341,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:617 mediodorsal nucleus of the thalamus, central part uberon @@ -731338,14 +731349,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035113 central part of mediodorsal nucleus of the thalamus - + - + MBA @@ -731368,7 +731379,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:626 mediodorsal nucleus of the thalamus, lateral part uberon @@ -731376,14 +731387,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035114 lateral part of mediodorsal nucleus of the thalamus - + - + MBA @@ -731968,21 +731979,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:32631 hand cartilage condensation uberon UBERON:0035128 manus cartilage element - + - + EMAPA-modified @@ -732020,21 +732031,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:32657 foot cartilage condensation uberon UBERON:0035129 pes cartilage element - + - + EMAPA-modified @@ -732051,9 +732062,9 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - - + + + @@ -732073,34 +732084,34 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035130 auditory ossicle endochondral element - + - + - + - + MA - + PMID:11523816 - + PMID:11237469 https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -732319,20 +732330,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:36342 uberon UBERON:0035142 preputial space of male - + - + EMAPA @@ -733310,7 +733321,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Clinical esophageal segment composed of smooth muscle. It corresponds to the inferior part of the lower third topographic segment of the esophagus. FMA:9397 NCIT:C12252 @@ -733326,14 +733337,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035177 abdominal part of esophagus - + - + FMA @@ -733387,7 +733398,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The sigmoid arteries, two or three in number, run obliquely downward and to the left behind the peritoneum and in front of the Psoas major, ureter, and internal spermatic vessels. Their branches supply the lower part of the descending colon, the iliac colon, and the sigmoid or pelvic colon; anastomosing above with the left colic, and below with the superior hemorrhoidal artery. FMA:14830 @@ -733403,14 +733414,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb - + - + FMA @@ -733513,7 +733524,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The plantar metatarsal arteries (digital branches) are four in number, and run forward between the metatarsal bones and in contact with the Interossei. Each divides into a pair of plantar digital arteries which supply the adjacent sides of the toes. Near their points of division each sends upward an anterior perforating branch to join the corresponding dorsal metatarsal artery. The first plantar metatarsal artery (arteria princeps hallucis) springs from the junction between the lateral plantar and deep plantar arteries and sends a digital branch to the medial side of the first toe. The digital branch for the lateral side of the fifth toe arise from the lateral plantar artery near the base of the fifth metatarsal bone. FMA:43956 NCIT:C52743 @@ -733525,14 +733536,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035195 plantar metatarsal artery - + - + FMA @@ -733615,7 +733626,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -733637,14 +733648,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035201 gastrocolic ligament - + - + FMA @@ -733855,7 +733866,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Zone of esophagus located in the thorax. FMA:9396 NCIT:C12251 @@ -733869,14 +733880,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035216 thoracic part of esophagus - + - + FMA @@ -734396,7 +734407,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A structure composed of adipose tissue lying above the pubic bone of adult women, anterior to the symphysis pubis. The mons pubis forms the anterior portion of the vulva, and limits the perineal region proximally and anteriorly. In humans, the mons pubis divides into the labia majora on either side of the furrow, known as the cleft of venus, that surrounds the labia minora, clitoris, vaginal opening, and other structures of the vulval vestibule. The fatty tissue of the mons veneris is sensitive to estrogen, causing a distinct mound to form with the onset of puberty. This pushes the forward portion of the labia majora out and away from the pubic bone The size of the mons pubis varies with the general level of hormone and body fat. After puberty it is covered with pubic hair and enlarges. @@ -734412,14 +734423,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035258 mons pubis - + - + FMA @@ -734603,7 +734614,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The superior thoracic artery (highest thoracic artery) is a small vessel normally arising from the first division of the axillary artery, but may arise from the thoracoacromial artery, itself a branch of the second division of the axillary artery. Running forward and medialward along the upper border of the pectoralis minor, the superior thoracic artery passes between it and the pectoralis major to the side of the chest. It supplies branches to the first and second intercostal spaces as well as to the superior portion of serratus anterior. It anastomoses with the internal mammary and intercostal arteries. FMA:22668 @@ -734616,14 +734627,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( superior thoracic artery - + - + FMA @@ -734780,7 +734791,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An extension of the tissue of the breast which extends into the axilla. FMA:58072 NCIT:C12305 @@ -734796,14 +734807,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035289 axillary tail of breast - + - + ncithesaurus @@ -734930,7 +734941,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An elevated zone of the sella turcica behind the chiasmatic groove[WP,modified]. FMA:54719 NCIT:C45911 @@ -734941,14 +734952,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035298 tuberculum sellae - + - + FMA @@ -735584,7 +735595,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The aspect of the kidney facing the abdominal cavity. FMA:15589 @@ -735597,14 +735608,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035368 anterior surface of kidney - + - + ncithesaurus @@ -735734,7 +735745,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + One of the semi-lunar transverse folds of the rectal wall that protrude into the anal canal. Their use seems to be to support the weight of fecal matter, and prevent its urging toward the anus, which would produce a strong urge to defecate FMA:15722 @@ -735748,14 +735759,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035377 transverse fold of rectum - + - + ncithesaurus @@ -735915,7 +735926,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -735943,14 +735954,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb - + - + ncithesaurus @@ -736224,7 +736235,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The diaphragma sellae or sellar diaphragm is the circular fold of dura mater that almost completely roofs the fossa hypophyseos in the sphenoid bone of the skull. It retains the pituitary gland in the fossa hypophyseos, with only the infundibulum of the pituitary gland passing through it. FMA:78540 NCIT:C32459 @@ -736236,14 +736247,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035416 diaphragma sellae - + - + ncithesaurus @@ -736295,7 +736306,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Branch of left coronary artery which runs perpendicular to the anterior interventricular branch of the left coronary artery on the left side of the interventricular sulcus and supplies the left side of the heart. FMA:3895 @@ -736312,14 +736323,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( circumflex branch of left coronary artery https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb - + - + FMA @@ -736356,7 +736367,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A small triangular process of dura matter beginning at the internal occipital crest just beneath the tentorium and projecting forward. FMA:83974 NCIT:C32584 @@ -736368,14 +736379,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035425 falx cerebelli - + - + ncithesaurus @@ -736419,8 +736430,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The parietal pleura that lines the mediastinum. FMA:9736 NCIT:C94820 @@ -736434,24 +736445,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035431 mediastinal pleura - + - + - + FMA - + FMA @@ -736591,7 +736602,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The lowest part of the prostate gland adjacent to the superior fascia of the urogenital diaphragm. FMA:19594 NCIT:C13087 @@ -736604,14 +736615,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( apex of prostate https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb - + - + ncithesaurus @@ -736671,7 +736682,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Muscular components of the deep perineal pouch. consider obsoletion FMA:19734 @@ -736682,7 +736693,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035445 urogenital diaphragm - + @@ -736695,7 +736706,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + ncithesaurus @@ -736711,7 +736722,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Clinical esophageal segment composed of skeletal muscle. It corresponds to the superior part of the upper third topographic segment of the esophagus. FMA:9395 NCIT:C12250 @@ -736726,14 +736737,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035450 cervical part of esophagus - + - + FMA @@ -736784,7 +736795,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:64171 NCIT:C32935 SCTID:361949007 @@ -736795,14 +736806,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035453 laryngeal ventricle - + - + ncithesaurus @@ -736926,7 +736937,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The angled junction where the diaphragm meets the chest wall. FMA:11355 NCIT:C32393 @@ -736938,14 +736949,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035468 costodiaphragmatic recess - + - + ncithesaurus @@ -737423,7 +737434,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Free nerve endings are widely distributed throughout the body, and are found as branches of unmyelinated, or lightly myelinated fibres grouped in bundles beneath the epithelium. As they penetrate the epithelium, they lose their myelin, and branch among the epithelial cells. Branches of one nerve may cover a wide area and overlap the territories of other nerves. The free nerve endings detect pain, touch, pressure and temperature, and are associated with C fibres. FMA:84005 @@ -737436,7 +737447,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035501 unencapsulated tactile receptor - + @@ -737449,7 +737460,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + ncithesaurus @@ -737916,7 +737927,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The middle portion of the gallbladder which is distal to the gallbladder neck and proximal to the gallbladder fundus. FMA:14537 NCIT:C32647 @@ -737928,14 +737939,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035536 body of gallbladder - + - + FMA @@ -737981,7 +737992,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Any of several arteries that arise from the aorta and supply blood to the esophagus. FMA:4149 @@ -737995,7 +738006,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( esophageal artery - + @@ -738008,7 +738019,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -738681,21 +738692,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An unjointed, rod-like bony or cartilaginous structures that extend from distal limb joints in tetrapods. in some mammals this is found in a cartilaginous state, and articulates with the lateral border of the carpus. uberon UBERON:0035561 styliform element - + - + DOI:10.1038/nature14423 @@ -739075,7 +739086,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A nucleus medial to the central pretectal nucleus in the periventricular zone. @@ -739089,14 +739100,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Can be subdivided into dorsal and ventral[ISBN:0471888893] periventricular pretectal nucleus - + - + ZFA @@ -739323,7 +739334,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nucleus geniculatus pretectalis @@ -739332,14 +739343,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Receives retinal input nucleus geniculatus of pretectum - + - + ISBN:0471888893 @@ -739368,7 +739379,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nucleus lentiformis mesencephali @@ -739377,14 +739388,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Receives retinal input nucleus lentiformis of pretectum - + - + ISBN:0471888893 @@ -739413,7 +739424,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nucleus posteriodorsalis @@ -739422,14 +739433,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Receives retinal input nucleus posteriodorsalis of pretectum - + - + ISBN:0471888893 @@ -739458,21 +739469,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + uberon nucleus lentiformis thalami UBERON:0035583 nucleus lentiformis thalamus - + - + ISBN:0471888893 @@ -739495,21 +739506,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + uberon ventral pretectal nucleus UBERON:0035584 ventral pretectal nucleus (sauropsida) - + - + ISBN:0471888893 @@ -739531,7 +739542,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + griseum tectalis uberon tectal gray @@ -739539,14 +739550,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035585 tectal gray nucleus (Testudines) - + - + ISBN:0471888893 @@ -739593,19 +739604,19 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + uberon UBERON:0035587 nucleus pretectalis diffusus - + - + ISBN:0471888893 @@ -739622,20 +739633,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A nuclear complex in the ventral pretectal region. uberon UBERON:0035588 subpretectal complex of Aves - + - + ISBN:0471888893 @@ -739685,20 +739696,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + uberon UBERON:0035591 lateral spiriform nucleus - + - + ISBN:0471888893 @@ -739714,19 +739725,19 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + uberon UBERON:0035592 medial spiriform nucleus - + - + ISBN:0471888893 @@ -739736,20 +739747,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nucleus circularis uberon UBERON:0035593 nucleus circularis of pretectum - + - + ISBN:0471888893 @@ -739835,7 +739846,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A group of cells located in the central part of the anterior hypothalamic nucleus in the anterior hypothalamic region of the rat ( Swanson-2004 ) and the mouse ( Paxinos-2001 ). Functionally it belongs to the magnocellular neuroendocrine cell groups of the subcortical motor system ( Swanson-2004 ). nucleus circularis MBA:432 @@ -739847,14 +739858,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( group of magnocellular elements arranged in a ring around a capillary bed. The cells are predominantly monopolar, tightly packed, and are flattened at the outer border of the ring. The entire nucleus is surrounded or encapsulated by myelinated fibers, hypothesized to be an osmoreceptor[PMID:974791] circular nucleus of antherior hypothalamic nucleus - + - + MBA @@ -740326,7 +740337,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The innermost layer of the outer root sheath. It contains cells that are morphologically and biochemically different from the inner root sheath and outer root sheath. The cells of the companion layer are more flattened than the other cells of the outer root sheath and do not contain glycogen. In addition, a novel human type II cytokeratin, K6hf, is specifically expressed in the companion layer of the hair follicle BTO:0003970 @@ -740334,14 +740345,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035609 outer root sheath companion layer - + - + BTO @@ -740449,7 +740460,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -740477,14 +740488,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035612 nasal turbinal - + - + ISBN:0073040584 @@ -741049,7 +741060,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A branch of the facial nerve that innervates the posterior auricular and intrinsic muscles of the auricle and, through its occipital branch, innervates the occipital belly of the occipitofrontal muscle. FMA:53278 SCTID:280277006 @@ -741060,14 +741071,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035647 posterior auricular nerve - + - + FMA Wikipedia @@ -741113,7 +741124,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Any nerve that innervates the pinna. EMAPA:36513 MA:0001232 @@ -741122,14 +741133,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035648 nerve innervating pinna - + - + FMA @@ -741589,7 +741600,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -741606,14 +741617,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035677 primary yolk sac cavity - + - + EHDAA2 @@ -741771,7 +741782,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2:0004525 FMA:280884 capillary plexus of liver @@ -741781,14 +741792,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035756 capillary network of liver - + - + EHDAA2 @@ -741932,7 +741943,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -741948,14 +741959,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035763 cavity of cardiac chamber - + - + FMA @@ -742537,7 +742548,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A parasympathetic ganglion located on the short ciliary nerve differentiated from the main ciliary ganglion by virtue of the fact that it had no root derived directly from the inferior trunk of the oculomotor nerve and it never attaches to this nerve. tested for and found to be present in pig, sika deer, domestic sheep, horse, cat, fox, racoon dog, marten, rat, rabbit, crab-eating macaque, japanese macaque and human[PMID:2802184] @@ -742545,14 +742556,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035776 accessory ciliary ganglion - + - + http://orcid.org/0000-0001-9114-8737 @@ -742660,8 +742671,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + @@ -742682,24 +742693,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035785 telencephalic song nucleus HVC - + - + - + Wikipedia - + GOC:mr @@ -743084,7 +743095,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -743098,7 +743109,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035806 Hensen stripe - + @@ -743111,7 +743122,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + cjm @@ -743139,21 +743150,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A nucleus in the basal ganglion of songbirds. area X uberon UBERON:0035807 area X of basal ganglion - + - + GOC:mr @@ -743172,8 +743183,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + A specialized nucleus within the intermediate archistriatum of songbirds, required for and active during the production of learned song. BTO:0003366 uberon @@ -743183,24 +743194,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035808 robust nucleus of arcopallium - + - + - + BTO - + GOC:cjm @@ -743738,8 +743749,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + Artery that runs from right to left along the greater curvature of the stomach, between the layers of the greater omentum, anastomosing with the left gastroepiploic branch of the splenic artery. FMA:14781 @@ -743758,24 +743769,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( right gastroepiploic artery - + - + - + FMA - + FMA @@ -743842,7 +743853,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Artery that runs from left to right along the greater curvature of the stomach, between the layers of the greater omentum, and anastomoses with the right gastroepiploic. FMA:14796 @@ -743862,14 +743873,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( left gastroepiploic artery - + - + FMA @@ -743943,8 +743954,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + @@ -743960,24 +743971,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035831 costal diaphragm - + - + - + PMID:23586979 - + PMID:23586979 @@ -744006,14 +744017,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + @@ -744034,24 +744045,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035832 caval sphincter - + - + - + left - + Pinnipedia may also be in whales @@ -744725,7 +744736,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:1070 NLX:157671 uberon @@ -744734,14 +744745,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035872 primary somatosensory area barrel field layer 5 - + - + MBA NIFSTD @@ -744765,7 +744776,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:981 NLX:157672 uberon @@ -744773,14 +744784,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035873 primary somatosensory area barrel field layer 1 - + - + MBA NIFSTD @@ -744798,7 +744809,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:201 NLX:157673 uberon @@ -744807,14 +744818,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035874 primary somatosensory area barrel field layer 2/3 - + - + MBA NIFSTD @@ -744838,7 +744849,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:1062 NLX:157674 uberon @@ -744847,14 +744858,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035875 primary somatosensory area barrel field layer 6b - + - + MBA NIFSTD @@ -744878,7 +744889,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:1038 NLX:157675 uberon @@ -744887,14 +744898,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035876 primary somatosensory area barrel field layer 6a - + - + MBA NIFSTD @@ -744918,7 +744929,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:1047 NLX:157676 uberon @@ -744927,14 +744938,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035877 primary somatosensory area barrel field layer 4 - + - + MBA NIFSTD @@ -744958,21 +744969,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The bone region of the epiphysis that provides underlying mechanical and physiological support for the cartilage of joint articular surfaces. subchondral bone uberon UBERON:0035878 subchondral region of epiphysis - + - + MGI:csmith @@ -745363,14 +745374,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:1011 uberon AUDd UBERON:0035885 dorsal auditory area - + @@ -745383,7 +745394,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -745400,14 +745411,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:22 uberon PTLp UBERON:0035886 posterior parietal association areas - + @@ -745420,7 +745431,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -745437,14 +745448,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:312782628 uberon VISpor UBERON:0035890 postrhinal area - + @@ -745457,7 +745468,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -745474,14 +745485,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:33 uberon VISp6a UBERON:0035892 primary visual area, layer 6a - + @@ -745494,7 +745505,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -745511,14 +745522,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:394 uberon VISam UBERON:0035893 anteromedial visual area - + @@ -745531,7 +745542,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -745548,14 +745559,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:402 uberon VISal UBERON:0035894 anterolateral visual area - + @@ -745568,7 +745579,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -745585,14 +745596,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:409 uberon VISl UBERON:0035895 lateral visual area - + @@ -745605,7 +745616,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -745622,14 +745633,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:425 uberon VISpl UBERON:0035897 posterolateral visual area - + @@ -745642,7 +745653,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -745659,14 +745670,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:533 uberon VISpm UBERON:0035900 posteromedial visual area - + @@ -745679,7 +745690,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -745696,14 +745707,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:721 uberon VISp4 UBERON:0035904 primary visual area, layer 4 - + @@ -745716,7 +745727,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -745733,14 +745744,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:778 uberon VISp5 UBERON:0035906 primary visual area, layer 5 - + @@ -745753,7 +745764,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -745770,14 +745781,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:821 uberon VISp2/3 UBERON:0035907 primary visual area, layer 2/3 - + @@ -745790,7 +745801,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -745807,14 +745818,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:233 uberon VISal5 UBERON:0035908 anterolateral visual area, layer 5 - + @@ -745827,7 +745838,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -745844,14 +745855,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:257 uberon VISpm6a UBERON:0035909 posteromedial visual area, layer 6a - + @@ -745864,7 +745875,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -745881,14 +745892,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:312782640 uberon VISpor4 UBERON:0035911 postrhinal area, layer 4 - + @@ -745901,7 +745912,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -745918,14 +745929,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:417 uberon VISrl UBERON:0035912 rostrolateral visual area - + @@ -745938,7 +745949,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -745955,14 +745966,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:433 uberon VISam5 UBERON:0035913 anteromedial visual area, layer 5 - + @@ -745975,7 +745986,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -745992,14 +746003,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:501 uberon VISpm4 UBERON:0035914 posteromedial visual area, layer 4 - + @@ -746012,7 +746023,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -746029,14 +746040,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:573 uberon VISl4 UBERON:0035915 lateral visual area, layer 4 - + @@ -746049,7 +746060,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -746066,14 +746077,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:613 uberon VISl5 UBERON:0035916 lateral visual area, layer 5 - + @@ -746086,7 +746097,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -746103,14 +746114,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:678 uberon AUDd4 UBERON:0035917 dorsal auditory area, layer 4 - + @@ -746123,7 +746134,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -746140,14 +746151,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:74 uberon VISl6a UBERON:0035918 lateral visual area, layer 6a - + @@ -746160,7 +746171,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -746177,14 +746188,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:869 uberon VISpl4 UBERON:0035919 posterolateral visual area, layer 4 - + @@ -746197,7 +746208,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -746214,14 +746225,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:312782616 uberon VISrl5 UBERON:0035920 rostrolateral area, layer 5 - + @@ -746234,7 +746245,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -746341,7 +746352,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The spreading out of the fibers of the corpus callosum in the centrum semiovale of each cerebral hemisphere. DHBA:12026 FMA:77693 @@ -746358,7 +746369,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035924 radiation of corpus callosum - + @@ -746371,7 +746382,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA @@ -746429,7 +746440,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:13227 FMA:83779 HBA:9399 @@ -746455,7 +746466,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035925 central sulcus of insula - + @@ -746468,7 +746479,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA @@ -746785,7 +746796,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12082 FMA:277107 HBA:265505286 @@ -746794,14 +746805,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035931 sagittal stratum - + - + DHBA @@ -746818,8 +746829,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + FMA:273508 HBA:4071 @@ -746834,11 +746845,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb - + - + @@ -746851,13 +746862,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA - + FMA @@ -746892,7 +746903,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The junction of the precentral gyrus and postcentral gyrus on the medial surface of the cerebral cortex. It lies across the boundary between the frontal lobe and the parietal lobe. BTO:0005601 FMA:77534 @@ -746906,7 +746917,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035933 paracentral lobule - + @@ -746919,7 +746930,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -746942,8 +746953,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + FMA:273511 HBA:4125 @@ -746954,11 +746965,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( posterior segment of paracentral lobule - + - + @@ -746971,13 +746982,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA - + FMA @@ -747050,8 +747061,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The arcuate fasciculus (Latin, curved bundle) is the neural pathway connecting the posterior part of the temporoparietal junction with the frontal cortex in the brain and is now considered as part of the Superior longitudinal fasciculus. DHBA:10569 FMA:276650 @@ -747070,24 +747081,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035937 arcuate fasciculus - + - + - + FMA - + DHBA @@ -747156,7 +747167,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12728 FMA:72611 HBA:265505538 @@ -747171,7 +747182,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035938 amiculum of inferior olive - + @@ -747184,7 +747195,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA @@ -747260,7 +747271,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:70663 HBA:9588 neuronames:729 @@ -747276,7 +747287,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035940 central medullary reticular nuclear complex - + @@ -747289,7 +747300,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA @@ -747622,7 +747633,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -747638,14 +747649,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035956 epididymal lumen - + - + FMA @@ -747810,7 +747821,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Supravaginal portion of cervix: the part of the cervix uteri that does not protrude into the vagina. BTO:0001851 @@ -747820,14 +747831,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035962 supravaginal part of cervix - + - + FMA @@ -748006,7 +748017,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The perforated part of the sclera through which pass the axons of the retinal ganglion cells. BTO:0004277 @@ -748020,7 +748031,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( scleral lamina cribrosa - + @@ -748033,7 +748044,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BTO @@ -748069,8 +748080,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The mucous membrane apical to the attached gingiva. BTO:0004046 FMA:289360 @@ -748078,24 +748089,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035967 alveolar mucosa - + - + - + BTO - + BTO @@ -748241,7 +748252,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + On the medial wall of the posterior cornu of the lateral ventricle is a longitudinal eminence, the calcar avis (hippocampus minor), which is an involution of the ventricular wall produced by the calcarine fissure. It is sometimes visible on ultrasonogram. BTO:0004691 DHBA:12095 @@ -748264,14 +748275,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035970 calcar avis of the lateral ventricle - + - + BTO @@ -748355,7 +748366,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Division of subicular cortex characterized by projections from the anterodorsal thalamic nucleus and to a lesser extent the anteroventral nucleus, bordered ventrally and laterally by the presubiculum and dorsally and medially by the retrosplenial granular a cortex.. The border is characterized by an abrupt change in the cyto- and chemoarchitecture. MBA:1037 NLX:144245 @@ -748366,7 +748377,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035971 postsubiculum - + @@ -748379,7 +748390,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -748408,7 +748419,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A group of nerve cells that bridges the midline of the thalamus between the anterodorsal nucleus of the thalamus of the left and right sides. According to Crosby (1962), it is more developed and consistently present in rodents than in primates (adapted from Brain Info). MBA:1113 NLX:144468 @@ -748424,7 +748435,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035972 interanterodorsal nucleus of the thalamus - + @@ -748437,7 +748448,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -748611,7 +748622,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:27 NLX:144470 neuronames:1956 @@ -748623,7 +748634,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035975 intergeniculate leaflet of the lateral geniculate complex - + @@ -748636,7 +748647,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -749027,7 +749038,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A group of cells that fluoresce for dopamine and are distributed in clusters that, in the primate, are ventral and medial to the mammillothalamic tract of the hypothalamus; a few extend into the reuniens nucleus of the thalamus (Felten-1983). In the mouse A13 is located ventral to the mammillothalamic tract of the thalamus in the zona incerta (adapted from Brain Info). MBA:796 NLX:91101 @@ -749041,14 +749052,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036007 A13 dopaminergic cell group - + - + MBA @@ -749220,7 +749231,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA:9483 MBA:580 NLX:144476 @@ -749234,7 +749245,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036012 nucleus of the brachium of the inferior colliculus - + @@ -749247,7 +749258,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA @@ -749288,7 +749299,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -749321,7 +749332,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( intergluteal cleft - + @@ -749333,7 +749344,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + 2 @@ -749645,7 +749656,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12389 HBA:4730 uberon @@ -749654,7 +749665,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036043 paravermic lobule X - + @@ -749667,7 +749678,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA @@ -749690,7 +749701,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12846 HBA:4706 VIIAf @@ -749700,14 +749711,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036044 cerebellum vermis lobule VIIAf - + - + HBA @@ -749755,7 +749766,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12847 HBA:4707 VIIAt @@ -749765,14 +749776,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036065 cerebellum vermis lobule VIIAt - + - + HBA @@ -749902,7 +749913,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + One of two longitudinal ridges that develop caudal to the pharynx and fuses to give rise to the tracheoesophageal septum. NCIT:C34315 esophagotracheal fold @@ -749910,14 +749921,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036069 tracheoesophageal fold - + - + Wikipedia:Laryngotracheal_groove @@ -750060,20 +750071,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2:0004070 uberon UBERON:0036072 respiratory primordium epithelium - + - + EHDAA2 @@ -750101,21 +750112,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2:0004071 respiratory primordium associated mesenchyme uberon UBERON:0036073 respiratory primordium mesenchyme - + - + EHDAA2 @@ -750131,9 +750142,9 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - - + + + A vein that leaves the vestibule through an individual bone canal running parallel to the vestibular aqueduct up to the dura of the posterior side of the petrosa in the area of the endolymphatic sac. It then opens in the inferior petrosal sinus or the jugular bulb. The vein receives other branches from the bone, dura and sac. FMA:52367 @@ -750144,34 +750155,34 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( vein of vestibular aqueduct - + - + - + - + FMA - + FMA - + FMA @@ -750200,7 +750211,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The meningeal branch of the mandibular nerve (recurrent branch, nervus spinosus) is a branch of the mandibular nerve that supplies the dura mater. FMA:53047 SCTID:280249002 @@ -750213,14 +750224,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036143 meningeal branch of mandibular nerve - + - + FMA @@ -750411,21 +750422,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + uberon UBERON:0036148 orovelar muscle https://github.com/obophenotype/uberon/issues/1264 - + - + to be checked @@ -750691,7 +750702,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A rostral part of the parahippocampal gyrus. Some authors regard it as part of the gyrus underlying the uncus ( Ture-1999 ), others as a synonym for limen insula. DHBA:12166 @@ -750704,7 +750715,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036164 ambient gyrus - + @@ -750717,7 +750728,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA @@ -751367,7 +751378,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The tympanic nerve (nerve of Jacobson) is a branch of the glossopharyngeal nerve found near the ear. FMA:53480 @@ -751383,14 +751394,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( tympanic nerve - + - + FMA @@ -751474,7 +751485,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The most anterior region of the forebrain including both the telencephalon and the hypothalamus in the prosomeric model. DMBA:15567 uberon @@ -751483,7 +751494,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( may contain the optic recess region (ORR) in the new model proposed by Yamamoto et al. 2017 (see https://www.ncbi.nlm.nih.gov/pubmed/28470718) secondary prosencephalon - + @@ -751496,7 +751507,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DMBA DOI:10.1111/dgd.12348 @@ -751561,7 +751572,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The corticobulbar and corticospinal tracts combined. pyramidal tract Wikipedia:Pyramidal_tracts @@ -751569,14 +751580,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036224 corticobulbar and corticospinal tracts - + - + NIFSTD @@ -752360,7 +752371,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The upper part of the larynx, including the epiglottis; the area above the vocal cords. FMA:55476 NCIT:C12279 @@ -752371,14 +752382,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036263 supraglottic part of larynx - + - + FMA @@ -752756,7 +752767,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The anterior and posterior borders of the tonsillar fossa. They are composed of muscle tissue. NCIT:C12236 uberon @@ -752764,14 +752775,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Consider merge with palatopharyngeus tonsillar pillar - + - + NCIT @@ -752790,12 +752801,12 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + Wall of ventricle which is continuous with the wall of aorta. FMA:9556 left ventricular wall @@ -752803,7 +752814,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036285 wall of left ventricle - + @@ -752816,7 +752827,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -752841,12 +752852,12 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + Wall of ventricle which is continuous with the wall of pulmonary trunk. FMA:9533 right ventricular wall @@ -752854,7 +752865,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036286 wall of right ventricle - + @@ -752867,7 +752878,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -752900,7 +752911,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -752912,14 +752923,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036288 anterior wall of left ventricle - + - + FMA @@ -753153,7 +753164,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The upper tract of the renal system. The renal pelvis is the large cavity in the middle of each kidney. Urine drains from each kidney through a long tube called the ureter, into the bladder, where it is stored until it is passed from the body through the urethra. NCIT:C54419 @@ -753164,14 +753175,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( renal pelvis/ureter - + - + NCIT @@ -753336,20 +753347,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:14179 coronary arterial wall uberon UBERON:0036328 wall of coronary artery - + @@ -753362,7 +753373,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -753381,13 +753392,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:14621 appendix wall wall of vermiform appendix @@ -753395,24 +753406,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036337 wall of appendix - + - + - + FMA - + FMA @@ -753437,27 +753448,27 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:14657 gallbladder wall uberon UBERON:0036343 wall of gallbladder - + - + FMA @@ -753476,19 +753487,19 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:15089 brachiocephalic arterial wall uberon UBERON:0036351 wall of brachiocephalic artery - + @@ -753501,7 +753512,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -753520,19 +753531,19 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:15090 subclavian arterial wall uberon UBERON:0036352 wall of subclavian artery - + @@ -753545,7 +753556,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -753564,7 +753575,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -753574,21 +753585,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:15704 anal canal wall uberon UBERON:0036362 wall of anal canal - + - + FMA @@ -753607,19 +753618,19 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:15889 right ureteral wall uberon UBERON:0036375 wall of right ureter - + @@ -753632,7 +753643,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -753651,12 +753662,12 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:15890 left ureteral wall @@ -753665,7 +753676,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( wall of left ureter - + @@ -753678,7 +753689,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -753697,19 +753708,19 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:18211 pulmonary arterial wall uberon UBERON:0036422 wall of pulmonary artery - + @@ -753722,7 +753733,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -753741,14 +753752,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:18303 uterine tube wall wall of oviduct @@ -753757,7 +753768,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036441 wall of fallopian tube - + @@ -753770,7 +753781,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -753795,20 +753806,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:19779 urethral wall uberon UBERON:0036521 wall of urethra - + @@ -753821,7 +753832,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -753840,21 +753851,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:19971 vaginal wall uberon UBERON:0036523 wall of vagina - + @@ -753867,7 +753878,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -753886,19 +753897,19 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:231590 uberon UBERON:0036553 wall of synovial tendon sheath - + @@ -753911,7 +753922,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -753924,25 +753935,25 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:242772 uberon UBERON:0036654 wall of lateral ventricle - + - + FMA @@ -753955,25 +753966,25 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:242774 uberon UBERON:0036655 wall of cerebral aqueduct - + - + FMA @@ -753986,25 +753997,25 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:242776 uberon UBERON:0036656 wall of third ventricle - + - + FMA @@ -754017,25 +754028,25 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:242778 uberon UBERON:0036657 wall of fourth ventricle - + - + FMA @@ -754048,21 +754059,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:242780 wall of central canal uberon UBERON:0036658 wall of central canal of spinal cord - + @@ -754075,7 +754086,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -754094,20 +754105,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:242841 uberon UBERON:0036661 wall of ventricular system of brain - + @@ -754120,7 +754131,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -754133,20 +754144,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:58098 eyeball wall uberon UBERON:0036925 wall of eyeball - + @@ -754159,7 +754170,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -754178,19 +754189,19 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:60069 pharyngotympanic tube wall uberon UBERON:0036990 wall of pharyngotympanic tube - + @@ -754203,7 +754214,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -754222,21 +754233,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:63144 orbit wall uberon UBERON:0037089 wall of orbit - + @@ -754249,7 +754260,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -754268,19 +754279,19 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:66284 common carotid arterial wall uberon UBERON:0037094 wall of common carotid artery - + @@ -754293,7 +754304,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -754312,15 +754323,15 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - - - + + + Wall of organ which has as its parts the endocardium, myocardium , epicardium, and the cardiac septum, surrounded by the pericardial sac proper and is continuous with the walls of the systemic and pulmonary arterial and venous trees. FMA:7274 cardiac wall @@ -754328,15 +754339,15 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0037144 wall of heart - + - + - + @@ -754349,19 +754360,19 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA - + FMA - + FMA @@ -754386,20 +754397,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:79837 membranous labyrinth wall uberon UBERON:0037191 wall of membranous labyrinth - + @@ -754412,7 +754423,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -754431,20 +754442,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:85375 lacrimal ductal wall uberon UBERON:0037237 wall of lacrimal duct - + @@ -754457,7 +754468,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -754476,19 +754487,19 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:19676 male urethral wall uberon UBERON:0037447 wall of male urethra - + @@ -754501,7 +754512,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -754520,19 +754531,19 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + FMA:19780 female urethral wall uberon UBERON:0037455 wall of female urethra - + @@ -754545,7 +754556,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -754786,14 +754797,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The part of the human abdomen below the ribs and above the hips, often narrower than the areas above and below. FMA:228775 uberon UBERON:0037468 waist - + @@ -754806,7 +754817,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + https://orcid.org/0000-0002-2825-0621 @@ -755736,7 +755747,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Gastric lymph node located along the lesser curvature of stomach. FMA:12797 aJCC level 17L node @@ -755745,14 +755756,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0037580 left gastric lymph node - + - + FMA @@ -757156,14 +757167,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Hepatic lymph node located along the common hepatic artery. FMA:277259 uberon UBERON:0038691 common hepatic lymph node - + @@ -757176,7 +757187,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -757266,7 +757277,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Superior pancreatic lymph node located along the proximal segment of splenic artery. FMA:277295 jPS 11p node @@ -757277,7 +757288,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0038695 proximal superior pancreatic lymph node - + @@ -757290,7 +757301,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -758887,14 +758898,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:61235 thyroid node uberon UBERON:0038931 thyroid lymph node - + @@ -758907,7 +758918,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -759385,7 +759396,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The anterior intercostal branches of internal thoracic artery supply the upper five or six intercostal spaces. FMA:10641 intercostal branch of internal thoracic artery @@ -759393,14 +759404,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0039169 anterior intercostal artery - + - + FMA @@ -759422,21 +759433,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:10648 medial mammary branch of perforating branch of internal thoracic artery uberon UBERON:0039170 mammary branch of internal thoracic artery - + - + FMA @@ -759528,21 +759539,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A lower continuation of the vertebral vein and vertebral venous plexus that passes through the foramen of the transverse process of the 7th cervical vertebra and empties into the brachiocephalic vein. FMA:14290 uberon UBERON:0039185 accessory vertebral vein - + - + FMA @@ -759589,21 +759600,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The suprascapular vein is a vein running above the scapula. It empties into the external jugular vein. FMA:14319 uberon UBERON:0039187 suprascapular vein - + - + FMA @@ -759619,21 +759630,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The superior laryngeal vein is a vein which drains the larynx into the superior thyroid vein. FMA:14324 uberon UBERON:0039188 superior laryngeal vein - + - + FMA @@ -759649,7 +759660,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -759663,14 +759674,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0039215 appendicular artery - + - + FMA @@ -759704,7 +759715,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -759720,14 +759731,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb - + - + FMA Wikipedia @@ -759768,20 +759779,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:15395 uberon UBERON:0039228 sigmoid vein - + - + FMA @@ -759856,7 +759867,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + vein ascending the posterior aspect of the body of the pubis to drain into the inferior epigastric vein; this vein frequently (about 20% of patients) serves as an accessory or replaced obturator vein. FMA:21200 accessory obturator vein @@ -759866,14 +759877,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0039256 pubic vein - + - + FMA @@ -759945,20 +759956,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:70346 uberon UBERON:0039260 thyrocervical artery - + - + FMA @@ -760141,21 +760152,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:20886 posterior labial branch of internal pudendal artery uberon UBERON:0039351 posterior labial artery - + - + FMA @@ -760225,7 +760236,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:21267 bulb of penis vein vena bulbi penis @@ -760233,14 +760244,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0039376 penile bulb vein - + - + FMA @@ -760279,21 +760290,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A vein that drains the urethra. FMA:21270 uberon UBERON:0039377 urethral vein - + - + FMA @@ -760326,21 +760337,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:21273 vena bulbi vestibuli uberon UBERON:0039379 vestibular bulb vein - + - + FMA @@ -760405,21 +760416,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A vein that drains the prepuce and skin of the penis, and, running backward in the subcutaneous tissue, inclines to the right or left, and opens into the corresponding superficial external pudendal vein, a tributary of the great saphenous vein.. FMA:21384 uberon UBERON:0039421 superficial dorsal vein of penis - + - + FMA @@ -760479,13 +760490,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:10649 uberon UBERON:0039838 seventh anterior intercostal artery - + @@ -760498,7 +760509,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -760508,13 +760519,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:10650 uberon UBERON:0039839 eighth anterior intercostal artery - + @@ -760527,7 +760538,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -760537,13 +760548,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:10651 uberon UBERON:0039840 ninth anterior intercostal artery - + @@ -760556,7 +760567,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -760716,21 +760727,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:10663 transverse scapular artery uberon UBERON:0039847 suprascapular artery - + - + FMA @@ -760877,14 +760888,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Ovarian vein, each instance of which is a tributary of some inferior vena cava that drains the right pampiniform plexus of some broad ligament. FMA:14342 uberon UBERON:0039856 right ovarian vein - + @@ -760897,7 +760908,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -761310,7 +761321,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -761334,14 +761345,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( mole - + - + ZFA @@ -761778,7 +761789,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -761800,7 +761811,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:1000022 Zymbal's gland - + @@ -761814,7 +761825,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + cjm @@ -761857,7 +761868,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The parenchyma of the spleen, consisting of lymphocytes and macrophages. It lies between the splenic trabecula. Red pulp is the part suffused with blood and white pulp consists of areas of lymphatic tissue where there are sleeves of lymphocytes and macrophages. EMAPA:35805 @@ -761874,14 +761885,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( spleen pulp - + - + FMA @@ -763118,7 +763129,7 @@ Seems out of scope for uberon and/or not very useful as a class. - + Elastoidin fin ray that is slender, sometimes branched distally and present in the embryonic fin fold. Actinotrichia are translucent and exhibit birefringence. This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0000089 @@ -763129,14 +763140,14 @@ Seems out of scope for uberon and/or not very useful as a class. Actinotrichia are required for lepidotrichium development. They are occasionally retained in adult fishes. Further taxon comments from Witten & Huysseune (2007): 'Actinotrichia are found in the embryonic fin fold, along the outer edge of the fin in Actinopterygii, and in the adipose fin in teleosts (Starck 1979; Géraudie and Meunier 1982; Becerra et al. 1983). Only in polypterids has their presence been reported in the joints between adjacent lepidotrichial elements (Géraudie 1988). In the sarcopterygian lineage, actinotrichia are present in coelacanths (Géraudie and Meunier 1980) and in young dipnoans (Arratia et al. 2001).' actinotrichium - + - + PHENOSCAPE:pm @@ -764570,7 +764581,6 @@ Seems out of scope for uberon and/or not very useful as a class. - @@ -770768,7 +770778,7 @@ Seems out of scope for uberon and/or not very useful as a class. - + Hindbrain nucleus in the tegmental region of rhombomere 1. The cells of the nucleus are granular and lie at the ventral border of the cerebellum and brain stem. This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon TAO:0000551 @@ -770777,14 +770787,14 @@ Seems out of scope for uberon and/or not very useful as a class. UBERON:2000551 nucleus lateralis valvulae - + - + michaelerice PMID:2040726 @@ -771619,8 +771629,8 @@ Seems out of scope for uberon and/or not very useful as a class. - - + + Brain structure which is caudally attached to the rostral medulla oblongata and extends into the tectal ventricle. The valvula cerebelli consists of a granular and a molecular layer along with aggregations of large Purkinje and eurydendroid cells and is uniquely present in ray-finned fishes. From Neuroanatomy of the Zebrafish Brain. This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon TAO:0000603 @@ -771631,24 +771641,24 @@ Seems out of scope for uberon and/or not very useful as a class. UBERON:2000603 valvula cerebelli - + - + - + ZFA - + michaelerice PMID:2040726 @@ -773962,7 +773972,6 @@ Not clear that directional labels for optic tract parts are consistent across ta - @@ -782166,7 +782175,7 @@ Seems out of scope for uberon and/or not very useful as a class. - + @@ -782182,14 +782191,14 @@ Seems out of scope for uberon and/or not very useful as a class. UBERON:2001053 future internal carotid artery - + - + EHDAA2 @@ -784535,7 +784544,7 @@ Seems out of scope for uberon and/or not very useful as a class. - + @@ -784549,14 +784558,14 @@ Seems out of scope for uberon and/or not very useful as a class. UBERON:2001200 corpuscles of Stannius - + - + http://jeb.biologists.org/content/177/1/243.short @@ -811668,7 +811677,6 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e - @@ -811715,7 +811723,6 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e - @@ -811755,7 +811762,6 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e - @@ -811804,7 +811810,6 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e - @@ -811885,7 +811890,6 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e - @@ -811926,7 +811930,6 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e - @@ -827792,7 +827795,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - + @@ -827805,7 +827808,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol UBERON:3000519 pseudodentary tooth - + @@ -827817,7 +827820,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - + cjm @@ -829035,7 +829038,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - + @@ -829048,7 +829051,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol UBERON:3000642 maxillopalatine tooth - + @@ -829060,7 +829063,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - + cjm @@ -843021,7 +843024,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - + @@ -843034,14 +843037,14 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol UBERON:3010620 dilatator laryngis - + - + cjm @@ -843431,21 +843434,21 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - + Hyobranchial muscle used in swallowing. This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010650 cephalodorsosubpharyngeus - + - + cjm @@ -864910,7 +864913,7 @@ formulas. Modified from Cooper and Dawson 2009. - + Head segment derived from the second embryonic segment (between the labral and antennal segments). In the larva, this segment includes Bolwig's organ. FBbt:00000005 @@ -864919,14 +864922,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:6000005 insect ocular segment - + - + cjm @@ -865483,21 +865486,21 @@ formulas. Modified from Cooper and Dawson 2009. - + FBbt:00000104 uberon ventral plate UBERON:6000104 insect mesoderm anlage - + - + cjm @@ -865582,7 +865585,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -865598,14 +865601,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:6000128 insect trunk mesoderm - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -865639,20 +865642,20 @@ formulas. Modified from Cooper and Dawson 2009. - + FBbt:00000130 uberon UBERON:6000130 insect visceral mesoderm - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -870939,12 +870942,6 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:6005177 insect chaeta - - - - sensillum chaeticum - FlyBase:FBrf0111704 - @@ -870958,6 +870955,12 @@ formulas. Modified from Cooper and Dawson 2009. FBbt:00005177 + + + + sensillum chaeticum + FlyBase:FBrf0111704 + @@ -870997,14 +871000,14 @@ formulas. Modified from Cooper and Dawson 2009. - + Section of the insect foregut anterior to the esophagus. FBbt:00005380 uberon UBERON:6005380 insect pharynx - + @@ -871017,7 +871020,7 @@ formulas. Modified from Cooper and Dawson 2009. - + FBbt @@ -872571,7 +872574,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -872584,14 +872587,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:6026000 insect trunk mesoderm derivative - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -875579,8 +875582,8 @@ formulas. Modified from Cooper and Dawson 2009. - - + + A collection of Purkinje fibers that receives signals from the right and left bundle branches and innervates the ventricular cardiac muscle. The Purkinje fiber network creates synchronized contractions of the heart ventricles. Purkinje fibre network @@ -875588,11 +875591,11 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8000009 Purkinje fiber network - + - + @@ -875607,7 +875610,7 @@ formulas. Modified from Cooper and Dawson 2009. - + https://github.com/obophenotype/uberon/issues/1785 https://orcid.org/0000-0001-5208-3432 https://orcid.org/0000-0002-9791-0064 @@ -875615,7 +875618,7 @@ formulas. Modified from Cooper and Dawson 2009. - + https://github.com/obophenotype/uberon/issues/1785 https://orcid.org/0000-0001-5208-3432 https://orcid.org/0000-0002-9791-0064 @@ -876077,7 +876080,7 @@ formulas. Modified from Cooper and Dawson 2009. - + The region of the hepatic acinus that is closest to the arterial blood supply and has the highest oxygen concentration. Zone 1 is located in the periportal region of the liver lobule, closest to the portal triad. Hepatocytes in this region are primarily involved in oxidative energy metabolism. @@ -876087,14 +876090,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400001 hepatic acinus zone 1 - + - + PMID:28126520 @@ -876122,7 +876125,7 @@ formulas. Modified from Cooper and Dawson 2009. - + The region of the hepatic acinus immediately surrounding the central veins. This region has the lowest oxygen concentration in the acinus. Zone 3 is located in the centrilobular region of the liver lobule, closest to the central vein. Hepatocytes in this region are the primary location for the biotransformation of drugs. @@ -876134,14 +876137,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400002 hepatic acinus zone 3 - + - + PMID:28126520 @@ -876181,7 +876184,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -876203,14 +876206,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400003 hepatic acinus zone 2 - + - + PMID:28126520 @@ -876274,7 +876277,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -876290,14 +876293,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400006 liver lobule periportal region - + - + PMID:28126520 @@ -876325,7 +876328,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -876341,14 +876344,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400007 liver lobule centrilobular region - + - + PMID:28126520 @@ -876376,7 +876379,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -876398,14 +876401,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400008 liver lobule midzonal region - + - + PMID:28126520 @@ -882887,6 +882890,43 @@ formulas. Modified from Cooper and Dawson 2009. + + + + + + + + + + + + + + + + + + + + + + A craniocervical region that is part of an embryo. + + 2024-09-12T14:40:00Z + uberon + UBERON:8450003 + embryonic craniocervical region + + + + + A craniocervical region that is part of an embryo. + https://orcid.org/0000-0002-6095-8718 + + + + @@ -890115,9 +890155,11 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the segmental pulmonary veins and drains oxygenated blood from a subsegment of the lung. + 2024-06-06T09:53:48Z FMA:9413 + subsegmental pulmonary vein @@ -890147,9 +890189,11 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the azygos vein and drains blood from the esophagus. + 2024-06-06T09:53:48Z FMA:4748 + esophageal vein @@ -890184,10 +890228,12 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the superior intercostal vein and drains the first intercostal space. + 2024-06-06T09:53:48Z FMA:4744 first posterior intercostal vein + supreme intercostal vein @@ -890262,9 +890308,11 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the internal iliac vein and drains the anterior surface of the sacrum. + 2024-06-06T09:53:48Z FMA:18905 + lateral sacral vein @@ -890293,10 +890341,12 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the internal iliac vein. + 2024-06-06T09:53:48Z FMA:18893 middle rectal vein + middle hemorrhoidal vein @@ -890338,9 +890388,11 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the internal iliac vein and drains the uterus. + 2024-06-06T09:53:48Z FMA:18896 + uterine vein @@ -890364,9 +890416,11 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of a vertebral vein and drains the suboccipital region, adjacent vertebral column, and deep muscles of the neck. + 2024-06-06T09:53:48Z FMA:4746 + deep cervical vein @@ -890390,9 +890444,11 @@ formulas. Modified from Cooper and Dawson 2009. An artery that is a branch of the segmental pulmonary artery and supplies deoxyge blood to a smaller subsegment of the lung. + 2024-06-06T09:53:48Z FMA:9311 + subsegmental pulmonary artery @@ -890427,8 +890483,10 @@ formulas. Modified from Cooper and Dawson 2009. A venule that receives drainage from the capillary beds after blood has perfused the pulmonary alveoli, and is tributary of the pulmonary venules. + 2024-06-06T09:53:48Z + intra-acinar venule @@ -890451,9 +890509,11 @@ formulas. Modified from Cooper and Dawson 2009. An artery that branches from the subclavian artery and supplies the thyroid gland, neck, and upper back regions. + 2024-06-06T09:53:48Z FMA:3990 + thyrocervical trunk @@ -890483,8 +890543,10 @@ formulas. Modified from Cooper and Dawson 2009. An artery that branches from the left anterior descending artery and supplies the interventricular septum of the heart. + 2024-06-06T09:53:48Z + septal perforating artery @@ -890514,8 +890576,10 @@ formulas. Modified from Cooper and Dawson 2009. An artery that branches from the right coronary artery or the circumflex artery and supplies the posterior and lateral walls of the left ventricle. + 2024-06-06T09:53:48Z + posterolateral artery @@ -890539,10 +890603,12 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the femoral vein and drains blood from the front and middle areas of the thigh. + 2024-06-06T09:53:48Z FMA:70921 set of lateral circumflex femoral veins + lateral femoral circumflex vein @@ -890585,9 +890651,11 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the anterior internal vertebral venous plexus and drains blood from the vertebral bodies. + 2024-06-06T09:53:48Z FMA:321542 + basivertebral vein @@ -890616,8 +890684,10 @@ formulas. Modified from Cooper and Dawson 2009. A venule that is tributary of the bronchial veins and drains blood from the bronchi and bronchioles of the lungs. + 2024-06-06T09:53:48Z + bronchial venule @@ -890653,8 +890723,10 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the facial vein and drains blood from the chin and lower lip. + 2024-06-06T09:53:48Z + mental vein @@ -890690,9 +890762,11 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the lingual vein and drains blood from the tongue. + 2024-06-06T09:53:48Z FMA:50830 + deep lingual vein @@ -890728,9 +890802,11 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the lingual vein and drains blood from the dorsum of the tongue, and the sides of the tongue. + 2024-06-06T09:53:48Z FMA:50826 + dorsal lingual vein @@ -890766,9 +890842,11 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the lingual vein and drains blood from the ventral (inferior) surface of the tongue and the sublingual glands. + 2024-06-06T09:53:48Z FMA:50836 + sublingual vein @@ -890798,9 +890876,11 @@ formulas. Modified from Cooper and Dawson 2009. A venous plexus tha connects the middle and superior thyroid veins. + 2024-06-06T09:53:48Z thiroid venous plexus + glandular venous plexus @@ -890841,8 +890921,10 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the axillary vein and drains blood from the region around the neck of the humerus. + 2024-06-06T09:53:48Z + circumflex humeral vein @@ -890871,10 +890953,12 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the axillary vein and drains blood from the thoracoacromial region, including the pectoral, shoulder, and clavicular regions. + 2024-06-06T09:53:48Z FMA:23058 thoraco-acromial vein + thoracoacromial vein @@ -890910,9 +890994,11 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the external jugular vein and drains blood from the superficial muscles of the back, mainly the trapezius muscle. + 2024-06-06T09:53:48Z FMA:50858 + transverse cervical vein @@ -890943,9 +891029,11 @@ formulas. Modified from Cooper and Dawson 2009. A venous plexus that is tributary of the deep cervical veins and drains blood from the suboccipital region. + 2024-06-06T09:53:48Z FMA:50803 + suboccipital venous plexus @@ -890982,10 +891070,12 @@ formulas. Modified from Cooper and Dawson 2009. An arteriole that branches from the pulmonary arteries and supplies deoxygenated blood to the pulmonary capillaries and alveolar capillaries of the lungs. + 2024-06-06T09:53:48Z FMA:279896 set of all pulmonary arterioles + pulmonary arteriole @@ -891015,9 +891105,11 @@ formulas. Modified from Cooper and Dawson 2009. An artery of the neck that branches from the external carotid artery and supplies the pharynx. + 2024-06-06T09:53:48Z FMA:49497 + ascending pharyngeal artery @@ -891047,8 +891139,10 @@ formulas. Modified from Cooper and Dawson 2009. An artery that branches from the internal carotid artery and supplies the anterior clinoid process of the dura mater. + 2024-06-06T09:53:48Z + dural artery @@ -891086,9 +891180,11 @@ formulas. Modified from Cooper and Dawson 2009. An artery that branches from the descending thoracic aorta and supplies the dorsal portion of the pericardium. + 2024-06-06T09:53:48Z FMA:69329 + pericardial artery @@ -891118,10 +891214,12 @@ formulas. Modified from Cooper and Dawson 2009. An artery that branches from the internal thoracic artery and supplies the pericardium and the diaphragm. + 2024-06-06T09:53:48Z FMA:3964 pericardiacophrenic artery + percardiacophrenic artery @@ -891151,10 +891249,12 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the great saphenous vein and drains blood from the inguinal region and the anterior abdominal wall. + 2024-06-06T09:53:48Z FMA:44319 superficial circumflex iliac vein + superficial iliac circumflex vein @@ -891224,8 +891324,10 @@ formulas. Modified from Cooper and Dawson 2009. A venule that is tributary of the prostatic venous plexus and drains blood from the prostate gland. + 2024-06-06T09:53:48Z + prostatic venule @@ -891268,8 +891370,10 @@ formulas. Modified from Cooper and Dawson 2009. A venule that branches from the hepatic portal vein to transport nutrient-rich blood from the gastrointestinal tract and spleen to supply the liver. The hepatic portal venule is tributary of the hepatic sinusoids. + 2024-06-06T09:53:48Z + hepatic portal venule @@ -891305,8 +891409,10 @@ formulas. Modified from Cooper and Dawson 2009. An artery that branches from the inferior alveolar artery and supplies the roots and pulp of the teeth of the lower jaw. It forms anastomoses with its contralateral partner. + 2024-06-06T09:53:48Z + incisor artery @@ -891342,9 +891448,11 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the angular vein and drains blood from the superficial tissues and skin of the dorsum (bridge) and ala (wings) of the nose. + 2024-06-06T09:53:48Z FMA:50910 + external nasal vein @@ -891380,9 +891488,11 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the angular vein and drains blood from the muscles and skin of the forehead. + 2024-06-06T09:53:48Z FMA:50898 + supratrochlear vein @@ -891413,8 +891523,10 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the angular veins and drains blood from the bridge of the nose. + 2024-06-06T09:53:48Z + transverse nasal root vein @@ -891451,8 +891563,10 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the cavernous sinus and drains blood from the pituitary gland. + 2024-06-06T09:53:48Z + hypophyseal vein @@ -891482,9 +891596,11 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the transverse sinus and drains blood from the adjacent cortical regions of the temporal lobe. The inferior anastomotic vein forms an anastomosis (connection) between the superficial middle cerebral vein anteriorly and the transverse sinus posteriorly. + 2024-06-06T09:53:48Z FMA:51239 + inferior anastomotic vein @@ -891522,9 +891638,11 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the brachial vein and drains blood from the lateral structures of the forearm, carpal and metacarpal bones, joints of the hand, and lateral forearm muscles. + 2024-06-06T09:53:48Z FMA:22947 + radial vein @@ -891562,9 +891680,11 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the brachial vein and drains blood from the hand and medial and posterior aspect of forearm. + 2024-06-06T09:53:48Z FMA:22950 + ulnar vein @@ -891601,8 +891721,10 @@ formulas. Modified from Cooper and Dawson 2009. An arteriole that branches from the pulmonary arteriole and supplies deoxygenated blood to the pulmonary capillaries in the alveoli of the lungs. + 2024-06-06T09:53:48Z + intra-acinar arteriole @@ -891646,9 +891768,11 @@ formulas. Modified from Cooper and Dawson 2009. An artery that branches from the facial artery, and branches to supply the soft palate and the palatine tonsil. + 2024-06-06T09:53:48Z FMA:49555 + ascending palatine artery @@ -891678,9 +891802,11 @@ formulas. Modified from Cooper and Dawson 2009. An artery that branches from the facial artery that runs forward under the mouth, then turns upward upon reaching the chin. + 2024-06-06T09:53:48Z FMA:49561 + submental artery @@ -891716,10 +891842,12 @@ formulas. Modified from Cooper and Dawson 2009. An artery that branches from the lingual artery and supplies blood to the tongue itself, particularly the body and tip of the tongue. The deep lingual artery travels superiorly in a tortuous course along the under (ventral) surface of the tongue, below the longitudinalis inferior, and above the mucous membrane. + 2024-06-06T09:53:48Z FMA:49532 third part of lingual artery + deep lingual artery @@ -891777,9 +891905,11 @@ formulas. Modified from Cooper and Dawson 2009. An artery that branches from the lingual artery and supplies the soft palate, tonsils, epiglottis, palatoglossal arch, and adjacent mucous membrane. The dorsal lingual artery runs along the upper border of the hyoid bone and anastomises with its fellow of the opposite side. + 2024-06-06T09:53:48Z FMA:49546 + dorsal lingual artery @@ -891809,9 +891939,11 @@ formulas. Modified from Cooper and Dawson 2009. An artery that branches from the maxillary artery and supplies the meninges. The accessory meningeal artery ascends through the foramen ovale to enter the cranial cavity and supply the dura mater of the floor of the middle cranial fossa and of the trigeminal cave, and to the trigeminal ganglion. + 2024-06-06T09:53:48Z FMA:79467 + accessory meningeal artery @@ -891859,9 +891991,11 @@ formulas. Modified from Cooper and Dawson 2009. An artery that branches from the maxillary artery and supplies blood to structures in the auditory tube, tympanic cavity, and upper pharynx. The artery of the pterygoid canal courses through the pterygoid canal, a small bony canal located in the sphenoid bone of the skull. + 2024-06-06T09:53:48Z FMA:85528 + artery of pterygoid canal @@ -891905,9 +892039,11 @@ formulas. Modified from Cooper and Dawson 2009. An artery that branches from the maxillary artery and supplies the hard and soft palate. + 2024-06-06T09:53:48Z FMA:49791 + descending palatine artery @@ -891925,10 +892061,12 @@ formulas. Modified from Cooper and Dawson 2009. An artery that branches from the left coronary artery and supplies the anterior wall of the left ventricle, the interventricular septum, and the apex of the heart. + 2024-06-06T09:53:48Z FMA:3862 anterior interventricular branch of left coronary artery + left anterior descending artery @@ -891965,9 +892103,11 @@ formulas. Modified from Cooper and Dawson 2009. A venous plexus that is tributary of the basivertebral veins and internal vertebral veins, draining blood from the vertebrae and spinal cord. The anterior internal vertebral venous plexus is located within the vertebral canal. + 2024-06-06T09:53:48Z FMA:4869 + anterior internal vertebral venous plexus @@ -892010,9 +892150,11 @@ formulas. Modified from Cooper and Dawson 2009. A vein that drains blood from the vertebral column and intervertebral discs. In the neck, it is tributary of into the vertebral veins. In the thorax, it is tributary of the posterior intercostal veins. In the lumbar and sacral regions, it is tributary of the lumbar and lateral sacral veins + 2024-06-06T09:53:48Z FMA:76736 + intervertebral vein @@ -892050,10 +892192,12 @@ formulas. Modified from Cooper and Dawson 2009. A vein that is tributary of the inferior vena cava and drains blood from the posterior abdominal wall and lumbar region. + 2024-06-06T09:53:48Z FMA:70889 set of lumbar veins + lumbar vein @@ -892709,6 +892853,126 @@ formulas. Modified from Cooper and Dawson 2009. + + + + + + + + + + + A posterior free border of a mesosalpinx. + + + 2024-11-14T09:59:53Z + anti-mesosalpinx + posterior free border of mesosalpinx + posterior free edge of mesosalpinx + uberon + UBERON:8600117 + antimesosalpinx + + + + + A posterior free border of a mesosalpinx. + https://vanat.ahc.umn.edu/ungDissect/Lab17/Lab17.html + + + + + anti-mesosalpinx + doi:10.1101/2020.08.23.263772 + + + + + posterior free border of mesosalpinx + https://vanat.ahc.umn.edu/ungDissect/Lab17/Lab17.html + + + + + posterior free edge of mesosalpinx + https://orcid.org/0000-0001-7655-4833 + + + + + + + + + A transient organ in the developing embryo composed of the dorsal aorta, developing gonads, and embryonic kidney. This structure is located in the embryonic mesoderm and serves as the primary site for the generation of definitive hematopoietic stem cells. + + 2024-10-25T08:42:34Z + uberon + UBERON:8700000 + aorta-gonad-mesonephros + + + + + A transient organ in the developing embryo composed of the dorsal aorta, developing gonads, and embryonic kidney. This structure is located in the embryonic mesoderm and serves as the primary site for the generation of definitive hematopoietic stem cells. + PMID:25686881 + PMID:25749005 + PMID:31813624 + + + + + + + + + A specialized epithelial layer overlying the luminal surface of lymphoid follicles in gut-associated lymphoid tissue. It is found in Peyer's patches of the small intestine and appendix in humans and in the intestine and caecal patches in mice. This layer contains specialised M cells and has fewer goblet cells compared to surrounding tissue. This layer plays a crucial role in mucosal immune surveillance. + + 2024-11-07T11:44:27Z + FAE + uberon + UBERON:8700001 + follicle associated epithelium + + + + + A specialized epithelial layer overlying the luminal surface of lymphoid follicles in gut-associated lymphoid tissue. It is found in Peyer's patches of the small intestine and appendix in humans and in the intestine and caecal patches in mice. This layer contains specialised M cells and has fewer goblet cells compared to surrounding tissue. This layer plays a crucial role in mucosal immune surveillance. + DOI:10.1007/s00702-022-02561-x + DOI:10.4061/2010/823710 + + + + + FAE + DOI:10.1007/s00702-022-02561-x + + + + + + + + + + The second deepest layer of the stratified squamous epithelium lining the esophagus, positioned directly above the stratum basale. It consists of multiple layers of keratinocytes connected by strong intercellular junctions called desmosomes, giving the cells a characteristic "spiny" appearance. This layer provides structural support, contributes to the epithelial barrier function, and serves as a transitional zone for keratinocytes migrating towards the luminal surface, playing a crucial role in maintaining the integrity and protective properties of the esophageal lining. + + 2024-11-14T15:00:21Z + uberon + UBERON:8700002 + stratum spinosum of esophageal epithelium + + + + + The second deepest layer of the stratified squamous epithelium lining the esophagus, positioned directly above the stratum basale. It consists of multiple layers of keratinocytes connected by strong intercellular junctions called desmosomes, giving the cells a characteristic "spiny" appearance. This layer provides structural support, contributes to the epithelial barrier function, and serves as a transitional zone for keratinocytes migrating towards the luminal surface, playing a crucial role in maintaining the integrity and protective properties of the esophageal lining. + PMID:21126700 + PMID:26019440 + + + + @@ -892859,14 +893123,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + hagfish have median nostril - + @@ -892880,14 +893144,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:25312359 - + @@ -892901,14 +893165,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + midface division only makes sense for gnathostomes - + @@ -892922,14 +893186,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16417468 - + @@ -892943,14 +893207,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16417468 - + @@ -893054,14 +893318,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ZFS - + @@ -893090,14 +893354,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -893111,14 +893375,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -893177,15 +893441,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + female dbpedia-modified - + @@ -893199,15 +893463,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + male dbpedia-modified - + @@ -893221,14 +893485,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:15843440 - + @@ -893257,14 +893521,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + vertebrates - + @@ -893458,14 +893722,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -893479,14 +893743,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -893500,14 +893764,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -893521,14 +893785,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -893542,14 +893806,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -893563,14 +893827,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -893584,14 +893848,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA-abduced-lr - + @@ -893605,14 +893869,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + definitional - + @@ -893626,14 +893890,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + myelin not present in all taxa that have a commissure - + @@ -893647,14 +893911,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + https://github.com/obophenotype/uberon/wiki/The-neural-crest - + @@ -893713,14 +893977,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + only in species that have a stomach - + @@ -893764,14 +894028,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia:Vitelline_vein - + @@ -893875,14 +894139,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -893936,14 +894200,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -893957,14 +894221,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16313389 - + @@ -893978,15 +894242,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Mammals ISBN:0073040584-table13.1 - + @@ -894000,15 +894264,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Mammals ISBN:0073040584-table13.1 - + @@ -894022,15 +894286,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Urodele ISBN:0073040584-table13.1 - + @@ -894044,15 +894308,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Urodele ISBN:0073040584-table13.1 - + @@ -894066,16 +894330,16 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Anurans ISBN:0073040584-table13.1 XAO - + @@ -894089,15 +894353,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Anurans ISBN:0073040584-table13.1 - + @@ -894111,15 +894375,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Aves ISBN:0073040584-table13.1 - + @@ -894133,15 +894397,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Aves ISBN:0073040584-table13.1 - + @@ -894155,15 +894419,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + pouches 3 and 4 in chick PMID:16313389 - + @@ -894177,15 +894441,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + pouches 3 and 4 in human PMID:16313389 - + @@ -894199,14 +894463,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia:Vitelline_vein - + @@ -894220,15 +894484,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + requires review EHDAA2 - + @@ -894242,15 +894506,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + requires review EHDAA2 - + @@ -894264,15 +894528,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + may be present in other parts in other species FMA - + @@ -894346,15 +894610,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Lateral margin of coccyx and related border of sacrum dbpedia - + @@ -894368,15 +894632,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Lateral margin of coccyx and related border of sacrum dbpedia - + @@ -894390,14 +894654,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + WP - + @@ -894426,14 +894690,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -894447,15 +894711,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + proximally Wikipedia - + @@ -894469,15 +894733,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + proximally Wikipedia - + @@ -894491,15 +894755,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + radially Wikipedia - + @@ -894513,15 +894777,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ulnar side Wikipedia - + @@ -894535,15 +894799,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + distally Wikipedia - + @@ -894557,15 +894821,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + distally Wikipedia - + @@ -894579,15 +894843,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + distally Wikipedia - + @@ -894723,14 +894987,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -894744,15 +895008,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + right arch 4 in human embryology.ch - + @@ -894766,14 +895030,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -894787,14 +895051,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia:Vitelline_vein - + @@ -894808,14 +895072,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -894829,14 +895093,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:22179203 - + @@ -894865,14 +895129,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:080184780X - + @@ -894886,14 +895150,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -894907,14 +895171,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -894928,14 +895192,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -894949,14 +895213,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -894970,14 +895234,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -894991,14 +895255,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -895012,14 +895276,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -895033,14 +895297,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -895054,14 +895318,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -895090,14 +895354,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + WP - + @@ -895111,14 +895375,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:0073040584 - + @@ -895132,14 +895396,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:0073040584 - + @@ -895153,14 +895417,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + http://www.avdc.org/Nomenclature.pdf - + @@ -895174,14 +895438,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA-implied - + @@ -895222,14 +895486,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -895243,14 +895507,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -895264,14 +895528,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + MP - + @@ -895285,14 +895549,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + MP - + @@ -895323,14 +895587,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMC4038951 - + @@ -895344,14 +895608,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:080184780X - + @@ -895365,14 +895629,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -895386,14 +895650,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -895437,15 +895701,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + teleost NCBIBook:NBK53175 - + @@ -895459,14 +895723,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Euarchontoglires - + @@ -895495,14 +895759,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + evaginated - + @@ -895516,14 +895780,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + evaginated - + @@ -895567,14 +895831,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + https://github.com/obophenotype/uberon/wiki/The-neural-crest - + @@ -895588,14 +895852,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16417468 - + @@ -895609,14 +895873,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -895630,14 +895894,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -895651,14 +895915,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -895689,16 +895953,16 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Amphibia AAO Wikipedia - + @@ -895712,14 +895976,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -895733,15 +895997,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + UBERON:0011870 or UBERON:0011869 Wikipedia - + @@ -895755,15 +896019,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + hamate Wikipedia - + @@ -895777,14 +896041,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + cjm - + @@ -895815,14 +896079,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + NIFSTD - + @@ -895851,14 +896115,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + MP - + @@ -895872,14 +896136,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + MP - + @@ -895893,14 +896157,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + XAO - + @@ -895914,15 +896178,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:0073040584 Wikipedia - + @@ -895966,14 +896230,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + EHDAA2 - + @@ -896019,14 +896283,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16496288 - + @@ -896040,14 +896304,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -896061,14 +896325,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + MP - + @@ -896082,14 +896346,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + JB - + @@ -896103,14 +896367,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16417468 - + @@ -896124,14 +896388,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16417468 - + @@ -896145,14 +896409,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -896166,15 +896430,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + AAO https://github.com/geneontology/go-ontology/issues/16143 - + @@ -896203,14 +896467,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896224,14 +896488,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896245,14 +896509,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896266,14 +896530,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896287,14 +896551,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896308,14 +896572,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896329,14 +896593,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896350,14 +896614,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896371,14 +896635,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896392,14 +896656,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896413,14 +896677,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896434,14 +896698,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896455,14 +896719,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896476,14 +896740,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896497,14 +896761,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896518,14 +896782,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896539,14 +896803,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896560,14 +896824,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896581,14 +896845,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896602,14 +896866,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896623,14 +896887,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896644,14 +896908,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896665,14 +896929,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896686,14 +896950,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896707,14 +896971,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896728,14 +896992,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -896749,14 +897013,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:9780878932504 - + @@ -896838,14 +897102,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -896859,14 +897123,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -896910,14 +897174,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:0073040584 - + @@ -896931,14 +897195,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16417468 - + @@ -896952,14 +897216,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipathways:WP2062 - + @@ -896988,14 +897252,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -897009,14 +897273,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -897060,14 +897324,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + teleosts - + @@ -897081,32 +897345,17 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Mammals - + - - - - - - - - - - - - - - - @@ -897132,14 +897381,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + EHDAA2 - + @@ -897153,16 +897402,16 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Mammals EHDAA2 ISBN:0073040584-table13.1 - + @@ -897176,15 +897425,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Mammals ISBN:0073040584-table13.1 - + @@ -897198,15 +897447,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Elasmobranchii ISBN:0073040584-table13.1 - + @@ -897220,15 +897469,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Elasmobranchii ISBN:0073040584-table13.1 - + @@ -897242,15 +897491,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Elasmobranchii ISBN:0073040584-table13.1 - + @@ -897264,15 +897513,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Elasmobranchii ISBN:0073040584-table13.1 - + @@ -897286,15 +897535,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Urodele ISBN:0073040584-table13.1 - + @@ -897308,15 +897557,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Urodele ISBN:0073040584-table13.1 - + @@ -897330,15 +897579,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Urodele ISBN:0073040584-table13.1 - + @@ -897352,15 +897601,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Anuran ISBN:0073040584-table13.1 - + @@ -897374,15 +897623,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Turtles ISBN:0073040584-table13.1 - + @@ -897396,15 +897645,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Turtles ISBN:0073040584-table13.1 - + @@ -897418,15 +897667,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Lizard ISBN:0073040584-table13.1 - + @@ -897440,15 +897689,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Lizard ISBN:0073040584-table13.1 - + @@ -897462,15 +897711,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Snakes ISBN:0073040584-table13.1 - + @@ -897484,15 +897733,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Snakes ISBN:0073040584-table13.1 - + @@ -897506,15 +897755,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Aves ISBN:0073040584-table13.1 - + @@ -897528,15 +897777,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Aves ISBN:0073040584-table13.1 - + @@ -897550,14 +897799,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + conservatively place at deuterostome, excluding acoelomates - + @@ -897616,14 +897865,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + MP - + @@ -897637,14 +897886,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + XAO-abduced - + @@ -897658,14 +897907,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -897739,14 +897988,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:3631381 - + @@ -897790,14 +898039,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + AAO - + @@ -897856,14 +898105,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:11997885 - + @@ -897877,15 +898126,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + skin of the upper lip dbpedia - + @@ -897899,14 +898148,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + dbpedia - + @@ -897935,14 +898184,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + DOI:10.1038/ncomms1502 - + @@ -897956,14 +898205,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + DOI:10.1038/ncomms1502 - + @@ -897977,15 +898226,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + EHDAA2 ISBN:9780878932504 - + @@ -897999,15 +898248,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Gallus gallus PMID:17051547 - + @@ -898100,14 +898349,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + DOI:10.1007/BF02547558 - + @@ -898121,15 +898370,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia:Digastric_muscle Wikipedia:Mastoid_process - + @@ -898160,14 +898409,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + cloacal bursa - + @@ -898181,14 +898430,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:11479904 - + @@ -898262,14 +898511,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -898283,14 +898532,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -898304,14 +898553,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:22135653 - + @@ -898325,14 +898574,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:22135653 - + @@ -898346,14 +898595,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:22135653 - + @@ -898442,15 +898691,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + 15% WP - + @@ -898464,15 +898713,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + 85-100% WP - + @@ -898486,16 +898735,16 @@ formulas. Modified from Cooper and Dawson 2009. - + - + in the opossum the panniculus carnosis attaches to the humerus DOI:10.2307/1373999 FEED:rd - + @@ -898539,14 +898788,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:7559104 - + @@ -898605,17 +898854,35 @@ formulas. Modified from Cooper and Dawson 2009. - + - + EHDAA2 - + + + + + + + + + + + + + + + + + + + diff --git a/uberon.obo b/uberon.obo index 064947bd18..287389a1c9 100755 --- a/uberon.obo +++ b/uberon.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2024-09-03 +data-version: releases/2024-11-25 subsetdef: 1_STAR "" subsetdef: 2_STAR "" subsetdef: 3_STAR "" @@ -26,6 +26,7 @@ subsetdef: feed_aligned "subset of classes that have logical defs text defs and subsetdef: functional_classification "functional_classification" subsetdef: general_cell_types_upper_slim "" subsetdef: gocheck_do_not_annotate "" +subsetdef: gocheck_obsoletion_candidate "" subsetdef: goslim_agr "" subsetdef: goslim_candida "" subsetdef: goslim_chembl "" @@ -51,11 +52,13 @@ subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_ontology "" subsetdef: http://purl.obolibrary.org/obo/valid_for_gocam "" subsetdef: human_reference_atlas "" +subsetdef: human_subset "" subsetdef: inconsistent_with_fma "classes that have some inconsistency with FMA" subsetdef: kidney_upper_slim "" subsetdef: location_grouping "" subsetdef: major_organ "somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads" subsetdef: metazoa_core "core classes typically found across metazoa. one purpose is to create a rough set of terms that could be used to start a new metazoan AO. Note this subset is not yet fully fleshed out" +subsetdef: mouse_subset "" subsetdef: mpath_slim "" subsetdef: non_informative "abstract class brought in to group ontology classes but not informative" subsetdef: organ_slim "organs, excluding individual muscles and skeletal elements" @@ -793,7 +796,7 @@ synonym: "apoproteins" RELATED [ChEBI] xref: KEGG:C16240 is_a: BFO:0000004 ! independent continuant is_a: CHEBI:38560 ! simple protein -relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite [Term] id: CHEBI:138675 @@ -838,7 +841,7 @@ relationship: is_conjugate_base_of CHEBI:28616 ! carbamic acid id: CHEBI:139588 name: alpha-hydroxy ketone namespace: chebi_ontology -def: "An alpha-oxyketone that has a hydroxy group as the alpha-oxy moiety." [] +def: "A ketone containing a hydroxy group on the alpha-carbon relative to the C=O group." [] subset: 3_STAR synonym: "alpha-hydroxy ketones" RELATED [ChEBI] synonym: "alpha-hydroxy-ketone" RELATED [ChEBI] @@ -849,8 +852,8 @@ xref: PMID:15326516 {source="Europe PMC"} xref: PMID:19908854 {source="Europe PMC"} xref: PMID:20382022 {source="Europe PMC"} xref: PMID:23295224 {source="Europe PMC"} -is_a: CHEBI:30879 ! alcohol -is_a: CHEBI:52396 ! alpha-oxyketone +is_a: CHEBI:17087 ! ketone +is_a: CHEBI:33822 ! organic hydroxy compound [Term] id: CHEBI:139590 @@ -906,7 +909,7 @@ def: "An antigenic epitope recognized by an anti-bilirubin monoclonal antibody d subset: 3_STAR is_a: BFO:0000004 ! independent continuant is_a: CHEBI:24433 ! group -relationship: has_role CHEBI:53000 ! epitope +relationship: RO:0000087 CHEBI:53000 ! has role epitope [Term] id: CHEBI:142355 @@ -933,9 +936,9 @@ synonym: "hydrogen glutamate" EXACT IUPAC_NAME [IUPAC] xref: Gmelin:327908 {source="Gmelin"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:33558 ! alpha-amino-acid anion -relationship: has_role CHEBI:78675 ! fundamental metabolite relationship: is_conjugate_acid_of CHEBI:29987 ! glutamate(2-) relationship: is_conjugate_base_of CHEBI:18237 ! glutamic acid +relationship: RO:0000087 CHEBI:78675 ! has role fundamental metabolite [Term] id: CHEBI:15339 @@ -973,7 +976,6 @@ synonym: "CHOLINE ION" RELATED [PDBeChem] synonym: "N,N,N-trimethylethanol-ammonium" RELATED [ChEBI] synonym: "N-trimethylethanolamine" RELATED [ChEBI] synonym: "trimethylethanolamine" RELATED [ChEBI] -xref: Beilstein:1736748 {source="Beilstein"} xref: CAS:62-49-7 {source="ChemIDplus"} xref: CAS:62-49-7 {source="KEGG COMPOUND"} xref: Drug_Central:3097 {source="DrugCentral"} @@ -1015,15 +1017,15 @@ xref: Wikipedia:Choline xref: YMDB:YMDB00227 is_a: BFO:0000004 ! independent continuant is_a: CHEBI:23217 ! cholines -relationship: has_role CHEBI:25512 ! neurotransmitter -relationship: has_role CHEBI:33284 ! nutrient -relationship: has_role CHEBI:50904 ! allergen -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:76924 ! plant metabolite -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite -relationship: has_role CHEBI:77746 ! human metabolite -relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: RO:0000087 CHEBI:25512 ! has role neurotransmitter +relationship: RO:0000087 CHEBI:33284 ! has role nutrient +relationship: RO:0000087 CHEBI:50904 ! has role allergen +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:76924 ! has role plant metabolite +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite +relationship: RO:0000087 CHEBI:83056 ! has role Daphnia magna metabolite [Term] id: CHEBI:15355 @@ -1069,12 +1071,12 @@ xref: Wikipedia:Acetylcholine is_a: BFO:0000004 ! independent continuant is_a: CHEBI:35287 ! acylcholine is_a: CHEBI:47622 ! acetate ester -relationship: has_role CHEBI:24621 ! hormone -relationship: has_role CHEBI:25512 ! neurotransmitter -relationship: has_role CHEBI:35620 ! vasodilator agent -relationship: has_role CHEBI:38325 ! muscarinic agonist -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:77746 ! human metabolite +relationship: RO:0000087 CHEBI:24621 ! has role hormone +relationship: RO:0000087 CHEBI:25512 ! has role neurotransmitter +relationship: RO:0000087 CHEBI:35620 ! has role vasodilator agent +relationship: RO:0000087 CHEBI:38325 ! has role muscarinic agonist +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:15366 @@ -1104,7 +1106,6 @@ synonym: "INS No. 260" RELATED [ChEBI] synonym: "MeCO2H" RELATED [ChEBI] synonym: "MeCOOH" RELATED [ChEBI] synonym: "Methanecarboxylic acid" RELATED [ChemIDplus] -xref: Beilstein:506007 {source="Beilstein"} xref: CAS:64-19-7 {source="ChemIDplus"} xref: CAS:64-19-7 {source="NIST Chemistry WebBook"} xref: CAS:64-19-7 {source="KEGG COMPOUND"} @@ -1131,11 +1132,11 @@ xref: PPDB:1333 xref: Reaxys:506007 {source="Reaxys"} xref: Wikipedia:Acetic_acid is_a: CHEBI:25384 ! monocarboxylic acid -relationship: has_role CHEBI:48356 ! protic solvent -relationship: has_role CHEBI:64049 ! food acidity regulator -relationship: has_role CHEBI:65256 ! antimicrobial food preservative -relationship: has_role CHEBI:83056 ! Daphnia magna metabolite relationship: is_conjugate_acid_of CHEBI:30089 ! acetate +relationship: RO:0000087 CHEBI:48356 ! has role protic solvent +relationship: RO:0000087 CHEBI:64049 ! has role food acidity regulator +relationship: RO:0000087 CHEBI:65256 ! has role antimicrobial food preservative +relationship: RO:0000087 CHEBI:83056 ! has role Daphnia magna metabolite [Term] id: CHEBI:15377 @@ -1170,7 +1171,6 @@ synonym: "Wasser" RELATED [ChEBI] synonym: "WATER" EXACT [PDBeChem] synonym: "Water" EXACT [KEGG_COMPOUND] synonym: "water" EXACT IUPAC_NAME [IUPAC] -xref: Beilstein:3587155 {source="Beilstein"} xref: CAS:7732-18-5 {source="NIST Chemistry WebBook"} xref: CAS:7732-18-5 {source="ChemIDplus"} xref: CAS:7732-18-5 {source="KEGG COMPOUND"} @@ -1187,14 +1187,14 @@ is_a: BFO:0000004 ! independent continuant is_a: CHEBI:33693 ! oxygen hydride is_a: CHEBI:37176 ! mononuclear parent hydride is_a: CHEBI:52625 ! inorganic hydroxy compound -relationship: has_role CHEBI:48360 ! amphiprotic solvent -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:76413 ! greenhouse gas -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_acid_of CHEBI:16234 ! hydroxide relationship: is_conjugate_base_of CHEBI:29412 ! oxonium +relationship: RO:0000087 CHEBI:48360 ! has role amphiprotic solvent +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:76413 ! has role greenhouse gas +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:15378 @@ -1263,15 +1263,15 @@ is_a: BFO:0000004 ! independent continuant is_a: CHEBI:138675 ! gas molecular entity is_a: CHEBI:25362 ! elemental molecule is_a: CHEBI:33263 ! diatomic oxygen -relationship: has_role CHEBI:27027 ! micronutrient -relationship: has_role CHEBI:33284 ! nutrient -relationship: has_role CHEBI:33893 ! reagent -relationship: has_role CHEBI:35472 ! anti-inflammatory drug -relationship: has_role CHEBI:63248 ! oxidising agent -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:77746 ! human metabolite -relationship: has_role CHEBI:77974 ! food packaging gas relationship: is_conjugate_base_of CHEBI:29793 ! hydridodioxygen(1+) +relationship: RO:0000087 CHEBI:27027 ! has role micronutrient +relationship: RO:0000087 CHEBI:33284 ! has role nutrient +relationship: RO:0000087 CHEBI:33893 ! has role reagent +relationship: RO:0000087 CHEBI:35472 ! has role anti-inflammatory drug +relationship: RO:0000087 CHEBI:63248 ! has role oxidising agent +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite +relationship: RO:0000087 CHEBI:77974 ! has role food packaging gas [Term] id: CHEBI:15422 @@ -1291,7 +1291,6 @@ synonym: "Adenosine triphosphate" RELATED [ChemIDplus] synonym: "ADENOSINE-5'-TRIPHOSPHATE" RELATED [PDBeChem] synonym: "ATP" EXACT [KEGG_COMPOUND] synonym: "H4atp" RELATED [IUPAC] -xref: Beilstein:73010 {source="Beilstein"} xref: CAS:56-65-5 {source="ChemIDplus"} xref: CAS:56-65-5 {source="KEGG COMPOUND"} xref: Drug_Central:91 {source="DrugCentral"} @@ -1307,11 +1306,11 @@ xref: Reaxys:73010 {source="Reaxys"} xref: Wikipedia:Adenosine_triphosphate is_a: CHEBI:37045 ! purine ribonucleoside 5'-triphosphate is_a: CHEBI:37096 ! adenosine 5'-phosphate -relationship: has_role CHEBI:23357 ! cofactor -relationship: has_role CHEBI:27027 ! micronutrient -relationship: has_role CHEBI:50733 ! nutraceutical -relationship: has_role CHEBI:78675 ! fundamental metabolite relationship: is_conjugate_acid_of CHEBI:57299 ! ATP(3-) +relationship: RO:0000087 CHEBI:23357 ! has role cofactor +relationship: RO:0000087 CHEBI:27027 ! has role micronutrient +relationship: RO:0000087 CHEBI:50733 ! has role nutraceutical +relationship: RO:0000087 CHEBI:78675 ! has role fundamental metabolite [Term] id: CHEBI:15440 @@ -1349,10 +1348,10 @@ xref: PMID:25987292 {source="Europe PMC"} xref: Wikipedia:Squalene is_a: BFO:0000004 ! independent continuant is_a: CHEBI:35191 ! triterpene -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:76924 ! plant metabolite -relationship: has_role CHEBI:77746 ! human metabolite +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:76924 ! has role plant metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:15693 @@ -1426,7 +1425,6 @@ synonym: "formylate" RELATED [ChEBI] synonym: "HCO2 anion" RELATED [NIST_Chemistry_WebBook] synonym: "hydrogen carboxylate" RELATED [ChEBI] synonym: "methanoate" RELATED [ChEBI] -xref: Beilstein:1901205 {source="Beilstein"} xref: CAS:71-47-6 {source="ChemIDplus"} xref: CAS:71-47-6 {source="NIST Chemistry WebBook"} xref: Gmelin:1006 {source="Gmelin"} @@ -1440,9 +1438,9 @@ xref: UM-BBD_compID:c0106 {source="UM-BBD"} xref: Wikipedia:Formate is_a: BFO:0000004 ! independent continuant is_a: CHEBI:35757 ! monocarboxylic acid anion -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_base_of CHEBI:30751 ! formic acid +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:15841 @@ -1477,7 +1475,6 @@ synonym: "D-Glutaminic acid" RELATED [KEGG_COMPOUND] synonym: "D-Glutaminsaeure" RELATED [ChEBI] synonym: "DGL" RELATED [PDBeChem] synonym: "glutamic acid D-form" RELATED [ChemIDplus] -xref: Beilstein:1723800 {source="Beilstein"} xref: CAS:6893-26-1 {source="NIST Chemistry WebBook"} xref: CAS:6893-26-1 {source="ChemIDplus"} xref: CAS:6893-26-1 {source="KEGG COMPOUND"} @@ -1491,10 +1488,10 @@ xref: PDBeChem:DGL xref: Reaxys:1723800 {source="Reaxys"} is_a: CHEBI:16733 ! D-alpha-amino acid is_a: CHEBI:18237 ! glutamic acid -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite relationship: is_conjugate_acid_of CHEBI:29986 ! D-glutamate(1-) relationship: is_enantiomer_of CHEBI:16015 ! L-glutamic acid +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite [Term] id: CHEBI:15986 @@ -1537,7 +1534,6 @@ synonym: "L-Glutamic acid" EXACT [KEGG_COMPOUND] synonym: "L-glutamic acid" EXACT IUPAC_NAME [IUPAC] synonym: "L-Glutaminic acid" RELATED [KEGG_COMPOUND] synonym: "L-Glutaminsaeure" RELATED [ChEBI] -xref: Beilstein:1723801 {source="Beilstein"} xref: BPDB:2297 xref: CAS:56-86-0 {source="NIST Chemistry WebBook"} xref: CAS:56-86-0 {source="ChemIDplus"} @@ -1563,14 +1559,14 @@ xref: Reaxys:1723801 {source="Reaxys"} xref: Wikipedia:L-Glutamic_Acid is_a: CHEBI:18237 ! glutamic acid is_a: CHEBI:24318 ! glutamine family amino acid -relationship: has_role CHEBI:173085 ! ferroptosis inducer -relationship: has_role CHEBI:25512 ! neurotransmitter -relationship: has_role CHEBI:27027 ! micronutrient -relationship: has_role CHEBI:50733 ! nutraceutical -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite relationship: is_conjugate_acid_of CHEBI:29985 ! L-glutamate(1-) relationship: is_enantiomer_of CHEBI:15966 ! D-glutamic acid +relationship: RO:0000087 CHEBI:173085 ! has role ferroptosis inducer +relationship: RO:0000087 CHEBI:25512 ! has role neurotransmitter +relationship: RO:0000087 CHEBI:27027 ! has role micronutrient +relationship: RO:0000087 CHEBI:50733 ! has role nutraceutical +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite [Term] id: CHEBI:16134 @@ -1600,7 +1596,6 @@ synonym: "NH3" RELATED [UniProt] synonym: "NH3" RELATED [IUPAC] synonym: "R-717" RELATED [ChEBI] synonym: "spirit of hartshorn" RELATED [ChemIDplus] -xref: Beilstein:3587154 {source="Beilstein"} xref: CAS:7664-41-7 {source="ChemIDplus"} xref: CAS:7664-41-7 {source="NIST Chemistry WebBook"} xref: CAS:7664-41-7 {source="KEGG COMPOUND"} @@ -1654,15 +1649,15 @@ is_a: BFO:0000004 ! independent continuant is_a: CHEBI:138675 ! gas molecular entity is_a: CHEBI:35107 ! azane is_a: CHEBI:37176 ! mononuclear parent hydride -relationship: has_role CHEBI:228364 ! NMR chemical shift reference compound -relationship: has_role CHEBI:25212 ! metabolite -relationship: has_role CHEBI:50910 ! neurotoxin -relationship: has_role CHEBI:59740 ! nucleophilic reagent -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:77941 ! EC 3.5.1.4 (amidase) inhibitor -relationship: has_role CHEBI:78433 ! refrigerant relationship: is_conjugate_acid_of CHEBI:29337 ! azanide relationship: is_conjugate_base_of CHEBI:28938 ! ammonium +relationship: RO:0000087 CHEBI:228364 ! has role NMR chemical shift reference compound +relationship: RO:0000087 CHEBI:25212 ! has role metabolite +relationship: RO:0000087 CHEBI:50910 ! has role neurotoxin +relationship: RO:0000087 CHEBI:59740 ! has role nucleophilic reagent +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:77941 ! has role EC 3.5.1.4 (amidase) inhibitor +relationship: RO:0000087 CHEBI:78433 ! has role refrigerant [Term] id: CHEBI:16137 @@ -1680,8 +1675,8 @@ xref: KEGG:C00401 xref: KEGG:G11334 is_a: BFO:0000004 ! independent continuant is_a: CHEBI:37395 ! mucopolysaccharide -relationship: has_role CHEBI:75771 ! mouse metabolite relationship: is_conjugate_acid_of CHEBI:57652 ! chondroitin D-glucuronate anion +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite [Term] id: CHEBI:16189 @@ -1707,7 +1702,6 @@ synonym: "sulphate ion" RELATED [ChEBI] synonym: "tetraoxidosulfate(2-)" EXACT IUPAC_NAME [IUPAC] synonym: "tetraoxosulfate(2-)" EXACT IUPAC_NAME [IUPAC] synonym: "tetraoxosulfate(VI)" EXACT IUPAC_NAME [IUPAC] -xref: Beilstein:3648446 {source="Beilstein"} xref: CAS:14808-79-8 {source="ChemIDplus"} xref: CAS:14808-79-8 {source="NIST Chemistry WebBook"} xref: Gmelin:2120 {source="Gmelin"} @@ -1753,10 +1747,10 @@ is_a: BFO:0000004 ! independent continuant is_a: CHEBI:33482 ! sulfur oxoanion is_a: CHEBI:48154 ! sulfur oxide is_a: CHEBI:79388 ! divalent inorganic anion -relationship: has_role CHEBI:23357 ! cofactor -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_base_of CHEBI:45696 ! hydrogensulfate +relationship: RO:0000087 CHEBI:23357 ! has role cofactor +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:16234 @@ -1782,8 +1776,8 @@ xref: KEGG:C01328 xref: PDBeChem:OH is_a: BFO:0000004 ! independent continuant is_a: CHEBI:33693 ! oxygen hydride -relationship: has_role CHEBI:75771 ! mouse metabolite relationship: is_conjugate_base_of CHEBI:15377 ! water +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite [Term] id: CHEBI:16247 @@ -1835,7 +1829,6 @@ synonym: "Ado" RELATED [CBN] synonym: "beta-D-Adenosine" RELATED [ChemIDplus] synonym: "Deoxyadenosine" RELATED [DrugBank] synonym: "Desoxyadenosine" RELATED [DrugBank] -xref: Beilstein:93029 {source="Beilstein"} xref: CAS:58-61-7 {source="ChemIDplus"} xref: CAS:58-61-7 {source="NIST Chemistry WebBook"} xref: CAS:58-61-7 {source="KEGG COMPOUND"} @@ -1865,11 +1858,11 @@ is_a: BFO:0000004 ! independent continuant is_a: CHEBI:142355 ! purines D-ribonucleoside is_a: CHEBI:22260 ! adenosines relationship: has_functional_parent CHEBI:16708 ! adenine -relationship: has_role CHEBI:35480 ! analgesic -relationship: has_role CHEBI:35620 ! vasodilator agent -relationship: has_role CHEBI:38070 ! anti-arrhythmia drug -relationship: has_role CHEBI:77746 ! human metabolite -relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: RO:0000087 CHEBI:35480 ! has role analgesic +relationship: RO:0000087 CHEBI:35620 ! has role vasodilator agent +relationship: RO:0000087 CHEBI:38070 ! has role anti-arrhythmia drug +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite +relationship: RO:0000087 CHEBI:78675 ! has role fundamental metabolite [Term] id: CHEBI:16336 @@ -1903,8 +1896,8 @@ xref: Wikipedia:Hyaluronan is_a: BFO:0000004 ! independent continuant is_a: CHEBI:37395 ! mucopolysaccharide is_a: CHEBI:72813 ! exopolysaccharide -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_acid_of CHEBI:132153 ! hyaluronate +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:16526 @@ -1932,7 +1925,6 @@ synonym: "E-290" RELATED [ChEBI] synonym: "E290" RELATED [ChEBI] synonym: "methanedione" EXACT IUPAC_NAME [IUPAC] synonym: "R-744" RELATED [ChEBI] -xref: Beilstein:1900390 {source="Beilstein"} xref: CAS:124-38-9 {source="ChemIDplus"} xref: CAS:124-38-9 {source="NIST Chemistry WebBook"} xref: CAS:124-38-9 {source="KEGG COMPOUND"} @@ -1976,18 +1968,18 @@ is_a: BFO:0000004 ! independent continuant is_a: CHEBI:138675 ! gas molecular entity is_a: CHEBI:23014 ! carbon oxide is_a: CHEBI:64708 ! one-carbon compound -relationship: has_role CHEBI:35620 ! vasodilator agent -relationship: has_role CHEBI:38867 ! anaesthetic -relationship: has_role CHEBI:46787 ! solvent -relationship: has_role CHEBI:48706 ! antagonist -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:76413 ! greenhouse gas -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite -relationship: has_role CHEBI:77746 ! human metabolite -relationship: has_role CHEBI:77974 ! food packaging gas -relationship: has_role CHEBI:78017 ! food propellant -relationship: has_role CHEBI:78433 ! refrigerant +relationship: RO:0000087 CHEBI:35620 ! has role vasodilator agent +relationship: RO:0000087 CHEBI:38867 ! has role anaesthetic +relationship: RO:0000087 CHEBI:46787 ! has role solvent +relationship: RO:0000087 CHEBI:48706 ! has role antagonist +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:76413 ! has role greenhouse gas +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite +relationship: RO:0000087 CHEBI:77974 ! has role food packaging gas +relationship: RO:0000087 CHEBI:78017 ! has role food propellant +relationship: RO:0000087 CHEBI:78433 ! has role refrigerant [Term] id: CHEBI:16541 @@ -2045,7 +2037,6 @@ synonym: "1-carboxy-4-hydroxy-alpha-oxo-2,5-cyclohexadiene-1-propanoic acid" REL synonym: "PREPHENIC ACID" EXACT [PDBeChem] synonym: "Prephenic acid" EXACT [KEGG_COMPOUND] xref: AGR:IND44654981 {source="Europe PMC"} -xref: Beilstein:2698270 {source="Beilstein"} xref: CAS:126-49-8 {source="ChemIDplus"} xref: DrugBank:DB08427 xref: HMDB:HMDB0012283 @@ -2058,10 +2049,10 @@ xref: PMID:155813 {source="Europe PMC"} xref: Reaxys:2698270 {source="Reaxys"} xref: Wikipedia:Prephenic_acid is_a: CHEBI:36145 ! oxo dicarboxylic acid -relationship: has_role CHEBI:76924 ! plant metabolite -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite relationship: is_conjugate_acid_of CHEBI:29934 ! (1s,4s)-prephenate(2-) relationship: is_conjugate_acid_of CHEBI:57852 ! prephenate(2-) +relationship: RO:0000087 CHEBI:76924 ! has role plant metabolite +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite [Term] id: CHEBI:16670 @@ -2126,7 +2117,6 @@ synonym: "Adenin" RELATED [NIST_Chemistry_WebBook] synonym: "ADENINE" EXACT [PDBeChem] synonym: "Adenine" EXACT [KEGG_COMPOUND] synonym: "adenine" EXACT [UniProt] -xref: Beilstein:608603 {source="Beilstein"} xref: CAS:73-24-5 {source="KEGG COMPOUND"} xref: CAS:73-24-5 {source="ChemIDplus"} xref: CAS:73-24-5 {source="NIST Chemistry WebBook"} @@ -2152,11 +2142,11 @@ is_a: BFO:0000004 ! independent continuant is_a: CHEBI:20706 ! 6-aminopurines is_a: CHEBI:26386 ! purine nucleobase relationship: has_parent_hydride CHEBI:35589 ! 9H-purine -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite -relationship: has_role CHEBI:77746 ! human metabolite -relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite +relationship: RO:0000087 CHEBI:83056 ! has role Daphnia magna metabolite [Term] id: CHEBI:16716 @@ -2186,7 +2176,6 @@ synonym: "Phene" RELATED [ChemIDplus] synonym: "phenyl hydride" RELATED [UM-BBD] synonym: "Pyrobenzol" RELATED [ChemIDplus] synonym: "Pyrobenzole" RELATED [ChemIDplus] -xref: Beilstein:969212 {source="Beilstein"} xref: CAS:71-43-2 {source="ChemIDplus"} xref: CAS:71-43-2 {source="NIST Chemistry WebBook"} xref: CAS:71-43-2 {source="KEGG COMPOUND"} @@ -2220,9 +2209,9 @@ is_a: BFO:0000004 ! independent continuant is_a: CHEBI:134179 ! volatile organic compound is_a: CHEBI:22712 ! benzenes is_a: CHEBI:33842 ! aromatic annulene -relationship: has_role CHEBI:48355 ! non-polar solvent -relationship: has_role CHEBI:50903 ! carcinogenic agent -relationship: has_role CHEBI:78298 ! environmental contaminant +relationship: RO:0000087 CHEBI:48355 ! has role non-polar solvent +relationship: RO:0000087 CHEBI:50903 ! has role carcinogenic agent +relationship: RO:0000087 CHEBI:78298 ! has role environmental contaminant [Term] id: CHEBI:167164 @@ -2237,7 +2226,7 @@ synonym: "nutrient minerals" RELATED [ChEBI] xref: Wikipedia:Mineral_(nutrient) is_a: BFO:0000004 ! independent continuant is_a: CHEBI:46662 ! mineral -relationship: has_role CHEBI:33284 ! nutrient +relationship: RO:0000087 CHEBI:33284 ! has role nutrient [Term] id: CHEBI:16733 @@ -2282,7 +2271,6 @@ synonym: "Adenosine 5'-diphosphate" RELATED [KEGG_COMPOUND] synonym: "ADENOSINE-5'-DIPHOSPHATE" RELATED [PDBeChem] synonym: "ADP" EXACT [KEGG_COMPOUND] synonym: "H3adp" RELATED [IUPAC] -xref: Beilstein:67722 {source="Beilstein"} xref: CAS:20398-34-9 {source="KEGG COMPOUND"} xref: CAS:58-64-0 {source="ChemIDplus"} xref: CAS:58-64-0 {source="KEGG COMPOUND"} @@ -2297,10 +2285,10 @@ xref: PMID:16295522 {source="Europe PMC"} xref: Reaxys:67722 {source="Reaxys"} is_a: CHEBI:37038 ! purine ribonucleoside 5'-diphosphate is_a: CHEBI:37096 ! adenosine 5'-phosphate -relationship: has_role CHEBI:77746 ! human metabolite -relationship: has_role CHEBI:78675 ! fundamental metabolite relationship: is_conjugate_acid_of CHEBI:456216 ! ADP(3-) relationship: is_conjugate_acid_of CHEBI:87518 ! ADP(2-) +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite +relationship: RO:0000087 CHEBI:78675 ! has role fundamental metabolite [Term] id: CHEBI:16765 @@ -2318,7 +2306,6 @@ synonym: "2-(1H-indol-3-yl)ethanamine" EXACT IUPAC_NAME [IUPAC] synonym: "2-(3-indolyl)ethylamine" RELATED [ChemIDplus] synonym: "3-(2-Aminoethyl)indole" RELATED [KEGG_COMPOUND] synonym: "Tryptamine" EXACT [KEGG_COMPOUND] -xref: Beilstein:125513 {source="Beilstein"} xref: CAS:61-54-1 {source="ChemIDplus"} xref: CAS:61-54-1 {source="NIST Chemistry WebBook"} xref: CAS:61-54-1 {source="KEGG COMPOUND"} @@ -2339,10 +2326,10 @@ is_a: CHEBI:27162 ! tryptamines is_a: CHEBI:38631 ! aminoalkylindole is_a: CHEBI:38958 ! indole alkaloid is_a: CHEBI:64365 ! aralkylamino compound -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:76924 ! plant metabolite -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_base_of CHEBI:57887 ! tryptaminium +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:76924 ! has role plant metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:16796 @@ -2360,7 +2347,6 @@ synonym: "melatonine" RELATED [ChEBI] synonym: "N-[2-(5-methoxy-1H-indol-3-yl)ethyl]acetamide" EXACT IUPAC_NAME [IUPAC] synonym: "N-[2-(5-methoxyindol-3-yl)ethyl]acetamide" RELATED [NIST_Chemistry_WebBook] synonym: "N-Acetyl-5-methoxytryptamine" RELATED [KEGG_COMPOUND] -xref: Beilstein:205542 {source="Beilstein"} xref: CAS:73-31-4 {source="ChemIDplus"} xref: CAS:73-31-4 {source="NIST Chemistry WebBook"} xref: CAS:73-31-4 {source="KEGG COMPOUND"} @@ -2382,14 +2368,14 @@ is_a: BFO:0000004 ! independent continuant is_a: CHEBI:22160 ! acetamides is_a: CHEBI:27162 ! tryptamines relationship: has_functional_parent CHEBI:16765 ! tryptamine -relationship: has_role CHEBI:176497 ! geroprotector -relationship: has_role CHEBI:24621 ! hormone -relationship: has_role CHEBI:35488 ! central nervous system depressant -relationship: has_role CHEBI:35623 ! anticonvulsant -relationship: has_role CHEBI:48578 ! radical scavenger -relationship: has_role CHEBI:50847 ! immunological adjuvant -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:77746 ! human metabolite +relationship: RO:0000087 CHEBI:176497 ! has role geroprotector +relationship: RO:0000087 CHEBI:24621 ! has role hormone +relationship: RO:0000087 CHEBI:35488 ! has role central nervous system depressant +relationship: RO:0000087 CHEBI:35623 ! has role anticonvulsant +relationship: RO:0000087 CHEBI:48578 ! has role radical scavenger +relationship: RO:0000087 CHEBI:50847 ! has role immunological adjuvant +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:16862 @@ -2408,8 +2394,8 @@ synonym: "nucleoside diphosphates" RELATED [ChEBI] xref: KEGG:C00454 is_a: BFO:0000004 ! independent continuant is_a: CHEBI:25608 ! nucleoside phosphate -relationship: has_role CHEBI:75771 ! mouse metabolite relationship: is_conjugate_acid_of CHEBI:57930 ! nucleoside 5'-diphosphate(3-) +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite [Term] id: CHEBI:16865 @@ -2438,7 +2424,6 @@ synonym: "gamma-aminobutyric acid" EXACT [NIST_Chemistry_WebBook] synonym: "omega-aminobutyric acid" RELATED [NIST_Chemistry_WebBook] synonym: "piperidic acid" RELATED [ChemIDplus] synonym: "piperidinic acid" RELATED [ChemIDplus] -xref: Beilstein:906818 {source="Beilstein"} xref: BPDB:2298 xref: CAS:56-12-2 {source="ChemIDplus"} xref: CAS:56-12-2 {source="NIST Chemistry WebBook"} @@ -2463,12 +2448,12 @@ xref: Wikipedia:Gamma-Aminobutyric_acid is_a: CHEBI:25384 ! monocarboxylic acid is_a: CHEBI:33707 ! gamma-amino acid relationship: has_functional_parent CHEBI:30772 ! butyric acid -relationship: has_role CHEBI:25512 ! neurotransmitter -relationship: has_role CHEBI:62488 ! signalling molecule -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_acid_of CHEBI:30566 ! gamma-aminobutyrate relationship: is_tautomer_of CHEBI:59888 ! gamma-aminobutyric acid zwitterion +relationship: RO:0000087 CHEBI:25512 ! has role neurotransmitter +relationship: RO:0000087 CHEBI:62488 ! has role signalling molecule +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:16988 @@ -2486,9 +2471,9 @@ xref: PMID:24404872 {source="Europe PMC"} xref: PMID:24752650 {source="Europe PMC"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:33942 ! ribose -relationship: has_role CHEBI:77746 ! human metabolite -relationship: has_role CHEBI:78675 ! fundamental metabolite relationship: is_enantiomer_of CHEBI:46997 ! L-ribose +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite +relationship: RO:0000087 CHEBI:78675 ! has role fundamental metabolite [Term] id: CHEBI:16990 @@ -2508,7 +2493,6 @@ synonym: "Bilirubin" RELATED [KEGG_COMPOUND] synonym: "bilirubin" EXACT IUPAC_NAME [IUPAC] synonym: "bilirubin(Z,Z)" RELATED [ChEBI] synonym: "bilirubin-IXalpha" RELATED [ChEBI] -xref: Beilstein:74376 {source="Beilstein"} xref: CAS:635-65-4 {source="KEGG COMPOUND"} xref: CAS:635-65-4 {source="ChemIDplus"} xref: Gmelin:411033 {source="Gmelin"} @@ -2529,10 +2513,10 @@ xref: Wikipedia:Bilirubin is_a: CHEBI:35692 ! dicarboxylic acid is_a: CHEBI:36735 ! biladienes relationship: has_part CHEBI:142163 ! 24G7 epitope -relationship: has_role CHEBI:22586 ! antioxidant -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_acid_of CHEBI:57977 ! bilirubin(2-) +relationship: RO:0000087 CHEBI:22586 ! has role antioxidant +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:16991 @@ -2566,8 +2550,8 @@ is_a: BFO:0000004 ! independent continuant is_a: CHEBI:33696 ! nucleic acid relationship: has_part CHEBI:33793 ! canonical deoxyribonucleoside residue relationship: has_part CHEBI:50298 ! canonical deoxyribonucleotide residue -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:77746 ! human metabolite +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:16998 @@ -2587,7 +2571,6 @@ synonym: "D-Phenylalanine" EXACT [KEGG_COMPOUND] synonym: "D-phenylalanine" EXACT IUPAC_NAME [IUPAC] synonym: "DPN" RELATED [PDBeChem] synonym: "phenylalanine D-form" RELATED [ChemIDplus] -xref: Beilstein:2804068 {source="Beilstein"} xref: CAS:673-06-3 {source="KEGG COMPOUND"} xref: CAS:673-06-3 {source="ChemIDplus"} xref: DrugBank:DB02556 @@ -2638,7 +2621,6 @@ synonym: "Progesteron" RELATED [ChEBI] synonym: "PROGESTERONE" EXACT [PDBeChem] synonym: "Progesterone" EXACT [KEGG_COMPOUND] synonym: "progesterone" EXACT [UniProt] -xref: Beilstein:1915950 {source="Beilstein"} xref: CAS:57-83-0 {source="KEGG COMPOUND"} xref: CAS:57-83-0 {source="ChemIDplus"} xref: CAS:57-83-0 {source="NIST Chemistry WebBook"} @@ -2658,11 +2640,11 @@ is_a: CHEBI:36885 ! 20-oxo steroid is_a: CHEBI:47909 ! 3-oxo-Delta(4) steroid is_a: CHEBI:64600 ! C21-steroid hormone relationship: has_parent_hydride CHEBI:8386 ! pregnane -relationship: has_role CHEBI:49323 ! contraceptive drug -relationship: has_role CHEBI:59826 ! progestin -relationship: has_role CHEBI:70709 ! progesterone receptor agonist -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:77746 ! human metabolite +relationship: RO:0000087 CHEBI:49323 ! has role contraceptive drug +relationship: RO:0000087 CHEBI:59826 ! has role progestin +relationship: RO:0000087 CHEBI:70709 ! has role progesterone receptor agonist +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:17029 @@ -2686,10 +2668,10 @@ xref: KEGG:G10483 is_a: BFO:0000004 ! independent continuant is_a: CHEBI:21638 ! N-acylglucosamine is_a: CHEBI:22506 ! aminoglycan -relationship: has_role CHEBI:73336 ! vulnerary -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:77746 ! human metabolite +relationship: RO:0000087 CHEBI:73336 ! has role vulnerary +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:17087 @@ -2756,7 +2738,7 @@ xref: KEGG:C00293 xref: Wikipedia:Glucose is_a: BFO:0000004 ! independent continuant is_a: CHEBI:33917 ! aldohexose -relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: RO:0000087 CHEBI:78675 ! has role fundamental metabolite [Term] id: CHEBI:17258 @@ -2769,7 +2751,6 @@ subset: 3_STAR synonym: "7H-purine" EXACT IUPAC_NAME [IUPAC] synonym: "Purine" RELATED [KEGG_COMPOUND] synonym: "Purine base" RELATED [KEGG_COMPOUND] -xref: Beilstein:3200 {source="Beilstein"} xref: Gmelin:601779 {source="Gmelin"} xref: HMDB:HMDB0001366 xref: KEGG:C15587 @@ -2811,8 +2792,8 @@ xref: PMID:2647392 {source="Europe PMC"} xref: UM-BBD_compID:c0277 {source="UM-BBD"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:78113 ! fatty acid anion 3:0 -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_base_of CHEBI:30768 ! propionic acid +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:17295 @@ -2836,7 +2817,6 @@ synonym: "L-Phenylalanine" EXACT [KEGG_COMPOUND] synonym: "L-phenylalanine" EXACT IUPAC_NAME [IUPAC] synonym: "Phe" RELATED [ChEBI] synonym: "PHENYLALANINE" RELATED [PDBeChem] -xref: Beilstein:1910408 {source="Beilstein"} xref: CAS:63-91-2 {source="KEGG COMPOUND"} xref: CAS:63-91-2 {source="NIST Chemistry WebBook"} xref: CAS:63-91-2 {source="ChemIDplus"} @@ -2869,19 +2849,19 @@ xref: Wikipedia:Phenylalanine xref: YMDB:YMDB00304 is_a: CHEBI:28044 ! phenylalanine is_a: CHEBI:73690 ! erythrose 4-phosphate/phosphoenolpyruvate family amino acid -relationship: has_role CHEBI:27027 ! micronutrient -relationship: has_role CHEBI:50733 ! nutraceutical -relationship: has_role CHEBI:63332 ! EC 3.1.3.1 (alkaline phosphatase) inhibitor -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:76924 ! plant metabolite -relationship: has_role CHEBI:76967 ! human xenobiotic metabolite -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite -relationship: has_role CHEBI:84735 ! algal metabolite relationship: is_conjugate_acid_of CHEBI:32486 ! L-phenylalaninate relationship: is_conjugate_base_of CHEBI:32487 ! L-phenylalaninium relationship: is_enantiomer_of CHEBI:16998 ! D-phenylalanine relationship: is_tautomer_of CHEBI:58095 ! L-phenylalanine zwitterion +relationship: RO:0000087 CHEBI:27027 ! has role micronutrient +relationship: RO:0000087 CHEBI:50733 ! has role nutraceutical +relationship: RO:0000087 CHEBI:63332 ! has role EC 3.1.3.1 (alkaline phosphatase) inhibitor +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:76924 ! has role plant metabolite +relationship: RO:0000087 CHEBI:76967 ! has role human xenobiotic metabolite +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite +relationship: RO:0000087 CHEBI:84735 ! has role algal metabolite [Term] id: CHEBI:173084 @@ -2928,8 +2908,8 @@ synonym: "nucleoside triphosphates" RELATED [ChEBI] xref: KEGG:C00201 is_a: BFO:0000004 ! independent continuant is_a: CHEBI:25608 ! nucleoside phosphate -relationship: has_role CHEBI:75771 ! mouse metabolite relationship: is_conjugate_acid_of CHEBI:58104 ! nucleoside 5'-triphoshate(3-) +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite [Term] id: CHEBI:17347 @@ -2953,7 +2933,6 @@ synonym: "Testosterone" EXACT [KEGG_COMPOUND] synonym: "testosterone" EXACT [UniProt] synonym: "testosterone" RELATED INN [ChemIDplus] synonym: "testosteronum" RELATED INN [ChemIDplus] -xref: Beilstein:1915399 {source="Beilstein"} xref: Beilstein:3653705 {source="Beilstein"} xref: CAS:58-22-0 {source="NIST Chemistry WebBook"} xref: CAS:58-22-0 {source="ChemIDplus"} @@ -2978,10 +2957,10 @@ is_a: CHEBI:131621 ! C19-steroid is_a: CHEBI:35343 ! 17beta-hydroxy steroid is_a: CHEBI:47909 ! 3-oxo-Delta(4) steroid is_a: CHEBI:50402 ! androstanoid -relationship: has_role CHEBI:50113 ! androgen -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:77746 ! human metabolite -relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: RO:0000087 CHEBI:50113 ! has role androgen +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite +relationship: RO:0000087 CHEBI:83056 ! has role Daphnia magna metabolite [Term] id: CHEBI:17478 @@ -3055,13 +3034,13 @@ xref: PMID:4208463 {source="Europe PMC"} xref: Wikipedia:Bicarbonate is_a: BFO:0000004 ! independent continuant is_a: CHEBI:35604 ! carbon oxoanion -relationship: has_role CHEBI:23357 ! cofactor -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_acid_of CHEBI:41609 ! carbonate relationship: is_conjugate_base_of CHEBI:28976 ! carbonic acid +relationship: RO:0000087 CHEBI:23357 ! has role cofactor +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:17578 @@ -3082,7 +3061,6 @@ synonym: "toluene" EXACT [ChEBI] synonym: "toluene" EXACT [UniProt] synonym: "toluene" EXACT IUPAC_NAME [IUPAC] synonym: "Toluol" RELATED [NIST_Chemistry_WebBook] -xref: Beilstein:635760 {source="Beilstein"} xref: CAS:108-88-3 {source="KEGG COMPOUND"} xref: CAS:108-88-3 {source="NIST Chemistry WebBook"} xref: CAS:108-88-3 {source="ChemIDplus"} @@ -3141,10 +3119,10 @@ is_a: BFO:0000004 ! independent continuant is_a: CHEBI:134179 ! volatile organic compound is_a: CHEBI:27024 ! toluenes is_a: CHEBI:38975 ! methylbenzene -relationship: has_role CHEBI:48355 ! non-polar solvent -relationship: has_role CHEBI:48873 ! cholinergic antagonist -relationship: has_role CHEBI:50910 ! neurotoxin -relationship: has_role CHEBI:62803 ! fuel additive +relationship: RO:0000087 CHEBI:48355 ! has role non-polar solvent +relationship: RO:0000087 CHEBI:48873 ! has role cholinergic antagonist +relationship: RO:0000087 CHEBI:50910 ! has role neurotoxin +relationship: RO:0000087 CHEBI:62803 ! has role fuel additive [Term] id: CHEBI:17579 @@ -3163,7 +3141,6 @@ synonym: "beta,beta-carotene" EXACT IUPAC_NAME [IUPAC] synonym: "BETA-CAROTENE" EXACT [PDBeChem] synonym: "beta-Carotene" EXACT [KEGG_COMPOUND] synonym: "beta-Karotin" RELATED [ChEBI] -xref: Beilstein:1917416 {source="Beilstein"} xref: CAS:7235-40-7 {source="ChemIDplus"} xref: CAS:7235-40-7 {source="NIST Chemistry WebBook"} xref: CAS:7235-40-7 {source="KEGG COMPOUND"} @@ -3232,14 +3209,14 @@ xref: Wikipedia:Beta_Carotene is_a: BFO:0000004 ! independent continuant is_a: CHEBI:139120 ! carotenoid beta-end derivative is_a: CHEBI:35163 ! cyclic carotene -relationship: has_role CHEBI:173084 ! ferroptosis inhibitor -relationship: has_role CHEBI:22586 ! antioxidant -relationship: has_role CHEBI:23357 ! cofactor -relationship: has_role CHEBI:26130 ! biological pigment -relationship: has_role CHEBI:67200 ! provitamin A -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:76924 ! plant metabolite -relationship: has_role CHEBI:77746 ! human metabolite +relationship: RO:0000087 CHEBI:173084 ! has role ferroptosis inhibitor +relationship: RO:0000087 CHEBI:22586 ! has role antioxidant +relationship: RO:0000087 CHEBI:23357 ! has role cofactor +relationship: RO:0000087 CHEBI:26130 ! has role biological pigment +relationship: RO:0000087 CHEBI:67200 ! has role provitamin A +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:76924 ! has role plant metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:17608 @@ -3370,7 +3347,6 @@ synonym: "Tyr" RELATED [ChEBI] synonym: "TYROSINE" RELATED [PDBeChem] synonym: "Tyrosine" RELATED [KEGG_COMPOUND] synonym: "Y" RELATED [ChEBI] -xref: Beilstein:392441 {source="Beilstein"} xref: CAS:60-18-4 {source="ChemIDplus"} xref: CAS:60-18-4 {source="NIST Chemistry WebBook"} xref: CAS:60-18-4 {source="KEGG COMPOUND"} @@ -3394,14 +3370,14 @@ xref: YMDB:YMDB00364 is_a: CHEBI:18186 ! tyrosine is_a: CHEBI:73690 ! erythrose 4-phosphate/phosphoenolpyruvate family amino acid relationship: has_functional_parent CHEBI:46209 ! L-tyrosinal -relationship: has_role CHEBI:27027 ! micronutrient -relationship: has_role CHEBI:50733 ! nutraceutical -relationship: has_role CHEBI:64416 ! EC 1.3.1.43 (arogenate dehydrogenase) inhibitor -relationship: has_role CHEBI:78675 ! fundamental metabolite relationship: is_conjugate_acid_of CHEBI:32760 ! L-tyrosinate(1-) relationship: is_conjugate_base_of CHEBI:32762 ! L-tyrosinium relationship: is_enantiomer_of CHEBI:28479 ! D-tyrosine relationship: is_tautomer_of CHEBI:58315 ! L-tyrosine zwitterion +relationship: RO:0000087 CHEBI:27027 ! has role micronutrient +relationship: RO:0000087 CHEBI:50733 ! has role nutraceutical +relationship: RO:0000087 CHEBI:64416 ! has role EC 1.3.1.43 (arogenate dehydrogenase) inhibitor +relationship: RO:0000087 CHEBI:78675 ! has role fundamental metabolite [Term] id: CHEBI:17968 @@ -3425,7 +3401,6 @@ synonym: "n-butanoate" RELATED [ChEBI] synonym: "n-butyrate" RELATED [ChemIDplus] synonym: "propanecarboxylate" RELATED [ChEBI] synonym: "propylformate" RELATED [ChEBI] -xref: Beilstein:3601060 {source="Beilstein"} xref: CAS:461-55-2 {source="ChemIDplus"} xref: Gmelin:324289 {source="Gmelin"} xref: KEGG:C00246 @@ -3436,10 +3411,10 @@ xref: Reaxys:3601060 {source="Reaxys"} xref: UM-BBD_compID:c0035 {source="UM-BBD"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:78115 ! fatty acid anion 4:0 -relationship: has_role CHEBI:25212 ! metabolite -relationship: has_role CHEBI:61115 ! EC 3.5.1.98 (histone deacetylase) inhibitor -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_base_of CHEBI:30772 ! butyric acid +relationship: RO:0000087 CHEBI:25212 ! has role metabolite +relationship: RO:0000087 CHEBI:61115 ! has role EC 3.5.1.98 (histone deacetylase) inhibitor +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:17972 @@ -3545,7 +3520,6 @@ synonym: "Tyrosin" RELATED [ChEBI] synonym: "Tyrosine" EXACT [KEGG_COMPOUND] synonym: "tyrosine" EXACT IUPAC_NAME [IUPAC] synonym: "Y" RELATED [ChEBI] -xref: Beilstein:515881 {source="Beilstein"} xref: CAS:55520-40-6 {source="ChemIDplus"} xref: CAS:556-03-6 {source="KEGG COMPOUND"} xref: Gmelin:27744 {source="Gmelin"} @@ -3558,9 +3532,9 @@ is_a: CHEBI:33704 ! alpha-amino acid is_a: CHEBI:33856 ! aromatic amino acid relationship: has_functional_parent CHEBI:30768 ! propionic acid relationship: has_part CHEBI:50336 ! 4-hydroxybenzyl group -relationship: has_role CHEBI:83056 ! Daphnia magna metabolite relationship: is_conjugate_acid_of CHEBI:32784 ! tyrosinate(1-) relationship: is_conjugate_base_of CHEBI:32786 ! tyrosinium +relationship: RO:0000087 CHEBI:83056 ! has role Daphnia magna metabolite [Term] id: CHEBI:18237 @@ -3581,7 +3555,6 @@ synonym: "Glutamic acid" EXACT [KEGG_COMPOUND] synonym: "glutamic acid" EXACT IUPAC_NAME [IUPAC] synonym: "Glutaminic acid" RELATED [KEGG_COMPOUND] synonym: "Glutaminsaeure" RELATED [ChEBI] -xref: Beilstein:1723799 {source="Beilstein"} xref: CAS:617-65-2 {source="ChemIDplus"} xref: CAS:617-65-2 {source="NIST Chemistry WebBook"} xref: CAS:617-65-2 {source="KEGG COMPOUND"} @@ -3599,8 +3572,8 @@ xref: Wikipedia:Glutamic_acid is_a: CHEBI:26167 ! polar amino acid is_a: CHEBI:33704 ! alpha-amino acid relationship: has_part CHEBI:50329 ! 2-carboxyethyl group -relationship: has_role CHEBI:78675 ! fundamental metabolite relationship: is_conjugate_acid_of CHEBI:14321 ! glutamate(1-) +relationship: RO:0000087 CHEBI:78675 ! has role fundamental metabolite [Term] id: CHEBI:18243 @@ -3645,14 +3618,14 @@ xref: PMID:9422813 {source="Europe PMC"} xref: Reaxys:1072822 {source="Reaxys"} xref: Wikipedia:Dopamine is_a: CHEBI:33567 ! catecholamine -relationship: has_role CHEBI:35522 ! beta-adrenergic agonist -relationship: has_role CHEBI:35524 ! sympathomimetic agent -relationship: has_role CHEBI:38147 ! cardiotonic drug -relationship: has_role CHEBI:48560 ! dopaminergic agent -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_base_of CHEBI:59905 ! dopaminium(1+) +relationship: RO:0000087 CHEBI:35522 ! has role beta-adrenergic agonist +relationship: RO:0000087 CHEBI:35524 ! has role sympathomimetic agent +relationship: RO:0000087 CHEBI:38147 ! has role cardiotonic drug +relationship: RO:0000087 CHEBI:48560 ! has role dopaminergic agent +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:18246 @@ -3708,8 +3681,8 @@ xref: Reaxys:4122945 {source="Reaxys"} xref: WebElements:Fe is_a: BFO:0000004 ! independent continuant is_a: CHEBI:33356 ! iron group element atom -relationship: has_role CHEBI:27027 ! micronutrient -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: RO:0000087 CHEBI:27027 ! has role micronutrient +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite [Term] id: CHEBI:18254 @@ -3761,7 +3734,6 @@ synonym: "2-(1H-imidazol-4-yl)ethanamine" EXACT IUPAC_NAME [IUPAC] synonym: "2-(4-Imidazolyl)ethylamine" RELATED [KEGG_COMPOUND] synonym: "HISTAMINE" EXACT [PDBeChem] synonym: "Histamine" EXACT [KEGG_COMPOUND] -xref: Beilstein:2012 {source="Beilstein"} xref: CAS:51-45-6 {source="NIST Chemistry WebBook"} xref: CAS:51-45-6 {source="ChemIDplus"} xref: CAS:51-45-6 {source="KEGG COMPOUND"} @@ -3782,10 +3754,10 @@ xref: Reaxys:2012 {source="Reaxys"} xref: Wikipedia:Histamine is_a: CHEBI:24780 ! imidazoles is_a: CHEBI:64365 ! aralkylamino compound -relationship: has_role CHEBI:25512 ! neurotransmitter -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_base_of CHEBI:58432 ! histaminium +relationship: RO:0000087 CHEBI:25512 ! has role neurotransmitter +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:18310 @@ -3838,7 +3810,6 @@ synonym: "Norepinephrine" RELATED [KEGG_COMPOUND] synonym: "norepinephrine" RELATED INN [ChemIDplus] synonym: "norepinephrine" RELATED INN [WHO_MedNet] synonym: "norepinephrinum" RELATED INN [ChEBI] -xref: Beilstein:2804840 {source="Beilstein"} xref: Beilstein:4231961 {source="ChemIDplus"} xref: CAS:51-41-2 {source="ChemIDplus"} xref: CAS:51-41-2 {source="KEGG COMPOUND"} @@ -3852,13 +3823,13 @@ xref: PDBeChem:LNR xref: Reaxys:2804840 {source="Reaxys"} xref: Wikipedia:Norepinephrine is_a: CHEBI:33569 ! noradrenaline -relationship: has_role CHEBI:25512 ! neurotransmitter -relationship: has_role CHEBI:35524 ! sympathomimetic agent -relationship: has_role CHEBI:35569 ! alpha-adrenergic agonist -relationship: has_role CHEBI:50514 ! vasoconstrictor agent -relationship: has_role CHEBI:75771 ! mouse metabolite relationship: is_conjugate_base_of CHEBI:72587 ! (R)-noradrenaline(1+) relationship: is_enantiomer_of CHEBI:33571 ! (S)-noradrenaline +relationship: RO:0000087 CHEBI:25512 ! has role neurotransmitter +relationship: RO:0000087 CHEBI:35524 ! has role sympathomimetic agent +relationship: RO:0000087 CHEBI:35569 ! has role alpha-adrenergic agonist +relationship: RO:0000087 CHEBI:50514 ! has role vasoconstrictor agent +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite [Term] id: CHEBI:18367 @@ -3878,7 +3849,6 @@ synonym: "PO4(3-)" RELATED [IUPAC] synonym: "tetraoxidophosphate(3-)" EXACT IUPAC_NAME [IUPAC] synonym: "tetraoxophosphate(3-)" EXACT IUPAC_NAME [IUPAC] synonym: "tetraoxophosphate(V)" EXACT IUPAC_NAME [IUPAC] -xref: Beilstein:3903772 {source="Beilstein"} xref: CAS:14265-44-2 {source="KEGG COMPOUND"} xref: CAS:14265-44-2 {source="ChemIDplus"} xref: Gmelin:1997 {source="Gmelin"} @@ -4062,7 +4032,7 @@ synonym: "alkaloids" EXACT IUPAC_NAME [IUPAC] xref: Wikipedia:Alkaloid is_a: BFO:0000004 ! independent continuant is_a: CHEBI:35352 ! organonitrogen compound -relationship: has_role CHEBI:25212 ! metabolite +relationship: RO:0000087 CHEBI:25212 ! has role metabolite [Term] id: CHEBI:22492 @@ -4169,7 +4139,7 @@ relationship: is_substituent_group_from CHEBI:17578 ! toluene id: CHEBI:228364 name: NMR chemical shift reference compound namespace: chebi_ontology -def: "Any compound that produces a peak used to reference an NMR spectrum during data pre-processing." [] +def: "Any compound that produces a peak used as reference frequency in the delta chemical shift scale." [] subset: 3_STAR synonym: "NMR chemical shift reference compounds" RELATED [ChEBI] synonym: "NMR chemical shift standard" RELATED [ChEBI] @@ -4212,7 +4182,7 @@ xref: KEGG:C00076 xref: WebElements:Ca is_a: BFO:0000004 ! independent continuant is_a: CHEBI:22313 ! alkaline earth metal atom -relationship: has_role CHEBI:33937 ! macronutrient +relationship: RO:0000087 CHEBI:33937 ! has role macronutrient [Term] id: CHEBI:22985 @@ -4388,8 +4358,8 @@ namespace: chebi_ontology subset: 2_STAR is_a: CHEBI:37045 ! purine ribonucleoside 5'-triphosphate is_a: CHEBI:37096 ! adenosine 5'-phosphate -relationship: has_role CHEBI:50733 ! nutraceutical relationship: is_conjugate_acid_of CHEBI:57299 ! ATP(3-) +relationship: RO:0000087 CHEBI:50733 ! has role nutraceutical [Term] id: CHEBI:23888 @@ -4647,7 +4617,7 @@ synonym: "oxy-acids" RELATED [ChEBI] synonym: "oxyacids" RELATED [ChEBI] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:24651 ! hydroxides -relationship: has_role CHEBI:39141 ! Bronsted acid +relationship: RO:0000087 CHEBI:39141 ! has role Bronsted acid [Term] id: CHEBI:24834 @@ -4764,7 +4734,7 @@ synonym: "iron cations" RELATED [ChEBI] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:33515 ! transition element cation is_a: CHEBI:82663 ! elemental iron -relationship: has_role CHEBI:23357 ! cofactor +relationship: RO:0000087 CHEBI:23357 ! has role cofactor [Term] id: CHEBI:24913 @@ -4789,8 +4759,8 @@ subset: 3_STAR xref: Wikipedia:Juvenile_hormone is_a: BFO:0000004 ! independent continuant is_a: CHEBI:36757 ! farnesane sesquiterpenoid -relationship: has_role CHEBI:24621 ! hormone -relationship: has_role CHEBI:75767 ! animal metabolite +relationship: RO:0000087 CHEBI:24621 ! has role hormone +relationship: RO:0000087 CHEBI:75767 ! has role animal metabolite [Term] id: CHEBI:25046 @@ -4865,7 +4835,7 @@ subset: 3_STAR synonym: "monamines" RELATED [ChEBI] synonym: "monoamines" RELATED [ChEBI] is_a: CHEBI:63534 ! monoamine -relationship: has_role CHEBI:33280 ! molecular messenger +relationship: RO:0000087 CHEBI:33280 ! has role molecular messenger [Term] id: CHEBI:25384 @@ -4922,7 +4892,7 @@ xref: WebElements:N is_a: BFO:0000004 ! independent continuant is_a: CHEBI:25585 ! nonmetal atom is_a: CHEBI:33300 ! pnictogen -relationship: has_role CHEBI:33937 ! macronutrient +relationship: RO:0000087 CHEBI:33937 ! has role macronutrient [Term] id: CHEBI:25585 @@ -5079,7 +5049,7 @@ xref: WebElements:O is_a: BFO:0000004 ! independent continuant is_a: CHEBI:25585 ! nonmetal atom is_a: CHEBI:33303 ! chalcogen -relationship: has_role CHEBI:33937 ! macronutrient +relationship: RO:0000087 CHEBI:33937 ! has role macronutrient [Term] id: CHEBI:25806 @@ -5120,7 +5090,7 @@ subset: 3_STAR synonym: "peptide hormones" RELATED [ChEBI] synonym: "polypeptide hormone" RELATED [ChEBI] is_a: CHEBI:16670 ! peptide -relationship: has_role CHEBI:24621 ! hormone +relationship: RO:0000087 CHEBI:24621 ! has role hormone [Term] id: CHEBI:25985 @@ -5128,7 +5098,7 @@ name: phenylalanine derivative namespace: chebi_ontology def: "An amino acid derivative resulting from reaction of alanine at the amino group or the carboxy group, or from the replacement of any hydrogen of phenylalanine by a heteroatom. The definition normally excludes peptides containing phenylalanine residues." [] subset: 3_STAR -is_a: CHEBI:83821 ! amino acid derivative +is_a: CHEBI:83821 ! amino-acid derivative relationship: has_functional_parent CHEBI:28044 ! phenylalanine [Term] @@ -5147,7 +5117,7 @@ name: phosphoamino acid namespace: chebi_ontology subset: 3_STAR synonym: "phosphoamino acids" RELATED [ChEBI] -is_a: CHEBI:83821 ! amino acid derivative +is_a: CHEBI:83821 ! amino-acid derivative [Term] id: CHEBI:26078 @@ -5169,7 +5139,6 @@ synonym: "Phosphorsaeureloesungen" RELATED [ChEBI] synonym: "tetraoxophosphoric acid" EXACT IUPAC_NAME [IUPAC] synonym: "trihydrogen tetraoxophosphate(3-)" EXACT IUPAC_NAME [IUPAC] synonym: "trihydroxidooxidophosphorus" EXACT IUPAC_NAME [IUPAC] -xref: Beilstein:1921286 {source="Beilstein"} xref: CAS:7664-38-2 {source="NIST Chemistry WebBook"} xref: CAS:7664-38-2 {source="KEGG COMPOUND"} xref: CAS:7664-38-2 {source="ChemIDplus"} @@ -5190,13 +5159,13 @@ xref: PMID:22401268 {source="Europe PMC"} xref: Reaxys:1921286 {source="Reaxys"} xref: Wikipedia:Phosphoric_Acid is_a: CHEBI:59698 ! phosphoric acids -relationship: has_role CHEBI:228364 ! NMR chemical shift reference compound -relationship: has_role CHEBI:33287 ! fertilizer -relationship: has_role CHEBI:46787 ! solvent -relationship: has_role CHEBI:77746 ! human metabolite -relationship: has_role CHEBI:84735 ! algal metabolite relationship: is_conjugate_acid_of CHEBI:35780 ! phosphate ion relationship: is_conjugate_acid_of CHEBI:39745 ! dihydrogenphosphate +relationship: RO:0000087 CHEBI:228364 ! has role NMR chemical shift reference compound +relationship: RO:0000087 CHEBI:33287 ! has role fertilizer +relationship: RO:0000087 CHEBI:46787 ! has role solvent +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite +relationship: RO:0000087 CHEBI:84735 ! has role algal metabolite [Term] id: CHEBI:26079 @@ -5250,7 +5219,38 @@ synonym: "porphyrins" EXACT IUPAC_NAME [IUPAC] xref: Wikipedia:Porphyrin is_a: BFO:0000004 ! independent continuant is_a: CHEBI:36309 ! cyclic tetrapyrrole -relationship: has_role CHEBI:23357 ! cofactor +relationship: RO:0000087 CHEBI:23357 ! has role cofactor + +[Term] +id: CHEBI:26216 +name: potassium atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "19K" RELATED [IUPAC] +synonym: "K" RELATED [IUPAC] +synonym: "Kalium" RELATED [ChemIDplus] +synonym: "kalium" RELATED [IUPAC] +synonym: "potasio" RELATED [ChEBI] +synonym: "potassium" EXACT IUPAC_NAME [IUPAC] +synonym: "potassium" RELATED [ChEBI] +xref: CAS:7440-09-7 {source="ChemIDplus"} +xref: DrugBank:DB01345 +xref: KEGG:C00238 +xref: WebElements:K +is_a: BFO:0000004 ! independent continuant +is_a: CHEBI:22314 ! alkali metal atom +relationship: RO:0000087 CHEBI:33937 ! has role macronutrient +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite + +[Term] +id: CHEBI:26217 +name: potassium molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "potassium molecular entities" RELATED [ChEBI] +synonym: "potassium molecular entity" EXACT [ChEBI] +is_a: CHEBI:33296 ! alkali metal molecular entity +relationship: has_part CHEBI:26216 ! potassium atom [Term] id: CHEBI:26386 @@ -5437,8 +5437,8 @@ xref: KEGG:C01330 xref: WebElements:Na is_a: BFO:0000004 ! independent continuant is_a: CHEBI:22314 ! alkali metal atom -relationship: has_role CHEBI:33937 ! macronutrient -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:33937 ! has role macronutrient +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite [Term] id: CHEBI:26712 @@ -5489,7 +5489,7 @@ synonym: "Steroidhormon" RELATED [ChEBI] synonym: "Steroidhormone" RELATED [ChEBI] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:35341 ! steroid -relationship: has_role CHEBI:24621 ! hormone +relationship: RO:0000087 CHEBI:24621 ! has role hormone [Term] id: CHEBI:26816 @@ -5550,7 +5550,7 @@ xref: WebElements:S is_a: BFO:0000004 ! independent continuant is_a: CHEBI:25585 ! nonmetal atom is_a: CHEBI:33303 ! chalcogen -relationship: has_role CHEBI:33937 ! macronutrient +relationship: RO:0000087 CHEBI:33937 ! has role macronutrient [Term] id: CHEBI:26835 @@ -5606,8 +5606,8 @@ xref: PPDB:606 xref: Reaxys:2037554 {source="Reaxys"} xref: Wikipedia:Sulfuric_acid is_a: CHEBI:33402 ! sulfur oxoacid -relationship: has_role CHEBI:35223 ! catalyst relationship: is_conjugate_acid_of CHEBI:45696 ! hydrogensulfate +relationship: RO:0000087 CHEBI:35223 ! has role catalyst [Term] id: CHEBI:26873 @@ -5785,9 +5785,9 @@ xref: Wikipedia:Zeaxanthin is_a: BFO:0000004 ! independent continuant is_a: CHEBI:23045 ! carotenol relationship: has_parent_hydride CHEBI:17579 ! beta-carotene -relationship: has_role CHEBI:22586 ! antioxidant -relationship: has_role CHEBI:23357 ! cofactor -relationship: has_role CHEBI:76969 ! bacterial metabolite +relationship: RO:0000087 CHEBI:22586 ! has role antioxidant +relationship: RO:0000087 CHEBI:23357 ! has role cofactor +relationship: RO:0000087 CHEBI:76969 ! has role bacterial metabolite [Term] id: CHEBI:27584 @@ -5805,7 +5805,6 @@ synonym: "11beta,21-dihydroxy-3,20-dioxopregn-4-en-18-al" EXACT IUPAC_NAME [IUPA synonym: "ALDOSTERONE" EXACT [PDBeChem] synonym: "Aldosterone" EXACT [KEGG_COMPOUND] synonym: "aldosterone" EXACT [UniProt] -xref: Beilstein:3224996 {source="ChemIDplus"} xref: CAS:52-39-1 {source="ChemIDplus"} xref: CAS:52-39-1 {source="NIST Chemistry WebBook"} xref: CAS:52-39-1 {source="KEGG COMPOUND"} @@ -5829,8 +5828,8 @@ is_a: CHEBI:36887 ! 18-oxo steroid is_a: CHEBI:47909 ! 3-oxo-Delta(4) steroid is_a: CHEBI:64600 ! C21-steroid hormone relationship: has_parent_hydride CHEBI:8386 ! pregnane -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:77746 ! human metabolite +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:27594 @@ -5856,7 +5855,7 @@ xref: WebElements:C is_a: BFO:0000004 ! independent continuant is_a: CHEBI:25585 ! nonmetal atom is_a: CHEBI:33306 ! carbon group element atom -relationship: has_role CHEBI:33937 ! macronutrient +relationship: RO:0000087 CHEBI:33937 ! has role macronutrient [Term] id: CHEBI:28044 @@ -5876,7 +5875,6 @@ synonym: "Phenylalanin" RELATED [ChEBI] synonym: "Phenylalanine" EXACT [KEGG_COMPOUND] synonym: "phenylalanine" EXACT [ChEBI] synonym: "phenylalanine" EXACT IUPAC_NAME [IUPAC] -xref: Beilstein:1910407 {source="Beilstein"} xref: CAS:150-30-1 {source="ChemIDplus"} xref: CAS:150-30-1 {source="NIST Chemistry WebBook"} xref: Gmelin:50836 {source="Gmelin"} @@ -5888,9 +5886,9 @@ xref: Wikipedia:Phenylalanine is_a: CHEBI:33704 ! alpha-amino acid is_a: CHEBI:33856 ! aromatic amino acid relationship: has_part CHEBI:22744 ! benzyl group -relationship: has_role CHEBI:83056 ! Daphnia magna metabolite relationship: is_conjugate_acid_of CHEBI:32504 ! phenylalaninate relationship: is_conjugate_base_of CHEBI:32505 ! phenylalaninium +relationship: RO:0000087 CHEBI:83056 ! has role Daphnia magna metabolite [Term] id: CHEBI:28087 @@ -5914,8 +5912,8 @@ xref: MetaCyc:CPD0-971 xref: Wikipedia:Glycogen is_a: BFO:0000004 ! independent continuant is_a: CHEBI:24384 ! glycogens -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite [Term] id: CHEBI:28425 @@ -5943,8 +5941,8 @@ xref: Reaxys:2682045 {source="Reaxys"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:139120 ! carotenoid beta-end derivative is_a: CHEBI:35163 ! cyclic carotene -relationship: has_role CHEBI:67200 ! provitamin A -relationship: has_role CHEBI:76924 ! plant metabolite +relationship: RO:0000087 CHEBI:67200 ! has role provitamin A +relationship: RO:0000087 CHEBI:76924 ! has role plant metabolite [Term] id: CHEBI:28479 @@ -5964,7 +5962,6 @@ synonym: "D-TYROSINE" EXACT [PDBeChem] synonym: "D-Tyrosine" EXACT [KEGG_COMPOUND] synonym: "D-tyrosine" EXACT IUPAC_NAME [IUPAC] synonym: "DTY" RELATED [PDBeChem] -xref: Beilstein:2212157 {source="Beilstein"} xref: CAS:556-02-5 {source="ChemIDplus"} xref: CAS:556-02-5 {source="KEGG COMPOUND"} xref: DrugBank:DB03839 @@ -5980,11 +5977,11 @@ xref: Reaxys:2212157 {source="Reaxys"} xref: YMDB:YMDB00805 is_a: CHEBI:16733 ! D-alpha-amino acid is_a: CHEBI:18186 ! tyrosine -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite relationship: is_conjugate_acid_of CHEBI:32773 ! D-tyrosinate(1-) relationship: is_conjugate_base_of CHEBI:32775 ! D-tyrosinium relationship: is_enantiomer_of CHEBI:17895 ! L-tyrosine relationship: is_tautomer_of CHEBI:58570 ! D-tyrosine zwitterion +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite [Term] id: CHEBI:28616 @@ -6014,8 +6011,8 @@ xref: Wikipedia:Carbamic_acid is_a: CHEBI:35352 ! organonitrogen compound is_a: CHEBI:35605 ! carbon oxoacid is_a: CHEBI:64708 ! one-carbon compound -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite relationship: is_conjugate_acid_of CHEBI:13941 ! carbamate +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite [Term] id: CHEBI:28659 @@ -6041,7 +6038,7 @@ xref: WebElements:P is_a: BFO:0000004 ! independent continuant is_a: CHEBI:25585 ! nonmetal atom is_a: CHEBI:33300 ! pnictogen -relationship: has_role CHEBI:33937 ! macronutrient +relationship: RO:0000087 CHEBI:33937 ! has role macronutrient [Term] id: CHEBI:28790 @@ -6062,7 +6059,6 @@ synonym: "Serotonin" EXACT [KEGG_COMPOUND] synonym: "serotonine" RELATED [ChEBI] synonym: "thrombocytin" RELATED [ChemIDplus] synonym: "thrombotonin" RELATED [ChemIDplus] -xref: Beilstein:143524 {source="Beilstein"} xref: CAS:50-67-9 {source="KEGG COMPOUND"} xref: CAS:50-67-9 {source="ChemIDplus"} xref: Gmelin:1861995 {source="Gmelin"} @@ -6083,10 +6079,10 @@ is_a: CHEBI:33853 ! phenols is_a: CHEBI:50994 ! primary amino compound is_a: CHEBI:84729 ! hydroxyindoles relationship: has_functional_parent CHEBI:16765 ! tryptamine -relationship: has_role CHEBI:25512 ! neurotransmitter -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_base_of CHEBI:350546 ! serotonin(1+) +relationship: RO:0000087 CHEBI:25512 ! has role neurotransmitter +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:28793 @@ -6118,7 +6114,6 @@ synonym: "E 161b" RELATED [ChEBI] synonym: "Lutein" EXACT [KEGG_COMPOUND] synonym: "lutein" EXACT [UniProt] synonym: "Xanthophyll" RELATED [KEGG_COMPOUND] -xref: Beilstein:2068550 {source="Beilstein"} xref: CAS:127-40-2 {source="ChemIDplus"} xref: CAS:127-40-2 {source="KEGG COMPOUND"} xref: Drug_Central:4145 {source="DrugCentral"} @@ -6138,8 +6133,8 @@ xref: Wikipedia:Lutein is_a: BFO:0000004 ! independent continuant is_a: CHEBI:23045 ! carotenol relationship: has_parent_hydride CHEBI:35147 ! (6'R)-beta,epsilon-carotene -relationship: has_role CHEBI:76924 ! plant metabolite -relationship: has_role CHEBI:77182 ! food colouring +relationship: RO:0000087 CHEBI:76924 ! has role plant metabolite +relationship: RO:0000087 CHEBI:77182 ! has role food colouring [Term] id: CHEBI:28868 @@ -6198,7 +6193,6 @@ synonym: "Epipen JR" RELATED BRAND_NAME [DrugBank] synonym: "L-Adrenaline" RELATED [KEGG_COMPOUND] synonym: "levoepinephrine" RELATED [IUPHAR] synonym: "Primatene" RELATED BRAND_NAME [DrugBank] -xref: Beilstein:2368277 {source="Beilstein"} xref: CAS:51-43-4 {source="KEGG COMPOUND"} xref: CAS:51-43-4 {source="ChemIDplus"} xref: CAS:51-43-4 {source="NIST Chemistry WebBook"} @@ -6230,18 +6224,18 @@ xref: PMID:29438107 {source="Europe PMC"} xref: Reaxys:2368277 {source="Reaxys"} xref: Wikipedia:Epinephrine is_a: CHEBI:194548 ! 4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol -relationship: has_role CHEBI:24621 ! hormone -relationship: has_role CHEBI:35522 ! beta-adrenergic agonist -relationship: has_role CHEBI:35523 ! bronchodilator agent -relationship: has_role CHEBI:35524 ! sympathomimetic agent -relationship: has_role CHEBI:35569 ! alpha-adrenergic agonist -relationship: has_role CHEBI:35620 ! vasodilator agent -relationship: has_role CHEBI:37886 ! adrenergic agonist -relationship: has_role CHEBI:50513 ! mydriatic agent -relationship: has_role CHEBI:50514 ! vasoconstrictor agent -relationship: has_role CHEBI:75771 ! mouse metabolite relationship: is_conjugate_base_of CHEBI:71406 ! (R)-adrenaline(1+) relationship: is_enantiomer_of CHEBI:40751 ! (S)-adrenaline +relationship: RO:0000087 CHEBI:24621 ! has role hormone +relationship: RO:0000087 CHEBI:35522 ! has role beta-adrenergic agonist +relationship: RO:0000087 CHEBI:35523 ! has role bronchodilator agent +relationship: RO:0000087 CHEBI:35524 ! has role sympathomimetic agent +relationship: RO:0000087 CHEBI:35569 ! has role alpha-adrenergic agonist +relationship: RO:0000087 CHEBI:35620 ! has role vasodilator agent +relationship: RO:0000087 CHEBI:37886 ! has role adrenergic agonist +relationship: RO:0000087 CHEBI:50513 ! has role mydriatic agent +relationship: RO:0000087 CHEBI:50514 ! has role vasoconstrictor agent +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite [Term] id: CHEBI:28938 @@ -6293,11 +6287,11 @@ is_a: BFO:0000004 ! independent continuant is_a: CHEBI:35106 ! nitrogen hydride is_a: CHEBI:50313 ! onium cation is_a: CHEBI:60242 ! monovalent inorganic cation -relationship: has_role CHEBI:23357 ! cofactor -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_acid_of CHEBI:16134 ! ammonia +relationship: RO:0000087 CHEBI:23357 ! has role cofactor +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:28963 @@ -6358,8 +6352,8 @@ xref: KEGG:C01353 xref: PDBeChem:CO3 is_a: CHEBI:35605 ! carbon oxoacid is_a: CHEBI:36961 ! chalcocarbonic acid -relationship: has_role CHEBI:75771 ! mouse metabolite relationship: is_conjugate_acid_of CHEBI:17544 ! hydrogencarbonate +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite [Term] id: CHEBI:29057 @@ -6427,8 +6421,38 @@ is_a: CHEBI:25414 ! monoatomic monocation is_a: CHEBI:33504 ! alkali metal cation is_a: CHEBI:37246 ! elemental sodium is_a: CHEBI:60242 ! monovalent inorganic cation -relationship: has_role CHEBI:23357 ! cofactor -relationship: has_role CHEBI:77746 ! human metabolite +relationship: RO:0000087 CHEBI:23357 ! has role cofactor +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite + +[Term] +id: CHEBI:29103 +name: potassium(1+) +namespace: chebi_ontology +alt_id: CHEBI:26219 +alt_id: CHEBI:49685 +alt_id: CHEBI:8345 +def: "A monoatomic monocation obtained from potassium." [] +subset: 3_STAR +synonym: "K(+)" RELATED [UniProt] +synonym: "K(+)" RELATED [IUPAC] +synonym: "K+" RELATED [KEGG_COMPOUND] +synonym: "potassium cation" EXACT IUPAC_NAME [IUPAC] +synonym: "POTASSIUM ION" RELATED [PDBeChem] +synonym: "potassium(1+)" EXACT IUPAC_NAME [IUPAC] +synonym: "potassium(1+) ion" EXACT IUPAC_NAME [IUPAC] +synonym: "potassium(I) cation" EXACT IUPAC_NAME [IUPAC] +xref: CAS:24203-36-9 {source="NIST Chemistry WebBook"} +xref: Gmelin:15203 {source="Gmelin"} +xref: KEGG:C00238 +xref: KEGG:D08403 +xref: PDBeChem:K +is_a: BFO:0000004 ! independent continuant +is_a: CHEBI:25414 ! monoatomic monocation +is_a: CHEBI:33504 ! alkali metal cation +is_a: CHEBI:37247 ! elemental potassium +is_a: CHEBI:60242 ! monovalent inorganic cation +relationship: RO:0000087 CHEBI:23357 ! has role cofactor +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:29108 @@ -6455,8 +6479,8 @@ is_a: BFO:0000004 ! independent continuant is_a: CHEBI:30412 ! monoatomic dication is_a: CHEBI:39123 ! calcium cation is_a: CHEBI:60240 ! divalent metal cation -relationship: has_role CHEBI:23357 ! cofactor -relationship: has_role CHEBI:77746 ! human metabolite +relationship: RO:0000087 CHEBI:23357 ! has role cofactor +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:29337 @@ -6533,14 +6557,13 @@ synonym: "(1s,4s)-1-(2-carboxylato-2-oxoethyl)-4-hydroxycyclohexa-2,5-diene-1-ca synonym: "cis-1-(2-carboxylato-2-oxoethyl)-4-hydroxycyclohexa-2,5-diene-1-carboxylate" EXACT IUPAC_NAME [IUPAC] synonym: "cis-prephenate" RELATED [ChEBI] synonym: "prephenate" RELATED [UniProt] -xref: Beilstein:3682733 {source="Beilstein"} xref: KEGG:C00254 xref: MetaCyc:PREPHENATE xref: Reaxys:3682733 {source="Reaxys"} is_a: CHEBI:57852 ! prephenate(2-) -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite relationship: is_conjugate_base_of CHEBI:16666 ! prephenic acid relationship: is_conjugate_base_of CHEBI:84387 ! (1s,4s)-prephenic acid +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite [Term] id: CHEBI:29976 @@ -6575,12 +6598,12 @@ xref: CAS:11070-68-1 {source="ChemIDplus"} xref: Gmelin:936654 {source="Gmelin"} xref: MetaCyc:GLT is_a: CHEBI:14321 ! glutamate(1-) -relationship: has_role CHEBI:24319 ! EC 6.3.1.2 (glutamate--ammonia ligase) inhibitor -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_acid_of CHEBI:29988 ! L-glutamate(2-) relationship: is_conjugate_base_of CHEBI:16015 ! L-glutamic acid relationship: is_enantiomer_of CHEBI:29986 ! D-glutamate(1-) +relationship: RO:0000087 CHEBI:24319 ! has role EC 6.3.1.2 (glutamate--ammonia ligase) inhibitor +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:29986 @@ -6612,13 +6635,12 @@ synonym: "2-aminopentanedioate" EXACT IUPAC_NAME [IUPAC] synonym: "glutamate" EXACT IUPAC_NAME [IUPAC] synonym: "glutamate(2-)" EXACT [JCBN] synonym: "glutamic acid dianion" RELATED [JCBN] -xref: Beilstein:4134100 {source="Beilstein"} xref: Gmelin:327903 {source="Gmelin"} xref: Reaxys:4134100 {source="Reaxys"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:28965 ! dicarboxylic acid dianion -relationship: has_role CHEBI:78675 ! fundamental metabolite relationship: is_conjugate_base_of CHEBI:14321 ! glutamate(1-) +relationship: RO:0000087 CHEBI:78675 ! has role fundamental metabolite [Term] id: CHEBI:29988 @@ -6669,7 +6691,6 @@ synonym: "CH3-COO(-)" RELATED [IUPAC] synonym: "Ethanoat" RELATED [ChEBI] synonym: "ethanoate" RELATED [ChEBI] synonym: "MeCO2 anion" RELATED [NIST_Chemistry_WebBook] -xref: Beilstein:1901470 {source="Beilstein"} xref: CAS:71-50-1 {source="ChemIDplus"} xref: CAS:71-50-1 {source="NIST Chemistry WebBook"} xref: DrugBank:DB03166 @@ -6685,9 +6706,9 @@ xref: UM-BBD_compID:c0050 {source="UM-BBD"} xref: Wikipedia:Acetate is_a: BFO:0000004 ! independent continuant is_a: CHEBI:35757 ! monocarboxylic acid anion -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_base_of CHEBI:15366 ! acetic acid +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:30212 @@ -6736,7 +6757,6 @@ synonym: "4-Aminobutylate" RELATED [KEGG_COMPOUND] synonym: "4-aminobutyrate" RELATED [ChEBI] synonym: "gamma-aminobutanoate" RELATED [ChEBI] synonym: "gamma-aminobutyrate anion" RELATED [ChEBI] -xref: Beilstein:3536873 {source="Beilstein"} xref: Gmelin:559138 {source="Gmelin"} xref: KEGG:C00334 xref: PMID:12509893 {source="Europe PMC"} @@ -6744,8 +6764,8 @@ xref: Reaxys:3536873 {source="Reaxys"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:71666 ! gamma-amino acid anion relationship: has_functional_parent CHEBI:17968 ! butyrate -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_base_of CHEBI:16865 ! gamma-aminobutyric acid +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:30616 @@ -6760,10 +6780,10 @@ xref: Beilstein:3581767 {source="Beilstein"} xref: Gmelin:342798 {source="Gmelin"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:61557 ! nucleoside 5'-triphoshate(4-) -relationship: has_role CHEBI:23357 ! cofactor -relationship: has_role CHEBI:77746 ! human metabolite -relationship: has_role CHEBI:78675 ! fundamental metabolite relationship: is_conjugate_base_of CHEBI:57299 ! ATP(3-) +relationship: RO:0000087 CHEBI:23357 ! has role cofactor +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite +relationship: RO:0000087 CHEBI:78675 ! has role fundamental metabolite [Term] id: CHEBI:30751 @@ -6788,7 +6808,6 @@ synonym: "HCOOH" RELATED [NIST_Chemistry_WebBook] synonym: "hydrogen carboxylic acid" RELATED [ChemIDplus] synonym: "Methanoic acid" RELATED [KEGG_COMPOUND] synonym: "methoic acid" RELATED [ChEBI] -xref: Beilstein:1209246 {source="Beilstein"} xref: BPDB:1749 xref: CAS:64-18-6 {source="NIST Chemistry WebBook"} xref: CAS:64-18-6 {source="ChemIDplus"} @@ -6828,12 +6847,12 @@ xref: PMID:7361809 {source="Europe PMC"} xref: Reaxys:1209246 {source="Reaxys"} xref: Wikipedia:Formic_acid is_a: CHEBI:25384 ! monocarboxylic acid -relationship: has_role CHEBI:25212 ! metabolite -relationship: has_role CHEBI:33282 ! antibacterial agent -relationship: has_role CHEBI:46787 ! solvent -relationship: has_role CHEBI:48356 ! protic solvent -relationship: has_role CHEBI:74783 ! astringent relationship: is_conjugate_acid_of CHEBI:15740 ! formate +relationship: RO:0000087 CHEBI:25212 ! has role metabolite +relationship: RO:0000087 CHEBI:33282 ! has role antibacterial agent +relationship: RO:0000087 CHEBI:46787 ! has role solvent +relationship: RO:0000087 CHEBI:48356 ! has role protic solvent +relationship: RO:0000087 CHEBI:74783 ! has role astringent [Term] id: CHEBI:30768 @@ -6878,8 +6897,8 @@ xref: PMID:16763906 {source="Europe PMC"} xref: PPDB:1341 is_a: CHEBI:26607 ! saturated fatty acid is_a: CHEBI:26666 ! short-chain fatty acid -relationship: has_role CHEBI:86327 ! antifungal drug relationship: is_conjugate_acid_of CHEBI:17272 ! propionate +relationship: RO:0000087 CHEBI:86327 ! has role antifungal drug [Term] id: CHEBI:30772 @@ -6913,7 +6932,6 @@ synonym: "n-butanoic acid" RELATED [NIST_Chemistry_WebBook] synonym: "n-butyric acid" RELATED [NIST_Chemistry_WebBook] synonym: "propanecarboxylic acid" RELATED [HMDB] synonym: "propylformic acid" RELATED [MetaCyc] -xref: Beilstein:906770 {source="Beilstein"} xref: CAS:107-92-6 {source="ChemIDplus"} xref: CAS:107-92-6 {source="NIST Chemistry WebBook"} xref: CAS:107-92-6 {source="KEGG COMPOUND"} @@ -6951,9 +6969,9 @@ xref: Reaxys:906770 {source="Reaxys"} xref: Wikipedia:Butyric_acid is_a: CHEBI:140601 ! fatty acid 4:0 is_a: CHEBI:39418 ! straight-chain saturated fatty acid -relationship: has_role CHEBI:131604 ! Mycoplasma genitalium metabolite -relationship: has_role CHEBI:84087 ! human urinary metabolite relationship: is_conjugate_acid_of CHEBI:17968 ! butyrate +relationship: RO:0000087 CHEBI:131604 ! has role Mycoplasma genitalium metabolite +relationship: RO:0000087 CHEBI:84087 ! has role human urinary metabolite [Term] id: CHEBI:30879 @@ -6996,18 +7014,17 @@ subset: 3_STAR synonym: "(2S)-2-amino-3-phenylpropanoate" RELATED [IUPAC] synonym: "L-phenylalaninate" EXACT IUPAC_NAME [IUPAC] synonym: "L-phenylalanine anion" RELATED [JCBN] -xref: Beilstein:4136718 {source="Beilstein"} xref: Gmelin:329084 {source="Gmelin"} xref: PMID:21956539 {source="Europe PMC"} xref: Reaxys:4136718 {source="Reaxys"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:32504 ! phenylalaninate is_a: CHEBI:59814 ! L-alpha-amino acid anion -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:76924 ! plant metabolite -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite relationship: is_conjugate_base_of CHEBI:17295 ! L-phenylalanine relationship: is_enantiomer_of CHEBI:32494 ! D-phenylalaninate +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:76924 ! has role plant metabolite +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite [Term] id: CHEBI:32487 @@ -7021,11 +7038,11 @@ synonym: "L-phenylalaninium" EXACT IUPAC_NAME [IUPAC] xref: PMID:21956539 {source="Europe PMC"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:32505 ! phenylalaninium -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:76924 ! plant metabolite -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite relationship: is_conjugate_acid_of CHEBI:17295 ! L-phenylalanine relationship: is_enantiomer_of CHEBI:32495 ! D-phenylalaninium +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:76924 ! has role plant metabolite +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite [Term] id: CHEBI:32494 @@ -7092,17 +7109,16 @@ synonym: "hydrogen L-tyrosinate" EXACT IUPAC_NAME [IUPAC] synonym: "L-tyrosinate(1-)" EXACT [JCBN] synonym: "L-tyrosine anion" RELATED [NIST_Chemistry_WebBook] synonym: "L-tyrosine monoanion" RELATED [JCBN] -xref: Beilstein:4784244 {source="Beilstein"} xref: Gmelin:329373 {source="Gmelin"} xref: Reaxys:4784244 {source="Reaxys"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:32784 ! tyrosinate(1-) is_a: CHEBI:59814 ! L-alpha-amino acid anion -relationship: has_role CHEBI:78675 ! fundamental metabolite relationship: is_conjugate_acid_of CHEBI:32761 ! L-tyrosinate(2-) relationship: is_conjugate_base_of CHEBI:17895 ! L-tyrosine relationship: is_conjugate_base_of CHEBI:58315 ! L-tyrosine zwitterion relationship: is_enantiomer_of CHEBI:32773 ! D-tyrosinate(1-) +relationship: RO:0000087 CHEBI:78675 ! has role fundamental metabolite [Term] id: CHEBI:32761 @@ -7114,14 +7130,13 @@ synonym: "(2S)-2-amino-3-(4-oxidophenyl)propanoate" RELATED [IUPAC] synonym: "L-tyrosinate" EXACT IUPAC_NAME [IUPAC] synonym: "L-tyrosinate(2-)" EXACT [JCBN] synonym: "L-tyrosine dianion" RELATED [JCBN] -xref: Beilstein:5339596 {source="Beilstein"} xref: Gmelin:364975 {source="Gmelin"} xref: Reaxys:5339596 {source="Reaxys"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:32785 ! tyrosinate(2-) -relationship: has_role CHEBI:78675 ! fundamental metabolite relationship: is_conjugate_base_of CHEBI:32760 ! L-tyrosinate(1-) relationship: is_enantiomer_of CHEBI:32774 ! D-tyrosinate(2-) +relationship: RO:0000087 CHEBI:78675 ! has role fundamental metabolite [Term] id: CHEBI:32762 @@ -7135,10 +7150,10 @@ synonym: "L-tyrosinium" EXACT IUPAC_NAME [IUPAC] xref: Gmelin:1150138 {source="Gmelin"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:32786 ! tyrosinium -relationship: has_role CHEBI:78675 ! fundamental metabolite relationship: is_conjugate_acid_of CHEBI:17895 ! L-tyrosine relationship: is_conjugate_acid_of CHEBI:58315 ! L-tyrosine zwitterion relationship: is_enantiomer_of CHEBI:32775 ! D-tyrosinium +relationship: RO:0000087 CHEBI:78675 ! has role fundamental metabolite [Term] id: CHEBI:32773 @@ -7153,10 +7168,10 @@ synonym: "hydrogen D-tyrosinate" EXACT IUPAC_NAME [IUPAC] xref: Gmelin:1484464 {source="Gmelin"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:32784 ! tyrosinate(1-) -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite relationship: is_conjugate_acid_of CHEBI:32774 ! D-tyrosinate(2-) relationship: is_conjugate_base_of CHEBI:28479 ! D-tyrosine relationship: is_enantiomer_of CHEBI:32760 ! L-tyrosinate(1-) +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite [Term] id: CHEBI:32774 @@ -7170,9 +7185,9 @@ synonym: "D-tyrosinate(2-)" EXACT [JCBN] synonym: "D-tyrosine dianion" RELATED [JCBN] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:32785 ! tyrosinate(2-) -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite relationship: is_conjugate_base_of CHEBI:32773 ! D-tyrosinate(1-) relationship: is_enantiomer_of CHEBI:32761 ! L-tyrosinate(2-) +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite [Term] id: CHEBI:32775 @@ -7186,9 +7201,9 @@ synonym: "D-tyrosinium" EXACT IUPAC_NAME [IUPAC] xref: Gmelin:364976 {source="Gmelin"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:32786 ! tyrosinium -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite relationship: is_conjugate_acid_of CHEBI:28479 ! D-tyrosine relationship: is_enantiomer_of CHEBI:32762 ! L-tyrosinium +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite [Term] id: CHEBI:32784 @@ -7299,8 +7314,8 @@ xref: Wikipedia:Calcitonin is_a: CHEBI:15841 ! polypeptide is_a: CHEBI:24533 ! heterodetic cyclic peptide is_a: CHEBI:25905 ! peptide hormone -relationship: has_role CHEBI:25212 ! metabolite -relationship: has_role CHEBI:50646 ! bone density conservation agent +relationship: RO:0000087 CHEBI:25212 ! has role metabolite +relationship: RO:0000087 CHEBI:50646 ! has role bone density conservation agent [Term] id: CHEBI:3311 @@ -7335,10 +7350,10 @@ is_a: CHEBI:190295 ! inorganic calcium salt is_a: CHEBI:35156 ! calcium salt is_a: CHEBI:46721 ! carbonate salt is_a: CHEBI:64708 ! one-carbon compound -relationship: has_role CHEBI:33287 ! fertilizer -relationship: has_role CHEBI:65265 ! antacid -relationship: has_role CHEBI:77182 ! food colouring -relationship: has_role CHEBI:77960 ! food firming agent +relationship: RO:0000087 CHEBI:33287 ! has role fertilizer +relationship: RO:0000087 CHEBI:65265 ! has role antacid +relationship: RO:0000087 CHEBI:77182 ! has role food colouring +relationship: RO:0000087 CHEBI:77960 ! has role food firming agent [Term] id: CHEBI:33232 @@ -7811,7 +7826,7 @@ subset: 3_STAR synonym: "pnictogen oxoacids" RELATED [ChEBI] is_a: CHEBI:24833 ! oxoacid is_a: CHEBI:33302 ! pnictogen molecular entity -relationship: has_role CHEBI:138103 ! inorganic acid +relationship: RO:0000087 CHEBI:138103 ! has role inorganic acid [Term] id: CHEBI:33424 @@ -7911,7 +7926,7 @@ subset: 3_STAR synonym: "chalcogen oxoacid" EXACT [ChEBI] synonym: "chalcogen oxoacids" RELATED [ChEBI] is_a: CHEBI:24833 ! oxoacid -relationship: has_role CHEBI:138103 ! inorganic acid +relationship: RO:0000087 CHEBI:138103 ! has role inorganic acid [Term] id: CHEBI:33485 @@ -7985,8 +8000,8 @@ name: alpha-amino-acid anion namespace: chebi_ontology def: "An amino-acid anion obtained by deprotonation of any alpha-amino acid." [] subset: 3_STAR +synonym: "alpha-amino acid anion" RELATED [ChEBI] synonym: "alpha-amino acid anions" RELATED [ChEBI] -synonym: "alpha-amino-acid anion" EXACT [ChEBI] synonym: "alpha-amino-acid anions" RELATED [ChEBI] is_a: CHEBI:37022 ! amino-acid anion relationship: is_conjugate_base_of CHEBI:33704 ! alpha-amino acid @@ -8078,8 +8093,8 @@ xref: CAS:138-65-8 {source="ChemIDplus"} xref: Gmelin:863925 {source="Gmelin"} xref: LINCS:LSM-5181 is_a: CHEBI:33567 ! catecholamine -relationship: has_role CHEBI:76967 ! human xenobiotic metabolite relationship: is_conjugate_base_of CHEBI:166902 ! noradrenaline(1+) +relationship: RO:0000087 CHEBI:76967 ! has role human xenobiotic metabolite [Term] id: CHEBI:33570 @@ -8097,7 +8112,6 @@ namespace: chebi_ontology def: "The S-enantiomer of noradrenaline." [] subset: 3_STAR synonym: "4-[(1S)-2-amino-1-hydroxyethyl]benzene-1,2-diol" EXACT IUPAC_NAME [IUPAC] -xref: Beilstein:2937999 {source="Beilstein"} xref: LINCS:LSM-37072 xref: Reaxys:2937999 {source="Reaxys"} is_a: CHEBI:33569 ! noradrenaline @@ -8472,7 +8486,7 @@ name: amino-acid cation namespace: chebi_ontology subset: 3_STAR synonym: "amino acid cation" RELATED [ChEBI] -synonym: "amino-acid cation" EXACT [ChEBI] +synonym: "amino acid cations" RELATED [ChEBI] synonym: "amino-acid cations" RELATED [ChEBI] is_a: CHEBI:25697 ! organic cation is_a: CHEBI:33702 ! polyatomic cation @@ -8499,7 +8513,7 @@ xref: KEGG:C05167 is_a: CHEBI:33709 ! amino acid relationship: is_conjugate_acid_of CHEBI:33558 ! alpha-amino-acid anion relationship: is_conjugate_base_of CHEBI:33719 ! alpha-amino-acid cation -relationship: is_tautomer_of CHEBI:78608 ! alpha-amino acid zwitterion +relationship: is_tautomer_of CHEBI:78608 ! alpha-amino-acid zwitterion [Term] id: CHEBI:33707 @@ -8519,6 +8533,7 @@ namespace: chebi_ontology def: "When two or more amino acids combine to form a peptide, the elements of water are removed, and what remains of each amino acid is called an amino-acid residue." [] subset: 3_STAR synonym: "amino acid residue" RELATED [ChEBI] +synonym: "amino acid residues" RELATED [ChEBI] synonym: "amino-acid residue" EXACT IUPAC_NAME [IUPAC] synonym: "amino-acid residues" RELATED [JCBN] is_a: CHEBI:33247 ! organic group @@ -8560,8 +8575,8 @@ id: CHEBI:33719 name: alpha-amino-acid cation namespace: chebi_ontology subset: 3_STAR +synonym: "alpha-amino acid cation" RELATED [ChEBI] synonym: "alpha-amino acid cations" RELATED [ChEBI] -synonym: "alpha-amino-acid cation" EXACT [ChEBI] synonym: "alpha-amino-acid cations" RELATED [ChEBI] is_a: CHEBI:33703 ! amino-acid cation relationship: is_conjugate_acid_of CHEBI:33704 ! alpha-amino acid @@ -8847,8 +8862,8 @@ synonym: "serotonin" RELATED [UniProt] synonym: "serotonin cation" RELATED [ChEBI] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:35274 ! ammonium ion derivative -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_acid_of CHEBI:28790 ! serotonin +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:35106 @@ -9007,11 +9022,13 @@ is_a: CHEBI:51086 ! chemical role [Term] id: CHEBI:35238 -name: amino acid zwitterion +name: amino-acid zwitterion namespace: chebi_ontology def: "The zwitterionic form of an amino acid having a negatively charged carboxyl group and a positively charged amino group." [] subset: 3_STAR -synonym: "amino acid zwitterion" EXACT [ChEBI] +synonym: "amino acid zwitterion" RELATED [ChEBI] +synonym: "amino acid zwitterions" RELATED [ChEBI] +synonym: "amino-acid zwitterions" RELATED [ChEBI] is_a: CHEBI:27369 ! zwitterion [Term] @@ -9454,7 +9471,7 @@ xref: PMID:24088627 {source="Europe PMC"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:26401 ! purines is_a: CHEBI:35570 ! mancude organic heterobicyclic parent -relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: RO:0000087 CHEBI:78675 ! has role fundamental metabolite [Term] id: CHEBI:35586 @@ -9672,8 +9689,8 @@ synonym: "phosphate ions" RELATED [ChEBI] synonym: "Pi" RELATED [ChEBI] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:33461 ! phosphorus oxoanion -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_base_of CHEBI:26078 ! phosphoric acid +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:35786 @@ -10081,7 +10098,6 @@ subset: 3_STAR synonym: "2,6,10-trimethyldodecane" EXACT IUPAC_NAME [IUPAC] synonym: "Farnesan" RELATED [NIST_Chemistry_WebBook] synonym: "farnesane" EXACT [NIST_Chemistry_WebBook] -xref: Beilstein:1719672 {source="Beilstein"} xref: CAS:3891-98-3 {source="NIST Chemistry WebBook"} xref: CAS:3891-98-3 {source="ChemIDplus"} xref: LIPID_MAPS_instance:LMPR0103010000 {source="LIPID MAPS"} @@ -10092,7 +10108,7 @@ xref: Reaxys:1719672 {source="Reaxys"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:18310 ! alkane is_a: CHEBI:35189 ! sesquiterpene -relationship: has_role CHEBI:76924 ! plant metabolite +relationship: RO:0000087 CHEBI:76924 ! has role plant metabolite [Term] id: CHEBI:36757 @@ -10246,8 +10262,8 @@ id: CHEBI:37022 name: amino-acid anion namespace: chebi_ontology subset: 3_STAR +synonym: "amino acid anion" RELATED [ChEBI] synonym: "amino acid anions" RELATED [ChEBI] -synonym: "amino-acid anion" EXACT [ChEBI] synonym: "amino-acid anions" RELATED [ChEBI] is_a: CHEBI:29067 ! carboxylic acid anion is_a: CHEBI:35352 ! organonitrogen compound @@ -10348,6 +10364,13 @@ namespace: chebi_ontology subset: 3_STAR is_a: CHEBI:26712 ! sodium molecular entity +[Term] +id: CHEBI:37247 +name: elemental potassium +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:26217 ! potassium molecular entity + [Term] id: CHEBI:37395 name: mucopolysaccharide @@ -10509,10 +10532,10 @@ xref: Reaxys:3150815 {source="Reaxys"} is_a: CHEBI:27177 ! L-tyrosine derivative is_a: CHEBI:74956 ! O(4)-phosphotyrosine is_a: CHEBI:83822 ! non-proteinogenic L-alpha-amino acid -relationship: has_role CHEBI:60816 ! immunogen -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite relationship: is_conjugate_acid_of CHEBI:62338 ! O(4)-phosphonato-L-tyrosine(2-) relationship: is_enantiomer_of CHEBI:74959 ! O(4)-phospho-D-tyrosine +relationship: RO:0000087 CHEBI:60816 ! has role immunogen +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite [Term] id: CHEBI:37826 @@ -10760,7 +10783,7 @@ xref: KEGG:D00146 is_a: CHEBI:15841 ! polypeptide is_a: CHEBI:25905 ! peptide hormone is_a: CHEBI:33694 ! biomacromolecule -relationship: has_role CHEBI:33295 ! diagnostic agent +relationship: RO:0000087 CHEBI:33295 ! has role diagnostic agent [Term] id: CHEBI:38958 @@ -11010,7 +11033,6 @@ synonym: "Glucose" RELATED [KEGG_COMPOUND] synonym: "glucose" RELATED [ChEBI] synonym: "Grape sugar" RELATED [KEGG_COMPOUND] synonym: "WURCS=2.0/1,1,0/[a2122h-1x_1-5]/1/" RELATED [GlyTouCan] -xref: Beilstein:1281604 {source="Beilstein"} xref: CAS:2280-44-6 {source="ChemIDplus"} xref: GlyGen:G15021LG xref: GlyTouCan:G15021LG @@ -11037,10 +11059,10 @@ xref: Reaxys:1281604 {source="Reaxys"} xref: Wikipedia:Glucose is_a: CHEBI:17634 ! D-glucose is_a: CHEBI:37661 ! glucopyranose -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite -relationship: has_role CHEBI:77746 ! human metabolite +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:4194 @@ -11117,10 +11139,10 @@ xref: PDBeChem:PI xref: PDBeChem:PO4 is_a: CHEBI:35780 ! phosphate ion is_a: CHEBI:79388 ! divalent inorganic anion -relationship: has_role CHEBI:23357 ! cofactor -relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite relationship: is_conjugate_acid_of CHEBI:18367 ! phosphate(3-) relationship: is_conjugate_base_of CHEBI:39745 ! dihydrogenphosphate +relationship: RO:0000087 CHEBI:23357 ! has role cofactor +relationship: RO:0000087 CHEBI:75772 ! has role Saccharomyces cerevisiae metabolite [Term] id: CHEBI:456216 @@ -11136,10 +11158,10 @@ xref: Beilstein:3783669 {source="Beilstein"} xref: Gmelin:341336 {source="Gmelin"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:57930 ! nucleoside 5'-diphosphate(3-) -relationship: has_role CHEBI:77746 ! human metabolite -relationship: has_role CHEBI:78675 ! fundamental metabolite relationship: is_conjugate_base_of CHEBI:16761 ! ADP relationship: is_conjugate_base_of CHEBI:87518 ! ADP(2-) +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite +relationship: RO:0000087 CHEBI:78675 ! has role fundamental metabolite [Term] id: CHEBI:45696 @@ -11298,7 +11320,7 @@ synonym: "rel-(3R,4S,5R)-5-(hydroxymethyl)tetrahydrofuran-2,3,4-triol" RELATED [ synonym: "ribofuranose" EXACT IUPAC_NAME [IUPAC] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:33942 ! ribose -relationship: has_role CHEBI:84735 ! algal metabolite +relationship: RO:0000087 CHEBI:84735 ! has role algal metabolite [Term] id: CHEBI:47013 @@ -11342,16 +11364,6 @@ subset: 3_STAR synonym: "dihydroxytetrahydrofurans" RELATED [ChEBI] is_a: CHEBI:47017 ! tetrahydrofuranol -[Term] -id: CHEBI:4705 -name: double-stranded DNA -namespace: chebi_ontology -subset: 3_STAR -synonym: "Double-stranded DNA" EXACT [KEGG_COMPOUND] -synonym: "dsDNA" RELATED [UniProt] -xref: KEGG:C00434 -is_a: CHEBI:16991 ! deoxyribonucleic acid - [Term] id: CHEBI:47622 name: acetate ester @@ -11609,7 +11621,7 @@ is_a: BFO:0000004 ! independent continuant is_a: CHEBI:24835 ! inorganic molecular entity is_a: CHEBI:25585 ! nonmetal atom is_a: CHEBI:33559 ! s-block element atom -relationship: has_role CHEBI:33937 ! macronutrient +relationship: RO:0000087 CHEBI:33937 ! has role macronutrient [Term] id: CHEBI:50047 @@ -11621,7 +11633,7 @@ synonym: "organic amino compounds" RELATED [ChEBI] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:35352 ! organonitrogen compound relationship: has_parent_hydride CHEBI:16134 ! ammonia -relationship: has_role CHEBI:39142 ! Bronsted base +relationship: RO:0000087 CHEBI:39142 ! has role Bronsted base [Term] id: CHEBI:50112 @@ -12165,24 +12177,6 @@ def: "A phosphate mineral with the formula Ca5(PO4)3(OH)." [] subset: 3_STAR is_a: CHEBI:52254 ! apatite -[Term] -id: CHEBI:52395 -name: oxyketone -namespace: chebi_ontology -def: "A compound with the general formula R2C=O (R=/=H) where one or more of the R groups contains an oxy (-O-) group." [] -subset: 3_STAR -synonym: "oxyketones" RELATED [ChEBI] -is_a: CHEBI:17087 ! ketone - -[Term] -id: CHEBI:52396 -name: alpha-oxyketone -namespace: chebi_ontology -def: "An oxyketone with the general formula R2C(=O) (R=/=H) where one or more of the R groups contains an oxy (-O-) group and the oxy and carbonyl groups are bonded to the same carbon atom." [] -subset: 3_STAR -synonym: "alpha-oxyketones" RELATED [ChEBI] -is_a: CHEBI:52395 ! oxyketone - [Term] id: CHEBI:5254 name: galactolipid @@ -12301,12 +12295,12 @@ subset: 3_STAR xref: Beilstein:9535056 {source="Beilstein"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:59724 ! ribonucleoside triphosphate oxoanion -relationship: has_role CHEBI:23357 ! cofactor -relationship: has_role CHEBI:77746 ! human metabolite -relationship: has_role CHEBI:78675 ! fundamental metabolite relationship: is_conjugate_acid_of CHEBI:30616 ! ATP(4-) relationship: is_conjugate_base_of CHEBI:15422 ! ATP relationship: is_conjugate_base_of CHEBI:237958 ! ({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate +relationship: RO:0000087 CHEBI:23357 ! has role cofactor +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite +relationship: RO:0000087 CHEBI:78675 ! has role fundamental metabolite [Term] id: CHEBI:57652 @@ -12331,9 +12325,9 @@ synonym: "prephenate dianion" RELATED [ChEBI] xref: Beilstein:5288208 {source="Beilstein"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:28965 ! dicarboxylic acid dianion -relationship: has_role CHEBI:76924 ! plant metabolite -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite relationship: is_conjugate_base_of CHEBI:16666 ! prephenic acid +relationship: RO:0000087 CHEBI:76924 ! has role plant metabolite +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite [Term] id: CHEBI:57867 @@ -12359,10 +12353,10 @@ synonym: "tryptaminium(1+)" RELATED [ChEBI] xref: Gmelin:533978 {source="Gmelin"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:65296 ! primary ammonium ion -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:76924 ! plant metabolite -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_acid_of CHEBI:16765 ! tryptamine +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:76924 ! has role plant metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:57930 @@ -12392,8 +12386,8 @@ xref: Beilstein:4083310 {source="Beilstein"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:28965 ! dicarboxylic acid dianion is_a: CHEBI:59252 ! linear tetrapyrrole anion -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_base_of CHEBI:16990 ! bilirubin IXalpha +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:57981 @@ -12421,7 +12415,7 @@ synonym: "L-phenylalanine" RELATED [UniProt] synonym: "phenylalanine" RELATED [ChEBI] xref: MetaCyc:PHE xref: PMID:21956539 {source="Europe PMC"} -is_a: CHEBI:35238 ! amino acid zwitterion +is_a: CHEBI:35238 ! amino-acid zwitterion relationship: is_enantiomer_of CHEBI:57981 ! D-phenylalanine zwitterion relationship: is_tautomer_of CHEBI:17295 ! L-phenylalanine @@ -12449,7 +12443,7 @@ subset: 3_STAR synonym: "(2S)-2-ammonio-3-(4-hydroxyphenyl)propanoate" RELATED [IUPAC] synonym: "(2S)-2-azaniumyl-3-(4-hydroxyphenyl)propanoate" EXACT IUPAC_NAME [IUPAC] synonym: "L-tyrosine" RELATED [UniProt] -is_a: CHEBI:35238 ! amino acid zwitterion +is_a: CHEBI:35238 ! amino-acid zwitterion relationship: is_conjugate_acid_of CHEBI:32760 ! L-tyrosinate(1-) relationship: is_conjugate_base_of CHEBI:32762 ! L-tyrosinium relationship: is_tautomer_of CHEBI:17895 ! L-tyrosine @@ -12465,9 +12459,9 @@ synonym: "histamine" RELATED [UniProt] synonym: "histaminium cation" RELATED [ChEBI] is_a: BFO:0000004 ! independent continuant is_a: CHEBI:35274 ! ammonium ion derivative -relationship: has_role CHEBI:75771 ! mouse metabolite -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_acid_of CHEBI:18295 ! histamine +relationship: RO:0000087 CHEBI:75771 ! has role mouse metabolite +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:58570 @@ -12650,7 +12644,7 @@ def: "Zwitterionic form of an L-alpha-amino acid having an anionic carboxy group subset: 3_STAR synonym: "an L-alpha-amino acid" RELATED [UniProt] synonym: "L-alpha-amino acid zwitterions" RELATED [ChEBI] -is_a: CHEBI:78608 ! alpha-amino acid zwitterion +is_a: CHEBI:78608 ! alpha-amino-acid zwitterion relationship: is_tautomer_of CHEBI:15705 ! L-alpha-amino acid [Term] @@ -12661,7 +12655,7 @@ def: "Zwitterionic form of a D-alpha-amino acid having an anionic carboxy group subset: 3_STAR synonym: "a D-alpha-amino acid" RELATED [UniProt] synonym: "D-alpha-amino acid zwitterions" RELATED [ChEBI] -is_a: CHEBI:35238 ! amino acid zwitterion +is_a: CHEBI:35238 ! amino-acid zwitterion relationship: is_tautomer_of CHEBI:16733 ! D-alpha-amino acid [Term] @@ -12674,7 +12668,7 @@ synonym: "4-aminobutanoate" RELATED [UniProt] synonym: "4-ammoniobutanoate" RELATED [ChEBI] synonym: "4-azaniumylbutanoate" EXACT IUPAC_NAME [IUPAC] xref: Gmelin:1041559 {source="Gmelin"} -is_a: CHEBI:35238 ! amino acid zwitterion +is_a: CHEBI:35238 ! amino-acid zwitterion relationship: is_tautomer_of CHEBI:16865 ! gamma-aminobutyric acid [Term] @@ -12690,8 +12684,8 @@ synonym: "dopaminium cation" RELATED [ChEBI] xref: Gmelin:328863 {source="Gmelin"} is_a: BFO:0000004 ! independent continuant is_a: CHEBI:35274 ! ammonium ion derivative -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_acid_of CHEBI:18243 ! dopamine +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:59999 @@ -12937,7 +12931,7 @@ def: "Zwitterionic form of a polar amino acid having an anionic carboxy group an subset: 2_STAR synonym: "a polar amino acid" RELATED [UniProt] xref: MetaCyc:Polar-amino-acids {source="SUBMITTER"} -is_a: CHEBI:35238 ! amino acid zwitterion +is_a: CHEBI:35238 ! amino-acid zwitterion relationship: is_tautomer_of CHEBI:26167 ! polar amino acid [Term] @@ -13355,7 +13349,6 @@ synonym: "amino-acid anion residue" RELATED [ChEBI] synonym: "amino-acid anion residues" RELATED [ChEBI] synonym: "anionic amino acid residue" RELATED [ChEBI] synonym: "anionic amino acid residues" RELATED [ChEBI] -synonym: "anionic amino-acid residues" RELATED [ChEBI] is_a: CHEBI:64775 ! organic anionic group relationship: is_conjugate_base_of CHEBI:33708 ! amino-acid residue @@ -13391,7 +13384,7 @@ is_a: BFO:0000004 ! independent continuant is_a: CHEBI:33837 ! conjugated protein is_a: CHEBI:39024 ! clathrate compound relationship: has_part CHEBI:39015 ! apolipoprotein -relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: RO:0000087 CHEBI:76971 ! has role Escherichia coli metabolite [Term] id: CHEBI:65212 @@ -13506,8 +13499,8 @@ xref: MetaCyc:L-EPINEPHRINE is_a: BFO:0000004 ! independent continuant is_a: CHEBI:25697 ! organic cation is_a: CHEBI:35274 ! ammonium ion derivative -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_acid_of CHEBI:28918 ! (R)-adrenaline +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:71666 @@ -13533,8 +13526,8 @@ synonym: "(R)-noradrenalinium(1+)" RELATED [ChEBI] xref: PDBeChem:E5E is_a: BFO:0000004 ! independent continuant is_a: CHEBI:166902 ! noradrenaline(1+) -relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_acid_of CHEBI:18357 ! (R)-noradrenaline +relationship: RO:0000087 CHEBI:77746 ! has role human metabolite [Term] id: CHEBI:72695 @@ -13809,7 +13802,7 @@ subset: 3_STAR synonym: "an aromatic amino-acid" RELATED [UniProt] synonym: "aromatic amino-acid zwitterions" RELATED [ChEBI] xref: MetaCyc:Aromatic-Amino-Acids {source="SUBMITTER"} -is_a: CHEBI:35238 ! amino acid zwitterion +is_a: CHEBI:35238 ! amino-acid zwitterion relationship: is_tautomer_of CHEBI:33856 ! aromatic amino acid [Term] @@ -14180,14 +14173,17 @@ is_a: CHEBI:33232 ! application [Term] id: CHEBI:78608 -name: alpha-amino acid zwitterion +name: alpha-amino-acid zwitterion namespace: chebi_ontology alt_id: CHEBI:83409 -def: "An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of any alpha-amino acid; major species at pH 7.3." [] +def: "An amino acid-zwitterion obtained by transfer of a proton from the carboxy to the amino group of any alpha-amino acid; major species at pH 7.3." [] subset: 3_STAR +synonym: "alpha-amino acid zwitterion" RELATED [ChEBI] +synonym: "alpha-amino acid zwitterions" RELATED [ChEBI] +synonym: "alpha-amino-acid zwitterions" RELATED [ChEBI] synonym: "an alpha-amino acid" RELATED [UniProt] xref: MetaCyc:Alpha-Amino-Acids {source="SUBMITTER"} -is_a: CHEBI:35238 ! amino acid zwitterion +is_a: CHEBI:35238 ! amino-acid zwitterion relationship: is_tautomer_of CHEBI:33704 ! alpha-amino acid [Term] @@ -14333,7 +14329,7 @@ xref: Reaxys:1160988 {source="Reaxys"} xref: Wikipedia:Porphyrin is_a: CHEBI:26214 ! porphyrins is_a: CHEBI:35794 ! tetrapyrrole fundamental parent -relationship: has_role CHEBI:25212 ! metabolite +relationship: RO:0000087 CHEBI:25212 ! has role metabolite [Term] id: CHEBI:83811 @@ -14348,7 +14344,7 @@ synonym: "canonical amino-acid derivatives" RELATED [ChEBI] synonym: "proteinogenic amino acid derivatives" RELATED [ChEBI] synonym: "proteinogenic amino-acid derivative" RELATED [ChEBI] synonym: "proteinogenic amino-acid derivatives" RELATED [ChEBI] -is_a: CHEBI:83821 ! amino acid derivative +is_a: CHEBI:83821 ! amino-acid derivative relationship: has_functional_parent CHEBI:83813 ! proteinogenic amino acid [Term] @@ -14360,7 +14356,7 @@ subset: 3_STAR synonym: "non-canonical amino acid derivative" RELATED [ChEBI] synonym: "non-canonical amino-acid derivatives" RELATED [ChEBI] synonym: "non-proteinogenic amino-acid derivatives" RELATED [ChEBI] -is_a: CHEBI:83821 ! amino acid derivative +is_a: CHEBI:83821 ! amino-acid derivative [Term] id: CHEBI:83813 @@ -14396,12 +14392,14 @@ is_a: CHEBI:33709 ! amino acid [Term] id: CHEBI:83821 -name: amino acid derivative +name: amino-acid derivative namespace: chebi_ontology alt_id: CHEBI:25359 def: "Any derivative of an amino acid resulting from reaction at an amino group, carboxy group, side-chain functional group, or from the replacement of any hydrogen by a heteroatom. The definition normally excludes peptides containing amino acid residues." [] subset: 3_STAR +synonym: "amino acid derivative" RELATED [ChEBI] synonym: "amino acid derivatives" RELATED [ChEBI] +synonym: "amino-acid derivatives" RELATED [ChEBI] synonym: "modified amino acids" RELATED [ChEBI] is_a: CHEBI:35352 ! organonitrogen compound @@ -14613,9 +14611,9 @@ is_a: UBERON:0000061 ! anatomical structure disjoint_from: GO:0031012 ! extracellular matrix disjoint_from: GO:0032991 ! protein-containing complex disjoint_from: GO:0043226 ! organelle -relationship: has_part GO:0005634 {gci_filler="PATO:0001407", gci_relation="has_characteristic"} ! nucleus -relationship: has_part GO:0005634 {gci_filler="PATO:0001908", gci_relation="has_characteristic"} ! nucleus -relationship: only_in_taxon NCBITaxon:131567 ! cellular organisms +relationship: has_part GO:0005634 {gci_filler="PATO:0001407", gci_relation="RO:0000053"} ! nucleus +relationship: has_part GO:0005634 {gci_filler="PATO:0001908", gci_relation="RO:0000053"} ! nucleus +relationship: in_taxon NCBITaxon:131567 ! cellular organisms [Term] id: CL:0000005 @@ -14710,17 +14708,18 @@ xref: EMAPA:31486 xref: FMA:72294 xref: WBbt:0006800 is_a: CL:0000015 ! male germ cell +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0000413 ! haploid cell intersection_of: CL:0000015 ! male germ cell intersection_of: capable_of GO:0001675 ! acrosome assembly intersection_of: capable_of GO:0007288 ! sperm axoneme assembly intersection_of: capable_of GO:0007289 ! spermatid nucleus differentiation -intersection_of: has_characteristic PATO:0001375 ! haploid +intersection_of: RO:0000053 PATO:0001375 ! has characteristic haploid relationship: capable_of GO:0001675 ! acrosome assembly relationship: capable_of GO:0007288 ! sperm axoneme assembly relationship: capable_of GO:0007289 ! spermatid nucleus differentiation relationship: develops_from CL:0000657 ! secondary spermatocyte -relationship: has_characteristic PATO:0001375 ! haploid +relationship: RO:0000053 PATO:0001375 ! has characteristic haploid [Term] id: CL:0000019 @@ -14735,6 +14734,7 @@ xref: BTO:0002046 xref: CALOHA:TS-0949 xref: FMA:67338 xref: WBbt:0006798 +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0000408 {is_inferred="true"} ! male gamete relationship: develops_from CL:0000018 ! spermatid @@ -14749,10 +14749,10 @@ xref: EMAPA:31482 xref: FMA:72291 is_a: CL:0000015 ! male germ cell intersection_of: CL:0000015 ! male germ cell -intersection_of: has_characteristic PATO:0001394 ! diploid -intersection_of: has_characteristic PATO:0001501 ! immature -relationship: has_characteristic PATO:0001394 ! diploid -relationship: has_characteristic PATO:0001501 ! immature +intersection_of: RO:0000053 PATO:0001394 ! has characteristic diploid +intersection_of: RO:0000053 PATO:0001501 ! has characteristic immature +relationship: RO:0000053 PATO:0001394 ! has characteristic diploid +relationship: RO:0000053 PATO:0001501 ! has characteristic immature [Term] id: CL:0000021 @@ -14762,6 +14762,7 @@ subset: cellxgene_subset xref: MA:0000388 xref: ncithesaurus:Egg xref: VHOG:0001530 +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0000586 {is_inferred="true"} ! germ cell intersection_of: CL:0000586 ! germ cell intersection_of: capable_of GO:0048477 ! oogenesis @@ -14789,8 +14790,7 @@ xref: FMA:18644 xref: MESH:D009865 xref: WBbt:0006797 is_a: CL:0000021 {is_inferred="true"} ! female germ cell -is_a: CL:0000255 ! eukaryotic cell -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: in_taxon NCBITaxon:33208 ! Metazoa relationship: participates_in GO:0007143 ! female meiotic nuclear division [Term] @@ -14849,6 +14849,7 @@ id: CL:0000030 name: glioblast subset: cellxgene_subset is_a: CL:0000055 ! non-terminally differentiated cell +is_a: CL:0000255 ! eukaryotic cell is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from CL:0000133 ! neurectodermal cell @@ -14862,7 +14863,7 @@ xref: BTO:0000930 xref: FMA:70563 is_a: CL:0000055 ! non-terminally differentiated cell is_a: CL:0000255 ! eukaryotic cell -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata +relationship: in_taxon NCBITaxon:7742 ! Vertebrata [Term] id: CL:0000034 @@ -14875,6 +14876,7 @@ subset: human_reference_atlas synonym: "animal stem cell" EXACT [] xref: CALOHA:TS-2086 xref: FMA:63368 +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0011115 ! precursor cell intersection_of: CL:0000000 ! cell intersection_of: capable_of GO:0017145 ! stem cell division @@ -14892,9 +14894,9 @@ xref: FMA:70569 is_a: CL:0000723 ! somatic stem cell intersection_of: CL:0000000 ! cell intersection_of: capable_of GO:0017145 ! stem cell division -intersection_of: has_characteristic PATO:0001400 ! unipotent +intersection_of: RO:0000053 PATO:0001400 ! has characteristic unipotent relationship: capable_of GO:0017145 ! stem cell division -relationship: has_characteristic PATO:0001400 ! unipotent +relationship: RO:0000053 PATO:0001400 ! has characteristic unipotent [Term] id: CL:0000036 @@ -14997,19 +14999,20 @@ xref: CALOHA:TS-1195 xref: FMA:83553 is_a: CL:0000763 ! myeloid cell is_a: CL:0002194 {is_inferred="true"} ! monopoietic cell +is_a: PR:000050567 ! obsolete protein-containing material entity is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: CL:0002194 ! monopoietic cell intersection_of: capable_of GO:0030224 ! monocyte differentiation intersection_of: has_part CL:0017503 ! basophilic cytoplasm intersection_of: has_part GO:0000791 ! euchromatin intersection_of: has_part GO:0005730 ! nucleolus -intersection_of: has_plasma_membrane_part PR:000001012 ! integrin alpha-M +intersection_of: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M relationship: capable_of GO:0030224 ! monocyte differentiation relationship: develops_from CL:0002009 ! macrophage dendritic cell progenitor relationship: has_part CL:0017503 ! basophilic cytoplasm relationship: has_part GO:0000791 ! euchromatin relationship: has_part GO:0005730 ! nucleolus -relationship: has_plasma_membrane_part PR:000001012 ! integrin alpha-M +relationship: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M [Term] id: CL:0000048 @@ -15023,9 +15026,9 @@ xref: FMA:84789 is_a: CL:0000034 ! stem cell intersection_of: CL:0000000 ! cell intersection_of: capable_of GO:0017145 ! stem cell division -intersection_of: has_characteristic PATO:0001402 ! multipotent +intersection_of: RO:0000053 PATO:0001402 ! has characteristic multipotent relationship: capable_of GO:0017145 ! stem cell division -relationship: has_characteristic PATO:0001402 ! multipotent +relationship: RO:0000053 PATO:0001402 ! has characteristic multipotent [Term] id: CL:0000049 @@ -15216,7 +15219,8 @@ def: "A cell that has a filiform extrusion of the cell surface." [GOC:tfm] subset: cellxgene_subset xref: VHOG:0001532 xref: XAO:0000031 -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000000 ! cell intersection_of: has_part GO:0005929 ! cilium relationship: has_part GO:0005929 ! cilium @@ -15224,14 +15228,20 @@ relationship: has_part GO:0005929 ! cilium [Term] id: CL:0000065 name: ependymal cell -def: "A neurectoderm derived cell that lines the neural lumen." [GOC:tfm, JB:jb, PMID:9550134] +def: "A neuroepithelial glial cell, derived from a radial glial cell originating from the neuroectoderm, lines the ventricles of the brain and the central canal of the spinal cord. This cell is characterized by the presence of cilia on its apical surface, which can be motile or non-motile." [doi:/10.3389/fncel.2021.703951, GOC:tfm, https://www.britannica.com/science/ependymal-cell, JB:jb, PMID:34335193, PMID:37008045, PMID:9550134] subset: cellxgene_subset subset: human_reference_atlas -synonym: "ependymocyte" EXACT [] +synonym: "ependymocyte" NARROW [doi:10.53347/rID-51713] xref: BTO:0001724 xref: FMA:70550 is_a: CL:0000067 ! ciliated epithelial cell +is_a: CL:0000125 ! glial cell is_a: CL:0000710 ! neurecto-epithelial cell +intersection_of: CL:0000710 ! neurecto-epithelial cell +intersection_of: part_of UBERON:0004670 ! ependyma +relationship: develops_from CL:0000681 ! radial glial cell +relationship: directly_develops_from CL:0000681 ! radial glial cell +relationship: part_of UBERON:0004670 ! ependyma relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] @@ -15247,7 +15257,7 @@ xref: CALOHA:TS-2026 xref: CARO:0000077 xref: FMA:66768 xref: WBbt:0003672 -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell disjoint_from: CL:0000738 ! leukocyte relationship: part_of UBERON:0000483 ! epithelium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -15289,7 +15299,6 @@ subset: human_reference_atlas is_a: CL:0002139 ! endothelial cell of vascular tree intersection_of: CL:0000115 ! endothelial cell intersection_of: part_of UBERON:0001981 ! blood vessel -relationship: develops_from CL:0002546 ! embryonic blood vessel endothelial progenitor cell relationship: part_of UBERON:0001981 ! blood vessel relationship: part_of UBERON:0004638 ! blood vessel endothelium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -15312,14 +15321,19 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:0000076 name: squamous epithelial cell +def: "Any epithelial cell that is part of some squamous epithelium." [FBC:Autogenerated] subset: cellxgene_subset xref: CALOHA:TS-1249 is_a: CL:0000066 ! epithelial cell +intersection_of: CL:0000066 ! epithelial cell +intersection_of: part_of UBERON:0006914 ! squamous epithelium +relationship: part_of UBERON:0006914 ! squamous epithelium [Term] id: CL:0000077 name: mesothelial cell -def: "A flattened epithelial cell of mesenchymal origin that lines the serous cavity." [GOC:tfm, ISBN:0721662544] +def: "A flat, squamous-like epithelial cell of mesodermal origin. It forms the mesothelium, which lines the body's serous cavities including the pleural, peritoneal, and pericardial spaces. This cell plays a crucial role in synthesizing and secreting lubricants, such as glycosaminoglycans and surfactants, which minimize friction between adjacent tissues during movement." [GOC:tfm, ISBN:0721662544, PMID:26106328] +comment: Mesothelial cells, which morphologically resemble squamous epithelial cells, express both epithelial markers (cytokeratins) and mesenchymal markers (vimentin), reflecting their mesodermal origin. They feature surface microvilli and apical-basal polarity. Under certain conditions, they can undergo mesothelial-to-mesenchymal transition. These cells also produce extracellular matrix proteins, maintain serosal homeostasis, and facilitate fluid transport. {xref="PMID:26106328"} subset: cellxgene_subset subset: human_reference_atlas synonym: "mesotheliocyte" EXACT [] @@ -15327,11 +15341,13 @@ xref: FMA:66773 is_a: CL:0000076 ! squamous epithelial cell is_a: CL:0000213 ! lining cell is_a: CL:0002078 ! meso-epithelial cell +relationship: part_of UBERON:0001136 ! mesothelium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:0000079 name: stratified epithelial cell +def: "An epithelial cell, organized into multiple layers, with only the basal layer being in contact with the basement membrane." [doi:/10.1016/B978-0-12-410424-2.00003-2, https://www.biologyonline.com/dictionary/stratified-epithelium, Wikipedia:Epithelium] subset: cellxgene_subset is_a: CL:0000066 ! epithelial cell relationship: develops_from CL:0000357 ! stratified epithelial stem cell @@ -15340,7 +15356,7 @@ relationship: develops_from CL:0000357 ! stratified epithelial stem cell id: CL:0000080 name: circulating cell def: "A cell which moves among different tissues of the body, via blood, lymph, or other medium." [GOC:add] -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000000 ! cell intersection_of: part_of UBERON:0000179 ! haemolymphatic fluid relationship: part_of UBERON:0000179 ! haemolymphatic fluid @@ -15421,6 +15437,7 @@ xref: MESH:D010010 is_a: CL:0000518 ! phagocyte (sensu Vertebrata) is_a: CL:0000766 {is_inferred="true"} ! myeloid leukocyte is_a: CL:0001035 {is_inferred="true"} ! bone cell +is_a: PR:000050567 ! obsolete protein-containing material entity is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: CL:0000766 ! myeloid leukocyte intersection_of: capable_of GO:0045453 ! bone resorption @@ -15429,9 +15446,9 @@ intersection_of: has_part PR:000001937 ! tartrate-resistant acid phosphatase typ intersection_of: has_part PR:000001944 ! transcription factor PU.1 intersection_of: has_part PR:000007597 ! protein c-Fos intersection_of: has_part PR:000011178 ! nuclear factor NF-kappa-B p100 subunit -intersection_of: has_plasma_membrane_part PR:000001954 ! tumor necrosis factor receptor superfamily member 11A -intersection_of: has_plasma_membrane_part PR:000002062 ! macrophage colony-stimulating factor 1 receptor intersection_of: part_of UBERON:0001474 ! bone element +intersection_of: RO:0002104 PR:000001954 ! has plasma membrane part tumor necrosis factor receptor superfamily member 11A +intersection_of: RO:0002104 PR:000002062 ! has plasma membrane part macrophage colony-stimulating factor 1 receptor relationship: capable_of GO:0045453 ! bone resorption relationship: develops_from CL:0000576 ! monocyte relationship: has_part PR:000001850 ! cathepsin K @@ -15439,9 +15456,9 @@ relationship: has_part PR:000001937 ! tartrate-resistant acid phosphatase type 5 relationship: has_part PR:000001944 ! transcription factor PU.1 relationship: has_part PR:000007597 ! protein c-Fos relationship: has_part PR:000011178 ! nuclear factor NF-kappa-B p100 subunit -relationship: has_plasma_membrane_part PR:000001954 ! tumor necrosis factor receptor superfamily member 11A -relationship: has_plasma_membrane_part PR:000002062 ! macrophage colony-stimulating factor 1 receptor relationship: part_of UBERON:0001474 ! bone element +relationship: RO:0002104 PR:000001954 ! has plasma membrane part tumor necrosis factor receptor superfamily member 11A +relationship: RO:0002104 PR:000002062 ! has plasma membrane part macrophage colony-stimulating factor 1 receptor [Term] id: CL:0000094 @@ -15458,6 +15475,7 @@ xref: CALOHA:TS-0422 xref: FMA:62854 is_a: CL:0000081 ! blood cell is_a: CL:0000766 {is_inferred="true"} ! myeloid leukocyte +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000766 ! myeloid leukocyte intersection_of: capable_of GO:0008015 ! blood circulation intersection_of: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule @@ -15465,19 +15483,19 @@ intersection_of: CL:4030046 PR:000001020 ! lacks_plasma_membrane_part CD3 epsilo intersection_of: CL:4030046 PR:000001024 ! lacks_plasma_membrane_part neural cell adhesion molecule 1 intersection_of: CL:4030046 PR:000001084 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD8 alpha chain intersection_of: has_part GO:0030141 ! secretory granule -intersection_of: has_plasma_membrane_part PR:000001012 ! integrin alpha-M -intersection_of: has_plasma_membrane_part PR:000001332 ! carcinoembryonic antigen-related cell adhesion molecule 8 -intersection_of: has_plasma_membrane_part PR:000001969 ! urokinase plasminogen activator surface receptor +intersection_of: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M +intersection_of: RO:0002104 PR:000001332 ! has plasma membrane part carcinoembryonic antigen-related cell adhesion molecule 8 +intersection_of: RO:0002104 PR:000001969 ! has plasma membrane part urokinase plasminogen activator surface receptor relationship: capable_of GO:0008015 ! blood circulation relationship: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule relationship: CL:4030046 PR:000001020 ! lacks_plasma_membrane_part CD3 epsilon relationship: CL:4030046 PR:000001024 ! lacks_plasma_membrane_part neural cell adhesion molecule 1 relationship: CL:4030046 PR:000001084 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD8 alpha chain relationship: has_part GO:0030141 ! secretory granule -relationship: has_plasma_membrane_part PR:000001012 ! integrin alpha-M -relationship: has_plasma_membrane_part PR:000001332 ! carcinoembryonic antigen-related cell adhesion molecule 8 -relationship: has_plasma_membrane_part PR:000001969 ! urokinase plasminogen activator surface receptor relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M +relationship: RO:0002104 PR:000001332 ! has plasma membrane part carcinoembryonic antigen-related cell adhesion molecule 8 +relationship: RO:0002104 PR:000001969 ! has plasma membrane part urokinase plasminogen activator surface receptor [Term] id: CL:0000095 @@ -15549,8 +15567,8 @@ subset: cellxgene_subset xref: FMA:67282 is_a: CL:0000099 ! interneuron intersection_of: CL:0000099 ! interneuron -intersection_of: has_characteristic PATO:0070006 ! cortical bipolar morphology -relationship: has_characteristic PATO:0070006 ! cortical bipolar morphology +intersection_of: RO:0000053 PATO:0070006 ! has characteristic cortical bipolar morphology +relationship: RO:0000053 PATO:0070006 ! has characteristic cortical bipolar morphology [Term] id: CL:0000104 @@ -15560,8 +15578,8 @@ subset: BDS_subset xref: FMA:67287 is_a: CL:0000540 ! neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_characteristic PATO:0070026 ! multipolar neuron morphology -relationship: has_characteristic PATO:0070026 ! multipolar neuron morphology +intersection_of: RO:0000053 PATO:0070026 ! has characteristic multipolar neuron morphology +relationship: RO:0000053 PATO:0070026 ! has characteristic multipolar neuron morphology [Term] id: CL:0000107 @@ -15570,9 +15588,9 @@ def: "A neuron whose cell body is within an autonomic ganglion." [GOC:tfm] xref: FMA:80121 is_a: CL:2000032 ! peripheral nervous system neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:0002410 ! autonomic nervous system +intersection_of: RO:0002100 UBERON:0002410 ! has soma location autonomic nervous system relationship: develops_from CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: has_soma_location UBERON:0002410 ! autonomic nervous system +relationship: RO:0002100 UBERON:0002410 ! has soma location autonomic nervous system [Term] id: CL:0000108 @@ -15595,12 +15613,13 @@ def: "A vertebrate phagocyte with a single nucleus." [GOC:add, GOC:tfm, ISBN:078 subset: cellxgene_subset subset: human_reference_atlas xref: BTO:0001433 +xref: https://cellxgene.cziscience.com/cellguide/CL_0000113 is_a: CL:0000518 {is_inferred="true"} ! phagocyte (sensu Vertebrata) is_a: CL:0000842 ! mononuclear cell intersection_of: CL:0000518 ! phagocyte (sensu Vertebrata) -intersection_of: has_characteristic PATO:0001407 ! mononucleate -relationship: has_characteristic PATO:0001407 ! mononucleate +intersection_of: RO:0000053 PATO:0001407 ! has characteristic mononucleate relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0000053 PATO:0001407 ! has characteristic mononucleate [Term] id: CL:0000114 @@ -15623,6 +15642,7 @@ xref: BTO:0001176 xref: CALOHA:TS-0278 xref: FMA:66772 is_a: CL:0000213 ! lining cell +is_a: CL:0000255 ! eukaryotic cell is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from CL:0000222 ! mesodermal cell relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -15644,10 +15664,10 @@ is_a: CL:0000104 ! multipolar neuron is_a: CL:0011005 ! GABAergic interneuron intersection_of: CL:0000099 ! interneuron intersection_of: capable_of GO:0061534 ! gamma-aminobutyric acid secretion, neurotransmission -intersection_of: has_characteristic PATO:0070002 ! basket cell morphology +intersection_of: RO:0000053 PATO:0070002 ! has characteristic basket cell morphology relationship: capable_of GO:0061534 ! gamma-aminobutyric acid secretion, neurotransmission relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 -relationship: has_characteristic PATO:0070002 ! basket cell morphology +relationship: RO:0000053 PATO:0070002 ! has characteristic basket cell morphology [Term] id: CL:0000119 @@ -15682,10 +15702,11 @@ synonym: "Purkinje neuron" EXACT [PMID:28821816] xref: BTO:0001011 xref: CALOHA:TS-0845 xref: FMA:67969 +xref: https://cellxgene.cziscience.com/cellguide/CL_0000121 is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) is_a: CL:0000527 ! efferent neuron is_a: CL:1001611 ! cerebellar neuron -relationship: has_soma_location UBERON:0002129 ! cerebellar cortex +relationship: RO:0002100 UBERON:0002129 ! has soma location cerebellar cortex [Term] id: CL:0000122 @@ -15697,18 +15718,17 @@ xref: BTO:0002316 is_a: CL:0000104 ! multipolar neuron is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) intersection_of: CL:0000117 ! CNS neuron (sensu Vertebrata) -intersection_of: has_characteristic PATO:0070010 ! stellate morphology -relationship: has_characteristic PATO:0070010 ! stellate morphology +intersection_of: RO:0000053 PATO:0070010 ! has characteristic stellate morphology +relationship: RO:0000053 PATO:0070010 ! has characteristic stellate morphology [Term] id: CL:0000123 name: neuron associated cell (sensu Vertebrata) subset: cellxgene_subset is_a: CL:0000095 ! neuron associated cell -is_a: CL:0000255 ! eukaryotic cell is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from CL:0000333 ! migratory neural crest cell -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata +relationship: in_taxon NCBITaxon:7742 ! Vertebrata [Term] id: CL:0000125 @@ -15723,6 +15743,7 @@ synonym: "neuroglial cell" EXACT [] xref: BTO:0002606 xref: CALOHA:TS-0415 xref: FMA:54536 +xref: https://cellxgene.cziscience.com/cellguide/CL_0000125 is_a: CL:0000095 ! neuron associated cell relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -15910,6 +15931,7 @@ xref: FMA:70545 xref: MESH:D008544 xref: VHOG:0001679 is_a: CL:0000147 ! pigment cell +is_a: CL:0000255 ! eukaryotic cell is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: CL:0000147 ! pigment cell intersection_of: develops_from CL:0000541 ! melanoblast @@ -15954,6 +15976,7 @@ def: "A cell of an exocrine gland; i.e. a gland that discharges its secretion vi subset: general_cell_types_upper_slim xref: FMA:16014 is_a: CL:0000151 ! secretory cell +is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000151 ! secretory cell intersection_of: part_of UBERON:0002365 ! exocrine gland relationship: part_of UBERON:0002365 ! exocrine gland @@ -16010,8 +16033,8 @@ xref: FMA:14119 is_a: CL:0000157 ! surfactant secreting cell is_a: CL:0002202 ! epithelial cell of tracheobronchial tree is_a: CL:0011026 ! progenitor cell -relationship: has_plasma_membrane_part GO:0005902 ! microvillus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 GO:0005902 ! has plasma membrane part microvillus [Term] id: CL:0000159 @@ -16027,6 +16050,7 @@ synonym: "chalice cell" EXACT [] xref: BTO:0001540 xref: FMA:13148 xref: http://en.wikipedia.org/wiki/Goblet_cell +xref: https://cellxgene.cziscience.com/cellguide/CL_0000160 is_a: CL:0000066 ! epithelial cell relationship: capable_of GO:0070254 ! mucus secretion relationship: has_part GO:0005902 ! microvillus @@ -16057,6 +16081,7 @@ is_a: CL:0000151 ! secretory cell is_a: CL:0000164 {gci_relation="part_of", gci_filler="UBERON:0000945"} ! enteroendocrine cell is_a: CL:0000164 {gci_filler="UBERON:0000160", gci_relation="part_of"} ! enteroendocrine cell is_a: CL:0000164 {gci_filler="UBERON:0001264", gci_relation="part_of"} ! enteroendocrine cell +is_a: CL:0000255 ! eukaryotic cell relationship: part_of UBERON:0000949 ! endocrine system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -16067,6 +16092,7 @@ def: "An endocrine cell that is located in the epithelium of the gastrointestina subset: cellxgene_subset xref: BTO:0003865 xref: FMA:62930 +xref: https://cellxgene.cziscience.com/cellguide/CL_0000164 xref: MESH:D019858 is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0000163 ! endocrine cell @@ -16098,6 +16124,7 @@ subset: cellxgene_subset synonym: "phaeochromocyte" EXACT [] xref: BTO:0000259 xref: FMA:69263 +xref: https://cellxgene.cziscience.com/cellguide/CL_0000166 is_a: CL:0000029 ! neural crest derived neuron is_a: CL:0000568 ! amine precursor uptake and decarboxylation cell @@ -16117,6 +16144,7 @@ def: "Any secretory cell that is capable of some insulin secretion." [FBC:Autoge xref: BTO:0000783 is_a: CL:0000154 ! protein secreting cell is_a: CL:0000167 ! peptide hormone secreting cell +is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000151 ! secretory cell intersection_of: capable_of GO:0030073 ! insulin secretion relationship: capable_of GO:0030073 ! insulin secretion @@ -16261,6 +16289,7 @@ xref: BTO:0000755 xref: CALOHA:TS-1150 xref: EMAPA:29655 xref: FMA:72297 +xref: https://cellxgene.cziscience.com/cellguide/CL_0000178 xref: MESH:D007985 is_a: CL:0000177 ! testosterone secreting cell is_a: CL:4030031 ! interstitial cell @@ -16272,6 +16301,7 @@ id: CL:0000179 name: progesterone secreting cell def: "Any secretory cell that is capable of some progesterone secretion." [FBC:Autogenerated] is_a: CL:0000174 ! steroid hormone secreting cell +is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000151 ! secretory cell intersection_of: capable_of GO:0042701 ! progesterone secretion relationship: capable_of GO:0042701 ! progesterone secretion @@ -16286,6 +16316,7 @@ subset: human_reference_atlas xref: BTO:0000575 xref: CALOHA:TS-0454 xref: FMA:14515 +xref: https://cellxgene.cziscience.com/cellguide/CL_0000182 is_a: CL:0000066 ! epithelial cell is_a: CL:0000417 ! endopolyploid cell is_a: UBERON:0004119 ! endoderm-derived structure @@ -16328,6 +16359,7 @@ xref: CALOHA:TS-2032 xref: FMA:67328 xref: WBbt:0003675 is_a: CL:0000183 ! contractile cell +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0000393 ! electrically responsive cell is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from CL:0000056 ! myoblast @@ -16344,7 +16376,7 @@ synonym: "skeletal muscle cell" EXACT [] xref: BTO:0004392 xref: CALOHA:TS-2158 xref: FMA:9727 -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: CL:0000000 ! cell intersection_of: part_of UBERON:0001134 ! skeletal muscle tissue @@ -16394,7 +16426,7 @@ name: sensory receptor cell def: "A cell that is capable of detection of a stimulus involved in sensory perception." [] synonym: "receptor cell" EXACT [] xref: MESH:D011984 -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000000 ! cell intersection_of: capable_of GO:0050906 ! detection of stimulus involved in sensory perception intersection_of: part_of UBERON:0001032 ! sensory system @@ -16483,15 +16515,16 @@ relationship: capable_of GO:0050912 ! detection of chemical stimulus involved in [Term] id: CL:0000210 name: photoreceptor cell -def: "A cell specialized to detect and transduce light." [MESH:D010786] +def: "A cell specialized in detecting light stimuli that are involved in visual perception." [MESH:D010786] subset: cellxgene_subset xref: BTO:0001060 xref: CALOHA:TS-0868 xref: FMA:86740 -is_a: CL:0000006 {is_inferred="true"} ! neuronal receptor cell +is_a: CL:0000101 ! sensory neuron +is_a: CL:0008028 ! visual system neuron intersection_of: CL:0000540 ! neuron -intersection_of: capable_of GO:0050962 ! detection of light stimulus involved in sensory perception -relationship: capable_of GO:0050962 ! detection of light stimulus involved in sensory perception +intersection_of: capable_of GO:0050908 ! detection of light stimulus involved in visual perception +relationship: capable_of GO:0050908 ! detection of light stimulus involved in visual perception property_value: depiction "https://www.swissbiopics.org/api/image/Photoreceptor_cell.svg" xsd:anyURI [Term] @@ -16574,6 +16607,7 @@ name: ectodermal cell def: "A cell of the outer of the three germ layers of the embryo." [MESH:D004475] synonym: "ectoderm cell" EXACT [] xref: FMA:72549 +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0002321 ! embryonic cell (metazoa) relationship: part_of UBERON:0000924 ! ectoderm @@ -16585,6 +16619,7 @@ subset: cellxgene_subset synonym: "mesoblast" EXACT [] synonym: "mesoderm cell" EXACT [] xref: FMA:72554 +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0002321 ! embryonic cell (metazoa) relationship: part_of UBERON:0000926 ! mesoderm @@ -16594,6 +16629,7 @@ name: endodermal cell def: "A cell of the inner of the three germ layers of the embryo." [MESH:D004707] synonym: "endoderm cell" EXACT [] xref: FMA:72555 +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0002321 ! embryonic cell (metazoa) relationship: part_of UBERON:0000925 ! endoderm @@ -16605,41 +16641,31 @@ synonym: "non-nucleated cell" EXACT [] xref: FMA:68647 is_a: CL:0000000 ! cell intersection_of: CL:0000000 ! cell -intersection_of: has_characteristic PATO:0001405 ! anucleate +intersection_of: RO:0000053 PATO:0001405 ! has characteristic anucleate disjoint_from: CL:0002242 ! nucleate cell -relationship: has_characteristic PATO:0001405 ! anucleate +relationship: RO:0000053 PATO:0001405 ! has characteristic anucleate [Term] id: CL:0000226 name: single nucleate cell def: "A cell with a single nucleus." [FB:ma, GOC:tfm] +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0002242 ! nucleate cell intersection_of: CL:0000000 ! cell -intersection_of: has_characteristic PATO:0001407 ! mononucleate -relationship: has_characteristic PATO:0001407 ! mononucleate - -[Term] -id: CL:0000227 -name: binucleate cell -def: "Any cell that has characteristic some binucleate." [FBC:Autogenerated] -is_a: CL:0000228 ! multinucleate cell -intersection_of: CL:0000000 ! cell -intersection_of: has_characteristic PATO:0001406 ! binucleate -relationship: has_characteristic PATO:0001406 ! binucleate +intersection_of: RO:0000053 PATO:0001407 ! has characteristic mononucleate +relationship: RO:0000053 PATO:0001407 ! has characteristic mononucleate [Term] id: CL:0000228 name: multinucleate cell -def: "A cell with more than one nucleus." [FB:ma] -synonym: "syncitium" EXACT [] -synonym: "syncytial cell" EXACT [] -synonym: "syncytium" EXACT [] -xref: AEO:0000203 -xref: WBbt:0008074 +def: "A cell with more than one nucleus." [FB:ma, Wikipedia:Multinucleate] +synonym: "multinucleated cells" EXACT [Wikipedia:Multinucleate] +synonym: "polynuclear cells" EXACT [Wikipedia:Multinucleate] +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0002242 ! nucleate cell intersection_of: CL:0000000 ! cell -intersection_of: has_characteristic PATO:0001908 ! multinucleate -relationship: has_characteristic PATO:0001908 ! multinucleate +intersection_of: RO:0000053 PATO:0001908 ! has characteristic multinucleate +relationship: RO:0000053 PATO:0001908 ! has characteristic multinucleate [Term] id: CL:0000232 @@ -16661,14 +16687,14 @@ intersection_of: capable_of GO:0008015 ! blood circulation intersection_of: capable_of GO:0015671 ! oxygen transport intersection_of: CL:4030045 GO:0005840 ! lacks_part ribosome intersection_of: CL:4030046 PR:000001945 ! lacks_plasma_membrane_part transferrin receptor protein 1 -intersection_of: has_characteristic PATO:0002039 ! biconcave +intersection_of: RO:0000053 PATO:0002039 ! has characteristic biconcave relationship: capable_of GO:0008015 ! blood circulation relationship: capable_of GO:0015671 ! oxygen transport relationship: CL:4030045 GO:0005840 ! lacks_part ribosome relationship: CL:4030046 PR:000001945 ! lacks_plasma_membrane_part transferrin receptor protein 1 relationship: develops_from CL:0000558 ! reticulocyte -relationship: has_characteristic PATO:0002039 ! biconcave relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0000053 PATO:0002039 ! has characteristic biconcave [Term] id: CL:0000233 @@ -16690,8 +16716,8 @@ is_a: CL:0000458 ! serotonin secreting cell is_a: CL:0000763 {is_inferred="true"} ! myeloid cell relationship: capable_of_part_of GO:0007596 ! blood coagulation relationship: develops_from CL:0000556 ! megakaryocyte -relationship: has_characteristic PATO:0001874 ! discoid relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0000053 PATO:0001874 ! has characteristic discoid [Term] id: CL:0000234 @@ -16767,12 +16793,40 @@ is_a: CL:0000311 ! keratin accumulating cell is_a: CL:0002077 ! ecto-epithelial cell relationship: develops_from CL:0000114 ! surface ectodermal cell +[Term] +id: CL:0000239 +name: brush border epithelial cell +def: "An epithelial cell characterized by the presence of a brush border on its apical surface, which increases the surface area for absorption." [] +comment: All brush border cells are columnar-cuboidal. The formal logical definition of this term asserts this. Brush border epithelial cells are predominantly found lining the small intestine and the proximal tubules of the kidneys. +xref: https://doi.org/10.1152/ajpgi.00005.2011 +xref: PMID:25422372 +is_a: CL:0000075 ! columnar/cuboidal epithelial cell +intersection_of: CL:0000066 ! epithelial cell +intersection_of: has_part GO:0005903 ! brush border +relationship: has_part GO:0005903 ! brush border + [Term] id: CL:0000240 name: stratified squamous epithelial cell +def: "A stratified epithelial cell that is part of squamous epithelium, characterized by multiple layers of cells. The basal layer is directly attached to the basement membrane and the apical layer consists of flattened squamous cells. This provides a protective barrier, commonly found in areas subject to abrasion, such as the skin, oral cavity, and esophagus." [PMID:30422572, Wikipedia:Epithelium, Wikipedia:Stratified_squamous_epithelium] subset: human_reference_atlas is_a: CL:0000076 ! squamous epithelial cell is_a: CL:0000079 ! stratified epithelial cell +intersection_of: CL:0000079 ! stratified epithelial cell +intersection_of: part_of UBERON:0006915 ! stratified squamous epithelium +relationship: part_of UBERON:0006915 ! stratified squamous epithelium +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens + +[Term] +id: CL:0000241 +name: stratified cuboidal epithelial cell +def: "A stratified epithelial cell that is part of cuboidal epithelium, characterized by multiple layers of cuboidal cells forming the apical layer. This provides a protective lining for ducts in large glands, such as sweat glands." [PMID:30422572, Wikipedia:Stratified_cuboidal_epithelium] +subset: human_reference_atlas +is_a: CL:0000075 ! columnar/cuboidal epithelial cell +is_a: CL:0000079 ! stratified epithelial cell +intersection_of: CL:0000079 ! stratified epithelial cell +intersection_of: part_of UBERON:0010077 ! cuboidal epithelium +relationship: part_of UBERON:0010077 ! cuboidal epithelium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] @@ -16801,22 +16855,22 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:0000255 name: eukaryotic cell -def: "Any cell that only exists in Eukaryota." [FBC:Autogenerated] +def: "Any cell that in taxon some Eukaryota." [FBC:Autogenerated] subset: cellxgene_subset xref: MESH:D005057 is_a: CL:0000000 ! cell intersection_of: CL:0000000 ! cell -intersection_of: only_in_taxon NCBITaxon:2759 ! Eukaryota -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota +intersection_of: in_taxon NCBITaxon:2759 ! Eukaryota +relationship: in_taxon NCBITaxon:2759 ! Eukaryota [Term] id: CL:0000257 name: Eumycetozoan cell -def: "Any cell that only exists in Eumycetozoa." [FBC:Autogenerated] +def: "Any cell that in taxon some Eumycetozoa." [FBC:Autogenerated] is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000000 ! cell -intersection_of: only_in_taxon NCBITaxon:142796 ! Eumycetozoa -relationship: only_in_taxon NCBITaxon:142796 ! Eumycetozoa +intersection_of: in_taxon NCBITaxon:142796 ! Eumycetozoa +relationship: in_taxon NCBITaxon:142796 ! Eumycetozoa [Term] id: CL:0000287 @@ -16825,6 +16879,7 @@ def: "Any photoreceptor cell that is part of some eye." [FBC:Autogenerated] subset: cellxgene_subset subset: eye_upper_slim subset: human_reference_atlas +is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0000210 ! photoreceptor cell intersection_of: CL:0000210 ! photoreceptor cell intersection_of: part_of UBERON:0000970 ! eye @@ -16860,9 +16915,9 @@ is_a: CL:0000413 ! haploid cell is_a: CL:0000586 {is_inferred="true"} ! germ cell intersection_of: CL:0000586 ! germ cell intersection_of: capable_of GO:0009566 ! fertilization -intersection_of: has_characteristic PATO:0001375 ! haploid +intersection_of: RO:0000053 PATO:0001375 ! has characteristic haploid relationship: capable_of GO:0009566 ! fertilization -relationship: has_characteristic PATO:0001375 ! haploid +relationship: RO:0000053 PATO:0001375 ! has characteristic haploid [Term] id: CL:0000306 @@ -16957,14 +17012,21 @@ name: pulmonary alveolar epithelial cell def: "An epithelial cell that lines the peripheral gas exchange region of the lungs of air-breathing vertebrates." [GOC:tfm, PMID:20054144, PMID:29463737] subset: cellxgene_subset synonym: "alveolar epithelial cell" EXACT [] +synonym: "alveolus of lung epithelial cell" EXACT [] +synonym: "epithelial cell of alveolus of lung" EXACT [] synonym: "pneumocyte" EXACT [PMID:32491474] synonym: "pneumonocyte" EXACT [] xref: BTO:0000395 xref: CALOHA:TS-2168 xref: FMA:62499 +xref: MESH:D056809 +is_a: CL:0000076 ! squamous epithelial cell is_a: CL:0000082 ! epithelial cell of lung -is_a: CL:0010003 ! epithelial cell of alveolus of lung +intersection_of: CL:0000066 ! epithelial cell +intersection_of: part_of UBERON:0004821 ! pulmonary alveolus epithelium +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0004821 ! pulmonary alveolus epithelium +property_value: dcterms-date "2024-09-02T08:27:21Z" xsd:dateTime [Term] id: CL:0000325 @@ -17045,6 +17107,7 @@ id: CL:0000347 name: scleral cell def: "A cell of the sclera of the eye." [GOC:add] subset: eye_upper_slim +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0000293 ! structural cell is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: CL:0000293 ! structural cell @@ -17057,6 +17120,7 @@ id: CL:0000348 name: choroidal cell of the eye def: "A structural cell that is part of optic choroid." [GOC:add] subset: eye_upper_slim +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0000293 ! structural cell is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: CL:0000293 ! structural cell @@ -17069,7 +17133,7 @@ id: CL:0000349 name: extraembryonic cell def: "Any cell that is part of some extraembryonic structure." [FBC:Autogenerated] subset: general_cell_types_upper_slim -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000000 ! cell intersection_of: part_of UBERON:0000478 ! extraembryonic structure relationship: part_of UBERON:0000478 ! extraembryonic structure @@ -17086,7 +17150,7 @@ relationship: part_of UBERON:0010302 ! amnioserosa [Term] id: CL:0000351 name: trophoblast cell -def: "An extraembryonic cell that develops from a trophectodermal cell. This cell is found in the outer layer of the blastocyst and can invade other structures in the uterus once the blastocyst implants into the uterine wall. A trophoblast cell is involved in the implantation of the embryo into the uterine wall, placental formation, remodelling of maternal vasculature in the uterus, nutrient and gas exchange, hormone production, and immune modulation to support fetal development." [GOC:tfm, MESH:D014327, PMID:37630754] {comment="doi:10.1007/978-3-030-84725-8"} +def: "An extraembryonic cell that develops from a trophectodermal cell. This cell is found in the outer layer of the blastocyst and can invade other structures in the uterus once the blastocyst implants into the uterine wall. A trophoblast cell is involved in the implantation of the embryo into the uterine wall, placental formation, remodelling of maternal vasculature in the uterus, nutrient and gas exchange, hormone production, and immune modulation to support fetal development." [doi:10.1007/978-3-030-84725-8, GOC:tfm, MESH:D014327, PMID:37630754] synonym: "trophoblastic cell" EXACT [doi:10.1007/978-3-030-84725-8] xref: FMA:83028 is_a: CL:0000349 {is_inferred="true"} ! extraembryonic cell @@ -17160,6 +17224,7 @@ id: CL:0000361 name: gastrula cell def: "A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers." [MESH:D005775] is_a: CL:0000007 ! early embryonic cell (metazoa) +is_a: CL:0000255 ! eukaryotic cell relationship: part_of UBERON:0004734 ! gastrula [Term] @@ -17190,16 +17255,15 @@ is_a: CL:0000007 ! early embryonic cell (metazoa) is_a: CL:0000255 ! eukaryotic cell is_a: CL:0010017 ! zygote intersection_of: CL:0010017 ! zygote -intersection_of: only_in_taxon NCBITaxon:33208 ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +intersection_of: in_taxon NCBITaxon:33208 ! Metazoa +relationship: in_taxon NCBITaxon:33208 ! Metazoa [Term] id: CL:0000373 name: histoblast def: "A progenitor cell found in the larval epidermis of insects and that gives rise to the adult abdominal epidermis." [doi:10.1016/j.cub.2022.01.045] -is_a: CL:0000255 ! eukaryotic cell is_a: CL:0011026 ! progenitor cell -relationship: only_in_taxon NCBITaxon:50557 ! Insecta +relationship: in_taxon NCBITaxon:50557 ! Insecta [Term] id: CL:0000377 @@ -17225,7 +17289,7 @@ def: "A blood cell of the circulatory system of arthropods." [doi:10.1016/B978-0 is_a: CL:0000255 ! eukaryotic cell is_a: CL:0000390 ! blood cell (sensu Nematoda and Protostomia) relationship: develops_from CL:0000385 ! prohemocyte (sensu Nematoda and Protostomia) -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda +relationship: in_taxon NCBITaxon:6656 ! Arthropoda [Term] id: CL:0000388 @@ -17259,8 +17323,8 @@ def: "Any interneuron that has its soma located in some ganglion." [FBC:Autogene subset: cellxgene_subset is_a: CL:0000099 {is_inferred="true"} ! interneuron intersection_of: CL:0000099 ! interneuron -intersection_of: has_soma_location UBERON:0000045 ! ganglion -relationship: has_soma_location UBERON:0000045 ! ganglion +intersection_of: RO:0002100 UBERON:0000045 ! has soma location ganglion +relationship: RO:0002100 UBERON:0000045 ! has soma location ganglion [Term] id: CL:0000402 @@ -17271,9 +17335,9 @@ subset: human_reference_atlas is_a: CL:0000099 ! interneuron is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000099 ! interneuron -intersection_of: has_soma_location UBERON:0001017 ! central nervous system -relationship: has_soma_location UBERON:0001017 ! central nervous system +intersection_of: RO:0002100 UBERON:0001017 ! has soma location central nervous system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002100 UBERON:0001017 ! has soma location central nervous system [Term] id: CL:0000404 @@ -17291,9 +17355,9 @@ is_a: CL:0000015 {is_inferred="true"} ! male germ cell is_a: CL:0000300 {is_inferred="true"} ! gamete intersection_of: CL:0000015 ! male germ cell intersection_of: capable_of GO:0009566 ! fertilization -intersection_of: has_characteristic PATO:0001375 ! haploid +intersection_of: RO:0000053 PATO:0001375 ! has characteristic haploid relationship: capable_of GO:0009566 ! fertilization -relationship: has_characteristic PATO:0001375 ! haploid +relationship: RO:0000053 PATO:0001375 ! has characteristic haploid [Term] id: CL:0000412 @@ -17301,8 +17365,8 @@ name: polyploid cell def: "A cell that contains more than two haploid sets of chromosomes." [FB:ma, https://bio.libretexts.org/Bookshelves/Introductory_and_General_Biology/Biology_(Kimball)/07%3A_Cell_Division/7.04%3A_Polyploidy, PMID:32646579] is_a: CL:0000000 ! cell intersection_of: CL:0000000 ! cell -intersection_of: has_characteristic PATO:0001377 ! polyploid -relationship: has_characteristic PATO:0001377 ! polyploid +intersection_of: RO:0000053 PATO:0001377 ! has characteristic polyploid +relationship: RO:0000053 PATO:0001377 ! has characteristic polyploid [Term] id: CL:0000413 @@ -17310,8 +17374,8 @@ name: haploid cell def: "A cell whose nucleus contains a single haploid genome." [FB:ma, GOC:tfm] is_a: CL:0000000 ! cell intersection_of: CL:0000000 ! cell -intersection_of: has_characteristic PATO:0001375 ! haploid -relationship: has_characteristic PATO:0001375 ! haploid +intersection_of: RO:0000053 PATO:0001375 ! has characteristic haploid +relationship: RO:0000053 PATO:0001375 ! has characteristic haploid [Term] id: CL:0000417 @@ -17331,6 +17395,7 @@ name: xanthophore cell def: "A pigment cell derived from the neural crest. Contains cartenoid pigments in structures called pterinosomes or xanthosomes. This gives an appearance ranging from a golden yellow to orange and red." [SANBI:mhl] synonym: "xanthophore" RELATED [] is_a: CL:0000147 ! pigment cell +is_a: CL:0000255 ! eukaryotic cell is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from CL:0005002 ! xanthoblast @@ -17340,6 +17405,7 @@ name: iridophore def: "A pigment cell derived from the neural crest. The cell contains flat light-reflecting platelets, probably of guanine, in stacks called reflecting platelets or iridisomes. The color-generating components produce a silver, gold, or iridescent color." [SANBI:mhl] synonym: "guanophore" RELATED [] is_a: CL:0000147 ! pigment cell +is_a: CL:0000255 ! eukaryotic cell is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from CL:0005001 ! iridoblast @@ -17392,8 +17458,7 @@ name: follicle stem cell (sensu Arthropoda) def: "A stem cell that gives rise to the follicle cells that surround the oocyte in female arthropods." [doi:10.1016/B978-012369493-5.50005-5, doi:10.1038/s41467-020-19361-0, doi:10.1242/dev.121.11.3797] synonym: "somatic stem cell" BROAD [doi:10.1016/j.devcel.2005.08.012] is_a: CL:0000036 ! epithelial fate stem cell -is_a: CL:0000255 ! eukaryotic cell -relationship: only_in_taxon NCBITaxon:6656 {IAO:0000233="https://github.com/obophenotype/cell-ontology/issues/1943"} ! Arthropoda +relationship: in_taxon NCBITaxon:6656 {IAO:0000233="https://github.com/obophenotype/cell-ontology/issues/1943"} ! Arthropoda [Term] id: CL:0000443 @@ -17411,10 +17476,10 @@ def: "A muscle cell in which the fibers are organised into sarcomeres but in whi comment: Examples include the somatic muscles of nemotodes and cephalopods. is_a: CL:0000737 ! striated muscle cell intersection_of: CL:0000187 ! muscle cell -intersection_of: has_characteristic PATO:0002479 ! obliquely striated intersection_of: has_part GO:0030017 ! sarcomere -relationship: has_characteristic PATO:0002479 ! obliquely striated +intersection_of: RO:0000053 PATO:0002479 ! has characteristic obliquely striated relationship: has_part GO:0030017 ! sarcomere +relationship: RO:0000053 PATO:0002479 ! has characteristic obliquely striated [Term] id: CL:0000446 @@ -17474,6 +17539,7 @@ xref: FMA:83036 xref: MESH:D003713 is_a: CL:0000113 ! mononuclear phagocyte is_a: CL:0000145 ! professional antigen presenting cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000738 ! leukocyte intersection_of: capable_of GO:0001816 ! cytokine production intersection_of: capable_of GO:0002504 ! antigen processing and presentation of peptide or polysaccharide antigen via MHC class II @@ -17484,8 +17550,8 @@ intersection_of: CL:4030046 PR:000001003 ! lacks_plasma_membrane_part CD34 molec intersection_of: CL:4030046 PR:000001020 ! lacks_plasma_membrane_part CD3 epsilon intersection_of: CL:4030046 PR:000001024 ! lacks_plasma_membrane_part neural cell adhesion molecule 1 intersection_of: CL:4030046 PR:000001289 ! lacks_plasma_membrane_part membrane-spanning 4-domains subfamily A member 1 -intersection_of: has_characteristic PATO:0001407 ! mononucleate intersection_of: has_part GO:0042613 ! MHC class II protein complex +intersection_of: RO:0000053 PATO:0001407 ! has characteristic mononucleate disjoint_from: CL:0000542 ! lymphocyte relationship: capable_of GO:0001816 ! cytokine production relationship: capable_of GO:0002504 ! antigen processing and presentation of peptide or polysaccharide antigen via MHC class II @@ -17496,9 +17562,9 @@ relationship: CL:4030046 PR:000001003 ! lacks_plasma_membrane_part CD34 molecule relationship: CL:4030046 PR:000001020 ! lacks_plasma_membrane_part CD3 epsilon relationship: CL:4030046 PR:000001024 ! lacks_plasma_membrane_part neural cell adhesion molecule 1 relationship: CL:4030046 PR:000001289 ! lacks_plasma_membrane_part membrane-spanning 4-domains subfamily A member 1 -relationship: has_characteristic PATO:0001407 ! mononucleate relationship: has_part GO:0042613 ! MHC class II protein complex relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0000053 PATO:0001407 ! has characteristic mononucleate [Term] id: CL:0000453 @@ -17516,11 +17582,11 @@ is_a: CL:0000766 ! myeloid leukocyte is_a: CL:0000990 {is_inferred="true"} ! conventional dendritic cell intersection_of: CL:0000990 ! conventional dendritic cell intersection_of: capable_of GO:0002828 ! regulation of type 2 immune response -intersection_of: has_plasma_membrane_part PR:000001293 ! C-type lectin domain family 4 member K +intersection_of: RO:0002104 PR:000001293 ! has plasma membrane part C-type lectin domain family 4 member K relationship: capable_of GO:0002828 ! regulation of type 2 immune response relationship: develops_from CL:0000763 ! myeloid cell -relationship: has_plasma_membrane_part PR:000001293 ! C-type lectin domain family 4 member K relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:000001293 ! has plasma membrane part C-type lectin domain family 4 member K [Term] id: CL:0000454 @@ -17605,11 +17671,10 @@ name: follicle cell of egg chamber def: "A somatic epithelial cell of the insect egg chamber." [] synonym: "follicle cell" BROAD [] synonym: "ovarian follicle cell" BROAD [] -is_a: CL:0000255 ! eukaryotic cell is_a: CL:0000500 ! follicular epithelial cell is_a: CL:2000064 ! ovarian surface epithelial cell relationship: develops_from CL:0000441 ! follicle stem cell (sensu Arthropoda) -relationship: only_in_taxon NCBITaxon:50557 {source="https://github.com/obophenotype/cell-ontology/issues/589"} ! Insecta +relationship: in_taxon NCBITaxon:50557 {source="https://github.com/obophenotype/cell-ontology/issues/589"} ! Insecta [Term] id: CL:0000482 @@ -17665,10 +17730,10 @@ synonym: "granulosa cell of ovary" EXACT [] xref: BTO:0000542 xref: CALOHA:TS-0729 xref: FMA:18718 +xref: https://cellxgene.cziscience.com/cellguide/CL_0000501 is_a: CL:0000174 ! steroid hormone secreting cell is_a: CL:0002174 ! follicular cell of ovary relationship: develops_from CL:4033066 ! pre-granulosa cell -relationship: directly_develops_from CL:4033066 ! pre-granulosa cell [Term] id: CL:0000502 @@ -17677,6 +17742,7 @@ def: "A cell found throughout the gastrointestinal tract and in the pancreas. Th subset: cellxgene_subset synonym: "D cell" EXACT [] xref: FMA:62935 +xref: https://cellxgene.cziscience.com/cellguide/CL_0000502 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0000172 ! somatostatin secreting cell @@ -17781,16 +17847,16 @@ name: phagocyte (sensu Vertebrata) def: "A phagocyte in vertebrates that is able to phagocytosis." [GOC:tfm] is_a: CL:0000234 ! phagocyte is_a: CL:0000255 ! eukaryotic cell -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata +relationship: in_taxon NCBITaxon:7742 ! Vertebrata [Term] id: CL:0000521 name: fungal cell -def: "Any cell that only exists in Fungi." [FBC:Autogenerated] +def: "Any cell that in taxon some Fungi." [FBC:Autogenerated] is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000000 ! cell -intersection_of: only_in_taxon NCBITaxon:4751 ! Fungi -relationship: only_in_taxon NCBITaxon:4751 ! Fungi +intersection_of: in_taxon NCBITaxon:4751 ! Fungi +relationship: in_taxon NCBITaxon:4751 ! Fungi [Term] id: CL:0000525 @@ -17803,13 +17869,13 @@ synonym: "syncytial trophoblast cell" EXACT [PMID:11787150] synonym: "syncytiotrophoblastic cell" EXACT [PMID:21733368] synonym: "syntrophoblast cell" RELATED [] xref: FMA:83043 -is_a: CL:0000228 ! multinucleate cell is_a: CL:0000351 ! trophoblast cell +is_a: CL:4052002 ! syncytial cell intersection_of: CL:0000351 ! trophoblast cell -intersection_of: has_characteristic PATO:0001908 ! multinucleate -relationship: has_characteristic PATO:0001908 ! multinucleate +intersection_of: RO:0000053 PATO:0001908 ! has characteristic multinucleate relationship: part_of UBERON:0000371 ! syncytiotrophoblast relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0000053 PATO:0001908 ! has characteristic multinucleate property_value: seeAlso "https://github.com/obophenotype/cell-ontology/issues/2100" xsd:string [Term] @@ -17877,17 +17943,17 @@ xref: MESH:D008214 xref: VHOG:0001535 is_a: CL:0000842 ! mononuclear cell intersection_of: CL:0000738 ! leukocyte -intersection_of: has_characteristic PATO:0001407 ! mononucleate -intersection_of: has_characteristic PATO:0040072 ! high nuclear/cytoplasmic ratio intersection_of: has_part CL:0017500 ! neutrophillic cytoplasm intersection_of: has_part GO:0000792 ! heterochromatin +intersection_of: RO:0000053 PATO:0001407 ! has characteristic mononucleate +intersection_of: RO:0000053 PATO:0040072 ! has characteristic high nuclear/cytoplasmic ratio disjoint_from: CL:0000766 ! myeloid leukocyte relationship: develops_from CL:0000051 ! common lymphoid progenitor -relationship: has_characteristic PATO:0001407 ! mononucleate -relationship: has_characteristic PATO:0040072 ! high nuclear/cytoplasmic ratio relationship: has_part CL:0017500 ! neutrophillic cytoplasm relationship: has_part GO:0000792 ! heterochromatin relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0000053 PATO:0001407 ! has characteristic mononucleate +relationship: RO:0000053 PATO:0040072 ! has characteristic high nuclear/cytoplasmic ratio [Term] id: CL:0000547 @@ -17900,6 +17966,7 @@ synonym: "rubriblast" EXACT [ISBN:0721601464] xref: FMA:83518 is_a: CL:0000764 {is_inferred="true"} ! erythroid lineage cell is_a: CL:0002242 ! nucleate cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000764 ! erythroid lineage cell intersection_of: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule intersection_of: CL:4030046 PR:000001004 ! lacks_plasma_membrane_part CD4 molecule @@ -17912,11 +17979,11 @@ intersection_of: CL:4030046 PR:000001289 ! lacks_plasma_membrane_part membrane-s intersection_of: CL:4030046 PR:000001839 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD5 intersection_of: CL:4030046 PR:000001889 ! lacks_plasma_membrane_part CD14 molecule intersection_of: CL:4030046 PR:000002978 ! lacks_plasma_membrane_part lymphocyte antigen 6G -intersection_of: has_characteristic PATO:0002505 ! nucleated -intersection_of: has_characteristic PATO:0040072 ! high nuclear/cytoplasmic ratio intersection_of: has_part CL:0017503 ! basophilic cytoplasm intersection_of: has_part GO:0005730 ! nucleolus -intersection_of: has_plasma_membrane_part PR:000001945 ! transferrin receptor protein 1 +intersection_of: RO:0000053 PATO:0002505 ! has characteristic nucleated +intersection_of: RO:0000053 PATO:0040072 ! has characteristic high nuclear/cytoplasmic ratio +intersection_of: RO:0002104 PR:000001945 ! has plasma membrane part transferrin receptor protein 1 relationship: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule relationship: CL:4030046 PR:000001004 ! lacks_plasma_membrane_part CD4 molecule relationship: CL:4030046 PR:000001012 ! lacks_plasma_membrane_part integrin alpha-M @@ -17929,11 +17996,11 @@ relationship: CL:4030046 PR:000001839 ! lacks_plasma_membrane_part T-cell surfac relationship: CL:4030046 PR:000001889 ! lacks_plasma_membrane_part CD14 molecule relationship: CL:4030046 PR:000002978 ! lacks_plasma_membrane_part lymphocyte antigen 6G relationship: develops_from CL:0000038 ! erythroid progenitor cell -relationship: has_characteristic PATO:0002505 ! nucleated -relationship: has_characteristic PATO:0040072 ! high nuclear/cytoplasmic ratio relationship: has_part CL:0017503 ! basophilic cytoplasm relationship: has_part GO:0005730 ! nucleolus -relationship: has_plasma_membrane_part PR:000001945 ! transferrin receptor protein 1 +relationship: RO:0000053 PATO:0002505 ! has characteristic nucleated +relationship: RO:0000053 PATO:0040072 ! has characteristic high nuclear/cytoplasmic ratio +relationship: RO:0002104 PR:000001945 ! has plasma membrane part transferrin receptor protein 1 [Term] id: CL:0000549 @@ -17945,13 +18012,14 @@ synonym: "early normoblast" EXACT [ISBN:0721601464] synonym: "prorubricyte" EXACT [ISBN:0721601464] xref: FMA:83505 is_a: CL:0000765 {is_inferred="true"} ! erythroblast +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000765 ! erythroblast intersection_of: has_part CL:0017503 ! basophilic cytoplasm intersection_of: has_part GO:0000792 ! heterochromatin -intersection_of: has_plasma_membrane_part PR:000001945 ! transferrin receptor protein 1 +intersection_of: RO:0002104 PR:000001945 ! has plasma membrane part transferrin receptor protein 1 relationship: has_part CL:0017503 ! basophilic cytoplasm relationship: has_part GO:0000792 ! heterochromatin -relationship: has_plasma_membrane_part PR:000001945 ! transferrin receptor protein 1 +relationship: RO:0002104 PR:000001945 ! has plasma membrane part transferrin receptor protein 1 [Term] id: CL:0000550 @@ -17965,14 +18033,15 @@ synonym: "polychromatophilic normoblast" EXACT [ISBN:0721601464] synonym: "rubricyte" EXACT [ISBN:0721601464] xref: FMA:83506 is_a: CL:0000765 {is_inferred="true"} ! erythroblast +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000765 ! erythroblast intersection_of: has_part CL:0017504 ! polychromatophilic cytoplasm intersection_of: has_part GO:0000792 ! heterochromatin -intersection_of: has_plasma_membrane_part PR:000001945 ! transferrin receptor protein 1 +intersection_of: RO:0002104 PR:000001945 ! has plasma membrane part transferrin receptor protein 1 relationship: develops_from CL:0000549 ! basophilic erythroblast relationship: has_part CL:0017504 ! polychromatophilic cytoplasm relationship: has_part GO:0000792 ! heterochromatin -relationship: has_plasma_membrane_part PR:000001945 ! transferrin receptor protein 1 +relationship: RO:0002104 PR:000001945 ! has plasma membrane part transferrin receptor protein 1 [Term] id: CL:0000552 @@ -18070,8 +18139,8 @@ xref: FMA:83555 is_a: CL:0000763 {is_inferred="true"} ! myeloid cell disjoint_from: CL:0000764 ! erythroid lineage cell relationship: develops_from CL:0000553 ! megakaryocyte progenitor cell -relationship: has_characteristic PATO:0001393 ! euploid relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0000053 PATO:0001393 ! has characteristic euploid [Term] id: CL:0000557 @@ -18091,6 +18160,7 @@ is_a: CL:0000763 ! myeloid cell is_a: CL:0001012 ! CD7-negative lymphoid progenitor OR granulocyte monocyte progenitor is_a: CL:0011026 ! progenitor cell is_a: CL:1001610 ! bone marrow hematopoietic cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0002032 ! hematopoietic oligopotent progenitor cell intersection_of: capable_of GO:0030225 ! macrophage differentiation intersection_of: capable_of GO:0030851 ! granulocyte differentiation @@ -18098,17 +18168,17 @@ intersection_of: CL:4030045 PR:000007857 ! lacks_part erythroid transcription fa intersection_of: CL:4030045 PR:000007858 ! lacks_part endothelial transcription factor GATA-2 intersection_of: has_part PR:000001944 ! transcription factor PU.1 intersection_of: has_part PR:000005307 ! CCAAT/enhancer-binding protein alpha -intersection_of: has_plasma_membrane_part PR:000001865 ! interleukin-3 receptor class 2 alpha chain intersection_of: part_of UBERON:0002371 ! bone marrow +intersection_of: RO:0002104 PR:000001865 ! has plasma membrane part interleukin-3 receptor class 2 alpha chain relationship: capable_of GO:0030225 ! macrophage differentiation relationship: capable_of GO:0030851 ! granulocyte differentiation relationship: CL:4030045 PR:000007857 ! lacks_part erythroid transcription factor relationship: CL:4030045 PR:000007858 ! lacks_part endothelial transcription factor GATA-2 relationship: has_part PR:000001944 ! transcription factor PU.1 relationship: has_part PR:000005307 ! CCAAT/enhancer-binding protein alpha -relationship: has_plasma_membrane_part PR:000001865 ! interleukin-3 receptor class 2 alpha chain relationship: part_of UBERON:0002371 ! bone marrow relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:000001865 ! has plasma membrane part interleukin-3 receptor class 2 alpha chain [Term] id: CL:0000558 @@ -18120,6 +18190,7 @@ xref: BTO:0001173 xref: CALOHA:TS-0864 xref: MESH:D012156 is_a: CL:0000764 {is_inferred="true"} ! erythroid lineage cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000764 ! erythroid lineage cell intersection_of: capable_of GO:0071971 ! extracellular exosome assembly intersection_of: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule @@ -18133,7 +18204,7 @@ intersection_of: CL:4030046 PR:000001289 ! lacks_plasma_membrane_part membrane-s intersection_of: CL:4030046 PR:000001839 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD5 intersection_of: CL:4030046 PR:000001889 ! lacks_plasma_membrane_part CD14 molecule intersection_of: CL:4030046 PR:000002978 ! lacks_plasma_membrane_part lymphocyte antigen 6G -intersection_of: has_plasma_membrane_part PR:000001945 ! transferrin receptor protein 1 +intersection_of: RO:0002104 PR:000001945 ! has plasma membrane part transferrin receptor protein 1 relationship: capable_of GO:0071971 ! extracellular exosome assembly relationship: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule relationship: CL:4030046 PR:000001004 ! lacks_plasma_membrane_part CD4 molecule @@ -18147,7 +18218,7 @@ relationship: CL:4030046 PR:000001839 ! lacks_plasma_membrane_part T-cell surfac relationship: CL:4030046 PR:000001889 ! lacks_plasma_membrane_part CD14 molecule relationship: CL:4030046 PR:000002978 ! lacks_plasma_membrane_part lymphocyte antigen 6G relationship: develops_from CL:0000552 ! orthochromatic erythroblast -relationship: has_plasma_membrane_part PR:000001945 ! transferrin receptor protein 1 +relationship: RO:0002104 PR:000001945 ! has plasma membrane part transferrin receptor protein 1 [Term] id: CL:0000559 @@ -18160,16 +18231,17 @@ xref: BTO:0004657 xref: FMA:83551 is_a: CL:0000763 ! myeloid cell is_a: CL:0002194 {is_inferred="true"} ! monopoietic cell +is_a: PR:000050567 ! obsolete protein-containing material entity is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: CL:0002194 ! monopoietic cell intersection_of: capable_of GO:0030224 ! monocyte differentiation intersection_of: has_part GO:0042582 ! azurophil granule -intersection_of: has_plasma_membrane_part PR:000001012 ! integrin alpha-M +intersection_of: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M relationship: capable_of GO:0030224 ! monocyte differentiation relationship: develops_from CL:0000040 ! monoblast relationship: has_part GO:0042582 ! azurophil granule -relationship: has_plasma_membrane_part PR:000001012 ! integrin alpha-M relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M [Term] id: CL:0000561 @@ -18191,7 +18263,7 @@ relationship: in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000966 ! retina relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: synapsed_to CL:0000740 ! retinal ganglion cell +relationship: RO:0002120 CL:0000740 ! synapsed to retinal ganglion cell [Term] id: CL:0000562 @@ -18202,9 +18274,9 @@ synonym: "red blood cell" BROAD [] is_a: CL:0000232 {is_inferred="true"} ! erythrocyte is_a: CL:0002242 ! nucleate cell intersection_of: CL:0000232 ! erythrocyte -intersection_of: has_characteristic PATO:0002505 ! nucleated +intersection_of: RO:0000053 PATO:0002505 ! has characteristic nucleated relationship: develops_from CL:0002421 ! nucleated reticulocyte -relationship: has_characteristic PATO:0002505 ! nucleated +relationship: RO:0000053 PATO:0002505 ! has characteristic nucleated [Term] id: CL:0000566 @@ -18215,14 +18287,15 @@ synonym: "angioblast" EXACT [] synonym: "chondroplast" EXACT [] is_a: CL:0000134 {is_inferred="true"} ! mesenchymal stem cell is_a: CL:0011026 ! progenitor cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000134 ! mesenchymal stem cell -intersection_of: has_plasma_membrane_part PR:000001444 ! cadherin-5 -intersection_of: has_plasma_membrane_part PR:000002112 ! vascular endothelial growth factor receptor 2 -intersection_of: has_plasma_membrane_part PR:000016043 ! T-cell acute lymphocytic leukemia protein 1 +intersection_of: RO:0002104 PR:000001444 ! has plasma membrane part cadherin-5 +intersection_of: RO:0002104 PR:000002112 ! has plasma membrane part vascular endothelial growth factor receptor 2 +intersection_of: RO:0002104 PR:000016043 ! has plasma membrane part T-cell acute lymphocytic leukemia protein 1 relationship: develops_from CL:0000134 ! mesenchymal stem cell -relationship: has_plasma_membrane_part PR:000001444 ! cadherin-5 -relationship: has_plasma_membrane_part PR:000002112 ! vascular endothelial growth factor receptor 2 -relationship: has_plasma_membrane_part PR:000016043 ! T-cell acute lymphocytic leukemia protein 1 +relationship: RO:0002104 PR:000001444 ! has plasma membrane part cadherin-5 +relationship: RO:0002104 PR:000002112 ! has plasma membrane part vascular endothelial growth factor receptor 2 +relationship: RO:0002104 PR:000016043 ! has plasma membrane part T-cell acute lymphocytic leukemia protein 1 [Term] id: CL:0000568 @@ -18259,19 +18332,20 @@ xref: SCTID:176770005 is_a: CL:0000443 {is_inferred="true"} ! calcitonin secreting cell is_a: CL:0000458 ! serotonin secreting cell is_a: CL:0000710 {is_inferred="true"} ! neurecto-epithelial cell +is_a: PR:000050567 ! obsolete protein-containing material entity is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: CL:0000710 ! neurecto-epithelial cell intersection_of: capable_of GO:0001820 ! serotonin secretion intersection_of: capable_of GO:0014046 ! dopamine secretion intersection_of: capable_of GO:0036161 ! calcitonin secretion -intersection_of: has_plasma_membrane_part PR:000001024 ! neural cell adhesion molecule 1 +intersection_of: RO:0002104 PR:000001024 ! has plasma membrane part neural cell adhesion molecule 1 relationship: capable_of GO:0001820 ! serotonin secretion relationship: capable_of GO:0014046 ! dopamine secretion relationship: capable_of GO:0036161 ! calcitonin secretion relationship: develops_from CL:0000333 ! migratory neural crest cell -relationship: has_plasma_membrane_part PR:000001024 ! neural cell adhesion molecule 1 relationship: part_of UBERON:0001747 ! parenchyma of thyroid gland +relationship: RO:0002104 PR:000001024 ! has plasma membrane part neural cell adhesion molecule 1 [Term] id: CL:0000573 @@ -18292,6 +18366,7 @@ id: CL:0000574 name: erythrophore def: "A pigment cell derived from the neural crest. Contains pteridine and/or carotenoid pigments in structures called pterinosomes or erythrosomes. This gives an orange to red appearance." [SANBI:mhl] is_a: CL:0000147 ! pigment cell +is_a: CL:0000255 ! eukaryotic cell is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from CL:0005004 ! pigment erythroblast @@ -18334,13 +18409,13 @@ intersection_of: CL:0000766 ! myeloid leukocyte intersection_of: capable_of GO:0030225 ! macrophage differentiation intersection_of: capable_of GO:0030316 ! osteoclast differentiation intersection_of: capable_of GO:0043011 ! myeloid dendritic cell differentiation -intersection_of: has_characteristic PATO:0001407 ! mononucleate +intersection_of: RO:0000053 PATO:0001407 ! has characteristic mononucleate relationship: capable_of GO:0030225 ! macrophage differentiation relationship: capable_of GO:0030316 ! osteoclast differentiation relationship: capable_of GO:0043011 ! myeloid dendritic cell differentiation relationship: develops_from CL:0000559 ! promonocyte -relationship: has_characteristic PATO:0001407 ! mononucleate relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0000053 PATO:0001407 ! has characteristic mononucleate [Term] id: CL:0000586 @@ -18384,9 +18459,9 @@ synonym: "red blood cell" BROAD [] is_a: CL:0000225 ! anucleate cell is_a: CL:0000232 {is_inferred="true"} ! erythrocyte intersection_of: CL:0000232 ! erythrocyte -intersection_of: has_characteristic PATO:0001405 ! anucleate +intersection_of: RO:0000053 PATO:0001405 ! has characteristic anucleate relationship: develops_from CL:0002422 ! enucleated reticulocyte -relationship: has_characteristic PATO:0001405 ! anucleate +relationship: RO:0000053 PATO:0001405 ! has characteristic anucleate [Term] id: CL:0000598 @@ -18402,8 +18477,8 @@ xref: FMA:86775 xref: NIFSTD:sao862606388 is_a: CL:0000104 ! multipolar neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_characteristic PATO:0070015 ! pyramidal family morphology -relationship: has_characteristic PATO:0070015 ! pyramidal family morphology +intersection_of: RO:0000053 PATO:0070015 ! has characteristic pyramidal family morphology +relationship: RO:0000053 PATO:0070015 ! has characteristic pyramidal family morphology [Term] id: CL:0000604 @@ -18450,6 +18525,7 @@ subset: cellxgene_subset synonym: "acinic cell" EXACT [] synonym: "acinous cell" EXACT [] xref: FMA:83625 +xref: https://cellxgene.cziscience.com/cellguide/CL_0000622 xref: MESH:D061354 is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0000154 ! protein secreting cell @@ -18499,14 +18575,14 @@ is_a: CL:0000120 ! granule cell is_a: CL:0012001 ! neuron of the forebrain is_a: CL:1001434 ! olfactory bulb interneuron intersection_of: CL:0000120 ! granule cell -intersection_of: has_soma_location UBERON:0005378 ! olfactory bulb granule cell layer -relationship: has_soma_location UBERON:0005378 ! olfactory bulb granule cell layer -relationship: involved_in_regulation_of GO:0007608 ! sensory perception of smell +intersection_of: RO:0002100 UBERON:0005378 ! has soma location olfactory bulb granule cell layer relationship: part_of RO:0002577 ! system +relationship: RO:0002100 UBERON:0005378 ! has soma location olfactory bulb granule cell layer +relationship: RO:0002120 CL:1001502 ! synapsed to mitral cell +relationship: RO:0002120 CL:1001503 ! synapsed to olfactory bulb tufted cell +relationship: RO:0002428 GO:0007608 ! involved in regulation of sensory perception of smell relationship: synapsed_by CL:1001502 ! mitral cell relationship: synapsed_by CL:1001503 ! olfactory bulb tufted cell -relationship: synapsed_to CL:1001502 ! mitral cell -relationship: synapsed_to CL:1001503 ! olfactory bulb tufted cell [Term] id: CL:0000627 @@ -18541,13 +18617,14 @@ xref: CALOHA:TS-0452 xref: FMA:67763 is_a: CL:0000057 ! fibroblast is_a: CL:0000327 ! extracellular matrix secreting cell +is_a: PR:000050567 ! obsolete protein-containing material entity is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: CL:0002320 ! connective tissue cell -intersection_of: has_plasma_membrane_part PR:000007939 ! glial fibrillary acidic protein intersection_of: part_of UBERON:0002107 ! liver -relationship: has_plasma_membrane_part PR:000007939 ! glial fibrillary acidic protein +intersection_of: RO:0002104 PR:000007939 ! has plasma membrane part glial fibrillary acidic protein relationship: part_of UBERON:0002107 ! liver relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:000007939 ! has plasma membrane part glial fibrillary acidic protein [Term] id: CL:0000636 @@ -18685,6 +18762,7 @@ synonym: "kidney podocyte" EXACT [] synonym: "renal podocyte" EXACT [] xref: BTO:0002295 xref: FMA:70967 +xref: https://cellxgene.cziscience.com/cellguide/CL_0000653 is_a: CL:0002522 ! renal filtration cell is_a: CL:1000450 ! epithelial cell of glomerular capsule intersection_of: CL:0000066 ! epithelial cell @@ -18729,11 +18807,12 @@ xref: BTO:0001115 xref: CALOHA:TS-2194 xref: FMA:72292 is_a: CL:0000017 ! spermatocyte +is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000017 ! spermatocyte intersection_of: capable_of GO:0007140 ! male meiotic nuclear division -intersection_of: has_characteristic PATO:0001394 ! diploid +intersection_of: RO:0000053 PATO:0001394 ! has characteristic diploid relationship: capable_of GO:0007140 ! male meiotic nuclear division -relationship: has_characteristic PATO:0001394 ! diploid +relationship: RO:0000053 PATO:0001394 ! has characteristic diploid [Term] id: CL:0000657 @@ -18743,13 +18822,14 @@ xref: BTO:0000709 xref: CALOHA:TS-2195 xref: FMA:72293 is_a: CL:0000017 ! spermatocyte +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0000413 ! haploid cell intersection_of: CL:0000017 ! spermatocyte intersection_of: capable_of GO:0007142 ! male meiosis II -intersection_of: has_characteristic PATO:0001375 ! haploid +intersection_of: RO:0000053 PATO:0001375 ! has characteristic haploid relationship: capable_of GO:0007142 ! male meiosis II relationship: develops_from CL:0000656 ! primary spermatocyte -relationship: has_characteristic PATO:0001375 ! haploid +relationship: RO:0000053 PATO:0001375 ! has characteristic haploid [Term] id: CL:0000666 @@ -18757,10 +18837,11 @@ name: fenestrated endothelial cell def: "An endothelial cell that has small pores, or fenestrations, which allow for the efficient exchange of substances between the blood and surrounding tissues." [DOI:10.1007/978-3-211-99390-3_133] subset: cellxgene_subset synonym: "window cell" EXACT [] +xref: https://cellxgene.cziscience.com/cellguide/CL_0000666 is_a: CL:0000115 ! endothelial cell intersection_of: CL:0000115 ! endothelial cell -intersection_of: has_characteristic PATO:0002064 ! fenestrated -relationship: has_characteristic PATO:0002064 ! fenestrated +intersection_of: RO:0000053 PATO:0002064 ! has characteristic fenestrated +relationship: RO:0000053 PATO:0002064 ! has characteristic fenestrated [Term] id: CL:0000667 @@ -18833,6 +18914,7 @@ name: muscle precursor cell def: "A non-terminally differentiated cell that is capable of developing into a muscle cell." [GOC:add] subset: cellxgene_subset is_a: CL:0000055 ! non-terminally differentiated cell +is_a: CL:0000255 ! eukaryotic cell is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: CL:0011115 ! precursor cell intersection_of: develops_into CL:0000187 ! muscle cell @@ -18849,6 +18931,18 @@ synonym: "forebrain radial glial cell" NARROW [] is_a: CL:0000125 ! glial cell relationship: develops_from CL:0000710 ! neurecto-epithelial cell +[Term] +id: CL:0000686 +name: cerebrospinal fluid secreting cell +def: "A columnar/cuboidal epithelial cell that secretes cerebrospinal fluid." [GOC:tfm] +is_a: CL:0000151 {is_inferred="true"} ! secretory cell +is_a: CL:0000710 ! neurecto-epithelial cell +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: CL:0000151 ! secretory cell +intersection_of: capable_of GO:0033326 ! cerebrospinal fluid secretion +relationship: capable_of GO:0033326 ! cerebrospinal fluid secretion +relationship: develops_from CL:0000333 ! migratory neural crest cell + [Term] id: CL:0000691 name: stellate interneuron @@ -18857,8 +18951,8 @@ subset: BDS_subset is_a: CL:0000099 ! interneuron is_a: CL:0000104 ! multipolar neuron intersection_of: CL:0000099 ! interneuron -intersection_of: has_characteristic PATO:0070010 ! stellate morphology -relationship: has_characteristic PATO:0070010 ! stellate morphology +intersection_of: RO:0000053 PATO:0070010 ! has characteristic stellate morphology +relationship: RO:0000053 PATO:0070010 ! has characteristic stellate morphology [Term] id: CL:0000696 @@ -18868,6 +18962,7 @@ subset: cellxgene_subset synonym: "type F enteroendocrine cell" EXACT [] xref: FMA:62938 xref: FMA:83409 +xref: https://cellxgene.cziscience.com/cellguide/CL_0000696 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0000167 ! peptide hormone secreting cell @@ -18896,18 +18991,20 @@ is_a: CL:0000630 ! supporting cell [Term] id: CL:0000706 name: choroid plexus epithelial cell -def: "Specialized ependymal cell that produces the cerebrospinal fluid from the blood and secretes it into the lumen of the brain and spinal chord." [GOC:add, GOC:tfm, JB:jb, PMID:9550134] +def: "A specialized ependymal cell that is part of the choroid plexus epithelium, responsible for producing cerebrospinal fluid (CSF) by selectively filtering and modifying blood plasma components before secreting it into the brain and spinal cord. This cell is characterized by a brush border on its apical surface, which enhances the secretion of CSF." [GOC:add, GOC:tfm, JB:jb, PMID:15561411, PMID:9550134] +comment: A choroid plexus epithelial cell possesses non-motile 9+0 cilia. While these cilia can exhibit transient motility during development, they generally do not contribute significantly to the directional flow of cerebrospinal fluid (CSF). Instead, they are primarily involved in sensory functions. {xref="PMID:25729351"} subset: cellxgene_subset subset: human_reference_atlas synonym: "choroid plexus cell" BROAD [DOI:10.1101/2022.10.12.511898] synonym: "epithelial cell of choroid plexus" EXACT [] xref: FMA:70549 is_a: CL:0000065 ! ependymal cell +is_a: CL:0000239 ! brush border epithelial cell is_a: CL:0000627 ! transporting cell -is_a: CL:0002319 ! neural cell intersection_of: CL:0000065 ! ependymal cell -intersection_of: part_of UBERON:0001886 ! choroid plexus -relationship: part_of UBERON:0001886 ! choroid plexus +intersection_of: part_of UBERON:0003911 ! choroid plexus epithelium +relationship: capable_of GO:0033326 ! cerebrospinal fluid secretion +relationship: part_of UBERON:0003911 ! choroid plexus epithelium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2023-08-04T08:48:30Z" xsd:dateTime @@ -18965,6 +19062,7 @@ def: "A cell of a layer of transitional epithelium in the wall of the proximal u subset: cellxgene_subset synonym: "urinary tract transitional epithelial cell" NARROW [] xref: FMA:84127 +xref: https://cellxgene.cziscience.com/cellguide/CL_0000731 is_a: CL:0000244 ! transitional epithelial cell is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: CL:0000244 ! transitional epithelial cell @@ -18980,11 +19078,11 @@ xref: CALOHA:TS-2157 xref: FMA:86936 is_a: CL:0000187 ! muscle cell intersection_of: CL:0000187 ! muscle cell -intersection_of: has_characteristic PATO:0001410 ! striated intersection_of: has_part GO:0030017 ! sarcomere +intersection_of: RO:0000053 PATO:0001410 ! has characteristic striated disjoint_from: CL:0008000 ! non-striated muscle cell -relationship: has_characteristic PATO:0001410 ! striated relationship: has_part GO:0030017 ! sarcomere +relationship: RO:0000053 PATO:0001410 ! has characteristic striated [Term] id: CL:0000738 @@ -19006,13 +19104,13 @@ is_a: CL:0000988 {is_inferred="true"} ! hematopoietic cell is_a: CL:0002242 ! nucleate cell intersection_of: CL:0000988 ! hematopoietic cell intersection_of: capable_of GO:0001667 ! ameboidal-type cell migration -intersection_of: has_characteristic PATO:0002505 ! nucleated +intersection_of: RO:0000053 PATO:0002505 ! has characteristic nucleated relationship: capable_of GO:0001667 ! ameboidal-type cell migration relationship: develops_from CL:0000037 ! hematopoietic stem cell -relationship: has_characteristic PATO:0002505 ! nucleated -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata +relationship: in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0002405 ! immune system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0000053 PATO:0002505 ! has characteristic nucleated [Term] id: CL:0000740 @@ -19029,8 +19127,8 @@ xref: BTO:0001800 xref: FMA:67765 xref: MESH:D012165 is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) -relationship: has_soma_location UBERON:0000966 ! retina relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002100 UBERON:0000966 ! has soma location retina [Term] id: CL:0000745 @@ -19045,8 +19143,8 @@ synonym: "horizontal cell" EXACT [] xref: BTO:0004120 is_a: CL:0000099 ! interneuron relationship: develops_from CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: has_soma_location UBERON:0003902 ! retinal neural layer relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002100 UBERON:0003902 ! has soma location retinal neural layer [Term] id: CL:0000746 @@ -19069,16 +19167,16 @@ xref: MESH:D032383 is_a: CL:0000737 ! striated muscle cell is_a: CL:0002494 ! cardiocyte intersection_of: CL:0000187 ! muscle cell -intersection_of: has_characteristic PATO:0002478 ! transversely striated intersection_of: has_part GO:0030017 ! sarcomere intersection_of: part_of UBERON:0007100 ! primary circulatory organ intersection_of: participates_in GO:0060047 ! heart contraction +intersection_of: RO:0000053 PATO:0002478 ! has characteristic transversely striated relationship: develops_from CL:0000513 ! cardiac muscle myoblast -relationship: has_characteristic PATO:0002478 ! transversely striated relationship: has_part GO:0030017 ! sarcomere relationship: part_of UBERON:0007100 ! primary circulatory organ relationship: participates_in GO:0060047 ! heart contraction relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0000053 PATO:0002478 ! has characteristic transversely striated [Term] id: CL:0000748 @@ -19095,10 +19193,10 @@ is_a: CL:0000679 ! glutamatergic neuron is_a: CL:0008028 ! visual system neuron is_a: CL:0009004 ! retinal cell intersection_of: CL:0000103 ! bipolar neuron -intersection_of: has_soma_location UBERON:0001791 ! inner nuclear layer of retina +intersection_of: RO:0002100 UBERON:0001791 ! has soma location inner nuclear layer of retina relationship: develops_from CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: has_soma_location UBERON:0001791 ! inner nuclear layer of retina relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002100 UBERON:0001791 ! has soma location inner nuclear layer of retina [Term] id: CL:0000752 @@ -19120,10 +19218,10 @@ is_a: CL:0000226 ! single nucleate cell is_a: CL:0000763 {is_inferred="true"} ! myeloid cell intersection_of: CL:0000763 ! myeloid cell intersection_of: capable_of GO:0007596 ! blood coagulation -intersection_of: has_characteristic PATO:0001407 ! mononucleate +intersection_of: RO:0000053 PATO:0001407 ! has characteristic mononucleate relationship: capable_of GO:0007596 ! blood coagulation relationship: develops_from CL:0000828 ! thromboblast -relationship: has_characteristic PATO:0001407 ! mononucleate +relationship: RO:0000053 PATO:0001407 ! has characteristic mononucleate [Term] id: CL:0000763 @@ -19133,6 +19231,7 @@ subset: cellxgene_subset xref: BTO:0001441 xref: CALOHA:TS-0647 xref: MESH:D022423 +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0000988 {is_inferred="true"} ! hematopoietic cell intersection_of: CL:0000988 ! hematopoietic cell intersection_of: develops_from CL:0000049 ! common myeloid progenitor @@ -19232,11 +19331,11 @@ xref: FMA:62860 xref: MESH:D009504 is_a: CL:0000094 {is_inferred="true"} ! granulocyte intersection_of: CL:0000094 ! granulocyte -intersection_of: has_plasma_membrane_part PR:000001479 ! low affinity immunoglobulin gamma Fc region receptor II -intersection_of: has_plasma_membrane_part PR:000001879 ! leukosialin -relationship: has_plasma_membrane_part PR:000001479 ! low affinity immunoglobulin gamma Fc region receptor II -relationship: has_plasma_membrane_part PR:000001879 ! leukosialin +intersection_of: RO:0002104 PR:000001479 ! has plasma membrane part low affinity immunoglobulin gamma Fc region receptor II +intersection_of: RO:0002104 PR:000001879 ! has plasma membrane part leukosialin relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:000001479 ! has plasma membrane part low affinity immunoglobulin gamma Fc region receptor II +relationship: RO:0002104 PR:000001879 ! has plasma membrane part leukosialin [Term] id: CL:0000777 @@ -19260,21 +19359,22 @@ comment: Morphology: mononuclear, highly vesicular. is_a: CL:0000092 {is_inferred="true"} ! osteoclast is_a: CL:0000113 ! mononuclear phagocyte intersection_of: CL:0000092 ! osteoclast -intersection_of: has_characteristic PATO:0001407 ! mononucleate -relationship: has_characteristic PATO:0001407 ! mononucleate +intersection_of: RO:0000053 PATO:0001407 ! has characteristic mononucleate +relationship: RO:0000053 PATO:0001407 ! has characteristic mononucleate [Term] id: CL:0000779 name: multinuclear osteoclast -def: "A specialized multinuclear osteoclast associated with the absorption and removal of bone." [GOC:add, PMID:12713016, PMID:9415452] +def: "A specialized multinuclear osteoclast, forming a syncytium through the fusion of mononuclear precursor cells, associated with the absorption and removal of bone." [GOC:add, PMID:12713016, PMID:29379067, PMID:38903088, PMID:9415452] comment: Morphology: multinucleated, highly vesicular. synonym: "multinucleated osteoclast" EXACT [] is_a: CL:0000092 {is_inferred="true"} ! osteoclast is_a: CL:0000783 ! multinucleated phagocyte +is_a: CL:4052002 ! syncytial cell intersection_of: CL:0000092 ! osteoclast -intersection_of: has_characteristic PATO:0001908 ! multinucleate +intersection_of: RO:0000053 PATO:0001908 ! has characteristic multinucleate relationship: develops_from CL:0000778 ! mononuclear osteoclast -relationship: has_characteristic PATO:0001908 ! multinucleate +relationship: RO:0000053 PATO:0001908 ! has characteristic multinucleate [Term] id: CL:0000780 @@ -19285,9 +19385,9 @@ synonym: "multinucleated odontoclast" EXACT [] is_a: CL:0000588 {is_inferred="true"} ! odontoclast is_a: CL:0000779 ! multinuclear osteoclast intersection_of: CL:0000588 ! odontoclast -intersection_of: has_characteristic PATO:0001908 ! multinucleate +intersection_of: RO:0000053 PATO:0001908 ! has characteristic multinucleate relationship: develops_from CL:0000781 ! mononuclear odontoclast -relationship: has_characteristic PATO:0001908 ! multinucleate +relationship: RO:0000053 PATO:0001908 ! has characteristic multinucleate [Term] id: CL:0000781 @@ -19297,8 +19397,8 @@ comment: Morphology: Mononuclear, highly vesicular; location: roots of deciduous is_a: CL:0000588 {is_inferred="true"} ! odontoclast is_a: CL:0000778 {is_inferred="true"} ! mononuclear osteoclast intersection_of: CL:0000588 ! odontoclast -intersection_of: has_characteristic PATO:0001407 ! mononucleate -relationship: has_characteristic PATO:0001407 ! mononucleate +intersection_of: RO:0000053 PATO:0001407 ! has characteristic mononucleate +relationship: RO:0000053 PATO:0001407 ! has characteristic mononucleate [Term] id: CL:0000782 @@ -19326,8 +19426,8 @@ def: "A phagocyte formed by the fusion of mononuclear phagocytes." [GOC:add, GOC is_a: CL:0000228 ! multinucleate cell is_a: CL:0000518 {is_inferred="true"} ! phagocyte (sensu Vertebrata) intersection_of: CL:0000518 ! phagocyte (sensu Vertebrata) -intersection_of: has_characteristic PATO:0001908 ! multinucleate -relationship: has_characteristic PATO:0001908 ! multinucleate +intersection_of: RO:0000053 PATO:0001908 ! has characteristic multinucleate +relationship: RO:0000053 PATO:0001908 ! has characteristic multinucleate [Term] id: CL:0000785 @@ -19370,21 +19470,22 @@ xref: BTO:0000392 xref: FMA:70574 xref: MESH:D010950 is_a: CL:0000946 {is_inferred="true"} ! antibody secreting cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000946 ! antibody secreting cell intersection_of: CL:4030046 GO:0019814 ! lacks_plasma_membrane_part immunoglobulin complex intersection_of: CL:4030046 GO:0042613 ! lacks_plasma_membrane_part MHC class II protein complex intersection_of: CL:4030046 PR:000001289 ! lacks_plasma_membrane_part membrane-spanning 4-domains subfamily A member 1 intersection_of: has_part CL:0017508 ! cartwheel heterochromatin intersection_of: has_part GO:0005794 ! Golgi apparatus -intersection_of: has_plasma_membrane_part PR:000001935 ! syndecan-1 +intersection_of: RO:0002104 PR:000001935 ! has plasma membrane part syndecan-1 relationship: CL:4030046 GO:0019814 ! lacks_plasma_membrane_part immunoglobulin complex relationship: CL:4030046 GO:0042613 ! lacks_plasma_membrane_part MHC class II protein complex relationship: CL:4030046 PR:000001289 ! lacks_plasma_membrane_part membrane-spanning 4-domains subfamily A member 1 relationship: develops_from CL:0000980 ! plasmablast relationship: has_part CL:0017508 ! cartwheel heterochromatin relationship: has_part GO:0005794 ! Golgi apparatus -relationship: has_plasma_membrane_part PR:000001935 ! syndecan-1 relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:000001935 ! has plasma membrane part syndecan-1 [Term] id: CL:0000787 @@ -19399,14 +19500,14 @@ synonym: "memory B-lymphocyte" EXACT [] is_a: CL:0000785 {is_inferred="true"} ! mature B cell intersection_of: CL:0000785 ! mature B cell intersection_of: CL:4030046 PR:000001935 ! lacks_plasma_membrane_part syndecan-1 -intersection_of: has_plasma_membrane_part GO:0042613 ! MHC class II protein complex -intersection_of: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 intersection_of: output_of GO:0002344 ! B cell affinity maturation +intersection_of: RO:0002104 GO:0042613 ! has plasma membrane part MHC class II protein complex +intersection_of: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 relationship: CL:4030046 PR:000001935 ! lacks_plasma_membrane_part syndecan-1 -relationship: has_plasma_membrane_part GO:0042613 ! MHC class II protein complex -relationship: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 relationship: output_of GO:0002344 ! B cell affinity maturation relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 GO:0042613 ! has plasma membrane part MHC class II protein complex +relationship: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 [Term] id: CL:0000788 @@ -19422,15 +19523,15 @@ is_a: CL:0000785 {is_inferred="true"} ! mature B cell intersection_of: CL:0000785 ! mature B cell intersection_of: CL:4030044 GO:0002344 ! has_not_completed B cell affinity maturation intersection_of: CL:4030046 PR:000001963 ! lacks_plasma_membrane_part CD27 molecule -intersection_of: has_plasma_membrane_part GO:0071738 ! IgD immunoglobulin complex -intersection_of: has_plasma_membrane_part GO:0071753 ! IgM immunoglobulin complex -intersection_of: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 +intersection_of: RO:0002104 GO:0071738 ! has plasma membrane part IgD immunoglobulin complex +intersection_of: RO:0002104 GO:0071753 ! has plasma membrane part IgM immunoglobulin complex +intersection_of: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 relationship: CL:4030044 GO:0002344 ! has_not_completed B cell affinity maturation relationship: CL:4030046 PR:000001963 ! lacks_plasma_membrane_part CD27 molecule -relationship: has_plasma_membrane_part GO:0071738 ! IgD immunoglobulin complex -relationship: has_plasma_membrane_part GO:0071753 ! IgM immunoglobulin complex -relationship: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 GO:0071738 ! has plasma membrane part IgD immunoglobulin complex +relationship: RO:0002104 GO:0071753 ! has plasma membrane part IgM immunoglobulin complex +relationship: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 [Term] id: CL:0000816 @@ -19448,14 +19549,14 @@ is_a: CL:0001201 ! B cell, CD19-positive intersection_of: CL:0001201 ! B cell, CD19-positive intersection_of: CL:4030044 GO:0045190 ! has_not_completed isotype switching intersection_of: CL:4030046 GO:0071738 ! lacks_plasma_membrane_part IgD immunoglobulin complex -intersection_of: has_plasma_membrane_part GO:0071753 ! IgM immunoglobulin complex -intersection_of: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 +intersection_of: RO:0002104 GO:0071753 ! has plasma membrane part IgM immunoglobulin complex +intersection_of: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 relationship: CL:4030044 GO:0045190 ! has_not_completed isotype switching relationship: CL:4030046 GO:0071738 ! lacks_plasma_membrane_part IgD immunoglobulin complex relationship: develops_from CL:0000954 ! small pre-B-II cell -relationship: has_plasma_membrane_part GO:0071753 ! IgM immunoglobulin complex -relationship: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 GO:0071753 ! has plasma membrane part IgM immunoglobulin complex +relationship: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 [Term] id: CL:0000817 @@ -19469,11 +19570,11 @@ xref: CALOHA:TS-0819 is_a: CL:0001201 {is_inferred="true"} ! B cell, CD19-positive intersection_of: CL:0001201 ! B cell, CD19-positive intersection_of: CL:4030046 GO:0071753 ! lacks_plasma_membrane_part IgM immunoglobulin complex -intersection_of: has_plasma_membrane_part PR:000001898 ! neprilysin +intersection_of: RO:0002104 PR:000001898 ! has plasma membrane part neprilysin disjoint_from: CL:0000826 ! pro-B cell relationship: CL:4030046 GO:0071753 ! lacks_plasma_membrane_part IgM immunoglobulin complex -relationship: has_plasma_membrane_part PR:000001898 ! neprilysin relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:000001898 ! has plasma membrane part neprilysin [Term] id: CL:0000818 @@ -19492,17 +19593,17 @@ synonym: "transitional stage B-lymphocyte" EXACT [] is_a: CL:0001201 {is_inferred="true"} ! B cell, CD19-positive intersection_of: CL:0001201 ! B cell, CD19-positive intersection_of: CL:4030044 GO:0002335 ! has_not_completed mature B cell differentiation -intersection_of: has_high_plasma_membrane_amount PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -intersection_of: has_high_plasma_membrane_amount PR:000001932 ! signal transducer CD24 -intersection_of: has_plasma_membrane_part GO:0071753 ! IgM immunoglobulin complex -intersection_of: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 +intersection_of: RO:0002104 GO:0071753 ! has plasma membrane part IgM immunoglobulin complex +intersection_of: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 +intersection_of: RO:0015015 PR:000001408 ! has high plasma membrane amount ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +intersection_of: RO:0015015 PR:000001932 ! has high plasma membrane amount signal transducer CD24 relationship: CL:4030044 GO:0002335 ! has_not_completed mature B cell differentiation relationship: develops_from CL:0000816 ! immature B cell -relationship: has_high_plasma_membrane_amount PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -relationship: has_high_plasma_membrane_amount PR:000001932 ! signal transducer CD24 -relationship: has_plasma_membrane_part GO:0071753 ! IgM immunoglobulin complex -relationship: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 GO:0071753 ! has plasma membrane part IgM immunoglobulin complex +relationship: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 +relationship: RO:0015015 PR:000001408 ! has high plasma membrane amount ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +relationship: RO:0015015 PR:000001932 ! has high plasma membrane amount signal transducer CD24 [Term] id: CL:0000819 @@ -19522,15 +19623,15 @@ synonym: "B1 cell" EXACT [] is_a: CL:0000785 {is_inferred="true"} ! mature B cell intersection_of: CL:0000785 ! mature B cell intersection_of: capable_of GO:0045087 ! innate immune response -intersection_of: has_high_plasma_membrane_amount GO:0071753 ! IgM immunoglobulin complex -intersection_of: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -intersection_of: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 -intersection_of: has_plasma_membrane_part PR:000001879 ! leukosialin +intersection_of: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +intersection_of: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 +intersection_of: RO:0002104 PR:000001879 ! has plasma membrane part leukosialin +intersection_of: RO:0015015 GO:0071753 ! has high plasma membrane amount IgM immunoglobulin complex relationship: capable_of GO:0045087 ! innate immune response -relationship: has_high_plasma_membrane_amount GO:0071753 ! IgM immunoglobulin complex -relationship: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -relationship: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 -relationship: has_plasma_membrane_part PR:000001879 ! leukosialin +relationship: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +relationship: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 +relationship: RO:0002104 PR:000001879 ! has plasma membrane part leukosialin +relationship: RO:0015015 GO:0071753 ! has high plasma membrane amount IgM immunoglobulin complex [Term] id: CL:0000820 @@ -19550,8 +19651,8 @@ synonym: "CD5+ B1 cell" EXACT [] synonym: "CD5-positive B1 cell" EXACT [] is_a: CL:0000819 {is_inferred="true"} ! B-1 B cell intersection_of: CL:0000819 ! B-1 B cell -intersection_of: has_plasma_membrane_part PR:000001839 ! T-cell surface glycoprotein CD5 -relationship: has_plasma_membrane_part PR:000001839 ! T-cell surface glycoprotein CD5 +intersection_of: RO:0002104 PR:000001839 ! has plasma membrane part T-cell surface glycoprotein CD5 +relationship: RO:0002104 PR:000001839 ! has plasma membrane part T-cell surface glycoprotein CD5 [Term] id: CL:0000821 @@ -19589,9 +19690,9 @@ synonym: "B2 cell" EXACT [] is_a: CL:0000785 {is_inferred="true"} ! mature B cell intersection_of: CL:0000785 ! mature B cell intersection_of: CL:4030046 PR:000001879 ! lacks_plasma_membrane_part leukosialin -intersection_of: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 +intersection_of: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 relationship: CL:4030046 PR:000001879 ! lacks_plasma_membrane_part leukosialin -relationship: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 +relationship: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 [Term] id: CL:0000823 @@ -19604,10 +19705,10 @@ synonym: "p-NK" RELATED [PMID:12457618] is_a: CL:0000623 ! natural killer cell is_a: CL:0001082 ! immature innate lymphoid cell intersection_of: CL:0000623 ! natural killer cell -intersection_of: has_characteristic PATO:0001501 ! immature +intersection_of: RO:0000053 PATO:0001501 ! has characteristic immature disjoint_from: CL:0000937 ! pre-natural killer cell relationship: develops_from CL:0000937 ! pre-natural killer cell -relationship: has_characteristic PATO:0001501 ! immature +relationship: RO:0000053 PATO:0001501 ! has characteristic immature [Term] id: CL:0000825 @@ -19620,20 +19721,21 @@ synonym: "null cell" RELATED [PMID:11532393] synonym: "preNK cell" RELATED [PMID:11532393] synonym: "pro-natural killer cell" EXACT [] is_a: CL:0000838 {is_inferred="true"} ! lymphoid lineage restricted progenitor cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000838 ! lymphoid lineage restricted progenitor cell intersection_of: CL:4030046 PR:000001874 ! lacks_plasma_membrane_part KLRB1-like protein intersection_of: CL:4030046 PR:000002065 ! lacks_plasma_membrane_part mast/stem cell growth factor receptor -intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule -intersection_of: has_plasma_membrane_part PR:000001015 ! receptor-type tyrosine-protein phosphatase C isoform CD45RA -intersection_of: has_plasma_membrane_part PR:000001381 ! interleukin-2 receptor subunit beta -intersection_of: has_plasma_membrane_part PR:000001898 ! neprilysin +intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +intersection_of: RO:0002104 PR:000001015 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RA +intersection_of: RO:0002104 PR:000001381 ! has plasma membrane part interleukin-2 receptor subunit beta +intersection_of: RO:0002104 PR:000001898 ! has plasma membrane part neprilysin relationship: CL:4030046 PR:000001874 ! lacks_plasma_membrane_part KLRB1-like protein relationship: CL:4030046 PR:000002065 ! lacks_plasma_membrane_part mast/stem cell growth factor receptor relationship: develops_from CL:0000051 ! common lymphoid progenitor -relationship: has_plasma_membrane_part PR:000001003 ! CD34 molecule -relationship: has_plasma_membrane_part PR:000001015 ! receptor-type tyrosine-protein phosphatase C isoform CD45RA -relationship: has_plasma_membrane_part PR:000001381 ! interleukin-2 receptor subunit beta -relationship: has_plasma_membrane_part PR:000001898 ! neprilysin +relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +relationship: RO:0002104 PR:000001015 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RA +relationship: RO:0002104 PR:000001381 ! has plasma membrane part interleukin-2 receptor subunit beta +relationship: RO:0002104 PR:000001898 ! has plasma membrane part neprilysin [Term] id: CL:0000826 @@ -19653,6 +19755,7 @@ synonym: "progenitor B-cell" EXACT [] synonym: "progenitor B-lymphocyte" EXACT [] xref: BTO:0003104 is_a: CL:0000838 {is_inferred="true"} ! lymphoid lineage restricted progenitor cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000838 ! lymphoid lineage restricted progenitor cell intersection_of: has_part PR:000001903 ! paired box protein PAX-5 intersection_of: has_part PR:000006611 ! DNA nucleotidylexotransferase @@ -19689,10 +19792,10 @@ is_a: CL:0000763 ! myeloid cell is_a: CL:0000839 {is_inferred="true"} ! myeloid lineage restricted progenitor cell intersection_of: CL:0000839 ! myeloid lineage restricted progenitor cell intersection_of: capable_of GO:0002574 ! thrombocyte differentiation -intersection_of: has_characteristic PATO:0001407 ! mononucleate +intersection_of: RO:0000053 PATO:0001407 ! has characteristic mononucleate relationship: capable_of GO:0002574 ! thrombocyte differentiation relationship: develops_from CL:0000050 ! megakaryocyte-erythroid progenitor cell -relationship: has_characteristic PATO:0001407 ! mononucleate +relationship: RO:0000053 PATO:0001407 ! has characteristic mononucleate [Term] id: CL:0000834 @@ -19719,14 +19822,14 @@ is_a: CL:0002191 {is_inferred="true"} ! granulocytopoietic cell is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: CL:0002191 ! granulocytopoietic cell intersection_of: CL:4030045 GO:0042582 ! lacks_part azurophil granule -intersection_of: has_characteristic PATO:0040072 ! high nuclear/cytoplasmic ratio intersection_of: has_part CL:0017503 ! basophilic cytoplasm intersection_of: has_part GO:0000791 ! euchromatin +intersection_of: RO:0000053 PATO:0040072 ! has characteristic high nuclear/cytoplasmic ratio relationship: CL:4030045 GO:0042582 ! lacks_part azurophil granule relationship: develops_from CL:0000557 ! granulocyte monocyte progenitor cell -relationship: has_characteristic PATO:0040072 ! high nuclear/cytoplasmic ratio relationship: has_part CL:0017503 ! basophilic cytoplasm relationship: has_part GO:0000791 ! euchromatin +relationship: RO:0000053 PATO:0040072 ! has characteristic high nuclear/cytoplasmic ratio [Term] id: CL:0000837 @@ -19740,7 +19843,9 @@ synonym: "hemopoietic progenitor cell" EXACT [] synonym: "MPP" EXACT [] xref: BTO:0000725 xref: CALOHA:TS-0448 +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0008001 ! hematopoietic precursor cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000988 ! hematopoietic cell intersection_of: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule intersection_of: CL:4030046 PR:000001004 ! lacks_plasma_membrane_part CD4 molecule @@ -19755,8 +19860,8 @@ intersection_of: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleuki intersection_of: CL:4030046 PR:000001889 ! lacks_plasma_membrane_part CD14 molecule intersection_of: CL:4030046 PR:000002978 ! lacks_plasma_membrane_part lymphocyte antigen 6G intersection_of: CL:4030046 PR:000002981 ! lacks_plasma_membrane_part lymphocyte antigen 76 (mouse) -intersection_of: has_characteristic PATO:0001402 ! multipotent -intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule +intersection_of: RO:0000053 PATO:0001402 ! has characteristic multipotent +intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule disjoint_from: CL:0002032 ! hematopoietic oligopotent progenitor cell relationship: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule relationship: CL:4030046 PR:000001004 ! lacks_plasma_membrane_part CD4 molecule @@ -19772,9 +19877,9 @@ relationship: CL:4030046 PR:000001889 ! lacks_plasma_membrane_part CD14 molecule relationship: CL:4030046 PR:000002978 ! lacks_plasma_membrane_part lymphocyte antigen 6G relationship: CL:4030046 PR:000002981 ! lacks_plasma_membrane_part lymphocyte antigen 76 (mouse) relationship: develops_from CL:0000037 ! hematopoietic stem cell -relationship: has_characteristic PATO:0001402 ! multipotent -relationship: has_plasma_membrane_part PR:000001003 ! CD34 molecule relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0000053 PATO:0001402 ! has characteristic multipotent +relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule [Term] id: CL:0000838 @@ -19825,8 +19930,8 @@ xref: FMA:86713 is_a: CL:0000226 ! single nucleate cell is_a: CL:0000738 {is_inferred="true"} ! leukocyte intersection_of: CL:0000738 ! leukocyte -intersection_of: has_characteristic PATO:0001407 ! mononucleate -relationship: has_characteristic PATO:0001407 ! mononucleate +intersection_of: RO:0000053 PATO:0001407 ! has characteristic mononucleate +relationship: RO:0000053 PATO:0001407 ! has characteristic mononucleate [Term] id: CL:0000843 @@ -19844,19 +19949,19 @@ intersection_of: CL:0000785 ! mature B cell intersection_of: CL:4030046 PR:000001839 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD5 intersection_of: CL:4030046 PR:000001879 ! lacks_plasma_membrane_part leukosialin intersection_of: CL:4030046 PR:000002037 ! lacks_plasma_membrane_part complement component C1q receptor -intersection_of: has_plasma_membrane_part GO:0071738 ! IgD immunoglobulin complex -intersection_of: has_plasma_membrane_part GO:0071753 ! IgM immunoglobulin complex -intersection_of: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -intersection_of: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 -intersection_of: has_plasma_membrane_part PR:000001338 ! complement receptor type 2 +intersection_of: RO:0002104 GO:0071738 ! has plasma membrane part IgD immunoglobulin complex +intersection_of: RO:0002104 GO:0071753 ! has plasma membrane part IgM immunoglobulin complex +intersection_of: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +intersection_of: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 +intersection_of: RO:0002104 PR:000001338 ! has plasma membrane part complement receptor type 2 relationship: CL:4030046 PR:000001839 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD5 relationship: CL:4030046 PR:000001879 ! lacks_plasma_membrane_part leukosialin relationship: CL:4030046 PR:000002037 ! lacks_plasma_membrane_part complement component C1q receptor -relationship: has_plasma_membrane_part GO:0071738 ! IgD immunoglobulin complex -relationship: has_plasma_membrane_part GO:0071753 ! IgM immunoglobulin complex -relationship: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -relationship: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 -relationship: has_plasma_membrane_part PR:000001338 ! complement receptor type 2 +relationship: RO:0002104 GO:0071738 ! has plasma membrane part IgD immunoglobulin complex +relationship: RO:0002104 GO:0071753 ! has plasma membrane part IgM immunoglobulin complex +relationship: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +relationship: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 +relationship: RO:0002104 PR:000001338 ! has plasma membrane part complement receptor type 2 [Term] id: CL:0000844 @@ -19874,12 +19979,12 @@ synonym: "germinal center B-cell" EXACT [] synonym: "germinal center B-lymphocyte" EXACT [] is_a: CL:0000785 {is_inferred="true"} ! mature B cell intersection_of: CL:0000785 ! mature B cell -intersection_of: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 intersection_of: part_of UBERON:0001745 ! secondary nodular lymphoid tissue +intersection_of: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 relationship: develops_from CL:0000843 ! follicular B cell -relationship: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 relationship: part_of UBERON:0001745 ! secondary nodular lymphoid tissue relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 [Term] id: CL:0000845 @@ -19903,18 +20008,18 @@ intersection_of: CL:0000785 ! mature B cell intersection_of: capable_of GO:0042742 ! defense response to bacterium intersection_of: CL:4030046 PR:000001880 ! lacks_plasma_membrane_part low affinity immunoglobulin epsilon Fc receptor intersection_of: CL:4030046 PR:000002037 ! lacks_plasma_membrane_part complement component C1q receptor -intersection_of: has_high_plasma_membrane_amount GO:0071753 ! IgM immunoglobulin complex -intersection_of: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 -intersection_of: has_plasma_membrane_part PR:000001338 ! complement receptor type 2 intersection_of: part_of UBERON:0001251 ! marginal zone of spleen +intersection_of: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 +intersection_of: RO:0002104 PR:000001338 ! has plasma membrane part complement receptor type 2 +intersection_of: RO:0015015 GO:0071753 ! has high plasma membrane amount IgM immunoglobulin complex relationship: capable_of GO:0042742 ! defense response to bacterium relationship: CL:4030046 PR:000001880 ! lacks_plasma_membrane_part low affinity immunoglobulin epsilon Fc receptor relationship: CL:4030046 PR:000002037 ! lacks_plasma_membrane_part complement component C1q receptor -relationship: has_high_plasma_membrane_amount GO:0071753 ! IgM immunoglobulin complex -relationship: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 -relationship: has_plasma_membrane_part PR:000001338 ! complement receptor type 2 relationship: part_of UBERON:0001251 ! marginal zone of spleen relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 +relationship: RO:0002104 PR:000001338 ! has plasma membrane part complement receptor type 2 +relationship: RO:0015015 GO:0071753 ! has high plasma membrane amount IgM immunoglobulin complex [Term] id: CL:0000847 @@ -20012,7 +20117,9 @@ comment: Markers: CCR2+CXCCR1 (human, mouse, rat). subset: cellxgene_subset subset: human_reference_atlas synonym: "inflammatory monocyte" EXACT [] +xref: https://cellxgene.cziscience.com/cellguide/CL_0000860 is_a: CL:0000576 {is_inferred="true"} ! monocyte +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000576 ! monocyte intersection_of: capable_of GO:0002548 ! monocyte chemotaxis intersection_of: capable_of GO:0006909 ! phagocytosis @@ -20020,15 +20127,15 @@ intersection_of: capable_of GO:0006954 ! inflammatory response intersection_of: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule intersection_of: CL:4030046 PR:000001020 ! lacks_plasma_membrane_part CD3 epsilon intersection_of: CL:4030046 PR:000001289 ! lacks_plasma_membrane_part membrane-spanning 4-domains subfamily A member 1 -intersection_of: has_high_plasma_membrane_amount PR:000001199 ! C-C chemokine receptor type 2 +intersection_of: RO:0015015 PR:000001199 ! has high plasma membrane amount C-C chemokine receptor type 2 relationship: capable_of GO:0002548 ! monocyte chemotaxis relationship: capable_of GO:0006909 ! phagocytosis relationship: capable_of GO:0006954 ! inflammatory response relationship: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule relationship: CL:4030046 PR:000001020 ! lacks_plasma_membrane_part CD3 epsilon relationship: CL:4030046 PR:000001289 ! lacks_plasma_membrane_part membrane-spanning 4-domains subfamily A member 1 -relationship: has_high_plasma_membrane_amount PR:000001199 ! C-C chemokine receptor type 2 relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0015015 PR:000001199 ! has high plasma membrane amount C-C chemokine receptor type 2 [Term] id: CL:0000864 @@ -20064,15 +20171,16 @@ def: "A border associated macrophage that is adjacent to a small blood vessel of synonym: "pvMΦ" RELATED OMO:0003000 [PMID:37232741] is_a: CL:4033054 ! perivascular cell is_a: CL:4042003 {is_inferred="true"} ! border associated macrophage +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:4042003 ! border associated macrophage -intersection_of: has_plasma_membrane_part PR:000001483 ! low affinity immunoglobulin gamma Fc region receptor III -intersection_of: has_plasma_membrane_part PR:000001889 ! CD14 molecule -intersection_of: has_plasma_membrane_part PR:000001925 ! scavenger receptor cysteine-rich type 1 protein M130 intersection_of: part_of UBERON:0001981 ! blood vessel -relationship: has_plasma_membrane_part PR:000001483 ! low affinity immunoglobulin gamma Fc region receptor III -relationship: has_plasma_membrane_part PR:000001889 ! CD14 molecule -relationship: has_plasma_membrane_part PR:000001925 ! scavenger receptor cysteine-rich type 1 protein M130 +intersection_of: RO:0002104 PR:000001483 ! has plasma membrane part low affinity immunoglobulin gamma Fc region receptor III +intersection_of: RO:0002104 PR:000001889 ! has plasma membrane part CD14 molecule +intersection_of: RO:0002104 PR:000001925 ! has plasma membrane part scavenger receptor cysteine-rich type 1 protein M130 relationship: part_of UBERON:0001981 ! blood vessel +relationship: RO:0002104 PR:000001483 ! has plasma membrane part low affinity immunoglobulin gamma Fc region receptor III +relationship: RO:0002104 PR:000001889 ! has plasma membrane part CD14 molecule +relationship: RO:0002104 PR:000001925 ! has plasma membrane part scavenger receptor cysteine-rich type 1 protein M130 [Term] id: CL:0000889 @@ -20081,15 +20189,16 @@ def: "An immature myeloid leukocyte of heterogeneous phenotype found particularl comment: Markers: Mouse: CD11b+GR1+CD31+; Human: CD34+ CD33+CD15-CD13+. (According to some reports in humans these cells are iNOS+ARG1+IL13+IFNg+); location: In cancerous tissue; in the blood and lymphoid organs in sepsis. subset: blood_and_immune_upper_slim is_a: CL:0000766 {is_inferred="true"} ! myeloid leukocyte +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000766 ! myeloid leukocyte intersection_of: capable_of GO:0050777 ! negative regulation of immune response -intersection_of: has_characteristic PATO:0001501 ! immature -intersection_of: has_plasma_membrane_part PR:000001006 ! receptor-type tyrosine-protein phosphatase C -intersection_of: has_plasma_membrane_part PR:000001012 ! integrin alpha-M +intersection_of: RO:0000053 PATO:0001501 ! has characteristic immature +intersection_of: RO:0002104 PR:000001006 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C +intersection_of: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M relationship: capable_of GO:0050777 ! negative regulation of immune response -relationship: has_characteristic PATO:0001501 ! immature -relationship: has_plasma_membrane_part PR:000001006 ! receptor-type tyrosine-protein phosphatase C -relationship: has_plasma_membrane_part PR:000001012 ! integrin alpha-M +relationship: RO:0000053 PATO:0001501 ! has characteristic immature +relationship: RO:0002104 PR:000001006 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C +relationship: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M [Term] id: CL:0000893 @@ -20127,19 +20236,20 @@ synonym: "DN1 thymocyte" EXACT [] synonym: "double negative 1" EXACT [] synonym: "preT.DN1.Th" EXACT [] is_a: CL:0000827 {is_inferred="true"} ! pro-T cell +is_a: PR:000050567 ! obsolete protein-containing material entity is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure intersection_of: CL:0000827 ! pro-T cell intersection_of: CL:4030046 PR:000001004 ! lacks_plasma_membrane_part CD4 molecule intersection_of: CL:4030046 PR:000001084 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD8 alpha chain intersection_of: CL:4030046 PR:000001380 ! lacks_plasma_membrane_part interleukin-2 receptor subunit alpha -intersection_of: has_plasma_membrane_part PR:000001307 ! CD44 molecule intersection_of: part_of UBERON:0002370 ! thymus +intersection_of: RO:0002104 PR:000001307 ! has plasma membrane part CD44 molecule relationship: CL:4030046 PR:000001004 ! lacks_plasma_membrane_part CD4 molecule relationship: CL:4030046 PR:000001084 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD8 alpha chain relationship: CL:4030046 PR:000001380 ! lacks_plasma_membrane_part interleukin-2 receptor subunit alpha relationship: develops_from CL:0002425 ! early T lineage precursor -relationship: has_plasma_membrane_part PR:000001307 ! CD44 molecule relationship: part_of UBERON:0002370 ! thymus +relationship: RO:0002104 PR:000001307 ! has plasma membrane part CD44 molecule [Term] id: CL:0000936 @@ -20158,17 +20268,17 @@ intersection_of: CL:0000837 ! hematopoietic multipotent progenitor cell intersection_of: capable_of GO:0030098 ! lymphocyte differentiation intersection_of: CL:4030046 PR:000001024 ! lacks_plasma_membrane_part neural cell adhesion molecule 1 intersection_of: CL:4030046 PR:000001460 ! lacks_plasma_membrane_part glycophorin-A -intersection_of: has_plasma_membrane_part PR:000002001 ! receptor-type tyrosine-protein kinase FLT3 -intersection_of: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor -intersection_of: has_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 +intersection_of: RO:0002104 PR:000002001 ! has plasma membrane part receptor-type tyrosine-protein kinase FLT3 +intersection_of: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor +intersection_of: RO:0002104 PR:000002979 ! has plasma membrane part lymphocyte antigen 6A-2/6E-1 relationship: capable_of GO:0030098 ! lymphocyte differentiation relationship: CL:4030046 PR:000001024 ! lacks_plasma_membrane_part neural cell adhesion molecule 1 relationship: CL:4030046 PR:000001460 ! lacks_plasma_membrane_part glycophorin-A relationship: develops_from CL:0002035 ! Slamf1-negative multipotent progenitor cell -relationship: has_plasma_membrane_part PR:000002001 ! receptor-type tyrosine-protein kinase FLT3 -relationship: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor -relationship: has_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:000002001 ! has plasma membrane part receptor-type tyrosine-protein kinase FLT3 +relationship: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor +relationship: RO:0002104 PR:000002979 ! has plasma membrane part lymphocyte antigen 6A-2/6E-1 [Term] id: CL:0000937 @@ -20178,13 +20288,14 @@ comment: These cells are also reportedly CD7-low, CD10-negative, CD45RA-positive subset: cellxgene_subset synonym: "pre-NK cell" EXACT [] is_a: CL:0000623 ! natural killer cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000623 ! natural killer cell -intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule -intersection_of: has_plasma_membrane_part PR:000001381 ! interleukin-2 receptor subunit beta -intersection_of: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor -relationship: has_plasma_membrane_part PR:000001003 ! CD34 molecule -relationship: has_plasma_membrane_part PR:000001381 ! interleukin-2 receptor subunit beta -relationship: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor +intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +intersection_of: RO:0002104 PR:000001381 ! has plasma membrane part interleukin-2 receptor subunit beta +intersection_of: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor +relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +relationship: RO:0002104 PR:000001381 ! has plasma membrane part interleukin-2 receptor subunit beta +relationship: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor [Term] id: CL:0000941 @@ -20196,13 +20307,13 @@ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure intersection_of: CL:0000990 ! conventional dendritic cell intersection_of: CL:4030046 PR:000001012 ! lacks_plasma_membrane_part integrin alpha-M intersection_of: CL:4030046 PR:000001015 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RA -intersection_of: has_plasma_membrane_part PR:000001013 ! integrin alpha-X intersection_of: part_of UBERON:0002370 ! thymus +intersection_of: RO:0002104 PR:000001013 ! has plasma membrane part integrin alpha-X relationship: CL:4030046 PR:000001012 ! lacks_plasma_membrane_part integrin alpha-M relationship: CL:4030046 PR:000001015 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RA relationship: develops_from CL:0000894 ! DN1 thymic pro-T cell -relationship: has_plasma_membrane_part PR:000001013 ! integrin alpha-X relationship: part_of UBERON:0002370 ! thymus +relationship: RO:0002104 PR:000001013 ! has plasma membrane part integrin alpha-X [Term] id: CL:0000945 @@ -20236,8 +20347,8 @@ synonym: "memory IgE B-cell" EXACT [] synonym: "memory IgE B-lymphocyte" EXACT [] is_a: CL:0000972 {is_inferred="true"} ! class switched memory B cell intersection_of: CL:0000972 ! class switched memory B cell -intersection_of: has_plasma_membrane_part GO:0071742 ! IgE immunoglobulin complex -relationship: has_plasma_membrane_part GO:0071742 ! IgE immunoglobulin complex +intersection_of: RO:0002104 GO:0071742 ! has plasma membrane part IgE immunoglobulin complex +relationship: RO:0002104 GO:0071742 ! has plasma membrane part IgE immunoglobulin complex [Term] id: CL:0000952 @@ -20246,13 +20357,13 @@ def: "An preBRC-positive large pre-B-II cell is a large pre-B-II cell that is pr is_a: CL:0000957 {is_inferred="true"} ! large pre-B-II cell intersection_of: CL:0000957 ! large pre-B-II cell intersection_of: CL:4030044 GO:0071708 ! has_not_completed immunoglobulin light chain V-J recombination -intersection_of: has_plasma_membrane_part GO:0035369 ! pre-B cell receptor complex -intersection_of: has_plasma_membrane_part PR:000001858 ! immunoglobulin iota chain -intersection_of: has_plasma_membrane_part PR:000001859 ! immunoglobulin lambda-like polypeptide 1 +intersection_of: RO:0002104 GO:0035369 ! has plasma membrane part pre-B cell receptor complex +intersection_of: RO:0002104 PR:000001858 ! has plasma membrane part immunoglobulin iota chain +intersection_of: RO:0002104 PR:000001859 ! has plasma membrane part immunoglobulin lambda-like polypeptide 1 relationship: CL:4030044 GO:0071708 ! has_not_completed immunoglobulin light chain V-J recombination -relationship: has_plasma_membrane_part GO:0035369 ! pre-B cell receptor complex -relationship: has_plasma_membrane_part PR:000001858 ! immunoglobulin iota chain -relationship: has_plasma_membrane_part PR:000001859 ! immunoglobulin lambda-like polypeptide 1 +relationship: RO:0002104 GO:0035369 ! has plasma membrane part pre-B cell receptor complex +relationship: RO:0002104 PR:000001858 ! has plasma membrane part immunoglobulin iota chain +relationship: RO:0002104 PR:000001859 ! has plasma membrane part immunoglobulin lambda-like polypeptide 1 [Term] id: CL:0000953 @@ -20321,17 +20432,17 @@ intersection_of: CL:0000817 ! precursor B cell intersection_of: has_part PR:000003457 ! V(D)J recombination-activating protein 1 intersection_of: has_part PR:000003460 ! V(D)J recombination-activating protein 2 intersection_of: has_part PR:000006611 ! DNA nucleotidylexotransferase -intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule -intersection_of: has_plasma_membrane_part PR:000001858 ! immunoglobulin iota chain -intersection_of: has_plasma_membrane_part PR:000001859 ! immunoglobulin lambda-like polypeptide 1 intersection_of: participates_in GO:0071707 ! immunoglobulin heavy chain V-D-J recombination +intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +intersection_of: RO:0002104 PR:000001858 ! has plasma membrane part immunoglobulin iota chain +intersection_of: RO:0002104 PR:000001859 ! has plasma membrane part immunoglobulin lambda-like polypeptide 1 relationship: has_part PR:000003457 ! V(D)J recombination-activating protein 1 relationship: has_part PR:000003460 ! V(D)J recombination-activating protein 2 relationship: has_part PR:000006611 ! DNA nucleotidylexotransferase -relationship: has_plasma_membrane_part PR:000001003 ! CD34 molecule -relationship: has_plasma_membrane_part PR:000001858 ! immunoglobulin iota chain -relationship: has_plasma_membrane_part PR:000001859 ! immunoglobulin lambda-like polypeptide 1 relationship: participates_in GO:0071707 ! immunoglobulin heavy chain V-D-J recombination +relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +relationship: RO:0002104 PR:000001858 ! has plasma membrane part immunoglobulin iota chain +relationship: RO:0002104 PR:000001859 ! has plasma membrane part immunoglobulin lambda-like polypeptide 1 [Term] id: CL:0000957 @@ -20363,10 +20474,10 @@ is_a: CL:0002056 ! fraction F mature B cell intersection_of: CL:0000843 ! follicular B cell intersection_of: CL:4030046 PR:000001408 ! lacks_plasma_membrane_part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 intersection_of: CL:4030046 PR:000001880 ! lacks_plasma_membrane_part low affinity immunoglobulin epsilon Fc receptor -intersection_of: has_plasma_membrane_part GO:0071738 ! IgD immunoglobulin complex +intersection_of: RO:0002104 GO:0071738 ! has plasma membrane part IgD immunoglobulin complex relationship: CL:4030046 PR:000001408 ! lacks_plasma_membrane_part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 relationship: CL:4030046 PR:000001880 ! lacks_plasma_membrane_part low affinity immunoglobulin epsilon Fc receptor -relationship: has_plasma_membrane_part GO:0071738 ! IgD immunoglobulin complex +relationship: RO:0002104 GO:0071738 ! has plasma membrane part IgD immunoglobulin complex [Term] id: CL:0000962 @@ -20378,13 +20489,13 @@ synonym: "Bm2 B-cell" EXACT [] synonym: "Bm2 B-lymphocyte" EXACT [] is_a: CL:0000843 {is_inferred="true"} ! follicular B cell intersection_of: CL:0000843 ! follicular B cell -intersection_of: has_plasma_membrane_part GO:0071738 ! IgD immunoglobulin complex -intersection_of: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -intersection_of: has_plasma_membrane_part PR:000001880 ! low affinity immunoglobulin epsilon Fc receptor +intersection_of: RO:0002104 GO:0071738 ! has plasma membrane part IgD immunoglobulin complex +intersection_of: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +intersection_of: RO:0002104 PR:000001880 ! has plasma membrane part low affinity immunoglobulin epsilon Fc receptor relationship: develops_from CL:0000961 ! Bm1 B cell -relationship: has_plasma_membrane_part GO:0071738 ! IgD immunoglobulin complex -relationship: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -relationship: has_plasma_membrane_part PR:000001880 ! low affinity immunoglobulin epsilon Fc receptor +relationship: RO:0002104 GO:0071738 ! has plasma membrane part IgD immunoglobulin complex +relationship: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +relationship: RO:0002104 PR:000001880 ! has plasma membrane part low affinity immunoglobulin epsilon Fc receptor [Term] id: CL:0000963 @@ -20396,12 +20507,12 @@ synonym: "Bm3-delta B-lymphocyte" EXACT [] is_a: CL:0000844 {is_inferred="true"} ! germinal center B cell intersection_of: CL:0000844 ! germinal center B cell intersection_of: CL:4030046 GO:0071753 ! lacks_plasma_membrane_part IgM immunoglobulin complex -intersection_of: has_plasma_membrane_part GO:0071738 ! IgD immunoglobulin complex -intersection_of: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +intersection_of: RO:0002104 GO:0071738 ! has plasma membrane part IgD immunoglobulin complex +intersection_of: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 relationship: CL:4030046 GO:0071753 ! lacks_plasma_membrane_part IgM immunoglobulin complex relationship: develops_from CL:0000965 ! Bm3 B cell -relationship: has_plasma_membrane_part GO:0071738 ! IgD immunoglobulin complex -relationship: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +relationship: RO:0002104 GO:0071738 ! has plasma membrane part IgD immunoglobulin complex +relationship: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 [Term] id: CL:0000964 @@ -20417,13 +20528,13 @@ is_a: CL:0000844 {is_inferred="true"} ! germinal center B cell intersection_of: CL:0000844 ! germinal center B cell intersection_of: capable_of GO:0002634 ! regulation of germinal center formation intersection_of: CL:4030046 PR:000001880 ! lacks_plasma_membrane_part low affinity immunoglobulin epsilon Fc receptor -intersection_of: has_plasma_membrane_part GO:0071738 ! IgD immunoglobulin complex -intersection_of: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +intersection_of: RO:0002104 GO:0071738 ! has plasma membrane part IgD immunoglobulin complex +intersection_of: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 relationship: capable_of GO:0002634 ! regulation of germinal center formation relationship: CL:4030046 PR:000001880 ! lacks_plasma_membrane_part low affinity immunoglobulin epsilon Fc receptor relationship: develops_from CL:0000962 ! Bm2 B cell -relationship: has_plasma_membrane_part GO:0071738 ! IgD immunoglobulin complex -relationship: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +relationship: RO:0002104 GO:0071738 ! has plasma membrane part IgD immunoglobulin complex +relationship: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 [Term] id: CL:0000965 @@ -20438,13 +20549,13 @@ is_a: CL:0000844 {is_inferred="true"} ! germinal center B cell intersection_of: CL:0000844 ! germinal center B cell intersection_of: capable_of GO:0016446 ! somatic hypermutation of immunoglobulin genes intersection_of: CL:4030046 GO:0071738 ! lacks_plasma_membrane_part IgD immunoglobulin complex -intersection_of: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -intersection_of: has_plasma_membrane_part PR:000003516 ! lactosylceramide 4-alpha-galactosyltransferase +intersection_of: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +intersection_of: RO:0002104 PR:000003516 ! has plasma membrane part lactosylceramide 4-alpha-galactosyltransferase relationship: capable_of GO:0016446 ! somatic hypermutation of immunoglobulin genes relationship: CL:4030046 GO:0071738 ! lacks_plasma_membrane_part IgD immunoglobulin complex relationship: develops_from CL:0000964 ! Bm2' B cell -relationship: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -relationship: has_plasma_membrane_part PR:000003516 ! lactosylceramide 4-alpha-galactosyltransferase +relationship: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +relationship: RO:0002104 PR:000003516 ! has plasma membrane part lactosylceramide 4-alpha-galactosyltransferase [Term] id: CL:0000966 @@ -20459,13 +20570,13 @@ is_a: CL:0000844 {is_inferred="true"} ! germinal center B cell intersection_of: CL:0000844 ! germinal center B cell intersection_of: CL:4030046 GO:0071738 ! lacks_plasma_membrane_part IgD immunoglobulin complex intersection_of: CL:4030046 PR:000003516 ! lacks_plasma_membrane_part lactosylceramide 4-alpha-galactosyltransferase -intersection_of: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 intersection_of: output_of GO:0016446 ! somatic hypermutation of immunoglobulin genes +intersection_of: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 relationship: CL:4030046 GO:0071738 ! lacks_plasma_membrane_part IgD immunoglobulin complex relationship: CL:4030046 PR:000003516 ! lacks_plasma_membrane_part lactosylceramide 4-alpha-galactosyltransferase relationship: develops_from CL:0000963 ! Bm3-delta B cell -relationship: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 relationship: output_of GO:0016446 ! somatic hypermutation of immunoglobulin genes +relationship: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 [Term] id: CL:0000967 @@ -20503,18 +20614,18 @@ intersection_of: CL:4030046 GO:0071735 ! lacks_plasma_membrane_part IgG immunogl intersection_of: CL:4030046 GO:0071742 ! lacks_plasma_membrane_part IgE immunoglobulin complex intersection_of: CL:4030046 GO:0071745 ! lacks_plasma_membrane_part IgA immunoglobulin complex intersection_of: CL:4030046 PR:000001935 ! lacks_plasma_membrane_part syndecan-1 -intersection_of: has_plasma_membrane_part GO:0071738 ! IgD immunoglobulin complex -intersection_of: has_plasma_membrane_part GO:0071753 ! IgM immunoglobulin complex -intersection_of: has_plasma_membrane_part PR:000001963 ! CD27 molecule +intersection_of: RO:0002104 GO:0071738 ! has plasma membrane part IgD immunoglobulin complex +intersection_of: RO:0002104 GO:0071753 ! has plasma membrane part IgM immunoglobulin complex +intersection_of: RO:0002104 PR:000001963 ! has plasma membrane part CD27 molecule relationship: CL:4030046 GO:0071735 ! lacks_plasma_membrane_part IgG immunoglobulin complex relationship: CL:4030046 GO:0071742 ! lacks_plasma_membrane_part IgE immunoglobulin complex relationship: CL:4030046 GO:0071745 ! lacks_plasma_membrane_part IgA immunoglobulin complex relationship: CL:4030046 PR:000001935 ! lacks_plasma_membrane_part syndecan-1 relationship: develops_from CL:0000980 ! plasmablast -relationship: has_plasma_membrane_part GO:0071738 ! IgD immunoglobulin complex -relationship: has_plasma_membrane_part GO:0071753 ! IgM immunoglobulin complex -relationship: has_plasma_membrane_part PR:000001963 ! CD27 molecule relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 GO:0071738 ! has plasma membrane part IgD immunoglobulin complex +relationship: RO:0002104 GO:0071753 ! has plasma membrane part IgM immunoglobulin complex +relationship: RO:0002104 PR:000001963 ! has plasma membrane part CD27 molecule [Term] id: CL:0000971 @@ -20531,9 +20642,9 @@ synonym: "memory IgM B-lymphocyte" EXACT [] is_a: CL:0001053 ! IgD-negative memory B cell intersection_of: CL:0000787 ! memory B cell intersection_of: CL:4030046 GO:0071738 ! lacks_plasma_membrane_part IgD immunoglobulin complex -intersection_of: has_plasma_membrane_part GO:0071753 ! IgM immunoglobulin complex +intersection_of: RO:0002104 GO:0071753 ! has plasma membrane part IgM immunoglobulin complex relationship: CL:4030046 GO:0071738 ! lacks_plasma_membrane_part IgD immunoglobulin complex -relationship: has_plasma_membrane_part GO:0071753 ! IgM immunoglobulin complex +relationship: RO:0002104 GO:0071753 ! has plasma membrane part IgM immunoglobulin complex [Term] id: CL:0000972 @@ -20548,13 +20659,13 @@ synonym: "class switched memory B-lymphocyte" EXACT [] is_a: CL:0000787 {is_inferred="true"} ! memory B cell intersection_of: CL:0000787 ! memory B cell intersection_of: CL:4030046 GO:0071753 ! lacks_plasma_membrane_part IgM immunoglobulin complex -intersection_of: has_plasma_membrane_part PR:000001963 ! CD27 molecule intersection_of: output_of GO:0045190 ! isotype switching +intersection_of: RO:0002104 PR:000001963 ! has plasma membrane part CD27 molecule relationship: CL:4030046 GO:0071753 ! lacks_plasma_membrane_part IgM immunoglobulin complex relationship: develops_from CL:0000970 ! unswitched memory B cell -relationship: has_plasma_membrane_part PR:000001963 ! CD27 molecule relationship: output_of GO:0045190 ! isotype switching relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:000001963 ! has plasma membrane part CD27 molecule [Term] id: CL:0000973 @@ -20570,8 +20681,8 @@ synonym: "memory IgA B-cell" EXACT [] synonym: "memory IgA B-lymphocyte" EXACT [] is_a: CL:0000972 {is_inferred="true"} ! class switched memory B cell intersection_of: CL:0000972 ! class switched memory B cell -intersection_of: has_plasma_membrane_part GO:0071745 ! IgA immunoglobulin complex -relationship: has_plasma_membrane_part GO:0071745 ! IgA immunoglobulin complex +intersection_of: RO:0002104 GO:0071745 ! has plasma membrane part IgA immunoglobulin complex +relationship: RO:0002104 GO:0071745 ! has plasma membrane part IgA immunoglobulin complex [Term] id: CL:0000979 @@ -20587,8 +20698,8 @@ synonym: "memory IgG B-cell" EXACT [] synonym: "memory IgG B-lymphocyte" EXACT [] is_a: CL:0000972 {is_inferred="true"} ! class switched memory B cell intersection_of: CL:0000972 ! class switched memory B cell -intersection_of: has_plasma_membrane_part GO:0071735 ! IgG immunoglobulin complex -relationship: has_plasma_membrane_part GO:0071735 ! IgG immunoglobulin complex +intersection_of: RO:0002104 GO:0071735 ! has plasma membrane part IgG immunoglobulin complex +relationship: RO:0002104 GO:0071735 ! has plasma membrane part IgG immunoglobulin complex [Term] id: CL:0000980 @@ -20605,16 +20716,16 @@ is_a: CL:0000946 ! antibody secreting cell intersection_of: CL:0000785 ! mature B cell intersection_of: CL:4030046 PR:000001289 ! lacks_plasma_membrane_part membrane-spanning 4-domains subfamily A member 1 intersection_of: CL:4030046 PR:000001935 ! lacks_plasma_membrane_part syndecan-1 -intersection_of: has_high_plasma_membrane_amount PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -intersection_of: has_high_plasma_membrane_amount PR:000001963 ! CD27 molecule intersection_of: produces GO:0042571 ! immunoglobulin complex, circulating +intersection_of: RO:0015015 PR:000001408 ! has high plasma membrane amount ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +intersection_of: RO:0015015 PR:000001963 ! has high plasma membrane amount CD27 molecule relationship: CL:4030046 PR:000001289 ! lacks_plasma_membrane_part membrane-spanning 4-domains subfamily A member 1 relationship: CL:4030046 PR:000001935 ! lacks_plasma_membrane_part syndecan-1 relationship: develops_from CL:0000785 ! mature B cell -relationship: has_high_plasma_membrane_amount PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -relationship: has_high_plasma_membrane_amount PR:000001963 ! CD27 molecule relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: produces GO:0042571 ! immunoglobulin complex, circulating +relationship: RO:0015015 PR:000001408 ! has high plasma membrane amount ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +relationship: RO:0015015 PR:000001963 ! has high plasma membrane amount CD27 molecule [Term] id: CL:0000981 @@ -20665,9 +20776,9 @@ synonym: "veiled cell" BROAD [] xref: FMA:84191 is_a: CL:0000451 {is_inferred="true"} ! dendritic cell intersection_of: CL:0000451 ! dendritic cell -intersection_of: has_high_plasma_membrane_amount PR:000001013 ! integrin alpha-X -relationship: has_high_plasma_membrane_amount PR:000001013 ! integrin alpha-X +intersection_of: RO:0015015 PR:000001013 ! has high plasma membrane amount integrin alpha-X relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0015015 PR:000001013 ! has high plasma membrane amount integrin alpha-X [Term] id: CL:0000995 @@ -20686,6 +20797,7 @@ comment: Cell markers are associated with mouse hematopoietic stem cell. Origina synonym: "LSK stem cell" EXACT [] synonym: "Sca1-positive hematopoietic stem cell" EXACT [] is_a: CL:0000037 {is_inferred="true"} ! hematopoietic stem cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000037 ! hematopoietic stem cell intersection_of: CL:4030046 PR:000001014 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RABC intersection_of: CL:4030046 PR:000001084 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD8 alpha chain @@ -20695,9 +20807,9 @@ intersection_of: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleuki intersection_of: CL:4030046 PR:000001896 ! lacks_plasma_membrane_part natural killer cell receptor 2B4 intersection_of: CL:4030046 PR:000002977 ! lacks_plasma_membrane_part killer cell lectin-like receptor subfamily B member 1C intersection_of: CL:4030046 PR:000002981 ! lacks_plasma_membrane_part lymphocyte antigen 76 (mouse) -intersection_of: has_plasma_membrane_part PR:000001833 ! SLAM family member 1 -intersection_of: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor -intersection_of: has_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 +intersection_of: RO:0002104 PR:000001833 ! has plasma membrane part SLAM family member 1 +intersection_of: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor +intersection_of: RO:0002104 PR:000002979 ! has plasma membrane part lymphocyte antigen 6A-2/6E-1 disjoint_from: CL:0001024 ! CD34-positive, CD38-negative hematopoietic stem cell relationship: CL:4030046 PR:000001014 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RABC relationship: CL:4030046 PR:000001084 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD8 alpha chain @@ -20707,9 +20819,9 @@ relationship: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 relationship: CL:4030046 PR:000001896 ! lacks_plasma_membrane_part natural killer cell receptor 2B4 relationship: CL:4030046 PR:000002977 ! lacks_plasma_membrane_part killer cell lectin-like receptor subfamily B member 1C relationship: CL:4030046 PR:000002981 ! lacks_plasma_membrane_part lymphocyte antigen 76 (mouse) -relationship: has_plasma_membrane_part PR:000001833 ! SLAM family member 1 -relationship: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor -relationship: has_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 +relationship: RO:0002104 PR:000001833 ! has plasma membrane part SLAM family member 1 +relationship: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor +relationship: RO:0002104 PR:000002979 ! has plasma membrane part lymphocyte antigen 6A-2/6E-1 [Term] id: CL:0001012 @@ -20737,17 +20849,18 @@ synonym: "CD10-positive common lymphocyte progenitor" EXACT [] synonym: "CD10-positive common lymphoid precursor" EXACT [] is_a: CL:0000051 {is_inferred="true"} ! common lymphoid progenitor is_a: CL:0000995 ! CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000051 ! common lymphoid progenitor -intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule -intersection_of: has_plasma_membrane_part PR:000001015 ! receptor-type tyrosine-protein phosphatase C isoform CD45RA -intersection_of: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -intersection_of: has_plasma_membrane_part PR:000001898 ! neprilysin +intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +intersection_of: RO:0002104 PR:000001015 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RA +intersection_of: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +intersection_of: RO:0002104 PR:000001898 ! has plasma membrane part neprilysin disjoint_from: CL:0001025 ! Kit-positive, Sca1-positive common lymphoid progenitor relationship: develops_from CL:0002043 ! CD34-positive, CD38-negative multipotent progenitor cell -relationship: has_plasma_membrane_part PR:000001003 ! CD34 molecule -relationship: has_plasma_membrane_part PR:000001015 ! receptor-type tyrosine-protein phosphatase C isoform CD45RA -relationship: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -relationship: has_plasma_membrane_part PR:000001898 ! neprilysin +relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +relationship: RO:0002104 PR:000001015 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RA +relationship: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +relationship: RO:0002104 PR:000001898 ! has plasma membrane part neprilysin [Term] id: CL:0001022 @@ -20757,12 +20870,13 @@ comment: These markers are associated with human cells. Originally described in is_a: CL:0000576 {is_inferred="true"} ! monocyte is_a: CL:0000839 ! myeloid lineage restricted progenitor cell is_a: CL:0001019 ! CD115-positive monocyte OR common dendritic progenitor +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000576 ! monocyte -intersection_of: has_plasma_membrane_part PR:000001012 ! integrin alpha-M -intersection_of: has_plasma_membrane_part PR:000002062 ! macrophage colony-stimulating factor 1 receptor +intersection_of: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M +intersection_of: RO:0002104 PR:000002062 ! has plasma membrane part macrophage colony-stimulating factor 1 receptor relationship: develops_from CL:0002001 ! CD34-positive, CD38-positive granulocyte monocyte progenitor -relationship: has_plasma_membrane_part PR:000001012 ! integrin alpha-M -relationship: has_plasma_membrane_part PR:000002062 ! macrophage colony-stimulating factor 1 receptor +relationship: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M +relationship: RO:0002104 PR:000002062 ! has plasma membrane part macrophage colony-stimulating factor 1 receptor [Term] id: CL:0001023 @@ -20775,16 +20889,16 @@ is_a: CL:0001059 {is_inferred="true"} ! common myeloid progenitor, CD34-positive intersection_of: CL:0001059 ! common myeloid progenitor, CD34-positive intersection_of: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 receptor subunit alpha intersection_of: CL:4030046 PR:000002979 ! lacks_plasma_membrane_part lymphocyte antigen 6A-2/6E-1 -intersection_of: has_low_plasma_membrane_amount GO:0033001 ! Fc-gamma receptor III complex -intersection_of: has_low_plasma_membrane_amount PR:000001481 ! low affinity immunoglobulin gamma Fc region receptor II-b -intersection_of: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor +intersection_of: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor +intersection_of: RO:0015016 GO:0033001 ! has low plasma membrane amount Fc-gamma receptor III complex +intersection_of: RO:0015016 PR:000001481 ! has low plasma membrane amount low affinity immunoglobulin gamma Fc region receptor II-b disjoint_from: CL:0001026 ! CD34-positive, CD38-positive common myeloid progenitor relationship: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 receptor subunit alpha relationship: CL:4030046 PR:000002979 ! lacks_plasma_membrane_part lymphocyte antigen 6A-2/6E-1 relationship: develops_from CL:0002035 ! Slamf1-negative multipotent progenitor cell -relationship: has_low_plasma_membrane_amount GO:0033001 ! Fc-gamma receptor III complex -relationship: has_low_plasma_membrane_amount PR:000001481 ! low affinity immunoglobulin gamma Fc region receptor II-b -relationship: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor +relationship: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor +relationship: RO:0015016 GO:0033001 ! has low plasma membrane amount Fc-gamma receptor III complex +relationship: RO:0015016 PR:000001481 ! has low plasma membrane amount low affinity immunoglobulin gamma Fc region receptor II-b [Term] id: CL:0001024 @@ -20795,25 +20909,26 @@ subset: cellxgene_subset synonym: "CD133-positive hematopoietic stem cell" EXACT [PMID:16140871] xref: CALOHA:TS-0448 is_a: CL:0000037 {is_inferred="true"} ! hematopoietic stem cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000037 ! hematopoietic stem cell intersection_of: CL:4030046 PR:000001024 ! lacks_plasma_membrane_part neural cell adhesion molecule 1 intersection_of: CL:4030046 PR:000001408 ! lacks_plasma_membrane_part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 intersection_of: CL:4030046 PR:000001483 ! lacks_plasma_membrane_part low affinity immunoglobulin gamma Fc region receptor III intersection_of: CL:4030046 PR:000001892 ! lacks_plasma_membrane_part CD33 molecule intersection_of: CL:4030046 PR:000001945 ! lacks_plasma_membrane_part transferrin receptor protein 1 -intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule -intersection_of: has_plasma_membrane_part PR:000001786 ! prominin-1 -intersection_of: has_plasma_membrane_part PR:000001809 ! CD59-like glycoprotein -intersection_of: has_plasma_membrane_part PR:000001843 ! Thy-1 membrane glycoprotein +intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +intersection_of: RO:0002104 PR:000001786 ! has plasma membrane part prominin-1 +intersection_of: RO:0002104 PR:000001809 ! has plasma membrane part CD59-like glycoprotein +intersection_of: RO:0002104 PR:000001843 ! has plasma membrane part Thy-1 membrane glycoprotein relationship: CL:4030046 PR:000001024 ! lacks_plasma_membrane_part neural cell adhesion molecule 1 relationship: CL:4030046 PR:000001408 ! lacks_plasma_membrane_part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 relationship: CL:4030046 PR:000001483 ! lacks_plasma_membrane_part low affinity immunoglobulin gamma Fc region receptor III relationship: CL:4030046 PR:000001892 ! lacks_plasma_membrane_part CD33 molecule relationship: CL:4030046 PR:000001945 ! lacks_plasma_membrane_part transferrin receptor protein 1 -relationship: has_plasma_membrane_part PR:000001003 ! CD34 molecule -relationship: has_plasma_membrane_part PR:000001786 ! prominin-1 -relationship: has_plasma_membrane_part PR:000001809 ! CD59-like glycoprotein -relationship: has_plasma_membrane_part PR:000001843 ! Thy-1 membrane glycoprotein +relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +relationship: RO:0002104 PR:000001786 ! has plasma membrane part prominin-1 +relationship: RO:0002104 PR:000001809 ! has plasma membrane part CD59-like glycoprotein +relationship: RO:0002104 PR:000001843 ! has plasma membrane part Thy-1 membrane glycoprotein [Term] id: CL:0001025 @@ -20825,22 +20940,23 @@ synonym: "CD217-positive common lymphocyte progenitor" EXACT [] synonym: "CD217-positive common lymphoid precursor" EXACT [] is_a: CL:0000051 {is_inferred="true"} ! common lymphoid progenitor is_a: CL:0001030 ! CD117-positive common myeloid progenitor OR CD217-positive common lymphoid progenitor +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000051 ! common lymphoid progenitor intersection_of: CL:4030046 PR:000001014 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RABC -intersection_of: has_low_plasma_membrane_amount PR:000002065 ! mast/stem cell growth factor receptor -intersection_of: has_low_plasma_membrane_amount PR:000002979 ! lymphocyte antigen 6A-2/6E-1 -intersection_of: has_plasma_membrane_part PR:000001869 ! interleukin-7 receptor subunit alpha -intersection_of: has_plasma_membrane_part PR:000001963 ! CD27 molecule -intersection_of: has_plasma_membrane_part PR:000002001 ! receptor-type tyrosine-protein kinase FLT3 -intersection_of: has_plasma_membrane_part PR:000002037 ! complement component C1q receptor +intersection_of: RO:0002104 PR:000001869 ! has plasma membrane part interleukin-7 receptor subunit alpha +intersection_of: RO:0002104 PR:000001963 ! has plasma membrane part CD27 molecule +intersection_of: RO:0002104 PR:000002001 ! has plasma membrane part receptor-type tyrosine-protein kinase FLT3 +intersection_of: RO:0002104 PR:000002037 ! has plasma membrane part complement component C1q receptor +intersection_of: RO:0015016 PR:000002065 ! has low plasma membrane amount mast/stem cell growth factor receptor +intersection_of: RO:0015016 PR:000002979 ! has low plasma membrane amount lymphocyte antigen 6A-2/6E-1 relationship: CL:4030046 PR:000001014 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RABC relationship: develops_from CL:0000936 ! early lymphoid progenitor -relationship: has_low_plasma_membrane_amount PR:000002065 ! mast/stem cell growth factor receptor -relationship: has_low_plasma_membrane_amount PR:000002979 ! lymphocyte antigen 6A-2/6E-1 -relationship: has_plasma_membrane_part PR:000001869 ! interleukin-7 receptor subunit alpha -relationship: has_plasma_membrane_part PR:000001963 ! CD27 molecule -relationship: has_plasma_membrane_part PR:000002001 ! receptor-type tyrosine-protein kinase FLT3 -relationship: has_plasma_membrane_part PR:000002037 ! complement component C1q receptor +relationship: RO:0002104 PR:000001869 ! has plasma membrane part interleukin-7 receptor subunit alpha +relationship: RO:0002104 PR:000001963 ! has plasma membrane part CD27 molecule +relationship: RO:0002104 PR:000002001 ! has plasma membrane part receptor-type tyrosine-protein kinase FLT3 +relationship: RO:0002104 PR:000002037 ! has plasma membrane part complement component C1q receptor +relationship: RO:0015016 PR:000002065 ! has low plasma membrane amount mast/stem cell growth factor receptor +relationship: RO:0015016 PR:000002979 ! has low plasma membrane amount lymphocyte antigen 6A-2/6E-1 [Term] id: CL:0001026 @@ -20855,15 +20971,15 @@ intersection_of: CL:4030046 PR:000001015 ! lacks_plasma_membrane_part receptor-t intersection_of: CL:4030046 PR:000001836 ! lacks_plasma_membrane_part CD7 molecule intersection_of: CL:4030046 PR:000001867 ! lacks_plasma_membrane_part interleukin-5 receptor subunit alpha intersection_of: CL:4030046 PR:000001898 ! lacks_plasma_membrane_part neprilysin -intersection_of: has_low_plasma_membrane_amount PR:000001865 ! interleukin-3 receptor class 2 alpha chain -intersection_of: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +intersection_of: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +intersection_of: RO:0015016 PR:000001865 ! has low plasma membrane amount interleukin-3 receptor class 2 alpha chain relationship: CL:4030046 PR:000001015 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RA relationship: CL:4030046 PR:000001836 ! lacks_plasma_membrane_part CD7 molecule relationship: CL:4030046 PR:000001867 ! lacks_plasma_membrane_part interleukin-5 receptor subunit alpha relationship: CL:4030046 PR:000001898 ! lacks_plasma_membrane_part neprilysin relationship: develops_from CL:0002043 ! CD34-positive, CD38-negative multipotent progenitor cell -relationship: has_low_plasma_membrane_amount PR:000001865 ! interleukin-3 receptor class 2 alpha chain -relationship: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +relationship: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +relationship: RO:0015016 PR:000001865 ! has low plasma membrane amount interleukin-3 receptor class 2 alpha chain [Term] id: CL:0001027 @@ -20873,14 +20989,15 @@ comment: These markers are associated with human cells. Originally described in synonym: "CD7-negative lymphoid precursor" EXACT [] is_a: CL:0000051 {is_inferred="true"} ! common lymphoid progenitor is_a: CL:0001012 ! CD7-negative lymphoid progenitor OR granulocyte monocyte progenitor +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000051 ! common lymphoid progenitor intersection_of: CL:4030046 PR:000001015 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RA intersection_of: CL:4030046 PR:000001836 ! lacks_plasma_membrane_part CD7 molecule -intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule +intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule relationship: CL:4030046 PR:000001015 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RA relationship: CL:4030046 PR:000001836 ! lacks_plasma_membrane_part CD7 molecule relationship: develops_from CL:0001021 ! CD34-positive, CD38-positive common lymphoid progenitor -relationship: has_plasma_membrane_part PR:000001003 ! CD34 molecule +relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule [Term] id: CL:0001028 @@ -20889,14 +21006,15 @@ def: "CD7-positive lymphoid progenitor cell is a lymphoid progenitor cell that i comment: These markers are associated with human cells. Originally described in the dendritic cell ontology (DC_CL:0000040)(PMID:19243617). synonym: "CD7-positive lymphoid precursor" EXACT [] is_a: CL:0000051 {is_inferred="true"} ! common lymphoid progenitor +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000051 ! common lymphoid progenitor intersection_of: CL:4030046 PR:000001015 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RA -intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule -intersection_of: has_plasma_membrane_part PR:000001836 ! CD7 molecule +intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +intersection_of: RO:0002104 PR:000001836 ! has plasma membrane part CD7 molecule relationship: CL:4030046 PR:000001015 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RA relationship: develops_from CL:0001027 ! CD7-negative lymphoid progenitor cell -relationship: has_plasma_membrane_part PR:000001003 ! CD34 molecule -relationship: has_plasma_membrane_part PR:000001836 ! CD7 molecule +relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +relationship: RO:0002104 PR:000001836 ! has plasma membrane part CD7 molecule [Term] id: CL:0001029 @@ -20909,6 +21027,7 @@ synonym: "common dendritic precursor" EXACT [] synonym: "pro-DCs" EXACT [PMID:21219184] is_a: CL:0000763 ! myeloid cell is_a: CL:0001019 ! CD115-positive monocyte OR common dendritic progenitor +is_a: PR:000050567 ! obsolete protein-containing material entity is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: CL:0002031 ! hematopoietic lineage restricted progenitor cell intersection_of: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule @@ -20923,9 +21042,9 @@ intersection_of: CL:4030046 PR:000001839 ! lacks_plasma_membrane_part T-cell sur intersection_of: CL:4030046 PR:000001889 ! lacks_plasma_membrane_part CD14 molecule intersection_of: CL:4030046 PR:000002978 ! lacks_plasma_membrane_part lymphocyte antigen 6G intersection_of: CL:4030046 PR:000002981 ! lacks_plasma_membrane_part lymphocyte antigen 76 (mouse) -intersection_of: has_low_plasma_membrane_amount PR:000002065 ! mast/stem cell growth factor receptor -intersection_of: has_plasma_membrane_part PR:000002001 ! receptor-type tyrosine-protein kinase FLT3 -intersection_of: has_plasma_membrane_part PR:000002062 ! macrophage colony-stimulating factor 1 receptor +intersection_of: RO:0002104 PR:000002001 ! has plasma membrane part receptor-type tyrosine-protein kinase FLT3 +intersection_of: RO:0002104 PR:000002062 ! has plasma membrane part macrophage colony-stimulating factor 1 receptor +intersection_of: RO:0015016 PR:000002065 ! has low plasma membrane amount mast/stem cell growth factor receptor relationship: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule relationship: CL:4030046 PR:000001004 ! lacks_plasma_membrane_part CD4 molecule relationship: CL:4030046 PR:000001012 ! lacks_plasma_membrane_part integrin alpha-M @@ -20939,9 +21058,9 @@ relationship: CL:4030046 PR:000001889 ! lacks_plasma_membrane_part CD14 molecule relationship: CL:4030046 PR:000002978 ! lacks_plasma_membrane_part lymphocyte antigen 6G relationship: CL:4030046 PR:000002981 ! lacks_plasma_membrane_part lymphocyte antigen 76 (mouse) relationship: develops_from CL:0002009 ! macrophage dendritic cell progenitor -relationship: has_low_plasma_membrane_amount PR:000002065 ! mast/stem cell growth factor receptor -relationship: has_plasma_membrane_part PR:000002001 ! receptor-type tyrosine-protein kinase FLT3 -relationship: has_plasma_membrane_part PR:000002062 ! macrophage colony-stimulating factor 1 receptor +relationship: RO:0002104 PR:000002001 ! has plasma membrane part receptor-type tyrosine-protein kinase FLT3 +relationship: RO:0002104 PR:000002062 ! has plasma membrane part macrophage colony-stimulating factor 1 receptor +relationship: RO:0015016 PR:000002065 ! has low plasma membrane amount mast/stem cell growth factor receptor [Term] id: CL:0001030 @@ -20962,10 +21081,10 @@ xref: BTO:0004278 is_a: CL:0000120 ! granule cell is_a: CL:2000028 ! cerebellum glutamatergic neuron intersection_of: CL:0000120 ! granule cell -intersection_of: has_soma_location UBERON:0002037 ! cerebellum +intersection_of: RO:0002100 UBERON:0002037 ! has soma location cerebellum relationship: develops_from CL:0002362 ! cerebellar granule cell precursor relationship: directly_develops_from CL:0002362 ! cerebellar granule cell precursor -relationship: has_soma_location UBERON:0002037 ! cerebellum +relationship: RO:0002100 UBERON:0002037 ! has soma location cerebellum [Term] id: CL:0001032 @@ -20975,8 +21094,8 @@ is_a: CL:0000120 ! granule cell is_a: CL:0010012 ! cerebral cortex neuron is_a: CL:0012001 ! neuron of the forebrain intersection_of: CL:0000120 ! granule cell -intersection_of: has_soma_location UBERON:0000956 ! cerebral cortex -relationship: has_soma_location UBERON:0000956 ! cerebral cortex +intersection_of: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex +relationship: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex [Term] id: CL:0001033 @@ -20985,8 +21104,8 @@ def: "Granule cell with a soma found in the hippocampus." [GOC:mah] is_a: CL:0001032 ! cortical granule cell is_a: CL:0002608 ! hippocampal neuron intersection_of: CL:0000120 ! granule cell -intersection_of: has_soma_location UBERON:0002421 ! hippocampal formation -relationship: has_soma_location UBERON:0002421 ! hippocampal formation +intersection_of: RO:0002100 UBERON:0002421 ! has soma location hippocampal formation +relationship: RO:0002100 UBERON:0002421 ! has soma location hippocampal formation [Term] id: CL:0001035 @@ -20994,7 +21113,7 @@ name: bone cell def: "A connective tissue cell found in bone." [GO_REF:0000034, GOC:add] subset: general_cell_types_upper_slim subset: human_reference_atlas -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000000 ! cell intersection_of: part_of UBERON:0001474 ! bone element relationship: dc-contributor https://orcid.org/0000-0001-9990-8331 @@ -21039,16 +21158,17 @@ subset: cellxgene_subset subset: human_reference_atlas synonym: "monocyte" NARROW [PMID:22343568] is_a: CL:0000576 ! monocyte +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000576 ! monocyte intersection_of: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule intersection_of: CL:4030046 PR:000001020 ! lacks_plasma_membrane_part CD3 epsilon intersection_of: CL:4030046 PR:000001289 ! lacks_plasma_membrane_part membrane-spanning 4-domains subfamily A member 1 -intersection_of: has_plasma_membrane_part PR:000001889 ! CD14 molecule +intersection_of: RO:0002104 PR:000001889 ! has plasma membrane part CD14 molecule relationship: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule relationship: CL:4030046 PR:000001020 ! lacks_plasma_membrane_part CD3 epsilon relationship: CL:4030046 PR:000001289 ! lacks_plasma_membrane_part membrane-spanning 4-domains subfamily A member 1 -relationship: has_plasma_membrane_part PR:000001889 ! CD14 molecule relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:000001889 ! has plasma membrane part CD14 molecule [Term] id: CL:0001055 @@ -21060,11 +21180,11 @@ synonym: "intermediate monocyte, human" EXACT [] is_a: CL:0002393 ! intermediate monocyte is_a: CL:0002397 ! CD14-positive, CD16-positive monocyte intersection_of: CL:0002393 ! intermediate monocyte -intersection_of: has_low_plasma_membrane_amount PR:000001483 ! low affinity immunoglobulin gamma Fc region receptor III -intersection_of: has_plasma_membrane_part PR:000001889 ! CD14 molecule -relationship: has_low_plasma_membrane_amount PR:000001483 ! low affinity immunoglobulin gamma Fc region receptor III -relationship: has_plasma_membrane_part PR:000001889 ! CD14 molecule +intersection_of: RO:0002104 PR:000001889 ! has plasma membrane part CD14 molecule +intersection_of: RO:0015016 PR:000001483 ! has low plasma membrane amount low affinity immunoglobulin gamma Fc region receptor III relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:000001889 ! has plasma membrane part CD14 molecule +relationship: RO:0015016 PR:000001483 ! has low plasma membrane amount low affinity immunoglobulin gamma Fc region receptor III [Term] id: CL:0001059 @@ -21081,6 +21201,7 @@ synonym: "myeloid stem cell" RELATED [ISBN:0878932437] synonym: "pluripotent stem cell (bone marrow)" RELATED [ISBN:0878932437] is_a: CL:0000049 ! common myeloid progenitor is_a: CL:0011026 ! progenitor cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000049 ! common myeloid progenitor intersection_of: capable_of GO:0002573 ! myeloid leukocyte differentiation intersection_of: capable_of GO:0043011 ! myeloid dendritic cell differentiation @@ -21088,14 +21209,14 @@ intersection_of: has_part PR:000001944 ! transcription factor PU.1 intersection_of: has_part PR:000005307 ! CCAAT/enhancer-binding protein alpha intersection_of: has_part PR:000007857 ! erythroid transcription factor intersection_of: has_part PR:000007858 ! endothelial transcription factor GATA-2 -intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule +intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule relationship: capable_of GO:0002573 ! myeloid leukocyte differentiation relationship: capable_of GO:0043011 ! myeloid dendritic cell differentiation relationship: has_part PR:000001944 ! transcription factor PU.1 relationship: has_part PR:000005307 ! CCAAT/enhancer-binding protein alpha relationship: has_part PR:000007857 ! erythroid transcription factor relationship: has_part PR:000007858 ! endothelial transcription factor GATA-2 -relationship: has_plasma_membrane_part PR:000001003 ! CD34 molecule +relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule [Term] id: CL:0001060 @@ -21115,7 +21236,7 @@ intersection_of: CL:4030046 PR:000001839 ! lacks_plasma_membrane_part T-cell sur intersection_of: CL:4030046 PR:000001889 ! lacks_plasma_membrane_part CD14 molecule intersection_of: CL:4030046 PR:000002978 ! lacks_plasma_membrane_part lymphocyte antigen 6G intersection_of: CL:4030046 PR:000002981 ! lacks_plasma_membrane_part lymphocyte antigen 76 (mouse) -intersection_of: has_characteristic PATO:0001401 ! oligopotent +intersection_of: RO:0000053 PATO:0001401 ! has characteristic oligopotent relationship: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule relationship: CL:4030046 PR:000001004 ! lacks_plasma_membrane_part CD4 molecule relationship: CL:4030046 PR:000001012 ! lacks_plasma_membrane_part integrin alpha-M @@ -21129,7 +21250,7 @@ relationship: CL:4030046 PR:000001889 ! lacks_plasma_membrane_part CD14 molecule relationship: CL:4030046 PR:000002978 ! lacks_plasma_membrane_part lymphocyte antigen 6G relationship: CL:4030046 PR:000002981 ! lacks_plasma_membrane_part lymphocyte antigen 76 (mouse) relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_characteristic PATO:0001401 ! oligopotent +relationship: RO:0000053 PATO:0001401 ! has characteristic oligopotent creation_date: 2010-01-06T03:43:27Z [Term] @@ -21166,6 +21287,7 @@ synonym: "colony forming unit erythroid" RELATED [] synonym: "erythroid stem cell" RELATED [] xref: BTO:0004911 is_a: CL:0000038 ! erythroid progenitor cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000038 ! erythroid progenitor cell intersection_of: capable_of GO:0030218 ! erythrocyte differentiation intersection_of: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule @@ -21179,7 +21301,7 @@ intersection_of: CL:4030046 PR:000001289 ! lacks_plasma_membrane_part membrane-s intersection_of: CL:4030046 PR:000001839 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD5 intersection_of: CL:4030046 PR:000001889 ! lacks_plasma_membrane_part CD14 molecule intersection_of: CL:4030046 PR:000002978 ! lacks_plasma_membrane_part lymphocyte antigen 6G -intersection_of: has_plasma_membrane_part PR:000001945 ! transferrin receptor protein 1 +intersection_of: RO:0002104 PR:000001945 ! has plasma membrane part transferrin receptor protein 1 relationship: capable_of GO:0030218 ! erythrocyte differentiation relationship: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule relationship: CL:4030046 PR:000001004 ! lacks_plasma_membrane_part CD4 molecule @@ -21192,7 +21314,7 @@ relationship: CL:4030046 PR:000001289 ! lacks_plasma_membrane_part membrane-span relationship: CL:4030046 PR:000001839 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD5 relationship: CL:4030046 PR:000001889 ! lacks_plasma_membrane_part CD14 molecule relationship: CL:4030046 PR:000002978 ! lacks_plasma_membrane_part lymphocyte antigen 6G -relationship: has_plasma_membrane_part PR:000001945 ! transferrin receptor protein 1 +relationship: RO:0002104 PR:000001945 ! has plasma membrane part transferrin receptor protein 1 [Term] id: CL:0001067 @@ -21215,16 +21337,17 @@ synonym: "CD34-negative, CD117-positive ILC" EXACT [] synonym: "CD34-negative, CD117-positive ILCP" EXACT [] synonym: "CD34-negative, CD117-positive innate lymphoid cell precusor" EXACT [] is_a: CL:0001082 ! immature innate lymphoid cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0001065 ! innate lymphoid cell intersection_of: CL:4030046 PR:P28906 ! lacks_plasma_membrane_part hematopoietic progenitor cell antigen CD34 (human) -intersection_of: has_characteristic PATO:0001501 ! immature -intersection_of: has_plasma_membrane_part PR:P10721 ! mast/stem cell growth factor receptor Kit (human) intersection_of: in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0000053 PATO:0001501 ! has characteristic immature +intersection_of: RO:0002104 PR:P10721 ! has plasma membrane part mast/stem cell growth factor receptor Kit (human) relationship: CL:4030046 PR:P28906 ! lacks_plasma_membrane_part hematopoietic progenitor cell antigen CD34 (human) relationship: develops_from CL:0001074 ! CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human -relationship: has_characteristic PATO:0001501 ! immature -relationship: has_plasma_membrane_part PR:P10721 ! mast/stem cell growth factor receptor Kit (human) relationship: in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0000053 PATO:0001501 ! has characteristic immature +relationship: RO:0002104 PR:P10721 ! has plasma membrane part mast/stem cell growth factor receptor Kit (human) [Term] id: CL:0001073 @@ -21235,12 +21358,12 @@ synonym: "CD34-negative, CD56-positive, CD117-positive ILCP" EXACT [] synonym: "CD34-negative, CD56-positive, CD117-positive innate lymphoid cell precursor" EXACT [] is_a: CL:0001072 ! CD34-negative, CD117-positive innate lymphoid cell, human intersection_of: CL:0001072 ! CD34-negative, CD117-positive innate lymphoid cell, human -intersection_of: has_plasma_membrane_part PR:P10721 ! mast/stem cell growth factor receptor Kit (human) -intersection_of: has_plasma_membrane_part PR:P13591 ! neural cell adhesion molecule 1 (human) intersection_of: in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: has_plasma_membrane_part PR:P10721 ! mast/stem cell growth factor receptor Kit (human) -relationship: has_plasma_membrane_part PR:P13591 ! neural cell adhesion molecule 1 (human) +intersection_of: RO:0002104 PR:P10721 ! has plasma membrane part mast/stem cell growth factor receptor Kit (human) +intersection_of: RO:0002104 PR:P13591 ! has plasma membrane part neural cell adhesion molecule 1 (human) relationship: in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:P10721 ! has plasma membrane part mast/stem cell growth factor receptor Kit (human) +relationship: RO:0002104 PR:P13591 ! has plasma membrane part neural cell adhesion molecule 1 (human) [Term] id: CL:0001074 @@ -21249,17 +21372,18 @@ def: "An innate lymphoid cell precursor in the human with the phenotype CD34-pos subset: cellxgene_subset synonym: "CD34-positive, CD56-positive, CD117-positive CILP" EXACT [] is_a: CL:0001082 ! immature innate lymphoid cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0001065 ! innate lymphoid cell -intersection_of: has_characteristic PATO:0001501 ! immature -intersection_of: has_plasma_membrane_part PR:P10721 ! mast/stem cell growth factor receptor Kit (human) -intersection_of: has_plasma_membrane_part PR:P13591 ! neural cell adhesion molecule 1 (human) -intersection_of: has_plasma_membrane_part PR:P28906 ! hematopoietic progenitor cell antigen CD34 (human) intersection_of: in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: has_characteristic PATO:0001501 ! immature -relationship: has_plasma_membrane_part PR:P10721 ! mast/stem cell growth factor receptor Kit (human) -relationship: has_plasma_membrane_part PR:P13591 ! neural cell adhesion molecule 1 (human) -relationship: has_plasma_membrane_part PR:P28906 ! hematopoietic progenitor cell antigen CD34 (human) +intersection_of: RO:0000053 PATO:0001501 ! has characteristic immature +intersection_of: RO:0002104 PR:P10721 ! has plasma membrane part mast/stem cell growth factor receptor Kit (human) +intersection_of: RO:0002104 PR:P13591 ! has plasma membrane part neural cell adhesion molecule 1 (human) +intersection_of: RO:0002104 PR:P28906 ! has plasma membrane part hematopoietic progenitor cell antigen CD34 (human) relationship: in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0000053 PATO:0001501 ! has characteristic immature +relationship: RO:0002104 PR:P10721 ! has plasma membrane part mast/stem cell growth factor receptor Kit (human) +relationship: RO:0002104 PR:P13591 ! has plasma membrane part neural cell adhesion molecule 1 (human) +relationship: RO:0002104 PR:P28906 ! has plasma membrane part hematopoietic progenitor cell antigen CD34 (human) [Term] id: CL:0001082 @@ -21269,8 +21393,8 @@ subset: cellxgene_subset synonym: "immature ILC" EXACT [] is_a: CL:0001065 ! innate lymphoid cell intersection_of: CL:0001065 ! innate lymphoid cell -intersection_of: has_characteristic PATO:0001501 ! immature -relationship: has_characteristic PATO:0001501 ! immature +intersection_of: RO:0000053 PATO:0001501 ! has characteristic immature +relationship: RO:0000053 PATO:0001501 ! has characteristic immature [Term] id: CL:0001200 @@ -21278,14 +21402,15 @@ name: lymphocyte of B lineage, CD19-positive def: "A lymphocyte of B lineage that is CD19-positive." [GOC:add] comment: Types of B lineage lymphocytes include B cells and antibody secreting cells (plasmablasts and plasma cells). Lymphocytes of B cell lineage can be distinguished from those of T cell lineage by their lack of CD3e (as part of the T cell receptor complex). is_a: CL:0000945 ! lymphocyte of B lineage +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000945 ! lymphocyte of B lineage intersection_of: CL:4030046 PR:000001020 ! lacks_plasma_membrane_part CD3 epsilon -intersection_of: has_plasma_membrane_part PR:000001002 ! CD19 molecule intersection_of: in_taxon NCBITaxon:40674 ! Mammalia +intersection_of: RO:0002104 PR:000001002 ! has plasma membrane part CD19 molecule relationship: CL:4030046 PR:000001020 ! lacks_plasma_membrane_part CD3 epsilon relationship: dc-contributor https://orcid.org/0000-0001-9990-8331 -relationship: has_plasma_membrane_part PR:000001002 ! CD19 molecule relationship: in_taxon NCBITaxon:40674 ! Mammalia +relationship: RO:0002104 PR:000001002 ! has plasma membrane part CD19 molecule [Term] id: CL:0001201 @@ -21300,12 +21425,10 @@ is_a: CL:0000236 ! B cell is_a: CL:0001200 ! lymphocyte of B lineage, CD19-positive intersection_of: CL:0001200 ! lymphocyte of B lineage, CD19-positive intersection_of: capable_of GO:0019724 ! B cell mediated immunity -intersection_of: has_plasma_membrane_part PR:000001002 ! CD19 molecule -intersection_of: in_taxon NCBITaxon:40674 ! Mammalia +intersection_of: RO:0002104 PR:000001002 ! has plasma membrane part CD19 molecule relationship: capable_of GO:0019724 ! B cell mediated immunity relationship: dc-contributor https://orcid.org/0000-0001-9990-8331 -relationship: has_plasma_membrane_part PR:000001002 ! CD19 molecule -relationship: in_taxon NCBITaxon:40674 ! Mammalia +relationship: RO:0002104 PR:000001002 ! has plasma membrane part CD19 molecule [Term] id: CL:0002000 @@ -21321,8 +21444,8 @@ intersection_of: CL:4030046 PR:000001865 ! lacks_plasma_membrane_part interleuki intersection_of: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 receptor subunit alpha intersection_of: CL:4030046 PR:000002979 ! lacks_plasma_membrane_part lymphocyte antigen 6A-2/6E-1 intersection_of: CL:4030046 PR:000009127 ! lacks_plasma_membrane_part integrin alpha-IIb -intersection_of: has_plasma_membrane_part PR:000001345 ! endoglin -intersection_of: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor +intersection_of: RO:0002104 PR:000001345 ! has plasma membrane part endoglin +intersection_of: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor relationship: CL:4030046 GO:0033001 ! lacks_plasma_membrane_part Fc-gamma receptor III complex relationship: CL:4030046 PR:000001833 ! lacks_plasma_membrane_part SLAM family member 1 relationship: CL:4030046 PR:000001865 ! lacks_plasma_membrane_part interleukin-3 receptor class 2 alpha chain @@ -21331,8 +21454,8 @@ relationship: CL:4030046 PR:000002979 ! lacks_plasma_membrane_part lymphocyte an relationship: CL:4030046 PR:000009127 ! lacks_plasma_membrane_part integrin alpha-IIb relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002006 ! Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell -relationship: has_plasma_membrane_part PR:000001345 ! endoglin -relationship: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor +relationship: RO:0002104 PR:000001345 ! has plasma membrane part endoglin +relationship: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor creation_date: 2010-04-26T10:14:16Z [Term] @@ -21342,14 +21465,14 @@ def: "A granulocyte monocyte progenitor is CD34-positive, CD38-positive, IL-3rec comment: Markers are for human cells. According to different research groups, CD45RA is present or absent on this cell population. is_a: CL:0000557 {is_inferred="true"} ! granulocyte monocyte progenitor cell intersection_of: CL:0000557 ! granulocyte monocyte progenitor cell -intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule -intersection_of: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -intersection_of: has_plasma_membrane_part PR:000001865 ! interleukin-3 receptor class 2 alpha chain +intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +intersection_of: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +intersection_of: RO:0002104 PR:000001865 ! has plasma membrane part interleukin-3 receptor class 2 alpha chain relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0001026 ! CD34-positive, CD38-positive common myeloid progenitor -relationship: has_plasma_membrane_part PR:000001003 ! CD34 molecule -relationship: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -relationship: has_plasma_membrane_part PR:000001865 ! interleukin-3 receptor class 2 alpha chain +relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +relationship: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +relationship: RO:0002104 PR:000001865 ! has plasma membrane part interleukin-3 receptor class 2 alpha chain creation_date: 2010-01-13T03:19:22Z [Term] @@ -21363,20 +21486,20 @@ intersection_of: CL:4030046 PR:000001206 ! lacks_plasma_membrane_part CX3C chemo intersection_of: CL:4030046 PR:000001843 ! lacks_plasma_membrane_part Thy-1 membrane glycoprotein intersection_of: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 receptor subunit alpha intersection_of: CL:4030046 PR:000002979 ! lacks_plasma_membrane_part lymphocyte antigen 6A-2/6E-1 -intersection_of: has_high_plasma_membrane_amount GO:0033001 ! Fc-gamma receptor III complex -intersection_of: has_high_plasma_membrane_amount PR:000001479 ! low affinity immunoglobulin gamma Fc region receptor II -intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule -intersection_of: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor +intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +intersection_of: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor +intersection_of: RO:0015015 GO:0033001 ! has high plasma membrane amount Fc-gamma receptor III complex +intersection_of: RO:0015015 PR:000001479 ! has high plasma membrane amount low affinity immunoglobulin gamma Fc region receptor II relationship: CL:4030046 PR:000001206 ! lacks_plasma_membrane_part CX3C chemokine receptor 1 relationship: CL:4030046 PR:000001843 ! lacks_plasma_membrane_part Thy-1 membrane glycoprotein relationship: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 receptor subunit alpha relationship: CL:4030046 PR:000002979 ! lacks_plasma_membrane_part lymphocyte antigen 6A-2/6E-1 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0001023 ! Kit-positive, CD34-positive common myeloid progenitor -relationship: has_high_plasma_membrane_amount GO:0033001 ! Fc-gamma receptor III complex -relationship: has_high_plasma_membrane_amount PR:000001479 ! low affinity immunoglobulin gamma Fc region receptor II -relationship: has_plasma_membrane_part PR:000001003 ! CD34 molecule -relationship: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor +relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +relationship: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor +relationship: RO:0015015 GO:0033001 ! has high plasma membrane amount Fc-gamma receptor III complex +relationship: RO:0015015 PR:000001479 ! has high plasma membrane amount low affinity immunoglobulin gamma Fc region receptor II creation_date: 2010-01-13T03:19:28Z [Term] @@ -21388,11 +21511,11 @@ xref: FMA:83517 is_a: CL:0001066 {is_inferred="true"} ! erythroid progenitor cell, mammalian intersection_of: CL:0001066 ! erythroid progenitor cell, mammalian intersection_of: CL:4030046 PR:000001460 ! lacks_plasma_membrane_part glycophorin-A -intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule +intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule relationship: CL:4030046 PR:000001460 ! lacks_plasma_membrane_part glycophorin-A relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002005 ! CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell -relationship: has_plasma_membrane_part PR:000001003 ! CD34 molecule +relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule creation_date: 2010-04-26T10:14:30Z [Term] @@ -21416,16 +21539,17 @@ name: CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell def: "A megakaryocyte erythroid progenitor cell is CD34-positive, CD38-positive and is IL3-receptor alpha-negative and CD45RA-negative." [GOC:tfm, PMID:12615892, PMID:190227700] comment: Markers are associated with human cell type. is_a: CL:0000050 {is_inferred="true"} ! megakaryocyte-erythroid progenitor cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000050 ! megakaryocyte-erythroid progenitor cell intersection_of: CL:4030046 PR:000001015 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RA intersection_of: CL:4030046 PR:000001865 ! lacks_plasma_membrane_part interleukin-3 receptor class 2 alpha chain -intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule -intersection_of: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +intersection_of: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 relationship: CL:4030046 PR:000001015 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RA relationship: CL:4030046 PR:000001865 ! lacks_plasma_membrane_part interleukin-3 receptor class 2 alpha chain relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_plasma_membrane_part PR:000001003 ! CD34 molecule -relationship: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +relationship: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 creation_date: 2010-01-13T03:43:10Z [Term] @@ -21434,22 +21558,23 @@ name: Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell def: "A megakaryocyte erythroid progenitor cell that is Kit-positive and is Sca1-negative, CD34-negative, CD90-negative, IL7r-alpha-negative and Fcgr II/III-low." [GOC:tfm, http://www.immgen.org/index_content.html, PMID:12615892, PMID:19022770] comment: Markers are associated with mouse cells. is_a: CL:0000050 {is_inferred="true"} ! megakaryocyte-erythroid progenitor cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000050 ! megakaryocyte-erythroid progenitor cell intersection_of: CL:4030046 PR:000001003 ! lacks_plasma_membrane_part CD34 molecule intersection_of: CL:4030046 PR:000001479 ! lacks_plasma_membrane_part low affinity immunoglobulin gamma Fc region receptor II intersection_of: CL:4030046 PR:000001843 ! lacks_plasma_membrane_part Thy-1 membrane glycoprotein intersection_of: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 receptor subunit alpha intersection_of: CL:4030046 PR:000002979 ! lacks_plasma_membrane_part lymphocyte antigen 6A-2/6E-1 -intersection_of: has_low_plasma_membrane_amount GO:0033001 ! Fc-gamma receptor III complex -intersection_of: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor +intersection_of: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor +intersection_of: RO:0015016 GO:0033001 ! has low plasma membrane amount Fc-gamma receptor III complex relationship: CL:4030046 PR:000001003 ! lacks_plasma_membrane_part CD34 molecule relationship: CL:4030046 PR:000001479 ! lacks_plasma_membrane_part low affinity immunoglobulin gamma Fc region receptor II relationship: CL:4030046 PR:000001843 ! lacks_plasma_membrane_part Thy-1 membrane glycoprotein relationship: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 receptor subunit alpha relationship: CL:4030046 PR:000002979 ! lacks_plasma_membrane_part lymphocyte antigen 6A-2/6E-1 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_low_plasma_membrane_amount GO:0033001 ! Fc-gamma receptor III complex -relationship: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor +relationship: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor +relationship: RO:0015016 GO:0033001 ! has low plasma membrane amount Fc-gamma receptor III complex creation_date: 2010-01-13T03:43:12Z [Term] @@ -21478,17 +21603,18 @@ def: "A progenitor cell that can give rise to plasmacytoid and myeloid dendritic comment: Markers are associated with mouse cells. synonym: "murine MDP" EXACT [] is_a: CL:0002009 {is_inferred="true"} ! macrophage dendritic cell progenitor +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0002009 ! macrophage dendritic cell progenitor -intersection_of: has_high_plasma_membrane_amount PR:000002065 ! mast/stem cell growth factor receptor -intersection_of: has_plasma_membrane_part PR:000001206 ! CX3C chemokine receptor 1 -intersection_of: has_plasma_membrane_part PR:000002001 ! receptor-type tyrosine-protein kinase FLT3 -intersection_of: has_plasma_membrane_part PR:000002062 ! macrophage colony-stimulating factor 1 receptor +intersection_of: RO:0002104 PR:000001206 ! has plasma membrane part CX3C chemokine receptor 1 +intersection_of: RO:0002104 PR:000002001 ! has plasma membrane part receptor-type tyrosine-protein kinase FLT3 +intersection_of: RO:0002104 PR:000002062 ! has plasma membrane part macrophage colony-stimulating factor 1 receptor +intersection_of: RO:0015015 PR:000002065 ! has high plasma membrane amount mast/stem cell growth factor receptor relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002002 ! Kit-positive granulocyte monocyte progenitor -relationship: has_high_plasma_membrane_amount PR:000002065 ! mast/stem cell growth factor receptor -relationship: has_plasma_membrane_part PR:000001206 ! CX3C chemokine receptor 1 -relationship: has_plasma_membrane_part PR:000002001 ! receptor-type tyrosine-protein kinase FLT3 -relationship: has_plasma_membrane_part PR:000002062 ! macrophage colony-stimulating factor 1 receptor +relationship: RO:0002104 PR:000001206 ! has plasma membrane part CX3C chemokine receptor 1 +relationship: RO:0002104 PR:000002001 ! has plasma membrane part receptor-type tyrosine-protein kinase FLT3 +relationship: RO:0002104 PR:000002062 ! has plasma membrane part macrophage colony-stimulating factor 1 receptor +relationship: RO:0015015 PR:000002065 ! has high plasma membrane amount mast/stem cell growth factor receptor creation_date: 2010-01-26T02:43:40Z [Term] @@ -21500,16 +21626,16 @@ is_a: CL:0000547 {is_inferred="true"} ! proerythroblast intersection_of: CL:0000547 ! proerythroblast intersection_of: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 receptor subunit alpha intersection_of: CL:4030046 PR:000002979 ! lacks_plasma_membrane_part lymphocyte antigen 6A-2/6E-1 -intersection_of: has_high_plasma_membrane_amount PR:000001945 ! transferrin receptor protein 1 -intersection_of: has_low_plasma_membrane_amount PR:000002065 ! mast/stem cell growth factor receptor -intersection_of: has_plasma_membrane_part PR:000002981 ! lymphocyte antigen 76 (mouse) +intersection_of: RO:0002104 PR:000002981 ! has plasma membrane part lymphocyte antigen 76 (mouse) +intersection_of: RO:0015015 PR:000001945 ! has high plasma membrane amount transferrin receptor protein 1 +intersection_of: RO:0015016 PR:000002065 ! has low plasma membrane amount mast/stem cell growth factor receptor relationship: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 receptor subunit alpha relationship: CL:4030046 PR:000002979 ! lacks_plasma_membrane_part lymphocyte antigen 6A-2/6E-1 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002000 ! Kit-positive erythroid progenitor cell -relationship: has_high_plasma_membrane_amount PR:000001945 ! transferrin receptor protein 1 -relationship: has_low_plasma_membrane_amount PR:000002065 ! mast/stem cell growth factor receptor -relationship: has_plasma_membrane_part PR:000002981 ! lymphocyte antigen 76 (mouse) +relationship: RO:0002104 PR:000002981 ! has plasma membrane part lymphocyte antigen 76 (mouse) +relationship: RO:0015015 PR:000001945 ! has high plasma membrane amount transferrin receptor protein 1 +relationship: RO:0015016 PR:000002065 ! has low plasma membrane amount mast/stem cell growth factor receptor creation_date: 2010-04-26T10:31:56Z [Term] @@ -21520,11 +21646,11 @@ comment: Markers are associated with human cells. is_a: CL:0000549 {is_inferred="true"} ! basophilic erythroblast intersection_of: CL:0000549 ! basophilic erythroblast intersection_of: CL:4030046 PR:000001003 ! lacks_plasma_membrane_part CD34 molecule -intersection_of: has_plasma_membrane_part PR:000001460 ! glycophorin-A +intersection_of: RO:0002104 PR:000001460 ! has plasma membrane part glycophorin-A relationship: CL:4030046 PR:000001003 ! lacks_plasma_membrane_part CD34 molecule relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002004 ! CD34-negative, GlyA-negative proerythroblast -relationship: has_plasma_membrane_part PR:000001460 ! glycophorin-A +relationship: RO:0002104 PR:000001460 ! has plasma membrane part glycophorin-A creation_date: 2010-04-26T10:41:15Z [Term] @@ -21537,13 +21663,13 @@ intersection_of: CL:0000549 ! basophilic erythroblast intersection_of: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 receptor subunit alpha intersection_of: CL:4030046 PR:000002065 ! lacks_plasma_membrane_part mast/stem cell growth factor receptor intersection_of: CL:4030046 PR:000002979 ! lacks_plasma_membrane_part lymphocyte antigen 6A-2/6E-1 -intersection_of: has_high_plasma_membrane_amount PR:000002981 ! lymphocyte antigen 76 (mouse) +intersection_of: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) relationship: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 receptor subunit alpha relationship: CL:4030046 PR:000002065 ! lacks_plasma_membrane_part mast/stem cell growth factor receptor relationship: CL:4030046 PR:000002979 ! lacks_plasma_membrane_part lymphocyte antigen 6A-2/6E-1 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002012 ! Kit-low proerythroblast -relationship: has_high_plasma_membrane_amount PR:000002981 ! lymphocyte antigen 76 (mouse) +relationship: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) creation_date: 2010-04-26T10:41:22Z [Term] @@ -21556,13 +21682,13 @@ intersection_of: CL:0000550 ! polychromatophilic erythroblast intersection_of: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 receptor subunit alpha intersection_of: CL:4030046 PR:000002065 ! lacks_plasma_membrane_part mast/stem cell growth factor receptor intersection_of: CL:4030046 PR:000002979 ! lacks_plasma_membrane_part lymphocyte antigen 6A-2/6E-1 -intersection_of: has_high_plasma_membrane_amount PR:000002981 ! lymphocyte antigen 76 (mouse) +intersection_of: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) relationship: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 receptor subunit alpha relationship: CL:4030046 PR:000002065 ! lacks_plasma_membrane_part mast/stem cell growth factor receptor relationship: CL:4030046 PR:000002979 ! lacks_plasma_membrane_part lymphocyte antigen 6A-2/6E-1 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002014 ! Kit-negative, Ly-76 high basophilic erythroblast -relationship: has_high_plasma_membrane_amount PR:000002981 ! lymphocyte antigen 76 (mouse) +relationship: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) creation_date: 2010-04-26T10:53:11Z [Term] @@ -21572,12 +21698,12 @@ def: "A polychromatiic erythroblast that is Gly-A-positive and CD71-low." [GOC:a comment: Cell surface markers are associated with human cells. is_a: CL:0000550 {is_inferred="true"} ! polychromatophilic erythroblast intersection_of: CL:0000550 ! polychromatophilic erythroblast -intersection_of: has_low_plasma_membrane_amount PR:000001945 ! transferrin receptor protein 1 -intersection_of: has_plasma_membrane_part PR:000001460 ! glycophorin-A +intersection_of: RO:0002104 PR:000001460 ! has plasma membrane part glycophorin-A +intersection_of: RO:0015016 PR:000001945 ! has low plasma membrane amount transferrin receptor protein 1 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002013 ! GlyA-positive basophilic erythroblast -relationship: has_low_plasma_membrane_amount PR:000001945 ! transferrin receptor protein 1 -relationship: has_plasma_membrane_part PR:000001460 ! glycophorin-A +relationship: RO:0002104 PR:000001460 ! has plasma membrane part glycophorin-A +relationship: RO:0015016 PR:000001945 ! has low plasma membrane amount transferrin receptor protein 1 creation_date: 2010-04-26T10:53:16Z [Term] @@ -21586,19 +21712,20 @@ name: Kit-negative, Ly-76 high orthochromatophilic erythroblasts def: "An orthochromatophilic erythroblast that is ter119-high, CD71-low, and Kit-negative." [GOC:ak, GOC:tfm, PMID:19805084] comment: Cell surface markers associated with mouse cells. is_a: CL:0000552 {is_inferred="true"} ! orthochromatic erythroblast +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000552 ! orthochromatic erythroblast intersection_of: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 receptor subunit alpha intersection_of: CL:4030046 PR:000002065 ! lacks_plasma_membrane_part mast/stem cell growth factor receptor intersection_of: CL:4030046 PR:000002979 ! lacks_plasma_membrane_part lymphocyte antigen 6A-2/6E-1 -intersection_of: has_high_plasma_membrane_amount PR:000002981 ! lymphocyte antigen 76 (mouse) -intersection_of: has_low_plasma_membrane_amount PR:000001945 ! transferrin receptor protein 1 +intersection_of: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) +intersection_of: RO:0015016 PR:000001945 ! has low plasma membrane amount transferrin receptor protein 1 relationship: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 receptor subunit alpha relationship: CL:4030046 PR:000002065 ! lacks_plasma_membrane_part mast/stem cell growth factor receptor relationship: CL:4030046 PR:000002979 ! lacks_plasma_membrane_part lymphocyte antigen 6A-2/6E-1 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002015 ! Kit-negative, Ly-76 high polychromatophilic erythroblast -relationship: has_high_plasma_membrane_amount PR:000002981 ! lymphocyte antigen 76 (mouse) -relationship: has_low_plasma_membrane_amount PR:000001945 ! transferrin receptor protein 1 +relationship: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) +relationship: RO:0015016 PR:000001945 ! has low plasma membrane amount transferrin receptor protein 1 creation_date: 2010-04-26T11:04:15Z [Term] @@ -21607,13 +21734,14 @@ name: CD71-negative, GlyA-positive orthochromatic erythroblast def: "An erythroblast that is GlyA-positive and CD71-negative." [GOC:ak, GOC:tfm, PMID:1638021] comment: Markers associated with human cells. is_a: CL:0000552 {is_inferred="true"} ! orthochromatic erythroblast +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000552 ! orthochromatic erythroblast intersection_of: CL:4030046 PR:000001945 ! lacks_plasma_membrane_part transferrin receptor protein 1 -intersection_of: has_plasma_membrane_part PR:000001460 ! glycophorin-A +intersection_of: RO:0002104 PR:000001460 ! has plasma membrane part glycophorin-A relationship: CL:4030046 PR:000001945 ! lacks_plasma_membrane_part transferrin receptor protein 1 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002016 ! CD71-low, GlyA-positive polychromatic erythroblast -relationship: has_plasma_membrane_part PR:000001460 ! glycophorin-A +relationship: RO:0002104 PR:000001460 ! has plasma membrane part glycophorin-A creation_date: 2010-04-26T11:04:21Z [Term] @@ -21623,10 +21751,10 @@ def: "A reticulocyte that is Ly76-high and is Kit-negative." [GOC:ak, GOC:tfm, P comment: Marker associated with mouse cells. is_a: CL:0002422 {is_inferred="true"} ! enucleated reticulocyte intersection_of: CL:0002422 ! enucleated reticulocyte -intersection_of: has_high_plasma_membrane_amount PR:000002981 ! lymphocyte antigen 76 (mouse) +intersection_of: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002017 ! Kit-negative, Ly-76 high orthochromatophilic erythroblasts -relationship: has_high_plasma_membrane_amount PR:000002981 ! lymphocyte antigen 76 (mouse) +relationship: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) creation_date: 2010-04-26T11:37:00Z [Term] @@ -21636,10 +21764,10 @@ def: "A reticulocyte that is GlyA-positive." [GOC:ak, GOC:tfm, PMID:1638021] comment: Markers is associated with human cells. is_a: CL:0002422 {is_inferred="true"} ! enucleated reticulocyte intersection_of: CL:0002422 ! enucleated reticulocyte -intersection_of: has_plasma_membrane_part PR:000001460 ! glycophorin-A +intersection_of: RO:0002104 PR:000001460 ! has plasma membrane part glycophorin-A relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002018 ! CD71-negative, GlyA-positive orthochromatic erythroblast -relationship: has_plasma_membrane_part PR:000001460 ! glycophorin-A +relationship: RO:0002104 PR:000001460 ! has plasma membrane part glycophorin-A creation_date: 2010-04-26T11:48:25Z [Term] @@ -21648,11 +21776,12 @@ name: GlyA-positive erythrocyte def: "An enucleate erythrocyte that is GlyA-positive." [GOC:ak, GOC:tfm, PMID:20134094] comment: Marker is associated with human cell types. is_a: CL:0000595 {is_inferred="true"} ! enucleate erythrocyte +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000595 ! enucleate erythrocyte -intersection_of: has_plasma_membrane_part PR:000001460 ! glycophorin-A +intersection_of: RO:0002104 PR:000001460 ! has plasma membrane part glycophorin-A relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002020 ! GlyA-positive reticulocytes -relationship: has_plasma_membrane_part PR:000001460 ! glycophorin-A +relationship: RO:0002104 PR:000001460 ! has plasma membrane part glycophorin-A creation_date: 2010-04-26T11:51:22Z [Term] @@ -21661,11 +21790,12 @@ name: Ly-76 high positive erythrocyte def: "An enucleate erythrocyte that is Lyg-76-high." [GOC:ak, GOC:tfm, PMID:19805084] comment: Marker is associated with mouse cell types. is_a: CL:0000595 {is_inferred="true"} ! enucleate erythrocyte +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000595 ! enucleate erythrocyte -intersection_of: has_high_plasma_membrane_amount PR:000002981 ! lymphocyte antigen 76 (mouse) +intersection_of: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002019 ! Ly-76 high reticulocyte -relationship: has_high_plasma_membrane_amount PR:000002981 ! lymphocyte antigen 76 (mouse) +relationship: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) creation_date: 2010-04-26T11:51:27Z [Term] @@ -21673,13 +21803,14 @@ id: CL:0002031 name: hematopoietic lineage restricted progenitor cell def: "A hematopoietic progenitor cell that is capable of developing into only one lineage of hematopoietic cells." [GOC:tfm, PMID:19022770] subset: blood_and_immune_upper_slim +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0008001 ! hematopoietic precursor cell intersection_of: CL:0000988 ! hematopoietic cell -intersection_of: has_characteristic PATO:0001400 ! unipotent +intersection_of: RO:0000053 PATO:0001400 ! has characteristic unipotent disjoint_from: CL:0002032 ! hematopoietic oligopotent progenitor cell relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002032 ! hematopoietic oligopotent progenitor cell -relationship: has_characteristic PATO:0001400 ! unipotent +relationship: RO:0000053 PATO:0001400 ! has characteristic unipotent creation_date: 2010-01-06T03:43:20Z [Term] @@ -21688,12 +21819,13 @@ name: hematopoietic oligopotent progenitor cell def: "A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities." [GOC:tfm, https://orcid.org/0000-0001-5208-3432, PMID:19022770] comment: This cell type is intended to be compatible with any vertebrate hematopoietic oligopotent progenitor cell. For mammalian hematopoietic oligopotent progenitor cells known to be lineage-negative, please use the term 'hematopoietic oligopotent progenitor cell' (CL_0001060). subset: blood_and_immune_upper_slim +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0008001 ! hematopoietic precursor cell intersection_of: CL:0000988 ! hematopoietic cell -intersection_of: has_characteristic PATO:0001401 ! oligopotent +intersection_of: RO:0000053 PATO:0001401 ! has characteristic oligopotent relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0000837 ! hematopoietic multipotent progenitor cell -relationship: has_characteristic PATO:0001401 ! oligopotent +relationship: RO:0000053 PATO:0001401 ! has characteristic oligopotent creation_date: 2010-01-06T03:43:27Z [Term] @@ -21706,13 +21838,13 @@ synonym: "ST-HSC" EXACT [] is_a: CL:0001008 {is_inferred="true"} ! Kit and Sca1-positive hematopoietic stem cell intersection_of: CL:0001008 ! Kit and Sca1-positive hematopoietic stem cell intersection_of: CL:4030046 PR:000002001 ! lacks_plasma_membrane_part receptor-type tyrosine-protein kinase FLT3 -intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule -intersection_of: has_plasma_membrane_part PR:000001833 ! SLAM family member 1 +intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +intersection_of: RO:0002104 PR:000001833 ! has plasma membrane part SLAM family member 1 relationship: CL:4030046 PR:000002001 ! lacks_plasma_membrane_part receptor-type tyrosine-protein kinase FLT3 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002034 ! long term hematopoietic stem cell -relationship: has_plasma_membrane_part PR:000001003 ! CD34 molecule -relationship: has_plasma_membrane_part PR:000001833 ! SLAM family member 1 +relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +relationship: RO:0002104 PR:000001833 ! has plasma membrane part SLAM family member 1 creation_date: 2010-01-08T09:19:25Z [Term] @@ -21726,13 +21858,13 @@ is_a: CL:0001008 {is_inferred="true"} ! Kit and Sca1-positive hematopoietic stem intersection_of: CL:0001008 ! Kit and Sca1-positive hematopoietic stem cell intersection_of: CL:4030046 PR:000001003 ! lacks_plasma_membrane_part CD34 molecule intersection_of: CL:4030046 PR:000002001 ! lacks_plasma_membrane_part receptor-type tyrosine-protein kinase FLT3 -intersection_of: has_low_plasma_membrane_amount PR:000001843 ! Thy-1 membrane glycoprotein -intersection_of: has_plasma_membrane_part PR:000001833 ! SLAM family member 1 +intersection_of: RO:0002104 PR:000001833 ! has plasma membrane part SLAM family member 1 +intersection_of: RO:0015016 PR:000001843 ! has low plasma membrane amount Thy-1 membrane glycoprotein relationship: CL:4030046 PR:000001003 ! lacks_plasma_membrane_part CD34 molecule relationship: CL:4030046 PR:000002001 ! lacks_plasma_membrane_part receptor-type tyrosine-protein kinase FLT3 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_low_plasma_membrane_amount PR:000001843 ! Thy-1 membrane glycoprotein -relationship: has_plasma_membrane_part PR:000001833 ! SLAM family member 1 +relationship: RO:0002104 PR:000001833 ! has plasma membrane part SLAM family member 1 +relationship: RO:0015016 PR:000001843 ! has low plasma membrane amount Thy-1 membrane glycoprotein creation_date: 2010-01-08T09:19:28Z [Term] @@ -21744,14 +21876,14 @@ is_a: CL:0000837 {is_inferred="true"} ! hematopoietic multipotent progenitor cel intersection_of: CL:0000837 ! hematopoietic multipotent progenitor cell intersection_of: CL:4030046 PR:000001833 ! lacks_plasma_membrane_part SLAM family member 1 intersection_of: CL:4030046 PR:000002001 ! lacks_plasma_membrane_part receptor-type tyrosine-protein kinase FLT3 -intersection_of: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor -intersection_of: has_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 +intersection_of: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor +intersection_of: RO:0002104 PR:000002979 ! has plasma membrane part lymphocyte antigen 6A-2/6E-1 relationship: CL:4030046 PR:000001833 ! lacks_plasma_membrane_part SLAM family member 1 relationship: CL:4030046 PR:000002001 ! lacks_plasma_membrane_part receptor-type tyrosine-protein kinase FLT3 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002036 ! Slamf1-positive multipotent progenitor cell -relationship: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor -relationship: has_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 +relationship: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor +relationship: RO:0002104 PR:000002979 ! has plasma membrane part lymphocyte antigen 6A-2/6E-1 creation_date: 2010-01-08T11:16:33Z [Term] @@ -21762,15 +21894,15 @@ comment: Markers are associated with mouse cells. synonym: "KSL cell" EXACT [] is_a: CL:0000837 {is_inferred="true"} ! hematopoietic multipotent progenitor cell intersection_of: CL:0000837 ! hematopoietic multipotent progenitor cell -intersection_of: has_plasma_membrane_part PR:000001833 ! SLAM family member 1 -intersection_of: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor -intersection_of: has_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 +intersection_of: RO:0002104 PR:000001833 ! has plasma membrane part SLAM family member 1 +intersection_of: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor +intersection_of: RO:0002104 PR:000002979 ! has plasma membrane part lymphocyte antigen 6A-2/6E-1 disjoint_from: CL:0002043 ! CD34-positive, CD38-negative multipotent progenitor cell relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002033 ! short term hematopoietic stem cell -relationship: has_plasma_membrane_part PR:000001833 ! SLAM family member 1 -relationship: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor -relationship: has_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 +relationship: RO:0002104 PR:000001833 ! has plasma membrane part SLAM family member 1 +relationship: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor +relationship: RO:0002104 PR:000002979 ! has plasma membrane part lymphocyte antigen 6A-2/6E-1 creation_date: 2010-01-08T11:16:35Z [Term] @@ -21783,13 +21915,13 @@ intersection_of: CL:0000837 ! hematopoietic multipotent progenitor cell intersection_of: CL:4030046 PR:000001015 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RA intersection_of: CL:4030046 PR:000001408 ! lacks_plasma_membrane_part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 intersection_of: CL:4030046 PR:000001843 ! lacks_plasma_membrane_part Thy-1 membrane glycoprotein -intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule +intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule relationship: CL:4030046 PR:000001015 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RA relationship: CL:4030046 PR:000001408 ! lacks_plasma_membrane_part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 relationship: CL:4030046 PR:000001843 ! lacks_plasma_membrane_part Thy-1 membrane glycoprotein relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0001024 ! CD34-positive, CD38-negative hematopoietic stem cell -relationship: has_plasma_membrane_part PR:000001003 ! CD34 molecule +relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule creation_date: 2010-01-12T11:14:15Z [Term] @@ -21804,19 +21936,19 @@ is_a: CL:0000826 {is_inferred="true"} ! pro-B cell intersection_of: CL:0000826 ! pro-B cell intersection_of: CL:4030046 PR:000002039 ! lacks_plasma_membrane_part glutamyl aminopeptidase intersection_of: CL:4030046 PR:000002980 ! lacks_plasma_membrane_part lymphocyte antigen 6C2 -intersection_of: has_low_plasma_membrane_amount PR:000001932 ! signal transducer CD24 -intersection_of: has_plasma_membrane_part PR:000001015 ! receptor-type tyrosine-protein phosphatase C isoform CD45RA -intersection_of: has_plasma_membrane_part PR:000001879 ! leukosialin -intersection_of: has_plasma_membrane_part PR:000002037 ! complement component C1q receptor -intersection_of: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor +intersection_of: RO:0002104 PR:000001015 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RA +intersection_of: RO:0002104 PR:000001879 ! has plasma membrane part leukosialin +intersection_of: RO:0002104 PR:000002037 ! has plasma membrane part complement component C1q receptor +intersection_of: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor +intersection_of: RO:0015016 PR:000001932 ! has low plasma membrane amount signal transducer CD24 relationship: CL:4030046 PR:000002039 ! lacks_plasma_membrane_part glutamyl aminopeptidase relationship: CL:4030046 PR:000002980 ! lacks_plasma_membrane_part lymphocyte antigen 6C2 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_low_plasma_membrane_amount PR:000001932 ! signal transducer CD24 -relationship: has_plasma_membrane_part PR:000001015 ! receptor-type tyrosine-protein phosphatase C isoform CD45RA -relationship: has_plasma_membrane_part PR:000001879 ! leukosialin -relationship: has_plasma_membrane_part PR:000002037 ! complement component C1q receptor -relationship: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor +relationship: RO:0002104 PR:000001015 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RA +relationship: RO:0002104 PR:000001879 ! has plasma membrane part leukosialin +relationship: RO:0002104 PR:000002037 ! has plasma membrane part complement component C1q receptor +relationship: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor +relationship: RO:0015016 PR:000001932 ! has low plasma membrane amount signal transducer CD24 creation_date: 2010-04-28T10:50:07Z [Term] @@ -21829,13 +21961,13 @@ synonym: "Fraction B" BROAD [] is_a: CL:0002400 {is_inferred="true"} ! fraction B/C precursor B cell intersection_of: CL:0002400 ! fraction B/C precursor B cell intersection_of: CL:4030046 PR:000002039 ! lacks_plasma_membrane_part glutamyl aminopeptidase -intersection_of: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -intersection_of: has_plasma_membrane_part PR:000001932 ! signal transducer CD24 +intersection_of: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +intersection_of: RO:0002104 PR:000001932 ! has plasma membrane part signal transducer CD24 relationship: CL:4030046 PR:000002039 ! lacks_plasma_membrane_part glutamyl aminopeptidase relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002045 ! fraction A pre-pro B cell -relationship: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -relationship: has_plasma_membrane_part PR:000001932 ! signal transducer CD24 +relationship: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +relationship: RO:0002104 PR:000001932 ! has plasma membrane part signal transducer CD24 creation_date: 2010-04-28T11:56:21Z [Term] @@ -21848,21 +21980,21 @@ intersection_of: CL:0002400 ! fraction B/C precursor B cell intersection_of: CL:4030044 GO:0071707 ! has_not_completed immunoglobulin heavy chain V-D-J recombination intersection_of: has_part PR:000001858 ! immunoglobulin iota chain intersection_of: has_part PR:000001859 ! immunoglobulin lambda-like polypeptide 1 -intersection_of: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -intersection_of: has_plasma_membrane_part PR:000001932 ! signal transducer CD24 -intersection_of: has_plasma_membrane_part PR:000002039 ! glutamyl aminopeptidase -intersection_of: has_plasma_membrane_part PR:000003457 ! V(D)J recombination-activating protein 1 -intersection_of: has_plasma_membrane_part PR:000003460 ! V(D)J recombination-activating protein 2 +intersection_of: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +intersection_of: RO:0002104 PR:000001932 ! has plasma membrane part signal transducer CD24 +intersection_of: RO:0002104 PR:000002039 ! has plasma membrane part glutamyl aminopeptidase +intersection_of: RO:0002104 PR:000003457 ! has plasma membrane part V(D)J recombination-activating protein 1 +intersection_of: RO:0002104 PR:000003460 ! has plasma membrane part V(D)J recombination-activating protein 2 relationship: CL:4030044 GO:0071707 ! has_not_completed immunoglobulin heavy chain V-D-J recombination relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002047 ! fraction B precursor B cell relationship: has_part PR:000001858 ! immunoglobulin iota chain relationship: has_part PR:000001859 ! immunoglobulin lambda-like polypeptide 1 -relationship: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -relationship: has_plasma_membrane_part PR:000001932 ! signal transducer CD24 -relationship: has_plasma_membrane_part PR:000002039 ! glutamyl aminopeptidase -relationship: has_plasma_membrane_part PR:000003457 ! V(D)J recombination-activating protein 1 -relationship: has_plasma_membrane_part PR:000003460 ! V(D)J recombination-activating protein 2 +relationship: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +relationship: RO:0002104 PR:000001932 ! has plasma membrane part signal transducer CD24 +relationship: RO:0002104 PR:000002039 ! has plasma membrane part glutamyl aminopeptidase +relationship: RO:0002104 PR:000003457 ! has plasma membrane part V(D)J recombination-activating protein 1 +relationship: RO:0002104 PR:000003460 ! has plasma membrane part V(D)J recombination-activating protein 2 creation_date: 2010-04-28T02:04:01Z [Term] @@ -21873,20 +22005,20 @@ synonym: "Fr. C'" BROAD [] synonym: "Fraction C-prime" BROAD [] is_a: CL:0000817 {is_inferred="true"} ! precursor B cell intersection_of: CL:0000817 ! precursor B cell -intersection_of: has_high_plasma_membrane_amount PR:000001932 ! signal transducer CD24 -intersection_of: has_plasma_membrane_part GO:0035369 ! pre-B cell receptor complex -intersection_of: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -intersection_of: has_plasma_membrane_part PR:000001380 ! interleukin-2 receptor subunit alpha -intersection_of: has_plasma_membrane_part PR:000001879 ! leukosialin -intersection_of: has_plasma_membrane_part PR:000002039 ! glutamyl aminopeptidase +intersection_of: RO:0002104 GO:0035369 ! has plasma membrane part pre-B cell receptor complex +intersection_of: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +intersection_of: RO:0002104 PR:000001380 ! has plasma membrane part interleukin-2 receptor subunit alpha +intersection_of: RO:0002104 PR:000001879 ! has plasma membrane part leukosialin +intersection_of: RO:0002104 PR:000002039 ! has plasma membrane part glutamyl aminopeptidase +intersection_of: RO:0015015 PR:000001932 ! has high plasma membrane amount signal transducer CD24 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002049 ! fraction C precursor B cell -relationship: has_high_plasma_membrane_amount PR:000001932 ! signal transducer CD24 -relationship: has_plasma_membrane_part GO:0035369 ! pre-B cell receptor complex -relationship: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -relationship: has_plasma_membrane_part PR:000001380 ! interleukin-2 receptor subunit alpha -relationship: has_plasma_membrane_part PR:000001879 ! leukosialin -relationship: has_plasma_membrane_part PR:000002039 ! glutamyl aminopeptidase +relationship: RO:0002104 GO:0035369 ! has plasma membrane part pre-B cell receptor complex +relationship: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +relationship: RO:0002104 PR:000001380 ! has plasma membrane part interleukin-2 receptor subunit alpha +relationship: RO:0002104 PR:000001879 ! has plasma membrane part leukosialin +relationship: RO:0002104 PR:000002039 ! has plasma membrane part glutamyl aminopeptidase +relationship: RO:0015015 PR:000001932 ! has high plasma membrane amount signal transducer CD24 creation_date: 2010-04-28T02:13:46Z [Term] @@ -21900,24 +22032,24 @@ is_a: CL:0002400 ! fraction B/C precursor B cell intersection_of: CL:0000817 ! precursor B cell intersection_of: CL:4030044 GO:0071708 ! has_not_completed immunoglobulin light chain V-J recombination intersection_of: CL:4030046 GO:0035369 ! lacks_plasma_membrane_part pre-B cell receptor complex -intersection_of: has_low_plasma_membrane_amount PR:000001879 ! leukosialin -intersection_of: has_plasma_membrane_part PR:000001002 ! CD19 molecule -intersection_of: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -intersection_of: has_plasma_membrane_part PR:000001380 ! interleukin-2 receptor subunit alpha -intersection_of: has_plasma_membrane_part PR:000001932 ! signal transducer CD24 -intersection_of: has_plasma_membrane_part PR:000002037 ! complement component C1q receptor -intersection_of: has_plasma_membrane_part PR:000002039 ! glutamyl aminopeptidase +intersection_of: RO:0002104 PR:000001002 ! has plasma membrane part CD19 molecule +intersection_of: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +intersection_of: RO:0002104 PR:000001380 ! has plasma membrane part interleukin-2 receptor subunit alpha +intersection_of: RO:0002104 PR:000001932 ! has plasma membrane part signal transducer CD24 +intersection_of: RO:0002104 PR:000002037 ! has plasma membrane part complement component C1q receptor +intersection_of: RO:0002104 PR:000002039 ! has plasma membrane part glutamyl aminopeptidase +intersection_of: RO:0015016 PR:000001879 ! has low plasma membrane amount leukosialin relationship: CL:4030044 GO:0071708 ! has_not_completed immunoglobulin light chain V-J recombination relationship: CL:4030046 GO:0035369 ! lacks_plasma_membrane_part pre-B cell receptor complex relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002050 ! fraction C' precursor B cell -relationship: has_low_plasma_membrane_amount PR:000001879 ! leukosialin -relationship: has_plasma_membrane_part PR:000001002 ! CD19 molecule -relationship: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -relationship: has_plasma_membrane_part PR:000001380 ! interleukin-2 receptor subunit alpha -relationship: has_plasma_membrane_part PR:000001932 ! signal transducer CD24 -relationship: has_plasma_membrane_part PR:000002037 ! complement component C1q receptor -relationship: has_plasma_membrane_part PR:000002039 ! glutamyl aminopeptidase +relationship: RO:0002104 PR:000001002 ! has plasma membrane part CD19 molecule +relationship: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +relationship: RO:0002104 PR:000001380 ! has plasma membrane part interleukin-2 receptor subunit alpha +relationship: RO:0002104 PR:000001932 ! has plasma membrane part signal transducer CD24 +relationship: RO:0002104 PR:000002037 ! has plasma membrane part complement component C1q receptor +relationship: RO:0002104 PR:000002039 ! has plasma membrane part glutamyl aminopeptidase +relationship: RO:0015016 PR:000001879 ! has low plasma membrane amount leukosialin creation_date: 2010-04-28T02:55:16Z [Term] @@ -21929,18 +22061,18 @@ is_a: CL:0000816 {is_inferred="true"} ! immature B cell intersection_of: CL:0000816 ! immature B cell intersection_of: CL:4030046 PR:000001380 ! lacks_plasma_membrane_part interleukin-2 receptor subunit alpha intersection_of: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 receptor subunit alpha -intersection_of: has_low_plasma_membrane_amount PR:000001879 ! leukosialin -intersection_of: has_plasma_membrane_part PR:000001002 ! CD19 molecule -intersection_of: has_plasma_membrane_part PR:000001932 ! signal transducer CD24 -intersection_of: has_plasma_membrane_part PR:000002037 ! complement component C1q receptor +intersection_of: RO:0002104 PR:000001002 ! has plasma membrane part CD19 molecule +intersection_of: RO:0002104 PR:000001932 ! has plasma membrane part signal transducer CD24 +intersection_of: RO:0002104 PR:000002037 ! has plasma membrane part complement component C1q receptor +intersection_of: RO:0015016 PR:000001879 ! has low plasma membrane amount leukosialin relationship: CL:4030046 PR:000001380 ! lacks_plasma_membrane_part interleukin-2 receptor subunit alpha relationship: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 receptor subunit alpha relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002052 ! fraction D precursor B cell -relationship: has_low_plasma_membrane_amount PR:000001879 ! leukosialin -relationship: has_plasma_membrane_part PR:000001002 ! CD19 molecule -relationship: has_plasma_membrane_part PR:000001932 ! signal transducer CD24 -relationship: has_plasma_membrane_part PR:000002037 ! complement component C1q receptor +relationship: RO:0002104 PR:000001002 ! has plasma membrane part CD19 molecule +relationship: RO:0002104 PR:000001932 ! has plasma membrane part signal transducer CD24 +relationship: RO:0002104 PR:000002037 ! has plasma membrane part complement component C1q receptor +relationship: RO:0015016 PR:000001879 ! has low plasma membrane amount leukosialin creation_date: 2010-04-28T03:13:47Z [Term] @@ -21952,21 +22084,21 @@ intersection_of: CL:0000785 ! mature B cell intersection_of: CL:4030046 PR:000001879 ! lacks_plasma_membrane_part leukosialin intersection_of: CL:4030046 PR:000001880 ! lacks_plasma_membrane_part low affinity immunoglobulin epsilon Fc receptor intersection_of: CL:4030046 PR:000002037 ! lacks_plasma_membrane_part complement component C1q receptor -intersection_of: has_plasma_membrane_part GO:0071738 ! IgD immunoglobulin complex -intersection_of: has_plasma_membrane_part GO:0071753 ! IgM immunoglobulin complex -intersection_of: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -intersection_of: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 -intersection_of: has_plasma_membrane_part PR:000001338 ! complement receptor type 2 +intersection_of: RO:0002104 GO:0071738 ! has plasma membrane part IgD immunoglobulin complex +intersection_of: RO:0002104 GO:0071753 ! has plasma membrane part IgM immunoglobulin complex +intersection_of: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +intersection_of: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 +intersection_of: RO:0002104 PR:000001338 ! has plasma membrane part complement receptor type 2 relationship: CL:4030046 PR:000001879 ! lacks_plasma_membrane_part leukosialin relationship: CL:4030046 PR:000001880 ! lacks_plasma_membrane_part low affinity immunoglobulin epsilon Fc receptor relationship: CL:4030046 PR:000002037 ! lacks_plasma_membrane_part complement component C1q receptor relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002054 ! fraction E immature B cell -relationship: has_plasma_membrane_part GO:0071738 ! IgD immunoglobulin complex -relationship: has_plasma_membrane_part GO:0071753 ! IgM immunoglobulin complex -relationship: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -relationship: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 -relationship: has_plasma_membrane_part PR:000001338 ! complement receptor type 2 +relationship: RO:0002104 GO:0071738 ! has plasma membrane part IgD immunoglobulin complex +relationship: RO:0002104 GO:0071753 ! has plasma membrane part IgM immunoglobulin complex +relationship: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +relationship: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 +relationship: RO:0002104 PR:000001338 ! has plasma membrane part complement receptor type 2 creation_date: 2010-04-30T03:01:48Z [Term] @@ -21978,10 +22110,10 @@ synonym: "CD8alpha-alpha-positive thymic conventional dendritic cell" EXACT [] synonym: "DC.8+.Th" EXACT [] is_a: CL:0000941 {is_inferred="true"} ! thymic conventional dendritic cell intersection_of: CL:0000941 ! thymic conventional dendritic cell -intersection_of: has_plasma_membrane_part PR:000001084 ! T-cell surface glycoprotein CD8 alpha chain +intersection_of: RO:0002104 PR:000001084 ! has plasma membrane part T-cell surface glycoprotein CD8 alpha chain relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_plasma_membrane_part PR:000001084 ! T-cell surface glycoprotein CD8 alpha chain relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:000001084 ! has plasma membrane part T-cell surface glycoprotein CD8 alpha chain creation_date: 2010-06-07T02:48:36Z [Term] @@ -22059,6 +22191,7 @@ synonym: "acinar cell of pancreas" EXACT [] xref: BTO:0000028 xref: CALOHA:TS-0737 xref: FMA:63032 +xref: https://cellxgene.cziscience.com/cellguide/CL_0002064 is_a: CL:0000622 {is_inferred="true"} ! acinar cell is_a: CL:1001599 ! pancreas exocrine glandular cell intersection_of: CL:0000622 ! acinar cell @@ -22074,6 +22207,7 @@ id: CL:0002067 name: type A enteroendocrine cell def: "An enteroendocrine cell that produces glucagon." [GOC:tfm, ISBN:0412046911] xref: FMA:62939 +xref: https://cellxgene.cziscience.com/cellguide/CL_0002067 is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0000170 ! glucagon secreting cell intersection_of: CL:0000164 ! enteroendocrine cell @@ -22431,8 +22565,8 @@ synonym: "CD38-positive naive B-cell" EXACT [] synonym: "CD38-positive naive B-lymphocyte" EXACT [] is_a: CL:0000788 {is_inferred="true"} ! naive B cell intersection_of: CL:0000788 ! naive B cell -intersection_of: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -relationship: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +intersection_of: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +relationship: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 [Term] id: CL:0002102 @@ -22471,8 +22605,8 @@ synonym: "IgG-positive double negative memory B-cell" EXACT [] synonym: "IgG-positive double negative memory B-lymphocyte" EXACT [] is_a: CL:0000981 {is_inferred="true"} ! double negative memory B cell intersection_of: CL:0000981 ! double negative memory B cell -intersection_of: has_plasma_membrane_part GO:0071735 ! IgG immunoglobulin complex -relationship: has_plasma_membrane_part GO:0071735 ! IgG immunoglobulin complex +intersection_of: RO:0002104 GO:0071735 ! has plasma membrane part IgG immunoglobulin complex +relationship: RO:0002104 GO:0071735 ! has plasma membrane part IgG immunoglobulin complex [Term] id: CL:0002104 @@ -22511,8 +22645,8 @@ synonym: "CD38-positive IgG memory B-cell" EXACT [] synonym: "CD38-positive IgG memory B-lymphocyte" EXACT [] is_a: CL:0000979 {is_inferred="true"} ! IgG memory B cell intersection_of: CL:0000979 ! IgG memory B cell -intersection_of: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -relationship: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +intersection_of: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +relationship: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 [Term] id: CL:0002106 @@ -22520,8 +22654,8 @@ name: IgD-positive CD38-positive IgG memory B cell def: "An IgD-positive CD38-positive IgG memory B cell is a CD38-positive IgG-positive class switched memory B cell that has class switched and expresses IgD on the cell surface with the phenotype IgD-positive, CD38-positive, and IgG-positive." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002105 {is_inferred="true"} ! CD38-positive IgG memory B cell intersection_of: CL:0002105 ! CD38-positive IgG memory B cell -intersection_of: has_plasma_membrane_part GO:0071738 ! IgD immunoglobulin complex -relationship: has_plasma_membrane_part GO:0071738 ! IgD immunoglobulin complex +intersection_of: RO:0002104 GO:0071738 ! has plasma membrane part IgD immunoglobulin complex +relationship: RO:0002104 GO:0071738 ! has plasma membrane part IgD immunoglobulin complex [Term] id: CL:0002107 @@ -22562,8 +22696,8 @@ synonym: "CD38+B220+ naive B-cell" EXACT [] synonym: "CD38+B220+ naive B-lymphocyte" EXACT [] is_a: CL:0002101 {is_inferred="true"} ! CD38-positive naive B cell intersection_of: CL:0002101 ! CD38-positive naive B cell -intersection_of: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -relationship: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC +intersection_of: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +relationship: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC [Term] id: CL:0002110 @@ -22571,8 +22705,8 @@ name: B220-low CD38-positive naive B cell def: "A B220-low CD38-positive naive B cell is a CD38-positive naive B cell that has the phenotype B220-low, CD38-positive, surface IgD-positive, surface IgM-positive, and CD27-negative, that has not yet been activated by antigen in the periphery." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002109 ! B220-positive CD38-positive naive B cell intersection_of: CL:0002101 ! CD38-positive naive B cell -intersection_of: has_low_plasma_membrane_amount PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -relationship: has_low_plasma_membrane_amount PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC +intersection_of: RO:0015016 PR:000001014 ! has low plasma membrane amount receptor-type tyrosine-protein phosphatase C isoform CD45RABC +relationship: RO:0015016 PR:000001014 ! has low plasma membrane amount receptor-type tyrosine-protein phosphatase C isoform CD45RABC [Term] id: CL:0002111 @@ -22596,8 +22730,8 @@ name: B220-positive CD38-negative unswitched memory B cell def: "A B220-positive CD38-negative unswitched memory B cell is a CD38-negative unswitched memory B cell that has the phenotype B220-positive, CD38-negative, IgD-positive, CD138-negative, and IgG-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002111 {is_inferred="true"} ! CD38-negative unswitched memory B cell intersection_of: CL:0002111 ! CD38-negative unswitched memory B cell -intersection_of: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -relationship: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC +intersection_of: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +relationship: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC [Term] id: CL:0002113 @@ -22605,8 +22739,8 @@ name: B220-low CD38-negative unswitched memory B cell def: "A B220-low CD38-negative unswitched memory B cell is a CD38-negative unswitched memory B cell that has the phenotype B220-low, CD38-negative, IgD-positive, CD138-negative, and IgG-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002112 ! B220-positive CD38-negative unswitched memory B cell intersection_of: CL:0002111 ! CD38-negative unswitched memory B cell -intersection_of: has_low_plasma_membrane_amount PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -relationship: has_low_plasma_membrane_amount PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC +intersection_of: RO:0015016 PR:000001014 ! has low plasma membrane amount receptor-type tyrosine-protein phosphatase C isoform CD45RABC +relationship: RO:0015016 PR:000001014 ! has low plasma membrane amount receptor-type tyrosine-protein phosphatase C isoform CD45RABC [Term] id: CL:0002114 @@ -22621,8 +22755,8 @@ synonym: "CD38-positive unswitched memory B-cell" EXACT [] synonym: "CD38-positive unswitched memory B-lymphocyte" EXACT [] is_a: CL:0000970 {is_inferred="true"} ! unswitched memory B cell intersection_of: CL:0000970 ! unswitched memory B cell -intersection_of: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -relationship: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +intersection_of: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +relationship: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 [Term] id: CL:0002115 @@ -22630,8 +22764,8 @@ name: B220-positive CD38-positive unswitched memory B cell def: "A B220-positive CD38-positive unswitched memory B cell is a CD38-positive unswitched memory B cell that has the phenotype B220-positive, CD38-positive, IgD-positive, CD138-negative, and IgG-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002114 {is_inferred="true"} ! CD38-positive unswitched memory B cell intersection_of: CL:0002114 ! CD38-positive unswitched memory B cell -intersection_of: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -relationship: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC +intersection_of: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +relationship: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC [Term] id: CL:0002116 @@ -22639,8 +22773,8 @@ name: B220-low CD38-positive unswitched memory B cell def: "A B220-low CD38-positive unswitched memory B cell is a CD38-positive unswitched memory B cell that has the phenotype B220-low, CD38-positive, IgD-positive, CD138-negative, and IgG-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002115 ! B220-positive CD38-positive unswitched memory B cell intersection_of: CL:0002114 ! CD38-positive unswitched memory B cell -intersection_of: has_low_plasma_membrane_amount PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -relationship: has_low_plasma_membrane_amount PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC +intersection_of: RO:0015016 PR:000001014 ! has low plasma membrane amount receptor-type tyrosine-protein phosphatase C isoform CD45RABC +relationship: RO:0015016 PR:000001014 ! has low plasma membrane amount receptor-type tyrosine-protein phosphatase C isoform CD45RABC [Term] id: CL:0002117 @@ -22674,8 +22808,8 @@ name: CD38-positive IgG-negative class switched memory B cell def: "A CD38-positive IgG-negative memory B cell is an IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype CD38-positive and IgG-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002117 {is_inferred="true"} ! IgG-negative class switched memory B cell intersection_of: CL:0002117 ! IgG-negative class switched memory B cell -intersection_of: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -relationship: has_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +intersection_of: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +relationship: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 [Term] id: CL:0002120 @@ -22683,8 +22817,8 @@ name: CD24-positive CD38-negative IgG-negative class switched memory B cell def: "An CD24-positive CD38-negative IgG-negative memory B cell is a CD38-negative IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype CD24-positive, CD38-negative, and IgG-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002118 {is_inferred="true"} ! CD38-negative IgG-negative class switched memory B cell intersection_of: CL:0002118 ! CD38-negative IgG-negative class switched memory B cell -intersection_of: has_plasma_membrane_part PR:000001932 ! signal transducer CD24 -relationship: has_plasma_membrane_part PR:000001932 ! signal transducer CD24 +intersection_of: RO:0002104 PR:000001932 ! has plasma membrane part signal transducer CD24 +relationship: RO:0002104 PR:000001932 ! has plasma membrane part signal transducer CD24 [Term] id: CL:0002121 @@ -22701,8 +22835,8 @@ name: B220-positive CD38-positive IgG-negative class switched memory B cell def: "A B220-positive CD38-positive IgG-negative memory B cell is a CD38-positive IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype B220-positive, CD38-positive, and IgG-negative." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002119 {is_inferred="true"} ! CD38-positive IgG-negative class switched memory B cell intersection_of: CL:0002119 ! CD38-positive IgG-negative class switched memory B cell -intersection_of: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -relationship: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC +intersection_of: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +relationship: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC [Term] id: CL:0002123 @@ -22710,8 +22844,8 @@ name: B220-low CD38-positive IgG-negative class switched memory B cell def: "A B220-low CD38-positive IgG-negative memory B cell is a CD38-positive IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype B220-low, CD38-positive, and IgG-positive." [GOC:dsd, GOC:rhs, GOC:tfm, PMID:20123131] is_a: CL:0002122 ! B220-positive CD38-positive IgG-negative class switched memory B cell intersection_of: CL:0002119 ! CD38-positive IgG-negative class switched memory B cell -intersection_of: has_low_plasma_membrane_amount PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -relationship: has_low_plasma_membrane_amount PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC +intersection_of: RO:0015016 PR:000001014 ! has low plasma membrane amount receptor-type tyrosine-protein phosphatase C isoform CD45RABC +relationship: RO:0015016 PR:000001014 ! has low plasma membrane amount receptor-type tyrosine-protein phosphatase C isoform CD45RABC [Term] id: CL:0002132 @@ -22836,12 +22970,12 @@ comment: These cells possess numerous cilia on their surface, typically ranging subset: cellxgene_subset subset: human_reference_atlas xref: FMA:70542 +xref: https://cellxgene.cziscience.com/cellguide/CL_0002145 is_a: CL:0002202 ! epithelial cell of tracheobronchial tree is_a: CL:0005012 ! multi-ciliated epithelial cell is_a: CL:4030034 ! respiratory ciliated cell relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002209 ! intermediate epitheliocyte -relationship: has_part GO:0031514 ! motile cilium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens creation_date: 2010-08-24T03:38:29Z @@ -22894,6 +23028,7 @@ subset: human_reference_atlas xref: BTO:0001943 xref: FMA:68650 is_a: CL:0000225 ! anucleate cell +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0000311 ! keratin accumulating cell is_a: UBERON:0004121 ! ectoderm-derived structure relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 @@ -22993,8 +23128,10 @@ xref: EMAPA:31247 xref: FMA:70589 is_a: CL:0000500 ! follicular epithelial cell is_a: CL:0002078 ! meso-epithelial cell +is_a: CL:2000064 ! ovarian surface epithelial cell relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: never_in_taxon NCBITaxon:50557 {source="https://github.com/obophenotype/cell-ontology/issues/589"} ! Insecta +relationship: part_of UBERON:0001305 ! ovarian follicle creation_date: 2010-08-25T03:01:27Z [Term] @@ -23078,6 +23215,7 @@ xref: BTO:0004632 xref: FMA:70970 is_a: CL:0000666 ! fenestrated endothelial cell is_a: CL:0002681 ! kidney cortical cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000115 ! endothelial cell intersection_of: part_of UBERON:0000074 ! renal glomerulus relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 @@ -23201,6 +23339,7 @@ synonym: "fibrillovesicular cell" EXACT [] synonym: "multivesicular cell" EXACT [] synonym: "tuft cell" EXACT [] xref: FMA:67978 +xref: https://cellxgene.cziscience.com/cellguide/CL_0002204 is_a: CL:0002076 ! endo-epithelial cell relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-02T02:28:53Z @@ -23419,9 +23558,9 @@ def: "A cell containing at least one nucleus." [GOC:tfm] xref: FMA:67513 is_a: CL:0000000 ! cell intersection_of: CL:0000000 ! cell -intersection_of: has_characteristic PATO:0002505 ! nucleated +intersection_of: RO:0000053 PATO:0002505 ! has characteristic nucleated relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_characteristic PATO:0002505 ! nucleated +relationship: RO:0000053 PATO:0002505 ! has characteristic nucleated creation_date: 2010-09-07T03:32:33Z [Term] @@ -23488,6 +23627,7 @@ def: "A cell that is found in a zone occupying the bottom region of the crypt; p subset: cellxgene_subset synonym: "stem cell of intestinal crypt of Lieberkuhn" EXACT [] xref: FMA:63379 +xref: https://cellxgene.cziscience.com/cellguide/CL_0002250 is_a: CL:0000048 ! multi fate stem cell is_a: CL:0002563 ! intestinal epithelial cell intersection_of: CL:0000034 ! stem cell @@ -23561,10 +23701,10 @@ is_a: CL:0000499 {is_inferred="true"} ! stromal cell intersection_of: CL:0000499 ! stromal cell intersection_of: part_of UBERON:0001295 ! endometrium relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_potential_to_directly_develop_into CL:2000002 ! decidual cell relationship: part_of UBERON:0001295 ! endometrium relationship: part_of UBERON:0002337 ! endometrial stroma relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002388 CL:2000002 ! has potential to directly develop into decidual cell creation_date: 2010-09-08T09:50:04Z [Term] @@ -23728,6 +23868,7 @@ synonym: "PP cell of pancreatic islet" EXACT [] synonym: "PP-cell of pancreatic islet" EXACT [] xref: BTO:0000805 xref: FMA:70588 +xref: https://cellxgene.cziscience.com/cellguide/CL_0002275 xref: MESH:D050418 is_a: CL:0000696 ! PP cell is_a: CL:0008024 ! pancreatic endocrine cell @@ -23784,17 +23925,19 @@ creation_date: 2010-09-13T02:37:23Z [Term] id: CL:0002301 name: type B synovial cell -def: "A resident stromal cell located in the synovial membrane and responsible for the production of immune-related cytokines and chemokines. This cell type secretes glycoproteins and hyaluronic acid, has abundant granular endoplasmic reticulum, but contains fewer vacuoles and vesicles." [GOC:tfm, ISBN:0517223651, PMID:34433485, PMID:34772990] {terms:contributor="https://orcid.org/0000-0002-0819-0473"} +def: "A resident stromal cell located in the synovial membrane and responsible for the production of immune-related cytokines and chemokines. This cell type secretes glycoproteins and hyaluronic acid, has abundant granular endoplasmic reticulum, but contains fewer vacuoles and vesicles." [GOC:tfm, ISBN:0517223651, PMID:34433485, PMID:34772990] comment: Type B synovial cells play a key role in the pathogenesis of chronic inflammatory diseases, such as rheumatoid arthritis, and are essential for the maintenance of normal joint functions. Fibroblast-like synoviocytes from different joints have different properties, which may contribute to the characteristic pattern of joint involvement in different types of arthritis. {xref="https://en.wikipedia.org/wiki/Fibroblast-like_synoviocyte", xref="PMID:34433485"} synonym: "fibroblast-like synoviocyte" EXACT [] synonym: "synovial fibroblast" EXACT [PMID:23147896] xref: BTO:0003652 xref: FMA:66788 +is_a: CL:0000076 ! squamous epithelial cell is_a: CL:0000214 ! synovial cell is_a: CL:0000499 ! stromal cell intersection_of: CL:0000499 ! stromal cell intersection_of: part_of UBERON:0002018 ! synovial membrane of synovial joint relationship: capable_of GO:0030213 ! hyaluronan biosynthetic process +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0002018 ! synovial membrane of synovial joint relationship: produces UBERON:0001090 ! synovial fluid @@ -23834,6 +23977,19 @@ intersection_of: part_of UBERON:0004134 ! proximal tubule relationship: part_of UBERON:0004134 ! proximal tubule relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +[Term] +id: CL:0002307 +name: brush border cell of the proximal tubule +def: "A brush border epithelial cell located in the proximal tubule of the kidney, essential for reabsorbing substances like glucose and amino acids from the glomerular filtrate. These cells also secrete organic ions, playing a crucial role in maintaining kidney homeostasis, including electrolyte and acid-base balance, and excreting metabolic waste." [GOC:tfm, ISBN:1-4160-2328-3, PMID:23799132] +comment: The vast majority of proximal tubule epithelial cells have a brush border, but there are rare exceptions. +is_a: CL:0000239 ! brush border epithelial cell +is_a: CL:0002306 ! epithelial cell of proximal tubule +intersection_of: CL:0002306 ! epithelial cell of proximal tubule +intersection_of: has_part GO:0005903 ! brush border +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 +relationship: has_part GO:0005903 ! brush border +creation_date: 2010-09-14T11:29:20Z + [Term] id: CL:0002308 name: epithelial cell of skin gland @@ -23913,7 +24069,7 @@ def: "A cell that is part of the nervous system." [GOC:tfm, ISBN:0618947256] subset: cellxgene_subset xref: CALOHA:TS-2040 xref: FMA:70333 -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000000 ! cell intersection_of: part_of UBERON:0001016 ! nervous system relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 @@ -23928,7 +24084,7 @@ subset: cellxgene_subset xref: CALOHA:TS-2096 xref: FMA:63875 xref: MESH:D003239 -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000000 ! cell intersection_of: part_of UBERON:0002384 ! connective tissue relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 @@ -24060,6 +24216,7 @@ name: basal epithelial cell of tracheobronchial tree def: "An epithelial cell type that lacks the columnar shape typical for other respiratory epithelial cells. This cell type is able to differentiate into other respiratory epithelial cells in response to injury." [GOC:tfm] subset: cellxgene_subset subset: human_reference_atlas +xref: https://cellxgene.cziscience.com/cellguide/CL_0002329 is_a: CL:0002202 ! epithelial cell of tracheobronchial tree relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -24074,9 +24231,9 @@ subset: human_reference_atlas is_a: CL:0002145 ! ciliated columnar cell of tracheobronchial tree is_a: CL:0002328 ! bronchial epithelial cell intersection_of: CL:0000064 ! ciliated cell -intersection_of: part_of UBERON:0002185 ! bronchus +intersection_of: part_of UBERON:0002031 ! epithelium of bronchus relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: part_of UBERON:0002185 ! bronchus +relationship: part_of UBERON:0002031 ! epithelium of bronchus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens creation_date: 2010-09-20T02:21:12Z @@ -24126,21 +24283,22 @@ comment: Human markers; killer cell immunoglobulin-like receptor 2DL1 is used as subset: cellxgene_subset synonym: "p-NK" RELATED [PMID:12457618] is_a: CL:0000823 ! immature natural killer cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000823 ! immature natural killer cell intersection_of: CL:4030046 PR:000001003 ! lacks_plasma_membrane_part CD34 molecule -intersection_of: has_plasma_membrane_part PR:000001024 ! neural cell adhesion molecule 1 -intersection_of: has_plasma_membrane_part PR:000001381 ! interleukin-2 receptor subunit beta -intersection_of: has_plasma_membrane_part PR:000001874 ! KLRB1-like protein -intersection_of: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor intersection_of: in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002104 PR:000001024 ! has plasma membrane part neural cell adhesion molecule 1 +intersection_of: RO:0002104 PR:000001381 ! has plasma membrane part interleukin-2 receptor subunit beta +intersection_of: RO:0002104 PR:000001874 ! has plasma membrane part KLRB1-like protein +intersection_of: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor relationship: CL:4030046 PR:000001003 ! lacks_plasma_membrane_part CD34 molecule relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002344 ! CD56-negative, CD161-positive immature natural killer cell, human -relationship: has_plasma_membrane_part PR:000001024 ! neural cell adhesion molecule 1 -relationship: has_plasma_membrane_part PR:000001381 ! interleukin-2 receptor subunit beta -relationship: has_plasma_membrane_part PR:000001874 ! KLRB1-like protein -relationship: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor relationship: in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:000001024 ! has plasma membrane part neural cell adhesion molecule 1 +relationship: RO:0002104 PR:000001381 ! has plasma membrane part interleukin-2 receptor subunit beta +relationship: RO:0002104 PR:000001874 ! has plasma membrane part KLRB1-like protein +relationship: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor creation_date: 2010-09-21T10:06:53Z [Term] @@ -24174,20 +24332,21 @@ def: "A natural killer cell that is developmentally immature, has the phenotype comment: Human markers; killer cell immunoglobulin-like receptor 2DL1 is used as a representative example (PRO at this time lacks a KIR superfamily). synonym: "p-NK" RELATED [PMID:12457618] is_a: CL:0000823 ! immature natural killer cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000823 ! immature natural killer cell intersection_of: CL:4030046 PR:000001003 ! lacks_plasma_membrane_part CD34 molecule intersection_of: CL:4030046 PR:000001024 ! lacks_plasma_membrane_part neural cell adhesion molecule 1 -intersection_of: has_plasma_membrane_part PR:000001381 ! interleukin-2 receptor subunit beta -intersection_of: has_plasma_membrane_part PR:000001874 ! KLRB1-like protein -intersection_of: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor intersection_of: in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002104 PR:000001381 ! has plasma membrane part interleukin-2 receptor subunit beta +intersection_of: RO:0002104 PR:000001874 ! has plasma membrane part KLRB1-like protein +intersection_of: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor relationship: CL:4030046 PR:000001003 ! lacks_plasma_membrane_part CD34 molecule relationship: CL:4030046 PR:000001024 ! lacks_plasma_membrane_part neural cell adhesion molecule 1 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_plasma_membrane_part PR:000001381 ! interleukin-2 receptor subunit beta -relationship: has_plasma_membrane_part PR:000001874 ! KLRB1-like protein -relationship: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor relationship: in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:000001381 ! has plasma membrane part interleukin-2 receptor subunit beta +relationship: RO:0002104 PR:000001874 ! has plasma membrane part KLRB1-like protein +relationship: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor creation_date: 2010-09-20T04:33:11Z [Term] @@ -24234,26 +24393,27 @@ id: CL:0002353 name: fetal liver hematopoietic progenitor cell def: "A hematopoietic stem cell that resides in the fetal liver. In mice, this cell type is first observed at E10.5. This cell type is MHC-positive, HSA-positive, AA4.1-positive, CD45-positive, Sca-1 positive, CD150-positive, CD48-negative and CD244-negative." [GOC:tfm, ISBN:978-1-60327-346-6, PMID:16569764] is_a: CL:0002352 {is_inferred="true"} ! gestational hematopoietic stem cell +is_a: PR:000050567 ! obsolete protein-containing material entity is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: CL:0002352 ! gestational hematopoietic stem cell intersection_of: CL:4030046 PR:000001308 ! lacks_plasma_membrane_part CD48 molecule intersection_of: CL:4030046 PR:000001896 ! lacks_plasma_membrane_part natural killer cell receptor 2B4 -intersection_of: has_plasma_membrane_part GO:0042611 ! MHC protein complex -intersection_of: has_plasma_membrane_part PR:000001006 ! receptor-type tyrosine-protein phosphatase C -intersection_of: has_plasma_membrane_part PR:000001833 ! SLAM family member 1 -intersection_of: has_plasma_membrane_part PR:000001932 ! signal transducer CD24 -intersection_of: has_plasma_membrane_part PR:000002037 ! complement component C1q receptor -intersection_of: has_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 +intersection_of: RO:0002104 GO:0042611 ! has plasma membrane part MHC protein complex +intersection_of: RO:0002104 PR:000001006 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C +intersection_of: RO:0002104 PR:000001833 ! has plasma membrane part SLAM family member 1 +intersection_of: RO:0002104 PR:000001932 ! has plasma membrane part signal transducer CD24 +intersection_of: RO:0002104 PR:000002037 ! has plasma membrane part complement component C1q receptor +intersection_of: RO:0002104 PR:000002979 ! has plasma membrane part lymphocyte antigen 6A-2/6E-1 relationship: CL:4030046 PR:000001308 ! lacks_plasma_membrane_part CD48 molecule relationship: CL:4030046 PR:000001896 ! lacks_plasma_membrane_part natural killer cell receptor 2B4 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_plasma_membrane_part GO:0042611 ! MHC protein complex -relationship: has_plasma_membrane_part PR:000001006 ! receptor-type tyrosine-protein phosphatase C -relationship: has_plasma_membrane_part PR:000001833 ! SLAM family member 1 -relationship: has_plasma_membrane_part PR:000001932 ! signal transducer CD24 -relationship: has_plasma_membrane_part PR:000002037 ! complement component C1q receptor -relationship: has_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 relationship: part_of UBERON:0002107 ! liver +relationship: RO:0002104 GO:0042611 ! has plasma membrane part MHC protein complex +relationship: RO:0002104 PR:000001006 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C +relationship: RO:0002104 PR:000001833 ! has plasma membrane part SLAM family member 1 +relationship: RO:0002104 PR:000001932 ! has plasma membrane part signal transducer CD24 +relationship: RO:0002104 PR:000002037 ! has plasma membrane part complement component C1q receptor +relationship: RO:0002104 PR:000002979 ! has plasma membrane part lymphocyte antigen 6A-2/6E-1 creation_date: 2010-09-22T09:08:32Z [Term] @@ -24262,21 +24422,22 @@ name: yolk sac hematopoietic stem cell def: "A hematopoietic stem found in the yolk sac. In mice, this cell type is Sca-1-negative, CD45-negative, MHC-negative, HSA-positive, AA4.1-positive, CD44-positive." [doi:10.1097/MOH.0b013e3282f97ae1, GOC:tfm] synonym: "hemangioblast precursor" EXACT [] is_a: CL:0002352 {is_inferred="true"} ! gestational hematopoietic stem cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0002352 ! gestational hematopoietic stem cell intersection_of: CL:4030046 GO:0042611 ! lacks_plasma_membrane_part MHC protein complex intersection_of: CL:4030046 PR:000001006 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C intersection_of: CL:4030046 PR:000002979 ! lacks_plasma_membrane_part lymphocyte antigen 6A-2/6E-1 -intersection_of: has_plasma_membrane_part PR:000001307 ! CD44 molecule -intersection_of: has_plasma_membrane_part PR:000001932 ! signal transducer CD24 -intersection_of: has_plasma_membrane_part PR:000002037 ! complement component C1q receptor +intersection_of: RO:0002104 PR:000001307 ! has plasma membrane part CD44 molecule +intersection_of: RO:0002104 PR:000001932 ! has plasma membrane part signal transducer CD24 +intersection_of: RO:0002104 PR:000002037 ! has plasma membrane part complement component C1q receptor relationship: CL:4030046 GO:0042611 ! lacks_plasma_membrane_part MHC protein complex relationship: CL:4030046 PR:000001006 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C relationship: CL:4030046 PR:000002979 ! lacks_plasma_membrane_part lymphocyte antigen 6A-2/6E-1 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_plasma_membrane_part PR:000001307 ! CD44 molecule -relationship: has_plasma_membrane_part PR:000001932 ! signal transducer CD24 -relationship: has_plasma_membrane_part PR:000002037 ! complement component C1q receptor relationship: part_of UBERON:0001040 ! yolk sac +relationship: RO:0002104 PR:000001307 ! has plasma membrane part CD44 molecule +relationship: RO:0002104 PR:000001932 ! has plasma membrane part signal transducer CD24 +relationship: RO:0002104 PR:000002037 ! has plasma membrane part complement component C1q receptor creation_date: 2010-09-22T09:08:34Z [Term] @@ -24399,6 +24560,7 @@ name: respiratory goblet cell def: "A simple columnar epithelial cell that secretes mucin. Rough endoplasmic reticulum, mitochondria, the nucleus, and other organelles are concentrated in the basal portion. The apical plasma membrane projects microvilli to increase surface area for secretion." [GOC:tfm, ISBN:0721662544] subset: cellxgene_subset synonym: "respiratory mucosa goblet cells" EXACT [MP:0010863] +xref: https://cellxgene.cziscience.com/cellguide/CL_0002370 is_a: CL:0000160 ! goblet cell is_a: CL:0002368 ! respiratory epithelial cell intersection_of: CL:0000160 ! goblet cell @@ -24410,19 +24572,19 @@ creation_date: 2010-09-23T04:42:27Z [Term] id: CL:0002372 name: myotube -def: "A transversely striated, synctial muscle cell, formed by the fusion of myoblasts." [GOC:dos, GOC:tfm, ISBN:0323052908, PMID:22274696] -synonym: "myotubule" EXACT [] -synonym: "single cell sarcomere" EXACT [] -is_a: CL:0000228 ! multinucleate cell +def: "A transversely striated, multinucleated syncytial muscle cell, formed by the fusion of myoblasts during muscle development." [GOC:dos, GOC:tfm, ISBN:0323052908, PMID:22274696] +synonym: "myofiber" EXACT [FBbt:00005812] +synonym: "myofibril" EXACT [FBbt:00005812] is_a: CL:0000737 ! striated muscle cell +is_a: CL:4052002 ! syncytial cell intersection_of: CL:0000187 ! muscle cell -intersection_of: has_characteristic PATO:0001908 ! multinucleate -intersection_of: has_characteristic PATO:0002478 ! transversely striated intersection_of: has_part GO:0030017 ! sarcomere +intersection_of: RO:0000053 PATO:0001908 ! has characteristic multinucleate +intersection_of: RO:0000053 PATO:0002478 ! has characteristic transversely striated relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_characteristic PATO:0001908 ! multinucleate -relationship: has_characteristic PATO:0002478 ! transversely striated relationship: has_part GO:0030017 ! sarcomere +relationship: RO:0000053 PATO:0001908 ! has characteristic multinucleate +relationship: RO:0000053 PATO:0002478 ! has characteristic transversely striated creation_date: 2010-09-24T01:13:01Z [Term] @@ -24441,14 +24603,17 @@ creation_date: 2010-09-24T01:49:31Z [Term] id: CL:0002375 name: Schwann cell precursor -def: "A glioblast cell that develops from a migratory neural crest cell. The SCP is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has no basal lamina. In rodents SCPs are the only cells in the Schwann cell linage that expresses Cdh19." [GOC:tfm] +def: "A multipotent progenitor cell that develops from a migratory neural crest cell. The schwann cell precursor is embedded among axons, with minimal extracellular space separating them from nerve cell membranes. This cell lacks a basal lamina, which distinguishes it from more mature Schwann cells. In rodents, cadherin-19 (Cdh19) serves as a specific marker for this developmental stage." [GOC:tfm, PMID:15580626, PMID:30971890, PMID:35815410] +comment: Schwann cell precursor are capable of differentiating into Schwann cells and other cell types such as melanocytes, neurons, and mesenchymal cells. {xref="PMID:35815410"} subset: cellxgene_subset synonym: "Schwann cell precursor cell" EXACT [] -is_a: CL:0000030 ! glioblast +synonym: "SCP" RELATED OMO:0003000 [PMID:35815410] is_a: CL:0011026 ! progenitor cell is_a: UBERON:0010313 ! neural crest-derived structure relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0000333 ! migratory neural crest cell +relationship: has_potential_to_develop_into CL:0002573 ! Schwann cell +relationship: RO:0000053 PATO:0001402 ! has characteristic multipotent creation_date: 2010-09-24T02:06:10Z [Term] @@ -24495,16 +24660,16 @@ intersection_of: CL:0000860 ! classical monocyte intersection_of: CL:4030046 PR:000001014 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RABC intersection_of: CL:4030046 PR:000001206 ! lacks_plasma_membrane_part CX3C chemokine receptor 1 intersection_of: CL:4030046 PR:000001879 ! lacks_plasma_membrane_part leukosialin -intersection_of: has_high_plasma_membrane_amount PR:000002980 ! lymphocyte antigen 6C2 -intersection_of: has_plasma_membrane_part PR:000001012 ! integrin alpha-M -intersection_of: has_plasma_membrane_part PR:000002062 ! macrophage colony-stimulating factor 1 receptor +intersection_of: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M +intersection_of: RO:0002104 PR:000002062 ! has plasma membrane part macrophage colony-stimulating factor 1 receptor +intersection_of: RO:0015015 PR:000002980 ! has high plasma membrane amount lymphocyte antigen 6C2 relationship: CL:4030046 PR:000001014 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RABC relationship: CL:4030046 PR:000001206 ! lacks_plasma_membrane_part CX3C chemokine receptor 1 relationship: CL:4030046 PR:000001879 ! lacks_plasma_membrane_part leukosialin relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_high_plasma_membrane_amount PR:000002980 ! lymphocyte antigen 6C2 -relationship: has_plasma_membrane_part PR:000001012 ! integrin alpha-M -relationship: has_plasma_membrane_part PR:000002062 ! macrophage colony-stimulating factor 1 receptor +relationship: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M +relationship: RO:0002104 PR:000002062 ! has plasma membrane part macrophage colony-stimulating factor 1 receptor +relationship: RO:0015015 PR:000002980 ! has high plasma membrane amount lymphocyte antigen 6C2 creation_date: 2010-10-04T11:26:18Z [Term] @@ -24517,10 +24682,10 @@ synonym: "CD16+ monocyte" EXACT [PMID:22343568] is_a: CL:0001054 ! CD14-positive monocyte intersection_of: CL:0001054 ! CD14-positive monocyte intersection_of: CL:4030046 PR:000001199 ! lacks_plasma_membrane_part C-C chemokine receptor type 2 -intersection_of: has_plasma_membrane_part PR:000001483 ! low affinity immunoglobulin gamma Fc region receptor III +intersection_of: RO:0002104 PR:000001483 ! has plasma membrane part low affinity immunoglobulin gamma Fc region receptor III relationship: CL:4030046 PR:000001199 ! lacks_plasma_membrane_part C-C chemokine receptor type 2 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_plasma_membrane_part PR:000001483 ! low affinity immunoglobulin gamma Fc region receptor III +relationship: RO:0002104 PR:000001483 ! has plasma membrane part low affinity immunoglobulin gamma Fc region receptor III creation_date: 2010-10-04T12:49:47Z [Term] @@ -24530,16 +24695,16 @@ def: "An intermediate monocyte that is Gr1-positive, CD43-positive." [GOC:tfm, P is_a: CL:0001022 ! CD115-positive monocyte is_a: CL:0002393 ! intermediate monocyte intersection_of: CL:0000576 ! monocyte -intersection_of: has_plasma_membrane_part PR:000001012 ! integrin alpha-M -intersection_of: has_plasma_membrane_part PR:000001879 ! leukosialin -intersection_of: has_plasma_membrane_part PR:000002062 ! macrophage colony-stimulating factor 1 receptor -intersection_of: has_plasma_membrane_part PR:000002980 ! lymphocyte antigen 6C2 +intersection_of: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M +intersection_of: RO:0002104 PR:000001879 ! has plasma membrane part leukosialin +intersection_of: RO:0002104 PR:000002062 ! has plasma membrane part macrophage colony-stimulating factor 1 receptor +intersection_of: RO:0002104 PR:000002980 ! has plasma membrane part lymphocyte antigen 6C2 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002395 ! Gr1-high classical monocyte -relationship: has_plasma_membrane_part PR:000001012 ! integrin alpha-M -relationship: has_plasma_membrane_part PR:000001879 ! leukosialin -relationship: has_plasma_membrane_part PR:000002062 ! macrophage colony-stimulating factor 1 receptor -relationship: has_plasma_membrane_part PR:000002980 ! lymphocyte antigen 6C2 +relationship: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M +relationship: RO:0002104 PR:000001879 ! has plasma membrane part leukosialin +relationship: RO:0002104 PR:000002062 ! has plasma membrane part macrophage colony-stimulating factor 1 receptor +relationship: RO:0002104 PR:000002980 ! has plasma membrane part lymphocyte antigen 6C2 creation_date: 2010-10-04T12:49:49Z [Term] @@ -24549,16 +24714,16 @@ def: "A precursor B cell that is AA4-positive, IgM-negative, CD19-positive, CD43 is_a: CL:0000817 {is_inferred="true"} ! precursor B cell intersection_of: CL:0000817 ! precursor B cell intersection_of: CL:4030046 GO:0071753 ! lacks_plasma_membrane_part IgM immunoglobulin complex -intersection_of: has_plasma_membrane_part PR:000001002 ! CD19 molecule -intersection_of: has_plasma_membrane_part PR:000001879 ! leukosialin -intersection_of: has_plasma_membrane_part PR:000001932 ! signal transducer CD24 -intersection_of: has_plasma_membrane_part PR:000002037 ! complement component C1q receptor +intersection_of: RO:0002104 PR:000001002 ! has plasma membrane part CD19 molecule +intersection_of: RO:0002104 PR:000001879 ! has plasma membrane part leukosialin +intersection_of: RO:0002104 PR:000001932 ! has plasma membrane part signal transducer CD24 +intersection_of: RO:0002104 PR:000002037 ! has plasma membrane part complement component C1q receptor relationship: CL:4030046 GO:0071753 ! lacks_plasma_membrane_part IgM immunoglobulin complex relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_plasma_membrane_part PR:000001002 ! CD19 molecule -relationship: has_plasma_membrane_part PR:000001879 ! leukosialin -relationship: has_plasma_membrane_part PR:000001932 ! signal transducer CD24 -relationship: has_plasma_membrane_part PR:000002037 ! complement component C1q receptor +relationship: RO:0002104 PR:000001002 ! has plasma membrane part CD19 molecule +relationship: RO:0002104 PR:000001879 ! has plasma membrane part leukosialin +relationship: RO:0002104 PR:000001932 ! has plasma membrane part signal transducer CD24 +relationship: RO:0002104 PR:000002037 ! has plasma membrane part complement component C1q receptor creation_date: 2010-10-05T10:11:38Z [Term] @@ -24572,20 +24737,20 @@ intersection_of: CL:0000785 ! mature B cell intersection_of: CL:4030046 PR:000001839 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD5 intersection_of: CL:4030046 PR:000001879 ! lacks_plasma_membrane_part leukosialin intersection_of: CL:4030046 PR:000002037 ! lacks_plasma_membrane_part complement component C1q receptor -intersection_of: has_plasma_membrane_part GO:0071753 ! IgM immunoglobulin complex -intersection_of: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -intersection_of: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 -intersection_of: has_plasma_membrane_part PR:000001338 ! complement receptor type 2 intersection_of: part_of UBERON:0001211 ! Peyer's patch +intersection_of: RO:0002104 GO:0071753 ! has plasma membrane part IgM immunoglobulin complex +intersection_of: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +intersection_of: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 +intersection_of: RO:0002104 PR:000001338 ! has plasma membrane part complement receptor type 2 relationship: CL:4030046 PR:000001839 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD5 relationship: CL:4030046 PR:000001879 ! lacks_plasma_membrane_part leukosialin relationship: CL:4030046 PR:000002037 ! lacks_plasma_membrane_part complement component C1q receptor relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_plasma_membrane_part GO:0071753 ! IgM immunoglobulin complex -relationship: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -relationship: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 -relationship: has_plasma_membrane_part PR:000001338 ! complement receptor type 2 relationship: part_of UBERON:0001211 ! Peyer's patch +relationship: RO:0002104 GO:0071753 ! has plasma membrane part IgM immunoglobulin complex +relationship: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC +relationship: RO:0002104 PR:000001289 ! has plasma membrane part membrane-spanning 4-domains subfamily A member 1 +relationship: RO:0002104 PR:000001338 ! has plasma membrane part complement receptor type 2 creation_date: 2010-10-05T11:18:03Z [Term] @@ -24611,9 +24776,9 @@ def: "A reticulocyte that retains the nucleus and other organelles. Found in bir is_a: CL:0000558 {is_inferred="true"} ! reticulocyte is_a: CL:0002242 ! nucleate cell intersection_of: CL:0000558 ! reticulocyte -intersection_of: has_characteristic PATO:0002505 ! nucleated +intersection_of: RO:0000053 PATO:0002505 ! has characteristic nucleated relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_characteristic PATO:0002505 ! nucleated +relationship: RO:0000053 PATO:0002505 ! has characteristic nucleated creation_date: 2010-10-15T09:24:05Z [Term] @@ -24626,11 +24791,11 @@ xref: FMA:66785 is_a: CL:0000225 ! anucleate cell is_a: CL:0000558 {is_inferred="true"} ! reticulocyte intersection_of: CL:0000558 ! reticulocyte -intersection_of: has_characteristic PATO:0001405 ! anucleate intersection_of: has_part GO:0005840 ! ribosome +intersection_of: RO:0000053 PATO:0001405 ! has characteristic anucleate relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_characteristic PATO:0001405 ! anucleate relationship: has_part GO:0005840 ! ribosome +relationship: RO:0000053 PATO:0001405 ! has characteristic anucleate creation_date: 2010-10-15T09:24:08Z [Term] @@ -24643,24 +24808,24 @@ subset: human_reference_atlas synonym: "ETP" EXACT [] synonym: "preT.ETP.Th" EXACT [] is_a: CL:0000827 {is_inferred="true"} ! pro-T cell +is_a: PR:000050567 ! obsolete protein-containing material entity intersection_of: CL:0000827 ! pro-T cell intersection_of: CL:4030046 PR:000001380 ! lacks_plasma_membrane_part interleukin-2 receptor subunit alpha -intersection_of: has_plasma_membrane_part PR:000001307 ! CD44 molecule -intersection_of: has_plasma_membrane_part PR:000001869 ! interleukin-7 receptor subunit alpha -intersection_of: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor +intersection_of: RO:0002104 PR:000001307 ! has plasma membrane part CD44 molecule +intersection_of: RO:0002104 PR:000001869 ! has plasma membrane part interleukin-7 receptor subunit alpha +intersection_of: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor relationship: CL:4030046 PR:000001380 ! lacks_plasma_membrane_part interleukin-2 receptor subunit alpha relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_plasma_membrane_part PR:000001307 ! CD44 molecule -relationship: has_plasma_membrane_part PR:000001869 ! interleukin-7 receptor subunit alpha -relationship: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 PR:000001307 ! has plasma membrane part CD44 molecule +relationship: RO:0002104 PR:000001869 ! has plasma membrane part interleukin-7 receptor subunit alpha +relationship: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor creation_date: 2010-10-21T01:16:24Z [Term] id: CL:0002453 name: oligodendrocyte precursor cell def: "A progenitor cell of the central nervous system that can differentiate into oligodendrocytes or type-2 astrocytes. This cell originates from multiple structures within the developing brain including the medial ganglion eminence and the lateral ganglionic eminence. These cells migrate throughout the central nervous system and persist into adulthood where they play an important role in remyelination of injured neurons." [GOC:tfm, PMID:10704434, PMID:11756508, PMID:20142420, PMID:2182078, PMID:24133281, PMID:9826671] -comment: This cell type can be purified from optic nerves and other regions of the embryonic, postnatal and adult rat CNS and can be differentiated in vitro to oligodendrocytes and type-2 astrocytes. Some references use the terms 'oligodendrocyte precursor cell' and 'oligodendrocyte type-2 astrocyte (O-2A) progenitor' to refer to the same entity (e.g., PMID:10704434), while others describe an oligodendrocyte type-2 astrocyte (O-2A) progenitor cell as the precurosr to oligodendrocyte- and type-2 astrocyte- progenitor cells (e.g, ISBN:9780702028991). {xref="PMID:10704434", xref="ISBN:9780702028991", xref="PMID:2182078"} subset: cellxgene_subset subset: human_reference_atlas synonym: "O-2A/OPC" RELATED OMO:0003000 [PMID:24133281] @@ -24700,16 +24865,16 @@ subset: human_reference_atlas is_a: CL:0000453 {is_inferred="true"} ! Langerhans cell is_a: CL:0002465 ! CD11b-positive dendritic cell intersection_of: CL:0000453 ! Langerhans cell -intersection_of: has_plasma_membrane_part GO:0042613 ! MHC class II protein complex -intersection_of: has_plasma_membrane_part PR:000001012 ! integrin alpha-M -intersection_of: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC intersection_of: located_in UBERON:0001003 ! skin epidermis +intersection_of: RO:0002104 GO:0042613 ! has plasma membrane part MHC class II protein complex +intersection_of: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M +intersection_of: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_plasma_membrane_part GO:0042613 ! MHC class II protein complex -relationship: has_plasma_membrane_part PR:000001012 ! integrin alpha-M -relationship: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC relationship: located_in UBERON:0001003 ! skin epidermis relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002104 GO:0042613 ! has plasma membrane part MHC class II protein complex +relationship: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M +relationship: RO:0002104 PR:000001014 ! has plasma membrane part receptor-type tyrosine-protein phosphatase C isoform CD45RABC creation_date: 2010-11-22T03:57:57Z [Term] @@ -24732,9 +24897,9 @@ name: CD11b-positive dendritic cell def: "A conventional dendritic cell that expresses CD11b (ITGAM)." [GOC:tfm, http://www.immgen.org/index_content.html] is_a: CL:0000990 {is_inferred="true"} ! conventional dendritic cell intersection_of: CL:0000990 ! conventional dendritic cell -intersection_of: has_plasma_membrane_part PR:000001012 ! integrin alpha-M +intersection_of: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_plasma_membrane_part PR:000001012 ! integrin alpha-M +relationship: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M creation_date: 2010-11-23T01:50:05Z [Term] @@ -24745,10 +24910,10 @@ synonym: "MDS.Gr1hi" EXACT [] is_a: CL:0000889 {is_inferred="true"} ! myeloid suppressor cell intersection_of: CL:0000889 ! myeloid suppressor cell intersection_of: CL:4030046 PR:000001013 ! lacks_plasma_membrane_part integrin alpha-X -intersection_of: has_high_plasma_membrane_amount PR:000002980 ! lymphocyte antigen 6C2 +intersection_of: RO:0015015 PR:000002980 ! has high plasma membrane amount lymphocyte antigen 6C2 relationship: CL:4030046 PR:000001013 ! lacks_plasma_membrane_part integrin alpha-X relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_high_plasma_membrane_amount PR:000002980 ! lymphocyte antigen 6C2 +relationship: RO:0015015 PR:000002980 ! has high plasma membrane amount lymphocyte antigen 6C2 creation_date: 2010-11-23T02:15:12Z [Term] @@ -24758,11 +24923,11 @@ def: "A myeloid suppressor cell that is Gr1-low and CD11c-positive." [GOC:tfm, h synonym: "MDS.Gr1lo" EXACT [] is_a: CL:0000889 {is_inferred="true"} ! myeloid suppressor cell intersection_of: CL:0000889 ! myeloid suppressor cell -intersection_of: has_low_plasma_membrane_amount PR:000002980 ! lymphocyte antigen 6C2 -intersection_of: has_plasma_membrane_part PR:000001013 ! integrin alpha-X +intersection_of: RO:0002104 PR:000001013 ! has plasma membrane part integrin alpha-X +intersection_of: RO:0015016 PR:000002980 ! has low plasma membrane amount lymphocyte antigen 6C2 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_low_plasma_membrane_amount PR:000002980 ! lymphocyte antigen 6C2 -relationship: has_plasma_membrane_part PR:000001013 ! integrin alpha-X +relationship: RO:0002104 PR:000001013 ! has plasma membrane part integrin alpha-X +relationship: RO:0015016 PR:000002980 ! has low plasma membrane amount lymphocyte antigen 6C2 creation_date: 2010-11-23T02:19:43Z [Term] @@ -24785,9 +24950,9 @@ subset: cellxgene_subset synonym: "Mo.6c+II" EXACT [] is_a: CL:0002395 {is_inferred="true"} ! Gr1-high classical monocyte intersection_of: CL:0002395 ! Gr1-high classical monocyte -intersection_of: has_plasma_membrane_part GO:0042613 ! MHC class II protein complex +intersection_of: RO:0002104 GO:0042613 ! has plasma membrane part MHC class II protein complex relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_plasma_membrane_part GO:0042613 ! MHC class II protein complex +relationship: RO:0002104 GO:0042613 ! has plasma membrane part MHC class II protein complex creation_date: 2010-11-23T03:30:21Z [Term] @@ -24913,7 +25078,7 @@ xref: BTO:0001539 xref: CALOHA:TS-0115 xref: FMA:83808 xref: FMA:84791 -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000000 ! cell intersection_of: part_of UBERON:0007100 ! primary circulatory organ relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 @@ -24967,13 +25132,13 @@ is_a: CL:0000990 {is_inferred="true"} ! conventional dendritic cell intersection_of: CL:0000990 ! conventional dendritic cell intersection_of: CL:4030046 PR:000001004 ! lacks_plasma_membrane_part CD4 molecule intersection_of: CL:4030046 PR:000001084 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD8 alpha chain -intersection_of: has_plasma_membrane_part GO:0042613 ! MHC class II protein complex -intersection_of: has_plasma_membrane_part PR:000001293 ! C-type lectin domain family 4 member K +intersection_of: RO:0002104 GO:0042613 ! has plasma membrane part MHC class II protein complex +intersection_of: RO:0002104 PR:000001293 ! has plasma membrane part C-type lectin domain family 4 member K relationship: CL:4030046 PR:000001004 ! lacks_plasma_membrane_part CD4 molecule relationship: CL:4030046 PR:000001084 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD8 alpha chain relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_plasma_membrane_part GO:0042613 ! MHC class II protein complex -relationship: has_plasma_membrane_part PR:000001293 ! C-type lectin domain family 4 member K +relationship: RO:0002104 GO:0042613 ! has plasma membrane part MHC class II protein complex +relationship: RO:0002104 PR:000001293 ! has plasma membrane part C-type lectin domain family 4 member K creation_date: 2011-01-21T01:57:00Z [Term] @@ -25010,6 +25175,7 @@ creation_date: 2011-02-21T02:51:22Z id: CL:0002522 name: renal filtration cell def: "A renal filtration cell is a specialized cell of the renal system that filter fluids by charge, size or both." [GOC:tfm] +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0000424 ! excretory cell relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001008 ! renal system @@ -25018,11 +25184,12 @@ creation_date: 2011-02-08T01:37:59Z [Term] id: CL:0002523 name: mesonephric podocyte -def: "A specialized epithelial cell that contains \"feet\" that interdigitate with the \"feet\" of other glomerular epithelial cells in the mesonephros." [GOC:tfm] {terms:contributor="https://orcid.org/0000-0002-2244-7917"} +def: "A specialized epithelial cell that contains \"feet\" that interdigitate with the \"feet\" of other glomerular epithelial cells in the mesonephros." [GOC:tfm] synonym: "mesonephric glomerular visceral epithelial cell" EXACT [ZFA:0001674] is_a: CL:0000653 ! podocyte intersection_of: CL:0000653 ! podocyte intersection_of: part_of UBERON:0000080 ! mesonephros +relationship: dc-contributor https://orcid.org/0000-0002-2244-7917 relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000080 ! mesonephros creation_date: 2011-02-08T01:58:30Z @@ -25096,6 +25263,7 @@ name: intrahepatic cholangiocyte def: "An epithelial cell of the intrahepatic portion of the bile duct. These cells are flattened or cuboidal in shape, and have a small nuclear-to-cytoplasmic ratio relative to large/extrahepatic cholangiocytes." [GOC:tfm, PMID:23720296] subset: cellxgene_subset synonym: "small bile duct cholangiocyte" EXACT [PMID:23720296] +xref: https://cellxgene.cziscience.com/cellguide/CL_0002538 is_a: CL:1000488 {is_inferred="true"} ! cholangiocyte intersection_of: CL:1000488 ! cholangiocyte intersection_of: part_of UBERON:0004823 ! intrahepatic bile duct epithelium @@ -25149,6 +25317,7 @@ subset: human_reference_atlas synonym: "endothelial cell of vein" EXACT [] synonym: "venous endothelial cell" EXACT [] xref: FMA:62104 +xref: https://cellxgene.cziscience.com/cellguide/CL_0002543 xref: KUPO:0001099 is_a: CL:0000071 {is_inferred="true"} ! blood vessel endothelial cell intersection_of: CL:0000071 ! blood vessel endothelial cell @@ -25158,15 +25327,6 @@ relationship: part_of UBERON:0001638 ! vein relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens creation_date: 2011-02-28T03:48:11Z -[Term] -id: CL:0002546 -name: embryonic blood vessel endothelial progenitor cell -def: "An endothelial progenitor cell that participates in angiogenesis during development." [GOC:tfm] -comment: See CL:0002619. -is_a: CL:0000222 ! mesodermal cell -relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -creation_date: 2011-02-28T04:20:39Z - [Term] id: CL:0002547 name: fibroblast of the aortic adventitia @@ -25308,7 +25468,7 @@ creation_date: 2011-02-28T05:22:27Z id: CL:0002559 name: hair follicle cell def: "An animal cell that is part of a hair follicle." [GOC:tfm] -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: CL:0000000 ! cell intersection_of: part_of UBERON:0002073 ! hair follicle @@ -25400,6 +25560,7 @@ name: mesenchymal stem cell of adipose tissue def: "A mesenchymal stem cell of adipose tissue." [GOC:tfm] subset: cellxgene_subset synonym: "mesenchymal stem cell of adipose" EXACT [] +xref: https://cellxgene.cziscience.com/cellguide/CL_0002570 is_a: CL:0000134 ! mesenchymal stem cell intersection_of: CL:0000134 ! mesenchymal stem cell intersection_of: part_of UBERON:0001013 ! adipose tissue @@ -25441,6 +25602,7 @@ subset: human_reference_atlas synonym: "neurolemmocyte" EXACT [PMID:32119275, PMID:38638689] xref: BTO:0001220 xref: CALOHA:TS-0898 +xref: https://cellxgene.cziscience.com/cellguide/CL_0002573 xref: MESH:D012583 is_a: CL:0000125 ! glial cell relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 @@ -25564,6 +25726,7 @@ def: "A blood vessel endothelial cell that is part of the retina." [GOC:tfm] subset: cellxgene_subset subset: eye_upper_slim subset: human_reference_atlas +xref: https://cellxgene.cziscience.com/cellguide/CL_0002585 is_a: CL:0000071 {is_inferred="true"} ! blood vessel endothelial cell is_a: CL:0009004 ! retinal cell is_a: UBERON:0004121 ! ectoderm-derived structure @@ -25583,6 +25746,7 @@ subset: eye_upper_slim subset: human_reference_atlas xref: BTO:0004910 xref: FMA:75802 +xref: https://cellxgene.cziscience.com/cellguide/CL_0002586 is_a: CL:0000066 ! epithelial cell is_a: CL:0000149 ! visual pigment cell is_a: CL:0009004 ! retinal cell @@ -25813,7 +25977,7 @@ creation_date: 2011-03-06T06:57:33Z [Term] id: CL:0002605 name: astrocyte of the cerebral cortex -def: "An astrocyte of the cerebral cortex." [GOC:tfm] +def: "A transcriptomically distinct astrocyte that is found in the cerebral cortex." [GOC:tfm] subset: cellxgene_subset subset: human_reference_atlas is_a: CL:0012000 ! astrocyte of the forebrain @@ -25852,9 +26016,9 @@ def: "A neuron with a soma found in the hippocampus." [GOC:tfm] subset: cellxgene_subset is_a: CL:0010012 ! cerebral cortex neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:0002421 ! hippocampal formation +intersection_of: RO:0002100 UBERON:0002421 ! has soma location hippocampal formation relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_soma_location UBERON:0002421 ! hippocampal formation +relationship: RO:0002100 UBERON:0002421 ! has soma location hippocampal formation creation_date: 2011-03-06T07:31:49Z [Term] @@ -25864,9 +26028,9 @@ def: "A neuron of the raphe nuclei." [GOC:tfm] is_a: CL:0000117 {is_inferred="true"} ! CNS neuron (sensu Vertebrata) is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000117 ! CNS neuron (sensu Vertebrata) -intersection_of: has_soma_location UBERON:0004684 ! raphe nuclei +intersection_of: RO:0002100 UBERON:0004684 ! has soma location raphe nuclei relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_soma_location UBERON:0004684 ! raphe nuclei +relationship: RO:0002100 UBERON:0004684 ! has soma location raphe nuclei creation_date: 2011-03-06T07:42:06Z [Term] @@ -25876,9 +26040,9 @@ def: "A CNS neuron of the dorsal spinal cord." [GOC:tfm] is_a: CL:0000117 {is_inferred="true"} ! CNS neuron (sensu Vertebrata) is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000117 ! CNS neuron (sensu Vertebrata) -intersection_of: has_soma_location UBERON:0002256 ! dorsal horn of spinal cord +intersection_of: RO:0002100 UBERON:0002256 ! has soma location dorsal horn of spinal cord relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_soma_location UBERON:0002256 ! dorsal horn of spinal cord +relationship: RO:0002100 UBERON:0002256 ! has soma location dorsal horn of spinal cord creation_date: 2011-03-06T07:43:34Z [Term] @@ -25888,9 +26052,9 @@ def: "A neuron of the ventral spinal cord." [GOC:tfm] is_a: CL:0000117 {is_inferred="true"} ! CNS neuron (sensu Vertebrata) is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000117 ! CNS neuron (sensu Vertebrata) -intersection_of: has_soma_location UBERON:0002257 ! ventral horn of spinal cord +intersection_of: RO:0002100 UBERON:0002257 ! has soma location ventral horn of spinal cord relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_soma_location UBERON:0002257 ! ventral horn of spinal cord +relationship: RO:0002100 UBERON:0002257 ! has soma location ventral horn of spinal cord creation_date: 2011-03-06T07:46:03Z [Term] @@ -25899,9 +26063,9 @@ name: striatum neuron def: "A neuron of the striatum." [GOC:tfm] is_a: CL:0012001 ! neuron of the forebrain intersection_of: CL:0000117 ! CNS neuron (sensu Vertebrata) -intersection_of: has_soma_location UBERON:0002435 ! striatum +intersection_of: RO:0002100 UBERON:0002435 ! has soma location striatum relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_soma_location UBERON:0002435 ! striatum +relationship: RO:0002100 UBERON:0002435 ! has soma location striatum creation_date: 2011-03-06T07:47:12Z [Term] @@ -25911,9 +26075,9 @@ def: "A neuron of the substantia nigra." [GOC:tfm] is_a: CL:0000117 {is_inferred="true"} ! CNS neuron (sensu Vertebrata) is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000117 ! CNS neuron (sensu Vertebrata) -intersection_of: has_soma_location UBERON:0002038 ! substantia nigra +intersection_of: RO:0002100 UBERON:0002038 ! has soma location substantia nigra relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_soma_location UBERON:0002038 ! substantia nigra +relationship: RO:0002100 UBERON:0002038 ! has soma location substantia nigra creation_date: 2011-03-06T07:48:42Z [Term] @@ -25964,6 +26128,7 @@ id: CL:0002618 name: endothelial cell of umbilical vein def: "An endothelial cell of the umbilical vein." [GOC:tfm] xref: BTO:0004296 +xref: https://cellxgene.cziscience.com/cellguide/CL_0002618 is_a: CL:0002543 ! vein endothelial cell intersection_of: CL:0000115 ! endothelial cell intersection_of: part_of UBERON:0002066 ! umbilical vein @@ -25992,7 +26157,7 @@ creation_date: 2011-03-14T12:31:49Z id: CL:0002621 name: gingival epithelial cell def: "Any epithelial cell that is part of some gingival epithelium." [FBC:Autogenerated] -is_a: CL:0002251 ! epithelial cell of alimentary canal +is_a: CL:1001576 ! oral mucosa squamous cell intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0001949 ! gingival epithelium relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 @@ -26069,6 +26234,7 @@ def: "A basal cell in the respiratory tract." [GOC:tfm, PMID:20699479] subset: cellxgene_subset synonym: "airway basal cell" EXACT [] synonym: "airway basal stem cell" EXACT [] +xref: https://cellxgene.cziscience.com/cellguide/CL_0002633 is_a: CL:0000646 ! basal cell is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: CL:0000646 ! basal cell @@ -26288,8 +26454,8 @@ def: "A CNS interneuron located in the spinal cord." [CL:CVS] comment: Is_a interneuron, part_of UBERON:0002240. is_a: CL:0000402 {is_inferred="true"} ! CNS interneuron intersection_of: CL:0000099 ! interneuron -intersection_of: has_soma_location UBERON:0002240 ! spinal cord -relationship: has_soma_location UBERON:0002240 ! spinal cord +intersection_of: RO:0002100 UBERON:0002240 ! has soma location spinal cord +relationship: RO:0002100 UBERON:0002240 ! has soma location spinal cord [Term] id: CL:0005001 @@ -26325,6 +26491,7 @@ name: ionocyte def: "Specialized epithelial cells involved in the maintenance of osmotic homeostasis. They are characterized by abundant mitochondria and ion transporters. In amniotes, they are present in the renal system. In freshwater fish, ionocytes in the skin and gills help maintain osmotic homeostasis by absorbing salt from the external environment." [PMID:17555741, PMID:19268451] subset: cellxgene_subset subset: human_reference_atlas +xref: https://cellxgene.cziscience.com/cellguide/CL_0005006 is_a: CL:0000066 ! epithelial cell relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -26355,19 +26522,28 @@ id: CL:0005009 name: renal principal cell def: "A cuboidal epithelial cell of the kidney which regulates sodium and potassium balance. The activity of sodium and potassium channels on the apical membrane of the cell is regulated by aldosterone and vasopressin. In mammals this cell type is located in the renal collecting duct system." [CL:CVS] subset: cellxgene_subset +xref: https://cellxgene.cziscience.com/cellguide/CL_0005009 is_a: CL:0000075 ! columnar/cuboidal epithelial cell is_a: CL:0002518 ! kidney epithelial cell [Term] id: CL:0005012 name: multi-ciliated epithelial cell -def: "A ciliated epithelial cell with many cilia." [CL:CVS] +def: "A columnar/cuboidal epithelial cell with multiple motile cilia on its apical surface. These cells facilitate the movement of liquids such as mucus or cerebrospinal fluid across the epithelial surface." [CL:CVS, PMID:28400610, PMID:30422572, PMID:38032388] +comment: While the term 'multi-ciliated epithelial cell' refers to cells with multiple motile cilia, there are exceptions where epithelial cells may have multiple non-motile cilia. Examples include olfactory sensory neurons, which have non-motile cilia for sensory detection, and choroid plexus epithelial cells, which possess multiple non-motile cilia with transient motility during development. Multiciliated cells are essential for human health, and their dysfunction can lead to various diseases known as ciliopathies, such as primary ciliary dyskinesia. This condition affects the respiratory system, brain ventricles, and reproductive system, leading to chronic respiratory infections, hydrocephalus, and infertility {xref="PMID:22118931", xref="PMID:23959957", xref="PMID:26378583", xref="PMID:25729351"} subset: cellxgene_subset synonym: "MCC" RELATED OMO:0003000 [] synonym: "multi-ciliated cell" BROAD [] synonym: "multiciliated cell" BROAD [] synonym: "multiciliated epithelial cell" EXACT [] +xref: https://cellxgene.cziscience.com/cellguide/CL_0005012 is_a: CL:0000067 ! ciliated epithelial cell +is_a: CL:0000075 ! columnar/cuboidal epithelial cell +intersection_of: CL:0000075 ! columnar/cuboidal epithelial cell +intersection_of: has_part GO:0031514 ! motile cilium +intersection_of: RO:0000053 PATO:0010007 ! has characteristic multiciliated +relationship: has_part GO:0031514 ! motile cilium +relationship: RO:0000053 PATO:0010007 ! has characteristic multiciliated [Term] id: CL:0005014 @@ -26412,16 +26588,17 @@ synonym: "somatic motor neuron" EXACT [] is_a: CL:0000100 ! motor neuron is_a: CL:0000108 ! cholinergic neuron intersection_of: CL:0000100 ! motor neuron -intersection_of: synapsed_to CL:0008002 ! skeletal muscle fiber +intersection_of: RO:0002120 CL:0008002 ! synapsed to skeletal muscle fiber relationship: develops_from CL:0000031 ! neuroblast (sensu Vertebrata) relationship: part_of RO:0002577 ! system -relationship: synapsed_to CL:0008002 ! skeletal muscle fiber +relationship: RO:0002120 CL:0008002 ! synapsed to skeletal muscle fiber [Term] id: CL:0005026 name: hepatoblast def: "Multi fate stem cell that gives rise to both hepatocytes and cholangiocytes as descendants. The term often refers to fetal precursors of hepatocytes (differently from 'hepatic stem cell', usually applied to the self-renewing pool of hepatocyte precursors in the adult liver). Hepatoblasts may also be endogenous, as some stem cells found in the liver come from the bone marrow via blood circulation." [GOC:CVS, https://orcid.org/0000-0003-1940-6740, PMID:18356246, PMID:20483998, PMID:26798363] subset: cellxgene_subset +xref: https://cellxgene.cziscience.com/cellguide/CL_0005026 is_a: CL:0000048 ! multi fate stem cell property_value: seeAlso "https://github.com/obophenotype/cell-ontology/issues/800" xsd:string @@ -26431,6 +26608,7 @@ name: preameloblast def: "Skeletogenic cell that has the potential to develop into an ameloblast. Located in the inner enamel epithelium, these cells elongate, their nuclei shift distally (away from the dental papilla), and their cytoplasm becomes filled with organelles needed for synthesis and secretion of enamel proteins." [GO_REF:0000034, PMCID:PMC2737325] comment: unsure of neural crest contribution. In VSAO we have develops_from CL:0000008 is_a: CL:0000055 ! non-terminally differentiated cell +is_a: CL:0000255 ! eukaryotic cell is_a: UBERON:0004121 ! ectoderm-derived structure relationship: adjacent_to UBERON:0001763 ! odontogenic papilla relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 @@ -26453,6 +26631,7 @@ id: CL:0007002 name: precementoblast def: "Skeletogenic cell that has the potential to develop into a cementoblast." [GO_REF:0000034] is_a: CL:0000055 ! non-terminally differentiated cell +is_a: CL:0000255 ! eukaryotic cell is_a: UBERON:0004121 ! ectoderm-derived structure relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 relationship: part_of UBERON:0005176 ! tooth enamel organ @@ -26486,7 +26665,7 @@ id: CL:0007005 name: notochordal cell def: "Cell that is part of the notochord." [GO_REF:0000034] comment: NOTE: TO DO, notochord development still needs work. -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 @@ -26549,11 +26728,11 @@ subset: cellxgene_subset is_a: CL:0000029 ! neural crest derived neuron is_a: CL:0000107 ! autonomic neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:0002005 ! enteric nervous system +intersection_of: RO:0002100 UBERON:0002005 ! has soma location enteric nervous system relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 relationship: develops_from CL:0002607 ! migratory enteric neural crest cell -relationship: has_soma_location UBERON:0002005 ! enteric nervous system relationship: part_of UBERON:0002005 ! enteric nervous system +relationship: RO:0002100 UBERON:0002005 ! has soma location enteric nervous system creation_date: 2012-06-28T08:20:31Z [Term] @@ -26578,15 +26757,15 @@ xref: MESH:D018485 is_a: CL:0000188 ! cell of skeletal muscle is_a: CL:0002372 ! myotube intersection_of: CL:0000187 ! muscle cell -intersection_of: has_characteristic PATO:0001908 ! multinucleate -intersection_of: has_characteristic PATO:0002478 ! transversely striated intersection_of: has_part GO:0030017 ! sarcomere intersection_of: part_of UBERON:0001134 ! skeletal muscle tissue +intersection_of: RO:0000053 PATO:0001908 ! has characteristic multinucleate +intersection_of: RO:0000053 PATO:0002478 ! has characteristic transversely striated relationship: develops_from CL:0000515 ! skeletal muscle myoblast -relationship: has_characteristic PATO:0001908 ! multinucleate -relationship: has_characteristic PATO:0002478 ! transversely striated relationship: has_part GO:0030017 ! sarcomere relationship: part_of UBERON:0001134 ! skeletal muscle tissue +relationship: RO:0000053 PATO:0001908 ! has characteristic multinucleate +relationship: RO:0000053 PATO:0002478 ! has characteristic transversely striated [Term] id: CL:0008003 @@ -26595,12 +26774,12 @@ def: "A myotube that is part of some somatic muscle. Examples include arthropod is_a: CL:0002372 ! myotube is_a: CL:0008004 ! somatic muscle cell intersection_of: CL:0008004 ! somatic muscle cell -intersection_of: has_characteristic PATO:0001908 ! multinucleate -intersection_of: has_characteristic PATO:0002478 ! transversely striated intersection_of: has_part GO:0030017 ! sarcomere -relationship: has_characteristic PATO:0001908 ! multinucleate -relationship: has_characteristic PATO:0002478 ! transversely striated +intersection_of: RO:0000053 PATO:0001908 ! has characteristic multinucleate +intersection_of: RO:0000053 PATO:0002478 ! has characteristic transversely striated relationship: has_part GO:0030017 ! sarcomere +relationship: RO:0000053 PATO:0001908 ! has characteristic multinucleate +relationship: RO:0000053 PATO:0002478 ! has characteristic transversely striated [Term] id: CL:0008004 @@ -26611,17 +26790,17 @@ is_a: CL:0000187 ! muscle cell [Term] id: CL:0008005 name: obliquely striated somatic muscle cell -def: "A somatic muscle cell that is oblquely striated. Examples include the somatic muscles of nematodes." [PMID:8720463] -is_a: CL:0000228 ! multinucleate cell +def: "A somatic muscle cell that is obliquely striated and mononucleated. Examples include the somatic muscles of nematodes." [doi:10.3908/wormatlas.1.7, PMID:8720463] +is_a: CL:0000226 ! single nucleate cell is_a: CL:0000444 ! obliquely striated muscle cell is_a: CL:0008004 ! somatic muscle cell intersection_of: CL:0008004 ! somatic muscle cell -intersection_of: has_characteristic PATO:0001908 ! multinucleate -intersection_of: has_characteristic PATO:0002479 ! obliquely striated intersection_of: has_part GO:0030017 ! sarcomere -relationship: has_characteristic PATO:0001908 ! multinucleate -relationship: has_characteristic PATO:0002479 ! obliquely striated +intersection_of: RO:0000053 PATO:0001407 ! has characteristic mononucleate +intersection_of: RO:0000053 PATO:0002479 ! has characteristic obliquely striated relationship: has_part GO:0030017 ! sarcomere +relationship: RO:0000053 PATO:0001407 ! has characteristic mononucleate +relationship: RO:0000053 PATO:0002479 ! has characteristic obliquely striated [Term] id: CL:0008007 @@ -26639,9 +26818,9 @@ def: "A visceral muscle cell that is striated. Examples include the visceral mu is_a: CL:0000737 ! striated muscle cell is_a: CL:0008007 ! visceral muscle cell intersection_of: CL:0008007 ! visceral muscle cell -intersection_of: has_characteristic PATO:0001410 {all_some="true"} ! striated -relationship: has_characteristic PATO:0001410 ! striated +intersection_of: RO:0000053 PATO:0001410 {all_some="true"} ! has characteristic striated relationship: has_part GO:0030017 ! sarcomere +relationship: RO:0000053 PATO:0001410 ! has characteristic striated [Term] id: CL:0008009 @@ -26649,9 +26828,9 @@ name: transversely striated visceral muscle cell def: "A visceral muscle that is transversely striated. Examples include the visceral muscle cells of arthropods." [GOC:dos] is_a: CL:0008008 ! striated visceral muscle cell intersection_of: CL:0008007 ! visceral muscle cell -intersection_of: has_characteristic PATO:0002478 {all_some="true"} ! transversely striated -relationship: has_characteristic PATO:0002478 ! transversely striated +intersection_of: RO:0000053 PATO:0002478 {all_some="true"} ! has characteristic transversely striated relationship: has_part GO:0030017 ! sarcomere +relationship: RO:0000053 PATO:0002478 ! has characteristic transversely striated [Term] id: CL:0008017 @@ -26684,6 +26863,7 @@ subset: cellxgene_subset subset: human_reference_atlas synonym: "mesenchyme cell" EXACT [] is_a: CL:0000219 ! motile cell +is_a: CL:0000255 ! eukaryotic cell relationship: capable_of GO:0016477 ! cell migration relationship: part_of UBERON:0003104 ! mesenchyme relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -26694,8 +26874,8 @@ name: anterior lateral line ganglion neuron def: "Any neuron that has its soma located in some anterior lateral line ganglion." [FBC:Autogenerated] is_a: CL:2000031 ! lateral line ganglion neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:2001391 ! anterior lateral line ganglion -relationship: has_soma_location UBERON:2001391 ! anterior lateral line ganglion +intersection_of: RO:0002100 UBERON:2001391 ! has soma location anterior lateral line ganglion +relationship: RO:0002100 UBERON:2001391 ! has soma location anterior lateral line ganglion [Term] id: CL:0008022 @@ -26760,8 +26940,8 @@ synonym: "cerebral cortex interneuron" EXACT [] is_a: CL:0000402 ! CNS interneuron is_a: CL:0010012 ! cerebral cortex neuron intersection_of: CL:0000099 ! interneuron -intersection_of: has_soma_location UBERON:0000956 ! cerebral cortex -relationship: has_soma_location UBERON:0000956 ! cerebral cortex +intersection_of: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex +relationship: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex [Term] id: CL:0008033 @@ -26808,7 +26988,7 @@ def: "A large, multipolar lower motor neuron of the brainstem and spinal cord th synonym: "alpha motoneuron" EXACT [] is_a: CL:0008039 ! lower motor neuron relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 -relationship: synapsed_to CL:0008046 ! extrafusal muscle fiber +relationship: RO:0002120 CL:0008046 ! synapsed to extrafusal muscle fiber creation_date: 2020-09-23T20:16:26Z [Term] @@ -26854,8 +27034,8 @@ def: "A sensory neuron of the spinal nerve that senses body position and sends i synonym: "spinal sensory neuron" EXACT [] is_a: CL:3000004 ! peripheral sensory neuron intersection_of: CL:0000101 ! sensory neuron -intersection_of: has_soma_location UBERON:0001780 ! spinal nerve -relationship: has_soma_location UBERON:0001780 ! spinal nerve +intersection_of: RO:0002100 UBERON:0001780 ! has soma location spinal nerve +relationship: RO:0002100 UBERON:0001780 ! has soma location spinal nerve [Term] id: CL:0009001 @@ -26877,6 +27057,16 @@ intersection_of: CL:0002319 ! neural cell intersection_of: part_of UBERON:0005388 ! photoreceptor array relationship: part_of UBERON:0005388 ! photoreceptor array +[Term] +id: CL:0009005 +name: salivary gland cell +def: "Any cell in a salivary gland." [] +subset: cellxgene_subset +xref: GOC:pr +xref: http://en.wikipedia.org/wiki/Salivary_gland +is_a: CL:0000255 ! eukaryotic cell +relationship: part_of UBERON:0001044 ! saliva-secreting gland + [Term] id: CL:0009006 name: enteroendocrine cell of small intestine @@ -26929,6 +27119,7 @@ subset: cellxgene_subset subset: location_grouping synonym: "crypt stem cell of small intestine" BROAD [] synonym: "stem cell of small intestine crypt of Lieberkuhn" EXACT [] +xref: https://cellxgene.cziscience.com/cellguide/CL_0009017 is_a: CL:0002250 ! intestinal crypt stem cell is_a: CL:0002254 ! epithelial cell of small intestine intersection_of: CL:0002250 ! intestinal crypt stem cell @@ -27255,6 +27446,7 @@ name: intestinal crypt stem cell of colon def: "An intestinal crypt stem cell that is located in the colon." [http://orcid.org/0000-0003-3440-1876] subset: cellxgene_subset subset: location_grouping +xref: https://cellxgene.cziscience.com/cellguide/CL_0009043 is_a: CL:0002250 ! intestinal crypt stem cell is_a: CL:0011108 ! colon epithelial cell intersection_of: CL:0002250 ! intestinal crypt stem cell @@ -27728,21 +27920,6 @@ intersection_of: part_of UBERON:0001310 ! umbilical artery relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 relationship: part_of UBERON:0001310 ! umbilical artery -[Term] -id: CL:0010003 -name: epithelial cell of alveolus of lung -def: "An epithelial cell that is part_of a alveolus of lung." [] -comment: May be merged with pneumocyte in future -subset: cellxgene_subset -synonym: "alveolus of lung epithelial cell" EXACT [] -xref: MESH:D056809 -is_a: CL:0000066 ! epithelial cell -is_a: UBERON:0004119 ! endoderm-derived structure -intersection_of: CL:0000066 ! epithelial cell -intersection_of: part_of UBERON:0002299 ! alveolus of lung -relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 -relationship: part_of UBERON:0002299 ! alveolus of lung - [Term] id: CL:0010004 name: mononuclear cell of bone marrow @@ -27819,8 +27996,8 @@ def: "Any stellate neuron that has its soma located in some cerebellum." [FBC:Au is_a: CL:0000122 ! stellate neuron is_a: CL:1001611 ! cerebellar neuron intersection_of: CL:0000122 ! stellate neuron -intersection_of: has_soma_location UBERON:0002037 ! cerebellum -relationship: has_soma_location UBERON:0002037 ! cerebellum +intersection_of: RO:0002100 UBERON:0002037 ! has soma location cerebellum +relationship: RO:0002100 UBERON:0002037 ! has soma location cerebellum [Term] id: CL:0010011 @@ -27830,8 +28007,8 @@ subset: cellxgene_subset is_a: CL:0008031 ! cortical interneuron is_a: CL:0011005 ! GABAergic interneuron intersection_of: CL:0011005 ! GABAergic interneuron -intersection_of: has_soma_location UBERON:0000956 ! cerebral cortex -relationship: has_soma_location UBERON:0000956 ! cerebral cortex +intersection_of: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex +relationship: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex [Term] id: CL:0010012 @@ -27845,11 +28022,11 @@ xref: BTO:0004102 xref: FMA:84104 is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:0000956 ! cerebral cortex +intersection_of: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 relationship: develops_from CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: has_soma_location UBERON:0000956 ! cerebral cortex relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex property_value: seeAlso "https://github.com/obophenotype/cell-ontology/issues/1359" xsd:string [Term] @@ -27896,9 +28073,9 @@ comment: This term is used in 3 GO terms that were created as part of the heart subset: cellxgene_subset is_a: CL:0000540 ! neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:0000948 ! heart +intersection_of: RO:0002100 UBERON:0000948 ! has soma location heart relationship: develops_from CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: has_soma_location UBERON:0000948 ! heart +relationship: RO:0002100 UBERON:0000948 ! has soma location heart property_value: seeAlso "https://github.com/obophenotype/cell-ontology/pull/1488" xsd:string [Term] @@ -27908,8 +28085,8 @@ def: "A CNS interneuron located in the dorsal horn of the spinal cord." [GOC:nv] synonym: "dorsal spinal cord interneuron" RELATED [] is_a: CL:0005000 {is_inferred="true"} ! spinal cord interneuron intersection_of: CL:0000099 ! interneuron -intersection_of: has_soma_location UBERON:0002256 ! dorsal horn of spinal cord -relationship: has_soma_location UBERON:0002256 ! dorsal horn of spinal cord +intersection_of: RO:0002100 UBERON:0002256 ! has soma location dorsal horn of spinal cord +relationship: RO:0002100 UBERON:0002256 ! has soma location dorsal horn of spinal cord [Term] id: CL:0011001 @@ -27918,8 +28095,8 @@ def: "A motor neuron that passes from the spinal cord toward or to a muscle and is_a: CL:0000100 {is_inferred="true"} ! motor neuron is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000100 ! motor neuron -intersection_of: has_soma_location UBERON:0002240 ! spinal cord -relationship: has_soma_location UBERON:0002240 ! spinal cord +intersection_of: RO:0002100 UBERON:0002240 ! has soma location spinal cord +relationship: RO:0002100 UBERON:0002240 ! has soma location spinal cord [Term] id: CL:0011003 @@ -27930,7 +28107,7 @@ xref: ILX:0107463 is_a: CL:0000165 ! neuroendocrine cell is_a: CL:2000029 ! central nervous system neuron relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 -relationship: has_soma_location UBERON:0001898 ! hypothalamus +relationship: RO:0002100 UBERON:0001898 ! has soma location hypothalamus [Term] id: CL:0011004 @@ -27973,6 +28150,7 @@ id: CL:0011012 name: neural crest cell def: "A cell of the neural crest. Neural crest cells are multipotent. Premigratory neural crest cells are found at the neural plate boarder, some of which will undergo ectomesynchymal transition and delamination to form migratory neural crest cells." [https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0002-9900-7880] subset: cellxgene_subset +xref: https://cellxgene.cziscience.com/cellguide/CL_0011012 is_a: CL:0000048 ! multi fate stem cell is_a: CL:0002321 ! embryonic cell (metazoa) @@ -28034,6 +28212,7 @@ id: CL:0011026 name: progenitor cell def: "A precursor cell that has a tendency to differentiate into a specific type of cell. They are descendants of stem cells, only they are more constrained in their differentiation potential or capacity for self-renewal, and are often more limited in both senses." [https://doi.org/10.1016/B978-0-12-409503-8.00002-0, ISBN:978-1-62808-994-3] subset: cellxgene_subset +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0011115 ! precursor cell intersection_of: CL:0011115 ! precursor cell intersection_of: develops_from CL:0000034 ! stem cell @@ -28104,9 +28283,9 @@ name: spiral ganglion neuron def: "Neuron found in the spiral ganglion." [GOC:NV] is_a: CL:0000540 ! neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:0000395 ! cochlear ganglion +intersection_of: RO:0002100 UBERON:0000395 ! has soma location cochlear ganglion relationship: develops_from CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: has_soma_location UBERON:0000395 ! cochlear ganglion +relationship: RO:0002100 UBERON:0000395 ! has soma location cochlear ganglion [Term] id: CL:0011115 @@ -28142,10 +28321,10 @@ synonym: "forebrain neuron" EXACT [] is_a: CL:0000117 {is_inferred="true"} ! CNS neuron (sensu Vertebrata) is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000117 ! CNS neuron (sensu Vertebrata) -intersection_of: has_soma_location UBERON:0001890 ! forebrain +intersection_of: RO:0002100 UBERON:0001890 ! has soma location forebrain relationship: dc-contributor https://orcid.org/0000-0002-3837-8864 -relationship: has_soma_location UBERON:0001890 ! forebrain relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002100 UBERON:0001890 ! has soma location forebrain [Term] id: CL:0013000 @@ -28163,6 +28342,7 @@ name: pulmonary ionocyte def: "An ionocyte that is part of the lung epithelium. The cells from this type are major sources of the CFTR protein in human and mice." [PMID:30069044, PMID:30069046] subset: cellxgene_subset subset: human_reference_atlas +xref: https://cellxgene.cziscience.com/cellguide/CL_0017000 is_a: CL:0000082 ! epithelial cell of lung is_a: CL:0005006 ! ionocyte intersection_of: CL:0005006 ! ionocyte @@ -28203,9 +28383,9 @@ name: neutrophillic cytoplasm def: "Cytoplasm that exhibits a characteristic staining and color, pale-pink, with Wright-Giemsa stain." [GOC:add] is_a: GO:0005737 ! cytoplasm intersection_of: GO:0005737 ! cytoplasm -intersection_of: has_characteristic PATO:0070046 ! neutrophillic +intersection_of: RO:0000053 PATO:0070046 ! has characteristic neutrophillic relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_characteristic PATO:0070046 ! neutrophillic +relationship: RO:0000053 PATO:0070046 ! has characteristic neutrophillic creation_date: 2010-05-25T01:36:34Z [Term] @@ -28215,9 +28395,9 @@ def: "Cytoplasm that exhibits a characteristic staining and color, red or pink, synonym: "eosinophilic" NARROW [] is_a: GO:0005737 ! cytoplasm intersection_of: GO:0005737 ! cytoplasm -intersection_of: has_characteristic PATO:0002418 ! acidophilic +intersection_of: RO:0000053 PATO:0002418 ! has characteristic acidophilic relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_characteristic PATO:0002418 ! acidophilic +relationship: RO:0000053 PATO:0002418 ! has characteristic acidophilic creation_date: 2009-12-22T04:23:25Z [Term] @@ -28226,9 +28406,9 @@ name: basophilic cytoplasm def: "Cytoplasm that exhibits molecular interaction for basic dyes under specific pH conditions." [GOC:tfm] is_a: GO:0005737 ! cytoplasm intersection_of: GO:0005737 ! cytoplasm -intersection_of: has_characteristic PATO:0002094 ! basophilic +intersection_of: RO:0000053 PATO:0002094 ! has characteristic basophilic relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_characteristic PATO:0002094 ! basophilic +relationship: RO:0000053 PATO:0002094 ! has characteristic basophilic creation_date: 2009-12-22T04:24:54Z [Term] @@ -28237,9 +28417,9 @@ name: polychromatophilic cytoplasm def: "Cytoplasm that exhibits affinity for both basic and acid stains under specific pH conditions." [GOC:tfm] is_a: GO:0005737 ! cytoplasm intersection_of: GO:0005737 ! cytoplasm -intersection_of: has_characteristic PATO:0070047 ! polychromatophilic +intersection_of: RO:0000053 PATO:0070047 ! has characteristic polychromatophilic relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 -relationship: has_characteristic PATO:0070047 ! polychromatophilic +relationship: RO:0000053 PATO:0070047 ! has characteristic polychromatophilic creation_date: 2009-12-28T04:25:23Z [Term] @@ -28257,6 +28437,7 @@ def: "Any serous secreting cell that is part of the tracheobronchial epithelium. subset: added_for_HCA subset: cellxgene_subset synonym: "serous cell of tracheobronchial tree" EXACT [] +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0000313 ! serous secreting cell is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: CL:0000313 ! serous secreting cell @@ -28465,9 +28646,9 @@ name: retrotrapezoid nucleus neuron def: "Any neuron that has its soma located in some retrotrapezoid nucleus." [FBC:Autogenerated] is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:0009918 ! retrotrapezoid nucleus +intersection_of: RO:0002100 UBERON:0009918 ! has soma location retrotrapezoid nucleus relationship: develops_from CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: has_soma_location UBERON:0009918 ! retrotrapezoid nucleus +relationship: RO:0002100 UBERON:0009918 ! has soma location retrotrapezoid nucleus [Term] id: CL:1000022 @@ -28536,6 +28717,7 @@ id: CL:1000143 name: lung goblet cell def: "Any goblet cell that is part of some lung epithelium." [FBC:Autogenerated] subset: cellxgene_subset +xref: https://cellxgene.cziscience.com/cellguide/CL_1000143 is_a: CL:0000082 ! epithelial cell of lung is_a: CL:0002370 ! respiratory goblet cell intersection_of: CL:0000160 ! goblet cell @@ -28584,6 +28766,7 @@ subset: cellxgene_subset subset: human_reference_atlas synonym: "PNEC" RELATED OMO:0003000 [PMID:33355253] synonym: "pulmonary neuroendocrine cell" EXACT [PMID:33355253] +xref: https://cellxgene.cziscience.com/cellguide/CL_1000223 is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0000098 ! sensory epithelial cell is_a: CL:0000165 ! neuroendocrine cell @@ -28622,19 +28805,21 @@ name: posterior lateral line ganglion neuron def: "Any neuron that has its soma located in some posterior lateral line ganglion." [FBC:Autogenerated] is_a: CL:2000031 ! lateral line ganglion neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:2001314 ! posterior lateral line ganglion -relationship: has_soma_location UBERON:2001314 ! posterior lateral line ganglion +intersection_of: RO:0002100 UBERON:2001314 ! has soma location posterior lateral line ganglion +relationship: RO:0002100 UBERON:2001314 ! has soma location posterior lateral line ganglion [Term] id: CL:1000271 name: lung ciliated cell -def: "Any ciliated cell that is part of some lung." [FBC:Autogenerated] +def: "An epithelial cell that is part of the lung epithelium. This cell is characterised by the presence of cilia on its apical surface." [PMID:27864314] subset: cellxgene_subset subset: human_reference_atlas +is_a: CL:0000067 ! ciliated epithelial cell +is_a: CL:0000082 ! epithelial cell of lung is_a: CL:4030034 ! respiratory ciliated cell -intersection_of: CL:0000064 ! ciliated cell -intersection_of: part_of UBERON:0002048 ! lung -relationship: part_of UBERON:0002048 ! lung +intersection_of: CL:0000067 ! ciliated epithelial cell +intersection_of: part_of UBERON:0000115 ! lung epithelium +relationship: part_of UBERON:0000115 ! lung epithelium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] @@ -28643,6 +28828,7 @@ name: lung secretory cell def: "Any secretory cell that is part of some lung." [FBC:Autogenerated] subset: cellxgene_subset is_a: CL:0000151 ! secretory cell +is_a: CL:0000255 ! eukaryotic cell is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: CL:0000151 ! secretory cell intersection_of: part_of UBERON:0002048 ! lung @@ -29475,6 +29661,7 @@ subset: human_reference_atlas synonym: "arterial endothelial cell" EXACT [] xref: BTO:0004758 xref: FMA:67761 +xref: https://cellxgene.cziscience.com/cellguide/CL_1000413 xref: KUPO:0001095 is_a: CL:0000071 ! blood vessel endothelial cell intersection_of: CL:0000115 ! endothelial cell @@ -29658,6 +29845,7 @@ name: epithelial cell of lacrimal sac def: "An epithelial cell that is part of the lacrimal sac." [GOC:tfm] subset: cellxgene_subset xref: FMA:70560 +xref: https://cellxgene.cziscience.com/cellguide/CL_1000436 is_a: CL:1000437 ! epithelial cell of nasolacrimal duct intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0001351 ! lacrimal sac @@ -29778,6 +29966,7 @@ subset: human_reference_atlas synonym: "epithelial cell of parietal layer of glomerular capsule" EXACT [FMA:70968] xref: FMA:70968 xref: KUPO:0001035 +is_a: CL:0000076 ! squamous epithelial cell is_a: CL:1000450 ! epithelial cell of glomerular capsule intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0005750 ! glomerular parietal epithelium @@ -29803,6 +29992,7 @@ subset: human_reference_atlas subset: kidney_upper_slim synonym: "epithelial cell of renal collecting tubule" EXACT [FMA:70982] xref: FMA:70982 +xref: https://cellxgene.cziscience.com/cellguide/CL_1000454 xref: KUPO:0001059 is_a: CL:0000072 {is_inferred="true"} ! non-branched duct epithelial cell is_a: CL:1000449 ! epithelial cell of nephron @@ -29999,6 +30189,7 @@ def: "An epithelial cell that is part of the bile duct. Cholangiocytes contribut subset: cellxgene_subset synonym: "epithelial cell of bile duct" EXACT [] xref: FMA:86481 +xref: https://cellxgene.cziscience.com/cellguide/CL_1000488 is_a: CL:0000069 {is_inferred="true"} ! branched duct epithelial cell is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: CL:0000069 ! branched duct epithelial cell @@ -30039,6 +30230,7 @@ def: "A mesothelial cell that is part of the pleura." [GOC:tfm] subset: cellxgene_subset synonym: "pleural mesothelial cell" EXACT [FMA:86737] xref: FMA:86737 +xref: https://cellxgene.cziscience.com/cellguide/CL_1000491 is_a: CL:0000077 ! mesothelial cell is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure intersection_of: CL:0000077 ! mesothelial cell @@ -30062,6 +30254,7 @@ def: "A mesothelial cell that is part of the visceral pleura." [GOC:tfm] subset: cellxgene_subset subset: human_reference_atlas xref: FMA:86739 +xref: https://cellxgene.cziscience.com/cellguide/CL_1000493 is_a: CL:1000491 ! mesothelial cell of pleura intersection_of: CL:0000077 ! mesothelial cell intersection_of: part_of UBERON:0002401 ! visceral pleura @@ -30105,7 +30298,7 @@ name: kidney cell def: "A cell that is part of a kidney." [] subset: cellxgene_subset xref: KUPO:0001010 -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000000 ! cell intersection_of: part_of UBERON:0002113 ! kidney relationship: part_of UBERON:0002113 ! kidney @@ -30251,7 +30444,7 @@ id: CL:1000600 name: lower urinary tract cell def: "Any cell that is part of some lower urinary tract." [FBC:Autogenerated] xref: KUPO:0001115 -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000000 ! cell intersection_of: part_of UBERON:0001556 ! lower urinary tract relationship: part_of UBERON:0001556 ! lower urinary tract @@ -30261,7 +30454,7 @@ id: CL:1000601 name: ureteral cell def: "Any cell that is part of some ureter." [FBC:Autogenerated] xref: KUPO:0001116 -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: CL:0000000 ! cell intersection_of: part_of UBERON:0000056 ! ureter @@ -30275,9 +30468,9 @@ xref: KUPO:0001015 is_a: CL:1000500 ! kidney interstitial cell is_a: CL:2000032 ! peripheral nervous system neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:0002113 ! kidney +intersection_of: RO:0002100 UBERON:0002113 ! has soma location kidney relationship: develops_from CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: has_soma_location UBERON:0002113 ! kidney +relationship: RO:0002100 UBERON:0002113 ! has soma location kidney [Term] id: CL:1000612 @@ -30521,6 +30714,19 @@ intersection_of: CL:1000682 ! kidney medulla interstitial cell intersection_of: part_of UBERON:0005213 ! outer renal medulla interstitium relationship: part_of UBERON:0005213 ! outer renal medulla interstitium +[Term] +id: CL:1000838 +name: kidney proximal convoluted tubule epithelial cell +def: "Any epithelial cell of proximal tubule that is part of some proximal convoluted tubule and has part some brush border." [FBC:Autogenerated] +subset: cellxgene_subset +xref: KUPO:0001045 +is_a: CL:0002307 ! brush border cell of the proximal tubule +intersection_of: CL:0002306 ! epithelial cell of proximal tubule +intersection_of: has_part GO:0005903 ! brush border +intersection_of: part_of UBERON:0001287 ! proximal convoluted tubule +relationship: has_part GO:0005903 ! brush border +relationship: part_of UBERON:0001287 ! proximal convoluted tubule + [Term] id: CL:1000839 name: kidney proximal straight tubule epithelial cell @@ -30639,6 +30845,7 @@ name: glomerular capillary endothelial cell def: "An endothelial cell that is part of the glomerular capillary of the kidney." [] subset: cellxgene_subset subset: human_reference_atlas +xref: https://cellxgene.cziscience.com/cellguide/CL_1001005 xref: KUPO:0001037 is_a: CL:0002188 ! glomerular endothelial cell is_a: CL:1000892 ! kidney capillary endothelial cell @@ -30773,6 +30980,7 @@ name: kidney afferent arteriole endothelial cell def: "An endothelial cell that lines the interior surface of the afferent arteriole and maintains vascular tone. This cell responds to changing ion concentrations and blood pressure by releasing vasoactive substances, in order to regulate blood flow into the glomeruli, which is essential for glomerular filtration." [PMID:16990493, PMID:22733355, PMID:24066938, PMID:25834230] subset: cellxgene_subset subset: human_reference_atlas +xref: https://cellxgene.cziscience.com/cellguide/CL_1001096 xref: KUPO:0001039 is_a: CL:1000412 ! endothelial cell of arteriole is_a: CL:1000413 ! endothelial cell of artery @@ -30800,6 +31008,7 @@ name: kidney efferent arteriole endothelial cell def: "Any endothelial cell that is part of some renal efferent arteriole." [FBC:Autogenerated] subset: cellxgene_subset subset: human_reference_atlas +xref: https://cellxgene.cziscience.com/cellguide/CL_1001099 xref: KUPO:0001042 is_a: CL:1000412 ! endothelial cell of arteriole is_a: CL:1001009 ! kidney efferent arteriole cell @@ -30943,11 +31152,12 @@ def: "A cell that is part of some vasa recta ascending limb." [] comment: It is known in some mammalian species that this cell may express PV-1, a component of the fenestral diaphragm. {xref="PMID:20392799", xref="PMID:20392798", xref="PMID:26062876"} subset: cellxgene_subset subset: human_reference_atlas +xref: https://cellxgene.cziscience.com/cellguide/CL_1001131 xref: KUPO:0001074 is_a: CL:1001036 {is_inferred="true"} ! vasa recta cell intersection_of: CL:1001036 ! vasa recta cell -intersection_of: part_of UBERON:0009091 ! vasa recta ascending limb -relationship: part_of UBERON:0009091 ! vasa recta ascending limb +intersection_of: part_of UBERON:0009091 ! ascending vasa recta +relationship: part_of UBERON:0009091 ! ascending vasa recta relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] @@ -30998,8 +31208,8 @@ xref: KUPO:0001075 is_a: CL:1001126 {is_inferred="true"} ! inner renal medulla vasa recta cell is_a: CL:1001131 {is_inferred="true"} ! vasa recta ascending limb cell intersection_of: CL:1001131 ! vasa recta ascending limb cell -intersection_of: part_of UBERON:0009092 ! inner medulla vasa recta ascending limb -relationship: part_of UBERON:0009092 ! inner medulla vasa recta ascending limb +intersection_of: part_of UBERON:0009092 ! inner medulla ascending vasa recta +relationship: part_of UBERON:0009092 ! inner medulla ascending vasa recta [Term] id: CL:1001210 @@ -31009,8 +31219,8 @@ xref: KUPO:0001076 is_a: CL:1001127 {is_inferred="true"} ! outer renal medulla vasa recta cell is_a: CL:1001131 {is_inferred="true"} ! vasa recta ascending limb cell intersection_of: CL:1001131 ! vasa recta ascending limb cell -intersection_of: part_of UBERON:0009093 ! outer medulla vasa recta ascending limb -relationship: part_of UBERON:0009093 ! outer medulla vasa recta ascending limb +intersection_of: part_of UBERON:0009093 ! outer medulla ascending vasa recta +relationship: part_of UBERON:0009093 ! outer medulla ascending vasa recta [Term] id: CL:1001213 @@ -31119,11 +31329,12 @@ def: "A cell that is part of some vasa recta descending limb." [] comment: It is known in some mammalian species that this cell may express the urea transporter B. {xref="PMID:20392799", xref="PMID:20392798", xref="PMID:26062876"} subset: cellxgene_subset subset: human_reference_atlas +xref: https://cellxgene.cziscience.com/cellguide/CL_1001285 xref: KUPO:0001071 is_a: CL:1001036 {is_inferred="true"} ! vasa recta cell intersection_of: CL:1001036 ! vasa recta cell -intersection_of: part_of UBERON:0009202 ! vasa recta descending limb -relationship: part_of UBERON:0009202 ! vasa recta descending limb +intersection_of: part_of UBERON:0009202 ! descending vasa recta +relationship: part_of UBERON:0009202 ! descending vasa recta relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] @@ -31134,8 +31345,8 @@ xref: KUPO:0001072 is_a: CL:1001126 {is_inferred="true"} ! inner renal medulla vasa recta cell is_a: CL:1001285 {is_inferred="true"} ! vasa recta descending limb cell intersection_of: CL:1001285 ! vasa recta descending limb cell -intersection_of: part_of UBERON:0009089 ! inner medulla vasa recta descending limb -relationship: part_of UBERON:0009089 ! inner medulla vasa recta descending limb +intersection_of: part_of UBERON:0009089 ! inner medulla descending vasa recta +relationship: part_of UBERON:0009089 ! inner medulla descending vasa recta [Term] id: CL:1001287 @@ -31145,8 +31356,8 @@ xref: KUPO:0001073 is_a: CL:1001127 {is_inferred="true"} ! outer renal medulla vasa recta cell is_a: CL:1001285 {is_inferred="true"} ! vasa recta descending limb cell intersection_of: CL:1001285 ! vasa recta descending limb cell -intersection_of: part_of UBERON:0009090 ! outer medulla vasa recta descending limb -relationship: part_of UBERON:0009090 ! outer medulla vasa recta descending limb +intersection_of: part_of UBERON:0009090 ! outer medulla descending vasa recta +relationship: part_of UBERON:0009090 ! outer medulla descending vasa recta [Term] id: CL:1001318 @@ -31224,6 +31435,7 @@ name: kidney collecting duct principal cell def: "Any renal principal cell that is part of some collecting duct of renal tubule." [FBC:Autogenerated] subset: cellxgene_subset subset: human_reference_atlas +xref: https://cellxgene.cziscience.com/cellguide/CL_1001431 xref: KUPO:0001128 is_a: CL:0005009 {is_inferred="true"} ! renal principal cell is_a: CL:1000454 ! kidney collecting duct epithelial cell @@ -31254,10 +31466,10 @@ is_a: CL:0000101 ! sensory neuron is_a: CL:0000402 ! CNS interneuron is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: CL:0000099 ! interneuron -intersection_of: has_soma_location UBERON:0002264 ! olfactory bulb +intersection_of: RO:0002100 UBERON:0002264 ! has soma location olfactory bulb relationship: develops_from CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: has_soma_location UBERON:0002264 ! olfactory bulb relationship: part_of UBERON:0002264 ! olfactory bulb +relationship: RO:0002100 UBERON:0002264 ! has soma location olfactory bulb [Term] id: CL:1001451 @@ -31268,16 +31480,16 @@ is_a: CL:0000006 ! neuronal receptor cell is_a: CL:4023168 ! somatosensory neuron is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: CL:0000101 ! sensory neuron -intersection_of: has_soma_location UBERON:0000044 ! dorsal root ganglion -relationship: has_soma_location UBERON:0000044 ! dorsal root ganglion +intersection_of: RO:0002100 UBERON:0000044 ! has soma location dorsal root ganglion relationship: part_of UBERON:0000044 ! dorsal root ganglion +relationship: RO:0002100 UBERON:0000044 ! has soma location dorsal root ganglion [Term] id: CL:1001502 name: mitral cell def: "The large glutaminergic nerve cells whose dendrites synapse with axons of the olfactory receptor neurons in the glomerular layer of the olfactory bulb, and whose axons pass centrally in the olfactory tract to the olfactory cortex." [MP:0009954] is_a: CL:1001434 ! olfactory bulb interneuron -relationship: has_soma_location UBERON:0004186 ! olfactory bulb mitral cell layer +relationship: RO:0002100 UBERON:0004186 ! has soma location olfactory bulb mitral cell layer [Term] id: CL:1001503 @@ -31357,8 +31569,8 @@ xref: FMA:84777 is_a: CL:0002608 ! hippocampal neuron is_a: CL:0008031 ! cortical interneuron intersection_of: CL:0000099 ! interneuron -intersection_of: has_soma_location UBERON:0002421 ! hippocampal formation -relationship: has_soma_location UBERON:0002421 ! hippocampal formation +intersection_of: RO:0002100 UBERON:0002421 ! has soma location hippocampal formation +relationship: RO:0002100 UBERON:0002421 ! has soma location hippocampal formation [Term] id: CL:1001571 @@ -31372,9 +31584,9 @@ is_a: CL:0002608 ! hippocampal neuron is_a: CL:4023111 ! cerebral cortex pyramidal neuron is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: CL:0000598 ! pyramidal neuron -intersection_of: has_soma_location UBERON:0002421 ! hippocampal formation -relationship: has_soma_location UBERON:0002421 ! hippocampal formation +intersection_of: RO:0002100 UBERON:0002421 ! has soma location hippocampal formation relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer +relationship: RO:0002100 UBERON:0002421 ! has soma location hippocampal formation [Term] id: CL:1001572 @@ -31513,8 +31725,8 @@ synonym: "lateral ventricle neuronal cells" RELATED [CALOHA:TS-1261] xref: CALOHA:TS-1261 is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:0002285 ! telencephalic ventricle -relationship: has_soma_location UBERON:0002285 ! telencephalic ventricle +intersection_of: RO:0002100 UBERON:0002285 ! has soma location telencephalic ventricle +relationship: RO:0002100 UBERON:0002285 ! has soma location telencephalic ventricle [Term] id: CL:1001585 @@ -31667,6 +31879,7 @@ xref: CALOHA:TS-1282 is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0000152 ! exocrine cell is_a: CL:0002251 ! epithelial cell of alimentary canal +is_a: CL:0009005 ! salivary gland cell intersection_of: CL:0000150 ! glandular epithelial cell intersection_of: part_of UBERON:0001044 ! saliva-secreting gland relationship: part_of UBERON:0001044 ! saliva-secreting gland @@ -31679,6 +31892,7 @@ def: "Glandular cell of seminal vesicle epithelium." [NPX:PDR] subset: cellxgene_subset synonym: "seminal vesicle glandular cells" RELATED [CALOHA:TS-1283] xref: CALOHA:TS-1283 +xref: https://cellxgene.cziscience.com/cellguide/CL_1001597 is_a: CL:0000068 ! duct epithelial cell is_a: CL:0000150 ! glandular epithelial cell is_a: UBERON:0004120 ! mesoderm-derived structure @@ -31739,7 +31953,7 @@ relationship: part_of UBERON:0001235 ! adrenal cortex [Term] id: CL:1001602 name: cerebral cortex endothelial cell -def: "Endothelial cells forming the walls of the capillaries within the cerebral cortex." [NPX:PDR] +def: "A distinct endothelial cell forming the walls of the capillaries within the cerebral cortex." [NPX:PDR] subset: cellxgene_subset synonym: "cerebral cortex endothelial cells" RELATED [CALOHA:TS-2372] synonym: "endothelial cells of cerebral cortex" RELATED [CALOHA:TS-2372] @@ -31833,9 +32047,9 @@ xref: CALOHA:TS-2359 xref: FMA:84665 is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:0002037 ! cerebellum +intersection_of: RO:0002100 UBERON:0002037 ! has soma location cerebellum relationship: develops_from CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: has_soma_location UBERON:0002037 ! cerebellum +relationship: RO:0002100 UBERON:0002037 ! has soma location cerebellum [Term] id: CL:2000000 @@ -32060,7 +32274,7 @@ creation_date: 2014-06-24T23:16:45Z id: CL:2000020 name: inner cell mass cell def: "Any native cell that is part of a inner cell mass." [GOC:TermGenie] -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000000 ! cell intersection_of: part_of UBERON:0000087 ! inner cell mass relationship: dc-contributor http://www.wikidata.org/entity/Q35563349 @@ -32072,7 +32286,7 @@ id: CL:2000021 name: sebaceous gland cell def: "Any native cell that is part of a sebaceous gland." [GOC:TermGenie] subset: cellxgene_subset -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: CL:0000000 ! cell intersection_of: part_of UBERON:0001821 ! sebaceous gland @@ -32098,9 +32312,9 @@ name: spinal cord ventral column interneuron def: "Any interneuron that is part of a spinal cord ventral column." [GOC:TermGenie] is_a: CL:0005000 ! spinal cord interneuron intersection_of: CL:0000099 ! interneuron -intersection_of: has_soma_location UBERON:0005375 ! spinal cord ventral column +intersection_of: RO:0002100 UBERON:0005375 ! has soma location spinal cord ventral column relationship: dc-contributor http://www.wikidata.org/entity/Q35563349 -relationship: has_soma_location UBERON:0005375 ! spinal cord ventral column +relationship: RO:0002100 UBERON:0005375 ! has soma location spinal cord ventral column creation_date: 2014-06-25T00:23:36Z [Term] @@ -32109,9 +32323,9 @@ name: spinal cord medial motor column neuron def: "Any neuron that is part of a spinal cord medial motor column." [GOC:TermGenie] is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:0004059 ! spinal cord medial motor column +intersection_of: RO:0002100 UBERON:0004059 ! has soma location spinal cord medial motor column relationship: dc-contributor http://www.wikidata.org/entity/Q35563349 -relationship: has_soma_location UBERON:0004059 ! spinal cord medial motor column +relationship: RO:0002100 UBERON:0004059 ! has soma location spinal cord medial motor column creation_date: 2014-06-25T00:23:43Z [Term] @@ -32133,9 +32347,9 @@ is_a: CL:0000118 ! basket cell is_a: CL:0000402 ! CNS interneuron is_a: CL:1001611 ! cerebellar neuron intersection_of: CL:0000118 ! basket cell -intersection_of: has_soma_location UBERON:0002037 ! cerebellum +intersection_of: RO:0002100 UBERON:0002037 ! has soma location cerebellum relationship: dc-contributor http://www.wikidata.org/entity/Q35563349 -relationship: has_soma_location UBERON:0002037 ! cerebellum +relationship: RO:0002100 UBERON:0002037 ! has soma location cerebellum creation_date: 2014-06-25T00:24:03Z [Term] @@ -32145,9 +32359,9 @@ def: "Any glutamatergic neuron that is part of a cerebellum." [GOC:TermGenie] is_a: CL:0000679 ! glutamatergic neuron is_a: CL:1001611 ! cerebellar neuron intersection_of: CL:0000679 ! glutamatergic neuron -intersection_of: has_soma_location UBERON:0002037 ! cerebellum +intersection_of: RO:0002100 UBERON:0002037 ! has soma location cerebellum relationship: dc-contributor http://www.wikidata.org/entity/Q35563349 -relationship: has_soma_location UBERON:0002037 ! cerebellum +relationship: RO:0002100 UBERON:0002037 ! has soma location cerebellum creation_date: 2014-06-25T00:24:10Z [Term] @@ -32156,9 +32370,9 @@ name: central nervous system neuron def: "Any neuron that is part of a central nervous system." [GOC:TermGenie] is_a: CL:0000540 ! neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:0001017 ! central nervous system +intersection_of: RO:0002100 UBERON:0001017 ! has soma location central nervous system relationship: dc-contributor http://www.wikidata.org/entity/Q35563349 -relationship: has_soma_location UBERON:0001017 ! central nervous system +relationship: RO:0002100 UBERON:0001017 ! has soma location central nervous system creation_date: 2014-06-25T01:17:43Z [Term] @@ -32179,10 +32393,10 @@ name: lateral line ganglion neuron def: "Any neuron that is part of a lateral line ganglion." [GOC:TermGenie] is_a: CL:0000540 ! neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:2000120 ! lateral line ganglion +intersection_of: RO:0002100 UBERON:2000120 ! has soma location lateral line ganglion relationship: dc-contributor http://www.wikidata.org/entity/Q35563349 relationship: develops_from CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: has_soma_location UBERON:2000120 ! lateral line ganglion +relationship: RO:0002100 UBERON:2000120 ! has soma location lateral line ganglion creation_date: 2014-06-25T01:17:57Z [Term] @@ -32196,10 +32410,10 @@ synonym: "PNS neuron" EXACT [] xref: FMA:84664 is_a: CL:0000540 ! neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:0000010 ! peripheral nervous system +intersection_of: RO:0002100 UBERON:0000010 ! has soma location peripheral nervous system relationship: dc-contributor http://www.wikidata.org/entity/Q35563349 -relationship: has_soma_location UBERON:0000010 ! peripheral nervous system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002100 UBERON:0000010 ! has soma location peripheral nervous system creation_date: 2014-06-25T02:28:17Z [Term] @@ -32332,10 +32546,10 @@ def: "Any motor neuron that is part of a brainstem." [GOC:TermGenie] is_a: CL:0000100 ! motor neuron is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000100 ! motor neuron -intersection_of: has_soma_location UBERON:0002298 ! brainstem +intersection_of: RO:0002100 UBERON:0002298 ! has soma location brainstem relationship: dc-contributor http://www.wikidata.org/entity/Q35563349 relationship: develops_from CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: has_soma_location UBERON:0002298 ! brainstem +relationship: RO:0002100 UBERON:0002298 ! has soma location brainstem creation_date: 2014-10-02T23:52:53Z [Term] @@ -32345,9 +32559,9 @@ def: "Any pyramidal cell that is part of a primary motor cortex." [GOC:TermGenie comment: http://www.ncbi.nlm.nih.gov/pubmed/12524689 is_a: CL:4023111 ! cerebral cortex pyramidal neuron intersection_of: CL:0000598 ! pyramidal neuron -intersection_of: has_soma_location UBERON:0001384 ! primary motor cortex +intersection_of: RO:0002100 UBERON:0001384 ! has soma location primary motor cortex relationship: dc-contributor http://www.wikidata.org/entity/Q35563349 -relationship: has_soma_location UBERON:0001384 ! primary motor cortex +relationship: RO:0002100 UBERON:0001384 ! has soma location primary motor cortex creation_date: 2014-10-06T17:39:04Z [Term] @@ -32770,9 +32984,9 @@ def: "Any basket cell that is part of a neocortex." [GOC:TermGenie] is_a: CL:0000118 ! basket cell is_a: CL:0010011 ! cerebral cortex GABAergic interneuron intersection_of: CL:0000118 ! basket cell -intersection_of: has_soma_location UBERON:0001950 ! neocortex +intersection_of: RO:0002100 UBERON:0001950 ! has soma location neocortex relationship: dc-contributor http://www.wikidata.org/entity/Q35563349 -relationship: has_soma_location UBERON:0001950 ! neocortex +relationship: RO:0002100 UBERON:0001950 ! has soma location neocortex creation_date: 2014-12-24T00:37:19Z [Term] @@ -32784,9 +32998,9 @@ is_a: CL:0010011 ! cerebral cortex GABAergic interneuron is_a: CL:1001569 ! hippocampal interneuron is_a: CL:4023062 ! dentate gyrus neuron intersection_of: CL:0000118 ! basket cell -intersection_of: has_soma_location UBERON:0001885 ! dentate gyrus of hippocampal formation +intersection_of: RO:0002100 UBERON:0001885 ! has soma location dentate gyrus of hippocampal formation relationship: dc-contributor http://www.wikidata.org/entity/Q35563349 -relationship: has_soma_location UBERON:0001885 ! dentate gyrus of hippocampal formation +relationship: RO:0002100 UBERON:0001885 ! has soma location dentate gyrus of hippocampal formation creation_date: 2014-12-24T00:37:24Z [Term] @@ -32797,9 +33011,9 @@ is_a: CL:0000118 ! basket cell is_a: CL:0010011 ! cerebral cortex GABAergic interneuron is_a: CL:1001569 ! hippocampal interneuron intersection_of: CL:0000118 ! basket cell -intersection_of: has_soma_location UBERON:0001954 ! Ammon's horn +intersection_of: RO:0002100 UBERON:0001954 ! has soma location Ammon's horn relationship: dc-contributor http://www.wikidata.org/entity/Q35563349 -relationship: has_soma_location UBERON:0001954 ! Ammon's horn +relationship: RO:0002100 UBERON:0001954 ! has soma location Ammon's horn creation_date: 2014-12-24T00:37:30Z [Term] @@ -32811,9 +33025,9 @@ synonym: "dentate gyrus of hippocampal formation granule cell" EXACT [] is_a: CL:0001033 ! hippocampal granule cell is_a: CL:4023062 ! dentate gyrus neuron intersection_of: CL:0001033 ! hippocampal granule cell -intersection_of: has_soma_location UBERON:0005381 ! dentate gyrus granule cell layer +intersection_of: RO:0002100 UBERON:0005381 ! has soma location dentate gyrus granule cell layer relationship: dc-contributor http://www.wikidata.org/entity/Q35563349 -relationship: has_soma_location UBERON:0005381 ! dentate gyrus granule cell layer +relationship: RO:0002100 UBERON:0005381 ! has soma location dentate gyrus granule cell layer creation_date: 2015-02-23T05:48:23Z [Term] @@ -32824,9 +33038,9 @@ is_a: CL:0000122 ! stellate neuron is_a: CL:0012001 ! neuron of the forebrain is_a: CL:4023062 ! dentate gyrus neuron intersection_of: CL:0000122 ! stellate neuron -intersection_of: has_soma_location UBERON:0001885 ! dentate gyrus of hippocampal formation +intersection_of: RO:0002100 UBERON:0001885 ! has soma location dentate gyrus of hippocampal formation relationship: dc-contributor http://www.wikidata.org/entity/Q35563349 -relationship: has_soma_location UBERON:0001885 ! dentate gyrus of hippocampal formation +relationship: RO:0002100 UBERON:0001885 ! has soma location dentate gyrus of hippocampal formation creation_date: 2015-02-23T05:48:40Z [Term] @@ -32899,9 +33113,9 @@ def: "Any dopaminergic neuron that is part of a midbrain." [GOC:TermGenie] is_a: CL:0000700 ! dopaminergic neuron is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000700 ! dopaminergic neuron -intersection_of: has_soma_location UBERON:0001891 ! midbrain +intersection_of: RO:0002100 UBERON:0001891 ! has soma location midbrain relationship: dc-contributor http://www.wikidata.org/entity/Q35563349 -relationship: has_soma_location UBERON:0001891 ! midbrain +relationship: RO:0002100 UBERON:0001891 ! has soma location midbrain creation_date: 2015-12-03T16:42:40Z [Term] @@ -32992,16 +33206,18 @@ property_value: dc-contributor "https://orcid.org/0000-0002-7073-9172" xsd:strin [Term] id: CL:4023038 name: L6b glutamatergic cortical neuron -def: "A glutamatergic neuron with a soma found in cortical layer 6b. They are transcriptomically related to corticothalamic-projecting neurons but have differential projections to the thalamus or anterior cingulate." [DOI:10.1101/2020.10.19.34312, PMID:30382198, PMID:37824655] +def: "A glutamatergic neuron with a soma found in cortical layer 6b. They are transcriptomically related to corticothalamic-projecting neurons but have differential projections to the thalamus or anterior cingulate. The standard transcriptomic reference data for this cell type can be found on the CellxGene census under the collection: 'Transcriptomic cytoarchitecture reveals principles of human neocortex organization', dataset: 'Supercluster: Deep layer (non-IT) excitatory neuron', Author Categories: 'CrossArea_subclass', cluster L6b." [DOI:10.1101/2020.10.19.34312, https://cellxgene.cziscience.com/e/d01c9dff-abd1-4825-bf30-2eb2ba74597e.cxg/, PMID:30382198, PMID:37824655] subset: BDS_subset subset: cellxgene_subset +subset: human_reference_atlas xref: ILX:0770163 is_a: CL:0000679 ! glutamatergic neuron is_a: CL:0010012 ! cerebral cortex neuron intersection_of: CL:0000679 ! glutamatergic neuron -intersection_of: has_soma_location UBERON:8440003 ! cortical layer VIb +intersection_of: RO:0002100 UBERON:8440003 ! has soma location cortical layer VIb relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 -relationship: has_soma_location UBERON:8440003 ! cortical layer VIb +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002100 UBERON:8440003 ! has soma location cortical layer VIb [Term] id: CL:4023039 @@ -33013,11 +33229,11 @@ is_a: CL:0000679 ! glutamatergic neuron is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000540 ! neuron intersection_of: capable_of GO:0061535 ! glutamate secretion, neurotransmission -intersection_of: has_soma_location UBERON:0001876 ! amygdala +intersection_of: RO:0002100 UBERON:0001876 ! has soma location amygdala relationship: capable_of GO:0061535 ! glutamate secretion, neurotransmission relationship: dc-contributor http://orcid.org/0000-0001-7258-9596 -relationship: has_soma_location UBERON:0001876 ! amygdala relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002100 UBERON:0001876 ! has soma location amygdala [Term] id: CL:4023057 @@ -33029,10 +33245,10 @@ is_a: CL:0000402 ! CNS interneuron is_a: CL:0011005 ! GABAergic interneuron is_a: CL:1001611 ! cerebellar neuron intersection_of: CL:0011005 ! GABAergic interneuron -intersection_of: has_soma_location UBERON:0002129 ! cerebellar cortex +intersection_of: RO:0002100 UBERON:0002129 ! has soma location cerebellar cortex relationship: dc-contributor http://orcid.org/0000-0001-7258-9596 -relationship: has_soma_location UBERON:0002129 ! cerebellar cortex relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002100 UBERON:0002129 ! has soma location cerebellar cortex [Term] id: CL:4023062 @@ -33041,10 +33257,10 @@ def: "A neuron with its soma located in the dentate gyrus of the hippocampus." [ subset: human_reference_atlas is_a: CL:0002608 ! hippocampal neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:0001885 ! dentate gyrus of hippocampal formation +intersection_of: RO:0002100 UBERON:0001885 ! has soma location dentate gyrus of hippocampal formation relationship: dc-contributor http://orcid.org/0000-0001-7258-9596 -relationship: has_soma_location UBERON:0001885 ! dentate gyrus of hippocampal formation relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002100 UBERON:0001885 ! has soma location dentate gyrus of hippocampal formation [Term] id: CL:4023063 @@ -33061,12 +33277,11 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:4023064 -name: caudal ganglionic eminence derived interneuron +name: caudal ganglionic eminence derived cortical interneuron def: "An interneuron that is derived from the caudal ganglionic eminence." [PMID:20130169, PMID:37824655, PMID:37824663] subset: human_reference_atlas synonym: "caudal ganglionic eminence derived GABAergic cortical interneuron" EXACT [PMID:20130169] synonym: "CGE cortical interneuron" RELATED OMO:0003000 [PMID:20130169] -synonym: "CGE interneuron" EXACT OMO:0003000 [PMID:37824663] synonym: "CGE interneuron" RELATED OMO:0003000 [PMID:37824663] synonym: "CGE-derived cell" RELATED OMO:0003000 [PMID:27034423] synonym: "CGE-derived GABAergic IN" RELATED OMO:0003000 [PMID:27034423] @@ -33087,11 +33302,11 @@ is_a: CL:0000679 ! glutamatergic neuron is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000540 ! neuron intersection_of: capable_of GO:0061535 ! glutamate secretion, neurotransmission -intersection_of: has_soma_location UBERON:0010225 ! thalamic complex +intersection_of: RO:0002100 UBERON:0010225 ! has soma location thalamic complex relationship: capable_of GO:0061535 ! glutamate secretion, neurotransmission relationship: dc-contributor http://orcid.org/0000-0001-7258-9596 -relationship: has_soma_location UBERON:0010225 ! thalamic complex relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002100 UBERON:0010225 ! has soma location thalamic complex [Term] id: CL:4023069 @@ -33103,11 +33318,11 @@ is_a: CL:4023063 ! medial ganglionic eminence derived interneuron intersection_of: CL:0000099 ! interneuron intersection_of: capable_of GO:0061534 ! gamma-aminobutyric acid secretion, neurotransmission intersection_of: develops_from UBERON:0004024 ! medial ganglionic eminence -intersection_of: has_soma_location UBERON:0000956 ! cerebral cortex +intersection_of: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex relationship: capable_of GO:0061534 ! gamma-aminobutyric acid secretion, neurotransmission relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 relationship: develops_from UBERON:0004024 ! medial ganglionic eminence -relationship: has_soma_location UBERON:0000956 ! cerebral cortex +relationship: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex [Term] id: CL:4023072 @@ -33129,10 +33344,10 @@ def: "A neuron that has its soma located in the mammillary body." [DOI:10.1101/2 subset: human_reference_atlas is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:0002206 ! mammillary body +intersection_of: RO:0002100 UBERON:0002206 ! has soma location mammillary body relationship: dc-contributor http://orcid.org/0000-0001-7258-9596 -relationship: has_soma_location UBERON:0002206 ! mammillary body relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0002100 UBERON:0002206 ! has soma location mammillary body [Term] id: CL:4023079 @@ -33154,12 +33369,12 @@ def: "A neuron with soma location in the reticular formation with axons that ext synonym: "RSN" EXACT [PMID:29720934] is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:0002275 ! reticular formation -intersection_of: has_synaptic_IO_in_region UBERON:0002240 ! spinal cord +intersection_of: RO:0002100 UBERON:0002275 ! has soma location reticular formation +intersection_of: RO:0013001 UBERON:0002240 ! has synaptic IO in region spinal cord relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 relationship: develops_from CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: has_soma_location UBERON:0002275 ! reticular formation -relationship: has_synaptic_IO_in_region UBERON:0002240 ! spinal cord +relationship: RO:0002100 UBERON:0002275 ! has soma location reticular formation +relationship: RO:0013001 UBERON:0002240 ! has synaptic IO in region spinal cord [Term] id: CL:4023109 @@ -33179,9 +33394,9 @@ def: "A pyramidal neuron with soma located in the amygdala." [PMID:1375860] is_a: CL:0000598 ! pyramidal neuron is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000598 ! pyramidal neuron -intersection_of: has_soma_location UBERON:0001876 ! amygdala +intersection_of: RO:0002100 UBERON:0001876 ! has soma location amygdala relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 -relationship: has_soma_location UBERON:0001876 ! amygdala +relationship: RO:0002100 UBERON:0001876 ! has soma location amygdala [Term] id: CL:4023111 @@ -33190,9 +33405,9 @@ def: "A pyramidal neuron with soma located in the cerebral cortex." [PMID:307152 is_a: CL:0000598 ! pyramidal neuron is_a: CL:0010012 ! cerebral cortex neuron intersection_of: CL:0000598 ! pyramidal neuron -intersection_of: has_soma_location UBERON:0000956 ! cerebral cortex +intersection_of: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 -relationship: has_soma_location UBERON:0000956 ! cerebral cortex +relationship: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex [Term] id: CL:4023120 @@ -33238,9 +33453,9 @@ synonym: "K cell" EXACT [PMID:10845061] xref: NIFEXT:44 is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000540 ! neuron -intersection_of: has_soma_location UBERON:0013615 ! koniocellular layer of dorsal nucleus of lateral geniculate body +intersection_of: RO:0002100 UBERON:0013615 ! has soma location koniocellular layer of dorsal nucleus of lateral geniculate body relationship: dc-contributor http://orcid.org/0000-0001-7258-9596 -relationship: has_soma_location UBERON:0013615 ! koniocellular layer of dorsal nucleus of lateral geniculate body +relationship: RO:0002100 UBERON:0013615 ! has soma location koniocellular layer of dorsal nucleus of lateral geniculate body [Term] id: CL:4028001 @@ -33283,23 +33498,75 @@ property_value: dcterms-date "2022-07-08T11:39:38Z" xsd:dateTime [Term] id: CL:4030008 name: pronephric podocyte -def: "A specialized epithelial cell that contains \"feet\" that interdigitate with the \"feet\" of other glomerular epithelial cells in the pronephros." [PMID:10322630] {terms:contributor="https://orcid.org/0000-0002-2244-7917"} +def: "A specialized epithelial cell that contains \"feet\" that interdigitate with the \"feet\" of other glomerular epithelial cells in the pronephros." [PMID:10322630] synonym: "pronephric glomerular visceral epithelial cell" EXACT [ZFA:0001673] is_a: CL:0000653 ! podocyte intersection_of: CL:0000653 ! podocyte intersection_of: part_of UBERON:0002120 ! pronephros +relationship: dc-contributor https://orcid.org/0000-0002-2244-7917 relationship: part_of UBERON:0002120 ! pronephros property_value: dcterms-date "2022-03-11T14:38:32Z" xsd:dateTime +[Term] +id: CL:4030009 +name: epithelial cell of proximal tubule segment 1 +def: "A brush border cell that is part of segment 1 (S1) of the proximal tubule epithelium, located in the renal cortex." [PMID:23799132, PMID:23897681, PMID:31249312] +subset: cellxgene_subset +subset: human_reference_atlas +synonym: "epithelial cell of segment 1 of proximal tubule" EXACT [] +is_a: CL:1000838 ! kidney proximal convoluted tubule epithelial cell +intersection_of: CL:0000066 ! epithelial cell +intersection_of: has_part GO:0005903 ! brush border +intersection_of: part_of UBERON:0004196 ! proximal convoluted tubule segment 1 +relationship: has_part GO:0005903 ! brush border +relationship: part_of UBERON:0004196 ! proximal convoluted tubule segment 1 +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dcterms-date "2022-05-10T13:14:00Z" xsd:dateTime + +[Term] +id: CL:4030010 +name: epithelial cell of proximal tubule segment 2 +def: "A brush border cell that is part of segment 2 (S2) of the proximal tubule epithelium, located in the renal cortex. In addition to its reabsorptive functions, it is also specialized in the secretion of organic anions and cations, including para-aminohippurate." [PMID:23799132, PMID:23897681, PMID:31249312, PMID:31253652] +subset: human_reference_atlas +synonym: "epithelial cell of segment 2 of proximal tubule" EXACT [] +is_a: CL:1000838 ! kidney proximal convoluted tubule epithelial cell +intersection_of: CL:0000066 ! epithelial cell +intersection_of: has_part GO:0005903 ! brush border +intersection_of: part_of UBERON:0004197 ! proximal convoluted tubule segment 2 +relationship: has_part GO:0005903 ! brush border +relationship: part_of UBERON:0004197 ! proximal convoluted tubule segment 2 +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dcterms-date "2022-05-10T13:26:13Z" xsd:dateTime + +[Term] +id: CL:4030011 +name: epithelial cell of proximal tubule segment 3 +def: "A brush border cell that is part of segment 3 (S3) of the proximal tubule epithelium, which extends from the medullary rays of the renal cortex into the outer medulla." [PMID:23799132, PMID:31249312] +comment: The epithelial cell of proximal tubule segment 3 operates under relatively hypoxic conditions and is particularly susceptible to ischemic injury. {xref="PMID:31249312"} +subset: cellxgene_subset +subset: human_reference_atlas +synonym: "epithelial cell of segment 3 of proximal tubule" EXACT [] +is_a: CL:0002307 ! brush border cell of the proximal tubule +is_a: CL:1000839 ! kidney proximal straight tubule epithelial cell +intersection_of: CL:0000066 ! epithelial cell +intersection_of: has_part GO:0005903 ! brush border +intersection_of: part_of UBERON:0001290 ! proximal straight tubule +relationship: has_part GO:0005903 ! brush border +relationship: part_of UBERON:0001290 ! proximal straight tubule +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dcterms-date "2022-05-10T13:31:06Z" xsd:dateTime + [Term] id: CL:4030012 name: kidney loop of Henle short descending thin limb epithelial cell -def: "Epithelial cell of the descending thin limb of the short loop (cortical) nephron limited to the outer medulla (mainly inner strip). It is known in some mammalian species that the short descending limb of the loop of Henle selectively expresses the serine protease Corin, the homeobox TF Uncx, and the urea channel Slc14a2." [PMID:33769951] {terms:contributor="https://orcid.org/0000-0003-2804-127X"} +def: "Epithelial cell of the descending thin limb of the short loop (cortical) nephron limited to the outer medulla (mainly inner strip). It is known in some mammalian species that the short descending limb of the loop of Henle selectively expresses the serine protease Corin, the homeobox TF Uncx, and the urea channel Slc14a2." [PMID:33769951] subset: human_reference_atlas synonym: "epithelial cell of the descending thin limb of the short loop of Henle" EXACT [] +is_a: CL:0000076 ! squamous epithelial cell is_a: CL:1001111 ! kidney loop of Henle thin descending limb epithelial cell intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0005099 ! short descending thin limb +relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0005099 ! short descending thin limb relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2022-05-13T11:00:29Z" xsd:dateTime @@ -33402,7 +33669,7 @@ property_value: dcterms-date "2022-11-04T14:40:00Z" xsd:dateTime id: CL:4030031 name: interstitial cell def: "Any cell that is located within the interstitium between the cells most prominent in defining a given tissue. \"Interstitial cell\" is a morphological term and refers to a variety of cells with differing origins and phenotypes." [PMID:24987007] -is_a: CL:0000000 ! cell +is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000000 ! cell intersection_of: part_of UBERON:0005169 ! interstitial tissue relationship: part_of UBERON:0005169 ! interstitial tissue @@ -33893,14 +34160,45 @@ def: "A supporting cell that is part of the ovary and differentiates into a gran synonym: "ovarian pregranulosa cell" EXACT [PMID:32759216] synonym: "PG cell" RELATED OMO:0003000 [PMID:32759216] synonym: "pregranulosa cell" EXACT [PMID:17639032, PMID:32759216] +is_a: CL:0000255 ! eukaryotic cell is_a: CL:0000630 ! supporting cell relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 -relationship: develops_into CL:0000501 ! granulosa cell -relationship: directly_develops_into CL:0000501 ! granulosa cell +relationship: develops_into CL:4033083 ! squamous granulosa cell relationship: part_of UBERON:0000992 ! ovary +relationship: RO:0002210 CL:4033083 ! directly develops into squamous granulosa cell property_value: dcterms-date "2024-06-07T12:04:57Z" xsd:dateTime +[Term] +id: CL:4033083 +name: squamous granulosa cell +def: "A granulosa cell that has a squamous morphology and form a single layer around the oocyte in primordial follicles. This cell develops directly into a cuboidal granulosa cell during the primordial-to-primary follicle transition." [PMID:28892263] +comment: Often in literature squamous granulosa cell and pre-granulosa cell are used as synonyms. However, this term only makes reference to the quiescent granulosa cells that surround the primordial ovarian follicle, while a pre-granulosa cell proliferates to form the primordial follicle (and thus cells become the squamous granulosa cells). {xref="https://orcid.org/0000-0001-6677-8489"} +synonym: "flattened granulosa cell" EXACT [PMID:22402964] +synonym: "pre-granulosa cell" RELATED [PMID:33914868] +synonym: "squamous GC" RELATED OMO:0003000 [PMID:33914868] +is_a: CL:0000501 ! granulosa cell +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: develops_into CL:4033084 ! cuboidal granulosa cell +relationship: directly_develops_from CL:4033066 ! pre-granulosa cell +relationship: part_of UBERON:0003981 ! primordial ovarian follicle +relationship: RO:0002210 CL:4033084 ! directly develops into cuboidal granulosa cell +property_value: dcterms-date "2024-09-24T13:13:24Z" xsd:dateTime + +[Term] +id: CL:4033084 +name: cuboidal granulosa cell +def: "A granulosa cell that has a cuboidal morphology and develops from squamous granulosa cell during the transition between primordial follicle to primary follicle. Cuboidal granulosa cells proliferate to form a second layer within secondary follicles." [PMID:28892263] +synonym: "columnar GC" RELATED OMO:0003000 [PMID:19001500] +synonym: "columnar granulosa cell" EXACT [PMID:19001500] +synonym: "cuboidal epithelial granulosa cell" EXACT [PMID:31849844] +synonym: "cuboidal GC" RELATED OMO:0003000 [PMID:33914868] +is_a: CL:0000501 ! granulosa cell +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: develops_from CL:4033083 ! squamous granulosa cell +relationship: directly_develops_from CL:4033083 ! squamous granulosa cell +property_value: dcterms-date "2024-09-24T13:14:57Z" xsd:dateTime + [Term] id: CL:4040002 name: enteroglial cell @@ -33912,8 +34210,8 @@ is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: CL:0000125 ! glial cell intersection_of: part_of UBERON:0002005 ! enteric nervous system relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 -relationship: expresses PR:000007939 ! glial fibrillary acidic protein relationship: part_of UBERON:0002005 ! enteric nervous system +relationship: RO:0002292 PR:000007939 ! expresses glial fibrillary acidic protein property_value: dcterms-date "2023-04-03T15:15:40Z" xsd:dateTime [Term] @@ -33955,6 +34253,55 @@ is_a: CL:0000878 ! central nervous system macrophage relationship: dc-contributor https://orcid.org/0000-0002-0098-8958 property_value: dcterms-date "2024-03-26T16:39:56Z" xsd:dateTime +[Term] +id: CL:4052002 +name: syncytial cell +def: "A multinucleate cell formed by the fusion of multiple uninuclear cells through plasma membrane fusion. This process leads to a single large cell containing multiple nuclei within a shared cytoplasm." [PMID:20851884, Wikipedia:Syncytium] +synonym: "SC" RELATED OMO:0003000 [PMID:9067520] +synonym: "syncytium" EXACT [WBbt:0008074] +is_a: CL:0000228 ! multinucleate cell +intersection_of: CL:0000000 ! cell +intersection_of: output_of GO:0000768 ! syncytium formation by plasma membrane fusion +intersection_of: RO:0000053 PATO:0001908 ! has characteristic multinucleate +relationship: dc-contributor https://orcid.org/0009-0000-8480-9277 +relationship: output_of GO:0000768 ! syncytium formation by plasma membrane fusion +relationship: RO:0000053 PATO:0001908 ! has characteristic multinucleate +property_value: dcterms-date "2024-08-15T10:38:46Z" xsd:dateTime + +[Term] +id: CL:4052003 +name: intestinal villus capillary endothelial cell +def: "A capillary endothelial cell that is part of the intestinal villus. This cell is highly fenestrated, with fenestrations most numerous at the villus tips, and plays a vital role in nutrient absorption and maintaining the selective permeability of the intestinal barrier." [PMID:18480313, PMID:35810168, PMID:38051275] +synonym: "villus blood capillary endothelial cells" BROAD [PMID:35810168] +synonym: "villus tip endothelial cell" RELATED [PMID:38051275] +is_a: CL:0000666 ! fenestrated endothelial cell +is_a: CL:0002144 ! capillary endothelial cell +intersection_of: CL:0002144 ! capillary endothelial cell +intersection_of: part_of UBERON:0001213 ! intestinal villus +relationship: dc-contributor https://orcid.org/0009-0000-8480-9277 +relationship: part_of UBERON:0001213 ! intestinal villus +property_value: dcterms-date "2024-09-17T10:03:25Z" xsd:dateTime + +[Term] +id: CL:4052049 +name: striated cell of salivary gland +def: "An columnar/cuboidal epithelial cell that is part of the striated duct of salivary gland, characterized by basal striations formed by infoldings of the plasma membrane. This cell play a crucial role in modifying the electrolyte composition and concentration of saliva through active ion transport, particularly the absorption of sodium and secretion of potassium." [PMID:30855909, PMID:34147989, PMID:36726292] +synonym: "SD cells" BROAD [PMID:11590591] +synonym: "striated duct cells" BROAD [PMID:11590591] +is_a: CL:0000068 ! duct epithelial cell +is_a: CL:0000075 ! columnar/cuboidal epithelial cell +is_a: CL:1001596 ! salivary gland glandular cell +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: CL:0000075 ! columnar/cuboidal epithelial cell +intersection_of: part_of UBERON:0014729 ! striated duct of salivary gland +relationship: capable_of GO:0036376 ! sodium ion export across plasma membrane +relationship: capable_of GO:1990573 ! potassium ion import across plasma membrane +relationship: dc-contributor https://orcid.org/0000-0003-4389-9821 +relationship: dc-contributor https://orcid.org/0009-0000-8480-9277 +relationship: part_of UBERON:0014729 ! striated duct of salivary gland +relationship: part_of UBERON:0015766 ! epithelium of duct of salivary gland +property_value: dcterms-date "2024-09-11T10:00:25Z" xsd:dateTime + [Term] id: GO:0000011 name: vacuole inheritance @@ -33974,8 +34321,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of DNA recombination, a DNA metabolic process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents." [GOC:go_curators, ISBN:0198506732] is_a: GO:0051052 ! regulation of DNA metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006310 ! DNA recombination -relationship: regulates GO:0006310 ! DNA recombination +intersection_of: RO:0002211 GO:0006310 ! regulates (processual) DNA recombination +relationship: RO:0002211 GO:0006310 ! regulates (processual) DNA recombination [Term] id: GO:0000035 @@ -33985,8 +34332,8 @@ def: "Binding to an acyl group, any group formally derived by removal of the hyd synonym: "acyl-CoA or acyl binding" BROAD [] is_a: GO:0036094 ! small molecule binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:22221 ! acyl group -relationship: has_primary_input CHEBI:22221 ! acyl group +intersection_of: RO:0004009 CHEBI:22221 ! has primary input acyl group +relationship: RO:0004009 CHEBI:22221 ! has primary input acyl group property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/21211" xsd:anyURI [Term] @@ -33997,8 +34344,8 @@ def: "The directed movement of transition metal ions into, out of or within a ce synonym: "transition metal transport" EXACT [] is_a: GO:0030001 ! metal ion transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:33515 ! transition element cation -relationship: has_primary_input CHEBI:33515 ! transition element cation +intersection_of: RO:0004009 CHEBI:33515 ! has primary input transition element cation +relationship: RO:0004009 CHEBI:33515 ! has primary input transition element cation [Term] id: GO:0000070 @@ -34015,32 +34362,6 @@ intersection_of: GO:0098813 ! nuclear chromosome segregation intersection_of: part_of GO:0140014 ! mitotic nuclear division relationship: part_of GO:0140014 ! mitotic nuclear division -[Term] -id: GO:0000122 -name: negative regulation of transcription by RNA polymerase II -namespace: biological_process -alt_id: GO:0010553 -alt_id: GO:0045816 -def: "Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II." [GOC:go_curators, GOC:txnOH] -synonym: "down regulation of global transcription from RNA polymerase II promoter" RELATED [] -synonym: "down regulation of transcription from RNA polymerase II promoter" EXACT [] -synonym: "down-regulation of global transcription from RNA polymerase II promoter" RELATED [] -synonym: "down-regulation of transcription from RNA polymerase II promoter" EXACT [] -synonym: "downregulation of global transcription from RNA polymerase II promoter" RELATED [] -synonym: "downregulation of transcription from RNA polymerase II promoter" EXACT [] -synonym: "inhibition of global transcription from RNA polymerase II promoter" RELATED [] -synonym: "inhibition of transcription from RNA polymerase II promoter" EXACT [] -synonym: "negative regulation of gene-specific transcription from RNA polymerase II promoter" RELATED [] -synonym: "negative regulation of global transcription from Pol II promoter" RELATED [] -synonym: "negative regulation of transcription from Pol II promoter" EXACT [] -synonym: "negative regulation of transcription from RNA polymerase II promoter" EXACT [] -synonym: "negative regulation of transcription from RNA polymerase II promoter, global" RELATED [] -is_a: GO:0006357 ! regulation of transcription by RNA polymerase II -is_a: GO:0045892 ! negative regulation of DNA-templated transcription -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006366 ! transcription by RNA polymerase II -relationship: negatively_regulates GO:0006366 ! transcription by RNA polymerase II - [Term] id: GO:0000139 name: Golgi membrane @@ -34065,8 +34386,8 @@ subset: goslim_plant is_a: GO:1901265 ! nucleoside phosphate binding is_a: GO:1901363 ! heterocyclic compound binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:36976 ! nucleotide -relationship: has_primary_input CHEBI:36976 ! nucleotide +intersection_of: RO:0004009 CHEBI:36976 ! has primary input nucleotide +relationship: RO:0004009 CHEBI:36976 ! has primary input nucleotide [Term] id: GO:0000226 @@ -34079,8 +34400,8 @@ synonym: "microtubule cytoskeleton organization and biogenesis" RELATED [GOC:mah is_a: GO:0007010 ! cytoskeleton organization is_a: GO:0007017 ! microtubule-based process intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0015630 ! microtubule cytoskeleton -relationship: results_in_organization_of GO:0015630 ! microtubule cytoskeleton +intersection_of: RO:0002592 GO:0015630 ! results in organization of microtubule cytoskeleton +relationship: RO:0002592 GO:0015630 ! results in organization of microtubule cytoskeleton property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23114" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23195" xsd:anyURI @@ -34113,8 +34434,8 @@ is_a: GO:0005976 ! polysaccharide metabolic process is_a: GO:0009059 ! macromolecule biosynthetic process is_a: GO:0016051 ! carbohydrate biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:18154 ! polysaccharide -relationship: has_primary_output CHEBI:18154 ! polysaccharide +intersection_of: RO:0004008 CHEBI:18154 ! has primary output polysaccharide +relationship: RO:0004008 CHEBI:18154 ! has primary output polysaccharide [Term] id: GO:0000272 @@ -34130,8 +34451,8 @@ is_a: GO:0005976 ! polysaccharide metabolic process is_a: GO:0009057 ! macromolecule catabolic process is_a: GO:0016052 ! carbohydrate catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:18154 ! polysaccharide -relationship: has_primary_input CHEBI:18154 ! polysaccharide +intersection_of: RO:0004009 CHEBI:18154 ! has primary input polysaccharide +relationship: RO:0004009 CHEBI:18154 ! has primary input polysaccharide [Term] id: GO:0000278 @@ -34151,7 +34472,7 @@ intersection_of: GO:0007049 ! cell cycle intersection_of: has_part GO:0140014 ! mitotic nuclear division relationship: has_part GO:0140014 ! mitotic nuclear division relationship: in_taxon NCBITaxon:2759 {all_only="true"} ! Eukaryota -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota [Term] id: GO:0000280 @@ -34173,9 +34494,9 @@ def: "Enables the transfer of adenine nucleotides (AMP, ADP, and ATP) from one s xref: Reactome:R-HSA-389652 "PMP34-mediated exchange of cytosolic ATP for peroxisomal AMP" is_a: GO:0015216 ! purine nucleotide transmembrane transporter activity intersection_of: GO:0015215 ! nucleotide transmembrane transporter activity -intersection_of: has_primary_input CHEBI:61293 ! adenyl nucleotide -relationship: has_primary_input CHEBI:61293 ! adenyl nucleotide +intersection_of: RO:0004009 CHEBI:61293 ! has primary input adenyl nucleotide relationship: part_of GO:0051503 ! adenine nucleotide transport +relationship: RO:0004009 CHEBI:61293 ! has primary input adenyl nucleotide [Term] id: GO:0000313 @@ -34211,8 +34532,8 @@ def: "The joining of 2 or more lipid bilayer membranes that surround the nucleus is_a: GO:0071763 ! nuclear membrane organization is_a: GO:0090174 ! organelle membrane fusion intersection_of: GO:0061025 ! membrane fusion -intersection_of: results_in_fusion_of GO:0031965 ! nuclear membrane -relationship: results_in_fusion_of GO:0031965 ! nuclear membrane +intersection_of: RO:0012008 GO:0031965 ! results in fusion of nuclear membrane +relationship: RO:0012008 GO:0031965 ! results in fusion of nuclear membrane [Term] id: GO:0000741 @@ -34226,9 +34547,9 @@ xref: Wikipedia:Karyogamy is_a: GO:0006997 ! nucleus organization is_a: GO:0048284 ! organelle fusion intersection_of: GO:0048284 ! organelle fusion -intersection_of: results_in_fusion_of GO:0005634 ! nucleus +intersection_of: RO:0012008 GO:0005634 ! results in fusion of nucleus relationship: part_of GO:0006997 ! nucleus organization -relationship: results_in_fusion_of GO:0005634 ! nucleus +relationship: RO:0012008 GO:0005634 ! results in fusion of nucleus [Term] id: GO:0000768 @@ -34255,8 +34576,9 @@ synonym: "chromosome scaffold" RELATED [] synonym: "cytoplasmic chromatin" NARROW [] synonym: "nuclear chromatin" NARROW [] xref: NIF_Subcellular:sao1615953555 -is_a: GO:0032993 ! protein-DNA complex +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of GO:0005694 ! chromosome +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28301" xsd:anyURI [Term] id: GO:0000791 @@ -34301,10 +34623,11 @@ name: regulation of glutamine family amino acid metabolic process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amino acids of the glutamine family, comprising arginine, glutamate, glutamine and proline." [GOC:go_curators] synonym: "regulation of glutamine family amino acid metabolism" EXACT [] -is_a: GO:0006521 ! regulation of cellular amino acid metabolic process +is_a: GO:0006521 ! regulation of amino acid metabolic process +is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009064 ! glutamine family amino acid metabolic process -relationship: regulates GO:0009064 ! glutamine family amino acid metabolic process +intersection_of: RO:0002211 GO:0009064 ! regulates (processual) glutamine family amino acid metabolic process +relationship: RO:0002211 GO:0009064 ! regulates (processual) glutamine family amino acid metabolic process [Term] id: GO:0000902 @@ -34320,104 +34643,8 @@ subset: goslim_yeast synonym: "cellular morphogenesis" EXACT [] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of CL:0000000 ! cell -relationship: results_in_morphogenesis_of CL:0000000 ! cell - -[Term] -id: GO:0000976 -name: transcription cis-regulatory region binding -namespace: molecular_function -alt_id: GO:0000975 -alt_id: GO:0000984 -alt_id: GO:0001017 -alt_id: GO:0044212 -def: "Binding to a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon." [GOC:txnOH] -comment: Note that this term is meant to also capture non-specific binding to regulatory regions. Also, to minimize ambiguity in the use of the word "promoter" in GO, we have chosen the phrase "transcription regulatory region" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the "core promoter" where the basal transcription machinery binds, the "core promoter proximal region" where regulatory factors other than the basal machinery bind. There are also additional regulatory regions, in both the DNA and the RNA transcript, which regulate elongation or termination of transcription. -synonym: "bacterial-type RNA polymerase regulatory region DNA binding" NARROW [] -synonym: "bacterial-type RNA polymerase transcription regulatory region sequence-specific DNA binding" NARROW [] -synonym: "eubacterial-type RNA polymerase regulatory region DNA binding" NARROW [] -synonym: "eubacterial-type RNA polymerase regulatory region sequence-specific DNA binding" NARROW [] -synonym: "regulatory region DNA binding" BROAD [] -synonym: "transcription regulatory region DNA binding" RELATED [] -synonym: "transcription regulatory region sequence-specific DNA binding" EXACT [] -is_a: GO:0001067 ! transcription regulatory region nucleic acid binding -is_a: GO:1990837 ! sequence-specific double-stranded DNA binding -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19312" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20791" xsd:anyURI -created_by: krc -creation_date: 2010-08-10T02:58:18Z - -[Term] -id: GO:0000977 -name: RNA polymerase II transcription regulatory region sequence-specific DNA binding -namespace: molecular_function -alt_id: GO:0001012 -def: "Binding to a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II." [GOC:txnOH] -comment: To minimize ambiguity in the use of the word "promoter" in GO, we have chosen the phrase "transcription regulatory region" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the "core promoter" where the basal transcription machinery binds, the "core promoter proximal region" where regulatory factors other than the basal machinery bind. There are also additional regulatory regions, in both the DNA and the RNA transcript, which regulate elongation or termination of transcription. -synonym: "RNA polymerase II regulatory region DNA binding" RELATED [] -is_a: GO:0000976 ! transcription cis-regulatory region binding -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19312" xsd:anyURI -created_by: krc -creation_date: 2010-08-10T11:05:36Z - -[Term] -id: GO:0000981 -name: DNA-binding transcription factor activity, RNA polymerase II-specific -namespace: molecular_function -alt_id: GO:0000982 -alt_id: GO:0001133 -alt_id: GO:0001200 -alt_id: GO:0001201 -alt_id: GO:0001202 -alt_id: GO:0001203 -alt_id: GO:0003705 -def: "A DNA-binding transcription factor activity that modulates the transcription of specific gene sets transcribed by RNA polymerase II." [GOC:txnOH-2018] -comment: For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity. -synonym: "copper ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity" NARROW [] -synonym: "metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity" NARROW [] -synonym: "metal ion regulated sequence-specific DNA binding RNA polymerase II transcription factor activity" NARROW [] -synonym: "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity" NARROW [] -synonym: "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" NARROW [] -synonym: "RNA polymerase II transcription factor activity, copper ion regulated core promoter proximal region sequence-specific binding" NARROW [] -synonym: "RNA polymerase II transcription factor activity, copper ion regulated proximal promoter sequence-specific DNA binding" NARROW [] -synonym: "RNA polymerase II transcription factor activity, metal ion regulated core promoter proximal region sequence-specific binding" NARROW [] -synonym: "RNA polymerase II transcription factor activity, metal ion regulated proximal promoter sequence-specific DNA binding" NARROW [] -synonym: "RNA polymerase II transcription factor activity, metal ion regulated sequence-specific DNA binding" NARROW [] -synonym: "RNA polymerase II transcription factor activity, sequence-specific DNA binding" EXACT [] -synonym: "RNA polymerase II transcription factor activity, sequence-specific transcription regulatory region DNA binding" EXACT [] -synonym: "RNA polymerase II transcription factor activity, zinc ion regulated core promoter proximal region sequence-specific DNA binding" NARROW [] -synonym: "RNA polymerase II transcription factor activity, zinc ion regulated proximal promoter sequence-specific DNA binding" NARROW [] -synonym: "sequence-specific distal enhancer binding RNA polymerase II transcription factor activity" NARROW [] -synonym: "sequence-specific DNA binding RNA polymerase II transcription factor activity" EXACT [] -synonym: "sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity" RELATED [] -synonym: "transcription factor" BROAD [GOC:vw] -synonym: "transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding" NARROW [] -synonym: "transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding" NARROW [] -synonym: "transcription factor activity, RNA polymerase II proximal promoter sequence-specific DNA binding" NARROW [] -synonym: "zinc ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity" NARROW [] -is_a: GO:0003700 ! DNA-binding transcription factor activity -intersection_of: GO:0140110 ! transcription regulator activity -intersection_of: has_part GO:0000977 ! RNA polymerase II transcription regulatory region sequence-specific DNA binding -intersection_of: part_of GO:0006357 ! regulation of transcription by RNA polymerase II -relationship: has_part GO:0000977 ! RNA polymerase II transcription regulatory region sequence-specific DNA binding -relationship: occurs_in GO:0000785 ! chromatin -relationship: part_of GO:0006357 ! regulation of transcription by RNA polymerase II -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/15530" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16131" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16152" xsd:anyURI -created_by: krc -creation_date: 2010-08-10T02:37:21Z - -[Term] -id: GO:0001067 -name: transcription regulatory region nucleic acid binding -namespace: molecular_function -def: "Binding to a nucleic acid region that regulates a nucleic acid-based process. Such processes include transcription, DNA replication, and DNA repair." [GOC:txnOH] -synonym: "regulatory region nucleic acid binding" RELATED [] -is_a: GO:0003676 ! nucleic acid binding -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20791" xsd:anyURI -created_by: krc -creation_date: 2010-10-21T04:08:56Z +intersection_of: RO:0002298 CL:0000000 ! results in morphogenesis of cell +relationship: RO:0002298 CL:0000000 ! results in morphogenesis of cell [Term] id: GO:0001101 @@ -34431,167 +34658,6 @@ synonym: "response to acid anion" RELATED [] synonym: "response to oxoanion" RELATED [] is_a: GO:0042221 ! response to chemical -[Term] -id: GO:0001172 -name: RNA-templated transcription -namespace: biological_process -def: "The synthesis of an RNA transcript from an RNA template." [GOC:txnOH] -synonym: "transcription, RNA-dependent" EXACT [GOC:txnOH] -synonym: "transcription, RNA-templated" EXACT [] -is_a: GO:0009059 ! macromolecule biosynthetic process -intersection_of: GO:0009059 ! macromolecule biosynthetic process -intersection_of: has_primary_output SO:0000673 -intersection_of: process_has_causal_agent CHEBI:33697 ! ribonucleic acid -relationship: has_primary_output SO:0000673 -relationship: part_of GO:0010467 ! gene expression -relationship: process_has_causal_agent CHEBI:33697 ! ribonucleic acid -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22555" xsd:anyURI -created_by: krc -creation_date: 2011-03-14T03:54:46Z - -[Term] -id: GO:0001216 -name: DNA-binding transcription activator activity -namespace: molecular_function -alt_id: GO:0001140 -alt_id: GO:0001215 -def: "A DNA-binding transcription factor activity that activates or increases transcription of specific gene sets." [GOC:txnOH-2018] -comment: For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity. -synonym: "bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" RELATED [] -synonym: "bacterial-type RNA polymerase transcriptional activator activity, metal ion regulated sequence-specific DNA binding" NARROW [] -synonym: "bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding" NARROW [] -synonym: "metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in positive regulation of transcription" NARROW [] -synonym: "sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in positive regulation of transcription" NARROW [] -synonym: "transcriptional activator activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding" NARROW [] -synonym: "transcriptional activator activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding" RELATED [] -is_a: GO:0003700 ! DNA-binding transcription factor activity -intersection_of: GO:0140110 ! transcription regulator activity -intersection_of: has_part GO:0000976 ! transcription cis-regulatory region binding -intersection_of: part_of GO:0045893 ! positive regulation of DNA-templated transcription -relationship: has_part GO:0000976 ! transcription cis-regulatory region binding -relationship: part_of GO:0045893 ! positive regulation of DNA-templated transcription -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16534" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16736" xsd:anyURI -created_by: krc -creation_date: 2011-01-26T03:09:27Z - -[Term] -id: GO:0001217 -name: DNA-binding transcription repressor activity -namespace: molecular_function -alt_id: GO:0001141 -alt_id: GO:0001218 -alt_id: GO:0001219 -alt_id: GO:0001220 -def: "A DNA-binding transcription factor activity that represses or decreases the transcription of specific gene sets." [GOC:txnOH-2018] -comment: For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity. -synonym: "bacterial-type DNA binding transcription repressor activity" NARROW [] -synonym: "bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" NARROW [] -synonym: "bacterial-type RNA polymerase transcriptional repressor activity, cadmium ion regulated sequence-specific DNA binding" NARROW [] -synonym: "bacterial-type RNA polymerase transcriptional repressor activity, copper ion regulated sequence-specific DNA binding" NARROW [] -synonym: "bacterial-type RNA polymerase transcriptional repressor activity, metal ion regulated sequence-specific DNA binding" NARROW [] -synonym: "bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding" NARROW [] -synonym: "cadmium ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription" NARROW [] -synonym: "copper ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription" NARROW [] -synonym: "metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription" NARROW [] -synonym: "sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription" NARROW [] -synonym: "transcriptional repressor activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding" NARROW [] -synonym: "transcriptional repressor activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding" NARROW [] -is_a: GO:0003700 ! DNA-binding transcription factor activity -intersection_of: GO:0140110 ! transcription regulator activity -intersection_of: has_part GO:0000976 ! transcription cis-regulatory region binding -intersection_of: part_of GO:0045892 ! negative regulation of DNA-templated transcription -relationship: has_part GO:0000976 ! transcription cis-regulatory region binding -relationship: part_of GO:0045892 ! negative regulation of DNA-templated transcription -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16736" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20253" xsd:anyURI -created_by: krc -creation_date: 2011-01-26T03:15:45Z - -[Term] -id: GO:0001227 -name: DNA-binding transcription repressor activity, RNA polymerase II-specific -namespace: molecular_function -alt_id: GO:0001078 -alt_id: GO:0001206 -alt_id: GO:0001210 -alt_id: GO:0001214 -def: "A DNA-binding transcription factor activity that represses or decreases the transcription of specific gene sets transcribed by RNA polymerase II." [GOC:txnOH-2018] -comment: For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity. -synonym: "distal enhancer DNA-binding transcription repressor activity, RNA polymerase II-specific" NARROW [] -synonym: "metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in negative regulation of transcription" NARROW [] -synonym: "metal ion regulated sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" NARROW [] -synonym: "proximal promoter DNA-binding transcription repressor activity, RNA polymerase II-specific" NARROW [] -synonym: "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" NARROW [] -synonym: "RNA polymerase II distal enhancer sequence-specific DNA-binding transcription factor activity involved in negative regulation of transcription" NARROW [] -synonym: "RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" EXACT [] -synonym: "RNA polymerase II transcriptional repressor activity, metal ion regulated core promoter proximal region sequence-specific binding" NARROW [] -synonym: "RNA polymerase II transcriptional repressor activity, metal ion regulated proximal promoter sequence-specific DNA binding" NARROW [] -synonym: "sequence-specific distal enhancer binding RNA polymerase II transcription factor activity involved in negative regulation of transcription" NARROW [] -synonym: "transcriptional repressor activity, metal ion regulated sequence-specific DNA binding" NARROW [] -synonym: "transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding" NARROW [] -synonym: "transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding" NARROW [] -synonym: "transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding" EXACT [] -is_a: GO:0000981 ! DNA-binding transcription factor activity, RNA polymerase II-specific -is_a: GO:0001217 ! DNA-binding transcription repressor activity -intersection_of: GO:0140110 ! transcription regulator activity -intersection_of: has_part GO:0000977 ! RNA polymerase II transcription regulatory region sequence-specific DNA binding -intersection_of: part_of GO:0000122 ! negative regulation of transcription by RNA polymerase II -relationship: has_part GO:0000977 ! RNA polymerase II transcription regulatory region sequence-specific DNA binding -relationship: part_of GO:0000122 ! negative regulation of transcription by RNA polymerase II -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16131" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16152" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16534" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20253" xsd:anyURI -created_by: krc -creation_date: 2010-10-26T03:56:48Z - -[Term] -id: GO:0001228 -name: DNA-binding transcription activator activity, RNA polymerase II-specific -namespace: molecular_function -alt_id: GO:0001077 -alt_id: GO:0001205 -alt_id: GO:0001209 -alt_id: GO:0001211 -alt_id: GO:0001212 -alt_id: GO:0001213 -def: "A DNA-binding transcription factor activity that activates or increases transcription of specific gene sets transcribed by RNA polymerase II." [GOC:aruk, GOC:txnOH-2018, PMID:20737563, PMID:27145859] -comment: For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity. -synonym: "copper ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in positive regulation of transcription" NARROW [] -synonym: "distal enhancer DNA-binding transcription activator activity, RNA polymerase II-specific" NARROW [] -synonym: "metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in positive regulation of transcription" NARROW [] -synonym: "metal ion regulated sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" NARROW [] -synonym: "proximal promoter DNA-binding transcription activator activity, RNA polymerase II-specific" NARROW [] -synonym: "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" NARROW [] -synonym: "RNA polymerase II distal enhancer sequence-specific DNA-binding transcription factor activity involved in positive regulation of transcription" NARROW [] -synonym: "RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" EXACT [] -synonym: "RNA polymerase II transcriptional activator activity, copper ion regulated proximal promoter sequence-specific DNA binding" NARROW [] -synonym: "RNA polymerase II transcriptional activator activity, metal ion regulated core promoter proximal region sequence-specific binding" NARROW [] -synonym: "RNA polymerase II transcriptional activator activity, metal ion regulated proximal promoter sequence-specific DNA binding" NARROW [] -synonym: "RNA polymerase II transcriptional activator activity, zinc ion regulated core promoter proximal region sequence-specific binding" NARROW [] -synonym: "RNA polymerase II transcriptional activator activity, zinc ion regulated proximal promoter sequence-specific DNA binding" NARROW [] -synonym: "sequence-specific distal enhancer binding RNA polymerase II transcription factor activity involved in positive regulation of transcription" NARROW [] -synonym: "transcriptional activator activity, metal ion regulated sequence-specific DNA binding" NARROW [] -synonym: "transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding" NARROW [] -synonym: "transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific DNA binding" NARROW [] -synonym: "transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding" NARROW [] -synonym: "transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding" EXACT [] -synonym: "zinc ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in positive regulation of transcription" NARROW [] -is_a: GO:0000981 ! DNA-binding transcription factor activity, RNA polymerase II-specific -is_a: GO:0001216 ! DNA-binding transcription activator activity -intersection_of: GO:0140110 ! transcription regulator activity -intersection_of: has_part GO:0000977 ! RNA polymerase II transcription regulatory region sequence-specific DNA binding -intersection_of: part_of GO:0045944 ! positive regulation of transcription by RNA polymerase II -relationship: has_part GO:0000977 ! RNA polymerase II transcription regulatory region sequence-specific DNA binding -relationship: part_of GO:0045944 ! positive regulation of transcription by RNA polymerase II -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16131" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16152" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16534" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20253" xsd:anyURI -created_by: krc -creation_date: 2012-01-26T03:10:20Z - [Term] id: GO:0001501 name: skeletal system development @@ -34600,8 +34666,8 @@ def: "The process whose specific outcome is the progression of the skeleton over synonym: "skeletal development" EXACT [] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001434 ! skeletal system -relationship: results_in_development_of UBERON:0001434 ! skeletal system +intersection_of: RO:0002296 UBERON:0001434 ! results in development of skeletal system +relationship: RO:0002296 UBERON:0001434 ! results in development of skeletal system [Term] id: GO:0001503 @@ -34615,8 +34681,8 @@ synonym: "osteogenesis" EXACT [] xref: Wikipedia:Ossification is_a: GO:0032501 ! multicellular organismal process intersection_of: GO:0032501 ! multicellular organismal process -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001474 ! bone element -relationship: results_in_formation_of_anatomical_entity UBERON:0001474 ! bone element +intersection_of: RO:0002297 UBERON:0001474 ! results in formation of anatomical entity bone element +relationship: RO:0002297 UBERON:0001474 ! results in formation of anatomical entity bone element [Term] id: GO:0001504 @@ -34648,9 +34714,9 @@ synonym: "blood vessel formation from pre-existing blood vessels" EXACT systemat xref: Wikipedia:Angiogenesis is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001981 ! blood vessel +intersection_of: RO:0002297 UBERON:0001981 ! results in formation of anatomical entity blood vessel relationship: part_of GO:0048514 ! blood vessel morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001981 ! blood vessel +relationship: RO:0002297 UBERON:0001981 ! results in formation of anatomical entity blood vessel [Term] id: GO:0001539 @@ -34671,9 +34737,9 @@ def: "The process whose specific outcome is the progression of the ovarian folli synonym: "follicular phase" RELATED [] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001305 ! ovarian follicle +intersection_of: RO:0002296 UBERON:0001305 ! results in development of ovarian follicle relationship: part_of GO:0008585 ! female gonad development -relationship: results_in_development_of UBERON:0001305 ! ovarian follicle +relationship: RO:0002296 UBERON:0001305 ! results in development of ovarian follicle [Term] id: GO:0001545 @@ -34683,9 +34749,9 @@ def: "Increase in size of primary follicles including oocyte growth and granulos is_a: GO:0022602 ! ovulation cycle process is_a: GO:0048589 ! developmental growth intersection_of: GO:0040007 ! growth -intersection_of: results_in_growth_of UBERON:0000035 ! primary ovarian follicle +intersection_of: RO:0002343 UBERON:0000035 ! results in growth of primary ovarian follicle relationship: part_of GO:0001541 ! ovarian follicle development -relationship: results_in_growth_of UBERON:0000035 ! primary ovarian follicle +relationship: RO:0002343 UBERON:0000035 ! results in growth of primary ovarian follicle [Term] id: GO:0001546 @@ -34695,10 +34761,10 @@ def: "Increase in size of follicles surrounded by two or more layers of granulos is_a: GO:0022602 ! ovulation cycle process is_a: GO:0048589 ! developmental growth intersection_of: GO:0040007 ! growth -intersection_of: results_in_growth_of UBERON:0000036 ! secondary ovarian follicle +intersection_of: RO:0002343 UBERON:0000036 ! results in growth of secondary ovarian follicle relationship: part_of GO:0001541 ! ovarian follicle development relationship: part_of GO:0048162 ! multi-layer follicle stage -relationship: results_in_growth_of UBERON:0000036 ! secondary ovarian follicle +relationship: RO:0002343 UBERON:0000036 ! results in growth of secondary ovarian follicle [Term] id: GO:0001547 @@ -34709,9 +34775,9 @@ is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0022602 ! ovulation cycle process is_a: GO:0048589 ! developmental growth intersection_of: GO:0040007 ! growth -intersection_of: results_in_growth_of UBERON:0000037 ! tertiary ovarian follicle +intersection_of: RO:0002343 UBERON:0000037 ! results in growth of tertiary ovarian follicle relationship: part_of GO:0001541 ! ovarian follicle development -relationship: results_in_growth_of UBERON:0000037 ! tertiary ovarian follicle +relationship: RO:0002343 UBERON:0000037 ! results in growth of tertiary ovarian follicle [Term] id: GO:0001550 @@ -34722,10 +34788,10 @@ synonym: "ovarian cumulus growth" RELATED [] is_a: GO:0022602 ! ovulation cycle process is_a: GO:0048589 ! developmental growth intersection_of: GO:0040007 ! growth -intersection_of: results_in_growth_of UBERON:0001306 ! cumulus oophorus +intersection_of: RO:0002343 UBERON:0001306 ! results in growth of cumulus oophorus relationship: part_of GO:0001547 ! antral ovarian follicle growth relationship: part_of GO:0048165 ! fused antrum stage -relationship: results_in_growth_of UBERON:0001306 ! cumulus oophorus +relationship: RO:0002343 UBERON:0001306 ! results in growth of cumulus oophorus [Term] id: GO:0001553 @@ -34746,11 +34812,11 @@ def: "The developmental growth process in which an oocyte irreversibly increases is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0048588 ! developmental cell growth intersection_of: GO:0040007 ! growth -intersection_of: results_in_growth_of CL:0000023 ! oocyte +intersection_of: RO:0002343 CL:0000023 ! results in growth of oocyte relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa relationship: part_of GO:0048599 ! oocyte development -relationship: results_in_growth_of CL:0000023 ! oocyte +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0002343 CL:0000023 ! results in growth of oocyte [Term] id: GO:0001556 @@ -34761,11 +34827,11 @@ xref: Wikipedia:Oocyte_maturation is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0048469 ! cell maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of CL:0000023 ! oocyte +intersection_of: RO:0002299 CL:0000023 ! results in maturation of oocyte relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa relationship: part_of GO:0048599 ! oocyte development -relationship: results_in_maturation_of CL:0000023 ! oocyte +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0002299 CL:0000023 ! results in maturation of oocyte [Term] id: GO:0001558 @@ -34775,8 +34841,8 @@ def: "Any process that modulates the frequency, rate, extent or direction of cel is_a: GO:0040008 ! regulation of growth is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0016049 ! cell growth -relationship: regulates GO:0016049 ! cell growth +intersection_of: RO:0002211 GO:0016049 ! regulates (processual) cell growth +relationship: RO:0002211 GO:0016049 ! regulates (processual) cell growth [Term] id: GO:0001560 @@ -34804,9 +34870,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood." [GOC:hjd, UBERON:0001981] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001981 ! blood vessel +intersection_of: RO:0002296 UBERON:0001981 ! results in development of blood vessel relationship: part_of GO:0001944 ! vasculature development -relationship: results_in_development_of UBERON:0001981 ! blood vessel +relationship: RO:0002296 UBERON:0001981 ! results in development of blood vessel [Term] id: GO:0001569 @@ -34829,9 +34895,9 @@ synonym: "vascular morphogenesis" EXACT [] xref: Wikipedia:Vasculogenesis is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001981 ! blood vessel +intersection_of: RO:0002297 UBERON:0001981 ! results in formation of anatomical entity blood vessel relationship: part_of GO:0048514 ! blood vessel morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001981 ! blood vessel +relationship: RO:0002297 UBERON:0001981 ! results in formation of anatomical entity blood vessel [Term] id: GO:0001578 @@ -34840,8 +34906,8 @@ namespace: biological_process def: "A process that results in a parallel arrangement of microtubules." [GOC:dph] synonym: "microtubule bundling" EXACT [] is_a: GO:0000226 ! microtubule cytoskeleton organization -relationship: has_participant GO:0005874 ! microtubule -relationship: results_in_formation_of_anatomical_entity GO:0097427 ! microtubule bundle +relationship: RO:0000057 GO:0005874 ! has participant microtubule +relationship: RO:0002297 GO:0097427 ! results in formation of anatomical entity microtubule bundle [Term] id: GO:0001609 @@ -34877,9 +34943,9 @@ synonym: "G-protein-coupled A3 adenosine receptor activity" NARROW [] synonym: "P1 receptor" EXACT [PMID:9755289] is_a: GO:0004930 ! G protein-coupled receptor activity intersection_of: GO:0004930 ! G protein-coupled receptor activity -intersection_of: has_primary_input CHEBI:16335 ! adenosine -relationship: has_primary_input CHEBI:16335 ! adenosine +intersection_of: RO:0004009 CHEBI:16335 ! has primary input adenosine relationship: part_of GO:0001973 ! G protein-coupled adenosine receptor signaling pathway +relationship: RO:0004009 CHEBI:16335 ! has primary input adenosine [Term] id: GO:0001614 @@ -34893,10 +34959,10 @@ synonym: "purinoceptor" EXACT [PMID:9755289] synonym: "purinoreceptor" EXACT [PMID:9755289] is_a: GO:0016502 ! nucleotide receptor activity intersection_of: GO:0038023 ! signaling receptor activity -intersection_of: has_primary_input CHEBI:26395 ! purine nucleotide +intersection_of: RO:0004009 CHEBI:26395 ! has primary input purine nucleotide relationship: has_part GO:0017076 ! purine nucleotide binding -relationship: has_primary_input CHEBI:26395 ! purine nucleotide relationship: part_of GO:0035590 ! purinergic nucleotide receptor signaling pathway +relationship: RO:0004009 CHEBI:26395 ! has primary input purine nucleotide created_by: bf creation_date: 2010-10-22T10:57:12Z @@ -34913,9 +34979,9 @@ synonym: "K101 receptor" NARROW [] synonym: "platelet ADP receptor activity" NARROW [GOC:mah] is_a: GO:0004930 ! G protein-coupled receptor activity intersection_of: GO:0004930 ! G protein-coupled receptor activity -intersection_of: has_primary_input CHEBI:456216 ! ADP(3-) +intersection_of: RO:0004009 CHEBI:456216 ! has primary input ADP(3-) relationship: has_part GO:0043531 ! ADP binding -relationship: has_primary_input CHEBI:456216 ! ADP(3-) +relationship: RO:0004009 CHEBI:456216 ! has primary input ADP(3-) [Term] id: GO:0001649 @@ -34925,9 +34991,9 @@ def: "The process whereby a relatively unspecialized cell acquires the specializ synonym: "osteoblast cell differentiation" EXACT [] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000062 ! osteoblast +intersection_of: RO:0002315 CL:0000062 ! results in acquisition of features of osteoblast relationship: part_of GO:0001503 ! ossification -relationship: results_in_acquisition_of_features_of CL:0000062 ! osteoblast +relationship: RO:0002315 CL:0000062 ! results in acquisition of features of osteoblast [Term] id: GO:0001653 @@ -34938,9 +35004,9 @@ synonym: "endogenous peptide receptor activity" NARROW [] synonym: "exogenous peptide receptor activity" NARROW [] is_a: GO:0038023 ! signaling receptor activity intersection_of: GO:0038023 ! signaling receptor activity -intersection_of: has_primary_input CHEBI:60466 ! peptide zwitterion +intersection_of: RO:0004009 CHEBI:60466 ! has primary input peptide zwitterion relationship: has_part GO:0042277 ! peptide binding -relationship: has_primary_input CHEBI:60466 ! peptide zwitterion +relationship: RO:0004009 CHEBI:60466 ! has primary input peptide zwitterion [Term] id: GO:0001654 @@ -34951,9 +35017,9 @@ def: "The process whose specific outcome is the progression of the eye over time xref: Wikipedia:Eye_development is_a: GO:0007423 ! sensory organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000970 ! eye +intersection_of: RO:0002296 UBERON:0000970 ! results in development of eye relationship: part_of GO:0150063 ! visual system development -relationship: results_in_development_of UBERON:0000970 ! eye +relationship: RO:0002296 UBERON:0000970 ! results in development of eye [Term] id: GO:0001655 @@ -34962,9 +35028,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the urogenital system over time, from its formation to the mature structure." [GOC:go_curators] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004122 ! genitourinary system +intersection_of: RO:0002296 UBERON:0004122 ! results in development of genitourinary system relationship: has_part GO:0072001 ! renal system development -relationship: results_in_development_of UBERON:0004122 ! genitourinary system +relationship: RO:0002296 UBERON:0004122 ! results in development of genitourinary system property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22178" xsd:anyURI [Term] @@ -34974,8 +35040,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. In mammals, the metanephros is the excretory organ of the fetus, which develops into the mature kidney and is formed from the rear portion of the nephrogenic cord. The metanephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine." [GOC:bf, ISBN:0192800752] is_a: GO:0001822 ! kidney development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000081 ! metanephros -relationship: results_in_development_of UBERON:0000081 ! metanephros +intersection_of: RO:0002296 UBERON:0000081 ! results in development of metanephros +relationship: RO:0002296 UBERON:0000081 ! results in development of metanephros [Term] id: GO:0001657 @@ -34984,9 +35050,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure." [GOC:go_curators] is_a: GO:0072164 ! mesonephric tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000084 ! ureteric bud +intersection_of: RO:0002296 UBERON:0000084 ! results in development of ureteric bud relationship: part_of GO:0072001 ! renal system development -relationship: results_in_development_of UBERON:0000084 ! ureteric bud +relationship: RO:0002296 UBERON:0000084 ! results in development of ureteric bud [Term] id: GO:0001658 @@ -35066,8 +35132,8 @@ is_a: GO:0043073 ! germ cell nucleus intersection_of: GO:0005634 ! nucleus intersection_of: part_of CL:0000015 ! male germ cell relationship: in_taxon NCBITaxon:2759 {all_only="true"} ! Eukaryota -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota relationship: part_of CL:0000015 ! male germ cell +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota [Term] id: GO:0001674 @@ -35080,8 +35146,8 @@ is_a: GO:0043073 ! germ cell nucleus intersection_of: GO:0005634 ! nucleus intersection_of: part_of CL:0000021 ! female germ cell relationship: in_taxon NCBITaxon:2759 {all_only="true"} ! Eukaryota -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota relationship: part_of CL:0000021 ! female germ cell +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota [Term] id: GO:0001675 @@ -35095,9 +35161,9 @@ is_a: GO:0022412 ! cellular process involved in reproduction in multicellular or is_a: GO:0033363 ! secretory granule organization is_a: GO:0070925 ! organelle assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0001669 ! acrosomal vesicle +intersection_of: RO:0002588 GO:0001669 ! results in assembly of acrosomal vesicle relationship: part_of GO:0007286 ! spermatid development -relationship: results_in_assembly_of GO:0001669 ! acrosomal vesicle +relationship: RO:0002588 GO:0001669 ! results in assembly of acrosomal vesicle [Term] id: GO:0001677 @@ -35107,9 +35173,9 @@ def: "Formation of a complex between aminoacylated initiator methionine tRNA, GT synonym: "translation initiation ternary complex assembly" EXACT [] is_a: GO:0022618 ! protein-RNA complex assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0044207 ! translation initiation ternary complex +intersection_of: RO:0002588 GO:0044207 ! results in assembly of translation initiation ternary complex relationship: part_of GO:0006413 ! translational initiation -relationship: results_in_assembly_of GO:0044207 ! translation initiation ternary complex +relationship: RO:0002588 GO:0044207 ! results in assembly of translation initiation ternary complex [Term] id: GO:0001678 @@ -35121,8 +35187,8 @@ synonym: "cellular glucose homeostasis" EXACT [] is_a: GO:0042593 ! glucose homeostasis is_a: GO:0055082 ! intracellular chemical homeostasis intersection_of: GO:0019725 ! cellular homeostasis -intersection_of: regulates_levels_of CHEBI:4167 ! D-glucopyranose -relationship: regulates_levels_of CHEBI:4167 ! D-glucopyranose +intersection_of: RO:0002332 CHEBI:4167 ! regulates levels of D-glucopyranose +relationship: RO:0002332 CHEBI:4167 ! regulates levels of D-glucopyranose [Term] id: GO:0001692 @@ -35134,8 +35200,8 @@ is_a: GO:0006576 ! biogenic amine metabolic process is_a: GO:0052803 ! imidazole-containing compound metabolic process is_a: GO:0097164 ! ammonium ion metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:58432 ! histaminium -relationship: has_primary_input_or_output CHEBI:58432 ! histaminium +intersection_of: RO:0004007 CHEBI:58432 ! has primary input or output histaminium +relationship: RO:0004007 CHEBI:58432 ! has primary input or output histaminium [Term] id: GO:0001694 @@ -35150,8 +35216,8 @@ synonym: "histamine synthesis" EXACT [] is_a: GO:0001692 ! histamine metabolic process is_a: GO:0042401 ! biogenic amine biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:58432 ! histaminium -relationship: has_primary_output CHEBI:58432 ! histaminium +intersection_of: RO:0004008 CHEBI:58432 ! has primary output histaminium +relationship: RO:0004008 CHEBI:58432 ! has primary output histaminium [Term] id: GO:0001695 @@ -35162,10 +35228,10 @@ synonym: "histamine breakdown" EXACT [] synonym: "histamine catabolism" EXACT [] synonym: "histamine degradation" EXACT [] is_a: GO:0001692 ! histamine metabolic process -is_a: GO:0042402 ! cellular biogenic amine catabolic process +is_a: GO:0042402 ! biogenic amine catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:58432 ! histaminium -relationship: has_primary_input CHEBI:58432 ! histaminium +intersection_of: RO:0004009 CHEBI:58432 ! has primary input histaminium +relationship: RO:0004009 CHEBI:58432 ! has primary input histaminium [Term] id: GO:0001696 @@ -35183,7 +35249,7 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the embryo over time, from zygote formation through syncytial blastoderm to the hatching of the first instar larva. An example of this process is found in Drosophila melanogaster." [GOC:go_curators, GOC:mtg_sensu] is_a: GO:0009792 ! embryo development ending in birth or egg hatching relationship: in_taxon NCBITaxon:50557 {all_only="true"} ! Insecta -relationship: only_in_taxon NCBITaxon:50557 ! Insecta +relationship: RO:0002160 NCBITaxon:50557 ! only in taxon Insecta [Term] id: GO:0001701 @@ -35192,7 +35258,7 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth. An example of this process is found in Mus musculus." [GOC:go_curators, GOC:mtg_sensu] is_a: GO:0043009 ! chordate embryonic development relationship: in_taxon NCBITaxon:32525 {all_only="true"} ! Theria -relationship: only_in_taxon NCBITaxon:32525 ! Theria +relationship: RO:0002160 NCBITaxon:32525 ! only in taxon Theria [Term] id: GO:0001702 @@ -35204,7 +35270,7 @@ def: "A gastrulation process in which the initial invagination becomes the anus synonym: "deuterostomic gastrulation" EXACT [GOC:dph] is_a: GO:0007369 ! gastrulation relationship: in_taxon NCBITaxon:33511 {all_only="true"} ! Deuterostomia -relationship: only_in_taxon NCBITaxon:33511 ! Deuterostomia +relationship: RO:0002160 NCBITaxon:33511 ! only in taxon Deuterostomia [Term] id: GO:0001703 @@ -35214,7 +35280,7 @@ def: "A gastrulation process in which the initial invagination becomes the mouth synonym: "protostomic gastrulation" NARROW [GOC:dph] is_a: GO:0007369 ! gastrulation relationship: in_taxon NCBITaxon:33317 {all_only="true"} ! Protostomia -relationship: only_in_taxon NCBITaxon:33317 ! Protostomia +relationship: RO:0002160 NCBITaxon:33317 ! only in taxon Protostomia [Term] id: GO:0001704 @@ -35223,9 +35289,9 @@ namespace: biological_process def: "The formation of the ectoderm, mesoderm and endoderm during gastrulation." [GOC:go_curators] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000923 ! germ layer +intersection_of: RO:0002297 UBERON:0000923 ! results in formation of anatomical entity germ layer relationship: part_of GO:0007369 ! gastrulation -relationship: results_in_formation_of_anatomical_entity UBERON:0000923 ! germ layer +relationship: RO:0002297 UBERON:0000923 ! results in formation of anatomical entity germ layer [Term] id: GO:0001705 @@ -35234,9 +35300,9 @@ namespace: biological_process def: "The formation of ectoderm during gastrulation." [GOC:go_curators] is_a: GO:0001704 ! formation of primary germ layer intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000924 ! ectoderm +intersection_of: RO:0002297 UBERON:0000924 ! results in formation of anatomical entity ectoderm relationship: part_of GO:0007398 ! ectoderm development -relationship: results_in_formation_of_anatomical_entity UBERON:0000924 ! ectoderm +relationship: RO:0002297 UBERON:0000924 ! results in formation of anatomical entity ectoderm [Term] id: GO:0001706 @@ -35246,9 +35312,9 @@ def: "The formation of the endoderm during gastrulation." [GOC:go_curators] synonym: "endoblast formation" NARROW [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0001704 ! formation of primary germ layer intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000925 ! endoderm +intersection_of: RO:0002297 UBERON:0000925 ! results in formation of anatomical entity endoderm relationship: part_of GO:0007492 ! endoderm development -relationship: results_in_formation_of_anatomical_entity UBERON:0000925 ! endoderm +relationship: RO:0002297 UBERON:0000925 ! results in formation of anatomical entity endoderm [Term] id: GO:0001707 @@ -35257,9 +35323,9 @@ namespace: biological_process def: "The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts." [GOC:go_curators] is_a: GO:0001704 ! formation of primary germ layer intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000926 ! mesoderm +intersection_of: RO:0002297 UBERON:0000926 ! results in formation of anatomical entity mesoderm relationship: part_of GO:0048332 ! mesoderm morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0000926 ! mesoderm +relationship: RO:0002297 UBERON:0000926 ! results in formation of anatomical entity mesoderm [Term] id: GO:0001738 @@ -35269,8 +35335,8 @@ def: "The morphogenetic process in which the anatomical structures of a polarize synonym: "epithelial polarization" EXACT [GOC:dph] is_a: GO:0002009 ! morphogenesis of an epithelium intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0010137 ! polarized epithelium -relationship: results_in_morphogenesis_of UBERON:0010137 ! polarized epithelium +intersection_of: RO:0002298 UBERON:0010137 ! results in morphogenesis of polarized epithelium +relationship: RO:0002298 UBERON:0010137 ! results in morphogenesis of polarized epithelium [Term] id: GO:0001743 @@ -35280,9 +35346,9 @@ def: "The initial developmental process that will lead to the formation of an ey synonym: "optic placode formation" RELATED [] is_a: GO:0060788 ! ectodermal placode formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003073 ! lens placode +intersection_of: RO:0002297 UBERON:0003073 ! results in formation of anatomical entity lens placode relationship: part_of GO:0048598 ! embryonic morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0003073 ! lens placode +relationship: RO:0002297 UBERON:0003073 ! results in formation of anatomical entity lens placode [Term] id: GO:0001744 @@ -35294,9 +35360,9 @@ synonym: "optic lobe and Bolwig's organ precursor formation" EXACT [] synonym: "optic lobe placode formation" EXACT [] is_a: GO:0060788 ! ectodermal placode formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:6001059 ! insect visual primordium +intersection_of: RO:0002297 UBERON:6001059 ! results in formation of anatomical entity insect visual primordium relationship: part_of GO:0001748 ! insect visual primordium development -relationship: results_in_formation_of_anatomical_entity UBERON:6001059 ! insect visual primordium +relationship: RO:0002297 UBERON:6001059 ! results in formation of anatomical entity insect visual primordium [Term] id: GO:0001745 @@ -35306,11 +35372,11 @@ def: "The morphogenetic process in which the anatomical structures of the compou synonym: "insect-type retina morphogenesis" EXACT [PMID:11735386] is_a: GO:0048592 ! eye morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000018 ! compound eye +intersection_of: RO:0002298 UBERON:0000018 ! results in morphogenesis of compound eye relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of GO:0048749 ! compound eye development -relationship: results_in_morphogenesis_of UBERON:0000018 ! compound eye +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda +relationship: RO:0002298 UBERON:0000018 ! results in morphogenesis of compound eye [Term] id: GO:0001748 @@ -35323,17 +35389,17 @@ synonym: "optic lobe placode development" EXACT [] synonym: "optic placode development" BROAD [] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:6001059 ! insect visual primordium +intersection_of: RO:0002296 UBERON:6001059 ! results in development of insect visual primordium relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda -relationship: results_in_development_of UBERON:6001059 ! insect visual primordium +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda +relationship: RO:0002296 UBERON:6001059 ! results in development of insect visual primordium [Term] id: GO:0001750 name: photoreceptor outer segment namespace: cellular_component def: "The outer segment of a vertebrate photoreceptor that contains a stack of membrane discs embedded with photoreceptor proteins." [GOC:cilia, GOC:krc, GOC:pde, ISBN:0824072820, PMID:19501669, PMID:26574505, PMID:6771304] -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of CL:0000210 ! photoreceptor cell relationship: part_of CL:0000540 ! neuron relationship: part_of GO:0005929 ! cilium @@ -35346,9 +35412,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized features of an eye photoreceptor cell." [GOC:go_curators] is_a: GO:0001754 ! eye photoreceptor cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:2000019 ! compound eye photoreceptor cell +intersection_of: RO:0002315 CL:2000019 ! results in acquisition of features of compound eye photoreceptor cell relationship: part_of GO:0001745 ! compound eye morphogenesis -relationship: results_in_acquisition_of_features_of CL:2000019 ! compound eye photoreceptor cell +relationship: RO:0002315 CL:2000019 ! results in acquisition of features of compound eye photoreceptor cell [Term] id: GO:0001754 @@ -35357,9 +35423,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized features of a photoreceptor cell, as found in the eye, the primary visual organ of most organisms." [GOC:go_curators] is_a: GO:0046530 ! photoreceptor cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000287 ! eye photoreceptor cell +intersection_of: RO:0002315 CL:0000287 ! results in acquisition of features of eye photoreceptor cell relationship: part_of GO:0048592 ! eye morphogenesis -relationship: results_in_acquisition_of_features_of CL:0000287 ! eye photoreceptor cell +relationship: RO:0002315 CL:0000287 ! results in acquisition of features of eye photoreceptor cell [Term] id: GO:0001755 @@ -35368,9 +35434,9 @@ namespace: biological_process def: "The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo." [GOC:ascb_2009, GOC:dph, GOC:tb, ISBN:0878932437] is_a: GO:0090497 ! mesenchymal cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000333 ! migratory neural crest cell +intersection_of: RO:0002565 CL:0000333 ! results in movement of migratory neural crest cell relationship: part_of GO:0014032 ! neural crest cell development -relationship: results_in_movement_of CL:0000333 ! migratory neural crest cell +relationship: RO:0002565 CL:0000333 ! results in movement of migratory neural crest cell [Term] id: GO:0001756 @@ -35383,10 +35449,10 @@ is_a: GO:0009952 ! anterior/posterior pattern specification is_a: GO:0035282 ! segmentation is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002329 ! somite +intersection_of: RO:0002297 UBERON:0002329 ! results in formation of anatomical entity somite relationship: part_of GO:0043009 ! chordate embryonic development relationship: part_of GO:0061053 ! somite development -relationship: results_in_formation_of_anatomical_entity UBERON:0002329 ! somite +relationship: RO:0002297 UBERON:0002329 ! results in formation of anatomical entity somite [Term] id: GO:0001763 @@ -35409,9 +35475,9 @@ xref: Wikipedia:Neural_development#Neuron_migration xref: Wikipedia:Neuron_migration is_a: GO:0016477 ! cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000540 ! neuron +intersection_of: RO:0002565 CL:0000540 ! results in movement of neuron relationship: part_of GO:0048699 ! generation of neurons -relationship: results_in_movement_of CL:0000540 ! neuron +relationship: RO:0002565 CL:0000540 ! results in movement of neuron [Term] id: GO:0001767 @@ -35421,8 +35487,8 @@ def: "The directed orientation of lymphocyte signaling molecules and associated synonym: "lymphocyte polarization" EXACT [] is_a: GO:0030010 ! establishment of cell polarity intersection_of: GO:0030010 ! establishment of cell polarity -intersection_of: occurs_in CL:0000542 ! lymphocyte -relationship: occurs_in CL:0000542 ! lymphocyte +intersection_of: BFO:0000066 CL:0000542 ! occurs in lymphocyte +relationship: BFO:0000066 CL:0000542 ! occurs in lymphocyte relationship: part_of GO:0046649 ! lymphocyte activation [Term] @@ -35438,8 +35504,8 @@ synonym: "T lymphocyte polarization" EXACT [] synonym: "T-cell polarization" EXACT [] is_a: GO:0001767 ! establishment of lymphocyte polarity intersection_of: GO:0030010 ! establishment of cell polarity -intersection_of: occurs_in CL:0000084 ! T cell -relationship: occurs_in CL:0000084 ! T cell +intersection_of: BFO:0000066 CL:0000084 ! occurs in T cell +relationship: BFO:0000066 CL:0000084 ! occurs in T cell relationship: part_of GO:0042110 ! T cell activation [Term] @@ -35456,8 +35522,8 @@ synonym: "establishment of B-cell polarity" EXACT [] synonym: "establishment of B-lymphocyte polarity" EXACT [] is_a: GO:0001767 ! establishment of lymphocyte polarity intersection_of: GO:0030010 ! establishment of cell polarity -intersection_of: occurs_in CL:0000236 ! B cell -relationship: occurs_in CL:0000236 ! B cell +intersection_of: BFO:0000066 CL:0000236 ! occurs in B cell +relationship: BFO:0000066 CL:0000236 ! occurs in B cell relationship: part_of GO:0042113 ! B cell activation [Term] @@ -35470,8 +35536,8 @@ synonym: "natural killer cell polarization" EXACT [] synonym: "NK cell polarization" EXACT [] is_a: GO:0001767 ! establishment of lymphocyte polarity intersection_of: GO:0030010 ! establishment of cell polarity -intersection_of: occurs_in CL:0000623 ! natural killer cell -relationship: occurs_in CL:0000623 ! natural killer cell +intersection_of: BFO:0000066 CL:0000623 ! occurs in natural killer cell +relationship: BFO:0000066 CL:0000623 ! occurs in natural killer cell relationship: part_of GO:0030101 ! natural killer cell activation [Term] @@ -35481,8 +35547,8 @@ namespace: biological_process def: "The change in morphology and behavior of a dendritic cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor." [GOC:mgi_curators, ISBN:0781735149] is_a: GO:0002274 ! myeloid leukocyte activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000782 ! myeloid dendritic cell -relationship: has_primary_input CL:0000782 ! myeloid dendritic cell +intersection_of: RO:0004009 CL:0000782 ! has primary input myeloid dendritic cell +relationship: RO:0004009 CL:0000782 ! has primary input myeloid dendritic cell [Term] id: GO:0001775 @@ -35493,7 +35559,7 @@ subset: goslim_pir is_a: GO:0009987 ! cellular process is_a: GO:0032501 ! multicellular organismal process relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24416" xsd:anyURI [Term] @@ -35507,10 +35573,10 @@ synonym: "leucocyte homeostasis" EXACT [] is_a: GO:0002376 ! immune system process is_a: GO:0048872 ! homeostasis of number of cells intersection_of: GO:0048872 ! homeostasis of number of cells -intersection_of: acts_on_population_of CL:0000738 ! leukocyte -relationship: acts_on_population_of CL:0000738 ! leukocyte +intersection_of: RO:0012003 CL:0000738 ! acts on population of leukocyte relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata +relationship: RO:0012003 CL:0000738 ! acts on population of leukocyte [Term] id: GO:0001777 @@ -35524,11 +35590,11 @@ synonym: "T-cell homeostatic proliferation" EXACT [] synonym: "T-lymphocyte homeostatic proliferation" EXACT [] is_a: GO:0042098 ! T cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000084 ! T cell intersection_of: part_of GO:0042592 ! homeostatic process -relationship: acts_on_population_of CL:0000084 ! T cell +intersection_of: RO:0012003 CL:0000084 ! acts on population of T cell relationship: part_of GO:0042592 ! homeostatic process relationship: part_of GO:0043029 ! T cell homeostasis +relationship: RO:0012003 CL:0000084 ! acts on population of T cell [Term] id: GO:0001779 @@ -35541,8 +35607,8 @@ synonym: "NK cell differentiation" EXACT [] is_a: GO:0030098 ! lymphocyte differentiation is_a: GO:0030101 ! natural killer cell activation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000623 ! natural killer cell -relationship: results_in_acquisition_of_features_of CL:0000623 ! natural killer cell +intersection_of: RO:0002315 CL:0000623 ! results in acquisition of features of natural killer cell +relationship: RO:0002315 CL:0000623 ! results in acquisition of features of natural killer cell [Term] id: GO:0001780 @@ -35553,8 +35619,8 @@ comment: Note that this term represents the return of neutrophil levels to stabl is_a: GO:0001776 ! leukocyte homeostasis is_a: GO:0002262 ! myeloid cell homeostasis intersection_of: GO:0048872 ! homeostasis of number of cells -intersection_of: acts_on_population_of CL:0000775 ! neutrophil -relationship: acts_on_population_of CL:0000775 ! neutrophil +intersection_of: RO:0012003 CL:0000775 ! acts on population of neutrophil +relationship: RO:0012003 CL:0000775 ! acts on population of neutrophil [Term] id: GO:0001781 @@ -35570,8 +35636,8 @@ is_a: GO:0006925 ! inflammatory cell apoptotic process is_a: GO:0033028 ! myeloid cell apoptotic process is_a: GO:0071887 ! leukocyte apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000775 ! neutrophil -relationship: occurs_in CL:0000775 ! neutrophil +intersection_of: BFO:0000066 CL:0000775 ! occurs in neutrophil +relationship: BFO:0000066 CL:0000775 ! occurs in neutrophil relationship: part_of GO:0001780 ! neutrophil homeostasis [Term] @@ -35585,8 +35651,8 @@ synonym: "B-cell homeostasis" EXACT [] synonym: "B-lymphocyte homeostasis" EXACT [] is_a: GO:0002260 ! lymphocyte homeostasis intersection_of: GO:0048872 ! homeostasis of number of cells -intersection_of: acts_on_population_of CL:0000236 ! B cell -relationship: acts_on_population_of CL:0000236 ! B cell +intersection_of: RO:0012003 CL:0000236 ! acts on population of B cell +relationship: RO:0012003 CL:0000236 ! acts on population of B cell [Term] id: GO:0001783 @@ -35615,8 +35681,8 @@ synonym: "programmed cell death, B-cells" EXACT [] synonym: "programmed cell death, B-lymphocytes" EXACT [] is_a: GO:0070227 ! lymphocyte apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000236 ! B cell -relationship: occurs_in CL:0000236 ! B cell +intersection_of: BFO:0000066 CL:0000236 ! occurs in B cell +relationship: BFO:0000066 CL:0000236 ! occurs in B cell [Term] id: GO:0001787 @@ -35627,8 +35693,8 @@ synonym: "NK cell proliferation" EXACT [] is_a: GO:0030101 ! natural killer cell activation is_a: GO:0046651 ! lymphocyte proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000623 ! natural killer cell -relationship: acts_on_population_of CL:0000623 ! natural killer cell +intersection_of: RO:0012003 CL:0000623 ! acts on population of natural killer cell +relationship: RO:0012003 CL:0000623 ! acts on population of natural killer cell [Term] id: GO:0001816 @@ -35669,10 +35735,10 @@ synonym: "regulation of cytokine synthesis" EXACT [] is_a: GO:0010468 ! regulation of gene expression is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001816 ! cytokine production +intersection_of: RO:0002211 GO:0001816 ! regulates (processual) cytokine production relationship: never_in_taxon NCBITaxon:4896 ! Schizosaccharomyces pombe relationship: never_in_taxon NCBITaxon:4932 ! Saccharomyces cerevisiae -relationship: regulates GO:0001816 ! cytokine production +relationship: RO:0002211 GO:0001816 ! regulates (processual) cytokine production [Term] id: GO:0001818 @@ -35699,8 +35765,8 @@ is_a: GO:0001817 ! regulation of cytokine production is_a: GO:0010629 ! negative regulation of gene expression is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001816 ! cytokine production -relationship: negatively_regulates GO:0001816 ! cytokine production +intersection_of: RO:0002212 GO:0001816 ! negatively regulates cytokine production +relationship: RO:0002212 GO:0001816 ! negatively regulates cytokine production [Term] id: GO:0001819 @@ -35720,22 +35786,22 @@ is_a: GO:0001817 ! regulation of cytokine production is_a: GO:0010628 ! positive regulation of gene expression is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001816 ! cytokine production -relationship: positively_regulates GO:0001816 ! cytokine production +intersection_of: RO:0002213 GO:0001816 ! positively regulates cytokine production +relationship: RO:0002213 GO:0001816 ! positively regulates cytokine production [Term] id: GO:0001820 name: serotonin secretion namespace: biological_process -def: "The regulated release of serotonin by a cell. Serotonin (5-hydroxytryptamine, or 5-HT) is a monoamine synthesised in serotonergic neurons in the central nervous system, enterochromaffin cells in the gastrointestinal tract and some immune system cells." [GOC:ef, ISBN:0198506732, ISBN:0781735149] +def: "The regulated release of serotonin by a cell. Serotonin (5-hydroxytryptamine, or 5-HT) is a monoamine synthesized in serotonergic neurons in the central nervous system, enterochromaffin cells in the gastrointestinal tract and some immune system cells." [GOC:ef, ISBN:0198506732, ISBN:0781735149] synonym: "5-HT secretion" EXACT [] synonym: "5-hydroxytryptamine secretion" EXACT [] synonym: "serotonin release" RELATED [GOC:tb] is_a: GO:0006837 ! serotonin transport is_a: GO:0023061 ! signal release intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:350546 ! serotonin(1+) -relationship: has_primary_input CHEBI:350546 ! serotonin(1+) +intersection_of: RO:0004009 CHEBI:350546 ! has primary input serotonin(1+) +relationship: RO:0004009 CHEBI:350546 ! has primary input serotonin(1+) [Term] id: GO:0001821 @@ -35745,8 +35811,8 @@ def: "The regulated release of histamine by a cell or tissue. It is formed by de is_a: GO:0046903 ! secretion is_a: GO:0051608 ! histamine transport intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:58432 ! histaminium -relationship: has_primary_input CHEBI:58432 ! histaminium +intersection_of: RO:0004009 CHEBI:58432 ! has primary input histaminium +relationship: RO:0004009 CHEBI:58432 ! has primary input histaminium [Term] id: GO:0001822 @@ -35757,9 +35823,9 @@ synonym: "nephrogenesis" RELATED [GOC:rph] xref: Wikipedia:Kidney_development is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002113 ! kidney +intersection_of: RO:0002296 UBERON:0002113 ! results in development of kidney relationship: part_of GO:0072001 ! renal system development -relationship: results_in_development_of UBERON:0002113 ! kidney +relationship: RO:0002296 UBERON:0002113 ! results in development of kidney [Term] id: GO:0001823 @@ -35769,8 +35835,8 @@ def: "The process whose specific outcome is the progression of the mesonephros o synonym: "Wolffian body development" EXACT [GOC:dph] is_a: GO:0001822 ! kidney development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000080 ! mesonephros -relationship: results_in_development_of UBERON:0000080 ! mesonephros +intersection_of: RO:0002296 UBERON:0000080 ! results in development of mesonephros +relationship: RO:0002296 UBERON:0000080 ! results in development of mesonephros [Term] id: GO:0001824 @@ -35780,11 +35846,11 @@ def: "The process whose specific outcome is the progression of the blastocyst ov comment: See also the Anatomical Dictionary for Mouse Development ontology terms 'TS5, embryo ; EMAP:23', 'TS5, inner cell mass ; EMAP:24' and 'TS5, trophectoderm; EMAP:28'. is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000358 ! blastocyst +intersection_of: RO:0002296 UBERON:0000358 ! results in development of blastocyst relationship: in_taxon NCBITaxon:32525 {all_only="true"} ! Theria -relationship: only_in_taxon NCBITaxon:32525 ! Theria relationship: part_of GO:0001701 ! in utero embryonic development -relationship: results_in_development_of UBERON:0000358 ! blastocyst +relationship: RO:0002160 NCBITaxon:32525 ! only in taxon Theria +relationship: RO:0002296 UBERON:0000358 ! results in development of blastocyst [Term] id: GO:0001825 @@ -35794,9 +35860,9 @@ def: "The initial formation of a blastocyst from a solid ball of cells known as comment: See also the Anatomical Dictionary for Mouse Development ontology term 'TS3, compacted morula ; EMAP:9'. is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000358 ! blastocyst +intersection_of: RO:0002297 UBERON:0000358 ! results in formation of anatomical entity blastocyst relationship: part_of GO:0001824 ! blastocyst development -relationship: results_in_formation_of_anatomical_entity UBERON:0000358 ! blastocyst +relationship: RO:0002297 UBERON:0000358 ! results in formation of anatomical entity blastocyst [Term] id: GO:0001826 @@ -35806,9 +35872,9 @@ def: "The process in which a relatively unspecialized cell acquires specialized comment: See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, inner cell mass ; EMAP:14'. is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:2000020 ! inner cell mass cell +intersection_of: RO:0002315 CL:2000020 ! results in acquisition of features of inner cell mass cell relationship: part_of GO:0001825 ! blastocyst formation -relationship: results_in_acquisition_of_features_of CL:2000020 ! inner cell mass cell +relationship: RO:0002315 CL:2000020 ! results in acquisition of features of inner cell mass cell [Term] id: GO:0001829 @@ -35819,9 +35885,9 @@ comment: See also the Anatomical Dictionary for Mouse Development ontology terms synonym: "trophectoderm cell differentiation" EXACT [] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000274 ! trophectodermal cell +intersection_of: RO:0002315 CL:1000274 ! results in acquisition of features of trophectodermal cell relationship: part_of GO:0001825 ! blastocyst formation -relationship: results_in_acquisition_of_features_of CL:1000274 ! trophectodermal cell +relationship: RO:0002315 CL:1000274 ! results in acquisition of features of trophectodermal cell [Term] id: GO:0001831 @@ -35833,9 +35899,9 @@ synonym: "trophectoderm cellular morphogenesis" EXACT [] is_a: GO:0000902 ! cell morphogenesis is_a: GO:0048598 ! embryonic morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of CL:1000274 ! trophectodermal cell +intersection_of: RO:0002298 CL:1000274 ! results in morphogenesis of trophectodermal cell relationship: part_of GO:0001829 ! trophectodermal cell differentiation -relationship: results_in_morphogenesis_of CL:1000274 ! trophectodermal cell +relationship: RO:0002298 CL:1000274 ! results in morphogenesis of trophectodermal cell [Term] id: GO:0001832 @@ -35845,9 +35911,9 @@ def: "An increase in size of a blastocyst due to expansion of the blastocoelic c comment: See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, blastocoelic cavity ; EMAP:17', 'TS5, blastocoelic cavity ; EMAP:27' and 'TS6, blastocoelic cavity ; EMAP:36'. is_a: GO:0048589 ! developmental growth intersection_of: GO:0040007 ! growth -intersection_of: results_in_growth_of UBERON:0000358 ! blastocyst +intersection_of: RO:0002343 UBERON:0000358 ! results in growth of blastocyst relationship: part_of GO:0001824 ! blastocyst development -relationship: results_in_growth_of UBERON:0000358 ! blastocyst +relationship: RO:0002343 UBERON:0000358 ! results in growth of blastocyst [Term] id: GO:0001833 @@ -35857,9 +35923,9 @@ def: "The proliferation of cells in the inner cell mass." [GOC:dph, GOC:isa_comp comment: See also the Anatomical Dictionary for Mouse Development ontology terms 'TS4, inner cell mass ; EMAP:14' and 'TS5, inner cell mass ; EMAP:24'. is_a: GO:0008283 ! cell population proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:2000020 ! inner cell mass cell -relationship: acts_on_population_of CL:2000020 ! inner cell mass cell +intersection_of: RO:0012003 CL:2000020 ! acts on population of inner cell mass cell relationship: part_of GO:0001832 ! blastocyst growth +relationship: RO:0012003 CL:2000020 ! acts on population of inner cell mass cell [Term] id: GO:0001834 @@ -35870,9 +35936,9 @@ comment: See also the Anatomical Dictionary for Mouse Development ontology terms synonym: "trophectoderm cell proliferation" EXACT [] is_a: GO:0008283 ! cell population proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:1000274 ! trophectodermal cell -relationship: acts_on_population_of CL:1000274 ! trophectodermal cell +intersection_of: RO:0012003 CL:1000274 ! acts on population of trophectodermal cell relationship: part_of GO:0001832 ! blastocyst growth +relationship: RO:0012003 CL:1000274 ! acts on population of trophectodermal cell [Term] id: GO:0001837 @@ -35884,10 +35950,10 @@ synonym: "epithelial-mesenchymal transition" EXACT [] synonym: "mesenchymal cell differentiation from epithelial cell" EXACT [GOC:BHF, GOC:dph, GOC:rl] is_a: GO:0048762 ! mesenchymal cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: has_primary_input CL:0000066 ! epithelial cell -intersection_of: results_in_acquisition_of_features_of CL:0008019 ! mesenchymal cell -relationship: has_primary_input CL:0000066 ! epithelial cell -relationship: results_in_acquisition_of_features_of CL:0008019 ! mesenchymal cell +intersection_of: RO:0002315 CL:0008019 ! results in acquisition of features of mesenchymal cell +intersection_of: RO:0004009 CL:0000066 ! has primary input epithelial cell +relationship: RO:0002315 CL:0008019 ! results in acquisition of features of mesenchymal cell +relationship: RO:0004009 CL:0000066 ! has primary input epithelial cell [Term] id: GO:0001838 @@ -35904,9 +35970,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the neural plate are generated and organized. The neural plate is a specialized region of columnar epithelial cells in the dorsal ectoderm that will give rise to nervous system tissue." [GOC:dph, ISBN:0878932437] is_a: GO:0016331 ! morphogenesis of embryonic epithelium intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003075 ! neural plate +intersection_of: RO:0002298 UBERON:0003075 ! results in morphogenesis of neural plate relationship: part_of GO:0001840 ! neural plate development -relationship: results_in_morphogenesis_of UBERON:0003075 ! neural plate +relationship: RO:0002298 UBERON:0003075 ! results in morphogenesis of neural plate [Term] id: GO:0001840 @@ -35915,9 +35981,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the neural plate over time, from its formation to the mature structure. The neural plate is a flat, thickened layer of ectodermal cells. The underlying dorsal mesoderm signals the ectodermal cells above it to elongate into columnar neural plate cells. The neural plate subsequently develops into the neural tube, which gives rise to the central nervous system." [GOC:dph, GOC:ef, ISBN:0878932437, ISBN:0878932585] is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003075 ! neural plate +intersection_of: RO:0002296 UBERON:0003075 ! results in development of neural plate relationship: part_of GO:0043009 ! chordate embryonic development -relationship: results_in_development_of UBERON:0003075 ! neural plate +relationship: RO:0002296 UBERON:0003075 ! results in development of neural plate [Term] id: GO:0001841 @@ -35930,9 +35996,9 @@ synonym: "neurulation" EXACT [] xref: Wikipedia:Neurulation is_a: GO:0001838 ! embryonic epithelial tube formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001049 ! neural tube +intersection_of: RO:0002297 UBERON:0001049 ! results in formation of anatomical entity neural tube relationship: part_of GO:0021915 ! neural tube development -relationship: results_in_formation_of_anatomical_entity UBERON:0001049 ! neural tube +relationship: RO:0002297 UBERON:0001049 ! results in formation of anatomical entity neural tube [Term] id: GO:0001842 @@ -35944,9 +36010,9 @@ is_a: GO:0016331 ! morphogenesis of embryonic epithelium is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis is_a: GO:0060571 ! morphogenesis of an epithelial fold intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005062 ! neural fold +intersection_of: RO:0002297 UBERON:0005062 ! results in formation of anatomical entity neural fold relationship: part_of GO:0014020 ! primary neural tube formation -relationship: results_in_formation_of_anatomical_entity UBERON:0005062 ! neural fold +relationship: RO:0002297 UBERON:0005062 ! results in formation of anatomical entity neural fold [Term] id: GO:0001843 @@ -35955,9 +36021,9 @@ namespace: biological_process def: "The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline." [GOC:dph, ISBN:0878932437] is_a: GO:0060606 ! tube closure intersection_of: GO:0060606 ! tube closure -intersection_of: has_primary_input UBERON:0001049 ! neural tube -relationship: has_primary_input UBERON:0001049 ! neural tube +intersection_of: RO:0004009 UBERON:0001049 ! has primary input neural tube relationship: part_of GO:0014020 ! primary neural tube formation +relationship: RO:0004009 UBERON:0001049 ! has primary input neural tube [Term] id: GO:0001873 @@ -35967,9 +36033,9 @@ def: "Combining with a polysaccharide and transmitting the signal to initiate an synonym: "polysaccharide receptor activity" BROAD [] is_a: GO:0038187 ! pattern recognition receptor activity intersection_of: GO:0038023 ! signaling receptor activity -intersection_of: has_primary_input CHEBI:18154 ! polysaccharide +intersection_of: RO:0004009 CHEBI:18154 ! has primary input polysaccharide relationship: has_part GO:0030247 ! polysaccharide binding -relationship: has_primary_input CHEBI:18154 ! polysaccharide +relationship: RO:0004009 CHEBI:18154 ! has primary input polysaccharide [Term] id: GO:0001878 @@ -35979,8 +36045,8 @@ def: "Any process that results in a change in state or activity of a cell or an comment: defined as response to Saccharomycotina (true yeasts). This excludes fission yeast. is_a: GO:0009620 ! response to fungus intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input NCBITaxon:147537 ! Saccharomycotina -relationship: has_primary_input NCBITaxon:147537 ! Saccharomycotina +intersection_of: RO:0004009 NCBITaxon:147537 ! has primary input Saccharomycotina +relationship: RO:0004009 NCBITaxon:147537 ! has primary input Saccharomycotina [Term] id: GO:0001882 @@ -35992,8 +36058,8 @@ is_a: GO:0097159 ! organic cyclic compound binding is_a: GO:0097367 ! carbohydrate derivative binding is_a: GO:1901363 ! heterocyclic compound binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:33838 ! nucleoside -relationship: has_primary_input CHEBI:33838 ! nucleoside +intersection_of: RO:0004009 CHEBI:33838 ! has primary input nucleoside +relationship: RO:0004009 CHEBI:33838 ! has primary input nucleoside [Term] id: GO:0001883 @@ -36002,8 +36068,8 @@ namespace: molecular_function def: "Binding to a purine nucleoside, a compound consisting of a purine base linked either to ribose or deoxyribose." [GOC:hjd] is_a: GO:0001882 ! nucleoside binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:26394 ! purine nucleoside -relationship: has_primary_input CHEBI:26394 ! purine nucleoside +intersection_of: RO:0004009 CHEBI:26394 ! has primary input purine nucleoside +relationship: RO:0004009 CHEBI:26394 ! has primary input purine nucleoside [Term] id: GO:0001885 @@ -36012,10 +36078,10 @@ namespace: biological_process def: "The progression of an endothelial cell over time, from its formation to the mature structure." [GOC:dph] is_a: GO:0002064 ! epithelial cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000115 ! endothelial cell +intersection_of: RO:0002296 CL:0000115 ! results in development of endothelial cell relationship: part_of GO:0003158 ! endothelium development relationship: part_of GO:0045446 ! endothelial cell differentiation -relationship: results_in_development_of CL:0000115 ! endothelial cell +relationship: RO:0002296 CL:0000115 ! results in development of endothelial cell [Term] id: GO:0001886 @@ -36024,9 +36090,9 @@ namespace: biological_process def: "The change in form (cell shape and size) that occurs during the differentiation of an endothelial cell." [GOC:ascb_2009, GOC:dph, GOC:tb] is_a: GO:0003382 ! epithelial cell morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of CL:0000115 ! endothelial cell +intersection_of: RO:0002298 CL:0000115 ! results in morphogenesis of endothelial cell relationship: part_of GO:0001885 ! endothelial cell development -relationship: results_in_morphogenesis_of CL:0000115 ! endothelial cell +relationship: RO:0002298 CL:0000115 ! results in morphogenesis of endothelial cell [Term] id: GO:0001889 @@ -36035,9 +36101,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes." [GOC:add, ISBN:068340007X] is_a: GO:0048732 ! gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002107 ! liver +intersection_of: RO:0002296 UBERON:0002107 ! results in development of liver relationship: part_of GO:0061008 ! hepaticobiliary system development -relationship: results_in_development_of UBERON:0002107 ! liver +relationship: RO:0002296 UBERON:0002107 ! results in development of liver [Term] id: GO:0001890 @@ -36048,10 +36114,10 @@ synonym: "placental development" EXACT [] synonym: "placentation" EXACT [GOC:dph, GOC:tb] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001987 ! placenta +intersection_of: RO:0002296 UBERON:0001987 ! results in development of placenta relationship: in_taxon NCBITaxon:32525 {all_only="true"} ! Theria -relationship: only_in_taxon NCBITaxon:32525 ! Theria -relationship: results_in_development_of UBERON:0001987 ! placenta +relationship: RO:0002160 NCBITaxon:32525 ! only in taxon Theria +relationship: RO:0002296 UBERON:0001987 ! results in development of placenta [Term] id: GO:0001892 @@ -36061,10 +36127,10 @@ def: "The embryonically driven process whose specific outcome is the progression synonym: "fetal placenta development" EXACT [GOC:dph] is_a: GO:0048568 ! embryonic organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0007106 ! chorionic villus +intersection_of: RO:0002296 UBERON:0007106 ! results in development of chorionic villus relationship: part_of GO:0001701 ! in utero embryonic development relationship: part_of GO:0001890 ! placenta development -relationship: results_in_development_of UBERON:0007106 ! chorionic villus +relationship: RO:0002296 UBERON:0007106 ! results in development of chorionic villus [Term] id: GO:0001893 @@ -36076,9 +36142,9 @@ is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0048856 ! anatomical structure development is_a: GO:0060135 ! maternal process involved in female pregnancy intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002450 ! decidua +intersection_of: RO:0002296 UBERON:0002450 ! results in development of decidua relationship: part_of GO:0001890 ! placenta development -relationship: results_in_development_of UBERON:0002450 ! decidua +relationship: RO:0002296 UBERON:0002450 ! results in development of decidua [Term] id: GO:0001894 @@ -36112,10 +36178,10 @@ synonym: "leucocyte mediated cytotoxicity" EXACT [] is_a: GO:0001906 ! cell killing is_a: GO:0002443 ! leukocyte mediated immunity intersection_of: GO:0001906 ! cell killing -intersection_of: process_has_causal_agent CL:0000738 ! leukocyte +intersection_of: RO:0002608 CL:0000738 ! process has causal agent leukocyte relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata -relationship: process_has_causal_agent CL:0000738 ! leukocyte +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata +relationship: RO:0002608 CL:0000738 ! process has causal agent leukocyte [Term] id: GO:0001910 @@ -36129,8 +36195,8 @@ synonym: "regulation of leucocyte mediated cytotoxicity" EXACT [] is_a: GO:0002703 ! regulation of leukocyte mediated immunity is_a: GO:0031341 ! regulation of cell killing intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001909 ! leukocyte mediated cytotoxicity -relationship: regulates GO:0001909 ! leukocyte mediated cytotoxicity +intersection_of: RO:0002211 GO:0001909 ! regulates (processual) leukocyte mediated cytotoxicity +relationship: RO:0002211 GO:0001909 ! regulates (processual) leukocyte mediated cytotoxicity [Term] id: GO:0001911 @@ -36147,8 +36213,8 @@ is_a: GO:0001910 ! regulation of leukocyte mediated cytotoxicity is_a: GO:0002704 ! negative regulation of leukocyte mediated immunity is_a: GO:0031342 ! negative regulation of cell killing intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001909 ! leukocyte mediated cytotoxicity -relationship: negatively_regulates GO:0001909 ! leukocyte mediated cytotoxicity +intersection_of: RO:0002212 GO:0001909 ! negatively regulates leukocyte mediated cytotoxicity +relationship: RO:0002212 GO:0001909 ! negatively regulates leukocyte mediated cytotoxicity [Term] id: GO:0001912 @@ -36166,8 +36232,8 @@ is_a: GO:0001910 ! regulation of leukocyte mediated cytotoxicity is_a: GO:0002705 ! positive regulation of leukocyte mediated immunity is_a: GO:0031343 ! positive regulation of cell killing intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001909 ! leukocyte mediated cytotoxicity -relationship: positively_regulates GO:0001909 ! leukocyte mediated cytotoxicity +intersection_of: RO:0002213 GO:0001909 ! positively regulates leukocyte mediated cytotoxicity +relationship: RO:0002213 GO:0001909 ! positively regulates leukocyte mediated cytotoxicity [Term] id: GO:0001913 @@ -36188,8 +36254,8 @@ synonym: "T-lymphocyte mediated cytotoxicity" EXACT [] is_a: GO:0001909 ! leukocyte mediated cytotoxicity is_a: GO:0002456 ! T cell mediated immunity intersection_of: GO:0001906 ! cell killing -intersection_of: process_has_causal_agent CL:0000084 ! T cell -relationship: process_has_causal_agent CL:0000084 ! T cell +intersection_of: RO:0002608 CL:0000084 ! process has causal agent T cell +relationship: RO:0002608 CL:0000084 ! process has causal agent T cell [Term] id: GO:0001914 @@ -36210,8 +36276,8 @@ synonym: "regulation of T-lymphocyte mediated cytotoxicity" EXACT [] is_a: GO:0001910 ! regulation of leukocyte mediated cytotoxicity is_a: GO:0002709 ! regulation of T cell mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001913 ! T cell mediated cytotoxicity -relationship: regulates GO:0001913 ! T cell mediated cytotoxicity +intersection_of: RO:0002211 GO:0001913 ! regulates (processual) T cell mediated cytotoxicity +relationship: RO:0002211 GO:0001913 ! regulates (processual) T cell mediated cytotoxicity [Term] id: GO:0001915 @@ -36237,8 +36303,8 @@ is_a: GO:0001911 ! negative regulation of leukocyte mediated cytotoxicity is_a: GO:0001914 ! regulation of T cell mediated cytotoxicity is_a: GO:0002710 ! negative regulation of T cell mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001913 ! T cell mediated cytotoxicity -relationship: negatively_regulates GO:0001913 ! T cell mediated cytotoxicity +intersection_of: RO:0002212 GO:0001913 ! negatively regulates T cell mediated cytotoxicity +relationship: RO:0002212 GO:0001913 ! negatively regulates T cell mediated cytotoxicity [Term] id: GO:0001916 @@ -36265,8 +36331,8 @@ is_a: GO:0001912 ! positive regulation of leukocyte mediated cytotoxicity is_a: GO:0001914 ! regulation of T cell mediated cytotoxicity is_a: GO:0002711 ! positive regulation of T cell mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001913 ! T cell mediated cytotoxicity -relationship: positively_regulates GO:0001913 ! T cell mediated cytotoxicity +intersection_of: RO:0002213 GO:0001913 ! positively regulates T cell mediated cytotoxicity +relationship: RO:0002213 GO:0001913 ! positively regulates T cell mediated cytotoxicity [Term] id: GO:0001917 @@ -36274,7 +36340,7 @@ name: photoreceptor inner segment namespace: cellular_component def: "The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs." [GOC:add, PMID:12019563] subset: goslim_pir -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of CL:0000210 ! photoreceptor cell relationship: part_of CL:0000540 ! neuron @@ -36289,8 +36355,8 @@ synonym: "B-1 B-cell homeostasis" EXACT [] synonym: "B-1 B-lymphocyte homeostasis" EXACT [] is_a: GO:0001782 ! B cell homeostasis intersection_of: GO:0048872 ! homeostasis of number of cells -intersection_of: acts_on_population_of CL:0000819 ! B-1 B cell -relationship: acts_on_population_of CL:0000819 ! B-1 B cell +intersection_of: RO:0012003 CL:0000819 ! acts on population of B-1 B cell +relationship: RO:0012003 CL:0000819 ! acts on population of B-1 B cell [Term] id: GO:0001923 @@ -36303,8 +36369,8 @@ synonym: "B-1 B-cell differentiation" EXACT [] synonym: "B-1 B-lymphocyte differentiation" EXACT [] is_a: GO:0002335 ! mature B cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000819 ! B-1 B cell -relationship: results_in_acquisition_of_features_of CL:0000819 ! B-1 B cell +intersection_of: RO:0002315 CL:0000819 ! results in acquisition of features of B-1 B cell +relationship: RO:0002315 CL:0000819 ! results in acquisition of features of B-1 B cell [Term] id: GO:0001924 @@ -36318,8 +36384,8 @@ synonym: "regulation of B-1 B-cell differentiation" EXACT [] synonym: "regulation of B-1 B-lymphocyte differentiation" EXACT [] is_a: GO:0045577 ! regulation of B cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001923 ! B-1 B cell differentiation -relationship: regulates GO:0001923 ! B-1 B cell differentiation +intersection_of: RO:0002211 GO:0001923 ! regulates (processual) B-1 B cell differentiation +relationship: RO:0002211 GO:0001923 ! regulates (processual) B-1 B cell differentiation [Term] id: GO:0001925 @@ -36338,8 +36404,8 @@ synonym: "negative regulation of B-1 B-lymphocyte differentiation" EXACT [] is_a: GO:0001924 ! regulation of B-1 B cell differentiation is_a: GO:0045578 ! negative regulation of B cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001923 ! B-1 B cell differentiation -relationship: negatively_regulates GO:0001923 ! B-1 B cell differentiation +intersection_of: RO:0002212 GO:0001923 ! negatively regulates B-1 B cell differentiation +relationship: RO:0002212 GO:0001923 ! negatively regulates B-1 B cell differentiation [Term] id: GO:0001926 @@ -36359,26 +36425,29 @@ synonym: "upregulation of B-1 B cell differentiation" EXACT [] is_a: GO:0001924 ! regulation of B-1 B cell differentiation is_a: GO:0045579 ! positive regulation of B cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001923 ! B-1 B cell differentiation -relationship: positively_regulates GO:0001923 ! B-1 B cell differentiation +intersection_of: RO:0002213 GO:0001923 ! positively regulates B-1 B cell differentiation +relationship: RO:0002213 GO:0001923 ! positively regulates B-1 B cell differentiation [Term] id: GO:0001932 name: regulation of protein phosphorylation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein." [GOC:hjd] +subset: gocheck_obsoletion_candidate synonym: "regulation of protein amino acid phosphorylation" EXACT [GOC:bf] is_a: GO:0031399 ! regulation of protein modification process is_a: GO:0042325 ! regulation of phosphorylation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006468 ! protein phosphorylation -relationship: regulates GO:0006468 ! protein phosphorylation +intersection_of: RO:0002211 GO:0006468 ! regulates (processual) protein phosphorylation +relationship: RO:0002211 GO:0006468 ! regulates (processual) protein phosphorylation +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28278" xsd:anyURI [Term] id: GO:0001933 name: negative regulation of protein phosphorylation namespace: biological_process def: "Any process that stops, prevents or reduces the rate of addition of phosphate groups to amino acids within a protein." [GOC:hjd] +subset: gocheck_obsoletion_candidate synonym: "down regulation of protein amino acid phosphorylation" EXACT [] synonym: "down-regulation of protein amino acid phosphorylation" EXACT [] synonym: "downregulation of protein amino acid phosphorylation" EXACT [] @@ -36388,15 +36457,16 @@ is_a: GO:0001932 ! regulation of protein phosphorylation is_a: GO:0031400 ! negative regulation of protein modification process is_a: GO:0042326 ! negative regulation of phosphorylation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006468 ! protein phosphorylation -relationship: negatively_regulates GO:0006468 ! protein phosphorylation +intersection_of: RO:0002212 GO:0006468 ! negatively regulates protein phosphorylation +relationship: RO:0002212 GO:0006468 ! negatively regulates protein phosphorylation +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28278" xsd:anyURI [Term] id: GO:0001934 name: positive regulation of protein phosphorylation namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein." [GOC:hjd] -comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_obsoletion_candidate synonym: "activation of protein amino acid phosphorylation" NARROW [] synonym: "positive regulation of protein amino acid phosphorylation" EXACT [GOC:bf] synonym: "stimulation of protein amino acid phosphorylation" NARROW [] @@ -36407,9 +36477,10 @@ is_a: GO:0001932 ! regulation of protein phosphorylation is_a: GO:0031401 ! positive regulation of protein modification process is_a: GO:0042327 ! positive regulation of phosphorylation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006468 ! protein phosphorylation -relationship: positively_regulates GO:0006468 ! protein phosphorylation +intersection_of: RO:0002213 GO:0006468 ! positively regulates protein phosphorylation +relationship: RO:0002213 GO:0006468 ! positively regulates protein phosphorylation property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28278" xsd:anyURI [Term] id: GO:0001935 @@ -36418,8 +36489,8 @@ namespace: biological_process def: "The multiplication or reproduction of endothelial cells, resulting in the expansion of a cell population. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium." [GOC:add, ISBN:0781735149] is_a: GO:0050673 ! epithelial cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000115 ! endothelial cell -relationship: acts_on_population_of CL:0000115 ! endothelial cell +intersection_of: RO:0012003 CL:0000115 ! acts on population of endothelial cell +relationship: RO:0012003 CL:0000115 ! acts on population of endothelial cell [Term] id: GO:0001936 @@ -36428,8 +36499,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of endothelial cell proliferation." [GOC:add] is_a: GO:0050678 ! regulation of epithelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001935 ! endothelial cell proliferation -relationship: regulates GO:0001935 ! endothelial cell proliferation +intersection_of: RO:0002211 GO:0001935 ! regulates (processual) endothelial cell proliferation +relationship: RO:0002211 GO:0001935 ! regulates (processual) endothelial cell proliferation [Term] id: GO:0001937 @@ -36443,8 +36514,8 @@ synonym: "inhibition of endothelial cell proliferation" NARROW [] is_a: GO:0001936 ! regulation of endothelial cell proliferation is_a: GO:0050680 ! negative regulation of epithelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001935 ! endothelial cell proliferation -relationship: negatively_regulates GO:0001935 ! endothelial cell proliferation +intersection_of: RO:0002212 GO:0001935 ! negatively regulates endothelial cell proliferation +relationship: RO:0002212 GO:0001935 ! negatively regulates endothelial cell proliferation [Term] id: GO:0001938 @@ -36459,8 +36530,8 @@ synonym: "upregulation of endothelial cell proliferation" EXACT [] is_a: GO:0001936 ! regulation of endothelial cell proliferation is_a: GO:0050679 ! positive regulation of epithelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001935 ! endothelial cell proliferation -relationship: positively_regulates GO:0001935 ! endothelial cell proliferation +intersection_of: RO:0002213 GO:0001935 ! positively regulates endothelial cell proliferation +relationship: RO:0002213 GO:0001935 ! positively regulates endothelial cell proliferation [Term] id: GO:0001940 @@ -36478,9 +36549,9 @@ synonym: "post-synaptic membrane organization" EXACT [] synonym: "postsynaptic membrane organisation" EXACT [] is_a: GO:0061024 ! membrane organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0045211 ! postsynaptic membrane +intersection_of: RO:0002592 GO:0045211 ! results in organization of postsynaptic membrane relationship: part_of GO:0099173 ! postsynapse organization -relationship: results_in_organization_of GO:0045211 ! postsynaptic membrane +relationship: RO:0002592 GO:0045211 ! results in organization of postsynaptic membrane [Term] id: GO:0001942 @@ -36491,9 +36562,9 @@ def: "The process whose specific outcome is the progression of the hair follicle is_a: GO:0022405 ! hair cycle process is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002073 ! hair follicle +intersection_of: RO:0002296 UBERON:0002073 ! results in development of hair follicle relationship: part_of GO:0098773 ! skin epidermis development -relationship: results_in_development_of UBERON:0002073 ! hair follicle +relationship: RO:0002296 UBERON:0002073 ! results in development of hair follicle [Term] id: GO:0001944 @@ -36503,9 +36574,9 @@ def: "The process whose specific outcome is the progression of the vasculature o synonym: "vascular system development" RELATED [] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002049 ! vasculature +intersection_of: RO:0002296 UBERON:0002049 ! results in development of vasculature relationship: part_of GO:0072359 ! circulatory system development -relationship: results_in_development_of UBERON:0002049 ! vasculature +relationship: RO:0002296 UBERON:0002049 ! results in development of vasculature [Term] id: GO:0001945 @@ -36514,9 +36585,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a lymph vessel over time, from its formation to the mature structure." [GOC:dph, UBERON:0001473] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001473 ! lymphatic vessel +intersection_of: RO:0002296 UBERON:0001473 ! results in development of lymphatic vessel relationship: part_of GO:0001944 ! vasculature development -relationship: results_in_development_of UBERON:0001473 ! lymphatic vessel +relationship: RO:0002296 UBERON:0001473 ! results in development of lymphatic vessel [Term] id: GO:0001946 @@ -36528,9 +36599,9 @@ xref: Wikipedia:Lymphangiogenesis is_a: GO:0009653 ! anatomical structure morphogenesis is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001473 ! lymphatic vessel +intersection_of: RO:0002297 UBERON:0001473 ! results in formation of anatomical entity lymphatic vessel relationship: part_of GO:0036303 ! lymph vessel morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001473 ! lymphatic vessel +relationship: RO:0002297 UBERON:0001473 ! results in formation of anatomical entity lymphatic vessel [Term] id: GO:0001949 @@ -36540,9 +36611,9 @@ def: "The process in which a relatively unspecialized epidermal cell acquires th synonym: "sebocytes differentiation" NARROW [GOC:mgi_curators] is_a: GO:0009913 ! epidermal cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:2000021 ! sebaceous gland cell +intersection_of: RO:0002315 CL:2000021 ! results in acquisition of features of sebaceous gland cell relationship: part_of GO:0048733 ! sebaceous gland development -relationship: results_in_acquisition_of_features_of CL:2000021 ! sebaceous gland cell +relationship: RO:0002315 CL:2000021 ! results in acquisition of features of sebaceous gland cell [Term] id: GO:0001955 @@ -36551,9 +36622,9 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for a blood vessel to attain its fully functional state." [GOC:dph] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0001981 ! blood vessel +intersection_of: RO:0002299 UBERON:0001981 ! results in maturation of blood vessel relationship: part_of GO:0001568 ! blood vessel development -relationship: results_in_maturation_of UBERON:0001981 ! blood vessel +relationship: RO:0002299 UBERON:0001981 ! results in maturation of blood vessel [Term] id: GO:0001956 @@ -36570,9 +36641,9 @@ is_a: GO:0050806 ! positive regulation of synaptic transmission is_a: GO:0051590 ! positive regulation of neurotransmitter transport is_a: GO:1903532 ! positive regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007269 ! neurotransmitter secretion -relationship: positively_regulates GO:0007268 ! chemical synaptic transmission -relationship: positively_regulates GO:0007269 ! neurotransmitter secretion +intersection_of: RO:0002213 GO:0007269 ! positively regulates neurotransmitter secretion +relationship: RO:0002213 GO:0007268 ! positively regulates chemical synaptic transmission +relationship: RO:0002213 GO:0007269 ! positively regulates neurotransmitter secretion [Term] id: GO:0001957 @@ -36605,9 +36676,9 @@ synonym: "regulation of cytokine mediated signalling pathway" EXACT [] is_a: GO:0009966 ! regulation of signal transduction is_a: GO:0060759 ! regulation of response to cytokine stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0019221 ! cytokine-mediated signaling pathway -relationship: regulates GO:0019221 ! cytokine-mediated signaling pathway -relationship: regulates GO:0034097 ! response to cytokine +intersection_of: RO:0002211 GO:0019221 ! regulates (processual) cytokine-mediated signaling pathway +relationship: RO:0002211 GO:0019221 ! regulates (processual) cytokine-mediated signaling pathway +relationship: RO:0002211 GO:0034097 ! regulates (processual) response to cytokine [Term] id: GO:0001960 @@ -36625,9 +36696,9 @@ is_a: GO:0001959 ! regulation of cytokine-mediated signaling pathway is_a: GO:0009968 ! negative regulation of signal transduction is_a: GO:0060761 ! negative regulation of response to cytokine stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0019221 ! cytokine-mediated signaling pathway -relationship: negatively_regulates GO:0019221 ! cytokine-mediated signaling pathway -relationship: negatively_regulates GO:0034097 ! response to cytokine +intersection_of: RO:0002212 GO:0019221 ! negatively regulates cytokine-mediated signaling pathway +relationship: RO:0002212 GO:0019221 ! negatively regulates cytokine-mediated signaling pathway +relationship: RO:0002212 GO:0034097 ! negatively regulates response to cytokine [Term] id: GO:0001961 @@ -36646,9 +36717,9 @@ is_a: GO:0001959 ! regulation of cytokine-mediated signaling pathway is_a: GO:0009967 ! positive regulation of signal transduction is_a: GO:0060760 ! positive regulation of response to cytokine stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0019221 ! cytokine-mediated signaling pathway -relationship: positively_regulates GO:0019221 ! cytokine-mediated signaling pathway -relationship: positively_regulates GO:0034097 ! response to cytokine +intersection_of: RO:0002213 GO:0019221 ! positively regulates cytokine-mediated signaling pathway +relationship: RO:0002213 GO:0019221 ! positively regulates cytokine-mediated signaling pathway +relationship: RO:0002213 GO:0034097 ! positively regulates response to cytokine [Term] id: GO:0001963 @@ -36657,8 +36728,8 @@ namespace: biological_process def: "The vesicular release of dopamine. from a presynapse, across a chemical synapse, the subsequent activation of dopamine receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse." [GOC:dos, GOC:dph] synonym: "dopaminergic synaptic transmission" EXACT [] is_a: GO:0007268 ! chemical synaptic transmission -relationship: has_participant CHEBI:59905 ! dopaminium(1+) -relationship: has_participant CL:0000700 ! dopaminergic neuron +relationship: RO:0000057 CHEBI:59905 ! has participant dopaminium(1+) +relationship: RO:0000057 CL:0000700 ! has participant dopaminergic neuron [Term] id: GO:0001973 @@ -36690,7 +36761,7 @@ id: GO:0001977 name: renal system process involved in regulation of blood volume namespace: biological_process def: "A slow mechanism of blood pressure regulation that responds to changes in pressure resulting from fluid and salt intake by modulating the quantity of blood in the circulatory system." [GOC:dph, GOC:tb, ISBN:0721643949] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "renal blood volume control of blood pressure" RELATED [] synonym: "renal regulation of blood volume" RELATED [GOC:dph, GOC:tb] is_a: GO:0003071 ! renal system process involved in regulation of systemic arterial blood pressure @@ -36767,9 +36838,9 @@ synonym: "renin release into blood stream" EXACT [] is_a: GO:0009306 ! protein secretion is_a: GO:0023061 ! signal release intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input PR:000013883 ! renin -relationship: has_primary_input PR:000013883 ! renin +intersection_of: RO:0004009 PR:000013883 ! has primary input renin relationship: part_of GO:0001999 ! renal response to blood flow involved in circulatory renin-angiotensin regulation of systemic arterial blood pressure +relationship: RO:0004009 PR:000013883 ! has primary input renin [Term] id: GO:0002007 @@ -36790,9 +36861,9 @@ def: "The process in which the anatomical structures of epithelia are generated synonym: "epithelium morphogenesis" EXACT [] is_a: GO:0048729 ! tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000483 ! epithelium +intersection_of: RO:0002298 UBERON:0000483 ! results in morphogenesis of epithelium relationship: part_of GO:0060429 ! epithelium development -relationship: results_in_morphogenesis_of UBERON:0000483 ! epithelium +relationship: RO:0002298 UBERON:0000483 ! results in morphogenesis of epithelium [Term] id: GO:0002011 @@ -36801,8 +36872,8 @@ namespace: biological_process def: "The process in which the anatomical structures of an epithelial sheet are generated and organized. An epithelial sheet is a flat surface consisting of closely packed epithelial cells." [GOC:jl] is_a: GO:0002009 ! morphogenesis of an epithelium intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0010136 ! epithelial sheet -relationship: results_in_morphogenesis_of UBERON:0010136 ! epithelial sheet +intersection_of: RO:0002298 UBERON:0010136 ! results in morphogenesis of epithelial sheet +relationship: RO:0002298 UBERON:0010136 ! results in morphogenesis of epithelial sheet [Term] id: GO:0002016 @@ -36823,9 +36894,9 @@ is_a: GO:0003071 ! renal system process involved in regulation of systemic arter is_a: GO:2000858 ! regulation of aldosterone secretion intersection_of: GO:0003014 ! renal system process intersection_of: part_of GO:0002016 ! regulation of blood volume by renin-angiotensin -intersection_of: regulates GO:0035932 ! aldosterone secretion +intersection_of: RO:0002211 GO:0035932 ! regulates (processual) aldosterone secretion relationship: part_of GO:0002016 ! regulation of blood volume by renin-angiotensin -relationship: regulates GO:0035932 ! aldosterone secretion +relationship: RO:0002211 GO:0035932 ! regulates (processual) aldosterone secretion [Term] id: GO:0002027 @@ -36846,8 +36917,8 @@ synonym: "regulation of Na+ transport" EXACT [] synonym: "regulation of sodium transport" EXACT [] is_a: GO:0010959 ! regulation of metal ion transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006814 ! sodium ion transport -relationship: regulates GO:0006814 ! sodium ion transport +intersection_of: RO:0002211 GO:0006814 ! regulates (processual) sodium ion transport +relationship: RO:0002211 GO:0006814 ! regulates (processual) sodium ion transport [Term] id: GO:0002036 @@ -36860,8 +36931,8 @@ synonym: "regulation of L-glutamate transport" BROAD [] synonym: "regulation of L-glutamate uptake" EXACT [GOC:TermGenie] is_a: GO:0010958 ! regulation of amino acid import across plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0098712 ! L-glutamate import across plasma membrane -relationship: regulates GO:0098712 ! L-glutamate import across plasma membrane +intersection_of: RO:0002211 GO:0098712 ! regulates (processual) L-glutamate import across plasma membrane +relationship: RO:0002211 GO:0098712 ! regulates (processual) L-glutamate import across plasma membrane created_by: al creation_date: 2012-06-13T07:34:08Z @@ -36891,8 +36962,8 @@ is_a: GO:0002036 ! regulation of L-glutamate import across plasma membrane is_a: GO:0034763 ! negative regulation of transmembrane transport is_a: GO:0051956 ! negative regulation of amino acid transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0098712 ! L-glutamate import across plasma membrane -relationship: negatively_regulates GO:0098712 ! L-glutamate import across plasma membrane +intersection_of: RO:0002212 GO:0098712 ! negatively regulates L-glutamate import across plasma membrane +relationship: RO:0002212 GO:0098712 ! negatively regulates L-glutamate import across plasma membrane created_by: al creation_date: 2012-06-13T07:34:30Z @@ -36922,8 +36993,8 @@ is_a: GO:0002036 ! regulation of L-glutamate import across plasma membrane is_a: GO:0034764 ! positive regulation of transmembrane transport is_a: GO:0051957 ! positive regulation of amino acid transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0098712 ! L-glutamate import across plasma membrane -relationship: positively_regulates GO:0098712 ! L-glutamate import across plasma membrane +intersection_of: RO:0002213 GO:0098712 ! positively regulates L-glutamate import across plasma membrane +relationship: RO:0002213 GO:0098712 ! positively regulates L-glutamate import across plasma membrane created_by: al creation_date: 2012-06-13T07:34:38Z @@ -36941,8 +37012,8 @@ is_a: GO:0050769 ! positive regulation of neurogenesis is_a: GO:1902692 ! regulation of neuroblast proliferation is_a: GO:2000179 ! positive regulation of neural precursor cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007405 ! neuroblast proliferation -relationship: positively_regulates GO:0007405 ! neuroblast proliferation +intersection_of: RO:0002213 GO:0007405 ! positively regulates neuroblast proliferation +relationship: RO:0002213 GO:0007405 ! positively regulates neuroblast proliferation [Term] id: GO:0002053 @@ -36957,8 +37028,8 @@ synonym: "upregulation of mesenchymal cell proliferation" EXACT [] is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:0010464 ! regulation of mesenchymal cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0010463 ! mesenchymal cell proliferation -relationship: positively_regulates GO:0010463 ! mesenchymal cell proliferation +intersection_of: RO:0002213 GO:0010463 ! positively regulates mesenchymal cell proliferation +relationship: RO:0002213 GO:0010463 ! positively regulates mesenchymal cell proliferation [Term] id: GO:0002054 @@ -36969,8 +37040,8 @@ subset: goslim_pir is_a: GO:0097159 ! organic cyclic compound binding is_a: GO:1901363 ! heterocyclic compound binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:18282 ! nucleobase -relationship: has_primary_input CHEBI:18282 ! nucleobase +intersection_of: RO:0004009 CHEBI:18282 ! has primary input nucleobase +relationship: RO:0004009 CHEBI:18282 ! has primary input nucleobase [Term] id: GO:0002055 @@ -36980,8 +37051,8 @@ def: "Binding to adenine, a purine base." [GOC:hjd] synonym: "6-aminopurine binding" EXACT [] is_a: GO:0002060 ! purine nucleobase binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:16708 ! adenine -relationship: has_primary_input CHEBI:16708 ! adenine +intersection_of: RO:0004009 CHEBI:16708 ! has primary input adenine +relationship: RO:0004009 CHEBI:16708 ! has primary input adenine [Term] id: GO:0002060 @@ -36992,8 +37063,8 @@ synonym: "purine base binding" EXACT [GOC:go_curators] synonym: "purine binding" RELATED [] is_a: GO:0002054 ! nucleobase binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:26386 ! purine nucleobase -relationship: has_primary_input CHEBI:26386 ! purine nucleobase +intersection_of: RO:0004009 CHEBI:26386 ! has primary input purine nucleobase +relationship: RO:0004009 CHEBI:26386 ! has primary input purine nucleobase [Term] id: GO:0002062 @@ -37002,9 +37073,9 @@ namespace: biological_process def: "The process in which a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage." [GOC:dph] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000138 ! chondrocyte +intersection_of: RO:0002315 CL:0000138 ! results in acquisition of features of chondrocyte relationship: part_of GO:0051216 ! cartilage development -relationship: results_in_acquisition_of_features_of CL:0000138 ! chondrocyte +relationship: RO:0002315 CL:0000138 ! results in acquisition of features of chondrocyte [Term] id: GO:0002063 @@ -37013,9 +37084,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a chondrocyte over time, from its commitment to its mature state. Chondrocyte development does not include the steps involved in committing a chondroblast to a chondrocyte fate." [GOC:dph] is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000138 ! chondrocyte +intersection_of: RO:0002296 CL:0000138 ! results in development of chondrocyte relationship: part_of GO:0002062 ! chondrocyte differentiation -relationship: results_in_development_of CL:0000138 ! chondrocyte +relationship: RO:0002296 CL:0000138 ! results in development of chondrocyte [Term] id: GO:0002064 @@ -37024,9 +37095,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of an epithelial cell over time, from its formation to the mature structure. An epithelial cell is a cell usually found in a two-dimensional sheet with a free surface." [GOC:dph] is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000066 ! epithelial cell +intersection_of: RO:0002296 CL:0000066 ! results in development of epithelial cell relationship: part_of GO:0030855 ! epithelial cell differentiation -relationship: results_in_development_of CL:0000066 ! epithelial cell +relationship: RO:0002296 CL:0000066 ! results in development of epithelial cell [Term] id: GO:0002065 @@ -37035,8 +37106,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a columnar/cuboidal epithelial cell. A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube." [GOC:dph] is_a: GO:0030855 ! epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000075 ! columnar/cuboidal epithelial cell -relationship: results_in_acquisition_of_features_of CL:0000075 ! columnar/cuboidal epithelial cell +intersection_of: RO:0002315 CL:0000075 ! results in acquisition of features of columnar/cuboidal epithelial cell +relationship: RO:0002315 CL:0000075 ! results in acquisition of features of columnar/cuboidal epithelial cell [Term] id: GO:0002066 @@ -37045,9 +37116,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a columnar/cuboidal epithelial cell over time, from its formation to the mature structure. A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube." [GOC:dph] is_a: GO:0002064 ! epithelial cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000075 ! columnar/cuboidal epithelial cell +intersection_of: RO:0002296 CL:0000075 ! results in development of columnar/cuboidal epithelial cell relationship: part_of GO:0002065 ! columnar/cuboidal epithelial cell differentiation -relationship: results_in_development_of CL:0000075 ! columnar/cuboidal epithelial cell +relationship: RO:0002296 CL:0000075 ! results in development of columnar/cuboidal epithelial cell [Term] id: GO:0002067 @@ -37056,8 +37127,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a glandular epithelial cell. A glandular epithelial cell is a columnar/cuboidal epithelial cell found in a two dimensional sheet with a free surface exposed to the lumen of a gland." [GOC:dph] is_a: GO:0002065 ! columnar/cuboidal epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000150 ! glandular epithelial cell -relationship: results_in_acquisition_of_features_of CL:0000150 ! glandular epithelial cell +intersection_of: RO:0002315 CL:0000150 ! results in acquisition of features of glandular epithelial cell +relationship: RO:0002315 CL:0000150 ! results in acquisition of features of glandular epithelial cell [Term] id: GO:0002068 @@ -37066,9 +37137,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a glandular epithelial cell over time, from its formation to the mature structure. A glandular epithelial cell is a columnar/cuboidal epithelial cell is a cell found in a two dimensional sheet with a free surface exposed to the lumen of a gland." [GOC:dph] is_a: GO:0002066 ! columnar/cuboidal epithelial cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000150 ! glandular epithelial cell +intersection_of: RO:0002296 CL:0000150 ! results in development of glandular epithelial cell relationship: part_of GO:0002067 ! glandular epithelial cell differentiation -relationship: results_in_development_of CL:0000150 ! glandular epithelial cell +relationship: RO:0002296 CL:0000150 ! results in development of glandular epithelial cell [Term] id: GO:0002069 @@ -37077,9 +37148,9 @@ namespace: biological_process def: "The developmental process, independent of morphogenetic (shape) change, that is required for a columna/cuboidal epithelial cell to attain its fully functional state. A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube." [GOC:dph] is_a: GO:0002070 ! epithelial cell maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of CL:0000075 ! columnar/cuboidal epithelial cell +intersection_of: RO:0002299 CL:0000075 ! results in maturation of columnar/cuboidal epithelial cell relationship: part_of GO:0002066 ! columnar/cuboidal epithelial cell development -relationship: results_in_maturation_of CL:0000075 ! columnar/cuboidal epithelial cell +relationship: RO:0002299 CL:0000075 ! results in maturation of columnar/cuboidal epithelial cell [Term] id: GO:0002070 @@ -37088,9 +37159,9 @@ namespace: biological_process def: "The developmental process, independent of morphogenetic (shape) change, that is required for an epithelial cell to attain its fully functional state. An epithelial cell is a cell usually found in a two-dimensional sheet with a free surface." [GOC:dph] is_a: GO:0048469 ! cell maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of CL:0000066 ! epithelial cell +intersection_of: RO:0002299 CL:0000066 ! results in maturation of epithelial cell relationship: part_of GO:0002064 ! epithelial cell development -relationship: results_in_maturation_of CL:0000066 ! epithelial cell +relationship: RO:0002299 CL:0000066 ! results in maturation of epithelial cell [Term] id: GO:0002071 @@ -37099,9 +37170,9 @@ namespace: biological_process def: "The developmental process, independent of morphogenetic (shape) change, that is required for a glandular epithelial cell to attain its fully functional state. A glandular epithelial cell is a columnar/cuboidal epithelial cell is a cell found in a two dimensional sheet with a free surface exposed to the lumen of a gland." [GOC:dph] is_a: GO:0002069 ! columnar/cuboidal epithelial cell maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of CL:0000150 ! glandular epithelial cell +intersection_of: RO:0002299 CL:0000150 ! results in maturation of glandular epithelial cell relationship: part_of GO:0002068 ! glandular epithelial cell development -relationship: results_in_maturation_of CL:0000150 ! glandular epithelial cell +relationship: RO:0002299 CL:0000150 ! results in maturation of glandular epithelial cell [Term] id: GO:0002072 @@ -37111,9 +37182,9 @@ def: "The invagination of the optic vesicle to form two-walled indentations, the synonym: "optic cup morphogenesis involved in camera-style eye development" EXACT [] is_a: GO:0016331 ! morphogenesis of embryonic epithelium intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003072 ! optic cup +intersection_of: RO:0002298 UBERON:0003072 ! results in morphogenesis of optic cup relationship: part_of GO:0060900 ! embryonic camera-type eye formation -relationship: results_in_morphogenesis_of UBERON:0003072 ! optic cup +relationship: RO:0002298 UBERON:0003072 ! results in morphogenesis of optic cup [Term] id: GO:0002074 @@ -37123,9 +37194,9 @@ def: "The process whose specific outcome is the progression of the extraocular s is_a: GO:0007519 ! skeletal muscle tissue development is_a: GO:0060538 ! skeletal muscle organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001601 ! extra-ocular muscle +intersection_of: RO:0002296 UBERON:0001601 ! results in development of extra-ocular muscle relationship: part_of GO:0043010 ! camera-type eye development -relationship: results_in_development_of UBERON:0001601 ! extra-ocular muscle +relationship: RO:0002296 UBERON:0001601 ! results in development of extra-ocular muscle [Term] id: GO:0002075 @@ -37134,8 +37205,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the somitomeric trunk muscle over time, from its formation to the mature structure. The somitomeric trunk muscle is derived from somitomeric mesoderm. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. An example of this process is found in Mus musculus." [GOC:dph, PMID:16638982] is_a: GO:0060538 ! skeletal muscle organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004138 ! somitomeric trunk muscle -relationship: results_in_development_of UBERON:0004138 ! somitomeric trunk muscle +intersection_of: RO:0002296 UBERON:0004138 ! results in development of somitomeric trunk muscle +relationship: RO:0002296 UBERON:0004138 ! results in development of somitomeric trunk muscle [Term] id: GO:0002076 @@ -37144,9 +37215,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of an osteoblast over time, from its formation to the mature structure. Osteoblast development does not include the steps involved in committing a cranial neural crest cell or an osteoprogenitor cell to an osteoblast fate. An osteoblast is a cell that gives rise to bone." [GOC:dph] is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000062 ! osteoblast +intersection_of: RO:0002296 CL:0000062 ! results in development of osteoblast relationship: part_of GO:0001649 ! osteoblast differentiation -relationship: results_in_development_of CL:0000062 ! osteoblast +relationship: RO:0002296 CL:0000062 ! results in development of osteoblast [Term] id: GO:0002080 @@ -37171,8 +37242,8 @@ is_a: GO:0030857 ! negative regulation of epithelial cell differentiation is_a: GO:0045995 ! regulation of embryonic development is_a: GO:0048505 ! regulation of timing of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060563 ! neuroepithelial cell differentiation -relationship: negatively_regulates GO:0060563 ! neuroepithelial cell differentiation +intersection_of: RO:0002212 GO:0060563 ! negatively regulates neuroepithelial cell differentiation +relationship: RO:0002212 GO:0060563 ! negatively regulates neuroepithelial cell differentiation [Term] id: GO:0002087 @@ -37184,8 +37255,8 @@ synonym: "regulation of respiratory gaseous exchange by neurological system proc is_a: GO:0044065 ! regulation of respiratory system process is_a: GO:0050877 ! nervous system process intersection_of: GO:0050877 ! nervous system process -intersection_of: regulates GO:0007585 ! respiratory gaseous exchange by respiratory system -relationship: regulates GO:0007585 ! respiratory gaseous exchange by respiratory system +intersection_of: RO:0002211 GO:0007585 ! regulates (processual) respiratory gaseous exchange by respiratory system +relationship: RO:0002211 GO:0007585 ! regulates (processual) respiratory gaseous exchange by respiratory system [Term] id: GO:0002088 @@ -37196,9 +37267,9 @@ synonym: "lens development" EXACT [] synonym: "lens development in camera-style eye" EXACT [] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000965 ! lens of camera-type eye +intersection_of: RO:0002296 UBERON:0000965 ! results in development of lens of camera-type eye relationship: part_of GO:0043010 ! camera-type eye development -relationship: results_in_development_of UBERON:0000965 ! lens of camera-type eye +relationship: RO:0002296 UBERON:0000965 ! results in development of lens of camera-type eye [Term] id: GO:0002089 @@ -37209,10 +37280,10 @@ synonym: "lens morphogenesis" EXACT [] synonym: "lens morphogenesis in camera-style eye" EXACT [] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000965 ! lens of camera-type eye +intersection_of: RO:0002298 UBERON:0000965 ! results in morphogenesis of lens of camera-type eye relationship: part_of GO:0002088 ! lens development in camera-type eye relationship: part_of GO:0048593 ! camera-type eye morphogenesis -relationship: results_in_morphogenesis_of UBERON:0000965 ! lens of camera-type eye +relationship: RO:0002298 UBERON:0000965 ! results in morphogenesis of lens of camera-type eye [Term] id: GO:0002093 @@ -37223,10 +37294,10 @@ synonym: "hair cell morphogenesis" BROAD [GO:dph] is_a: GO:0048598 ! embryonic morphogenesis is_a: GO:0048667 ! cell morphogenesis involved in neuron differentiation intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of CL:0000202 ! auditory hair cell +intersection_of: RO:0002298 CL:0000202 ! results in morphogenesis of auditory hair cell relationship: part_of GO:0042472 ! inner ear morphogenesis relationship: part_of GO:0060117 ! auditory receptor cell development -relationship: results_in_morphogenesis_of CL:0000202 ! auditory hair cell +relationship: RO:0002298 CL:0000202 ! results in morphogenesis of auditory hair cell [Term] id: GO:0002117 @@ -37242,10 +37313,10 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the nematode larva over time, from its formation to the mature structure. Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew." [GOC:ems, GOC:kmv] is_a: GO:0002164 ! larval development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0009850 ! nematode larva +intersection_of: RO:0002296 UBERON:0009850 ! results in development of nematode larva relationship: in_taxon NCBITaxon:33213 {all_only="true"} ! Bilateria -relationship: only_in_taxon NCBITaxon:33213 ! Bilateria -relationship: results_in_development_of UBERON:0009850 ! nematode larva +relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria +relationship: RO:0002296 UBERON:0009850 ! results in development of nematode larva [Term] id: GO:0002158 @@ -37254,8 +37325,8 @@ namespace: biological_process def: "The multiplication or reproduction of osteoclasts, resulting in the expansion of an osteoclast cell population. An osteoclast is a specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue, which typically differentiates from monocytes." [CL:0000092, GOC:hjd] is_a: GO:0070661 ! leukocyte proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000092 ! osteoclast -relationship: acts_on_population_of CL:0000092 ! osteoclast +intersection_of: RO:0012003 CL:0000092 ! acts on population of osteoclast +relationship: RO:0012003 CL:0000092 ! acts on population of osteoclast created_by: hjd creation_date: 2010-02-03T01:50:37Z @@ -37275,7 +37346,7 @@ def: "The process whose specific outcome is the progression of the instar larva is_a: GO:0007275 ! multicellular organism development is_a: GO:0009791 ! post-embryonic development relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda [Term] id: GO:0002168 @@ -37292,8 +37363,8 @@ namespace: biological_process def: "The multiplication or reproduction of male germ cells, resulting in the expansion of a cell population." [GOC:hjd] is_a: GO:0036093 ! germ cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000015 ! male germ cell -relationship: acts_on_population_of CL:0000015 ! male germ cell +intersection_of: RO:0012003 CL:0000015 ! acts on population of male germ cell +relationship: RO:0012003 CL:0000015 ! acts on population of male germ cell created_by: hjd creation_date: 2010-11-18T02:35:14Z @@ -37308,8 +37379,8 @@ subset: goslim_pombe subset: goslim_yeast is_a: GO:0006412 ! translation intersection_of: GO:0006412 ! translation -intersection_of: process_has_causal_agent GO:0022626 ! cytosolic ribosome -relationship: process_has_causal_agent GO:0022626 ! cytosolic ribosome +intersection_of: RO:0002608 GO:0022626 ! process has causal agent cytosolic ribosome +relationship: RO:0002608 GO:0022626 ! process has causal agent cytosolic ribosome created_by: hjd creation_date: 2011-06-09T03:11:53Z @@ -37344,8 +37415,8 @@ namespace: biological_process def: "The process resulting in the release of a polypeptide chain from the ribosome in the cytoplasm, usually in response to a termination codon." [GOC:hjd] is_a: GO:0006415 ! translational termination intersection_of: GO:0006415 ! translational termination -intersection_of: occurs_in GO:0005829 ! cytosol -relationship: occurs_in GO:0005829 ! cytosol +intersection_of: BFO:0000066 GO:0005829 ! occurs in cytosol +relationship: BFO:0000066 GO:0005829 ! occurs in cytosol relationship: part_of GO:0002181 ! cytoplasmic translation created_by: hjd creation_date: 2011-06-09T03:17:13Z @@ -37388,8 +37459,8 @@ def: "A response to protect an organism from a directly detected or perceived ex synonym: "physiological defense response to insect" EXACT [] is_a: GO:0006952 ! defense response intersection_of: GO:0006952 ! defense response -intersection_of: has_primary_input NCBITaxon:50557 ! Insecta -relationship: has_primary_input NCBITaxon:50557 ! Insecta +intersection_of: RO:0004009 NCBITaxon:50557 ! has primary input Insecta +relationship: RO:0004009 NCBITaxon:50557 ! has primary input Insecta [Term] id: GO:0002215 @@ -37400,8 +37471,8 @@ def: "A response to protect an organism from a directly detected or perceived ex synonym: "physiological defense response to nematode" EXACT [] is_a: GO:0006952 ! defense response intersection_of: GO:0006952 ! defense response -intersection_of: has_primary_input NCBITaxon:6231 ! Nematoda -relationship: has_primary_input NCBITaxon:6231 ! Nematoda +intersection_of: RO:0004009 NCBITaxon:6231 ! has primary input Nematoda +relationship: RO:0004009 NCBITaxon:6231 ! has primary input Nematoda [Term] id: GO:0002225 @@ -37418,9 +37489,9 @@ is_a: GO:0002702 ! positive regulation of production of molecular mediator of im is_a: GO:0002760 ! positive regulation of antimicrobial humoral response is_a: GO:0002784 ! regulation of antimicrobial peptide production intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002775 ! antimicrobial peptide production -relationship: positively_regulates GO:0002775 ! antimicrobial peptide production -relationship: positively_regulates GO:0019730 ! antimicrobial humoral response +intersection_of: RO:0002213 GO:0002775 ! positively regulates antimicrobial peptide production +relationship: RO:0002213 GO:0002775 ! positively regulates antimicrobial peptide production +relationship: RO:0002213 GO:0019730 ! positively regulates antimicrobial humoral response [Term] id: GO:0002227 @@ -37430,10 +37501,10 @@ def: "Any process of the innate immune response that takes place in the mucosal is_a: GO:0002385 ! mucosal immune response is_a: GO:0045087 ! innate immune response intersection_of: GO:0045087 ! innate immune response -intersection_of: occurs_in UBERON:0000344 ! mucosa +intersection_of: BFO:0000066 UBERON:0000344 ! occurs in mucosa +relationship: BFO:0000066 UBERON:0000344 ! occurs in mucosa relationship: in_taxon NCBITaxon:7711 {all_only="true"} ! Chordata -relationship: occurs_in UBERON:0000344 ! mucosa -relationship: only_in_taxon NCBITaxon:7711 ! Chordata +relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata [Term] id: GO:0002228 @@ -37444,8 +37515,8 @@ synonym: "NK cell mediated immunity" EXACT [] is_a: GO:0002449 ! lymphocyte mediated immunity is_a: GO:0045087 ! innate immune response intersection_of: GO:0002376 ! immune system process -intersection_of: process_has_causal_agent CL:0000623 ! natural killer cell -relationship: process_has_causal_agent CL:0000623 ! natural killer cell +intersection_of: RO:0002608 CL:0000623 ! process has causal agent natural killer cell +relationship: RO:0002608 CL:0000623 ! process has causal agent natural killer cell [Term] id: GO:0002232 @@ -37484,9 +37555,9 @@ synonym: "haemopoietic progenitor cell differentiation" EXACT [] synonym: "hemopoietic progenitor cell differentiation" EXACT [] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0008001 ! hematopoietic precursor cell +intersection_of: RO:0002315 CL:0008001 ! results in acquisition of features of hematopoietic precursor cell relationship: part_of GO:0030097 ! hemopoiesis -relationship: results_in_acquisition_of_features_of CL:0008001 ! hematopoietic precursor cell +relationship: RO:0002315 CL:0008001 ! results in acquisition of features of hematopoietic precursor cell [Term] id: GO:0002246 @@ -37511,7 +37582,7 @@ synonym: "immune memory response" EXACT [GOC:add] xref: Wikipedia:Adaptive_immune_system is_a: GO:0006955 ! immune response relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa [Term] id: GO:0002251 @@ -37536,8 +37607,8 @@ namespace: biological_process def: "The process of regulating the proliferation and elimination of lymphocytes such that the total number of lymphocytes within a whole or part of an organism is stable over time in the absence of an outside stimulus." [GOC:add, PMID:15826826, PMID:16319493, PMID:16551252, PMID:16551262] is_a: GO:0001776 ! leukocyte homeostasis intersection_of: GO:0048872 ! homeostasis of number of cells -intersection_of: acts_on_population_of CL:0000542 ! lymphocyte -relationship: acts_on_population_of CL:0000542 ! lymphocyte +intersection_of: RO:0012003 CL:0000542 ! acts on population of lymphocyte +relationship: RO:0012003 CL:0000542 ! acts on population of lymphocyte [Term] id: GO:0002262 @@ -37547,8 +37618,8 @@ def: "The process of regulating the proliferation and elimination of myeloid cel is_a: GO:0002376 ! immune system process is_a: GO:0048872 ! homeostasis of number of cells intersection_of: GO:0048872 ! homeostasis of number of cells -intersection_of: acts_on_population_of CL:0000763 ! myeloid cell -relationship: acts_on_population_of CL:0000763 ! myeloid cell +intersection_of: RO:0012003 CL:0000763 ! acts on population of myeloid cell +relationship: RO:0012003 CL:0000763 ! acts on population of myeloid cell [Term] id: GO:0002263 @@ -37606,8 +37677,8 @@ def: "A change in the morphology or behavior of a myeloid leukocyte resulting fr synonym: "myeloid leucocyte activation" EXACT [] is_a: GO:0045321 ! leukocyte activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000766 ! myeloid leukocyte -relationship: has_primary_input CL:0000766 ! myeloid leukocyte +intersection_of: RO:0004009 CL:0000766 ! has primary input myeloid leukocyte +relationship: RO:0004009 CL:0000766 ! has primary input myeloid leukocyte [Term] id: GO:0002275 @@ -37783,8 +37854,8 @@ synonym: "germinal center B-cell differentiation" EXACT [] synonym: "germinal center B-lymphocyte differentiation" EXACT [] is_a: GO:0002313 ! mature B cell differentiation involved in immune response intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000844 ! germinal center B cell -relationship: results_in_acquisition_of_features_of CL:0000844 ! germinal center B cell +intersection_of: RO:0002315 CL:0000844 ! results in acquisition of features of germinal center B cell +relationship: RO:0002315 CL:0000844 ! results in acquisition of features of germinal center B cell [Term] id: GO:0002315 @@ -37798,8 +37869,8 @@ synonym: "marginal zone B-cell differentiation" EXACT [] synonym: "marginal zone B-lymphocyte differentiation" EXACT [] is_a: GO:0002313 ! mature B cell differentiation involved in immune response intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000845 ! marginal zone B cell of spleen -relationship: results_in_acquisition_of_features_of CL:0000845 ! marginal zone B cell of spleen +intersection_of: RO:0002315 CL:0000845 ! results in acquisition of features of marginal zone B cell of spleen +relationship: RO:0002315 CL:0000845 ! results in acquisition of features of marginal zone B cell of spleen [Term] id: GO:0002316 @@ -37813,8 +37884,8 @@ synonym: "follicular B-cell differentiation" EXACT [] synonym: "follicular B-lymphocyte differentiation" EXACT [] is_a: GO:0002313 ! mature B cell differentiation involved in immune response intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000843 ! follicular B cell -relationship: results_in_acquisition_of_features_of CL:0000843 ! follicular B cell +intersection_of: RO:0002315 CL:0000843 ! results in acquisition of features of follicular B cell +relationship: RO:0002315 CL:0000843 ! results in acquisition of features of follicular B cell [Term] id: GO:0002317 @@ -37825,8 +37896,8 @@ comment: Note that immunologists typically use the word 'development' to refer t synonym: "plasma cell development" RELATED [GOC:add] is_a: GO:0002313 ! mature B cell differentiation involved in immune response intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000786 ! plasma cell -relationship: results_in_acquisition_of_features_of CL:0000786 ! plasma cell +intersection_of: RO:0002315 CL:0000786 ! results in acquisition of features of plasma cell +relationship: RO:0002315 CL:0000786 ! results in acquisition of features of plasma cell [Term] id: GO:0002318 @@ -37835,8 +37906,8 @@ namespace: biological_process def: "The process in which a precursor cell type acquires the specialized features of a myeloid progenitor cell. Myeloid progenitor cells include progenitor cells for any of the myeloid lineages." [GOC:add, PMID:16551264] is_a: GO:0002244 ! hematopoietic progenitor cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000839 ! myeloid lineage restricted progenitor cell -relationship: results_in_acquisition_of_features_of CL:0000839 ! myeloid lineage restricted progenitor cell +intersection_of: RO:0002315 CL:0000839 ! results in acquisition of features of myeloid lineage restricted progenitor cell +relationship: RO:0002315 CL:0000839 ! results in acquisition of features of myeloid lineage restricted progenitor cell [Term] id: GO:0002319 @@ -37851,8 +37922,8 @@ synonym: "memory B-lymphocyte differentiation" EXACT [] is_a: GO:0002313 ! mature B cell differentiation involved in immune response is_a: GO:0090715 ! immunological memory formation process intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000787 ! memory B cell -relationship: results_in_acquisition_of_features_of CL:0000787 ! memory B cell +intersection_of: RO:0002315 CL:0000787 ! results in acquisition of features of memory B cell +relationship: RO:0002315 CL:0000787 ! results in acquisition of features of memory B cell [Term] id: GO:0002320 @@ -37861,8 +37932,8 @@ namespace: biological_process def: "The process in which a precursor cell type acquires the specialized features of a lymphoid progenitor cell. Lymphoid progenitor cells include progenitor cells for any of the lymphoid lineages." [GOC:add, PMID:16551251, PMID:16551264] is_a: GO:0002244 ! hematopoietic progenitor cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000838 ! lymphoid lineage restricted progenitor cell -relationship: results_in_acquisition_of_features_of CL:0000838 ! lymphoid lineage restricted progenitor cell +intersection_of: RO:0002315 CL:0000838 ! results in acquisition of features of lymphoid lineage restricted progenitor cell +relationship: RO:0002315 CL:0000838 ! results in acquisition of features of lymphoid lineage restricted progenitor cell [Term] id: GO:0002321 @@ -37871,8 +37942,8 @@ namespace: biological_process def: "The process in which a precursor cell type acquires the specialized features of a natural killer cell progenitor." [GOC:add, PMID:16551251, PMID:16551264] is_a: GO:0002320 ! lymphoid progenitor cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000825 ! pro-NK cell -relationship: results_in_acquisition_of_features_of CL:0000825 ! pro-NK cell +intersection_of: RO:0002315 CL:0000825 ! results in acquisition of features of pro-NK cell +relationship: RO:0002315 CL:0000825 ! results in acquisition of features of pro-NK cell [Term] id: GO:0002322 @@ -37942,8 +38013,8 @@ synonym: "immature B-cell differentiation" EXACT [] synonym: "immature B-lymphocyte differentiation" EXACT [] is_a: GO:0030183 ! B cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000816 ! immature B cell -relationship: results_in_acquisition_of_features_of CL:0000816 ! immature B cell +intersection_of: RO:0002315 CL:0000816 ! results in acquisition of features of immature B cell +relationship: RO:0002315 CL:0000816 ! results in acquisition of features of immature B cell [Term] id: GO:0002328 @@ -37954,8 +38025,8 @@ synonym: "pro-B cell development" RELATED [GOC:add] synonym: "pro-B lymphocyte differentiation" EXACT [] is_a: GO:0002320 ! lymphoid progenitor cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000826 ! pro-B cell -relationship: results_in_acquisition_of_features_of CL:0000826 ! pro-B cell +intersection_of: RO:0002315 CL:0000826 ! results in acquisition of features of pro-B cell +relationship: RO:0002315 CL:0000826 ! results in acquisition of features of pro-B cell [Term] id: GO:0002329 @@ -37967,8 +38038,8 @@ synonym: "pre-B cell development" RELATED [GOC:add] synonym: "pre-B lymphocyte differentiation" EXACT [] is_a: GO:0002327 ! immature B cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000817 ! precursor B cell -relationship: results_in_acquisition_of_features_of CL:0000817 ! precursor B cell +intersection_of: RO:0002315 CL:0000817 ! results in acquisition of features of precursor B cell +relationship: RO:0002315 CL:0000817 ! results in acquisition of features of precursor B cell [Term] id: GO:0002332 @@ -37982,8 +38053,8 @@ synonym: "transitional stage B-cell differentiation" EXACT [] synonym: "transitional stage B-lymphocyte differentiation" EXACT [] is_a: GO:0002327 ! immature B cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000818 ! transitional stage B cell -relationship: results_in_acquisition_of_features_of CL:0000818 ! transitional stage B cell +intersection_of: RO:0002315 CL:0000818 ! results in acquisition of features of transitional stage B cell +relationship: RO:0002315 CL:0000818 ! results in acquisition of features of transitional stage B cell [Term] id: GO:0002335 @@ -37997,8 +38068,8 @@ synonym: "mature B-lymphocyte differentiation" EXACT [] synonym: "mature cell development" RELATED [GOC:add] is_a: GO:0030183 ! B cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000785 ! mature B cell -relationship: results_in_acquisition_of_features_of CL:0000785 ! mature B cell +intersection_of: RO:0002315 CL:0000785 ! results in acquisition of features of mature B cell +relationship: RO:0002315 CL:0000785 ! results in acquisition of features of mature B cell [Term] id: GO:0002337 @@ -38012,8 +38083,8 @@ synonym: "B-1a B-cell differentiation" EXACT [] synonym: "B-1a B-lymphocyte differentiation" EXACT [] is_a: GO:0001923 ! B-1 B cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000820 ! B-1a B cell -relationship: results_in_acquisition_of_features_of CL:0000820 ! B-1a B cell +intersection_of: RO:0002315 CL:0000820 ! results in acquisition of features of B-1a B cell +relationship: RO:0002315 CL:0000820 ! results in acquisition of features of B-1a B cell [Term] id: GO:0002338 @@ -38027,8 +38098,8 @@ synonym: "B-1b B-cell differentiation" EXACT [] synonym: "B-1b B-lymphocyte differentiation" EXACT [] is_a: GO:0001923 ! B-1 B cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000821 ! B-1b B cell -relationship: results_in_acquisition_of_features_of CL:0000821 ! B-1b B cell +intersection_of: RO:0002315 CL:0000821 ! results in acquisition of features of B-1b B cell +relationship: RO:0002315 CL:0000821 ! results in acquisition of features of B-1b B cell [Term] id: GO:0002339 @@ -38039,8 +38110,8 @@ synonym: "B lymphocyte selection" EXACT [] synonym: "B-cell selection" EXACT [] synonym: "B-lymphocyte selection" EXACT [] is_a: GO:0002376 ! immune system process -relationship: has_participant CL:0000236 ! B cell relationship: part_of GO:0030183 ! B cell differentiation +relationship: RO:0000057 CL:0000236 ! has participant B cell [Term] id: GO:0002343 @@ -38089,10 +38160,10 @@ synonym: "B-cell homeostatic proliferation" EXACT [] synonym: "B-lymphocyte homeostatic proliferation" EXACT [] is_a: GO:0042100 ! B cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000236 ! B cell intersection_of: part_of GO:0042592 ! homeostatic process -relationship: acts_on_population_of CL:0000236 ! B cell +intersection_of: RO:0012003 CL:0000236 ! acts on population of B cell relationship: part_of GO:0042592 ! homeostatic process +relationship: RO:0012003 CL:0000236 ! acts on population of B cell [Term] id: GO:0002359 @@ -38104,8 +38175,8 @@ synonym: "B-1 B-cell proliferation" EXACT [] synonym: "B-1 B-lymphocyte proliferation" EXACT [] is_a: GO:0042100 ! B cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000819 ! B-1 B cell -relationship: acts_on_population_of CL:0000819 ! B-1 B cell +intersection_of: RO:0012003 CL:0000819 ! acts on population of B-1 B cell +relationship: RO:0012003 CL:0000819 ! acts on population of B-1 B cell [Term] id: GO:0002366 @@ -38153,8 +38224,8 @@ synonym: "B-lymphocyte cytokine production" EXACT [] is_a: GO:0002367 ! cytokine production involved in immune response is_a: GO:0019724 ! B cell mediated immunity intersection_of: GO:0001816 ! cytokine production -intersection_of: process_has_causal_agent CL:0000236 ! B cell -relationship: process_has_causal_agent CL:0000236 ! B cell +intersection_of: RO:0002608 CL:0000236 ! process has causal agent B cell +relationship: RO:0002608 CL:0000236 ! process has causal agent B cell [Term] id: GO:0002369 @@ -38169,8 +38240,8 @@ synonym: "T-lymphocyte cytokine production" EXACT [] is_a: GO:0002367 ! cytokine production involved in immune response is_a: GO:0002456 ! T cell mediated immunity intersection_of: GO:0001816 ! cytokine production -intersection_of: process_has_causal_agent CL:0000084 ! T cell -relationship: process_has_causal_agent CL:0000084 ! T cell +intersection_of: RO:0002608 CL:0000084 ! process has causal agent T cell +relationship: RO:0002608 CL:0000084 ! process has causal agent T cell [Term] id: GO:0002370 @@ -38183,8 +38254,8 @@ synonym: "NK cell cytokine production" EXACT [] is_a: GO:0002228 ! natural killer cell mediated immunity is_a: GO:0002367 ! cytokine production involved in immune response intersection_of: GO:0001816 ! cytokine production -intersection_of: process_has_causal_agent CL:0000623 ! natural killer cell -relationship: process_has_causal_agent CL:0000623 ! natural killer cell +intersection_of: RO:0002608 CL:0000623 ! process has causal agent natural killer cell +relationship: RO:0002608 CL:0000623 ! process has causal agent natural killer cell [Term] id: GO:0002371 @@ -38196,8 +38267,8 @@ subset: gocheck_do_not_annotate is_a: GO:0002367 ! cytokine production involved in immune response is_a: GO:0002443 ! leukocyte mediated immunity intersection_of: GO:0001816 ! cytokine production -intersection_of: process_has_causal_agent CL:0000451 ! dendritic cell -relationship: process_has_causal_agent CL:0000451 ! dendritic cell +intersection_of: RO:0002608 CL:0000451 ! process has causal agent dendritic cell +relationship: RO:0002608 CL:0000451 ! process has causal agent dendritic cell [Term] id: GO:0002372 @@ -38210,8 +38281,8 @@ is_a: GO:0002371 ! dendritic cell cytokine production is_a: GO:0002444 ! myeloid leukocyte mediated immunity is_a: GO:0061082 ! myeloid leukocyte cytokine production intersection_of: GO:0001816 ! cytokine production -intersection_of: process_has_causal_agent CL:0000782 ! myeloid dendritic cell -relationship: process_has_causal_agent CL:0000782 ! myeloid dendritic cell +intersection_of: RO:0002608 CL:0000782 ! process has causal agent myeloid dendritic cell +relationship: RO:0002608 CL:0000782 ! process has causal agent myeloid dendritic cell [Term] id: GO:0002376 @@ -38272,10 +38343,10 @@ namespace: biological_process def: "An immune response taking place in the liver." [GO_REF:0000022, GOC:jal, ISBN:0781735149] is_a: GO:0002251 ! organ or tissue specific immune response intersection_of: GO:0006955 ! immune response -intersection_of: occurs_in UBERON:0002107 ! liver +intersection_of: BFO:0000066 UBERON:0002107 ! occurs in liver +relationship: BFO:0000066 UBERON:0002107 ! occurs in liver relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: occurs_in UBERON:0002107 ! liver -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata [Term] id: GO:0002385 @@ -38297,8 +38368,8 @@ def: "Immune response taking place in the gut-associated lymphoid tissue (GALT). synonym: "immune response in GALT" EXACT [] is_a: GO:0006955 ! immune response intersection_of: GO:0006955 ! immune response -intersection_of: occurs_in UBERON:0001962 ! gut-associated lymphoid tissue -relationship: occurs_in UBERON:0001962 ! gut-associated lymphoid tissue +intersection_of: BFO:0000066 UBERON:0001962 ! occurs in gut-associated lymphoid tissue +relationship: BFO:0000066 UBERON:0001962 ! occurs in gut-associated lymphoid tissue [Term] id: GO:0002388 @@ -38307,10 +38378,10 @@ namespace: biological_process def: "Immune response taking place in the Peyer's patch, nodular lymphoid structures on the serosal surface of the small intestine." [GOC:jal, ISBN:0781735149] is_a: GO:0002387 ! immune response in gut-associated lymphoid tissue intersection_of: GO:0006955 ! immune response -intersection_of: occurs_in UBERON:0001211 ! Peyer's patch +intersection_of: BFO:0000066 UBERON:0001211 ! occurs in Peyer's patch +relationship: BFO:0000066 UBERON:0001211 ! occurs in Peyer's patch relationship: in_taxon NCBITaxon:32524 {all_only="true"} ! Amniota -relationship: occurs_in UBERON:0001211 ! Peyer's patch -relationship: only_in_taxon NCBITaxon:32524 ! Amniota +relationship: RO:0002160 NCBITaxon:32524 ! only in taxon Amniota [Term] id: GO:0002395 @@ -38320,8 +38391,8 @@ def: "An immune response taking place in the nasopharyngeal-associated lymphoid synonym: "immune response in NALT" EXACT [] is_a: GO:0002387 ! immune response in gut-associated lymphoid tissue intersection_of: GO:0006955 ! immune response -intersection_of: occurs_in UBERON:0012330 ! nasal-associated lymphoid tissue -relationship: occurs_in UBERON:0012330 ! nasal-associated lymphoid tissue +intersection_of: BFO:0000066 UBERON:0012330 ! occurs in nasal-associated lymphoid tissue +relationship: BFO:0000066 UBERON:0012330 ! occurs in nasal-associated lymphoid tissue [Term] id: GO:0002396 @@ -38330,8 +38401,8 @@ namespace: biological_process def: "The aggregation, arrangement and bonding together of a set of components to form an MHC protein complex." [GOC:add, ISBN:0781735149, PMID:15771591, PMID:15928678] is_a: GO:0065003 ! protein-containing complex assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0042611 ! MHC protein complex -relationship: results_in_assembly_of GO:0042611 ! MHC protein complex +intersection_of: RO:0002588 GO:0042611 ! results in assembly of MHC protein complex +relationship: RO:0002588 GO:0042611 ! results in assembly of MHC protein complex [Term] id: GO:0002399 @@ -38340,8 +38411,8 @@ namespace: biological_process def: "The aggregation, arrangement and bonding together of a set of components to form an MHC class II protein complex." [GOC:add, ISBN:0781735149, PMID:15771591] is_a: GO:0002396 ! MHC protein complex assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0042613 ! MHC class II protein complex -relationship: results_in_assembly_of GO:0042613 ! MHC class II protein complex +intersection_of: RO:0002588 GO:0042613 ! results in assembly of MHC class II protein complex +relationship: RO:0002588 GO:0042613 ! results in assembly of MHC class II protein complex [Term] id: GO:0002407 @@ -38351,8 +38422,8 @@ def: "The movement of a dendritic cell in response to an external stimulus." [CL is_a: GO:0030595 ! leukocyte chemotaxis is_a: GO:0036336 ! dendritic cell migration intersection_of: GO:0006935 ! chemotaxis -intersection_of: results_in_movement_of CL:0000451 ! dendritic cell -relationship: results_in_movement_of CL:0000451 ! dendritic cell +intersection_of: RO:0002565 CL:0000451 ! results in movement of dendritic cell +relationship: RO:0002565 CL:0000451 ! results in movement of dendritic cell [Term] id: GO:0002408 @@ -38362,8 +38433,8 @@ def: "The movement of a myeloid dendritic cell in response to an external stimul is_a: GO:0002407 ! dendritic cell chemotaxis is_a: GO:0097529 ! myeloid leukocyte migration intersection_of: GO:0006935 ! chemotaxis -intersection_of: results_in_movement_of CL:0000782 ! myeloid dendritic cell -relationship: results_in_movement_of CL:0000782 ! myeloid dendritic cell +intersection_of: RO:0002565 CL:0000782 ! results in movement of myeloid dendritic cell +relationship: RO:0002565 CL:0000782 ! results in movement of myeloid dendritic cell [Term] id: GO:0002409 @@ -38372,8 +38443,8 @@ namespace: biological_process def: "The movement of a Langerhans cell in response to an external stimulus." [GOC:add, PMID:16056255, PMID:16387601] is_a: GO:0002408 ! myeloid dendritic cell chemotaxis intersection_of: GO:0006935 ! chemotaxis -intersection_of: results_in_movement_of CL:0000453 ! Langerhans cell -relationship: results_in_movement_of CL:0000453 ! Langerhans cell +intersection_of: RO:0002565 CL:0000453 ! results in movement of Langerhans cell +relationship: RO:0002565 CL:0000453 ! results in movement of Langerhans cell [Term] id: GO:0002440 @@ -38428,10 +38499,10 @@ synonym: "leucocyte mediated immunity" EXACT [] synonym: "leukocyte immune effector process" EXACT [] is_a: GO:0002252 ! immune effector process intersection_of: GO:0002376 ! immune system process -intersection_of: process_has_causal_agent CL:0000738 ! leukocyte +intersection_of: RO:0002608 CL:0000738 ! process has causal agent leukocyte relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata -relationship: process_has_causal_agent CL:0000738 ! leukocyte +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata +relationship: RO:0002608 CL:0000738 ! process has causal agent leukocyte [Term] id: GO:0002444 @@ -38443,8 +38514,8 @@ synonym: "myeloid leucocyte mediated immunity" EXACT [] synonym: "myeloid leukocyte immune effector process" EXACT [] is_a: GO:0002443 ! leukocyte mediated immunity intersection_of: GO:0002376 ! immune system process -intersection_of: process_has_causal_agent CL:0000766 ! myeloid leukocyte -relationship: process_has_causal_agent CL:0000766 ! myeloid leukocyte +intersection_of: RO:0002608 CL:0000766 ! process has causal agent myeloid leukocyte +relationship: RO:0002608 CL:0000766 ! process has causal agent myeloid leukocyte [Term] id: GO:0002446 @@ -38453,8 +38524,8 @@ namespace: biological_process def: "Any process involved in the carrying out of an immune response by a neutrophil." [GO_REF:0000022, GOC:add, ISBN:0781735149] is_a: GO:0002444 ! myeloid leukocyte mediated immunity intersection_of: GO:0002376 ! immune system process -intersection_of: process_has_causal_agent CL:0000775 ! neutrophil -relationship: process_has_causal_agent CL:0000775 ! neutrophil +intersection_of: RO:0002608 CL:0000775 ! process has causal agent neutrophil +relationship: RO:0002608 CL:0000775 ! process has causal agent neutrophil [Term] id: GO:0002449 @@ -38465,8 +38536,8 @@ synonym: "cell-mediated immunity" BROAD [] synonym: "cellular immune response" BROAD [] is_a: GO:0002443 ! leukocyte mediated immunity intersection_of: GO:0002376 ! immune system process -intersection_of: process_has_causal_agent CL:0000542 ! lymphocyte -relationship: process_has_causal_agent CL:0000542 ! lymphocyte +intersection_of: RO:0002608 CL:0000542 ! process has causal agent lymphocyte +relationship: RO:0002608 CL:0000542 ! process has causal agent lymphocyte [Term] id: GO:0002450 @@ -38478,8 +38549,8 @@ synonym: "B-cell antigen processing and presentation" EXACT [] synonym: "B-lymphocyte antigen processing and presentation" EXACT [] is_a: GO:0019882 ! antigen processing and presentation intersection_of: GO:0019882 ! antigen processing and presentation -intersection_of: occurs_in CL:0000236 ! B cell -relationship: occurs_in CL:0000236 ! B cell +intersection_of: BFO:0000066 CL:0000236 ! occurs in B cell +relationship: BFO:0000066 CL:0000236 ! occurs in B cell relationship: part_of GO:0019724 ! B cell mediated immunity [Term] @@ -38495,8 +38566,8 @@ synonym: "T-lymphocyte mediated immunity" EXACT [] is_a: GO:0002449 ! lymphocyte mediated immunity is_a: GO:0002460 ! adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains intersection_of: GO:0002376 ! immune system process -intersection_of: process_has_causal_agent CL:0000084 ! T cell -relationship: process_has_causal_agent CL:0000084 ! T cell +intersection_of: RO:0002608 CL:0000084 ! process has causal agent T cell +relationship: RO:0002608 CL:0000084 ! process has causal agent T cell [Term] id: GO:0002457 @@ -38508,8 +38579,8 @@ synonym: "T-cell antigen processing and presentation" EXACT [] synonym: "T-lymphocyte antigen processing and presentation" EXACT [] is_a: GO:0019882 ! antigen processing and presentation intersection_of: GO:0019882 ! antigen processing and presentation -intersection_of: occurs_in CL:0000084 ! T cell -relationship: occurs_in CL:0000084 ! T cell +intersection_of: BFO:0000066 CL:0000084 ! occurs in T cell +relationship: BFO:0000066 CL:0000084 ! occurs in T cell relationship: part_of GO:0002456 ! T cell mediated immunity [Term] @@ -38527,8 +38598,8 @@ def: "The process in which germinal centers form. A germinal center is a special is_a: GO:0002460 ! adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001745 ! secondary nodular lymphoid tissue -relationship: results_in_formation_of_anatomical_entity UBERON:0001745 ! secondary nodular lymphoid tissue +intersection_of: RO:0002297 UBERON:0001745 ! results in formation of anatomical entity secondary nodular lymphoid tissue +relationship: RO:0002297 UBERON:0001745 ! results in formation of anatomical entity secondary nodular lymphoid tissue [Term] id: GO:0002468 @@ -38537,8 +38608,8 @@ namespace: biological_process def: "The process in which a dendritic cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex." [GOC:add, ISBN:0781735149, PMID:15771591] is_a: GO:0019882 ! antigen processing and presentation intersection_of: GO:0019882 ! antigen processing and presentation -intersection_of: occurs_in CL:0000451 ! dendritic cell -relationship: occurs_in CL:0000451 ! dendritic cell +intersection_of: BFO:0000066 CL:0000451 ! occurs in dendritic cell +relationship: BFO:0000066 CL:0000451 ! occurs in dendritic cell [Term] id: GO:0002469 @@ -38547,8 +38618,8 @@ namespace: biological_process def: "The process in which a myeloid dendritic cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex." [GOC:add, ISBN:0781735149, PMID:15771591] is_a: GO:0002468 ! dendritic cell antigen processing and presentation intersection_of: GO:0019882 ! antigen processing and presentation -intersection_of: occurs_in CL:0000782 ! myeloid dendritic cell -relationship: occurs_in CL:0000782 ! myeloid dendritic cell +intersection_of: BFO:0000066 CL:0000782 ! occurs in myeloid dendritic cell +relationship: BFO:0000066 CL:0000782 ! occurs in myeloid dendritic cell [Term] id: GO:0002471 @@ -38557,8 +38628,8 @@ namespace: biological_process def: "The process in which a monocyte expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex." [GOC:add, PMID:11200054] is_a: GO:0019882 ! antigen processing and presentation intersection_of: GO:0019882 ! antigen processing and presentation -intersection_of: occurs_in CL:0000576 ! monocyte -relationship: occurs_in CL:0000576 ! monocyte +intersection_of: BFO:0000066 CL:0000576 ! occurs in monocyte +relationship: BFO:0000066 CL:0000576 ! occurs in monocyte [Term] id: GO:0002472 @@ -38567,8 +38638,8 @@ namespace: biological_process def: "The process in which a macrophage expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex." [GOC:add, ISBN:0781735149, PMID:15771591] is_a: GO:0019882 ! antigen processing and presentation intersection_of: GO:0019882 ! antigen processing and presentation -intersection_of: occurs_in CL:0000235 ! macrophage -relationship: occurs_in CL:0000235 ! macrophage +intersection_of: BFO:0000066 CL:0000235 ! occurs in macrophage +relationship: BFO:0000066 CL:0000235 ! occurs in macrophage [Term] id: GO:0002495 @@ -38597,8 +38668,8 @@ def: "The hydrolysis of a peptide bond or bonds within a protein by lysosomal re synonym: "lysosomal proteolysis associated with antigen processing and presentation" EXACT [] is_a: GO:0002496 ! proteolysis associated with antigen processing and presentation intersection_of: GO:0002496 ! proteolysis associated with antigen processing and presentation -intersection_of: occurs_in GO:0005764 ! lysosome -relationship: occurs_in GO:0005764 ! lysosome +intersection_of: BFO:0000066 GO:0005764 ! occurs in lysosome +relationship: BFO:0000066 GO:0005764 ! occurs in lysosome [Term] id: GO:0002504 @@ -38617,8 +38688,8 @@ subset: goslim_drosophila is_a: GO:0002376 ! immune system process is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002405 ! immune system -relationship: results_in_development_of UBERON:0002405 ! immune system +intersection_of: RO:0002296 UBERON:0002405 ! results in development of immune system +relationship: RO:0002296 UBERON:0002405 ! results in development of immune system [Term] id: GO:0002521 @@ -38629,9 +38700,9 @@ synonym: "immune cell differentiation" EXACT [] synonym: "leucocyte differentiation" EXACT [] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000738 ! leukocyte +intersection_of: RO:0002315 CL:0000738 ! results in acquisition of features of leukocyte relationship: part_of GO:0030097 ! hemopoiesis -relationship: results_in_acquisition_of_features_of CL:0000738 ! leukocyte +relationship: RO:0002315 CL:0000738 ! results in acquisition of features of leukocyte [Term] id: GO:0002522 @@ -38697,8 +38768,8 @@ is_a: GO:0030595 ! leukocyte chemotaxis is_a: GO:0071674 ! mononuclear cell migration is_a: GO:0097529 ! myeloid leukocyte migration intersection_of: GO:0006935 ! chemotaxis -intersection_of: results_in_movement_of CL:0000576 ! monocyte -relationship: results_in_movement_of CL:0000576 ! monocyte +intersection_of: RO:0002565 CL:0000576 ! results in movement of monocyte +relationship: RO:0002565 CL:0000576 ! results in movement of monocyte [Term] id: GO:0002554 @@ -38710,9 +38781,9 @@ is_a: GO:0002442 ! serotonin secretion involved in inflammatory response is_a: GO:0051649 ! establishment of localization in cell is_a: GO:0140029 ! exocytic process intersection_of: GO:0001820 ! serotonin secretion -intersection_of: process_has_causal_agent CL:0000233 ! platelet +intersection_of: RO:0002608 CL:0000233 ! process has causal agent platelet relationship: part_of GO:0002576 ! platelet degranulation -relationship: process_has_causal_agent CL:0000233 ! platelet +relationship: RO:0002608 CL:0000233 ! process has causal agent platelet [Term] id: GO:0002555 @@ -38723,9 +38794,9 @@ is_a: GO:0002441 ! histamine secretion involved in inflammatory response is_a: GO:0051649 ! establishment of localization in cell is_a: GO:0140029 ! exocytic process intersection_of: GO:0001821 ! histamine secretion -intersection_of: process_has_causal_agent CL:0000233 ! platelet +intersection_of: RO:0002608 CL:0000233 ! process has causal agent platelet relationship: part_of GO:0002576 ! platelet degranulation -relationship: process_has_causal_agent CL:0000233 ! platelet +relationship: RO:0002608 CL:0000233 ! process has causal agent platelet [Term] id: GO:0002562 @@ -38750,9 +38821,9 @@ def: "The process in which a precursor cell type acquires the specialized featur synonym: "pro-T lymphocyte differentiation" EXACT [] is_a: GO:0002320 ! lymphoid progenitor cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000827 ! pro-T cell +intersection_of: RO:0002315 CL:0000827 ! results in acquisition of features of pro-T cell relationship: part_of GO:0030217 ! T cell differentiation -relationship: results_in_acquisition_of_features_of CL:0000827 ! pro-T cell +relationship: RO:0002315 CL:0000827 ! results in acquisition of features of pro-T cell [Term] id: GO:0002573 @@ -38763,8 +38834,8 @@ synonym: "myeloid leucocyte differentiation" EXACT [] is_a: GO:0002521 ! leukocyte differentiation is_a: GO:0030099 ! myeloid cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000766 ! myeloid leukocyte -relationship: results_in_acquisition_of_features_of CL:0000766 ! myeloid leukocyte +intersection_of: RO:0002315 CL:0000766 ! results in acquisition of features of myeloid leukocyte +relationship: RO:0002315 CL:0000766 ! results in acquisition of features of myeloid leukocyte [Term] id: GO:0002574 @@ -38774,8 +38845,8 @@ def: "The process in which a relatively unspecialized myeloid precursor cell acq comment: Note that platelets are the non-nucleated mammalian functional equivalent of the nucleated thrombocytes of non-mammalian vertebrates and are sometimes also referred to as thrombocytes. Platelet formation in mammals is covered by the biological_process term platelet formation ; GO:0030220. is_a: GO:0030099 ! myeloid cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000762 ! nucleated thrombocyte -relationship: results_in_acquisition_of_features_of CL:0000762 ! nucleated thrombocyte +intersection_of: RO:0002315 CL:0000762 ! results in acquisition of features of nucleated thrombocyte +relationship: RO:0002315 CL:0000762 ! results in acquisition of features of nucleated thrombocyte [Term] id: GO:0002576 @@ -38786,8 +38857,8 @@ synonym: "platelet exocytosis" EXACT [] is_a: GO:0045055 ! regulated exocytosis is_a: GO:0051649 ! establishment of localization in cell intersection_of: GO:0045055 ! regulated exocytosis -intersection_of: occurs_in CL:0000233 ! platelet -relationship: occurs_in CL:0000233 ! platelet +intersection_of: BFO:0000066 CL:0000233 ! occurs in platelet +relationship: BFO:0000066 CL:0000233 ! occurs in platelet [Term] id: GO:0002577 @@ -38796,8 +38867,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of antigen processing and presentation." [GOC:add] is_a: GO:0002682 ! regulation of immune system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0019882 ! antigen processing and presentation -relationship: regulates GO:0019882 ! antigen processing and presentation +intersection_of: RO:0002211 GO:0019882 ! regulates (processual) antigen processing and presentation +relationship: RO:0002211 GO:0019882 ! regulates (processual) antigen processing and presentation [Term] id: GO:0002578 @@ -38811,8 +38882,8 @@ synonym: "inhibition of antigen processing and presentation" NARROW [] is_a: GO:0002577 ! regulation of antigen processing and presentation is_a: GO:0002683 ! negative regulation of immune system process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0019882 ! antigen processing and presentation -relationship: negatively_regulates GO:0019882 ! antigen processing and presentation +intersection_of: RO:0002212 GO:0019882 ! negatively regulates antigen processing and presentation +relationship: RO:0002212 GO:0019882 ! negatively regulates antigen processing and presentation [Term] id: GO:0002579 @@ -38827,8 +38898,8 @@ synonym: "upregulation of antigen processing and presentation" EXACT [] is_a: GO:0002577 ! regulation of antigen processing and presentation is_a: GO:0002684 ! positive regulation of immune system process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0019882 ! antigen processing and presentation -relationship: positively_regulates GO:0019882 ! antigen processing and presentation +intersection_of: RO:0002213 GO:0019882 ! positively regulates antigen processing and presentation +relationship: RO:0002213 GO:0019882 ! positively regulates antigen processing and presentation [Term] id: GO:0002580 @@ -38838,8 +38909,8 @@ def: "Any process that modulates the frequency, rate, or extent of antigen proce synonym: "regulation of peptide or polysaccharide antigen processing and presentation via MHC class II" EXACT [] is_a: GO:0002577 ! regulation of antigen processing and presentation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002504 ! antigen processing and presentation of peptide or polysaccharide antigen via MHC class II -relationship: regulates GO:0002504 ! antigen processing and presentation of peptide or polysaccharide antigen via MHC class II +intersection_of: RO:0002211 GO:0002504 ! regulates (processual) antigen processing and presentation of peptide or polysaccharide antigen via MHC class II +relationship: RO:0002211 GO:0002504 ! regulates (processual) antigen processing and presentation of peptide or polysaccharide antigen via MHC class II [Term] id: GO:0002581 @@ -38854,8 +38925,8 @@ synonym: "negative regulation of peptide or polysaccharide antigen processing an is_a: GO:0002578 ! negative regulation of antigen processing and presentation is_a: GO:0002580 ! regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002504 ! antigen processing and presentation of peptide or polysaccharide antigen via MHC class II -relationship: negatively_regulates GO:0002504 ! antigen processing and presentation of peptide or polysaccharide antigen via MHC class II +intersection_of: RO:0002212 GO:0002504 ! negatively regulates antigen processing and presentation of peptide or polysaccharide antigen via MHC class II +relationship: RO:0002212 GO:0002504 ! negatively regulates antigen processing and presentation of peptide or polysaccharide antigen via MHC class II [Term] id: GO:0002582 @@ -38871,8 +38942,8 @@ synonym: "upregulation of antigen processing and presentation of peptide or poly is_a: GO:0002579 ! positive regulation of antigen processing and presentation is_a: GO:0002580 ! regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002504 ! antigen processing and presentation of peptide or polysaccharide antigen via MHC class II -relationship: positively_regulates GO:0002504 ! antigen processing and presentation of peptide or polysaccharide antigen via MHC class II +intersection_of: RO:0002213 GO:0002504 ! positively regulates antigen processing and presentation of peptide or polysaccharide antigen via MHC class II +relationship: RO:0002213 GO:0002504 ! positively regulates antigen processing and presentation of peptide or polysaccharide antigen via MHC class II [Term] id: GO:0002583 @@ -38882,8 +38953,8 @@ def: "Any process that modulates the frequency, rate, or extent of antigen proce synonym: "regulation of peptide antigen processing and presentation" EXACT [] is_a: GO:0002577 ! regulation of antigen processing and presentation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048002 ! antigen processing and presentation of peptide antigen -relationship: regulates GO:0048002 ! antigen processing and presentation of peptide antigen +intersection_of: RO:0002211 GO:0048002 ! regulates (processual) antigen processing and presentation of peptide antigen +relationship: RO:0002211 GO:0048002 ! regulates (processual) antigen processing and presentation of peptide antigen [Term] id: GO:0002584 @@ -38898,8 +38969,8 @@ synonym: "negative regulation of peptide antigen processing and presentation" EX is_a: GO:0002578 ! negative regulation of antigen processing and presentation is_a: GO:0002583 ! regulation of antigen processing and presentation of peptide antigen intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048002 ! antigen processing and presentation of peptide antigen -relationship: negatively_regulates GO:0048002 ! antigen processing and presentation of peptide antigen +intersection_of: RO:0002212 GO:0048002 ! negatively regulates antigen processing and presentation of peptide antigen +relationship: RO:0002212 GO:0048002 ! negatively regulates antigen processing and presentation of peptide antigen [Term] id: GO:0002585 @@ -38915,8 +38986,8 @@ synonym: "upregulation of antigen processing and presentation of peptide antigen is_a: GO:0002579 ! positive regulation of antigen processing and presentation is_a: GO:0002583 ! regulation of antigen processing and presentation of peptide antigen intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048002 ! antigen processing and presentation of peptide antigen -relationship: positively_regulates GO:0048002 ! antigen processing and presentation of peptide antigen +intersection_of: RO:0002213 GO:0048002 ! positively regulates antigen processing and presentation of peptide antigen +relationship: RO:0002213 GO:0048002 ! positively regulates antigen processing and presentation of peptide antigen [Term] id: GO:0002586 @@ -38927,8 +38998,8 @@ synonym: "regulation of peptide antigen processing and presentation via MHC clas is_a: GO:0002580 ! regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II is_a: GO:0002583 ! regulation of antigen processing and presentation of peptide antigen intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002495 ! antigen processing and presentation of peptide antigen via MHC class II -relationship: regulates GO:0002495 ! antigen processing and presentation of peptide antigen via MHC class II +intersection_of: RO:0002211 GO:0002495 ! regulates (processual) antigen processing and presentation of peptide antigen via MHC class II +relationship: RO:0002211 GO:0002495 ! regulates (processual) antigen processing and presentation of peptide antigen via MHC class II [Term] id: GO:0002587 @@ -38944,8 +39015,8 @@ is_a: GO:0002581 ! negative regulation of antigen processing and presentation of is_a: GO:0002584 ! negative regulation of antigen processing and presentation of peptide antigen is_a: GO:0002586 ! regulation of antigen processing and presentation of peptide antigen via MHC class II intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002495 ! antigen processing and presentation of peptide antigen via MHC class II -relationship: negatively_regulates GO:0002495 ! antigen processing and presentation of peptide antigen via MHC class II +intersection_of: RO:0002212 GO:0002495 ! negatively regulates antigen processing and presentation of peptide antigen via MHC class II +relationship: RO:0002212 GO:0002495 ! negatively regulates antigen processing and presentation of peptide antigen via MHC class II [Term] id: GO:0002588 @@ -38962,8 +39033,8 @@ is_a: GO:0002582 ! positive regulation of antigen processing and presentation of is_a: GO:0002585 ! positive regulation of antigen processing and presentation of peptide antigen is_a: GO:0002586 ! regulation of antigen processing and presentation of peptide antigen via MHC class II intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002495 ! antigen processing and presentation of peptide antigen via MHC class II -relationship: positively_regulates GO:0002495 ! antigen processing and presentation of peptide antigen via MHC class II +intersection_of: RO:0002213 GO:0002495 ! positively regulates antigen processing and presentation of peptide antigen via MHC class II +relationship: RO:0002213 GO:0002495 ! positively regulates antigen processing and presentation of peptide antigen via MHC class II [Term] id: GO:0002604 @@ -38972,8 +39043,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of dendritic cell antigen processing and presentation." [GOC:add] is_a: GO:0002577 ! regulation of antigen processing and presentation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002468 ! dendritic cell antigen processing and presentation -relationship: regulates GO:0002468 ! dendritic cell antigen processing and presentation +intersection_of: RO:0002211 GO:0002468 ! regulates (processual) dendritic cell antigen processing and presentation +relationship: RO:0002211 GO:0002468 ! regulates (processual) dendritic cell antigen processing and presentation [Term] id: GO:0002605 @@ -38987,8 +39058,8 @@ synonym: "inhibition of dendritic cell antigen processing and presentation" NARR is_a: GO:0002578 ! negative regulation of antigen processing and presentation is_a: GO:0002604 ! regulation of dendritic cell antigen processing and presentation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002468 ! dendritic cell antigen processing and presentation -relationship: negatively_regulates GO:0002468 ! dendritic cell antigen processing and presentation +intersection_of: RO:0002212 GO:0002468 ! negatively regulates dendritic cell antigen processing and presentation +relationship: RO:0002212 GO:0002468 ! negatively regulates dendritic cell antigen processing and presentation [Term] id: GO:0002606 @@ -39003,8 +39074,8 @@ synonym: "upregulation of dendritic cell antigen processing and presentation" EX is_a: GO:0002579 ! positive regulation of antigen processing and presentation is_a: GO:0002604 ! regulation of dendritic cell antigen processing and presentation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002468 ! dendritic cell antigen processing and presentation -relationship: positively_regulates GO:0002468 ! dendritic cell antigen processing and presentation +intersection_of: RO:0002213 GO:0002468 ! positively regulates dendritic cell antigen processing and presentation +relationship: RO:0002213 GO:0002468 ! positively regulates dendritic cell antigen processing and presentation [Term] id: GO:0002607 @@ -39013,8 +39084,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of myeloid dendritic cell antigen processing and presentation." [GOC:add] is_a: GO:0002604 ! regulation of dendritic cell antigen processing and presentation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002469 ! myeloid dendritic cell antigen processing and presentation -relationship: regulates GO:0002469 ! myeloid dendritic cell antigen processing and presentation +intersection_of: RO:0002211 GO:0002469 ! regulates (processual) myeloid dendritic cell antigen processing and presentation +relationship: RO:0002211 GO:0002469 ! regulates (processual) myeloid dendritic cell antigen processing and presentation [Term] id: GO:0002608 @@ -39028,8 +39099,8 @@ synonym: "inhibition of myeloid dendritic cell antigen processing and presentati is_a: GO:0002605 ! negative regulation of dendritic cell antigen processing and presentation is_a: GO:0002607 ! regulation of myeloid dendritic cell antigen processing and presentation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002469 ! myeloid dendritic cell antigen processing and presentation -relationship: negatively_regulates GO:0002469 ! myeloid dendritic cell antigen processing and presentation +intersection_of: RO:0002212 GO:0002469 ! negatively regulates myeloid dendritic cell antigen processing and presentation +relationship: RO:0002212 GO:0002469 ! negatively regulates myeloid dendritic cell antigen processing and presentation [Term] id: GO:0002609 @@ -39044,8 +39115,8 @@ synonym: "upregulation of myeloid dendritic cell antigen processing and presenta is_a: GO:0002606 ! positive regulation of dendritic cell antigen processing and presentation is_a: GO:0002607 ! regulation of myeloid dendritic cell antigen processing and presentation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002469 ! myeloid dendritic cell antigen processing and presentation -relationship: positively_regulates GO:0002469 ! myeloid dendritic cell antigen processing and presentation +intersection_of: RO:0002213 GO:0002469 ! positively regulates myeloid dendritic cell antigen processing and presentation +relationship: RO:0002213 GO:0002469 ! positively regulates myeloid dendritic cell antigen processing and presentation [Term] id: GO:0002613 @@ -39054,8 +39125,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of monocyte antigen processing and presentation." [GOC:add] is_a: GO:0002577 ! regulation of antigen processing and presentation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002471 ! monocyte antigen processing and presentation -relationship: regulates GO:0002471 ! monocyte antigen processing and presentation +intersection_of: RO:0002211 GO:0002471 ! regulates (processual) monocyte antigen processing and presentation +relationship: RO:0002211 GO:0002471 ! regulates (processual) monocyte antigen processing and presentation [Term] id: GO:0002614 @@ -39069,8 +39140,8 @@ synonym: "inhibition of monocyte antigen processing and presentation" NARROW [] is_a: GO:0002578 ! negative regulation of antigen processing and presentation is_a: GO:0002613 ! regulation of monocyte antigen processing and presentation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002471 ! monocyte antigen processing and presentation -relationship: negatively_regulates GO:0002471 ! monocyte antigen processing and presentation +intersection_of: RO:0002212 GO:0002471 ! negatively regulates monocyte antigen processing and presentation +relationship: RO:0002212 GO:0002471 ! negatively regulates monocyte antigen processing and presentation [Term] id: GO:0002615 @@ -39085,8 +39156,8 @@ synonym: "upregulation of monocyte antigen processing and presentation" EXACT [] is_a: GO:0002579 ! positive regulation of antigen processing and presentation is_a: GO:0002613 ! regulation of monocyte antigen processing and presentation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002471 ! monocyte antigen processing and presentation -relationship: positively_regulates GO:0002471 ! monocyte antigen processing and presentation +intersection_of: RO:0002213 GO:0002471 ! positively regulates monocyte antigen processing and presentation +relationship: RO:0002213 GO:0002471 ! positively regulates monocyte antigen processing and presentation [Term] id: GO:0002616 @@ -39095,8 +39166,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of macrophage antigen processing and presentation." [GOC:add] is_a: GO:0002577 ! regulation of antigen processing and presentation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002472 ! macrophage antigen processing and presentation -relationship: regulates GO:0002472 ! macrophage antigen processing and presentation +intersection_of: RO:0002211 GO:0002472 ! regulates (processual) macrophage antigen processing and presentation +relationship: RO:0002211 GO:0002472 ! regulates (processual) macrophage antigen processing and presentation [Term] id: GO:0002617 @@ -39110,8 +39181,8 @@ synonym: "inhibition of macrophage antigen processing and presentation" NARROW [ is_a: GO:0002578 ! negative regulation of antigen processing and presentation is_a: GO:0002616 ! regulation of macrophage antigen processing and presentation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002472 ! macrophage antigen processing and presentation -relationship: negatively_regulates GO:0002472 ! macrophage antigen processing and presentation +intersection_of: RO:0002212 GO:0002472 ! negatively regulates macrophage antigen processing and presentation +relationship: RO:0002212 GO:0002472 ! negatively regulates macrophage antigen processing and presentation [Term] id: GO:0002618 @@ -39126,8 +39197,8 @@ synonym: "upregulation of macrophage antigen processing and presentation" EXACT is_a: GO:0002579 ! positive regulation of antigen processing and presentation is_a: GO:0002616 ! regulation of macrophage antigen processing and presentation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002472 ! macrophage antigen processing and presentation -relationship: positively_regulates GO:0002472 ! macrophage antigen processing and presentation +intersection_of: RO:0002213 GO:0002472 ! positively regulates macrophage antigen processing and presentation +relationship: RO:0002213 GO:0002472 ! positively regulates macrophage antigen processing and presentation [Term] id: GO:0002622 @@ -39140,9 +39211,9 @@ synonym: "regulation of B-lymphocyte antigen processing and presentation" EXACT is_a: GO:0002577 ! regulation of antigen processing and presentation is_a: GO:0002712 ! regulation of B cell mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002450 ! B cell antigen processing and presentation -relationship: regulates GO:0002450 ! B cell antigen processing and presentation -relationship: regulates GO:0019724 ! B cell mediated immunity +intersection_of: RO:0002211 GO:0002450 ! regulates (processual) B cell antigen processing and presentation +relationship: RO:0002211 GO:0002450 ! regulates (processual) B cell antigen processing and presentation +relationship: RO:0002211 GO:0019724 ! regulates (processual) B cell mediated immunity [Term] id: GO:0002623 @@ -39160,9 +39231,9 @@ is_a: GO:0002578 ! negative regulation of antigen processing and presentation is_a: GO:0002622 ! regulation of B cell antigen processing and presentation is_a: GO:0002713 ! negative regulation of B cell mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002450 ! B cell antigen processing and presentation -relationship: negatively_regulates GO:0002450 ! B cell antigen processing and presentation -relationship: negatively_regulates GO:0019724 ! B cell mediated immunity +intersection_of: RO:0002212 GO:0002450 ! negatively regulates B cell antigen processing and presentation +relationship: RO:0002212 GO:0002450 ! negatively regulates B cell antigen processing and presentation +relationship: RO:0002212 GO:0019724 ! negatively regulates B cell mediated immunity [Term] id: GO:0002624 @@ -39180,8 +39251,8 @@ synonym: "upregulation of B cell antigen processing and presentation" EXACT [] is_a: GO:0002579 ! positive regulation of antigen processing and presentation is_a: GO:0002622 ! regulation of B cell antigen processing and presentation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002450 ! B cell antigen processing and presentation -relationship: positively_regulates GO:0002450 ! B cell antigen processing and presentation +intersection_of: RO:0002213 GO:0002450 ! positively regulates B cell antigen processing and presentation +relationship: RO:0002213 GO:0002450 ! positively regulates B cell antigen processing and presentation [Term] id: GO:0002625 @@ -39194,9 +39265,9 @@ synonym: "regulation of T-lymphocyte antigen processing and presentation" EXACT is_a: GO:0002577 ! regulation of antigen processing and presentation is_a: GO:0002709 ! regulation of T cell mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002457 ! T cell antigen processing and presentation -relationship: regulates GO:0002456 ! T cell mediated immunity -relationship: regulates GO:0002457 ! T cell antigen processing and presentation +intersection_of: RO:0002211 GO:0002457 ! regulates (processual) T cell antigen processing and presentation +relationship: RO:0002211 GO:0002456 ! regulates (processual) T cell mediated immunity +relationship: RO:0002211 GO:0002457 ! regulates (processual) T cell antigen processing and presentation [Term] id: GO:0002626 @@ -39214,9 +39285,9 @@ is_a: GO:0002578 ! negative regulation of antigen processing and presentation is_a: GO:0002625 ! regulation of T cell antigen processing and presentation is_a: GO:0002710 ! negative regulation of T cell mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002457 ! T cell antigen processing and presentation -relationship: negatively_regulates GO:0002456 ! T cell mediated immunity -relationship: negatively_regulates GO:0002457 ! T cell antigen processing and presentation +intersection_of: RO:0002212 GO:0002457 ! negatively regulates T cell antigen processing and presentation +relationship: RO:0002212 GO:0002456 ! negatively regulates T cell mediated immunity +relationship: RO:0002212 GO:0002457 ! negatively regulates T cell antigen processing and presentation [Term] id: GO:0002627 @@ -39235,9 +39306,9 @@ is_a: GO:0002579 ! positive regulation of antigen processing and presentation is_a: GO:0002625 ! regulation of T cell antigen processing and presentation is_a: GO:0002711 ! positive regulation of T cell mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002457 ! T cell antigen processing and presentation -relationship: positively_regulates GO:0002456 ! T cell mediated immunity -relationship: positively_regulates GO:0002457 ! T cell antigen processing and presentation +intersection_of: RO:0002213 GO:0002457 ! positively regulates T cell antigen processing and presentation +relationship: RO:0002213 GO:0002456 ! positively regulates T cell mediated immunity +relationship: RO:0002213 GO:0002457 ! positively regulates T cell antigen processing and presentation [Term] id: GO:0002628 @@ -39246,8 +39317,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of proteolysis associated with antigen processing and presentation." [GOC:add] is_a: GO:1903050 ! regulation of proteolysis involved in protein catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002496 ! proteolysis associated with antigen processing and presentation -relationship: regulates GO:0002496 ! proteolysis associated with antigen processing and presentation +intersection_of: RO:0002211 GO:0002496 ! regulates (processual) proteolysis associated with antigen processing and presentation +relationship: RO:0002211 GO:0002496 ! regulates (processual) proteolysis associated with antigen processing and presentation [Term] id: GO:0002629 @@ -39260,13 +39331,13 @@ synonym: "downregulation of proteolysis associated with antigen processing and p synonym: "inhibition of proteolysis associated with antigen processing and presentation" NARROW [] is_a: GO:0002584 ! negative regulation of antigen processing and presentation of peptide antigen is_a: GO:0002628 ! regulation of proteolysis associated with antigen processing and presentation -is_a: GO:0031330 ! negative regulation of cellular catabolic process is_a: GO:0042177 ! negative regulation of protein catabolic process is_a: GO:1903051 ! negative regulation of proteolysis involved in protein catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002496 ! proteolysis associated with antigen processing and presentation -relationship: negatively_regulates GO:0002496 ! proteolysis associated with antigen processing and presentation -relationship: negatively_regulates GO:0048002 ! antigen processing and presentation of peptide antigen +intersection_of: RO:0002212 GO:0002496 ! negatively regulates proteolysis associated with antigen processing and presentation +relationship: RO:0002212 GO:0002496 ! negatively regulates proteolysis associated with antigen processing and presentation +relationship: RO:0002212 GO:0048002 ! negatively regulates antigen processing and presentation of peptide antigen +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29024" xsd:anyURI [Term] id: GO:0002630 @@ -39280,13 +39351,12 @@ synonym: "up-regulation of proteolysis associated with antigen processing and pr synonym: "upregulation of proteolysis associated with antigen processing and presentation" EXACT [] is_a: GO:0002585 ! positive regulation of antigen processing and presentation of peptide antigen is_a: GO:0002628 ! regulation of proteolysis associated with antigen processing and presentation -is_a: GO:0031331 ! positive regulation of cellular catabolic process is_a: GO:0045732 ! positive regulation of protein catabolic process is_a: GO:1903052 ! positive regulation of proteolysis involved in protein catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002496 ! proteolysis associated with antigen processing and presentation -relationship: positively_regulates GO:0002496 ! proteolysis associated with antigen processing and presentation -relationship: positively_regulates GO:0048002 ! antigen processing and presentation of peptide antigen +intersection_of: RO:0002213 GO:0002496 ! positively regulates proteolysis associated with antigen processing and presentation +relationship: RO:0002213 GO:0002496 ! positively regulates proteolysis associated with antigen processing and presentation +relationship: RO:0002213 GO:0048002 ! positively regulates antigen processing and presentation of peptide antigen [Term] id: GO:0002634 @@ -39296,9 +39366,9 @@ def: "Any process that modulates the frequency, rate, or extent of germinal cent is_a: GO:0002822 ! regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains is_a: GO:0022603 ! regulation of anatomical structure morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002467 ! germinal center formation -relationship: regulates GO:0002467 ! germinal center formation -relationship: regulates GO:0009653 ! anatomical structure morphogenesis +intersection_of: RO:0002211 GO:0002467 ! regulates (processual) germinal center formation +relationship: RO:0002211 GO:0002467 ! regulates (processual) germinal center formation +relationship: RO:0002211 GO:0009653 ! regulates (processual) anatomical structure morphogenesis [Term] id: GO:0002635 @@ -39313,8 +39383,8 @@ is_a: GO:0002634 ! regulation of germinal center formation is_a: GO:0002823 ! negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains is_a: GO:0051093 ! negative regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002467 ! germinal center formation -relationship: negatively_regulates GO:0002467 ! germinal center formation +intersection_of: RO:0002212 GO:0002467 ! negatively regulates germinal center formation +relationship: RO:0002212 GO:0002467 ! negatively regulates germinal center formation [Term] id: GO:0002636 @@ -39330,8 +39400,8 @@ is_a: GO:0002634 ! regulation of germinal center formation is_a: GO:0002824 ! positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains is_a: GO:0051094 ! positive regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002467 ! germinal center formation -relationship: positively_regulates GO:0002467 ! germinal center formation +intersection_of: RO:0002213 GO:0002467 ! positively regulates germinal center formation +relationship: RO:0002213 GO:0002467 ! positively regulates germinal center formation [Term] id: GO:0002637 @@ -39345,8 +39415,8 @@ synonym: "regulation of immunoglobulin biosynthetic process" NARROW [] synonym: "regulation of immunoglobulin secretion" NARROW [] is_a: GO:0002700 ! regulation of production of molecular mediator of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002377 ! immunoglobulin production -relationship: regulates GO:0002377 ! immunoglobulin production +intersection_of: RO:0002211 GO:0002377 ! regulates (processual) immunoglobulin production +relationship: RO:0002211 GO:0002377 ! regulates (processual) immunoglobulin production [Term] id: GO:0002638 @@ -39364,8 +39434,8 @@ synonym: "negative regulation of immunoglobulin secretion" NARROW [] is_a: GO:0002637 ! regulation of immunoglobulin production is_a: GO:0002701 ! negative regulation of production of molecular mediator of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002377 ! immunoglobulin production -relationship: negatively_regulates GO:0002377 ! immunoglobulin production +intersection_of: RO:0002212 GO:0002377 ! negatively regulates immunoglobulin production +relationship: RO:0002212 GO:0002377 ! negatively regulates immunoglobulin production [Term] id: GO:0002639 @@ -39384,8 +39454,8 @@ synonym: "upregulation of immunoglobulin production" EXACT [] is_a: GO:0002637 ! regulation of immunoglobulin production is_a: GO:0002702 ! positive regulation of production of molecular mediator of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002377 ! immunoglobulin production -relationship: positively_regulates GO:0002377 ! immunoglobulin production +intersection_of: RO:0002213 GO:0002377 ! positively regulates immunoglobulin production +relationship: RO:0002213 GO:0002377 ! positively regulates immunoglobulin production [Term] id: GO:0002682 @@ -39394,8 +39464,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of an immune system process." [GOC:add] is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002376 ! immune system process -relationship: regulates GO:0002376 ! immune system process +intersection_of: RO:0002211 GO:0002376 ! regulates (processual) immune system process +relationship: RO:0002211 GO:0002376 ! regulates (processual) immune system process [Term] id: GO:0002683 @@ -39409,8 +39479,8 @@ synonym: "inhibition of immune system process" NARROW [] is_a: GO:0002682 ! regulation of immune system process is_a: GO:0048519 ! negative regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002376 ! immune system process -relationship: negatively_regulates GO:0002376 ! immune system process +intersection_of: RO:0002212 GO:0002376 ! negatively regulates immune system process +relationship: RO:0002212 GO:0002376 ! negatively regulates immune system process [Term] id: GO:0002684 @@ -39425,8 +39495,8 @@ synonym: "upregulation of immune system process" EXACT [] is_a: GO:0002682 ! regulation of immune system process is_a: GO:0048518 ! positive regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002376 ! immune system process -relationship: positively_regulates GO:0002376 ! immune system process +intersection_of: RO:0002213 GO:0002376 ! positively regulates immune system process +relationship: RO:0002213 GO:0002376 ! positively regulates immune system process [Term] id: GO:0002685 @@ -39438,8 +39508,8 @@ synonym: "regulation of leucocyte migration" EXACT [] is_a: GO:0002682 ! regulation of immune system process is_a: GO:0030334 ! regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0050900 ! leukocyte migration -relationship: regulates GO:0050900 ! leukocyte migration +intersection_of: RO:0002211 GO:0050900 ! regulates (processual) leukocyte migration +relationship: RO:0002211 GO:0050900 ! regulates (processual) leukocyte migration [Term] id: GO:0002686 @@ -39456,8 +39526,8 @@ is_a: GO:0002683 ! negative regulation of immune system process is_a: GO:0002685 ! regulation of leukocyte migration is_a: GO:0030336 ! negative regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0050900 ! leukocyte migration -relationship: negatively_regulates GO:0050900 ! leukocyte migration +intersection_of: RO:0002212 GO:0050900 ! negatively regulates leukocyte migration +relationship: RO:0002212 GO:0050900 ! negatively regulates leukocyte migration [Term] id: GO:0002687 @@ -39475,8 +39545,8 @@ is_a: GO:0002684 ! positive regulation of immune system process is_a: GO:0002685 ! regulation of leukocyte migration is_a: GO:0030335 ! positive regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0050900 ! leukocyte migration -relationship: positively_regulates GO:0050900 ! leukocyte migration +intersection_of: RO:0002213 GO:0050900 ! positively regulates leukocyte migration +relationship: RO:0002213 GO:0050900 ! positively regulates leukocyte migration [Term] id: GO:0002688 @@ -39488,8 +39558,8 @@ synonym: "regulation of leucocyte chemotaxis" EXACT [] is_a: GO:0002685 ! regulation of leukocyte migration is_a: GO:0050920 ! regulation of chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030595 ! leukocyte chemotaxis -relationship: regulates GO:0030595 ! leukocyte chemotaxis +intersection_of: RO:0002211 GO:0030595 ! regulates (processual) leukocyte chemotaxis +relationship: RO:0002211 GO:0030595 ! regulates (processual) leukocyte chemotaxis [Term] id: GO:0002689 @@ -39506,8 +39576,8 @@ is_a: GO:0002686 ! negative regulation of leukocyte migration is_a: GO:0002688 ! regulation of leukocyte chemotaxis is_a: GO:0050922 ! negative regulation of chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030595 ! leukocyte chemotaxis -relationship: negatively_regulates GO:0030595 ! leukocyte chemotaxis +intersection_of: RO:0002212 GO:0030595 ! negatively regulates leukocyte chemotaxis +relationship: RO:0002212 GO:0030595 ! negatively regulates leukocyte chemotaxis [Term] id: GO:0002690 @@ -39525,8 +39595,8 @@ is_a: GO:0002687 ! positive regulation of leukocyte migration is_a: GO:0002688 ! regulation of leukocyte chemotaxis is_a: GO:0050921 ! positive regulation of chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030595 ! leukocyte chemotaxis -relationship: positively_regulates GO:0030595 ! leukocyte chemotaxis +intersection_of: RO:0002213 GO:0030595 ! positively regulates leukocyte chemotaxis +relationship: RO:0002213 GO:0030595 ! positively regulates leukocyte chemotaxis [Term] id: GO:0002694 @@ -39538,8 +39608,8 @@ synonym: "regulation of leucocyte activation" EXACT [] is_a: GO:0002682 ! regulation of immune system process is_a: GO:0050865 ! regulation of cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0045321 ! leukocyte activation -relationship: regulates GO:0045321 ! leukocyte activation +intersection_of: RO:0002211 GO:0045321 ! regulates (processual) leukocyte activation +relationship: RO:0002211 GO:0045321 ! regulates (processual) leukocyte activation [Term] id: GO:0002695 @@ -39556,8 +39626,8 @@ is_a: GO:0002683 ! negative regulation of immune system process is_a: GO:0002694 ! regulation of leukocyte activation is_a: GO:0050866 ! negative regulation of cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0045321 ! leukocyte activation -relationship: negatively_regulates GO:0045321 ! leukocyte activation +intersection_of: RO:0002212 GO:0045321 ! negatively regulates leukocyte activation +relationship: RO:0002212 GO:0045321 ! negatively regulates leukocyte activation [Term] id: GO:0002696 @@ -39575,8 +39645,8 @@ is_a: GO:0002684 ! positive regulation of immune system process is_a: GO:0002694 ! regulation of leukocyte activation is_a: GO:0050867 ! positive regulation of cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0045321 ! leukocyte activation -relationship: positively_regulates GO:0045321 ! leukocyte activation +intersection_of: RO:0002213 GO:0045321 ! positively regulates leukocyte activation +relationship: RO:0002213 GO:0045321 ! positively regulates leukocyte activation [Term] id: GO:0002697 @@ -39585,8 +39655,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of an immune effector process." [GOC:add] is_a: GO:0002682 ! regulation of immune system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002252 ! immune effector process -relationship: regulates GO:0002252 ! immune effector process +intersection_of: RO:0002211 GO:0002252 ! regulates (processual) immune effector process +relationship: RO:0002211 GO:0002252 ! regulates (processual) immune effector process [Term] id: GO:0002698 @@ -39600,8 +39670,8 @@ synonym: "inhibition of immune effector process" NARROW [] is_a: GO:0002683 ! negative regulation of immune system process is_a: GO:0002697 ! regulation of immune effector process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002252 ! immune effector process -relationship: negatively_regulates GO:0002252 ! immune effector process +intersection_of: RO:0002212 GO:0002252 ! negatively regulates immune effector process +relationship: RO:0002212 GO:0002252 ! negatively regulates immune effector process [Term] id: GO:0002699 @@ -39616,8 +39686,8 @@ synonym: "upregulation of immune effector process" EXACT [] is_a: GO:0002684 ! positive regulation of immune system process is_a: GO:0002697 ! regulation of immune effector process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002252 ! immune effector process -relationship: positively_regulates GO:0002252 ! immune effector process +intersection_of: RO:0002213 GO:0002252 ! positively regulates immune effector process +relationship: RO:0002213 GO:0002252 ! positively regulates immune effector process [Term] id: GO:0002700 @@ -39627,8 +39697,8 @@ def: "Any process that modulates the frequency, rate, or extent of the productio is_a: GO:0002697 ! regulation of immune effector process is_a: GO:0010468 ! regulation of gene expression intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002440 ! production of molecular mediator of immune response -relationship: regulates GO:0002440 ! production of molecular mediator of immune response +intersection_of: RO:0002211 GO:0002440 ! regulates (processual) production of molecular mediator of immune response +relationship: RO:0002211 GO:0002440 ! regulates (processual) production of molecular mediator of immune response [Term] id: GO:0002701 @@ -39643,8 +39713,8 @@ is_a: GO:0002698 ! negative regulation of immune effector process is_a: GO:0002700 ! regulation of production of molecular mediator of immune response is_a: GO:0010629 ! negative regulation of gene expression intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002440 ! production of molecular mediator of immune response -relationship: negatively_regulates GO:0002440 ! production of molecular mediator of immune response +intersection_of: RO:0002212 GO:0002440 ! negatively regulates production of molecular mediator of immune response +relationship: RO:0002212 GO:0002440 ! negatively regulates production of molecular mediator of immune response [Term] id: GO:0002702 @@ -39660,8 +39730,8 @@ is_a: GO:0002699 ! positive regulation of immune effector process is_a: GO:0002700 ! regulation of production of molecular mediator of immune response is_a: GO:0010628 ! positive regulation of gene expression intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002440 ! production of molecular mediator of immune response -relationship: positively_regulates GO:0002440 ! production of molecular mediator of immune response +intersection_of: RO:0002213 GO:0002440 ! positively regulates production of molecular mediator of immune response +relationship: RO:0002213 GO:0002440 ! positively regulates production of molecular mediator of immune response [Term] id: GO:0002703 @@ -39672,8 +39742,8 @@ synonym: "regulation of immune cell mediated immunity" EXACT [] synonym: "regulation of leucocyte mediated immunity" EXACT [] is_a: GO:0002697 ! regulation of immune effector process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002443 ! leukocyte mediated immunity -relationship: regulates GO:0002443 ! leukocyte mediated immunity +intersection_of: RO:0002211 GO:0002443 ! regulates (processual) leukocyte mediated immunity +relationship: RO:0002211 GO:0002443 ! regulates (processual) leukocyte mediated immunity [Term] id: GO:0002704 @@ -39689,8 +39759,8 @@ synonym: "negative regulation of leucocyte mediated immunity" EXACT [] is_a: GO:0002698 ! negative regulation of immune effector process is_a: GO:0002703 ! regulation of leukocyte mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002443 ! leukocyte mediated immunity -relationship: negatively_regulates GO:0002443 ! leukocyte mediated immunity +intersection_of: RO:0002212 GO:0002443 ! negatively regulates leukocyte mediated immunity +relationship: RO:0002212 GO:0002443 ! negatively regulates leukocyte mediated immunity [Term] id: GO:0002705 @@ -39707,8 +39777,8 @@ synonym: "upregulation of leukocyte mediated immunity" EXACT [] is_a: GO:0002699 ! positive regulation of immune effector process is_a: GO:0002703 ! regulation of leukocyte mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002443 ! leukocyte mediated immunity -relationship: positively_regulates GO:0002443 ! leukocyte mediated immunity +intersection_of: RO:0002213 GO:0002443 ! positively regulates leukocyte mediated immunity +relationship: RO:0002213 GO:0002443 ! positively regulates leukocyte mediated immunity [Term] id: GO:0002706 @@ -39717,8 +39787,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of lymphocyte mediated immunity." [GOC:add] is_a: GO:0002703 ! regulation of leukocyte mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002449 ! lymphocyte mediated immunity -relationship: regulates GO:0002449 ! lymphocyte mediated immunity +intersection_of: RO:0002211 GO:0002449 ! regulates (processual) lymphocyte mediated immunity +relationship: RO:0002211 GO:0002449 ! regulates (processual) lymphocyte mediated immunity [Term] id: GO:0002707 @@ -39732,8 +39802,8 @@ synonym: "inhibition of lymphocyte mediated immunity" NARROW [] is_a: GO:0002704 ! negative regulation of leukocyte mediated immunity is_a: GO:0002706 ! regulation of lymphocyte mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002449 ! lymphocyte mediated immunity -relationship: negatively_regulates GO:0002449 ! lymphocyte mediated immunity +intersection_of: RO:0002212 GO:0002449 ! negatively regulates lymphocyte mediated immunity +relationship: RO:0002212 GO:0002449 ! negatively regulates lymphocyte mediated immunity [Term] id: GO:0002708 @@ -39748,8 +39818,8 @@ synonym: "upregulation of lymphocyte mediated immunity" EXACT [] is_a: GO:0002705 ! positive regulation of leukocyte mediated immunity is_a: GO:0002706 ! regulation of lymphocyte mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002449 ! lymphocyte mediated immunity -relationship: positively_regulates GO:0002449 ! lymphocyte mediated immunity +intersection_of: RO:0002213 GO:0002449 ! positively regulates lymphocyte mediated immunity +relationship: RO:0002213 GO:0002449 ! positively regulates lymphocyte mediated immunity [Term] id: GO:0002709 @@ -39762,8 +39832,8 @@ synonym: "regulation of T-lymphocyte mediated immunity" EXACT [] is_a: GO:0002706 ! regulation of lymphocyte mediated immunity is_a: GO:0002822 ! regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002456 ! T cell mediated immunity -relationship: regulates GO:0002456 ! T cell mediated immunity +intersection_of: RO:0002211 GO:0002456 ! regulates (processual) T cell mediated immunity +relationship: RO:0002211 GO:0002456 ! regulates (processual) T cell mediated immunity [Term] id: GO:0002710 @@ -39781,8 +39851,8 @@ is_a: GO:0002707 ! negative regulation of lymphocyte mediated immunity is_a: GO:0002709 ! regulation of T cell mediated immunity is_a: GO:0002823 ! negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002456 ! T cell mediated immunity -relationship: negatively_regulates GO:0002456 ! T cell mediated immunity +intersection_of: RO:0002212 GO:0002456 ! negatively regulates T cell mediated immunity +relationship: RO:0002212 GO:0002456 ! negatively regulates T cell mediated immunity [Term] id: GO:0002711 @@ -39801,8 +39871,8 @@ is_a: GO:0002708 ! positive regulation of lymphocyte mediated immunity is_a: GO:0002709 ! regulation of T cell mediated immunity is_a: GO:0002824 ! positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002456 ! T cell mediated immunity -relationship: positively_regulates GO:0002456 ! T cell mediated immunity +intersection_of: RO:0002213 GO:0002456 ! positively regulates T cell mediated immunity +relationship: RO:0002213 GO:0002456 ! positively regulates T cell mediated immunity [Term] id: GO:0002712 @@ -39815,8 +39885,8 @@ synonym: "regulation of B-lymphocyte mediated immunity" EXACT [] is_a: GO:0002706 ! regulation of lymphocyte mediated immunity is_a: GO:0002822 ! regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0019724 ! B cell mediated immunity -relationship: regulates GO:0019724 ! B cell mediated immunity +intersection_of: RO:0002211 GO:0019724 ! regulates (processual) B cell mediated immunity +relationship: RO:0002211 GO:0019724 ! regulates (processual) B cell mediated immunity [Term] id: GO:0002713 @@ -39834,8 +39904,8 @@ is_a: GO:0002707 ! negative regulation of lymphocyte mediated immunity is_a: GO:0002712 ! regulation of B cell mediated immunity is_a: GO:0002823 ! negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0019724 ! B cell mediated immunity -relationship: negatively_regulates GO:0019724 ! B cell mediated immunity +intersection_of: RO:0002212 GO:0019724 ! negatively regulates B cell mediated immunity +relationship: RO:0002212 GO:0019724 ! negatively regulates B cell mediated immunity [Term] id: GO:0002714 @@ -39854,8 +39924,8 @@ is_a: GO:0002708 ! positive regulation of lymphocyte mediated immunity is_a: GO:0002712 ! regulation of B cell mediated immunity is_a: GO:0002824 ! positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0019724 ! B cell mediated immunity -relationship: positively_regulates GO:0019724 ! B cell mediated immunity +intersection_of: RO:0002213 GO:0019724 ! positively regulates B cell mediated immunity +relationship: RO:0002213 GO:0019724 ! positively regulates B cell mediated immunity [Term] id: GO:0002715 @@ -39868,8 +39938,8 @@ synonym: "regulation of NK cell mediated immunity" EXACT [] is_a: GO:0002706 ! regulation of lymphocyte mediated immunity is_a: GO:0045088 ! regulation of innate immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002228 ! natural killer cell mediated immunity -relationship: regulates GO:0002228 ! natural killer cell mediated immunity +intersection_of: RO:0002211 GO:0002228 ! regulates (processual) natural killer cell mediated immunity +relationship: RO:0002211 GO:0002228 ! regulates (processual) natural killer cell mediated immunity [Term] id: GO:0002716 @@ -39888,8 +39958,8 @@ is_a: GO:0002707 ! negative regulation of lymphocyte mediated immunity is_a: GO:0002715 ! regulation of natural killer cell mediated immunity is_a: GO:0045824 ! negative regulation of innate immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002228 ! natural killer cell mediated immunity -relationship: negatively_regulates GO:0002228 ! natural killer cell mediated immunity +intersection_of: RO:0002212 GO:0002228 ! negatively regulates natural killer cell mediated immunity +relationship: RO:0002212 GO:0002228 ! negatively regulates natural killer cell mediated immunity [Term] id: GO:0002717 @@ -39909,8 +39979,8 @@ is_a: GO:0002708 ! positive regulation of lymphocyte mediated immunity is_a: GO:0002715 ! regulation of natural killer cell mediated immunity is_a: GO:0045089 ! positive regulation of innate immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002228 ! natural killer cell mediated immunity -relationship: positively_regulates GO:0002228 ! natural killer cell mediated immunity +intersection_of: RO:0002213 GO:0002228 ! positively regulates natural killer cell mediated immunity +relationship: RO:0002213 GO:0002228 ! positively regulates natural killer cell mediated immunity [Term] id: GO:0002718 @@ -39925,8 +39995,8 @@ synonym: "regulation of cytokine secretion involved in immune response" NARROW [ is_a: GO:0001817 ! regulation of cytokine production is_a: GO:0002700 ! regulation of production of molecular mediator of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002367 ! cytokine production involved in immune response -relationship: regulates GO:0002367 ! cytokine production involved in immune response +intersection_of: RO:0002211 GO:0002367 ! regulates (processual) cytokine production involved in immune response +relationship: RO:0002211 GO:0002367 ! regulates (processual) cytokine production involved in immune response [Term] id: GO:0002719 @@ -39946,8 +40016,8 @@ is_a: GO:0001818 ! negative regulation of cytokine production is_a: GO:0002701 ! negative regulation of production of molecular mediator of immune response is_a: GO:0002718 ! regulation of cytokine production involved in immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002367 ! cytokine production involved in immune response -relationship: negatively_regulates GO:0002367 ! cytokine production involved in immune response +intersection_of: RO:0002212 GO:0002367 ! negatively regulates cytokine production involved in immune response +relationship: RO:0002212 GO:0002367 ! negatively regulates cytokine production involved in immune response [Term] id: GO:0002720 @@ -39968,8 +40038,8 @@ is_a: GO:0001819 ! positive regulation of cytokine production is_a: GO:0002702 ! positive regulation of production of molecular mediator of immune response is_a: GO:0002718 ! regulation of cytokine production involved in immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002367 ! cytokine production involved in immune response -relationship: positively_regulates GO:0002367 ! cytokine production involved in immune response +intersection_of: RO:0002213 GO:0002367 ! positively regulates cytokine production involved in immune response +relationship: RO:0002213 GO:0002367 ! positively regulates cytokine production involved in immune response [Term] id: GO:0002721 @@ -39982,8 +40052,8 @@ synonym: "regulation of B-lymphocyte cytokine production" EXACT [] is_a: GO:0002712 ! regulation of B cell mediated immunity is_a: GO:0002718 ! regulation of cytokine production involved in immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002368 ! B cell cytokine production -relationship: regulates GO:0002368 ! B cell cytokine production +intersection_of: RO:0002211 GO:0002368 ! regulates (processual) B cell cytokine production +relationship: RO:0002211 GO:0002368 ! regulates (processual) B cell cytokine production [Term] id: GO:0002722 @@ -40001,8 +40071,8 @@ is_a: GO:0002713 ! negative regulation of B cell mediated immunity is_a: GO:0002719 ! negative regulation of cytokine production involved in immune response is_a: GO:0002721 ! regulation of B cell cytokine production intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002368 ! B cell cytokine production -relationship: negatively_regulates GO:0002368 ! B cell cytokine production +intersection_of: RO:0002212 GO:0002368 ! negatively regulates B cell cytokine production +relationship: RO:0002212 GO:0002368 ! negatively regulates B cell cytokine production [Term] id: GO:0002723 @@ -40021,8 +40091,8 @@ is_a: GO:0002714 ! positive regulation of B cell mediated immunity is_a: GO:0002720 ! positive regulation of cytokine production involved in immune response is_a: GO:0002721 ! regulation of B cell cytokine production intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002368 ! B cell cytokine production -relationship: positively_regulates GO:0002368 ! B cell cytokine production +intersection_of: RO:0002213 GO:0002368 ! positively regulates B cell cytokine production +relationship: RO:0002213 GO:0002368 ! positively regulates B cell cytokine production [Term] id: GO:0002724 @@ -40035,8 +40105,8 @@ synonym: "regulation of T-lymphocyte cytokine production" EXACT [] is_a: GO:0002709 ! regulation of T cell mediated immunity is_a: GO:0002718 ! regulation of cytokine production involved in immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002369 ! T cell cytokine production -relationship: regulates GO:0002369 ! T cell cytokine production +intersection_of: RO:0002211 GO:0002369 ! regulates (processual) T cell cytokine production +relationship: RO:0002211 GO:0002369 ! regulates (processual) T cell cytokine production [Term] id: GO:0002725 @@ -40054,8 +40124,8 @@ is_a: GO:0002710 ! negative regulation of T cell mediated immunity is_a: GO:0002719 ! negative regulation of cytokine production involved in immune response is_a: GO:0002724 ! regulation of T cell cytokine production intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002369 ! T cell cytokine production -relationship: negatively_regulates GO:0002369 ! T cell cytokine production +intersection_of: RO:0002212 GO:0002369 ! negatively regulates T cell cytokine production +relationship: RO:0002212 GO:0002369 ! negatively regulates T cell cytokine production [Term] id: GO:0002726 @@ -40074,8 +40144,8 @@ is_a: GO:0002711 ! positive regulation of T cell mediated immunity is_a: GO:0002720 ! positive regulation of cytokine production involved in immune response is_a: GO:0002724 ! regulation of T cell cytokine production intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002369 ! T cell cytokine production -relationship: positively_regulates GO:0002369 ! T cell cytokine production +intersection_of: RO:0002213 GO:0002369 ! positively regulates T cell cytokine production +relationship: RO:0002213 GO:0002369 ! positively regulates T cell cytokine production [Term] id: GO:0002727 @@ -40086,8 +40156,8 @@ synonym: "regulation of NK cell cytokine production" EXACT [] is_a: GO:0002715 ! regulation of natural killer cell mediated immunity is_a: GO:0002718 ! regulation of cytokine production involved in immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002370 ! natural killer cell cytokine production -relationship: regulates GO:0002370 ! natural killer cell cytokine production +intersection_of: RO:0002211 GO:0002370 ! regulates (processual) natural killer cell cytokine production +relationship: RO:0002211 GO:0002370 ! regulates (processual) natural killer cell cytokine production [Term] id: GO:0002728 @@ -40103,8 +40173,8 @@ is_a: GO:0002716 ! negative regulation of natural killer cell mediated immunity is_a: GO:0002719 ! negative regulation of cytokine production involved in immune response is_a: GO:0002727 ! regulation of natural killer cell cytokine production intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002370 ! natural killer cell cytokine production -relationship: negatively_regulates GO:0002370 ! natural killer cell cytokine production +intersection_of: RO:0002212 GO:0002370 ! negatively regulates natural killer cell cytokine production +relationship: RO:0002212 GO:0002370 ! negatively regulates natural killer cell cytokine production [Term] id: GO:0002729 @@ -40121,8 +40191,8 @@ is_a: GO:0002717 ! positive regulation of natural killer cell mediated immunity is_a: GO:0002720 ! positive regulation of cytokine production involved in immune response is_a: GO:0002727 ! regulation of natural killer cell cytokine production intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002370 ! natural killer cell cytokine production -relationship: positively_regulates GO:0002370 ! natural killer cell cytokine production +intersection_of: RO:0002213 GO:0002370 ! positively regulates natural killer cell cytokine production +relationship: RO:0002213 GO:0002370 ! positively regulates natural killer cell cytokine production [Term] id: GO:0002730 @@ -40132,8 +40202,8 @@ def: "Any process that modulates the frequency, rate, or extent of dendritic cel is_a: GO:0002703 ! regulation of leukocyte mediated immunity is_a: GO:0002718 ! regulation of cytokine production involved in immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002371 ! dendritic cell cytokine production -relationship: regulates GO:0002371 ! dendritic cell cytokine production +intersection_of: RO:0002211 GO:0002371 ! regulates (processual) dendritic cell cytokine production +relationship: RO:0002211 GO:0002371 ! regulates (processual) dendritic cell cytokine production [Term] id: GO:0002731 @@ -40148,8 +40218,8 @@ is_a: GO:0002704 ! negative regulation of leukocyte mediated immunity is_a: GO:0002719 ! negative regulation of cytokine production involved in immune response is_a: GO:0002730 ! regulation of dendritic cell cytokine production intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002371 ! dendritic cell cytokine production -relationship: negatively_regulates GO:0002371 ! dendritic cell cytokine production +intersection_of: RO:0002212 GO:0002371 ! negatively regulates dendritic cell cytokine production +relationship: RO:0002212 GO:0002371 ! negatively regulates dendritic cell cytokine production [Term] id: GO:0002732 @@ -40165,8 +40235,8 @@ is_a: GO:0002705 ! positive regulation of leukocyte mediated immunity is_a: GO:0002720 ! positive regulation of cytokine production involved in immune response is_a: GO:0002730 ! regulation of dendritic cell cytokine production intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002371 ! dendritic cell cytokine production -relationship: positively_regulates GO:0002371 ! dendritic cell cytokine production +intersection_of: RO:0002213 GO:0002371 ! positively regulates dendritic cell cytokine production +relationship: RO:0002213 GO:0002371 ! positively regulates dendritic cell cytokine production [Term] id: GO:0002733 @@ -40176,8 +40246,8 @@ def: "Any process that modulates the frequency, rate, or extent of myeloid dendr is_a: GO:0002730 ! regulation of dendritic cell cytokine production is_a: GO:0002886 ! regulation of myeloid leukocyte mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002372 ! myeloid dendritic cell cytokine production -relationship: regulates GO:0002372 ! myeloid dendritic cell cytokine production +intersection_of: RO:0002211 GO:0002372 ! regulates (processual) myeloid dendritic cell cytokine production +relationship: RO:0002211 GO:0002372 ! regulates (processual) myeloid dendritic cell cytokine production [Term] id: GO:0002734 @@ -40192,8 +40262,8 @@ is_a: GO:0002731 ! negative regulation of dendritic cell cytokine production is_a: GO:0002733 ! regulation of myeloid dendritic cell cytokine production is_a: GO:0002887 ! negative regulation of myeloid leukocyte mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002372 ! myeloid dendritic cell cytokine production -relationship: negatively_regulates GO:0002372 ! myeloid dendritic cell cytokine production +intersection_of: RO:0002212 GO:0002372 ! negatively regulates myeloid dendritic cell cytokine production +relationship: RO:0002212 GO:0002372 ! negatively regulates myeloid dendritic cell cytokine production [Term] id: GO:0002735 @@ -40210,8 +40280,8 @@ is_a: GO:0002733 ! regulation of myeloid dendritic cell cytokine production is_a: GO:0002888 ! positive regulation of myeloid leukocyte mediated immunity is_a: GO:0061081 ! positive regulation of myeloid leukocyte cytokine production involved in immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002372 ! myeloid dendritic cell cytokine production -relationship: positively_regulates GO:0002372 ! myeloid dendritic cell cytokine production +intersection_of: RO:0002213 GO:0002372 ! positively regulates myeloid dendritic cell cytokine production +relationship: RO:0002213 GO:0002372 ! positively regulates myeloid dendritic cell cytokine production [Term] id: GO:0002759 @@ -40223,8 +40293,8 @@ is_a: GO:0002920 ! regulation of humoral immune response is_a: GO:0031347 ! regulation of defense response is_a: GO:0032101 ! regulation of response to external stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0019730 ! antimicrobial humoral response -relationship: regulates GO:0019730 ! antimicrobial humoral response +intersection_of: RO:0002211 GO:0019730 ! regulates (processual) antimicrobial humoral response +relationship: RO:0002211 GO:0019730 ! regulates (processual) antimicrobial humoral response [Term] id: GO:0002760 @@ -40242,8 +40312,8 @@ is_a: GO:0002922 ! positive regulation of humoral immune response is_a: GO:0031349 ! positive regulation of defense response is_a: GO:0032103 ! positive regulation of response to external stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0019730 ! antimicrobial humoral response -relationship: positively_regulates GO:0019730 ! antimicrobial humoral response +intersection_of: RO:0002213 GO:0019730 ! positively regulates antimicrobial humoral response +relationship: RO:0002213 GO:0019730 ! positively regulates antimicrobial humoral response [Term] id: GO:0002761 @@ -40253,8 +40323,8 @@ def: "Any process that modulates the frequency, rate, or extent of myeloid leuko is_a: GO:0045637 ! regulation of myeloid cell differentiation is_a: GO:1902105 ! regulation of leukocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002573 ! myeloid leukocyte differentiation -relationship: regulates GO:0002573 ! myeloid leukocyte differentiation +intersection_of: RO:0002211 GO:0002573 ! regulates (processual) myeloid leukocyte differentiation +relationship: RO:0002211 GO:0002573 ! regulates (processual) myeloid leukocyte differentiation [Term] id: GO:0002762 @@ -40269,8 +40339,8 @@ is_a: GO:0002761 ! regulation of myeloid leukocyte differentiation is_a: GO:0045638 ! negative regulation of myeloid cell differentiation is_a: GO:1902106 ! negative regulation of leukocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002573 ! myeloid leukocyte differentiation -relationship: negatively_regulates GO:0002573 ! myeloid leukocyte differentiation +intersection_of: RO:0002212 GO:0002573 ! negatively regulates myeloid leukocyte differentiation +relationship: RO:0002212 GO:0002573 ! negatively regulates myeloid leukocyte differentiation [Term] id: GO:0002763 @@ -40286,8 +40356,8 @@ is_a: GO:0002761 ! regulation of myeloid leukocyte differentiation is_a: GO:0045639 ! positive regulation of myeloid cell differentiation is_a: GO:1902107 ! positive regulation of leukocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002573 ! myeloid leukocyte differentiation -relationship: positively_regulates GO:0002573 ! myeloid leukocyte differentiation +intersection_of: RO:0002213 GO:0002573 ! positively regulates myeloid leukocyte differentiation +relationship: RO:0002213 GO:0002573 ! positively regulates myeloid leukocyte differentiation [Term] id: GO:0002775 @@ -40315,9 +40385,9 @@ def: "Any process that modulates the frequency, rate, or extent of antimicrobial is_a: GO:0002700 ! regulation of production of molecular mediator of immune response is_a: GO:0002759 ! regulation of antimicrobial humoral response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002775 ! antimicrobial peptide production -relationship: regulates GO:0002775 ! antimicrobial peptide production -relationship: regulates GO:0019730 ! antimicrobial humoral response +intersection_of: RO:0002211 GO:0002775 ! regulates (processual) antimicrobial peptide production +relationship: RO:0002211 GO:0002775 ! regulates (processual) antimicrobial peptide production +relationship: RO:0002211 GO:0019730 ! regulates (processual) antimicrobial humoral response [Term] id: GO:0002785 @@ -40332,9 +40402,9 @@ is_a: GO:0002701 ! negative regulation of production of molecular mediator of im is_a: GO:0002784 ! regulation of antimicrobial peptide production is_a: GO:0008348 ! negative regulation of antimicrobial humoral response intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002775 ! antimicrobial peptide production -relationship: negatively_regulates GO:0002775 ! antimicrobial peptide production -relationship: negatively_regulates GO:0019730 ! antimicrobial humoral response +intersection_of: RO:0002212 GO:0002775 ! negatively regulates antimicrobial peptide production +relationship: RO:0002212 GO:0002775 ! negatively regulates antimicrobial peptide production +relationship: RO:0002212 GO:0019730 ! negatively regulates antimicrobial humoral response [Term] id: GO:0002790 @@ -40344,8 +40414,8 @@ def: "The controlled release of a peptide from a cell or a tissue." [GOC:add] is_a: GO:0015833 ! peptide transport is_a: GO:0046903 ! secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:60466 ! peptide zwitterion -relationship: has_primary_input CHEBI:60466 ! peptide zwitterion +intersection_of: RO:0004009 CHEBI:60466 ! has primary input peptide zwitterion +relationship: RO:0004009 CHEBI:60466 ! has primary input peptide zwitterion [Term] id: GO:0002791 @@ -40355,8 +40425,8 @@ def: "Any process that modulates the frequency, rate, or extent of peptide secre is_a: GO:0051046 ! regulation of secretion is_a: GO:0090087 ! regulation of peptide transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002790 ! peptide secretion -relationship: regulates GO:0002790 ! peptide secretion +intersection_of: RO:0002211 GO:0002790 ! regulates (processual) peptide secretion +relationship: RO:0002211 GO:0002790 ! regulates (processual) peptide secretion [Term] id: GO:0002792 @@ -40370,8 +40440,8 @@ synonym: "inhibition of peptide secretion" NARROW [] is_a: GO:0002791 ! regulation of peptide secretion is_a: GO:0051048 ! negative regulation of secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002790 ! peptide secretion -relationship: negatively_regulates GO:0002790 ! peptide secretion +intersection_of: RO:0002212 GO:0002790 ! negatively regulates peptide secretion +relationship: RO:0002212 GO:0002790 ! negatively regulates peptide secretion [Term] id: GO:0002793 @@ -40386,8 +40456,8 @@ synonym: "upregulation of peptide secretion" EXACT [] is_a: GO:0002791 ! regulation of peptide secretion is_a: GO:0051047 ! positive regulation of secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002790 ! peptide secretion -relationship: positively_regulates GO:0002790 ! peptide secretion +intersection_of: RO:0002213 GO:0002790 ! positively regulates peptide secretion +relationship: RO:0002213 GO:0002790 ! positively regulates peptide secretion [Term] id: GO:0002794 @@ -40397,9 +40467,9 @@ def: "Any process that modulates the frequency, rate, or extent of antimicrobial is_a: GO:0002784 ! regulation of antimicrobial peptide production is_a: GO:0002791 ! regulation of peptide secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002776 ! antimicrobial peptide secretion -relationship: regulates GO:0002775 ! antimicrobial peptide production -relationship: regulates GO:0002776 ! antimicrobial peptide secretion +intersection_of: RO:0002211 GO:0002776 ! regulates (processual) antimicrobial peptide secretion +relationship: RO:0002211 GO:0002775 ! regulates (processual) antimicrobial peptide production +relationship: RO:0002211 GO:0002776 ! regulates (processual) antimicrobial peptide secretion [Term] id: GO:0002795 @@ -40414,9 +40484,9 @@ is_a: GO:0002785 ! negative regulation of antimicrobial peptide production is_a: GO:0002792 ! negative regulation of peptide secretion is_a: GO:0002794 ! regulation of antimicrobial peptide secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002776 ! antimicrobial peptide secretion -relationship: negatively_regulates GO:0002775 ! antimicrobial peptide production -relationship: negatively_regulates GO:0002776 ! antimicrobial peptide secretion +intersection_of: RO:0002212 GO:0002776 ! negatively regulates antimicrobial peptide secretion +relationship: RO:0002212 GO:0002775 ! negatively regulates antimicrobial peptide production +relationship: RO:0002212 GO:0002776 ! negatively regulates antimicrobial peptide secretion [Term] id: GO:0002796 @@ -40432,9 +40502,9 @@ is_a: GO:0002225 ! positive regulation of antimicrobial peptide production is_a: GO:0002793 ! positive regulation of peptide secretion is_a: GO:0002794 ! regulation of antimicrobial peptide secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002776 ! antimicrobial peptide secretion -relationship: positively_regulates GO:0002775 ! antimicrobial peptide production -relationship: positively_regulates GO:0002776 ! antimicrobial peptide secretion +intersection_of: RO:0002213 GO:0002776 ! positively regulates antimicrobial peptide secretion +relationship: RO:0002213 GO:0002775 ! positively regulates antimicrobial peptide production +relationship: RO:0002213 GO:0002776 ! positively regulates antimicrobial peptide secretion [Term] id: GO:0002819 @@ -40443,8 +40513,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of an adaptive immune response." [GOC:add] is_a: GO:0050776 ! regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002250 ! adaptive immune response -relationship: regulates GO:0002250 ! adaptive immune response +intersection_of: RO:0002211 GO:0002250 ! regulates (processual) adaptive immune response +relationship: RO:0002211 GO:0002250 ! regulates (processual) adaptive immune response [Term] id: GO:0002820 @@ -40458,8 +40528,8 @@ synonym: "inhibition of adaptive immune response" NARROW [] is_a: GO:0002819 ! regulation of adaptive immune response is_a: GO:0050777 ! negative regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002250 ! adaptive immune response -relationship: negatively_regulates GO:0002250 ! adaptive immune response +intersection_of: RO:0002212 GO:0002250 ! negatively regulates adaptive immune response +relationship: RO:0002212 GO:0002250 ! negatively regulates adaptive immune response [Term] id: GO:0002821 @@ -40474,8 +40544,8 @@ synonym: "upregulation of adaptive immune response" EXACT [] is_a: GO:0002819 ! regulation of adaptive immune response is_a: GO:0050778 ! positive regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002250 ! adaptive immune response -relationship: positively_regulates GO:0002250 ! adaptive immune response +intersection_of: RO:0002213 GO:0002250 ! positively regulates adaptive immune response +relationship: RO:0002213 GO:0002250 ! positively regulates adaptive immune response [Term] id: GO:0002822 @@ -40484,10 +40554,10 @@ namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of an adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains. An example of this process is found in the Gnathostomata." [GOC:add, GOC:mtg_sensu] is_a: GO:0002819 ! regulation of adaptive immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002460 ! adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains +intersection_of: RO:0002211 GO:0002460 ! regulates (processual) adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains relationship: in_taxon NCBITaxon:7776 {all_only="true"} ! Gnathostomata -relationship: only_in_taxon NCBITaxon:7776 ! Gnathostomata -relationship: regulates GO:0002460 ! adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains +relationship: RO:0002160 NCBITaxon:7776 ! only in taxon Gnathostomata +relationship: RO:0002211 GO:0002460 ! regulates (processual) adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains [Term] id: GO:0002823 @@ -40497,8 +40567,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate, or exten is_a: GO:0002820 ! negative regulation of adaptive immune response is_a: GO:0002822 ! regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002460 ! adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains -relationship: negatively_regulates GO:0002460 ! adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains +intersection_of: RO:0002212 GO:0002460 ! negatively regulates adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains +relationship: RO:0002212 GO:0002460 ! negatively regulates adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains [Term] id: GO:0002824 @@ -40508,8 +40578,8 @@ def: "Any process that activates or increases the frequency, rate, or extent of is_a: GO:0002821 ! positive regulation of adaptive immune response is_a: GO:0002822 ! regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002460 ! adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains -relationship: positively_regulates GO:0002460 ! adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains +intersection_of: RO:0002213 GO:0002460 ! positively regulates adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains +relationship: RO:0002213 GO:0002460 ! positively regulates adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains [Term] id: GO:0002828 @@ -40520,8 +40590,8 @@ synonym: "regulation of T-helper 2 type immune response" NARROW [GOC:add] synonym: "regulation of Th2 immune response" NARROW [GOC:add] is_a: GO:0050776 ! regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042092 ! type 2 immune response -relationship: regulates GO:0042092 ! type 2 immune response +intersection_of: RO:0002211 GO:0042092 ! regulates (processual) type 2 immune response +relationship: RO:0002211 GO:0042092 ! regulates (processual) type 2 immune response [Term] id: GO:0002829 @@ -40537,8 +40607,8 @@ synonym: "negative regulation of Th2 immune response" NARROW [GOC:add] is_a: GO:0002828 ! regulation of type 2 immune response is_a: GO:0050777 ! negative regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042092 ! type 2 immune response -relationship: negatively_regulates GO:0042092 ! type 2 immune response +intersection_of: RO:0002212 GO:0042092 ! negatively regulates type 2 immune response +relationship: RO:0002212 GO:0042092 ! negatively regulates type 2 immune response [Term] id: GO:0002830 @@ -40555,8 +40625,8 @@ synonym: "upregulation of type 2 immune response" EXACT [] is_a: GO:0002828 ! regulation of type 2 immune response is_a: GO:0050778 ! positive regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042092 ! type 2 immune response -relationship: positively_regulates GO:0042092 ! type 2 immune response +intersection_of: RO:0002213 GO:0042092 ! positively regulates type 2 immune response +relationship: RO:0002213 GO:0042092 ! positively regulates type 2 immune response [Term] id: GO:0002831 @@ -40567,8 +40637,8 @@ comment: Note that this term is in the subset of terms that should not be used f subset: gocheck_do_not_annotate is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009607 ! response to biotic stimulus -relationship: regulates GO:0009607 ! response to biotic stimulus +intersection_of: RO:0002211 GO:0009607 ! regulates (processual) response to biotic stimulus +relationship: RO:0002211 GO:0009607 ! regulates (processual) response to biotic stimulus [Term] id: GO:0002832 @@ -40584,8 +40654,8 @@ synonym: "inhibition of response to biotic stimulus" NARROW [] is_a: GO:0002831 ! regulation of response to biotic stimulus is_a: GO:0048585 ! negative regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009607 ! response to biotic stimulus -relationship: negatively_regulates GO:0009607 ! response to biotic stimulus +intersection_of: RO:0002212 GO:0009607 ! negatively regulates response to biotic stimulus +relationship: RO:0002212 GO:0009607 ! negatively regulates response to biotic stimulus [Term] id: GO:0002833 @@ -40602,8 +40672,8 @@ synonym: "upregulation of response to biotic stimulus" EXACT [] is_a: GO:0002831 ! regulation of response to biotic stimulus is_a: GO:0048584 ! positive regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009607 ! response to biotic stimulus -relationship: positively_regulates GO:0009607 ! response to biotic stimulus +intersection_of: RO:0002213 GO:0009607 ! positively regulates response to biotic stimulus +relationship: RO:0002213 GO:0009607 ! positively regulates response to biotic stimulus [Term] id: GO:0002886 @@ -40612,8 +40682,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of myeloid leukocyte mediated immunity." [GOC:add] is_a: GO:0002703 ! regulation of leukocyte mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002444 ! myeloid leukocyte mediated immunity -relationship: regulates GO:0002444 ! myeloid leukocyte mediated immunity +intersection_of: RO:0002211 GO:0002444 ! regulates (processual) myeloid leukocyte mediated immunity +relationship: RO:0002211 GO:0002444 ! regulates (processual) myeloid leukocyte mediated immunity [Term] id: GO:0002887 @@ -40627,8 +40697,8 @@ synonym: "inhibition of myeloid leukocyte mediated immunity" NARROW [] is_a: GO:0002704 ! negative regulation of leukocyte mediated immunity is_a: GO:0002886 ! regulation of myeloid leukocyte mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002444 ! myeloid leukocyte mediated immunity -relationship: negatively_regulates GO:0002444 ! myeloid leukocyte mediated immunity +intersection_of: RO:0002212 GO:0002444 ! negatively regulates myeloid leukocyte mediated immunity +relationship: RO:0002212 GO:0002444 ! negatively regulates myeloid leukocyte mediated immunity [Term] id: GO:0002888 @@ -40643,8 +40713,8 @@ synonym: "upregulation of myeloid leukocyte mediated immunity" EXACT [] is_a: GO:0002705 ! positive regulation of leukocyte mediated immunity is_a: GO:0002886 ! regulation of myeloid leukocyte mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002444 ! myeloid leukocyte mediated immunity -relationship: positively_regulates GO:0002444 ! myeloid leukocyte mediated immunity +intersection_of: RO:0002213 GO:0002444 ! positively regulates myeloid leukocyte mediated immunity +relationship: RO:0002213 GO:0002444 ! positively regulates myeloid leukocyte mediated immunity [Term] id: GO:0002889 @@ -40653,8 +40723,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of an immunoglobulin mediated immune response." [GOC:add] is_a: GO:0002712 ! regulation of B cell mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0016064 ! immunoglobulin mediated immune response -relationship: regulates GO:0016064 ! immunoglobulin mediated immune response +intersection_of: RO:0002211 GO:0016064 ! regulates (processual) immunoglobulin mediated immune response +relationship: RO:0002211 GO:0016064 ! regulates (processual) immunoglobulin mediated immune response [Term] id: GO:0002890 @@ -40668,8 +40738,8 @@ synonym: "inhibition of immunoglobulin mediated immune response" NARROW [] is_a: GO:0002713 ! negative regulation of B cell mediated immunity is_a: GO:0002889 ! regulation of immunoglobulin mediated immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0016064 ! immunoglobulin mediated immune response -relationship: negatively_regulates GO:0016064 ! immunoglobulin mediated immune response +intersection_of: RO:0002212 GO:0016064 ! negatively regulates immunoglobulin mediated immune response +relationship: RO:0002212 GO:0016064 ! negatively regulates immunoglobulin mediated immune response [Term] id: GO:0002891 @@ -40684,8 +40754,8 @@ synonym: "upregulation of immunoglobulin mediated immune response" EXACT [] is_a: GO:0002714 ! positive regulation of B cell mediated immunity is_a: GO:0002889 ! regulation of immunoglobulin mediated immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0016064 ! immunoglobulin mediated immune response -relationship: positively_regulates GO:0016064 ! immunoglobulin mediated immune response +intersection_of: RO:0002213 GO:0016064 ! positively regulates immunoglobulin mediated immune response +relationship: RO:0002213 GO:0016064 ! positively regulates immunoglobulin mediated immune response [Term] id: GO:0002901 @@ -40714,8 +40784,8 @@ synonym: "programmed cell death, mature B-cells" EXACT [] synonym: "programmed cell death, mature B-lymphocytes" EXACT [] is_a: GO:0001783 ! B cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000785 ! mature B cell -relationship: occurs_in CL:0000785 ! mature B cell +intersection_of: BFO:0000066 CL:0000785 ! occurs in mature B cell +relationship: BFO:0000066 CL:0000785 ! occurs in mature B cell relationship: part_of GO:0001782 ! B cell homeostasis [Term] @@ -40726,8 +40796,8 @@ def: "Any process that modulates the frequency, rate, or extent of B cell apopto synonym: "regulation of B cell apoptosis" NARROW [] is_a: GO:0070228 ! regulation of lymphocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001783 ! B cell apoptotic process -relationship: regulates GO:0001783 ! B cell apoptotic process +intersection_of: RO:0002211 GO:0001783 ! regulates (processual) B cell apoptotic process +relationship: RO:0002211 GO:0001783 ! regulates (processual) B cell apoptotic process [Term] id: GO:0002903 @@ -40742,8 +40812,8 @@ synonym: "negative regulation of B cell apoptosis" NARROW [] is_a: GO:0002902 ! regulation of B cell apoptotic process is_a: GO:0070229 ! negative regulation of lymphocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001783 ! B cell apoptotic process -relationship: negatively_regulates GO:0001783 ! B cell apoptotic process +intersection_of: RO:0002212 GO:0001783 ! negatively regulates B cell apoptotic process +relationship: RO:0002212 GO:0001783 ! negatively regulates B cell apoptotic process [Term] id: GO:0002904 @@ -40759,8 +40829,8 @@ synonym: "upregulation of B cell apoptosis" EXACT [] is_a: GO:0002902 ! regulation of B cell apoptotic process is_a: GO:0070230 ! positive regulation of lymphocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001783 ! B cell apoptotic process -relationship: positively_regulates GO:0001783 ! B cell apoptotic process +intersection_of: RO:0002213 GO:0001783 ! positively regulates B cell apoptotic process +relationship: RO:0002213 GO:0001783 ! positively regulates B cell apoptotic process [Term] id: GO:0002905 @@ -40771,9 +40841,9 @@ synonym: "regulation of mature B cell apoptosis" NARROW [] is_a: GO:0002682 ! regulation of immune system process is_a: GO:0002902 ! regulation of B cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002901 ! mature B cell apoptotic process -relationship: regulates GO:0002376 ! immune system process -relationship: regulates GO:0002901 ! mature B cell apoptotic process +intersection_of: RO:0002211 GO:0002901 ! regulates (processual) mature B cell apoptotic process +relationship: RO:0002211 GO:0002376 ! regulates (processual) immune system process +relationship: RO:0002211 GO:0002901 ! regulates (processual) mature B cell apoptotic process [Term] id: GO:0002906 @@ -40788,8 +40858,8 @@ synonym: "negative regulation of mature B cell apoptosis" NARROW [] is_a: GO:0002903 ! negative regulation of B cell apoptotic process is_a: GO:0002905 ! regulation of mature B cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002901 ! mature B cell apoptotic process -relationship: negatively_regulates GO:0002901 ! mature B cell apoptotic process +intersection_of: RO:0002212 GO:0002901 ! negatively regulates mature B cell apoptotic process +relationship: RO:0002212 GO:0002901 ! negatively regulates mature B cell apoptotic process [Term] id: GO:0002907 @@ -40806,9 +40876,9 @@ is_a: GO:0002684 ! positive regulation of immune system process is_a: GO:0002904 ! positive regulation of B cell apoptotic process is_a: GO:0002905 ! regulation of mature B cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002901 ! mature B cell apoptotic process -relationship: positively_regulates GO:0002376 ! immune system process -relationship: positively_regulates GO:0002901 ! mature B cell apoptotic process +intersection_of: RO:0002213 GO:0002901 ! positively regulates mature B cell apoptotic process +relationship: RO:0002213 GO:0002376 ! positively regulates immune system process +relationship: RO:0002213 GO:0002901 ! positively regulates mature B cell apoptotic process [Term] id: GO:0002920 @@ -40817,8 +40887,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of a humoral immune response." [GOC:add] is_a: GO:0050776 ! regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006959 ! humoral immune response -relationship: regulates GO:0006959 ! humoral immune response +intersection_of: RO:0002211 GO:0006959 ! regulates (processual) humoral immune response +relationship: RO:0002211 GO:0006959 ! regulates (processual) humoral immune response [Term] id: GO:0002921 @@ -40832,8 +40902,8 @@ synonym: "inhibition of humoral immune response" NARROW [] is_a: GO:0002920 ! regulation of humoral immune response is_a: GO:0050777 ! negative regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006959 ! humoral immune response -relationship: negatively_regulates GO:0006959 ! humoral immune response +intersection_of: RO:0002212 GO:0006959 ! negatively regulates humoral immune response +relationship: RO:0002212 GO:0006959 ! negatively regulates humoral immune response [Term] id: GO:0002922 @@ -40848,8 +40918,8 @@ synonym: "upregulation of humoral immune response" EXACT [] is_a: GO:0002920 ! regulation of humoral immune response is_a: GO:0050778 ! positive regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006959 ! humoral immune response -relationship: positively_regulates GO:0006959 ! humoral immune response +intersection_of: RO:0002213 GO:0006959 ! positively regulates humoral immune response +relationship: RO:0002213 GO:0006959 ! positively regulates humoral immune response [Term] id: GO:0002930 @@ -40858,9 +40928,9 @@ namespace: biological_process def: "The progression of the trabecular meshwork over time, from its formation to the mature structure. The trabecular meshwork is a fenestrated endothelial-like tissue situated at the intersection of the cornea and the iris. The trabecular meshwork provides drainage for the aqueous humor." [PMID:20568247] is_a: GO:0009888 ! tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005969 ! eye trabecular meshwork +intersection_of: RO:0002296 UBERON:0005969 ! results in development of eye trabecular meshwork relationship: part_of GO:0043010 ! camera-type eye development -relationship: results_in_development_of UBERON:0005969 ! eye trabecular meshwork +relationship: RO:0002296 UBERON:0005969 ! results in development of eye trabecular meshwork created_by: hjd creation_date: 2012-04-19T04:50:06Z @@ -40871,9 +40941,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a tendon sheath over time, from its formation to the mature structure. A tendon sheath is a layer of membrane around a tendon. It permits the tendon to move." [PMID:20696843] is_a: GO:0061448 ! connective tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000304 ! tendon sheath +intersection_of: RO:0002296 UBERON:0000304 ! results in development of tendon sheath relationship: part_of GO:0035989 ! tendon development -relationship: results_in_development_of UBERON:0000304 ! tendon sheath +relationship: RO:0002296 UBERON:0000304 ! results in development of tendon sheath created_by: hjd creation_date: 2012-04-23T02:11:22Z @@ -40884,8 +40954,8 @@ namespace: biological_process def: "The multiplication or reproduction of type B synoviocytes by cell division, resulting in the expansion of their population. A type B synoviocyte is a fibroblast-like cell found in synovial tissues." [PMID:10770586, PMID:9546370] is_a: GO:0050673 ! epithelial cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0002301 ! type B synovial cell -relationship: acts_on_population_of CL:0002301 ! type B synovial cell +intersection_of: RO:0012003 CL:0002301 ! acts on population of type B synovial cell +relationship: RO:0012003 CL:0002301 ! acts on population of type B synovial cell created_by: hjd creation_date: 2012-11-16T14:25:45Z @@ -40917,9 +40987,9 @@ def: "The developmental process in which the heart is generated and organized. T synonym: "cardiac morphogenesis" RELATED [] is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0007100 ! primary circulatory organ +intersection_of: RO:0002298 UBERON:0007100 ! results in morphogenesis of primary circulatory organ relationship: part_of GO:0007507 ! heart development -relationship: results_in_morphogenesis_of UBERON:0007100 ! primary circulatory organ +relationship: RO:0002298 UBERON:0007100 ! results in morphogenesis of primary circulatory organ [Term] id: GO:0003008 @@ -40936,8 +41006,8 @@ namespace: biological_process def: "A process in which force is generated within skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the skeletal muscle, the muscle contraction takes advantage of an ordered sarcomeric structure and in most cases it is under voluntary control." [GOC:mtg_cardio, GOC:mtg_muscle] is_a: GO:0006941 ! striated muscle contraction intersection_of: GO:0006936 ! muscle contraction -intersection_of: occurs_in UBERON:0001134 ! skeletal muscle tissue -relationship: occurs_in UBERON:0001134 ! skeletal muscle tissue +intersection_of: BFO:0000066 UBERON:0001134 ! occurs in skeletal muscle tissue +relationship: BFO:0000066 UBERON:0001134 ! occurs in skeletal muscle tissue relationship: part_of GO:0050881 ! musculoskeletal movement [Term] @@ -41133,8 +41203,8 @@ def: "Any process that modulates the frequency, rate or extent of glomerular fil is_a: GO:0001977 ! renal system process involved in regulation of blood volume is_a: GO:0098801 ! regulation of renal system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003094 ! glomerular filtration -relationship: regulates GO:0003094 ! glomerular filtration +intersection_of: RO:0002211 GO:0003094 ! regulates (processual) glomerular filtration +relationship: RO:0002211 GO:0003094 ! regulates (processual) glomerular filtration [Term] id: GO:0003094 @@ -41143,8 +41213,8 @@ namespace: biological_process def: "The process in which plasma is filtered through the glomerular membrane which consists of capillary endothelial cells, the basement membrane, and epithelial cells. The glomerular filtrate is the same as plasma except it has no significant amount of protein." [GOC:mtg_cardio, GOC:sart, ISBN:0721643949] is_a: GO:0097205 ! renal filtration intersection_of: GO:0097205 ! renal filtration -intersection_of: occurs_in UBERON:0000074 ! renal glomerulus -relationship: occurs_in UBERON:0000074 ! renal glomerulus +intersection_of: BFO:0000066 UBERON:0000074 ! occurs in renal glomerulus +relationship: BFO:0000066 UBERON:0000074 ! occurs in renal glomerulus [Term] id: GO:0003096 @@ -41154,8 +41224,8 @@ def: "The directed movement of sodium ions (Na+) by the renal system." [GOC:mtg_ is_a: GO:0003014 ! renal system process is_a: GO:0006814 ! sodium ion transport intersection_of: GO:0006814 ! sodium ion transport -intersection_of: occurs_in UBERON:0001008 ! renal system -relationship: occurs_in UBERON:0001008 ! renal system +intersection_of: BFO:0000066 UBERON:0001008 ! occurs in renal system +relationship: BFO:0000066 UBERON:0001008 ! occurs in renal system [Term] id: GO:0003097 @@ -41165,8 +41235,8 @@ def: "The directed movement of water (H2O) by the renal system." [GOC:mtg_cardio is_a: GO:0003014 ! renal system process is_a: GO:0006833 ! water transport intersection_of: GO:0006833 ! water transport -intersection_of: occurs_in UBERON:0001008 ! renal system -relationship: occurs_in UBERON:0001008 ! renal system +intersection_of: BFO:0000066 UBERON:0001008 ! occurs in renal system +relationship: BFO:0000066 UBERON:0001008 ! occurs in renal system relationship: part_of GO:0003091 ! renal water homeostasis [Term] @@ -41177,8 +41247,8 @@ def: "Any process that activates or increases the frequency, rate or extent of g is_a: GO:0003093 ! regulation of glomerular filtration is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003094 ! glomerular filtration -relationship: positively_regulates GO:0003094 ! glomerular filtration +intersection_of: RO:0002213 GO:0003094 ! positively regulates glomerular filtration +relationship: RO:0002213 GO:0003094 ! positively regulates glomerular filtration [Term] id: GO:0003105 @@ -41188,8 +41258,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0003093 ! regulation of glomerular filtration is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003094 ! glomerular filtration -relationship: negatively_regulates GO:0003094 ! glomerular filtration +intersection_of: RO:0002212 GO:0003094 ! negatively regulates glomerular filtration +relationship: RO:0002212 GO:0003094 ! negatively regulates glomerular filtration [Term] id: GO:0003131 @@ -41199,10 +41269,10 @@ def: "Any process that mediates the transfer of information from mesodermal cell synonym: "mesodermal-endodermal cell signalling" EXACT [GOC:mah] is_a: GO:0007267 ! cell-cell signaling intersection_of: GO:0007267 ! cell-cell signaling -intersection_of: has_end_location CL:0000223 ! endodermal cell -intersection_of: has_start_location CL:0000222 ! mesodermal cell -relationship: has_end_location CL:0000223 ! endodermal cell -relationship: has_start_location CL:0000222 ! mesodermal cell +intersection_of: RO:0002231 CL:0000222 ! has start location mesodermal cell +intersection_of: RO:0002232 CL:0000223 ! has end location endodermal cell +relationship: RO:0002231 CL:0000222 ! has start location mesodermal cell +relationship: RO:0002232 CL:0000223 ! has end location endodermal cell created_by: tb creation_date: 2009-09-22T03:07:34Z @@ -41214,10 +41284,10 @@ def: "Any process that mediates the transfer of information from endodermal cell synonym: "endodermal-mesodermal cell signalling" EXACT [GOC:mah] is_a: GO:0007267 ! cell-cell signaling intersection_of: GO:0007267 ! cell-cell signaling -intersection_of: has_end_location CL:0000222 ! mesodermal cell -intersection_of: has_start_location CL:0000223 ! endodermal cell -relationship: has_end_location CL:0000222 ! mesodermal cell -relationship: has_start_location CL:0000223 ! endodermal cell +intersection_of: RO:0002231 CL:0000223 ! has start location endodermal cell +intersection_of: RO:0002232 CL:0000222 ! has end location mesodermal cell +relationship: RO:0002231 CL:0000223 ! has start location endodermal cell +relationship: RO:0002232 CL:0000222 ! has end location mesodermal cell created_by: tb creation_date: 2009-09-22T03:10:29Z @@ -41229,9 +41299,9 @@ def: "The process in which the anatomical structures of the cardiogenic plate ar synonym: "cardiac crescent morphogenesis" EXACT [GOC:mtg_heart] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004139 ! cardiogenic plate +intersection_of: RO:0002298 UBERON:0004139 ! results in morphogenesis of cardiogenic plate relationship: part_of GO:0003007 ! heart morphogenesis -relationship: results_in_morphogenesis_of UBERON:0004139 ! cardiogenic plate +relationship: RO:0002298 UBERON:0004139 ! results in morphogenesis of cardiogenic plate created_by: tb creation_date: 2009-09-22T04:12:18Z @@ -41243,11 +41313,11 @@ def: "The process in which the anatomical structures of the embryonic heart tube is_a: GO:0048598 ! embryonic morphogenesis is_a: GO:0060562 ! epithelial tube morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004141 ! heart tube +intersection_of: RO:0002298 UBERON:0004141 ! results in morphogenesis of heart tube relationship: part_of GO:0003007 ! heart morphogenesis relationship: part_of GO:0035050 ! embryonic heart tube development relationship: part_of GO:0048562 ! embryonic organ morphogenesis -relationship: results_in_morphogenesis_of UBERON:0004141 ! heart tube +relationship: RO:0002298 UBERON:0004141 ! results in morphogenesis of heart tube created_by: tb creation_date: 2009-09-22T04:21:17Z @@ -41258,9 +41328,9 @@ namespace: biological_process def: "The process that gives rise to the embryonic heart tube. This process pertains to the initial formation of a structure from unspecified parts. The embryonic heart tube is an epithelial tube that will give rise to the mature heart." [GOC:mtg_heart] is_a: GO:0001838 ! embryonic epithelial tube formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0004141 ! heart tube +intersection_of: RO:0002297 UBERON:0004141 ! results in formation of anatomical entity heart tube relationship: part_of GO:0003143 ! embryonic heart tube morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0004141 ! heart tube +relationship: RO:0002297 UBERON:0004141 ! results in formation of anatomical entity heart tube created_by: tb creation_date: 2009-09-22T04:22:34Z @@ -41294,9 +41364,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the outflow tract septum are generated and organized. The outflow tract septum is a partition in the outflow tract." [GOC:mtg_heart] is_a: GO:0060411 ! cardiac septum morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004142 ! outflow tract septum +intersection_of: RO:0002298 UBERON:0004142 ! results in morphogenesis of outflow tract septum relationship: part_of GO:0003151 ! outflow tract morphogenesis -relationship: results_in_morphogenesis_of UBERON:0004142 ! outflow tract septum +relationship: RO:0002298 UBERON:0004142 ! results in morphogenesis of outflow tract septum created_by: tb creation_date: 2009-09-22T07:51:01Z @@ -41307,9 +41377,9 @@ namespace: biological_process def: "The process in which the membranous septum is generated and organized. The membranous septum is the upper part of ventricular septum." [GOC:mtg_heart] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004666 ! interventricular septum membranous part +intersection_of: RO:0002298 UBERON:0004666 ! results in morphogenesis of interventricular septum membranous part relationship: part_of GO:0060412 ! ventricular septum morphogenesis -relationship: results_in_morphogenesis_of UBERON:0004666 ! interventricular septum membranous part +relationship: RO:0002298 UBERON:0004666 ! results in morphogenesis of interventricular septum membranous part created_by: tb creation_date: 2009-09-22T07:51:41Z @@ -41320,9 +41390,9 @@ namespace: biological_process def: "The process in which the muscular septum is generated and organized. The muscular septum is the lower part of the ventricular septum." [GOC:mtg_heart] is_a: GO:0060415 ! muscle tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004667 ! interventricular septum muscular part +intersection_of: RO:0002298 UBERON:0004667 ! results in morphogenesis of interventricular septum muscular part relationship: part_of GO:0060412 ! ventricular septum morphogenesis -relationship: results_in_morphogenesis_of UBERON:0004667 ! interventricular septum muscular part +relationship: RO:0002298 UBERON:0004667 ! results in morphogenesis of interventricular septum muscular part created_by: tb creation_date: 2009-09-22T07:53:28Z @@ -41333,9 +41403,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the outflow tract are generated and organized. The outflow tract is the portion of the heart through which blood flows into the arteries." [GOC:mtg_heart, UBERON:0004145] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004145 ! outflow tract +intersection_of: RO:0002298 UBERON:0004145 ! results in morphogenesis of outflow tract relationship: part_of GO:0003007 ! heart morphogenesis -relationship: results_in_morphogenesis_of UBERON:0004145 ! outflow tract +relationship: RO:0002298 UBERON:0004145 ! results in morphogenesis of outflow tract created_by: tb creation_date: 2009-09-22T07:59:24Z @@ -41360,9 +41430,9 @@ namespace: biological_process def: "Any process that modulates the rate, frequency or extent of animal organ formation. Organ formation is the process pertaining to the initial formation of an organ from unspecified parts. The process begins with the specific processes that contribute to the appearance of the discrete structure, such as inductive events, and ends when the structural rudiment of the organ is recognizable, such as a condensation of mesenchymal cells into the organ rudiment." [GOC:dph, GOC:mtg_heart, GOC:tb] is_a: GO:2000027 ! regulation of animal organ morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048645 ! animal organ formation -relationship: regulates GO:0009887 ! animal organ morphogenesis -relationship: regulates GO:0048645 ! animal organ formation +intersection_of: RO:0002211 GO:0048645 ! regulates (processual) animal organ formation +relationship: RO:0002211 GO:0009887 ! regulates (processual) animal organ morphogenesis +relationship: RO:0002211 GO:0048645 ! regulates (processual) animal organ formation created_by: tb creation_date: 2009-09-30T11:21:09Z @@ -41373,9 +41443,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the endocardium over time, from its formation to the mature structure. The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers." [GOC:mtg_heart] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002165 ! endocardium +intersection_of: RO:0002296 UBERON:0002165 ! results in development of endocardium relationship: part_of GO:0007507 ! heart development -relationship: results_in_development_of UBERON:0002165 ! endocardium +relationship: RO:0002296 UBERON:0002165 ! results in development of endocardium created_by: dph creation_date: 2009-10-01T12:42:27Z @@ -41386,8 +41456,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of an endothelium over time, from its formation to the mature structure. Endothelium refers to the layer of cells lining blood vessels, lymphatics, the heart, and serous cavities, and is derived from bone marrow or mesoderm. Corneal endothelium is a special case, derived from neural crest cells." [GOC:mtg_heart] is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001986 ! endothelium -relationship: results_in_development_of UBERON:0001986 ! endothelium +intersection_of: RO:0002296 UBERON:0001986 ! results in development of endothelium +relationship: RO:0002296 UBERON:0001986 ! results in development of endothelium created_by: dph creation_date: 2009-10-01T12:50:57Z @@ -41398,9 +41468,9 @@ namespace: biological_process def: "The process in which the anatomical structure of an endothelium is generated and organized. Endothelium refers to the layer of cells lining blood vessels, lymphatics, the heart, and serous cavities, and is derived from bone marrow or mesoderm. Corneal endothelium is a special case, derived from neural crest cells." [GOC:mtg_heart] is_a: GO:0002009 ! morphogenesis of an epithelium intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001986 ! endothelium +intersection_of: RO:0002298 UBERON:0001986 ! results in morphogenesis of endothelium relationship: part_of GO:0003158 ! endothelium development -relationship: results_in_morphogenesis_of UBERON:0001986 ! endothelium +relationship: RO:0002298 UBERON:0001986 ! results in morphogenesis of endothelium created_by: dph creation_date: 2009-10-01T01:34:06Z @@ -41411,9 +41481,9 @@ namespace: biological_process def: "The process in which the anatomical structure of the endocardium is generated and organized. The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers." [GOC:mtg_heart] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002165 ! endocardium +intersection_of: RO:0002298 UBERON:0002165 ! results in morphogenesis of endocardium relationship: part_of GO:0003157 ! endocardium development -relationship: results_in_morphogenesis_of UBERON:0002165 ! endocardium +relationship: RO:0002298 UBERON:0002165 ! results in morphogenesis of endocardium created_by: dph creation_date: 2009-10-01T01:37:26Z @@ -41426,9 +41496,9 @@ synonym: "cardiac impulse conducting system development" EXACT [GOC:mtg_heart] synonym: "heart conduction system development" EXACT [GOC:mtg_heart] is_a: GO:0048738 ! cardiac muscle tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002350 ! conducting system of heart +intersection_of: RO:0002296 UBERON:0002350 ! results in development of conducting system of heart relationship: part_of GO:0007507 ! heart development -relationship: results_in_development_of UBERON:0002350 ! conducting system of heart +relationship: RO:0002296 UBERON:0002350 ! results in development of conducting system of heart created_by: dph creation_date: 2009-10-01T01:57:16Z @@ -41440,9 +41510,9 @@ def: "The process whose specific outcome is the progression of the atrioventricu synonym: "AV node development" EXACT [GOC:mtg_heart] is_a: GO:0048738 ! cardiac muscle tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002352 ! atrioventricular node +intersection_of: RO:0002296 UBERON:0002352 ! results in development of atrioventricular node relationship: part_of GO:0003161 ! cardiac conduction system development -relationship: results_in_development_of UBERON:0002352 ! atrioventricular node +relationship: RO:0002296 UBERON:0002352 ! results in development of atrioventricular node created_by: dph creation_date: 2009-10-01T02:05:13Z @@ -41456,9 +41526,9 @@ synonym: "SAN development" EXACT [GOC:BHF, GOC:mtg_cardiac_conduct_nov11] synonym: "sinus node development" NARROW [GOC:BHF, GOC:mtg_cardiac_conduct_nov11] is_a: GO:0003228 ! atrial cardiac muscle tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002351 ! sinoatrial node +intersection_of: RO:0002296 UBERON:0002351 ! results in development of sinoatrial node relationship: part_of GO:0003161 ! cardiac conduction system development -relationship: results_in_development_of UBERON:0002351 ! sinoatrial node +relationship: RO:0002296 UBERON:0002351 ! results in development of sinoatrial node created_by: dph creation_date: 2009-10-01T02:06:09Z @@ -41469,9 +41539,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the His-Purkinje system over time, from its formation to the mature structure. The His-Purkinje system receives signals from the AV node and is composed of the fibers that regulate cardiac muscle contraction in the ventricles." [GOC:mtg_heart] is_a: GO:0003229 ! ventricular cardiac muscle tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004146 ! His-Purkinje system +intersection_of: RO:0002296 UBERON:0004146 ! results in development of His-Purkinje system relationship: part_of GO:0003161 ! cardiac conduction system development -relationship: results_in_development_of UBERON:0004146 ! His-Purkinje system +relationship: RO:0002296 UBERON:0004146 ! results in development of His-Purkinje system created_by: dph creation_date: 2009-10-01T02:07:12Z @@ -41483,9 +41553,9 @@ def: "The process whose specific outcome is the progression of a Purkinje myocyt synonym: "cardiac Purkinje fiber development" EXACT [] is_a: GO:0003229 ! ventricular cardiac muscle tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002354 ! cardiac Purkinje fiber +intersection_of: RO:0002296 UBERON:0002354 ! results in development of cardiac Purkinje fiber relationship: part_of GO:0003164 ! His-Purkinje system development -relationship: results_in_development_of UBERON:0002354 ! cardiac Purkinje fiber +relationship: RO:0002296 UBERON:0002354 ! results in development of cardiac Purkinje fiber created_by: dph creation_date: 2009-10-01T02:07:50Z @@ -41497,9 +41567,9 @@ def: "The process whose specific outcome is the progression of the bundle of His synonym: "atrioventricular bundle development" EXACT [GOC:mtg_heart] is_a: GO:0003229 ! ventricular cardiac muscle tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002353 ! bundle of His +intersection_of: RO:0002296 UBERON:0002353 ! results in development of bundle of His relationship: part_of GO:0003164 ! His-Purkinje system development -relationship: results_in_development_of UBERON:0002353 ! bundle of His +relationship: RO:0002296 UBERON:0002353 ! results in development of bundle of His created_by: dph creation_date: 2009-10-01T02:08:43Z @@ -41511,9 +41581,9 @@ def: "The process in which a relatively unspecialized cell acquires the speciali synonym: "AV bundle cell differentiation" EXACT [GOC:mtg_heart] is_a: GO:0060932 ! His-Purkinje system cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0010005 ! atrioventricular bundle cell +intersection_of: RO:0002315 CL:0010005 ! results in acquisition of features of atrioventricular bundle cell relationship: part_of GO:0003166 ! bundle of His development -relationship: results_in_acquisition_of_features_of CL:0010005 ! atrioventricular bundle cell +relationship: RO:0002315 CL:0010005 ! results in acquisition of features of atrioventricular bundle cell created_by: dph creation_date: 2009-10-01T02:48:23Z @@ -41525,9 +41595,9 @@ def: "The process in which a relatively unspecialized cell acquires the speciali synonym: "cardiac Purkinje fiber cell differentiation" EXACT [] is_a: GO:0060932 ! His-Purkinje system cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002068 ! Purkinje myocyte +intersection_of: RO:0002315 CL:0002068 ! results in acquisition of features of Purkinje myocyte relationship: part_of GO:0003165 ! Purkinje myocyte development -relationship: results_in_acquisition_of_features_of CL:0002068 ! Purkinje myocyte +relationship: RO:0002315 CL:0002068 ! results in acquisition of features of Purkinje myocyte created_by: dph creation_date: 2009-10-01T02:49:54Z @@ -41539,8 +41609,8 @@ def: "The process in which the anatomical structures of veins of the heart are g is_a: GO:0048845 ! venous blood vessel morphogenesis is_a: GO:0060977 ! coronary vasculature morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004148 ! cardiac vein -relationship: results_in_morphogenesis_of UBERON:0004148 ! cardiac vein +intersection_of: RO:0002298 UBERON:0004148 ! results in morphogenesis of cardiac vein +relationship: RO:0002298 UBERON:0004148 ! results in morphogenesis of cardiac vein created_by: dph creation_date: 2009-10-08T10:45:41Z @@ -41552,9 +41622,9 @@ def: "The progression of a heart valve over time, from its formation to the matu synonym: "cardiac valve development" EXACT [GOC:mtg_heart] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000946 ! cardiac valve +intersection_of: RO:0002296 UBERON:0000946 ! results in development of cardiac valve relationship: part_of GO:0007507 ! heart development -relationship: results_in_development_of UBERON:0000946 ! cardiac valve +relationship: RO:0002296 UBERON:0000946 ! results in development of cardiac valve created_by: dph creation_date: 2009-10-08T10:50:09Z @@ -41566,8 +41636,8 @@ def: "The progression of the atrioventricular valve over time, from its formatio synonym: "AV valve development" EXACT [GOC:mah] is_a: GO:0003170 ! heart valve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002133 ! atrioventricular valve -relationship: results_in_development_of UBERON:0002133 ! atrioventricular valve +intersection_of: RO:0002296 UBERON:0002133 ! results in development of atrioventricular valve +relationship: RO:0002296 UBERON:0002133 ! results in development of atrioventricular valve created_by: dph creation_date: 2009-10-08T11:14:21Z @@ -41579,8 +41649,8 @@ def: "The progression of the sinoatrial valve over time, from its formation to t synonym: "SA valve development" EXACT [GOC:mah] is_a: GO:0003170 ! heart valve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002086 ! sinoatrial valve -relationship: results_in_development_of UBERON:0002086 ! sinoatrial valve +intersection_of: RO:0002296 UBERON:0002086 ! results in development of sinoatrial valve +relationship: RO:0002296 UBERON:0002086 ! results in development of sinoatrial valve created_by: dph creation_date: 2009-10-08T11:15:39Z @@ -41591,8 +41661,8 @@ namespace: biological_process def: "The progression of the ventriculo bulbo valve over time, from its formation to the mature structure." [GOC:mtg_heart] is_a: GO:0003170 ! heart valve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004149 ! ventriculo bulbo valve -relationship: results_in_development_of UBERON:0004149 ! ventriculo bulbo valve +intersection_of: RO:0002296 UBERON:0004149 ! results in development of ventriculo bulbo valve +relationship: RO:0002296 UBERON:0004149 ! results in development of ventriculo bulbo valve created_by: dph creation_date: 2009-10-08T11:16:25Z @@ -41603,8 +41673,8 @@ namespace: biological_process def: "The progression of the mitral valve over time, from its formation to the mature structure." [GOC:mtg_heart] is_a: GO:0003171 ! atrioventricular valve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002135 ! mitral valve -relationship: results_in_development_of UBERON:0002135 ! mitral valve +intersection_of: RO:0002296 UBERON:0002135 ! results in development of mitral valve +relationship: RO:0002296 UBERON:0002135 ! results in development of mitral valve created_by: dph creation_date: 2009-10-08T11:17:22Z @@ -41615,8 +41685,8 @@ namespace: biological_process def: "The progression of the tricuspid valve over time, from its formation to the mature structure." [GOC:mtg_heart] is_a: GO:0003171 ! atrioventricular valve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002134 ! tricuspid valve -relationship: results_in_development_of UBERON:0002134 ! tricuspid valve +intersection_of: RO:0002296 UBERON:0002134 ! results in development of tricuspid valve +relationship: RO:0002296 UBERON:0002134 ! results in development of tricuspid valve created_by: dph creation_date: 2009-10-08T11:18:12Z @@ -41627,8 +41697,8 @@ namespace: biological_process def: "The progression of the aortic valve over time, from its formation to the mature structure." [GOC:mtg_heart] is_a: GO:1905314 ! semi-lunar valve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002137 ! aortic valve -relationship: results_in_development_of UBERON:0002137 ! aortic valve +intersection_of: RO:0002296 UBERON:0002137 ! results in development of aortic valve +relationship: RO:0002296 UBERON:0002137 ! results in development of aortic valve created_by: dph creation_date: 2009-10-08T11:18:55Z @@ -41639,8 +41709,8 @@ namespace: biological_process def: "The progression of the pulmonary valve over time, from its formation to the mature structure." [GOC:mtg_heart] is_a: GO:1905314 ! semi-lunar valve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002146 ! pulmonary valve -relationship: results_in_development_of UBERON:0002146 ! pulmonary valve +intersection_of: RO:0002296 UBERON:0002146 ! results in development of pulmonary valve +relationship: RO:0002296 UBERON:0002146 ! results in development of pulmonary valve created_by: dph creation_date: 2009-10-08T11:19:44Z @@ -41651,8 +41721,8 @@ namespace: biological_process def: "The progression of the valve of the coronary sinus over time, from its formation to the mature structure." [GOC:mtg_heart] is_a: GO:0003170 ! heart valve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004150 ! coronary sinus valve -relationship: results_in_development_of UBERON:0004150 ! coronary sinus valve +intersection_of: RO:0002296 UBERON:0004150 ! results in development of coronary sinus valve +relationship: RO:0002296 UBERON:0004150 ! results in development of coronary sinus valve created_by: dph creation_date: 2009-10-08T11:21:43Z @@ -41665,9 +41735,9 @@ synonym: "heart valve remodeling" NARROW [GOC:vk, GOC:yaf] synonym: "heart valve remodelling" NARROW [GOC:vk, GOC:yaf] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000946 ! cardiac valve +intersection_of: RO:0002298 UBERON:0000946 ! results in morphogenesis of cardiac valve relationship: part_of GO:0003170 ! heart valve development -relationship: results_in_morphogenesis_of UBERON:0000946 ! cardiac valve +relationship: RO:0002298 UBERON:0000946 ! results in morphogenesis of cardiac valve created_by: dph creation_date: 2009-10-08T11:23:48Z @@ -41678,9 +41748,9 @@ namespace: biological_process def: "The process in which the structure of the aortic valve is generated and organized." [GOC:mtg_heart] is_a: GO:0003179 ! heart valve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002137 ! aortic valve +intersection_of: RO:0002298 UBERON:0002137 ! results in morphogenesis of aortic valve relationship: part_of GO:0003176 ! aortic valve development -relationship: results_in_morphogenesis_of UBERON:0002137 ! aortic valve +relationship: RO:0002298 UBERON:0002137 ! results in morphogenesis of aortic valve created_by: dph creation_date: 2009-10-08T11:29:42Z @@ -41692,9 +41762,9 @@ def: "The process in which the structure of the atrioventricular valve is genera synonym: "AV valve morphogenesis" EXACT [GOC:mah] is_a: GO:0003179 ! heart valve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002133 ! atrioventricular valve +intersection_of: RO:0002298 UBERON:0002133 ! results in morphogenesis of atrioventricular valve relationship: part_of GO:0003171 ! atrioventricular valve development -relationship: results_in_morphogenesis_of UBERON:0002133 ! atrioventricular valve +relationship: RO:0002298 UBERON:0002133 ! results in morphogenesis of atrioventricular valve created_by: dph creation_date: 2009-10-08T11:31:59Z @@ -41705,9 +41775,9 @@ namespace: biological_process def: "The process in which the structure of the coronary sinus valve is generated and organized." [GOC:mtg_heart] is_a: GO:0003179 ! heart valve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004150 ! coronary sinus valve +intersection_of: RO:0002298 UBERON:0004150 ! results in morphogenesis of coronary sinus valve relationship: part_of GO:0003178 ! coronary sinus valve development -relationship: results_in_morphogenesis_of UBERON:0004150 ! coronary sinus valve +relationship: RO:0002298 UBERON:0004150 ! results in morphogenesis of coronary sinus valve created_by: dph creation_date: 2009-10-08T11:33:31Z @@ -41718,9 +41788,9 @@ namespace: biological_process def: "The process in which the structure of the mitral valve is generated and organized." [GOC:mtg_heart] is_a: GO:0003181 ! atrioventricular valve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002135 ! mitral valve +intersection_of: RO:0002298 UBERON:0002135 ! results in morphogenesis of mitral valve relationship: part_of GO:0003174 ! mitral valve development -relationship: results_in_morphogenesis_of UBERON:0002135 ! mitral valve +relationship: RO:0002298 UBERON:0002135 ! results in morphogenesis of mitral valve created_by: dph creation_date: 2009-10-08T12:02:01Z @@ -41731,9 +41801,9 @@ namespace: biological_process def: "The process in which the structure of the pulmonary valve is generated and organized." [GOC:mtg_heart] is_a: GO:0003179 ! heart valve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002146 ! pulmonary valve +intersection_of: RO:0002298 UBERON:0002146 ! results in morphogenesis of pulmonary valve relationship: part_of GO:0003177 ! pulmonary valve development -relationship: results_in_morphogenesis_of UBERON:0002146 ! pulmonary valve +relationship: RO:0002298 UBERON:0002146 ! results in morphogenesis of pulmonary valve created_by: dph creation_date: 2009-10-08T12:03:35Z @@ -41745,9 +41815,9 @@ def: "The process in which the structure of the sinoatrial valve is generated an synonym: "SA valve morphogenesis" EXACT [GOC:mah] is_a: GO:0003179 ! heart valve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002086 ! sinoatrial valve +intersection_of: RO:0002298 UBERON:0002086 ! results in morphogenesis of sinoatrial valve relationship: part_of GO:0003172 ! sinoatrial valve development -relationship: results_in_morphogenesis_of UBERON:0002086 ! sinoatrial valve +relationship: RO:0002298 UBERON:0002086 ! results in morphogenesis of sinoatrial valve created_by: dph creation_date: 2009-10-08T12:04:52Z @@ -41758,9 +41828,9 @@ namespace: biological_process def: "The process in which the structure of the tricuspid valve is generated and organized." [GOC:mtg_heart] is_a: GO:0003181 ! atrioventricular valve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002134 ! tricuspid valve +intersection_of: RO:0002298 UBERON:0002134 ! results in morphogenesis of tricuspid valve relationship: part_of GO:0003175 ! tricuspid valve development -relationship: results_in_morphogenesis_of UBERON:0002134 ! tricuspid valve +relationship: RO:0002298 UBERON:0002134 ! results in morphogenesis of tricuspid valve created_by: dph creation_date: 2009-10-08T12:05:45Z @@ -41771,9 +41841,9 @@ namespace: biological_process def: "The process in which the structure of the ventriculo bulbo valve is generated and organized." [GOC:mtg_heart] is_a: GO:0003179 ! heart valve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004149 ! ventriculo bulbo valve +intersection_of: RO:0002298 UBERON:0004149 ! results in morphogenesis of ventriculo bulbo valve relationship: part_of GO:0003173 ! ventriculo bulbo valve development -relationship: results_in_morphogenesis_of UBERON:0004149 ! ventriculo bulbo valve +relationship: RO:0002298 UBERON:0004149 ! results in morphogenesis of ventriculo bulbo valve created_by: dph creation_date: 2009-10-08T12:07:00Z @@ -41784,9 +41854,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a heart valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable." [GOC:mtg_heart] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000946 ! cardiac valve +intersection_of: RO:0002297 UBERON:0000946 ! results in formation of anatomical entity cardiac valve relationship: part_of GO:0003179 ! heart valve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0000946 ! cardiac valve +relationship: RO:0002297 UBERON:0000946 ! results in formation of anatomical entity cardiac valve created_by: dph creation_date: 2009-10-08T12:20:15Z @@ -41797,9 +41867,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of the aortic valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable." [GOC:mtg_heart] is_a: GO:0003188 ! heart valve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002137 ! aortic valve +intersection_of: RO:0002297 UBERON:0002137 ! results in formation of anatomical entity aortic valve relationship: part_of GO:0003180 ! aortic valve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002137 ! aortic valve +relationship: RO:0002297 UBERON:0002137 ! results in formation of anatomical entity aortic valve created_by: dph creation_date: 2009-10-08T01:05:44Z @@ -41811,9 +41881,9 @@ def: "The developmental process pertaining to the initial formation of the atrio synonym: "AV valve formation" EXACT [GOC:mah] is_a: GO:0003188 ! heart valve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002133 ! atrioventricular valve +intersection_of: RO:0002297 UBERON:0002133 ! results in formation of anatomical entity atrioventricular valve relationship: part_of GO:0003181 ! atrioventricular valve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002133 ! atrioventricular valve +relationship: RO:0002297 UBERON:0002133 ! results in formation of anatomical entity atrioventricular valve created_by: dph creation_date: 2009-10-08T01:07:28Z @@ -41824,9 +41894,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of the coronary sinus valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable." [GOC:mtg_heart] is_a: GO:0003188 ! heart valve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0004150 ! coronary sinus valve +intersection_of: RO:0002297 UBERON:0004150 ! results in formation of anatomical entity coronary sinus valve relationship: part_of GO:0003182 ! coronary sinus valve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0004150 ! coronary sinus valve +relationship: RO:0002297 UBERON:0004150 ! results in formation of anatomical entity coronary sinus valve created_by: dph creation_date: 2009-10-08T01:09:04Z @@ -41837,9 +41907,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of the mitral valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable." [GOC:mtg_heart] is_a: GO:0003190 ! atrioventricular valve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002135 ! mitral valve +intersection_of: RO:0002297 UBERON:0002135 ! results in formation of anatomical entity mitral valve relationship: part_of GO:0003183 ! mitral valve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002135 ! mitral valve +relationship: RO:0002297 UBERON:0002135 ! results in formation of anatomical entity mitral valve created_by: dph creation_date: 2009-10-08T01:10:19Z @@ -41850,9 +41920,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of the pulmonary valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable." [GOC:mtg_heart] is_a: GO:0003188 ! heart valve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002146 ! pulmonary valve +intersection_of: RO:0002297 UBERON:0002146 ! results in formation of anatomical entity pulmonary valve relationship: part_of GO:0003184 ! pulmonary valve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002146 ! pulmonary valve +relationship: RO:0002297 UBERON:0002146 ! results in formation of anatomical entity pulmonary valve created_by: dph creation_date: 2009-10-08T01:11:20Z @@ -41864,9 +41934,9 @@ def: "The developmental process pertaining to the initial formation of the sinoa synonym: "SA valve formation" EXACT [GOC:mah] is_a: GO:0003188 ! heart valve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002086 ! sinoatrial valve +intersection_of: RO:0002297 UBERON:0002086 ! results in formation of anatomical entity sinoatrial valve relationship: part_of GO:0003185 ! sinoatrial valve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002086 ! sinoatrial valve +relationship: RO:0002297 UBERON:0002086 ! results in formation of anatomical entity sinoatrial valve created_by: dph creation_date: 2009-10-08T01:12:45Z @@ -41877,9 +41947,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of the tricuspid valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable." [GOC:mtg_heart] is_a: GO:0003190 ! atrioventricular valve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002134 ! tricuspid valve +intersection_of: RO:0002297 UBERON:0002134 ! results in formation of anatomical entity tricuspid valve relationship: part_of GO:0003186 ! tricuspid valve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002134 ! tricuspid valve +relationship: RO:0002297 UBERON:0002134 ! results in formation of anatomical entity tricuspid valve created_by: dph creation_date: 2009-10-08T01:14:40Z @@ -41890,9 +41960,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of the ventriculo bulbo valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable." [GOC:mtg_heart] is_a: GO:0003188 ! heart valve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0004149 ! ventriculo bulbo valve +intersection_of: RO:0002297 UBERON:0004149 ! results in formation of anatomical entity ventriculo bulbo valve relationship: part_of GO:0003187 ! ventriculo bulbo valve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0004149 ! ventriculo bulbo valve +relationship: RO:0002297 UBERON:0004149 ! results in formation of anatomical entity ventriculo bulbo valve created_by: dph creation_date: 2009-10-08T01:16:02Z @@ -41903,9 +41973,9 @@ namespace: biological_process def: "The progression of a cardiac cushion over time, from its initial formation to the mature structure. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves." [GOC:mtg_heart] is_a: GO:0060485 ! mesenchyme development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002062 ! endocardial cushion +intersection_of: RO:0002296 UBERON:0002062 ! results in development of endocardial cushion relationship: part_of GO:0007507 ! heart development -relationship: results_in_development_of UBERON:0002062 ! endocardial cushion +relationship: RO:0002296 UBERON:0002062 ! results in development of endocardial cushion created_by: dph creation_date: 2009-10-08T01:17:43Z @@ -41916,10 +41986,10 @@ namespace: biological_process def: "The process in which the anatomical structure of the endocardial cushion is generated and organized. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves." [GOC:mtg_heart] is_a: GO:0072132 ! mesenchyme morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002062 ! endocardial cushion +intersection_of: RO:0002298 UBERON:0002062 ! results in morphogenesis of endocardial cushion relationship: part_of GO:0003007 ! heart morphogenesis relationship: part_of GO:0003197 ! endocardial cushion development -relationship: results_in_morphogenesis_of UBERON:0002062 ! endocardial cushion +relationship: RO:0002298 UBERON:0002062 ! results in morphogenesis of endocardial cushion created_by: dph creation_date: 2009-10-08T01:43:22Z @@ -41931,9 +42001,9 @@ def: "The progression of the cardiac skeleton over time, from its formation to t synonym: "heart fibrous skeleton development" EXACT [GOC:mtg_heart] is_a: GO:0061448 ! connective tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004292 ! cardiac skeleton +intersection_of: RO:0002296 UBERON:0004292 ! results in development of cardiac skeleton relationship: part_of GO:0007507 ! heart development -relationship: results_in_development_of UBERON:0004292 ! cardiac skeleton +relationship: RO:0002296 UBERON:0004292 ! results in development of cardiac skeleton created_by: dph creation_date: 2009-10-13T09:05:04Z @@ -41944,9 +42014,9 @@ namespace: biological_process def: "The progression of a cardiac chamber over time, from its formation to the mature structure. A cardiac chamber is an enclosed cavity within the heart." [GOC:mtg_heart] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004151 ! cardiac chamber +intersection_of: RO:0002296 UBERON:0004151 ! results in development of cardiac chamber relationship: part_of GO:0007507 ! heart development -relationship: results_in_development_of UBERON:0004151 ! cardiac chamber +relationship: RO:0002296 UBERON:0004151 ! results in development of cardiac chamber created_by: dph creation_date: 2009-10-13T09:11:18Z @@ -41958,10 +42028,10 @@ def: "The process in which a cardiac chamber is generated and organized. A cardi synonym: "heart chamber morphogenesis" EXACT [GOC:mtg_heart] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004151 ! cardiac chamber +intersection_of: RO:0002298 UBERON:0004151 ! results in morphogenesis of cardiac chamber relationship: part_of GO:0003007 ! heart morphogenesis relationship: part_of GO:0003205 ! cardiac chamber development -relationship: results_in_morphogenesis_of UBERON:0004151 ! cardiac chamber +relationship: RO:0002298 UBERON:0004151 ! results in morphogenesis of cardiac chamber created_by: dph creation_date: 2009-10-13T09:14:51Z @@ -41973,9 +42043,9 @@ def: "The developmental process pertaining to the initial formation of a cardiac synonym: "heart chamber formation" EXACT [GOC:mtg_heart] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0004151 ! cardiac chamber +intersection_of: RO:0002297 UBERON:0004151 ! results in formation of anatomical entity cardiac chamber relationship: part_of GO:0003206 ! cardiac chamber morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0004151 ! cardiac chamber +relationship: RO:0002297 UBERON:0004151 ! results in formation of anatomical entity cardiac chamber created_by: dph creation_date: 2009-10-13T09:29:13Z @@ -41986,9 +42056,9 @@ namespace: biological_process def: "The process in which the cardiac ventricle is generated and organized. A cardiac ventricle receives blood from a cardiac atrium and pumps it out of the heart." [GOC:mtg_heart] is_a: GO:0003206 ! cardiac chamber morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002082 ! cardiac ventricle +intersection_of: RO:0002298 UBERON:0002082 ! results in morphogenesis of cardiac ventricle relationship: part_of GO:0003231 ! cardiac ventricle development -relationship: results_in_morphogenesis_of UBERON:0002082 ! cardiac ventricle +relationship: RO:0002298 UBERON:0002082 ! results in morphogenesis of cardiac ventricle created_by: dph creation_date: 2009-10-13T09:38:44Z @@ -41999,9 +42069,9 @@ namespace: biological_process def: "The process in which the cardiac atrium is generated and organized. A cardiac atrium receives blood from a vein and pumps it to a cardiac ventricle." [GOC:mtg_heart] is_a: GO:0003206 ! cardiac chamber morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002081 ! cardiac atrium +intersection_of: RO:0002298 UBERON:0002081 ! results in morphogenesis of cardiac atrium relationship: part_of GO:0003230 ! cardiac atrium development -relationship: results_in_morphogenesis_of UBERON:0002081 ! cardiac atrium +relationship: RO:0002298 UBERON:0002081 ! results in morphogenesis of cardiac atrium created_by: dph creation_date: 2009-10-13T09:39:44Z @@ -42012,9 +42082,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a cardiac atrium from unspecified parts. A cardiac atrium receives blood from a vein and pumps it to a cardiac ventricle." [GOC:mtg_heart] is_a: GO:0003207 ! cardiac chamber formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002081 ! cardiac atrium +intersection_of: RO:0002297 UBERON:0002081 ! results in formation of anatomical entity cardiac atrium relationship: part_of GO:0003209 ! cardiac atrium morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002081 ! cardiac atrium +relationship: RO:0002297 UBERON:0002081 ! results in formation of anatomical entity cardiac atrium created_by: dph creation_date: 2009-10-13T09:44:25Z @@ -42025,9 +42095,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a cardiac ventricle from unspecified parts. A cardiac ventricle receives blood from a cardiac atrium and pumps it out of the heart." [GOC:mtg_heart] is_a: GO:0003207 ! cardiac chamber formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002082 ! cardiac ventricle +intersection_of: RO:0002297 UBERON:0002082 ! results in formation of anatomical entity cardiac ventricle relationship: part_of GO:0003208 ! cardiac ventricle morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002082 ! cardiac ventricle +relationship: RO:0002297 UBERON:0002082 ! results in formation of anatomical entity cardiac ventricle created_by: dph creation_date: 2009-10-13T09:46:27Z @@ -42038,8 +42108,8 @@ namespace: biological_process def: "The process in which the left cardiac atrium is generated and organized." [GOC:mtg_heart] is_a: GO:0003209 ! cardiac atrium morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002079 ! left cardiac atrium -relationship: results_in_morphogenesis_of UBERON:0002079 ! left cardiac atrium +intersection_of: RO:0002298 UBERON:0002079 ! results in morphogenesis of left cardiac atrium +relationship: RO:0002298 UBERON:0002079 ! results in morphogenesis of left cardiac atrium created_by: dph creation_date: 2009-10-13T09:48:16Z @@ -42050,8 +42120,8 @@ namespace: biological_process def: "The process in which the right cardiac atrium is generated and organized." [GOC:mtg_heart] is_a: GO:0003209 ! cardiac atrium morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002078 ! right cardiac atrium -relationship: results_in_morphogenesis_of UBERON:0002078 ! right cardiac atrium +intersection_of: RO:0002298 UBERON:0002078 ! results in morphogenesis of right cardiac atrium +relationship: RO:0002298 UBERON:0002078 ! results in morphogenesis of right cardiac atrium created_by: dph creation_date: 2009-10-13T09:49:03Z @@ -42062,8 +42132,8 @@ namespace: biological_process def: "The process in which the left cardiac ventricle is generated and organized." [GOC:mtg_heart] is_a: GO:0003208 ! cardiac ventricle morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002084 ! heart left ventricle -relationship: results_in_morphogenesis_of UBERON:0002084 ! heart left ventricle +intersection_of: RO:0002298 UBERON:0002084 ! results in morphogenesis of heart left ventricle +relationship: RO:0002298 UBERON:0002084 ! results in morphogenesis of heart left ventricle created_by: dph creation_date: 2009-10-13T09:50:08Z @@ -42074,8 +42144,8 @@ namespace: biological_process def: "The process in which the right cardiac ventricle is generated and organized." [GOC:mtg_heart] is_a: GO:0003208 ! cardiac ventricle morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002080 ! heart right ventricle -relationship: results_in_morphogenesis_of UBERON:0002080 ! heart right ventricle +intersection_of: RO:0002298 UBERON:0002080 ! results in morphogenesis of heart right ventricle +relationship: RO:0002298 UBERON:0002080 ! results in morphogenesis of heart right ventricle created_by: dph creation_date: 2009-10-13T09:50:57Z @@ -42086,9 +42156,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a left cardiac atrium from unspecified parts." [GOC:mtg_heart] is_a: GO:0003210 ! cardiac atrium formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002079 ! left cardiac atrium +intersection_of: RO:0002297 UBERON:0002079 ! results in formation of anatomical entity left cardiac atrium relationship: part_of GO:0003212 ! cardiac left atrium morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002079 ! left cardiac atrium +relationship: RO:0002297 UBERON:0002079 ! results in formation of anatomical entity left cardiac atrium created_by: dph creation_date: 2009-10-13T09:52:31Z @@ -42099,9 +42169,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a cardiac right atrium from unspecified parts." [GOC:mtg_heart] is_a: GO:0003210 ! cardiac atrium formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002078 ! right cardiac atrium +intersection_of: RO:0002297 UBERON:0002078 ! results in formation of anatomical entity right cardiac atrium relationship: part_of GO:0003213 ! cardiac right atrium morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002078 ! right cardiac atrium +relationship: RO:0002297 UBERON:0002078 ! results in formation of anatomical entity right cardiac atrium created_by: dph creation_date: 2009-10-13T09:53:12Z @@ -42112,9 +42182,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a left cardiac ventricle from unspecified parts." [GOC:mtg_heart] is_a: GO:0003211 ! cardiac ventricle formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002084 ! heart left ventricle +intersection_of: RO:0002297 UBERON:0002084 ! results in formation of anatomical entity heart left ventricle relationship: part_of GO:0003214 ! cardiac left ventricle morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002084 ! heart left ventricle +relationship: RO:0002297 UBERON:0002084 ! results in formation of anatomical entity heart left ventricle created_by: dph creation_date: 2009-10-13T09:54:33Z @@ -42125,9 +42195,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a right cardiac ventricle from unspecified parts." [GOC:mtg_heart] is_a: GO:0003211 ! cardiac ventricle formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002080 ! heart right ventricle +intersection_of: RO:0002297 UBERON:0002080 ! results in formation of anatomical entity heart right ventricle relationship: part_of GO:0003215 ! cardiac right ventricle morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002080 ! heart right ventricle +relationship: RO:0002297 UBERON:0002080 ! results in formation of anatomical entity heart right ventricle created_by: dph creation_date: 2009-10-13T09:55:38Z @@ -42139,9 +42209,9 @@ def: "The process in which the anatomical structures of left cardiac ventricle m synonym: "left ventricular myocardium morphogenesis" EXACT [GOC:mtg_heart] is_a: GO:0055010 ! ventricular cardiac muscle tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003382 ! cardiac muscle of left ventricle +intersection_of: RO:0002298 UBERON:0003382 ! results in morphogenesis of cardiac muscle of left ventricle relationship: part_of GO:0003214 ! cardiac left ventricle morphogenesis -relationship: results_in_morphogenesis_of UBERON:0003382 ! cardiac muscle of left ventricle +relationship: RO:0002298 UBERON:0003382 ! results in morphogenesis of cardiac muscle of left ventricle created_by: dph creation_date: 2009-10-13T10:18:05Z @@ -42153,9 +42223,9 @@ def: "The process in which the anatomical structures of the right cardiac ventri synonym: "right ventricle myocardium morphogenesis" EXACT [GOC:mtg_heart] is_a: GO:0055010 ! ventricular cardiac muscle tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003381 ! cardiac muscle of right ventricle +intersection_of: RO:0002298 UBERON:0003381 ! results in morphogenesis of cardiac muscle of right ventricle relationship: part_of GO:0003215 ! cardiac right ventricle morphogenesis -relationship: results_in_morphogenesis_of UBERON:0003381 ! cardiac muscle of right ventricle +relationship: RO:0002298 UBERON:0003381 ! results in morphogenesis of cardiac muscle of right ventricle created_by: dph creation_date: 2009-10-13T10:26:33Z @@ -42168,8 +42238,8 @@ synonym: "trabecula carnea morphogenesis" RELATED [GOC:dph] is_a: GO:0055010 ! ventricular cardiac muscle tissue morphogenesis is_a: GO:0061384 ! heart trabecula morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004126 ! trabecular layer of ventricle -relationship: results_in_morphogenesis_of UBERON:0004126 ! trabecular layer of ventricle +intersection_of: RO:0002298 UBERON:0004126 ! results in morphogenesis of trabecular layer of ventricle +relationship: RO:0002298 UBERON:0004126 ! results in morphogenesis of trabecular layer of ventricle created_by: dph creation_date: 2009-10-13T10:33:00Z @@ -42180,8 +42250,8 @@ namespace: biological_process def: "The process in which the anatomical structures of the compact cardiac ventricle muscle are generated and organized." [GOC:mtg_heart] is_a: GO:0055010 ! ventricular cardiac muscle tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004127 ! compact layer of ventricle -relationship: results_in_morphogenesis_of UBERON:0004127 ! compact layer of ventricle +intersection_of: RO:0002298 UBERON:0004127 ! results in morphogenesis of compact layer of ventricle +relationship: RO:0002298 UBERON:0004127 ! results in morphogenesis of compact layer of ventricle created_by: dph creation_date: 2009-10-13T10:34:21Z @@ -42193,8 +42263,8 @@ def: "The process in which the anatomical structures of cardiac left ventricular is_a: GO:0003220 ! left ventricular cardiac muscle tissue morphogenesis is_a: GO:0003223 ! ventricular compact myocardium morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005063 ! left ventricular compact myocardium -relationship: results_in_morphogenesis_of UBERON:0005063 ! left ventricular compact myocardium +intersection_of: RO:0002298 UBERON:0005063 ! results in morphogenesis of left ventricular compact myocardium +relationship: RO:0002298 UBERON:0005063 ! results in morphogenesis of left ventricular compact myocardium created_by: dph creation_date: 2009-10-13T10:43:36Z @@ -42206,8 +42276,8 @@ def: "The process in which the anatomical structures of cardiac left ventricular is_a: GO:0003220 ! left ventricular cardiac muscle tissue morphogenesis is_a: GO:0003222 ! ventricular trabecula myocardium morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005064 ! left ventricular trabecular myocardium -relationship: results_in_morphogenesis_of UBERON:0005064 ! left ventricular trabecular myocardium +intersection_of: RO:0002298 UBERON:0005064 ! results in morphogenesis of left ventricular trabecular myocardium +relationship: RO:0002298 UBERON:0005064 ! results in morphogenesis of left ventricular trabecular myocardium created_by: dph creation_date: 2009-10-13T10:45:09Z @@ -42219,8 +42289,8 @@ def: "The process in which the anatomical structures of the right ventricular co is_a: GO:0003221 ! right ventricular cardiac muscle tissue morphogenesis is_a: GO:0003223 ! ventricular compact myocardium morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005065 ! right ventricular compact myocardium -relationship: results_in_morphogenesis_of UBERON:0005065 ! right ventricular compact myocardium +intersection_of: RO:0002298 UBERON:0005065 ! results in morphogenesis of right ventricular compact myocardium +relationship: RO:0002298 UBERON:0005065 ! results in morphogenesis of right ventricular compact myocardium created_by: dph creation_date: 2009-10-13T10:48:42Z @@ -42232,8 +42302,8 @@ def: "The process in which the anatomical structures of the right ventricular my is_a: GO:0003221 ! right ventricular cardiac muscle tissue morphogenesis is_a: GO:0003222 ! ventricular trabecula myocardium morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005066 ! right ventricular trabecular myocardium -relationship: results_in_morphogenesis_of UBERON:0005066 ! right ventricular trabecular myocardium +intersection_of: RO:0002298 UBERON:0005066 ! results in morphogenesis of right ventricular trabecular myocardium +relationship: RO:0002298 UBERON:0005066 ! results in morphogenesis of right ventricular trabecular myocardium created_by: dph creation_date: 2009-10-13T10:50:59Z @@ -42245,8 +42315,8 @@ def: "The process whose specific outcome is the progression of cardiac muscle of synonym: "atrial myocardium development" EXACT [GOC:mtg_heart] is_a: GO:0048738 ! cardiac muscle tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004490 ! cardiac muscle tissue of atrium -relationship: results_in_development_of UBERON:0004490 ! cardiac muscle tissue of atrium +intersection_of: RO:0002296 UBERON:0004490 ! results in development of cardiac muscle tissue of atrium +relationship: RO:0002296 UBERON:0004490 ! results in development of cardiac muscle tissue of atrium property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22614" xsd:anyURI created_by: dph creation_date: 2009-10-13T10:53:18Z @@ -42259,8 +42329,8 @@ def: "The process whose specific outcome is the progression of ventricular cardi synonym: "ventricular myocardium development" EXACT [GOC:mtg_heart] is_a: GO:0048738 ! cardiac muscle tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0018649 ! cardiac muscle tissue of ventricle -relationship: results_in_development_of UBERON:0018649 ! cardiac muscle tissue of ventricle +intersection_of: RO:0002296 UBERON:0018649 ! results in development of cardiac muscle tissue of ventricle +relationship: RO:0002296 UBERON:0018649 ! results in development of cardiac muscle tissue of ventricle created_by: dph creation_date: 2009-10-13T10:56:01Z @@ -42271,8 +42341,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a cardiac atrium over time, from its formation to the mature structure. A cardiac atrium receives blood from a vein and pumps it to a cardiac ventricle." [GOC:mtg_heart] is_a: GO:0003205 ! cardiac chamber development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002081 ! cardiac atrium -relationship: results_in_development_of UBERON:0002081 ! cardiac atrium +intersection_of: RO:0002296 UBERON:0002081 ! results in development of cardiac atrium +relationship: RO:0002296 UBERON:0002081 ! results in development of cardiac atrium created_by: dph creation_date: 2009-10-13T11:02:07Z @@ -42283,8 +42353,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a cardiac ventricle over time, from its formation to the mature structure. A cardiac ventricle receives blood from a cardiac atrium and pumps it out of the heart." [GOC:mtg_heart] is_a: GO:0003205 ! cardiac chamber development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002082 ! cardiac ventricle -relationship: results_in_development_of UBERON:0002082 ! cardiac ventricle +intersection_of: RO:0002296 UBERON:0002082 ! results in development of cardiac ventricle +relationship: RO:0002296 UBERON:0002082 ! results in development of cardiac ventricle created_by: dph creation_date: 2009-10-13T11:03:16Z @@ -42295,8 +42365,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the bulbus arteriosus over time, from its formation to the mature structure. The bulbus arteriosus is an elastic heart chamber." [GOC:mtg_heart] is_a: GO:0003205 ! cardiac chamber development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004152 ! bulbus arteriosus -relationship: results_in_development_of UBERON:0004152 ! bulbus arteriosus +intersection_of: RO:0002296 UBERON:0004152 ! results in development of bulbus arteriosus +relationship: RO:0002296 UBERON:0004152 ! results in development of bulbus arteriosus created_by: dph creation_date: 2009-10-13T11:05:36Z @@ -42307,9 +42377,9 @@ namespace: biological_process def: "The process in which the bulbus arteriosus is generated and organized. The bulbus arteriosus is an elastic cardiac chamber." [GOC:mtg_heart] is_a: GO:0003206 ! cardiac chamber morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004152 ! bulbus arteriosus +intersection_of: RO:0002298 UBERON:0004152 ! results in morphogenesis of bulbus arteriosus relationship: part_of GO:0003232 ! bulbus arteriosus development -relationship: results_in_morphogenesis_of UBERON:0004152 ! bulbus arteriosus +relationship: RO:0002298 UBERON:0004152 ! results in morphogenesis of bulbus arteriosus created_by: dph creation_date: 2009-10-13T11:07:30Z @@ -42320,9 +42390,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of the bulbus arteriosus from unspecified parts. The bulbus arteriosus is an elastic chamber of the heart." [GOC:mtg_heart] is_a: GO:0003207 ! cardiac chamber formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0004152 ! bulbus arteriosus +intersection_of: RO:0002297 UBERON:0004152 ! results in formation of anatomical entity bulbus arteriosus relationship: part_of GO:0003233 ! bulbus arteriosus morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0004152 ! bulbus arteriosus +relationship: RO:0002297 UBERON:0004152 ! results in formation of anatomical entity bulbus arteriosus created_by: dph creation_date: 2009-10-13T11:10:02Z @@ -42333,8 +42403,8 @@ namespace: biological_process def: "The progression of the sinus venosus over time, from its formation to the mature structure. The sinus venosus is a heart chamber attached to the atrium on the venous side of the embryonic heart." [GOC:mtg_heart] is_a: GO:0003205 ! cardiac chamber development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002063 ! sinus venosus -relationship: results_in_development_of UBERON:0002063 ! sinus venosus +intersection_of: RO:0002296 UBERON:0002063 ! results in development of sinus venosus +relationship: RO:0002296 UBERON:0002063 ! results in development of sinus venosus created_by: dph creation_date: 2009-10-13T11:12:34Z @@ -42345,9 +42415,9 @@ namespace: biological_process def: "The process in which the sinus venosus is generated and organized. The sinus venosus is a heart chamber attached to the atrium on the venous side of the embryonic heart." [GOC:mtg_heart] is_a: GO:0003206 ! cardiac chamber morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002063 ! sinus venosus +intersection_of: RO:0002298 UBERON:0002063 ! results in morphogenesis of sinus venosus relationship: part_of GO:0003235 ! sinus venosus development -relationship: results_in_morphogenesis_of UBERON:0002063 ! sinus venosus +relationship: RO:0002298 UBERON:0002063 ! results in morphogenesis of sinus venosus created_by: dph creation_date: 2009-10-13T11:16:52Z @@ -42358,9 +42428,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of the sinus venosus from unspecified parts. The sinus venosus is a heart chamber attached to the atrium on the venous side of the embryonic heart." [GOC:mtg_heart] is_a: GO:0003207 ! cardiac chamber formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002063 ! sinus venosus +intersection_of: RO:0002297 UBERON:0002063 ! results in formation of anatomical entity sinus venosus relationship: part_of GO:0003236 ! sinus venosus morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002063 ! sinus venosus +relationship: RO:0002297 UBERON:0002063 ! results in formation of anatomical entity sinus venosus created_by: dph creation_date: 2009-10-13T11:18:34Z @@ -42371,8 +42441,8 @@ namespace: biological_process def: "The progression of the conus arteriosus over time, from its formation to the mature structure. The conus arteriosus is a valved chamber with thick muscular walls stemming from the ventricle and connecting to the pulmonary trunk." [GOC:mtg_heart] is_a: GO:0003205 ! cardiac chamber development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003983 ! conus arteriosus -relationship: results_in_development_of UBERON:0003983 ! conus arteriosus +intersection_of: RO:0002296 UBERON:0003983 ! results in development of conus arteriosus +relationship: RO:0002296 UBERON:0003983 ! results in development of conus arteriosus created_by: dph creation_date: 2009-10-13T11:20:57Z @@ -42383,9 +42453,9 @@ namespace: biological_process def: "The process in which the conus arteriosus is generated and organized. The conus arteriosus is a valved chamber with thick muscular walls stemming from the ventricle and connecting to the pulmonary trunk." [GOC:mtg_heart] is_a: GO:0003206 ! cardiac chamber morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003983 ! conus arteriosus +intersection_of: RO:0002298 UBERON:0003983 ! results in morphogenesis of conus arteriosus relationship: part_of GO:0003238 ! conus arteriosus development -relationship: results_in_morphogenesis_of UBERON:0003983 ! conus arteriosus +relationship: RO:0002298 UBERON:0003983 ! results in morphogenesis of conus arteriosus created_by: dph creation_date: 2009-10-13T11:25:04Z @@ -42396,9 +42466,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of the conus arteriosus from unspecified parts. The conus arteriosus is a valved chamber with thick muscular walls stemming from the ventricle and connecting to the pulmonary trunk." [GOC:mtg_heart] is_a: GO:0003207 ! cardiac chamber formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003983 ! conus arteriosus +intersection_of: RO:0002297 UBERON:0003983 ! results in formation of anatomical entity conus arteriosus relationship: part_of GO:0003239 ! conus arteriosus morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0003983 ! conus arteriosus +relationship: RO:0002297 UBERON:0003983 ! results in formation of anatomical entity conus arteriosus created_by: dph creation_date: 2009-10-13T11:25:47Z @@ -42436,10 +42506,10 @@ namespace: biological_process def: "The increase in heart capillaries that accompanies physiological hypertrophy of cardiac muscle." [GOC:mtg_heart] is_a: GO:0048589 ! developmental growth intersection_of: GO:0048589 ! developmental growth -intersection_of: results_in_growth_of UBERON:0006966 ! coronary capillary +intersection_of: RO:0002343 UBERON:0006966 ! results in growth of coronary capillary relationship: part_of GO:0060419 ! heart growth relationship: part_of GO:0060976 ! coronary vasculature development -relationship: results_in_growth_of UBERON:0006966 ! coronary capillary +relationship: RO:0002343 UBERON:0006966 ! results in growth of coronary capillary created_by: dph creation_date: 2009-10-13T11:53:12Z @@ -42463,8 +42533,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency or extent of cell proliferation that contributes to the shaping of a heart valve." [GOC:mtg_heart] is_a: GO:2000136 ! regulation of cell proliferation involved in heart morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003249 ! cell proliferation involved in heart valve morphogenesis -relationship: regulates GO:0003249 ! cell proliferation involved in heart valve morphogenesis +intersection_of: RO:0002211 GO:0003249 ! regulates (processual) cell proliferation involved in heart valve morphogenesis +relationship: RO:0002211 GO:0003249 ! regulates (processual) cell proliferation involved in heart valve morphogenesis created_by: dph creation_date: 2009-10-13T02:03:42Z @@ -42476,8 +42546,8 @@ def: "Any process that increases the rate, frequency or extent of cell prolifera is_a: GO:0003250 ! regulation of cell proliferation involved in heart valve morphogenesis is_a: GO:2000138 ! positive regulation of cell proliferation involved in heart morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003249 ! cell proliferation involved in heart valve morphogenesis -relationship: positively_regulates GO:0003249 ! cell proliferation involved in heart valve morphogenesis +intersection_of: RO:0002213 GO:0003249 ! positively regulates cell proliferation involved in heart valve morphogenesis +relationship: RO:0002213 GO:0003249 ! positively regulates cell proliferation involved in heart valve morphogenesis created_by: dph creation_date: 2009-10-13T02:07:20Z @@ -42489,8 +42559,8 @@ def: "Any process that decreases the rate, frequency or extent of cell prolifera is_a: GO:0003250 ! regulation of cell proliferation involved in heart valve morphogenesis is_a: GO:2000137 ! negative regulation of cell proliferation involved in heart morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003249 ! cell proliferation involved in heart valve morphogenesis -relationship: negatively_regulates GO:0003249 ! cell proliferation involved in heart valve morphogenesis +intersection_of: RO:0002212 GO:0003249 ! negatively regulates cell proliferation involved in heart valve morphogenesis +relationship: RO:0002212 GO:0003249 ! negatively regulates cell proliferation involved in heart valve morphogenesis created_by: dph creation_date: 2009-10-13T02:10:39Z @@ -42515,9 +42585,9 @@ namespace: biological_process def: "The orderly movement of a cardiac progenitor cell to form the heart field. Cardiac progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into cells of the heart. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." [GOC:mtg_heart] is_a: GO:0060974 ! cell migration involved in heart formation intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0002664 ! cardioblast +intersection_of: RO:0002565 CL:0002664 ! results in movement of cardioblast relationship: part_of GO:0060914 ! heart formation -relationship: results_in_movement_of CL:0002664 ! cardioblast +relationship: RO:0002565 CL:0002664 ! results in movement of cardioblast created_by: dph creation_date: 2009-10-15T01:52:25Z @@ -42528,9 +42598,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of an endocardial cushion. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves." [GOC:mtg_heart, PMID:15797462] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002062 ! endocardial cushion +intersection_of: RO:0002297 UBERON:0002062 ! results in formation of anatomical entity endocardial cushion relationship: part_of GO:0003203 ! endocardial cushion morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002062 ! endocardial cushion +relationship: RO:0002297 UBERON:0002062 ! results in formation of anatomical entity endocardial cushion created_by: dph creation_date: 2009-10-20T08:53:19Z @@ -42606,9 +42676,9 @@ def: "The progression of a cardiac septum over time, from its initial formation synonym: "heart septum development" EXACT [GOC:mtg_heart] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002099 ! cardiac septum +intersection_of: RO:0002296 UBERON:0002099 ! results in development of cardiac septum relationship: part_of GO:0003205 ! cardiac chamber development -relationship: results_in_development_of UBERON:0002099 ! cardiac septum +relationship: RO:0002296 UBERON:0002099 ! results in development of cardiac septum created_by: dph creation_date: 2009-10-20T09:45:13Z @@ -42621,9 +42691,9 @@ synonym: "interventricular septum development" EXACT [GOC:mtg_heart] synonym: "septum inferius development" NARROW [GOC:mtg_heart] is_a: GO:0003279 ! cardiac septum development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002094 ! interventricular septum +intersection_of: RO:0002296 UBERON:0002094 ! results in development of interventricular septum relationship: part_of GO:0003231 ! cardiac ventricle development -relationship: results_in_development_of UBERON:0002094 ! interventricular septum +relationship: RO:0002296 UBERON:0002094 ! results in development of interventricular septum created_by: dph creation_date: 2009-10-20T10:04:51Z @@ -42634,8 +42704,8 @@ namespace: biological_process def: "The progression of the ventricular septum intermedium over time, from its formation to the mature structure." [GOC:mtg_heart] is_a: GO:0003281 ! ventricular septum development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004153 ! ventricular septum intermedium -relationship: results_in_development_of UBERON:0004153 ! ventricular septum intermedium +intersection_of: RO:0002296 UBERON:0004153 ! results in development of ventricular septum intermedium +relationship: RO:0002296 UBERON:0004153 ! results in development of ventricular septum intermedium created_by: dph creation_date: 2009-10-20T10:09:53Z @@ -42646,9 +42716,9 @@ namespace: biological_process def: "The progression of the atrial septum over time, from its initial formation to the mature structure." [GOC:mtg_heart] is_a: GO:0003279 ! cardiac septum development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002085 ! interatrial septum +intersection_of: RO:0002296 UBERON:0002085 ! results in development of interatrial septum relationship: part_of GO:0003230 ! cardiac atrium development -relationship: results_in_development_of UBERON:0002085 ! interatrial septum +relationship: RO:0002296 UBERON:0002085 ! results in development of interatrial septum created_by: dph creation_date: 2009-10-20T10:10:38Z @@ -42659,8 +42729,8 @@ namespace: biological_process def: "The progression of the septum primum over time, from its formation to the mature structure." [GOC:mtg_heart] is_a: GO:0003283 ! atrial septum development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004154 ! atrial septum primum -relationship: results_in_development_of UBERON:0004154 ! atrial septum primum +intersection_of: RO:0002296 UBERON:0004154 ! results in development of atrial septum primum +relationship: RO:0002296 UBERON:0004154 ! results in development of atrial septum primum created_by: dph creation_date: 2009-10-20T10:12:26Z @@ -42671,8 +42741,8 @@ namespace: biological_process def: "The progression of the septum secundum over time, from its initial formation to the mature structure." [GOC:mtg_heart] is_a: GO:0003283 ! atrial septum development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004155 ! atrial septum secundum -relationship: results_in_development_of UBERON:0004155 ! atrial septum secundum +intersection_of: RO:0002296 UBERON:0004155 ! results in development of atrial septum secundum +relationship: RO:0002296 UBERON:0004155 ! results in development of atrial septum secundum created_by: dph creation_date: 2009-10-20T10:21:13Z @@ -42683,8 +42753,8 @@ namespace: biological_process def: "The progression of the atrial septum intermedium over time, from its formation to the mature structure." [GOC:mtg_heart] is_a: GO:0003283 ! atrial septum development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004159 ! atrial septum intermedium -relationship: results_in_development_of UBERON:0004159 ! atrial septum intermedium +intersection_of: RO:0002296 UBERON:0004159 ! results in development of atrial septum intermedium +relationship: RO:0002296 UBERON:0004159 ! results in development of atrial septum intermedium created_by: dph creation_date: 2009-10-20T10:23:52Z @@ -42695,8 +42765,8 @@ namespace: biological_process def: "The developmental process in which a ventricular septum intermedium is generated and organized." [GOC:mtg_heart] is_a: GO:0060412 ! ventricular septum morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004153 ! ventricular septum intermedium -relationship: results_in_morphogenesis_of UBERON:0004153 ! ventricular septum intermedium +intersection_of: RO:0002298 UBERON:0004153 ! results in morphogenesis of ventricular septum intermedium +relationship: RO:0002298 UBERON:0004153 ! results in morphogenesis of ventricular septum intermedium created_by: dph creation_date: 2009-10-20T10:58:48Z @@ -42707,9 +42777,9 @@ namespace: biological_process def: "The process in which anatomical structure of an atrial septum primum is generated and organized." [GOC:mtg_heart] is_a: GO:0060413 ! atrial septum morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004154 ! atrial septum primum +intersection_of: RO:0002298 UBERON:0004154 ! results in morphogenesis of atrial septum primum relationship: part_of GO:0003284 ! septum primum development -relationship: results_in_morphogenesis_of UBERON:0004154 ! atrial septum primum +relationship: RO:0002298 UBERON:0004154 ! results in morphogenesis of atrial septum primum created_by: dph creation_date: 2009-10-20T10:32:32Z @@ -42720,9 +42790,9 @@ namespace: biological_process def: "The process in which anatomical structure of an atrial septum secundum is generated and organized." [GOC:mtg_heart] is_a: GO:0060413 ! atrial septum morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004155 ! atrial septum secundum +intersection_of: RO:0002298 UBERON:0004155 ! results in morphogenesis of atrial septum secundum relationship: part_of GO:0003285 ! septum secundum development -relationship: results_in_morphogenesis_of UBERON:0004155 ! atrial septum secundum +relationship: RO:0002298 UBERON:0004155 ! results in morphogenesis of atrial septum secundum created_by: dph creation_date: 2009-10-20T10:33:57Z @@ -42733,9 +42803,9 @@ namespace: biological_process def: "The process in which anatomical structure of an atrial septum intermedium is generated and organized." [GOC:mtg_heart] is_a: GO:0060413 ! atrial septum morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004159 ! atrial septum intermedium +intersection_of: RO:0002298 UBERON:0004159 ! results in morphogenesis of atrial septum intermedium relationship: part_of GO:0003286 ! atrial septum intermedium development -relationship: results_in_morphogenesis_of UBERON:0004159 ! atrial septum intermedium +relationship: RO:0002298 UBERON:0004159 ! results in morphogenesis of atrial septum intermedium created_by: dph creation_date: 2009-10-20T10:35:04Z @@ -42746,9 +42816,9 @@ namespace: biological_process def: "The process in which an endocardial cushion cell becomes a cell of a cardiac septum." [GOC:mtg_heart] is_a: GO:0035051 ! cardiocyte differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:2000022 ! cardiac septum cell +intersection_of: RO:0002315 CL:2000022 ! results in acquisition of features of cardiac septum cell relationship: part_of GO:0003279 ! cardiac septum development -relationship: results_in_acquisition_of_features_of CL:2000022 ! cardiac septum cell +relationship: RO:0002315 CL:2000022 ! results in acquisition of features of cardiac septum cell created_by: dph creation_date: 2009-10-20T11:03:46Z @@ -42759,9 +42829,9 @@ namespace: biological_process def: "The process in which an endocardial cushion cell give rise to a cell that is part of a heart valve." [GOC:mtg_heart] is_a: GO:0035051 ! cardiocyte differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000147 ! cardiac valve cell +intersection_of: RO:0002315 CL:1000147 ! results in acquisition of features of cardiac valve cell relationship: part_of GO:0003170 ! heart valve development -relationship: results_in_acquisition_of_features_of CL:1000147 ! cardiac valve cell +relationship: RO:0002315 CL:1000147 ! results in acquisition of features of cardiac valve cell created_by: dph creation_date: 2009-10-20T11:06:46Z @@ -42803,9 +42873,9 @@ synonym: "pancreatic B cell differentiation" EXACT [GOC:mah] synonym: "pancreatic beta cell differentiation" EXACT [GOC:dph] is_a: GO:0035883 ! enteroendocrine cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000169 ! type B pancreatic cell +intersection_of: RO:0002315 CL:0000169 ! results in acquisition of features of type B pancreatic cell relationship: part_of GO:0031018 ! endocrine pancreas development -relationship: results_in_acquisition_of_features_of CL:0000169 ! type B pancreatic cell +relationship: RO:0002315 CL:0000169 ! results in acquisition of features of type B pancreatic cell created_by: dph creation_date: 2009-10-26T09:27:23Z @@ -42817,9 +42887,9 @@ def: "The process in which relatively unspecialized cells acquire specialized st synonym: "pancreatic alpha cell differentiation" EXACT [GOC:dph] is_a: GO:0035883 ! enteroendocrine cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000171 ! pancreatic A cell +intersection_of: RO:0002315 CL:0000171 ! results in acquisition of features of pancreatic A cell relationship: part_of GO:0031018 ! endocrine pancreas development -relationship: results_in_acquisition_of_features_of CL:0000171 ! pancreatic A cell +relationship: RO:0002315 CL:0000171 ! results in acquisition of features of pancreatic A cell created_by: dph creation_date: 2009-10-26T09:28:05Z @@ -42831,9 +42901,9 @@ def: "The process in which relatively unspecialized cells acquire specialized st synonym: "pancreatic delta cell differentiation" EXACT [GOC:dph] is_a: GO:0035883 ! enteroendocrine cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000173 ! pancreatic D cell +intersection_of: RO:0002315 CL:0000173 ! results in acquisition of features of pancreatic D cell relationship: part_of GO:0031018 ! endocrine pancreas development -relationship: results_in_acquisition_of_features_of CL:0000173 ! pancreatic D cell +relationship: RO:0002315 CL:0000173 ! results in acquisition of features of pancreatic D cell created_by: dph creation_date: 2009-10-26T09:30:27Z @@ -42845,9 +42915,9 @@ def: "The process in which relatively unspecialized cells acquire specialized st synonym: "pancreatic polypeptide-producing cell differentiation" EXACT [GOC:dph] is_a: GO:0035883 ! enteroendocrine cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002275 ! pancreatic PP cell +intersection_of: RO:0002315 CL:0002275 ! results in acquisition of features of pancreatic PP cell relationship: part_of GO:0031018 ! endocrine pancreas development -relationship: results_in_acquisition_of_features_of CL:0002275 ! pancreatic PP cell +relationship: RO:0002315 CL:0002275 ! results in acquisition of features of pancreatic PP cell created_by: dph creation_date: 2009-10-26T09:32:32Z @@ -42859,9 +42929,9 @@ def: "The progression of the heart rudiment over time, from its initial formatio synonym: "heart cone development" EXACT [GOC:mtg_heart] is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004291 ! heart rudiment +intersection_of: RO:0002296 UBERON:0004291 ! results in development of heart rudiment relationship: part_of GO:0035050 ! embryonic heart tube development -relationship: results_in_development_of UBERON:0004291 ! heart rudiment +relationship: RO:0002296 UBERON:0004291 ! results in development of heart rudiment created_by: dph creation_date: 2009-10-27T08:32:40Z @@ -42874,9 +42944,11 @@ synonym: "heart cone morphogenesis" EXACT [GOC:mtg_heart] is_a: GO:0002009 ! morphogenesis of an epithelium is_a: GO:0048598 ! embryonic morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004291 ! heart rudiment +intersection_of: RO:0002298 UBERON:0004291 ! results in morphogenesis of heart rudiment +relationship: part_of GO:0003007 ! heart morphogenesis relationship: part_of GO:0003313 ! heart rudiment development -relationship: results_in_morphogenesis_of UBERON:0004291 ! heart rudiment +relationship: RO:0002298 UBERON:0004291 ! results in morphogenesis of heart rudiment +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22938" xsd:anyURI created_by: dph creation_date: 2009-10-27T08:38:04Z @@ -42888,9 +42960,9 @@ def: "The developmental process pertaining to the initial formation of the heart synonym: "heart cone formation" EXACT [GOC:mtg_heart] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0004291 ! heart rudiment +intersection_of: RO:0002297 UBERON:0004291 ! results in formation of anatomical entity heart rudiment relationship: part_of GO:0003314 ! heart rudiment morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0004291 ! heart rudiment +relationship: RO:0002297 UBERON:0004291 ! results in formation of anatomical entity heart rudiment created_by: dph creation_date: 2009-10-27T08:43:37Z @@ -42902,9 +42974,9 @@ def: "The process whose specific outcome is the progression of a pancreatic A ce synonym: "pancreatic alpha cell development" EXACT [GOC:dph] is_a: GO:0002068 ! glandular epithelial cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000171 ! pancreatic A cell +intersection_of: RO:0002296 CL:0000171 ! results in development of pancreatic A cell relationship: part_of GO:0003310 ! pancreatic A cell differentiation -relationship: results_in_development_of CL:0000171 ! pancreatic A cell +relationship: RO:0002296 CL:0000171 ! results in development of pancreatic A cell created_by: dph creation_date: 2009-11-02T08:13:55Z @@ -42917,9 +42989,9 @@ synonym: "pancreatic B cell development" EXACT [GOC:mah] synonym: "pancreatic beta cell development" EXACT [GOC:dph] is_a: GO:0002068 ! glandular epithelial cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000169 ! type B pancreatic cell +intersection_of: RO:0002296 CL:0000169 ! results in development of type B pancreatic cell relationship: part_of GO:0003309 ! type B pancreatic cell differentiation -relationship: results_in_development_of CL:0000169 ! type B pancreatic cell +relationship: RO:0002296 CL:0000169 ! results in development of type B pancreatic cell created_by: dph creation_date: 2009-11-02T08:20:11Z @@ -42931,9 +43003,9 @@ def: "The process whose specific outcome is the progression of a pancreatic delt synonym: "pancreatic delta cell development" EXACT [GOC:dph] is_a: GO:0002068 ! glandular epithelial cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000173 ! pancreatic D cell +intersection_of: RO:0002296 CL:0000173 ! results in development of pancreatic D cell relationship: part_of GO:0003311 ! pancreatic D cell differentiation -relationship: results_in_development_of CL:0000173 ! pancreatic D cell +relationship: RO:0002296 CL:0000173 ! results in development of pancreatic D cell created_by: dph creation_date: 2009-11-02T08:23:26Z @@ -42944,9 +43016,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a pancreatic PP cell over time, from its formation to the mature structure. A pancreatic polypeptide-producing cell is a cell in the pancreas that produces pancreatic polypeptide." [GOC:dph] is_a: GO:0002068 ! glandular epithelial cell development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:0002275 ! pancreatic PP cell +intersection_of: RO:0002296 CL:0002275 ! results in development of pancreatic PP cell relationship: part_of GO:0003312 ! pancreatic PP cell differentiation -relationship: results_in_development_of CL:0002275 ! pancreatic PP cell +relationship: RO:0002296 CL:0002275 ! results in development of pancreatic PP cell created_by: dph creation_date: 2009-11-02T08:25:03Z @@ -42958,8 +43030,8 @@ def: "Any process that modulates the rate, frequency, or extent of the controlle is_a: GO:1903053 ! regulation of extracellular matrix organization is_a: GO:1903530 ! regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070278 ! extracellular matrix constituent secretion -relationship: regulates GO:0070278 ! extracellular matrix constituent secretion +intersection_of: RO:0002211 GO:0070278 ! regulates (processual) extracellular matrix constituent secretion +relationship: RO:0002211 GO:0070278 ! regulates (processual) extracellular matrix constituent secretion created_by: dph creation_date: 2009-11-02T02:07:40Z @@ -42972,8 +43044,8 @@ is_a: GO:0003330 ! regulation of extracellular matrix constituent secretion is_a: GO:1903055 ! positive regulation of extracellular matrix organization is_a: GO:1903532 ! positive regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070278 ! extracellular matrix constituent secretion -relationship: positively_regulates GO:0070278 ! extracellular matrix constituent secretion +intersection_of: RO:0002213 GO:0070278 ! positively regulates extracellular matrix constituent secretion +relationship: RO:0002213 GO:0070278 ! positively regulates extracellular matrix constituent secretion created_by: dph creation_date: 2009-11-02T02:11:22Z @@ -42986,8 +43058,8 @@ is_a: GO:0003330 ! regulation of extracellular matrix constituent secretion is_a: GO:1903054 ! negative regulation of extracellular matrix organization is_a: GO:1903531 ! negative regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070278 ! extracellular matrix constituent secretion -relationship: negatively_regulates GO:0070278 ! extracellular matrix constituent secretion +intersection_of: RO:0002212 GO:0070278 ! negatively regulates extracellular matrix constituent secretion +relationship: RO:0002212 GO:0070278 ! negatively regulates extracellular matrix constituent secretion created_by: dph creation_date: 2009-11-02T02:13:49Z @@ -43001,10 +43073,10 @@ synonym: "amino acid membrane transport" EXACT [] is_a: GO:0006865 ! amino acid transport is_a: GO:0055085 ! transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:35238 ! amino acid zwitterion -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion created_by: dph creation_date: 2009-11-02T02:36:11Z @@ -43015,9 +43087,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a keratinocyte over time, from its formation to the mature structure." [GOC:dph] is_a: GO:0002064 ! epithelial cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000312 ! keratinocyte +intersection_of: RO:0002296 CL:0000312 ! results in development of keratinocyte relationship: part_of GO:0030216 ! keratinocyte differentiation -relationship: results_in_development_of CL:0000312 ! keratinocyte +relationship: RO:0002296 CL:0000312 ! results in development of keratinocyte created_by: dph creation_date: 2009-11-24T08:55:57Z @@ -43028,9 +43100,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the corneocyte over time, from its formation to the mature structure. A corneocyte is the last stage of development of a keratinocyte where the keratinocyte flattens, loses its nucleus and eventually delaminates from the epidermis." [GOC:dph] is_a: GO:0048468 ! cell development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of CL:0002153 ! corneocyte +intersection_of: RO:0002296 CL:0002153 ! results in development of corneocyte relationship: part_of GO:0003334 ! keratinocyte development -relationship: results_in_development_of CL:0002153 ! corneocyte +relationship: RO:0002296 CL:0002153 ! results in development of corneocyte created_by: dph creation_date: 2009-11-24T09:01:02Z @@ -43057,9 +43129,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the metanephros are generated and organized." [GOC:dph, GOC:yaf] is_a: GO:0060993 ! kidney morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000081 ! metanephros +intersection_of: RO:0002298 UBERON:0000081 ! results in morphogenesis of metanephros relationship: part_of GO:0001656 ! metanephros development -relationship: results_in_morphogenesis_of UBERON:0000081 ! metanephros +relationship: RO:0002298 UBERON:0000081 ! results in morphogenesis of metanephros created_by: dph creation_date: 2009-11-24T09:32:09Z @@ -43070,8 +43142,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency or extent of the transition where a mesenchymal cell establishes apical/basolateral polarity,forms intercellular adhesive junctions, synthesizes basement membrane components and becomes an epithelial cell that will contribute to the shaping of the metanephros." [GOC:dph] is_a: GO:2000696 ! regulation of epithelial cell differentiation involved in kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003337 ! mesenchymal to epithelial transition involved in metanephros morphogenesis -relationship: regulates GO:0003337 ! mesenchymal to epithelial transition involved in metanephros morphogenesis +intersection_of: RO:0002211 GO:0003337 ! regulates (processual) mesenchymal to epithelial transition involved in metanephros morphogenesis +relationship: RO:0002211 GO:0003337 ! regulates (processual) mesenchymal to epithelial transition involved in metanephros morphogenesis created_by: dph creation_date: 2009-11-24T09:43:04Z @@ -43083,8 +43155,8 @@ def: "Any process that decreases the rate, frequency or extent of the transition is_a: GO:0003339 ! regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis is_a: GO:2000697 ! negative regulation of epithelial cell differentiation involved in kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003337 ! mesenchymal to epithelial transition involved in metanephros morphogenesis -relationship: negatively_regulates GO:0003337 ! mesenchymal to epithelial transition involved in metanephros morphogenesis +intersection_of: RO:0002212 GO:0003337 ! negatively regulates mesenchymal to epithelial transition involved in metanephros morphogenesis +relationship: RO:0002212 GO:0003337 ! negatively regulates mesenchymal to epithelial transition involved in metanephros morphogenesis created_by: dph creation_date: 2009-11-24T09:46:12Z @@ -43103,8 +43175,8 @@ synonym: "flagellum movement" NARROW [] synonym: "microtubule-based flagellum movement" EXACT [] is_a: GO:0007018 ! microtubule-based movement intersection_of: GO:0007018 ! microtubule-based movement -intersection_of: process_has_causal_agent GO:0005874 ! microtubule -intersection_of: results_in_movement_of GO:0005929 ! cilium +intersection_of: RO:0002565 GO:0005929 ! results in movement of cilium +intersection_of: RO:0002608 GO:0005874 ! process has causal agent microtubule relationship: in_taxon NCBITaxon:2759 {all_only="true"} ! Eukaryota relationship: never_in_taxon NCBITaxon:3176 ! Zygnematales relationship: never_in_taxon NCBITaxon:3312 ! Coniferophyta @@ -43112,9 +43184,9 @@ relationship: never_in_taxon NCBITaxon:3378 ! Gnetales relationship: never_in_taxon NCBITaxon:3398 ! Magnoliopsida relationship: never_in_taxon NCBITaxon:4890 ! Ascomycota relationship: never_in_taxon NCBITaxon:5782 ! Dictyostelium -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota -relationship: process_has_causal_agent GO:0005874 ! microtubule -relationship: results_in_movement_of GO:0005929 ! cilium +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota +relationship: RO:0002565 GO:0005929 ! results in movement of cilium +relationship: RO:0002608 GO:0005874 ! process has causal agent microtubule property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19809" xsd:anyURI created_by: dph creation_date: 2009-11-24T09:56:26Z @@ -43126,9 +43198,9 @@ namespace: biological_process def: "The progression of the proepicardium from its formation to the mature structure. The proepicardium is an outpouching of the septum transversum." [GOC:dph, PMID:18722343] is_a: GO:0060485 ! mesenchyme development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004160 ! proepicardium +intersection_of: RO:0002296 UBERON:0004160 ! results in development of proepicardium relationship: part_of GO:0003343 ! septum transversum development -relationship: results_in_development_of UBERON:0004160 ! proepicardium +relationship: RO:0002296 UBERON:0004160 ! results in development of proepicardium created_by: dph creation_date: 2009-12-01T10:30:17Z @@ -43139,8 +43211,8 @@ namespace: biological_process def: "The progression of the septum transversum from its initial formation to the mature structure. The septum transversum is a portion of the trunk mesenchyme." [GOC:dph, PMID:18722343] is_a: GO:0060485 ! mesenchyme development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004161 ! septum transversum -relationship: results_in_development_of UBERON:0004161 ! septum transversum +intersection_of: RO:0002296 UBERON:0004161 ! results in development of septum transversum +relationship: RO:0002296 UBERON:0004161 ! results in development of septum transversum created_by: dph creation_date: 2009-12-01T10:40:17Z @@ -43152,9 +43224,9 @@ def: "The process in which the anatomical structure of the pericardium is genera is_a: GO:0002011 ! morphogenesis of an epithelial sheet is_a: GO:0048598 ! embryonic morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002407 ! pericardium +intersection_of: RO:0002298 UBERON:0002407 ! results in morphogenesis of pericardium relationship: part_of GO:0060039 ! pericardium development -relationship: results_in_morphogenesis_of UBERON:0002407 ! pericardium +relationship: RO:0002298 UBERON:0002407 ! results in morphogenesis of pericardium created_by: dph creation_date: 2009-12-01T10:46:34Z @@ -43166,8 +43238,8 @@ def: "The process in which a relatively unspecialized cell acquires the speciali is_a: GO:0035051 ! cardiocyte differentiation is_a: GO:0045446 ! endothelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0010008 ! cardiac endothelial cell -relationship: results_in_acquisition_of_features_of CL:0010008 ! cardiac endothelial cell +intersection_of: RO:0002315 CL:0010008 ! results in acquisition of features of cardiac endothelial cell +relationship: RO:0002315 CL:0010008 ! results in acquisition of features of cardiac endothelial cell created_by: dph creation_date: 2009-12-01T11:12:05Z @@ -43178,9 +43250,9 @@ namespace: biological_process def: "The progression of the pulmonary myocardium over time, from its initial formation to the mature structure. The pulmonary myocardium is the myocardial tissue present in the pulmonary vein." [GOC:dph, PMID:17638577] is_a: GO:0014706 ! striated muscle tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004162 ! pulmonary myocardium +intersection_of: RO:0002296 UBERON:0004162 ! results in development of pulmonary myocardium relationship: part_of GO:0060841 ! venous blood vessel development -relationship: results_in_development_of UBERON:0004162 ! pulmonary myocardium +relationship: RO:0002296 UBERON:0004162 ! results in development of pulmonary myocardium created_by: dph creation_date: 2009-12-01T12:50:06Z @@ -43210,8 +43282,8 @@ synonym: "regulation of flagellum movement" RELATED [] synonym: "regulation of microtubule-based flagellum movement" EXACT [] is_a: GO:0060632 ! regulation of microtubule-based movement intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003341 ! cilium movement -relationship: regulates GO:0003341 ! cilium movement +intersection_of: RO:0002211 GO:0003341 ! regulates (processual) cilium movement +relationship: RO:0002211 GO:0003341 ! regulates (processual) cilium movement created_by: dph creation_date: 2009-12-03T10:12:00Z @@ -43228,8 +43300,8 @@ synonym: "positive regulation of microtubule-based flagellum movement" EXACT [] is_a: GO:0003352 ! regulation of cilium movement is_a: GO:0048522 ! positive regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003341 ! cilium movement -relationship: positively_regulates GO:0003341 ! cilium movement +intersection_of: RO:0002213 GO:0003341 ! positively regulates cilium movement +relationship: RO:0002213 GO:0003341 ! positively regulates cilium movement created_by: dph creation_date: 2009-12-03T10:16:10Z @@ -43245,8 +43317,8 @@ synonym: "negative regulation of microtubule-based flagellum movement" EXACT [] is_a: GO:0003352 ! regulation of cilium movement is_a: GO:0048523 ! negative regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003341 ! cilium movement -relationship: negatively_regulates GO:0003341 ! cilium movement +intersection_of: RO:0002212 GO:0003341 ! negatively regulates cilium movement +relationship: RO:0002212 GO:0003341 ! negatively regulates cilium movement created_by: dph creation_date: 2009-12-03T10:17:47Z @@ -43271,8 +43343,8 @@ def: "The process in which a relatively unspecialized cell acquires specialized synonym: "norepinephrine secreting neuron differentiation" EXACT [GOC:dph] is_a: GO:0030182 ! neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0008025 ! noradrenergic neuron -relationship: results_in_acquisition_of_features_of CL:0008025 ! noradrenergic neuron +intersection_of: RO:0002315 CL:0008025 ! results in acquisition of features of noradrenergic neuron +relationship: RO:0002315 CL:0008025 ! results in acquisition of features of noradrenergic neuron created_by: dph creation_date: 2009-12-03T10:34:30Z @@ -43284,9 +43356,9 @@ def: "The process whose specific outcome is the progression of a noradrenergic n synonym: "norepinephrine secreting neuron development" EXACT [GOC:dph] is_a: GO:0048666 ! neuron development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0008025 ! noradrenergic neuron +intersection_of: RO:0002296 CL:0008025 ! results in development of noradrenergic neuron relationship: part_of GO:0003357 ! noradrenergic neuron differentiation -relationship: results_in_development_of CL:0008025 ! noradrenergic neuron +relationship: RO:0002296 CL:0008025 ! results in development of noradrenergic neuron created_by: dph creation_date: 2009-12-03T10:38:37Z @@ -43297,8 +43369,8 @@ namespace: biological_process def: "The progression of the brainstem from its formation to the mature structure. The brainstem is the part of the brain that connects the brain with the spinal cord." [GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002298 ! brainstem -relationship: results_in_development_of UBERON:0002298 ! brainstem +intersection_of: RO:0002296 UBERON:0002298 ! results in development of brainstem +relationship: RO:0002296 UBERON:0002298 ! results in development of brainstem created_by: dph creation_date: 2009-12-03T10:47:20Z @@ -43384,9 +43456,9 @@ namespace: biological_process def: "The change in form that occurs when an epithelial cell progresses from its initial formation to its mature state." [GOC:ascb_2009, GOC:dph, GOC:tb] is_a: GO:0000902 ! cell morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_maturation_of CL:0000066 ! epithelial cell +intersection_of: RO:0002299 CL:0000066 ! results in maturation of epithelial cell relationship: part_of GO:0002064 ! epithelial cell development -relationship: results_in_maturation_of CL:0000066 ! epithelial cell +relationship: RO:0002299 CL:0000066 ! results in maturation of epithelial cell created_by: dph creation_date: 2009-12-09T07:21:06Z @@ -43397,8 +43469,8 @@ namespace: biological_process def: "The progression of the amphid sensory organ over time, from its formation to the mature structure. Amphid sensory organs are the sensory organs of nematodes." [GOC:ascb_2009, GOC:dph, GOC:tb] is_a: GO:0007423 ! sensory organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005067 ! amphid sensory organ -relationship: results_in_development_of UBERON:0005067 ! amphid sensory organ +intersection_of: RO:0002296 UBERON:0005067 ! results in development of amphid sensory organ +relationship: RO:0002296 UBERON:0005067 ! results in development of amphid sensory organ created_by: dph creation_date: 2009-12-09T09:09:20Z @@ -43446,10 +43518,10 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of the optic vesicle from the lateral wall of the forebrain. This process begins with the specific processes that contribute to the appearance of the vesicle and ends when the vesicle has evaginated. The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup." [GOC:ascb_2009, GOC:dph, GOC:tb] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0004128 ! optic vesicle +intersection_of: RO:0002297 UBERON:0004128 ! results in formation of anatomical entity optic vesicle relationship: part_of GO:0003404 ! optic vesicle morphogenesis relationship: part_of GO:0060900 ! embryonic camera-type eye formation -relationship: results_in_formation_of_anatomical_entity UBERON:0004128 ! optic vesicle +relationship: RO:0002297 UBERON:0004128 ! results in formation of anatomical entity optic vesicle created_by: dph creation_date: 2009-12-21T01:42:37Z @@ -43461,9 +43533,9 @@ def: "The developmental process pertaining to the formation and shaping of the o is_a: GO:0048598 ! embryonic morphogenesis is_a: GO:0048729 ! tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004128 ! optic vesicle +intersection_of: RO:0002298 UBERON:0004128 ! results in morphogenesis of optic vesicle relationship: part_of GO:0048596 ! embryonic camera-type eye morphogenesis -relationship: results_in_morphogenesis_of UBERON:0004128 ! optic vesicle +relationship: RO:0002298 UBERON:0004128 ! results in morphogenesis of optic vesicle created_by: dph creation_date: 2009-12-21T01:54:34Z @@ -43475,9 +43547,9 @@ def: "The progression of the retinal pigment epithelium over time, from its init synonym: "RPE development" RELATED [GOC:ascb_2009, GOC:dph, GOC:tb] is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001782 ! pigmented layer of retina +intersection_of: RO:0002296 UBERON:0001782 ! results in development of pigmented layer of retina relationship: part_of GO:0060041 ! retina development in camera-type eye -relationship: results_in_development_of UBERON:0001782 ! pigmented layer of retina +relationship: RO:0002296 UBERON:0001782 ! results in development of pigmented layer of retina created_by: dph creation_date: 2009-12-21T02:04:27Z @@ -43488,9 +43560,9 @@ namespace: biological_process def: "The progression of the neural retina over time from its initial formation to the mature structure. The neural retina is the part of the retina that contains neurons and photoreceptor cells." [GOC:ascb_2009, GOC:dph, GOC:tb] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003902 ! retinal neural layer +intersection_of: RO:0002296 UBERON:0003902 ! results in development of retinal neural layer relationship: part_of GO:0060041 ! retina development in camera-type eye -relationship: results_in_development_of UBERON:0003902 ! retinal neural layer +relationship: RO:0002296 UBERON:0003902 ! results in development of retinal neural layer created_by: dph creation_date: 2009-12-21T02:15:14Z @@ -43549,8 +43621,8 @@ namespace: biological_process def: "The increase in size or mass of an endochondral bone that contributes to the shaping of the bone." [GOC:ascb_2009, GOC:dph, GOC:tb] is_a: GO:0098868 ! bone growth intersection_of: GO:0048589 ! developmental growth -intersection_of: results_in_growth_of UBERON:0002513 ! endochondral bone -relationship: results_in_growth_of UBERON:0002513 ! endochondral bone +intersection_of: RO:0002343 UBERON:0002513 ! results in growth of endochondral bone +relationship: RO:0002343 UBERON:0002513 ! results in growth of endochondral bone created_by: dph creation_date: 2009-12-22T08:52:55Z @@ -43562,9 +43634,9 @@ def: "The process whose specific outcome is the progression of the cartilage tha is_a: GO:0060351 ! cartilage development involved in endochondral bone morphogenesis is_a: GO:0061448 ! connective tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004129 ! growth plate cartilage +intersection_of: RO:0002296 UBERON:0004129 ! results in development of growth plate cartilage relationship: part_of GO:0003416 ! endochondral bone growth -relationship: results_in_development_of UBERON:0004129 ! growth plate cartilage +relationship: RO:0002296 UBERON:0004129 ! results in development of growth plate cartilage created_by: dph creation_date: 2009-12-22T08:57:42Z @@ -43575,9 +43647,9 @@ namespace: biological_process def: "The process in which a chondroblast acquires specialized structural and/or functional features of a chondrocyte that will contribute to the growth of a bone. A chondrocyte is a polymorphic cell that forms cartilage." [GOC:ascb_2009, GOC:dph, GOC:tb] is_a: GO:0003413 ! chondrocyte differentiation involved in endochondral bone morphogenesis intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000217 ! growth plate cartilage chondrocyte +intersection_of: RO:0002315 CL:1000217 ! results in acquisition of features of growth plate cartilage chondrocyte relationship: part_of GO:0003417 ! growth plate cartilage development -relationship: results_in_acquisition_of_features_of CL:1000217 ! growth plate cartilage chondrocyte +relationship: RO:0002315 CL:1000217 ! results in acquisition of features of growth plate cartilage chondrocyte created_by: dph creation_date: 2009-12-22T09:00:56Z @@ -43588,9 +43660,9 @@ namespace: biological_process def: "The process in which the anatomical structures of growth plate cartilage are generated and organized." [GOC:ascb_2009, GOC:dph, GOC:tb] is_a: GO:0060536 ! cartilage morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004129 ! growth plate cartilage +intersection_of: RO:0002298 UBERON:0004129 ! results in morphogenesis of growth plate cartilage relationship: part_of GO:0003417 ! growth plate cartilage development -relationship: results_in_morphogenesis_of UBERON:0004129 ! growth plate cartilage +relationship: RO:0002298 UBERON:0004129 ! results in morphogenesis of growth plate cartilage created_by: dph creation_date: 2009-12-22T09:21:30Z @@ -43602,9 +43674,9 @@ def: "The process in which the structures of a chondrocyte in the growth plate c is_a: GO:0003414 ! chondrocyte morphogenesis involved in endochondral bone morphogenesis is_a: GO:0003422 ! growth plate cartilage morphogenesis intersection_of: GO:0090171 ! chondrocyte morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004129 ! growth plate cartilage +intersection_of: RO:0002298 UBERON:0004129 ! results in morphogenesis of growth plate cartilage relationship: part_of GO:0003418 ! growth plate cartilage chondrocyte differentiation -relationship: results_in_morphogenesis_of UBERON:0004129 ! growth plate cartilage +relationship: RO:0002298 UBERON:0004129 ! results in morphogenesis of growth plate cartilage created_by: dph creation_date: 2009-12-22T12:22:24Z @@ -43617,9 +43689,9 @@ synonym: "growth plate cartilage chondrocyte hypertrophy" EXACT [GOC:ascb_2009, is_a: GO:0003415 ! chondrocyte hypertrophy is_a: GO:0060560 ! developmental growth involved in morphogenesis intersection_of: GO:0040007 ! growth -intersection_of: results_in_growth_of CL:1000217 ! growth plate cartilage chondrocyte +intersection_of: RO:0002343 CL:1000217 ! results in growth of growth plate cartilage chondrocyte relationship: part_of GO:0003431 ! growth plate cartilage chondrocyte development -relationship: results_in_growth_of CL:1000217 ! growth plate cartilage chondrocyte +relationship: RO:0002343 CL:1000217 ! results in growth of growth plate cartilage chondrocyte created_by: dph creation_date: 2009-12-22T12:29:19Z @@ -43630,9 +43702,9 @@ namespace: biological_process def: "The progression of a growth plate cartilage chondrocyte over time from after its fate commitment to the mature cell." [GOC:ascb_2009, GOC:dph, GOC:tb] is_a: GO:0003433 ! chondrocyte development involved in endochondral bone morphogenesis intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:1000217 ! growth plate cartilage chondrocyte +intersection_of: RO:0002296 CL:1000217 ! results in development of growth plate cartilage chondrocyte relationship: part_of GO:0003418 ! growth plate cartilage chondrocyte differentiation -relationship: results_in_development_of CL:1000217 ! growth plate cartilage chondrocyte +relationship: RO:0002296 CL:1000217 ! results in development of growth plate cartilage chondrocyte created_by: dph creation_date: 2009-12-22T12:32:49Z @@ -43716,8 +43788,8 @@ subset: goslim_plant synonym: "base pairing" NARROW [] is_a: GO:0097159 ! organic cyclic compound binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:33696 ! nucleic acid -relationship: has_primary_input CHEBI:33696 ! nucleic acid +intersection_of: RO:0004009 CHEBI:33696 ! has primary input nucleic acid +relationship: RO:0004009 CHEBI:33696 ! has primary input nucleic acid [Term] id: GO:0003677 @@ -43744,8 +43816,8 @@ synonym: "structure specific DNA binding" RELATED [] synonym: "structure-specific DNA binding" RELATED [] is_a: GO:0003676 ! nucleic acid binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:16991 ! deoxyribonucleic acid -relationship: has_primary_input CHEBI:16991 ! deoxyribonucleic acid +intersection_of: RO:0004009 CHEBI:16991 ! has primary input deoxyribonucleic acid +relationship: RO:0004009 CHEBI:16991 ! has primary input deoxyribonucleic acid [Term] id: GO:0003682 @@ -43760,82 +43832,10 @@ subset: goslim_yeast synonym: "lamin/chromatin binding" NARROW [] synonym: "microtubule/chromatin interaction" NARROW [] synonym: "nuclear membrane vesicle binding to chromatin" NARROW [] -is_a: GO:0044877 ! protein-containing complex binding -intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input GO:0000785 ! chromatin -relationship: has_primary_input GO:0000785 ! chromatin - -[Term] -id: GO:0003690 -name: double-stranded DNA binding -namespace: molecular_function -def: "Binding to double-stranded DNA." [GOC:elh, GOC:vw] -synonym: "dsDNA binding" EXACT [GOC:elh] -is_a: GO:0003677 ! DNA binding +is_a: GO:0005488 ! binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:4705 ! double-stranded DNA -relationship: has_primary_input CHEBI:4705 ! double-stranded DNA - -[Term] -id: GO:0003700 -name: DNA-binding transcription factor activity -namespace: molecular_function -alt_id: GO:0000130 -alt_id: GO:0001071 -alt_id: GO:0001130 -alt_id: GO:0001131 -alt_id: GO:0001151 -alt_id: GO:0001199 -alt_id: GO:0001204 -def: "A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons." [GOC:txnOH-2018] -comment: Usage guidance: Most DNA-binding transcription factors do not have enzymatic activity. The presence of specific DNA-binding domains known to be present in DNA-binding transcription factors (HOX, GATA etc) should be used to help decide whether a protein is a DNA binding transcription factor or a coregulator. If a protein has an enzymatic activity (for example, ubiquitin ligase, histone acetyl transferase) and no known DNA binding domain, consider annotating to GO:0003712 transcription coregulator activity. Special care should be taken with proteins containing zinc fingers, Myb/SANT and ARID domains, since only a subset of proteins containing these domains directly and selectively bind to regulatory DNA motifs in cis-regulatory regions. -subset: goslim_agr -subset: goslim_candida -subset: goslim_chembl -subset: goslim_drosophila -subset: goslim_metagenomics -subset: goslim_mouse -subset: goslim_plant -subset: goslim_yeast -synonym: "bacterial-type DNA binding transcription factor activity" NARROW [] -synonym: "bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity" NARROW [] -synonym: "bacterial-type RNA polymerase transcription enhancer sequence-specific DNA binding transcription factor activity" NARROW [] -synonym: "bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding" NARROW [] -synonym: "bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding" NARROW [] -synonym: "DNA binding transcription factor activity" EXACT [] -synonym: "gene-specific transcription factor activity" EXACT [] -synonym: "metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity" NARROW [] -synonym: "metal ion regulated sequence-specific DNA binding transcription factor activity" NARROW [] -synonym: "nucleic acid binding transcription factor activity" BROAD [] -synonym: "sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity" NARROW [] -synonym: "sequence-specific DNA binding transcription factor activity" EXACT [] -synonym: "transcription factor activity" BROAD [] -synonym: "transcription factor activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding" NARROW [] -synonym: "transcription factor activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding" NARROW [] -synonym: "transcription factor activity, bacterial-type RNA polymerase transcription enhancer sequence-specific binding" NARROW [] -synonym: "transcription factor activity, metal ion regulated sequence-specific DNA binding" NARROW [] -is_a: GO:0140110 ! transcription regulator activity -intersection_of: GO:0140110 ! transcription regulator activity -intersection_of: has_part GO:0000976 ! transcription cis-regulatory region binding -intersection_of: part_of GO:0006355 ! regulation of DNA-templated transcription -relationship: has_part GO:0000976 ! transcription cis-regulatory region binding -relationship: part_of GO:0006355 ! regulation of DNA-templated transcription -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/15704" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16534" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20253" xsd:anyURI -created_by: krc -creation_date: 2010-10-21T04:37:54Z - -[Term] -id: GO:0003707 -name: nuclear steroid receptor activity -namespace: molecular_function -def: "Combining with a steroid hormone and transmitting the signal within the cell to initiate a change in cell activity or function." [GOC:signaling, PMID:14708019] -synonym: "steroid hormone receptor activity" BROAD [] -is_a: GO:0004879 ! nuclear receptor activity -relationship: part_of GO:0043401 ! steroid hormone receptor signaling pathway -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16717" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26957" xsd:anyURI +intersection_of: RO:0004009 GO:0000785 ! has primary input chromatin +relationship: RO:0004009 GO:0000785 ! has primary input chromatin [Term] id: GO:0003723 @@ -43864,8 +43864,8 @@ synonym: "poly-A RNA binding" RELATED [] xref: Reactome:R-HSA-203922 "Exportin-5 recognizes 3' overhang of pre-miRNA" is_a: GO:0003676 ! nucleic acid binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:33697 ! ribonucleic acid -relationship: has_primary_input CHEBI:33697 ! ribonucleic acid +intersection_of: RO:0004009 CHEBI:33697 ! has primary input ribonucleic acid +relationship: RO:0004009 CHEBI:33697 ! has primary input ribonucleic acid [Term] id: GO:0003824 @@ -43952,7 +43952,8 @@ namespace: molecular_function alt_id: GO:0004718 def: "Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate." [RHEA:10596] synonym: "protein-tyrosine kinase activity" EXACT [] -xref: EC:2.7.10.2 {source="skos:narrowMatch"} +xref: EC:2.7.10.- {source="skos:exactMatch"} +xref: MetaCyc:2.7.10.1-RXN xref: Reactome:R-HSA-112333 "SRC autophosphorylation is positively regulated by InlA-bound CDH1" xref: Reactome:R-HSA-114600 "Fyn/Lyn-mediated phosphorylation of FcR1 gamma" xref: Reactome:R-HSA-1168394 "STAT5 tyrosine phosphorylation" @@ -44329,13 +44330,22 @@ xref: Reactome:R-HSA-9831136 "SH pentamer is phosphorylated" xref: Reactome:R-HSA-983703 "p-6Y-SYK phosphorylates BLNK (SLP65)" xref: Reactome:R-HSA-983707 "SYK autophosphorylates at the activated BCR" xref: Reactome:R-HSA-983709 "LYN, FYN, BLK phosphorylate ITAMs of Ig-alpha (CD79A) and Ig-beta (CD79B)" +xref: Reactome:R-HSA-9841924 "ABL1 phosphorylates PPARG2" +xref: Reactome:R-HSA-9842648 "Autophosphorylation of LTK dimer:ALKAL1,2" +xref: Reactome:R-HSA-9842651 "Active LTK receptor phosphorylates SHC1" +xref: Reactome:R-HSA-9842666 "Active LTK phosphorylates IRS1" +xref: Reactome:R-HSA-9842667 "CLIP1-LTK fusion autophosphorylates" +xref: Reactome:R-HSA-9860500 "Phosphorylation of KDR (VEGFR2) and FLT4 (VEGFR3) and PECAM1 in PECAM1:CDH5:KDR:FLT4:CTNNB1" +xref: Reactome:R-HSA-9860759 "p-T816-PKN2 phosphorylates AKT1 on serine-308" +xref: Reactome:R-HSA-9861469 "p-Y397-PTK2 (FAK) phosphorylates CHUK (IKKA)" +xref: Reactome:R-HSA-9865196 "p-Y393-ABL1 phosphorylates tyrosine-407 of YAP1" xref: RHEA:10596 {source="skos:exactMatch"} is_a: GO:0004672 ! protein kinase activity -relationship: has_participant CHEBI:15378 ! hydron -relationship: has_participant CHEBI:30616 ! ATP(4-) -relationship: has_participant CHEBI:456216 ! ADP(3-) -relationship: has_participant CHEBI:46858 ! L-tyrosine residue -relationship: has_participant CHEBI:82620 ! L-tyrosine-O-phosphate(2-) residue +relationship: RO:0000057 CHEBI:15378 ! has participant hydron +relationship: RO:0000057 CHEBI:30616 ! has participant ATP(4-) +relationship: RO:0000057 CHEBI:456216 ! has participant ADP(3-) +relationship: RO:0000057 CHEBI:46858 ! has participant L-tyrosine residue +relationship: RO:0000057 CHEBI:82620 ! has participant L-tyrosine-O-phosphate(2-) residue [Term] id: GO:0004714 @@ -44345,7 +44355,6 @@ def: "Combining with a signal and transmitting the signal from one side of the m synonym: "receptor protein tyrosine kinase activity" RELATED [EC:2.7.10.1] synonym: "receptor protein-tyrosine kinase activity" RELATED [EC:2.7.10.1] xref: EC:2.7.10.1 {source="skos:exactMatch"} -xref: MetaCyc:2.7.10.1-RXN xref: Reactome:R-HSA-166544 "TrkA receptor autophosphorylates" xref: Reactome:R-HSA-167019 "SHC, complexed with TrkA, is tyrosine-phosphorylated" xref: Reactome:R-HSA-167683 "TrkA phosphorylates PLCG1" @@ -44391,65 +44400,7 @@ xref: Reactome:R-HSA-8987202 "IFNL1:IFNLR1:JAK1:IL10RB:TYK2 phosphorylates JAK1, xref: Reactome:R-HSA-8987255 "IL26:IL10RB:p-TYK2:IL20RA:p-JAK1:STAT1,STAT3 phosphorylates STAT1,STAT3" is_a: GO:0004713 ! protein tyrosine kinase activity is_a: GO:0019199 ! transmembrane receptor protein kinase activity - -[Term] -id: GO:0004879 -name: nuclear receptor activity -namespace: molecular_function -alt_id: GO:0003708 -alt_id: GO:0004880 -alt_id: GO:0004882 -alt_id: GO:0004884 -alt_id: GO:0004886 -alt_id: GO:0004887 -alt_id: GO:0008434 -alt_id: GO:0038050 -alt_id: GO:0038051 -alt_id: GO:0038052 -def: "A DNA-binding transcription factor activity regulated by binding to a ligand that modulates the transcription of specific gene sets transcribed by RNA polymerase II. Nuclear receptor ligands are usually lipid-based (such as a steroid hormone) and the binding of the ligand to its receptor often occurs in the cytosol, which leads to its translocation to the nucleus." [GOC:txnOH-2018, PMID:23457262] -comment: Usage guidance: Nuclear receptors are a protein family defined by the presence of a C4-type zinc finger DNA-binding domain and a ligand binding domain. For nuclear receptors, the DNA binding motif is most often referred to as a response element. GO:0004879 is intended for annotation of nuclear receptors that regulate transcription by binding directly to DNA. When the nuclear receptor functions by binding to other transcription factors or transcription factor complexes, consider instead annotating to 'GO:0030374 ; nuclear receptor transcription coactivator activity' or GO:0140536 ; nuclear corepressor activity. -synonym: "1,25-(OH)2D3 receptor activity" NARROW [Wikipedia:Calcitriol] -synonym: "9-cis retinoic acid receptor activity" NARROW [] -synonym: "androgen receptor activity" NARROW [] -synonym: "calcitriol receptor activity" NARROW [] -synonym: "ecdysteroid hormone receptor activity" NARROW [] -synonym: "estrogen nuclear receptor activity" NARROW [GOC:bf] -synonym: "glucocorticoid receptor activity" NARROW [GOC:bf] -synonym: "juvenile hormone receptor activity" NARROW [] -synonym: "ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity" EXACT [] -synonym: "ligand-dependent nuclear receptor activity" RELATED [GOC:bf] -synonym: "ligand-dependent transcription factor activity" RELATED [GOC:bf] -synonym: "nuclear hormone receptor" NARROW [] -synonym: "retinoic acid receptor activity" NARROW [] -synonym: "retinoid-X receptor activity" NARROW [GOC:bf] -synonym: "RNA polymerase II transcription factor activity, estrogen-activated sequence-specific DNA binding" NARROW [] -synonym: "RNA polymerase II transcription factor activity, glucocorticoid-activated sequence-specific DNA binding" NARROW [] -synonym: "RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding" EXACT [] -synonym: "RXR" NARROW [] -synonym: "thyroid hormone receptor activity" NARROW [] -synonym: "vitamin A receptor activity" NARROW [] -synonym: "vitamin D receptor activity" NARROW [] -synonym: "vitamin D3 receptor activity" NARROW [GOC:bf, Wikipedia:Calcitriol_receptor] -is_a: GO:0000981 ! DNA-binding transcription factor activity, RNA polymerase II-specific -is_a: GO:0038023 ! signaling receptor activity -is_a: GO:0098531 ! ligand-activated transcription factor activity -relationship: part_of GO:0030522 ! intracellular receptor signaling pathway -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19518" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20253" xsd:anyURI - -[Term] -id: GO:0004883 -name: nuclear glucocorticoid receptor activity -namespace: molecular_function -def: "Combining with a glucocorticoid and transmitting the signal within the cell trigger a change in cell activity or function." [GOC:signaling, PMID:17689856, PMID:20920967] -synonym: "glucocorticoid receptor activity" BROAD [] -is_a: GO:0003707 ! nuclear steroid receptor activity -intersection_of: GO:0038023 ! signaling receptor activity -intersection_of: has_primary_input CHEBI:24261 ! glucocorticoid -relationship: has_primary_input CHEBI:24261 ! glucocorticoid -relationship: part_of GO:0042921 ! nuclear receptor-mediated glucocorticoid signaling pathway -relationship: part_of GO:0043402 ! glucocorticoid mediated signaling pathway -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16717" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28176" xsd:anyURI [Term] id: GO:0004888 @@ -44485,10 +44436,10 @@ namespace: molecular_function def: "Combining with prolactin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity." [GOC:mah, GOC:signaling] is_a: GO:0004896 ! cytokine receptor activity intersection_of: GO:0038023 ! signaling receptor activity -intersection_of: has_primary_input PR:000013246 ! prolactin -relationship: has_primary_input PR:000013246 ! prolactin +intersection_of: RO:0004009 PR:000013246 ! has primary input prolactin relationship: never_in_taxon NCBITaxon:4751 ! Fungi relationship: part_of GO:0038161 ! prolactin signaling pathway +relationship: RO:0004009 PR:000013246 ! has primary input prolactin [Term] id: GO:0004930 @@ -44521,6 +44472,7 @@ synonym: "super conserved receptor expressed in brain receptor activity" NARROW xref: Reactome:R-HSA-114552 "Thrombin-activated PARs activate G12/13" xref: Reactome:R-HSA-114558 "Thrombin-activated PARs activate Gq" xref: Reactome:R-HSA-167408 "The high affinity receptor complex binds to G-protein" +xref: Reactome:R-HSA-381706 "GLP1R:GLP1 activates G(s)" xref: Wikipedia:GPCR is_a: GO:0004888 ! transmembrane signaling receptor activity relationship: part_of GO:0007186 ! G protein-coupled receptor signaling pathway @@ -44532,9 +44484,9 @@ namespace: molecular_function def: "Combining with calcitonin and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex." [GOC:mah, GOC:signaling, PMID:21649645] is_a: GO:0097642 ! calcitonin family receptor activity intersection_of: GO:0038023 ! signaling receptor activity -intersection_of: has_primary_input CHEBI:3306 ! calcitonin +intersection_of: RO:0004009 CHEBI:3306 ! has primary input calcitonin relationship: has_part GO:0032841 ! calcitonin binding -relationship: has_primary_input CHEBI:3306 ! calcitonin +relationship: RO:0004009 CHEBI:3306 ! has primary input calcitonin [Term] id: GO:0004967 @@ -44543,9 +44495,9 @@ namespace: molecular_function def: "Combining with glucagon and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex." [GOC:mah, GOC:signaling, PMID:22438981] is_a: GO:0008528 ! G protein-coupled peptide receptor activity intersection_of: GO:0038023 ! signaling receptor activity -intersection_of: has_primary_input CHEBI:5391 ! glucagon -relationship: has_primary_input CHEBI:5391 ! glucagon +intersection_of: RO:0004009 CHEBI:5391 ! has primary input glucagon relationship: part_of GO:0071377 ! cellular response to glucagon stimulus +relationship: RO:0004009 CHEBI:5391 ! has primary input glucagon [Term] id: GO:0004969 @@ -44554,9 +44506,9 @@ namespace: molecular_function def: "Combining with histamine to initiate a change in cell activity. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans." [GOC:ai] is_a: GO:0008227 ! G protein-coupled amine receptor activity intersection_of: GO:0038023 ! signaling receptor activity -intersection_of: has_primary_input CHEBI:58432 ! histaminium +intersection_of: RO:0004009 CHEBI:58432 ! has primary input histaminium relationship: has_part GO:0051381 ! histamine binding -relationship: has_primary_input CHEBI:58432 ! histaminium +relationship: RO:0004009 CHEBI:58432 ! has primary input histaminium [Term] id: GO:0004977 @@ -44576,9 +44528,9 @@ synonym: "adrenocorticotropin receptor activity" EXACT [] is_a: GO:0004977 ! melanocortin receptor activity is_a: GO:0008188 ! neuropeptide receptor activity intersection_of: GO:0038023 ! signaling receptor activity -intersection_of: has_primary_input CHEBI:3892 ! corticotropin +intersection_of: RO:0004009 CHEBI:3892 ! has primary input corticotropin relationship: has_part GO:0042562 ! hormone binding -relationship: has_primary_input CHEBI:3892 ! corticotropin +relationship: RO:0004009 CHEBI:3892 ! has primary input corticotropin [Term] id: GO:0004993 @@ -44594,10 +44546,10 @@ synonym: "G-protein coupled serotonin receptor activity" EXACT [] xref: Wikipedia:5-HT_receptor is_a: GO:0008227 ! G protein-coupled amine receptor activity intersection_of: GO:0008227 ! G protein-coupled amine receptor activity -intersection_of: has_primary_input CHEBI:350546 ! serotonin(1+) +intersection_of: RO:0004009 CHEBI:350546 ! has primary input serotonin(1+) relationship: has_part GO:0051378 ! serotonin binding -relationship: has_primary_input CHEBI:350546 ! serotonin(1+) relationship: part_of GO:0098664 ! G protein-coupled serotonin receptor signaling pathway +relationship: RO:0004009 CHEBI:350546 ! has primary input serotonin(1+) property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/12942" xsd:anyURI [Term] @@ -44612,9 +44564,9 @@ synonym: "SRIF receptor activity" EXACT [Wikipedia:Somatostatin] synonym: "SST receptor activity" EXACT [Wikipedia:Somatostatin] is_a: GO:0008188 ! neuropeptide receptor activity intersection_of: GO:0038023 ! signaling receptor activity -intersection_of: has_primary_input CHEBI:64628 ! somatostatin -relationship: has_primary_input CHEBI:64628 ! somatostatin +intersection_of: RO:0004009 CHEBI:64628 ! has primary input somatostatin relationship: part_of GO:0038170 ! somatostatin signaling pathway +relationship: RO:0004009 CHEBI:64628 ! has primary input somatostatin [Term] id: GO:0005000 @@ -44625,8 +44577,8 @@ def: "Combining with vasopressin to initiate a change in cell activity." [GOC:ai synonym: "vasopressin activated calcium mobilizing receptor activity" NARROW [] is_a: GO:0008528 ! G protein-coupled peptide receptor activity intersection_of: GO:0038023 ! signaling receptor activity -intersection_of: has_primary_input CHEBI:9937 ! vasopressin -relationship: has_primary_input CHEBI:9937 ! vasopressin +intersection_of: RO:0004009 CHEBI:9937 ! has primary input vasopressin +relationship: RO:0004009 CHEBI:9937 ! has primary input vasopressin [Term] id: GO:0005009 @@ -44634,17 +44586,19 @@ name: insulin receptor activity namespace: molecular_function def: "Combining with insulin receptor ligand and transmitting the signal across the plasma membrane to initiate a change in cell activity." [ISBN:0198506732] synonym: "insulin-activated receptor activity" EXACT [] +xref: EC:2.7.10.1 {source="skos:broadMatch"} xref: Reactome:R-HSA-74715 "Autophosphorylation of insulin receptor" is_a: GO:0004714 ! transmembrane receptor protein tyrosine kinase activity is_a: GO:0016500 ! protein-hormone receptor activity intersection_of: GO:0038023 ! signaling receptor activity -intersection_of: has_primary_input PR:000009054 ! insulin gene translation product +intersection_of: RO:0004009 PR:000009054 ! has primary input insulin gene translation product relationship: has_part GO:0043559 ! insulin binding -relationship: has_primary_input PR:000009054 ! insulin gene translation product relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: part_of GO:0008286 ! insulin receptor signaling pathway +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa +relationship: RO:0004009 PR:000009054 ! has primary input insulin gene translation product property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23056" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28520" xsd:anyURI [Term] id: GO:0005102 @@ -44684,8 +44638,8 @@ synonym: "VEGFR binding" EXACT [] is_a: GO:0005126 ! cytokine receptor binding is_a: GO:0070851 ! growth factor receptor binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input PR:000001971 ! vascular endothelial growth factor receptor -relationship: has_primary_input PR:000001971 ! vascular endothelial growth factor receptor +intersection_of: RO:0004009 PR:000001971 ! has primary input vascular endothelial growth factor receptor +relationship: RO:0004009 PR:000001971 ! has primary input vascular endothelial growth factor receptor [Term] id: GO:0005173 @@ -44699,8 +44653,8 @@ synonym: "stem cell factor" NARROW [] synonym: "stem cell factor receptor ligand" NARROW [] is_a: GO:0005126 ! cytokine receptor binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input PR:000002065 ! mast/stem cell growth factor receptor -relationship: has_primary_input PR:000002065 ! mast/stem cell growth factor receptor +intersection_of: RO:0004009 PR:000002065 ! has primary input mast/stem cell growth factor receptor +relationship: RO:0004009 PR:000002065 ! has primary input mast/stem cell growth factor receptor [Term] id: GO:0005215 @@ -44738,9 +44692,9 @@ synonym: "amine/polyamine transmembrane transporter activity" EXACT [] synonym: "amino acid-polyamine transmembrane transporter activity" EXACT [] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:32952 ! amine -relationship: has_primary_input CHEBI:32952 ! amine +intersection_of: RO:0004009 CHEBI:32952 ! has primary input amine relationship: part_of GO:0015837 ! amine transport +relationship: RO:0004009 CHEBI:32952 ! has primary input amine [Term] id: GO:0005277 @@ -44752,8 +44706,8 @@ is_a: GO:0005326 ! neurotransmitter transmembrane transporter activity is_a: GO:0015101 ! organic cation transmembrane transporter activity is_a: GO:1901375 ! acetate ester transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:15355 ! acetylcholine -relationship: has_primary_input CHEBI:15355 ! acetylcholine +intersection_of: RO:0004009 CHEBI:15355 ! has primary input acetylcholine +relationship: RO:0004009 CHEBI:15355 ! has primary input acetylcholine [Term] id: GO:0005302 @@ -44766,9 +44720,9 @@ synonym: "L-tyrosine transporter activity" BROAD [] synonym: "valine/tyrosine/tryptophan permease activity" RELATED [] is_a: GO:0015171 ! amino acid transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:58315 ! L-tyrosine zwitterion -relationship: has_primary_input CHEBI:58315 ! L-tyrosine zwitterion +intersection_of: RO:0004009 CHEBI:58315 ! has primary input L-tyrosine zwitterion relationship: part_of GO:0015828 ! tyrosine transport +relationship: RO:0004009 CHEBI:58315 ! has primary input L-tyrosine zwitterion [Term] id: GO:0005310 @@ -44785,9 +44739,9 @@ xref: Reactome:R-HSA-1614546 "Sulfate is exported to the cytosol in exchange for xref: Reactome:R-HSA-372843 "SLC25A10 mediates exchange of malate and phosphate" is_a: GO:0005342 ! organic acid transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:35692 ! dicarboxylic acid -relationship: has_primary_input CHEBI:35692 ! dicarboxylic acid +intersection_of: RO:0004009 CHEBI:35692 ! has primary input dicarboxylic acid relationship: part_of GO:0006835 ! dicarboxylic acid transport +relationship: RO:0004009 CHEBI:35692 ! has primary input dicarboxylic acid [Term] id: GO:0005313 @@ -44801,14 +44755,13 @@ synonym: "L-glutamate transporter activity" BROAD [] xref: Reactome:R-HSA-210444 "L-Glutamate loading of synaptic vesicle" xref: Reactome:R-HSA-428052 "SLC17A6,7,8 exchange cytosolic L-Glu for synaptic vesicle H+" xref: Reactome:R-HSA-5624256 "Defective SLC17A8 does not exchange cytosolic L-Glu for synaptic vesicle H+" -xref: RHEA:66336 {source="skos:broadMatch"} is_a: GO:0015172 ! acidic amino acid transmembrane transporter activity is_a: GO:0046943 ! carboxylic acid transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:29985 ! L-glutamate(1-) -relationship: has_participant CHEBI:29985 ! L-glutamate(1-) -relationship: has_primary_input CHEBI:29985 ! L-glutamate(1-) +intersection_of: RO:0004009 CHEBI:29985 ! has primary input L-glutamate(1-) relationship: part_of GO:0015813 ! L-glutamate transmembrane transport +relationship: RO:0004009 CHEBI:29985 ! has primary input L-glutamate(1-) +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27521" xsd:anyURI [Term] id: GO:0005315 @@ -44818,14 +44771,13 @@ alt_id: GO:0005317 alt_id: GO:1901677 def: "Enables the transfer of phosphate ions from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters." [GOC:mtg_transport] synonym: "inorganic phosphate transmembrane transporter activity" EXACT [] -xref: RHEA:32823 is_a: GO:0015103 ! inorganic anion transmembrane transporter activity is_a: GO:0015291 ! secondary active transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:43474 ! hydrogenphosphate -relationship: has_participant CHEBI:43474 ! hydrogenphosphate -relationship: has_primary_input CHEBI:43474 ! hydrogenphosphate +intersection_of: RO:0004009 CHEBI:43474 ! has primary input hydrogenphosphate +relationship: RO:0004009 CHEBI:43474 ! has primary input hydrogenphosphate property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27121" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27521" xsd:anyURI [Term] id: GO:0005319 @@ -44847,9 +44799,9 @@ xref: Reactome:R-HSA-8848053 "ABCA5 transports CHOL from lysosomal lumen to cyto xref: Reactome:R-HSA-8866329 "MTTP lipidates APOB-100, forming a pre-VLDL" is_a: GO:0005215 ! transporter activity intersection_of: GO:0005215 ! transporter activity -intersection_of: has_primary_input CHEBI:18059 ! lipid -relationship: has_primary_input CHEBI:18059 ! lipid -relationship: part_of GO:0006869 ! lipid transport +intersection_of: RO:0004009 CHEBI:18059 ! has primary input lipid +relationship: part_of GO:0006869 {source="GO_REF:0000090"} ! lipid transport +relationship: RO:0004009 CHEBI:18059 ! has primary input lipid [Term] id: GO:0005326 @@ -44860,8 +44812,8 @@ synonym: "neurotransmitter transporter activity" RELATED [] xref: Reactome:R-HSA-374896 "Uptake of Noradrenaline" xref: Reactome:R-HSA-374919 "Noradrenaline clearance from the synaptic cleft" relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa -relationship: part_of GO:0006836 ! neurotransmitter transport +relationship: part_of GO:0006836 {source="GO_REF:0000090"} ! neurotransmitter transport +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa [Term] id: GO:0005337 @@ -44885,9 +44837,9 @@ xref: Reactome:R-HSA-9755035 "SLC29A1 transports RBV from cytosol to extracellul is_a: GO:0015932 ! nucleobase-containing compound transmembrane transporter activity is_a: GO:1901505 ! carbohydrate derivative transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:33838 ! nucleoside -relationship: has_primary_input CHEBI:33838 ! nucleoside -relationship: part_of GO:1901642 ! nucleoside transmembrane transport +intersection_of: RO:0004009 CHEBI:33838 ! has primary input nucleoside +relationship: part_of GO:1901642 {source="GO_REF:0000090"} ! nucleoside transmembrane transport +relationship: RO:0004009 CHEBI:33838 ! has primary input nucleoside [Term] id: GO:0005342 @@ -44896,9 +44848,9 @@ namespace: molecular_function def: "Enables the transfer of organic acids from one side of a membrane to the other. Organic acids are acidic compound containing carbon in covalent linkage." [ISBN:0198506732] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:64709 ! organic acid -relationship: has_primary_input CHEBI:64709 ! organic acid +intersection_of: RO:0004009 CHEBI:64709 ! has primary input organic acid relationship: part_of GO:1903825 ! organic acid transmembrane transport +relationship: RO:0004009 CHEBI:64709 ! has primary input organic acid [Term] id: GO:0005345 @@ -44909,9 +44861,9 @@ synonym: "purine base transmembrane transporter activity" EXACT [GOC:go_curators synonym: "purine transmembrane transporter activity" RELATED [] is_a: GO:0015205 ! nucleobase transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:26386 ! purine nucleobase -relationship: has_primary_input CHEBI:26386 ! purine nucleobase +intersection_of: RO:0004009 CHEBI:26386 ! has primary input purine nucleobase relationship: part_of GO:1904823 ! purine nucleobase transmembrane transport +relationship: RO:0004009 CHEBI:26386 ! has primary input purine nucleobase [Term] id: GO:0005346 @@ -44921,8 +44873,8 @@ def: "Enables the transfer of a purine ribonucleotide, any compound consisting o is_a: GO:0015216 ! purine nucleotide transmembrane transporter activity is_a: GO:1901505 ! carbohydrate derivative transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:26400 ! purine ribonucleotide -relationship: has_primary_input CHEBI:26400 ! purine ribonucleotide +intersection_of: RO:0004009 CHEBI:26400 ! has primary input purine ribonucleotide +relationship: RO:0004009 CHEBI:26400 ! has primary input purine ribonucleotide [Term] id: GO:0005347 @@ -44933,26 +44885,9 @@ def: "Enables the transfer of ATP, adenosine triphosphate, from one side of a me xref: Reactome:R-HSA-9717392 "CALHM1:CALHM3 transports ATP from the cytosol to the extracellular region" is_a: GO:0008514 ! organic anion transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:30616 ! ATP(4-) -relationship: has_primary_input CHEBI:30616 ! ATP(4-) +intersection_of: RO:0004009 CHEBI:30616 ! has primary input ATP(4-) relationship: part_of GO:0015867 ! ATP transport - -[Term] -id: GO:0005355 -name: glucose transmembrane transporter activity -namespace: molecular_function -alt_id: GO:0015579 -def: "Enables the transfer of the hexose monosaccharide glucose from one side of a membrane to the other." [GOC:ai, GOC:mtg_transport, ISBN:0815340729] -synonym: "galactose/glucose (methylgalactoside) porter activity" RELATED [] -synonym: "glucose permease activity" EXACT [] -synonym: "lactose/glucose efflux transporter activity" NARROW [] -xref: Reactome:R-HSA-499981 "Transport of Extracellular Glucose to the Cytosol by GLUT1 and GLUT2" -xref: Reactome:R-HSA-5653873 "SLC2A1 tetramer transports Glc from cytosol to Golgi lumen" -is_a: GO:0055056 ! D-glucose transmembrane transporter activity -intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:4167 ! D-glucopyranose -relationship: has_primary_input CHEBI:4167 ! D-glucopyranose -relationship: part_of GO:1904659 ! glucose transmembrane transport +relationship: RO:0004009 CHEBI:30616 ! has primary input ATP(4-) [Term] id: GO:0005372 @@ -44961,9 +44896,9 @@ namespace: molecular_function def: "Enables the transfer of water (H2O) from one side of a membrane to the other." [GOC:ai] is_a: GO:0015318 ! inorganic molecular entity transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:15377 ! water -relationship: has_primary_input CHEBI:15377 ! water +intersection_of: RO:0004009 CHEBI:15377 ! has primary input water relationship: part_of GO:0006833 ! water transport +relationship: RO:0004009 CHEBI:15377 ! has primary input water [Term] id: GO:0005381 @@ -44988,9 +44923,9 @@ xref: Reactome:R-HSA-904830 "SLC40A1:CP:6Cu2+ transports Fe2+ from cytosol to ex xref: Reactome:R-HSA-917936 "MCOLN1 transports Fe2+ from endosome lumen to cytosol" is_a: GO:0046915 ! transition metal ion transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:24875 ! iron cation -relationship: has_primary_input CHEBI:24875 ! iron cation +intersection_of: RO:0004009 CHEBI:24875 ! has primary input iron cation relationship: part_of GO:0034755 ! iron ion transmembrane transport +relationship: RO:0004009 CHEBI:24875 ! has primary input iron cation property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/17162" xsd:anyURI [Term] @@ -44998,7 +44933,6 @@ id: GO:0005488 name: binding namespace: molecular_function def: "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule." [GOC:ceb, GOC:mah, ISBN:0198506732] -comment: Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children. subset: goslim_pir subset: goslim_plant synonym: "ligand" NARROW [] @@ -45014,8 +44948,8 @@ subset: goslim_pir is_a: GO:0008289 ! lipid binding is_a: GO:0097159 ! organic cyclic compound binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:35341 ! steroid -relationship: has_primary_input CHEBI:35341 ! steroid +intersection_of: RO:0004009 CHEBI:35341 ! has primary input steroid +relationship: RO:0004009 CHEBI:35341 ! has primary input steroid [Term] id: GO:0005500 @@ -45025,8 +44959,8 @@ def: "Binding to a juvenile hormone, a sesquiterpenoid derivative that function is_a: GO:0019840 ! isoprenoid binding is_a: GO:0042562 ! hormone binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:24943 ! juvenile hormone -relationship: has_primary_input CHEBI:24943 ! juvenile hormone +intersection_of: RO:0004009 CHEBI:24943 ! has primary input juvenile hormone +relationship: RO:0004009 CHEBI:24943 ! has primary input juvenile hormone [Term] id: GO:0005504 @@ -45036,8 +44970,8 @@ def: "Binding to a fatty acid, an aliphatic monocarboxylic acids liberated from is_a: GO:0008289 ! lipid binding is_a: GO:0033293 ! monocarboxylic acid binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:28868 ! fatty acid anion -relationship: has_primary_input CHEBI:28868 ! fatty acid anion +intersection_of: RO:0004009 CHEBI:28868 ! has primary input fatty acid anion +relationship: RO:0004009 CHEBI:28868 ! has primary input fatty acid anion [Term] id: GO:0005506 @@ -45047,8 +44981,8 @@ def: "Binding to an iron (Fe) ion." [GOC:ai] synonym: "iron binding" EXACT [] is_a: GO:0046914 ! transition metal ion binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:24875 ! iron cation -relationship: has_primary_input CHEBI:24875 ! iron cation +intersection_of: RO:0004009 CHEBI:24875 ! has primary input iron cation +relationship: RO:0004009 CHEBI:24875 ! has primary input iron cation [Term] id: GO:0005509 @@ -45058,8 +44992,8 @@ def: "Binding to a calcium ion (Ca2+)." [GOC:ai] synonym: "calcium ion storage activity" RELATED [] is_a: GO:0046872 ! metal ion binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:29108 ! calcium(2+) -relationship: has_primary_input CHEBI:29108 ! calcium(2+) +intersection_of: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) [Term] id: GO:0005515 @@ -45078,10 +45012,11 @@ subset: goslim_plant_ribbon subset: goslim_prokaryote_ribbon synonym: "glycoprotein binding" NARROW [] synonym: "protein amino acid binding" EXACT [] +xref: Reactome:R-HSA-9866132 "Intermediate II binds CYC1, UQCRC1, UQCRC2, UQCRH" is_a: GO:0005488 ! binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input PR:000000001 ! protein -relationship: has_primary_input PR:000000001 ! protein +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: RO:0004009 PR:000000001 ! has primary input protein [Term] id: GO:0005518 @@ -45090,8 +45025,8 @@ namespace: molecular_function def: "Binding to collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%)." [GOC:ai, ISBN:0198506732] is_a: GO:0044877 ! protein-containing complex binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input GO:0005581 ! collagen trimer -relationship: has_primary_input GO:0005581 ! collagen trimer +intersection_of: RO:0004009 GO:0005581 ! has primary input collagen trimer +relationship: RO:0004009 GO:0005581 ! has primary input collagen trimer [Term] id: GO:0005524 @@ -45103,8 +45038,8 @@ synonym: "MgATP binding" EXACT [] xref: Reactome:R-HSA-265682 "KCNJ11 tetramer:ABCC8 tetramer binds 4xATP, closing the channel" is_a: GO:0043168 ! anion binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:30616 ! ATP(4-) -relationship: has_primary_input CHEBI:30616 ! ATP(4-) +intersection_of: RO:0004009 CHEBI:30616 ! has primary input ATP(4-) +relationship: RO:0004009 CHEBI:30616 ! has primary input ATP(4-) [Term] id: GO:0005536 @@ -45114,8 +45049,8 @@ def: "Binding to D-enantiomers of glucose." [GOC:jl] synonym: "glucose binding" BROAD [] is_a: GO:0048029 ! monosaccharide binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:4167 ! D-glucopyranose -relationship: has_primary_input CHEBI:4167 ! D-glucopyranose +intersection_of: RO:0004009 CHEBI:4167 ! has primary input D-glucopyranose +relationship: RO:0004009 CHEBI:4167 ! has primary input D-glucopyranose [Term] id: GO:0005539 @@ -45125,8 +45060,8 @@ def: "Binding to a glycan (polysaccharide) containing a substantial proportion o subset: goslim_chembl is_a: GO:0097367 ! carbohydrate derivative binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:18085 ! glycosaminoglycan -relationship: has_primary_input CHEBI:18085 ! glycosaminoglycan +intersection_of: RO:0004009 CHEBI:18085 ! has primary input glycosaminoglycan +relationship: RO:0004009 CHEBI:18085 ! has primary input glycosaminoglycan [Term] id: GO:0005540 @@ -45136,8 +45071,8 @@ def: "Binding to hyaluronic acid, a polymer composed of repeating dimeric units synonym: "hyaluronan binding" EXACT [] is_a: GO:0005539 ! glycosaminoglycan binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:16336 ! hyaluronic acid -relationship: has_primary_input CHEBI:16336 ! hyaluronic acid +intersection_of: RO:0004009 CHEBI:16336 ! has primary input hyaluronic acid +relationship: RO:0004009 CHEBI:16336 ! has primary input hyaluronic acid [Term] id: GO:0005543 @@ -45146,8 +45081,8 @@ namespace: molecular_function def: "Binding to a phospholipid, a class of lipids containing phosphoric acid as a mono- or diester." [ISBN:0198506732] is_a: GO:0008289 ! lipid binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:16247 ! phospholipid -relationship: has_primary_input CHEBI:16247 ! phospholipid +intersection_of: RO:0004009 CHEBI:16247 ! has primary input phospholipid +relationship: RO:0004009 CHEBI:16247 ! has primary input phospholipid [Term] id: GO:0005548 @@ -45164,9 +45099,9 @@ xref: Reactome:R-HSA-8865637 "MFSD2A transports LPC from extracellular region to xref: Reactome:R-HSA-8867876 "OSBPL5,8,10 exchange PS with PI4P from ER membrane to plasma membrane" is_a: GO:0005319 ! lipid transporter activity intersection_of: GO:0005215 ! transporter activity -intersection_of: has_primary_input CHEBI:16247 ! phospholipid -relationship: has_primary_input CHEBI:16247 ! phospholipid -relationship: part_of GO:0015914 ! phospholipid transport +intersection_of: RO:0004009 CHEBI:16247 ! has primary input phospholipid +relationship: part_of GO:0015914 {source="GO_REF:0000090"} ! phospholipid transport +relationship: RO:0004009 CHEBI:16247 ! has primary input phospholipid [Term] id: GO:0005575 @@ -45211,7 +45146,7 @@ subset: goslim_prokaryote_ribbon subset: goslim_yeast synonym: "extracellular" EXACT [] xref: Wikipedia:Extracellular -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure [Term] id: GO:0005577 @@ -45234,7 +45169,7 @@ def: "A protein complex consisting of three collagen chains assembled into a lef xref: Wikipedia:Collagen is_a: GO:0032991 ! protein-containing complex relationship: in_taxon NCBITaxon:33208 {all_only="true", source="PMID:12382326"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 {source="PMID:12382326"} ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 {source="PMID:12382326"} ! only in taxon Metazoa [Term] id: GO:0005583 @@ -45307,7 +45242,7 @@ subset: goslim_drosophila subset: goslim_generic synonym: "intercellular space" RELATED [] xref: NIF_Subcellular:sao1425028079 -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of GO:0005576 ! extracellular region [Term] @@ -45325,7 +45260,7 @@ synonym: "nucleocytoplasm" RELATED [GOC:mah] synonym: "protoplasm" EXACT [] synonym: "protoplast" RELATED [GOC:mah] xref: Wikipedia:Intracellular -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of CL:0000000 ! cell property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/17776" xsd:anyURI @@ -45355,7 +45290,7 @@ is_a: GO:0043231 ! intracellular membrane-bounded organelle disjoint_from: GO:0005737 ! cytoplasm disjoint_from: GO:0005829 ! cytosol relationship: in_taxon NCBITaxon:2759 {all_only="true"} ! Eukaryota -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota [Term] id: GO:0005635 @@ -45386,24 +45321,6 @@ intersection_of: bounding_layer_of GO:0005634 ! nucleus relationship: bounding_layer_of GO:0005634 ! nucleus relationship: part_of GO:0042175 ! nuclear outer membrane-endoplasmic reticulum membrane network -[Term] -id: GO:0005667 -name: transcription regulator complex -namespace: cellular_component -alt_id: GO:0044797 -alt_id: GO:0044798 -def: "A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription." [GOC:jl] -subset: goslim_pir -synonym: "cytoplasmic transcription factor complex" RELATED [] -synonym: "nuclear transcription factor complex" RELATED [] -synonym: "transcription factor complex" RELATED [] -is_a: GO:0032991 ! protein-containing complex -intersection_of: GO:0032991 ! protein-containing complex -intersection_of: capable_of GO:0140110 ! transcription regulator activity -relationship: capable_of GO:0140110 ! transcription regulator activity -created_by: jl -creation_date: 2013-08-28T12:11:37Z - [Term] id: GO:0005694 name: chromosome @@ -45425,7 +45342,7 @@ synonym: "chromatid" RELATED [] synonym: "interphase chromosome" NARROW [] synonym: "prophase chromosome" NARROW [] xref: Wikipedia:Chromosome -is_a: GO:0043232 ! intracellular non-membrane-bounded organelle +is_a: GO:0043232 ! intracellular membraneless organelle relationship: part_of GO:0005622 ! intracellular anatomical structure [Term] @@ -45442,7 +45359,7 @@ subset: goslim_plant subset: goslim_yeast xref: NIF_Subcellular:sao1820400233 xref: Wikipedia:Nucleolus -is_a: GO:0043232 ! intracellular non-membrane-bounded organelle +is_a: GO:0043232 ! intracellular membraneless organelle relationship: part_of GO:0005634 ! nucleus relationship: part_of GO:0031981 ! nuclear lumen @@ -45461,7 +45378,7 @@ subset: goslim_prokaryote subset: goslim_prokaryote_ribbon subset: goslim_yeast xref: Wikipedia:Cytoplasm -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of GO:0005622 ! intracellular anatomical structure property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23023" xsd:anyURI @@ -45566,9 +45483,9 @@ xref: NIF_Subcellular:sao451912436 xref: Wikipedia:Golgi_apparatus is_a: GO:0043231 ! intracellular membrane-bounded organelle relationship: in_taxon NCBITaxon:2759 {all_only="true"} ! Eukaryota -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota relationship: part_of GO:0005737 ! cytoplasm relationship: part_of GO:0012505 ! endomembrane system +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota [Term] id: GO:0005798 @@ -45592,7 +45509,7 @@ subset: goslim_generic synonym: "adiposome" EXACT [] synonym: "lipid body" EXACT [] synonym: "lipid particle" EXACT [] -is_a: GO:0043232 ! intracellular non-membrane-bounded organelle +is_a: GO:0043232 ! intracellular membraneless organelle [Term] id: GO:0005829 @@ -45609,7 +45526,7 @@ subset: goslim_mouse subset: goslim_plant xref: NIF_Subcellular:sao101633890 xref: Wikipedia:Cytosol -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of GO:0005737 ! cytoplasm [Term] @@ -45634,7 +45551,7 @@ synonym: "membrane bound ribosome" NARROW [NIF_Subcellular:sao1291545653] synonym: "ribosomal RNA" RELATED [] xref: NIF_Subcellular:sao1429207766 xref: Wikipedia:Ribosome -is_a: GO:0043232 ! intracellular non-membrane-bounded organelle +is_a: GO:0043232 ! intracellular membraneless organelle relationship: capable_of_part_of GO:0006412 ! translation relationship: has_part CHEBI:33697 ! ribonucleic acid relationship: has_part PR:000000001 ! protein @@ -45658,7 +45575,7 @@ subset: goslim_plant_ribbon subset: goslim_prokaryote subset: goslim_yeast xref: Wikipedia:Cytoskeleton -is_a: GO:0043232 ! intracellular non-membrane-bounded organelle +is_a: GO:0043232 ! intracellular membraneless organelle [Term] id: GO:0005874 @@ -45731,8 +45648,8 @@ xref: NIF_Subcellular:sao1316272517 xref: Wikipedia:Neurofilament is_a: GO:0005882 ! intermediate filament relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: part_of GO:0005737 ! cytoplasm +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa [Term] id: GO:0005884 @@ -45793,8 +45710,8 @@ intersection_of: GO:0032991 ! protein-containing complex intersection_of: capable_of GO:0005009 ! insulin receptor activity relationship: capable_of GO:0005009 ! insulin receptor activity relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: part_of GO:0005886 ! plasma membrane +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa [Term] id: GO:0005902 @@ -45811,6 +45728,18 @@ relationship: has_part GO:0032432 ! actin filament bundle relationship: never_in_taxon NCBITaxon:4751 ! Fungi relationship: part_of CL:0000066 ! epithelial cell +[Term] +id: GO:0005903 +name: brush border +namespace: cellular_component +def: "The dense covering of microvilli on the apical surface of an epithelial cell in tissues such as the intestine, kidney, and choroid plexus; the microvilli aid absorption by increasing the surface area of the cell." [GOC:sl, ISBN:0815316194] +subset: goslim_pir +xref: Wikipedia:Brush_border +is_a: GO:0098862 ! cluster of actin-based cell projections +relationship: has_part GO:0005902 ! microvillus +relationship: never_in_taxon NCBITaxon:4751 ! Fungi +relationship: part_of CL:0000066 ! epithelial cell + [Term] id: GO:0005911 name: cell-cell junction @@ -45862,7 +45791,7 @@ relationship: never_in_taxon NCBITaxon:3378 ! Gnetales relationship: never_in_taxon NCBITaxon:3398 ! Magnoliopsida relationship: never_in_taxon NCBITaxon:4890 ! Ascomycota relationship: never_in_taxon NCBITaxon:5782 ! Dictyostelium -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota [Term] id: GO:0005930 @@ -45878,7 +45807,7 @@ synonym: "cilium axoneme" EXACT [] synonym: "flagellar axoneme" EXACT [] synonym: "flagellum axoneme" EXACT [] xref: Wikipedia:Axoneme -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: has_part GO:0005874 ! microtubule relationship: part_of GO:0005856 ! cytoskeleton relationship: part_of GO:0005929 ! cilium @@ -45924,8 +45853,8 @@ synonym: "carbohydrate metabolism" EXACT [] xref: Wikipedia:Carbohydrate_metabolism is_a: GO:0044238 ! primary metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:16646 ! carbohydrate -relationship: has_primary_input_or_output CHEBI:16646 ! carbohydrate +intersection_of: RO:0004007 CHEBI:16646 ! has primary input or output carbohydrate +relationship: RO:0004007 CHEBI:16646 ! has primary input or output carbohydrate property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22880" xsd:anyURI created_by: jl creation_date: 2012-10-23T15:40:34Z @@ -45944,8 +45873,8 @@ synonym: "polysaccharide metabolism" EXACT [] is_a: GO:0005975 ! carbohydrate metabolic process is_a: GO:0043170 ! macromolecule metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:18154 ! polysaccharide -relationship: has_primary_input_or_output CHEBI:18154 ! polysaccharide +intersection_of: RO:0004007 CHEBI:18154 ! has primary input or output polysaccharide +relationship: RO:0004007 CHEBI:18154 ! has primary input or output polysaccharide [Term] id: GO:0005977 @@ -45956,8 +45885,8 @@ synonym: "glycogen metabolism" EXACT [] is_a: GO:0006112 ! energy reserve metabolic process is_a: GO:0044042 ! glucan metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:28087 ! glycogen -relationship: has_primary_input_or_output CHEBI:28087 ! glycogen +intersection_of: RO:0004007 CHEBI:28087 ! has primary input or output glycogen +relationship: RO:0004007 CHEBI:28087 ! has primary input or output glycogen [Term] id: GO:0005978 @@ -45968,15 +45897,17 @@ synonym: "glycogen anabolism" EXACT [] synonym: "glycogen biosynthesis" EXACT [] synonym: "glycogen formation" EXACT [] synonym: "glycogen synthesis" EXACT [] -xref: MetaCyc:GLYCOGENSYNTH-PWY -xref: MetaCyc:PWY-5067 -xref: MetaCyc:PWY-7900 +xref: MetaCyc:GLYCOGENSYNTH-PWY {source="skos:narrowMatch"} +xref: MetaCyc:PWY-5067 {source="skos:narrowMatch"} +xref: MetaCyc:PWY-7900 {source="skos:narrowMatch"} is_a: GO:0005977 ! glycogen metabolic process is_a: GO:0009250 ! glucan biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:28087 ! glycogen -relationship: has_primary_output CHEBI:28087 ! glycogen +intersection_of: RO:0004008 CHEBI:28087 ! has primary output glycogen +relationship: RO:0004008 CHEBI:28087 ! has primary output glycogen property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27107" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28527" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28968" xsd:anyURI [Term] id: GO:0005979 @@ -45990,8 +45921,8 @@ synonym: "regulation of glycogen synthesis" EXACT [] is_a: GO:0010962 ! regulation of glucan biosynthetic process is_a: GO:0070873 ! regulation of glycogen metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0005978 ! glycogen biosynthetic process -relationship: regulates GO:0005978 ! glycogen biosynthetic process +intersection_of: RO:0002211 GO:0005978 ! regulates (processual) glycogen biosynthetic process +relationship: RO:0002211 GO:0005978 ! regulates (processual) glycogen biosynthetic process [Term] id: GO:0005980 @@ -46002,15 +45933,16 @@ synonym: "glycogen breakdown" EXACT [] synonym: "glycogen catabolism" EXACT [] synonym: "glycogen degradation" EXACT [] synonym: "glycogenolysis" EXACT [GOC:sl] -xref: MetaCyc:GLYCOCAT-PWY -xref: MetaCyc:PWY-5941 -xref: MetaCyc:PWY-7662 +xref: MetaCyc:GLYCOCAT-PWY {source="skos:narrowMatch"} +xref: MetaCyc:PWY-5941 {source="skos:narrowMatch"} +xref: MetaCyc:PWY-7662 {source="skos:narrowMatch"} is_a: GO:0005977 ! glycogen metabolic process is_a: GO:0009251 ! glucan catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:28087 ! glycogen -relationship: has_primary_input CHEBI:28087 ! glycogen +intersection_of: RO:0004009 CHEBI:28087 ! has primary input glycogen +relationship: RO:0004009 CHEBI:28087 ! has primary input glycogen property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27107" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28527" xsd:anyURI [Term] id: GO:0005981 @@ -46024,8 +45956,8 @@ synonym: "regulation of glycogenolysis" EXACT [GOC:sl] is_a: GO:0043470 ! regulation of carbohydrate catabolic process is_a: GO:0070873 ! regulation of glycogen metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0005980 ! glycogen catabolic process -relationship: regulates GO:0005980 ! glycogen catabolic process +intersection_of: RO:0002211 GO:0005980 ! regulates (processual) glycogen catabolic process +relationship: RO:0002211 GO:0005980 ! regulates (processual) glycogen catabolic process [Term] id: GO:0005996 @@ -46036,8 +45968,8 @@ synonym: "monosaccharide metabolism" EXACT [] is_a: GO:0005975 ! carbohydrate metabolic process is_a: GO:0044281 ! small molecule metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:35381 ! monosaccharide -relationship: has_primary_input_or_output CHEBI:35381 ! monosaccharide +intersection_of: RO:0004007 CHEBI:35381 ! has primary input or output monosaccharide +relationship: RO:0004007 CHEBI:35381 ! has primary input or output monosaccharide [Term] id: GO:0006006 @@ -46048,8 +45980,8 @@ synonym: "cellular glucose metabolic process" EXACT [GOC:vw] synonym: "glucose metabolism" EXACT [] is_a: GO:0019318 ! hexose metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:4167 ! D-glucopyranose -relationship: has_primary_input_or_output CHEBI:4167 ! D-glucopyranose +intersection_of: RO:0004007 CHEBI:4167 ! has primary input or output D-glucopyranose +relationship: RO:0004007 CHEBI:4167 ! has primary input or output D-glucopyranose [Term] id: GO:0006007 @@ -46062,8 +45994,8 @@ synonym: "glucose degradation" EXACT [] is_a: GO:0006006 ! glucose metabolic process is_a: GO:0019320 ! hexose catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:4167 ! D-glucopyranose -relationship: has_primary_input CHEBI:4167 ! D-glucopyranose +intersection_of: RO:0004009 CHEBI:4167 ! has primary input D-glucopyranose +relationship: RO:0004009 CHEBI:4167 ! has primary input D-glucopyranose [Term] id: GO:0006014 @@ -46073,8 +46005,8 @@ def: "The chemical reactions and pathways involving D-ribose (ribo-pentose). As synonym: "D-ribose metabolism" EXACT [] is_a: GO:0019321 ! pentose metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:16988 ! D-ribose -relationship: has_primary_input_or_output CHEBI:16988 ! D-ribose +intersection_of: RO:0004007 CHEBI:16988 ! has primary input or output D-ribose +relationship: RO:0004007 CHEBI:16988 ! has primary input or output D-ribose [Term] id: GO:0006022 @@ -46084,10 +46016,9 @@ def: "The chemical reactions and pathways involving aminoglycans, any polymer co synonym: "aminoglycan metabolism" EXACT [] is_a: GO:0043170 ! macromolecule metabolic process is_a: GO:1901135 ! carbohydrate derivative metabolic process -is_a: GO:1901564 ! organonitrogen compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:22506 ! aminoglycan -relationship: has_primary_input_or_output CHEBI:22506 ! aminoglycan +intersection_of: RO:0004007 CHEBI:22506 ! has primary input or output aminoglycan +relationship: RO:0004007 CHEBI:22506 ! has primary input or output aminoglycan [Term] id: GO:0006023 @@ -46101,10 +46032,9 @@ synonym: "aminoglycan synthesis" EXACT [] is_a: GO:0006022 ! aminoglycan metabolic process is_a: GO:0009059 ! macromolecule biosynthetic process is_a: GO:1901137 ! carbohydrate derivative biosynthetic process -is_a: GO:1901566 ! organonitrogen compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:22506 ! aminoglycan -relationship: has_primary_output CHEBI:22506 ! aminoglycan +intersection_of: RO:0004008 CHEBI:22506 ! has primary output aminoglycan +relationship: RO:0004008 CHEBI:22506 ! has primary output aminoglycan [Term] id: GO:0006024 @@ -46118,8 +46048,8 @@ synonym: "glycosaminoglycan synthesis" EXACT [] is_a: GO:0006023 ! aminoglycan biosynthetic process is_a: GO:0030203 ! glycosaminoglycan metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:18085 ! glycosaminoglycan -relationship: has_primary_output CHEBI:18085 ! glycosaminoglycan +intersection_of: RO:0004008 CHEBI:18085 ! has primary output glycosaminoglycan +relationship: RO:0004008 CHEBI:18085 ! has primary output glycosaminoglycan [Term] id: GO:0006026 @@ -46132,10 +46062,9 @@ synonym: "aminoglycan degradation" EXACT [] is_a: GO:0006022 ! aminoglycan metabolic process is_a: GO:0009057 ! macromolecule catabolic process is_a: GO:1901136 ! carbohydrate derivative catabolic process -is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:22506 ! aminoglycan -relationship: has_primary_input CHEBI:22506 ! aminoglycan +intersection_of: RO:0004009 CHEBI:22506 ! has primary input aminoglycan +relationship: RO:0004009 CHEBI:22506 ! has primary input aminoglycan [Term] id: GO:0006027 @@ -46148,8 +46077,8 @@ synonym: "glycosaminoglycan degradation" EXACT [] is_a: GO:0006026 ! aminoglycan catabolic process is_a: GO:0030203 ! glycosaminoglycan metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:18085 ! glycosaminoglycan -relationship: has_primary_input CHEBI:18085 ! glycosaminoglycan +intersection_of: RO:0004009 CHEBI:18085 ! has primary input glycosaminoglycan +relationship: RO:0004009 CHEBI:18085 ! has primary input glycosaminoglycan [Term] id: GO:0006029 @@ -46160,8 +46089,8 @@ synonym: "proteoglycan metabolism" EXACT [] synonym: "proteoglycan sulfate transfer" NARROW [] is_a: GO:0009100 ! glycoprotein metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:37396 ! proteoglycan -relationship: has_primary_input_or_output CHEBI:37396 ! proteoglycan +intersection_of: RO:0004007 CHEBI:37396 ! has primary input or output proteoglycan +relationship: RO:0004007 CHEBI:37396 ! has primary input or output proteoglycan [Term] id: GO:0006030 @@ -46174,8 +46103,8 @@ synonym: "chitin metabolism" EXACT [] is_a: GO:0006022 ! aminoglycan metabolic process is_a: GO:1901071 ! glucosamine-containing compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:17029 ! chitin -relationship: has_primary_input_or_output CHEBI:17029 ! chitin +intersection_of: RO:0004007 CHEBI:17029 ! has primary input or output chitin +relationship: RO:0004007 CHEBI:17029 ! has primary input or output chitin [Term] id: GO:0006031 @@ -46193,8 +46122,8 @@ is_a: GO:0006023 ! aminoglycan biosynthetic process is_a: GO:0006030 ! chitin metabolic process is_a: GO:1901073 ! glucosamine-containing compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:17029 ! chitin -relationship: has_primary_output CHEBI:17029 ! chitin +intersection_of: RO:0004008 CHEBI:17029 ! has primary output chitin +relationship: RO:0004008 CHEBI:17029 ! has primary output chitin property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27107" xsd:anyURI [Term] @@ -46207,17 +46136,18 @@ synonym: "beta-1,4-linked N-acetylglucosamine catabolism" EXACT [] synonym: "chitin breakdown" EXACT [] synonym: "chitin catabolism" EXACT [] synonym: "chitin degradation" EXACT [] -xref: MetaCyc:PWY-6855 -xref: MetaCyc:PWY-6902 -xref: MetaCyc:PWY-7118 -xref: MetaCyc:PWY-7822 +xref: MetaCyc:PWY-6855 {source="skos:narrowMatch"} +xref: MetaCyc:PWY-6902 {source="skos:narrowMatch"} +xref: MetaCyc:PWY-7118 {source="skos:narrowMatch"} +xref: MetaCyc:PWY-7822 {source="skos:narrowMatch"} is_a: GO:0006026 ! aminoglycan catabolic process is_a: GO:0006030 ! chitin metabolic process is_a: GO:1901072 ! glucosamine-containing compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:17029 ! chitin -relationship: has_primary_input CHEBI:17029 ! chitin +intersection_of: RO:0004009 CHEBI:17029 ! has primary input chitin +relationship: RO:0004009 CHEBI:17029 ! has primary input chitin property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27107" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28527" xsd:anyURI [Term] id: GO:0006040 @@ -46229,8 +46159,8 @@ synonym: "aminosaccharide metabolic process" EXACT [] synonym: "aminosaccharide metabolism" EXACT [] is_a: GO:1901135 ! carbohydrate derivative metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:28963 ! amino sugar -relationship: has_primary_input_or_output CHEBI:28963 ! amino sugar +intersection_of: RO:0004007 CHEBI:28963 ! has primary input or output amino sugar +relationship: RO:0004007 CHEBI:28963 ! has primary input or output amino sugar [Term] id: GO:0006066 @@ -46243,22 +46173,23 @@ synonym: "alcohol metabolism" EXACT [] is_a: GO:0044281 ! small molecule metabolic process is_a: GO:1901615 ! organic hydroxy compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:30879 ! alcohol -relationship: has_primary_input_or_output CHEBI:30879 ! alcohol +intersection_of: RO:0004007 CHEBI:30879 ! has primary input or output alcohol +relationship: RO:0004007 CHEBI:30879 ! has primary input or output alcohol [Term] id: GO:0006081 -name: cellular aldehyde metabolic process +name: aldehyde metabolic process namespace: biological_process def: "The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells." [GOC:go_curators, ISBN:0198506732] subset: goslim_pir synonym: "aldehyde metabolism" EXACT [] synonym: "alkanal metabolic process" EXACT [] synonym: "alkanal metabolism" EXACT [] -is_a: GO:0044237 ! cellular metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:17478 ! aldehyde -relationship: has_primary_input_or_output CHEBI:17478 ! aldehyde +intersection_of: RO:0004007 CHEBI:17478 ! has primary input or output aldehyde +relationship: RO:0004007 CHEBI:17478 ! has primary input or output aldehyde +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0006082 @@ -46267,11 +46198,10 @@ namespace: biological_process def: "The chemical reactions and pathways involving organic acids, any acidic compound containing carbon in covalent linkage." [ISBN:0198506732] subset: goslim_pir synonym: "organic acid metabolism" EXACT [] -is_a: GO:0044237 ! cellular metabolic process is_a: GO:0044281 ! small molecule metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:64709 ! organic acid -relationship: has_primary_input_or_output CHEBI:64709 ! organic acid +intersection_of: RO:0004007 CHEBI:64709 ! has primary input or output organic acid +relationship: RO:0004007 CHEBI:64709 ! has primary input or output organic acid [Term] id: GO:0006083 @@ -46281,8 +46211,8 @@ def: "The chemical reactions and pathways involving acetate, the anion of acetic synonym: "acetate metabolism" EXACT [] is_a: GO:0032787 ! monocarboxylic acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:30089 ! acetate -relationship: has_primary_input_or_output CHEBI:30089 ! acetate +intersection_of: RO:0004007 CHEBI:30089 ! has primary input or output acetate +relationship: RO:0004007 CHEBI:30089 ! has primary input or output acetate [Term] id: GO:0006091 @@ -46305,7 +46235,7 @@ subset: goslim_yeast synonym: "energy pathways" BROAD [] synonym: "intermediary metabolism" RELATED [GOC:mah] synonym: "metabolic energy generation" RELATED [] -is_a: GO:0044237 ! cellular metabolic process +is_a: GO:0008152 ! metabolic process [Term] id: GO:0006094 @@ -46314,13 +46244,16 @@ namespace: biological_process def: "The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol." [MetaCyc:GLUCONEO-PWY] synonym: "glucose biosynthesis" EXACT [] synonym: "glucose biosynthetic process" EXACT [] -xref: MetaCyc:GLUCONEO-PWY +xref: MetaCyc:GLUCONEO-PWY {source="skos:narrowMatch"} +xref: MetaCyc:PWY-6142 {source="skos:narrowMatch"} +xref: MetaCyc:PWY66-399 {source="skos:narrowMatch"} xref: Wikipedia:Gluconeogenesis is_a: GO:0006006 ! glucose metabolic process is_a: GO:0019319 ! hexose biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:4167 ! D-glucopyranose -relationship: has_primary_output CHEBI:4167 ! D-glucopyranose +intersection_of: RO:0004008 CHEBI:4167 ! has primary output D-glucopyranose +relationship: RO:0004008 CHEBI:4167 ! has primary output D-glucopyranose +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28953" xsd:anyURI [Term] id: GO:0006109 @@ -46330,8 +46263,8 @@ def: "Any process that modulates the frequency, rate or extent of the chemical r synonym: "regulation of carbohydrate metabolism" EXACT [] is_a: GO:0080090 ! regulation of primary metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0005975 ! carbohydrate metabolic process -relationship: regulates GO:0005975 ! carbohydrate metabolic process +intersection_of: RO:0002211 GO:0005975 ! regulates (processual) carbohydrate metabolic process +relationship: RO:0002211 GO:0005975 ! regulates (processual) carbohydrate metabolic process [Term] id: GO:0006111 @@ -46345,8 +46278,8 @@ synonym: "regulation of glucose biosynthetic process" BROAD [] is_a: GO:0010906 ! regulation of glucose metabolic process is_a: GO:0043255 ! regulation of carbohydrate biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006094 ! gluconeogenesis -relationship: regulates GO:0006094 ! gluconeogenesis +intersection_of: RO:0002211 GO:0006094 ! regulates (processual) gluconeogenesis +relationship: RO:0002211 GO:0006094 ! regulates (processual) gluconeogenesis created_by: tb creation_date: 2013-01-18T12:47:43Z @@ -46384,8 +46317,8 @@ synonym: "nucleobase, nucleoside, nucleotide and nucleic acid metabolic process" synonym: "nucleobase, nucleoside, nucleotide and nucleic acid metabolism" EXACT [] is_a: GO:0044238 ! primary metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:61120 ! nucleobase-containing molecular entity -relationship: has_primary_input_or_output CHEBI:61120 ! nucleobase-containing molecular entity +intersection_of: RO:0004007 CHEBI:61120 ! has primary input or output nucleobase-containing molecular entity +relationship: RO:0004007 CHEBI:61120 ! has primary input or output nucleobase-containing molecular entity [Term] id: GO:0006140 @@ -46397,8 +46330,8 @@ is_a: GO:0019219 ! regulation of nucleobase-containing compound metabolic proces is_a: GO:0019220 ! regulation of phosphate metabolic process is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009117 ! nucleotide metabolic process -relationship: regulates GO:0009117 ! nucleotide metabolic process +intersection_of: RO:0002211 GO:0009117 ! regulates (processual) nucleotide metabolic process +relationship: RO:0002211 GO:0009117 ! regulates (processual) nucleotide metabolic process [Term] id: GO:0006141 @@ -46410,8 +46343,8 @@ synonym: "regulation of purine base metabolism" EXACT [] is_a: GO:0019219 ! regulation of nucleobase-containing compound metabolic process is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006144 ! purine nucleobase metabolic process -relationship: regulates GO:0006144 ! purine nucleobase metabolic process +intersection_of: RO:0002211 GO:0006144 ! regulates (processual) purine nucleobase metabolic process +relationship: RO:0002211 GO:0006144 ! regulates (processual) purine nucleobase metabolic process [Term] id: GO:0006144 @@ -46425,8 +46358,8 @@ synonym: "purine metabolism" NARROW [] is_a: GO:0009112 ! nucleobase metabolic process is_a: GO:0072521 ! purine-containing compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26386 ! purine nucleobase -relationship: has_primary_input_or_output CHEBI:26386 ! purine nucleobase +intersection_of: RO:0004007 CHEBI:26386 ! has primary input or output purine nucleobase +relationship: RO:0004007 CHEBI:26386 ! has primary input or output purine nucleobase [Term] id: GO:0006145 @@ -46441,8 +46374,8 @@ is_a: GO:0006144 ! purine nucleobase metabolic process is_a: GO:0046113 ! nucleobase catabolic process is_a: GO:0072523 ! purine-containing compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:26386 ! purine nucleobase -relationship: has_primary_input CHEBI:26386 ! purine nucleobase +intersection_of: RO:0004009 CHEBI:26386 ! has primary input purine nucleobase +relationship: RO:0004009 CHEBI:26386 ! has primary input purine nucleobase [Term] id: GO:0006146 @@ -46455,8 +46388,8 @@ synonym: "adenine degradation" EXACT [] is_a: GO:0006145 ! purine nucleobase catabolic process is_a: GO:0046083 ! adenine metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:16708 ! adenine -relationship: has_primary_input CHEBI:16708 ! adenine +intersection_of: RO:0004009 CHEBI:16708 ! has primary input adenine +relationship: RO:0004009 CHEBI:16708 ! has primary input adenine [Term] id: GO:0006152 @@ -46470,8 +46403,8 @@ is_a: GO:0009164 ! nucleoside catabolic process is_a: GO:0042278 ! purine nucleoside metabolic process is_a: GO:0072523 ! purine-containing compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:26394 ! purine nucleoside -relationship: has_primary_input CHEBI:26394 ! purine nucleoside +intersection_of: RO:0004009 CHEBI:26394 ! has primary input purine nucleoside +relationship: RO:0004009 CHEBI:26394 ! has primary input purine nucleoside [Term] id: GO:0006154 @@ -46483,11 +46416,13 @@ synonym: "adenosine breakdown" EXACT [] synonym: "adenosine catabolism" EXACT [] synonym: "adenosine degradation" EXACT [] synonym: "adenosine phosphorolysis" RELATED [] +xref: MetaCyc:SALVADEHYPOX-PWY {source="skos:narrowMatch"} is_a: GO:0046085 ! adenosine metabolic process is_a: GO:0046130 ! purine ribonucleoside catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:16335 ! adenosine -relationship: has_primary_input CHEBI:16335 ! adenosine +intersection_of: RO:0004009 CHEBI:16335 ! has primary input adenosine +relationship: RO:0004009 CHEBI:16335 ! has primary input adenosine +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28527" xsd:anyURI [Term] id: GO:0006163 @@ -46500,8 +46435,8 @@ synonym: "purine nucleotide metabolism" EXACT [] is_a: GO:0009117 ! nucleotide metabolic process is_a: GO:0072521 ! purine-containing compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26395 ! purine nucleotide -relationship: has_primary_input_or_output CHEBI:26395 ! purine nucleotide +intersection_of: RO:0004007 CHEBI:26395 ! has primary input or output purine nucleotide +relationship: RO:0004007 CHEBI:26395 ! has primary input or output purine nucleotide [Term] id: GO:0006164 @@ -46517,8 +46452,8 @@ is_a: GO:0006163 ! purine nucleotide metabolic process is_a: GO:0009165 ! nucleotide biosynthetic process is_a: GO:0072522 ! purine-containing compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26395 ! purine nucleotide -relationship: has_primary_output CHEBI:26395 ! purine nucleotide +intersection_of: RO:0004008 CHEBI:26395 ! has primary output purine nucleotide +relationship: RO:0004008 CHEBI:26395 ! has primary output purine nucleotide [Term] id: GO:0006172 @@ -46532,8 +46467,8 @@ synonym: "ADP synthesis" EXACT [] is_a: GO:0009133 ! nucleoside diphosphate biosynthetic process is_a: GO:0046031 ! ADP metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:456216 ! ADP(3-) -relationship: has_primary_output CHEBI:456216 ! ADP(3-) +intersection_of: RO:0004008 CHEBI:456216 ! has primary output ADP(3-) +relationship: RO:0004008 CHEBI:456216 ! has primary output ADP(3-) [Term] id: GO:0006195 @@ -46547,8 +46482,8 @@ is_a: GO:0006163 ! purine nucleotide metabolic process is_a: GO:0009166 ! nucleotide catabolic process is_a: GO:0072523 ! purine-containing compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:26395 ! purine nucleotide -relationship: has_primary_input CHEBI:26395 ! purine nucleotide +intersection_of: RO:0004009 CHEBI:26395 ! has primary input purine nucleotide +relationship: RO:0004009 CHEBI:26395 ! has primary input purine nucleotide [Term] id: GO:0006259 @@ -46569,8 +46504,8 @@ synonym: "cellular DNA metabolism" EXACT [] synonym: "DNA metabolism" EXACT [] is_a: GO:0090304 ! nucleic acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:16991 ! deoxyribonucleic acid -relationship: has_primary_input_or_output CHEBI:16991 ! deoxyribonucleic acid +intersection_of: RO:0004007 CHEBI:16991 ! has primary input or output deoxyribonucleic acid +relationship: RO:0004007 CHEBI:16991 ! has primary input or output deoxyribonucleic acid [Term] id: GO:0006308 @@ -46583,9 +46518,9 @@ synonym: "DNA degradation" EXACT [] is_a: GO:0006259 ! DNA metabolic process is_a: GO:0141188 ! nucleic acid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:16991 ! deoxyribonucleic acid +intersection_of: RO:0004009 CHEBI:16991 ! has primary input deoxyribonucleic acid relationship: has_part GO:0004536 ! DNA nuclease activity -relationship: has_primary_input CHEBI:16991 ! deoxyribonucleic acid +relationship: RO:0004009 CHEBI:16991 ! has primary input deoxyribonucleic acid [Term] id: GO:0006309 @@ -46645,109 +46580,13 @@ synonym: "DNA replication-independent nuclesome assembly" NARROW [] synonym: "establishment of chromatin architecture" EXACT [GOC:mah] synonym: "establishment or maintenance of chromatin architecture" EXACT [GOC:mah] synonym: "transcription-coupled nucleosome assembly" NARROW [] -is_a: GO:0071824 ! protein-DNA complex organization +is_a: GO:0016043 ! cellular component organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0000785 ! chromatin -relationship: results_in_organization_of GO:0000785 ! chromatin +intersection_of: RO:0002592 GO:0000785 ! results in organization of chromatin +relationship: RO:0002592 GO:0000785 ! results in organization of chromatin property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22130" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23549" xsd:anyURI -[Term] -id: GO:0006351 -name: DNA-templated transcription -namespace: biological_process -alt_id: GO:0001121 -alt_id: GO:0006350 -alt_id: GO:0061018 -alt_id: GO:0061022 -def: "The synthesis of an RNA transcript from a DNA template." [GOC:jl, GOC:txnOH] -subset: goslim_drosophila -subset: goslim_euk_cellular_processes_ribbon -subset: goslim_generic -subset: goslim_metagenomics -subset: goslim_mouse -subset: goslim_pir -subset: goslim_pombe -subset: goslim_prokaryote -subset: goslim_prokaryote_ribbon -synonym: "bacterial transcription" NARROW [] -synonym: "cellular transcription" BROAD [] -synonym: "DNA-dependent transcription" EXACT [] -synonym: "transcription" BROAD [] -synonym: "transcription from bacterial-type RNA polymerase promoter" NARROW [] -synonym: "transcription, DNA-dependent" EXACT [GOC:txnOH] -synonym: "transcription, DNA-templated" EXACT [] -xref: Wikipedia:Transcription_(genetics) -is_a: GO:0009059 ! macromolecule biosynthetic process -intersection_of: GO:0009059 ! macromolecule biosynthetic process -intersection_of: has_primary_output SO:0000673 -intersection_of: process_has_causal_agent CHEBI:16991 ! deoxyribonucleic acid -relationship: has_primary_output SO:0000673 -relationship: part_of GO:0010467 ! gene expression -relationship: process_has_causal_agent CHEBI:16991 ! deoxyribonucleic acid -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/14854" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16737" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22258" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22555" xsd:anyURI - -[Term] -id: GO:0006355 -name: regulation of DNA-templated transcription -namespace: biological_process -alt_id: GO:0032583 -alt_id: GO:0045449 -alt_id: GO:0061019 -def: "Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription." [GOC:go_curators, GOC:txnOH] -subset: goslim_drosophila -subset: goslim_generic -subset: goslim_prokaryote -subset: goslim_prokaryote_ribbon -synonym: "regulation of cellular transcription, DNA-dependent" EXACT [] -synonym: "regulation of gene-specific transcription" RELATED [] -synonym: "regulation of transcription, DNA-dependent" EXACT [GOC:txnOH] -synonym: "regulation of transcription, DNA-templated" EXACT [] -synonym: "transcriptional control" BROAD [] -is_a: GO:0010468 ! regulation of gene expression -intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006351 ! DNA-templated transcription -relationship: regulates GO:0006351 ! DNA-templated transcription -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/25256" xsd:anyURI - -[Term] -id: GO:0006357 -name: regulation of transcription by RNA polymerase II -namespace: biological_process -alt_id: GO:0006358 -alt_id: GO:0010551 -def: "Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II." [GOC:go_curators, GOC:txnOH] -synonym: "global transcription regulation from Pol II promoter" RELATED [] -synonym: "regulation of gene-specific transcription from RNA polymerase II promoter" RELATED [] -synonym: "regulation of global transcription from Pol II promoter" RELATED [] -synonym: "regulation of transcription from Pol II promoter" EXACT [] -synonym: "regulation of transcription from RNA polymerase II promoter" EXACT [] -synonym: "regulation of transcription from RNA polymerase II promoter, global" RELATED [] -is_a: GO:0006355 ! regulation of DNA-templated transcription -intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006366 ! transcription by RNA polymerase II -relationship: regulates GO:0006366 ! transcription by RNA polymerase II - -[Term] -id: GO:0006366 -name: transcription by RNA polymerase II -namespace: biological_process -alt_id: GO:0032568 -alt_id: GO:0032569 -def: "The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs)." [GOC:jl, GOC:txnOH, ISBN:0321000382] -subset: goslim_yeast -synonym: "gene-specific transcription from RNA polymerase II promoter" RELATED [] -synonym: "general transcription from RNA polymerase II promoter" RELATED [] -synonym: "RNA polymerase II transcription factor activity" RELATED [] -synonym: "specific transcription from RNA polymerase II promoter" RELATED [GOC:mah] -synonym: "transcription from Pol II promoter" EXACT [] -synonym: "transcription from RNA polymerase II promoter" EXACT [] -is_a: GO:0006351 ! DNA-templated transcription -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/14854" xsd:anyURI - [Term] id: GO:0006401 name: RNA catabolic process @@ -46760,8 +46599,8 @@ synonym: "RNA degradation" EXACT [] is_a: GO:0016070 ! RNA metabolic process is_a: GO:0141188 ! nucleic acid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:33697 ! ribonucleic acid -relationship: has_primary_input CHEBI:33697 ! ribonucleic acid +intersection_of: RO:0004009 CHEBI:33697 ! has primary input ribonucleic acid +relationship: RO:0004009 CHEBI:33697 ! has primary input ribonucleic acid [Term] id: GO:0006403 @@ -46784,14 +46623,14 @@ synonym: "RNA-nucleus import" EXACT [] is_a: GO:0050658 ! RNA transport is_a: GO:0051170 ! import into nucleus intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:33697 ! ribonucleic acid -intersection_of: has_target_end_location GO:0031981 ! nuclear lumen -intersection_of: has_target_start_location GO:0005829 ! cytosol -intersection_of: results_in_transport_across GO:0005635 ! nuclear envelope -relationship: has_primary_input CHEBI:33697 ! ribonucleic acid -relationship: has_target_end_location GO:0031981 ! nuclear lumen -relationship: has_target_start_location GO:0005829 ! cytosol -relationship: results_in_transport_across GO:0005635 ! nuclear envelope +intersection_of: RO:0002338 GO:0005829 ! has target start location cytosol +intersection_of: RO:0002339 GO:0031981 ! has target end location nuclear lumen +intersection_of: RO:0002342 GO:0005635 ! results in transport across nuclear envelope +intersection_of: RO:0004009 CHEBI:33697 ! has primary input ribonucleic acid +relationship: RO:0002338 GO:0005829 ! has target start location cytosol +relationship: RO:0002339 GO:0031981 ! has target end location nuclear lumen +relationship: RO:0002342 GO:0005635 ! results in transport across nuclear envelope +relationship: RO:0004009 CHEBI:33697 ! has primary input ribonucleic acid [Term] id: GO:0006405 @@ -46805,14 +46644,14 @@ synonym: "RNA-nucleus export" EXACT [] is_a: GO:0050658 ! RNA transport is_a: GO:0051168 ! nuclear export intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:33697 ! ribonucleic acid -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0031981 ! nuclear lumen -intersection_of: results_in_transport_across GO:0005635 ! nuclear envelope -relationship: has_primary_input CHEBI:33697 ! ribonucleic acid -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0031981 ! nuclear lumen -relationship: results_in_transport_across GO:0005635 ! nuclear envelope +intersection_of: RO:0002338 GO:0031981 ! has target start location nuclear lumen +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005635 ! results in transport across nuclear envelope +intersection_of: RO:0004009 CHEBI:33697 ! has primary input ribonucleic acid +relationship: RO:0002338 GO:0031981 ! has target start location nuclear lumen +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005635 ! results in transport across nuclear envelope +relationship: RO:0004009 CHEBI:33697 ! has primary input ribonucleic acid [Term] id: GO:0006412 @@ -46841,12 +46680,12 @@ xref: Wikipedia:Translation_(genetics) is_a: GO:0009059 ! macromolecule biosynthetic process is_a: GO:0019538 ! protein metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:36080 ! protein intersection_of: part_of GO:0010467 ! gene expression +intersection_of: RO:0004008 CHEBI:36080 ! has primary output protein relationship: ends_with GO:0006415 ! translational termination relationship: has_part GO:0006414 ! translational elongation -relationship: has_primary_output CHEBI:36080 ! protein relationship: part_of GO:0010467 ! gene expression +relationship: RO:0004008 CHEBI:36080 ! has primary output protein relationship: starts_with GO:0006413 ! translational initiation [Term] @@ -46861,7 +46700,7 @@ synonym: "biopolymerisation" BROAD [] synonym: "biopolymerization" BROAD [] synonym: "protein synthesis initiation" BROAD [] synonym: "translation initiation" EXACT [] -is_a: GO:0044237 ! cellular metabolic process +is_a: GO:0008152 ! metabolic process relationship: part_of GO:0006412 ! translation relationship: starts_with GO:0001677 ! formation of translation initiation ternary complex @@ -46905,8 +46744,8 @@ synonym: "regulation of protein synthesis" EXACT [] is_a: GO:0010608 ! post-transcriptional regulation of gene expression is_a: GO:0051246 ! regulation of protein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006412 ! translation -relationship: regulates GO:0006412 ! translation +intersection_of: RO:0002211 GO:0006412 ! regulates (processual) translation +relationship: RO:0002211 GO:0006412 ! regulates (processual) translation [Term] id: GO:0006446 @@ -46915,9 +46754,9 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of translational initiation." [GOC:go_curators] is_a: GO:0006417 ! regulation of translation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006413 ! translational initiation -relationship: regulates GO:0006412 ! translation -relationship: regulates GO:0006413 ! translational initiation +intersection_of: RO:0002211 GO:0006413 ! regulates (processual) translational initiation +relationship: RO:0002211 GO:0006412 ! regulates (processual) translation +relationship: RO:0002211 GO:0006413 ! regulates (processual) translational initiation [Term] id: GO:0006448 @@ -46926,9 +46765,9 @@ namespace: biological_process def: "Any process that modulates the frequency, rate, extent or accuracy of translational elongation." [GOC:go_curators] is_a: GO:0006417 ! regulation of translation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006414 ! translational elongation -relationship: regulates GO:0006412 ! translation -relationship: regulates GO:0006414 ! translational elongation +intersection_of: RO:0002211 GO:0006414 ! regulates (processual) translational elongation +relationship: RO:0002211 GO:0006412 ! regulates (processual) translation +relationship: RO:0002211 GO:0006414 ! regulates (processual) translational elongation [Term] id: GO:0006449 @@ -46938,16 +46777,16 @@ def: "Any process that modulates the frequency, rate or extent of translational is_a: GO:0006417 ! regulation of translation is_a: GO:0043244 ! regulation of protein-containing complex disassembly intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006415 ! translational termination -relationship: regulates GO:0006412 ! translation -relationship: regulates GO:0006415 ! translational termination +intersection_of: RO:0002211 GO:0006415 ! regulates (processual) translational termination +relationship: RO:0002211 GO:0006412 ! regulates (processual) translation +relationship: RO:0002211 GO:0006415 ! regulates (processual) translational termination [Term] id: GO:0006468 name: protein phosphorylation namespace: biological_process def: "The process of introducing a phosphate group on to a protein." [GOC:hb] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate subset: goslim_yeast synonym: "protein amino acid phosphorylation" EXACT [GOC:bf] is_a: GO:0016310 ! phosphorylation @@ -46958,7 +46797,7 @@ id: GO:0006469 name: negative regulation of protein kinase activity namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate or extent of protein kinase activity." [GOC:go_curators] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "down regulation of protein kinase activity" EXACT [] synonym: "down-regulation of protein kinase activity" EXACT [] synonym: "downregulation of protein kinase activity" EXACT [] @@ -46967,8 +46806,8 @@ is_a: GO:0001933 ! negative regulation of protein phosphorylation is_a: GO:0033673 ! negative regulation of kinase activity is_a: GO:0045859 ! regulation of protein kinase activity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0004672 ! protein kinase activity -relationship: negatively_regulates GO:0004672 ! protein kinase activity +intersection_of: RO:0002212 GO:0004672 ! negatively regulates protein kinase activity +relationship: RO:0002212 GO:0004672 ! negatively regulates protein kinase activity [Term] id: GO:0006508 @@ -46996,8 +46835,8 @@ is_a: GO:0009057 ! macromolecule catabolic process is_a: GO:0009100 ! glycoprotein metabolic process is_a: GO:1901136 ! carbohydrate derivative catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:17089 ! glycoprotein -relationship: has_primary_input CHEBI:17089 ! glycoprotein +intersection_of: RO:0004009 CHEBI:17089 ! has primary input glycoprotein +relationship: RO:0004009 CHEBI:17089 ! has primary input glycoprotein [Term] id: GO:0006518 @@ -47008,8 +46847,8 @@ subset: goslim_pir synonym: "peptide metabolism" EXACT [] is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:60466 ! peptide zwitterion -relationship: has_primary_input_or_output CHEBI:60466 ! peptide zwitterion +intersection_of: RO:0004007 CHEBI:60466 ! has primary input or output peptide zwitterion +relationship: RO:0004007 CHEBI:60466 ! has primary input or output peptide zwitterion [Term] id: GO:0006520 @@ -47031,22 +46870,21 @@ synonym: "cellular amino acid metabolic process" EXACT [] synonym: "cellular amino acid metabolism" EXACT [] is_a: GO:0044238 ! primary metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:35238 ! amino acid zwitterion -relationship: has_primary_input_or_output CHEBI:35238 ! amino acid zwitterion +intersection_of: RO:0004007 CHEBI:35238 ! has primary input or output amino-acid zwitterion +relationship: RO:0004007 CHEBI:35238 ! has primary input or output amino-acid zwitterion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/17904" xsd:anyURI [Term] id: GO:0006521 -name: regulation of cellular amino acid metabolic process +name: regulation of amino acid metabolic process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amino acids." [GOC:go_curators] synonym: "regulation of amino acid metabolism" EXACT [] -is_a: GO:0010565 ! regulation of cellular ketone metabolic process -is_a: GO:0033238 ! regulation of amine metabolic process is_a: GO:0080090 ! regulation of primary metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006520 ! amino acid metabolic process -relationship: regulates GO:0006520 ! amino acid metabolic process +intersection_of: RO:0002211 GO:0006520 ! regulates (processual) amino acid metabolic process +relationship: RO:0002211 GO:0006520 ! regulates (processual) amino acid metabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0006536 @@ -47060,8 +46898,8 @@ xref: Wikipedia:Glutamic_acid is_a: GO:0009064 ! glutamine family amino acid metabolic process is_a: GO:0043648 ! dicarboxylic acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:14321 ! glutamate(1-) -relationship: has_primary_input_or_output CHEBI:14321 ! glutamate(1-) +intersection_of: RO:0004007 CHEBI:14321 ! has primary input or output glutamate(1-) +relationship: RO:0004007 CHEBI:14321 ! has primary input or output glutamate(1-) [Term] id: GO:0006537 @@ -47082,8 +46920,8 @@ is_a: GO:0006536 ! glutamate metabolic process is_a: GO:0009084 ! glutamine family amino acid biosynthetic process is_a: GO:0046394 ! carboxylic acid biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:14321 ! glutamate(1-) -relationship: has_primary_output CHEBI:14321 ! glutamate(1-) +intersection_of: RO:0004008 CHEBI:14321 ! has primary output glutamate(1-) +relationship: RO:0004008 CHEBI:14321 ! has primary output glutamate(1-) [Term] id: GO:0006538 @@ -47101,8 +46939,8 @@ is_a: GO:0006536 ! glutamate metabolic process is_a: GO:0009065 ! glutamine family amino acid catabolic process is_a: GO:0046395 ! carboxylic acid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:14321 ! glutamate(1-) -relationship: has_primary_input CHEBI:14321 ! glutamate(1-) +intersection_of: RO:0004009 CHEBI:14321 ! has primary input glutamate(1-) +relationship: RO:0004009 CHEBI:14321 ! has primary input glutamate(1-) [Term] id: GO:0006558 @@ -47114,8 +46952,8 @@ synonym: "phenylalanine metabolic process" BROAD [] synonym: "phenylalanine metabolism" BROAD [] is_a: GO:0006520 ! amino acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:58095 ! L-phenylalanine zwitterion -relationship: has_primary_input_or_output CHEBI:58095 ! L-phenylalanine zwitterion +intersection_of: RO:0004007 CHEBI:58095 ! has primary input or output L-phenylalanine zwitterion +relationship: RO:0004007 CHEBI:58095 ! has primary input or output L-phenylalanine zwitterion [Term] id: GO:0006559 @@ -47130,8 +46968,8 @@ synonym: "phenylalanine catabolism" BROAD [] is_a: GO:0006558 ! L-phenylalanine metabolic process is_a: GO:0009063 ! amino acid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:58095 ! L-phenylalanine zwitterion -relationship: has_primary_input CHEBI:58095 ! L-phenylalanine zwitterion +intersection_of: RO:0004009 CHEBI:58095 ! has primary input L-phenylalanine zwitterion +relationship: RO:0004009 CHEBI:58095 ! has primary input L-phenylalanine zwitterion [Term] id: GO:0006570 @@ -47143,8 +46981,8 @@ xref: UM-BBD_pathwayID:tyr xref: Wikipedia:Tyrosine is_a: GO:0006520 ! amino acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:58315 ! L-tyrosine zwitterion -relationship: has_primary_input_or_output CHEBI:58315 ! L-tyrosine zwitterion +intersection_of: RO:0004007 CHEBI:58315 ! has primary input or output L-tyrosine zwitterion +relationship: RO:0004007 CHEBI:58315 ! has primary input or output L-tyrosine zwitterion [Term] id: GO:0006571 @@ -47159,8 +46997,8 @@ is_a: GO:0006570 ! tyrosine metabolic process is_a: GO:0008652 ! amino acid biosynthetic process is_a: GO:0009095 ! aromatic amino acid family biosynthetic process, prephenate pathway intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:58315 ! L-tyrosine zwitterion -relationship: has_primary_output CHEBI:58315 ! L-tyrosine zwitterion +intersection_of: RO:0004008 CHEBI:58315 ! has primary output L-tyrosine zwitterion +relationship: RO:0004008 CHEBI:58315 ! has primary output L-tyrosine zwitterion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20583" xsd:anyURI [Term] @@ -47174,12 +47012,12 @@ synonym: "tyrosine degradation" EXACT [] is_a: GO:0006570 ! tyrosine metabolic process is_a: GO:0009063 ! amino acid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:58315 ! L-tyrosine zwitterion -relationship: has_primary_input CHEBI:58315 ! L-tyrosine zwitterion +intersection_of: RO:0004009 CHEBI:58315 ! has primary input L-tyrosine zwitterion +relationship: RO:0004009 CHEBI:58315 ! has primary input L-tyrosine zwitterion [Term] id: GO:0006575 -name: cellular modified amino acid metabolic process +name: modified amino acid metabolic process namespace: biological_process def: "The chemical reactions and pathways involving compounds derived from amino acids, organic acids containing one or more amino substituents." [GOC:ai] subset: goslim_drosophila @@ -47188,14 +47026,14 @@ subset: goslim_prokaryote synonym: "amino acid derivative metabolic process" EXACT [] synonym: "cellular amino acid derivative metabolic process" EXACT [] synonym: "cellular amino acid derivative metabolism" EXACT [] +synonym: "cellular modified amino acid metabolic process" EXACT [GOC:mah] synonym: "cellular modified amino acid metabolism" EXACT [GOC:mah] -synonym: "modified amino acid metabolic process" EXACT [GOC:mah] synonym: "modified amino acid metabolism" EXACT [GOC:mah] -is_a: GO:0044237 ! cellular metabolic process -is_a: GO:1901564 ! organonitrogen compound metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:83821 ! amino acid derivative -relationship: has_primary_input_or_output CHEBI:83821 ! amino acid derivative +intersection_of: RO:0004007 CHEBI:83821 ! has primary input or output amino-acid derivative +relationship: RO:0004007 CHEBI:83821 ! has primary input or output amino-acid derivative +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0006576 @@ -47217,8 +47055,8 @@ synonym: "acetylcholine degradation" EXACT [] is_a: GO:0008291 ! acetylcholine metabolic process is_a: GO:0009056 ! catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:15355 ! acetylcholine -relationship: has_primary_input CHEBI:15355 ! acetylcholine +intersection_of: RO:0004009 CHEBI:15355 ! has primary input acetylcholine +relationship: RO:0004009 CHEBI:15355 ! has primary input acetylcholine [Term] id: GO:0006584 @@ -47229,8 +47067,8 @@ synonym: "catecholamine metabolism" EXACT [] is_a: GO:0006576 ! biogenic amine metabolic process is_a: GO:0009712 ! catechol-containing compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:33567 ! catecholamine -relationship: has_primary_input_or_output CHEBI:33567 ! catecholamine +intersection_of: RO:0004007 CHEBI:33567 ! has primary input or output catecholamine +relationship: RO:0004007 CHEBI:33567 ! has primary input or output catecholamine [Term] id: GO:0006585 @@ -47243,10 +47081,10 @@ synonym: "dopamine synthesis from tyrosine" EXACT [] is_a: GO:0006570 ! tyrosine metabolic process is_a: GO:0042416 ! dopamine biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_input CHEBI:58315 ! L-tyrosine zwitterion -intersection_of: has_primary_output CHEBI:59905 ! dopaminium(1+) -relationship: has_primary_input CHEBI:58315 ! L-tyrosine zwitterion -relationship: has_primary_output CHEBI:59905 ! dopaminium(1+) +intersection_of: RO:0004008 CHEBI:59905 ! has primary output dopaminium(1+) +intersection_of: RO:0004009 CHEBI:58315 ! has primary input L-tyrosine zwitterion +relationship: RO:0004008 CHEBI:59905 ! has primary output dopaminium(1+) +relationship: RO:0004009 CHEBI:58315 ! has primary input L-tyrosine zwitterion [Term] id: GO:0006586 @@ -47259,8 +47097,8 @@ synonym: "indolamine metabolism" BROAD [] is_a: GO:0006576 ! biogenic amine metabolic process is_a: GO:0042430 ! indole-containing compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:38631 ! aminoalkylindole -relationship: has_primary_input_or_output CHEBI:38631 ! aminoalkylindole +intersection_of: RO:0004007 CHEBI:38631 ! has primary input or output aminoalkylindole +relationship: RO:0004007 CHEBI:38631 ! has primary input or output aminoalkylindole [Term] id: GO:0006590 @@ -47284,14 +47122,14 @@ is_a: GO:0034504 ! protein localization to nucleus is_a: GO:0051170 ! import into nucleus is_a: GO:0072594 ! establishment of protein localization to organelle intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input PR:000000001 ! protein -intersection_of: has_target_end_location GO:0031981 ! nuclear lumen -intersection_of: has_target_start_location GO:0005829 ! cytosol -intersection_of: results_in_transport_across GO:0005635 ! nuclear envelope -relationship: has_primary_input PR:000000001 ! protein -relationship: has_target_end_location GO:0031981 ! nuclear lumen -relationship: has_target_start_location GO:0005829 ! cytosol -relationship: results_in_transport_across GO:0005635 ! nuclear envelope +intersection_of: RO:0002338 GO:0005829 ! has target start location cytosol +intersection_of: RO:0002339 GO:0031981 ! has target end location nuclear lumen +intersection_of: RO:0002342 GO:0005635 ! results in transport across nuclear envelope +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: RO:0002338 GO:0005829 ! has target start location cytosol +relationship: RO:0002339 GO:0031981 ! has target end location nuclear lumen +relationship: RO:0002342 GO:0005635 ! results in transport across nuclear envelope +relationship: RO:0004009 PR:000000001 ! has primary input protein [Term] id: GO:0006611 @@ -47307,14 +47145,14 @@ synonym: "protein-nucleus export" EXACT [] is_a: GO:0006886 ! intracellular protein transport is_a: GO:0051168 ! nuclear export intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input PR:000000001 ! protein -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0031981 ! nuclear lumen -intersection_of: results_in_transport_across GO:0005635 ! nuclear envelope -relationship: has_primary_input PR:000000001 ! protein -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0031981 ! nuclear lumen -relationship: results_in_transport_across GO:0005635 ! nuclear envelope +intersection_of: RO:0002338 GO:0031981 ! has target start location nuclear lumen +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005635 ! results in transport across nuclear envelope +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: RO:0002338 GO:0031981 ! has target start location nuclear lumen +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005635 ! results in transport across nuclear envelope +relationship: RO:0004009 PR:000000001 ! has primary input protein [Term] id: GO:0006624 @@ -47325,8 +47163,8 @@ synonym: "vacuolar protein maturation" RELATED [] synonym: "vacuolar proteolysis" RELATED [] is_a: GO:0016485 ! protein processing intersection_of: GO:0016485 ! protein processing -intersection_of: occurs_in GO:0005773 ! vacuole -relationship: occurs_in GO:0005773 ! vacuole +intersection_of: BFO:0000066 GO:0005773 ! occurs in vacuole +relationship: BFO:0000066 GO:0005773 ! occurs in vacuole [Term] id: GO:0006629 @@ -47352,8 +47190,8 @@ synonym: "lipid metabolism" EXACT [] xref: Wikipedia:Lipid_metabolism is_a: GO:0044238 ! primary metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:18059 ! lipid -relationship: has_primary_input_or_output CHEBI:18059 ! lipid +intersection_of: RO:0004007 CHEBI:18059 ! has primary input or output lipid +relationship: RO:0004007 CHEBI:18059 ! has primary input or output lipid [Term] id: GO:0006631 @@ -47362,11 +47200,12 @@ namespace: biological_process def: "The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis." [ISBN:0198547684] synonym: "fatty acid metabolism" EXACT [] xref: Wikipedia:Fatty_acid_metabolism +is_a: GO:0006629 ! lipid metabolic process is_a: GO:0032787 ! monocarboxylic acid metabolic process -is_a: GO:0044255 ! cellular lipid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:28868 ! fatty acid anion -relationship: has_primary_input_or_output CHEBI:28868 ! fatty acid anion +intersection_of: RO:0004007 CHEBI:28868 ! has primary input or output fatty acid anion +relationship: RO:0004007 CHEBI:28868 ! has primary input or output fatty acid anion +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0006633 @@ -47378,16 +47217,17 @@ synonym: "fatty acid anabolism" EXACT [] synonym: "fatty acid biosynthesis" EXACT [] synonym: "fatty acid formation" EXACT [] synonym: "fatty acid synthesis" EXACT [] -xref: MetaCyc:FASYN-INITIAL-PWY -xref: MetaCyc:PWY-4381 -xref: MetaCyc:PWY-5156 +xref: MetaCyc:FASYN-INITIAL-PWY {source="skos:narrowMatch"} +xref: MetaCyc:PWY-4381 {source="skos:narrowMatch"} +xref: MetaCyc:PWY-5156 {source="skos:narrowMatch"} xref: Wikipedia:Fatty_acid_synthesis is_a: GO:0006631 ! fatty acid metabolic process is_a: GO:0008610 ! lipid biosynthetic process is_a: GO:0072330 ! monocarboxylic acid biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:28868 ! fatty acid anion -relationship: has_primary_output CHEBI:28868 ! fatty acid anion +intersection_of: RO:0004008 CHEBI:28868 ! has primary output fatty acid anion +relationship: RO:0004008 CHEBI:28868 ! has primary output fatty acid anion +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28527" xsd:anyURI [Term] id: GO:0006643 @@ -47395,7 +47235,13 @@ name: membrane lipid metabolic process namespace: biological_process def: "The chemical reactions and pathways involving membrane lipids, any lipid found in or associated with a biological membrane." [GOC:ai] synonym: "membrane lipid metabolism" EXACT [] -is_a: GO:0044255 ! cellular lipid metabolic process +is_a: GO:0006629 ! lipid metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: BFO:0000066 GO:0016020 ! occurs in membrane +intersection_of: RO:0004007 CHEBI:18059 ! has primary input or output lipid +relationship: BFO:0000066 GO:0016020 ! occurs in membrane +relationship: RO:0004007 CHEBI:18059 ! has primary input or output lipid +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0006644 @@ -47403,12 +47249,13 @@ name: phospholipid metabolic process namespace: biological_process def: "The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester." [ISBN:0198506732] synonym: "phospholipid metabolism" EXACT [] +is_a: GO:0006629 ! lipid metabolic process is_a: GO:0006796 ! phosphate-containing compound metabolic process is_a: GO:0019637 ! organophosphate metabolic process -is_a: GO:0044255 ! cellular lipid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:16247 ! phospholipid -relationship: has_primary_input_or_output CHEBI:16247 ! phospholipid +intersection_of: RO:0004007 CHEBI:16247 ! has primary input or output phospholipid +relationship: RO:0004007 CHEBI:16247 ! has primary input or output phospholipid +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0006664 @@ -47419,8 +47266,8 @@ synonym: "glycolipid metabolism" EXACT [] is_a: GO:0006643 ! membrane lipid metabolic process is_a: GO:1903509 ! liposaccharide metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:33563 ! glycolipid -relationship: has_primary_input_or_output CHEBI:33563 ! glycolipid +intersection_of: RO:0004007 CHEBI:33563 ! has primary input or output glycolipid +relationship: RO:0004007 CHEBI:33563 ! has primary input or output glycolipid [Term] id: GO:0006665 @@ -47429,10 +47276,9 @@ namespace: biological_process def: "The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid)." [GOC:mah, ISBN:0198506732] synonym: "sphingolipid metabolism" EXACT [] is_a: GO:0006643 ! membrane lipid metabolic process -is_a: GO:1901564 ! organonitrogen compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26739 ! sphingolipid -relationship: has_primary_input_or_output CHEBI:26739 ! sphingolipid +intersection_of: RO:0004007 CHEBI:26739 ! has primary input or output sphingolipid +relationship: RO:0004007 CHEBI:26739 ! has primary input or output sphingolipid [Term] id: GO:0006672 @@ -47443,8 +47289,8 @@ synonym: "ceramide metabolism" EXACT [] is_a: GO:0006665 ! sphingolipid metabolic process is_a: GO:0043603 ! amide metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:17761 ! ceramide -relationship: has_primary_input_or_output CHEBI:17761 ! ceramide +intersection_of: RO:0004007 CHEBI:17761 ! has primary input or output ceramide +relationship: RO:0004007 CHEBI:17761 ! has primary input or output ceramide [Term] id: GO:0006677 @@ -47455,8 +47301,8 @@ synonym: "glycosylceramide metabolism" EXACT [] is_a: GO:0006672 ! ceramide metabolic process is_a: GO:0006687 ! glycosphingolipid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:62941 ! glycosylceramide -relationship: has_primary_input_or_output CHEBI:62941 ! glycosylceramide +intersection_of: RO:0004007 CHEBI:62941 ! has primary input or output glycosylceramide +relationship: RO:0004007 CHEBI:62941 ! has primary input or output glycosylceramide [Term] id: GO:0006681 @@ -47467,8 +47313,8 @@ synonym: "galactosylceramide metabolism" EXACT [] is_a: GO:0006677 ! glycosylceramide metabolic process is_a: GO:0019374 ! galactolipid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:36498 ! galactosylceramide -relationship: has_primary_input_or_output CHEBI:36498 ! galactosylceramide +intersection_of: RO:0004007 CHEBI:36498 ! has primary input or output galactosylceramide +relationship: RO:0004007 CHEBI:36498 ! has primary input or output galactosylceramide [Term] id: GO:0006682 @@ -47483,8 +47329,8 @@ is_a: GO:0006681 ! galactosylceramide metabolic process is_a: GO:0019375 ! galactolipid biosynthetic process is_a: GO:0046476 ! glycosylceramide biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:36498 ! galactosylceramide -relationship: has_primary_output CHEBI:36498 ! galactosylceramide +intersection_of: RO:0004008 CHEBI:36498 ! has primary output galactosylceramide +relationship: RO:0004008 CHEBI:36498 ! has primary output galactosylceramide [Term] id: GO:0006683 @@ -47498,8 +47344,8 @@ is_a: GO:0006681 ! galactosylceramide metabolic process is_a: GO:0019376 ! galactolipid catabolic process is_a: GO:0046477 ! glycosylceramide catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:36498 ! galactosylceramide -relationship: has_primary_input CHEBI:36498 ! galactosylceramide +intersection_of: RO:0004009 CHEBI:36498 ! has primary input galactosylceramide +relationship: RO:0004009 CHEBI:36498 ! has primary input galactosylceramide [Term] id: GO:0006687 @@ -47510,8 +47356,8 @@ synonym: "glycosphingolipid metabolism" EXACT [] is_a: GO:0006664 ! glycolipid metabolic process is_a: GO:0006665 ! sphingolipid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:24402 ! glycosphingolipid -relationship: has_primary_input_or_output CHEBI:24402 ! glycosphingolipid +intersection_of: RO:0004007 CHEBI:24402 ! has primary input or output glycosphingolipid +relationship: RO:0004007 CHEBI:24402 ! has primary input or output glycosphingolipid [Term] id: GO:0006688 @@ -47526,8 +47372,8 @@ is_a: GO:0006687 ! glycosphingolipid metabolic process is_a: GO:0009247 ! glycolipid biosynthetic process is_a: GO:0030148 ! sphingolipid biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:24402 ! glycosphingolipid -relationship: has_primary_output CHEBI:24402 ! glycosphingolipid +intersection_of: RO:0004008 CHEBI:24402 ! has primary output glycosphingolipid +relationship: RO:0004008 CHEBI:24402 ! has primary output glycosphingolipid [Term] id: GO:0006694 @@ -47543,8 +47389,8 @@ xref: Wikipedia:Steroid_metabolisms#Steroid_biosynthesis is_a: GO:0008202 ! steroid metabolic process is_a: GO:0008610 ! lipid biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:35341 ! steroid -relationship: has_primary_output CHEBI:35341 ! steroid +intersection_of: RO:0004008 CHEBI:35341 ! has primary output steroid +relationship: RO:0004008 CHEBI:35341 ! has primary output steroid [Term] id: GO:0006699 @@ -47560,10 +47406,10 @@ is_a: GO:0008206 ! bile acid metabolic process is_a: GO:0072330 ! monocarboxylic acid biosynthetic process is_a: GO:1901617 ! organic hydroxy compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:36235 ! bile acid anion -relationship: has_primary_output CHEBI:36235 ! bile acid anion +intersection_of: RO:0004008 CHEBI:36235 ! has primary output bile acid anion relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa +relationship: RO:0004008 CHEBI:36235 ! has primary output bile acid anion [Term] id: GO:0006700 @@ -47576,11 +47422,10 @@ synonym: "C21-steroid hormone formation" EXACT [] synonym: "C21-steroid hormone synthesis" EXACT [] is_a: GO:0008207 ! C21-steroid hormone metabolic process is_a: GO:0042446 ! hormone biosynthetic process -is_a: GO:0044249 ! cellular biosynthetic process is_a: GO:0120178 ! steroid hormone biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:64600 ! C21-steroid hormone -relationship: has_primary_output CHEBI:64600 ! C21-steroid hormone +intersection_of: RO:0004008 CHEBI:64600 ! has primary output C21-steroid hormone +relationship: RO:0004008 CHEBI:64600 ! has primary output C21-steroid hormone [Term] id: GO:0006701 @@ -47596,8 +47441,8 @@ is_a: GO:0042181 ! ketone biosynthetic process is_a: GO:0042448 ! progesterone metabolic process is_a: GO:0120255 ! olefinic compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:17026 ! progesterone -relationship: has_primary_output CHEBI:17026 ! progesterone +intersection_of: RO:0004008 CHEBI:17026 ! has primary output progesterone +relationship: RO:0004008 CHEBI:17026 ! has primary output progesterone [Term] id: GO:0006704 @@ -47611,8 +47456,8 @@ synonym: "glucocorticoid synthesis" EXACT [] is_a: GO:0008211 ! glucocorticoid metabolic process is_a: GO:0120178 ! steroid hormone biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:24261 ! glucocorticoid -relationship: has_primary_output CHEBI:24261 ! glucocorticoid +intersection_of: RO:0004008 CHEBI:24261 ! has primary output glucocorticoid +relationship: RO:0004008 CHEBI:24261 ! has primary output glucocorticoid [Term] id: GO:0006705 @@ -47627,8 +47472,8 @@ is_a: GO:0008212 ! mineralocorticoid metabolic process is_a: GO:0042446 ! hormone biosynthetic process is_a: GO:0120178 ! steroid hormone biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:25354 ! mineralocorticoid -relationship: has_primary_output CHEBI:25354 ! mineralocorticoid +intersection_of: RO:0004008 CHEBI:25354 ! has primary output mineralocorticoid +relationship: RO:0004008 CHEBI:25354 ! has primary output mineralocorticoid [Term] id: GO:0006706 @@ -47641,8 +47486,8 @@ synonym: "steroid degradation" EXACT [] is_a: GO:0008202 ! steroid metabolic process is_a: GO:0016042 ! lipid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:35341 ! steroid -relationship: has_primary_input CHEBI:35341 ! steroid +intersection_of: RO:0004009 CHEBI:35341 ! has primary input steroid +relationship: RO:0004009 CHEBI:35341 ! has primary input steroid [Term] id: GO:0006709 @@ -47657,8 +47502,8 @@ is_a: GO:0042182 ! ketone catabolic process is_a: GO:0042448 ! progesterone metabolic process is_a: GO:0120256 ! olefinic compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:17026 ! progesterone -relationship: has_primary_input CHEBI:17026 ! progesterone +intersection_of: RO:0004009 CHEBI:17026 ! has primary input progesterone +relationship: RO:0004009 CHEBI:17026 ! has primary input progesterone [Term] id: GO:0006712 @@ -47672,8 +47517,8 @@ is_a: GO:0006706 ! steroid catabolic process is_a: GO:0008212 ! mineralocorticoid metabolic process is_a: GO:0042447 ! hormone catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:25354 ! mineralocorticoid -relationship: has_primary_input CHEBI:25354 ! mineralocorticoid +intersection_of: RO:0004009 CHEBI:25354 ! has primary input mineralocorticoid +relationship: RO:0004009 CHEBI:25354 ! has primary input mineralocorticoid [Term] id: GO:0006713 @@ -47686,8 +47531,8 @@ synonym: "glucocorticoid degradation" EXACT [] is_a: GO:0006706 ! steroid catabolic process is_a: GO:0008211 ! glucocorticoid metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:24261 ! glucocorticoid -relationship: has_primary_input CHEBI:24261 ! glucocorticoid +intersection_of: RO:0004009 CHEBI:24261 ! has primary input glucocorticoid +relationship: RO:0004009 CHEBI:24261 ! has primary input glucocorticoid [Term] id: GO:0006714 @@ -47697,8 +47542,8 @@ def: "The chemical reactions and pathways involving sesquiterpenoid compounds, t synonym: "sesquiterpenoid metabolism" EXACT [] is_a: GO:0006721 ! terpenoid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26658 ! sesquiterpenoid -relationship: has_primary_input_or_output CHEBI:26658 ! sesquiterpenoid +intersection_of: RO:0004007 CHEBI:26658 ! has primary input or output sesquiterpenoid +relationship: RO:0004007 CHEBI:26658 ! has primary input or output sesquiterpenoid [Term] id: GO:0006716 @@ -47709,8 +47554,8 @@ synonym: "juvenile hormone metabolism" EXACT [] is_a: GO:0006714 ! sesquiterpenoid metabolic process is_a: GO:0042445 ! hormone metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:24943 ! juvenile hormone -relationship: has_primary_input_or_output CHEBI:24943 ! juvenile hormone +intersection_of: RO:0004007 CHEBI:24943 ! has primary input or output juvenile hormone +relationship: RO:0004007 CHEBI:24943 ! has primary input or output juvenile hormone [Term] id: GO:0006718 @@ -47725,8 +47570,8 @@ is_a: GO:0006716 ! juvenile hormone metabolic process is_a: GO:0016106 ! sesquiterpenoid biosynthetic process is_a: GO:0042446 ! hormone biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:24943 ! juvenile hormone -relationship: has_primary_output CHEBI:24943 ! juvenile hormone +intersection_of: RO:0004008 CHEBI:24943 ! has primary output juvenile hormone +relationship: RO:0004008 CHEBI:24943 ! has primary output juvenile hormone [Term] id: GO:0006719 @@ -47740,8 +47585,8 @@ is_a: GO:0006716 ! juvenile hormone metabolic process is_a: GO:0016107 ! sesquiterpenoid catabolic process is_a: GO:0042447 ! hormone catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:24943 ! juvenile hormone -relationship: has_primary_input CHEBI:24943 ! juvenile hormone +intersection_of: RO:0004009 CHEBI:24943 ! has primary input juvenile hormone +relationship: RO:0004009 CHEBI:24943 ! has primary input juvenile hormone [Term] id: GO:0006720 @@ -47754,10 +47599,11 @@ synonym: "polyisoprenoid metabolic process" NARROW [] synonym: "polyisoprenoid metabolism" NARROW [] synonym: "polyterpene metabolic process" NARROW [] synonym: "polyterpene metabolism" NARROW [] -is_a: GO:0044255 ! cellular lipid metabolic process +is_a: GO:0006629 ! lipid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:24913 ! isoprenoid -relationship: has_primary_input_or_output CHEBI:24913 ! isoprenoid +intersection_of: RO:0004007 CHEBI:24913 ! has primary input or output isoprenoid +relationship: RO:0004007 CHEBI:24913 ! has primary input or output isoprenoid +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0006721 @@ -47767,8 +47613,8 @@ def: "The chemical reactions and pathways involving terpenoids, any member of a synonym: "terpenoid metabolism" EXACT [] is_a: GO:0006720 ! isoprenoid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26873 ! terpenoid -relationship: has_primary_input_or_output CHEBI:26873 ! terpenoid +intersection_of: RO:0004007 CHEBI:26873 ! has primary input or output terpenoid +relationship: RO:0004007 CHEBI:26873 ! has primary input or output terpenoid [Term] id: GO:0006723 @@ -47781,10 +47627,10 @@ synonym: "cuticle hydrocarbon formation" EXACT [] synonym: "cuticle hydrocarbon synthesis" EXACT [] is_a: GO:0120251 ! hydrocarbon biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:24632 ! hydrocarbon intersection_of: part_of GO:0042335 ! cuticle development -relationship: has_primary_output CHEBI:24632 ! hydrocarbon +intersection_of: RO:0004008 CHEBI:24632 ! has primary output hydrocarbon relationship: part_of GO:0042335 ! cuticle development +relationship: RO:0004008 CHEBI:24632 ! has primary output hydrocarbon [Term] id: GO:0006753 @@ -47796,8 +47642,8 @@ is_a: GO:0006796 ! phosphate-containing compound metabolic process is_a: GO:0019637 ! organophosphate metabolic process is_a: GO:0055086 ! nucleobase-containing small molecule metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:25608 ! nucleoside phosphate -relationship: has_primary_input_or_output CHEBI:25608 ! nucleoside phosphate +intersection_of: RO:0004007 CHEBI:25608 ! has primary input or output nucleoside phosphate +relationship: RO:0004007 CHEBI:25608 ! has primary input or output nucleoside phosphate [Term] id: GO:0006754 @@ -47814,8 +47660,8 @@ synonym: "ATP synthesis" EXACT [] is_a: GO:0009142 ! nucleoside triphosphate biosynthetic process is_a: GO:0046034 ! ATP metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:30616 ! ATP(4-) -relationship: has_primary_output CHEBI:30616 ! ATP(4-) +intersection_of: RO:0004008 CHEBI:30616 ! has primary output ATP(4-) +relationship: RO:0004008 CHEBI:30616 ! has primary output ATP(4-) [Term] id: GO:0006778 @@ -47826,8 +47672,8 @@ synonym: "porphyrin metabolic process" RELATED [] synonym: "porphyrin metabolism" RELATED [] is_a: GO:0033013 ! tetrapyrrole metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26214 ! porphyrins -relationship: has_primary_input_or_output CHEBI:26214 ! porphyrins +intersection_of: RO:0004007 CHEBI:26214 ! has primary input or output porphyrins +relationship: RO:0004007 CHEBI:26214 ! has primary input or output porphyrins [Term] id: GO:0006779 @@ -47842,8 +47688,8 @@ synonym: "porphyrin synthesis" RELATED [] is_a: GO:0006778 ! porphyrin-containing compound metabolic process is_a: GO:0033014 ! tetrapyrrole biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26214 ! porphyrins -relationship: has_primary_output CHEBI:26214 ! porphyrins +intersection_of: RO:0004008 CHEBI:26214 ! has primary output porphyrins +relationship: RO:0004008 CHEBI:26214 ! has primary output porphyrins [Term] id: GO:0006787 @@ -47857,8 +47703,8 @@ synonym: "porphyrin degradation" RELATED [] is_a: GO:0006778 ! porphyrin-containing compound metabolic process is_a: GO:0033015 ! tetrapyrrole catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:26214 ! porphyrins -relationship: has_primary_input CHEBI:26214 ! porphyrins +intersection_of: RO:0004009 CHEBI:26214 ! has primary input porphyrins +relationship: RO:0004009 CHEBI:26214 ! has primary input porphyrins [Term] id: GO:0006790 @@ -47875,10 +47721,10 @@ synonym: "sulfur metabolism" EXACT [] synonym: "sulphur metabolic process" EXACT [] synonym: "sulphur metabolism" EXACT [] xref: Wikipedia:Sulfur_metabolism -is_a: GO:0044237 ! cellular metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26835 ! sulfur molecular entity -relationship: has_primary_input_or_output CHEBI:26835 ! sulfur molecular entity +intersection_of: RO:0004007 CHEBI:26835 ! has primary input or output sulfur molecular entity +relationship: RO:0004007 CHEBI:26835 ! has primary input or output sulfur molecular entity [Term] id: GO:0006793 @@ -47887,10 +47733,10 @@ namespace: biological_process def: "The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus." [GOC:ai] subset: goslim_pir synonym: "phosphorus metabolism" EXACT [] -is_a: GO:0044237 ! cellular metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26082 ! phosphorus molecular entity -relationship: has_primary_input_or_output CHEBI:26082 ! phosphorus molecular entity +intersection_of: RO:0004007 CHEBI:26082 ! has primary input or output phosphorus molecular entity +relationship: RO:0004007 CHEBI:26082 ! has primary input or output phosphorus molecular entity [Term] id: GO:0006796 @@ -47901,8 +47747,8 @@ synonym: "phosphate metabolic process" RELATED [] synonym: "phosphate metabolism" EXACT [] is_a: GO:0006793 ! phosphorus metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26020 ! phosphate -relationship: has_primary_input_or_output CHEBI:26020 ! phosphate +intersection_of: RO:0004007 CHEBI:26020 ! has primary input or output phosphate +relationship: RO:0004007 CHEBI:26020 ! has primary input or output phosphate [Term] id: GO:0006805 @@ -47917,7 +47763,6 @@ synonym: "drug metabolism" RELATED [] synonym: "xenobiotic metabolism" EXACT [] xref: Wikipedia:Drug_metabolism xref: Wikipedia:Xenobiotic_metabolism -is_a: GO:0044237 ! cellular metabolic process relationship: part_of GO:0071466 ! cellular response to xenobiotic stimulus property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19460" xsd:anyURI @@ -47956,8 +47801,8 @@ subset: goslim_yeast synonym: "ion transport" BROAD [] is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:24867 ! monoatomic ion -relationship: has_primary_input CHEBI:24867 ! monoatomic ion +intersection_of: RO:0004009 CHEBI:24867 ! has primary input monoatomic ion +relationship: RO:0004009 CHEBI:24867 ! has primary input monoatomic ion [Term] id: GO:0006812 @@ -47972,8 +47817,30 @@ synonym: "di-, tri-valent inorganic cation transport" NARROW [GOC:mah] synonym: "trivalent inorganic cation transport" NARROW [] is_a: GO:0006811 ! monoatomic ion transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:23906 ! monoatomic cation -relationship: has_primary_input CHEBI:23906 ! monoatomic cation +intersection_of: RO:0004009 CHEBI:23906 ! has primary input monoatomic cation +relationship: RO:0004009 CHEBI:23906 ! has primary input monoatomic cation + +[Term] +id: GO:0006813 +name: potassium ion transport +namespace: biological_process +alt_id: GO:0015458 +alt_id: GO:0071804 +def: "The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] +synonym: "cellular potassium ion transport" EXACT [] +synonym: "K+ conductance" RELATED [] +synonym: "low voltage-dependent potassium channel auxiliary protein activity" RELATED [GOC:mah] +synonym: "low voltage-gated potassium channel auxiliary protein activity" RELATED [GOC:mah] +synonym: "potassium conductance" NARROW [] +synonym: "potassium ion conductance" NARROW [] +synonym: "potassium transport" RELATED [] +synonym: "sodium/potassium transport" BROAD [] +is_a: GO:0030001 ! metal ion transport +intersection_of: GO:0006810 ! transport +intersection_of: RO:0004009 CHEBI:29103 ! has primary input potassium(1+) +relationship: RO:0004009 CHEBI:29103 ! has primary input potassium(1+) +created_by: mah +creation_date: 2010-09-03T02:39:22Z [Term] id: GO:0006814 @@ -47990,8 +47857,8 @@ synonym: "sodium:calcium exchange" NARROW [] synonym: "sodium:solute transport" NARROW [] is_a: GO:0030001 ! metal ion transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29101 ! sodium(1+) -relationship: has_primary_input CHEBI:29101 ! sodium(1+) +intersection_of: RO:0004009 CHEBI:29101 ! has primary input sodium(1+) +relationship: RO:0004009 CHEBI:29101 ! has primary input sodium(1+) [Term] id: GO:0006816 @@ -48003,8 +47870,8 @@ synonym: "mitochondrial sodium/calcium ion exchange" NARROW [] synonym: "sodium:calcium exchange" NARROW [] is_a: GO:0030001 ! metal ion transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29108 ! calcium(2+) -relationship: has_primary_input CHEBI:29108 ! calcium(2+) +intersection_of: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) [Term] id: GO:0006817 @@ -48014,8 +47881,8 @@ def: "The directed movement of phosphate ions into, out of or within a cell, or synonym: "phosphate transport" RELATED [] is_a: GO:0015698 ! inorganic anion transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:43474 ! hydrogenphosphate -relationship: has_primary_input CHEBI:43474 ! hydrogenphosphate +intersection_of: RO:0004009 CHEBI:43474 ! has primary input hydrogenphosphate +relationship: RO:0004009 CHEBI:43474 ! has primary input hydrogenphosphate [Term] id: GO:0006826 @@ -48038,8 +47905,8 @@ synonym: "iron ion import" RELATED [] synonym: "iron transport" EXACT [] is_a: GO:0000041 ! transition metal ion transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:24875 ! iron cation -relationship: has_primary_input CHEBI:24875 ! iron cation +intersection_of: RO:0004009 CHEBI:24875 ! has primary input iron cation +relationship: RO:0004009 CHEBI:24875 ! has primary input iron cation created_by: pr creation_date: 2012-04-18T03:33:45Z @@ -48050,8 +47917,8 @@ namespace: biological_process def: "The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] is_a: GO:0042044 ! fluid transport intersection_of: GO:0042044 ! fluid transport -intersection_of: has_primary_input CHEBI:15377 ! water -relationship: has_primary_input CHEBI:15377 ! water +intersection_of: RO:0004009 CHEBI:15377 ! has primary input water +relationship: RO:0004009 CHEBI:15377 ! has primary input water [Term] id: GO:0006835 @@ -48062,8 +47929,8 @@ def: "The directed movement of dicarboxylic acids into, out of or within a cell, synonym: "sodium:dicarboxylate transport" RELATED [] is_a: GO:0046942 ! carboxylic acid transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:35693 ! dicarboxylic acid anion -relationship: has_primary_input CHEBI:35693 ! dicarboxylic acid anion +intersection_of: RO:0004009 CHEBI:35693 ! has primary input dicarboxylic acid anion +relationship: RO:0004009 CHEBI:35693 ! has primary input dicarboxylic acid anion [Term] id: GO:0006836 @@ -48074,7 +47941,7 @@ subset: goslim_pir synonym: "sodium:neurotransmitter transport" NARROW [] is_a: GO:0006810 ! transport relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa [Term] id: GO:0006837 @@ -48083,8 +47950,8 @@ namespace: biological_process def: "The directed movement of serotonin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Serotonin (5-hydroxytryptamine) is a monoamine neurotransmitter occurring in the peripheral and central nervous systems." [GOC:ai] is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:350546 ! serotonin(1+) -relationship: has_primary_input CHEBI:350546 ! serotonin(1+) +intersection_of: RO:0004009 CHEBI:350546 ! has primary input serotonin(1+) +relationship: RO:0004009 CHEBI:350546 ! has primary input serotonin(1+) [Term] id: GO:0006846 @@ -48093,8 +47960,8 @@ namespace: biological_process def: "The directed movement of acetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:krc] is_a: GO:0015718 ! monocarboxylic acid transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:30089 ! acetate -relationship: has_primary_input CHEBI:30089 ! acetate +intersection_of: RO:0004009 CHEBI:30089 ! has primary input acetate +relationship: RO:0004009 CHEBI:30089 ! has primary input acetate [Term] id: GO:0006847 @@ -48103,10 +47970,10 @@ namespace: biological_process def: "The directed movement of acetate across a plasma membrane." [GOC:ai] is_a: GO:0035433 ! acetate transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:30089 ! acetate -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:30089 ! acetate -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:30089 ! has primary input acetate +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:30089 ! has primary input acetate [Term] id: GO:0006858 @@ -48115,8 +47982,8 @@ namespace: biological_process def: "The transport of substances that occurs outside cells." [GOC:go_curators] is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: occurs_in GO:0005576 ! extracellular region -relationship: occurs_in GO:0005576 ! extracellular region +intersection_of: BFO:0000066 GO:0005576 ! occurs in extracellular region +relationship: BFO:0000066 GO:0005576 ! occurs in extracellular region [Term] id: GO:0006860 @@ -48126,8 +47993,8 @@ def: "The directed extracellular movement of amino acids." [GOC:ai] is_a: GO:0006858 ! extracellular transport is_a: GO:0006865 ! amino acid transport intersection_of: GO:0006865 ! amino acid transport -intersection_of: occurs_in GO:0005576 ! extracellular region -relationship: occurs_in GO:0005576 ! extracellular region +intersection_of: BFO:0000066 GO:0005576 ! occurs in extracellular region +relationship: BFO:0000066 GO:0005576 ! occurs in extracellular region [Term] id: GO:0006862 @@ -48137,8 +48004,8 @@ def: "The directed movement of a nucleotide, any compound consisting of a nucleo is_a: GO:0015748 ! organophosphate ester transport is_a: GO:0015931 ! nucleobase-containing compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:36976 ! nucleotide -relationship: has_primary_input CHEBI:36976 ! nucleotide +intersection_of: RO:0004009 CHEBI:36976 ! has primary input nucleotide +relationship: RO:0004009 CHEBI:36976 ! has primary input nucleotide [Term] id: GO:0006863 @@ -48152,8 +48019,8 @@ synonym: "purine transmembrane transport" RELATED [GOC:mah] synonym: "purine transport" RELATED [] is_a: GO:0015851 ! nucleobase transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:26386 ! purine nucleobase -relationship: has_primary_input CHEBI:26386 ! purine nucleobase +intersection_of: RO:0004009 CHEBI:26386 ! has primary input purine nucleobase +relationship: RO:0004009 CHEBI:26386 ! has primary input purine nucleobase [Term] id: GO:0006865 @@ -48165,8 +48032,8 @@ subset: goslim_pir subset: goslim_yeast is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion -relationship: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion +relationship: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion [Term] id: GO:0006869 @@ -48178,9 +48045,9 @@ subset: goslim_pir subset: goslim_yeast is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:18059 ! lipid -relationship: has_primary_input CHEBI:18059 ! lipid +intersection_of: RO:0004009 CHEBI:18059 ! has primary input lipid relationship: part_of GO:0010876 ! lipid localization +relationship: RO:0004009 CHEBI:18059 ! has primary input lipid [Term] id: GO:0006873 @@ -48193,8 +48060,8 @@ synonym: "cellular monoatomic ion homeostasis" EXACT [] is_a: GO:0050801 ! monoatomic ion homeostasis is_a: GO:0055082 ! intracellular chemical homeostasis intersection_of: GO:0019725 ! cellular homeostasis -intersection_of: regulates_levels_of CHEBI:24867 ! monoatomic ion -relationship: regulates_levels_of CHEBI:24867 ! monoatomic ion +intersection_of: RO:0002332 CHEBI:24867 ! regulates levels of monoatomic ion +relationship: RO:0002332 CHEBI:24867 ! regulates levels of monoatomic ion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24455" xsd:anyURI [Term] @@ -48207,8 +48074,8 @@ synonym: "regulation of calcium ion concentration" BROAD [] is_a: GO:0030003 ! intracellular monoatomic cation homeostasis is_a: GO:0055074 ! calcium ion homeostasis intersection_of: GO:0019725 ! cellular homeostasis -intersection_of: regulates_levels_of CHEBI:29108 ! calcium(2+) -relationship: regulates_levels_of CHEBI:29108 ! calcium(2+) +intersection_of: RO:0002332 CHEBI:29108 ! regulates levels of calcium(2+) +relationship: RO:0002332 CHEBI:29108 ! regulates levels of calcium(2+) [Term] id: GO:0006879 @@ -48220,8 +48087,8 @@ synonym: "iron homeostasis" BROAD [] is_a: GO:0030003 ! intracellular monoatomic cation homeostasis is_a: GO:0098771 ! inorganic ion homeostasis intersection_of: GO:0055082 ! intracellular chemical homeostasis -intersection_of: regulates_levels_of CHEBI:24875 ! iron cation -relationship: regulates_levels_of CHEBI:24875 ! iron cation +intersection_of: RO:0002332 CHEBI:24875 ! regulates levels of iron cation +relationship: RO:0002332 CHEBI:24875 ! regulates levels of iron cation [Term] id: GO:0006883 @@ -48232,8 +48099,8 @@ synonym: "cellular sodium ion homeostasis" EXACT [] is_a: GO:0030003 ! intracellular monoatomic cation homeostasis is_a: GO:0055078 ! sodium ion homeostasis intersection_of: GO:0055082 ! intracellular chemical homeostasis -intersection_of: regulates_levels_of CHEBI:29101 ! sodium(1+) -relationship: regulates_levels_of CHEBI:29101 ! sodium(1+) +intersection_of: RO:0002332 CHEBI:29101 ! regulates levels of sodium(1+) +relationship: RO:0002332 CHEBI:29101 ! regulates levels of sodium(1+) [Term] id: GO:0006884 @@ -48252,8 +48119,8 @@ synonym: "hydrogen ion homeostasis" EXACT [GOC:dph, GOC:tb] is_a: GO:0055080 ! monoatomic cation homeostasis is_a: GO:0065007 ! biological regulation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates_characteristic PATO:0001842 ! acidity -relationship: regulates_characteristic PATO:0001842 ! acidity +intersection_of: RO:0019000 PATO:0001842 ! regulates characteristic acidity +relationship: RO:0019000 PATO:0001842 ! regulates characteristic acidity [Term] id: GO:0006886 @@ -48267,11 +48134,11 @@ synonym: "copper-induced intracellular protein transport" RELATED [GOC:al] is_a: GO:0015031 ! protein transport is_a: GO:0046907 ! intracellular transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input PR:000000001 ! protein -intersection_of: occurs_in GO:0005622 ! intracellular anatomical structure -relationship: has_primary_input PR:000000001 ! protein -relationship: occurs_in GO:0005622 ! intracellular anatomical structure +intersection_of: BFO:0000066 GO:0005622 ! occurs in intracellular anatomical structure +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: BFO:0000066 GO:0005622 ! occurs in intracellular anatomical structure relationship: part_of GO:0008104 ! protein localization +relationship: RO:0004009 PR:000000001 ! has primary input protein [Term] id: GO:0006887 @@ -48287,9 +48154,9 @@ xref: Wikipedia:Exocytosis is_a: GO:0016192 ! vesicle-mediated transport is_a: GO:0032940 ! secretion by cell intersection_of: GO:0006810 ! transport -intersection_of: process_has_causal_agent GO:0070382 ! exocytic vesicle +intersection_of: RO:0002608 GO:0070382 ! process has causal agent exocytic vesicle relationship: has_part GO:0099500 ! vesicle fusion to plasma membrane -relationship: process_has_causal_agent GO:0070382 ! exocytic vesicle +relationship: RO:0002608 GO:0070382 ! process has causal agent exocytic vesicle [Term] id: GO:0006892 @@ -48308,10 +48175,10 @@ synonym: "Golgi to plasma membrane vesicle-mediated transport" EXACT [] is_a: GO:0006892 ! post-Golgi vesicle-mediated transport is_a: GO:0098876 ! vesicle-mediated transport to the plasma membrane intersection_of: GO:0016192 ! vesicle-mediated transport -intersection_of: has_target_end_location GO:0005886 ! plasma membrane -intersection_of: has_target_start_location GO:0005794 ! Golgi apparatus -relationship: has_target_end_location GO:0005886 ! plasma membrane -relationship: has_target_start_location GO:0005794 ! Golgi apparatus +intersection_of: RO:0002338 GO:0005794 ! has target start location Golgi apparatus +intersection_of: RO:0002339 GO:0005886 ! has target end location plasma membrane +relationship: RO:0002338 GO:0005794 ! has target start location Golgi apparatus +relationship: RO:0002339 GO:0005886 ! has target end location plasma membrane [Term] id: GO:0006896 @@ -48322,12 +48189,12 @@ synonym: "Golgi to vacuole vesicle-mediated transport" EXACT [] is_a: GO:0006892 ! post-Golgi vesicle-mediated transport is_a: GO:0007034 ! vacuolar transport intersection_of: GO:0016192 ! vesicle-mediated transport -intersection_of: has_target_end_location GO:0005773 ! vacuole -intersection_of: has_target_start_location GO:0005794 ! Golgi apparatus -intersection_of: occurs_in GO:0005622 ! intracellular anatomical structure -relationship: has_target_end_location GO:0005773 ! vacuole -relationship: has_target_start_location GO:0005794 ! Golgi apparatus -relationship: occurs_in GO:0005622 ! intracellular anatomical structure +intersection_of: BFO:0000066 GO:0005622 ! occurs in intracellular anatomical structure +intersection_of: RO:0002338 GO:0005794 ! has target start location Golgi apparatus +intersection_of: RO:0002339 GO:0005773 ! has target end location vacuole +relationship: BFO:0000066 GO:0005622 ! occurs in intracellular anatomical structure +relationship: RO:0002338 GO:0005794 ! has target start location Golgi apparatus +relationship: RO:0002339 GO:0005773 ! has target end location vacuole [Term] id: GO:0006897 @@ -48347,8 +48214,8 @@ is_a: GO:0016192 ! vesicle-mediated transport is_a: GO:0098657 ! import into cell relationship: has_part GO:0006900 ! vesicle budding from membrane relationship: has_part GO:0010324 ! membrane invagination -relationship: has_target_end_location GO:0031410 ! cytoplasmic vesicle -relationship: has_target_start_location GO:0005576 ! extracellular region +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0031410 ! has target end location cytoplasmic vesicle property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24907" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/25268" xsd:anyURI @@ -48389,9 +48256,9 @@ def: "Fusion of the membrane of a transport vesicle with its target membrane." [ is_a: GO:0016050 ! vesicle organization is_a: GO:0090174 ! organelle membrane fusion intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_fusion_of GO:0012506 ! vesicle membrane +intersection_of: RO:0012008 GO:0012506 ! results in fusion of vesicle membrane relationship: part_of GO:0016192 ! vesicle-mediated transport -relationship: results_in_fusion_of GO:0012506 ! vesicle membrane +relationship: RO:0012008 GO:0012506 ! results in fusion of vesicle membrane [Term] id: GO:0006909 @@ -48417,12 +48284,12 @@ subset: goslim_pombe synonym: "nucleocytoplasmic shuttling" NARROW [] is_a: GO:0051169 ! nuclear transport intersection_of: GO:0006810 ! transport -intersection_of: results_in_transport_across GO:0005635 ! nuclear envelope -intersection_of: results_in_transport_to_from_or_in GO:0005829 ! cytosol -intersection_of: results_in_transport_to_from_or_in GO:0031981 ! nuclear lumen -relationship: results_in_transport_across GO:0005635 ! nuclear envelope -relationship: results_in_transport_to_from_or_in GO:0005829 ! cytosol -relationship: results_in_transport_to_from_or_in GO:0031981 ! nuclear lumen +intersection_of: RO:0002342 GO:0005635 ! results in transport across nuclear envelope +intersection_of: RO:0002344 GO:0005829 ! results in transport to from or in cytosol +intersection_of: RO:0002344 GO:0031981 ! results in transport to from or in nuclear lumen +relationship: RO:0002342 GO:0005635 ! results in transport across nuclear envelope +relationship: RO:0002344 GO:0005829 ! results in transport to from or in cytosol +relationship: RO:0002344 GO:0031981 ! results in transport to from or in nuclear lumen [Term] id: GO:0006915 @@ -48453,7 +48320,7 @@ relationship: ends_with GO:0097194 ! execution phase of apoptosis relationship: in_taxon NCBITaxon:33154 {all_only="true"} ! Opisthokonta relationship: never_in_taxon NCBITaxon:2 ! Bacteria relationship: never_in_taxon NCBITaxon:4896 ! Schizosaccharomyces pombe -relationship: only_in_taxon NCBITaxon:33154 ! Opisthokonta +relationship: RO:0002160 NCBITaxon:33154 ! only in taxon Opisthokonta relationship: starts_with GO:0097190 ! apoptotic signaling pathway [Term] @@ -48500,7 +48367,7 @@ def: "A process in which force is generated within muscle tissue, resulting in a subset: goslim_pir xref: Wikipedia:Muscle_contraction is_a: GO:0003012 ! muscle system process -relationship: occurs_in UBERON:0002385 ! muscle tissue +relationship: BFO:0000066 UBERON:0002385 ! occurs in muscle tissue [Term] id: GO:0006937 @@ -48509,8 +48376,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of muscle contraction." [GOC:go_curators] is_a: GO:0090257 ! regulation of muscle system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006936 ! muscle contraction -relationship: regulates GO:0006936 ! muscle contraction +intersection_of: RO:0002211 GO:0006936 ! regulates (processual) muscle contraction +relationship: RO:0002211 GO:0006936 ! regulates (processual) muscle contraction [Term] id: GO:0006939 @@ -48520,8 +48387,8 @@ def: "A process in which force is generated within smooth muscle tissue, resulti synonym: "visceral muscle contraction" EXACT [] is_a: GO:0006936 ! muscle contraction intersection_of: GO:0006936 ! muscle contraction -intersection_of: occurs_in UBERON:0001135 ! smooth muscle tissue -relationship: occurs_in UBERON:0001135 ! smooth muscle tissue +intersection_of: BFO:0000066 UBERON:0001135 ! occurs in smooth muscle tissue +relationship: BFO:0000066 UBERON:0001135 ! occurs in smooth muscle tissue [Term] id: GO:0006940 @@ -48530,8 +48397,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of smooth muscle contraction." [GOC:go_curators] is_a: GO:0006937 ! regulation of muscle contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006939 ! smooth muscle contraction -relationship: regulates GO:0006939 ! smooth muscle contraction +intersection_of: RO:0002211 GO:0006939 ! regulates (processual) smooth muscle contraction +relationship: RO:0002211 GO:0006939 ! regulates (processual) smooth muscle contraction [Term] id: GO:0006941 @@ -48540,7 +48407,7 @@ namespace: biological_process def: "A process in which force is generated within striated muscle tissue, resulting in the shortening of the muscle. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope." [GOC:jl, GOC:mtg_muscle, ISBN:0198506732] synonym: "sarcomeric muscle contraction" EXACT [] is_a: GO:0006936 ! muscle contraction -relationship: occurs_in UBERON:0002036 ! striated muscle tissue +relationship: BFO:0000066 UBERON:0002036 ! occurs in striated muscle tissue [Term] id: GO:0006942 @@ -48549,8 +48416,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of striated muscle contraction." [GOC:go_curators] is_a: GO:0006937 ! regulation of muscle contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006941 ! striated muscle contraction -relationship: regulates GO:0006941 ! striated muscle contraction +intersection_of: RO:0002211 GO:0006941 ! regulates (processual) striated muscle contraction +relationship: RO:0002211 GO:0006941 ! regulates (processual) striated muscle contraction [Term] id: GO:0006949 @@ -48561,15 +48428,14 @@ subset: goslim_pir is_a: GO:0009987 ! cellular process is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity CL:0000228 ! multinucleate cell -relationship: results_in_formation_of_anatomical_entity CL:0000228 ! multinucleate cell +intersection_of: RO:0002297 CL:0000228 ! results in formation of anatomical entity multinucleate cell +relationship: RO:0002297 CL:0000228 ! results in formation of anatomical entity multinucleate cell [Term] id: GO:0006950 name: response to stress namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation)." [GOC:mah] -comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. subset: goslim_candida subset: goslim_chembl subset: goslim_drosophila @@ -48579,6 +48445,7 @@ subset: goslim_plant_ribbon synonym: "response to abiotic stress" RELATED [] synonym: "response to biotic stress" RELATED [] is_a: GO:0050896 ! response to stimulus +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26810" xsd:anyURI [Term] id: GO:0006952 @@ -48603,7 +48470,7 @@ synonym: "inflammation" BROAD [] xref: Wikipedia:Inflammation is_a: GO:0006952 ! defense response relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata [Term] id: GO:0006955 @@ -48638,8 +48505,8 @@ synonym: "single organism organelle organization" EXACT [GOC:TermGenie] synonym: "single-organism organelle organization" RELATED [] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0043226 ! organelle -relationship: results_in_organization_of GO:0043226 ! organelle +intersection_of: RO:0002592 GO:0043226 ! results in organization of organelle +relationship: RO:0002592 GO:0043226 ! results in organization of organelle property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI created_by: jl creation_date: 2013-12-19T15:25:51Z @@ -48661,8 +48528,8 @@ synonym: "nuclear organization and biogenesis" RELATED [GOC:mah] synonym: "nucleus organization and biogenesis" RELATED [GOC:mah] is_a: GO:0006996 ! organelle organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005634 ! nucleus -relationship: results_in_organization_of GO:0005634 ! nucleus +intersection_of: RO:0002592 GO:0005634 ! results in organization of nucleus +relationship: RO:0002592 GO:0005634 ! results in organization of nucleus [Term] id: GO:0006998 @@ -48673,10 +48540,10 @@ synonym: "nuclear envelope organisation" EXACT [GOC:mah] synonym: "nuclear envelope organization and biogenesis" RELATED [GOC:mah] is_a: GO:0061024 ! membrane organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005635 ! nuclear envelope +intersection_of: RO:0002592 GO:0005635 ! results in organization of nuclear envelope relationship: part_of GO:0006997 ! nucleus organization relationship: part_of GO:0010256 ! endomembrane system organization -relationship: results_in_organization_of GO:0005635 ! nuclear envelope +relationship: RO:0002592 GO:0005635 ! results in organization of nuclear envelope [Term] id: GO:0007000 @@ -48687,8 +48554,8 @@ synonym: "nucleolus organisation" EXACT [] synonym: "nucleolus organization and biogenesis" RELATED [GOC:mah] is_a: GO:0006997 ! nucleus organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005730 ! nucleolus -relationship: results_in_organization_of GO:0005730 ! nucleolus +intersection_of: RO:0002592 GO:0005730 ! results in organization of nucleolus +relationship: RO:0002592 GO:0005730 ! results in organization of nucleolus [Term] id: GO:0007009 @@ -48700,9 +48567,9 @@ synonym: "plasma membrane organisation" EXACT [] synonym: "plasma membrane organization and biogenesis" RELATED [GOC:mah] is_a: GO:0061024 ! membrane organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005886 ! plasma membrane +intersection_of: RO:0002592 GO:0005886 ! results in organization of plasma membrane relationship: part_of GO:0010256 ! endomembrane system organization -relationship: results_in_organization_of GO:0005886 ! plasma membrane +relationship: RO:0002592 GO:0005886 ! results in organization of plasma membrane [Term] id: GO:0007010 @@ -48721,8 +48588,8 @@ synonym: "cytoskeleton organisation" EXACT [] synonym: "cytoskeleton organization and biogenesis" RELATED [GOC:mah] is_a: GO:0006996 ! organelle organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005856 ! cytoskeleton -relationship: results_in_organization_of GO:0005856 ! cytoskeleton +intersection_of: RO:0002592 GO:0005856 ! results in organization of cytoskeleton +relationship: RO:0002592 GO:0005856 ! results in organization of cytoskeleton [Term] id: GO:0007015 @@ -48733,9 +48600,9 @@ synonym: "actin filament organisation" EXACT [] synonym: "regulation of actin filament localization" NARROW [] is_a: GO:0097435 ! supramolecular fiber organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005884 ! actin filament +intersection_of: RO:0002592 GO:0005884 ! results in organization of actin filament relationship: part_of GO:0030036 ! actin cytoskeleton organization -relationship: results_in_organization_of GO:0005884 ! actin filament +relationship: RO:0002592 GO:0005884 ! results in organization of actin filament [Term] id: GO:0007017 @@ -48745,8 +48612,8 @@ def: "Any cellular process that depends upon or alters the microtubule cytoskele subset: goslim_chembl is_a: GO:0009987 ! cellular process intersection_of: GO:0009987 ! cellular process -intersection_of: process_has_causal_agent GO:0005874 ! microtubule -relationship: process_has_causal_agent GO:0005874 ! microtubule +intersection_of: RO:0002608 GO:0005874 ! process has causal agent microtubule +relationship: RO:0002608 GO:0005874 ! process has causal agent microtubule property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19809" xsd:anyURI [Term] @@ -48771,8 +48638,8 @@ is_a: GO:0031109 ! microtubule polymerization or depolymerization is_a: GO:0051261 ! protein depolymerization is_a: GO:0097435 ! supramolecular fiber organization intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0005874 ! microtubule -relationship: results_in_disassembly_of GO:0005874 ! microtubule +intersection_of: RO:0002590 GO:0005874 ! results in disassembly of microtubule +relationship: RO:0002590 GO:0005874 ! results in disassembly of microtubule [Term] id: GO:0007020 @@ -48801,8 +48668,8 @@ is_a: GO:0031114 ! regulation of microtubule depolymerization is_a: GO:1901880 ! negative regulation of protein depolymerization is_a: GO:1902904 ! negative regulation of supramolecular fiber organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007019 ! microtubule depolymerization -relationship: negatively_regulates GO:0007019 ! microtubule depolymerization +intersection_of: RO:0002212 GO:0007019 ! negatively regulates microtubule depolymerization +relationship: RO:0002212 GO:0007019 ! negatively regulates microtubule depolymerization [Term] id: GO:0007027 @@ -48816,8 +48683,8 @@ is_a: GO:0010937 ! regulation of cytoplasmic microtubule depolymerization is_a: GO:0031345 ! negative regulation of cell projection organization is_a: GO:0120035 ! regulation of plasma membrane bounded cell projection organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060404 ! axonemal microtubule depolymerization -relationship: negatively_regulates GO:0060404 ! axonemal microtubule depolymerization +intersection_of: RO:0002212 GO:0060404 ! negatively regulates axonemal microtubule depolymerization +relationship: RO:0002212 GO:0060404 ! negatively regulates axonemal microtubule depolymerization [Term] id: GO:0007028 @@ -48829,8 +48696,8 @@ synonym: "cytoplasm organisation" EXACT [] synonym: "cytoplasm organization and biogenesis" RELATED [GOC:mah] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005737 ! cytoplasm -relationship: results_in_organization_of GO:0005737 ! cytoplasm +intersection_of: RO:0002592 GO:0005737 ! results in organization of cytoplasm +relationship: RO:0002592 GO:0005737 ! results in organization of cytoplasm [Term] id: GO:0007030 @@ -48843,9 +48710,9 @@ synonym: "Golgi organisation" EXACT [] synonym: "Golgi organization and biogenesis" RELATED [GOC:mah] is_a: GO:0006996 ! organelle organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005794 ! Golgi apparatus +intersection_of: RO:0002592 GO:0005794 ! results in organization of Golgi apparatus relationship: part_of GO:0010256 ! endomembrane system organization -relationship: results_in_organization_of GO:0005794 ! Golgi apparatus +relationship: RO:0002592 GO:0005794 ! results in organization of Golgi apparatus [Term] id: GO:0007033 @@ -48862,8 +48729,8 @@ synonym: "vacuole organisation" EXACT [] synonym: "vacuole organization and biogenesis" RELATED [GOC:mah] is_a: GO:0006996 ! organelle organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005773 ! vacuole -relationship: results_in_organization_of GO:0005773 ! vacuole +intersection_of: RO:0002592 GO:0005773 ! results in organization of vacuole +relationship: RO:0002592 GO:0005773 ! results in organization of vacuole [Term] id: GO:0007034 @@ -48873,8 +48740,8 @@ def: "The directed movement of substances into, out of or within a vacuole." [GO subset: goslim_chembl is_a: GO:0046907 ! intracellular transport intersection_of: GO:0046907 ! intracellular transport -intersection_of: results_in_transport_to_from_or_in GO:0005773 ! vacuole -relationship: results_in_transport_to_from_or_in GO:0005773 ! vacuole +intersection_of: RO:0002344 GO:0005773 ! results in transport to from or in vacuole +relationship: RO:0002344 GO:0005773 ! results in transport to from or in vacuole [Term] id: GO:0007036 @@ -48883,8 +48750,8 @@ namespace: biological_process def: "Any process involved in the maintenance of an internal steady state of calcium ions in the vacuole or between a vacuole and its surroundings." [GOC:ai, GOC:mah] is_a: GO:0006874 ! intracellular calcium ion homeostasis intersection_of: GO:0055074 ! calcium ion homeostasis -intersection_of: occurs_in GO:0005773 ! vacuole -relationship: occurs_in GO:0005773 ! vacuole +intersection_of: BFO:0000066 GO:0005773 ! occurs in vacuole +relationship: BFO:0000066 GO:0005773 ! occurs in vacuole [Term] id: GO:0007039 @@ -48897,8 +48764,8 @@ synonym: "vacuolar protein catabolism" RELATED [] synonym: "vacuolar protein degradation" RELATED [] is_a: GO:0030163 ! protein catabolic process intersection_of: GO:0030163 ! protein catabolic process -intersection_of: occurs_in GO:0005773 ! vacuole -relationship: occurs_in GO:0005773 ! vacuole +intersection_of: BFO:0000066 GO:0005773 ! occurs in vacuole +relationship: BFO:0000066 GO:0005773 ! occurs in vacuole [Term] id: GO:0007040 @@ -48910,9 +48777,9 @@ synonym: "lysosome organisation" EXACT [] synonym: "lysosome organization and biogenesis" RELATED [GOC:mah] is_a: GO:0080171 ! lytic vacuole organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005764 ! lysosome +intersection_of: RO:0002592 GO:0005764 ! results in organization of lysosome relationship: never_in_taxon NCBITaxon:4751 ! Fungi -relationship: results_in_organization_of GO:0005764 ! lysosome +relationship: RO:0002592 GO:0005764 ! results in organization of lysosome [Term] id: GO:0007041 @@ -48921,9 +48788,9 @@ namespace: biological_process def: "The directed movement of substances into, out of or within a lysosome." [GOC:ai] is_a: GO:0007034 ! vacuolar transport intersection_of: GO:0006810 ! transport -intersection_of: results_in_transport_to_from_or_in GO:0005764 ! lysosome +intersection_of: RO:0002344 GO:0005764 ! results in transport to from or in lysosome relationship: never_in_taxon NCBITaxon:4751 ! Fungi -relationship: results_in_transport_to_from_or_in GO:0005764 ! lysosome +relationship: RO:0002344 GO:0005764 ! results in transport to from or in lysosome [Term] id: GO:0007043 @@ -48934,8 +48801,8 @@ synonym: "intercellular junction assembly" EXACT [] is_a: GO:0034329 ! cell junction assembly is_a: GO:0045216 ! cell-cell junction organization intersection_of: GO:0034329 ! cell junction assembly -intersection_of: results_in_assembly_of GO:0005911 ! cell-cell junction -relationship: results_in_assembly_of GO:0005911 ! cell-cell junction +intersection_of: RO:0002588 GO:0005911 ! results in assembly of cell-cell junction +relationship: RO:0002588 GO:0005911 ! results in assembly of cell-cell junction [Term] id: GO:0007049 @@ -49010,9 +48877,9 @@ is_a: GO:0007346 ! regulation of mitotic cell cycle is_a: GO:0010564 ! regulation of cell cycle process is_a: GO:0051783 ! regulation of nuclear division intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0140014 ! mitotic nuclear division -relationship: regulates GO:0000278 ! mitotic cell cycle -relationship: regulates GO:0140014 ! mitotic nuclear division +intersection_of: RO:0002211 GO:0140014 ! regulates (processual) mitotic nuclear division +relationship: RO:0002211 GO:0000278 ! regulates (processual) mitotic cell cycle +relationship: RO:0002211 GO:0140014 ! regulates (processual) mitotic nuclear division [Term] id: GO:0007097 @@ -49034,8 +48901,8 @@ is_a: GO:0046907 ! intracellular transport is_a: GO:0051647 ! nucleus localization is_a: GO:0051656 ! establishment of organelle localization intersection_of: GO:0046907 ! intracellular transport -intersection_of: has_primary_input GO:0005634 ! nucleus -relationship: has_primary_input GO:0005634 ! nucleus +intersection_of: RO:0004009 GO:0005634 ! has primary input nucleus +relationship: RO:0004009 GO:0005634 ! has primary input nucleus [Term] id: GO:0007113 @@ -49157,12 +49024,12 @@ synonym: "leukocyte adhesion" EXACT [] synonym: "leukocyte cell adhesion" EXACT [] is_a: GO:0098609 ! cell-cell adhesion intersection_of: GO:0098609 ! cell-cell adhesion -intersection_of: has_participant CL:0000738 ! leukocyte -relationship: has_participant CL:0000738 ! leukocyte +intersection_of: RO:0000057 CL:0000738 ! has participant leukocyte relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata +relationship: RO:0000057 CL:0000738 ! has participant leukocyte +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata [Term] id: GO:0007162 @@ -49177,8 +49044,8 @@ synonym: "inhibition of cell adhesion" NARROW [] is_a: GO:0030155 ! regulation of cell adhesion is_a: GO:0048523 ! negative regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007155 ! cell adhesion -relationship: negatively_regulates GO:0007155 ! cell adhesion +intersection_of: RO:0002212 GO:0007155 ! negatively regulates cell adhesion +relationship: RO:0002212 GO:0007155 ! negatively regulates cell adhesion [Term] id: GO:0007163 @@ -49364,9 +49231,9 @@ synonym: "signal transmission across a synapse" BROAD [] synonym: "synaptic transmission" BROAD [] xref: Wikipedia:Neurotransmission is_a: GO:0098916 ! anterograde trans-synaptic signaling -relationship: has_end_location GO:0098794 ! postsynapse -relationship: has_participant GO:0045202 ! synapse -relationship: has_start_location GO:0098793 ! presynapse +relationship: RO:0000057 GO:0045202 ! has participant synapse +relationship: RO:0002231 GO:0098793 ! has start location presynapse +relationship: RO:0002232 GO:0098794 ! has end location postsynapse [Term] id: GO:0007269 @@ -49381,7 +49248,7 @@ synonym: "neurotransmitter secretory pathway" EXACT [] is_a: GO:0006836 ! neurotransmitter transport is_a: GO:0051649 ! establishment of localization in cell is_a: GO:0099643 ! signal release from synapse -relationship: occurs_in GO:0098793 ! presynapse +relationship: BFO:0000066 GO:0098793 ! occurs in presynapse [Term] id: GO:0007271 @@ -49390,7 +49257,7 @@ namespace: biological_process def: "The vesicular release of acetylcholine from a presynapse, across a chemical synapse, the subsequent activation of dopamine receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse." [GOC:dos, Wikipedia:Cholinergic] synonym: "cholinergic synaptic transmission" EXACT [] is_a: GO:0007268 ! chemical synaptic transmission -relationship: has_participant CHEBI:15355 ! acetylcholine +relationship: RO:0000057 CHEBI:15355 ! has participant acetylcholine [Term] id: GO:0007272 @@ -49399,9 +49266,9 @@ namespace: biological_process def: "The process in which glial cells envelop neuronal cell bodies and/or axons to form an insulating layer. This can take the form of myelinating or non-myelinating ensheathment." [GOC:dgh, GOC:dph, GOC:tb] synonym: "ionic insulation of neurons by glial cells" RELATED [] is_a: GO:0009987 ! cellular process -relationship: has_participant CL:0000125 ! glial cell -relationship: has_participant CL:0000540 ! neuron relationship: part_of GO:0007399 ! nervous system development +relationship: RO:0000057 CL:0000125 ! has participant glial cell +relationship: RO:0000057 CL:0000540 ! has participant neuron [Term] id: GO:0007274 @@ -49422,8 +49289,8 @@ subset: goslim_plant is_a: GO:0032501 ! multicellular organismal process is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_developmental_progression_of UBERON:0000468 ! multicellular organism -relationship: results_in_developmental_progression_of UBERON:0000468 ! multicellular organism +intersection_of: RO:0002295 UBERON:0000468 ! results in developmental progression of multicellular organism +relationship: RO:0002295 UBERON:0000468 ! results in developmental progression of multicellular organism property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/21234" xsd:anyURI [Term] @@ -49434,7 +49301,9 @@ alt_id: GO:0009552 def: "The generation and maintenance of gametes in a multicellular organism. A gamete is a haploid reproductive cell." [GOC:ems, GOC:mtg_sensu] synonym: "gametogenesis" RELATED [] is_a: GO:0048609 ! multicellular organismal reproductive process -relationship: never_in_taxon NCBITaxon_Union:0000023 +relationship: never_in_taxon NCBITaxon:2 ! Bacteria +relationship: never_in_taxon NCBITaxon:2157 ! Archaea +relationship: never_in_taxon NCBITaxon:4751 ! Fungi relationship: part_of GO:0019953 ! sexual reproduction [Term] @@ -49449,9 +49318,9 @@ is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0022412 ! cellular process involved in reproduction in multicellular organism is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000586 ! germ cell +intersection_of: RO:0002296 CL:0000586 ! results in development of germ cell relationship: part_of GO:0007276 ! gamete generation -relationship: results_in_development_of CL:0000586 ! germ cell +relationship: RO:0002296 CL:0000586 ! results in development of germ cell [Term] id: GO:0007283 @@ -49472,9 +49341,9 @@ comment: See also the Cell Ontology terms 'spermatogonium ; CL:0000020' and 'pri synonym: "spermatogonium division" EXACT [] is_a: GO:0051301 ! cell division intersection_of: GO:0051301 ! cell division -intersection_of: has_primary_input CL:0000020 ! spermatogonium -relationship: has_primary_input CL:0000020 ! spermatogonium +intersection_of: RO:0004009 CL:0000020 ! has primary input spermatogonium relationship: part_of GO:0007283 ! spermatogenesis +relationship: RO:0004009 CL:0000020 ! has primary input spermatogonium [Term] id: GO:0007285 @@ -49484,9 +49353,9 @@ def: "The phase of growth and gene expression that male germ cells undergo as th is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0048588 ! developmental cell growth intersection_of: GO:0040007 ! growth -intersection_of: results_in_growth_of CL:0000656 ! primary spermatocyte +intersection_of: RO:0002343 CL:0000656 ! results in growth of primary spermatocyte relationship: part_of GO:0007283 ! spermatogenesis -relationship: results_in_growth_of CL:0000656 ! primary spermatocyte +relationship: RO:0002343 CL:0000656 ! results in growth of primary spermatocyte [Term] id: GO:0007286 @@ -49498,9 +49367,9 @@ synonym: "spermiogenesis" EXACT [] xref: Wikipedia:Spermiogenesis is_a: GO:0007281 ! germ cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000018 ! spermatid +intersection_of: RO:0002296 CL:0000018 ! results in development of spermatid relationship: part_of GO:0048515 ! spermatid differentiation -relationship: results_in_development_of CL:0000018 ! spermatid +relationship: RO:0002296 CL:0000018 ! results in development of spermatid [Term] id: GO:0007288 @@ -49510,8 +49379,8 @@ def: "The assembly and organization of the sperm flagellar axoneme, the bundle o is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0035082 ! axoneme assembly intersection_of: GO:0035082 ! axoneme assembly -intersection_of: occurs_in CL:0000019 ! sperm -relationship: occurs_in CL:0000019 ! sperm +intersection_of: BFO:0000066 CL:0000019 ! occurs in sperm +relationship: BFO:0000066 CL:0000019 ! occurs in sperm relationship: part_of GO:0120316 ! sperm flagellum assembly [Term] @@ -49539,8 +49408,8 @@ def: "Construction of a stage-1 egg chamber in the anterior part of the germariu is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of GO:0048477 ! oogenesis +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda [Term] id: GO:0007297 @@ -49550,11 +49419,11 @@ def: "The directed movement of an ovarian follicle cell that takes place during synonym: "follicle cell migration" BROAD [] is_a: GO:0010631 ! epithelial cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000477 ! follicle cell of egg chamber +intersection_of: RO:0002565 CL:0000477 ! results in movement of follicle cell of egg chamber relationship: in_taxon NCBITaxon:50557 {all_only="true"} ! Insecta -relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of GO:0030707 ! follicle cell of egg chamber development -relationship: results_in_movement_of CL:0000477 ! follicle cell of egg chamber +relationship: RO:0002160 NCBITaxon:50557 ! only in taxon Insecta +relationship: RO:0002565 CL:0000477 ! results in movement of follicle cell of egg chamber [Term] id: GO:0007304 @@ -49564,10 +49433,10 @@ def: "The construction of a chorion-containing eggshell. An example of this is f synonym: "eggshell formation" BROAD [] is_a: GO:0030703 ! eggshell formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005307 ! chorion-containing eggshell +intersection_of: RO:0002297 UBERON:0005307 ! results in formation of anatomical entity chorion-containing eggshell relationship: has_part GO:0007306 ! egg chorion assembly relationship: part_of GO:0030707 ! follicle cell of egg chamber development -relationship: results_in_formation_of_anatomical_entity UBERON:0005307 ! chorion-containing eggshell +relationship: RO:0002297 UBERON:0005307 ! results in formation of anatomical entity chorion-containing eggshell [Term] id: GO:0007305 @@ -49592,8 +49461,8 @@ is_a: GO:0010927 ! cellular component assembly involved in morphogenesis is_a: GO:0022412 ! cellular process involved in reproduction in multicellular organism is_a: GO:0045229 ! external encapsulating structure organization intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_assembly_of GO:0042600 ! egg chorion -relationship: results_in_assembly_of GO:0042600 ! egg chorion +intersection_of: RO:0002588 GO:0042600 ! results in assembly of egg chorion +relationship: RO:0002588 GO:0042600 ! results in assembly of egg chorion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22603" xsd:anyURI [Term] @@ -49606,9 +49475,9 @@ synonym: "oocyte arrangement" EXACT [GOC:dph, GOC:tb] is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0048469 ! cell maturation intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_formation_of_anatomical_entity CL:0000023 ! oocyte +intersection_of: RO:0002297 CL:0000023 ! results in formation of anatomical entity oocyte relationship: part_of GO:0048599 ! oocyte development -relationship: results_in_formation_of_anatomical_entity CL:0000023 ! oocyte +relationship: RO:0002297 CL:0000023 ! results in formation of anatomical entity oocyte [Term] id: GO:0007309 @@ -49620,8 +49489,8 @@ synonym: "oocyte axis determination" RELATED [] is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0009798 ! axis specification intersection_of: GO:0009798 ! axis specification -intersection_of: occurs_in CL:0000023 ! oocyte -relationship: occurs_in CL:0000023 ! oocyte +intersection_of: BFO:0000066 CL:0000023 ! occurs in oocyte +relationship: BFO:0000066 CL:0000023 ! occurs in oocyte relationship: part_of GO:0007308 ! oocyte construction [Term] @@ -49634,8 +49503,8 @@ synonym: "oocyte anterior/posterior axis determination" EXACT [GOC:dph, GOC:tb] is_a: GO:0007309 ! oocyte axis specification is_a: GO:0009948 ! anterior/posterior axis specification intersection_of: GO:0009948 ! anterior/posterior axis specification -intersection_of: occurs_in CL:0000023 ! oocyte -relationship: occurs_in CL:0000023 ! oocyte +intersection_of: BFO:0000066 CL:0000023 ! occurs in oocyte +relationship: BFO:0000066 CL:0000023 ! occurs in oocyte relationship: part_of GO:0008358 ! maternal determination of anterior/posterior axis, embryo [Term] @@ -49659,7 +49528,7 @@ synonym: "zygote formation" RELATED [] is_a: GO:0009566 ! fertilization relationship: in_taxon NCBITaxon:2759 {all_only="true"} ! Eukaryota relationship: never_in_taxon NCBITaxon:58024 ! Spermatophyta -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota [Term] id: GO:0007343 @@ -49669,9 +49538,9 @@ def: "The process in which the egg becomes metabolically active, initiates prote xref: Wikipedia:Egg_activation is_a: GO:0001775 ! cell activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000025 ! egg cell -relationship: has_primary_input CL:0000025 ! egg cell +intersection_of: RO:0004009 CL:0000025 ! has primary input egg cell relationship: part_of GO:0007338 ! single fertilization +relationship: RO:0004009 CL:0000025 ! has primary input egg cell [Term] id: GO:0007346 @@ -49686,8 +49555,8 @@ synonym: "regulation of mitotic cell cycle progression" EXACT [] synonym: "regulation of progression through mitotic cell cycle" EXACT [GOC:dph, GOC:tb] is_a: GO:0051726 ! regulation of cell cycle intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0000278 ! mitotic cell cycle -relationship: regulates GO:0000278 ! mitotic cell cycle +intersection_of: RO:0002211 GO:0000278 ! regulates (processual) mitotic cell cycle +relationship: RO:0002211 GO:0000278 ! regulates (processual) mitotic cell cycle [Term] id: GO:0007350 @@ -49712,8 +49581,8 @@ namespace: biological_process def: "The specification of the anterior/posterior axis of the embryo by products of genes expressed in the zygote; exemplified in insects by the gap genes, pair rule genes and segment polarity gene cascade." [http://fly.ebi.ac.uk/allied-data/lk/interactive-fly/aimain/1aahome.htm, ISBN:0879694238] is_a: GO:0008595 ! anterior/posterior axis specification, embryo intersection_of: GO:0008595 ! anterior/posterior axis specification, embryo -intersection_of: occurs_in CL:0000365 ! animal zygote -relationship: occurs_in CL:0000365 ! animal zygote +intersection_of: BFO:0000066 CL:0000365 ! occurs in animal zygote +relationship: BFO:0000066 CL:0000365 ! occurs in animal zygote [Term] id: GO:0007369 @@ -49734,9 +49603,9 @@ namespace: biological_process def: "Formation of the amnioserosa, an epithelium that occupies a hole in the embryonic dorsal epidermis. This occurs by the transformation of a narrow strip of cells at the dorsal midline of the blastoderm from columnar to squamous cells, accompanied by a lateral shift." [ISBN:0879694238] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0010302 ! amnioserosa +intersection_of: RO:0002297 UBERON:0010302 ! results in formation of anatomical entity amnioserosa relationship: part_of GO:0010004 ! gastrulation involving germ band extension -relationship: results_in_formation_of_anatomical_entity UBERON:0010302 ! amnioserosa +relationship: RO:0002297 UBERON:0010302 ! results in formation of anatomical entity amnioserosa [Term] id: GO:0007389 @@ -49756,8 +49625,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the ectoderm over time, from its formation to the mature structure. In animal embryos, the ectoderm is the outer germ layer of the embryo, formed during gastrulation." [GOC:dph, GOC:tb] is_a: GO:0009888 ! tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000924 ! ectoderm -relationship: results_in_development_of UBERON:0000924 ! ectoderm +intersection_of: RO:0002296 UBERON:0000924 ! results in development of ectoderm +relationship: RO:0002296 UBERON:0000924 ! results in development of ectoderm [Term] id: GO:0007399 @@ -49768,8 +49637,8 @@ subset: goslim_drosophila synonym: "pan-neural process" RELATED [] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001016 ! nervous system -relationship: results_in_development_of UBERON:0001016 ! nervous system +intersection_of: RO:0002296 UBERON:0001016 ! results in development of nervous system +relationship: RO:0002296 UBERON:0001016 ! results in development of nervous system [Term] id: GO:0007405 @@ -49780,11 +49649,11 @@ alt_id: GO:0043350 def: "The expansion of a neuroblast population by cell division. A neuroblast is any cell that will divide and give rise to a neuron." [GOC:ai, GOC:mtg_sensu, GOC:sart] is_a: GO:0061351 ! neural precursor cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: acts_on_population_of CL:0000031 ! neuroblast (sensu Vertebrata) +intersection_of: RO:0012003 CL:0000031 ! acts on population of neuroblast (sensu Vertebrata) relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa relationship: part_of GO:0048699 ! generation of neurons +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0012003 CL:0000031 ! acts on population of neuroblast (sensu Vertebrata) [Term] id: GO:0007406 @@ -49800,8 +49669,8 @@ is_a: GO:0050768 ! negative regulation of neurogenesis is_a: GO:1902692 ! regulation of neuroblast proliferation is_a: GO:2000178 ! negative regulation of neural precursor cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007405 ! neuroblast proliferation -relationship: negatively_regulates GO:0007405 ! neuroblast proliferation +intersection_of: RO:0002212 GO:0007405 ! negatively regulates neuroblast proliferation +relationship: RO:0002212 GO:0007405 ! negatively regulates neuroblast proliferation [Term] id: GO:0007407 @@ -49812,11 +49681,11 @@ alt_id: GO:0043352 def: "A change in the morphology or behavior of a neuroblast resulting from exposure to an activating factor such as a cellular or soluble ligand." [GOC:go_curators, GOC:mtg_sensu] is_a: GO:0001775 ! cell activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: has_primary_input CL:0000031 ! neuroblast (sensu Vertebrata) +intersection_of: RO:0004009 CL:0000031 ! has primary input neuroblast (sensu Vertebrata) relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa relationship: part_of GO:0048699 ! generation of neurons +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0004009 CL:0000031 ! has primary input neuroblast (sensu Vertebrata) [Term] id: GO:0007409 @@ -49830,10 +49699,10 @@ synonym: "axon morphogenesis" EXACT [GOC:bf, PMID:23517308] synonym: "neuron long process generation" EXACT systematic_synonym [] is_a: GO:0048812 ! neuron projection morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of GO:0030424 ! axon +intersection_of: RO:0002298 GO:0030424 ! results in morphogenesis of axon relationship: part_of GO:0048667 ! cell morphogenesis involved in neuron differentiation relationship: part_of GO:0061564 ! axon development -relationship: results_in_morphogenesis_of GO:0030424 ! axon +relationship: RO:0002298 GO:0030424 ! results in morphogenesis of axon [Term] id: GO:0007416 @@ -49847,9 +49716,9 @@ xref: Wikipedia:Synaptogenesis is_a: GO:0034329 ! cell junction assembly is_a: GO:0050808 ! synapse organization intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_assembly_of GO:0045202 ! synapse +intersection_of: RO:0002588 GO:0045202 ! results in assembly of synapse relationship: part_of GO:0007399 ! nervous system development -relationship: results_in_assembly_of GO:0045202 ! synapse +relationship: RO:0002588 GO:0045202 ! results in assembly of synapse [Term] id: GO:0007417 @@ -49860,9 +49729,9 @@ synonym: "CNS development" EXACT [] xref: Wikipedia:Neural_development is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001017 ! central nervous system +intersection_of: RO:0002296 UBERON:0001017 ! results in development of central nervous system relationship: part_of GO:0007399 ! nervous system development -relationship: results_in_development_of UBERON:0001017 ! central nervous system +relationship: RO:0002296 UBERON:0001017 ! results in development of central nervous system [Term] id: GO:0007418 @@ -49871,9 +49740,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the ventral midline over time, from its formation to the mature structure. In protostomes (such as insects, snails and worms) as well as deuterostomes (vertebrates), the midline is an embryonic region that functions in patterning of the adjacent nervous tissue. The ventral midline in insects is a cell population extending along the ventral surface of the embryo and is the region from which cells detach to form the ventrally located nerve cords. In vertebrates, the midline is originally located dorsally. During development, it folds inwards and becomes the ventral part of the dorsally located neural tube and is then called the ventral midline, or floor plate." [GOC:bf, GOC:go_curators, PMID:12075342] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0009571 ! ventral midline +intersection_of: RO:0002296 UBERON:0009571 ! results in development of ventral midline relationship: part_of GO:0007417 ! central nervous system development -relationship: results_in_development_of UBERON:0009571 ! ventral midline +relationship: RO:0002296 UBERON:0009571 ! results in development of ventral midline [Term] id: GO:0007419 @@ -49882,9 +49751,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the ventral cord over time, from its formation to the mature structure. The ventral cord is one of the distinguishing traits of the central nervous system of all arthropods (such as insects, crustaceans and arachnids) as well as many other invertebrates, such as the annelid worms." [GOC:bf, GOC:go_curators, PMID:30826502] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000934 ! ventral nerve cord +intersection_of: RO:0002296 UBERON:0000934 ! results in development of ventral nerve cord relationship: part_of GO:0007417 ! central nervous system development -relationship: results_in_development_of UBERON:0000934 ! ventral nerve cord +relationship: RO:0002296 UBERON:0000934 ! results in development of ventral nerve cord [Term] id: GO:0007420 @@ -49893,10 +49762,10 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.)." [GOC:dph, GOC:jid, GOC:tb, UBERON:0000955] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000955 ! brain +intersection_of: RO:0002296 UBERON:0000955 ! results in development of brain relationship: part_of GO:0007417 ! central nervous system development relationship: part_of GO:0060322 ! head development -relationship: results_in_development_of UBERON:0000955 ! brain +relationship: RO:0002296 UBERON:0000955 ! results in development of brain [Term] id: GO:0007422 @@ -49905,9 +49774,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands." [GOC:go_curators, UBERON:0000010] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000010 ! peripheral nervous system +intersection_of: RO:0002296 UBERON:0000010 ! results in development of peripheral nervous system relationship: part_of GO:0007399 ! nervous system development -relationship: results_in_development_of UBERON:0000010 ! peripheral nervous system +relationship: RO:0002296 UBERON:0000010 ! results in development of peripheral nervous system [Term] id: GO:0007423 @@ -49918,8 +49787,8 @@ subset: goslim_drosophila synonym: "sense organ development" EXACT [GOC:dph] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000020 ! sense organ -relationship: results_in_development_of UBERON:0000020 ! sense organ +intersection_of: RO:0002296 UBERON:0000020 ! results in development of sense organ +relationship: RO:0002296 UBERON:0000020 ! results in development of sense organ [Term] id: GO:0007424 @@ -49929,10 +49798,10 @@ def: "The process whose specific outcome is the progression of an open tracheal comment: See also the fly_anatomy.ontology term 'tracheal system ; FBbt:00005024'. is_a: GO:0060541 ! respiratory system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005155 ! open tracheal system +intersection_of: RO:0002296 UBERON:0005155 ! results in development of open tracheal system relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda -relationship: results_in_development_of UBERON:0005155 ! open tracheal system +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda +relationship: RO:0002296 UBERON:0005155 ! results in development of open tracheal system [Term] id: GO:0007431 @@ -49942,9 +49811,9 @@ def: "The process whose specific outcome is the progression of the salivary glan subset: goslim_drosophila is_a: GO:0048732 ! gland development intersection_of: GO:0048732 ! gland development -intersection_of: results_in_development_of UBERON:0001044 ! saliva-secreting gland +intersection_of: RO:0002296 UBERON:0001044 ! results in development of saliva-secreting gland relationship: part_of GO:0035272 ! exocrine system development -relationship: results_in_development_of UBERON:0001044 ! saliva-secreting gland +relationship: RO:0002296 UBERON:0001044 ! results in development of saliva-secreting gland [Term] id: GO:0007435 @@ -49953,9 +49822,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the salivary gland are generated and organized." [GOC:jid] is_a: GO:0022612 ! gland morphogenesis intersection_of: GO:0022612 ! gland morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001044 ! saliva-secreting gland +intersection_of: RO:0002298 UBERON:0001044 ! results in morphogenesis of saliva-secreting gland relationship: part_of GO:0007431 ! salivary gland development -relationship: results_in_morphogenesis_of UBERON:0001044 ! saliva-secreting gland +relationship: RO:0002298 UBERON:0001044 ! results in morphogenesis of saliva-secreting gland [Term] id: GO:0007439 @@ -49965,9 +49834,9 @@ def: "The process whose specific outcome is the progression of the ectodermal di synonym: "ectodermal gut development" RELATED [GOC:dph] is_a: GO:0048729 ! tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0004906 ! ectodermal part of digestive tract +intersection_of: RO:0002297 UBERON:0004906 ! results in formation of anatomical entity ectodermal part of digestive tract relationship: part_of GO:0048565 ! digestive tract development -relationship: results_in_formation_of_anatomical_entity UBERON:0004906 ! ectodermal part of digestive tract +relationship: RO:0002297 UBERON:0004906 ! results in formation of anatomical entity ectodermal part of digestive tract [Term] id: GO:0007440 @@ -49976,9 +49845,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the foregut are generated and organized." [GOC:jid] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001041 ! foregut +intersection_of: RO:0002298 UBERON:0001041 ! results in morphogenesis of foregut relationship: part_of GO:0048546 ! digestive tract morphogenesis -relationship: results_in_morphogenesis_of UBERON:0001041 ! foregut +relationship: RO:0002298 UBERON:0001041 ! results in morphogenesis of foregut [Term] id: GO:0007442 @@ -49987,10 +49856,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the hindgut are generated and organized." [GOC:jid] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001046 ! hindgut +intersection_of: RO:0002298 UBERON:0001046 ! results in morphogenesis of hindgut relationship: part_of GO:0048546 ! digestive tract morphogenesis relationship: part_of GO:0061525 ! hindgut development -relationship: results_in_morphogenesis_of UBERON:0001046 ! hindgut +relationship: RO:0002298 UBERON:0001046 ! results in morphogenesis of hindgut [Term] id: GO:0007443 @@ -50001,10 +49870,10 @@ comment: See also the fly_anatomy.ontology term 'Malpighian tubule ; FBbt:000057 is_a: GO:0048598 ! embryonic morphogenesis is_a: GO:0061333 ! renal tubule morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001054 ! Malpighian tubule +intersection_of: RO:0002298 UBERON:0001054 ! results in morphogenesis of Malpighian tubule relationship: part_of GO:0048619 ! embryonic hindgut morphogenesis relationship: part_of GO:0072002 ! Malpighian tubule development -relationship: results_in_morphogenesis_of UBERON:0001054 ! Malpighian tubule +relationship: RO:0002298 UBERON:0001054 ! results in morphogenesis of Malpighian tubule [Term] id: GO:0007444 @@ -50013,10 +49882,10 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the imaginal disc over time, from its formation to the metamorphosis to form adult structures. Imaginal discs are epithelial infoldings in the larvae of holometabolous insects that develop into adult structures (legs, antennae, wings, etc.)." [GOC:bf, ISBN:0879694238] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000939 ! imaginal disc +intersection_of: RO:0002296 UBERON:0000939 ! results in development of imaginal disc relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda -relationship: results_in_development_of UBERON:0000939 ! imaginal disc +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda +relationship: RO:0002296 UBERON:0000939 ! results in development of imaginal disc [Term] id: GO:0007446 @@ -50025,9 +49894,9 @@ namespace: biological_process def: "The increase in mass of imaginal discs by cell proliferation prior to metamorphosis. Imaginal discs are epithelial infoldings in the larvae of holometabolous insects that develop into adult structures (legs, antennae, wings, etc.) during metamorphosis from larval to adult form." [GOC:bf, GOC:jid, PMID:10679387] is_a: GO:0048589 ! developmental growth intersection_of: GO:0048589 ! developmental growth -intersection_of: results_in_growth_of UBERON:0000939 ! imaginal disc +intersection_of: RO:0002343 UBERON:0000939 ! results in growth of imaginal disc relationship: part_of GO:0007444 ! imaginal disc development -relationship: results_in_growth_of UBERON:0000939 ! imaginal disc +relationship: RO:0002343 UBERON:0000939 ! results in growth of imaginal disc [Term] id: GO:0007455 @@ -50064,9 +49933,9 @@ synonym: "wing morphogenesis" EXACT [] is_a: GO:0035114 ! imaginal disc-derived appendage morphogenesis is_a: GO:0035120 ! post-embryonic appendage morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000984 ! imaginal disc-derived wing +intersection_of: RO:0002298 UBERON:0000984 ! results in morphogenesis of imaginal disc-derived wing relationship: part_of GO:0007472 ! wing disc morphogenesis -relationship: results_in_morphogenesis_of UBERON:0000984 ! imaginal disc-derived wing +relationship: RO:0002298 UBERON:0000984 ! results in morphogenesis of imaginal disc-derived wing [Term] id: GO:0007478 @@ -50085,11 +49954,11 @@ def: "The process in which the anatomical structures of a leg derived from an im is_a: GO:0035114 ! imaginal disc-derived appendage morphogenesis is_a: GO:0035120 ! post-embryonic appendage morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005895 ! insect leg +intersection_of: RO:0002298 UBERON:0005895 ! results in morphogenesis of insect leg relationship: in_taxon NCBITaxon:33392 {all_only="true"} ! Endopterygota -relationship: only_in_taxon NCBITaxon:33392 ! Endopterygota relationship: part_of GO:0007478 ! leg disc morphogenesis -relationship: results_in_morphogenesis_of UBERON:0005895 ! insect leg +relationship: RO:0002160 NCBITaxon:33392 ! only in taxon Endopterygota +relationship: RO:0002298 UBERON:0005895 ! results in morphogenesis of insect leg [Term] id: GO:0007481 @@ -50107,9 +49976,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the haltere over time, from its formation to the mature structure. The haltere is the club-shaped 'balancers' found on each side of the metathorax among the true flies (Diptera). They are the much-modified hind wings." [GOC:jid, PMID:32659004] is_a: GO:0048737 ! imaginal disc-derived appendage development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000987 ! haltere +intersection_of: RO:0002296 UBERON:0000987 ! results in development of haltere relationship: part_of GO:0035216 ! haltere disc development -relationship: results_in_development_of UBERON:0000987 ! haltere +relationship: RO:0002296 UBERON:0000987 ! results in development of haltere [Term] id: GO:0007488 @@ -50120,8 +49989,8 @@ synonym: "histoblast metamorphosis" EXACT [] is_a: GO:0000902 ! cell morphogenesis is_a: GO:0007560 ! imaginal disc morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of CL:0000373 ! histoblast -relationship: results_in_morphogenesis_of CL:0000373 ! histoblast +intersection_of: RO:0002298 CL:0000373 ! results in morphogenesis of histoblast +relationship: RO:0002298 CL:0000373 ! results in morphogenesis of histoblast [Term] id: GO:0007492 @@ -50130,8 +49999,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues." [GOC:dph, GOC:tb] is_a: GO:0009888 ! tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000925 ! endoderm -relationship: results_in_development_of UBERON:0000925 ! endoderm +intersection_of: RO:0002296 UBERON:0000925 ! results in development of endoderm +relationship: RO:0002296 UBERON:0000925 ! results in development of endoderm [Term] id: GO:0007494 @@ -50140,8 +50009,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the midgut over time, from its formation to the mature structure. The midgut is the middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine." [GOC:jid, UBERON:0001045] is_a: GO:0048565 ! digestive tract development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001045 ! midgut -relationship: results_in_development_of UBERON:0001045 ! midgut +intersection_of: RO:0002296 UBERON:0001045 ! results in development of midgut +relationship: RO:0002296 UBERON:0001045 ! results in development of midgut [Term] id: GO:0007498 @@ -50151,8 +50020,8 @@ def: "The process whose specific outcome is the progression of the mesoderm over subset: goslim_drosophila is_a: GO:0009888 ! tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000926 ! mesoderm -relationship: results_in_development_of UBERON:0000926 ! mesoderm +intersection_of: RO:0002296 UBERON:0000926 ! results in development of mesoderm +relationship: RO:0002296 UBERON:0000926 ! results in development of mesoderm [Term] id: GO:0007503 @@ -50161,10 +50030,10 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the fat body over time, from its formation to the mature structure. A fat body is an insect gland dorsal to the insect gut, with a function analogous to that of the vertebrate liver. It is a storage organ for fats, glycogen and protein and is a major site of intermediary metabolism." [ISBN:0582227089] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003917 ! arthropod fat body +intersection_of: RO:0002296 UBERON:0003917 ! results in development of arthropod fat body relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda -relationship: results_in_development_of UBERON:0003917 ! arthropod fat body +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda +relationship: RO:0002296 UBERON:0003917 ! results in development of arthropod fat body [Term] id: GO:0007506 @@ -50175,9 +50044,9 @@ is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0007498 ! mesoderm development is_a: GO:0060485 ! mesenchyme development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003855 ! gonad mesenchyme +intersection_of: RO:0002296 UBERON:0003855 ! results in development of gonad mesenchyme relationship: part_of GO:0008406 ! gonad development -relationship: results_in_development_of UBERON:0003855 ! gonad mesenchyme +relationship: RO:0002296 UBERON:0003855 ! results in development of gonad mesenchyme [Term] id: GO:0007507 @@ -50190,10 +50059,10 @@ synonym: "dorsal vessel development" NARROW [] xref: Wikipedia:Heart_development is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0007100 ! primary circulatory organ +intersection_of: RO:0002296 UBERON:0007100 ! results in development of primary circulatory organ relationship: part_of GO:0072359 ! circulatory system development relationship: present_in_taxon NCBITaxon:7227 ! Drosophila melanogaster -relationship: results_in_development_of UBERON:0007100 ! primary circulatory organ +relationship: RO:0002296 UBERON:0007100 ! results in development of primary circulatory organ [Term] id: GO:0007516 @@ -50203,11 +50072,11 @@ def: "The process whose specific outcome is the progression of the hemocyte over synonym: "arthropod blood cell development" EXACT [] is_a: GO:0030097 ! hemopoiesis intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of CL:0000387 ! hemocyte (sensu Arthropoda) +intersection_of: RO:0002296 CL:0000387 ! results in development of hemocyte (sensu Arthropoda) relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of GO:0042386 ! hemocyte differentiation -relationship: results_in_development_of CL:0000387 ! hemocyte (sensu Arthropoda) +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda +relationship: RO:0002296 CL:0000387 ! results in development of hemocyte (sensu Arthropoda) [Term] id: GO:0007517 @@ -50217,8 +50086,8 @@ def: "The process whose specific outcome is the progression of the muscle over t is_a: GO:0048513 ! animal organ development is_a: GO:0061061 ! muscle structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001630 ! muscle organ -relationship: results_in_development_of UBERON:0001630 ! muscle organ +intersection_of: RO:0002296 UBERON:0001630 ! results in development of muscle organ +relationship: RO:0002296 UBERON:0001630 ! results in development of muscle organ [Term] id: GO:0007519 @@ -50229,9 +50098,9 @@ def: "The developmental sequence of events leading to the formation of adult ske synonym: "myogenesis" RELATED [] is_a: GO:0014706 ! striated muscle tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001134 ! skeletal muscle tissue +intersection_of: RO:0002296 UBERON:0001134 ! results in development of skeletal muscle tissue relationship: part_of GO:0060538 ! skeletal muscle organ development -relationship: results_in_development_of UBERON:0001134 ! skeletal muscle tissue +relationship: RO:0002296 UBERON:0001134 ! results in development of skeletal muscle tissue [Term] id: GO:0007525 @@ -50240,8 +50109,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the somatic muscle over time, from its formation to the mature structure. Somatic muscles are striated muscle structures that connect to the exoskeleton or cuticle." [GOC:jid, GOC:mtg_muscle] is_a: GO:0061061 ! muscle structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0014895 ! somatic muscle, invertebrate -relationship: results_in_development_of UBERON:0014895 ! somatic muscle, invertebrate +intersection_of: RO:0002296 UBERON:0014895 ! results in development of somatic muscle, invertebrate +relationship: RO:0002296 UBERON:0014895 ! results in development of somatic muscle, invertebrate [Term] id: GO:0007528 @@ -50253,8 +50122,8 @@ synonym: "neuromuscular junction stability" RELATED [GOC:pr] synonym: "NMJ stability" RELATED [GOC:pr] is_a: GO:0050808 ! synapse organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0031594 ! neuromuscular junction -relationship: results_in_organization_of GO:0031594 ! neuromuscular junction +intersection_of: RO:0002592 GO:0031594 ! results in organization of neuromuscular junction +relationship: RO:0002592 GO:0031594 ! results in organization of neuromuscular junction [Term] id: GO:0007548 @@ -50284,9 +50153,9 @@ is_a: GO:0019747 ! regulation of isoprenoid metabolic process is_a: GO:0032350 ! regulation of hormone metabolic process is_a: GO:0043455 ! regulation of secondary metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006716 ! juvenile hormone metabolic process +intersection_of: RO:0002211 GO:0006716 ! regulates (processual) juvenile hormone metabolic process relationship: part_of GO:0002165 ! instar larval or pupal development -relationship: regulates GO:0006716 ! juvenile hormone metabolic process +relationship: RO:0002211 GO:0006716 ! regulates (processual) juvenile hormone metabolic process [Term] id: GO:0007557 @@ -50301,8 +50170,8 @@ is_a: GO:0007556 ! regulation of juvenile hormone metabolic process is_a: GO:0046885 ! regulation of hormone biosynthetic process is_a: GO:0046890 ! regulation of lipid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006718 ! juvenile hormone biosynthetic process -relationship: regulates GO:0006718 ! juvenile hormone biosynthetic process +intersection_of: RO:0002211 GO:0006718 ! regulates (processual) juvenile hormone biosynthetic process +relationship: RO:0002211 GO:0006718 ! regulates (processual) juvenile hormone biosynthetic process [Term] id: GO:0007558 @@ -50313,9 +50182,9 @@ is_a: GO:0032368 ! regulation of lipid transport is_a: GO:0044060 ! regulation of endocrine process is_a: GO:0046883 ! regulation of hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0045443 ! juvenile hormone secretion -relationship: regulates GO:0045443 ! juvenile hormone secretion -relationship: regulates GO:0050886 ! endocrine process +intersection_of: RO:0002211 GO:0045443 ! regulates (processual) juvenile hormone secretion +relationship: RO:0002211 GO:0045443 ! regulates (processual) juvenile hormone secretion +relationship: RO:0002211 GO:0050886 ! regulates (processual) endocrine process [Term] id: GO:0007560 @@ -50326,11 +50195,11 @@ def: "The process in which the anatomical structures derived from an imaginal di synonym: "imaginal disc metamorphosis" EXACT [] is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000939 ! imaginal disc +intersection_of: RO:0002298 UBERON:0000939 ! results in morphogenesis of imaginal disc relationship: part_of GO:0007444 ! imaginal disc development relationship: part_of GO:0007552 ! metamorphosis relationship: part_of GO:0048707 ! instar larval or pupal morphogenesis -relationship: results_in_morphogenesis_of UBERON:0000939 ! imaginal disc +relationship: RO:0002298 UBERON:0000939 ! results in morphogenesis of imaginal disc [Term] id: GO:0007562 @@ -50348,9 +50217,9 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the emergence of an insect from a pupa-case or of a larva from an egg." [GOC:go_curators, ISBN:0198600461] is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007562 ! eclosion -relationship: regulates GO:0007275 ! multicellular organism development -relationship: regulates GO:0007562 ! eclosion +intersection_of: RO:0002211 GO:0007562 ! regulates (processual) eclosion +relationship: RO:0002211 GO:0007275 ! regulates (processual) multicellular organism development +relationship: RO:0002211 GO:0007562 ! regulates (processual) eclosion [Term] id: GO:0007565 @@ -50364,7 +50233,7 @@ xref: Wikipedia:Gestation is_a: GO:0044703 ! multi-organism reproductive process is_a: GO:0044706 ! multi-multicellular organism process relationship: in_taxon NCBITaxon:40674 {all_only="true"} ! Mammalia -relationship: only_in_taxon NCBITaxon:40674 ! Mammalia +relationship: RO:0002160 NCBITaxon:40674 ! only in taxon Mammalia [Term] id: GO:0007566 @@ -50423,7 +50292,7 @@ def: "The periodic shedding of part or all of a chitin-based cuticle, which is t synonym: "chitin-based cuticle molting cycle" EXACT [GOC:dph, GOC:tb] is_a: GO:0042303 ! molting cycle relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda [Term] id: GO:0007595 @@ -50435,8 +50304,8 @@ xref: Wikipedia:Lactation is_a: GO:0007589 ! body fluid secretion relationship: has_part GO:0060156 ! milk ejection reflex relationship: in_taxon NCBITaxon:40674 {all_only="true"} ! Mammalia -relationship: only_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of GO:0030879 ! mammary gland development +relationship: RO:0002160 NCBITaxon:40674 ! only in taxon Mammalia [Term] id: GO:0007596 @@ -50448,9 +50317,9 @@ xref: Wikipedia:Coagulation is_a: GO:0007599 ! hemostasis is_a: GO:0050817 ! coagulation intersection_of: GO:0050817 ! coagulation -intersection_of: results_in_assembly_of UBERON:0010210 ! blood clot +intersection_of: RO:0002588 UBERON:0010210 ! results in assembly of blood clot relationship: part_of GO:0042060 ! wound healing -relationship: results_in_assembly_of UBERON:0010210 ! blood clot +relationship: RO:0002588 UBERON:0010210 ! results in assembly of blood clot [Term] id: GO:0007599 @@ -50530,8 +50399,8 @@ xref: Wikipedia:Behavior is_a: GO:0032501 ! multicellular organismal process disjoint_from: GO:0032502 ! developmental process relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa -relationship: process_has_causal_agent UBERON:0001016 ! nervous system +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0002608 UBERON:0001016 ! process has causal agent nervous system created_by: jl creation_date: 2012-09-20T14:06:08Z @@ -50685,8 +50554,8 @@ def: "Any process that modulates the frequency, rate or extent of heart contract synonym: "regulation of cardiac contraction" EXACT [] is_a: GO:1903522 ! regulation of blood circulation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060047 ! heart contraction -relationship: regulates GO:0060047 ! heart contraction +intersection_of: RO:0002211 GO:0060047 ! regulates (processual) heart contraction +relationship: RO:0002211 GO:0060047 ! regulates (processual) heart contraction [Term] id: GO:0008017 @@ -50698,8 +50567,8 @@ synonym: "microtubule/chromatin interaction" RELATED [] xref: Reactome:R-HSA-9614343 "Viral UL47:UL48 Proteins Bind HCMV Tegumented Virion to Host Microtuble and Dynein complexs" is_a: GO:0015631 ! tubulin binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input GO:0005874 ! microtubule -relationship: has_primary_input GO:0005874 ! microtubule +intersection_of: RO:0004009 GO:0005874 ! has primary input microtubule +relationship: RO:0004009 GO:0005874 ! has primary input microtubule [Term] id: GO:0008028 @@ -50715,9 +50584,9 @@ xref: Reactome:R-HSA-5624211 "Defective SLC16A1 does not cotransport monocarboxy xref: Reactome:R-HSA-9645220 "SLC16A1:BSG cotransports monocarboxylates, H+ from extracellular region to cytosol" is_a: GO:0005342 ! organic acid transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:25384 ! monocarboxylic acid -relationship: has_primary_input CHEBI:25384 ! monocarboxylic acid +intersection_of: RO:0004009 CHEBI:25384 ! has primary input monocarboxylic acid relationship: part_of GO:0015718 ! monocarboxylic acid transport +relationship: RO:0004009 CHEBI:25384 ! has primary input monocarboxylic acid [Term] id: GO:0008056 @@ -50726,9 +50595,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the ocellus over time, from its formation to the mature structure. The ocellus is a simple visual organ of insects." [http://fly.ebi.ac.uk/.bin/cvreport2?id=FBcv0004540] is_a: GO:0007423 ! sensory organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003161 ! dorsal ocellus +intersection_of: RO:0002296 UBERON:0003161 ! results in development of dorsal ocellus relationship: part_of GO:0035214 ! eye-antennal disc development -relationship: results_in_development_of UBERON:0003161 ! dorsal ocellus +relationship: RO:0002296 UBERON:0003161 ! results in development of dorsal ocellus [Term] id: GO:0008061 @@ -50738,8 +50607,8 @@ def: "Binding to chitin, a linear polysaccharide consisting of beta-(1->4)-linke subset: goslim_drosophila is_a: GO:0097367 ! carbohydrate derivative binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:17029 ! chitin -relationship: has_primary_input CHEBI:17029 ! chitin +intersection_of: RO:0004009 CHEBI:17029 ! has primary input chitin +relationship: RO:0004009 CHEBI:17029 ! has primary input chitin [Term] id: GO:0008066 @@ -50748,9 +50617,9 @@ namespace: molecular_function def: "Combining with glutamate and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity." [GOC:ai, GOC:signaling] is_a: GO:0004888 ! transmembrane signaling receptor activity intersection_of: GO:0038023 ! signaling receptor activity -intersection_of: has_primary_input CHEBI:14321 ! glutamate(1-) +intersection_of: RO:0004009 CHEBI:14321 ! has primary input glutamate(1-) relationship: has_part GO:0016595 ! glutamate binding -relationship: has_primary_input CHEBI:14321 ! glutamate(1-) +relationship: RO:0004009 CHEBI:14321 ! has primary input glutamate(1-) [Term] id: GO:0008078 @@ -50760,8 +50629,8 @@ def: "The orderly movement of mesodermal cells from one site to another." [GOC:a synonym: "mesoderm cell migration" EXACT [] is_a: GO:0001667 ! ameboidal-type cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000222 ! mesodermal cell -relationship: results_in_movement_of CL:0000222 ! mesodermal cell +intersection_of: RO:0002565 CL:0000222 ! results in movement of mesodermal cell +relationship: RO:0002565 CL:0000222 ! results in movement of mesodermal cell [Term] id: GO:0008088 @@ -50775,10 +50644,12 @@ synonym: "axoplasmic transport" NARROW [] xref: Wikipedia:Axoplasmic_transport is_a: GO:0010970 ! transport along microtubule intersection_of: GO:0046907 ! intracellular transport -intersection_of: occurs_in GO:0043005 ! neuron projection -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: occurs_in GO:0043005 ! neuron projection -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: BFO:0000066 GO:0043005 ! occurs in neuron projection +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: BFO:0000066 GO:0043005 ! occurs in neuron projection +relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule [Term] id: GO:0008089 @@ -50789,12 +50660,12 @@ subset: goslim_synapse synonym: "anterograde axon cargo transport" EXACT [] is_a: GO:0098930 ! axonal transport intersection_of: GO:0006810 ! transport -intersection_of: has_target_end_location GO:0098793 ! presynapse -intersection_of: occurs_in GO:1904115 ! axon cytoplasm -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: has_target_end_location GO:0098793 ! presynapse -relationship: occurs_in GO:1904115 ! axon cytoplasm -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: BFO:0000066 GO:1904115 ! occurs in axon cytoplasm +intersection_of: RO:0002339 GO:0098793 ! has target end location presynapse +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: BFO:0000066 GO:1904115 ! occurs in axon cytoplasm +relationship: RO:0002339 GO:0098793 ! has target end location presynapse +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule [Term] id: GO:0008090 @@ -50805,12 +50676,12 @@ subset: goslim_synapse synonym: "retrograde axon cargo transport" EXACT [] is_a: GO:0098930 ! axonal transport intersection_of: GO:0006810 ! transport -intersection_of: has_target_start_location GO:0098793 ! presynapse -intersection_of: occurs_in GO:1904115 ! axon cytoplasm -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: has_target_start_location GO:0098793 ! presynapse -relationship: occurs_in GO:1904115 ! axon cytoplasm -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: BFO:0000066 GO:1904115 ! occurs in axon cytoplasm +intersection_of: RO:0002338 GO:0098793 ! has target start location presynapse +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: BFO:0000066 GO:1904115 ! occurs in axon cytoplasm +relationship: RO:0002338 GO:0098793 ! has target start location presynapse +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule [Term] id: GO:0008092 @@ -50846,8 +50717,8 @@ synonym: "establishment and maintenance of protein localization" RELATED [] synonym: "protein localisation" EXACT [GOC:mah] is_a: GO:0070727 ! cellular macromolecule localization intersection_of: GO:0051179 ! localization -intersection_of: has_primary_input PR:000000001 ! protein -relationship: has_primary_input PR:000000001 ! protein +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: RO:0004009 PR:000000001 ! has primary input protein property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23112" xsd:anyURI [Term] @@ -50899,7 +50770,7 @@ name: metabolic process namespace: biological_process alt_id: GO:0044236 alt_id: GO:0044710 -def: "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation." [GOC:go_curators, ISBN:0198547684] +def: "A cellular process consisting of the biochemical pathways by which a living organism transforms chemical substances. This includes including anabolism (biosynthetic process) and catabolism (catabolic process). Metabolic processes includes the transformation of small molecules, as well macromolecular processes such as DNA repair and replication, protein synthesis and degradation." [GOC:go_curators, ISBN:0198547684] comment: Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions. subset: gocheck_do_not_annotate subset: goslim_chembl @@ -50908,16 +50779,13 @@ subset: goslim_metagenomics subset: goslim_pir subset: goslim_plant subset: goslim_prokaryote_ribbon -synonym: "metabolic process resulting in cell growth" NARROW [] synonym: "metabolism" EXACT [] -synonym: "metabolism resulting in cell growth" NARROW [] -synonym: "multicellular organism metabolic process" NARROW [] -synonym: "single-organism metabolic process" RELATED [] xref: Wikipedia:Metabolism -is_a: GO:0008150 ! biological_process +is_a: GO:0009987 ! cellular process disjoint_from: GO:0044848 ! biological phase disjoint_from: GO:0051179 ! localization property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28932" xsd:anyURI created_by: jl creation_date: 2012-10-17T15:46:40Z @@ -50940,8 +50808,8 @@ synonym: "steroid metabolism" EXACT [] xref: Wikipedia:Steroid_metabolism is_a: GO:0006629 ! lipid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:35341 ! steroid -relationship: has_primary_input_or_output CHEBI:35341 ! steroid +intersection_of: RO:0004007 CHEBI:35341 ! has primary input or output steroid +relationship: RO:0004007 CHEBI:35341 ! has primary input or output steroid [Term] id: GO:0008206 @@ -50953,8 +50821,8 @@ is_a: GO:0008202 ! steroid metabolic process is_a: GO:0032787 ! monocarboxylic acid metabolic process is_a: GO:1901615 ! organic hydroxy compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:36235 ! bile acid anion -relationship: has_primary_input_or_output CHEBI:36235 ! bile acid anion +intersection_of: RO:0004007 CHEBI:36235 ! has primary input or output bile acid anion +relationship: RO:0004007 CHEBI:36235 ! has primary input or output bile acid anion [Term] id: GO:0008207 @@ -50963,11 +50831,10 @@ namespace: biological_process def: "The chemical reactions and pathways involving C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones." [GOC:ai] synonym: "C21-steroid hormone metabolism" EXACT [] is_a: GO:0008202 ! steroid metabolic process -is_a: GO:0009987 ! cellular process is_a: GO:0042445 ! hormone metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:64600 ! C21-steroid hormone -relationship: has_primary_input_or_output CHEBI:64600 ! C21-steroid hormone +intersection_of: RO:0004007 CHEBI:64600 ! has primary input or output C21-steroid hormone +relationship: RO:0004007 CHEBI:64600 ! has primary input or output C21-steroid hormone [Term] id: GO:0008208 @@ -50981,8 +50848,8 @@ is_a: GO:0006706 ! steroid catabolic process is_a: GO:0008207 ! C21-steroid hormone metabolic process is_a: GO:0042447 ! hormone catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:64600 ! C21-steroid hormone -relationship: has_primary_input CHEBI:64600 ! C21-steroid hormone +intersection_of: RO:0004009 CHEBI:64600 ! has primary input C21-steroid hormone +relationship: RO:0004009 CHEBI:64600 ! has primary input C21-steroid hormone [Term] id: GO:0008211 @@ -50994,8 +50861,8 @@ synonym: "glucocorticosteroid metabolic process" EXACT [] synonym: "glucocorticosteroid metabolism" EXACT [] is_a: GO:0008202 ! steroid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:24261 ! glucocorticoid -relationship: has_primary_input_or_output CHEBI:24261 ! glucocorticoid +intersection_of: RO:0004007 CHEBI:24261 ! has primary input or output glucocorticoid +relationship: RO:0004007 CHEBI:24261 ! has primary input or output glucocorticoid [Term] id: GO:0008212 @@ -51004,11 +50871,10 @@ namespace: biological_process def: "The chemical reactions and pathways involving mineralocorticoids, hormonal C21 corticosteroids synthesized from cholesterol. Mineralocorticoids act primarily on water and electrolyte balance." [ISBN:0198506732] synonym: "mineralocorticoid metabolism" EXACT [] is_a: GO:0008202 ! steroid metabolic process -is_a: GO:0009987 ! cellular process is_a: GO:0042445 ! hormone metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:25354 ! mineralocorticoid -relationship: has_primary_input_or_output CHEBI:25354 ! mineralocorticoid +intersection_of: RO:0004007 CHEBI:25354 ! has primary input or output mineralocorticoid +relationship: RO:0004007 CHEBI:25354 ! has primary input or output mineralocorticoid [Term] id: GO:0008217 @@ -51044,8 +50910,8 @@ synonym: "biogenic amine receptor" NARROW [] synonym: "G-protein coupled amine receptor activity" EXACT [] is_a: GO:0004930 ! G protein-coupled receptor activity intersection_of: GO:0004930 ! G protein-coupled receptor activity -intersection_of: has_primary_input CHEBI:32952 ! amine -relationship: has_primary_input CHEBI:32952 ! amine +intersection_of: RO:0004009 CHEBI:32952 ! has primary input amine +relationship: RO:0004009 CHEBI:32952 ! has primary input amine [Term] id: GO:0008271 @@ -51058,21 +50924,8 @@ synonym: "sulphate porter activity" EXACT [] is_a: GO:0015116 ! sulfate transmembrane transporter activity is_a: GO:0015291 ! secondary active transmembrane transporter activity intersection_of: GO:0015291 ! secondary active transmembrane transporter activity -intersection_of: has_primary_input CHEBI:16189 ! sulfate -relationship: has_primary_input CHEBI:16189 ! sulfate - -[Term] -id: GO:0008272 -name: sulfate transport -namespace: biological_process -alt_id: GO:0006870 -def: "The directed movement of sulfate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:krc] -synonym: "sulphate transport" EXACT [] -is_a: GO:0015698 ! inorganic anion transport -is_a: GO:0072348 ! sulfur compound transport -intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:16189 ! sulfate -relationship: has_primary_input CHEBI:16189 ! sulfate +intersection_of: RO:0004009 CHEBI:16189 ! has primary input sulfate +relationship: RO:0004009 CHEBI:16189 ! has primary input sulfate [Term] id: GO:0008277 @@ -51088,8 +50941,8 @@ synonym: "regulation of GPCR protein signaling pathway" EXACT [] synonym: "regulation of GPCR protein signalling pathway" EXACT [] is_a: GO:0009966 ! regulation of signal transduction intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007186 ! G protein-coupled receptor signaling pathway -relationship: regulates GO:0007186 ! G protein-coupled receptor signaling pathway +intersection_of: RO:0002211 GO:0007186 ! regulates (processual) G protein-coupled receptor signaling pathway +relationship: RO:0002211 GO:0007186 ! regulates (processual) G protein-coupled receptor signaling pathway [Term] id: GO:0008283 @@ -51121,9 +50974,9 @@ synonym: "upregulation of cell proliferation" EXACT [] is_a: GO:0042127 ! regulation of cell population proliferation is_a: GO:0048522 ! positive regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008283 ! cell population proliferation +intersection_of: RO:0002213 GO:0008283 ! positively regulates cell population proliferation relationship: never_in_taxon NCBITaxon:4751 ! Fungi -relationship: positively_regulates GO:0008283 ! cell population proliferation +relationship: RO:0002213 GO:0008283 ! positively regulates cell population proliferation [Term] id: GO:0008285 @@ -51138,9 +50991,9 @@ synonym: "negative regulation of cell proliferation" RELATED [] is_a: GO:0042127 ! regulation of cell population proliferation is_a: GO:0048523 ! negative regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008283 ! cell population proliferation -relationship: negatively_regulates GO:0008283 ! cell population proliferation +intersection_of: RO:0002212 GO:0008283 ! negatively regulates cell population proliferation relationship: never_in_taxon NCBITaxon:4751 ! Fungi +relationship: RO:0002212 GO:0008283 ! negatively regulates cell population proliferation [Term] id: GO:0008286 @@ -51151,8 +51004,8 @@ synonym: "daf-2 receptor signaling pathway" NARROW [] synonym: "insulin receptor signalling pathway" EXACT [] is_a: GO:0007169 ! cell surface receptor protein tyrosine kinase signaling pathway relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: part_of GO:0032869 ! cellular response to insulin stimulus +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa [Term] id: GO:0008289 @@ -51175,8 +51028,8 @@ subset: goslim_prokaryote_ribbon subset: goslim_yeast is_a: GO:0005488 ! binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:18059 ! lipid -relationship: has_primary_input CHEBI:18059 ! lipid +intersection_of: RO:0004009 CHEBI:18059 ! has primary input lipid +relationship: RO:0004009 CHEBI:18059 ! has primary input lipid [Term] id: GO:0008291 @@ -51186,8 +51039,8 @@ def: "The chemical reactions and pathways involving acetylcholine, the acetic ac synonym: "acetylcholine metabolism" EXACT [] is_a: GO:1900619 ! acetate ester metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:15355 ! acetylcholine -relationship: has_primary_input_or_output CHEBI:15355 ! acetylcholine +intersection_of: RO:0004007 CHEBI:15355 ! has primary input or output acetylcholine +relationship: RO:0004007 CHEBI:15355 ! has primary input or output acetylcholine [Term] id: GO:0008292 @@ -51201,8 +51054,8 @@ synonym: "acetylcholine synthesis" EXACT [] is_a: GO:0008291 ! acetylcholine metabolic process is_a: GO:1900620 ! acetate ester biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:15355 ! acetylcholine -relationship: has_primary_output CHEBI:15355 ! acetylcholine +intersection_of: RO:0004008 CHEBI:15355 ! has primary output acetylcholine +relationship: RO:0004008 CHEBI:15355 ! has primary output acetylcholine [Term] id: GO:0008299 @@ -51224,10 +51077,9 @@ synonym: "polyterpene biosynthetic process" NARROW [] xref: MetaCyc:POLYISOPRENSYN-PWY is_a: GO:0006720 ! isoprenoid metabolic process is_a: GO:0008610 ! lipid biosynthetic process -is_a: GO:0044249 ! cellular biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:24913 ! isoprenoid -relationship: has_primary_output CHEBI:24913 ! isoprenoid +intersection_of: RO:0004008 CHEBI:24913 ! has primary output isoprenoid +relationship: RO:0004008 CHEBI:24913 ! has primary output isoprenoid [Term] id: GO:0008300 @@ -51245,10 +51097,11 @@ synonym: "polyisoprenoid degradation" NARROW [] synonym: "polyterpene catabolic process" NARROW [] synonym: "polyterpene catabolism" NARROW [] is_a: GO:0006720 ! isoprenoid metabolic process -is_a: GO:0044242 ! cellular lipid catabolic process +is_a: GO:0016042 ! lipid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:24913 ! isoprenoid -relationship: has_primary_input CHEBI:24913 ! isoprenoid +intersection_of: RO:0004009 CHEBI:24913 ! has primary input isoprenoid +relationship: RO:0004009 CHEBI:24913 ! has primary input isoprenoid +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0008306 @@ -51293,11 +51146,11 @@ xref: Reactome:R-HSA-9698933 "HCMV B Nucleocapsid Translocation" is_a: GO:0022857 ! transmembrane transporter activity is_a: GO:0140318 ! protein transporter activity intersection_of: GO:0005215 ! transporter activity -intersection_of: has_primary_input PR:000000001 ! protein -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input PR:000000001 ! protein -relationship: part_of GO:0071806 ! protein transmembrane transport -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: part_of GO:0071806 {source="GO_REF:0000090"} ! protein transmembrane transport +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 PR:000000001 ! has primary input protein [Term] id: GO:0008324 @@ -51308,9 +51161,9 @@ synonym: "cation transmembrane transporter activity" BROAD [] synonym: "transmembrane cation transporter activity" EXACT [] is_a: GO:0015075 ! monoatomic ion transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:23906 ! monoatomic cation -relationship: has_primary_input CHEBI:23906 ! monoatomic cation +intersection_of: RO:0004009 CHEBI:23906 ! has primary input monoatomic cation relationship: part_of GO:0098655 ! monoatomic cation transmembrane transport +relationship: RO:0004009 CHEBI:23906 ! has primary input monoatomic cation property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24479" xsd:anyURI [Term] @@ -51322,11 +51175,11 @@ def: "The orderly movement of a glial cell, non-neuronal cells that provide supp synonym: "glia cell migration" EXACT [] is_a: GO:0016477 ! cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000125 ! glial cell +intersection_of: RO:0002565 CL:0000125 ! results in movement of glial cell relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa relationship: part_of GO:0042063 ! gliogenesis -relationship: results_in_movement_of CL:0000125 ! glial cell +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0002565 CL:0000125 ! results in movement of glial cell [Term] id: GO:0008348 @@ -51346,8 +51199,8 @@ is_a: GO:0002921 ! negative regulation of humoral immune response is_a: GO:0031348 ! negative regulation of defense response is_a: GO:0032102 ! negative regulation of response to external stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0019730 ! antimicrobial humoral response -relationship: negatively_regulates GO:0019730 ! antimicrobial humoral response +intersection_of: RO:0002212 GO:0019730 ! negatively regulates antimicrobial humoral response +relationship: RO:0002212 GO:0019730 ! negatively regulates antimicrobial humoral response [Term] id: GO:0008354 @@ -51359,9 +51212,9 @@ synonym: "pole cell migration" NARROW [] synonym: "primordial germ cell migration" RELATED [] is_a: GO:0016477 ! cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000586 ! germ cell +intersection_of: RO:0002565 CL:0000586 ! results in movement of germ cell relationship: part_of GO:0007276 ! gamete generation -relationship: results_in_movement_of CL:0000586 ! germ cell +relationship: RO:0002565 CL:0000586 ! results in movement of germ cell [Term] id: GO:0008355 @@ -51399,7 +51252,7 @@ synonym: "cellular axon ensheathment" EXACT [] synonym: "cellular nerve ensheathment" RELATED [] synonym: "nerve ensheathment" RELATED [] is_a: GO:0007272 ! ensheathment of neurons -relationship: has_participant GO:0030424 ! axon +relationship: RO:0000057 GO:0030424 ! has participant axon [Term] id: GO:0008406 @@ -51410,9 +51263,9 @@ synonym: "gonadogenesis" EXACT [GOC:cjm] is_a: GO:0048513 ! animal organ development is_a: GO:0048608 ! reproductive structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000991 ! gonad +intersection_of: RO:0002296 UBERON:0000991 ! results in development of gonad relationship: part_of GO:0045137 ! development of primary sexual characteristics -relationship: results_in_development_of UBERON:0000991 ! gonad +relationship: RO:0002296 UBERON:0000991 ! results in development of gonad [Term] id: GO:0008502 @@ -51421,8 +51274,8 @@ namespace: molecular_function def: "Combining with melatonin, N-acetyl-5-methoxytryptamine, to initiate a change in cell activity. Melatonin is a neuroendocrine substance that stimulates the aggregation of melanosomes in melanophores, thus lightening the skin." [GOC:ai, ISBN:0198506732] is_a: GO:0004930 ! G protein-coupled receptor activity intersection_of: GO:0038023 ! signaling receptor activity -intersection_of: has_primary_input CHEBI:16796 ! melatonin -relationship: has_primary_input CHEBI:16796 ! melatonin +intersection_of: RO:0004009 CHEBI:16796 ! has primary input melatonin +relationship: RO:0004009 CHEBI:16796 ! has primary input melatonin [Term] id: GO:0008504 @@ -51438,9 +51291,9 @@ xref: Reactome:R-HSA-444160 "VMAT1/2 can mediate the transport of biogenic amine xref: Reactome:R-HSA-5660706 "Defective SLC6A3 does not cotransport DA, Na+ from extracellular region to cytosol" is_a: GO:0022804 ! active transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:63534 ! monoamine -relationship: has_primary_input CHEBI:63534 ! monoamine +intersection_of: RO:0004009 CHEBI:63534 ! has primary input monoamine relationship: part_of GO:0015844 ! monoamine transport +relationship: RO:0004009 CHEBI:63534 ! has primary input monoamine [Term] id: GO:0008514 @@ -51452,9 +51305,9 @@ xref: Reactome:R-HSA-561041 "OAT1-3 transport organic anions with antiport of di xref: Reactome:R-HSA-9794830 "SLC22A8 transports Cipro into renal cell" is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:25696 ! organic anion -relationship: has_primary_input CHEBI:25696 ! organic anion +intersection_of: RO:0004009 CHEBI:25696 ! has primary input organic anion relationship: part_of GO:0015711 ! organic anion transport +relationship: RO:0004009 CHEBI:25696 ! has primary input organic anion [Term] id: GO:0008528 @@ -51486,9 +51339,9 @@ synonym: "testicular development" EXACT [GOC:sl] synonym: "testis development" EXACT [GOC:sl] is_a: GO:0008406 ! gonad development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000473 ! testis +intersection_of: RO:0002296 UBERON:0000473 ! results in development of testis relationship: part_of GO:0046546 ! development of primary male sexual characteristics -relationship: results_in_development_of UBERON:0000473 ! testis +relationship: RO:0002296 UBERON:0000473 ! results in development of testis [Term] id: GO:0008585 @@ -51500,10 +51353,10 @@ synonym: "ovarian development" RELATED [GOC:sl] synonym: "ovary development" RELATED [GOC:sl] is_a: GO:0008406 ! gonad development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000992 ! ovary +intersection_of: RO:0002296 UBERON:0000992 ! results in development of ovary relationship: never_in_taxon NCBITaxon:3398 ! Magnoliopsida relationship: part_of GO:0046545 ! development of primary female sexual characteristics -relationship: results_in_development_of UBERON:0000992 ! ovary +relationship: RO:0002296 UBERON:0000992 ! results in development of ovary [Term] id: GO:0008586 @@ -51513,9 +51366,9 @@ def: "The process in which anatomical structures of the veins on an imaginal dis synonym: "wing vein morphogenesis" EXACT [] is_a: GO:0009886 ! post-embryonic animal morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003194 ! imaginal disc-derived wing vein +intersection_of: RO:0002298 UBERON:0003194 ! results in morphogenesis of imaginal disc-derived wing vein relationship: part_of GO:0007476 ! imaginal disc-derived wing morphogenesis -relationship: results_in_morphogenesis_of UBERON:0003194 ! imaginal disc-derived wing vein +relationship: RO:0002298 UBERON:0003194 ! results in morphogenesis of imaginal disc-derived wing vein [Term] id: GO:0008594 @@ -51525,9 +51378,9 @@ def: "The process in which the structures of a photoreceptor cell are generated synonym: "photoreceptor development" RELATED [] is_a: GO:0048667 ! cell morphogenesis involved in neuron differentiation intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of CL:0000210 ! photoreceptor cell +intersection_of: RO:0002298 CL:0000210 ! results in morphogenesis of photoreceptor cell relationship: part_of GO:0042461 ! photoreceptor cell development -relationship: results_in_morphogenesis_of CL:0000210 ! photoreceptor cell +relationship: RO:0002298 CL:0000210 ! results in morphogenesis of photoreceptor cell [Term] id: GO:0008595 @@ -51552,8 +51405,8 @@ synonym: "lipogenesis" EXACT [GOC:sl] is_a: GO:0006629 ! lipid metabolic process is_a: GO:0009058 ! biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:18059 ! lipid -relationship: has_primary_output CHEBI:18059 ! lipid +intersection_of: RO:0004008 CHEBI:18059 ! has primary output lipid +relationship: RO:0004008 CHEBI:18059 ! has primary output lipid [Term] id: GO:0008643 @@ -51567,8 +51420,8 @@ subset: goslim_yeast synonym: "sugar transport" NARROW [] is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:16646 ! carbohydrate -relationship: has_primary_input CHEBI:16646 ! carbohydrate +intersection_of: RO:0004009 CHEBI:16646 ! has primary input carbohydrate +relationship: RO:0004009 CHEBI:16646 ! has primary input carbohydrate [Term] id: GO:0008645 @@ -51585,10 +51438,10 @@ synonym: "high-affinity hexose transport" NARROW [] synonym: "low-affinity hexose transport" NARROW [] is_a: GO:0015749 ! monosaccharide transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:18133 ! hexose -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:18133 ! hexose -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:18133 ! has primary input hexose +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:18133 ! has primary input hexose created_by: bf creation_date: 2010-04-08T10:27:23Z @@ -51606,8 +51459,8 @@ xref: Wikipedia:Amino_acid_synthesis is_a: GO:0006520 ! amino acid metabolic process is_a: GO:0009058 ! biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:35238 ! amino acid zwitterion -relationship: has_primary_output CHEBI:35238 ! amino acid zwitterion +intersection_of: RO:0004008 CHEBI:35238 ! has primary output amino-acid zwitterion +relationship: RO:0004008 CHEBI:35238 ! has primary output amino-acid zwitterion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/17904" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27304" xsd:anyURI @@ -51620,15 +51473,16 @@ synonym: "phospholipid anabolism" EXACT [] synonym: "phospholipid biosynthesis" EXACT [] synonym: "phospholipid formation" EXACT [] synonym: "phospholipid synthesis" EXACT [] -xref: MetaCyc:PHOSLIPSYN-PWY -xref: MetaCyc:PHOSLIPSYN2-PWY +xref: MetaCyc:PHOSLIPSYN-PWY {source="skos:narrowMatch"} +xref: MetaCyc:PHOSLIPSYN2-PWY {source="skos:narrowMatch"} is_a: GO:0006644 ! phospholipid metabolic process is_a: GO:0008610 ! lipid biosynthetic process is_a: GO:0090407 ! organophosphate biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:16247 ! phospholipid -relationship: has_primary_output CHEBI:16247 ! phospholipid +intersection_of: RO:0004008 CHEBI:16247 ! has primary output phospholipid +relationship: RO:0004008 CHEBI:16247 ! has primary output phospholipid property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20092" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28527" xsd:anyURI [Term] id: GO:0009056 @@ -51636,18 +51490,20 @@ name: catabolic process namespace: biological_process alt_id: GO:0044243 alt_id: GO:0044712 -def: "The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism." [ISBN:0198547684] +def: "A cellular process consisting of the biochemical pathways by which a living organism breaks down substances. This includes the breakdown of carbon compounds with the liberation of energy for use by the cell or organism." [ISBN:0198547684] subset: goslim_agr subset: goslim_chembl subset: goslim_plant subset: goslim_plant_ribbon -synonym: "breakdown" EXACT [] +synonym: "breakdown of chemical" EXACT [] +synonym: "breakdown of molecule" EXACT [] +synonym: "breakdown of substance" EXACT [] synonym: "catabolism" EXACT [] synonym: "degradation" EXACT [] -synonym: "multicellular organismal catabolic process" NARROW [] -synonym: "single-organism catabolic process" RELATED [] xref: Wikipedia:Catabolism is_a: GO:0008152 ! metabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28921" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28932" xsd:anyURI created_by: jl creation_date: 2012-10-17T15:52:35Z @@ -51670,8 +51526,8 @@ synonym: "multicellular organismal macromolecule catabolic process" NARROW [] is_a: GO:0009056 ! catabolic process is_a: GO:0043170 ! macromolecule metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:33694 ! biomacromolecule -relationship: has_primary_input CHEBI:33694 ! biomacromolecule +intersection_of: RO:0004009 CHEBI:33694 ! has primary input biomacromolecule +relationship: RO:0004009 CHEBI:33694 ! has primary input biomacromolecule [Term] id: GO:0009058 @@ -51679,7 +51535,7 @@ name: biosynthetic process namespace: biological_process alt_id: GO:0044274 alt_id: GO:0044711 -def: "The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones." [GOC:curators, ISBN:0198547684] +def: "A cellular process consisting of the biochemical pathways by which a living organism synthesizes chemical substances. This typically represents the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones." [GOC:curators, ISBN:0198547684] subset: goslim_chembl subset: goslim_metagenomics subset: goslim_plant @@ -51692,6 +51548,7 @@ synonym: "single-organism biosynthetic process" RELATED [] synonym: "synthesis" EXACT [] xref: Wikipedia:Anabolism is_a: GO:0008152 ! metabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28932" xsd:anyURI created_by: jl creation_date: 2012-10-17T15:52:18Z @@ -51709,11 +51566,11 @@ synonym: "macromolecule anabolism" EXACT [] synonym: "macromolecule biosynthesis" EXACT [] synonym: "macromolecule formation" EXACT [] synonym: "macromolecule synthesis" EXACT [] +is_a: GO:0009058 ! biosynthetic process is_a: GO:0043170 ! macromolecule metabolic process -is_a: GO:0044249 ! cellular biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:33694 ! biomacromolecule -relationship: has_primary_output CHEBI:33694 ! biomacromolecule +intersection_of: RO:0004008 CHEBI:33694 ! has primary output biomacromolecule +relationship: RO:0004008 CHEBI:33694 ! has primary output biomacromolecule property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/15249" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/25418" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI @@ -51728,11 +51585,12 @@ synonym: "fatty acid catabolism" EXACT [] synonym: "fatty acid degradation" EXACT [] xref: Wikipedia:Fatty_acid_degradation is_a: GO:0006631 ! fatty acid metabolic process -is_a: GO:0044242 ! cellular lipid catabolic process +is_a: GO:0016042 ! lipid catabolic process is_a: GO:0072329 ! monocarboxylic acid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:28868 ! fatty acid anion -relationship: has_primary_input CHEBI:28868 ! fatty acid anion +intersection_of: RO:0004009 CHEBI:28868 ! has primary input fatty acid anion +relationship: RO:0004009 CHEBI:28868 ! has primary input fatty acid anion +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0009063 @@ -51746,8 +51604,8 @@ synonym: "cellular amino acid catabolic process" EXACT [] is_a: GO:0006520 ! amino acid metabolic process is_a: GO:0009056 ! catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion -relationship: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion +relationship: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/17904" xsd:anyURI [Term] @@ -51759,8 +51617,8 @@ synonym: "glutamine family amino acid metabolism" EXACT [] is_a: GO:0170039 ! proteinogenic amino acid metabolic process is_a: GO:1901605 ! alpha-amino acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:24318 ! glutamine family amino acid -relationship: has_primary_input_or_output CHEBI:24318 ! glutamine family amino acid +intersection_of: RO:0004007 CHEBI:24318 ! has primary input or output glutamine family amino acid +relationship: RO:0004007 CHEBI:24318 ! has primary input or output glutamine family amino acid [Term] id: GO:0009065 @@ -51773,8 +51631,8 @@ synonym: "glutamine family amino acid degradation" EXACT [] is_a: GO:0009064 ! glutamine family amino acid metabolic process is_a: GO:0170040 ! proteinogenic amino acid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:24318 ! glutamine family amino acid -relationship: has_primary_input CHEBI:24318 ! glutamine family amino acid +intersection_of: RO:0004009 CHEBI:24318 ! has primary input glutamine family amino acid +relationship: RO:0004009 CHEBI:24318 ! has primary input glutamine family amino acid [Term] id: GO:0009072 @@ -51785,10 +51643,9 @@ synonym: "aromatic amino acid family metabolic process" EXACT [] synonym: "aromatic amino acid family metabolism" EXACT [] is_a: GO:0006082 ! organic acid metabolic process is_a: GO:0006520 ! amino acid metabolic process -is_a: GO:1901564 ! organonitrogen compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:33856 ! aromatic amino acid -relationship: has_primary_input_or_output CHEBI:33856 ! aromatic amino acid +intersection_of: RO:0004007 CHEBI:33856 ! has primary input or output aromatic amino acid +relationship: RO:0004007 CHEBI:33856 ! has primary input or output aromatic amino acid [Term] id: GO:0009073 @@ -51804,10 +51661,9 @@ synonym: "aromatic amino acid family synthesis" EXACT [] xref: MetaCyc:COMPLETE-ARO-PWY is_a: GO:0009072 ! aromatic amino acid metabolic process is_a: GO:0016053 ! organic acid biosynthetic process -is_a: GO:1901566 ! organonitrogen compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:33856 ! aromatic amino acid -relationship: has_primary_output CHEBI:33856 ! aromatic amino acid +intersection_of: RO:0004008 CHEBI:33856 ! has primary output aromatic amino acid +relationship: RO:0004008 CHEBI:33856 ! has primary output aromatic amino acid [Term] id: GO:0009074 @@ -51819,10 +51675,9 @@ synonym: "aromatic amino acid family catabolism" EXACT [] synonym: "aromatic amino acid family degradation" EXACT [] is_a: GO:0009072 ! aromatic amino acid metabolic process is_a: GO:0016054 ! organic acid catabolic process -is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:33856 ! aromatic amino acid -relationship: has_primary_input CHEBI:33856 ! aromatic amino acid +intersection_of: RO:0004009 CHEBI:33856 ! has primary input aromatic amino acid +relationship: RO:0004009 CHEBI:33856 ! has primary input aromatic amino acid [Term] id: GO:0009084 @@ -51836,8 +51691,8 @@ synonym: "glutamine family amino acid synthesis" EXACT [] is_a: GO:0009064 ! glutamine family amino acid metabolic process is_a: GO:0170038 ! proteinogenic amino acid biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:24318 ! glutamine family amino acid -relationship: has_primary_output CHEBI:24318 ! glutamine family amino acid +intersection_of: RO:0004008 CHEBI:24318 ! has primary output glutamine family amino acid +relationship: RO:0004008 CHEBI:24318 ! has primary output glutamine family amino acid [Term] id: GO:0009094 @@ -51858,8 +51713,8 @@ is_a: GO:0006558 ! L-phenylalanine metabolic process is_a: GO:0008652 ! amino acid biosynthetic process is_a: GO:0009095 ! aromatic amino acid family biosynthetic process, prephenate pathway intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:58095 ! L-phenylalanine zwitterion -relationship: has_primary_output CHEBI:58095 ! L-phenylalanine zwitterion +intersection_of: RO:0004008 CHEBI:58095 ! has primary output L-phenylalanine zwitterion +relationship: RO:0004008 CHEBI:58095 ! has primary output L-phenylalanine zwitterion [Term] id: GO:0009095 @@ -51873,10 +51728,10 @@ synonym: "aromatic amino acid family formation, prephenate pathway" EXACT [] synonym: "aromatic amino acid family synthesis, prephenate pathway" EXACT [] is_a: GO:0009073 ! aromatic amino acid family biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_intermediate CHEBI:57852 ! prephenate(2-) -intersection_of: has_primary_output CHEBI:33856 ! aromatic amino acid -relationship: has_intermediate CHEBI:57852 ! prephenate(2-) -relationship: has_primary_output CHEBI:33856 ! aromatic amino acid +intersection_of: RO:0002505 CHEBI:57852 ! has intermediate prephenate(2-) +intersection_of: RO:0004008 CHEBI:33856 ! has primary output aromatic amino acid +relationship: RO:0002505 CHEBI:57852 ! has intermediate prephenate(2-) +relationship: RO:0004008 CHEBI:33856 ! has primary output aromatic amino acid [Term] id: GO:0009100 @@ -51888,8 +51743,8 @@ synonym: "glycoprotein metabolism" EXACT [] is_a: GO:0043170 ! macromolecule metabolic process is_a: GO:1901135 ! carbohydrate derivative metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:17089 ! glycoprotein -relationship: has_primary_input_or_output CHEBI:17089 ! glycoprotein +intersection_of: RO:0004007 CHEBI:17089 ! has primary input or output glycoprotein +relationship: RO:0004007 CHEBI:17089 ! has primary input or output glycoprotein [Term] id: GO:0009101 @@ -51904,8 +51759,8 @@ is_a: GO:0009059 ! macromolecule biosynthetic process is_a: GO:0009100 ! glycoprotein metabolic process is_a: GO:1901137 ! carbohydrate derivative biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:17089 ! glycoprotein -relationship: has_primary_output CHEBI:17089 ! glycoprotein +intersection_of: RO:0004008 CHEBI:17089 ! has primary output glycoprotein +relationship: RO:0004008 CHEBI:17089 ! has primary output glycoprotein [Term] id: GO:0009112 @@ -51914,10 +51769,9 @@ namespace: biological_process def: "The chemical reactions and pathways involving a nucleobase, a nitrogenous base that is a constituent of a nucleic acid, e.g. the purines: adenine, guanine, hypoxanthine, xanthine and the pyrimidines: cytosine, uracil, thymine." [GOC:ma] synonym: "nucleobase metabolism" EXACT [] is_a: GO:0055086 ! nucleobase-containing small molecule metabolic process -is_a: GO:1901564 ! organonitrogen compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:18282 ! nucleobase -relationship: has_primary_input_or_output CHEBI:18282 ! nucleobase +intersection_of: RO:0004007 CHEBI:18282 ! has primary input or output nucleobase +relationship: RO:0004007 CHEBI:18282 ! has primary input or output nucleobase [Term] id: GO:0009113 @@ -51934,8 +51788,8 @@ is_a: GO:0006144 ! purine nucleobase metabolic process is_a: GO:0046112 ! nucleobase biosynthetic process is_a: GO:0072522 ! purine-containing compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26386 ! purine nucleobase -relationship: has_primary_output CHEBI:26386 ! purine nucleobase +intersection_of: RO:0004008 CHEBI:26386 ! has primary output purine nucleobase +relationship: RO:0004008 CHEBI:26386 ! has primary output purine nucleobase [Term] id: GO:0009116 @@ -51945,11 +51799,10 @@ def: "The chemical reactions and pathways involving a nucleoside, a nucleobase l subset: goslim_pir synonym: "nucleoside metabolism" EXACT [] is_a: GO:0055086 ! nucleobase-containing small molecule metabolic process -is_a: GO:1901564 ! organonitrogen compound metabolic process is_a: GO:1901657 ! glycosyl compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:33838 ! nucleoside -relationship: has_primary_input_or_output CHEBI:33838 ! nucleoside +intersection_of: RO:0004007 CHEBI:33838 ! has primary input or output nucleoside +relationship: RO:0004007 CHEBI:33838 ! has primary input or output nucleoside [Term] id: GO:0009117 @@ -51960,8 +51813,8 @@ subset: goslim_pir synonym: "nucleotide metabolism" EXACT [] is_a: GO:0006753 ! nucleoside phosphate metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:36976 ! nucleotide -relationship: has_primary_input_or_output CHEBI:36976 ! nucleotide +intersection_of: RO:0004007 CHEBI:36976 ! has primary input or output nucleotide +relationship: RO:0004007 CHEBI:36976 ! has primary input or output nucleotide [Term] id: GO:0009118 @@ -51972,8 +51825,8 @@ synonym: "regulation of nucleoside metabolism" EXACT [] is_a: GO:0019219 ! regulation of nucleobase-containing compound metabolic process is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009116 ! nucleoside metabolic process -relationship: regulates GO:0009116 ! nucleoside metabolic process +intersection_of: RO:0002211 GO:0009116 ! regulates (processual) nucleoside metabolic process +relationship: RO:0002211 GO:0009116 ! regulates (processual) nucleoside metabolic process [Term] id: GO:0009119 @@ -51983,8 +51836,8 @@ def: "The chemical reactions and pathways involving any ribonucleoside, a nucleo synonym: "ribonucleoside metabolism" EXACT [] is_a: GO:0009116 ! nucleoside metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:18254 ! ribonucleoside -relationship: has_primary_input_or_output CHEBI:18254 ! ribonucleoside +intersection_of: RO:0004007 CHEBI:18254 ! has primary input or output ribonucleoside +relationship: RO:0004007 CHEBI:18254 ! has primary input or output ribonucleoside [Term] id: GO:0009132 @@ -51994,8 +51847,8 @@ def: "The chemical reactions and pathways involving a nucleoside diphosphate, a synonym: "nucleoside diphosphate metabolism" EXACT [] is_a: GO:0006793 ! phosphorus metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:57930 ! nucleoside 5'-diphosphate(3-) -relationship: has_primary_input_or_output CHEBI:57930 ! nucleoside 5'-diphosphate(3-) +intersection_of: RO:0004007 CHEBI:57930 ! has primary input or output nucleoside 5'-diphosphate(3-) +relationship: RO:0004007 CHEBI:57930 ! has primary input or output nucleoside 5'-diphosphate(3-) [Term] id: GO:0009133 @@ -52009,8 +51862,8 @@ synonym: "nucleoside diphosphate synthesis" EXACT [] is_a: GO:0009058 ! biosynthetic process is_a: GO:0009132 ! nucleoside diphosphate metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:57930 ! nucleoside 5'-diphosphate(3-) -relationship: has_primary_output CHEBI:57930 ! nucleoside 5'-diphosphate(3-) +intersection_of: RO:0004008 CHEBI:57930 ! has primary output nucleoside 5'-diphosphate(3-) +relationship: RO:0004008 CHEBI:57930 ! has primary output nucleoside 5'-diphosphate(3-) [Term] id: GO:0009134 @@ -52023,8 +51876,8 @@ synonym: "nucleoside diphosphate degradation" EXACT [] is_a: GO:0009056 ! catabolic process is_a: GO:0009132 ! nucleoside diphosphate metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:57930 ! nucleoside 5'-diphosphate(3-) -relationship: has_primary_input CHEBI:57930 ! nucleoside 5'-diphosphate(3-) +intersection_of: RO:0004009 CHEBI:57930 ! has primary input nucleoside 5'-diphosphate(3-) +relationship: RO:0004009 CHEBI:57930 ! has primary input nucleoside 5'-diphosphate(3-) [Term] id: GO:0009135 @@ -52034,8 +51887,8 @@ def: "The chemical reactions and pathways involving purine nucleoside diphosphat synonym: "purine nucleoside diphosphate metabolism" EXACT [] is_a: GO:0006753 ! nucleoside phosphate metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26391 ! purine nucleoside diphosphate -relationship: has_primary_input_or_output CHEBI:26391 ! purine nucleoside diphosphate +intersection_of: RO:0004007 CHEBI:26391 ! has primary input or output purine nucleoside diphosphate +relationship: RO:0004007 CHEBI:26391 ! has primary input or output purine nucleoside diphosphate [Term] id: GO:0009136 @@ -52049,8 +51902,8 @@ synonym: "purine nucleoside diphosphate synthesis" EXACT [] is_a: GO:0009135 ! purine nucleoside diphosphate metabolic process is_a: GO:1901293 ! nucleoside phosphate biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26391 ! purine nucleoside diphosphate -relationship: has_primary_output CHEBI:26391 ! purine nucleoside diphosphate +intersection_of: RO:0004008 CHEBI:26391 ! has primary output purine nucleoside diphosphate +relationship: RO:0004008 CHEBI:26391 ! has primary output purine nucleoside diphosphate [Term] id: GO:0009137 @@ -52063,8 +51916,8 @@ synonym: "purine nucleoside diphosphate degradation" EXACT [] is_a: GO:0009135 ! purine nucleoside diphosphate metabolic process is_a: GO:1901292 ! nucleoside phosphate catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:26391 ! purine nucleoside diphosphate -relationship: has_primary_input CHEBI:26391 ! purine nucleoside diphosphate +intersection_of: RO:0004009 CHEBI:26391 ! has primary input purine nucleoside diphosphate +relationship: RO:0004009 CHEBI:26391 ! has primary input purine nucleoside diphosphate [Term] id: GO:0009141 @@ -52074,8 +51927,8 @@ def: "The chemical reactions and pathways involving a nucleoside triphosphate, a synonym: "nucleoside triphosphate metabolism" EXACT [] is_a: GO:0006793 ! phosphorus metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:61557 ! nucleoside 5'-triphoshate(4-) -relationship: has_primary_input_or_output CHEBI:61557 ! nucleoside 5'-triphoshate(4-) +intersection_of: RO:0004007 CHEBI:61557 ! has primary input or output nucleoside 5'-triphoshate(4-) +relationship: RO:0004007 CHEBI:61557 ! has primary input or output nucleoside 5'-triphoshate(4-) [Term] id: GO:0009142 @@ -52089,8 +51942,8 @@ synonym: "nucleoside triphosphate synthesis" EXACT [] is_a: GO:0009058 ! biosynthetic process is_a: GO:0009141 ! nucleoside triphosphate metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:61557 ! nucleoside 5'-triphoshate(4-) -relationship: has_primary_output CHEBI:61557 ! nucleoside 5'-triphoshate(4-) +intersection_of: RO:0004008 CHEBI:61557 ! has primary output nucleoside 5'-triphoshate(4-) +relationship: RO:0004008 CHEBI:61557 ! has primary output nucleoside 5'-triphoshate(4-) [Term] id: GO:0009143 @@ -52103,8 +51956,8 @@ synonym: "nucleoside triphosphate degradation" EXACT [] is_a: GO:0009056 ! catabolic process is_a: GO:0009141 ! nucleoside triphosphate metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:61557 ! nucleoside 5'-triphoshate(4-) -relationship: has_primary_input CHEBI:61557 ! nucleoside 5'-triphoshate(4-) +intersection_of: RO:0004009 CHEBI:61557 ! has primary input nucleoside 5'-triphoshate(4-) +relationship: RO:0004009 CHEBI:61557 ! has primary input nucleoside 5'-triphoshate(4-) [Term] id: GO:0009144 @@ -52114,8 +51967,8 @@ def: "The chemical reactions and pathways involving purine nucleoside triphospha synonym: "purine nucleoside triphosphate metabolism" EXACT [] is_a: GO:0006753 ! nucleoside phosphate metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26393 ! purine nucleoside triphosphate -relationship: has_primary_input_or_output CHEBI:26393 ! purine nucleoside triphosphate +intersection_of: RO:0004007 CHEBI:26393 ! has primary input or output purine nucleoside triphosphate +relationship: RO:0004007 CHEBI:26393 ! has primary input or output purine nucleoside triphosphate [Term] id: GO:0009145 @@ -52129,8 +51982,8 @@ synonym: "purine nucleoside triphosphate synthesis" EXACT [] is_a: GO:0009144 ! purine nucleoside triphosphate metabolic process is_a: GO:1901293 ! nucleoside phosphate biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26393 ! purine nucleoside triphosphate -relationship: has_primary_output CHEBI:26393 ! purine nucleoside triphosphate +intersection_of: RO:0004008 CHEBI:26393 ! has primary output purine nucleoside triphosphate +relationship: RO:0004008 CHEBI:26393 ! has primary output purine nucleoside triphosphate [Term] id: GO:0009146 @@ -52143,8 +51996,8 @@ synonym: "purine nucleoside triphosphate degradation" EXACT [] is_a: GO:0009144 ! purine nucleoside triphosphate metabolic process is_a: GO:1901292 ! nucleoside phosphate catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:26393 ! purine nucleoside triphosphate -relationship: has_primary_input CHEBI:26393 ! purine nucleoside triphosphate +intersection_of: RO:0004009 CHEBI:26393 ! has primary input purine nucleoside triphosphate +relationship: RO:0004009 CHEBI:26393 ! has primary input purine nucleoside triphosphate [Term] id: GO:0009150 @@ -52155,8 +52008,8 @@ synonym: "purine ribonucleotide metabolism" EXACT [] is_a: GO:0006163 ! purine nucleotide metabolic process is_a: GO:0009259 ! ribonucleotide metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26400 ! purine ribonucleotide -relationship: has_primary_input_or_output CHEBI:26400 ! purine ribonucleotide +intersection_of: RO:0004007 CHEBI:26400 ! has primary input or output purine ribonucleotide +relationship: RO:0004007 CHEBI:26400 ! has primary input or output purine ribonucleotide [Term] id: GO:0009152 @@ -52171,8 +52024,8 @@ is_a: GO:0006164 ! purine nucleotide biosynthetic process is_a: GO:0009150 ! purine ribonucleotide metabolic process is_a: GO:0009260 ! ribonucleotide biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26400 ! purine ribonucleotide -relationship: has_primary_output CHEBI:26400 ! purine ribonucleotide +intersection_of: RO:0004008 CHEBI:26400 ! has primary output purine ribonucleotide +relationship: RO:0004008 CHEBI:26400 ! has primary output purine ribonucleotide [Term] id: GO:0009154 @@ -52186,8 +52039,8 @@ is_a: GO:0006195 ! purine nucleotide catabolic process is_a: GO:0009150 ! purine ribonucleotide metabolic process is_a: GO:0009261 ! ribonucleotide catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:26400 ! purine ribonucleotide -relationship: has_primary_input CHEBI:26400 ! purine ribonucleotide +intersection_of: RO:0004009 CHEBI:26400 ! has primary input purine ribonucleotide +relationship: RO:0004009 CHEBI:26400 ! has primary input purine ribonucleotide [Term] id: GO:0009163 @@ -52200,11 +52053,10 @@ synonym: "nucleoside formation" EXACT [] synonym: "nucleoside synthesis" EXACT [] is_a: GO:0009116 ! nucleoside metabolic process is_a: GO:0034404 ! nucleobase-containing small molecule biosynthetic process -is_a: GO:1901566 ! organonitrogen compound biosynthetic process is_a: GO:1901659 ! glycosyl compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:33838 ! nucleoside -relationship: has_primary_output CHEBI:33838 ! nucleoside +intersection_of: RO:0004008 CHEBI:33838 ! has primary output nucleoside +relationship: RO:0004008 CHEBI:33838 ! has primary output nucleoside [Term] id: GO:0009164 @@ -52216,11 +52068,10 @@ synonym: "nucleoside catabolism" EXACT [] synonym: "nucleoside degradation" EXACT [] is_a: GO:0009116 ! nucleoside metabolic process is_a: GO:0034656 ! nucleobase-containing small molecule catabolic process -is_a: GO:1901565 ! organonitrogen compound catabolic process is_a: GO:1901658 ! glycosyl compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:33838 ! nucleoside -relationship: has_primary_input CHEBI:33838 ! nucleoside +intersection_of: RO:0004009 CHEBI:33838 ! has primary input nucleoside +relationship: RO:0004009 CHEBI:33838 ! has primary input nucleoside [Term] id: GO:0009165 @@ -52234,8 +52085,8 @@ synonym: "nucleotide synthesis" EXACT [] is_a: GO:0009117 ! nucleotide metabolic process is_a: GO:1901293 ! nucleoside phosphate biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:36976 ! nucleotide -relationship: has_primary_output CHEBI:36976 ! nucleotide +intersection_of: RO:0004008 CHEBI:36976 ! has primary output nucleotide +relationship: RO:0004008 CHEBI:36976 ! has primary output nucleotide [Term] id: GO:0009166 @@ -52248,8 +52099,8 @@ synonym: "nucleotide degradation" EXACT [] is_a: GO:0009117 ! nucleotide metabolic process is_a: GO:1901292 ! nucleoside phosphate catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:36976 ! nucleotide -relationship: has_primary_input CHEBI:36976 ! nucleotide +intersection_of: RO:0004009 CHEBI:36976 ! has primary input nucleotide +relationship: RO:0004009 CHEBI:36976 ! has primary input nucleotide [Term] id: GO:0009179 @@ -52260,8 +52111,8 @@ synonym: "purine ribonucleoside diphosphate metabolism" EXACT [] is_a: GO:0009135 ! purine nucleoside diphosphate metabolic process is_a: GO:0009185 ! ribonucleoside diphosphate metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26396 ! purine ribonucleoside diphosphate -relationship: has_primary_input_or_output CHEBI:26396 ! purine ribonucleoside diphosphate +intersection_of: RO:0004007 CHEBI:26396 ! has primary input or output purine ribonucleoside diphosphate +relationship: RO:0004007 CHEBI:26396 ! has primary input or output purine ribonucleoside diphosphate [Term] id: GO:0009180 @@ -52276,8 +52127,8 @@ is_a: GO:0009136 ! purine nucleoside diphosphate biosynthetic process is_a: GO:0009179 ! purine ribonucleoside diphosphate metabolic process is_a: GO:0009188 ! ribonucleoside diphosphate biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26396 ! purine ribonucleoside diphosphate -relationship: has_primary_output CHEBI:26396 ! purine ribonucleoside diphosphate +intersection_of: RO:0004008 CHEBI:26396 ! has primary output purine ribonucleoside diphosphate +relationship: RO:0004008 CHEBI:26396 ! has primary output purine ribonucleoside diphosphate [Term] id: GO:0009181 @@ -52291,8 +52142,8 @@ is_a: GO:0009137 ! purine nucleoside diphosphate catabolic process is_a: GO:0009179 ! purine ribonucleoside diphosphate metabolic process is_a: GO:0009191 ! ribonucleoside diphosphate catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:26396 ! purine ribonucleoside diphosphate -relationship: has_primary_input CHEBI:26396 ! purine ribonucleoside diphosphate +intersection_of: RO:0004009 CHEBI:26396 ! has primary input purine ribonucleoside diphosphate +relationship: RO:0004009 CHEBI:26396 ! has primary input purine ribonucleoside diphosphate [Term] id: GO:0009185 @@ -52302,8 +52153,8 @@ def: "The chemical reactions and pathways involving a ribonucleoside diphosphate synonym: "ribonucleoside diphosphate metabolism" EXACT [] is_a: GO:0006753 ! nucleoside phosphate metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:17668 ! ribonucleoside diphosphate -relationship: has_primary_input_or_output CHEBI:17668 ! ribonucleoside diphosphate +intersection_of: RO:0004007 CHEBI:17668 ! has primary input or output ribonucleoside diphosphate +relationship: RO:0004007 CHEBI:17668 ! has primary input or output ribonucleoside diphosphate [Term] id: GO:0009188 @@ -52317,8 +52168,8 @@ synonym: "ribonucleoside diphosphate synthesis" EXACT [] is_a: GO:0009185 ! ribonucleoside diphosphate metabolic process is_a: GO:1901293 ! nucleoside phosphate biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:17668 ! ribonucleoside diphosphate -relationship: has_primary_output CHEBI:17668 ! ribonucleoside diphosphate +intersection_of: RO:0004008 CHEBI:17668 ! has primary output ribonucleoside diphosphate +relationship: RO:0004008 CHEBI:17668 ! has primary output ribonucleoside diphosphate [Term] id: GO:0009191 @@ -52331,8 +52182,8 @@ synonym: "ribonucleoside diphosphate degradation" EXACT [] is_a: GO:0009185 ! ribonucleoside diphosphate metabolic process is_a: GO:1901292 ! nucleoside phosphate catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:17668 ! ribonucleoside diphosphate -relationship: has_primary_input CHEBI:17668 ! ribonucleoside diphosphate +intersection_of: RO:0004009 CHEBI:17668 ! has primary input ribonucleoside diphosphate +relationship: RO:0004009 CHEBI:17668 ! has primary input ribonucleoside diphosphate [Term] id: GO:0009199 @@ -52342,8 +52193,8 @@ def: "The chemical reactions and pathways involving a ribonucleoside triphosphat synonym: "ribonucleoside triphosphate metabolism" EXACT [] is_a: GO:0006753 ! nucleoside phosphate metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:17972 ! ribonucleoside triphosphate -relationship: has_primary_input_or_output CHEBI:17972 ! ribonucleoside triphosphate +intersection_of: RO:0004007 CHEBI:17972 ! has primary input or output ribonucleoside triphosphate +relationship: RO:0004007 CHEBI:17972 ! has primary input or output ribonucleoside triphosphate [Term] id: GO:0009201 @@ -52357,8 +52208,8 @@ synonym: "ribonucleoside triphosphate synthesis" EXACT [] is_a: GO:0009199 ! ribonucleoside triphosphate metabolic process is_a: GO:1901293 ! nucleoside phosphate biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:17972 ! ribonucleoside triphosphate -relationship: has_primary_output CHEBI:17972 ! ribonucleoside triphosphate +intersection_of: RO:0004008 CHEBI:17972 ! has primary output ribonucleoside triphosphate +relationship: RO:0004008 CHEBI:17972 ! has primary output ribonucleoside triphosphate [Term] id: GO:0009203 @@ -52371,8 +52222,8 @@ synonym: "ribonucleoside triphosphate degradation" EXACT [] is_a: GO:0009199 ! ribonucleoside triphosphate metabolic process is_a: GO:1901292 ! nucleoside phosphate catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:17972 ! ribonucleoside triphosphate -relationship: has_primary_input CHEBI:17972 ! ribonucleoside triphosphate +intersection_of: RO:0004009 CHEBI:17972 ! has primary input ribonucleoside triphosphate +relationship: RO:0004009 CHEBI:17972 ! has primary input ribonucleoside triphosphate [Term] id: GO:0009205 @@ -52383,8 +52234,8 @@ synonym: "purine ribonucleoside triphosphate metabolism" EXACT [] is_a: GO:0009144 ! purine nucleoside triphosphate metabolic process is_a: GO:0009199 ! ribonucleoside triphosphate metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26398 ! purine ribonucleoside triphosphate -relationship: has_primary_input_or_output CHEBI:26398 ! purine ribonucleoside triphosphate +intersection_of: RO:0004007 CHEBI:26398 ! has primary input or output purine ribonucleoside triphosphate +relationship: RO:0004007 CHEBI:26398 ! has primary input or output purine ribonucleoside triphosphate [Term] id: GO:0009206 @@ -52399,8 +52250,8 @@ is_a: GO:0009145 ! purine nucleoside triphosphate biosynthetic process is_a: GO:0009201 ! ribonucleoside triphosphate biosynthetic process is_a: GO:0009205 ! purine ribonucleoside triphosphate metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26398 ! purine ribonucleoside triphosphate -relationship: has_primary_output CHEBI:26398 ! purine ribonucleoside triphosphate +intersection_of: RO:0004008 CHEBI:26398 ! has primary output purine ribonucleoside triphosphate +relationship: RO:0004008 CHEBI:26398 ! has primary output purine ribonucleoside triphosphate [Term] id: GO:0009207 @@ -52414,8 +52265,8 @@ is_a: GO:0009146 ! purine nucleoside triphosphate catabolic process is_a: GO:0009203 ! ribonucleoside triphosphate catabolic process is_a: GO:0009205 ! purine ribonucleoside triphosphate metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:26398 ! purine ribonucleoside triphosphate -relationship: has_primary_input CHEBI:26398 ! purine ribonucleoside triphosphate +intersection_of: RO:0004009 CHEBI:26398 ! has primary input purine ribonucleoside triphosphate +relationship: RO:0004009 CHEBI:26398 ! has primary input purine ribonucleoside triphosphate [Term] id: GO:0009247 @@ -52431,8 +52282,9 @@ is_a: GO:0006664 ! glycolipid metabolic process is_a: GO:0046467 ! membrane lipid biosynthetic process is_a: GO:1901137 ! carbohydrate derivative biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:33563 ! glycolipid -relationship: has_primary_output CHEBI:33563 ! glycolipid +intersection_of: RO:0004008 CHEBI:33563 ! has primary output glycolipid +relationship: RO:0004008 CHEBI:33563 ! has primary output glycolipid +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28573" xsd:anyURI [Term] id: GO:0009250 @@ -52446,8 +52298,8 @@ synonym: "glucan synthesis" EXACT [] is_a: GO:0000271 ! polysaccharide biosynthetic process is_a: GO:0044042 ! glucan metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:37163 ! glucan -relationship: has_primary_output CHEBI:37163 ! glucan +intersection_of: RO:0004008 CHEBI:37163 ! has primary output glucan +relationship: RO:0004008 CHEBI:37163 ! has primary output glucan [Term] id: GO:0009251 @@ -52460,8 +52312,8 @@ synonym: "glucan degradation" EXACT [] is_a: GO:0000272 ! polysaccharide catabolic process is_a: GO:0044042 ! glucan metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:37163 ! glucan -relationship: has_primary_input CHEBI:37163 ! glucan +intersection_of: RO:0004009 CHEBI:37163 ! has primary input glucan +relationship: RO:0004009 CHEBI:37163 ! has primary input glucan [Term] id: GO:0009259 @@ -52473,8 +52325,8 @@ synonym: "ribonucleotide metabolism" EXACT [] is_a: GO:0009117 ! nucleotide metabolic process is_a: GO:0019693 ! ribose phosphate metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26561 ! ribonucleotide -relationship: has_primary_input_or_output CHEBI:26561 ! ribonucleotide +intersection_of: RO:0004007 CHEBI:26561 ! has primary input or output ribonucleotide +relationship: RO:0004007 CHEBI:26561 ! has primary input or output ribonucleotide [Term] id: GO:0009260 @@ -52489,8 +52341,8 @@ is_a: GO:0009165 ! nucleotide biosynthetic process is_a: GO:0009259 ! ribonucleotide metabolic process is_a: GO:0046390 ! ribose phosphate biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26561 ! ribonucleotide -relationship: has_primary_output CHEBI:26561 ! ribonucleotide +intersection_of: RO:0004008 CHEBI:26561 ! has primary output ribonucleotide +relationship: RO:0004008 CHEBI:26561 ! has primary output ribonucleotide [Term] id: GO:0009261 @@ -52504,8 +52356,8 @@ is_a: GO:0009166 ! nucleotide catabolic process is_a: GO:0009259 ! ribonucleotide metabolic process is_a: GO:1901136 ! carbohydrate derivative catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:26561 ! ribonucleotide -relationship: has_primary_input CHEBI:26561 ! ribonucleotide +intersection_of: RO:0004009 CHEBI:26561 ! has primary input ribonucleotide +relationship: RO:0004009 CHEBI:26561 ! has primary input ribonucleotide [Term] id: GO:0009266 @@ -52530,8 +52382,8 @@ is_a: GO:0032940 ! secretion by cell is_a: GO:0035592 ! establishment of protein localization to extracellular region is_a: GO:0071692 ! protein localization to extracellular region intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input PR:000000001 ! protein -relationship: has_primary_input PR:000000001 ! protein +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: RO:0004009 PR:000000001 ! has primary input protein [Term] id: GO:0009308 @@ -52543,10 +52395,10 @@ subset: goslim_chembl subset: goslim_pir synonym: "amine metabolism" EXACT [] synonym: "cellular amine metabolic process" EXACT [] -is_a: GO:1901564 ! organonitrogen compound metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:32952 ! amine -relationship: has_primary_input_or_output CHEBI:32952 ! amine +intersection_of: RO:0004007 CHEBI:32952 ! has primary input or output amine +relationship: RO:0004007 CHEBI:32952 ! has primary input or output amine created_by: jl creation_date: 2009-07-15T11:55:44Z @@ -52559,11 +52411,11 @@ synonym: "amine anabolism" EXACT [] synonym: "amine biosynthesis" EXACT [] synonym: "amine formation" EXACT [] synonym: "amine synthesis" EXACT [] +is_a: GO:0009058 ! biosynthetic process is_a: GO:0009308 ! amine metabolic process -is_a: GO:1901566 ! organonitrogen compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:32952 ! amine -relationship: has_primary_output CHEBI:32952 ! amine +intersection_of: RO:0004008 CHEBI:32952 ! has primary output amine +relationship: RO:0004008 CHEBI:32952 ! has primary output amine [Term] id: GO:0009310 @@ -52573,11 +52425,11 @@ def: "The chemical reactions and pathways resulting in the breakdown of any orga synonym: "amine breakdown" EXACT [] synonym: "amine catabolism" EXACT [] synonym: "amine degradation" EXACT [] +is_a: GO:0009056 ! catabolic process is_a: GO:0009308 ! amine metabolic process -is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:32952 ! amine -relationship: has_primary_input CHEBI:32952 ! amine +intersection_of: RO:0004009 CHEBI:32952 ! has primary input amine +relationship: RO:0004009 CHEBI:32952 ! has primary input amine [Term] id: GO:0009314 @@ -52598,11 +52450,12 @@ synonym: "phospholipid breakdown" EXACT [] synonym: "phospholipid catabolism" EXACT [] synonym: "phospholipid degradation" EXACT [] is_a: GO:0006644 ! phospholipid metabolic process -is_a: GO:0044242 ! cellular lipid catabolic process +is_a: GO:0016042 ! lipid catabolic process is_a: GO:0046434 ! organophosphate catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:16247 ! phospholipid -relationship: has_primary_input CHEBI:16247 ! phospholipid +intersection_of: RO:0004009 CHEBI:16247 ! has primary input phospholipid +relationship: RO:0004009 CHEBI:16247 ! has primary input phospholipid +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0009414 @@ -52626,8 +52479,8 @@ is_a: GO:0001101 ! response to acid chemical is_a: GO:0009628 ! response to abiotic stimulus is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:15377 ! water -relationship: has_primary_input CHEBI:15377 ! water +intersection_of: RO:0004009 CHEBI:15377 ! has primary input water +relationship: RO:0004009 CHEBI:15377 ! has primary input water [Term] id: GO:0009416 @@ -52637,8 +52490,8 @@ def: "Any process that results in a change in state or activity of a cell or an subset: goslim_plant is_a: GO:0009314 ! response to radiation intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:30212 ! photon -relationship: has_primary_input CHEBI:30212 ! photon +intersection_of: RO:0004009 CHEBI:30212 ! has primary input photon +relationship: RO:0004009 CHEBI:30212 ! has primary input photon [Term] id: GO:0009448 @@ -52656,8 +52509,8 @@ synonym: "gamma-aminobutyric acid metabolism" EXACT [] is_a: GO:0006520 ! amino acid metabolic process is_a: GO:0032787 ! monocarboxylic acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:59888 ! gamma-aminobutyric acid zwitterion -relationship: has_primary_input_or_output CHEBI:59888 ! gamma-aminobutyric acid zwitterion +intersection_of: RO:0004007 CHEBI:59888 ! has primary input or output gamma-aminobutyric acid zwitterion +relationship: RO:0004007 CHEBI:59888 ! has primary input or output gamma-aminobutyric acid zwitterion [Term] id: GO:0009449 @@ -52678,8 +52531,8 @@ synonym: "gamma-aminobutyric acid synthesis" EXACT [] is_a: GO:0008652 ! amino acid biosynthetic process is_a: GO:0009448 ! gamma-aminobutyric acid metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:59888 ! gamma-aminobutyric acid zwitterion -relationship: has_primary_output CHEBI:59888 ! gamma-aminobutyric acid zwitterion +intersection_of: RO:0004008 CHEBI:59888 ! has primary output gamma-aminobutyric acid zwitterion +relationship: RO:0004008 CHEBI:59888 ! has primary output gamma-aminobutyric acid zwitterion [Term] id: GO:0009450 @@ -52700,8 +52553,8 @@ xref: MetaCyc:4AMINOBUTMETAB-PWY is_a: GO:0009063 ! amino acid catabolic process is_a: GO:0009448 ! gamma-aminobutyric acid metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:59888 ! gamma-aminobutyric acid zwitterion -relationship: has_primary_input CHEBI:59888 ! gamma-aminobutyric acid zwitterion +intersection_of: RO:0004009 CHEBI:59888 ! has primary input gamma-aminobutyric acid zwitterion +relationship: RO:0004009 CHEBI:59888 ! has primary input gamma-aminobutyric acid zwitterion [Term] id: GO:0009566 @@ -52712,11 +52565,11 @@ synonym: "syngamy" EXACT [] xref: Wikipedia:Fertilisation is_a: GO:0022414 ! reproductive process intersection_of: GO:0022414 ! reproductive process -intersection_of: results_in_formation_of_anatomical_entity CL:0010017 ! zygote -intersection_of: results_in_fusion_of GO:0043073 ! germ cell nucleus +intersection_of: RO:0002297 CL:0010017 ! results in formation of anatomical entity zygote +intersection_of: RO:0012008 GO:0043073 ! results in fusion of germ cell nucleus relationship: part_of GO:0019953 ! sexual reproduction -relationship: results_in_formation_of_anatomical_entity CL:0010017 ! zygote -relationship: results_in_fusion_of GO:0043073 ! germ cell nucleus +relationship: RO:0002297 CL:0010017 ! results in formation of anatomical entity zygote +relationship: RO:0012008 GO:0043073 ! results in fusion of germ cell nucleus property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20176" xsd:anyURI [Term] @@ -52832,8 +52685,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to bacteria" EXACT [] is_a: GO:0051707 ! response to other organism intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input NCBITaxon:2 ! Bacteria -relationship: has_primary_input NCBITaxon:2 ! Bacteria +intersection_of: RO:0004009 NCBITaxon:2 ! has primary input Bacteria +relationship: RO:0004009 NCBITaxon:2 ! has primary input Bacteria [Term] id: GO:0009620 @@ -52844,8 +52697,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to fungi" EXACT [] is_a: GO:0051707 ! response to other organism intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input NCBITaxon:4751 ! Fungi -relationship: has_primary_input NCBITaxon:4751 ! Fungi +intersection_of: RO:0004009 NCBITaxon:4751 ! has primary input Fungi +relationship: RO:0004009 NCBITaxon:4751 ! has primary input Fungi [Term] id: GO:0009628 @@ -52902,8 +52755,8 @@ synonym: "catechol metabolic process" RELATED [] synonym: "catechol metabolism" RELATED [] is_a: GO:0018958 ! phenol-containing compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:33566 ! catechols -relationship: has_primary_input_or_output CHEBI:33566 ! catechols +intersection_of: RO:0004007 CHEBI:33566 ! has primary input or output catechols +relationship: RO:0004007 CHEBI:33566 ! has primary input or output catechols [Term] id: GO:0009713 @@ -52918,8 +52771,8 @@ synonym: "catechol synthesis" RELATED [] is_a: GO:0009712 ! catechol-containing compound metabolic process is_a: GO:0046189 ! phenol-containing compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:33566 ! catechols -relationship: has_primary_output CHEBI:33566 ! catechols +intersection_of: RO:0004008 CHEBI:33566 ! has primary output catechols +relationship: RO:0004008 CHEBI:33566 ! has primary output catechols [Term] id: GO:0009719 @@ -52950,8 +52803,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to carbohydrate stimulus" EXACT [GOC:dos] is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:16646 ! carbohydrate -relationship: has_primary_input CHEBI:16646 ! carbohydrate +intersection_of: RO:0004009 CHEBI:16646 ! has primary input carbohydrate +relationship: RO:0004009 CHEBI:16646 ! has primary input carbohydrate [Term] id: GO:0009746 @@ -52961,8 +52814,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to hexose stimulus" EXACT [GOC:dos] is_a: GO:0034284 ! response to monosaccharide intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:18133 ! hexose -relationship: has_primary_input CHEBI:18133 ! hexose +intersection_of: RO:0004009 CHEBI:18133 ! has primary input hexose +relationship: RO:0004009 CHEBI:18133 ! has primary input hexose [Term] id: GO:0009749 @@ -52972,8 +52825,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to glucose stimulus" EXACT [GOC:dos] is_a: GO:0009746 ! response to hexose intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:4167 ! D-glucopyranose -relationship: has_primary_input CHEBI:4167 ! D-glucopyranose +intersection_of: RO:0004009 CHEBI:4167 ! has primary input D-glucopyranose +relationship: RO:0004009 CHEBI:4167 ! has primary input D-glucopyranose [Term] id: GO:0009755 @@ -52992,8 +52845,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of asymmetric cell division." [GOC:lr] is_a: GO:0051302 ! regulation of cell division intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008356 ! asymmetric cell division -relationship: regulates GO:0008356 ! asymmetric cell division +intersection_of: RO:0002211 GO:0008356 ! regulates (processual) asymmetric cell division +relationship: RO:0002211 GO:0008356 ! regulates (processual) asymmetric cell division [Term] id: GO:0009790 @@ -53010,8 +52863,8 @@ synonym: "embryonal development" EXACT [] xref: Wikipedia:Embryogenesis is_a: GO:0007275 ! multicellular organism development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000922 ! embryo -relationship: results_in_development_of UBERON:0000922 ! embryo +intersection_of: RO:0002296 UBERON:0000922 ! results in development of embryo +relationship: RO:0002296 UBERON:0000922 ! results in development of embryo [Term] id: GO:0009791 @@ -53030,7 +52883,7 @@ def: "The process whose specific outcome is the progression of an embryo over ti synonym: "embryogenesis" BROAD [] is_a: GO:0009790 ! embryo development relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa [Term] id: GO:0009798 @@ -53047,10 +52900,10 @@ namespace: biological_process def: "The chemical reactions and pathways involving alkaloids, nitrogen containing natural products which are not otherwise classified as peptides, nonprotein amino acids, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones or primary metabolites (such as purine or pyrimidine bases)." [GOC:lr, ISBN:0122146743] subset: goslim_chembl synonym: "alkaloid metabolism" EXACT [] -is_a: GO:1901564 ! organonitrogen compound metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:22315 ! alkaloid -relationship: has_primary_input_or_output CHEBI:22315 ! alkaloid +intersection_of: RO:0004007 CHEBI:22315 ! has primary input or output alkaloid +relationship: RO:0004007 CHEBI:22315 ! has primary input or output alkaloid [Term] id: GO:0009821 @@ -53061,13 +52914,11 @@ synonym: "alkaloid anabolism" EXACT [] synonym: "alkaloid biosynthesis" EXACT [] synonym: "alkaloid formation" EXACT [] synonym: "alkaloid synthesis" EXACT [] -xref: UM-BBD_enzymeID:e0711 is_a: GO:0009820 ! alkaloid metabolic process is_a: GO:0044550 ! secondary metabolite biosynthetic process -is_a: GO:1901566 ! organonitrogen compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:22315 ! alkaloid -relationship: has_primary_output CHEBI:22315 ! alkaloid +intersection_of: RO:0004008 CHEBI:22315 ! has primary output alkaloid +relationship: RO:0004008 CHEBI:22315 ! has primary output alkaloid [Term] id: GO:0009822 @@ -53077,11 +52928,11 @@ def: "The chemical reactions and pathways resulting in the breakdown of alkaloid synonym: "alkaloid breakdown" EXACT [] synonym: "alkaloid catabolism" EXACT [] synonym: "alkaloid degradation" EXACT [] +is_a: GO:0009056 ! catabolic process is_a: GO:0009820 ! alkaloid metabolic process -is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:22315 ! alkaloid -relationship: has_primary_input CHEBI:22315 ! alkaloid +intersection_of: RO:0004009 CHEBI:22315 ! has primary input alkaloid +relationship: RO:0004009 CHEBI:22315 ! has primary input alkaloid [Term] id: GO:0009880 @@ -53111,11 +52962,11 @@ def: "Morphogenesis of an animal organ. An organ is defined as a tissue or set o synonym: "histogenesis and organogenesis" BROAD [] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000062 ! organ +intersection_of: RO:0002298 UBERON:0000062 ! results in morphogenesis of organ relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: part_of GO:0048513 ! animal organ development -relationship: results_in_morphogenesis_of UBERON:0000062 ! organ +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa +relationship: RO:0002298 UBERON:0000062 ! results in morphogenesis of organ [Term] id: GO:0009888 @@ -53127,15 +52978,15 @@ synonym: "histogenesis and organogenesis" BROAD [] xref: Wikipedia:Histogenesis is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000479 ! tissue +intersection_of: RO:0002296 UBERON:0000479 ! results in development of tissue relationship: in_taxon NCBITaxon:2759 {all_only="true"} ! Eukaryota relationship: never_in_taxon NCBITaxon:147554 ! Schizosaccharomycetes relationship: never_in_taxon NCBITaxon:33630 ! Alveolata relationship: never_in_taxon NCBITaxon:33682 ! Euglenozoa relationship: never_in_taxon NCBITaxon:38254 ! Glaucocystophyceae relationship: never_in_taxon NCBITaxon:4891 ! Saccharomycetes -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota -relationship: results_in_development_of UBERON:0000479 ! tissue +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota +relationship: RO:0002296 UBERON:0000479 ! results in development of tissue [Term] id: GO:0009889 @@ -53148,8 +52999,8 @@ synonym: "regulation of formation" EXACT [] synonym: "regulation of synthesis" EXACT [] is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009058 ! biosynthetic process -relationship: regulates GO:0009058 ! biosynthetic process +intersection_of: RO:0002211 GO:0009058 ! regulates (processual) biosynthetic process +relationship: RO:0002211 GO:0009058 ! regulates (processual) biosynthetic process [Term] id: GO:0009890 @@ -53167,8 +53018,8 @@ synonym: "negative regulation of synthesis" EXACT [] is_a: GO:0009889 ! regulation of biosynthetic process is_a: GO:0009892 ! negative regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009058 ! biosynthetic process -relationship: negatively_regulates GO:0009058 ! biosynthetic process +intersection_of: RO:0002212 GO:0009058 ! negatively regulates biosynthetic process +relationship: RO:0002212 GO:0009058 ! negatively regulates biosynthetic process [Term] id: GO:0009891 @@ -53187,8 +53038,8 @@ synonym: "upregulation of biosynthetic process" EXACT [] is_a: GO:0009889 ! regulation of biosynthetic process is_a: GO:0009893 ! positive regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009058 ! biosynthetic process -relationship: positively_regulates GO:0009058 ! biosynthetic process +intersection_of: RO:0002213 GO:0009058 ! positively regulates biosynthetic process +relationship: RO:0002213 GO:0009058 ! positively regulates biosynthetic process [Term] id: GO:0009892 @@ -53205,10 +53056,10 @@ synonym: "negative regulation of metabolism" EXACT [] synonym: "negative regulation of multicellular organismal metabolic process" NARROW [] synonym: "negative regulation of organismal metabolism" EXACT [] is_a: GO:0019222 ! regulation of metabolic process -is_a: GO:0048519 ! negative regulation of biological process +is_a: GO:0048523 ! negative regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008152 ! metabolic process -relationship: negatively_regulates GO:0008152 ! metabolic process +intersection_of: RO:0002212 GO:0008152 ! negatively regulates metabolic process +relationship: RO:0002212 GO:0008152 ! negatively regulates metabolic process [Term] id: GO:0009893 @@ -53227,10 +53078,10 @@ synonym: "up-regulation of metabolic process" EXACT [] synonym: "up-regulation of organismal metabolic process" NARROW [] synonym: "upregulation of metabolic process" EXACT [] is_a: GO:0019222 ! regulation of metabolic process -is_a: GO:0048518 ! positive regulation of biological process +is_a: GO:0048522 ! positive regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008152 ! metabolic process -relationship: positively_regulates GO:0008152 ! metabolic process +intersection_of: RO:0002213 GO:0008152 ! positively regulates metabolic process +relationship: RO:0002213 GO:0008152 ! positively regulates metabolic process [Term] id: GO:0009894 @@ -53242,8 +53093,8 @@ synonym: "regulation of catabolism" EXACT [] synonym: "regulation of degradation" EXACT [] is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009056 ! catabolic process -relationship: regulates GO:0009056 ! catabolic process +intersection_of: RO:0002211 GO:0009056 ! regulates (processual) catabolic process +relationship: RO:0002211 GO:0009056 ! regulates (processual) catabolic process [Term] id: GO:0009895 @@ -53260,8 +53111,8 @@ synonym: "negative regulation of degradation" EXACT [] is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0009894 ! regulation of catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009056 ! catabolic process -relationship: negatively_regulates GO:0009056 ! catabolic process +intersection_of: RO:0002212 GO:0009056 ! negatively regulates catabolic process +relationship: RO:0002212 GO:0009056 ! negatively regulates catabolic process [Term] id: GO:0009896 @@ -53279,8 +53130,8 @@ synonym: "upregulation of catabolic process" EXACT [] is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0009894 ! regulation of catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009056 ! catabolic process -relationship: positively_regulates GO:0009056 ! catabolic process +intersection_of: RO:0002213 GO:0009056 ! positively regulates catabolic process +relationship: RO:0002213 GO:0009056 ! positively regulates catabolic process [Term] id: GO:0009913 @@ -53291,9 +53142,9 @@ def: "The process in which a relatively unspecialized cell acquires specialized synonym: "hypodermal cell differentiation" RELATED [GOC:kmv, GOC:rk] is_a: GO:0030855 ! epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000362 ! epidermal cell +intersection_of: RO:0002315 CL:0000362 ! results in acquisition of features of epidermal cell relationship: part_of GO:0008544 ! epidermis development -relationship: results_in_acquisition_of_features_of CL:0000362 ! epidermal cell +relationship: RO:0002315 CL:0000362 ! results in acquisition of features of epidermal cell [Term] id: GO:0009914 @@ -53333,8 +53184,8 @@ is_a: GO:0010646 ! regulation of cell communication is_a: GO:0023051 ! regulation of signaling is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007165 ! signal transduction -relationship: regulates GO:0007165 ! signal transduction +intersection_of: RO:0002211 GO:0007165 ! regulates (processual) signal transduction +relationship: RO:0002211 GO:0007165 ! regulates (processual) signal transduction [Term] id: GO:0009967 @@ -53354,8 +53205,8 @@ is_a: GO:0010647 ! positive regulation of cell communication is_a: GO:0023056 ! positive regulation of signaling is_a: GO:0048584 ! positive regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007165 ! signal transduction -relationship: positively_regulates GO:0007165 ! signal transduction +intersection_of: RO:0002213 GO:0007165 ! positively regulates signal transduction +relationship: RO:0002213 GO:0007165 ! positively regulates signal transduction [Term] id: GO:0009968 @@ -53374,8 +53225,8 @@ is_a: GO:0010648 ! negative regulation of cell communication is_a: GO:0023057 ! negative regulation of signaling is_a: GO:0048585 ! negative regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007165 ! signal transduction -relationship: negatively_regulates GO:0007165 ! signal transduction +intersection_of: RO:0002212 GO:0007165 ! negatively regulates signal transduction +relationship: RO:0002212 GO:0007165 ! negatively regulates signal transduction [Term] id: GO:0009977 @@ -53390,10 +53241,10 @@ synonym: "twin-arginine targeting transmembrane transporter activity" EXACT [] is_a: GO:0008320 ! protein transmembrane transporter activity is_a: GO:0015291 ! secondary active transmembrane transporter activity intersection_of: GO:0015291 ! secondary active transmembrane transporter activity -intersection_of: has_primary_input PR:000000001 ! protein -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input PR:000000001 ! protein -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 PR:000000001 ! has primary input protein [Term] id: GO:0009987 @@ -53425,8 +53276,8 @@ synonym: "cellular water homeostasis" EXACT [] is_a: GO:0006884 ! cell volume homeostasis is_a: GO:0055082 ! intracellular chemical homeostasis intersection_of: GO:0019725 ! cellular homeostasis -intersection_of: regulates_levels_of CHEBI:15377 ! water -relationship: regulates_levels_of CHEBI:15377 ! water +intersection_of: RO:0002332 CHEBI:15377 ! regulates levels of water +relationship: RO:0002332 CHEBI:15377 ! regulates levels of water [Term] id: GO:0009994 @@ -53437,9 +53288,9 @@ synonym: "oocyte cell differentiation" EXACT [] is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000023 ! oocyte +intersection_of: RO:0002315 CL:0000023 ! results in acquisition of features of oocyte relationship: part_of GO:0048477 ! oogenesis -relationship: results_in_acquisition_of_features_of CL:0000023 ! oocyte +relationship: RO:0002315 CL:0000023 ! results in acquisition of features of oocyte [Term] id: GO:0010001 @@ -53452,11 +53303,11 @@ synonym: "glia cell differentiation" EXACT [] synonym: "neuroglia differentiation" EXACT [] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000125 ! glial cell +intersection_of: RO:0002315 CL:0000125 ! results in acquisition of features of glial cell relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa relationship: part_of GO:0042063 ! gliogenesis -relationship: results_in_acquisition_of_features_of CL:0000125 ! glial cell +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0002315 CL:0000125 ! results in acquisition of features of glial cell [Term] id: GO:0010002 @@ -53469,8 +53320,8 @@ synonym: "cardiomyocyte generation" RELATED [] is_a: GO:0035051 ! cardiocyte differentiation is_a: GO:0048863 ! stem cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002664 ! cardioblast -relationship: results_in_acquisition_of_features_of CL:0002664 ! cardioblast +intersection_of: RO:0002315 CL:0002664 ! results in acquisition of features of cardioblast +relationship: RO:0002315 CL:0002664 ! results in acquisition of features of cardioblast [Term] id: GO:0010004 @@ -53498,8 +53349,8 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acetate stimulus." [GOC:sm] is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:30089 ! acetate -relationship: has_primary_input CHEBI:30089 ! acetate +intersection_of: RO:0004009 CHEBI:30089 ! has primary input acetate +relationship: RO:0004009 CHEBI:30089 ! has primary input acetate [Term] id: GO:0010037 @@ -53508,8 +53359,8 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbon dioxide (CO2) stimulus." [GOC:sm] is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:16526 ! carbon dioxide -relationship: has_primary_input CHEBI:16526 ! carbon dioxide +intersection_of: RO:0004009 CHEBI:16526 ! has primary input carbon dioxide +relationship: RO:0004009 CHEBI:16526 ! has primary input carbon dioxide [Term] id: GO:0010038 @@ -53521,8 +53372,8 @@ synonym: "response to heavy metal" NARROW [] synonym: "response to metal" EXACT [] is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:25213 ! metal cation -relationship: has_primary_input CHEBI:25213 ! metal cation +intersection_of: RO:0004009 CHEBI:25213 ! has primary input metal cation +relationship: RO:0004009 CHEBI:25213 ! has primary input metal cation [Term] id: GO:0010039 @@ -53532,8 +53383,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to iron" EXACT [] is_a: GO:0010038 ! response to metal ion intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:24875 ! iron cation -relationship: has_primary_input CHEBI:24875 ! iron cation +intersection_of: RO:0004009 CHEBI:24875 ! has primary input iron cation +relationship: RO:0004009 CHEBI:24875 ! has primary input iron cation [Term] id: GO:0010070 @@ -53543,8 +53394,8 @@ def: "The division of the zygote into two daughter cells that will adopt develop synonym: "zygote asymmetric cytokinesis" RELATED [] is_a: GO:0008356 ! asymmetric cell division intersection_of: GO:0008356 ! asymmetric cell division -intersection_of: has_primary_input CL:0000365 ! animal zygote -relationship: has_primary_input CL:0000365 ! animal zygote +intersection_of: RO:0004009 CL:0000365 ! has primary input animal zygote +relationship: RO:0004009 CL:0000365 ! has primary input animal zygote [Term] id: GO:0010155 @@ -53553,8 +53404,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of proton transport into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:sm] is_a: GO:1904062 ! regulation of monoatomic cation transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1902600 ! proton transmembrane transport -relationship: regulates GO:1902600 ! proton transmembrane transport +intersection_of: RO:0002211 GO:1902600 ! regulates (processual) proton transmembrane transport +relationship: RO:0002211 GO:1902600 ! regulates (processual) proton transmembrane transport [Term] id: GO:0010160 @@ -53566,8 +53417,8 @@ synonym: "organ boundary specification" EXACT [] is_a: GO:0003002 ! regionalization is_a: GO:0048859 ! formation of anatomical boundary intersection_of: GO:0048859 ! formation of anatomical boundary -intersection_of: occurs_in UBERON:0000062 ! organ -relationship: occurs_in UBERON:0000062 ! organ +intersection_of: BFO:0000066 UBERON:0000062 ! occurs in organ +relationship: BFO:0000066 UBERON:0000062 ! occurs in organ relationship: part_of GO:0048645 ! animal organ formation [Term] @@ -53577,19 +53428,19 @@ namespace: biological_process def: "The process in which the anatomical structures of the soma are generated and organized." [GOC:ems, ISBN:0140512888] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000468 ! multicellular organism -relationship: results_in_morphogenesis_of UBERON:0000468 ! multicellular organism +intersection_of: RO:0002298 UBERON:0000468 ! results in morphogenesis of multicellular organism +relationship: RO:0002298 UBERON:0000468 ! results in morphogenesis of multicellular organism [Term] id: GO:0010200 name: response to chitin namespace: biological_process def: "A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus." [GOC:sm] -is_a: GO:0010243 ! response to organonitrogen compound +is_a: GO:1901698 ! response to nitrogen compound is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:17029 ! chitin -relationship: has_primary_input CHEBI:17029 ! chitin +intersection_of: RO:0004009 CHEBI:17029 ! has primary input chitin +relationship: RO:0004009 CHEBI:17029 ! has primary input chitin [Term] id: GO:0010232 @@ -53599,20 +53450,6 @@ def: "The directed movement of substances, into, out of or within a cell, either is_a: GO:0003018 ! vascular process in circulatory system is_a: GO:0006810 ! transport -[Term] -id: GO:0010243 -name: response to organonitrogen compound -namespace: biological_process -def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organonitrogen stimulus. An organonitrogen compound is formally a compound containing at least one carbon-nitrogen bond." [PMID:9869419] -comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. -subset: gocheck_do_not_annotate -synonym: "response to organic nitrogen" EXACT [] -is_a: GO:1901698 ! response to nitrogen compound -intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:35352 ! organonitrogen compound -relationship: has_primary_input CHEBI:35352 ! organonitrogen compound -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27194" xsd:anyURI - [Term] id: GO:0010256 name: endomembrane system organization @@ -53623,8 +53460,8 @@ synonym: "endomembrane organization" EXACT [] synonym: "endomembrane system organisation" EXACT [GOC:mah] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0012505 ! endomembrane system -relationship: results_in_organization_of GO:0012505 ! endomembrane system +intersection_of: RO:0002592 GO:0012505 ! results in organization of endomembrane system +relationship: RO:0002592 GO:0012505 ! results in organization of endomembrane system [Term] id: GO:0010324 @@ -53646,8 +53483,8 @@ def: "Any process that modulates the frequency, rate or extent of cell fate comm is_a: GO:0050793 ! regulation of developmental process is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0045165 ! cell fate commitment -relationship: regulates GO:0045165 ! cell fate commitment +intersection_of: RO:0002211 GO:0045165 ! regulates (processual) cell fate commitment +relationship: RO:0002211 GO:0045165 ! regulates (processual) cell fate commitment [Term] id: GO:0010454 @@ -53657,8 +53494,8 @@ def: "Any process that stops, prevents or reduces the frequency or rate of cell is_a: GO:0010453 ! regulation of cell fate commitment is_a: GO:0045596 ! negative regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0045165 ! cell fate commitment -relationship: negatively_regulates GO:0045165 ! cell fate commitment +intersection_of: RO:0002212 GO:0045165 ! negatively regulates cell fate commitment +relationship: RO:0002212 GO:0045165 ! negatively regulates cell fate commitment [Term] id: GO:0010455 @@ -53668,8 +53505,8 @@ def: "Any process that activates, maintains or increases the frequency or rate o is_a: GO:0010453 ! regulation of cell fate commitment is_a: GO:0045597 ! positive regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0045165 ! cell fate commitment -relationship: positively_regulates GO:0045165 ! cell fate commitment +intersection_of: RO:0002213 GO:0045165 ! positively regulates cell fate commitment +relationship: RO:0002213 GO:0045165 ! positively regulates cell fate commitment [Term] id: GO:0010456 @@ -53678,8 +53515,8 @@ namespace: biological_process def: "The multiplication or reproduction of cells, resulting in the expansion of the dorsal spinal cord cell population." [GOC:dph, GOC:tb] is_a: GO:0061351 ! neural precursor cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: occurs_in UBERON:0002256 ! dorsal horn of spinal cord -relationship: occurs_in UBERON:0002256 ! dorsal horn of spinal cord +intersection_of: BFO:0000066 UBERON:0002256 ! occurs in dorsal horn of spinal cord +relationship: BFO:0000066 UBERON:0002256 ! occurs in dorsal horn of spinal cord [Term] id: GO:0010463 @@ -53688,8 +53525,8 @@ namespace: biological_process def: "The multiplication or reproduction of cells, resulting in the expansion of a mesenchymal cell population. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets." [GOC:dph, GOC:tb] is_a: GO:0008283 ! cell population proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0008019 ! mesenchymal cell -relationship: acts_on_population_of CL:0008019 ! mesenchymal cell +intersection_of: RO:0012003 CL:0008019 ! acts on population of mesenchymal cell +relationship: RO:0012003 CL:0008019 ! acts on population of mesenchymal cell [Term] id: GO:0010464 @@ -53698,8 +53535,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of mesenchymal cell proliferation. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets." [GOC:dph, GOC:tb] is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0010463 ! mesenchymal cell proliferation -relationship: regulates GO:0010463 ! mesenchymal cell proliferation +intersection_of: RO:0002211 GO:0010463 ! regulates (processual) mesenchymal cell proliferation +relationship: RO:0002211 GO:0010463 ! regulates (processual) mesenchymal cell proliferation [Term] id: GO:0010467 @@ -53726,8 +53563,8 @@ synonym: "regulation of protein expression" NARROW [] xref: Wikipedia:Regulation_of_gene_expression is_a: GO:0010556 ! regulation of macromolecule biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0010467 ! gene expression -relationship: regulates GO:0010467 ! gene expression +intersection_of: RO:0002211 GO:0010467 ! regulates (processual) gene expression +relationship: RO:0002211 GO:0010467 ! regulates (processual) gene expression property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22557" xsd:anyURI [Term] @@ -53735,14 +53572,14 @@ id: GO:0010469 name: regulation of signaling receptor activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity." [GOC:dph, GOC:tb] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "regulation of receptor activity" BROAD [] synonym: "regulation of signalling receptor activity" EXACT [] is_a: GO:0009966 ! regulation of signal transduction is_a: GO:0065009 ! regulation of molecular function intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0038023 ! signaling receptor activity -relationship: regulates GO:0038023 ! signaling receptor activity +intersection_of: RO:0002211 GO:0038023 ! regulates (processual) signaling receptor activity +relationship: RO:0002211 GO:0038023 ! regulates (processual) signaling receptor activity [Term] id: GO:0010470 @@ -53752,8 +53589,8 @@ def: "Any process that modulates the rate or extent of gastrulation. Gastrulatio is_a: GO:0022603 ! regulation of anatomical structure morphogenesis is_a: GO:0045995 ! regulation of embryonic development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007369 ! gastrulation -relationship: regulates GO:0007369 ! gastrulation +intersection_of: RO:0002211 GO:0007369 ! regulates (processual) gastrulation +relationship: RO:0002211 GO:0007369 ! regulates (processual) gastrulation [Term] id: GO:0010481 @@ -53763,8 +53600,8 @@ def: "Any process resulting in the physical partitioning and separation of an ep synonym: "hypodermal cell division" RELATED [GOC:kmv, GOC:rk] is_a: GO:0051301 ! cell division intersection_of: GO:0051301 ! cell division -intersection_of: has_primary_input CL:0000362 ! epidermal cell -relationship: has_primary_input CL:0000362 ! epidermal cell +intersection_of: RO:0004009 CL:0000362 ! has primary input epidermal cell +relationship: RO:0004009 CL:0000362 ! has primary input epidermal cell [Term] id: GO:0010482 @@ -53774,8 +53611,8 @@ def: "Any process that modulates the frequency, rate or extent of the physical p synonym: "regulation of hypodermal cell division" RELATED [GOC:kmv, GOC:rk] is_a: GO:0051302 ! regulation of cell division intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0010481 ! epidermal cell division -relationship: regulates GO:0010481 ! epidermal cell division +intersection_of: RO:0002211 GO:0010481 ! regulates (processual) epidermal cell division +relationship: RO:0002211 GO:0010481 ! regulates (processual) epidermal cell division [Term] id: GO:0010496 @@ -53788,12 +53625,12 @@ synonym: "single-organism intercellular transport" RELATED [] is_a: GO:0006810 ! transport is_a: GO:0009987 ! cellular process intersection_of: GO:0006810 ! transport -intersection_of: has_target_end_location CL:0000000 ! cell -intersection_of: has_target_start_location CL:0000000 ! cell -intersection_of: results_in_transport_across GO:0005615 ! extracellular space -relationship: has_target_end_location CL:0000000 ! cell -relationship: has_target_start_location CL:0000000 ! cell -relationship: results_in_transport_across GO:0005615 ! extracellular space +intersection_of: RO:0002338 CL:0000000 ! has target start location cell +intersection_of: RO:0002339 CL:0000000 ! has target end location cell +intersection_of: RO:0002342 GO:0005615 ! results in transport across extracellular space +relationship: RO:0002338 CL:0000000 ! has target start location cell +relationship: RO:0002339 CL:0000000 ! has target end location cell +relationship: RO:0002342 GO:0005615 ! results in transport across extracellular space created_by: jl creation_date: 2013-12-19T13:24:56Z @@ -53804,8 +53641,8 @@ namespace: biological_process def: "Any process that modulates the rate or frequency of platelet activation. Platelet activation is a series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue." [GOC:BHF, GOC:dph, GOC:tb] is_a: GO:0050865 ! regulation of cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030168 ! platelet activation -relationship: regulates GO:0030168 ! platelet activation +intersection_of: RO:0002211 GO:0030168 ! regulates (processual) platelet activation +relationship: RO:0002211 GO:0030168 ! regulates (processual) platelet activation [Term] id: GO:0010544 @@ -53816,8 +53653,8 @@ is_a: GO:0010543 ! regulation of platelet activation is_a: GO:0030195 ! negative regulation of blood coagulation is_a: GO:0050866 ! negative regulation of cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030168 ! platelet activation -relationship: negatively_regulates GO:0030168 ! platelet activation +intersection_of: RO:0002212 GO:0030168 ! negatively regulates platelet activation +relationship: RO:0002212 GO:0030168 ! negatively regulates platelet activation [Term] id: GO:0010549 @@ -53826,43 +53663,43 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of membrane disassembly." [GOC:dph, GOC:tb] is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030397 ! membrane disassembly -relationship: regulates GO:0030397 ! membrane disassembly +intersection_of: RO:0002211 GO:0030397 ! regulates (processual) membrane disassembly +relationship: RO:0002211 GO:0030397 ! regulates (processual) membrane disassembly [Term] id: GO:0010556 name: regulation of macromolecule biosynthetic process namespace: biological_process def: "Any process that modulates the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [GOC:dph, GOC:tb] -is_a: GO:0031326 ! regulation of cellular biosynthetic process +is_a: GO:0009889 ! regulation of biosynthetic process is_a: GO:0060255 ! regulation of macromolecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009059 ! macromolecule biosynthetic process -relationship: regulates GO:0009059 ! macromolecule biosynthetic process +intersection_of: RO:0002211 GO:0009059 ! regulates (processual) macromolecule biosynthetic process +relationship: RO:0002211 GO:0009059 ! regulates (processual) macromolecule biosynthetic process [Term] id: GO:0010557 name: positive regulation of macromolecule biosynthetic process namespace: biological_process def: "Any process that increases the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [GOC:dph, GOC:tb] +is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:0010556 ! regulation of macromolecule biosynthetic process is_a: GO:0010604 ! positive regulation of macromolecule metabolic process -is_a: GO:0031328 ! positive regulation of cellular biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009059 ! macromolecule biosynthetic process -relationship: positively_regulates GO:0009059 ! macromolecule biosynthetic process +intersection_of: RO:0002213 GO:0009059 ! positively regulates macromolecule biosynthetic process +relationship: RO:0002213 GO:0009059 ! positively regulates macromolecule biosynthetic process [Term] id: GO:0010558 name: negative regulation of macromolecule biosynthetic process namespace: biological_process def: "Any process that decreases the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [GOC:dph, GOC:tb] +is_a: GO:0009890 ! negative regulation of biosynthetic process is_a: GO:0010556 ! regulation of macromolecule biosynthetic process is_a: GO:0010605 ! negative regulation of macromolecule metabolic process -is_a: GO:0031327 ! negative regulation of cellular biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009059 ! macromolecule biosynthetic process -relationship: negatively_regulates GO:0009059 ! macromolecule biosynthetic process +intersection_of: RO:0002212 GO:0009059 ! negatively regulates macromolecule biosynthetic process +relationship: RO:0002212 GO:0009059 ! negatively regulates macromolecule biosynthetic process [Term] id: GO:0010559 @@ -53872,8 +53709,8 @@ def: "Any process that modulates the rate, frequency, or extent of the chemical is_a: GO:0010556 ! regulation of macromolecule biosynthetic process is_a: GO:1903018 ! regulation of glycoprotein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009101 ! glycoprotein biosynthetic process -relationship: regulates GO:0009101 ! glycoprotein biosynthetic process +intersection_of: RO:0002211 GO:0009101 ! regulates (processual) glycoprotein biosynthetic process +relationship: RO:0002211 GO:0009101 ! regulates (processual) glycoprotein biosynthetic process [Term] id: GO:0010560 @@ -53884,8 +53721,8 @@ is_a: GO:0010557 ! positive regulation of macromolecule biosynthetic process is_a: GO:0010559 ! regulation of glycoprotein biosynthetic process is_a: GO:1903020 ! positive regulation of glycoprotein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009101 ! glycoprotein biosynthetic process -relationship: positively_regulates GO:0009101 ! glycoprotein biosynthetic process +intersection_of: RO:0002213 GO:0009101 ! positively regulates glycoprotein biosynthetic process +relationship: RO:0002213 GO:0009101 ! positively regulates glycoprotein biosynthetic process [Term] id: GO:0010561 @@ -53896,30 +53733,30 @@ is_a: GO:0010558 ! negative regulation of macromolecule biosynthetic process is_a: GO:0010559 ! regulation of glycoprotein biosynthetic process is_a: GO:1903019 ! negative regulation of glycoprotein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009101 ! glycoprotein biosynthetic process -relationship: negatively_regulates GO:0009101 ! glycoprotein biosynthetic process +intersection_of: RO:0002212 GO:0009101 ! negatively regulates glycoprotein biosynthetic process +relationship: RO:0002212 GO:0009101 ! negatively regulates glycoprotein biosynthetic process [Term] id: GO:0010562 name: positive regulation of phosphorus metabolic process namespace: biological_process def: "Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus." [GOC:dph, GOC:tb] -is_a: GO:0031325 ! positive regulation of cellular metabolic process +is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0051174 ! regulation of phosphorus metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006793 ! phosphorus metabolic process -relationship: positively_regulates GO:0006793 ! phosphorus metabolic process +intersection_of: RO:0002213 GO:0006793 ! positively regulates phosphorus metabolic process +relationship: RO:0002213 GO:0006793 ! positively regulates phosphorus metabolic process [Term] id: GO:0010563 name: negative regulation of phosphorus metabolic process namespace: biological_process def: "Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus." [GOC:dph, GOC:tb] -is_a: GO:0031324 ! negative regulation of cellular metabolic process +is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0051174 ! regulation of phosphorus metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006793 ! phosphorus metabolic process -relationship: negatively_regulates GO:0006793 ! phosphorus metabolic process +intersection_of: RO:0002212 GO:0006793 ! negatively regulates phosphorus metabolic process +relationship: RO:0002212 GO:0006793 ! negatively regulates phosphorus metabolic process [Term] id: GO:0010564 @@ -53928,41 +53765,43 @@ namespace: biological_process def: "Any process that modulates a cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events." [GOC:dph, GOC:tb] is_a: GO:0051726 ! regulation of cell cycle intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0022402 ! cell cycle process -relationship: regulates GO:0022402 ! cell cycle process +intersection_of: RO:0002211 GO:0022402 ! regulates (processual) cell cycle process +relationship: RO:0002211 GO:0022402 ! regulates (processual) cell cycle process [Term] id: GO:0010565 -name: regulation of cellular ketone metabolic process +name: regulation of ketone metabolic process namespace: biological_process def: "Any process that modulates the chemical reactions and pathways involving any of a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups." [GOC:dph, GOC:tb] -is_a: GO:0031323 ! regulation of cellular metabolic process -is_a: GO:0062012 ! regulation of small molecule metabolic process +is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042180 ! cellular ketone metabolic process -relationship: regulates GO:0042180 ! cellular ketone metabolic process +intersection_of: RO:0002211 GO:0042180 ! regulates (processual) ketone metabolic process +relationship: RO:0002211 GO:0042180 ! regulates (processual) ketone metabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0010566 name: regulation of ketone biosynthetic process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a ketone, carried out by individual cells." [GOC:dph, GOC:tb] -is_a: GO:0010565 ! regulation of cellular ketone metabolic process -is_a: GO:0031326 ! regulation of cellular biosynthetic process +is_a: GO:0009889 ! regulation of biosynthetic process +is_a: GO:0010565 ! regulation of ketone metabolic process +is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042181 ! ketone biosynthetic process -relationship: regulates GO:0042181 ! ketone biosynthetic process +intersection_of: RO:0002211 GO:0042181 ! regulates (processual) ketone biosynthetic process +relationship: RO:0002211 GO:0042181 ! regulates (processual) ketone biosynthetic process [Term] id: GO:0010567 name: regulation of ketone catabolic process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a ketone, carried out by individual cells." [GOC:dph, GOC:tb] -is_a: GO:0010565 ! regulation of cellular ketone metabolic process -is_a: GO:0031329 ! regulation of cellular catabolic process +is_a: GO:0009894 ! regulation of catabolic process +is_a: GO:0010565 ! regulation of ketone metabolic process +is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042182 ! ketone catabolic process -relationship: regulates GO:0042182 ! ketone catabolic process +intersection_of: RO:0002211 GO:0042182 ! regulates (processual) ketone catabolic process +relationship: RO:0002211 GO:0042182 ! regulates (processual) ketone catabolic process [Term] id: GO:0010572 @@ -53972,8 +53811,8 @@ def: "Any process that increases the rate or frequency of platelet activation. P is_a: GO:0010543 ! regulation of platelet activation is_a: GO:0050867 ! positive regulation of cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030168 ! platelet activation -relationship: positively_regulates GO:0030168 ! platelet activation +intersection_of: RO:0002213 GO:0030168 ! positively regulates platelet activation +relationship: RO:0002213 GO:0030168 ! positively regulates platelet activation [Term] id: GO:0010594 @@ -53982,8 +53821,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of the orderly movement of an endothelial cell into the extracellular matrix to form an endothelium." [GOC:BHF, GOC:dph, GOC:tb] is_a: GO:0030334 ! regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0043542 ! endothelial cell migration -relationship: regulates GO:0043542 ! endothelial cell migration +intersection_of: RO:0002211 GO:0043542 ! regulates (processual) endothelial cell migration +relationship: RO:0002211 GO:0043542 ! regulates (processual) endothelial cell migration [Term] id: GO:0010595 @@ -53993,8 +53832,8 @@ def: "Any process that increases the rate, frequency, or extent of the orderly m is_a: GO:0010594 ! regulation of endothelial cell migration is_a: GO:0030335 ! positive regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0043542 ! endothelial cell migration -relationship: positively_regulates GO:0043542 ! endothelial cell migration +intersection_of: RO:0002213 GO:0043542 ! positively regulates endothelial cell migration +relationship: RO:0002213 GO:0043542 ! positively regulates endothelial cell migration [Term] id: GO:0010596 @@ -54004,8 +53843,8 @@ def: "Any process that decreases the rate, frequency, or extent of the orderly m is_a: GO:0010594 ! regulation of endothelial cell migration is_a: GO:0030336 ! negative regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0043542 ! endothelial cell migration -relationship: negatively_regulates GO:0043542 ! endothelial cell migration +intersection_of: RO:0002212 GO:0043542 ! negatively regulates endothelial cell migration +relationship: RO:0002212 GO:0043542 ! negatively regulates endothelial cell migration [Term] id: GO:0010604 @@ -54015,8 +53854,8 @@ def: "Any process that increases the frequency, rate or extent of the chemical r is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0060255 ! regulation of macromolecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0043170 ! macromolecule metabolic process -relationship: positively_regulates GO:0043170 ! macromolecule metabolic process +intersection_of: RO:0002213 GO:0043170 ! positively regulates macromolecule metabolic process +relationship: RO:0002213 GO:0043170 ! positively regulates macromolecule metabolic process [Term] id: GO:0010605 @@ -54026,8 +53865,8 @@ def: "Any process that decreases the frequency, rate or extent of the chemical r is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0060255 ! regulation of macromolecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0043170 ! macromolecule metabolic process -relationship: negatively_regulates GO:0043170 ! macromolecule metabolic process +intersection_of: RO:0002212 GO:0043170 ! negatively regulates macromolecule metabolic process +relationship: RO:0002212 GO:0043170 ! negatively regulates macromolecule metabolic process [Term] id: GO:0010608 @@ -54045,8 +53884,8 @@ def: "Any process that modulates the rate, frequency or extent of the enlargemen is_a: GO:0014743 ! regulation of muscle hypertrophy is_a: GO:0043502 ! regulation of muscle adaptation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003300 ! cardiac muscle hypertrophy -relationship: regulates GO:0003300 ! cardiac muscle hypertrophy +intersection_of: RO:0002211 GO:0003300 ! regulates (processual) cardiac muscle hypertrophy +relationship: RO:0002211 GO:0003300 ! regulates (processual) cardiac muscle hypertrophy [Term] id: GO:0010612 @@ -54055,8 +53894,8 @@ namespace: biological_process def: "Any process that modulates the rate, extent or frequency of the process in which cardiac muscle adapts, with consequent modifications to structural and/or functional phenotypes, in response to a stimulus. Stimuli include contractile activity, loading conditions, substrate supply, and environmental factors." [GOC:dph, GOC:tb] is_a: GO:0043502 ! regulation of muscle adaptation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014887 ! cardiac muscle adaptation -relationship: regulates GO:0014887 ! cardiac muscle adaptation +intersection_of: RO:0002211 GO:0014887 ! regulates (processual) cardiac muscle adaptation +relationship: RO:0002211 GO:0014887 ! regulates (processual) cardiac muscle adaptation [Term] id: GO:0010613 @@ -54066,8 +53905,8 @@ def: "Any process that increases the rate, frequency or extent of the enlargemen is_a: GO:0010611 ! regulation of cardiac muscle hypertrophy is_a: GO:0014742 ! positive regulation of muscle hypertrophy intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003300 ! cardiac muscle hypertrophy -relationship: positively_regulates GO:0003300 ! cardiac muscle hypertrophy +intersection_of: RO:0002213 GO:0003300 ! positively regulates cardiac muscle hypertrophy +relationship: RO:0002213 GO:0003300 ! positively regulates cardiac muscle hypertrophy [Term] id: GO:0010614 @@ -54077,8 +53916,8 @@ def: "Any process that decreases the rate, frequency or extent of the enlargemen is_a: GO:0010611 ! regulation of cardiac muscle hypertrophy is_a: GO:0014741 ! negative regulation of muscle hypertrophy intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003300 ! cardiac muscle hypertrophy -relationship: negatively_regulates GO:0003300 ! cardiac muscle hypertrophy +intersection_of: RO:0002212 GO:0003300 ! negatively regulates cardiac muscle hypertrophy +relationship: RO:0002212 GO:0003300 ! negatively regulates cardiac muscle hypertrophy [Term] id: GO:0010615 @@ -54088,8 +53927,8 @@ def: "Any process that increases the rate, extent or frequency of the process in is_a: GO:0010612 ! regulation of cardiac muscle adaptation is_a: GO:0014744 ! positive regulation of muscle adaptation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014887 ! cardiac muscle adaptation -relationship: positively_regulates GO:0014887 ! cardiac muscle adaptation +intersection_of: RO:0002213 GO:0014887 ! positively regulates cardiac muscle adaptation +relationship: RO:0002213 GO:0014887 ! positively regulates cardiac muscle adaptation [Term] id: GO:0010616 @@ -54099,8 +53938,8 @@ def: "Any process that decreases the rate, extent or frequency of the process in is_a: GO:0010612 ! regulation of cardiac muscle adaptation is_a: GO:0014745 ! negative regulation of muscle adaptation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014887 ! cardiac muscle adaptation -relationship: negatively_regulates GO:0014887 ! cardiac muscle adaptation +intersection_of: RO:0002212 GO:0014887 ! negatively regulates cardiac muscle adaptation +relationship: RO:0002212 GO:0014887 ! negatively regulates cardiac muscle adaptation [Term] id: GO:0010623 @@ -54123,8 +53962,8 @@ namespace: biological_process def: "Any process that modulates the frequency or rate of multiplication or reproduction of Schwann cells, resulting in the expansion of their population. Schwann cells are a type of glial cell in the peripheral nervous system." [GOC:dph, GOC:sl, GOC:tb] is_a: GO:0060251 ! regulation of glial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014010 ! Schwann cell proliferation -relationship: regulates GO:0014010 ! Schwann cell proliferation +intersection_of: RO:0002211 GO:0014010 ! regulates (processual) Schwann cell proliferation +relationship: RO:0002211 GO:0014010 ! regulates (processual) Schwann cell proliferation [Term] id: GO:0010625 @@ -54134,8 +53973,8 @@ def: "Any process that increases the frequency or rate of the multiplication or is_a: GO:0010624 ! regulation of Schwann cell proliferation is_a: GO:0060252 ! positive regulation of glial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014010 ! Schwann cell proliferation -relationship: positively_regulates GO:0014010 ! Schwann cell proliferation +intersection_of: RO:0002213 GO:0014010 ! positively regulates Schwann cell proliferation +relationship: RO:0002213 GO:0014010 ! positively regulates Schwann cell proliferation [Term] id: GO:0010626 @@ -54145,8 +53984,8 @@ def: "Any process that decreases the frequency or extent of the multiplication o is_a: GO:0010624 ! regulation of Schwann cell proliferation is_a: GO:0060253 ! negative regulation of glial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014010 ! Schwann cell proliferation -relationship: negatively_regulates GO:0014010 ! Schwann cell proliferation +intersection_of: RO:0002212 GO:0014010 ! negatively regulates Schwann cell proliferation +relationship: RO:0002212 GO:0014010 ! negatively regulates Schwann cell proliferation [Term] id: GO:0010628 @@ -54156,8 +53995,8 @@ def: "Any process that increases the frequency, rate or extent of gene expressio is_a: GO:0010468 ! regulation of gene expression is_a: GO:0010557 ! positive regulation of macromolecule biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0010467 ! gene expression -relationship: positively_regulates GO:0010467 ! gene expression +intersection_of: RO:0002213 GO:0010467 ! positively regulates gene expression +relationship: RO:0002213 GO:0010467 ! positively regulates gene expression property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22557" xsd:anyURI [Term] @@ -54170,8 +54009,8 @@ synonym: "gene silencing" RELATED [] is_a: GO:0010468 ! regulation of gene expression is_a: GO:0010558 ! negative regulation of macromolecule biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0010467 ! gene expression -relationship: negatively_regulates GO:0010467 ! gene expression +intersection_of: RO:0002212 GO:0010467 ! negatively regulates gene expression +relationship: RO:0002212 GO:0010467 ! negatively regulates gene expression property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22557" xsd:anyURI [Term] @@ -54181,9 +54020,9 @@ namespace: biological_process def: "The orderly movement of an epithelial cell from one site to another, often during the development of a multicellular organism." [GOC:ascb_2009, GOC:BHF, GOC:dph, GOC:tb] is_a: GO:0001667 ! ameboidal-type cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000066 ! epithelial cell +intersection_of: RO:0002565 CL:0000066 ! results in movement of epithelial cell relationship: part_of GO:0090132 ! epithelium migration -relationship: results_in_movement_of CL:0000066 ! epithelial cell +relationship: RO:0002565 CL:0000066 ! results in movement of epithelial cell [Term] id: GO:0010632 @@ -54193,9 +54032,9 @@ def: "Any process that modulates the frequency, rate or extent of epithelial cel is_a: GO:0030334 ! regulation of cell migration is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0010631 ! epithelial cell migration -relationship: regulates GO:0010631 ! epithelial cell migration -relationship: regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002211 GO:0010631 ! regulates (processual) epithelial cell migration +relationship: RO:0002211 GO:0010631 ! regulates (processual) epithelial cell migration +relationship: RO:0002211 GO:0032501 ! regulates (processual) multicellular organismal process [Term] id: GO:0010633 @@ -54206,9 +54045,9 @@ is_a: GO:0010632 ! regulation of epithelial cell migration is_a: GO:0030336 ! negative regulation of cell migration is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0010631 ! epithelial cell migration -relationship: negatively_regulates GO:0010631 ! epithelial cell migration -relationship: negatively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002212 GO:0010631 ! negatively regulates epithelial cell migration +relationship: RO:0002212 GO:0010631 ! negatively regulates epithelial cell migration +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process [Term] id: GO:0010634 @@ -54218,8 +54057,8 @@ def: "Any process that activates or increases the frequency, rate or extent of e is_a: GO:0010632 ! regulation of epithelial cell migration is_a: GO:0030335 ! positive regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0010631 ! epithelial cell migration -relationship: positively_regulates GO:0010631 ! epithelial cell migration +intersection_of: RO:0002213 GO:0010631 ! positively regulates epithelial cell migration +relationship: RO:0002213 GO:0010631 ! positively regulates epithelial cell migration [Term] id: GO:0010638 @@ -54231,8 +54070,8 @@ synonym: "positive regulation of organelle organization and biogenesis" RELATED is_a: GO:0033043 ! regulation of organelle organization is_a: GO:0051130 ! positive regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006996 ! organelle organization -relationship: positively_regulates GO:0006996 ! organelle organization +intersection_of: RO:0002213 GO:0006996 ! positively regulates organelle organization +relationship: RO:0002213 GO:0006996 ! positively regulates organelle organization [Term] id: GO:0010639 @@ -54244,8 +54083,8 @@ synonym: "negative regulation of organelle organization and biogenesis" RELATED is_a: GO:0033043 ! regulation of organelle organization is_a: GO:0051129 ! negative regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006996 ! organelle organization -relationship: negatively_regulates GO:0006996 ! organelle organization +intersection_of: RO:0002212 GO:0006996 ! negatively regulates organelle organization +relationship: RO:0002212 GO:0006996 ! negatively regulates organelle organization [Term] id: GO:0010646 @@ -54254,8 +54093,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." [GOC:dph, GOC:tb] is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007154 ! cell communication -relationship: regulates GO:0007154 ! cell communication +intersection_of: RO:0002211 GO:0007154 ! regulates (processual) cell communication +relationship: RO:0002211 GO:0007154 ! regulates (processual) cell communication [Term] id: GO:0010647 @@ -54265,8 +54104,8 @@ def: "Any process that increases the frequency, rate or extent of cell communica is_a: GO:0010646 ! regulation of cell communication is_a: GO:0048522 ! positive regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007154 ! cell communication -relationship: positively_regulates GO:0007154 ! cell communication +intersection_of: RO:0002213 GO:0007154 ! positively regulates cell communication +relationship: RO:0002213 GO:0007154 ! positively regulates cell communication [Term] id: GO:0010648 @@ -54276,8 +54115,8 @@ def: "Any process that decreases the frequency, rate or extent of cell communica is_a: GO:0010646 ! regulation of cell communication is_a: GO:0048523 ! negative regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007154 ! cell communication -relationship: negatively_regulates GO:0007154 ! cell communication +intersection_of: RO:0002212 GO:0007154 ! negatively regulates cell communication +relationship: RO:0002212 GO:0007154 ! negatively regulates cell communication [Term] id: GO:0010656 @@ -54288,8 +54127,8 @@ synonym: "negative regulation of muscle cell apoptosis" NARROW [] is_a: GO:0010660 ! regulation of muscle cell apoptotic process is_a: GO:0043066 ! negative regulation of apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0010657 ! muscle cell apoptotic process -relationship: negatively_regulates GO:0010657 ! muscle cell apoptotic process +intersection_of: RO:0002212 GO:0010657 ! negatively regulates muscle cell apoptotic process +relationship: RO:0002212 GO:0010657 ! negatively regulates muscle cell apoptotic process [Term] id: GO:0010657 @@ -54299,10 +54138,10 @@ def: "A form of programmed cell death induced by external or internal signals th synonym: "muscle cell apoptosis" NARROW [] is_a: GO:0006915 ! apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000187 ! muscle cell +intersection_of: BFO:0000066 CL:0000187 ! occurs in muscle cell +relationship: BFO:0000066 CL:0000187 ! occurs in muscle cell relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: occurs_in CL:0000187 ! muscle cell -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa [Term] id: GO:0010658 @@ -54312,8 +54151,8 @@ def: "A form of programmed cell death induced by external or internal signals th synonym: "striated muscle cell apoptosis" NARROW [] is_a: GO:0010657 ! muscle cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000737 ! striated muscle cell -relationship: occurs_in CL:0000737 ! striated muscle cell +intersection_of: BFO:0000066 CL:0000737 ! occurs in striated muscle cell +relationship: BFO:0000066 CL:0000737 ! occurs in striated muscle cell [Term] id: GO:0010659 @@ -54323,8 +54162,8 @@ def: "A form of programmed cell death induced by external or internal signals th synonym: "cardiac muscle cell apoptosis" NARROW [] is_a: GO:0010658 ! striated muscle cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000746 ! cardiac muscle cell -relationship: occurs_in CL:0000746 ! cardiac muscle cell +intersection_of: BFO:0000066 CL:0000746 ! occurs in cardiac muscle cell +relationship: BFO:0000066 CL:0000746 ! occurs in cardiac muscle cell [Term] id: GO:0010660 @@ -54334,8 +54173,8 @@ def: "Any process that modulates the rate or frequency of muscle cell apoptotic synonym: "regulation of muscle cell apoptosis" NARROW [] is_a: GO:0042981 ! regulation of apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0010657 ! muscle cell apoptotic process -relationship: regulates GO:0010657 ! muscle cell apoptotic process +intersection_of: RO:0002211 GO:0010657 ! regulates (processual) muscle cell apoptotic process +relationship: RO:0002211 GO:0010657 ! regulates (processual) muscle cell apoptotic process [Term] id: GO:0010661 @@ -54346,8 +54185,8 @@ synonym: "positive regulation of muscle cell apoptosis" NARROW [] is_a: GO:0010660 ! regulation of muscle cell apoptotic process is_a: GO:0043065 ! positive regulation of apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0010657 ! muscle cell apoptotic process -relationship: positively_regulates GO:0010657 ! muscle cell apoptotic process +intersection_of: RO:0002213 GO:0010657 ! positively regulates muscle cell apoptotic process +relationship: RO:0002213 GO:0010657 ! positively regulates muscle cell apoptotic process [Term] id: GO:0010662 @@ -54357,8 +54196,8 @@ def: "Any process that modulates the rate or extent of striated muscle cell apop synonym: "regulation of striated muscle cell apoptosis" NARROW [] is_a: GO:0010660 ! regulation of muscle cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0010658 ! striated muscle cell apoptotic process -relationship: regulates GO:0010658 ! striated muscle cell apoptotic process +intersection_of: RO:0002211 GO:0010658 ! regulates (processual) striated muscle cell apoptotic process +relationship: RO:0002211 GO:0010658 ! regulates (processual) striated muscle cell apoptotic process [Term] id: GO:0010663 @@ -54369,8 +54208,8 @@ synonym: "positive regulation of striated muscle cell apoptosis" NARROW [] is_a: GO:0010661 ! positive regulation of muscle cell apoptotic process is_a: GO:0010662 ! regulation of striated muscle cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0010658 ! striated muscle cell apoptotic process -relationship: positively_regulates GO:0010658 ! striated muscle cell apoptotic process +intersection_of: RO:0002213 GO:0010658 ! positively regulates striated muscle cell apoptotic process +relationship: RO:0002213 GO:0010658 ! positively regulates striated muscle cell apoptotic process [Term] id: GO:0010664 @@ -54385,8 +54224,8 @@ synonym: "negative regulation of striated muscle cell apoptosis" NARROW [] is_a: GO:0010656 ! negative regulation of muscle cell apoptotic process is_a: GO:0010662 ! regulation of striated muscle cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0010658 ! striated muscle cell apoptotic process -relationship: negatively_regulates GO:0010658 ! striated muscle cell apoptotic process +intersection_of: RO:0002212 GO:0010658 ! negatively regulates striated muscle cell apoptotic process +relationship: RO:0002212 GO:0010658 ! negatively regulates striated muscle cell apoptotic process [Term] id: GO:0010665 @@ -54396,8 +54235,8 @@ def: "Any process that modulates the rate or extent of cardiac cell apoptotic pr synonym: "regulation of cardiac muscle cell apoptosis" NARROW [] is_a: GO:0010662 ! regulation of striated muscle cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0010659 ! cardiac muscle cell apoptotic process -relationship: regulates GO:0010659 ! cardiac muscle cell apoptotic process +intersection_of: RO:0002211 GO:0010659 ! regulates (processual) cardiac muscle cell apoptotic process +relationship: RO:0002211 GO:0010659 ! regulates (processual) cardiac muscle cell apoptotic process [Term] id: GO:0010666 @@ -54408,8 +54247,8 @@ synonym: "positive regulation of cardiac muscle cell apoptosis" NARROW [] is_a: GO:0010663 ! positive regulation of striated muscle cell apoptotic process is_a: GO:0010665 ! regulation of cardiac muscle cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0010659 ! cardiac muscle cell apoptotic process -relationship: positively_regulates GO:0010659 ! cardiac muscle cell apoptotic process +intersection_of: RO:0002213 GO:0010659 ! positively regulates cardiac muscle cell apoptotic process +relationship: RO:0002213 GO:0010659 ! positively regulates cardiac muscle cell apoptotic process [Term] id: GO:0010667 @@ -54424,8 +54263,8 @@ synonym: "negative regulation of cardiac muscle cell apoptosis" NARROW [] is_a: GO:0010664 ! negative regulation of striated muscle cell apoptotic process is_a: GO:0010665 ! regulation of cardiac muscle cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0010659 ! cardiac muscle cell apoptotic process -relationship: negatively_regulates GO:0010659 ! cardiac muscle cell apoptotic process +intersection_of: RO:0002212 GO:0010659 ! negatively regulates cardiac muscle cell apoptotic process +relationship: RO:0002212 GO:0010659 ! negatively regulates cardiac muscle cell apoptotic process [Term] id: GO:0010668 @@ -54434,9 +54273,9 @@ namespace: biological_process def: "The process in which relatively unspecialized cells acquire specialized structural and/or functional features of an ectodermal cell. Differentiation includes the processes involved in commitment of a cell to a specific fate." [GOC:dph, GOC:tb] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000221 ! ectodermal cell +intersection_of: RO:0002315 CL:0000221 ! results in acquisition of features of ectodermal cell relationship: part_of GO:0007398 ! ectoderm development -relationship: results_in_acquisition_of_features_of CL:0000221 ! ectodermal cell +relationship: RO:0002315 CL:0000221 ! results in acquisition of features of ectodermal cell [Term] id: GO:0010700 @@ -54446,8 +54285,8 @@ def: "Any process that decreases the frequency, rate or extent of the regulated is_a: GO:0014061 ! regulation of norepinephrine secretion is_a: GO:0033604 ! negative regulation of catecholamine secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048243 ! norepinephrine secretion -relationship: negatively_regulates GO:0048243 ! norepinephrine secretion +intersection_of: RO:0002212 GO:0048243 ! negatively regulates norepinephrine secretion +relationship: RO:0002212 GO:0048243 ! negatively regulates norepinephrine secretion [Term] id: GO:0010701 @@ -54457,8 +54296,8 @@ def: "Any process that increases the frequency, rate or extent of the regulated is_a: GO:0014061 ! regulation of norepinephrine secretion is_a: GO:0033605 ! positive regulation of catecholamine secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048243 ! norepinephrine secretion -relationship: positively_regulates GO:0048243 ! norepinephrine secretion +intersection_of: RO:0002213 GO:0048243 ! positively regulates norepinephrine secretion +relationship: RO:0002213 GO:0048243 ! positively regulates norepinephrine secretion [Term] id: GO:0010710 @@ -54471,8 +54310,8 @@ synonym: "regulation of collagen degradation" EXACT [GOC:dph, GOC:tb] is_a: GO:0009894 ! regulation of catabolic process is_a: GO:0010712 ! regulation of collagen metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030574 ! collagen catabolic process -relationship: regulates GO:0030574 ! collagen catabolic process +intersection_of: RO:0002211 GO:0030574 ! regulates (processual) collagen catabolic process +relationship: RO:0002211 GO:0030574 ! regulates (processual) collagen catabolic process [Term] id: GO:0010711 @@ -54490,8 +54329,8 @@ is_a: GO:0009895 ! negative regulation of catabolic process is_a: GO:0010710 ! regulation of collagen catabolic process is_a: GO:0010713 ! negative regulation of collagen metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030574 ! collagen catabolic process -relationship: negatively_regulates GO:0030574 ! collagen catabolic process +intersection_of: RO:0002212 GO:0030574 ! negatively regulates collagen catabolic process +relationship: RO:0002212 GO:0030574 ! negatively regulates collagen catabolic process [Term] id: GO:0010712 @@ -54501,8 +54340,8 @@ def: "Any process that modulates the frequency, rate or extent of the chemical r synonym: "regulation of collagen metabolism" EXACT [GOC:dph, GOC:tb] is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032963 ! collagen metabolic process -relationship: regulates GO:0032963 ! collagen metabolic process +intersection_of: RO:0002211 GO:0032963 ! regulates (processual) collagen metabolic process +relationship: RO:0002211 GO:0032963 ! regulates (processual) collagen metabolic process [Term] id: GO:0010713 @@ -54512,8 +54351,8 @@ def: "Any process that decreases the frequency, rate or extent of the chemical r is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0010712 ! regulation of collagen metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032963 ! collagen metabolic process -relationship: negatively_regulates GO:0032963 ! collagen metabolic process +intersection_of: RO:0002212 GO:0032963 ! negatively regulates collagen metabolic process +relationship: RO:0002212 GO:0032963 ! negatively regulates collagen metabolic process [Term] id: GO:0010714 @@ -54524,8 +54363,8 @@ synonym: "positive regulation of collagen metabolism" EXACT [GOC:dph, GOC:tb] is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0010712 ! regulation of collagen metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032963 ! collagen metabolic process -relationship: positively_regulates GO:0032963 ! collagen metabolic process +intersection_of: RO:0002213 GO:0032963 ! positively regulates collagen metabolic process +relationship: RO:0002213 GO:0032963 ! positively regulates collagen metabolic process [Term] id: GO:0010715 @@ -54536,8 +54375,8 @@ synonym: "regulation of extracellular matrix breakdown" EXACT [GOC:dph, GOC:tb] synonym: "regulation of extracellular matrix degradation" EXACT [GOC:dph, GOC:tb] is_a: GO:1903053 ! regulation of extracellular matrix organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0022617 ! extracellular matrix disassembly -relationship: regulates GO:0022617 ! extracellular matrix disassembly +intersection_of: RO:0002211 GO:0022617 ! regulates (processual) extracellular matrix disassembly +relationship: RO:0002211 GO:0022617 ! regulates (processual) extracellular matrix disassembly [Term] id: GO:0010716 @@ -54553,8 +54392,8 @@ synonym: "negative regulation of extracellular matrix degradation" EXACT [GOC:dp is_a: GO:0010715 ! regulation of extracellular matrix disassembly is_a: GO:1903054 ! negative regulation of extracellular matrix organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0022617 ! extracellular matrix disassembly -relationship: negatively_regulates GO:0022617 ! extracellular matrix disassembly +intersection_of: RO:0002212 GO:0022617 ! negatively regulates extracellular matrix disassembly +relationship: RO:0002212 GO:0022617 ! negatively regulates extracellular matrix disassembly [Term] id: GO:0010717 @@ -54563,8 +54402,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of epithelial to mesenchymal transition. Epithelial to mesenchymal transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell." [GOC:BHF, GOC:dph, GOC:tb] is_a: GO:0045595 ! regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001837 ! epithelial to mesenchymal transition -relationship: regulates GO:0001837 ! epithelial to mesenchymal transition +intersection_of: RO:0002211 GO:0001837 ! regulates (processual) epithelial to mesenchymal transition +relationship: RO:0002211 GO:0001837 ! regulates (processual) epithelial to mesenchymal transition [Term] id: GO:0010718 @@ -54575,9 +54414,9 @@ is_a: GO:0010717 ! regulation of epithelial to mesenchymal transition is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001837 ! epithelial to mesenchymal transition -relationship: positively_regulates GO:0001837 ! epithelial to mesenchymal transition -relationship: positively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002213 GO:0001837 ! positively regulates epithelial to mesenchymal transition +relationship: RO:0002213 GO:0001837 ! positively regulates epithelial to mesenchymal transition +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process [Term] id: GO:0010719 @@ -54588,9 +54427,9 @@ is_a: GO:0010717 ! regulation of epithelial to mesenchymal transition is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001837 ! epithelial to mesenchymal transition -relationship: negatively_regulates GO:0001837 ! epithelial to mesenchymal transition -relationship: negatively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002212 GO:0001837 ! negatively regulates epithelial to mesenchymal transition +relationship: RO:0002212 GO:0001837 ! negatively regulates epithelial to mesenchymal transition +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process [Term] id: GO:0010720 @@ -54600,8 +54439,8 @@ def: "Any process that increases the rate, frequency or extent of the progressio is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:0060284 ! regulation of cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048468 ! cell development -relationship: positively_regulates GO:0048468 ! cell development +intersection_of: RO:0002213 GO:0048468 ! positively regulates cell development +relationship: RO:0002213 GO:0048468 ! positively regulates cell development [Term] id: GO:0010721 @@ -54611,8 +54450,8 @@ def: "Any process that decreases the rate, frequency or extent of the progressio is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:0060284 ! regulation of cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048468 ! cell development -relationship: negatively_regulates GO:0048468 ! cell development +intersection_of: RO:0002212 GO:0048468 ! negatively regulates cell development +relationship: RO:0002212 GO:0048468 ! negatively regulates cell development [Term] id: GO:0010758 @@ -54622,8 +54461,8 @@ def: "Any process that modulates the rate, frequency or extent of macrophage che is_a: GO:0002688 ! regulation of leukocyte chemotaxis is_a: GO:1905521 ! regulation of macrophage migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048246 ! macrophage chemotaxis -relationship: regulates GO:0048246 ! macrophage chemotaxis +intersection_of: RO:0002211 GO:0048246 ! regulates (processual) macrophage chemotaxis +relationship: RO:0002211 GO:0048246 ! regulates (processual) macrophage chemotaxis [Term] id: GO:0010759 @@ -54635,8 +54474,8 @@ is_a: GO:0010758 ! regulation of macrophage chemotaxis is_a: GO:0071622 ! regulation of granulocyte chemotaxis is_a: GO:1905523 ! positive regulation of macrophage migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048246 ! macrophage chemotaxis -relationship: positively_regulates GO:0048246 ! macrophage chemotaxis +intersection_of: RO:0002213 GO:0048246 ! positively regulates macrophage chemotaxis +relationship: RO:0002213 GO:0048246 ! positively regulates macrophage chemotaxis [Term] id: GO:0010760 @@ -54647,8 +54486,8 @@ is_a: GO:0002689 ! negative regulation of leukocyte chemotaxis is_a: GO:0010758 ! regulation of macrophage chemotaxis is_a: GO:1905522 ! negative regulation of macrophage migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048246 ! macrophage chemotaxis -relationship: negatively_regulates GO:0048246 ! macrophage chemotaxis +intersection_of: RO:0002212 GO:0048246 ! negatively regulates macrophage chemotaxis +relationship: RO:0002212 GO:0048246 ! negatively regulates macrophage chemotaxis [Term] id: GO:0010761 @@ -54658,8 +54497,8 @@ def: "Cell migration that is accomplished by extension and retraction of a fibro synonym: "fibroblast cell migration" EXACT [GOC:dph] is_a: GO:0001667 ! ameboidal-type cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000057 ! fibroblast -relationship: results_in_movement_of CL:0000057 ! fibroblast +intersection_of: RO:0002565 CL:0000057 ! results in movement of fibroblast +relationship: RO:0002565 CL:0000057 ! results in movement of fibroblast [Term] id: GO:0010762 @@ -54669,8 +54508,8 @@ def: "Any process that modulates the rate, frequency or extent of fibroblast cel synonym: "regulation of fibroblast cell migration" EXACT [GOC:dph] is_a: GO:0030334 ! regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0010761 ! fibroblast migration -relationship: regulates GO:0010761 ! fibroblast migration +intersection_of: RO:0002211 GO:0010761 ! regulates (processual) fibroblast migration +relationship: RO:0002211 GO:0010761 ! regulates (processual) fibroblast migration [Term] id: GO:0010763 @@ -54681,8 +54520,8 @@ synonym: "positive regulation of fibroblast cell migration" EXACT [GOC:dph] is_a: GO:0010762 ! regulation of fibroblast migration is_a: GO:0030335 ! positive regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0010761 ! fibroblast migration -relationship: positively_regulates GO:0010761 ! fibroblast migration +intersection_of: RO:0002213 GO:0010761 ! positively regulates fibroblast migration +relationship: RO:0002213 GO:0010761 ! positively regulates fibroblast migration [Term] id: GO:0010764 @@ -54693,8 +54532,8 @@ synonym: "negative regulation of fibroblast cell migration" EXACT [GOC:dph] is_a: GO:0010762 ! regulation of fibroblast migration is_a: GO:0030336 ! negative regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0010761 ! fibroblast migration -relationship: negatively_regulates GO:0010761 ! fibroblast migration +intersection_of: RO:0002212 GO:0010761 ! negatively regulates fibroblast migration +relationship: RO:0002212 GO:0010761 ! negatively regulates fibroblast migration [Term] id: GO:0010765 @@ -54704,8 +54543,8 @@ def: "Any process that increases the frequency, rate or extent of the directed m is_a: GO:0002028 ! regulation of sodium ion transport is_a: GO:0043270 ! positive regulation of monoatomic ion transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006814 ! sodium ion transport -relationship: positively_regulates GO:0006814 ! sodium ion transport +intersection_of: RO:0002213 GO:0006814 ! positively regulates sodium ion transport +relationship: RO:0002213 GO:0006814 ! positively regulates sodium ion transport [Term] id: GO:0010766 @@ -54715,8 +54554,8 @@ def: "Any process that decreases the frequency, rate or extent of the directed m is_a: GO:0002028 ! regulation of sodium ion transport is_a: GO:0043271 ! negative regulation of monoatomic ion transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006814 ! sodium ion transport -relationship: negatively_regulates GO:0006814 ! sodium ion transport +intersection_of: RO:0002212 GO:0006814 ! negatively regulates sodium ion transport +relationship: RO:0002212 GO:0006814 ! negatively regulates sodium ion transport [Term] id: GO:0010770 @@ -54726,8 +54565,8 @@ def: "Any process that increases the frequency, rate or extent of cell morphogen is_a: GO:0010720 ! positive regulation of cell development is_a: GO:0022604 ! regulation of cell morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0000902 ! cell morphogenesis -relationship: positively_regulates GO:0000902 ! cell morphogenesis +intersection_of: RO:0002213 GO:0000902 ! positively regulates cell morphogenesis +relationship: RO:0002213 GO:0000902 ! positively regulates cell morphogenesis property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24299" xsd:anyURI [Term] @@ -54738,8 +54577,8 @@ def: "Any process that decreases the frequency, rate or extent of cell morphogen is_a: GO:0010721 ! negative regulation of cell development is_a: GO:0022604 ! regulation of cell morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0000902 ! cell morphogenesis -relationship: negatively_regulates GO:0000902 ! cell morphogenesis +intersection_of: RO:0002212 GO:0000902 ! negatively regulates cell morphogenesis +relationship: RO:0002212 GO:0000902 ! negatively regulates cell morphogenesis property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24299" xsd:anyURI [Term] @@ -54749,10 +54588,9 @@ namespace: biological_process def: "The chemical reactions and pathways resulting in the breakdown of the peptide calcitonin." [GOC:BHF, GOC:rl] is_a: GO:0042447 ! hormone catabolic process is_a: GO:0043603 ! amide metabolic process -is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:3306 ! calcitonin -relationship: has_primary_input CHEBI:3306 ! calcitonin +intersection_of: RO:0004009 CHEBI:3306 ! has primary input calcitonin +relationship: RO:0004009 CHEBI:3306 ! has primary input calcitonin [Term] id: GO:0010817 @@ -54769,8 +54607,8 @@ synonym: "T-cell chemotaxis" EXACT [CL:0000084] is_a: GO:0048247 ! lymphocyte chemotaxis is_a: GO:0072678 ! T cell migration intersection_of: GO:0006935 ! chemotaxis -intersection_of: results_in_movement_of CL:0000084 ! T cell -relationship: results_in_movement_of CL:0000084 ! T cell +intersection_of: RO:0002565 CL:0000084 ! results in movement of T cell +relationship: RO:0002565 CL:0000084 ! results in movement of T cell [Term] id: GO:0010819 @@ -54780,8 +54618,8 @@ def: "Any process that modulates the rate, frequency or extent of T cell chemota is_a: GO:1901623 ! regulation of lymphocyte chemotaxis is_a: GO:2000404 ! regulation of T cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0010818 ! T cell chemotaxis -relationship: regulates GO:0010818 ! T cell chemotaxis +intersection_of: RO:0002211 GO:0010818 ! regulates (processual) T cell chemotaxis +relationship: RO:0002211 GO:0010818 ! regulates (processual) T cell chemotaxis [Term] id: GO:0010820 @@ -54792,43 +54630,46 @@ is_a: GO:0010819 ! regulation of T cell chemotaxis is_a: GO:0140131 ! positive regulation of lymphocyte chemotaxis is_a: GO:2000406 ! positive regulation of T cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0010818 ! T cell chemotaxis -relationship: positively_regulates GO:0010818 ! T cell chemotaxis +intersection_of: RO:0002213 GO:0010818 ! positively regulates T cell chemotaxis +relationship: RO:0002213 GO:0010818 ! positively regulates T cell chemotaxis [Term] id: GO:0010827 -name: regulation of glucose transmembrane transport +name: regulation of D-glucose transmembrane transport namespace: biological_process def: "Any process that modulates the frequency, rate or extent of glucose transport across a membrane. Glucose transport is the directed movement of the hexose monosaccharide glucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:dph, GOC:tb] +synonym: "regulation of glucose transmembrane transport" EXACT [] synonym: "regulation of glucose transport" RELATED [] is_a: GO:0034762 ! regulation of transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1904659 ! glucose transmembrane transport -relationship: regulates GO:1904659 ! glucose transmembrane transport +intersection_of: RO:0002211 GO:1904659 ! regulates (processual) D-glucose transmembrane transport +relationship: RO:0002211 GO:1904659 ! regulates (processual) D-glucose transmembrane transport [Term] id: GO:0010828 -name: positive regulation of glucose transmembrane transport +name: positive regulation of D-glucose transmembrane transport namespace: biological_process def: "Any process that increases the frequency, rate or extent of glucose transport across a membrane. Glucose transport is the directed movement of the hexose monosaccharide glucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:BHF, GOC:dph, GOC:tb] +synonym: "positive regulation of glucose transmembrane transport" EXACT [] synonym: "positive regulation of glucose transport" RELATED [] -is_a: GO:0010827 ! regulation of glucose transmembrane transport +is_a: GO:0010827 ! regulation of D-glucose transmembrane transport is_a: GO:0034764 ! positive regulation of transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1904659 ! glucose transmembrane transport -relationship: positively_regulates GO:1904659 ! glucose transmembrane transport +intersection_of: RO:0002213 GO:1904659 ! positively regulates D-glucose transmembrane transport +relationship: RO:0002213 GO:1904659 ! positively regulates D-glucose transmembrane transport [Term] id: GO:0010829 -name: negative regulation of glucose transmembrane transport +name: negative regulation of D-glucose transmembrane transport namespace: biological_process def: "Any process that decreases the frequency, rate or extent of glucose transport across a membrane. Glucose transport is the directed movement of the hexose monosaccharide glucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:BHF, GOC:dph, GOC:tb] +synonym: "negative regulation of glucose transmembrane transport" EXACT [] synonym: "negative regulation of glucose transport" RELATED [] -is_a: GO:0010827 ! regulation of glucose transmembrane transport +is_a: GO:0010827 ! regulation of D-glucose transmembrane transport is_a: GO:0034763 ! negative regulation of transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1904659 ! glucose transmembrane transport -relationship: negatively_regulates GO:1904659 ! glucose transmembrane transport +intersection_of: RO:0002212 GO:1904659 ! negatively regulates D-glucose transmembrane transport +relationship: RO:0002212 GO:1904659 ! negatively regulates D-glucose transmembrane transport [Term] id: GO:0010830 @@ -54837,8 +54678,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of myotube differentiation. Myotube differentiation is the process in which a relatively unspecialized cell acquires specialized features of a myotube cell. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse." [GOC:dph, GOC:tb] is_a: GO:0051153 ! regulation of striated muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014902 ! myotube differentiation -relationship: regulates GO:0014902 ! myotube differentiation +intersection_of: RO:0002211 GO:0014902 ! regulates (processual) myotube differentiation +relationship: RO:0002211 GO:0014902 ! regulates (processual) myotube differentiation [Term] id: GO:0010831 @@ -54848,8 +54689,8 @@ def: "Any process that activates, maintains or increases the frequency, rate or is_a: GO:0010830 ! regulation of myotube differentiation is_a: GO:0051155 ! positive regulation of striated muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014902 ! myotube differentiation -relationship: positively_regulates GO:0014902 ! myotube differentiation +intersection_of: RO:0002213 GO:0014902 ! positively regulates myotube differentiation +relationship: RO:0002213 GO:0014902 ! positively regulates myotube differentiation [Term] id: GO:0010832 @@ -54859,8 +54700,8 @@ def: "Any process that decreases the frequency, rate or extent of myotube differ is_a: GO:0010830 ! regulation of myotube differentiation is_a: GO:0051154 ! negative regulation of striated muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014902 ! myotube differentiation -relationship: negatively_regulates GO:0014902 ! myotube differentiation +intersection_of: RO:0002212 GO:0014902 ! negatively regulates myotube differentiation +relationship: RO:0002212 GO:0014902 ! negatively regulates myotube differentiation [Term] id: GO:0010837 @@ -54869,8 +54710,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency or extent of keratinocyte proliferation. Keratinocyte proliferation is the multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population." [GOC:dph, GOC:tb] is_a: GO:0050678 ! regulation of epithelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0043616 ! keratinocyte proliferation -relationship: regulates GO:0043616 ! keratinocyte proliferation +intersection_of: RO:0002211 GO:0043616 ! regulates (processual) keratinocyte proliferation +relationship: RO:0002211 GO:0043616 ! regulates (processual) keratinocyte proliferation [Term] id: GO:0010838 @@ -54880,8 +54721,8 @@ def: "Any process that increases the rate, frequency or extent of keratinocyte p is_a: GO:0010837 ! regulation of keratinocyte proliferation is_a: GO:0050679 ! positive regulation of epithelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0043616 ! keratinocyte proliferation -relationship: positively_regulates GO:0043616 ! keratinocyte proliferation +intersection_of: RO:0002213 GO:0043616 ! positively regulates keratinocyte proliferation +relationship: RO:0002213 GO:0043616 ! positively regulates keratinocyte proliferation [Term] id: GO:0010839 @@ -54891,8 +54732,8 @@ def: "Any process that decreases the rate, frequency or extent of keratinocyte p is_a: GO:0010837 ! regulation of keratinocyte proliferation is_a: GO:0050680 ! negative regulation of epithelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0043616 ! keratinocyte proliferation -relationship: negatively_regulates GO:0043616 ! keratinocyte proliferation +intersection_of: RO:0002212 GO:0043616 ! negatively regulates keratinocyte proliferation +relationship: RO:0002212 GO:0043616 ! negatively regulates keratinocyte proliferation [Term] id: GO:0010842 @@ -54903,10 +54744,10 @@ synonym: "retinal lamination" EXACT [GOC:dph, GOC:tb] synonym: "retinal layer formation" EXACT [GOC:dph, GOC:tb] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001781 ! layer of retina +intersection_of: RO:0002297 UBERON:0001781 ! results in formation of anatomical entity layer of retina relationship: part_of GO:0003407 ! neural retina development relationship: part_of GO:0060042 ! retina morphogenesis in camera-type eye -relationship: results_in_formation_of_anatomical_entity UBERON:0001781 ! layer of retina +relationship: RO:0002297 UBERON:0001781 ! results in formation of anatomical entity layer of retina [Term] id: GO:0010876 @@ -54916,8 +54757,8 @@ def: "Any process in which a lipid is transported to, or maintained in, a specif synonym: "lipid localisation" EXACT [GOC:mah] is_a: GO:0033036 ! macromolecule localization intersection_of: GO:0033036 ! macromolecule localization -intersection_of: has_primary_input CHEBI:18059 ! lipid -relationship: has_primary_input CHEBI:18059 ! lipid +intersection_of: RO:0004009 CHEBI:18059 ! has primary input lipid +relationship: RO:0004009 CHEBI:18059 ! has primary input lipid [Term] id: GO:0010893 @@ -54928,8 +54769,8 @@ is_a: GO:0045940 ! positive regulation of steroid metabolic process is_a: GO:0046889 ! positive regulation of lipid biosynthetic process is_a: GO:0050810 ! regulation of steroid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006694 ! steroid biosynthetic process -relationship: positively_regulates GO:0006694 ! steroid biosynthetic process +intersection_of: RO:0002213 GO:0006694 ! positively regulates steroid biosynthetic process +relationship: RO:0002213 GO:0006694 ! positively regulates steroid biosynthetic process [Term] id: GO:0010894 @@ -54940,8 +54781,8 @@ is_a: GO:0045939 ! negative regulation of steroid metabolic process is_a: GO:0050810 ! regulation of steroid biosynthetic process is_a: GO:0051055 ! negative regulation of lipid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006694 ! steroid biosynthetic process -relationship: negatively_regulates GO:0006694 ! steroid biosynthetic process +intersection_of: RO:0002212 GO:0006694 ! negatively regulates steroid biosynthetic process +relationship: RO:0002212 GO:0006694 ! negatively regulates steroid biosynthetic process [Term] id: GO:0010906 @@ -54952,8 +54793,8 @@ synonym: "regulation of glucose metabolism" EXACT [GOC:tb] is_a: GO:0006109 ! regulation of carbohydrate metabolic process is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006006 ! glucose metabolic process -relationship: regulates GO:0006006 ! glucose metabolic process +intersection_of: RO:0002211 GO:0006006 ! regulates (processual) glucose metabolic process +relationship: RO:0002211 GO:0006006 ! regulates (processual) glucose metabolic process [Term] id: GO:0010907 @@ -54965,8 +54806,8 @@ is_a: GO:0010906 ! regulation of glucose metabolic process is_a: GO:0045913 ! positive regulation of carbohydrate metabolic process is_a: GO:0062013 ! positive regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006006 ! glucose metabolic process -relationship: positively_regulates GO:0006006 ! glucose metabolic process +intersection_of: RO:0002213 GO:0006006 ! positively regulates glucose metabolic process +relationship: RO:0002213 GO:0006006 ! positively regulates glucose metabolic process [Term] id: GO:0010927 @@ -54989,8 +54830,8 @@ comment: Note that this term is in the subset of terms that should not be used f subset: gocheck_do_not_annotate is_a: GO:0061082 ! myeloid leukocyte cytokine production intersection_of: GO:0001816 ! cytokine production -intersection_of: occurs_in CL:0000235 ! macrophage -relationship: occurs_in CL:0000235 ! macrophage +intersection_of: BFO:0000066 CL:0000235 ! occurs in macrophage +relationship: BFO:0000066 CL:0000235 ! occurs in macrophage [Term] id: GO:0010935 @@ -54999,8 +54840,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency or extent of macrophage cytokine production. Macrophage cytokine production is the appearance of a chemokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." [GOC:BHF, GOC:rl] is_a: GO:0002718 ! regulation of cytokine production involved in immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0010934 ! macrophage cytokine production -relationship: regulates GO:0010934 ! macrophage cytokine production +intersection_of: RO:0002211 GO:0010934 ! regulates (processual) macrophage cytokine production +relationship: RO:0002211 GO:0010934 ! regulates (processual) macrophage cytokine production [Term] id: GO:0010936 @@ -55010,8 +54851,8 @@ def: "Any process that decreases the rate, frequency or extent of macrophage cyt is_a: GO:0002719 ! negative regulation of cytokine production involved in immune response is_a: GO:0010935 ! regulation of macrophage cytokine production intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0010934 ! macrophage cytokine production -relationship: negatively_regulates GO:0010934 ! macrophage cytokine production +intersection_of: RO:0002212 GO:0010934 ! negatively regulates macrophage cytokine production +relationship: RO:0002212 GO:0010934 ! negatively regulates macrophage cytokine production [Term] id: GO:0010937 @@ -55020,8 +54861,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cytoplasmic microtubule depolymerization." [GOC:dph, GOC:tb] is_a: GO:0031114 ! regulation of microtubule depolymerization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0010938 ! cytoplasmic microtubule depolymerization -relationship: regulates GO:0010938 ! cytoplasmic microtubule depolymerization +intersection_of: RO:0002211 GO:0010938 ! regulates (processual) cytoplasmic microtubule depolymerization +relationship: RO:0002211 GO:0010938 ! regulates (processual) cytoplasmic microtubule depolymerization [Term] id: GO:0010938 @@ -55031,8 +54872,8 @@ def: "The removal of tubulin heterodimers from one or both ends of a cytoplasmic is_a: GO:0007019 ! microtubule depolymerization is_a: GO:0031122 ! cytoplasmic microtubule organization intersection_of: GO:0007019 ! microtubule depolymerization -intersection_of: occurs_in GO:0005737 ! cytoplasm -relationship: occurs_in GO:0005737 ! cytoplasm +intersection_of: BFO:0000066 GO:0005737 ! occurs in cytoplasm +relationship: BFO:0000066 GO:0005737 ! occurs in cytoplasm [Term] id: GO:0010948 @@ -55042,8 +54883,8 @@ def: "Any process that decreases the rate, frequency or extent of a cellular pro is_a: GO:0010564 ! regulation of cell cycle process is_a: GO:0045786 ! negative regulation of cell cycle intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0022402 ! cell cycle process -relationship: negatively_regulates GO:0022402 ! cell cycle process +intersection_of: RO:0002212 GO:0022402 ! negatively regulates cell cycle process +relationship: RO:0002212 GO:0022402 ! negatively regulates cell cycle process created_by: tb creation_date: 2009-04-27T09:53:22Z @@ -55057,8 +54898,8 @@ is_a: GO:0045862 ! positive regulation of proteolysis is_a: GO:0070613 ! regulation of protein processing is_a: GO:1903319 ! positive regulation of protein maturation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0016485 ! protein processing -relationship: positively_regulates GO:0016485 ! protein processing +intersection_of: RO:0002213 GO:0016485 ! positively regulates protein processing +relationship: RO:0002213 GO:0016485 ! positively regulates protein processing created_by: tb creation_date: 2009-04-27T12:09:13Z @@ -55072,8 +54913,8 @@ is_a: GO:0045861 ! negative regulation of proteolysis is_a: GO:0070613 ! regulation of protein processing is_a: GO:1903318 ! negative regulation of protein maturation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0016485 ! protein processing -relationship: negatively_regulates GO:0016485 ! protein processing +intersection_of: RO:0002212 GO:0016485 ! negatively regulates protein processing +relationship: RO:0002212 GO:0016485 ! negatively regulates protein processing created_by: tb creation_date: 2009-04-27T12:10:19Z @@ -55085,8 +54926,8 @@ def: "Any process that modulates the frequency, rate or extent of amino acid imp synonym: "regulation of amino acid import" BROAD [] is_a: GO:1903789 ! regulation of amino acid transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0089718 ! amino acid import across plasma membrane -relationship: regulates GO:0089718 ! amino acid import across plasma membrane +intersection_of: RO:0002211 GO:0089718 ! regulates (processual) amino acid import across plasma membrane +relationship: RO:0002211 GO:0089718 ! regulates (processual) amino acid import across plasma membrane created_by: tb creation_date: 2009-05-06T11:33:12Z @@ -55097,8 +54938,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of metal ion transport. Metal ion transport is the directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:dph, GOC:tb] is_a: GO:0043269 ! regulation of monoatomic ion transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030001 ! metal ion transport -relationship: regulates GO:0030001 ! metal ion transport +intersection_of: RO:0002211 GO:0030001 ! regulates (processual) metal ion transport +relationship: RO:0002211 GO:0030001 ! regulates (processual) metal ion transport created_by: tb creation_date: 2009-05-06T11:40:55Z @@ -55109,8 +54950,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of glucan biosynthesis. Glucan biosynthetic processes are the chemical reactions and pathways resulting in the formation of glucans, polysaccharides consisting only of glucose residues." [GOC:dph, GOC:tb] is_a: GO:0032885 ! regulation of polysaccharide biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009250 ! glucan biosynthetic process -relationship: regulates GO:0009250 ! glucan biosynthetic process +intersection_of: RO:0002211 GO:0009250 ! regulates (processual) glucan biosynthetic process +relationship: RO:0002211 GO:0009250 ! regulates (processual) glucan biosynthetic process created_by: tb creation_date: 2009-05-11T12:17:53Z @@ -55121,8 +54962,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of phosphate transport. Phosphate transport is the directed movement of phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:dph, GOC:tb] is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006817 ! phosphate ion transport -relationship: regulates GO:0006817 ! phosphate ion transport +intersection_of: RO:0002211 GO:0006817 ! regulates (processual) phosphate ion transport +relationship: RO:0002211 GO:0006817 ! regulates (processual) phosphate ion transport created_by: tb creation_date: 2009-05-20T11:42:50Z @@ -55133,9 +54974,9 @@ namespace: biological_process def: "Any process that modulates the rate, frequency or extent of microtubule nucleation. Microtubule nucleation is the 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. Microtubule nucleation usually occurs from a specific site within a cell." [GOC:dph, GOC:tb] is_a: GO:0031113 ! regulation of microtubule polymerization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007020 ! microtubule nucleation -relationship: regulates GO:0007020 ! microtubule nucleation -relationship: regulates GO:0046785 ! microtubule polymerization +intersection_of: RO:0002211 GO:0007020 ! regulates (processual) microtubule nucleation +relationship: RO:0002211 GO:0007020 ! regulates (processual) microtubule nucleation +relationship: RO:0002211 GO:0046785 ! regulates (processual) microtubule polymerization created_by: tb creation_date: 2009-05-20T11:51:21Z @@ -55151,8 +54992,8 @@ is_a: GO:0007018 ! microtubule-based movement is_a: GO:0030705 ! cytoskeleton-dependent intracellular transport is_a: GO:0099111 ! microtubule-based transport intersection_of: GO:0006810 ! transport -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule created_by: tb creation_date: 2009-05-27T10:56:08Z @@ -55167,8 +55008,8 @@ synonym: "regulation of neurite formation" NARROW [GOC:mah] synonym: "regulation of neurite growth" NARROW [GOC:mah] is_a: GO:0120035 ! regulation of plasma membrane bounded cell projection organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0031175 ! neuron projection development -relationship: regulates GO:0031175 ! neuron projection development +intersection_of: RO:0002211 GO:0031175 ! regulates (processual) neuron projection development +relationship: RO:0002211 GO:0031175 ! regulates (processual) neuron projection development created_by: tb creation_date: 2009-06-01T10:44:45Z @@ -55184,8 +55025,8 @@ synonym: "positive regulation of neurite growth" NARROW [GOC:mah] is_a: GO:0010975 ! regulation of neuron projection development is_a: GO:0031346 ! positive regulation of cell projection organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0031175 ! neuron projection development -relationship: positively_regulates GO:0031175 ! neuron projection development +intersection_of: RO:0002213 GO:0031175 ! positively regulates neuron projection development +relationship: RO:0002213 GO:0031175 ! positively regulates neuron projection development created_by: tb creation_date: 2009-06-01T10:46:44Z @@ -55202,8 +55043,8 @@ synonym: "negative regulation of neurite growth" NARROW [GOC:mah] is_a: GO:0010975 ! regulation of neuron projection development is_a: GO:0031345 ! negative regulation of cell projection organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0031175 ! neuron projection development -relationship: negatively_regulates GO:0031175 ! neuron projection development +intersection_of: RO:0002212 GO:0031175 ! negatively regulates neuron projection development +relationship: RO:0002212 GO:0031175 ! negatively regulates neuron projection development created_by: tb creation_date: 2009-06-01T10:47:42Z @@ -55246,7 +55087,7 @@ subset: goslim_candida subset: goslim_flybase_ribbon subset: goslim_yeast xref: Wikipedia:Endomembrane_system -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: has_part GO:0005773 ! vacuole relationship: has_part GO:0005886 ! plasma membrane relationship: part_of CL:0000000 ! cell @@ -55270,9 +55111,9 @@ def: "The process aimed at the progression of an astrocyte over time, from initi synonym: "astrocyte cell development" EXACT [] is_a: GO:0021782 ! glial cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000127 ! astrocyte +intersection_of: RO:0002296 CL:0000127 ! results in development of astrocyte relationship: part_of GO:0048708 ! astrocyte differentiation -relationship: results_in_development_of CL:0000127 ! astrocyte +relationship: RO:0002296 CL:0000127 ! results in development of astrocyte [Term] id: GO:0014003 @@ -55282,9 +55123,9 @@ def: "The process aimed at the progression of an oligodendrocyte over time, from synonym: "oligodendrocyte cell development" EXACT [] is_a: GO:0021782 ! glial cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000128 ! oligodendrocyte +intersection_of: RO:0002296 CL:0000128 ! results in development of oligodendrocyte relationship: part_of GO:0048709 ! oligodendrocyte differentiation -relationship: results_in_development_of CL:0000128 ! oligodendrocyte +relationship: RO:0002296 CL:0000128 ! results in development of oligodendrocyte [Term] id: GO:0014009 @@ -55294,9 +55135,9 @@ def: "The multiplication or reproduction of glial cells by cell division, result synonym: "glia proliferation" EXACT [] is_a: GO:0008283 ! cell population proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000125 ! glial cell -relationship: acts_on_population_of CL:0000125 ! glial cell +intersection_of: RO:0012003 CL:0000125 ! acts on population of glial cell relationship: part_of GO:0042063 ! gliogenesis +relationship: RO:0012003 CL:0000125 ! acts on population of glial cell [Term] id: GO:0014010 @@ -55305,8 +55146,8 @@ namespace: biological_process def: "The multiplication or reproduction of Schwann cells, resulting in the expansion of their population. Schwann cells are a type of glial cell in the peripheral nervous system." [GOC:ef, ISBN:0878932585] is_a: GO:0014009 ! glial cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000218 ! myelinating Schwann cell -relationship: acts_on_population_of CL:0000218 ! myelinating Schwann cell +intersection_of: RO:0012003 CL:0000218 ! acts on population of myelinating Schwann cell +relationship: RO:0012003 CL:0000218 ! acts on population of myelinating Schwann cell [Term] id: GO:0014013 @@ -55315,8 +55156,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of gliogenesis, the formation of mature glia." [GOC:ef] is_a: GO:0050767 ! regulation of neurogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042063 ! gliogenesis -relationship: regulates GO:0042063 ! gliogenesis +intersection_of: RO:0002211 GO:0042063 ! regulates (processual) gliogenesis +relationship: RO:0002211 GO:0042063 ! regulates (processual) gliogenesis [Term] id: GO:0014014 @@ -55330,8 +55171,8 @@ synonym: "inhibition of gliogenesis" NARROW [] is_a: GO:0014013 ! regulation of gliogenesis is_a: GO:0050768 ! negative regulation of neurogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042063 ! gliogenesis -relationship: negatively_regulates GO:0042063 ! gliogenesis +intersection_of: RO:0002212 GO:0042063 ! negatively regulates gliogenesis +relationship: RO:0002212 GO:0042063 ! negatively regulates gliogenesis [Term] id: GO:0014015 @@ -55346,8 +55187,8 @@ synonym: "upregulation of gliogenesis" EXACT [] is_a: GO:0014013 ! regulation of gliogenesis is_a: GO:0050769 ! positive regulation of neurogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042063 ! gliogenesis -relationship: positively_regulates GO:0042063 ! gliogenesis +intersection_of: RO:0002213 GO:0042063 ! positively regulates gliogenesis +relationship: RO:0002213 GO:0042063 ! positively regulates gliogenesis [Term] id: GO:0014016 @@ -55356,9 +55197,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a neuroblast. There are at least four stages through which the pluripotent cells of epiblast or blastula become neuroblasts." [GOC:ef, ISBN:0878932585] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000031 ! neuroblast (sensu Vertebrata) +intersection_of: RO:0002315 CL:0000031 ! results in acquisition of features of neuroblast (sensu Vertebrata) relationship: part_of GO:0048699 ! generation of neurons -relationship: results_in_acquisition_of_features_of CL:0000031 ! neuroblast (sensu Vertebrata) +relationship: RO:0002315 CL:0000031 ! results in acquisition of features of neuroblast (sensu Vertebrata) [Term] id: GO:0014019 @@ -55367,9 +55208,9 @@ namespace: biological_process def: "The process aimed at the progression of a neuroblast over time, from initial commitment of the cell to a specific state, to the mature neuroblast. It does not include processes where the neuroblast turns into a glial cell or a neuron." [GOC:ef, ISBN:0878932585] is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000031 ! neuroblast (sensu Vertebrata) +intersection_of: RO:0002296 CL:0000031 ! results in development of neuroblast (sensu Vertebrata) relationship: part_of GO:0014016 ! neuroblast differentiation -relationship: results_in_development_of CL:0000031 ! neuroblast (sensu Vertebrata) +relationship: RO:0002296 CL:0000031 ! results in development of neuroblast (sensu Vertebrata) [Term] id: GO:0014020 @@ -55390,11 +55231,11 @@ namespace: biological_process def: "The formation of a solid rod of neurectoderm derived from the neural keel. The neural rod is roughly circular in cross section. Neural rod formation occurs during primary neurulation in teleosts." [GOC:dh, GOC:ef] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005068 ! neural rod +intersection_of: RO:0002297 UBERON:0005068 ! results in formation of anatomical entity neural rod relationship: in_taxon NCBITaxon:32443 {all_only="true"} ! Teleostei -relationship: only_in_taxon NCBITaxon:32443 ! Teleostei relationship: part_of GO:0014020 ! primary neural tube formation -relationship: results_in_formation_of_anatomical_entity UBERON:0005068 ! neural rod +relationship: RO:0002160 NCBITaxon:32443 ! only in taxon Teleostei +relationship: RO:0002297 UBERON:0005068 ! results in formation of anatomical entity neural rod [Term] id: GO:0014025 @@ -55403,9 +55244,9 @@ namespace: biological_process def: "The formation of a thickened region of the neurectoderm that is roughly triangular in cross section. The neural keel develops from the neural plate and develops into the neural rod. Neural keel formation occurs during primary neurulation in teleosts." [GOC:dh, GOC:ef] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0007135 ! neural keel +intersection_of: RO:0002297 UBERON:0007135 ! results in formation of anatomical entity neural keel relationship: part_of GO:0014023 ! neural rod formation -relationship: results_in_formation_of_anatomical_entity UBERON:0007135 ! neural keel +relationship: RO:0002297 UBERON:0007135 ! results in formation of anatomical entity neural keel [Term] id: GO:0014028 @@ -55414,10 +55255,10 @@ namespace: biological_process def: "The formation of the notochord from the chordamesoderm. The notochord is composed of large cells packed within a firm connective tissue sheath and is found in all chordates at the ventral surface of the neural tube. In vertebrates, the notochord contributes to the vertebral column." [GOC:dh, GOC:ef] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002328 ! notochord +intersection_of: RO:0002297 UBERON:0002328 ! results in formation of anatomical entity notochord relationship: part_of GO:0007399 ! nervous system development relationship: part_of GO:0048570 ! notochord morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002328 ! notochord +relationship: RO:0002297 UBERON:0002328 ! results in formation of anatomical entity notochord [Term] id: GO:0014029 @@ -55427,9 +55268,9 @@ def: "The formation of the specialized region of ectoderm between the neural ect is_a: GO:0001837 ! epithelial to mesenchymal transition is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002342 ! neural crest +intersection_of: RO:0002297 UBERON:0002342 ! results in formation of anatomical entity neural crest relationship: part_of GO:0043009 ! chordate embryonic development -relationship: results_in_formation_of_anatomical_entity UBERON:0002342 ! neural crest +relationship: RO:0002297 UBERON:0002342 ! results in formation of anatomical entity neural crest [Term] id: GO:0014031 @@ -55438,9 +55279,9 @@ namespace: biological_process def: "The process aimed at the progression of a mesenchymal cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell." [GOC:dh, GOC:ef] is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0008019 ! mesenchymal cell +intersection_of: RO:0002296 CL:0008019 ! results in development of mesenchymal cell relationship: part_of GO:0048762 ! mesenchymal cell differentiation -relationship: results_in_development_of CL:0008019 ! mesenchymal cell +relationship: RO:0002296 CL:0008019 ! results in development of mesenchymal cell [Term] id: GO:0014032 @@ -55449,9 +55290,9 @@ namespace: biological_process def: "The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell." [GOC:dh, GOC:ef] is_a: GO:0048864 ! stem cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0011012 ! neural crest cell +intersection_of: RO:0002296 CL:0011012 ! results in development of neural crest cell relationship: part_of GO:0014033 ! neural crest cell differentiation -relationship: results_in_development_of CL:0011012 ! neural crest cell +relationship: RO:0002296 CL:0011012 ! results in development of neural crest cell [Term] id: GO:0014033 @@ -55461,8 +55302,8 @@ def: "The process in which a relatively unspecialized cell acquires specialized is_a: GO:0048762 ! mesenchymal cell differentiation is_a: GO:0048863 ! stem cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000333 ! migratory neural crest cell -relationship: results_in_acquisition_of_features_of CL:0000333 ! migratory neural crest cell +intersection_of: RO:0002315 CL:0000333 ! results in acquisition of features of migratory neural crest cell +relationship: RO:0002315 CL:0000333 ! results in acquisition of features of migratory neural crest cell [Term] id: GO:0014037 @@ -55471,9 +55312,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized features of a Schwann cell. Schwann cells are found in the peripheral nervous system, where they insulate neurons and axons, and regulate the environment in which neurons function." [GOC:ef] is_a: GO:0010001 ! glial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000218 ! myelinating Schwann cell +intersection_of: RO:0002315 CL:0000218 ! results in acquisition of features of myelinating Schwann cell relationship: part_of GO:0007422 ! peripheral nervous system development -relationship: results_in_acquisition_of_features_of CL:0000218 ! myelinating Schwann cell +relationship: RO:0002315 CL:0000218 ! results in acquisition of features of myelinating Schwann cell [Term] id: GO:0014038 @@ -55482,8 +55323,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of Schwann cell differentiation." [GOC:ef] is_a: GO:0045685 ! regulation of glial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014037 ! Schwann cell differentiation -relationship: regulates GO:0014037 ! Schwann cell differentiation +intersection_of: RO:0002211 GO:0014037 ! regulates (processual) Schwann cell differentiation +relationship: RO:0002211 GO:0014037 ! regulates (processual) Schwann cell differentiation [Term] id: GO:0014039 @@ -55497,8 +55338,8 @@ synonym: "inhibition of Schwann cell differentiation" NARROW [] is_a: GO:0014038 ! regulation of Schwann cell differentiation is_a: GO:0045686 ! negative regulation of glial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014037 ! Schwann cell differentiation -relationship: negatively_regulates GO:0014037 ! Schwann cell differentiation +intersection_of: RO:0002212 GO:0014037 ! negatively regulates Schwann cell differentiation +relationship: RO:0002212 GO:0014037 ! negatively regulates Schwann cell differentiation [Term] id: GO:0014040 @@ -55513,8 +55354,8 @@ synonym: "upregulation of Schwann cell differentiation" EXACT [] is_a: GO:0014038 ! regulation of Schwann cell differentiation is_a: GO:0045687 ! positive regulation of glial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014037 ! Schwann cell differentiation -relationship: positively_regulates GO:0014037 ! Schwann cell differentiation +intersection_of: RO:0002213 GO:0014037 ! positively regulates Schwann cell differentiation +relationship: RO:0002213 GO:0014037 ! positively regulates Schwann cell differentiation [Term] id: GO:0014041 @@ -55524,9 +55365,9 @@ def: "Any process that modulates the frequency, rate or extent of neuron maturat is_a: GO:0045664 ! regulation of neuron differentiation is_a: GO:1903429 ! regulation of cell maturation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042551 ! neuron maturation -relationship: regulates GO:0030182 ! neuron differentiation -relationship: regulates GO:0042551 ! neuron maturation +intersection_of: RO:0002211 GO:0042551 ! regulates (processual) neuron maturation +relationship: RO:0002211 GO:0030182 ! regulates (processual) neuron differentiation +relationship: RO:0002211 GO:0042551 ! regulates (processual) neuron maturation [Term] id: GO:0014042 @@ -55541,8 +55382,8 @@ synonym: "upregulation of neuron maturation" EXACT [] is_a: GO:0014041 ! regulation of neuron maturation is_a: GO:1903431 ! positive regulation of cell maturation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042551 ! neuron maturation -relationship: positively_regulates GO:0042551 ! neuron maturation +intersection_of: RO:0002213 GO:0042551 ! positively regulates neuron maturation +relationship: RO:0002213 GO:0042551 ! positively regulates neuron maturation [Term] id: GO:0014043 @@ -55556,8 +55397,8 @@ synonym: "inhibition of neuron maturation" NARROW [] is_a: GO:0014041 ! regulation of neuron maturation is_a: GO:1903430 ! negative regulation of cell maturation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042551 ! neuron maturation -relationship: negatively_regulates GO:0042551 ! neuron maturation +intersection_of: RO:0002212 GO:0042551 ! negatively regulates neuron maturation +relationship: RO:0002212 GO:0042551 ! negatively regulates neuron maturation [Term] id: GO:0014044 @@ -55566,9 +55407,9 @@ namespace: biological_process def: "The process aimed at the progression of a Schwann cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. Schwann cells are found in the peripheral nervous system, where they insulate neurons and axons, and regulate the environment in which neurons function." [GOC:dgh, GOC:ef] is_a: GO:0021782 ! glial cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000218 ! myelinating Schwann cell +intersection_of: RO:0002296 CL:0000218 ! results in development of myelinating Schwann cell relationship: part_of GO:0014037 ! Schwann cell differentiation -relationship: results_in_development_of CL:0000218 ! myelinating Schwann cell +relationship: RO:0002296 CL:0000218 ! results in development of myelinating Schwann cell [Term] id: GO:0014046 @@ -55578,8 +55419,8 @@ def: "The regulated release of dopamine by a cell. Dopamine is a catecholamine a is_a: GO:0015872 ! dopamine transport is_a: GO:0023061 ! signal release intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:59905 ! dopaminium(1+) -relationship: has_primary_input CHEBI:59905 ! dopaminium(1+) +intersection_of: RO:0004009 CHEBI:59905 ! has primary input dopaminium(1+) +relationship: RO:0004009 CHEBI:59905 ! has primary input dopaminium(1+) [Term] id: GO:0014047 @@ -55591,8 +55432,8 @@ is_a: GO:0032940 ! secretion by cell is_a: GO:0046942 ! carboxylic acid transport is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:14321 ! glutamate(1-) -relationship: has_primary_input CHEBI:14321 ! glutamate(1-) +intersection_of: RO:0004009 CHEBI:14321 ! has primary input glutamate(1-) +relationship: RO:0004009 CHEBI:14321 ! has primary input glutamate(1-) [Term] id: GO:0014048 @@ -55602,8 +55443,8 @@ def: "Any process that modulates the frequency, rate or extent of the controlled is_a: GO:0051955 ! regulation of amino acid transport is_a: GO:1903530 ! regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014047 ! glutamate secretion -relationship: regulates GO:0014047 ! glutamate secretion +intersection_of: RO:0002211 GO:0014047 ! regulates (processual) glutamate secretion +relationship: RO:0002211 GO:0014047 ! regulates (processual) glutamate secretion [Term] id: GO:0014049 @@ -55619,8 +55460,8 @@ is_a: GO:0014048 ! regulation of glutamate secretion is_a: GO:0051957 ! positive regulation of amino acid transport is_a: GO:1903532 ! positive regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014047 ! glutamate secretion -relationship: positively_regulates GO:0014047 ! glutamate secretion +intersection_of: RO:0002213 GO:0014047 ! positively regulates glutamate secretion +relationship: RO:0002213 GO:0014047 ! positively regulates glutamate secretion [Term] id: GO:0014050 @@ -55635,8 +55476,8 @@ is_a: GO:0014048 ! regulation of glutamate secretion is_a: GO:0051956 ! negative regulation of amino acid transport is_a: GO:1903531 ! negative regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014047 ! glutamate secretion -relationship: negatively_regulates GO:0014047 ! glutamate secretion +intersection_of: RO:0002212 GO:0014047 ! negatively regulates glutamate secretion +relationship: RO:0002212 GO:0014047 ! negatively regulates glutamate secretion [Term] id: GO:0014051 @@ -55647,8 +55488,8 @@ synonym: "GABA secretion" EXACT [] is_a: GO:0015812 ! gamma-aminobutyric acid transport is_a: GO:0046717 ! acid secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:59888 ! gamma-aminobutyric acid zwitterion -relationship: has_primary_input CHEBI:59888 ! gamma-aminobutyric acid zwitterion +intersection_of: RO:0004009 CHEBI:59888 ! has primary input gamma-aminobutyric acid zwitterion +relationship: RO:0004009 CHEBI:59888 ! has primary input gamma-aminobutyric acid zwitterion [Term] id: GO:0014052 @@ -55659,8 +55500,8 @@ synonym: "regulation of GABA secretion" EXACT [] is_a: GO:0051046 ! regulation of secretion is_a: GO:0051955 ! regulation of amino acid transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014051 ! gamma-aminobutyric acid secretion -relationship: regulates GO:0014051 ! gamma-aminobutyric acid secretion +intersection_of: RO:0002211 GO:0014051 ! regulates (processual) gamma-aminobutyric acid secretion +relationship: RO:0002211 GO:0014051 ! regulates (processual) gamma-aminobutyric acid secretion [Term] id: GO:0014053 @@ -55676,8 +55517,8 @@ is_a: GO:0014052 ! regulation of gamma-aminobutyric acid secretion is_a: GO:0051048 ! negative regulation of secretion is_a: GO:0051956 ! negative regulation of amino acid transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014051 ! gamma-aminobutyric acid secretion -relationship: negatively_regulates GO:0014051 ! gamma-aminobutyric acid secretion +intersection_of: RO:0002212 GO:0014051 ! negatively regulates gamma-aminobutyric acid secretion +relationship: RO:0002212 GO:0014051 ! negatively regulates gamma-aminobutyric acid secretion [Term] id: GO:0014054 @@ -55694,8 +55535,8 @@ is_a: GO:0014052 ! regulation of gamma-aminobutyric acid secretion is_a: GO:0051047 ! positive regulation of secretion is_a: GO:0051957 ! positive regulation of amino acid transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014051 ! gamma-aminobutyric acid secretion -relationship: positively_regulates GO:0014051 ! gamma-aminobutyric acid secretion +intersection_of: RO:0002213 GO:0014051 ! positively regulates gamma-aminobutyric acid secretion +relationship: RO:0002213 GO:0014051 ! positively regulates gamma-aminobutyric acid secretion [Term] id: GO:0014055 @@ -55717,9 +55558,9 @@ is_a: GO:0032222 ! regulation of synaptic transmission, cholinergic is_a: GO:0046928 ! regulation of neurotransmitter secretion is_a: GO:0051952 ! regulation of amine transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014055 ! acetylcholine secretion, neurotransmission -relationship: regulates GO:0007271 ! synaptic transmission, cholinergic -relationship: regulates GO:0014055 ! acetylcholine secretion, neurotransmission +intersection_of: RO:0002211 GO:0014055 ! regulates (processual) acetylcholine secretion, neurotransmission +relationship: RO:0002211 GO:0007271 ! regulates (processual) synaptic transmission, cholinergic +relationship: RO:0002211 GO:0014055 ! regulates (processual) acetylcholine secretion, neurotransmission [Term] id: GO:0014057 @@ -55736,9 +55577,9 @@ is_a: GO:0014056 ! regulation of acetylcholine secretion, neurotransmission is_a: GO:0032224 ! positive regulation of synaptic transmission, cholinergic is_a: GO:0051954 ! positive regulation of amine transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014055 ! acetylcholine secretion, neurotransmission -relationship: positively_regulates GO:0007271 ! synaptic transmission, cholinergic -relationship: positively_regulates GO:0014055 ! acetylcholine secretion, neurotransmission +intersection_of: RO:0002213 GO:0014055 ! positively regulates acetylcholine secretion, neurotransmission +relationship: RO:0002213 GO:0007271 ! positively regulates synaptic transmission, cholinergic +relationship: RO:0002213 GO:0014055 ! positively regulates acetylcholine secretion, neurotransmission [Term] id: GO:0014058 @@ -55754,9 +55595,9 @@ is_a: GO:0032223 ! negative regulation of synaptic transmission, cholinergic is_a: GO:0046929 ! negative regulation of neurotransmitter secretion is_a: GO:0051953 ! negative regulation of amine transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014055 ! acetylcholine secretion, neurotransmission -relationship: negatively_regulates GO:0007271 ! synaptic transmission, cholinergic -relationship: negatively_regulates GO:0014055 ! acetylcholine secretion, neurotransmission +intersection_of: RO:0002212 GO:0014055 ! negatively regulates acetylcholine secretion, neurotransmission +relationship: RO:0002212 GO:0007271 ! negatively regulates synaptic transmission, cholinergic +relationship: RO:0002212 GO:0014055 ! negatively regulates acetylcholine secretion, neurotransmission [Term] id: GO:0014059 @@ -55765,8 +55606,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the regulated release of dopamine." [GOC:ef] is_a: GO:1903530 ! regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014046 ! dopamine secretion -relationship: regulates GO:0014046 ! dopamine secretion +intersection_of: RO:0002211 GO:0014046 ! regulates (processual) dopamine secretion +relationship: RO:0002211 GO:0014046 ! regulates (processual) dopamine secretion [Term] id: GO:0014060 @@ -55776,8 +55617,8 @@ def: "Any process that modulates the frequency, rate or extent of the regulated synonym: "regulation of adrenaline secretion" EXACT [] is_a: GO:0051046 ! regulation of secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048242 ! epinephrine secretion -relationship: regulates GO:0048242 ! epinephrine secretion +intersection_of: RO:0002211 GO:0048242 ! regulates (processual) epinephrine secretion +relationship: RO:0002211 GO:0048242 ! regulates (processual) epinephrine secretion [Term] id: GO:0014061 @@ -55787,8 +55628,8 @@ def: "Any process that modulates the frequency, rate or extent of the regulated synonym: "regulation of noradrenaline secretion" EXACT [] is_a: GO:0050433 ! regulation of catecholamine secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048243 ! norepinephrine secretion -relationship: regulates GO:0048243 ! norepinephrine secretion +intersection_of: RO:0002211 GO:0048243 ! regulates (processual) norepinephrine secretion +relationship: RO:0002211 GO:0048243 ! regulates (processual) norepinephrine secretion [Term] id: GO:0014062 @@ -55799,8 +55640,8 @@ synonym: "regulation of serotonin release" RELATED [GOC:tb] is_a: GO:0043269 ! regulation of monoatomic ion transport is_a: GO:1903530 ! regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001820 ! serotonin secretion -relationship: regulates GO:0001820 ! serotonin secretion +intersection_of: RO:0002211 GO:0001820 ! regulates (processual) serotonin secretion +relationship: RO:0002211 GO:0001820 ! regulates (processual) serotonin secretion [Term] id: GO:0014063 @@ -55816,8 +55657,8 @@ is_a: GO:0014062 ! regulation of serotonin secretion is_a: GO:0043271 ! negative regulation of monoatomic ion transport is_a: GO:1903531 ! negative regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001820 ! serotonin secretion -relationship: negatively_regulates GO:0001820 ! serotonin secretion +intersection_of: RO:0002212 GO:0001820 ! negatively regulates serotonin secretion +relationship: RO:0002212 GO:0001820 ! negatively regulates serotonin secretion [Term] id: GO:0014064 @@ -55834,8 +55675,8 @@ is_a: GO:0014062 ! regulation of serotonin secretion is_a: GO:0043270 ! positive regulation of monoatomic ion transport is_a: GO:1903532 ! positive regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001820 ! serotonin secretion -relationship: positively_regulates GO:0001820 ! serotonin secretion +intersection_of: RO:0002213 GO:0001820 ! positively regulates serotonin secretion +relationship: RO:0002213 GO:0001820 ! positively regulates serotonin secretion [Term] id: GO:0014070 @@ -55845,8 +55686,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to organic cyclic substance" EXACT [GOC:mah] is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:33832 ! organic cyclic compound -relationship: has_primary_input CHEBI:33832 ! organic cyclic compound +intersection_of: RO:0004009 CHEBI:33832 ! has primary input organic cyclic compound +relationship: RO:0004009 CHEBI:33832 ! has primary input organic cyclic compound [Term] id: GO:0014074 @@ -55854,11 +55695,11 @@ name: response to purine-containing compound namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a purine-containing compound stimulus." [GOC:ef] synonym: "response to purine" RELATED [] -is_a: GO:0010243 ! response to organonitrogen compound is_a: GO:0014070 ! response to organic cyclic compound +is_a: GO:1901698 ! response to nitrogen compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:26401 ! purines -relationship: has_primary_input CHEBI:26401 ! purines +intersection_of: RO:0004009 CHEBI:26401 ! has primary input purines +relationship: RO:0004009 CHEBI:26401 ! has primary input purines [Term] id: GO:0014075 @@ -55866,10 +55707,10 @@ name: response to amine namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amine stimulus. An amine is a compound formally derived from ammonia by replacing one, two or three hydrogen atoms by hydrocarbyl groups." [GOC:ef] synonym: "response to amine stimulus" EXACT [GOC:dos] -is_a: GO:0010243 ! response to organonitrogen compound +is_a: GO:1901698 ! response to nitrogen compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:32952 ! amine -relationship: has_primary_input CHEBI:32952 ! amine +intersection_of: RO:0004009 CHEBI:32952 ! has primary input amine +relationship: RO:0004009 CHEBI:32952 ! has primary input amine [Term] id: GO:0014706 @@ -55878,8 +55719,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a striated muscle over time, from its formation to the mature structure. Striated muscle contain fibers that are divided by transverse bands into striations, and cardiac and skeletal muscle are types of striated muscle. Skeletal muscle myoblasts fuse to form myotubes and eventually multinucleated muscle fibers. The fusion of cardiac cells is very rare and can only form binucleate cells." [CL:0000737, GOC:dph, GOC:mtg_muscle] is_a: GO:0060537 ! muscle tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002036 ! striated muscle tissue -relationship: results_in_development_of UBERON:0002036 ! striated muscle tissue +intersection_of: RO:0002296 UBERON:0002036 ! results in development of striated muscle tissue +relationship: RO:0002296 UBERON:0002036 ! results in development of striated muscle tissue [Term] id: GO:0014707 @@ -55889,8 +55730,8 @@ def: "The process whose specific outcome is the progression of the branchiomeric is_a: GO:0007517 ! muscle organ development is_a: GO:0007519 ! skeletal muscle tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004164 ! branchiomeric muscle -relationship: results_in_development_of UBERON:0004164 ! branchiomeric muscle +intersection_of: RO:0002296 UBERON:0004164 ! results in development of branchiomeric muscle +relationship: RO:0002296 UBERON:0004164 ! results in development of branchiomeric muscle [Term] id: GO:0014708 @@ -55899,8 +55740,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of somitomeric trunk muscle development." [GOC:mtg_muscle] is_a: GO:0048634 ! regulation of muscle organ development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002075 ! somitomeric trunk muscle development -relationship: regulates GO:0002075 ! somitomeric trunk muscle development +intersection_of: RO:0002211 GO:0002075 ! regulates (processual) somitomeric trunk muscle development +relationship: RO:0002211 GO:0002075 ! regulates (processual) somitomeric trunk muscle development [Term] id: GO:0014709 @@ -55910,8 +55751,8 @@ def: "Any process that activates, maintains or increases the frequency, rate or is_a: GO:0014708 ! regulation of somitomeric trunk muscle development is_a: GO:0048636 ! positive regulation of muscle organ development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002075 ! somitomeric trunk muscle development -relationship: positively_regulates GO:0002075 ! somitomeric trunk muscle development +intersection_of: RO:0002213 GO:0002075 ! positively regulates somitomeric trunk muscle development +relationship: RO:0002213 GO:0002075 ! positively regulates somitomeric trunk muscle development [Term] id: GO:0014710 @@ -55921,8 +55762,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0014708 ! regulation of somitomeric trunk muscle development is_a: GO:0048635 ! negative regulation of muscle organ development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002075 ! somitomeric trunk muscle development -relationship: negatively_regulates GO:0002075 ! somitomeric trunk muscle development +intersection_of: RO:0002212 GO:0002075 ! negatively regulates somitomeric trunk muscle development +relationship: RO:0002212 GO:0002075 ! negatively regulates somitomeric trunk muscle development [Term] id: GO:0014711 @@ -55931,8 +55772,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of branchiomeric skeletal muscle development. Branchiomeric skeletal muscle development is the process whose specific outcome is the progression of the branchiomeric skeletal muscle over time, from its formation to the mature structure." [GOC:mtg_muscle] is_a: GO:0048641 ! regulation of skeletal muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014707 ! branchiomeric skeletal muscle development -relationship: regulates GO:0014707 ! branchiomeric skeletal muscle development +intersection_of: RO:0002211 GO:0014707 ! regulates (processual) branchiomeric skeletal muscle development +relationship: RO:0002211 GO:0014707 ! regulates (processual) branchiomeric skeletal muscle development [Term] id: GO:0014712 @@ -55942,8 +55783,8 @@ def: "Any process that activates, maintains or increases the frequency, rate or is_a: GO:0014711 ! regulation of branchiomeric skeletal muscle development is_a: GO:0048643 ! positive regulation of skeletal muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014707 ! branchiomeric skeletal muscle development -relationship: positively_regulates GO:0014707 ! branchiomeric skeletal muscle development +intersection_of: RO:0002213 GO:0014707 ! positively regulates branchiomeric skeletal muscle development +relationship: RO:0002213 GO:0014707 ! positively regulates branchiomeric skeletal muscle development [Term] id: GO:0014713 @@ -55953,8 +55794,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0014711 ! regulation of branchiomeric skeletal muscle development is_a: GO:0048642 ! negative regulation of skeletal muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014707 ! branchiomeric skeletal muscle development -relationship: negatively_regulates GO:0014707 ! branchiomeric skeletal muscle development +intersection_of: RO:0002212 GO:0014707 ! negatively regulates branchiomeric skeletal muscle development +relationship: RO:0002212 GO:0014707 ! negatively regulates branchiomeric skeletal muscle development [Term] id: GO:0014725 @@ -55963,8 +55804,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of extraocular skeletal muscle development. Extraocular skeletal muscle development is the process whose specific outcome is the progression of the extraocular skeletal muscle over time, from its formation to the mature structure. The extraocular muscle is derived from cranial mesoderm and controls eye movements. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle." [GOC:mtg_muscle] is_a: GO:0048641 ! regulation of skeletal muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002074 ! extraocular skeletal muscle development -relationship: regulates GO:0002074 ! extraocular skeletal muscle development +intersection_of: RO:0002211 GO:0002074 ! regulates (processual) extraocular skeletal muscle development +relationship: RO:0002211 GO:0002074 ! regulates (processual) extraocular skeletal muscle development [Term] id: GO:0014726 @@ -55974,8 +55815,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0014725 ! regulation of extraocular skeletal muscle development is_a: GO:0048642 ! negative regulation of skeletal muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002074 ! extraocular skeletal muscle development -relationship: negatively_regulates GO:0002074 ! extraocular skeletal muscle development +intersection_of: RO:0002212 GO:0002074 ! negatively regulates extraocular skeletal muscle development +relationship: RO:0002212 GO:0002074 ! negatively regulates extraocular skeletal muscle development [Term] id: GO:0014727 @@ -55985,8 +55826,8 @@ def: "Any process that activates, maintains or increases the frequency, rate or is_a: GO:0014725 ! regulation of extraocular skeletal muscle development is_a: GO:0048643 ! positive regulation of skeletal muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002074 ! extraocular skeletal muscle development -relationship: positively_regulates GO:0002074 ! extraocular skeletal muscle development +intersection_of: RO:0002213 GO:0002074 ! positively regulates extraocular skeletal muscle development +relationship: RO:0002213 GO:0002074 ! positively regulates extraocular skeletal muscle development [Term] id: GO:0014733 @@ -55996,8 +55837,8 @@ def: "Any process in which skeletal muscle adapts, with consequent modifications synonym: "regulation of skeletal muscle plasticity" RELATED [] is_a: GO:0043502 ! regulation of muscle adaptation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0043501 ! skeletal muscle adaptation -relationship: regulates GO:0043501 ! skeletal muscle adaptation +intersection_of: RO:0002211 GO:0043501 ! regulates (processual) skeletal muscle adaptation +relationship: RO:0002211 GO:0043501 ! regulates (processual) skeletal muscle adaptation [Term] id: GO:0014734 @@ -56007,8 +55848,8 @@ def: "The enlargement or overgrowth of all or part of an organ due to an increas is_a: GO:0014897 ! striated muscle hypertrophy is_a: GO:0043501 ! skeletal muscle adaptation intersection_of: GO:0014896 ! muscle hypertrophy -intersection_of: occurs_in UBERON:0001134 ! skeletal muscle tissue -relationship: occurs_in UBERON:0001134 ! skeletal muscle tissue +intersection_of: BFO:0000066 UBERON:0001134 ! occurs in skeletal muscle tissue +relationship: BFO:0000066 UBERON:0001134 ! occurs in skeletal muscle tissue [Term] id: GO:0014741 @@ -56018,8 +55859,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate, or exten is_a: GO:0014743 ! regulation of muscle hypertrophy is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014896 ! muscle hypertrophy -relationship: negatively_regulates GO:0014896 ! muscle hypertrophy +intersection_of: RO:0002212 GO:0014896 ! negatively regulates muscle hypertrophy +relationship: RO:0002212 GO:0014896 ! negatively regulates muscle hypertrophy [Term] id: GO:0014742 @@ -56029,8 +55870,8 @@ def: "Any process that activates or increases the frequency, rate or extent of m is_a: GO:0014743 ! regulation of muscle hypertrophy is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014896 ! muscle hypertrophy -relationship: positively_regulates GO:0014896 ! muscle hypertrophy +intersection_of: RO:0002213 GO:0014896 ! positively regulates muscle hypertrophy +relationship: RO:0002213 GO:0014896 ! positively regulates muscle hypertrophy [Term] id: GO:0014743 @@ -56039,8 +55880,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of muscle hypertrophy." [GOC:mtg_muscle] is_a: GO:0090257 ! regulation of muscle system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014896 ! muscle hypertrophy -relationship: regulates GO:0014896 ! muscle hypertrophy +intersection_of: RO:0002211 GO:0014896 ! regulates (processual) muscle hypertrophy +relationship: RO:0002211 GO:0014896 ! regulates (processual) muscle hypertrophy [Term] id: GO:0014744 @@ -56052,8 +55893,8 @@ is_a: GO:0043502 ! regulation of muscle adaptation is_a: GO:0048584 ! positive regulation of response to stimulus is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0043500 ! muscle adaptation -relationship: positively_regulates GO:0043500 ! muscle adaptation +intersection_of: RO:0002213 GO:0043500 ! positively regulates muscle adaptation +relationship: RO:0002213 GO:0043500 ! positively regulates muscle adaptation [Term] id: GO:0014745 @@ -56065,8 +55906,8 @@ is_a: GO:0043502 ! regulation of muscle adaptation is_a: GO:0048585 ! negative regulation of response to stimulus is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0043500 ! muscle adaptation -relationship: negatively_regulates GO:0043500 ! muscle adaptation +intersection_of: RO:0002212 GO:0043500 ! negatively regulates muscle adaptation +relationship: RO:0002212 GO:0043500 ! negatively regulates muscle adaptation [Term] id: GO:0014805 @@ -56076,8 +55917,8 @@ def: "Any process in which smooth muscle adapts, with consequent modifications t synonym: "smooth muscle plasticity" RELATED [] is_a: GO:0043500 ! muscle adaptation intersection_of: GO:0043500 ! muscle adaptation -intersection_of: occurs_in UBERON:0001135 ! smooth muscle tissue -relationship: occurs_in UBERON:0001135 ! smooth muscle tissue +intersection_of: BFO:0000066 UBERON:0001135 ! occurs in smooth muscle tissue +relationship: BFO:0000066 UBERON:0001135 ! occurs in smooth muscle tissue [Term] id: GO:0014807 @@ -56087,9 +55928,9 @@ def: "Any process that modulates the frequency, rate or extent of somitogenesis. is_a: GO:0022603 ! regulation of anatomical structure morphogenesis is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001756 ! somitogenesis -relationship: regulates GO:0001756 ! somitogenesis -relationship: regulates GO:0009653 ! anatomical structure morphogenesis +intersection_of: RO:0002211 GO:0001756 ! regulates (processual) somitogenesis +relationship: RO:0002211 GO:0001756 ! regulates (processual) somitogenesis +relationship: RO:0002211 GO:0009653 ! regulates (processual) anatomical structure morphogenesis [Term] id: GO:0014812 @@ -56098,8 +55939,8 @@ namespace: biological_process def: "The orderly movement of a muscle cell from one site to another, often during the development of a multicellular organism." [CL:0000187, GOC:mtg_muscle] is_a: GO:0016477 ! cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000187 ! muscle cell -relationship: results_in_movement_of CL:0000187 ! muscle cell +intersection_of: RO:0002565 CL:0000187 ! results in movement of muscle cell +relationship: RO:0002565 CL:0000187 ! results in movement of muscle cell [Term] id: GO:0014819 @@ -56108,8 +55949,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of skeletal muscle contraction." [GOC:ef, GOC:mtg_muscle] is_a: GO:0006942 ! regulation of striated muscle contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003009 ! skeletal muscle contraction -relationship: regulates GO:0003009 ! skeletal muscle contraction +intersection_of: RO:0002211 GO:0003009 ! regulates (processual) skeletal muscle contraction +relationship: RO:0002211 GO:0003009 ! regulates (processual) skeletal muscle contraction [Term] id: GO:0014821 @@ -56203,8 +56044,8 @@ namespace: biological_process def: "The multiplication or reproduction of striated muscle cells, resulting in the expansion of a cell population. Striated muscles contain fibers that are divided by transverse bands into striations, and cardiac and skeletal muscle are types of striated muscle." [CL:0000737, GOC:ef, GOC:mtg_muscle] is_a: GO:0033002 ! muscle cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000737 ! striated muscle cell -relationship: acts_on_population_of CL:0000737 ! striated muscle cell +intersection_of: RO:0012003 CL:0000737 ! acts on population of striated muscle cell +relationship: RO:0012003 CL:0000737 ! acts on population of striated muscle cell [Term] id: GO:0014856 @@ -56213,8 +56054,8 @@ namespace: biological_process def: "The multiplication or reproduction of skeletal muscle cells, resulting in the expansion of a cell population." [CL:0000188, GOC:ef, GOC:mtg_muscle] is_a: GO:0014855 ! striated muscle cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000188 ! cell of skeletal muscle -relationship: acts_on_population_of CL:0000188 ! cell of skeletal muscle +intersection_of: RO:0012003 CL:0000188 ! acts on population of cell of skeletal muscle +relationship: RO:0012003 CL:0000188 ! acts on population of cell of skeletal muscle [Term] id: GO:0014857 @@ -56223,8 +56064,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of skeletal muscle cell proliferation." [CL:0000188, GOC:ef, GOC:mtg_muscle] is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014856 ! skeletal muscle cell proliferation -relationship: regulates GO:0014856 ! skeletal muscle cell proliferation +intersection_of: RO:0002211 GO:0014856 ! regulates (processual) skeletal muscle cell proliferation +relationship: RO:0002211 GO:0014856 ! regulates (processual) skeletal muscle cell proliferation [Term] id: GO:0014858 @@ -56234,8 +56075,8 @@ def: "Any process that activates or increases the frequency, rate or extent of s is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:0014857 ! regulation of skeletal muscle cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014856 ! skeletal muscle cell proliferation -relationship: positively_regulates GO:0014856 ! skeletal muscle cell proliferation +intersection_of: RO:0002213 GO:0014856 ! positively regulates skeletal muscle cell proliferation +relationship: RO:0002213 GO:0014856 ! positively regulates skeletal muscle cell proliferation [Term] id: GO:0014859 @@ -56245,8 +56086,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:0014857 ! regulation of skeletal muscle cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014856 ! skeletal muscle cell proliferation -relationship: negatively_regulates GO:0014856 ! skeletal muscle cell proliferation +intersection_of: RO:0002212 GO:0014856 ! negatively regulates skeletal muscle cell proliferation +relationship: RO:0002212 GO:0014856 ! negatively regulates skeletal muscle cell proliferation [Term] id: GO:0014860 @@ -56269,8 +56110,8 @@ synonym: "regulation of skeletal muscle contraction via membrane action potentia is_a: GO:0014819 ! regulation of skeletal muscle contraction is_a: GO:0098900 ! regulation of action potential intersection_of: GO:0050789 ! regulation of biological process -intersection_of: regulates GO:0100001 ! regulation of skeletal muscle contraction by action potential -relationship: regulates GO:0100001 ! regulation of skeletal muscle contraction by action potential +intersection_of: RO:0002211 GO:0100001 ! regulates (processual) regulation of skeletal muscle contraction by action potential +relationship: RO:0002211 GO:0100001 ! regulates (processual) regulation of skeletal muscle contraction by action potential [Term] id: GO:0014866 @@ -56279,8 +56120,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the skeletal myofibril over time, from its formation to the mature structure. A skeletal myofibril is a myofibril specific to skeletal muscle cells." [GOC:ef, GOC:mtg_muscle] is_a: GO:0030239 ! myofibril assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0098723 ! skeletal muscle myofibril -relationship: results_in_assembly_of GO:0098723 ! skeletal muscle myofibril +intersection_of: RO:0002588 GO:0098723 ! results in assembly of skeletal muscle myofibril +relationship: RO:0002588 GO:0098723 ! results in assembly of skeletal muscle myofibril [Term] id: GO:0014872 @@ -56289,8 +56130,8 @@ namespace: biological_process def: "The process resulting in the physical partitioning and separation of a myoblast into daughter cells. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers." [CL:0000056, GOC:ef, GOC:mtg_muscle] is_a: GO:0051301 ! cell division intersection_of: GO:0051301 ! cell division -intersection_of: has_primary_input CL:0000056 ! myoblast -relationship: has_primary_input CL:0000056 ! myoblast +intersection_of: RO:0004009 CL:0000056 ! has primary input myoblast +relationship: RO:0004009 CL:0000056 ! has primary input myoblast [Term] id: GO:0014874 @@ -56334,8 +56175,8 @@ def: "The process in which cardiac muscle adapts, with consequent modifications synonym: "cardiac muscle plasticity" RELATED [] is_a: GO:0014888 ! striated muscle adaptation intersection_of: GO:0043500 ! muscle adaptation -intersection_of: occurs_in UBERON:0001133 ! cardiac muscle tissue -relationship: occurs_in UBERON:0001133 ! cardiac muscle tissue +intersection_of: BFO:0000066 UBERON:0001133 ! occurs in cardiac muscle tissue +relationship: BFO:0000066 UBERON:0001133 ! occurs in cardiac muscle tissue [Term] id: GO:0014888 @@ -56345,8 +56186,8 @@ def: "Any process in which striated muscle adapts, with consequent modifications synonym: "striated muscle plasticity" RELATED [] is_a: GO:0043500 ! muscle adaptation intersection_of: GO:0043500 ! muscle adaptation -intersection_of: occurs_in UBERON:0002036 ! striated muscle tissue -relationship: occurs_in UBERON:0002036 ! striated muscle tissue +intersection_of: BFO:0000066 UBERON:0002036 ! occurs in striated muscle tissue +relationship: BFO:0000066 UBERON:0002036 ! occurs in striated muscle tissue [Term] id: GO:0014895 @@ -56356,8 +56197,8 @@ def: "The enlargement or overgrowth of all or part of an organ due to an increas is_a: GO:0014805 ! smooth muscle adaptation is_a: GO:0014896 ! muscle hypertrophy intersection_of: GO:0014896 ! muscle hypertrophy -intersection_of: occurs_in UBERON:0001135 ! smooth muscle tissue -relationship: occurs_in UBERON:0001135 ! smooth muscle tissue +intersection_of: BFO:0000066 UBERON:0001135 ! occurs in smooth muscle tissue +relationship: BFO:0000066 UBERON:0001135 ! occurs in smooth muscle tissue [Term] id: GO:0014896 @@ -56366,7 +56207,7 @@ namespace: biological_process def: "The muscle system process that results in enlargement or overgrowth of all or part of a muscle organ due to an increase in the size of its muscle cells. Physiological hypertrophy is a normal process during development (it stops in cardiac muscle after adolescence) and can also be brought on in response to demand. In athletes cardiac and skeletal muscles undergo hypertrophy stimulated by increasing muscle activity on exercise. Smooth muscle cells in the uterus undergo hypertrophy during pregnancy." [GOC:mtg_muscle] xref: Wikipedia:Muscle_hypertrophy is_a: GO:0003012 ! muscle system process -relationship: occurs_in UBERON:0002385 ! muscle tissue +relationship: BFO:0000066 UBERON:0002385 ! occurs in muscle tissue [Term] id: GO:0014897 @@ -56375,8 +56216,8 @@ namespace: biological_process def: "The enlargement or overgrowth of all or part of an organ due to an increase in size of muscle cells without cell division. In the case of striated muscle, this happens due to the additional synthesis of sarcomeric proteins and assembly of myofibrils." [GOC:mtg_muscle] is_a: GO:0014896 ! muscle hypertrophy intersection_of: GO:0014896 ! muscle hypertrophy -intersection_of: has_primary_input UBERON:0002036 ! striated muscle tissue -relationship: has_primary_input UBERON:0002036 ! striated muscle tissue +intersection_of: RO:0004009 UBERON:0002036 ! has primary input striated muscle tissue +relationship: RO:0004009 UBERON:0002036 ! has primary input striated muscle tissue [Term] id: GO:0014902 @@ -56385,8 +56226,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a myotube cell. Myotube differentiation starts with myoblast fusion and the appearance of specific cell markers (this is the cell development step). Then individual myotubes can fuse to form bigger myotubes and start to contract. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse." [GOC:mtg_muscle] is_a: GO:0051146 ! striated muscle cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002372 ! myotube -relationship: results_in_acquisition_of_features_of CL:0002372 ! myotube +intersection_of: RO:0002315 CL:0002372 ! results in acquisition of features of myotube +relationship: RO:0002315 CL:0002372 ! results in acquisition of features of myotube [Term] id: GO:0014904 @@ -56395,9 +56236,9 @@ namespace: biological_process def: "The process aimed at the progression of a myotube cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse." [GOC:mtg_muscle] is_a: GO:0055002 ! striated muscle cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0002372 ! myotube +intersection_of: RO:0002296 CL:0002372 ! results in development of myotube relationship: part_of GO:0014902 ! myotube differentiation -relationship: results_in_development_of CL:0002372 ! myotube +relationship: RO:0002296 CL:0002372 ! results in development of myotube [Term] id: GO:0014906 @@ -56427,8 +56268,8 @@ namespace: biological_process def: "The orderly movement of a smooth muscle cell from one site to another, often during the development of a multicellular organism." [CL:0000192, GOC:mtg_muscle] is_a: GO:0014812 ! muscle cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000192 ! smooth muscle cell -relationship: results_in_movement_of CL:0000192 ! smooth muscle cell +intersection_of: RO:0002565 CL:0000192 ! results in movement of smooth muscle cell +relationship: RO:0002565 CL:0000192 ! results in movement of smooth muscle cell [Term] id: GO:0014910 @@ -56437,8 +56278,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of smooth muscle cell migration." [CL:0000192, GOC:mtg_muscle] is_a: GO:0030334 ! regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014909 ! smooth muscle cell migration -relationship: regulates GO:0014909 ! smooth muscle cell migration +intersection_of: RO:0002211 GO:0014909 ! regulates (processual) smooth muscle cell migration +relationship: RO:0002211 GO:0014909 ! regulates (processual) smooth muscle cell migration [Term] id: GO:0014911 @@ -56448,8 +56289,8 @@ def: "Any process that activates, maintains or increases the frequency, rate or is_a: GO:0014910 ! regulation of smooth muscle cell migration is_a: GO:0030335 ! positive regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014909 ! smooth muscle cell migration -relationship: positively_regulates GO:0014909 ! smooth muscle cell migration +intersection_of: RO:0002213 GO:0014909 ! positively regulates smooth muscle cell migration +relationship: RO:0002213 GO:0014909 ! positively regulates smooth muscle cell migration [Term] id: GO:0014912 @@ -56459,8 +56300,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0014910 ! regulation of smooth muscle cell migration is_a: GO:0030336 ! negative regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014909 ! smooth muscle cell migration -relationship: negatively_regulates GO:0014909 ! smooth muscle cell migration +intersection_of: RO:0002212 GO:0014909 ! negatively regulates smooth muscle cell migration +relationship: RO:0002212 GO:0014909 ! negatively regulates smooth muscle cell migration [Term] id: GO:0015031 @@ -56476,8 +56317,8 @@ is_a: GO:0008104 ! protein localization is_a: GO:0045184 ! establishment of protein localization is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input PR:000000001 ! protein -relationship: has_primary_input PR:000000001 ! protein +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: RO:0004009 PR:000000001 ! has primary input protein [Term] id: GO:0015075 @@ -56488,9 +56329,9 @@ synonym: "ion transmembrane transporter activity" BROAD [] synonym: "ion transporter activity" EXACT [] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:24867 ! monoatomic ion -relationship: has_primary_input CHEBI:24867 ! monoatomic ion -relationship: part_of GO:0034220 ! monoatomic ion transmembrane transport +intersection_of: RO:0004009 CHEBI:24867 ! has primary input monoatomic ion +relationship: part_of GO:0034220 {source="GO_REF:0000090"} ! monoatomic ion transmembrane transport +relationship: RO:0004009 CHEBI:24867 ! has primary input monoatomic ion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24479" xsd:anyURI [Term] @@ -56503,49 +56344,65 @@ synonym: "proton transporter activity" EXACT [] xref: Reactome:R-HSA-1222516 "Intraphagosomal pH is lowered to 5 by V-ATPase" xref: Reactome:R-HSA-164834 "Enzyme-bound ATP is released" xref: Reactome:R-HSA-168313 "Virion-associated M2 protein mediated ion infusion" -xref: Reactome:R-HSA-170026 "Protons are translocated from the intermembrane space to the matrix" +xref: Reactome:R-HSA-170026 "UCP1 imports a proton" xref: Reactome:R-HSA-74723 "Endosome acidification" xref: Reactome:R-HSA-917841 "Acidification of Tf:TfR1 containing endosome" +xref: Reactome:R-HSA-9864415 "AAC1 imports a proton" is_a: GO:0008324 ! monoatomic cation transmembrane transporter activity is_a: GO:0022890 ! inorganic cation transmembrane transporter activity intersection_of: GO:0005215 ! transporter activity -intersection_of: has_primary_input CHEBI:15378 ! hydron -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:15378 ! hydron -relationship: part_of GO:1902600 ! proton transmembrane transport -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:15378 ! has primary input hydron +relationship: part_of GO:1902600 {source="GO_REF:0000090"} ! proton transmembrane transport +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:15378 ! has primary input hydron + +[Term] +id: GO:0015079 +name: potassium ion transmembrane transporter activity +namespace: molecular_function +alt_id: GO:0015388 +alt_id: GO:0022817 +def: "Enables the transfer of potassium ions (K+) from one side of a membrane to the other." [GOC:ai] +synonym: "potassium transporter activity" EXACT [] +synonym: "potassium uptake permease activity" RELATED [] +synonym: "potassium uptake transmembrane transporter activity" RELATED [] +is_a: GO:0046873 ! metal ion transmembrane transporter activity +intersection_of: GO:0022857 ! transmembrane transporter activity +intersection_of: RO:0004009 CHEBI:29103 ! has primary input potassium(1+) +relationship: part_of GO:0071805 {source="GO_REF:0000090"} ! potassium ion transmembrane transport +relationship: RO:0004009 CHEBI:29103 ! has primary input potassium(1+) +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27521" xsd:anyURI [Term] id: GO:0015081 name: sodium ion transmembrane transporter activity namespace: molecular_function alt_id: GO:0022816 -def: "Enables the transfer of sodium ions (Na+) from one side of a membrane to the other." [GOC:ai, GOC:BHF, RHEA:34963] +def: "Enables the transfer of sodium ions (Na+) from one side of a membrane to the other." [GOC:ai, GOC:BHF] synonym: "sodium transporter activity" EXACT [] -xref: RHEA:34963 is_a: GO:0046873 ! metal ion transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:29101 ! sodium(1+) -relationship: has_participant CHEBI:29101 ! sodium(1+) -relationship: has_primary_input CHEBI:29101 ! sodium(1+) +intersection_of: RO:0004009 CHEBI:29101 ! has primary input sodium(1+) relationship: part_of GO:0035725 ! sodium ion transmembrane transport +relationship: RO:0004009 CHEBI:29101 ! has primary input sodium(1+) property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24076" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27521" xsd:anyURI [Term] id: GO:0015085 name: calcium ion transmembrane transporter activity namespace: molecular_function -def: "Enables the transfer of calcium (Ca) ions from one side of a membrane to the other." [GOC:dgf, RHEA:29671] +def: "Enables the transfer of calcium (Ca) ions from one side of a membrane to the other." [GOC:dgf] xref: MetaCyc:TRANS-RXN-144 xref: Reactome:R-HSA-2534359 "CatSper Channel Mediated Calcium Transport" -xref: RHEA:29671 is_a: GO:0046873 ! metal ion transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:29108 ! calcium(2+) -relationship: has_participant CHEBI:29108 ! calcium(2+) -relationship: has_primary_input CHEBI:29108 ! calcium(2+) +intersection_of: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) relationship: part_of GO:0070588 ! calcium ion transmembrane transport +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26941" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27521" xsd:anyURI [Term] id: GO:0015101 @@ -56564,9 +56421,9 @@ xref: Reactome:R-HSA-9794523 "SLC22A1 transports Cipro into renal cell" xref: Reactome:R-HSA-9795207 "SLC22A1 transports Cipro into hepatic cell" is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:25697 ! organic cation -relationship: has_primary_input CHEBI:25697 ! organic cation +intersection_of: RO:0004009 CHEBI:25697 ! has primary input organic cation relationship: part_of GO:0015695 ! organic cation transport +relationship: RO:0004009 CHEBI:25697 ! has primary input organic cation [Term] id: GO:0015103 @@ -56575,9 +56432,9 @@ namespace: molecular_function def: "Enables the transfer of inorganic anions from one side of a membrane to the other. Inorganic anions are atoms or small molecules with a negative charge which do not contain carbon in covalent linkage." [GOC:ai] is_a: GO:0015318 ! inorganic molecular entity transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:24834 ! inorganic anion -relationship: has_primary_input CHEBI:24834 ! inorganic anion +intersection_of: RO:0004009 CHEBI:24834 ! has primary input inorganic anion relationship: part_of GO:0015698 ! inorganic anion transport +relationship: RO:0004009 CHEBI:24834 ! has primary input inorganic anion [Term] id: GO:0015106 @@ -56586,14 +56443,13 @@ namespace: molecular_function def: "Enables the transfer of bicarbonate from one side of a membrane to the other. Bicarbonate is the hydrogencarbonate ion, HCO3-." [GOC:ai] synonym: "hydrogencarbonate transmembrane transporter activity" EXACT [] xref: Reactome:R-HSA-2752067 "BESTs transport cytosolic HCO3- to extracellular region" -xref: RHEA:28695 is_a: GO:0008514 ! organic anion transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:17544 ! hydrogencarbonate -relationship: has_participant CHEBI:17544 ! hydrogencarbonate -relationship: has_primary_input CHEBI:17544 ! hydrogencarbonate +intersection_of: RO:0004009 CHEBI:17544 ! has primary input hydrogencarbonate relationship: part_of GO:0015701 ! bicarbonate transport +relationship: RO:0004009 CHEBI:17544 ! has primary input hydrogencarbonate property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26780" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27521" xsd:anyURI [Term] id: GO:0015116 @@ -56605,14 +56461,13 @@ synonym: "sulphate transporter activity" EXACT [] xref: Reactome:R-HSA-3560789 "Defective SLC26A2 does not cotransport extracellular SO4(2-), H+ to cytosol" xref: Reactome:R-HSA-427555 "SLC26A1,2 cotransport SO4(2-), H+ from extracellular region to cytosol" xref: Reactome:R-HSA-8875871 "SLC26A11 transports SO4(2-) from extracellular region to cytosol" -xref: RHEA:34983 is_a: GO:0015103 ! inorganic anion transmembrane transporter activity is_a: GO:1901682 ! sulfur compound transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:16189 ! sulfate -relationship: has_participant CHEBI:16189 ! sulfate -relationship: has_primary_input CHEBI:16189 ! sulfate -relationship: part_of GO:1902358 ! sulfate transmembrane transport +intersection_of: RO:0004009 CHEBI:16189 ! has primary input sulfate +relationship: part_of GO:1902358 {source="GO_REF:0000090"} ! sulfate transmembrane transport +relationship: RO:0004009 CHEBI:16189 ! has primary input sulfate +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27521" xsd:anyURI [Term] id: GO:0015123 @@ -56621,9 +56476,9 @@ namespace: molecular_function def: "Enables the transfer of acetate from one side of a membrane to the other. Acetate is the 2-carbon carboxylic acid ethanoic acid." [GOC:ai] is_a: GO:0046943 ! carboxylic acid transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:30089 ! acetate -relationship: has_primary_input CHEBI:30089 ! acetate -relationship: part_of GO:0035433 ! acetate transmembrane transport +intersection_of: RO:0004009 CHEBI:30089 ! has primary input acetate +relationship: part_of GO:0035433 {source="GO_REF:0000090"} ! acetate transmembrane transport +relationship: RO:0004009 CHEBI:30089 ! has primary input acetate [Term] id: GO:0015125 @@ -56640,9 +56495,9 @@ is_a: GO:0008028 ! monocarboxylic acid transmembrane transporter activity is_a: GO:0170055 ! lipid transmembrane transporter activity is_a: GO:1901618 ! organic hydroxy compound transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:3098 ! bile acid -relationship: has_primary_input CHEBI:3098 ! bile acid +intersection_of: RO:0004009 CHEBI:3098 ! has primary input bile acid relationship: part_of GO:0015721 ! bile acid and bile salt transport +relationship: RO:0004009 CHEBI:3098 ! has primary input bile acid [Term] id: GO:0015127 @@ -56654,10 +56509,10 @@ xref: Reactome:R-HSA-5679041 "ABCC2 transports BMG,BDG from cytosol to extracell xref: Reactome:R-HSA-9661417 "ABCG2 tetramer transports BMG,BDG from cytosol to extracellular region" is_a: GO:0046943 ! carboxylic acid transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:57977 ! bilirubin(2-) -relationship: has_primary_input CHEBI:57977 ! bilirubin(2-) +intersection_of: RO:0004009 CHEBI:57977 ! has primary input bilirubin(2-) relationship: never_in_taxon NCBITaxon:4751 ! Fungi relationship: part_of GO:0015723 ! bilirubin transport +relationship: RO:0004009 CHEBI:57977 ! has primary input bilirubin(2-) [Term] id: GO:0015144 @@ -56669,9 +56524,9 @@ synonym: "carbohydrate transporter activity" RELATED [] synonym: "sugar transporter" NARROW [] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:16646 ! carbohydrate -relationship: has_primary_input CHEBI:16646 ! carbohydrate -relationship: part_of GO:0034219 ! carbohydrate transmembrane transport +intersection_of: RO:0004009 CHEBI:16646 ! has primary input carbohydrate +relationship: part_of GO:0034219 {source="GO_REF:0000090"} ! carbohydrate transmembrane transport +relationship: RO:0004009 CHEBI:16646 ! has primary input carbohydrate [Term] id: GO:0015145 @@ -56680,9 +56535,9 @@ namespace: molecular_function def: "Enables the transfer of a monosaccharide from one side of a membrane to the other." [GOC:jl, GOC:mtg_transport, ISBN:0815340729] is_a: GO:0051119 ! sugar transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:35381 ! monosaccharide -relationship: has_primary_input CHEBI:35381 ! monosaccharide +intersection_of: RO:0004009 CHEBI:35381 ! has primary input monosaccharide relationship: part_of GO:0015749 ! monosaccharide transmembrane transport +relationship: RO:0004009 CHEBI:35381 ! has primary input monosaccharide [Term] id: GO:0015146 @@ -56691,9 +56546,9 @@ namespace: molecular_function def: "Enables the transfer of a pentose sugar from one side of a membrane to the other. Pentose is a monosaccharide with 5 carbon atoms." [GOC:ai, GOC:mtg_transport, ISBN:0815340729] is_a: GO:0015145 ! monosaccharide transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:25901 ! pentose -relationship: has_primary_input CHEBI:25901 ! pentose +intersection_of: RO:0004009 CHEBI:25901 ! has primary input pentose relationship: part_of GO:0015750 ! pentose transmembrane transport +relationship: RO:0004009 CHEBI:25901 ! has primary input pentose [Term] id: GO:0015149 @@ -56704,9 +56559,9 @@ xref: Reactome:R-HSA-189242 "SLC2A2 tetramer transports Fru, Gal, Glc from cytos xref: Reactome:R-HSA-5638222 "Defective SLC2A2 does not transport Fru, Gal, Glc from cytosol to extracellular region" is_a: GO:0015145 ! monosaccharide transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:18133 ! hexose -relationship: has_primary_input CHEBI:18133 ! hexose -relationship: part_of GO:0008645 ! hexose transmembrane transport +intersection_of: RO:0004009 CHEBI:18133 ! has primary input hexose +relationship: part_of GO:0008645 {source="GO_REF:0000090"} ! hexose transmembrane transport +relationship: RO:0004009 CHEBI:18133 ! has primary input hexose [Term] id: GO:0015159 @@ -56716,9 +56571,9 @@ def: "Enables the transfer of polysaccharides from one side of a membrane to the is_a: GO:0015144 ! carbohydrate transmembrane transporter activity is_a: GO:0022884 ! macromolecule transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:18154 ! polysaccharide -relationship: has_primary_input CHEBI:18154 ! polysaccharide +intersection_of: RO:0004009 CHEBI:18154 ! has primary input polysaccharide relationship: part_of GO:0015774 ! polysaccharide transport +relationship: RO:0004009 CHEBI:18154 ! has primary input polysaccharide [Term] id: GO:0015160 @@ -56727,9 +56582,9 @@ namespace: molecular_function def: "Enables the transfer of beta-glucans from one side of a membrane to the other. Beta-glucans are compounds composed of glucose residues linked by beta-glucosidic bonds." [GOC:ai, GOC:mtg_transport, ISBN:0815340729] is_a: GO:0015159 ! polysaccharide transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:28793 ! beta-D-glucan -relationship: has_primary_input CHEBI:28793 ! beta-D-glucan +intersection_of: RO:0004009 CHEBI:28793 ! has primary input beta-D-glucan relationship: part_of GO:0015775 ! beta-glucan transport +relationship: RO:0004009 CHEBI:28793 ! has primary input beta-D-glucan [Term] id: GO:0015171 @@ -56790,9 +56645,9 @@ xref: Reactome:R-HSA-888592 "Loading of GABA into clathrin sculpted GABA transpo xref: Reactome:R-HSA-8952726 "SLC38A9 transports L-Arg from lysosomal lumen to cytosol" is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion -relationship: has_primary_input CHEBI:35238 ! amino acid zwitterion -relationship: part_of GO:0003333 ! amino acid transmembrane transport +intersection_of: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion +relationship: part_of GO:0003333 {source="GO_REF:0000090"} ! amino acid transmembrane transport +relationship: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion [Term] id: GO:0015172 @@ -56800,7 +56655,7 @@ name: acidic amino acid transmembrane transporter activity namespace: molecular_function def: "Enables the transfer of acidic amino acids from one side of a membrane to the other. Acidic amino acids have side chains with a negative charge at pH 7.3." [GOC:ai, GOC:mtg_transport, ISBN:0815340729] synonym: "acidic amino acid transporter activity" BROAD [] -xref: Reactome:R-HSA-372448 "SLC25A12,13 exchange cytosolic L-Glu for mitochondrial matrix L-Asp" +xref: Reactome:R-HSA-372448 "SLC25A12,13 exchange L-Glu and L-Asp" is_a: GO:0015171 ! amino acid transmembrane transporter activity relationship: part_of GO:0015800 ! acidic amino acid transport @@ -56814,9 +56669,9 @@ synonym: "hydroxy/aromatic amino acid permease activity" RELATED [] synonym: "valine/tyrosine/tryptophan permease activity" RELATED [] is_a: GO:0005342 ! organic acid transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:33856 ! aromatic amino acid -relationship: has_primary_input CHEBI:33856 ! aromatic amino acid +intersection_of: RO:0004009 CHEBI:33856 ! has primary input aromatic amino acid relationship: part_of GO:0015801 ! aromatic amino acid transport +relationship: RO:0004009 CHEBI:33856 ! has primary input aromatic amino acid [Term] id: GO:0015179 @@ -56827,10 +56682,10 @@ synonym: "L-amino acid transporter activity" BROAD [] xref: Reactome:R-HSA-212614 "Glutamine transport from astrocytes" is_a: GO:0015171 ! amino acid transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:59869 ! L-alpha-amino acid zwitterion -relationship: has_primary_input CHEBI:59869 ! L-alpha-amino acid zwitterion +intersection_of: RO:0004009 CHEBI:59869 ! has primary input L-alpha-amino acid zwitterion relationship: part_of GO:0015807 ! L-amino acid transport -relationship: part_of GO:1902475 ! L-alpha-amino acid transmembrane transport +relationship: part_of GO:1902475 {source="GO_REF:0000090"} ! L-alpha-amino acid transmembrane transport +relationship: RO:0004009 CHEBI:59869 ! has primary input L-alpha-amino acid zwitterion [Term] id: GO:0015185 @@ -56843,9 +56698,9 @@ synonym: "betaine/GABA:sodium symporter activity" NARROW [] synonym: "GABA transporter activity" EXACT [] is_a: GO:0015171 ! amino acid transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:59888 ! gamma-aminobutyric acid zwitterion -relationship: has_primary_input CHEBI:59888 ! gamma-aminobutyric acid zwitterion +intersection_of: RO:0004009 CHEBI:59888 ! has primary input gamma-aminobutyric acid zwitterion relationship: part_of GO:0015812 ! gamma-aminobutyric acid transport +relationship: RO:0004009 CHEBI:59888 ! has primary input gamma-aminobutyric acid zwitterion [Term] id: GO:0015192 @@ -56856,9 +56711,9 @@ synonym: "L-phenylalanine permease activity" EXACT [] synonym: "L-phenylalanine transporter activity" BROAD [] is_a: GO:0015171 ! amino acid transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:58095 ! L-phenylalanine zwitterion -relationship: has_primary_input CHEBI:58095 ! L-phenylalanine zwitterion +intersection_of: RO:0004009 CHEBI:58095 ! has primary input L-phenylalanine zwitterion relationship: part_of GO:0015823 ! phenylalanine transport +relationship: RO:0004009 CHEBI:58095 ! has primary input L-phenylalanine zwitterion [Term] id: GO:0015205 @@ -56868,9 +56723,9 @@ alt_id: GO:0015392 def: "Enables the transfer of a nucleobase, any nitrogenous base that is a constituent of a nucleoside, nucleotide, or nucleic acidfrom one side of a membrane to the other." [ISBN:0198506732] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:18282 ! nucleobase -relationship: has_primary_input CHEBI:18282 ! nucleobase +intersection_of: RO:0004009 CHEBI:18282 ! has primary input nucleobase relationship: part_of GO:0015851 ! nucleobase transport +relationship: RO:0004009 CHEBI:18282 ! has primary input nucleobase [Term] id: GO:0015207 @@ -56881,9 +56736,9 @@ xref: Reactome:R-HSA-163215 "SLC25A5,6 dimers exchange ATP for ADP across the mi xref: Reactome:R-HSA-5672027 "ARL2:GTP:ARL2BP:SLC25A4 dimer exchanges ATP for ADP across the mitochondrial inner membrane" is_a: GO:0005345 ! purine nucleobase transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:16708 ! adenine -relationship: has_primary_input CHEBI:16708 ! adenine +intersection_of: RO:0004009 CHEBI:16708 ! has primary input adenine relationship: part_of GO:0015853 ! adenine transport +relationship: RO:0004009 CHEBI:16708 ! has primary input adenine property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27278" xsd:anyURI [Term] @@ -56893,9 +56748,9 @@ namespace: molecular_function def: "Enables the transfer of a purine nucleoside, a purine base covalently bonded to a ribose or deoxyribose sugar, from one side of a membrane to the other." [GOC:ai] is_a: GO:0005337 ! nucleoside transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:26394 ! purine nucleoside -relationship: has_primary_input CHEBI:26394 ! purine nucleoside -relationship: part_of GO:0015860 ! purine nucleoside transmembrane transport +intersection_of: RO:0004009 CHEBI:26394 ! has primary input purine nucleoside +relationship: part_of GO:0015860 {source="GO_REF:0000090"} ! purine nucleoside transmembrane transport +relationship: RO:0004009 CHEBI:26394 ! has primary input purine nucleoside [Term] id: GO:0015215 @@ -56905,9 +56760,9 @@ def: "Enables the transfer of a nucleotide, any compound consisting of a nucleos is_a: GO:0015605 ! organophosphate ester transmembrane transporter activity is_a: GO:0015932 ! nucleobase-containing compound transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:36976 ! nucleotide -relationship: has_primary_input CHEBI:36976 ! nucleotide -relationship: part_of GO:1901679 ! nucleotide transmembrane transport +intersection_of: RO:0004009 CHEBI:36976 ! has primary input nucleotide +relationship: part_of GO:1901679 {source="GO_REF:0000090"} ! nucleotide transmembrane transport +relationship: RO:0004009 CHEBI:36976 ! has primary input nucleotide [Term] id: GO:0015216 @@ -56916,9 +56771,9 @@ namespace: molecular_function def: "Enables the transfer of a purine nucleotide, any compound consisting of a purine nucleoside esterified with (ortho)phosphate, from one side of a membrane to the other." [GOC:ai] is_a: GO:0015215 ! nucleotide transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:26395 ! purine nucleotide -relationship: has_primary_input CHEBI:26395 ! purine nucleotide +intersection_of: RO:0004009 CHEBI:26395 ! has primary input purine nucleotide relationship: part_of GO:0015865 ! purine nucleotide transport +relationship: RO:0004009 CHEBI:26395 ! has primary input purine nucleotide [Term] id: GO:0015217 @@ -56927,9 +56782,9 @@ namespace: molecular_function def: "Enables the transfer of ADP, adenosine diphosphate, from one side of a membrane to the other." [GOC:ai] is_a: GO:0008514 ! organic anion transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:456216 ! ADP(3-) -relationship: has_primary_input CHEBI:456216 ! ADP(3-) +intersection_of: RO:0004009 CHEBI:456216 ! has primary input ADP(3-) relationship: part_of GO:0015866 ! ADP transport +relationship: RO:0004009 CHEBI:456216 ! has primary input ADP(3-) [Term] id: GO:0015220 @@ -56945,9 +56800,9 @@ xref: Reactome:R-HSA-5658483 "Defective SLC5A7 does not cotransport Cho, Cl-, Na xref: Reactome:R-HSA-6797956 "SLC44A1 transports Cho from cytosol to mitochondrial matrix" is_a: GO:0015101 ! organic cation transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:15354 ! choline -relationship: has_primary_input CHEBI:15354 ! choline +intersection_of: RO:0004009 CHEBI:15354 ! has primary input choline relationship: part_of GO:0015871 ! choline transport +relationship: RO:0004009 CHEBI:15354 ! has primary input choline [Term] id: GO:0015245 @@ -56961,14 +56816,16 @@ synonym: "fatty-acyl group transporter activity" BROAD [] synonym: "peroxisomal fatty acyl transporter" NARROW [] xref: Reactome:R-HSA-5627891 "Defective SLC27A4 does not transport LCFAs from extracellular region to cytosol" xref: Reactome:R-HSA-879585 "SLC27A1,4,6 transport LCFAs from extracellular region to cytosol" +xref: Reactome:R-HSA-9032315 "oxo-DHAs translocate from cytosol to extracellular region" +xref: Reactome:R-HSA-9032323 "oxo-DPAn-3s translocate from cytosol to extracellular region" is_a: GO:0046943 ! carboxylic acid transmembrane transporter activity is_a: GO:0170055 ! lipid transmembrane transporter activity intersection_of: GO:0005215 ! transporter activity -intersection_of: has_primary_input CHEBI:28868 ! fatty acid anion -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:28868 ! fatty acid anion +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:28868 ! has primary input fatty acid anion relationship: part_of GO:0015908 ! fatty acid transport -relationship: results_in_transport_across GO:0016020 ! membrane +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:28868 ! has primary input fatty acid anion [Term] id: GO:0015291 @@ -57004,8 +56861,8 @@ synonym: "inorganic solute uptake transmembrane transporter activity" EXACT [] synonym: "inorganic uptake permease activity" EXACT [] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:24835 ! inorganic molecular entity -relationship: has_primary_input CHEBI:24835 ! inorganic molecular entity +intersection_of: RO:0004009 CHEBI:24835 ! has primary input inorganic molecular entity +relationship: RO:0004009 CHEBI:24835 ! has primary input inorganic molecular entity property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/14372" xsd:anyURI [Term] @@ -57017,8 +56874,8 @@ synonym: "monocarboxylate porter activity" RELATED [] is_a: GO:0008028 ! monocarboxylic acid transmembrane transporter activity is_a: GO:0015291 ! secondary active transmembrane transporter activity intersection_of: GO:0015291 ! secondary active transmembrane transporter activity -intersection_of: has_primary_input CHEBI:25384 ! monocarboxylic acid -relationship: has_primary_input CHEBI:25384 ! monocarboxylic acid +intersection_of: RO:0004009 CHEBI:25384 ! has primary input monocarboxylic acid +relationship: RO:0004009 CHEBI:25384 ! has primary input monocarboxylic acid [Term] id: GO:0015464 @@ -57029,10 +56886,10 @@ comment: For nicotinic acetylcholine receptors that act as ion channels, instead is_a: GO:0004888 ! transmembrane signaling receptor activity is_a: GO:0098960 ! postsynaptic neurotransmitter receptor activity intersection_of: GO:0038023 ! signaling receptor activity -intersection_of: has_primary_input CHEBI:15355 ! acetylcholine +intersection_of: RO:0004009 CHEBI:15355 ! has primary input acetylcholine relationship: has_part GO:0042166 ! acetylcholine binding -relationship: has_primary_input CHEBI:15355 ! acetylcholine relationship: part_of GO:0007271 ! synaptic transmission, cholinergic +relationship: RO:0004009 CHEBI:15355 ! has primary input acetylcholine [Term] id: GO:0015499 @@ -57043,14 +56900,13 @@ def: "Enables the transfer of formate from one side of a membrane to the other. synonym: "formate uptake permease activity" EXACT [] synonym: "formate uptake transmembrane transporter activity" RELATED [] xref: MetaCyc:TRANS-RXN-1 -xref: RHEA:29679 is_a: GO:0046943 ! carboxylic acid transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:15740 ! formate -relationship: has_participant CHEBI:15740 ! formate -relationship: has_primary_input CHEBI:15740 ! formate +intersection_of: RO:0004009 CHEBI:15740 ! has primary input formate relationship: part_of GO:0015724 ! formate transport +relationship: RO:0004009 CHEBI:15740 ! has primary input formate property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26941" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27521" xsd:anyURI [Term] id: GO:0015552 @@ -57059,11 +56915,11 @@ namespace: molecular_function def: "Enables the transfer of propionate from one side of a membrane to the other. Propionate (or propanoate) is the organic acid CH3-CH2-COOH." [GOC:ai] is_a: GO:0015636 ! short-chain fatty acid transmembrane transporter activity intersection_of: GO:0005215 ! transporter activity -intersection_of: has_primary_input CHEBI:17272 ! propionate -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:17272 ! propionate +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:17272 ! has primary input propionate relationship: part_of GO:0015730 ! propanoate transmembrane transport -relationship: results_in_transport_across GO:0016020 ! membrane +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:17272 ! has primary input propionate [Term] id: GO:0015567 @@ -57072,9 +56928,9 @@ namespace: molecular_function def: "Enables the transfer of alkanes from one side of a membrane to the other. Alkanes are saturated aliphatic hydrocarbon compounds." [GOC:ai] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:18310 ! alkane -relationship: has_primary_input CHEBI:18310 ! alkane -relationship: part_of GO:0015895 ! alkane transport +intersection_of: RO:0004009 CHEBI:18310 ! has primary input alkane +relationship: part_of GO:0015895 {source="GO_REF:0000090"} ! alkane transport +relationship: RO:0004009 CHEBI:18310 ! has primary input alkane [Term] id: GO:0015591 @@ -57083,9 +56939,9 @@ namespace: molecular_function def: "Enables the transfer of D-ribose from one side of a membrane to the other. As beta-D-ribofuranose, D-ribose forms the glycose group of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12." [GOC:mtg_transport, ISBN:0198506732, ISBN:0815340729] is_a: GO:0015146 ! pentose transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:16988 ! D-ribose -relationship: has_primary_input CHEBI:16988 ! D-ribose +intersection_of: RO:0004009 CHEBI:16988 ! has primary input D-ribose relationship: part_of GO:0015752 ! D-ribose transmembrane transport +relationship: RO:0004009 CHEBI:16988 ! has primary input D-ribose [Term] id: GO:0015605 @@ -57094,9 +56950,9 @@ namespace: molecular_function def: "Enables the transfer of organophosphate esters from one side of a membrane to the other. Organophosphate esters are small organic molecules containing phosphate ester bonds." [GOC:mcc] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:25703 ! organic phosphate -relationship: has_primary_input CHEBI:25703 ! organic phosphate +intersection_of: RO:0004009 CHEBI:25703 ! has primary input organic phosphate relationship: part_of GO:0015748 ! organophosphate ester transport +relationship: RO:0004009 CHEBI:25703 ! has primary input organic phosphate [Term] id: GO:0015629 @@ -57130,11 +56986,11 @@ synonym: "short-chain fatty acid transporter activity" RELATED [] synonym: "short-chain fatty acid uptake transporter activity" RELATED [] is_a: GO:0015245 ! fatty acid transmembrane transporter activity intersection_of: GO:0005215 ! transporter activity -intersection_of: has_primary_input CHEBI:58951 ! short-chain fatty acid anion -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:58951 ! short-chain fatty acid anion +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:58951 ! has primary input short-chain fatty acid anion relationship: part_of GO:0015912 ! short-chain fatty acid transport -relationship: results_in_transport_across GO:0016020 ! membrane +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:58951 ! has primary input short-chain fatty acid anion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26445" xsd:anyURI [Term] @@ -57147,9 +57003,9 @@ synonym: "quaternary amine transmembrane transporter activity" EXACT [] synonym: "quaternary ammonium compound transporter activity" EXACT [] is_a: GO:0015101 ! organic cation transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:26469 ! quaternary nitrogen compound -relationship: has_primary_input CHEBI:26469 ! quaternary nitrogen compound +intersection_of: RO:0004009 CHEBI:26469 ! has primary input quaternary nitrogen compound relationship: part_of GO:0015697 ! quaternary ammonium group transport +relationship: RO:0004009 CHEBI:26469 ! has primary input quaternary nitrogen compound [Term] id: GO:0015665 @@ -57158,8 +57014,8 @@ namespace: molecular_function def: "Enables the transfer of an alcohol from one side of a membrane to the other. An alcohol is any carbon compound that contains a hydroxyl group." [ISBN:0198506732] is_a: GO:1901618 ! organic hydroxy compound transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:30879 ! alcohol -relationship: has_primary_input CHEBI:30879 ! alcohol +intersection_of: RO:0004009 CHEBI:30879 ! has primary input alcohol +relationship: RO:0004009 CHEBI:30879 ! has primary input alcohol [Term] id: GO:0015669 @@ -57177,8 +57033,8 @@ def: "The directed movement of carbon dioxide (CO2) into, out of or within a cel is_a: GO:0015669 ! gas transport is_a: GO:0019755 ! one-carbon compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:16526 ! carbon dioxide -relationship: has_primary_input CHEBI:16526 ! carbon dioxide +intersection_of: RO:0004009 CHEBI:16526 ! has primary input carbon dioxide +relationship: RO:0004009 CHEBI:16526 ! has primary input carbon dioxide [Term] id: GO:0015671 @@ -57187,8 +57043,8 @@ namespace: biological_process def: "The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] is_a: GO:0015669 ! gas transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:15379 ! dioxygen -relationship: has_primary_input CHEBI:15379 ! dioxygen +intersection_of: RO:0004009 CHEBI:15379 ! has primary input dioxygen +relationship: RO:0004009 CHEBI:15379 ! has primary input dioxygen [Term] id: GO:0015695 @@ -57197,8 +57053,8 @@ namespace: biological_process def: "The directed movement of organic cations into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Organic cations are atoms or small molecules with a positive charge which contain carbon in covalent linkage." [GOC:ai] is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:25697 ! organic cation -relationship: has_primary_input CHEBI:25697 ! organic cation +intersection_of: RO:0004009 CHEBI:25697 ! has primary input organic cation +relationship: RO:0004009 CHEBI:25697 ! has primary input organic cation [Term] id: GO:0015697 @@ -57210,8 +57066,8 @@ synonym: "quaternary amine transport" EXACT [] synonym: "quaternary ammonium compound transport" EXACT [] is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:26469 ! quaternary nitrogen compound -relationship: has_primary_input CHEBI:26469 ! quaternary nitrogen compound +intersection_of: RO:0004009 CHEBI:26469 ! has primary input quaternary nitrogen compound +relationship: RO:0004009 CHEBI:26469 ! has primary input quaternary nitrogen compound [Term] id: GO:0015698 @@ -57220,8 +57076,8 @@ namespace: biological_process def: "The directed movement of inorganic anions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Inorganic anions are atoms or small molecules with a negative charge which do not contain carbon in covalent linkage." [GOC:krc] is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:24834 ! inorganic anion -relationship: has_primary_input CHEBI:24834 ! inorganic anion +intersection_of: RO:0004009 CHEBI:24834 ! has primary input inorganic anion +relationship: RO:0004009 CHEBI:24834 ! has primary input inorganic anion [Term] id: GO:0015701 @@ -57231,8 +57087,8 @@ def: "The directed movement of bicarbonate into, out of or within a cell, or bet synonym: "hydrogencarbonate transport" EXACT [] is_a: GO:0015711 ! organic anion transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:17544 ! hydrogencarbonate -relationship: has_primary_input CHEBI:17544 ! hydrogencarbonate +intersection_of: RO:0004009 CHEBI:17544 ! has primary input hydrogencarbonate +relationship: RO:0004009 CHEBI:17544 ! has primary input hydrogencarbonate property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26780" xsd:anyURI [Term] @@ -57242,8 +57098,8 @@ namespace: biological_process def: "The directed movement of organic anions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage." [GOC:ai, GOC:krc] is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:25696 ! organic anion -relationship: has_primary_input CHEBI:25696 ! organic anion +intersection_of: RO:0004009 CHEBI:25696 ! has primary input organic anion +relationship: RO:0004009 CHEBI:25696 ! has primary input organic anion [Term] id: GO:0015718 @@ -57252,8 +57108,8 @@ namespace: biological_process def: "The directed movement of monocarboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:krc] is_a: GO:0046942 ! carboxylic acid transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:35757 ! monocarboxylic acid anion -relationship: has_primary_input CHEBI:35757 ! monocarboxylic acid anion +intersection_of: RO:0004009 CHEBI:35757 ! has primary input monocarboxylic acid anion +relationship: RO:0004009 CHEBI:35757 ! has primary input monocarboxylic acid anion [Term] id: GO:0015721 @@ -57267,8 +57123,8 @@ is_a: GO:0015718 ! monocarboxylic acid transport is_a: GO:0015849 ! organic acid transport is_a: GO:0015850 ! organic hydroxy compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:3098 ! bile acid -relationship: has_primary_input CHEBI:3098 ! bile acid +intersection_of: RO:0004009 CHEBI:3098 ! has primary input bile acid +relationship: RO:0004009 CHEBI:3098 ! has primary input bile acid [Term] id: GO:0015723 @@ -57277,9 +57133,9 @@ namespace: biological_process def: "The directed movement of bilirubin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:krc] is_a: GO:0006835 ! dicarboxylic acid transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:57977 ! bilirubin(2-) -relationship: has_primary_input CHEBI:57977 ! bilirubin(2-) +intersection_of: RO:0004009 CHEBI:57977 ! has primary input bilirubin(2-) relationship: never_in_taxon NCBITaxon:4751 ! Fungi +relationship: RO:0004009 CHEBI:57977 ! has primary input bilirubin(2-) [Term] id: GO:0015724 @@ -57288,8 +57144,8 @@ namespace: biological_process def: "The directed movement of formate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:krc] is_a: GO:0015718 ! monocarboxylic acid transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:15740 ! formate -relationship: has_primary_input CHEBI:15740 ! formate +intersection_of: RO:0004009 CHEBI:15740 ! has primary input formate +relationship: RO:0004009 CHEBI:15740 ! has primary input formate [Term] id: GO:0015730 @@ -57300,8 +57156,8 @@ synonym: "propanoate transport" BROAD [] synonym: "propionate transport" EXACT [] is_a: GO:0015913 ! short-chain fatty acid transmembrane transport intersection_of: GO:0055085 ! transmembrane transport -intersection_of: has_primary_input CHEBI:17272 ! propionate -relationship: has_primary_input CHEBI:17272 ! propionate +intersection_of: RO:0004009 CHEBI:17272 ! has primary input propionate +relationship: RO:0004009 CHEBI:17272 ! has primary input propionate property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24587" xsd:anyURI [Term] @@ -57311,8 +57167,8 @@ namespace: biological_process def: "The directed movement of organophosphate esters into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Organophosphate esters are small organic molecules containing phosphate ester bonds." [GOC:mcc] is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:25703 ! organic phosphate -relationship: has_primary_input CHEBI:25703 ! organic phosphate +intersection_of: RO:0004009 CHEBI:25703 ! has primary input organic phosphate +relationship: RO:0004009 CHEBI:25703 ! has primary input organic phosphate [Term] id: GO:0015749 @@ -57323,10 +57179,10 @@ def: "The process in which a monosaccharide is transported across a lipid bilaye synonym: "monosaccharide transport" RELATED [] is_a: GO:0034219 ! carbohydrate transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:35381 ! monosaccharide -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:35381 ! monosaccharide -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:35381 ! has primary input monosaccharide +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:35381 ! has primary input monosaccharide created_by: vw creation_date: 2017-02-19T10:41:27Z @@ -57338,10 +57194,10 @@ def: "The process in which pentose is transported across a lipid bilayer, from o synonym: "pentose transport" RELATED [] is_a: GO:0015749 ! monosaccharide transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:25901 ! pentose -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:25901 ! pentose -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:25901 ! has primary input pentose +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:25901 ! has primary input pentose [Term] id: GO:0015752 @@ -57351,10 +57207,10 @@ def: "The process in which D-ribose is transported across a lipid bilayer, from synonym: "D-ribose transport" RELATED [] is_a: GO:0015750 ! pentose transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:16988 ! D-ribose -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:16988 ! D-ribose -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:16988 ! has primary input D-ribose +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:16988 ! has primary input D-ribose [Term] id: GO:0015774 @@ -57363,9 +57219,9 @@ namespace: biological_process def: "The directed movement of polysaccharides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A polysaccharide is a polymer of many (typically more than 10) monosaccharide residues linked glycosidically." [GOC:ai] is_a: GO:0008643 ! carbohydrate transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:18154 ! polysaccharide -relationship: has_primary_input CHEBI:18154 ! polysaccharide +intersection_of: RO:0004009 CHEBI:18154 ! has primary input polysaccharide relationship: part_of GO:0033037 ! polysaccharide localization +relationship: RO:0004009 CHEBI:18154 ! has primary input polysaccharide [Term] id: GO:0015775 @@ -57374,8 +57230,8 @@ namespace: biological_process def: "The directed movement of beta-glucans into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Beta-glucans are compounds composed of glucose residues linked by beta-glucosidic bonds." [GOC:ai] is_a: GO:0015774 ! polysaccharide transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:28793 ! beta-D-glucan -relationship: has_primary_input CHEBI:28793 ! beta-D-glucan +intersection_of: RO:0004009 CHEBI:28793 ! has primary input beta-D-glucan +relationship: RO:0004009 CHEBI:28793 ! has primary input beta-D-glucan [Term] id: GO:0015800 @@ -57392,8 +57248,8 @@ def: "The directed movement of aromatic amino acids, amino acids with aromatic r is_a: GO:0015849 ! organic acid transport is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:33856 ! aromatic amino acid -relationship: has_primary_input CHEBI:33856 ! aromatic amino acid +intersection_of: RO:0004009 CHEBI:33856 ! has primary input aromatic amino acid +relationship: RO:0004009 CHEBI:33856 ! has primary input aromatic amino acid [Term] id: GO:0015807 @@ -57402,8 +57258,8 @@ namespace: biological_process def: "The directed movement of L-enantiomer amino acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai, GOC:jsg, GOC:mah] is_a: GO:0006865 ! amino acid transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:59869 ! L-alpha-amino acid zwitterion -relationship: has_primary_input CHEBI:59869 ! L-alpha-amino acid zwitterion +intersection_of: RO:0004009 CHEBI:59869 ! has primary input L-alpha-amino acid zwitterion +relationship: RO:0004009 CHEBI:59869 ! has primary input L-alpha-amino acid zwitterion [Term] id: GO:0015812 @@ -57416,8 +57272,8 @@ synonym: "4-aminobutyrate transport" EXACT [] synonym: "GABA transport" EXACT [] is_a: GO:0006865 ! amino acid transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:59888 ! gamma-aminobutyric acid zwitterion -relationship: has_primary_input CHEBI:59888 ! gamma-aminobutyric acid zwitterion +intersection_of: RO:0004009 CHEBI:59888 ! has primary input gamma-aminobutyric acid zwitterion +relationship: RO:0004009 CHEBI:59888 ! has primary input gamma-aminobutyric acid zwitterion [Term] id: GO:0015813 @@ -57431,10 +57287,10 @@ is_a: GO:0003333 ! amino acid transmembrane transport is_a: GO:0051938 ! L-glutamate import is_a: GO:1905039 ! carboxylic acid transmembrane transport intersection_of: GO:0015800 ! acidic amino acid transport -intersection_of: has_primary_input CHEBI:29985 ! L-glutamate(1-) -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:29985 ! L-glutamate(1-) -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:29985 ! has primary input L-glutamate(1-) +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:29985 ! has primary input L-glutamate(1-) [Term] id: GO:0015823 @@ -57445,8 +57301,8 @@ synonym: "L-phenylalanine transport" NARROW [] is_a: GO:0046942 ! carboxylic acid transport is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:32504 ! phenylalaninate -relationship: has_primary_input CHEBI:32504 ! phenylalaninate +intersection_of: RO:0004009 CHEBI:32504 ! has primary input phenylalaninate +relationship: RO:0004009 CHEBI:32504 ! has primary input phenylalaninate [Term] id: GO:0015828 @@ -57456,8 +57312,8 @@ def: "The directed movement of tyrosine, 2-amino-3-(4-hydroxyphenyl)propanoic ac synonym: "L-tyrosine transport" NARROW [] is_a: GO:0006865 ! amino acid transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:58315 ! L-tyrosine zwitterion -relationship: has_primary_input CHEBI:58315 ! L-tyrosine zwitterion +intersection_of: RO:0004009 CHEBI:58315 ! has primary input L-tyrosine zwitterion +relationship: RO:0004009 CHEBI:58315 ! has primary input L-tyrosine zwitterion [Term] id: GO:0015833 @@ -57467,8 +57323,8 @@ def: "The directed movement of peptides, compounds of two or more amino acids wh subset: goslim_pir is_a: GO:0042886 ! amide transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:60466 ! peptide zwitterion -relationship: has_primary_input CHEBI:60466 ! peptide zwitterion +intersection_of: RO:0004009 CHEBI:60466 ! has primary input peptide zwitterion +relationship: RO:0004009 CHEBI:60466 ! has primary input peptide zwitterion [Term] id: GO:0015837 @@ -57479,8 +57335,8 @@ subset: goslim_pir synonym: "amine/polyamine transport" RELATED [] is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:32952 ! amine -relationship: has_primary_input CHEBI:32952 ! amine +intersection_of: RO:0004009 CHEBI:32952 ! has primary input amine +relationship: RO:0004009 CHEBI:32952 ! has primary input amine [Term] id: GO:0015844 @@ -57490,8 +57346,8 @@ alt_id: GO:0015873 def: "The directed movement of monoamines, organic compounds that contain one amino group that is connected to an aromatic ring by an ethylene group (-CH2-CH2-), into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah] is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:63534 ! monoamine -relationship: has_primary_input CHEBI:63534 ! monoamine +intersection_of: RO:0004009 CHEBI:63534 ! has primary input monoamine +relationship: RO:0004009 CHEBI:63534 ! has primary input monoamine [Term] id: GO:0015849 @@ -57501,8 +57357,8 @@ def: "The directed movement of organic acids, any acidic compound containing car subset: goslim_pir is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:64709 ! organic acid -relationship: has_primary_input CHEBI:64709 ! organic acid +intersection_of: RO:0004009 CHEBI:64709 ! has primary input organic acid +relationship: RO:0004009 CHEBI:64709 ! has primary input organic acid [Term] id: GO:0015850 @@ -57512,8 +57368,8 @@ def: "The directed movement of an organic hydroxy compound (organic alcohol) int synonym: "organic alcohol transport" EXACT [] is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:33822 ! organic hydroxy compound -relationship: has_primary_input CHEBI:33822 ! organic hydroxy compound +intersection_of: RO:0004009 CHEBI:33822 ! has primary input organic hydroxy compound +relationship: RO:0004009 CHEBI:33822 ! has primary input organic hydroxy compound [Term] id: GO:0015851 @@ -57523,8 +57379,8 @@ def: "The directed movement of a nucleobase, any nitrogenous base that is a cons synonym: "nucleobase transmembrane transport" EXACT [GOC:mah] is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:18282 ! nucleobase -relationship: has_primary_input CHEBI:18282 ! nucleobase +intersection_of: RO:0004009 CHEBI:18282 ! has primary input nucleobase +relationship: RO:0004009 CHEBI:18282 ! has primary input nucleobase [Term] id: GO:0015853 @@ -57534,8 +57390,8 @@ def: "The directed movement of adenine, 6-aminopurine, into, out of or within a synonym: "adenine transmembrane transport" EXACT [GOC:mah] is_a: GO:0006863 ! purine nucleobase transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:16708 ! adenine -relationship: has_primary_input CHEBI:16708 ! adenine +intersection_of: RO:0004009 CHEBI:16708 ! has primary input adenine +relationship: RO:0004009 CHEBI:16708 ! has primary input adenine [Term] id: GO:0015858 @@ -57545,8 +57401,8 @@ def: "The directed movement of a nucleoside, a nucleobase linked to either beta- is_a: GO:0015931 ! nucleobase-containing compound transport is_a: GO:1901264 ! carbohydrate derivative transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:33838 ! nucleoside -relationship: has_primary_input CHEBI:33838 ! nucleoside +intersection_of: RO:0004009 CHEBI:33838 ! has primary input nucleoside +relationship: RO:0004009 CHEBI:33838 ! has primary input nucleoside [Term] id: GO:0015859 @@ -57556,8 +57412,8 @@ def: "The directed movement of a nucleoside, a nucleobase linked to either beta- is_a: GO:0015858 ! nucleoside transport is_a: GO:0046907 ! intracellular transport intersection_of: GO:0015858 ! nucleoside transport -intersection_of: occurs_in GO:0005622 ! intracellular anatomical structure -relationship: occurs_in GO:0005622 ! intracellular anatomical structure +intersection_of: BFO:0000066 GO:0005622 ! occurs in intracellular anatomical structure +relationship: BFO:0000066 GO:0005622 ! occurs in intracellular anatomical structure [Term] id: GO:0015860 @@ -57571,10 +57427,10 @@ synonym: "purine nucleoside transport" BROAD [GOC:vw] is_a: GO:0072530 ! purine-containing compound transmembrane transport is_a: GO:1901642 ! nucleoside transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:26394 ! purine nucleoside -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:26394 ! purine nucleoside -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:26394 ! has primary input purine nucleoside +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:26394 ! has primary input purine nucleoside [Term] id: GO:0015865 @@ -57583,8 +57439,8 @@ namespace: biological_process def: "The directed movement of a purine nucleotide, any compound consisting of a purine nucleoside esterified with (ortho)phosphate, into, out of or within a cell." [GOC:ai] is_a: GO:0006862 ! nucleotide transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:26395 ! purine nucleotide -relationship: has_primary_input CHEBI:26395 ! purine nucleotide +intersection_of: RO:0004009 CHEBI:26395 ! has primary input purine nucleotide +relationship: RO:0004009 CHEBI:26395 ! has primary input purine nucleotide [Term] id: GO:0015866 @@ -57593,8 +57449,8 @@ namespace: biological_process def: "The directed movement of ADP, adenosine diphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] is_a: GO:0015711 ! organic anion transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:456216 ! ADP(3-) -relationship: has_primary_input CHEBI:456216 ! ADP(3-) +intersection_of: RO:0004009 CHEBI:456216 ! has primary input ADP(3-) +relationship: RO:0004009 CHEBI:456216 ! has primary input ADP(3-) [Term] id: GO:0015867 @@ -57603,8 +57459,8 @@ namespace: biological_process def: "The directed movement of ATP, adenosine triphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] is_a: GO:0015711 ! organic anion transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:30616 ! ATP(4-) -relationship: has_primary_input CHEBI:30616 ! ATP(4-) +intersection_of: RO:0004009 CHEBI:30616 ! has primary input ATP(4-) +relationship: RO:0004009 CHEBI:30616 ! has primary input ATP(4-) [Term] id: GO:0015868 @@ -57614,21 +57470,8 @@ def: "The directed movement of a purine ribonucleotide, any compound consisting is_a: GO:0015865 ! purine nucleotide transport is_a: GO:1901264 ! carbohydrate derivative transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:26400 ! purine ribonucleotide -relationship: has_primary_input CHEBI:26400 ! purine ribonucleotide - -[Term] -id: GO:0015869 -name: protein-DNA complex transport -namespace: biological_process -def: "The directed movement of protein-DNA complexes into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] -synonym: "DNA-protein complex transport" EXACT [GOC:mah] -is_a: GO:0006886 ! intracellular protein transport -is_a: GO:0015931 ! nucleobase-containing compound transport -is_a: GO:0031503 ! protein-containing complex localization -intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input GO:0032993 ! protein-DNA complex -relationship: has_primary_input GO:0032993 ! protein-DNA complex +intersection_of: RO:0004009 CHEBI:26400 ! has primary input purine ribonucleotide +relationship: RO:0004009 CHEBI:26400 ! has primary input purine ribonucleotide [Term] id: GO:0015870 @@ -57639,8 +57482,8 @@ is_a: GO:0015695 ! organic cation transport is_a: GO:0071705 ! nitrogen compound transport is_a: GO:1901374 ! acetate ester transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:15355 ! acetylcholine -relationship: has_primary_input CHEBI:15355 ! acetylcholine +intersection_of: RO:0004009 CHEBI:15355 ! has primary input acetylcholine +relationship: RO:0004009 CHEBI:15355 ! has primary input acetylcholine [Term] id: GO:0015871 @@ -57650,8 +57493,8 @@ def: "The directed movement of choline into, out of or within a cell, or between is_a: GO:0015695 ! organic cation transport is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:15354 ! choline -relationship: has_primary_input CHEBI:15354 ! choline +intersection_of: RO:0004009 CHEBI:15354 ! has primary input choline +relationship: RO:0004009 CHEBI:15354 ! has primary input choline [Term] id: GO:0015872 @@ -57660,8 +57503,8 @@ namespace: biological_process def: "The directed movement of dopamine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Dopamine is a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline." [GOC:ai] is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:59905 ! dopaminium(1+) -relationship: has_primary_input CHEBI:59905 ! dopaminium(1+) +intersection_of: RO:0004009 CHEBI:59905 ! has primary input dopaminium(1+) +relationship: RO:0004009 CHEBI:59905 ! has primary input dopaminium(1+) [Term] id: GO:0015874 @@ -57673,8 +57516,8 @@ synonym: "noradrenaline transport" EXACT [] is_a: GO:0015695 ! organic cation transport is_a: GO:0051937 ! catecholamine transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) -relationship: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) +intersection_of: RO:0004009 CHEBI:72587 ! has primary input (R)-noradrenaline(1+) +relationship: RO:0004009 CHEBI:72587 ! has primary input (R)-noradrenaline(1+) [Term] id: GO:0015895 @@ -57683,8 +57526,8 @@ namespace: biological_process def: "The directed movement of alkanes into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Alkanes are saturated aliphatic hydrocarbon compounds." [GOC:ai] is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:18310 ! alkane -relationship: has_primary_input CHEBI:18310 ! alkane +intersection_of: RO:0004009 CHEBI:18310 ! has primary input alkane +relationship: RO:0004009 CHEBI:18310 ! has primary input alkane [Term] id: GO:0015908 @@ -57694,8 +57537,8 @@ def: "The directed movement of fatty acids into, out of or within a cell, or bet is_a: GO:0006869 ! lipid transport is_a: GO:0015718 ! monocarboxylic acid transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:28868 ! fatty acid anion -relationship: has_primary_input CHEBI:28868 ! fatty acid anion +intersection_of: RO:0004009 CHEBI:28868 ! has primary input fatty acid anion +relationship: RO:0004009 CHEBI:28868 ! has primary input fatty acid anion [Term] id: GO:0015912 @@ -57705,8 +57548,8 @@ def: "The directed movement of short-chain fatty acids into, out of or within a comment: While there is not universal consensus on the lengths of short-, medium-, long- and very-long-chain fatty acids, the GO uses the definitions in ChEBI (see CHEBI:26666, CHEBI:59554, CHEBI:15904 and CHEBI:27283). is_a: GO:0015908 ! fatty acid transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:58951 ! short-chain fatty acid anion -relationship: has_primary_input CHEBI:58951 ! short-chain fatty acid anion +intersection_of: RO:0004009 CHEBI:58951 ! has primary input short-chain fatty acid anion +relationship: RO:0004009 CHEBI:58951 ! has primary input short-chain fatty acid anion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26445" xsd:anyURI [Term] @@ -57720,8 +57563,8 @@ synonym: "short-chain fatty acid uptake" EXACT [] is_a: GO:0015912 ! short-chain fatty acid transport is_a: GO:1902001 ! fatty acid transmembrane transport intersection_of: GO:0055085 ! transmembrane transport -intersection_of: has_primary_input CHEBI:58951 ! short-chain fatty acid anion -relationship: has_primary_input CHEBI:58951 ! short-chain fatty acid anion +intersection_of: RO:0004009 CHEBI:58951 ! has primary input short-chain fatty acid anion +relationship: RO:0004009 CHEBI:58951 ! has primary input short-chain fatty acid anion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24587" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26445" xsd:anyURI @@ -57733,8 +57576,8 @@ def: "The directed movement of phospholipids into, out of or within a cell, or b is_a: GO:0006869 ! lipid transport is_a: GO:0015748 ! organophosphate ester transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:16247 ! phospholipid -relationship: has_primary_input CHEBI:16247 ! phospholipid +intersection_of: RO:0004009 CHEBI:16247 ! has primary input phospholipid +relationship: RO:0004009 CHEBI:16247 ! has primary input phospholipid [Term] id: GO:0015931 @@ -57746,8 +57589,8 @@ subset: goslim_yeast synonym: "nucleobase, nucleoside, nucleotide and nucleic acid transport" RELATED [GOC:dph, GOC:tb] is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:61120 ! nucleobase-containing molecular entity -relationship: has_primary_input CHEBI:61120 ! nucleobase-containing molecular entity +intersection_of: RO:0004009 CHEBI:61120 ! has primary input nucleobase-containing molecular entity +relationship: RO:0004009 CHEBI:61120 ! has primary input nucleobase-containing molecular entity [Term] id: GO:0015932 @@ -57757,9 +57600,9 @@ def: "Enables the transfer of nucleobases, nucleosides, nucleotides and nucleic synonym: "nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter activity" RELATED [GOC:dph, GOC:tb] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:61120 ! nucleobase-containing molecular entity -relationship: has_primary_input CHEBI:61120 ! nucleobase-containing molecular entity +intersection_of: RO:0004009 CHEBI:61120 ! has primary input nucleobase-containing molecular entity relationship: part_of GO:0015931 ! nucleobase-containing compound transport +relationship: RO:0004009 CHEBI:61120 ! has primary input nucleobase-containing molecular entity [Term] id: GO:0015942 @@ -57769,8 +57612,8 @@ def: "The chemical reactions and pathways involving formate, also known as metha synonym: "formate metabolism" EXACT [] is_a: GO:0032787 ! monocarboxylic acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:15740 ! formate -relationship: has_primary_input_or_output CHEBI:15740 ! formate +intersection_of: RO:0004007 CHEBI:15740 ! has primary input or output formate +relationship: RO:0004007 CHEBI:15740 ! has primary input or output formate [Term] id: GO:0015943 @@ -57786,8 +57629,8 @@ synonym: "formic acid biosynthetic process" EXACT [] is_a: GO:0015942 ! formate metabolic process is_a: GO:0072330 ! monocarboxylic acid biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:15740 ! formate -relationship: has_primary_output CHEBI:15740 ! formate +intersection_of: RO:0004008 CHEBI:15740 ! has primary output formate +relationship: RO:0004008 CHEBI:15740 ! has primary output formate [Term] id: GO:0015980 @@ -57820,7 +57663,7 @@ synonym: "transmembrane" RELATED [GOC:mah] synonym: "whole membrane" NARROW [] xref: Wikipedia:Biological_membrane xref: Wikipedia:Transmembrane_protein -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure disjoint_from: GO:0031012 ! extracellular matrix creation_date: 2014-03-06T11:37:54Z @@ -57841,8 +57684,8 @@ xref: Wikipedia:Lipid_catabolism is_a: GO:0006629 ! lipid metabolic process is_a: GO:0009056 ! catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:18059 ! lipid -relationship: has_primary_input CHEBI:18059 ! lipid +intersection_of: RO:0004009 CHEBI:18059 ! has primary input lipid +relationship: RO:0004009 CHEBI:18059 ! has primary input lipid [Term] id: GO:0016043 @@ -57865,8 +57708,8 @@ synonym: "cellular component organization at cellular level" EXACT [] synonym: "cellular component organization in other organism" EXACT [] is_a: GO:0071840 ! cellular component organization or biogenesis intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_organization_of GO:0005575 ! cellular_component -relationship: results_in_organization_of GO:0005575 ! cellular_component +intersection_of: RO:0002592 GO:0005575 ! results in organization of cellular_component +relationship: RO:0002592 GO:0005575 ! results in organization of cellular_component [Term] id: GO:0016048 @@ -57900,8 +57743,8 @@ synonym: "non-developmental growth of a unicellular organism" RELATED [GOC:mah] is_a: GO:0009987 ! cellular process is_a: GO:0040007 ! growth intersection_of: GO:0040007 ! growth -intersection_of: results_in_growth_of CL:0000000 ! cell -relationship: results_in_growth_of CL:0000000 ! cell +intersection_of: RO:0002343 CL:0000000 ! results in growth of cell +relationship: RO:0002343 CL:0000000 ! results in growth of cell [Term] id: GO:0016050 @@ -57914,8 +57757,8 @@ synonym: "vesicle organisation" EXACT [] synonym: "vesicle organization and biogenesis" RELATED [GOC:mah] is_a: GO:0006996 ! organelle organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0031982 ! vesicle -relationship: results_in_organization_of GO:0031982 ! vesicle +intersection_of: RO:0002592 GO:0031982 ! results in organization of vesicle +relationship: RO:0002592 GO:0031982 ! results in organization of vesicle [Term] id: GO:0016051 @@ -57932,8 +57775,8 @@ synonym: "carbohydrate synthesis" EXACT [] is_a: GO:0005975 ! carbohydrate metabolic process is_a: GO:0009058 ! biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:16646 ! carbohydrate -relationship: has_primary_output CHEBI:16646 ! carbohydrate +intersection_of: RO:0004008 CHEBI:16646 ! has primary output carbohydrate +relationship: RO:0004008 CHEBI:16646 ! has primary output carbohydrate [Term] id: GO:0016052 @@ -57953,8 +57796,8 @@ synonym: "single-organism carbohydrate catabolic process" RELATED [] is_a: GO:0005975 ! carbohydrate metabolic process is_a: GO:0009056 ! catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:16646 ! carbohydrate -relationship: has_primary_input CHEBI:16646 ! carbohydrate +intersection_of: RO:0004009 CHEBI:16646 ! has primary input carbohydrate +relationship: RO:0004009 CHEBI:16646 ! has primary input carbohydrate created_by: jl creation_date: 2012-10-23T16:34:39Z @@ -57968,11 +57811,10 @@ synonym: "organic acid biosynthesis" EXACT [] synonym: "organic acid formation" EXACT [] synonym: "organic acid synthesis" EXACT [] is_a: GO:0006082 ! organic acid metabolic process -is_a: GO:0044249 ! cellular biosynthetic process is_a: GO:0044283 ! small molecule biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:64709 ! organic acid -relationship: has_primary_output CHEBI:64709 ! organic acid +intersection_of: RO:0004008 CHEBI:64709 ! has primary output organic acid +relationship: RO:0004008 CHEBI:64709 ! has primary output organic acid [Term] id: GO:0016054 @@ -57986,8 +57828,8 @@ is_a: GO:0006082 ! organic acid metabolic process is_a: GO:0044248 ! cellular catabolic process is_a: GO:0044282 ! small molecule catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:64709 ! organic acid -relationship: has_primary_input CHEBI:64709 ! organic acid +intersection_of: RO:0004009 CHEBI:64709 ! has primary input organic acid +relationship: RO:0004009 CHEBI:64709 ! has primary input organic acid [Term] id: GO:0016057 @@ -57997,8 +57839,8 @@ def: "Hyperpolarization (vertebrates) or depolarization (invertebrates) of the p synonym: "changes in polarization state of photoreceptor cell membrane" EXACT [GOC:dph, GOC:tb] is_a: GO:0042391 ! regulation of membrane potential intersection_of: GO:0042391 ! regulation of membrane potential -intersection_of: occurs_in CL:0000210 ! photoreceptor cell -relationship: occurs_in CL:0000210 ! photoreceptor cell +intersection_of: BFO:0000066 CL:0000210 ! occurs in photoreceptor cell +relationship: BFO:0000066 CL:0000210 ! occurs in photoreceptor cell [Term] id: GO:0016064 @@ -58022,8 +57864,8 @@ subset: goslim_prokaryote synonym: "RNA metabolism" EXACT [] is_a: GO:0090304 ! nucleic acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:33697 ! ribonucleic acid -relationship: has_primary_input_or_output CHEBI:33697 ! ribonucleic acid +intersection_of: RO:0004007 CHEBI:33697 ! has primary input or output ribonucleic acid +relationship: RO:0004007 CHEBI:33697 ! has primary input or output ribonucleic acid [Term] id: GO:0016079 @@ -58036,8 +57878,8 @@ is_a: GO:0051649 ! establishment of localization in cell is_a: GO:0099003 ! vesicle-mediated transport in synapse is_a: GO:0099643 ! signal release from synapse intersection_of: GO:0045055 ! regulated exocytosis -intersection_of: occurs_in GO:0098793 ! presynapse -relationship: occurs_in GO:0098793 ! presynapse +intersection_of: BFO:0000066 GO:0098793 ! occurs in presynapse +relationship: BFO:0000066 GO:0098793 ! occurs in presynapse relationship: part_of GO:0007269 ! neurotransmitter secretion relationship: part_of GO:0099504 ! synaptic vesicle cycle @@ -58053,8 +57895,8 @@ synonym: "sesquiterpenoid synthesis" EXACT [] is_a: GO:0006714 ! sesquiterpenoid metabolic process is_a: GO:0016114 ! terpenoid biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26658 ! sesquiterpenoid -relationship: has_primary_output CHEBI:26658 ! sesquiterpenoid +intersection_of: RO:0004008 CHEBI:26658 ! has primary output sesquiterpenoid +relationship: RO:0004008 CHEBI:26658 ! has primary output sesquiterpenoid [Term] id: GO:0016107 @@ -58067,8 +57909,8 @@ synonym: "sesquiterpenoid degradation" EXACT [] is_a: GO:0006714 ! sesquiterpenoid metabolic process is_a: GO:0016115 ! terpenoid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:26658 ! sesquiterpenoid -relationship: has_primary_input CHEBI:26658 ! sesquiterpenoid +intersection_of: RO:0004009 CHEBI:26658 ! has primary input sesquiterpenoid +relationship: RO:0004009 CHEBI:26658 ! has primary input sesquiterpenoid [Term] id: GO:0016108 @@ -58080,8 +57922,8 @@ synonym: "tetraterpene metabolism" NARROW [] synonym: "tetraterpenoid metabolism" EXACT [] is_a: GO:0006721 ! terpenoid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26935 ! tetraterpenoid -relationship: has_primary_input_or_output CHEBI:26935 ! tetraterpenoid +intersection_of: RO:0004007 CHEBI:26935 ! has primary input or output tetraterpenoid +relationship: RO:0004007 CHEBI:26935 ! has primary input or output tetraterpenoid [Term] id: GO:0016109 @@ -58097,8 +57939,8 @@ synonym: "tetraterpenoid synthesis" EXACT [] is_a: GO:0016108 ! tetraterpenoid metabolic process is_a: GO:0016114 ! terpenoid biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26935 ! tetraterpenoid -relationship: has_primary_output CHEBI:26935 ! tetraterpenoid +intersection_of: RO:0004008 CHEBI:26935 ! has primary output tetraterpenoid +relationship: RO:0004008 CHEBI:26935 ! has primary output tetraterpenoid [Term] id: GO:0016110 @@ -58113,8 +57955,8 @@ synonym: "tetraterpenoid degradation" EXACT [] is_a: GO:0016108 ! tetraterpenoid metabolic process is_a: GO:0016115 ! terpenoid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:26935 ! tetraterpenoid -relationship: has_primary_input CHEBI:26935 ! tetraterpenoid +intersection_of: RO:0004009 CHEBI:26935 ! has primary input tetraterpenoid +relationship: RO:0004009 CHEBI:26935 ! has primary input tetraterpenoid [Term] id: GO:0016114 @@ -58129,8 +57971,8 @@ xref: Wikipedia:Terpenoid is_a: GO:0006721 ! terpenoid metabolic process is_a: GO:0008299 ! isoprenoid biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26873 ! terpenoid -relationship: has_primary_output CHEBI:26873 ! terpenoid +intersection_of: RO:0004008 CHEBI:26873 ! has primary output terpenoid +relationship: RO:0004008 CHEBI:26873 ! has primary output terpenoid [Term] id: GO:0016115 @@ -58143,8 +57985,8 @@ synonym: "terpenoid degradation" EXACT [] is_a: GO:0006721 ! terpenoid metabolic process is_a: GO:0008300 ! isoprenoid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:26873 ! terpenoid -relationship: has_primary_input CHEBI:26873 ! terpenoid +intersection_of: RO:0004009 CHEBI:26873 ! has primary input terpenoid +relationship: RO:0004009 CHEBI:26873 ! has primary input terpenoid [Term] id: GO:0016116 @@ -58154,10 +57996,10 @@ def: "The chemical reactions and pathways involving carotenoids, tetraterpenoid synonym: "carotenoid metabolism" EXACT [] is_a: GO:0016108 ! tetraterpenoid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:23044 ! carotenoid -relationship: has_primary_input_or_output CHEBI:23044 ! carotenoid +intersection_of: RO:0004007 CHEBI:23044 ! has primary input or output carotenoid relationship: never_in_taxon NCBITaxon:4896 ! Schizosaccharomyces pombe relationship: never_in_taxon NCBITaxon:4932 ! Saccharomyces cerevisiae +relationship: RO:0004007 CHEBI:23044 ! has primary input or output carotenoid [Term] id: GO:0016117 @@ -58173,8 +58015,8 @@ is_a: GO:0016109 ! tetraterpenoid biosynthetic process is_a: GO:0016116 ! carotenoid metabolic process is_a: GO:0046148 ! pigment biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:23044 ! carotenoid -relationship: has_primary_output CHEBI:23044 ! carotenoid +intersection_of: RO:0004008 CHEBI:23044 ! has primary output carotenoid +relationship: RO:0004008 CHEBI:23044 ! has primary output carotenoid [Term] id: GO:0016118 @@ -58187,8 +58029,8 @@ synonym: "carotenoid degradation" EXACT [] is_a: GO:0016110 ! tetraterpenoid catabolic process is_a: GO:0016116 ! carotenoid metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:23044 ! carotenoid -relationship: has_primary_input CHEBI:23044 ! carotenoid +intersection_of: RO:0004009 CHEBI:23044 ! has primary input carotenoid +relationship: RO:0004009 CHEBI:23044 ! has primary input carotenoid [Term] id: GO:0016119 @@ -58198,8 +58040,8 @@ def: "The chemical reactions and pathways involving carotenes, hydrocarbon carot synonym: "carotene metabolism" EXACT [] is_a: GO:0042214 ! terpene metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:23042 ! carotene -relationship: has_primary_input_or_output CHEBI:23042 ! carotene +intersection_of: RO:0004007 CHEBI:23042 ! has primary input or output carotene +relationship: RO:0004007 CHEBI:23042 ! has primary input or output carotene [Term] id: GO:0016120 @@ -58213,10 +58055,10 @@ synonym: "carotene synthesis" EXACT [] is_a: GO:0016119 ! carotene metabolic process is_a: GO:0046246 ! terpene biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:23042 ! carotene -relationship: has_primary_output CHEBI:23042 ! carotene +intersection_of: RO:0004008 CHEBI:23042 ! has primary output carotene relationship: in_taxon NCBITaxon:33090 {all_only="true"} ! Viridiplantae -relationship: only_in_taxon NCBITaxon:33090 ! Viridiplantae +relationship: RO:0002160 NCBITaxon:33090 ! only in taxon Viridiplantae +relationship: RO:0004008 CHEBI:23042 ! has primary output carotene [Term] id: GO:0016121 @@ -58229,8 +58071,8 @@ synonym: "carotene degradation" EXACT [] is_a: GO:0016119 ! carotene metabolic process is_a: GO:0046247 ! terpene catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:23042 ! carotene -relationship: has_primary_input CHEBI:23042 ! carotene +intersection_of: RO:0004009 CHEBI:23042 ! has primary input carotene +relationship: RO:0004009 CHEBI:23042 ! has primary input carotene [Term] id: GO:0016122 @@ -58240,8 +58082,8 @@ def: "The chemical reactions and pathways involving xanthophylls, oxygen-contain synonym: "xanthophyll metabolism" EXACT [] is_a: GO:0016116 ! carotenoid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:27325 ! xanthophyll -relationship: has_primary_input_or_output CHEBI:27325 ! xanthophyll +intersection_of: RO:0004007 CHEBI:27325 ! has primary input or output xanthophyll +relationship: RO:0004007 CHEBI:27325 ! has primary input or output xanthophyll [Term] id: GO:0016123 @@ -58255,8 +58097,8 @@ synonym: "xanthophyll synthesis" EXACT [] is_a: GO:0016117 ! carotenoid biosynthetic process is_a: GO:0016122 ! xanthophyll metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:27325 ! xanthophyll -relationship: has_primary_output CHEBI:27325 ! xanthophyll +intersection_of: RO:0004008 CHEBI:27325 ! has primary output xanthophyll +relationship: RO:0004008 CHEBI:27325 ! has primary output xanthophyll [Term] id: GO:0016124 @@ -58269,8 +58111,8 @@ synonym: "xanthophyll degradation" EXACT [] is_a: GO:0016118 ! carotenoid catabolic process is_a: GO:0016122 ! xanthophyll metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:27325 ! xanthophyll -relationship: has_primary_input CHEBI:27325 ! xanthophyll +intersection_of: RO:0004009 CHEBI:27325 ! has primary input xanthophyll +relationship: RO:0004009 CHEBI:27325 ! has primary input xanthophyll [Term] id: GO:0016192 @@ -58293,8 +58135,8 @@ synonym: "vesicular transport" EXACT [GOC:mah] is_a: GO:0006810 ! transport is_a: GO:0009987 ! cellular process intersection_of: GO:0006810 ! transport -intersection_of: process_has_causal_agent GO:0031982 ! vesicle -relationship: process_has_causal_agent GO:0031982 ! vesicle +intersection_of: RO:0002608 GO:0031982 ! process has causal agent vesicle +relationship: RO:0002608 GO:0031982 ! process has causal agent vesicle property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/25421" xsd:anyURI [Term] @@ -58305,8 +58147,8 @@ def: "Any process that modulates the frequency, rate or extent of striated muscl is_a: GO:0048634 ! regulation of muscle organ development is_a: GO:1901861 ! regulation of muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014706 ! striated muscle tissue development -relationship: regulates GO:0014706 ! striated muscle tissue development +intersection_of: RO:0002211 GO:0014706 ! regulates (processual) striated muscle tissue development +relationship: RO:0002211 GO:0014706 ! regulates (processual) striated muscle tissue development [Term] id: GO:0016301 @@ -58330,7 +58172,7 @@ id: GO:0016310 name: phosphorylation namespace: biological_process def: "The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide." [ISBN:0198506732] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate subset: goslim_chembl subset: goslim_metagenomics xref: Wikipedia:Phosphorylation @@ -58344,9 +58186,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the mushroom body over time, from its formation to the mature structure. The mushroom body is composed of the prominent neuropil structures of the insect central brain, thought to be crucial for olfactory associated learning. These consist mainly of a bulbous calyx and tightly packaged arrays of thin parallel fibers of the Kenyon cells." [PMID:8790424] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001058 ! mushroom body +intersection_of: RO:0002296 UBERON:0001058 ! results in development of mushroom body relationship: part_of GO:0007420 ! brain development -relationship: results_in_development_of UBERON:0001058 ! mushroom body +relationship: RO:0002296 UBERON:0001058 ! results in development of mushroom body [Term] id: GO:0016321 @@ -58367,11 +58209,11 @@ def: "Formation and maintenance of a polarized microtubule array originating fro synonym: "oocyte microtubule cytoskeleton organisation" EXACT [] is_a: GO:0030951 ! establishment or maintenance of microtubule cytoskeleton polarity intersection_of: GO:0016043 ! cellular component organization -intersection_of: occurs_in CL:0000023 ! oocyte -intersection_of: results_in_organization_of GO:0015630 ! microtubule cytoskeleton -relationship: occurs_in CL:0000023 ! oocyte +intersection_of: BFO:0000066 CL:0000023 ! occurs in oocyte +intersection_of: RO:0002592 GO:0015630 ! results in organization of microtubule cytoskeleton +relationship: BFO:0000066 CL:0000023 ! occurs in oocyte relationship: part_of GO:0007308 ! oocyte construction -relationship: results_in_organization_of GO:0015630 ! microtubule cytoskeleton +relationship: RO:0002592 GO:0015630 ! results in organization of microtubule cytoskeleton [Term] id: GO:0016331 @@ -58389,8 +58231,8 @@ def: "The process whose specific outcome is the progression of the dendrite over is_a: GO:0031175 ! neuron projection development is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of GO:0030425 ! dendrite -relationship: results_in_development_of GO:0030425 ! dendrite +intersection_of: RO:0002296 GO:0030425 ! results in development of dendrite +relationship: RO:0002296 GO:0030425 ! results in development of dendrite [Term] id: GO:0016444 @@ -58444,8 +58286,8 @@ namespace: biological_process def: "The directed movement of substances or organelles within the cytosol." [GOC:ai] is_a: GO:0046907 ! intracellular transport intersection_of: GO:0006810 ! transport -intersection_of: occurs_in GO:0005829 ! cytosol -relationship: occurs_in GO:0005829 ! cytosol +intersection_of: BFO:0000066 GO:0005829 ! occurs in cytosol +relationship: BFO:0000066 GO:0005829 ! occurs in cytosol property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26386" xsd:anyURI [Term] @@ -58471,8 +58313,8 @@ is_a: GO:0042445 ! hormone metabolic process is_a: GO:0043603 ! amide metabolic process is_a: GO:0140448 ! signaling receptor ligand precursor processing intersection_of: GO:0016485 ! protein processing -intersection_of: has_primary_input_or_output CHEBI:25905 ! peptide hormone -relationship: has_primary_input_or_output CHEBI:25905 ! peptide hormone +intersection_of: RO:0004007 CHEBI:25905 ! has primary input or output peptide hormone +relationship: RO:0004007 CHEBI:25905 ! has primary input or output peptide hormone [Term] id: GO:0016500 @@ -58488,9 +58330,9 @@ namespace: molecular_function def: "Combining with a nucleotide and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. A nucleotide is a compound that consists of a nucleoside esterified with a phosphate molecule." [GOC:signaling, ISBN:0198506732] is_a: GO:0004888 ! transmembrane signaling receptor activity intersection_of: GO:0038023 ! signaling receptor activity -intersection_of: has_primary_input CHEBI:36976 ! nucleotide +intersection_of: RO:0004009 CHEBI:36976 ! has primary input nucleotide relationship: has_part GO:0000166 ! nucleotide binding -relationship: has_primary_input CHEBI:36976 ! nucleotide +relationship: RO:0004009 CHEBI:36976 ! has primary input nucleotide [Term] id: GO:0016525 @@ -58504,8 +58346,8 @@ synonym: "inhibition of angiogenesis" NARROW [] is_a: GO:0045765 ! regulation of angiogenesis is_a: GO:2000181 ! negative regulation of blood vessel morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001525 ! angiogenesis -relationship: negatively_regulates GO:0001525 ! angiogenesis +intersection_of: RO:0002212 GO:0001525 ! negatively regulates angiogenesis +relationship: RO:0002212 GO:0001525 ! negatively regulates angiogenesis [Term] id: GO:0016528 @@ -58528,8 +58370,8 @@ def: "Binding to glutamate, the anion of 2-aminopentanedioic acid." [GOC:ai] synonym: "glutamic acid binding" EXACT [] is_a: GO:0031406 ! carboxylic acid binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:14321 ! glutamate(1-) -relationship: has_primary_input CHEBI:14321 ! glutamate(1-) +intersection_of: RO:0004009 CHEBI:14321 ! has primary input glutamate(1-) +relationship: RO:0004009 CHEBI:14321 ! has primary input glutamate(1-) [Term] id: GO:0016597 @@ -58540,14 +58382,14 @@ subset: goslim_metagenomics subset: goslim_pir is_a: GO:0005488 ! binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion -relationship: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion +relationship: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion [Term] id: GO:0016740 name: transferase activity namespace: molecular_function -def: "Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2." [ISBN:0198506732] +def: "Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2." [EC:2.-.-.-] subset: goslim_candida subset: goslim_chembl subset: goslim_drosophila @@ -58579,7 +58421,7 @@ is_a: GO:0016740 ! transferase activity id: GO:0016773 name: phosphotransferase activity, alcohol group as acceptor namespace: molecular_function -def: "Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor)." [GOC:jl] +def: "Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor)." [EC:2.7.1.-] subset: goslim_drosophila xref: EC:2.7.1.- xref: Reactome:R-HSA-2161193 "abacavir + AMP => abacavir monophosphate + adenosine" @@ -58636,13 +58478,14 @@ synonym: "G protein coupled acetylcholine receptor activity" EXACT [] synonym: "G-protein coupled acetylcholine receptor activity" EXACT [] synonym: "metabotropic acetylcholine receptor activity" EXACT [] synonym: "muscarinic acetylcholine receptor activity" EXACT [] +xref: Reactome:R-HSA-400012 "Acetylcholine binds Muscarinic Acetylcholine Receptor M3" is_a: GO:0008227 ! G protein-coupled amine receptor activity is_a: GO:0015464 ! acetylcholine receptor activity is_a: GO:0099528 ! G protein-coupled neurotransmitter receptor activity intersection_of: GO:0004930 ! G protein-coupled receptor activity -intersection_of: has_primary_input CHEBI:15355 ! acetylcholine -relationship: has_primary_input CHEBI:15355 ! acetylcholine +intersection_of: RO:0004009 CHEBI:15355 ! has primary input acetylcholine relationship: part_of GO:0007213 ! G protein-coupled acetylcholine receptor signaling pathway +relationship: RO:0004009 CHEBI:15355 ! has primary input acetylcholine [Term] id: GO:0016917 @@ -58658,8 +58501,8 @@ synonym: "gamma-aminobutyric acid binding" EXACT [] synonym: "gamma-aminobutyric acid receptor activity" EXACT [] is_a: GO:0004888 ! transmembrane signaling receptor activity intersection_of: GO:0038023 ! signaling receptor activity -intersection_of: has_primary_input CHEBI:59888 ! gamma-aminobutyric acid zwitterion -relationship: has_primary_input CHEBI:59888 ! gamma-aminobutyric acid zwitterion +intersection_of: RO:0004009 CHEBI:59888 ! has primary input gamma-aminobutyric acid zwitterion +relationship: RO:0004009 CHEBI:59888 ! has primary input gamma-aminobutyric acid zwitterion [Term] id: GO:0017046 @@ -58670,27 +58513,8 @@ synonym: "polypeptide hormone binding" EXACT [] is_a: GO:0033218 ! amide binding is_a: GO:0042562 ! hormone binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:25905 ! peptide hormone -relationship: has_primary_input CHEBI:25905 ! peptide hormone - -[Term] -id: GO:0017053 -name: transcription repressor complex -namespace: cellular_component -alt_id: GO:0090568 -alt_id: GO:0090569 -def: "A protein complex that possesses activity that prevents or downregulates transcription." [GOC:mah] -subset: goslim_pir -synonym: "cytoplasmic transcriptional repressor complex" RELATED [] -synonym: "nuclear transcriptional repressor complex" RELATED [] -synonym: "transcription factor inhibitor complex" EXACT [GOC:bhm] -synonym: "transcriptional repressor complex" EXACT [] -is_a: GO:0005667 ! transcription regulator complex -intersection_of: GO:0032991 ! protein-containing complex -intersection_of: capable_of GO:0001217 ! DNA-binding transcription repressor activity -relationship: capable_of GO:0001217 ! DNA-binding transcription repressor activity -created_by: tb -creation_date: 2014-05-09T13:23:51Z +intersection_of: RO:0004009 CHEBI:25905 ! has primary input peptide hormone +relationship: RO:0004009 CHEBI:25905 ! has primary input peptide hormone [Term] id: GO:0017076 @@ -58699,8 +58523,8 @@ namespace: molecular_function def: "Binding to a purine nucleotide, a compound consisting of a purine nucleoside esterified with (ortho)phosphate." [GOC:ai] is_a: GO:0000166 ! nucleotide binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:26395 ! purine nucleotide -relationship: has_primary_input CHEBI:26395 ! purine nucleotide +intersection_of: RO:0004009 CHEBI:26395 ! has primary input purine nucleotide +relationship: RO:0004009 CHEBI:26395 ! has primary input purine nucleotide [Term] id: GO:0017085 @@ -58721,8 +58545,8 @@ synonym: "nucleolus biogenesis" EXACT [] is_a: GO:0007000 ! nucleolus organization is_a: GO:0044085 ! cellular component biogenesis intersection_of: GO:0044085 ! cellular component biogenesis -intersection_of: has_primary_output GO:0005730 ! nucleolus -relationship: has_primary_output GO:0005730 ! nucleolus +intersection_of: RO:0004008 GO:0005730 ! has primary output nucleolus +relationship: RO:0004008 GO:0005730 ! has primary output nucleolus [Term] id: GO:0017145 @@ -58732,9 +58556,11 @@ def: "The self-renewing division of a stem cell. A stem cell is an undifferentia synonym: "stem cell renewal" EXACT [] is_a: GO:0051301 ! cell division intersection_of: GO:0051301 ! cell division -intersection_of: has_primary_input CL:0000034 ! stem cell -relationship: has_primary_input CL:0000034 ! stem cell -relationship: never_in_taxon NCBITaxon_Union:0000023 +intersection_of: RO:0004009 CL:0000034 ! has primary input stem cell +relationship: never_in_taxon NCBITaxon:2 ! Bacteria +relationship: never_in_taxon NCBITaxon:2157 ! Archaea +relationship: never_in_taxon NCBITaxon:4751 ! Fungi +relationship: RO:0004009 CL:0000034 ! has primary input stem cell [Term] id: GO:0017148 @@ -58757,9 +58583,9 @@ is_a: GO:0006417 ! regulation of translation is_a: GO:0010629 ! negative regulation of gene expression is_a: GO:0051248 ! negative regulation of protein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006412 ! translation -relationship: negatively_regulates GO:0006412 ! translation -relationship: negatively_regulates GO:0010467 ! gene expression +intersection_of: RO:0002212 GO:0006412 ! negatively regulates translation +relationship: RO:0002212 GO:0006412 ! negatively regulates translation +relationship: RO:0002212 GO:0010467 ! negatively regulates gene expression [Term] id: GO:0017157 @@ -58769,15 +58595,15 @@ def: "Any process that modulates the frequency, rate or extent of exocytosis." [ is_a: GO:0060627 ! regulation of vesicle-mediated transport is_a: GO:1903530 ! regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006887 ! exocytosis -relationship: regulates GO:0006887 ! exocytosis +intersection_of: RO:0002211 GO:0006887 ! regulates (processual) exocytosis +relationship: RO:0002211 GO:0006887 ! regulates (processual) exocytosis [Term] id: GO:0018108 name: peptidyl-tyrosine phosphorylation namespace: biological_process def: "The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine." [RESID:AA0039] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate xref: RESID:AA0039 is_a: GO:0006468 ! protein phosphorylation is_a: GO:0018212 ! peptidyl-tyrosine modification @@ -58798,8 +58624,8 @@ is_a: GO:0006024 ! glycosaminoglycan biosynthetic process is_a: GO:0042339 ! keratan sulfate metabolic process is_a: GO:0044272 ! sulfur compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:60924 ! keratan sulfate -relationship: has_primary_output CHEBI:60924 ! keratan sulfate +intersection_of: RO:0004008 CHEBI:60924 ! has primary output keratan sulfate +relationship: RO:0004008 CHEBI:60924 ! has primary output keratan sulfate [Term] id: GO:0018193 @@ -58809,14 +58635,14 @@ def: "The alteration of an amino acid residue in a peptide." [GOC:mah] subset: gocheck_do_not_annotate subset: goslim_yeast is_a: GO:0036211 ! protein modification process -relationship: has_primary_input CHEBI:33708 ! amino-acid residue +relationship: RO:0004009 CHEBI:33708 ! has primary input amino-acid residue [Term] id: GO:0018212 name: peptidyl-tyrosine modification namespace: biological_process def: "The modification of peptidyl-tyrosine." [GOC:go_curators] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate is_a: GO:0018193 ! peptidyl-amino acid modification [Term] @@ -58828,8 +58654,8 @@ synonym: "benzene metabolism" EXACT [] is_a: GO:0042537 ! benzene-containing compound metabolic process is_a: GO:0120252 ! hydrocarbon metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:16716 ! benzene -relationship: has_primary_input_or_output CHEBI:16716 ! benzene +intersection_of: RO:0004007 CHEBI:16716 ! has primary input or output benzene +relationship: RO:0004007 CHEBI:16716 ! has primary input or output benzene [Term] id: GO:0018958 @@ -58845,8 +58671,8 @@ synonym: "phenol-containing compound metabolism" EXACT [] xref: UM-BBD_pathwayID:phe is_a: GO:1901615 ! organic hydroxy compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:33853 ! phenols -relationship: has_primary_input_or_output CHEBI:33853 ! phenols +intersection_of: RO:0004007 CHEBI:33853 ! has primary input or output phenols +relationship: RO:0004007 CHEBI:33853 ! has primary input or output phenols [Term] id: GO:0018970 @@ -58859,8 +58685,8 @@ synonym: "toluene metabolism" EXACT [] is_a: GO:0072490 ! toluene-containing compound metabolic process is_a: GO:0120252 ! hydrocarbon metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:17578 ! toluene -relationship: has_primary_input_or_output CHEBI:17578 ! toluene +intersection_of: RO:0004007 CHEBI:17578 ! has primary input or output toluene +relationship: RO:0004007 CHEBI:17578 ! has primary input or output toluene [Term] id: GO:0018989 @@ -58909,8 +58735,8 @@ namespace: molecular_function def: "Binding to an intermediate filament, a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of higher eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space." [ISBN:0198506732] is_a: GO:0005488 ! binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input GO:0005882 ! intermediate filament -relationship: has_primary_input GO:0005882 ! intermediate filament +intersection_of: RO:0004009 GO:0005882 ! has primary input intermediate filament +relationship: RO:0004009 GO:0005882 ! has primary input intermediate filament [Term] id: GO:0019216 @@ -58920,8 +58746,8 @@ def: "Any process that modulates the frequency, rate or extent of the chemical r synonym: "regulation of lipid metabolism" EXACT [] is_a: GO:0080090 ! regulation of primary metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006629 ! lipid metabolic process -relationship: regulates GO:0006629 ! lipid metabolic process +intersection_of: RO:0002211 GO:0006629 ! regulates (processual) lipid metabolic process +relationship: RO:0002211 GO:0006629 ! regulates (processual) lipid metabolic process [Term] id: GO:0019217 @@ -58930,11 +58756,12 @@ namespace: biological_process alt_id: GO:0006632 def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving fatty acids." [GOC:go_curators] synonym: "regulation of fatty acid metabolism" EXACT [] -is_a: GO:0010565 ! regulation of cellular ketone metabolic process +is_a: GO:0010565 ! regulation of ketone metabolic process is_a: GO:0019216 ! regulation of lipid metabolic process +is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006631 ! fatty acid metabolic process -relationship: regulates GO:0006631 ! fatty acid metabolic process +intersection_of: RO:0002211 GO:0006631 ! regulates (processual) fatty acid metabolic process +relationship: RO:0002211 GO:0006631 ! regulates (processual) fatty acid metabolic process [Term] id: GO:0019218 @@ -58944,8 +58771,8 @@ def: "Any process that modulates the frequency, rate or extent of the chemical r synonym: "regulation of steroid metabolism" EXACT [] is_a: GO:0019216 ! regulation of lipid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008202 ! steroid metabolic process -relationship: regulates GO:0008202 ! steroid metabolic process +intersection_of: RO:0002211 GO:0008202 ! regulates (processual) steroid metabolic process +relationship: RO:0002211 GO:0008202 ! regulates (processual) steroid metabolic process [Term] id: GO:0019219 @@ -58956,8 +58783,8 @@ synonym: "regulation of nucleobase, nucleoside, nucleotide and nucleic acid meta synonym: "regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism" EXACT [] is_a: GO:0080090 ! regulation of primary metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006139 ! nucleobase-containing compound metabolic process -relationship: regulates GO:0006139 ! nucleobase-containing compound metabolic process +intersection_of: RO:0002211 GO:0006139 ! regulates (processual) nucleobase-containing compound metabolic process +relationship: RO:0002211 GO:0006139 ! regulates (processual) nucleobase-containing compound metabolic process [Term] id: GO:0019220 @@ -58967,8 +58794,8 @@ def: "Any process that modulates the frequency, rate or extent of the chemical r synonym: "regulation of phosphate metabolism" EXACT [] is_a: GO:0051174 ! regulation of phosphorus metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006796 ! phosphate-containing compound metabolic process -relationship: regulates GO:0006796 ! phosphate-containing compound metabolic process +intersection_of: RO:0002211 GO:0006796 ! regulates (processual) phosphate-containing compound metabolic process +relationship: RO:0002211 GO:0006796 ! regulates (processual) phosphate-containing compound metabolic process [Term] id: GO:0019221 @@ -58990,10 +58817,10 @@ subset: goslim_metagenomics synonym: "regulation of metabolism" EXACT [] synonym: "regulation of multicellular organismal metabolic process" NARROW [] synonym: "regulation of organismal metabolic process" NARROW [GOC:tb] -is_a: GO:0050789 ! regulation of biological process +is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008152 ! metabolic process -relationship: regulates GO:0008152 ! metabolic process +intersection_of: RO:0002211 GO:0008152 ! regulates (processual) metabolic process +relationship: RO:0002211 GO:0008152 ! regulates (processual) metabolic process [Term] id: GO:0019226 @@ -59015,8 +58842,8 @@ def: "An action potential that occurs in a neuron." [GOC:dph, GOC:isa_complete, synonym: "generation of action potential" RELATED [GOC:dph, GOC:tb] is_a: GO:0001508 ! action potential intersection_of: GO:0001508 ! action potential -intersection_of: occurs_in CL:0000540 ! neuron -relationship: occurs_in CL:0000540 ! neuron +intersection_of: BFO:0000066 CL:0000540 ! occurs in neuron +relationship: BFO:0000066 CL:0000540 ! occurs in neuron relationship: part_of GO:0019226 ! transmission of nerve impulse [Term] @@ -59058,10 +58885,10 @@ synonym: "tyrosine synthesis, by oxidation of phenylalanine" EXACT [] xref: MetaCyc:PWY-6134 is_a: GO:0006571 ! tyrosine biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_input CHEBI:28044 ! phenylalanine -intersection_of: has_primary_output CHEBI:58315 ! L-tyrosine zwitterion -relationship: has_primary_input CHEBI:28044 ! phenylalanine -relationship: has_primary_output CHEBI:58315 ! L-tyrosine zwitterion +intersection_of: RO:0004008 CHEBI:58315 ! has primary output L-tyrosine zwitterion +intersection_of: RO:0004009 CHEBI:28044 ! has primary input phenylalanine +relationship: RO:0004008 CHEBI:58315 ! has primary output L-tyrosine zwitterion +relationship: RO:0004009 CHEBI:28044 ! has primary input phenylalanine property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20583" xsd:anyURI [Term] @@ -59076,8 +58903,8 @@ synonym: "D-ribose synthesis" EXACT [] is_a: GO:0006014 ! D-ribose metabolic process is_a: GO:0019322 ! pentose biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:16988 ! D-ribose -relationship: has_primary_output CHEBI:16988 ! D-ribose +intersection_of: RO:0004008 CHEBI:16988 ! has primary output D-ribose +relationship: RO:0004008 CHEBI:16988 ! has primary output D-ribose [Term] id: GO:0019303 @@ -59091,8 +58918,8 @@ xref: MetaCyc:RIBOKIN-PWY is_a: GO:0006014 ! D-ribose metabolic process is_a: GO:0019323 ! pentose catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:16988 ! D-ribose -relationship: has_primary_input CHEBI:16988 ! D-ribose +intersection_of: RO:0004009 CHEBI:16988 ! has primary input D-ribose +relationship: RO:0004009 CHEBI:16988 ! has primary input D-ribose [Term] id: GO:0019318 @@ -59102,8 +58929,8 @@ def: "The chemical reactions and pathways involving a hexose, any monosaccharide synonym: "hexose metabolism" EXACT [] is_a: GO:0005996 ! monosaccharide metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:18133 ! hexose -relationship: has_primary_input_or_output CHEBI:18133 ! hexose +intersection_of: RO:0004007 CHEBI:18133 ! has primary input or output hexose +relationship: RO:0004007 CHEBI:18133 ! has primary input or output hexose [Term] id: GO:0019319 @@ -59117,8 +58944,8 @@ synonym: "hexose synthesis" EXACT [] is_a: GO:0019318 ! hexose metabolic process is_a: GO:0046364 ! monosaccharide biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:18133 ! hexose -relationship: has_primary_output CHEBI:18133 ! hexose +intersection_of: RO:0004008 CHEBI:18133 ! has primary output hexose +relationship: RO:0004008 CHEBI:18133 ! has primary output hexose [Term] id: GO:0019320 @@ -59131,8 +58958,8 @@ synonym: "hexose degradation" EXACT [] is_a: GO:0019318 ! hexose metabolic process is_a: GO:0046365 ! monosaccharide catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:18133 ! hexose -relationship: has_primary_input CHEBI:18133 ! hexose +intersection_of: RO:0004009 CHEBI:18133 ! has primary input hexose +relationship: RO:0004009 CHEBI:18133 ! has primary input hexose [Term] id: GO:0019321 @@ -59142,8 +58969,8 @@ def: "The chemical reactions and pathways involving a pentose, any monosaccharid synonym: "pentose metabolism" EXACT [] is_a: GO:0005996 ! monosaccharide metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:25901 ! pentose -relationship: has_primary_input_or_output CHEBI:25901 ! pentose +intersection_of: RO:0004007 CHEBI:25901 ! has primary input or output pentose +relationship: RO:0004007 CHEBI:25901 ! has primary input or output pentose [Term] id: GO:0019322 @@ -59157,8 +58984,8 @@ synonym: "pentose synthesis" EXACT [] is_a: GO:0019321 ! pentose metabolic process is_a: GO:0046364 ! monosaccharide biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:25901 ! pentose -relationship: has_primary_output CHEBI:25901 ! pentose +intersection_of: RO:0004008 CHEBI:25901 ! has primary output pentose +relationship: RO:0004008 CHEBI:25901 ! has primary output pentose [Term] id: GO:0019323 @@ -59171,8 +58998,8 @@ synonym: "pentose degradation" EXACT [] is_a: GO:0019321 ! pentose metabolic process is_a: GO:0046365 ! monosaccharide catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:25901 ! pentose -relationship: has_primary_input CHEBI:25901 ! pentose +intersection_of: RO:0004009 CHEBI:25901 ! has primary input pentose +relationship: RO:0004009 CHEBI:25901 ! has primary input pentose [Term] id: GO:0019336 @@ -59186,8 +59013,8 @@ xref: MetaCyc:PHENOLDEG-PWY is_a: GO:0018958 ! phenol-containing compound metabolic process is_a: GO:1901616 ! organic hydroxy compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:33853 ! phenols -relationship: has_primary_input CHEBI:33853 ! phenols +intersection_of: RO:0004009 CHEBI:33853 ! has primary input phenols +relationship: RO:0004009 CHEBI:33853 ! has primary input phenols [Term] id: GO:0019374 @@ -59197,8 +59024,8 @@ def: "The chemical reactions and pathways involving galactolipids, any glycolipi synonym: "galactolipid metabolism" EXACT [] is_a: GO:0006664 ! glycolipid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:5254 ! galactolipid -relationship: has_primary_input_or_output CHEBI:5254 ! galactolipid +intersection_of: RO:0004007 CHEBI:5254 ! has primary input or output galactolipid +relationship: RO:0004007 CHEBI:5254 ! has primary input or output galactolipid [Term] id: GO:0019375 @@ -59212,8 +59039,8 @@ synonym: "galactolipid synthesis" EXACT [] is_a: GO:0009247 ! glycolipid biosynthetic process is_a: GO:0019374 ! galactolipid metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:5254 ! galactolipid -relationship: has_primary_output CHEBI:5254 ! galactolipid +intersection_of: RO:0004008 CHEBI:5254 ! has primary output galactolipid +relationship: RO:0004008 CHEBI:5254 ! has primary output galactolipid [Term] id: GO:0019376 @@ -59226,8 +59053,8 @@ synonym: "galactolipid degradation" EXACT [] is_a: GO:0019374 ! galactolipid metabolic process is_a: GO:0019377 ! glycolipid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:5254 ! galactolipid -relationship: has_primary_input CHEBI:5254 ! galactolipid +intersection_of: RO:0004009 CHEBI:5254 ! has primary input galactolipid +relationship: RO:0004009 CHEBI:5254 ! has primary input galactolipid [Term] id: GO:0019377 @@ -59241,8 +59068,8 @@ is_a: GO:0006664 ! glycolipid metabolic process is_a: GO:0046466 ! membrane lipid catabolic process is_a: GO:1901136 ! carbohydrate derivative catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:33563 ! glycolipid -relationship: has_primary_input CHEBI:33563 ! glycolipid +intersection_of: RO:0004009 CHEBI:33563 ! has primary input glycolipid +relationship: RO:0004009 CHEBI:33563 ! has primary input glycolipid [Term] id: GO:0019413 @@ -59256,8 +59083,8 @@ synonym: "acetate synthesis" EXACT [] is_a: GO:0006083 ! acetate metabolic process is_a: GO:0072330 ! monocarboxylic acid biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:30089 ! acetate -relationship: has_primary_output CHEBI:30089 ! acetate +intersection_of: RO:0004008 CHEBI:30089 ! has primary output acetate +relationship: RO:0004008 CHEBI:30089 ! has primary output acetate [Term] id: GO:0019478 @@ -59270,8 +59097,8 @@ synonym: "D-amino acid degradation" EXACT [] is_a: GO:0009063 ! amino acid catabolic process is_a: GO:0046416 ! D-amino acid metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:59871 ! D-alpha-amino acid zwitterion -relationship: has_primary_input CHEBI:59871 ! D-alpha-amino acid zwitterion +intersection_of: RO:0004009 CHEBI:59871 ! has primary input D-alpha-amino acid zwitterion +relationship: RO:0004009 CHEBI:59871 ! has primary input D-alpha-amino acid zwitterion [Term] id: GO:0019538 @@ -59297,10 +59124,9 @@ synonym: "protein metabolism" EXACT [] synonym: "protein metabolism and modification" EXACT [] xref: Wikipedia:Protein_metabolism is_a: GO:0044238 ! primary metabolic process -is_a: GO:1901564 ! organonitrogen compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output PR:000000001 ! protein -relationship: has_primary_input_or_output PR:000000001 ! protein +intersection_of: RO:0004007 PR:000000001 ! has primary input or output protein +relationship: RO:0004007 PR:000000001 ! has primary input or output protein property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23112" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI @@ -59314,8 +59140,8 @@ synonym: "propanoate metabolism" EXACT [] synonym: "propionate metabolism" EXACT [] is_a: GO:0046459 ! short-chain fatty acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:17272 ! propionate -relationship: has_primary_input_or_output CHEBI:17272 ! propionate +intersection_of: RO:0004007 CHEBI:17272 ! has primary input or output propionate +relationship: RO:0004007 CHEBI:17272 ! has primary input or output propionate [Term] id: GO:0019542 @@ -59329,8 +59155,8 @@ synonym: "propionate synthesis" EXACT [] is_a: GO:0019541 ! propionate metabolic process is_a: GO:0051790 ! short-chain fatty acid biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:17272 ! propionate -relationship: has_primary_output CHEBI:17272 ! propionate +intersection_of: RO:0004008 CHEBI:17272 ! has primary output propionate +relationship: RO:0004008 CHEBI:17272 ! has primary output propionate [Term] id: GO:0019543 @@ -59343,8 +59169,8 @@ synonym: "propionate degradation" EXACT [] is_a: GO:0019541 ! propionate metabolic process is_a: GO:0019626 ! short-chain fatty acid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:17272 ! propionate -relationship: has_primary_input CHEBI:17272 ! propionate +intersection_of: RO:0004009 CHEBI:17272 ! has primary input propionate +relationship: RO:0004009 CHEBI:17272 ! has primary input propionate [Term] id: GO:0019605 @@ -59359,8 +59185,8 @@ synonym: "butyric acid metabolic process" EXACT [] synonym: "butyric acid metabolism" EXACT [] is_a: GO:0046459 ! short-chain fatty acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:17968 ! butyrate -relationship: has_primary_input_or_output CHEBI:17968 ! butyrate +intersection_of: RO:0004007 CHEBI:17968 ! has primary input or output butyrate +relationship: RO:0004007 CHEBI:17968 ! has primary input or output butyrate [Term] id: GO:0019614 @@ -59374,8 +59200,8 @@ synonym: "catechol degradation" RELATED [] is_a: GO:0009712 ! catechol-containing compound metabolic process is_a: GO:0019336 ! phenol-containing compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:33566 ! catechols -relationship: has_primary_input CHEBI:33566 ! catechols +intersection_of: RO:0004009 CHEBI:33566 ! has primary input catechols +relationship: RO:0004009 CHEBI:33566 ! has primary input catechols [Term] id: GO:0019626 @@ -59390,8 +59216,8 @@ xref: MetaCyc:ACETOACETATE-DEG-PWY is_a: GO:0009062 ! fatty acid catabolic process is_a: GO:0046459 ! short-chain fatty acid metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:58951 ! short-chain fatty acid anion -relationship: has_primary_input CHEBI:58951 ! short-chain fatty acid anion +intersection_of: RO:0004009 CHEBI:58951 ! has primary input short-chain fatty acid anion +relationship: RO:0004009 CHEBI:58951 ! has primary input short-chain fatty acid anion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26445" xsd:anyURI [Term] @@ -59403,8 +59229,8 @@ subset: goslim_pombe synonym: "organophosphate metabolism" EXACT [] is_a: GO:0006793 ! phosphorus metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:25710 ! organophosphorus compound -relationship: has_primary_input_or_output CHEBI:25710 ! organophosphorus compound +intersection_of: RO:0004007 CHEBI:25710 ! has primary input or output organophosphorus compound +relationship: RO:0004007 CHEBI:25710 ! has primary input or output organophosphorus compound property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26992" xsd:anyURI [Term] @@ -59417,14 +59243,15 @@ synonym: "anaerobic purine base catabolism" EXACT [] synonym: "anaerobic purine catabolic process" RELATED [] synonym: "purine base fermentation" EXACT [] synonym: "purine fermentation" RELATED [] -xref: MetaCyc:P164-PWY -xref: MetaCyc:PWY-5044 -xref: MetaCyc:PWY-5497 +xref: MetaCyc:P164-PWY {source="skos:narrowMatch"} +xref: MetaCyc:PWY-5044 {source="skos:narrowMatch"} +xref: MetaCyc:PWY-5497 {source="skos:narrowMatch"} is_a: GO:0006145 ! purine nucleobase catabolic process is_a: GO:0019666 ! nitrogenous compound fermentation intersection_of: GO:0006113 ! fermentation -intersection_of: has_primary_input CHEBI:35584 ! purine -relationship: has_primary_input CHEBI:35584 ! purine +intersection_of: RO:0004009 CHEBI:35584 ! has primary input purine +relationship: RO:0004009 CHEBI:35584 ! has primary input purine +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28527" xsd:anyURI [Term] id: GO:0019654 @@ -59435,9 +59262,9 @@ xref: MetaCyc:P142-PWY is_a: GO:0006083 ! acetate metabolic process is_a: GO:0006113 ! fermentation intersection_of: GO:0006113 ! fermentation -intersection_of: has_primary_input CHEBI:30089 ! acetate -relationship: has_primary_input CHEBI:30089 ! acetate +intersection_of: RO:0004009 CHEBI:30089 ! has primary input acetate relationship: never_in_taxon NCBITaxon:4895 ! Schizosaccharomyces +relationship: RO:0004009 CHEBI:30089 ! has primary input acetate [Term] id: GO:0019666 @@ -59447,8 +59274,8 @@ def: "The anaerobic chemical reactions and pathways resulting in the breakdown o synonym: "nitrogenous compound catabolic process" BROAD [] is_a: GO:0006113 ! fermentation intersection_of: GO:0006113 ! fermentation -intersection_of: has_primary_input CHEBI:51143 ! nitrogen molecular entity -relationship: has_primary_input CHEBI:51143 ! nitrogen molecular entity +intersection_of: RO:0004009 CHEBI:51143 ! has primary input nitrogen molecular entity +relationship: RO:0004009 CHEBI:51143 ! has primary input nitrogen molecular entity [Term] id: GO:0019693 @@ -59460,8 +59287,8 @@ is_a: GO:0006796 ! phosphate-containing compound metabolic process is_a: GO:0019637 ! organophosphate metabolic process is_a: GO:1901135 ! carbohydrate derivative metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26562 ! ribose phosphate -relationship: has_primary_input_or_output CHEBI:26562 ! ribose phosphate +intersection_of: RO:0004007 CHEBI:26562 ! has primary input or output ribose phosphate +relationship: RO:0004007 CHEBI:26562 ! has primary input or output ribose phosphate [Term] id: GO:0019695 @@ -59471,8 +59298,8 @@ def: "The chemical reactions and pathways involving choline (2-hydroxyethyltrime synonym: "choline metabolism" EXACT [] is_a: GO:0097164 ! ammonium ion metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:15354 ! choline -relationship: has_primary_input_or_output CHEBI:15354 ! choline +intersection_of: RO:0004007 CHEBI:15354 ! has primary input or output choline +relationship: RO:0004007 CHEBI:15354 ! has primary input or output choline [Term] id: GO:0019724 @@ -59488,8 +59315,8 @@ synonym: "B-lymphocyte mediated immunity" EXACT [] is_a: GO:0002449 ! lymphocyte mediated immunity is_a: GO:0002460 ! adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains intersection_of: GO:0002376 ! immune system process -intersection_of: process_has_causal_agent CL:0000236 ! B cell -relationship: process_has_causal_agent CL:0000236 ! B cell +intersection_of: RO:0002608 CL:0000236 ! process has causal agent B cell +relationship: RO:0002608 CL:0000236 ! process has causal agent B cell [Term] id: GO:0019725 @@ -59501,11 +59328,11 @@ subset: goslim_euk_cellular_processes_ribbon subset: goslim_plant is_a: GO:0042592 ! homeostatic process intersection_of: GO:0042592 ! homeostatic process -intersection_of: occurs_in CL:0000000 ! cell +intersection_of: BFO:0000066 CL:0000000 ! occurs in cell disjoint_from: GO:0048872 ! homeostasis of number of cells +relationship: BFO:0000066 CL:0000000 ! occurs in cell relationship: in_taxon NCBITaxon:131567 {all_only="true"} ! cellular organisms -relationship: occurs_in CL:0000000 ! cell -relationship: only_in_taxon NCBITaxon:131567 ! cellular organisms +relationship: RO:0002160 NCBITaxon:131567 ! only in taxon cellular organisms [Term] id: GO:0019730 @@ -59524,10 +59351,9 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving isoprenoids." [GOC:go_curators] synonym: "regulation of isoprenoid metabolism" EXACT [] is_a: GO:0019216 ! regulation of lipid metabolic process -is_a: GO:0031323 ! regulation of cellular metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006720 ! isoprenoid metabolic process -relationship: regulates GO:0006720 ! isoprenoid metabolic process +intersection_of: RO:0002211 GO:0006720 ! regulates (processual) isoprenoid metabolic process +relationship: RO:0002211 GO:0006720 ! regulates (processual) isoprenoid metabolic process [Term] id: GO:0019748 @@ -59554,8 +59380,8 @@ def: "The chemical reactions and pathways involving carboxylic acids, any organi synonym: "carboxylic acid metabolism" EXACT [] is_a: GO:0043436 ! oxoacid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:29067 ! carboxylic acid anion -relationship: has_primary_input_or_output CHEBI:29067 ! carboxylic acid anion +intersection_of: RO:0004007 CHEBI:29067 ! has primary input or output carboxylic acid anion +relationship: RO:0004007 CHEBI:29067 ! has primary input or output carboxylic acid anion [Term] id: GO:0019755 @@ -59565,8 +59391,8 @@ def: "The directed movement of one-carbon compounds into, out of or within a cel synonym: "one carbon compound transport" EXACT [] is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:64708 ! one-carbon compound -relationship: has_primary_input CHEBI:64708 ! one-carbon compound +intersection_of: RO:0004009 CHEBI:64708 ! has primary input one-carbon compound +relationship: RO:0004009 CHEBI:64708 ! has primary input one-carbon compound [Term] id: GO:0019814 @@ -59607,8 +59433,8 @@ synonym: "cytochrome P450" NARROW [] synonym: "cytochrome P450 activity" RELATED [] is_a: GO:0036094 ! small molecule binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:15379 ! dioxygen -relationship: has_primary_input CHEBI:15379 ! dioxygen +intersection_of: RO:0004009 CHEBI:15379 ! has primary input dioxygen +relationship: RO:0004009 CHEBI:15379 ! has primary input dioxygen [Term] id: GO:0019827 @@ -59619,8 +59445,8 @@ synonym: "maintenance of pluripotency" RELATED [GOC:vk] is_a: GO:0032501 ! multicellular organismal process is_a: GO:0098727 ! maintenance of cell number intersection_of: GO:0098727 ! maintenance of cell number -intersection_of: acts_on_population_of CL:0000034 ! stem cell -relationship: acts_on_population_of CL:0000034 ! stem cell +intersection_of: RO:0012003 CL:0000034 ! acts on population of stem cell +relationship: RO:0012003 CL:0000034 ! acts on population of stem cell [Term] id: GO:0019840 @@ -59630,8 +59456,8 @@ def: "Binding to an isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or co subset: goslim_pir is_a: GO:0008289 ! lipid binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:24913 ! isoprenoid -relationship: has_primary_input CHEBI:24913 ! isoprenoid +intersection_of: RO:0004009 CHEBI:24913 ! has primary input isoprenoid +relationship: RO:0004009 CHEBI:24913 ! has primary input isoprenoid [Term] id: GO:0019865 @@ -59640,8 +59466,8 @@ namespace: molecular_function def: "Binding to an immunoglobulin." [GOC:ma] is_a: GO:0044877 ! protein-containing complex binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input GO:0019814 ! immunoglobulin complex -relationship: has_primary_input GO:0019814 ! immunoglobulin complex +intersection_of: RO:0004009 GO:0019814 ! has primary input immunoglobulin complex +relationship: RO:0004009 GO:0019814 ! has primary input immunoglobulin complex [Term] id: GO:0019867 @@ -59690,9 +59516,9 @@ namespace: biological_process def: "The formation of the prechordal plate. The prechordal plate is a thickening of the endoderm at the cranial end of the primitive streak formed by the involution of Spemann's organizer cells. The prechordal plate and the notochord induce the formation of the neural plate from the overlying ectodermal cells." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003063 ! prechordal plate +intersection_of: RO:0002297 UBERON:0003063 ! results in formation of anatomical entity prechordal plate relationship: part_of GO:0007399 ! nervous system development -relationship: results_in_formation_of_anatomical_entity UBERON:0003063 ! prechordal plate +relationship: RO:0002297 UBERON:0003063 ! results in formation of anatomical entity prechordal plate [Term] id: GO:0021503 @@ -59711,9 +59537,9 @@ def: "The formation of the median and lateral hinge points in the neural folds. synonym: "neural fold furrowing" NARROW [GOC:cls] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005069 ! neural fold hinge point +intersection_of: RO:0002297 UBERON:0005069 ! results in formation of anatomical entity neural fold hinge point relationship: part_of GO:0021503 ! neural fold bending -relationship: results_in_formation_of_anatomical_entity UBERON:0005069 ! neural fold hinge point +relationship: RO:0002297 UBERON:0005069 ! results in formation of anatomical entity neural fold hinge point [Term] id: GO:0021506 @@ -59730,10 +59556,10 @@ namespace: biological_process def: "The formation of a ventral region of glial cells in the neural tube that provides inductive signals for the specification of neuronal cell types. The floor plate is evident at the ventral midline by the neural fold stage." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, PMID:11262869] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003079 ! floor plate +intersection_of: RO:0002297 UBERON:0003079 ! results in formation of anatomical entity floor plate relationship: part_of GO:0007418 ! ventral midline development relationship: part_of GO:0033505 ! floor plate morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0003079 ! floor plate +relationship: RO:0002297 UBERON:0003079 ! results in formation of anatomical entity floor plate [Term] id: GO:0021509 @@ -59742,9 +59568,9 @@ namespace: biological_process def: "The formation of a single row of glia at the dorsal midline of the developing neural tube. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, PMID:15936325] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003054 ! roof plate +intersection_of: RO:0002297 UBERON:0003054 ! results in formation of anatomical entity roof plate relationship: part_of GO:0001841 ! neural tube formation -relationship: results_in_formation_of_anatomical_entity UBERON:0003054 ! roof plate +relationship: RO:0002297 UBERON:0003054 ! results in formation of anatomical entity roof plate [Term] id: GO:0021510 @@ -59753,9 +59579,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the spinal cord over time, from its formation to the mature structure. The spinal cord primarily conducts sensory and motor nerve impulses between the brain and the peripheral nervous tissues." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002240 ! spinal cord +intersection_of: RO:0002296 UBERON:0002240 ! results in development of spinal cord relationship: part_of GO:0007417 ! central nervous system development -relationship: results_in_development_of UBERON:0002240 ! spinal cord +relationship: RO:0002296 UBERON:0002240 ! results in development of spinal cord [Term] id: GO:0021514 @@ -59765,11 +59591,11 @@ def: "The process in which neuroepithelial cells in the neural tube acquire spec is_a: GO:0021515 ! cell differentiation in spinal cord is_a: GO:0021953 ! central nervous system neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: occurs_in UBERON:0002240 ! spinal cord -intersection_of: results_in_acquisition_of_features_of CL:0000099 ! interneuron -relationship: occurs_in UBERON:0002240 ! spinal cord +intersection_of: BFO:0000066 UBERON:0002240 ! occurs in spinal cord +intersection_of: RO:0002315 CL:0000099 ! results in acquisition of features of interneuron +relationship: BFO:0000066 UBERON:0002240 ! occurs in spinal cord relationship: part_of GO:0021517 ! ventral spinal cord development -relationship: results_in_acquisition_of_features_of CL:0000099 ! interneuron +relationship: RO:0002315 CL:0000099 ! results in acquisition of features of interneuron [Term] id: GO:0021515 @@ -59778,8 +59604,8 @@ namespace: biological_process def: "The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the spinal cord. Differentiation includes the processes involved in commitment of a cell to a specific fate." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, PMID:11262869] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: occurs_in UBERON:0002240 ! spinal cord -relationship: occurs_in UBERON:0002240 ! spinal cord +intersection_of: BFO:0000066 UBERON:0002240 ! occurs in spinal cord +relationship: BFO:0000066 UBERON:0002240 ! occurs in spinal cord relationship: part_of GO:0021510 ! spinal cord development [Term] @@ -59789,9 +59615,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the dorsal region of the spinal cord over time, from its formation to the mature structure. The dorsal region of the mature spinal cord contains neurons that process and relay sensory input." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, PMID:11179871] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002256 ! dorsal horn of spinal cord +intersection_of: RO:0002296 UBERON:0002256 ! results in development of dorsal horn of spinal cord relationship: part_of GO:0021510 ! spinal cord development -relationship: results_in_development_of UBERON:0002256 ! dorsal horn of spinal cord +relationship: RO:0002296 UBERON:0002256 ! results in development of dorsal horn of spinal cord [Term] id: GO:0021517 @@ -59800,9 +59626,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the ventral region of the spinal cord over time, from its formation to the mature structure. The neurons of the ventral region of the mature spinal cord participate in motor output." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002257 ! ventral horn of spinal cord +intersection_of: RO:0002296 UBERON:0002257 ! results in development of ventral horn of spinal cord relationship: part_of GO:0021510 ! spinal cord development -relationship: results_in_development_of UBERON:0002257 ! ventral horn of spinal cord +relationship: RO:0002296 UBERON:0002257 ! results in development of ventral horn of spinal cord [Term] id: GO:0021522 @@ -59812,9 +59638,9 @@ def: "The process in which neuroepithelial cells in the ventral neural tube acqu is_a: GO:0021515 ! cell differentiation in spinal cord is_a: GO:0021953 ! central nervous system neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0011001 ! spinal cord motor neuron +intersection_of: RO:0002315 CL:0011001 ! results in acquisition of features of spinal cord motor neuron relationship: part_of GO:0021517 ! ventral spinal cord development -relationship: results_in_acquisition_of_features_of CL:0011001 ! spinal cord motor neuron +relationship: RO:0002315 CL:0011001 ! results in acquisition of features of spinal cord motor neuron [Term] id: GO:0021523 @@ -59823,8 +59649,8 @@ namespace: biological_process def: "The process in which neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of somatic motor neurons. Somatic motor neurons innervate skeletal muscle targets and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, PMID:11262869] is_a: GO:0021522 ! spinal cord motor neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0005024 ! somatomotor neuron -relationship: results_in_acquisition_of_features_of CL:0005024 ! somatomotor neuron +intersection_of: RO:0002315 CL:0005024 ! results in acquisition of features of somatomotor neuron +relationship: RO:0002315 CL:0005024 ! results in acquisition of features of somatomotor neuron [Term] id: GO:0021531 @@ -59835,8 +59661,8 @@ synonym: "radial glial cell differentiation in spinal cord" EXACT [] is_a: GO:0021515 ! cell differentiation in spinal cord is_a: GO:0060019 ! radial glial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000073 ! spinal cord radial glial cell -relationship: results_in_acquisition_of_features_of CL:1000073 ! spinal cord radial glial cell +intersection_of: RO:0002315 CL:1000073 ! results in acquisition of features of spinal cord radial glial cell +relationship: RO:0002315 CL:1000073 ! results in acquisition of features of spinal cord radial glial cell [Term] id: GO:0021532 @@ -59853,11 +59679,11 @@ namespace: biological_process def: "The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the mature cells of the hindbrain. Differentiation includes the processes involved in commitment of a cell to a specific fate." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: occurs_in UBERON:0002028 ! hindbrain +intersection_of: BFO:0000066 UBERON:0002028 ! occurs in hindbrain +relationship: BFO:0000066 UBERON:0002028 ! occurs in hindbrain relationship: in_taxon NCBITaxon:89593 {all_only="true"} ! Craniata -relationship: occurs_in UBERON:0002028 ! hindbrain -relationship: only_in_taxon NCBITaxon:89593 ! Craniata relationship: part_of GO:0030902 ! hindbrain development +relationship: RO:0002160 NCBITaxon:89593 ! only in taxon Craniata [Term] id: GO:0021534 @@ -59866,11 +59692,11 @@ namespace: biological_process def: "The multiplication or reproduction of cells, resulting in the expansion of a cell population in the hindbrain." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0061351 ! neural precursor cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: occurs_in UBERON:0002028 ! hindbrain +intersection_of: BFO:0000066 UBERON:0002028 ! occurs in hindbrain +relationship: BFO:0000066 UBERON:0002028 ! occurs in hindbrain relationship: in_taxon NCBITaxon:89593 {all_only="true"} ! Craniata -relationship: occurs_in UBERON:0002028 ! hindbrain -relationship: only_in_taxon NCBITaxon:89593 ! Craniata relationship: part_of GO:0030902 ! hindbrain development +relationship: RO:0002160 NCBITaxon:89593 ! only in taxon Craniata [Term] id: GO:0021535 @@ -59879,11 +59705,11 @@ namespace: biological_process def: "The orderly movement of a cell that will reside in the hindbrain." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0016477 ! cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: occurs_in UBERON:0002028 ! hindbrain +intersection_of: BFO:0000066 UBERON:0002028 ! occurs in hindbrain +relationship: BFO:0000066 UBERON:0002028 ! occurs in hindbrain relationship: in_taxon NCBITaxon:89593 {all_only="true"} ! Craniata -relationship: occurs_in UBERON:0002028 ! hindbrain -relationship: only_in_taxon NCBITaxon:89593 ! Craniata relationship: part_of GO:0030902 ! hindbrain development +relationship: RO:0002160 NCBITaxon:89593 ! only in taxon Craniata [Term] id: GO:0021536 @@ -59892,9 +59718,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the diencephalon over time, from its formation to the mature structure. The diencephalon is the paired caudal parts of the prosencephalon from which the thalamus, hypothalamus, epithalamus and subthalamus are derived; these regions regulate autonomic, visceral and endocrine function, and process information directed to the cerebral cortex." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001894 ! diencephalon +intersection_of: RO:0002296 UBERON:0001894 ! results in development of diencephalon relationship: part_of GO:0030900 ! forebrain development -relationship: results_in_development_of UBERON:0001894 ! diencephalon +relationship: RO:0002296 UBERON:0001894 ! results in development of diencephalon [Term] id: GO:0021537 @@ -59904,9 +59730,9 @@ def: "The process whose specific outcome is the progression of the telencephalon synonym: "cerebrum development" EXACT [GOC:sl, PMID:22331407] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001893 ! telencephalon +intersection_of: RO:0002296 UBERON:0001893 ! results in development of telencephalon relationship: part_of GO:0030900 ! forebrain development -relationship: results_in_development_of UBERON:0001893 ! telencephalon +relationship: RO:0002296 UBERON:0001893 ! results in development of telencephalon [Term] id: GO:0021538 @@ -59915,9 +59741,9 @@ namespace: biological_process def: "The progression of the epithalamus over time from its initial formation until its mature state. The epithalamus is the small dorsomedial area of the thalamus including the habenular nuclei and associated fiber bundles, the pineal body, and the epithelial roof of the third ventricle." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001899 ! epithalamus +intersection_of: RO:0002296 UBERON:0001899 ! results in development of epithalamus relationship: part_of GO:0021536 ! diencephalon development -relationship: results_in_development_of UBERON:0001899 ! epithalamus +relationship: RO:0002296 UBERON:0001899 ! results in development of epithalamus [Term] id: GO:0021539 @@ -59927,9 +59753,9 @@ def: "The process whose specific outcome is the progression of the subthalamus o synonym: "ventral thalamus development" RELATED [GOC:cls] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001900 ! ventral thalamus +intersection_of: RO:0002296 UBERON:0001900 ! results in development of ventral thalamus relationship: part_of GO:0021536 ! diencephalon development -relationship: results_in_development_of UBERON:0001900 ! ventral thalamus +relationship: RO:0002296 UBERON:0001900 ! results in development of ventral thalamus [Term] id: GO:0021540 @@ -59938,9 +59764,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the corpus callosum are generated and organized. The corpus callosum is a thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provides communications between the right and left cerebral hemispheres." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0021952 ! central nervous system projection neuron axonogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002336 ! corpus callosum +intersection_of: RO:0002298 UBERON:0002336 ! results in morphogenesis of corpus callosum relationship: part_of GO:0022038 ! corpus callosum development -relationship: results_in_morphogenesis_of UBERON:0002336 ! corpus callosum +relationship: RO:0002298 UBERON:0002336 ! results in morphogenesis of corpus callosum [Term] id: GO:0021541 @@ -59951,9 +59777,9 @@ synonym: "Ammon's horn development" RELATED [GOC:cls] synonym: "cornu ammonis development" RELATED [GOC:cls] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001954 ! Ammon's horn +intersection_of: RO:0002296 UBERON:0001954 ! results in development of Ammon's horn relationship: part_of GO:0021766 ! hippocampus development -relationship: results_in_development_of UBERON:0001954 ! Ammon's horn +relationship: RO:0002296 UBERON:0001954 ! results in development of Ammon's horn [Term] id: GO:0021542 @@ -59962,9 +59788,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the dentate gyrus over time, from its formation to the mature structure. The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001885 ! dentate gyrus of hippocampal formation +intersection_of: RO:0002296 UBERON:0001885 ! results in development of dentate gyrus of hippocampal formation relationship: part_of GO:0021766 ! hippocampus development -relationship: results_in_development_of UBERON:0001885 ! dentate gyrus of hippocampal formation +relationship: RO:0002296 UBERON:0001885 ! results in development of dentate gyrus of hippocampal formation [Term] id: GO:0021543 @@ -59973,9 +59799,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the pallium over time, from its formation to the mature structure. The pallium is the roof region of the telencephalon." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, PMID:12626695] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000203 ! pallium +intersection_of: RO:0002296 UBERON:0000203 ! results in development of pallium relationship: part_of GO:0021537 ! telencephalon development -relationship: results_in_development_of UBERON:0000203 ! pallium +relationship: RO:0002296 UBERON:0000203 ! results in development of pallium [Term] id: GO:0021544 @@ -59984,9 +59810,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the subpallium over time, from its formation to the mature structure. The subpallium is the base region of the telencephalon." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, PMID:12626695] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000204 ! ventral part of telencephalon +intersection_of: RO:0002296 UBERON:0000204 ! results in development of ventral part of telencephalon relationship: part_of GO:0021537 ! telencephalon development -relationship: results_in_development_of UBERON:0000204 ! ventral part of telencephalon +relationship: RO:0002296 UBERON:0000204 ! results in development of ventral part of telencephalon [Term] id: GO:0021545 @@ -59995,8 +59821,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the cranial nerves over time, from its formation to the mature structure. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0021675 ! nerve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001785 ! cranial nerve -relationship: results_in_development_of UBERON:0001785 ! cranial nerve +intersection_of: RO:0002296 UBERON:0001785 ! results in development of cranial nerve +relationship: RO:0002296 UBERON:0001785 ! results in development of cranial nerve [Term] id: GO:0021546 @@ -60005,9 +59831,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the rhombomere over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001892 ! rhombomere +intersection_of: RO:0002296 UBERON:0001892 ! results in development of rhombomere relationship: part_of GO:0030902 ! hindbrain development -relationship: results_in_development_of UBERON:0001892 ! rhombomere +relationship: RO:0002296 UBERON:0001892 ! results in development of rhombomere [Term] id: GO:0021547 @@ -60023,10 +59849,10 @@ synonym: "midbrain-hindbrain boundary formation" EXACT [GOC:cls] is_a: GO:0003002 ! regionalization is_a: GO:0048859 ! formation of anatomical boundary intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003052 ! midbrain-hindbrain boundary +intersection_of: RO:0002297 UBERON:0003052 ! results in formation of anatomical entity midbrain-hindbrain boundary relationship: part_of GO:0021999 ! neural plate anterior/posterior regionalization relationship: part_of GO:0030917 ! midbrain-hindbrain boundary development -relationship: results_in_formation_of_anatomical_entity UBERON:0003052 ! midbrain-hindbrain boundary +relationship: RO:0002297 UBERON:0003052 ! results in formation of anatomical entity midbrain-hindbrain boundary [Term] id: GO:0021548 @@ -60035,9 +59861,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the pons over time, from its formation to the mature structure. The pons lies above the medulla and next to the cerebellum. The pons conveys information about movement from the cerebral hemisphere to the cerebellum." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000988 ! pons +intersection_of: RO:0002296 UBERON:0000988 ! results in development of pons relationship: part_of GO:0022037 ! metencephalon development -relationship: results_in_development_of UBERON:0000988 ! pons +relationship: RO:0002296 UBERON:0000988 ! results in development of pons [Term] id: GO:0021549 @@ -60046,9 +59872,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002037 ! cerebellum +intersection_of: RO:0002296 UBERON:0002037 ! results in development of cerebellum relationship: part_of GO:0022037 ! metencephalon development -relationship: results_in_development_of UBERON:0002037 ! cerebellum +relationship: RO:0002296 UBERON:0002037 ! results in development of cerebellum [Term] id: GO:0021550 @@ -60059,9 +59885,9 @@ synonym: "medulla development" RELATED [GOC:cls] synonym: "myelencephalon development" RELATED [GOC:cls] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001896 ! medulla oblongata +intersection_of: RO:0002296 UBERON:0001896 ! results in development of medulla oblongata relationship: part_of GO:0030902 ! hindbrain development -relationship: results_in_development_of UBERON:0001896 ! medulla oblongata +relationship: RO:0002296 UBERON:0001896 ! results in development of medulla oblongata [Term] id: GO:0021551 @@ -60070,9 +59896,9 @@ namespace: biological_process def: "The process in which the anatomical structure of the central nervous system is generated and organized. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0582227089] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001017 ! central nervous system +intersection_of: RO:0002298 UBERON:0001017 ! results in morphogenesis of central nervous system relationship: part_of GO:0007417 ! central nervous system development -relationship: results_in_morphogenesis_of UBERON:0001017 ! central nervous system +relationship: RO:0002298 UBERON:0001017 ! results in morphogenesis of central nervous system [Term] id: GO:0021553 @@ -60084,8 +59910,8 @@ synonym: "cranial nerve 1 development" EXACT [GOC:cls] synonym: "cranial nerve I development" EXACT [GOC:cls] is_a: GO:0021545 ! cranial nerve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001579 ! olfactory nerve -relationship: results_in_development_of UBERON:0001579 ! olfactory nerve +intersection_of: RO:0002296 UBERON:0001579 ! results in development of olfactory nerve +relationship: RO:0002296 UBERON:0001579 ! results in development of olfactory nerve [Term] id: GO:0021554 @@ -60097,8 +59923,8 @@ synonym: "cranial nerve 2 development" EXACT [GOC:cls] synonym: "cranial nerve II development" EXACT [GOC:cls] is_a: GO:0021545 ! cranial nerve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000941 ! cranial nerve II -relationship: results_in_development_of UBERON:0000941 ! cranial nerve II +intersection_of: RO:0002296 UBERON:0000941 ! results in development of cranial nerve II +relationship: RO:0002296 UBERON:0000941 ! results in development of cranial nerve II [Term] id: GO:0021555 @@ -60109,9 +59935,9 @@ synonym: "isthmus morphogenesis" EXACT [GOC:cls] synonym: "MHB morphogenesis" EXACT [GOC:cls] is_a: GO:0048598 ! embryonic morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003052 ! midbrain-hindbrain boundary +intersection_of: RO:0002298 UBERON:0003052 ! results in morphogenesis of midbrain-hindbrain boundary relationship: part_of GO:0030917 ! midbrain-hindbrain boundary development -relationship: results_in_morphogenesis_of UBERON:0003052 ! midbrain-hindbrain boundary +relationship: RO:0002298 UBERON:0003052 ! results in morphogenesis of midbrain-hindbrain boundary [Term] id: GO:0021556 @@ -60120,9 +59946,9 @@ namespace: biological_process def: "The process that gives rise to the central nervous system. This process pertains to the initial formation of a structure from unspecified parts. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0582227089] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001017 ! central nervous system +intersection_of: RO:0002297 UBERON:0001017 ! results in formation of anatomical entity central nervous system relationship: part_of GO:0021551 ! central nervous system morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001017 ! central nervous system +relationship: RO:0002297 UBERON:0001017 ! results in formation of anatomical entity central nervous system [Term] id: GO:0021557 @@ -60134,9 +59960,9 @@ synonym: "cranial nerve 3 development" EXACT [GOC:cls] synonym: "cranial nerve III development" EXACT [GOC:cls] is_a: GO:0021545 ! cranial nerve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001643 ! oculomotor nerve +intersection_of: RO:0002296 UBERON:0001643 ! results in development of oculomotor nerve relationship: part_of GO:0021783 ! preganglionic parasympathetic fiber development -relationship: results_in_development_of UBERON:0001643 ! oculomotor nerve +relationship: RO:0002296 UBERON:0001643 ! results in development of oculomotor nerve [Term] id: GO:0021558 @@ -60148,8 +59974,8 @@ synonym: "cranial nerve 4 development" EXACT [GOC:cls] synonym: "cranial nerve IV development" EXACT [GOC:cls] is_a: GO:0021545 ! cranial nerve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001644 ! trochlear nerve -relationship: results_in_development_of UBERON:0001644 ! trochlear nerve +intersection_of: RO:0002296 UBERON:0001644 ! results in development of trochlear nerve +relationship: RO:0002296 UBERON:0001644 ! results in development of trochlear nerve [Term] id: GO:0021559 @@ -60161,8 +59987,8 @@ synonym: "cranial nerve 5 development" EXACT [GOC:cls] synonym: "cranial nerve V development" EXACT [GOC:cls] is_a: GO:0021545 ! cranial nerve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001645 ! trigeminal nerve -relationship: results_in_development_of UBERON:0001645 ! trigeminal nerve +intersection_of: RO:0002296 UBERON:0001645 ! results in development of trigeminal nerve +relationship: RO:0002296 UBERON:0001645 ! results in development of trigeminal nerve [Term] id: GO:0021560 @@ -60174,8 +60000,8 @@ synonym: "cranial nerve 6 development" EXACT [GOC:cls] synonym: "cranial nerve VI development" EXACT [GOC:cls] is_a: GO:0021545 ! cranial nerve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001646 ! abducens nerve -relationship: results_in_development_of UBERON:0001646 ! abducens nerve +intersection_of: RO:0002296 UBERON:0001646 ! results in development of abducens nerve +relationship: RO:0002296 UBERON:0001646 ! results in development of abducens nerve [Term] id: GO:0021561 @@ -60187,9 +60013,9 @@ synonym: "cranial nerve 7 development" EXACT [GOC:cls] synonym: "cranial nerve VII development" EXACT [GOC:cls] is_a: GO:0021545 ! cranial nerve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001647 ! facial nerve +intersection_of: RO:0002296 UBERON:0001647 ! results in development of facial nerve relationship: part_of GO:0021783 ! preganglionic parasympathetic fiber development -relationship: results_in_development_of UBERON:0001647 ! facial nerve +relationship: RO:0002296 UBERON:0001647 ! results in development of facial nerve [Term] id: GO:0021562 @@ -60202,8 +60028,8 @@ synonym: "cranial nerve 8 development" EXACT [GOC:cls] synonym: "cranial nerve VIII development" EXACT [GOC:cls] is_a: GO:0021545 ! cranial nerve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001648 ! vestibulocochlear nerve -relationship: results_in_development_of UBERON:0001648 ! vestibulocochlear nerve +intersection_of: RO:0002296 UBERON:0001648 ! results in development of vestibulocochlear nerve +relationship: RO:0002296 UBERON:0001648 ! results in development of vestibulocochlear nerve [Term] id: GO:0021563 @@ -60215,8 +60041,8 @@ synonym: "cranial nerve 9 development" EXACT [GOC:cls] synonym: "cranial nerve IX development" EXACT [GOC:cls] is_a: GO:0021545 ! cranial nerve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001649 ! glossopharyngeal nerve -relationship: results_in_development_of UBERON:0001649 ! glossopharyngeal nerve +intersection_of: RO:0002296 UBERON:0001649 ! results in development of glossopharyngeal nerve +relationship: RO:0002296 UBERON:0001649 ! results in development of glossopharyngeal nerve [Term] id: GO:0021564 @@ -60228,9 +60054,9 @@ synonym: "cranial nerve 10 development" RELATED [GOC:cls] synonym: "cranial nerve X development" EXACT [GOC:cls] is_a: GO:0021545 ! cranial nerve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001759 ! vagus nerve +intersection_of: RO:0002296 UBERON:0001759 ! results in development of vagus nerve relationship: part_of GO:0021783 ! preganglionic parasympathetic fiber development -relationship: results_in_development_of UBERON:0001759 ! vagus nerve +relationship: RO:0002296 UBERON:0001759 ! results in development of vagus nerve [Term] id: GO:0021565 @@ -60243,8 +60069,8 @@ synonym: "cranial nerve XI development" EXACT [GOC:cls] synonym: "spinal accessory nerve development" EXACT [PMID:11533729] is_a: GO:0021545 ! cranial nerve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002019 ! accessory XI nerve -relationship: results_in_development_of UBERON:0002019 ! accessory XI nerve +intersection_of: RO:0002296 UBERON:0002019 ! results in development of accessory XI nerve +relationship: RO:0002296 UBERON:0002019 ! results in development of accessory XI nerve [Term] id: GO:0021566 @@ -60256,8 +60082,8 @@ synonym: "cranial nerve 12 development" RELATED [GOC:cls] synonym: "cranial nerve XII development" EXACT [GOC:cls] is_a: GO:0021545 ! cranial nerve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001650 ! hypoglossal nerve -relationship: results_in_development_of UBERON:0001650 ! hypoglossal nerve +intersection_of: RO:0002296 UBERON:0001650 ! results in development of hypoglossal nerve +relationship: RO:0002296 UBERON:0001650 ! results in development of hypoglossal nerve [Term] id: GO:0021567 @@ -60266,8 +60092,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of rhombomere 1 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021546 ! rhombomere development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005499 ! rhombomere 1 -relationship: results_in_development_of UBERON:0005499 ! rhombomere 1 +intersection_of: RO:0002296 UBERON:0005499 ! results in development of rhombomere 1 +relationship: RO:0002296 UBERON:0005499 ! results in development of rhombomere 1 [Term] id: GO:0021568 @@ -60276,8 +60102,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of rhombomere 2 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021546 ! rhombomere development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005569 ! rhombomere 2 -relationship: results_in_development_of UBERON:0005569 ! rhombomere 2 +intersection_of: RO:0002296 UBERON:0005569 ! results in development of rhombomere 2 +relationship: RO:0002296 UBERON:0005569 ! results in development of rhombomere 2 [Term] id: GO:0021569 @@ -60286,8 +60112,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of rhombomere 3 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021546 ! rhombomere development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005507 ! rhombomere 3 -relationship: results_in_development_of UBERON:0005507 ! rhombomere 3 +intersection_of: RO:0002296 UBERON:0005507 ! results in development of rhombomere 3 +relationship: RO:0002296 UBERON:0005507 ! results in development of rhombomere 3 [Term] id: GO:0021570 @@ -60296,8 +60122,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of rhombomere 4 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021546 ! rhombomere development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005511 ! rhombomere 4 -relationship: results_in_development_of UBERON:0005511 ! rhombomere 4 +intersection_of: RO:0002296 UBERON:0005511 ! results in development of rhombomere 4 +relationship: RO:0002296 UBERON:0005511 ! results in development of rhombomere 4 [Term] id: GO:0021571 @@ -60306,8 +60132,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of rhombomere 5 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021546 ! rhombomere development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005515 ! rhombomere 5 -relationship: results_in_development_of UBERON:0005515 ! rhombomere 5 +intersection_of: RO:0002296 UBERON:0005515 ! results in development of rhombomere 5 +relationship: RO:0002296 UBERON:0005515 ! results in development of rhombomere 5 [Term] id: GO:0021572 @@ -60316,8 +60142,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of rhombomere 6 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021546 ! rhombomere development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005519 ! rhombomere 6 -relationship: results_in_development_of UBERON:0005519 ! rhombomere 6 +intersection_of: RO:0002296 UBERON:0005519 ! results in development of rhombomere 6 +relationship: RO:0002296 UBERON:0005519 ! results in development of rhombomere 6 [Term] id: GO:0021573 @@ -60326,8 +60152,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of rhombomere 7 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021546 ! rhombomere development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005523 ! rhombomere 7 -relationship: results_in_development_of UBERON:0005523 ! rhombomere 7 +intersection_of: RO:0002296 UBERON:0005523 ! results in development of rhombomere 7 +relationship: RO:0002296 UBERON:0005523 ! results in development of rhombomere 7 [Term] id: GO:0021574 @@ -60336,8 +60162,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of rhombomere 8 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021546 ! rhombomere development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005527 ! rhombomere 8 -relationship: results_in_development_of UBERON:0005527 ! rhombomere 8 +intersection_of: RO:0002296 UBERON:0005527 ! results in development of rhombomere 8 +relationship: RO:0002296 UBERON:0005527 ! results in development of rhombomere 8 [Term] id: GO:0021575 @@ -60347,9 +60173,9 @@ def: "The process in which the anatomical structure of the hindbrain is generate synonym: "rhombencephalon morphogenesis" RELATED [] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002028 ! hindbrain +intersection_of: RO:0002298 UBERON:0002028 ! results in morphogenesis of hindbrain relationship: part_of GO:0030902 ! hindbrain development -relationship: results_in_morphogenesis_of UBERON:0002028 ! hindbrain +relationship: RO:0002298 UBERON:0002028 ! results in morphogenesis of hindbrain [Term] id: GO:0021576 @@ -60358,9 +60184,9 @@ namespace: biological_process def: "The process that gives rise to the hindbrain. This process pertains to the initial formation of a structure from unspecified parts. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002028 ! hindbrain +intersection_of: RO:0002297 UBERON:0002028 ! results in formation of anatomical entity hindbrain relationship: part_of GO:0021575 ! hindbrain morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002028 ! hindbrain +relationship: RO:0002297 UBERON:0002028 ! results in formation of anatomical entity hindbrain [Term] id: GO:0021578 @@ -60369,10 +60195,10 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for the hindbrain to attain its fully functional state. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0002028 ! hindbrain +intersection_of: RO:0002299 UBERON:0002028 ! results in maturation of hindbrain relationship: part_of GO:0021626 ! central nervous system maturation relationship: part_of GO:0030902 ! hindbrain development -relationship: results_in_maturation_of UBERON:0002028 ! hindbrain +relationship: RO:0002299 UBERON:0002028 ! results in maturation of hindbrain [Term] id: GO:0021579 @@ -60383,10 +60209,10 @@ synonym: "medulla morphogenesis" RELATED [] synonym: "myelencephalon morphogenesis" RELATED [] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001896 ! medulla oblongata +intersection_of: RO:0002298 UBERON:0001896 ! results in morphogenesis of medulla oblongata relationship: part_of GO:0021550 ! medulla oblongata development relationship: part_of GO:0021575 ! hindbrain morphogenesis -relationship: results_in_morphogenesis_of UBERON:0001896 ! medulla oblongata +relationship: RO:0002298 UBERON:0001896 ! results in morphogenesis of medulla oblongata [Term] id: GO:0021580 @@ -60399,10 +60225,10 @@ synonym: "myelencephalon biosynthesis" RELATED [] synonym: "myelencephalon formation" RELATED [] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001896 ! medulla oblongata +intersection_of: RO:0002297 UBERON:0001896 ! results in formation of anatomical entity medulla oblongata relationship: part_of GO:0021576 ! hindbrain formation relationship: part_of GO:0021579 ! medulla oblongata morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001896 ! medulla oblongata +relationship: RO:0002297 UBERON:0001896 ! results in formation of anatomical entity medulla oblongata [Term] id: GO:0021582 @@ -60413,10 +60239,10 @@ synonym: "medulla maturation" RELATED [] synonym: "myelencephalon maturation" RELATED [] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0001896 ! medulla oblongata +intersection_of: RO:0002299 UBERON:0001896 ! results in maturation of medulla oblongata relationship: part_of GO:0021550 ! medulla oblongata development relationship: part_of GO:0021578 ! hindbrain maturation -relationship: results_in_maturation_of UBERON:0001896 ! medulla oblongata +relationship: RO:0002299 UBERON:0001896 ! results in maturation of medulla oblongata [Term] id: GO:0021583 @@ -60425,10 +60251,10 @@ namespace: biological_process def: "The process in which the anatomical structure of the pons is generated and organized. The pons lies above the medulla and next to the cerebellum. The pons conveys information about movement from the cerebral hemisphere to the cerebellum." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000988 ! pons +intersection_of: RO:0002298 UBERON:0000988 ! results in morphogenesis of pons relationship: part_of GO:0021548 ! pons development relationship: part_of GO:0021575 ! hindbrain morphogenesis -relationship: results_in_morphogenesis_of UBERON:0000988 ! pons +relationship: RO:0002298 UBERON:0000988 ! results in morphogenesis of pons [Term] id: GO:0021584 @@ -60437,10 +60263,10 @@ namespace: biological_process def: "The process that gives rise to the pons. This process pertains to the initial formation of a structure from unspecified parts. The pons lies above the medulla and next to the cerebellum. The pons conveys information about movement from the cerebral hemisphere to the cerebellum." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000988 ! pons +intersection_of: RO:0002297 UBERON:0000988 ! results in formation of anatomical entity pons relationship: part_of GO:0021576 ! hindbrain formation relationship: part_of GO:0021583 ! pons morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0000988 ! pons +relationship: RO:0002297 UBERON:0000988 ! results in formation of anatomical entity pons [Term] id: GO:0021586 @@ -60449,10 +60275,10 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for the pons to attain its fully functional state. The pons lies above the medulla and next to the cerebellum. The pons conveys information about movement from the cerebral hemisphere to the cerebellum." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0000988 ! pons +intersection_of: RO:0002299 UBERON:0000988 ! results in maturation of pons relationship: part_of GO:0021548 ! pons development relationship: part_of GO:0021578 ! hindbrain maturation -relationship: results_in_maturation_of UBERON:0000988 ! pons +relationship: RO:0002299 UBERON:0000988 ! results in maturation of pons [Term] id: GO:0021587 @@ -60461,10 +60287,10 @@ namespace: biological_process def: "The process in which the anatomical structure of the cerebellum is generated and organized. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. The cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002037 ! cerebellum +intersection_of: RO:0002298 UBERON:0002037 ! results in morphogenesis of cerebellum relationship: part_of GO:0021549 ! cerebellum development relationship: part_of GO:0021575 ! hindbrain morphogenesis -relationship: results_in_morphogenesis_of UBERON:0002037 ! cerebellum +relationship: RO:0002298 UBERON:0002037 ! results in morphogenesis of cerebellum [Term] id: GO:0021588 @@ -60473,10 +60299,10 @@ namespace: biological_process def: "The process that gives rise to the cerebellum. This process pertains to the initial formation of a structure from unspecified parts. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. The cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002037 ! cerebellum +intersection_of: RO:0002297 UBERON:0002037 ! results in formation of anatomical entity cerebellum relationship: part_of GO:0021576 ! hindbrain formation relationship: part_of GO:0021587 ! cerebellum morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002037 ! cerebellum +relationship: RO:0002297 UBERON:0002037 ! results in formation of anatomical entity cerebellum [Term] id: GO:0021590 @@ -60485,10 +60311,10 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for the cerebellum to attain its fully functional state. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. The cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0002037 ! cerebellum +intersection_of: RO:0002299 UBERON:0002037 ! results in maturation of cerebellum relationship: part_of GO:0021549 ! cerebellum development relationship: part_of GO:0021578 ! hindbrain maturation -relationship: results_in_maturation_of UBERON:0002037 ! cerebellum +relationship: RO:0002299 UBERON:0002037 ! results in maturation of cerebellum [Term] id: GO:0021591 @@ -60497,9 +60323,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the brain ventricular system over time, from its formation to the mature structure. The brain ventricular system consists of four communicating cavities within the brain that are continuous with the central canal of the spinal cord. These cavities include two lateral ventricles, the third ventricle and the fourth ventricle. Cerebrospinal fluid fills the ventricles and is produced by the choroid plexus." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005281 ! ventricular system of central nervous system +intersection_of: RO:0002296 UBERON:0005281 ! results in development of ventricular system of central nervous system relationship: part_of GO:0007420 ! brain development -relationship: results_in_development_of UBERON:0005281 ! ventricular system of central nervous system +relationship: RO:0002296 UBERON:0005281 ! results in development of ventricular system of central nervous system [Term] id: GO:0021592 @@ -60508,10 +60334,10 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the fourth ventricle over time, from its formation to the mature structure. The fourth ventricle is an irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002422 ! fourth ventricle +intersection_of: RO:0002296 UBERON:0002422 ! results in development of fourth ventricle relationship: part_of GO:0021591 ! ventricular system development relationship: part_of GO:0030902 ! hindbrain development -relationship: results_in_development_of UBERON:0002422 ! fourth ventricle +relationship: RO:0002296 UBERON:0002422 ! results in development of fourth ventricle [Term] id: GO:0021593 @@ -60520,9 +60346,9 @@ namespace: biological_process def: "The process in which the anatomical structure of the rhombomere is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001892 ! rhombomere +intersection_of: RO:0002298 UBERON:0001892 ! results in morphogenesis of rhombomere relationship: part_of GO:0021546 ! rhombomere development -relationship: results_in_morphogenesis_of UBERON:0001892 ! rhombomere +relationship: RO:0002298 UBERON:0001892 ! results in morphogenesis of rhombomere [Term] id: GO:0021594 @@ -60531,9 +60357,9 @@ namespace: biological_process def: "The process that gives rise to the rhombomere. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001892 ! rhombomere +intersection_of: RO:0002297 UBERON:0001892 ! results in formation of anatomical entity rhombomere relationship: part_of GO:0021593 ! rhombomere morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001892 ! rhombomere +relationship: RO:0002297 UBERON:0001892 ! results in formation of anatomical entity rhombomere [Term] id: GO:0021598 @@ -60543,9 +60369,9 @@ def: "The process in which the anatomical structure of the abducens nerve is gen synonym: "CN VI development" RELATED [] is_a: GO:0021602 ! cranial nerve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001646 ! abducens nerve +intersection_of: RO:0002298 UBERON:0001646 ! results in morphogenesis of abducens nerve relationship: part_of GO:0021560 ! abducens nerve development -relationship: results_in_morphogenesis_of UBERON:0001646 ! abducens nerve +relationship: RO:0002298 UBERON:0001646 ! results in morphogenesis of abducens nerve [Term] id: GO:0021599 @@ -60556,9 +60382,9 @@ synonym: "CN VI biosynthesis" RELATED [] synonym: "CN VI formation" RELATED [] is_a: GO:0021603 ! cranial nerve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001646 ! abducens nerve +intersection_of: RO:0002297 UBERON:0001646 ! results in formation of anatomical entity abducens nerve relationship: part_of GO:0021598 ! abducens nerve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001646 ! abducens nerve +relationship: RO:0002297 UBERON:0001646 ! results in formation of anatomical entity abducens nerve [Term] id: GO:0021601 @@ -60568,9 +60394,9 @@ def: "A developmental process, independent of morphogenetic (shape) change, that synonym: "CN VI maturation" RELATED [] is_a: GO:0021605 ! cranial nerve maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0001646 ! abducens nerve +intersection_of: RO:0002299 UBERON:0001646 ! results in maturation of abducens nerve relationship: part_of GO:0021560 ! abducens nerve development -relationship: results_in_maturation_of UBERON:0001646 ! abducens nerve +relationship: RO:0002299 UBERON:0001646 ! results in maturation of abducens nerve [Term] id: GO:0021602 @@ -60579,9 +60405,9 @@ namespace: biological_process def: "The process in which the anatomical structure of the cranial nerves are generated and organized. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001785 ! cranial nerve +intersection_of: RO:0002298 UBERON:0001785 ! results in morphogenesis of cranial nerve relationship: part_of GO:0021545 ! cranial nerve development -relationship: results_in_morphogenesis_of UBERON:0001785 ! cranial nerve +relationship: RO:0002298 UBERON:0001785 ! results in morphogenesis of cranial nerve [Term] id: GO:0021603 @@ -60590,9 +60416,9 @@ namespace: biological_process def: "The process that gives rise to the cranial nerves. This process pertains to the initial formation of a structure from unspecified parts. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001785 ! cranial nerve +intersection_of: RO:0002297 UBERON:0001785 ! results in formation of anatomical entity cranial nerve relationship: part_of GO:0021602 ! cranial nerve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001785 ! cranial nerve +relationship: RO:0002297 UBERON:0001785 ! results in formation of anatomical entity cranial nerve [Term] id: GO:0021605 @@ -60601,9 +60427,9 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for a cranial nerve to attain its fully functional state. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0021682 ! nerve maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0001785 ! cranial nerve +intersection_of: RO:0002299 UBERON:0001785 ! results in maturation of cranial nerve relationship: part_of GO:0021545 ! cranial nerve development -relationship: results_in_maturation_of UBERON:0001785 ! cranial nerve +relationship: RO:0002299 UBERON:0001785 ! results in maturation of cranial nerve [Term] id: GO:0021606 @@ -60614,9 +60440,9 @@ synonym: "CN XI maturation" RELATED [] synonym: "spinal accessory nerve maturation" RELATED [] is_a: GO:0021605 ! cranial nerve maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0002019 ! accessory XI nerve +intersection_of: RO:0002299 UBERON:0002019 ! results in maturation of accessory XI nerve relationship: part_of GO:0021565 ! accessory nerve development -relationship: results_in_maturation_of UBERON:0002019 ! accessory XI nerve +relationship: RO:0002299 UBERON:0002019 ! results in maturation of accessory XI nerve [Term] id: GO:0021607 @@ -60626,9 +60452,9 @@ def: "The process in which the anatomical structure of the accessory nerve is ge synonym: "CN XI morphogenesis" RELATED [] is_a: GO:0021602 ! cranial nerve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002019 ! accessory XI nerve +intersection_of: RO:0002298 UBERON:0002019 ! results in morphogenesis of accessory XI nerve relationship: part_of GO:0021565 ! accessory nerve development -relationship: results_in_morphogenesis_of UBERON:0002019 ! accessory XI nerve +relationship: RO:0002298 UBERON:0002019 ! results in morphogenesis of accessory XI nerve [Term] id: GO:0021608 @@ -60639,9 +60465,9 @@ synonym: "CN XI biosynthesis" RELATED [] synonym: "CN XI formation" RELATED [] is_a: GO:0021603 ! cranial nerve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002019 ! accessory XI nerve +intersection_of: RO:0002297 UBERON:0002019 ! results in formation of anatomical entity accessory XI nerve relationship: part_of GO:0021607 ! accessory nerve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002019 ! accessory XI nerve +relationship: RO:0002297 UBERON:0002019 ! results in formation of anatomical entity accessory XI nerve [Term] id: GO:0021610 @@ -60651,9 +60477,9 @@ def: "The process in which the anatomical structure of the facial nerve is gener synonym: "CN VII morphogenesis" RELATED [] is_a: GO:0021602 ! cranial nerve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001647 ! facial nerve +intersection_of: RO:0002298 UBERON:0001647 ! results in morphogenesis of facial nerve relationship: part_of GO:0021561 ! facial nerve development -relationship: results_in_morphogenesis_of UBERON:0001647 ! facial nerve +relationship: RO:0002298 UBERON:0001647 ! results in morphogenesis of facial nerve [Term] id: GO:0021611 @@ -60664,9 +60490,9 @@ synonym: "CN VII biosynthesis" RELATED [] synonym: "CN VII formation" RELATED [] is_a: GO:0021603 ! cranial nerve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001647 ! facial nerve +intersection_of: RO:0002297 UBERON:0001647 ! results in formation of anatomical entity facial nerve relationship: part_of GO:0021610 ! facial nerve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001647 ! facial nerve +relationship: RO:0002297 UBERON:0001647 ! results in formation of anatomical entity facial nerve [Term] id: GO:0021613 @@ -60676,9 +60502,9 @@ def: "A developmental process, independent of morphogenetic (shape) change, that synonym: "CN VII maturation" RELATED [] is_a: GO:0021605 ! cranial nerve maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0001647 ! facial nerve +intersection_of: RO:0002299 UBERON:0001647 ! results in maturation of facial nerve relationship: part_of GO:0021561 ! facial nerve development -relationship: results_in_maturation_of UBERON:0001647 ! facial nerve +relationship: RO:0002299 UBERON:0001647 ! results in maturation of facial nerve [Term] id: GO:0021614 @@ -60688,9 +60514,9 @@ def: "A developmental process, independent of morphogenetic (shape) change, that synonym: "CN IX maturation" RELATED [] is_a: GO:0021605 ! cranial nerve maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0001649 ! glossopharyngeal nerve +intersection_of: RO:0002299 UBERON:0001649 ! results in maturation of glossopharyngeal nerve relationship: part_of GO:0021563 ! glossopharyngeal nerve development -relationship: results_in_maturation_of UBERON:0001649 ! glossopharyngeal nerve +relationship: RO:0002299 UBERON:0001649 ! results in maturation of glossopharyngeal nerve [Term] id: GO:0021615 @@ -60700,9 +60526,9 @@ def: "The process in which the anatomical structure of the glossopharyngeal nerv synonym: "CN IX morphogenesis" RELATED [] is_a: GO:0021602 ! cranial nerve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001649 ! glossopharyngeal nerve +intersection_of: RO:0002298 UBERON:0001649 ! results in morphogenesis of glossopharyngeal nerve relationship: part_of GO:0021563 ! glossopharyngeal nerve development -relationship: results_in_morphogenesis_of UBERON:0001649 ! glossopharyngeal nerve +relationship: RO:0002298 UBERON:0001649 ! results in morphogenesis of glossopharyngeal nerve [Term] id: GO:0021616 @@ -60713,9 +60539,9 @@ synonym: "CN IX biosynthesis" RELATED [] synonym: "CN IX formation" RELATED [] is_a: GO:0021603 ! cranial nerve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001649 ! glossopharyngeal nerve +intersection_of: RO:0002297 UBERON:0001649 ! results in formation of anatomical entity glossopharyngeal nerve relationship: part_of GO:0021615 ! glossopharyngeal nerve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001649 ! glossopharyngeal nerve +relationship: RO:0002297 UBERON:0001649 ! results in formation of anatomical entity glossopharyngeal nerve [Term] id: GO:0021618 @@ -60725,9 +60551,9 @@ def: "The process in which the anatomical structure of the hypoglossal nerve is synonym: "CN XII morphogenesis" RELATED [] is_a: GO:0021602 ! cranial nerve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001650 ! hypoglossal nerve +intersection_of: RO:0002298 UBERON:0001650 ! results in morphogenesis of hypoglossal nerve relationship: part_of GO:0021566 ! hypoglossal nerve development -relationship: results_in_morphogenesis_of UBERON:0001650 ! hypoglossal nerve +relationship: RO:0002298 UBERON:0001650 ! results in morphogenesis of hypoglossal nerve [Term] id: GO:0021619 @@ -60737,9 +60563,9 @@ def: "A developmental process, independent of morphogenetic (shape) change, that synonym: "CN XII maturation" RELATED [] is_a: GO:0021605 ! cranial nerve maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0001650 ! hypoglossal nerve +intersection_of: RO:0002299 UBERON:0001650 ! results in maturation of hypoglossal nerve relationship: part_of GO:0021566 ! hypoglossal nerve development -relationship: results_in_maturation_of UBERON:0001650 ! hypoglossal nerve +relationship: RO:0002299 UBERON:0001650 ! results in maturation of hypoglossal nerve [Term] id: GO:0021620 @@ -60750,9 +60576,9 @@ synonym: "CN XII biosynthesis" RELATED [] synonym: "CN XII formation" RELATED [] is_a: GO:0021603 ! cranial nerve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001650 ! hypoglossal nerve +intersection_of: RO:0002297 UBERON:0001650 ! results in formation of anatomical entity hypoglossal nerve relationship: part_of GO:0021618 ! hypoglossal nerve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001650 ! hypoglossal nerve +relationship: RO:0002297 UBERON:0001650 ! results in formation of anatomical entity hypoglossal nerve [Term] id: GO:0021622 @@ -60762,9 +60588,9 @@ def: "The process in which the anatomical structure of the oculomotor nerve is g synonym: "CN III morphogenesis" RELATED [] is_a: GO:0021602 ! cranial nerve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001643 ! oculomotor nerve +intersection_of: RO:0002298 UBERON:0001643 ! results in morphogenesis of oculomotor nerve relationship: part_of GO:0021557 ! oculomotor nerve development -relationship: results_in_morphogenesis_of UBERON:0001643 ! oculomotor nerve +relationship: RO:0002298 UBERON:0001643 ! results in morphogenesis of oculomotor nerve [Term] id: GO:0021623 @@ -60775,9 +60601,9 @@ synonym: "CN III biosynthesis" RELATED [] synonym: "CN III formation" RELATED [] is_a: GO:0021603 ! cranial nerve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001643 ! oculomotor nerve +intersection_of: RO:0002297 UBERON:0001643 ! results in formation of anatomical entity oculomotor nerve relationship: part_of GO:0021622 ! oculomotor nerve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001643 ! oculomotor nerve +relationship: RO:0002297 UBERON:0001643 ! results in formation of anatomical entity oculomotor nerve [Term] id: GO:0021625 @@ -60787,9 +60613,9 @@ def: "A developmental process, independent of morphogenetic (shape) change, that synonym: "CN III maturation" RELATED [] is_a: GO:0021605 ! cranial nerve maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0001643 ! oculomotor nerve +intersection_of: RO:0002299 UBERON:0001643 ! results in maturation of oculomotor nerve relationship: part_of GO:0021557 ! oculomotor nerve development -relationship: results_in_maturation_of UBERON:0001643 ! oculomotor nerve +relationship: RO:0002299 UBERON:0001643 ! results in maturation of oculomotor nerve [Term] id: GO:0021626 @@ -60798,9 +60624,9 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for the central nervous system to attain its fully functional state. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0582227089] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0001017 ! central nervous system +intersection_of: RO:0002299 UBERON:0001017 ! results in maturation of central nervous system relationship: part_of GO:0007417 ! central nervous system development -relationship: results_in_maturation_of UBERON:0001017 ! central nervous system +relationship: RO:0002299 UBERON:0001017 ! results in maturation of central nervous system [Term] id: GO:0021627 @@ -60810,9 +60636,9 @@ def: "The process in which the anatomical structure of the olfactory nerve is ge synonym: "CN I morphogenesis" RELATED [] is_a: GO:0021602 ! cranial nerve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001579 ! olfactory nerve +intersection_of: RO:0002298 UBERON:0001579 ! results in morphogenesis of olfactory nerve relationship: part_of GO:0021553 ! olfactory nerve development -relationship: results_in_morphogenesis_of UBERON:0001579 ! olfactory nerve +relationship: RO:0002298 UBERON:0001579 ! results in morphogenesis of olfactory nerve [Term] id: GO:0021628 @@ -60823,9 +60649,9 @@ synonym: "CN I biosynthesis" RELATED [] synonym: "CN I formation" RELATED [] is_a: GO:0021603 ! cranial nerve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001579 ! olfactory nerve +intersection_of: RO:0002297 UBERON:0001579 ! results in formation of anatomical entity olfactory nerve relationship: part_of GO:0021627 ! olfactory nerve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001579 ! olfactory nerve +relationship: RO:0002297 UBERON:0001579 ! results in formation of anatomical entity olfactory nerve [Term] id: GO:0021630 @@ -60835,9 +60661,9 @@ def: "A developmental process, independent of morphogenetic (shape) change, that synonym: "CN I maturation" EXACT [] is_a: GO:0021605 ! cranial nerve maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0001579 ! olfactory nerve +intersection_of: RO:0002299 UBERON:0001579 ! results in maturation of olfactory nerve relationship: part_of GO:0021553 ! olfactory nerve development -relationship: results_in_maturation_of UBERON:0001579 ! olfactory nerve +relationship: RO:0002299 UBERON:0001579 ! results in maturation of olfactory nerve [Term] id: GO:0021631 @@ -60847,9 +60673,9 @@ def: "The process in which the anatomical structure of the optic nerve is genera synonym: "CN II morphogenesis" RELATED [] is_a: GO:0021602 ! cranial nerve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000941 ! cranial nerve II +intersection_of: RO:0002298 UBERON:0000941 ! results in morphogenesis of cranial nerve II relationship: part_of GO:0021554 ! optic nerve development -relationship: results_in_morphogenesis_of UBERON:0000941 ! cranial nerve II +relationship: RO:0002298 UBERON:0000941 ! results in morphogenesis of cranial nerve II [Term] id: GO:0021632 @@ -60859,9 +60685,9 @@ def: "A developmental process, independent of morphogenetic (shape) change, that synonym: "CN II maturation" EXACT [] is_a: GO:0021605 ! cranial nerve maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0000941 ! cranial nerve II +intersection_of: RO:0002299 UBERON:0000941 ! results in maturation of cranial nerve II relationship: part_of GO:0021554 ! optic nerve development -relationship: results_in_maturation_of UBERON:0000941 ! cranial nerve II +relationship: RO:0002299 UBERON:0000941 ! results in maturation of cranial nerve II [Term] id: GO:0021634 @@ -60872,9 +60698,9 @@ synonym: "CN II biosynthesis" RELATED [] synonym: "CN II formation" RELATED [] is_a: GO:0021603 ! cranial nerve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000941 ! cranial nerve II +intersection_of: RO:0002297 UBERON:0000941 ! results in formation of anatomical entity cranial nerve II relationship: part_of GO:0021631 ! optic nerve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0000941 ! cranial nerve II +relationship: RO:0002297 UBERON:0000941 ! results in formation of anatomical entity cranial nerve II [Term] id: GO:0021635 @@ -60884,9 +60710,9 @@ def: "A developmental process, independent of morphogenetic (shape) change, that synonym: "CN V maturation" RELATED [] is_a: GO:0021605 ! cranial nerve maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0001645 ! trigeminal nerve +intersection_of: RO:0002299 UBERON:0001645 ! results in maturation of trigeminal nerve relationship: part_of GO:0021559 ! trigeminal nerve development -relationship: results_in_maturation_of UBERON:0001645 ! trigeminal nerve +relationship: RO:0002299 UBERON:0001645 ! results in maturation of trigeminal nerve [Term] id: GO:0021636 @@ -60896,9 +60722,9 @@ def: "The process in which the anatomical structure of the trigeminal nerve is g synonym: "CN V morphogenesis" RELATED [] is_a: GO:0021602 ! cranial nerve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001645 ! trigeminal nerve +intersection_of: RO:0002298 UBERON:0001645 ! results in morphogenesis of trigeminal nerve relationship: part_of GO:0021559 ! trigeminal nerve development -relationship: results_in_morphogenesis_of UBERON:0001645 ! trigeminal nerve +relationship: RO:0002298 UBERON:0001645 ! results in morphogenesis of trigeminal nerve [Term] id: GO:0021638 @@ -60909,9 +60735,9 @@ synonym: "CN V biosynthesis" RELATED [] synonym: "CN V formation" RELATED [] is_a: GO:0021603 ! cranial nerve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001645 ! trigeminal nerve +intersection_of: RO:0002297 UBERON:0001645 ! results in formation of anatomical entity trigeminal nerve relationship: part_of GO:0021636 ! trigeminal nerve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001645 ! trigeminal nerve +relationship: RO:0002297 UBERON:0001645 ! results in formation of anatomical entity trigeminal nerve [Term] id: GO:0021639 @@ -60921,9 +60747,9 @@ def: "The process in which the anatomical structure of the trochlear nerve is ge synonym: "CH IV morphogenesis" RELATED [] is_a: GO:0021602 ! cranial nerve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001644 ! trochlear nerve +intersection_of: RO:0002298 UBERON:0001644 ! results in morphogenesis of trochlear nerve relationship: part_of GO:0021558 ! trochlear nerve development -relationship: results_in_morphogenesis_of UBERON:0001644 ! trochlear nerve +relationship: RO:0002298 UBERON:0001644 ! results in morphogenesis of trochlear nerve [Term] id: GO:0021640 @@ -60933,9 +60759,9 @@ def: "A developmental process, independent of morphogenetic (shape) change, that synonym: "CN IV maturation" RELATED [] is_a: GO:0021605 ! cranial nerve maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0001644 ! trochlear nerve +intersection_of: RO:0002299 UBERON:0001644 ! results in maturation of trochlear nerve relationship: part_of GO:0021558 ! trochlear nerve development -relationship: results_in_maturation_of UBERON:0001644 ! trochlear nerve +relationship: RO:0002299 UBERON:0001644 ! results in maturation of trochlear nerve [Term] id: GO:0021642 @@ -60946,9 +60772,9 @@ synonym: "CN IV biosynthesis" RELATED [] synonym: "CN IV formation" RELATED [] is_a: GO:0021603 ! cranial nerve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001644 ! trochlear nerve +intersection_of: RO:0002297 UBERON:0001644 ! results in formation of anatomical entity trochlear nerve relationship: part_of GO:0021639 ! trochlear nerve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001644 ! trochlear nerve +relationship: RO:0002297 UBERON:0001644 ! results in formation of anatomical entity trochlear nerve [Term] id: GO:0021643 @@ -60958,9 +60784,9 @@ def: "A developmental process, independent of morphogenetic (shape) change, that synonym: "CN X maturation" RELATED [] is_a: GO:0021605 ! cranial nerve maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0001759 ! vagus nerve +intersection_of: RO:0002299 UBERON:0001759 ! results in maturation of vagus nerve relationship: part_of GO:0021564 ! vagus nerve development -relationship: results_in_maturation_of UBERON:0001759 ! vagus nerve +relationship: RO:0002299 UBERON:0001759 ! results in maturation of vagus nerve [Term] id: GO:0021644 @@ -60970,9 +60796,9 @@ def: "The process in which the anatomical structure of the vagus nerve is genera synonym: "CN X morphogenesis" RELATED [] is_a: GO:0021602 ! cranial nerve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001759 ! vagus nerve +intersection_of: RO:0002298 UBERON:0001759 ! results in morphogenesis of vagus nerve relationship: part_of GO:0021564 ! vagus nerve development -relationship: results_in_morphogenesis_of UBERON:0001759 ! vagus nerve +relationship: RO:0002298 UBERON:0001759 ! results in morphogenesis of vagus nerve [Term] id: GO:0021646 @@ -60983,9 +60809,9 @@ synonym: "CN X biosynthesis" RELATED [] synonym: "CN X formation" RELATED [] is_a: GO:0021603 ! cranial nerve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001759 ! vagus nerve +intersection_of: RO:0002297 UBERON:0001759 ! results in formation of anatomical entity vagus nerve relationship: part_of GO:0021644 ! vagus nerve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001759 ! vagus nerve +relationship: RO:0002297 UBERON:0001759 ! results in formation of anatomical entity vagus nerve [Term] id: GO:0021647 @@ -60996,9 +60822,9 @@ synonym: "auditory nerve maturation" RELATED [] synonym: "CN VIII maturation" RELATED [] is_a: GO:0021605 ! cranial nerve maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0001648 ! vestibulocochlear nerve +intersection_of: RO:0002299 UBERON:0001648 ! results in maturation of vestibulocochlear nerve relationship: part_of GO:0021562 ! vestibulocochlear nerve development -relationship: results_in_maturation_of UBERON:0001648 ! vestibulocochlear nerve +relationship: RO:0002299 UBERON:0001648 ! results in maturation of vestibulocochlear nerve [Term] id: GO:0021648 @@ -61008,9 +60834,9 @@ def: "The process in which the anatomical structure of the vestibulocochlear ner synonym: "CN VIII morphogenesis" RELATED [] is_a: GO:0021602 ! cranial nerve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001648 ! vestibulocochlear nerve +intersection_of: RO:0002298 UBERON:0001648 ! results in morphogenesis of vestibulocochlear nerve relationship: part_of GO:0021562 ! vestibulocochlear nerve development -relationship: results_in_morphogenesis_of UBERON:0001648 ! vestibulocochlear nerve +relationship: RO:0002298 UBERON:0001648 ! results in morphogenesis of vestibulocochlear nerve [Term] id: GO:0021650 @@ -61020,9 +60846,9 @@ def: "The process that gives rise to the vestibulocochlear nerve. This process p synonym: "CN VII formation" RELATED [] is_a: GO:0021603 ! cranial nerve formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001648 ! vestibulocochlear nerve +intersection_of: RO:0002297 UBERON:0001648 ! results in formation of anatomical entity vestibulocochlear nerve relationship: part_of GO:0021648 ! vestibulocochlear nerve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001648 ! vestibulocochlear nerve +relationship: RO:0002297 UBERON:0001648 ! results in formation of anatomical entity vestibulocochlear nerve [Term] id: GO:0021651 @@ -61031,9 +60857,9 @@ namespace: biological_process def: "The process in which the anatomical structure of rhombomere 1 is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021593 ! rhombomere morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005499 ! rhombomere 1 +intersection_of: RO:0002298 UBERON:0005499 ! results in morphogenesis of rhombomere 1 relationship: part_of GO:0021567 ! rhombomere 1 development -relationship: results_in_morphogenesis_of UBERON:0005499 ! rhombomere 1 +relationship: RO:0002298 UBERON:0005499 ! results in morphogenesis of rhombomere 1 [Term] id: GO:0021652 @@ -61042,9 +60868,9 @@ namespace: biological_process def: "The process that gives rise to rhombomere 1. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021594 ! rhombomere formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005499 ! rhombomere 1 +intersection_of: RO:0002297 UBERON:0005499 ! results in formation of anatomical entity rhombomere 1 relationship: part_of GO:0021651 ! rhombomere 1 morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005499 ! rhombomere 1 +relationship: RO:0002297 UBERON:0005499 ! results in formation of anatomical entity rhombomere 1 [Term] id: GO:0021654 @@ -61053,9 +60879,9 @@ namespace: biological_process def: "The process that gives rise to a rhombomere boundary. This process pertains to the initial formation of a boundary delimiting a rhombomere. Rhombomeres are transverse segments of the developing rhombencephalon that are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048859 ! formation of anatomical boundary intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0018239 ! rhombomere boundary +intersection_of: RO:0002297 UBERON:0018239 ! results in formation of anatomical entity rhombomere boundary relationship: part_of GO:0021594 ! rhombomere formation -relationship: results_in_formation_of_anatomical_entity UBERON:0018239 ! rhombomere boundary +relationship: RO:0002297 UBERON:0018239 ! results in formation of anatomical entity rhombomere boundary [Term] id: GO:0021655 @@ -61064,9 +60890,9 @@ namespace: biological_process def: "The process in which the anatomical structure of rhombomere 2 is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021593 ! rhombomere morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005569 ! rhombomere 2 +intersection_of: RO:0002298 UBERON:0005569 ! results in morphogenesis of rhombomere 2 relationship: part_of GO:0021568 ! rhombomere 2 development -relationship: results_in_morphogenesis_of UBERON:0005569 ! rhombomere 2 +relationship: RO:0002298 UBERON:0005569 ! results in morphogenesis of rhombomere 2 [Term] id: GO:0021657 @@ -61075,9 +60901,9 @@ namespace: biological_process def: "The process that gives rise to rhombomere 2. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021594 ! rhombomere formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005569 ! rhombomere 2 +intersection_of: RO:0002297 UBERON:0005569 ! results in formation of anatomical entity rhombomere 2 relationship: part_of GO:0021655 ! rhombomere 2 morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005569 ! rhombomere 2 +relationship: RO:0002297 UBERON:0005569 ! results in formation of anatomical entity rhombomere 2 [Term] id: GO:0021658 @@ -61086,9 +60912,9 @@ namespace: biological_process def: "The process in which the anatomical structure of rhombomere 3 is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021593 ! rhombomere morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005507 ! rhombomere 3 +intersection_of: RO:0002298 UBERON:0005507 ! results in morphogenesis of rhombomere 3 relationship: part_of GO:0021569 ! rhombomere 3 development -relationship: results_in_morphogenesis_of UBERON:0005507 ! rhombomere 3 +relationship: RO:0002298 UBERON:0005507 ! results in morphogenesis of rhombomere 3 [Term] id: GO:0021660 @@ -61097,9 +60923,9 @@ namespace: biological_process def: "The process that gives rise to rhombomere 3. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021594 ! rhombomere formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005507 ! rhombomere 3 +intersection_of: RO:0002297 UBERON:0005507 ! results in formation of anatomical entity rhombomere 3 relationship: part_of GO:0021658 ! rhombomere 3 morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005507 ! rhombomere 3 +relationship: RO:0002297 UBERON:0005507 ! results in formation of anatomical entity rhombomere 3 [Term] id: GO:0021661 @@ -61108,9 +60934,9 @@ namespace: biological_process def: "The process in which the anatomical structure of rhombomere 4 is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021593 ! rhombomere morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005511 ! rhombomere 4 +intersection_of: RO:0002298 UBERON:0005511 ! results in morphogenesis of rhombomere 4 relationship: part_of GO:0021570 ! rhombomere 4 development -relationship: results_in_morphogenesis_of UBERON:0005511 ! rhombomere 4 +relationship: RO:0002298 UBERON:0005511 ! results in morphogenesis of rhombomere 4 [Term] id: GO:0021663 @@ -61119,9 +60945,9 @@ namespace: biological_process def: "The process that gives rise to rhombomere 4. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021594 ! rhombomere formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005511 ! rhombomere 4 +intersection_of: RO:0002297 UBERON:0005511 ! results in formation of anatomical entity rhombomere 4 relationship: part_of GO:0021661 ! rhombomere 4 morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005511 ! rhombomere 4 +relationship: RO:0002297 UBERON:0005511 ! results in formation of anatomical entity rhombomere 4 [Term] id: GO:0021664 @@ -61130,9 +60956,9 @@ namespace: biological_process def: "The process in which the anatomical structures of rhombomere 5 are generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021593 ! rhombomere morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005515 ! rhombomere 5 +intersection_of: RO:0002298 UBERON:0005515 ! results in morphogenesis of rhombomere 5 relationship: part_of GO:0021571 ! rhombomere 5 development -relationship: results_in_morphogenesis_of UBERON:0005515 ! rhombomere 5 +relationship: RO:0002298 UBERON:0005515 ! results in morphogenesis of rhombomere 5 [Term] id: GO:0021666 @@ -61141,9 +60967,9 @@ namespace: biological_process def: "The process that gives rise to rhombomere 5. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021594 ! rhombomere formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005515 ! rhombomere 5 +intersection_of: RO:0002297 UBERON:0005515 ! results in formation of anatomical entity rhombomere 5 relationship: part_of GO:0021664 ! rhombomere 5 morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005515 ! rhombomere 5 +relationship: RO:0002297 UBERON:0005515 ! results in formation of anatomical entity rhombomere 5 [Term] id: GO:0021667 @@ -61152,9 +60978,9 @@ namespace: biological_process def: "The process in which the anatomical structure of rhombomere 6 is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021593 ! rhombomere morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005519 ! rhombomere 6 +intersection_of: RO:0002298 UBERON:0005519 ! results in morphogenesis of rhombomere 6 relationship: part_of GO:0021572 ! rhombomere 6 development -relationship: results_in_morphogenesis_of UBERON:0005519 ! rhombomere 6 +relationship: RO:0002298 UBERON:0005519 ! results in morphogenesis of rhombomere 6 [Term] id: GO:0021669 @@ -61163,9 +60989,9 @@ namespace: biological_process def: "The process that gives rise to rhombomere 6. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021594 ! rhombomere formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005519 ! rhombomere 6 +intersection_of: RO:0002297 UBERON:0005519 ! results in formation of anatomical entity rhombomere 6 relationship: part_of GO:0021667 ! rhombomere 6 morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005519 ! rhombomere 6 +relationship: RO:0002297 UBERON:0005519 ! results in formation of anatomical entity rhombomere 6 [Term] id: GO:0021670 @@ -61174,10 +61000,10 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the lateral ventricles over time, from the formation to the mature structure. The two lateral ventricles are a cavity in each of the cerebral hemispheres derived from the cavity of the embryonic neural tube. They are separated from each other by the septum pellucidum, and each communicates with the third ventricle by the foramen of Monro, through which also the choroid plexuses of the lateral ventricles become continuous with that of the third ventricle." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002285 ! telencephalic ventricle +intersection_of: RO:0002296 UBERON:0002285 ! results in development of telencephalic ventricle relationship: part_of GO:0021537 ! telencephalon development relationship: part_of GO:0021591 ! ventricular system development -relationship: results_in_development_of UBERON:0002285 ! telencephalic ventricle +relationship: RO:0002296 UBERON:0002285 ! results in development of telencephalic ventricle [Term] id: GO:0021671 @@ -61186,9 +61012,9 @@ namespace: biological_process def: "The process in which the anatomical structure of rhombomere 7 is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021593 ! rhombomere morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005523 ! rhombomere 7 +intersection_of: RO:0002298 UBERON:0005523 ! results in morphogenesis of rhombomere 7 relationship: part_of GO:0021573 ! rhombomere 7 development -relationship: results_in_morphogenesis_of UBERON:0005523 ! rhombomere 7 +relationship: RO:0002298 UBERON:0005523 ! results in morphogenesis of rhombomere 7 [Term] id: GO:0021673 @@ -61197,9 +61023,9 @@ namespace: biological_process def: "The process that gives rise to rhombomere 7. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021594 ! rhombomere formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005523 ! rhombomere 7 +intersection_of: RO:0002297 UBERON:0005523 ! results in formation of anatomical entity rhombomere 7 relationship: part_of GO:0021671 ! rhombomere 7 morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005523 ! rhombomere 7 +relationship: RO:0002297 UBERON:0005523 ! results in formation of anatomical entity rhombomere 7 [Term] id: GO:0021674 @@ -61208,9 +61034,9 @@ namespace: biological_process def: "The process in which the anatomical structure of rhombomere 8 is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021593 ! rhombomere morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005527 ! rhombomere 8 +intersection_of: RO:0002298 UBERON:0005527 ! results in morphogenesis of rhombomere 8 relationship: part_of GO:0021574 ! rhombomere 8 development -relationship: results_in_morphogenesis_of UBERON:0005527 ! rhombomere 8 +relationship: RO:0002298 UBERON:0005527 ! results in morphogenesis of rhombomere 8 [Term] id: GO:0021675 @@ -61219,9 +61045,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a nerve over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001021 ! nerve +intersection_of: RO:0002296 UBERON:0001021 ! results in development of nerve relationship: part_of GO:0007399 ! nervous system development -relationship: results_in_development_of UBERON:0001021 ! nerve +relationship: RO:0002296 UBERON:0001021 ! results in development of nerve [Term] id: GO:0021677 @@ -61230,9 +61056,9 @@ namespace: biological_process def: "The process that gives rise to rhombomere 8. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021594 ! rhombomere formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005527 ! rhombomere 8 +intersection_of: RO:0002297 UBERON:0005527 ! results in formation of anatomical entity rhombomere 8 relationship: part_of GO:0021674 ! rhombomere 8 morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005527 ! rhombomere 8 +relationship: RO:0002297 UBERON:0005527 ! results in formation of anatomical entity rhombomere 8 [Term] id: GO:0021678 @@ -61241,9 +61067,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the third ventricle over time, from its formation to the mature structure. The third ventricle is the narrow cleft inferior to the corpus callosum, within the diencephalon, between the paired thalami. Its floor is formed by the hypothalamus, its anterior wall by the lamina terminalis, and its roof by ependyma, and it communicates with the fourth ventricle by the cerebral aqueduct, and with the lateral ventricles by the interventricular foramina." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002286 ! third ventricle +intersection_of: RO:0002296 UBERON:0002286 ! results in development of third ventricle relationship: part_of GO:0021591 ! ventricular system development -relationship: results_in_development_of UBERON:0002286 ! third ventricle +relationship: RO:0002296 UBERON:0002286 ! results in development of third ventricle [Term] id: GO:0021679 @@ -61252,9 +61078,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the cerebellar molecular layer nerve over time, from its formation to the mature structure. The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002974 ! molecular layer of cerebellar cortex +intersection_of: RO:0002296 UBERON:0002974 ! results in development of molecular layer of cerebellar cortex relationship: part_of GO:0021695 ! cerebellar cortex development -relationship: results_in_development_of UBERON:0002974 ! molecular layer of cerebellar cortex +relationship: RO:0002296 UBERON:0002974 ! results in development of molecular layer of cerebellar cortex [Term] id: GO:0021680 @@ -61263,9 +61089,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the cerebellar Purkinje cell layer over time, from its formation to the mature structure. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002979 ! Purkinje cell layer of cerebellar cortex +intersection_of: RO:0002296 UBERON:0002979 ! results in development of Purkinje cell layer of cerebellar cortex relationship: part_of GO:0021695 ! cerebellar cortex development -relationship: results_in_development_of UBERON:0002979 ! Purkinje cell layer of cerebellar cortex +relationship: RO:0002296 UBERON:0002979 ! results in development of Purkinje cell layer of cerebellar cortex [Term] id: GO:0021681 @@ -61274,9 +61100,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the cerebellar granule layer over time, from its formation to the mature structure. The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002956 ! granular layer of cerebellar cortex +intersection_of: RO:0002296 UBERON:0002956 ! results in development of granular layer of cerebellar cortex relationship: part_of GO:0021695 ! cerebellar cortex development -relationship: results_in_development_of UBERON:0002956 ! granular layer of cerebellar cortex +relationship: RO:0002296 UBERON:0002956 ! results in development of granular layer of cerebellar cortex [Term] id: GO:0021682 @@ -61285,9 +61111,9 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for a nerve to attain its fully functional state." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0001021 ! nerve +intersection_of: RO:0002299 UBERON:0001021 ! results in maturation of nerve relationship: part_of GO:0021675 ! nerve development -relationship: results_in_maturation_of UBERON:0001021 ! nerve +relationship: RO:0002299 UBERON:0001021 ! results in maturation of nerve [Term] id: GO:0021683 @@ -61296,10 +61122,10 @@ namespace: biological_process def: "The process in which the anatomical structure of the cerebellar granular layer is generated and organized. The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002956 ! granular layer of cerebellar cortex +intersection_of: RO:0002298 UBERON:0002956 ! results in morphogenesis of granular layer of cerebellar cortex relationship: part_of GO:0021681 ! cerebellar granular layer development relationship: part_of GO:0021696 ! cerebellar cortex morphogenesis -relationship: results_in_morphogenesis_of UBERON:0002956 ! granular layer of cerebellar cortex +relationship: RO:0002298 UBERON:0002956 ! results in morphogenesis of granular layer of cerebellar cortex [Term] id: GO:0021684 @@ -61308,10 +61134,10 @@ namespace: biological_process def: "The process that gives rise to the cerebellar granule layer. This process pertains to the initial formation of a structure from unspecified parts. The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002956 ! granular layer of cerebellar cortex +intersection_of: RO:0002297 UBERON:0002956 ! results in formation of anatomical entity granular layer of cerebellar cortex relationship: part_of GO:0021683 ! cerebellar granular layer morphogenesis relationship: part_of GO:0021697 ! cerebellar cortex formation -relationship: results_in_formation_of_anatomical_entity UBERON:0002956 ! granular layer of cerebellar cortex +relationship: RO:0002297 UBERON:0002956 ! results in formation of anatomical entity granular layer of cerebellar cortex [Term] id: GO:0021686 @@ -61320,10 +61146,10 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for the cerebellar granular layer to attain its fully functional state. The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0002956 ! granular layer of cerebellar cortex +intersection_of: RO:0002299 UBERON:0002956 ! results in maturation of granular layer of cerebellar cortex relationship: part_of GO:0021681 ! cerebellar granular layer development relationship: part_of GO:0021699 ! cerebellar cortex maturation -relationship: results_in_maturation_of UBERON:0002956 ! granular layer of cerebellar cortex +relationship: RO:0002299 UBERON:0002956 ! results in maturation of granular layer of cerebellar cortex [Term] id: GO:0021687 @@ -61332,10 +61158,10 @@ namespace: biological_process def: "The process in which the anatomical structure of the cerebellar molecular layer is generated and organized. The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002974 ! molecular layer of cerebellar cortex +intersection_of: RO:0002298 UBERON:0002974 ! results in morphogenesis of molecular layer of cerebellar cortex relationship: part_of GO:0021679 ! cerebellar molecular layer development relationship: part_of GO:0021696 ! cerebellar cortex morphogenesis -relationship: results_in_morphogenesis_of UBERON:0002974 ! molecular layer of cerebellar cortex +relationship: RO:0002298 UBERON:0002974 ! results in morphogenesis of molecular layer of cerebellar cortex [Term] id: GO:0021688 @@ -61344,10 +61170,10 @@ namespace: biological_process def: "The process that gives rise to the cerebellar molecular layer. This process pertains to the initial formation of a structure from unspecified parts. The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002974 ! molecular layer of cerebellar cortex +intersection_of: RO:0002297 UBERON:0002974 ! results in formation of anatomical entity molecular layer of cerebellar cortex relationship: part_of GO:0021687 ! cerebellar molecular layer morphogenesis relationship: part_of GO:0021697 ! cerebellar cortex formation -relationship: results_in_formation_of_anatomical_entity UBERON:0002974 ! molecular layer of cerebellar cortex +relationship: RO:0002297 UBERON:0002974 ! results in formation of anatomical entity molecular layer of cerebellar cortex [Term] id: GO:0021690 @@ -61356,10 +61182,10 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for the cerebellar molecular layer to attain its fully functional state. The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0002974 ! molecular layer of cerebellar cortex +intersection_of: RO:0002299 UBERON:0002974 ! results in maturation of molecular layer of cerebellar cortex relationship: part_of GO:0021679 ! cerebellar molecular layer development relationship: part_of GO:0021699 ! cerebellar cortex maturation -relationship: results_in_maturation_of UBERON:0002974 ! molecular layer of cerebellar cortex +relationship: RO:0002299 UBERON:0002974 ! results in maturation of molecular layer of cerebellar cortex [Term] id: GO:0021691 @@ -61368,10 +61194,10 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for the cerebellar Purkinje cell layer to attain its fully functional state. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0002979 ! Purkinje cell layer of cerebellar cortex +intersection_of: RO:0002299 UBERON:0002979 ! results in maturation of Purkinje cell layer of cerebellar cortex relationship: part_of GO:0021680 ! cerebellar Purkinje cell layer development relationship: part_of GO:0021699 ! cerebellar cortex maturation -relationship: results_in_maturation_of UBERON:0002979 ! Purkinje cell layer of cerebellar cortex +relationship: RO:0002299 UBERON:0002979 ! results in maturation of Purkinje cell layer of cerebellar cortex [Term] id: GO:0021692 @@ -61380,10 +61206,10 @@ namespace: biological_process def: "The process in which the anatomical structure of the cerebellar Purkinje cell layer is generated and organized. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002979 ! Purkinje cell layer of cerebellar cortex +intersection_of: RO:0002298 UBERON:0002979 ! results in morphogenesis of Purkinje cell layer of cerebellar cortex relationship: part_of GO:0021680 ! cerebellar Purkinje cell layer development relationship: part_of GO:0021696 ! cerebellar cortex morphogenesis -relationship: results_in_morphogenesis_of UBERON:0002979 ! Purkinje cell layer of cerebellar cortex +relationship: RO:0002298 UBERON:0002979 ! results in morphogenesis of Purkinje cell layer of cerebellar cortex [Term] id: GO:0021694 @@ -61392,10 +61218,10 @@ namespace: biological_process def: "The process that gives rise to the cerebellar Purkinje cell layer. This process pertains to the initial formation of a structure from unspecified parts. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002979 ! Purkinje cell layer of cerebellar cortex +intersection_of: RO:0002297 UBERON:0002979 ! results in formation of anatomical entity Purkinje cell layer of cerebellar cortex relationship: part_of GO:0021692 ! cerebellar Purkinje cell layer morphogenesis relationship: part_of GO:0021697 ! cerebellar cortex formation -relationship: results_in_formation_of_anatomical_entity UBERON:0002979 ! Purkinje cell layer of cerebellar cortex +relationship: RO:0002297 UBERON:0002979 ! results in formation of anatomical entity Purkinje cell layer of cerebellar cortex [Term] id: GO:0021695 @@ -61404,9 +61230,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the cerebellar cortex over time, from its formation to the mature structure. The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002129 ! cerebellar cortex +intersection_of: RO:0002296 UBERON:0002129 ! results in development of cerebellar cortex relationship: part_of GO:0021549 ! cerebellum development -relationship: results_in_development_of UBERON:0002129 ! cerebellar cortex +relationship: RO:0002296 UBERON:0002129 ! results in development of cerebellar cortex [Term] id: GO:0021696 @@ -61415,10 +61241,10 @@ namespace: biological_process def: "The process in which the anatomical structure of the cranial nerves are generated and organized. The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002129 ! cerebellar cortex +intersection_of: RO:0002298 UBERON:0002129 ! results in morphogenesis of cerebellar cortex relationship: part_of GO:0021587 ! cerebellum morphogenesis relationship: part_of GO:0021695 ! cerebellar cortex development -relationship: results_in_morphogenesis_of UBERON:0002129 ! cerebellar cortex +relationship: RO:0002298 UBERON:0002129 ! results in morphogenesis of cerebellar cortex [Term] id: GO:0021697 @@ -61427,9 +61253,9 @@ namespace: biological_process def: "The process that gives rise to the cerebellar cortex. This process pertains to the initial formation of a structure from unspecified parts. The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002129 ! cerebellar cortex +intersection_of: RO:0002297 UBERON:0002129 ! results in formation of anatomical entity cerebellar cortex relationship: part_of GO:0021696 ! cerebellar cortex morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002129 ! cerebellar cortex +relationship: RO:0002297 UBERON:0002129 ! results in formation of anatomical entity cerebellar cortex [Term] id: GO:0021699 @@ -61438,10 +61264,10 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for the cerebellar cortex to attain its fully functional state. The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0002129 ! cerebellar cortex +intersection_of: RO:0002299 UBERON:0002129 ! results in maturation of cerebellar cortex relationship: part_of GO:0021590 ! cerebellum maturation relationship: part_of GO:0021695 ! cerebellar cortex development -relationship: results_in_maturation_of UBERON:0002129 ! cerebellar cortex +relationship: RO:0002299 UBERON:0002129 ! results in maturation of cerebellar cortex [Term] id: GO:0021700 @@ -61460,9 +61286,9 @@ is_a: GO:0021533 ! cell differentiation in hindbrain is_a: GO:0021953 ! central nervous system neuron differentiation is_a: GO:0097154 ! GABAergic neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000119 ! cerebellar Golgi cell +intersection_of: RO:0002315 CL:0000119 ! results in acquisition of features of cerebellar Golgi cell relationship: part_of GO:0021684 ! cerebellar granular layer formation -relationship: results_in_acquisition_of_features_of CL:0000119 ! cerebellar Golgi cell +relationship: RO:0002315 CL:0000119 ! results in acquisition of features of cerebellar Golgi cell [Term] id: GO:0021702 @@ -61472,9 +61298,9 @@ def: "The process in which neuroblasts acquire specialized structural and/or fun is_a: GO:0021533 ! cell differentiation in hindbrain is_a: GO:0021953 ! central nervous system neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000121 ! Purkinje cell +intersection_of: RO:0002315 CL:0000121 ! results in acquisition of features of Purkinje cell relationship: part_of GO:0021694 ! cerebellar Purkinje cell layer formation -relationship: results_in_acquisition_of_features_of CL:0000121 ! Purkinje cell +relationship: RO:0002315 CL:0000121 ! results in acquisition of features of Purkinje cell [Term] id: GO:0021703 @@ -61485,9 +61311,9 @@ synonym: "locus caeruleus development" EXACT [] synonym: "locus coeruleus development" EXACT [] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002148 ! locus ceruleus +intersection_of: RO:0002296 UBERON:0002148 ! results in development of locus ceruleus relationship: part_of GO:0021548 ! pons development -relationship: results_in_development_of UBERON:0002148 ! locus ceruleus +relationship: RO:0002296 UBERON:0002148 ! results in development of locus ceruleus [Term] id: GO:0021704 @@ -61496,10 +61322,10 @@ namespace: biological_process def: "The process in which the anatomical structure of the locus ceruleus is generated and organized. In mice, the locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002148 ! locus ceruleus +intersection_of: RO:0002298 UBERON:0002148 ! results in morphogenesis of locus ceruleus relationship: part_of GO:0021583 ! pons morphogenesis relationship: part_of GO:0021703 ! locus ceruleus development -relationship: results_in_morphogenesis_of UBERON:0002148 ! locus ceruleus +relationship: RO:0002298 UBERON:0002148 ! results in morphogenesis of locus ceruleus [Term] id: GO:0021705 @@ -61508,10 +61334,10 @@ namespace: biological_process def: "The process that gives rise to the locus ceruleus. This process pertains to the initial formation of a structure from unspecified parts. In mice, the locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002148 ! locus ceruleus +intersection_of: RO:0002297 UBERON:0002148 ! results in formation of anatomical entity locus ceruleus relationship: part_of GO:0021584 ! pons formation relationship: part_of GO:0021704 ! locus ceruleus morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002148 ! locus ceruleus +relationship: RO:0002297 UBERON:0002148 ! results in formation of anatomical entity locus ceruleus [Term] id: GO:0021706 @@ -61520,10 +61346,10 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for the locus ceruleus to attain its fully functional state. The locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0002148 ! locus ceruleus +intersection_of: RO:0002299 UBERON:0002148 ! results in maturation of locus ceruleus relationship: part_of GO:0021586 ! pons maturation relationship: part_of GO:0021703 ! locus ceruleus development -relationship: results_in_maturation_of UBERON:0002148 ! locus ceruleus +relationship: RO:0002299 UBERON:0002148 ! results in maturation of locus ceruleus [Term] id: GO:0021707 @@ -61534,9 +61360,9 @@ is_a: GO:0021533 ! cell differentiation in hindbrain is_a: GO:0021953 ! central nervous system neuron differentiation is_a: GO:1905962 ! glutamatergic neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0001031 ! cerebellar granule cell +intersection_of: RO:0002315 CL:0001031 ! results in acquisition of features of cerebellar granule cell relationship: part_of GO:0021684 ! cerebellar granular layer formation -relationship: results_in_acquisition_of_features_of CL:0001031 ! cerebellar granule cell +relationship: RO:0002315 CL:0001031 ! results in acquisition of features of cerebellar granule cell [Term] id: GO:0021710 @@ -61546,9 +61372,9 @@ def: "The process in which neuroblasts acquire specialized structural and/or fun is_a: GO:0021533 ! cell differentiation in hindbrain is_a: GO:0021953 ! central nervous system neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0010010 ! cerebellar stellate cell +intersection_of: RO:0002315 CL:0010010 ! results in acquisition of features of cerebellar stellate cell relationship: part_of GO:0021688 ! cerebellar molecular layer formation -relationship: results_in_acquisition_of_features_of CL:0010010 ! cerebellar stellate cell +relationship: RO:0002315 CL:0010010 ! results in acquisition of features of cerebellar stellate cell [Term] id: GO:0021713 @@ -61558,9 +61384,9 @@ def: "The process whose specific outcome is the progression of the inferior oliv synonym: "inferior olive development" RELATED [] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0007244 ! inferior olivary nucleus +intersection_of: RO:0002296 UBERON:0007244 ! results in development of inferior olivary nucleus relationship: part_of GO:0021550 ! medulla oblongata development -relationship: results_in_development_of UBERON:0007244 ! inferior olivary nucleus +relationship: RO:0002296 UBERON:0007244 ! results in development of inferior olivary nucleus [Term] id: GO:0021714 @@ -61570,10 +61396,10 @@ def: "The process in which the anatomical structure of the inferior olivary nucl synonym: "inferior olive morphogenesis" RELATED [] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0007244 ! inferior olivary nucleus +intersection_of: RO:0002298 UBERON:0007244 ! results in morphogenesis of inferior olivary nucleus relationship: part_of GO:0021579 ! medulla oblongata morphogenesis relationship: part_of GO:0021713 ! inferior olivary nucleus development -relationship: results_in_morphogenesis_of UBERON:0007244 ! inferior olivary nucleus +relationship: RO:0002298 UBERON:0007244 ! results in morphogenesis of inferior olivary nucleus [Term] id: GO:0021715 @@ -61584,10 +61410,10 @@ synonym: "inferior olive biosynthesis" RELATED [] synonym: "inferior olive formation" RELATED [] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0007244 ! inferior olivary nucleus +intersection_of: RO:0002297 UBERON:0007244 ! results in formation of anatomical entity inferior olivary nucleus relationship: part_of GO:0021580 ! medulla oblongata formation relationship: part_of GO:0021714 ! inferior olivary nucleus morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0007244 ! inferior olivary nucleus +relationship: RO:0002297 UBERON:0007244 ! results in formation of anatomical entity inferior olivary nucleus [Term] id: GO:0021717 @@ -61597,10 +61423,10 @@ def: "A developmental process, independent of morphogenetic (shape) change, that synonym: "inferior olive maturation" RELATED [] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0007244 ! inferior olivary nucleus +intersection_of: RO:0002299 UBERON:0007244 ! results in maturation of inferior olivary nucleus relationship: part_of GO:0021582 ! medulla oblongata maturation relationship: part_of GO:0021713 ! inferior olivary nucleus development -relationship: results_in_maturation_of UBERON:0007244 ! inferior olivary nucleus +relationship: RO:0002299 UBERON:0007244 ! results in maturation of inferior olivary nucleus [Term] id: GO:0021718 @@ -61610,9 +61436,9 @@ def: "The process whose specific outcome is the progression of the superior oliv synonym: "superior olive development" RELATED [] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0007247 ! nucleus of superior olivary complex +intersection_of: RO:0002296 UBERON:0007247 ! results in development of nucleus of superior olivary complex relationship: part_of GO:0021548 ! pons development -relationship: results_in_development_of UBERON:0007247 ! nucleus of superior olivary complex +relationship: RO:0002296 UBERON:0007247 ! results in development of nucleus of superior olivary complex [Term] id: GO:0021719 @@ -61622,10 +61448,10 @@ def: "The process in which the anatomical structure of the superior olivary nucl synonym: "superior olive morphogenesis" RELATED [] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0007247 ! nucleus of superior olivary complex +intersection_of: RO:0002298 UBERON:0007247 ! results in morphogenesis of nucleus of superior olivary complex relationship: part_of GO:0021583 ! pons morphogenesis relationship: part_of GO:0021718 ! superior olivary nucleus development -relationship: results_in_morphogenesis_of UBERON:0007247 ! nucleus of superior olivary complex +relationship: RO:0002298 UBERON:0007247 ! results in morphogenesis of nucleus of superior olivary complex [Term] id: GO:0021720 @@ -61634,10 +61460,10 @@ namespace: biological_process def: "The process that gives rise to the superior olivary nucleus. This process pertains to the initial formation of a structure from unspecified parts. In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0007247 ! nucleus of superior olivary complex +intersection_of: RO:0002297 UBERON:0007247 ! results in formation of anatomical entity nucleus of superior olivary complex relationship: part_of GO:0021584 ! pons formation relationship: part_of GO:0021719 ! superior olivary nucleus morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0007247 ! nucleus of superior olivary complex +relationship: RO:0002297 UBERON:0007247 ! results in formation of anatomical entity nucleus of superior olivary complex [Term] id: GO:0021722 @@ -61647,10 +61473,10 @@ def: "A developmental process, independent of morphogenetic (shape) change, that synonym: "superior olive maturation" RELATED [] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0007247 ! nucleus of superior olivary complex +intersection_of: RO:0002299 UBERON:0007247 ! results in maturation of nucleus of superior olivary complex relationship: part_of GO:0021586 ! pons maturation relationship: part_of GO:0021718 ! superior olivary nucleus development -relationship: results_in_maturation_of UBERON:0007247 ! nucleus of superior olivary complex +relationship: RO:0002299 UBERON:0007247 ! results in maturation of nucleus of superior olivary complex [Term] id: GO:0021723 @@ -61660,9 +61486,9 @@ def: "The process whose specific outcome is the progression of the medullary ret synonym: "rhombencephalic reticular formation development" BROAD [] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002559 ! medullary reticular formation +intersection_of: RO:0002296 UBERON:0002559 ! results in development of medullary reticular formation relationship: part_of GO:0021550 ! medulla oblongata development -relationship: results_in_development_of UBERON:0002559 ! medullary reticular formation +relationship: RO:0002296 UBERON:0002559 ! results in development of medullary reticular formation [Term] id: GO:0021724 @@ -61673,11 +61499,11 @@ synonym: "inferior central nucleus development" BROAD [] synonym: "posterior raphe nucleus development" BROAD [] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002043 ! dorsal raphe nucleus +intersection_of: RO:0002296 UBERON:0002043 ! results in development of dorsal raphe nucleus relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of GO:0021723 ! medullary reticular formation development -relationship: results_in_development_of UBERON:0002043 ! dorsal raphe nucleus +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata +relationship: RO:0002296 UBERON:0002043 ! results in development of dorsal raphe nucleus [Term] id: GO:0021725 @@ -61688,11 +61514,11 @@ synonym: "anterior raphe nucleus development" BROAD [] synonym: "superior central nucleus development" BROAD [] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:2000440 ! superior raphe nucleus +intersection_of: RO:0002296 UBERON:2000440 ! results in development of superior raphe nucleus relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of GO:0021723 ! medullary reticular formation development -relationship: results_in_development_of UBERON:2000440 ! superior raphe nucleus +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata +relationship: RO:0002296 UBERON:2000440 ! results in development of superior raphe nucleus [Term] id: GO:0021726 @@ -61701,9 +61527,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the lateral reticular nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002154 ! lateral reticular nucleus +intersection_of: RO:0002296 UBERON:0002154 ! results in development of lateral reticular nucleus relationship: part_of GO:0021723 ! medullary reticular formation development -relationship: results_in_development_of UBERON:0002154 ! lateral reticular nucleus +relationship: RO:0002296 UBERON:0002154 ! results in development of lateral reticular nucleus [Term] id: GO:0021727 @@ -61713,9 +61539,9 @@ def: "The process whose specific outcome is the progression of the intermediate synonym: "intermediate reticular nucleus development" EXACT [http://www.brainspan.org] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0009776 ! intermediate reticular formation +intersection_of: RO:0002296 UBERON:0009776 ! results in development of intermediate reticular formation relationship: part_of GO:0021723 ! medullary reticular formation development -relationship: results_in_development_of UBERON:0009776 ! intermediate reticular formation +relationship: RO:0002296 UBERON:0009776 ! results in development of intermediate reticular formation [Term] id: GO:0021728 @@ -61724,9 +61550,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the inferior reticular formation over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:2000523 ! inferior reticular formation +intersection_of: RO:0002296 UBERON:2000523 ! results in development of inferior reticular formation relationship: part_of GO:0021723 ! medullary reticular formation development -relationship: results_in_development_of UBERON:2000523 ! inferior reticular formation +relationship: RO:0002296 UBERON:2000523 ! results in development of inferior reticular formation [Term] id: GO:0021729 @@ -61735,9 +61561,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the superior reticular formation over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004166 ! superior reticular formation +intersection_of: RO:0002296 UBERON:0004166 ! results in development of superior reticular formation relationship: part_of GO:0021723 ! medullary reticular formation development -relationship: results_in_development_of UBERON:0004166 ! superior reticular formation +relationship: RO:0002296 UBERON:0004166 ! results in development of superior reticular formation [Term] id: GO:0021730 @@ -61747,9 +61573,9 @@ def: "The process whose specific outcome is the progression of the trigeminal se comment: Note that this term was placed as a child of 'brain development' because the nucleus spans multiple brain regions from midbrain to spinal cord. is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004132 ! trigeminal sensory nucleus +intersection_of: RO:0002296 UBERON:0004132 ! results in development of trigeminal sensory nucleus relationship: part_of GO:0007420 ! brain development -relationship: results_in_development_of UBERON:0004132 ! trigeminal sensory nucleus +relationship: RO:0002296 UBERON:0004132 ! results in development of trigeminal sensory nucleus [Term] id: GO:0021731 @@ -61758,9 +61584,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the trigeminal motor nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002633 ! motor nucleus of trigeminal nerve +intersection_of: RO:0002296 UBERON:0002633 ! results in development of motor nucleus of trigeminal nerve relationship: part_of GO:0021548 ! pons development -relationship: results_in_development_of UBERON:0002633 ! motor nucleus of trigeminal nerve +relationship: RO:0002296 UBERON:0002633 ! results in development of motor nucleus of trigeminal nerve [Term] id: GO:0021732 @@ -61771,9 +61597,9 @@ synonym: "isthmus maturation" RELATED [] synonym: "MHB maturation" RELATED [] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0003052 ! midbrain-hindbrain boundary +intersection_of: RO:0002299 UBERON:0003052 ! results in maturation of midbrain-hindbrain boundary relationship: part_of GO:0030917 ! midbrain-hindbrain boundary development -relationship: results_in_maturation_of UBERON:0003052 ! midbrain-hindbrain boundary +relationship: RO:0002299 UBERON:0003052 ! results in maturation of midbrain-hindbrain boundary [Term] id: GO:0021735 @@ -61782,9 +61608,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the dentate nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002132 ! dentate nucleus +intersection_of: RO:0002296 UBERON:0002132 ! results in development of dentate nucleus relationship: part_of GO:0021549 ! cerebellum development -relationship: results_in_development_of UBERON:0002132 ! dentate nucleus +relationship: RO:0002296 UBERON:0002132 ! results in development of dentate nucleus [Term] id: GO:0021736 @@ -61793,9 +61619,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the globose nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002613 ! cerebellum globose nucleus +intersection_of: RO:0002296 UBERON:0002613 ! results in development of cerebellum globose nucleus relationship: part_of GO:0021549 ! cerebellum development -relationship: results_in_development_of UBERON:0002613 ! cerebellum globose nucleus +relationship: RO:0002296 UBERON:0002613 ! results in development of cerebellum globose nucleus [Term] id: GO:0021737 @@ -61804,9 +61630,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the emboliform nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002602 ! emboliform nucleus +intersection_of: RO:0002296 UBERON:0002602 ! results in development of emboliform nucleus relationship: part_of GO:0021549 ! cerebellum development -relationship: results_in_development_of UBERON:0002602 ! emboliform nucleus +relationship: RO:0002296 UBERON:0002602 ! results in development of emboliform nucleus [Term] id: GO:0021738 @@ -61815,9 +61641,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the fastigial nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002153 ! fastigial nucleus +intersection_of: RO:0002296 UBERON:0002153 ! results in development of fastigial nucleus relationship: part_of GO:0021549 ! cerebellum development -relationship: results_in_development_of UBERON:0002153 ! fastigial nucleus +relationship: RO:0002296 UBERON:0002153 ! results in development of fastigial nucleus [Term] id: GO:0021739 @@ -61826,8 +61652,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the mesencephalic trigeminal nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021730 ! trigeminal sensory nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001718 ! mesencephalic nucleus of trigeminal nerve -relationship: results_in_development_of UBERON:0001718 ! mesencephalic nucleus of trigeminal nerve +intersection_of: RO:0002296 UBERON:0001718 ! results in development of mesencephalic nucleus of trigeminal nerve +relationship: RO:0002296 UBERON:0001718 ! results in development of mesencephalic nucleus of trigeminal nerve [Term] id: GO:0021740 @@ -61838,8 +61664,8 @@ comment: Note that this term was placed as a child of 'brain development' becaus synonym: "pontine nucleus development" BROAD [GOC:dph] is_a: GO:0021730 ! trigeminal sensory nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002597 ! principal sensory nucleus of trigeminal nerve -relationship: results_in_development_of UBERON:0002597 ! principal sensory nucleus of trigeminal nerve +intersection_of: RO:0002296 UBERON:0002597 ! results in development of principal sensory nucleus of trigeminal nerve +relationship: RO:0002296 UBERON:0002597 ! results in development of principal sensory nucleus of trigeminal nerve [Term] id: GO:0021741 @@ -61848,8 +61674,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the spinal trigeminal nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021730 ! trigeminal sensory nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001717 ! spinal nucleus of trigeminal nerve -relationship: results_in_development_of UBERON:0001717 ! spinal nucleus of trigeminal nerve +intersection_of: RO:0002296 UBERON:0001717 ! results in development of spinal nucleus of trigeminal nerve +relationship: RO:0002296 UBERON:0001717 ! results in development of spinal nucleus of trigeminal nerve [Term] id: GO:0021742 @@ -61858,9 +61684,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the abducens nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002682 ! abducens nucleus +intersection_of: RO:0002296 UBERON:0002682 ! results in development of abducens nucleus relationship: part_of GO:0021548 ! pons development -relationship: results_in_development_of UBERON:0002682 ! abducens nucleus +relationship: RO:0002296 UBERON:0002682 ! results in development of abducens nucleus [Term] id: GO:0021743 @@ -61869,9 +61695,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the hypoglossal nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002871 ! hypoglossal nucleus +intersection_of: RO:0002296 UBERON:0002871 ! results in development of hypoglossal nucleus relationship: part_of GO:0021550 ! medulla oblongata development -relationship: results_in_development_of UBERON:0002871 ! hypoglossal nucleus +relationship: RO:0002296 UBERON:0002871 ! results in development of hypoglossal nucleus [Term] id: GO:0021744 @@ -61880,9 +61706,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the dorsal motor nucleus of the vagus nerve over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002870 ! dorsal motor nucleus of vagus nerve +intersection_of: RO:0002296 UBERON:0002870 ! results in development of dorsal motor nucleus of vagus nerve relationship: part_of GO:0021550 ! medulla oblongata development -relationship: results_in_development_of UBERON:0002870 ! dorsal motor nucleus of vagus nerve +relationship: RO:0002296 UBERON:0002870 ! results in development of dorsal motor nucleus of vagus nerve [Term] id: GO:0021745 @@ -61891,9 +61717,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the nucleus ambiguus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001719 ! nucleus ambiguus +intersection_of: RO:0002296 UBERON:0001719 ! results in development of nucleus ambiguus relationship: part_of GO:0021550 ! medulla oblongata development -relationship: results_in_development_of UBERON:0001719 ! nucleus ambiguus +relationship: RO:0002296 UBERON:0001719 ! results in development of nucleus ambiguus [Term] id: GO:0021746 @@ -61902,9 +61728,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the solitary nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0009050 ! nucleus of solitary tract +intersection_of: RO:0002296 UBERON:0009050 ! results in development of nucleus of solitary tract relationship: part_of GO:0021550 ! medulla oblongata development -relationship: results_in_development_of UBERON:0009050 ! nucleus of solitary tract +relationship: RO:0002296 UBERON:0009050 ! results in development of nucleus of solitary tract [Term] id: GO:0021747 @@ -61913,9 +61739,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the cochlear nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001720 ! cochlear nucleus +intersection_of: RO:0002296 UBERON:0001720 ! results in development of cochlear nucleus relationship: part_of GO:0021548 ! pons development -relationship: results_in_development_of UBERON:0001720 ! cochlear nucleus +relationship: RO:0002296 UBERON:0001720 ! results in development of cochlear nucleus [Term] id: GO:0021748 @@ -61924,8 +61750,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the dorsal cochlear nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021747 ! cochlear nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002829 ! dorsal cochlear nucleus -relationship: results_in_development_of UBERON:0002829 ! dorsal cochlear nucleus +intersection_of: RO:0002296 UBERON:0002829 ! results in development of dorsal cochlear nucleus +relationship: RO:0002296 UBERON:0002829 ! results in development of dorsal cochlear nucleus [Term] id: GO:0021749 @@ -61934,8 +61760,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the ventral cochlear nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021747 ! cochlear nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002828 ! ventral cochlear nucleus -relationship: results_in_development_of UBERON:0002828 ! ventral cochlear nucleus +intersection_of: RO:0002296 UBERON:0002828 ! results in development of ventral cochlear nucleus +relationship: RO:0002296 UBERON:0002828 ! results in development of ventral cochlear nucleus [Term] id: GO:0021750 @@ -61944,10 +61770,10 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the vestibular nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid, PMID:16221589] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002673 ! vestibular nuclear complex +intersection_of: RO:0002296 UBERON:0002673 ! results in development of vestibular nuclear complex relationship: part_of GO:0021548 ! pons development relationship: part_of GO:0021550 ! medulla oblongata development -relationship: results_in_development_of UBERON:0002673 ! vestibular nuclear complex +relationship: RO:0002296 UBERON:0002673 ! results in development of vestibular nuclear complex [Term] id: GO:0021751 @@ -61956,9 +61782,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a salivary nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004133 ! salivatory nucleus +intersection_of: RO:0002296 UBERON:0004133 ! results in development of salivatory nucleus relationship: part_of GO:0021548 ! pons development -relationship: results_in_development_of UBERON:0004133 ! salivatory nucleus +relationship: RO:0002296 UBERON:0004133 ! results in development of salivatory nucleus [Term] id: GO:0021752 @@ -61967,8 +61793,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the inferior salivary nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021751 ! salivary nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002872 ! inferior salivatory nucleus -relationship: results_in_development_of UBERON:0002872 ! inferior salivatory nucleus +intersection_of: RO:0002296 UBERON:0002872 ! results in development of inferior salivatory nucleus +relationship: RO:0002296 UBERON:0002872 ! results in development of inferior salivatory nucleus [Term] id: GO:0021753 @@ -61977,8 +61803,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the superior salivary nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021751 ! salivary nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002149 ! superior salivatory nucleus -relationship: results_in_development_of UBERON:0002149 ! superior salivatory nucleus +intersection_of: RO:0002296 UBERON:0002149 ! results in development of superior salivatory nucleus +relationship: RO:0002296 UBERON:0002149 ! results in development of superior salivatory nucleus [Term] id: GO:0021754 @@ -61987,9 +61813,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the facial nucleus over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000127 ! facial nucleus +intersection_of: RO:0002296 UBERON:0000127 ! results in development of facial nucleus relationship: part_of GO:0021548 ! pons development -relationship: results_in_development_of UBERON:0000127 ! facial nucleus +relationship: RO:0002296 UBERON:0000127 ! results in development of facial nucleus [Term] id: GO:0021756 @@ -62000,9 +61826,9 @@ synonym: "neostriatum development" EXACT [] synonym: "striate nucleus development" EXACT [] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002435 ! striatum +intersection_of: RO:0002296 UBERON:0002435 ! results in development of striatum relationship: part_of GO:0021544 ! subpallium development -relationship: results_in_development_of UBERON:0002435 ! striatum +relationship: RO:0002296 UBERON:0002435 ! results in development of striatum [Term] id: GO:0021757 @@ -62011,9 +61837,9 @@ namespace: biological_process def: "The progression of the caudate nucleus over time from its initial formation until its mature state. The caudate nucleus is the C-shaped structures of the striatum containing input neurons involved with control of voluntary movement in the brain." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0878937420] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001873 ! caudate nucleus +intersection_of: RO:0002296 UBERON:0001873 ! results in development of caudate nucleus relationship: part_of GO:0021756 ! striatum development -relationship: results_in_development_of UBERON:0001873 ! caudate nucleus +relationship: RO:0002296 UBERON:0001873 ! results in development of caudate nucleus [Term] id: GO:0021758 @@ -62022,9 +61848,9 @@ namespace: biological_process def: "The progression of the putamen over time from its initial formation until its mature state. The putamen is the lens-shaped basal ganglion involved with control of voluntary movement in the brain." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0878937420] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001874 ! putamen +intersection_of: RO:0002296 UBERON:0001874 ! results in development of putamen relationship: part_of GO:0021756 ! striatum development -relationship: results_in_development_of UBERON:0001874 ! putamen +relationship: RO:0002296 UBERON:0001874 ! results in development of putamen [Term] id: GO:0021759 @@ -62034,9 +61860,9 @@ def: "The progression of the globus pallidus over time from its initial formatio synonym: "pallidum development" EXACT [PMID:16271465] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001875 ! globus pallidus +intersection_of: RO:0002296 UBERON:0001875 ! results in development of globus pallidus relationship: part_of GO:0021536 ! diencephalon development -relationship: results_in_development_of UBERON:0001875 ! globus pallidus +relationship: RO:0002296 UBERON:0001875 ! results in development of globus pallidus [Term] id: GO:0021761 @@ -62045,9 +61871,9 @@ namespace: biological_process def: "The progression of the limbic system over time from its initial formation until its mature state. The limbic system is a collection of structures in the brain involved in emotion, motivation and emotional aspects of memory." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0878937420] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000349 ! limbic system +intersection_of: RO:0002296 UBERON:0000349 ! results in development of limbic system relationship: part_of GO:0030900 ! forebrain development -relationship: results_in_development_of UBERON:0000349 ! limbic system +relationship: RO:0002296 UBERON:0000349 ! results in development of limbic system [Term] id: GO:0021762 @@ -62056,9 +61882,9 @@ namespace: biological_process def: "The progression of the substantia nigra over time from its initial formation until its mature state. The substantia nigra is the layer of gray substance that separates the posterior parts of the cerebral peduncles (tegmentum mesencephali) from the anterior parts; it normally includes a posterior compact part with many pigmented cells (pars compacta) and an anterior reticular part whose cells contain little pigment (pars reticularis)." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343, ISBN:0878937420] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002038 ! substantia nigra +intersection_of: RO:0002296 UBERON:0002038 ! results in development of substantia nigra relationship: part_of GO:0030901 ! midbrain development -relationship: results_in_development_of UBERON:0002038 ! substantia nigra +relationship: RO:0002296 UBERON:0002038 ! results in development of substantia nigra [Term] id: GO:0021763 @@ -62068,9 +61894,9 @@ def: "The progression of the subthalamic nucleus over time from its initial form synonym: "corpus luysi development" RELATED [] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001906 ! subthalamic nucleus +intersection_of: RO:0002296 UBERON:0001906 ! results in development of subthalamic nucleus relationship: part_of GO:0021539 ! subthalamus development -relationship: results_in_development_of UBERON:0001906 ! subthalamic nucleus +relationship: RO:0002296 UBERON:0001906 ! results in development of subthalamic nucleus [Term] id: GO:0021764 @@ -62079,9 +61905,9 @@ namespace: biological_process def: "The progression of the amygdala over time from its initial formation until its mature state. The amygdala is an almond-shaped set of neurons in the medial temporal lobe of the brain that play a key role in processing emotions such as fear and pleasure." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0878937420] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001876 ! amygdala +intersection_of: RO:0002296 UBERON:0001876 ! results in development of amygdala relationship: part_of GO:0021761 ! limbic system development -relationship: results_in_development_of UBERON:0001876 ! amygdala +relationship: RO:0002296 UBERON:0001876 ! results in development of amygdala [Term] id: GO:0021765 @@ -62090,9 +61916,9 @@ namespace: biological_process def: "The progression of the cingulate gyrus over time from its initial formation until its mature state. The cingulate gyrus is a ridge in the cerebral cortex located dorsal to the corpus callosum." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0878937420] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002967 ! cingulate gyrus +intersection_of: RO:0002296 UBERON:0002967 ! results in development of cingulate gyrus relationship: part_of GO:0021761 ! limbic system development -relationship: results_in_development_of UBERON:0002967 ! cingulate gyrus +relationship: RO:0002296 UBERON:0002967 ! results in development of cingulate gyrus [Term] id: GO:0021766 @@ -62102,10 +61928,10 @@ def: "The progression of the hippocampus over time from its initial formation un synonym: "hippocampal formation development" EXACT [ABA:HPF] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002421 ! hippocampal formation +intersection_of: RO:0002296 UBERON:0002421 ! results in development of hippocampal formation relationship: part_of GO:0021543 ! pallium development relationship: part_of GO:0021761 ! limbic system development -relationship: results_in_development_of UBERON:0002421 ! hippocampal formation +relationship: RO:0002296 UBERON:0002421 ! results in development of hippocampal formation [Term] id: GO:0021767 @@ -62114,10 +61940,10 @@ namespace: biological_process def: "The progression of the mammillary body over time from its initial formation until its mature state. The mammillary body is a protrusion at the posterior end of the hypothalamus that contains hypothalamic nuclei." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0878937420] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002206 ! mammillary body +intersection_of: RO:0002296 UBERON:0002206 ! results in development of mammillary body relationship: part_of GO:0021536 ! diencephalon development relationship: part_of GO:0021761 ! limbic system development -relationship: results_in_development_of UBERON:0002206 ! mammillary body +relationship: RO:0002296 UBERON:0002206 ! results in development of mammillary body [Term] id: GO:0021768 @@ -62128,10 +61954,10 @@ synonym: "accumbens nucleus development" EXACT [GOC:dgh] synonym: "ventral striatum development" BROAD [] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001882 ! nucleus accumbens +intersection_of: RO:0002296 UBERON:0001882 ! results in development of nucleus accumbens relationship: part_of GO:0021756 ! striatum development relationship: part_of GO:0021761 ! limbic system development -relationship: results_in_development_of UBERON:0001882 ! nucleus accumbens +relationship: RO:0002296 UBERON:0001882 ! results in development of nucleus accumbens [Term] id: GO:0021769 @@ -62140,9 +61966,9 @@ namespace: biological_process def: "The progression of the orbitofrontal cortex over time from its initial formation until its mature state. The orbitofrontal cortex is a cerebral cortex region located in the frontal lobe." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0878937420] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004167 ! orbitofrontal cortex +intersection_of: RO:0002296 UBERON:0004167 ! results in development of orbitofrontal cortex relationship: part_of GO:0021761 ! limbic system development -relationship: results_in_development_of UBERON:0004167 ! orbitofrontal cortex +relationship: RO:0002296 UBERON:0004167 ! results in development of orbitofrontal cortex [Term] id: GO:0021770 @@ -62153,9 +61979,9 @@ synonym: "hippocampal gyrus development" EXACT [GOC:dgh] xref: Wikipedia:parahippocampal_gyrus is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002973 ! parahippocampal gyrus +intersection_of: RO:0002296 UBERON:0002973 ! results in development of parahippocampal gyrus relationship: part_of GO:0021761 ! limbic system development -relationship: results_in_development_of UBERON:0002973 ! parahippocampal gyrus +relationship: RO:0002296 UBERON:0002973 ! results in development of parahippocampal gyrus [Term] id: GO:0021771 @@ -62165,9 +61991,9 @@ def: "The progression of the lateral geniculate nucleus over time from its initi synonym: "LGN development" EXACT [GOC:dgh] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001926 ! lateral geniculate body +intersection_of: RO:0002296 UBERON:0001926 ! results in development of lateral geniculate body relationship: part_of GO:0021794 ! thalamus development -relationship: results_in_development_of UBERON:0001926 ! lateral geniculate body +relationship: RO:0002296 UBERON:0001926 ! results in development of lateral geniculate body [Term] id: GO:0021772 @@ -62176,9 +62002,9 @@ namespace: biological_process def: "The progression of the olfactory bulb over time from its initial formation until its mature state. The olfactory bulb coordinates neuronal signaling involved in the perception of smell. It receives input from the sensory neurons and outputs to the olfactory cortex." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0878937420] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002264 ! olfactory bulb +intersection_of: RO:0002296 UBERON:0002264 ! results in development of olfactory bulb relationship: part_of GO:0021988 ! olfactory lobe development -relationship: results_in_development_of UBERON:0002264 ! olfactory bulb +relationship: RO:0002296 UBERON:0002264 ! results in development of olfactory bulb [Term] id: GO:0021782 @@ -62187,9 +62013,9 @@ namespace: biological_process def: "The process aimed at the progression of a glial cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000125 ! glial cell +intersection_of: RO:0002296 CL:0000125 ! results in development of glial cell relationship: part_of GO:0010001 ! glial cell differentiation -relationship: results_in_development_of CL:0000125 ! glial cell +relationship: RO:0002296 CL:0000125 ! results in development of glial cell [Term] id: GO:0021783 @@ -62198,10 +62024,10 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a preganglionic parasympathetic fiber over time, from its formation to the mature structure. A preganglionic parasympathetic fiber is a cholinergic axonal fiber projecting from the CNS to a parasympathetic ganglion." [GO_REF:0000021, GOC:cjm, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0011930 ! preganglionic parasympathetic fiber +intersection_of: RO:0002296 UBERON:0011930 ! results in development of preganglionic parasympathetic fiber relationship: part_of GO:0007417 ! central nervous system development relationship: part_of GO:0048486 ! parasympathetic nervous system development -relationship: results_in_development_of UBERON:0011930 ! preganglionic parasympathetic fiber +relationship: RO:0002296 UBERON:0011930 ! results in development of preganglionic parasympathetic fiber [Term] id: GO:0021784 @@ -62210,10 +62036,10 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the postganglionic portion of the parasympathetic fiber over time, from its formation to the mature structure. The parasympathetic fiber is one of the two divisions of the vertebrate autonomic nervous system. Parasympathetic nerves emerge cranially as pre ganglionic fibers from oculomotor, facial, glossopharyngeal and vagus and from the sacral region of the spinal cord. Most neurons are cholinergic and responses are mediated by muscarinic receptors. The parasympathetic system innervates, for example: salivary glands, thoracic and abdominal viscera, bladder and genitalia." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048483 ! autonomic nervous system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0011929 ! postganglionic parasympathetic fiber +intersection_of: RO:0002296 UBERON:0011929 ! results in development of postganglionic parasympathetic fiber relationship: part_of GO:0007422 ! peripheral nervous system development relationship: part_of GO:0048486 ! parasympathetic nervous system development -relationship: results_in_development_of UBERON:0011929 ! postganglionic parasympathetic fiber +relationship: RO:0002296 UBERON:0011929 ! results in development of postganglionic parasympathetic fiber [Term] id: GO:0021794 @@ -62222,9 +62048,9 @@ namespace: biological_process def: "The process in which the thalamus changes over time, from its initial formation to its mature state." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001897 ! dorsal plus ventral thalamus +intersection_of: RO:0002296 UBERON:0001897 ! results in development of dorsal plus ventral thalamus relationship: part_of GO:0021536 ! diencephalon development -relationship: results_in_development_of UBERON:0001897 ! dorsal plus ventral thalamus +relationship: RO:0002296 UBERON:0001897 ! results in development of dorsal plus ventral thalamus [Term] id: GO:0021795 @@ -62251,7 +62077,7 @@ synonym: "cerebral cortex radial glia-dependent cell migration" EXACT [] synonym: "glial-guided locomotion" RELATED [PMID:12626695] is_a: GO:0021799 ! cerebral cortex radially oriented cell migration is_a: GO:0022030 ! telencephalon glial cell migration -relationship: results_in_movement_of CL:0000125 ! glial cell +relationship: RO:0002565 CL:0000125 ! results in movement of glial cell [Term] id: GO:0021814 @@ -62299,10 +62125,10 @@ synonym: "negative regulation of cell locomotion involved in cerebral cortex gli synonym: "negative regulation of cell locomotion involved in cerebral cortex radial glia guided migration" RELATED [GOC:dph, GOC:tb] is_a: GO:1903976 ! negative regulation of glial cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0021814 ! cell motility involved in cerebral cortex radial glia guided migration -relationship: negatively_regulates GO:0008347 ! glial cell migration -relationship: negatively_regulates GO:0021814 ! cell motility involved in cerebral cortex radial glia guided migration +intersection_of: RO:0002212 GO:0021814 ! negatively regulates cell motility involved in cerebral cortex radial glia guided migration relationship: part_of GO:0021819 ! layer formation in cerebral cortex +relationship: RO:0002212 GO:0008347 ! negatively regulates glial cell migration +relationship: RO:0002212 GO:0021814 ! negatively regulates cell motility involved in cerebral cortex radial glia guided migration [Term] id: GO:0021826 @@ -62332,8 +62158,8 @@ namespace: biological_process def: "The creation of greater cell numbers in the forebrain due to cell division of progenitor cells." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0061351 ! neural precursor cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: occurs_in UBERON:0001890 ! forebrain -relationship: occurs_in UBERON:0001890 ! forebrain +intersection_of: BFO:0000066 UBERON:0001890 ! occurs in forebrain +relationship: BFO:0000066 UBERON:0001890 ! occurs in forebrain relationship: part_of GO:0030900 ! forebrain development [Term] @@ -62344,8 +62170,8 @@ def: "The division of neuroblasts in the subpallium area of the forebrain. The i synonym: "neuroblast division in the ventral telencephalon" EXACT [PMID:16226447] is_a: GO:0055057 ! neuroblast division intersection_of: GO:0055057 ! neuroblast division -intersection_of: occurs_in UBERON:0000204 ! ventral part of telencephalon -relationship: occurs_in UBERON:0000204 ! ventral part of telencephalon +intersection_of: BFO:0000066 UBERON:0000204 ! occurs in ventral part of telencephalon +relationship: BFO:0000066 UBERON:0000204 ! occurs in ventral part of telencephalon relationship: part_of GO:0022012 ! subpallium cell proliferation in forebrain [Term] @@ -62355,8 +62181,8 @@ namespace: biological_process def: "The division of neuroblasts in the subventricular zone of the forebrain. The interneuron precursors that these cells give rise to include adult olfactory bulb interneurons and migrate tangentially." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, PMID:12626695] is_a: GO:0055057 ! neuroblast division intersection_of: GO:0055057 ! neuroblast division -intersection_of: occurs_in UBERON:0004922 ! postnatal subventricular zone -relationship: occurs_in UBERON:0004922 ! postnatal subventricular zone +intersection_of: BFO:0000066 UBERON:0004922 ! occurs in postnatal subventricular zone +relationship: BFO:0000066 UBERON:0004922 ! occurs in postnatal subventricular zone relationship: part_of GO:0021846 ! cell proliferation in forebrain [Term] @@ -62369,11 +62195,11 @@ synonym: "pyramidal neuron migration" BROAD [] is_a: GO:0021801 ! cerebral cortex radial glia-guided migration is_a: GO:0140650 ! radial glia-guided pyramidal neuron migration intersection_of: GO:0016477 ! cell migration -intersection_of: has_target_end_location UBERON:0000956 ! cerebral cortex -intersection_of: results_in_movement_of CL:0000598 ! pyramidal neuron -relationship: has_target_end_location UBERON:0000956 ! cerebral cortex +intersection_of: RO:0002339 UBERON:0000956 ! has target end location cerebral cortex +intersection_of: RO:0002565 CL:0000598 ! results in movement of pyramidal neuron relationship: part_of GO:0021860 ! pyramidal neuron development -relationship: results_in_movement_of CL:0000598 ! pyramidal neuron +relationship: RO:0002339 UBERON:0000956 ! has target end location cerebral cortex +relationship: RO:0002565 CL:0000598 ! results in movement of pyramidal neuron property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/21476" xsd:anyURI [Term] @@ -62384,9 +62210,9 @@ def: "The migration of GABAergic interneuron precursors from the subpallium to t is_a: GO:0021830 ! interneuron migration from the subpallium to the cortex is_a: GO:1904936 ! interneuron migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0010011 ! cerebral cortex GABAergic interneuron +intersection_of: RO:0002565 CL:0010011 ! results in movement of cerebral cortex GABAergic interneuron relationship: part_of GO:0021894 ! cerebral cortex GABAergic interneuron development -relationship: results_in_movement_of CL:0010011 ! cerebral cortex GABAergic interneuron +relationship: RO:0002565 CL:0010011 ! results in movement of cerebral cortex GABAergic interneuron [Term] id: GO:0021854 @@ -62395,10 +62221,10 @@ namespace: biological_process def: "The progression of the hypothalamus region of the forebrain, from its initial formation to its mature state." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001898 ! hypothalamus +intersection_of: RO:0002296 UBERON:0001898 ! results in development of hypothalamus relationship: part_of GO:0021536 ! diencephalon development relationship: part_of GO:0021761 ! limbic system development -relationship: results_in_development_of UBERON:0001898 ! hypothalamus +relationship: RO:0002296 UBERON:0001898 ! results in development of hypothalamus [Term] id: GO:0021859 @@ -62408,8 +62234,8 @@ def: "The process in which a neuroblast or one of its progeny commits to a pyram synonym: "projection neuron differentiation" BROAD [PMID:16226447] is_a: GO:0030182 ! neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000598 ! pyramidal neuron -relationship: results_in_acquisition_of_features_of CL:0000598 ! pyramidal neuron +intersection_of: RO:0002315 CL:0000598 ! results in acquisition of features of pyramidal neuron +relationship: RO:0002315 CL:0000598 ! results in acquisition of features of pyramidal neuron [Term] id: GO:0021860 @@ -62419,9 +62245,9 @@ def: "The progression of a pyramidal neuron from its initial formation to its ma synonym: "projection neuron development" BROAD [PMID:16226447] is_a: GO:0021884 ! forebrain neuron development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000598 ! pyramidal neuron +intersection_of: RO:0002296 CL:0000598 ! results in development of pyramidal neuron relationship: part_of GO:0021859 ! pyramidal neuron differentiation -relationship: results_in_development_of CL:0000598 ! pyramidal neuron +relationship: RO:0002296 CL:0000598 ! results in development of pyramidal neuron [Term] id: GO:0021861 @@ -62431,9 +62257,9 @@ def: "The process in which neuroepithelial cells of the neural tube give rise to synonym: "radial glial cell differentiation in forebrain" EXACT [] is_a: GO:0060019 ! radial glial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0013000 ! forebrain radial glial cell +intersection_of: RO:0002315 CL:0013000 ! results in acquisition of features of forebrain radial glial cell relationship: part_of GO:0021872 ! forebrain generation of neurons -relationship: results_in_acquisition_of_features_of CL:0013000 ! forebrain radial glial cell +relationship: RO:0002315 CL:0013000 ! results in acquisition of features of forebrain radial glial cell [Term] id: GO:0021863 @@ -62445,9 +62271,9 @@ synonym: "intermediate progenitor cell differentiation" EXACT [PMID:16226447] synonym: "non-surface dividing progenitor cell differentiation" EXACT [PMID:16226447] is_a: GO:0014016 ! neuroblast differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000042 ! forebrain neuroblast +intersection_of: RO:0002315 CL:1000042 ! results in acquisition of features of forebrain neuroblast relationship: part_of GO:0021872 ! forebrain generation of neurons -relationship: results_in_acquisition_of_features_of CL:1000042 ! forebrain neuroblast +relationship: RO:0002315 CL:1000042 ! results in acquisition of features of forebrain neuroblast [Term] id: GO:0021872 @@ -62465,9 +62291,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a neuron that will reside in the forebrain." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, PMID:16226447] is_a: GO:0021953 ! central nervous system neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0012001 ! neuron of the forebrain +intersection_of: RO:0002315 CL:0012001 ! results in acquisition of features of neuron of the forebrain relationship: part_of GO:0021872 ! forebrain generation of neurons -relationship: results_in_acquisition_of_features_of CL:0012001 ! neuron of the forebrain +relationship: RO:0002315 CL:0012001 ! results in acquisition of features of neuron of the forebrain [Term] id: GO:0021884 @@ -62476,9 +62302,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a neuron that resides in the forebrain, from its initial commitment to its fate, to the fully functional differentiated cell." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021954 ! central nervous system neuron development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:0012001 ! neuron of the forebrain +intersection_of: RO:0002296 CL:0012001 ! results in development of neuron of the forebrain relationship: part_of GO:0021879 ! forebrain neuron differentiation -relationship: results_in_development_of CL:0012001 ! neuron of the forebrain +relationship: RO:0002296 CL:0012001 ! results in development of neuron of the forebrain [Term] id: GO:0021885 @@ -62495,9 +62321,9 @@ namespace: biological_process def: "The process in which a neuroblast acquires specialized features of an interneuron residing in the olfactory bulb." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, PMID:12626695] is_a: GO:0021953 ! central nervous system neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1001434 ! olfactory bulb interneuron +intersection_of: RO:0002315 CL:1001434 ! results in acquisition of features of olfactory bulb interneuron relationship: part_of GO:0021772 ! olfactory bulb development -relationship: results_in_acquisition_of_features_of CL:1001434 ! olfactory bulb interneuron +relationship: RO:0002315 CL:1001434 ! results in acquisition of features of olfactory bulb interneuron [Term] id: GO:0021891 @@ -62506,9 +62332,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of an interneuron residing in the olfactory bulb, from its initial commitment, to the fully functional differentiated cell." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, PMID:12626695] is_a: GO:0021954 ! central nervous system neuron development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:1001434 ! olfactory bulb interneuron +intersection_of: RO:0002296 CL:1001434 ! results in development of olfactory bulb interneuron relationship: part_of GO:0021889 ! olfactory bulb interneuron differentiation -relationship: results_in_development_of CL:1001434 ! olfactory bulb interneuron +relationship: RO:0002296 CL:1001434 ! results in development of olfactory bulb interneuron [Term] id: GO:0021892 @@ -62518,8 +62344,8 @@ def: "The process in which a relatively unspecialized cell acquires specialized is_a: GO:0021895 ! cerebral cortex neuron differentiation is_a: GO:0097154 ! GABAergic neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0010011 ! cerebral cortex GABAergic interneuron -relationship: results_in_acquisition_of_features_of CL:0010011 ! cerebral cortex GABAergic interneuron +intersection_of: RO:0002315 CL:0010011 ! results in acquisition of features of cerebral cortex GABAergic interneuron +relationship: RO:0002315 CL:0010011 ! results in acquisition of features of cerebral cortex GABAergic interneuron [Term] id: GO:0021894 @@ -62528,9 +62354,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a cerebral cortex GABAergic interneuron over time, from initial commitment to its fate, to the fully functional differentiated cell." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, PMID:12626695] is_a: GO:0021954 ! central nervous system neuron development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0010011 ! cerebral cortex GABAergic interneuron +intersection_of: RO:0002296 CL:0010011 ! results in development of cerebral cortex GABAergic interneuron relationship: part_of GO:0021892 ! cerebral cortex GABAergic interneuron differentiation -relationship: results_in_development_of CL:0010011 ! cerebral cortex GABAergic interneuron +relationship: RO:0002296 CL:0010011 ! results in development of cerebral cortex GABAergic interneuron [Term] id: GO:0021895 @@ -62539,9 +62365,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a neuron residing in the cerebral cortex." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021953 ! central nervous system neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0010012 ! cerebral cortex neuron +intersection_of: RO:0002315 CL:0010012 ! results in acquisition of features of cerebral cortex neuron relationship: part_of GO:0030900 ! forebrain development -relationship: results_in_acquisition_of_features_of CL:0010012 ! cerebral cortex neuron +relationship: RO:0002315 CL:0010012 ! results in acquisition of features of cerebral cortex neuron [Term] id: GO:0021896 @@ -62550,9 +62376,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized features of an astrocyte residing in the forebrain. An astrocyte is the most abundant type of glial cell. Astrocytes provide support for neurons and regulate the environment in which they function." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, PMID:16226447] is_a: GO:0048708 ! astrocyte differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0012000 ! astrocyte of the forebrain +intersection_of: RO:0002315 CL:0012000 ! results in acquisition of features of astrocyte of the forebrain relationship: part_of GO:0030900 ! forebrain development -relationship: results_in_acquisition_of_features_of CL:0012000 ! astrocyte of the forebrain +relationship: RO:0002315 CL:0012000 ! results in acquisition of features of astrocyte of the forebrain [Term] id: GO:0021897 @@ -62561,9 +62387,9 @@ namespace: biological_process def: "The process aimed at the progression of an astrocyte that resides in the forebrain, from initial commitment of the cell to its fate, to the fully functional differentiated cell. An astrocyte is the most abundant type of glial cell. Astrocytes provide support for neurons and regulate the environment in which they function." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0014002 ! astrocyte development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:0012000 ! astrocyte of the forebrain +intersection_of: RO:0002296 CL:0012000 ! results in development of astrocyte of the forebrain relationship: part_of GO:0021896 ! forebrain astrocyte differentiation -relationship: results_in_development_of CL:0012000 ! astrocyte of the forebrain +relationship: RO:0002296 CL:0012000 ! results in development of astrocyte of the forebrain [Term] id: GO:0021903 @@ -62582,9 +62408,9 @@ def: "The process whose specific outcome is the creation of the forebrain-midbra is_a: GO:0048856 ! anatomical structure development is_a: GO:0048859 ! formation of anatomical boundary intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005075 ! forebrain-midbrain boundary +intersection_of: RO:0002297 UBERON:0005075 ! results in formation of anatomical entity forebrain-midbrain boundary relationship: part_of GO:0021903 ! rostrocaudal neural tube patterning -relationship: results_in_formation_of_anatomical_entity UBERON:0005075 ! forebrain-midbrain boundary +relationship: RO:0002297 UBERON:0005075 ! results in formation of anatomical entity forebrain-midbrain boundary [Term] id: GO:0021906 @@ -62593,9 +62419,9 @@ namespace: biological_process def: "The process whose specific outcome is the formation of the hindbrain-spinal cord boundary." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, PMID:11262869] is_a: GO:0048859 ! formation of anatomical boundary intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005076 ! hindbrain-spinal cord boundary +intersection_of: RO:0002297 UBERON:0005076 ! results in formation of anatomical entity hindbrain-spinal cord boundary relationship: part_of GO:0021903 ! rostrocaudal neural tube patterning -relationship: results_in_formation_of_anatomical_entity UBERON:0005076 ! hindbrain-spinal cord boundary +relationship: RO:0002297 UBERON:0005076 ! results in formation of anatomical entity hindbrain-spinal cord boundary [Term] id: GO:0021915 @@ -62605,10 +62431,10 @@ def: "The process whose specific outcome is the progression of the neural tube o is_a: GO:0035295 ! tube development is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001049 ! neural tube +intersection_of: RO:0002296 UBERON:0001049 ! results in development of neural tube relationship: part_of GO:0007399 ! nervous system development relationship: part_of GO:0043009 ! chordate embryonic development -relationship: results_in_development_of UBERON:0001049 ! neural tube +relationship: RO:0002296 UBERON:0001049 ! results in development of neural tube [Term] id: GO:0021921 @@ -62617,9 +62443,9 @@ namespace: biological_process def: "The process that modulates the frequency, rate or extent of cell proliferation in the dorsal spinal cord." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:2000177 ! regulation of neural precursor cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0010456 ! cell proliferation in dorsal spinal cord +intersection_of: RO:0002211 GO:0010456 ! regulates (processual) cell proliferation in dorsal spinal cord relationship: part_of GO:0021516 ! dorsal spinal cord development -relationship: regulates GO:0010456 ! cell proliferation in dorsal spinal cord +relationship: RO:0002211 GO:0010456 ! regulates (processual) cell proliferation in dorsal spinal cord [Term] id: GO:0021952 @@ -62636,9 +62462,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the central nervous system." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0030182 ! neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:2000029 ! central nervous system neuron +intersection_of: RO:0002315 CL:2000029 ! results in acquisition of features of central nervous system neuron relationship: part_of GO:0007417 ! central nervous system development -relationship: results_in_acquisition_of_features_of CL:2000029 ! central nervous system neuron +relationship: RO:0002315 CL:2000029 ! results in acquisition of features of central nervous system neuron [Term] id: GO:0021954 @@ -62647,9 +62473,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a neuron whose cell body is located in the central nervous system, from initial commitment of the cell to a neuronal fate, to the fully functional differentiated neuron." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048666 ! neuron development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:2000029 ! central nervous system neuron +intersection_of: RO:0002296 CL:2000029 ! results in development of central nervous system neuron relationship: part_of GO:0021953 ! central nervous system neuron differentiation -relationship: results_in_development_of CL:2000029 ! central nervous system neuron +relationship: RO:0002296 CL:2000029 ! results in development of central nervous system neuron [Term] id: GO:0021955 @@ -62668,8 +62494,8 @@ synonym: "corticospinal tract axonogenesis" EXACT [GOC:dph, PMID:9878731] synonym: "CST axonogenesis" EXACT [GOC:dph, PMID:9878731] is_a: GO:0021952 ! central nervous system projection neuron axonogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002707 ! corticospinal tract -relationship: results_in_morphogenesis_of UBERON:0002707 ! corticospinal tract +intersection_of: RO:0002298 UBERON:0002707 ! results in morphogenesis of corticospinal tract +relationship: RO:0002298 UBERON:0002707 ! results in morphogenesis of corticospinal tract [Term] id: GO:0021958 @@ -62679,8 +62505,8 @@ def: "Generation of a long process of a CNS neuron, that carries efferent (outgo synonym: "tract of Goll morphogenesis" EXACT [PMID:12867698] is_a: GO:0021952 ! central nervous system projection neuron axonogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005821 ! gracile fasciculus -relationship: results_in_morphogenesis_of UBERON:0005821 ! gracile fasciculus +intersection_of: RO:0002298 UBERON:0005821 ! results in morphogenesis of gracile fasciculus +relationship: RO:0002298 UBERON:0005821 ! results in morphogenesis of gracile fasciculus [Term] id: GO:0021959 @@ -62690,8 +62516,8 @@ def: "Generation of a long process of a CNS neuron, that carries efferent (outgo synonym: "tract of Burdach morphogenesis" EXACT [PMID:12867698] is_a: GO:0021952 ! central nervous system projection neuron axonogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005832 ! cuneate fasciculus -relationship: results_in_morphogenesis_of UBERON:0005832 ! cuneate fasciculus +intersection_of: RO:0002298 UBERON:0005832 ! results in morphogenesis of cuneate fasciculus +relationship: RO:0002298 UBERON:0005832 ! results in morphogenesis of cuneate fasciculus [Term] id: GO:0021960 @@ -62700,9 +62526,9 @@ namespace: biological_process def: "Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in one half of the cerebral cortex towards target cells in the contralateral half. This axonal process is a member of those that make up the anterior commissure, a small midline fiber tract that lies at the anterior end of the corpus callosum." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0878937420] is_a: GO:0021952 ! central nervous system projection neuron axonogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000935 ! anterior commissure +intersection_of: RO:0002298 UBERON:0000935 ! results in morphogenesis of anterior commissure relationship: part_of GO:0021537 ! telencephalon development -relationship: results_in_morphogenesis_of UBERON:0000935 ! anterior commissure +relationship: RO:0002298 UBERON:0000935 ! results in morphogenesis of anterior commissure [Term] id: GO:0021961 @@ -62711,8 +62537,8 @@ namespace: biological_process def: "Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the midbrain towards target cells in the diencephalon." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021952 ! central nervous system projection neuron axonogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000936 ! posterior commissure -relationship: results_in_morphogenesis_of UBERON:0000936 ! posterior commissure +intersection_of: RO:0002298 UBERON:0000936 ! results in morphogenesis of posterior commissure +relationship: RO:0002298 UBERON:0000936 ! results in morphogenesis of posterior commissure [Term] id: GO:0021962 @@ -62721,8 +62547,8 @@ namespace: biological_process def: "Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the vestibular nucleus of the pons towards target cells in the spinal cord." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021952 ! central nervous system projection neuron axonogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002768 ! vestibulospinal tract -relationship: results_in_morphogenesis_of UBERON:0002768 ! vestibulospinal tract +intersection_of: RO:0002298 UBERON:0002768 ! results in morphogenesis of vestibulospinal tract +relationship: RO:0002298 UBERON:0002768 ! results in morphogenesis of vestibulospinal tract [Term] id: GO:0021963 @@ -62732,8 +62558,8 @@ def: "Generation of a long process of a CNS neuron, that carries efferent (outgo synonym: "dorsolateral tract of Lissauer morphogenesis" EXACT [] is_a: GO:0021952 ! central nervous system projection neuron axonogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002944 ! spinothalamic tract of medulla -relationship: results_in_morphogenesis_of UBERON:0002944 ! spinothalamic tract of medulla +intersection_of: RO:0002298 UBERON:0002944 ! results in morphogenesis of spinothalamic tract of medulla +relationship: RO:0002298 UBERON:0002944 ! results in morphogenesis of spinothalamic tract of medulla [Term] id: GO:0021964 @@ -62742,8 +62568,8 @@ namespace: biological_process def: "Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the red nucleus of the midbrain towards target cells in the spinal cord." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021952 ! central nervous system projection neuron axonogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002714 ! rubrospinal tract -relationship: results_in_morphogenesis_of UBERON:0002714 ! rubrospinal tract +intersection_of: RO:0002298 UBERON:0002714 ! results in morphogenesis of rubrospinal tract +relationship: RO:0002298 UBERON:0002714 ! results in morphogenesis of rubrospinal tract [Term] id: GO:0021965 @@ -62752,9 +62578,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the spinal cord ventral commissure are generated and organized." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021952 ! central nervous system projection neuron axonogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004170 ! spinal cord ventral commissure +intersection_of: RO:0002298 UBERON:0004170 ! results in morphogenesis of spinal cord ventral commissure relationship: part_of GO:0021510 ! spinal cord development -relationship: results_in_morphogenesis_of UBERON:0004170 ! spinal cord ventral commissure +relationship: RO:0002298 UBERON:0004170 ! results in morphogenesis of spinal cord ventral commissure [Term] id: GO:0021974 @@ -62763,8 +62589,8 @@ namespace: biological_process def: "Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in spinal cord towards target cells in the thalamus. This axonal process is a member of those that make up the trigeminothalamic tract, one of the major routes of nociceptive and temperature signaling from the face." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0878937420] is_a: GO:0021952 ! central nervous system projection neuron axonogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004171 ! trigeminothalamic tract -relationship: results_in_morphogenesis_of UBERON:0004171 ! trigeminothalamic tract +intersection_of: RO:0002298 UBERON:0004171 ! results in morphogenesis of trigeminothalamic tract +relationship: RO:0002298 UBERON:0004171 ! results in morphogenesis of trigeminothalamic tract [Term] id: GO:0021975 @@ -62773,8 +62599,8 @@ namespace: biological_process def: "Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the pons towards target cells in the spinal cord." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021952 ! central nervous system projection neuron axonogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004172 ! pons reticulospinal tract -relationship: results_in_morphogenesis_of UBERON:0004172 ! pons reticulospinal tract +intersection_of: RO:0002298 UBERON:0004172 ! results in morphogenesis of pons reticulospinal tract +relationship: RO:0002298 UBERON:0004172 ! results in morphogenesis of pons reticulospinal tract [Term] id: GO:0021976 @@ -62783,8 +62609,8 @@ namespace: biological_process def: "Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the medulla towards target cells in the spinal cord." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021952 ! central nervous system projection neuron axonogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004173 ! medulla reticulospinal tract -relationship: results_in_morphogenesis_of UBERON:0004173 ! medulla reticulospinal tract +intersection_of: RO:0002298 UBERON:0004173 ! results in morphogenesis of medulla reticulospinal tract +relationship: RO:0002298 UBERON:0004173 ! results in morphogenesis of medulla reticulospinal tract [Term] id: GO:0021977 @@ -62793,8 +62619,8 @@ namespace: biological_process def: "Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the superior colliculus of the midbrain towards target cells in the ventral spinal cord." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021952 ! central nervous system projection neuron axonogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002949 ! tectospinal tract -relationship: results_in_morphogenesis_of UBERON:0002949 ! tectospinal tract +intersection_of: RO:0002298 UBERON:0002949 ! results in morphogenesis of tectospinal tract +relationship: RO:0002298 UBERON:0002949 ! results in morphogenesis of tectospinal tract [Term] id: GO:0021982 @@ -62804,10 +62630,10 @@ def: "The progression of the pineal gland over time from its initial formation u synonym: "epiphysis development" EXACT [GOC:dph] is_a: GO:0048732 ! gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001905 ! pineal body +intersection_of: RO:0002296 UBERON:0001905 ! results in development of pineal body relationship: part_of GO:0021536 ! diencephalon development relationship: part_of GO:0035270 ! endocrine system development -relationship: results_in_development_of UBERON:0001905 ! pineal body +relationship: RO:0002296 UBERON:0001905 ! results in development of pineal body [Term] id: GO:0021983 @@ -62817,10 +62643,10 @@ def: "The progression of the pituitary gland over time from its initial formatio synonym: "hypophysis development" RELATED [GOC:dph] is_a: GO:0048732 ! gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000007 ! pituitary gland +intersection_of: RO:0002296 UBERON:0000007 ! results in development of pituitary gland relationship: part_of GO:0021536 ! diencephalon development relationship: part_of GO:0035270 ! endocrine system development -relationship: results_in_development_of UBERON:0000007 ! pituitary gland +relationship: RO:0002296 UBERON:0000007 ! results in development of pituitary gland [Term] id: GO:0021984 @@ -62832,9 +62658,9 @@ synonym: "anterior pituitary development" EXACT [] synonym: "anterior pituitary gland development" EXACT [] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002196 ! adenohypophysis +intersection_of: RO:0002296 UBERON:0002196 ! results in development of adenohypophysis relationship: part_of GO:0021983 ! pituitary gland development -relationship: results_in_development_of UBERON:0002196 ! adenohypophysis +relationship: RO:0002296 UBERON:0002196 ! results in development of adenohypophysis [Term] id: GO:0021985 @@ -62846,9 +62672,9 @@ synonym: "posterior pituitary development" EXACT [] synonym: "posterior pituitary gland development" EXACT [] is_a: GO:0048732 ! gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002198 ! neurohypophysis +intersection_of: RO:0002296 UBERON:0002198 ! results in development of neurohypophysis relationship: part_of GO:0021983 ! pituitary gland development -relationship: results_in_development_of UBERON:0002198 ! neurohypophysis +relationship: RO:0002296 UBERON:0002198 ! results in development of neurohypophysis [Term] id: GO:0021986 @@ -62857,9 +62683,9 @@ namespace: biological_process def: "The progression of the habenula over time from its initial formation until its mature state. The habenula is the group of nuclei that makes up the stalk of the pineal gland." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:9780721601465] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001904 ! habenula +intersection_of: RO:0002296 UBERON:0001904 ! results in development of habenula relationship: part_of GO:0021538 ! epithalamus development -relationship: results_in_development_of UBERON:0001904 ! habenula +relationship: RO:0002296 UBERON:0001904 ! results in development of habenula [Term] id: GO:0021987 @@ -62870,9 +62696,9 @@ synonym: "corticogenesis" NARROW [GOC:bf, PMID:25904839] synonym: "neocortex development" RELATED [GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000956 ! cerebral cortex +intersection_of: RO:0002296 UBERON:0000956 ! results in development of cerebral cortex relationship: part_of GO:0021543 ! pallium development -relationship: results_in_development_of UBERON:0000956 ! cerebral cortex +relationship: RO:0002296 UBERON:0000956 ! results in development of cerebral cortex [Term] id: GO:0021988 @@ -62881,9 +62707,9 @@ namespace: biological_process def: "The progression of the olfactory lobe over time from its initial formation until its mature state. The olfactory lobe is the area of the brain that process the neural inputs for the sense of smell." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005366 ! olfactory lobe +intersection_of: RO:0002296 UBERON:0005366 ! results in development of olfactory lobe relationship: part_of GO:0021537 ! telencephalon development -relationship: results_in_development_of UBERON:0005366 ! olfactory lobe +relationship: RO:0002296 UBERON:0005366 ! results in development of olfactory lobe [Term] id: GO:0021989 @@ -62892,9 +62718,9 @@ namespace: biological_process def: "The progression of the olfactory cortex over time from its initial formation until its mature state. The olfactory cortex is involved in the perception of smell. It receives input from the olfactory bulb and is responsible for the identification of odors." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002894 ! olfactory cortex +intersection_of: RO:0002296 UBERON:0002894 ! results in development of olfactory cortex relationship: part_of GO:0021988 ! olfactory lobe development -relationship: results_in_development_of UBERON:0002894 ! olfactory cortex +relationship: RO:0002296 UBERON:0002894 ! results in development of olfactory cortex [Term] id: GO:0021990 @@ -62903,9 +62729,9 @@ namespace: biological_process def: "The formation of the flat, thickened layer of ectodermal cells known as the neural plate. The underlying dorsal mesoderm signals the ectodermal cells above it to elongate into columnar neural plate cells. The neural plate subsequently develops into the neural tube, which gives rise to the central nervous system." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0878932437, ISBN:0878932585, PMID:15806586] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003075 ! neural plate +intersection_of: RO:0002297 UBERON:0003075 ! results in formation of anatomical entity neural plate relationship: part_of GO:0001839 ! neural plate morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0003075 ! neural plate +relationship: RO:0002297 UBERON:0003075 ! results in formation of anatomical entity neural plate [Term] id: GO:0021995 @@ -62922,9 +62748,9 @@ namespace: biological_process def: "The process in which the anterior-most portion of the neural axis is formed by closure of the anterior neuropore." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005078 ! lamina terminalis of neural tube +intersection_of: RO:0002297 UBERON:0005078 ! results in formation of anatomical entity lamina terminalis of neural tube relationship: part_of GO:0021506 ! anterior neuropore closure -relationship: results_in_formation_of_anatomical_entity UBERON:0005078 ! lamina terminalis of neural tube +relationship: RO:0002297 UBERON:0005078 ! results in formation of anatomical entity lamina terminalis of neural tube [Term] id: GO:0021999 @@ -62944,9 +62770,9 @@ synonym: "zli biosynthesis" EXACT [] synonym: "zli formation" EXACT [] is_a: GO:0048859 ! formation of anatomical boundary intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0009848 ! zona limitans intrathalamica +intersection_of: RO:0002297 UBERON:0009848 ! results in formation of anatomical entity zona limitans intrathalamica relationship: part_of GO:0021903 ! rostrocaudal neural tube patterning -relationship: results_in_formation_of_anatomical_entity UBERON:0009848 ! zona limitans intrathalamica +relationship: RO:0002297 UBERON:0009848 ! results in formation of anatomical entity zona limitans intrathalamica [Term] id: GO:0022008 @@ -62966,8 +62792,8 @@ namespace: biological_process def: "The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes in the central nervous system. The capillary endothelial cells in the brain are specialized to form the blood-brain barrier." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0001570 ! vasculogenesis intersection_of: GO:0001570 ! vasculogenesis -intersection_of: results_in_maturation_of UBERON:0001017 ! central nervous system -relationship: results_in_maturation_of UBERON:0001017 ! central nervous system +intersection_of: RO:0002299 UBERON:0001017 ! results in maturation of central nervous system +relationship: RO:0002299 UBERON:0001017 ! results in maturation of central nervous system property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/21480" xsd:anyURI [Term] @@ -62979,11 +62805,11 @@ synonym: "myelination in central nervous system" EXACT [] is_a: GO:0032291 ! axon ensheathment in central nervous system is_a: GO:0042552 ! myelination intersection_of: GO:0042552 ! myelination -intersection_of: occurs_in UBERON:0001017 ! central nervous system +intersection_of: BFO:0000066 UBERON:0001017 ! occurs in central nervous system +relationship: BFO:0000066 UBERON:0001017 ! occurs in central nervous system relationship: in_taxon NCBITaxon:33213 {all_only="true"} ! Bilateria -relationship: occurs_in UBERON:0001017 ! central nervous system -relationship: only_in_taxon NCBITaxon:33213 ! Bilateria relationship: part_of GO:0014003 ! oligodendrocyte development +relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria [Term] id: GO:0022011 @@ -62994,8 +62820,8 @@ synonym: "peripheral nervous system myelination" EXACT [] is_a: GO:0032292 ! peripheral nervous system axon ensheathment is_a: GO:0042552 ! myelination intersection_of: GO:0042552 ! myelination -intersection_of: occurs_in UBERON:0000010 ! peripheral nervous system -relationship: occurs_in UBERON:0000010 ! peripheral nervous system +intersection_of: BFO:0000066 UBERON:0000010 ! occurs in peripheral nervous system +relationship: BFO:0000066 UBERON:0000010 ! occurs in peripheral nervous system relationship: part_of GO:0014044 ! Schwann cell development [Term] @@ -63014,13 +62840,13 @@ def: "The migration of cells in the telencephalon from the subventricular zone t synonym: "rostral migratory stream migration" EXACT [] is_a: GO:0022029 ! telencephalon cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: has_target_end_location UBERON:0002264 ! olfactory bulb -intersection_of: has_target_start_location UBERON:0004922 ! postnatal subventricular zone -intersection_of: results_in_transport_along UBERON:0008881 ! rostral migratory stream -relationship: has_target_end_location UBERON:0002264 ! olfactory bulb -relationship: has_target_start_location UBERON:0004922 ! postnatal subventricular zone +intersection_of: RO:0002338 UBERON:0004922 ! has target start location postnatal subventricular zone +intersection_of: RO:0002339 UBERON:0002264 ! has target end location olfactory bulb +intersection_of: RO:0002341 UBERON:0008881 ! results in transport along rostral migratory stream relationship: part_of GO:0021772 ! olfactory bulb development -relationship: results_in_transport_along UBERON:0008881 ! rostral migratory stream +relationship: RO:0002338 UBERON:0004922 ! has target start location postnatal subventricular zone +relationship: RO:0002339 UBERON:0002264 ! has target end location olfactory bulb +relationship: RO:0002341 UBERON:0008881 ! results in transport along rostral migratory stream [Term] id: GO:0022029 @@ -63029,9 +62855,9 @@ namespace: biological_process def: "The orderly movement of a cell from one site to another at least one of which is located in the telencephalon." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0021885 ! forebrain cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_transport_to_from_or_in UBERON:0001893 ! telencephalon +intersection_of: RO:0002344 UBERON:0001893 ! results in transport to from or in telencephalon relationship: part_of GO:0021537 ! telencephalon development -relationship: results_in_transport_to_from_or_in UBERON:0001893 ! telencephalon +relationship: RO:0002344 UBERON:0001893 ! results in transport to from or in telencephalon [Term] id: GO:0022030 @@ -63041,8 +62867,8 @@ def: "The orderly movement of glial cells through the telencephalon." [GO_REF:00 is_a: GO:0008347 ! glial cell migration is_a: GO:0022029 ! telencephalon cell migration intersection_of: GO:0008347 ! glial cell migration -intersection_of: results_in_transport_to_from_or_in UBERON:0001893 ! telencephalon -relationship: results_in_transport_to_from_or_in UBERON:0001893 ! telencephalon +intersection_of: RO:0002344 UBERON:0001893 ! results in transport to from or in telencephalon +relationship: RO:0002344 UBERON:0001893 ! results in transport to from or in telencephalon [Term] id: GO:0022031 @@ -63052,8 +62878,8 @@ def: "The orderly movement of an astrocyte cell through the telencephalon." [GO_ is_a: GO:0022030 ! telencephalon glial cell migration is_a: GO:0043615 ! astrocyte cell migration intersection_of: GO:0043615 ! astrocyte cell migration -intersection_of: results_in_transport_to_from_or_in UBERON:0001893 ! telencephalon -relationship: results_in_transport_to_from_or_in UBERON:0001893 ! telencephalon +intersection_of: RO:0002344 UBERON:0001893 ! results in transport to from or in telencephalon +relationship: RO:0002344 UBERON:0001893 ! results in transport to from or in telencephalon [Term] id: GO:0022032 @@ -63062,10 +62888,10 @@ namespace: biological_process def: "The multiplication or reproduction of telencephalon oligodendrocyte cells, resulting in the expansion of a cell population." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0022030 ! telencephalon glial cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: has_primary_input CL:0000128 ! oligodendrocyte -intersection_of: results_in_transport_to_from_or_in UBERON:0001893 ! telencephalon -relationship: has_primary_input CL:0000128 ! oligodendrocyte -relationship: results_in_transport_to_from_or_in UBERON:0001893 ! telencephalon +intersection_of: RO:0002344 UBERON:0001893 ! results in transport to from or in telencephalon +intersection_of: RO:0004009 CL:0000128 ! has primary input oligodendrocyte +relationship: RO:0002344 UBERON:0001893 ! results in transport to from or in telencephalon +relationship: RO:0004009 CL:0000128 ! has primary input oligodendrocyte [Term] id: GO:0022035 @@ -63074,9 +62900,9 @@ namespace: biological_process def: "The movement of a cell within a rhombomere. This process is known to occur as an early step in the generation of anatomical structure from a rhombomere." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, PMID:15629700] is_a: GO:0021535 ! cell migration in hindbrain intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_transport_to_from_or_in UBERON:0001892 ! rhombomere +intersection_of: RO:0002344 UBERON:0001892 ! results in transport to from or in rhombomere relationship: part_of GO:0021546 ! rhombomere development -relationship: results_in_transport_to_from_or_in UBERON:0001892 ! rhombomere +relationship: RO:0002344 UBERON:0001892 ! results in transport to from or in rhombomere [Term] id: GO:0022037 @@ -63085,9 +62911,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the metencephalon over time, from its formation to the mature structure." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001895 ! metencephalon +intersection_of: RO:0002296 UBERON:0001895 ! results in development of metencephalon relationship: part_of GO:0030902 ! hindbrain development -relationship: results_in_development_of UBERON:0001895 ! metencephalon +relationship: RO:0002296 UBERON:0001895 ! results in development of metencephalon [Term] id: GO:0022038 @@ -63096,9 +62922,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the corpus callosum over time, from its formation to the mature structure. The corpus callosum is a thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provide communication between the right and left cerebral hemispheres." [GO_REF:0000021, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002336 ! corpus callosum +intersection_of: RO:0002296 UBERON:0002336 ! results in development of corpus callosum relationship: part_of GO:0021537 ! telencephalon development -relationship: results_in_development_of UBERON:0002336 ! corpus callosum +relationship: RO:0002296 UBERON:0002336 ! results in development of corpus callosum [Term] id: GO:0022402 @@ -63143,8 +62969,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of attachment of a cell to another cell." [GOC:isa_complete] is_a: GO:0030155 ! regulation of cell adhesion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0098609 ! cell-cell adhesion -relationship: regulates GO:0098609 ! cell-cell adhesion +intersection_of: RO:0002211 GO:0098609 ! regulates (processual) cell-cell adhesion +relationship: RO:0002211 GO:0098609 ! regulates (processual) cell-cell adhesion [Term] id: GO:0022408 @@ -63158,8 +62984,8 @@ synonym: "inhibition of cell-cell adhesion" NARROW [] is_a: GO:0007162 ! negative regulation of cell adhesion is_a: GO:0022407 ! regulation of cell-cell adhesion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0098609 ! cell-cell adhesion -relationship: negatively_regulates GO:0098609 ! cell-cell adhesion +intersection_of: RO:0002212 GO:0098609 ! negatively regulates cell-cell adhesion +relationship: RO:0002212 GO:0098609 ! negatively regulates cell-cell adhesion [Term] id: GO:0022409 @@ -63174,8 +63000,8 @@ synonym: "upregulation of cell-cell adhesion" EXACT [] is_a: GO:0022407 ! regulation of cell-cell adhesion is_a: GO:0045785 ! positive regulation of cell adhesion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0098609 ! cell-cell adhesion -relationship: positively_regulates GO:0098609 ! cell-cell adhesion +intersection_of: RO:0002213 GO:0098609 ! positively regulates cell-cell adhesion +relationship: RO:0002213 GO:0098609 ! positively regulates cell-cell adhesion [Term] id: GO:0022410 @@ -63198,9 +63024,9 @@ synonym: "cell structure disassembly" EXACT [] synonym: "cellular component disassembly at cellular level" EXACT [] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_disassembly_of GO:0005575 ! cellular_component +intersection_of: RO:0002590 GO:0005575 ! results in disassembly of cellular_component disjoint_from: GO:0022607 ! cellular component assembly -relationship: results_in_disassembly_of GO:0005575 ! cellular_component +relationship: RO:0002590 GO:0005575 ! results in disassembly of cellular_component property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI [Term] @@ -63257,8 +63083,8 @@ synonym: "menstrual cycle process" RELATED [] is_a: GO:0022414 ! reproductive process is_a: GO:0048511 ! rhythmic process relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa relationship: part_of GO:0042698 ! ovulation cycle +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa [Term] id: GO:0022603 @@ -63268,8 +63094,8 @@ def: "Any process that modulates the frequency, rate or extent of anatomical str synonym: "regulation of morphogenesis" EXACT [] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009653 ! anatomical structure morphogenesis -relationship: regulates GO:0009653 ! anatomical structure morphogenesis +intersection_of: RO:0002211 GO:0009653 ! regulates (processual) anatomical structure morphogenesis +relationship: RO:0002211 GO:0009653 ! regulates (processual) anatomical structure morphogenesis [Term] id: GO:0022604 @@ -63281,8 +63107,8 @@ synonym: "positive regulation of cell shape and cell size" RELATED [GOC:dph, GOC synonym: "regulation of cell shape and cell size" RELATED [GOC:dph, GOC:tb] is_a: GO:0022603 ! regulation of anatomical structure morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0000902 ! cell morphogenesis -relationship: regulates GO:0000902 ! cell morphogenesis +intersection_of: RO:0002211 GO:0000902 ! regulates (processual) cell morphogenesis +relationship: RO:0002211 GO:0000902 ! regulates (processual) cell morphogenesis [Term] id: GO:0022605 @@ -63306,9 +63132,9 @@ synonym: "cell structure assembly" EXACT [] synonym: "cellular component assembly at cellular level" EXACT [] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_assembly_of GO:0005575 ! cellular_component +intersection_of: RO:0002588 GO:0005575 ! results in assembly of cellular_component relationship: part_of GO:0044085 ! cellular component biogenesis -relationship: results_in_assembly_of GO:0005575 ! cellular_component +relationship: RO:0002588 GO:0005575 ! results in assembly of cellular_component [Term] id: GO:0022612 @@ -63317,9 +63143,9 @@ namespace: biological_process def: "The process in which the anatomical structures of a gland are generated and organized." [GOC:isa_complete] is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002530 ! gland +intersection_of: RO:0002298 UBERON:0002530 ! results in morphogenesis of gland relationship: part_of GO:0048732 ! gland development -relationship: results_in_morphogenesis_of UBERON:0002530 ! gland +relationship: RO:0002298 UBERON:0002530 ! results in morphogenesis of gland [Term] id: GO:0022613 @@ -63338,8 +63164,8 @@ def: "A process that results in the breakdown of the extracellular matrix." [GOC is_a: GO:0022411 ! cellular component disassembly is_a: GO:0030198 ! extracellular matrix organization intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0031012 ! extracellular matrix -relationship: results_in_disassembly_of GO:0031012 ! extracellular matrix +intersection_of: RO:0002590 GO:0031012 ! results in disassembly of extracellular matrix +relationship: RO:0002590 GO:0031012 ! results in disassembly of extracellular matrix [Term] id: GO:0022618 @@ -63353,9 +63179,9 @@ synonym: "RNP complex assembly" EXACT [] is_a: GO:0065003 ! protein-containing complex assembly is_a: GO:0071826 ! protein-RNA complex organization intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:1990904 ! ribonucleoprotein complex +intersection_of: RO:0002588 GO:1990904 ! results in assembly of ribonucleoprotein complex relationship: part_of GO:0022613 ! ribonucleoprotein complex biogenesis -relationship: results_in_assembly_of GO:1990904 ! ribonucleoprotein complex +relationship: RO:0002588 GO:1990904 ! results in assembly of ribonucleoprotein complex [Term] id: GO:0022626 @@ -63371,8 +63197,8 @@ is_a: GO:0005840 ! ribosome intersection_of: GO:0005840 ! ribosome intersection_of: part_of GO:0005829 ! cytosol relationship: in_taxon NCBITaxon:131567 {all_only="true"} ! cellular organisms -relationship: only_in_taxon NCBITaxon:131567 ! cellular organisms relationship: part_of GO:0005829 ! cytosol +relationship: RO:0002160 NCBITaxon:131567 ! only in taxon cellular organisms [Term] id: GO:0022804 @@ -63394,8 +63220,8 @@ synonym: "active ion transmembrane transporter activity" BROAD [] is_a: GO:0015075 ! monoatomic ion transmembrane transporter activity is_a: GO:0022804 ! active transmembrane transporter activity intersection_of: GO:0022804 ! active transmembrane transporter activity -intersection_of: has_primary_input CHEBI:24867 ! monoatomic ion -relationship: has_primary_input CHEBI:24867 ! monoatomic ion +intersection_of: RO:0004009 CHEBI:24867 ! has primary input monoatomic ion +relationship: RO:0004009 CHEBI:24867 ! has primary input monoatomic ion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24479" xsd:anyURI [Term] @@ -63424,9 +63250,9 @@ xref: Reactome:R-HSA-6784434 "An unknown carrier transports cytosolic glyoxylate xref: Reactome:R-HSA-6784436 "An unknown carrier transports mitochondrial glyoxylate to the cytosol" is_a: GO:0005215 ! transporter activity intersection_of: GO:0005215 ! transporter activity -intersection_of: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane relationship: part_of GO:0055085 ! transmembrane transport -relationship: results_in_transport_across GO:0016020 ! membrane +relationship: RO:0002342 GO:0016020 ! results in transport across membrane [Term] id: GO:0022884 @@ -63435,8 +63261,8 @@ namespace: molecular_function def: "Enables the transfer of a macromolecule from one side of a membrane to the other." [GOC:mtg_transport, ISBN:0815340729] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:33694 ! biomacromolecule -relationship: has_primary_input CHEBI:33694 ! biomacromolecule +intersection_of: RO:0004009 CHEBI:33694 ! has primary input biomacromolecule +relationship: RO:0004009 CHEBI:33694 ! has primary input biomacromolecule [Term] id: GO:0022890 @@ -63453,21 +63279,21 @@ synonym: "monovalent inorganic cation transmembrane transporter activity" NARROW synonym: "trivalent inorganic cation transmembrane transporter activity" NARROW [] is_a: GO:0015318 ! inorganic molecular entity transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:36915 ! inorganic cation -relationship: has_primary_input CHEBI:36915 ! inorganic cation +intersection_of: RO:0004009 CHEBI:36915 ! has primary input inorganic cation +relationship: RO:0004009 CHEBI:36915 ! has primary input inorganic cation [Term] id: GO:0022898 name: regulation of transmembrane transporter activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of transmembrane transporter activity." [GOC:dph, GOC:mtg_cardio, GOC:mtg_transport] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate is_a: GO:0032409 ! regulation of transporter activity is_a: GO:0034762 ! regulation of transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0022857 ! transmembrane transporter activity -relationship: regulates GO:0022857 ! transmembrane transporter activity -relationship: regulates GO:0055085 ! transmembrane transport +intersection_of: RO:0002211 GO:0022857 ! regulates (processual) transmembrane transporter activity +relationship: RO:0002211 GO:0022857 ! regulates (processual) transmembrane transporter activity +relationship: RO:0002211 GO:0055085 ! regulates (processual) transmembrane transport [Term] id: GO:0023019 @@ -63488,8 +63314,8 @@ namespace: molecular_function def: "Binding to a major histocompatibility complex." [GOC:mtg_signal, GOC:vw] is_a: GO:0044877 ! protein-containing complex binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input GO:0042611 ! MHC protein complex -relationship: has_primary_input GO:0042611 ! MHC protein complex +intersection_of: RO:0004009 GO:0042611 ! has primary input MHC protein complex +relationship: RO:0004009 GO:0042611 ! has primary input MHC protein complex creation_date: 2010-02-16T09:30:50Z [Term] @@ -63499,8 +63325,8 @@ namespace: molecular_function def: "Binding to a class II major histocompatibility complex." [GOC:mtg_signal, GOC:vw] is_a: GO:0023023 ! MHC protein complex binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input GO:0042613 ! MHC class II protein complex -relationship: has_primary_input GO:0042613 ! MHC class II protein complex +intersection_of: RO:0004009 GO:0042613 ! has primary input MHC class II protein complex +relationship: RO:0004009 GO:0042613 ! has primary input MHC class II protein complex creation_date: 2010-02-16T09:30:50Z [Term] @@ -63512,8 +63338,8 @@ synonym: "regulation of signaling process" RELATED [GOC:bf] synonym: "regulation of signalling process" RELATED [GOC:mah] is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0023052 ! signaling -relationship: regulates GO:0023052 ! signaling +intersection_of: RO:0002211 GO:0023052 ! regulates (processual) signaling +relationship: RO:0002211 GO:0023052 ! regulates (processual) signaling creation_date: 2010-02-16T09:30:50Z [Term] @@ -63553,8 +63379,8 @@ synonym: "positive regulation of signalling process" EXACT [GOC:mah] is_a: GO:0023051 ! regulation of signaling is_a: GO:0048518 ! positive regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0023052 ! signaling -relationship: positively_regulates GO:0023052 ! signaling +intersection_of: RO:0002213 GO:0023052 ! positively regulates signaling +relationship: RO:0002213 GO:0023052 ! positively regulates signaling creation_date: 2010-02-16T09:30:50Z [Term] @@ -63567,8 +63393,8 @@ synonym: "negative regulation of signalling process" RELATED [GOC:mah] is_a: GO:0023051 ! regulation of signaling is_a: GO:0048519 ! negative regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0023052 ! signaling -relationship: negatively_regulates GO:0023052 ! signaling +intersection_of: RO:0002212 GO:0023052 ! negatively regulates signaling +relationship: RO:0002212 GO:0023052 ! negatively regulates signaling creation_date: 2010-02-16T09:30:50Z [Term] @@ -63596,8 +63422,8 @@ synonym: "heavy metal ion transport" NARROW [] synonym: "metal ion export" NARROW [] is_a: GO:0006812 ! monoatomic cation transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:25213 ! metal cation -relationship: has_primary_input CHEBI:25213 ! metal cation +intersection_of: RO:0004009 CHEBI:25213 ! has primary input metal cation +relationship: RO:0004009 CHEBI:25213 ! has primary input metal cation property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23033" xsd:anyURI created_by: mah creation_date: 2009-07-31T01:07:46Z @@ -63612,10 +63438,23 @@ synonym: "cellular monoatomic cation homeostasis" EXACT [] is_a: GO:0006873 ! intracellular monoatomic ion homeostasis is_a: GO:0055080 ! monoatomic cation homeostasis intersection_of: GO:0019725 ! cellular homeostasis -intersection_of: regulates_levels_of CHEBI:23906 ! monoatomic cation -relationship: regulates_levels_of CHEBI:23906 ! monoatomic cation +intersection_of: RO:0002332 CHEBI:23906 ! regulates levels of monoatomic cation +relationship: RO:0002332 CHEBI:23906 ! regulates levels of monoatomic cation property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24455" xsd:anyURI +[Term] +id: GO:0030007 +name: intracellular potassium ion homeostasis +namespace: biological_process +alt_id: GO:0017079 +def: "A homeostatic process involved in the maintenance of a steady state level of potassium ions within a cell." [GOC:mah] +synonym: "cellular potassium ion homeostasis" EXACT [] +is_a: GO:0030003 ! intracellular monoatomic cation homeostasis +is_a: GO:0055075 ! potassium ion homeostasis +intersection_of: GO:0055082 ! intracellular chemical homeostasis +intersection_of: RO:0002332 CHEBI:29103 ! regulates levels of potassium(1+) +relationship: RO:0002332 CHEBI:29103 ! regulates levels of potassium(1+) + [Term] id: GO:0030010 name: establishment of cell polarity @@ -63644,7 +63483,7 @@ name: sarcomere namespace: cellular_component def: "The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs." [ISBN:0815316194] xref: Wikipedia:Sarcomere -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of GO:0030016 ! myofibril relationship: part_of GO:0043292 ! contractile muscle fiber @@ -63657,8 +63496,8 @@ def: "Any cellular process that depends upon or alters the actin cytoskeleton, t synonym: "microfilament-based process" RELATED [] is_a: GO:0009987 ! cellular process intersection_of: GO:0009987 ! cellular process -intersection_of: process_has_causal_agent GO:0005884 ! actin filament -relationship: process_has_causal_agent GO:0005884 ! actin filament +intersection_of: RO:0002608 GO:0005884 ! process has causal agent actin filament +relationship: RO:0002608 GO:0005884 ! process has causal agent actin filament [Term] id: GO:0030030 @@ -63671,8 +63510,8 @@ synonym: "cell projection organization and biogenesis" RELATED [GOC:mah] synonym: "cell surface structure organization and biogenesis" RELATED [GOC:mah] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0042995 ! cell projection -relationship: results_in_organization_of GO:0042995 ! cell projection +intersection_of: RO:0002592 GO:0042995 ! results in organization of cell projection +relationship: RO:0002592 GO:0042995 ! results in organization of cell projection property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26279" xsd:anyURI [Term] @@ -63685,8 +63524,8 @@ synonym: "formation of a cell surface projection" EXACT [] is_a: GO:0022607 ! cellular component assembly is_a: GO:0030030 ! cell projection organization intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0042995 ! cell projection -relationship: results_in_assembly_of GO:0042995 ! cell projection +intersection_of: RO:0002588 GO:0042995 ! results in assembly of cell projection +relationship: RO:0002588 GO:0042995 ! results in assembly of cell projection [Term] id: GO:0030033 @@ -63697,8 +63536,8 @@ synonym: "microvillus biogenesis" RELATED [GOC:mah] is_a: GO:0032528 ! microvillus organization is_a: GO:0120031 ! plasma membrane bounded cell projection assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0005902 ! microvillus -relationship: results_in_assembly_of GO:0005902 ! microvillus +intersection_of: RO:0002588 GO:0005902 ! results in assembly of microvillus +relationship: RO:0002588 GO:0005902 ! results in assembly of microvillus [Term] id: GO:0030036 @@ -63712,8 +63551,8 @@ synonym: "actin modulating activity" RELATED [] is_a: GO:0007010 ! cytoskeleton organization is_a: GO:0030029 ! actin filament-based process intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0015629 ! actin cytoskeleton -relationship: results_in_organization_of GO:0015629 ! actin cytoskeleton +intersection_of: RO:0002592 GO:0015629 ! results in organization of actin cytoskeleton +relationship: RO:0002592 GO:0015629 ! results in organization of actin cytoskeleton property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23114" xsd:anyURI [Term] @@ -63722,7 +63561,7 @@ name: actin filament-based movement namespace: biological_process def: "Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins." [GOC:BHF, GOC:mah] is_a: GO:0030029 ! actin filament-based process -relationship: process_has_causal_agent GO:0005884 ! actin filament +relationship: RO:0002608 GO:0005884 ! process has causal agent actin filament property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19809" xsd:anyURI [Term] @@ -63734,10 +63573,10 @@ is_a: GO:0030048 ! actin filament-based movement is_a: GO:0099515 ! actin filament-based transport is_a: GO:0099518 ! vesicle cytoskeletal trafficking intersection_of: GO:0046907 ! intracellular transport -intersection_of: has_primary_input GO:0031982 ! vesicle -intersection_of: results_in_transport_along GO:0005884 ! actin filament -relationship: has_primary_input GO:0031982 ! vesicle -relationship: results_in_transport_along GO:0005884 ! actin filament +intersection_of: RO:0002341 GO:0005884 ! results in transport along actin filament +intersection_of: RO:0004009 GO:0031982 ! has primary input vesicle +relationship: RO:0002341 GO:0005884 ! results in transport along actin filament +relationship: RO:0004009 GO:0031982 ! has primary input vesicle [Term] id: GO:0030054 @@ -63748,7 +63587,7 @@ subset: goslim_agr subset: goslim_drosophila subset: goslim_flybase_ribbon xref: Wikipedia:Cell_junction -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: never_in_taxon NCBITaxon:4751 ! Fungi [Term] @@ -63759,8 +63598,8 @@ def: "The formation of mature insulin by proteolysis of the precursor preproinsu is_a: GO:0016486 ! peptide hormone processing is_a: GO:1901142 ! insulin metabolic process intersection_of: GO:0016485 ! protein processing -intersection_of: has_primary_input_or_output PR:000009054 ! insulin gene translation product -relationship: has_primary_input_or_output PR:000009054 ! insulin gene translation product +intersection_of: RO:0004007 PR:000009054 ! has primary input or output insulin gene translation product +relationship: RO:0004007 PR:000009054 ! has primary input or output insulin gene translation product [Term] id: GO:0030072 @@ -63770,8 +63609,8 @@ def: "The regulated release of a peptide hormone from a cell." [GOC:mah] is_a: GO:0002790 ! peptide secretion is_a: GO:0046879 ! hormone secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:25905 ! peptide hormone -relationship: has_primary_input CHEBI:25905 ! peptide hormone +intersection_of: RO:0004009 CHEBI:25905 ! has primary input peptide hormone +relationship: RO:0004009 CHEBI:25905 ! has primary input peptide hormone [Term] id: GO:0030073 @@ -63781,10 +63620,10 @@ def: "The regulated release of proinsulin from secretory granules accompanied by is_a: GO:0009306 ! protein secretion is_a: GO:0030072 ! peptide hormone secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input PR:000009054 ! insulin gene translation product -relationship: has_primary_input PR:000009054 ! insulin gene translation product +intersection_of: RO:0004009 PR:000009054 ! has primary input insulin gene translation product relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa +relationship: RO:0004009 PR:000009054 ! has primary input insulin gene translation product property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/11255" xsd:anyURI [Term] @@ -63799,10 +63638,10 @@ synonym: "hematopoiesis" EXACT [] xref: Wikipedia:Haematopoiesis is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000988 ! hematopoietic cell +intersection_of: RO:0002296 CL:0000988 ! results in development of hematopoietic cell relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa -relationship: results_in_development_of CL:0000988 ! hematopoietic cell +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa +relationship: RO:0002296 CL:0000988 ! results in development of hematopoietic cell property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22178" xsd:anyURI [Term] @@ -63818,8 +63657,8 @@ synonym: "lymphocytic blood cell differentiation" EXACT [] is_a: GO:0046649 ! lymphocyte activation is_a: GO:1903131 ! mononuclear cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000542 ! lymphocyte -relationship: results_in_acquisition_of_features_of CL:0000542 ! lymphocyte +intersection_of: RO:0002315 CL:0000542 ! results in acquisition of features of lymphocyte +relationship: RO:0002315 CL:0000542 ! results in acquisition of features of lymphocyte [Term] id: GO:0030099 @@ -63828,9 +63667,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of any cell of the myeloid leukocyte, megakaryocyte, thrombocyte, or erythrocyte lineages." [GOC:add, ISBN:0781735149] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000763 ! myeloid cell +intersection_of: RO:0002315 CL:0000763 ! results in acquisition of features of myeloid cell relationship: part_of GO:0030097 ! hemopoiesis -relationship: results_in_acquisition_of_features_of CL:0000763 ! myeloid cell +relationship: RO:0002315 CL:0000763 ! results in acquisition of features of myeloid cell [Term] id: GO:0030100 @@ -63840,8 +63679,8 @@ def: "Any process that modulates the frequency, rate or extent of endocytosis." is_a: GO:0051128 ! regulation of cellular component organization is_a: GO:0060627 ! regulation of vesicle-mediated transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006897 ! endocytosis -relationship: regulates GO:0006897 ! endocytosis +intersection_of: RO:0002211 GO:0006897 ! regulates (processual) endocytosis +relationship: RO:0002211 GO:0006897 ! regulates (processual) endocytosis [Term] id: GO:0030101 @@ -63851,8 +63690,8 @@ def: "The change in morphology and behavior of a natural killer cell in response synonym: "NK cell activation" EXACT [] is_a: GO:0046649 ! lymphocyte activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000623 ! natural killer cell -relationship: has_primary_input CL:0000623 ! natural killer cell +intersection_of: RO:0004009 CL:0000623 ! has primary input natural killer cell +relationship: RO:0004009 CL:0000623 ! has primary input natural killer cell [Term] id: GO:0030103 @@ -63861,8 +63700,8 @@ namespace: biological_process def: "The regulated release of vasopressin from secretory granules into the blood." [GOC:mah] is_a: GO:0030072 ! peptide hormone secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:9937 ! vasopressin -relationship: has_primary_input CHEBI:9937 ! vasopressin +intersection_of: RO:0004009 CHEBI:9937 ! has primary input vasopressin +relationship: RO:0004009 CHEBI:9937 ! has primary input vasopressin [Term] id: GO:0030133 @@ -63902,10 +63741,9 @@ synonym: "sphingolipid synthesis" EXACT [] xref: MetaCyc:PWY-5129 is_a: GO:0006665 ! sphingolipid metabolic process is_a: GO:0046467 ! membrane lipid biosynthetic process -is_a: GO:1901566 ! organonitrogen compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26739 ! sphingolipid -relationship: has_primary_output CHEBI:26739 ! sphingolipid +intersection_of: RO:0004008 CHEBI:26739 ! has primary output sphingolipid +relationship: RO:0004008 CHEBI:26739 ! has primary output sphingolipid [Term] id: GO:0030149 @@ -63917,10 +63755,9 @@ synonym: "sphingolipid catabolism" EXACT [] synonym: "sphingolipid degradation" EXACT [] is_a: GO:0006665 ! sphingolipid metabolic process is_a: GO:0046466 ! membrane lipid catabolic process -is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:26739 ! sphingolipid -relationship: has_primary_input CHEBI:26739 ! sphingolipid +intersection_of: RO:0004009 CHEBI:26739 ! has primary input sphingolipid +relationship: RO:0004009 CHEBI:26739 ! has primary input sphingolipid [Term] id: GO:0030154 @@ -63937,8 +63774,8 @@ subset: goslim_plant_ribbon xref: Wikipedia:Cellular_differentiation is_a: GO:0048869 ! cellular developmental process intersection_of: GO:0048869 ! cellular developmental process -intersection_of: results_in_acquisition_of_features_of CL:0000000 ! cell -relationship: results_in_acquisition_of_features_of CL:0000000 ! cell +intersection_of: RO:0002315 CL:0000000 ! results in acquisition of features of cell +relationship: RO:0002315 CL:0000000 ! results in acquisition of features of cell property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24390" xsd:anyURI [Term] @@ -63949,8 +63786,8 @@ def: "Any process that modulates the frequency, rate or extent of attachment of synonym: "cell adhesion receptor regulator activity" RELATED [] is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007155 ! cell adhesion -relationship: regulates GO:0007155 ! cell adhesion +intersection_of: RO:0002211 GO:0007155 ! regulates (processual) cell adhesion +relationship: RO:0002211 GO:0007155 ! regulates (processual) cell adhesion [Term] id: GO:0030162 @@ -63960,8 +63797,8 @@ def: "Any process that modulates the frequency, rate or extent of the hydrolysis synonym: "regulation of peptidolysis" EXACT [] is_a: GO:0051246 ! regulation of protein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006508 ! proteolysis -relationship: regulates GO:0006508 ! proteolysis +intersection_of: RO:0002211 GO:0006508 ! regulates (processual) proteolysis +relationship: RO:0002211 GO:0006508 ! regulates (processual) proteolysis [Term] id: GO:0030163 @@ -63987,11 +63824,11 @@ synonym: "protein breakdown" EXACT [] synonym: "protein catabolism" EXACT [] synonym: "protein degradation" EXACT [] xref: Wikipedia:Protein_catabolism +is_a: GO:0009056 ! catabolic process is_a: GO:0019538 ! protein metabolic process -is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input PR:000000001 ! protein -relationship: has_primary_input PR:000000001 ! protein +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: RO:0004009 PR:000000001 ! has primary input protein property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23112" xsd:anyURI [Term] @@ -64006,8 +63843,8 @@ synonym: "proteoglycan synthesis" EXACT [] is_a: GO:0006029 ! proteoglycan metabolic process is_a: GO:0009101 ! glycoprotein biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:37396 ! proteoglycan -relationship: has_primary_output CHEBI:37396 ! proteoglycan +intersection_of: RO:0004008 CHEBI:37396 ! has primary output proteoglycan +relationship: RO:0004008 CHEBI:37396 ! has primary output proteoglycan [Term] id: GO:0030167 @@ -64020,8 +63857,8 @@ synonym: "proteoglycan degradation" EXACT [] is_a: GO:0006029 ! proteoglycan metabolic process is_a: GO:0006516 ! glycoprotein catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:37396 ! proteoglycan -relationship: has_primary_input CHEBI:37396 ! proteoglycan +intersection_of: RO:0004009 CHEBI:37396 ! has primary input proteoglycan +relationship: RO:0004009 CHEBI:37396 ! has primary input proteoglycan [Term] id: GO:0030168 @@ -64031,9 +63868,9 @@ def: "A series of progressive, overlapping events triggered by exposure of the p synonym: "blood coagulation, platelet activation" EXACT [GOC:add, GOC:pde] is_a: GO:0001775 ! cell activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000233 ! platelet -relationship: has_primary_input CL:0000233 ! platelet +intersection_of: RO:0004009 CL:0000233 ! has primary input platelet relationship: part_of GO:0007596 ! blood coagulation +relationship: RO:0004009 CL:0000233 ! has primary input platelet [Term] id: GO:0030182 @@ -64042,9 +63879,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a neuron." [GOC:mah] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000540 ! neuron +intersection_of: RO:0002315 CL:0000540 ! results in acquisition of features of neuron relationship: part_of GO:0048699 ! generation of neurons -relationship: results_in_acquisition_of_features_of CL:0000540 ! neuron +relationship: RO:0002315 CL:0000540 ! results in acquisition of features of neuron [Term] id: GO:0030183 @@ -64060,8 +63897,8 @@ synonym: "B-lymphocyte differentiation" EXACT [] is_a: GO:0030098 ! lymphocyte differentiation is_a: GO:0042113 ! B cell activation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000236 ! B cell -relationship: results_in_acquisition_of_features_of CL:0000236 ! B cell +intersection_of: RO:0002315 CL:0000236 ! results in acquisition of features of B cell +relationship: RO:0002315 CL:0000236 ! results in acquisition of features of B cell [Term] id: GO:0030186 @@ -64073,8 +63910,8 @@ is_a: GO:0042430 ! indole-containing compound metabolic process is_a: GO:0042445 ! hormone metabolic process is_a: GO:0043603 ! amide metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:16796 ! melatonin -relationship: has_primary_input_or_output CHEBI:16796 ! melatonin +intersection_of: RO:0004007 CHEBI:16796 ! has primary input or output melatonin +relationship: RO:0004007 CHEBI:16796 ! has primary input or output melatonin [Term] id: GO:0030187 @@ -64090,8 +63927,8 @@ is_a: GO:0042435 ! indole-containing compound biosynthetic process is_a: GO:0042446 ! hormone biosynthetic process is_a: GO:0043604 ! amide biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:16796 ! melatonin -relationship: has_primary_output CHEBI:16796 ! melatonin +intersection_of: RO:0004008 CHEBI:16796 ! has primary output melatonin +relationship: RO:0004008 CHEBI:16796 ! has primary output melatonin [Term] id: GO:0030193 @@ -64103,8 +63940,8 @@ is_a: GO:0050818 ! regulation of coagulation is_a: GO:0061041 ! regulation of wound healing is_a: GO:1900046 ! regulation of hemostasis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007596 ! blood coagulation -relationship: regulates GO:0007596 ! blood coagulation +intersection_of: RO:0002211 GO:0007596 ! regulates (processual) blood coagulation +relationship: RO:0002211 GO:0007596 ! regulates (processual) blood coagulation [Term] id: GO:0030194 @@ -64121,8 +63958,8 @@ is_a: GO:0050820 ! positive regulation of coagulation is_a: GO:0090303 ! positive regulation of wound healing is_a: GO:1900048 ! positive regulation of hemostasis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007596 ! blood coagulation -relationship: positively_regulates GO:0007596 ! blood coagulation +intersection_of: RO:0002213 GO:0007596 ! positively regulates blood coagulation +relationship: RO:0002213 GO:0007596 ! positively regulates blood coagulation [Term] id: GO:0030195 @@ -64138,8 +63975,8 @@ is_a: GO:0050819 ! negative regulation of coagulation is_a: GO:0061045 ! negative regulation of wound healing is_a: GO:1900047 ! negative regulation of hemostasis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007596 ! blood coagulation -relationship: negatively_regulates GO:0007596 ! blood coagulation +intersection_of: RO:0002212 GO:0007596 ! negatively regulates blood coagulation +relationship: RO:0002212 GO:0007596 ! negatively regulates blood coagulation [Term] id: GO:0030198 @@ -64154,8 +63991,8 @@ synonym: "extracellular matrix organization and biogenesis" RELATED [GOC:mah] is_a: GO:0043062 ! extracellular structure organization is_a: GO:0045229 ! external encapsulating structure organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0031012 ! extracellular matrix -relationship: results_in_organization_of GO:0031012 ! extracellular matrix +intersection_of: RO:0002592 GO:0031012 ! results in organization of extracellular matrix +relationship: RO:0002592 GO:0031012 ! results in organization of extracellular matrix [Term] id: GO:0030199 @@ -64167,9 +64004,9 @@ synonym: "fibrillar collagen organization" EXACT [GOC:mah] is_a: GO:0030198 ! extracellular matrix organization is_a: GO:0097435 ! supramolecular fiber organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0098643 ! banded collagen fibril +intersection_of: RO:0002592 GO:0098643 ! results in organization of banded collagen fibril relationship: never_in_taxon NCBITaxon:4751 ! Fungi -relationship: results_in_organization_of GO:0098643 ! banded collagen fibril +relationship: RO:0002592 GO:0098643 ! results in organization of banded collagen fibril [Term] id: GO:0030203 @@ -64179,8 +64016,8 @@ def: "The chemical reactions and pathways involving glycosaminoglycans, any of a synonym: "glycosaminoglycan metabolism" EXACT [] is_a: GO:0006022 ! aminoglycan metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:18085 ! glycosaminoglycan -relationship: has_primary_input_or_output CHEBI:18085 ! glycosaminoglycan +intersection_of: RO:0004007 CHEBI:18085 ! has primary input or output glycosaminoglycan +relationship: RO:0004007 CHEBI:18085 ! has primary input or output glycosaminoglycan [Term] id: GO:0030204 @@ -64193,9 +64030,9 @@ synonym: "chondroitin sulphate metabolism" EXACT [] is_a: GO:0006790 ! sulfur compound metabolic process is_a: GO:1903510 ! mucopolysaccharide metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:37397 ! chondroitin sulfate -relationship: has_primary_input_or_output CHEBI:37397 ! chondroitin sulfate +intersection_of: RO:0004007 CHEBI:37397 ! has primary input or output chondroitin sulfate relationship: part_of GO:0050654 ! chondroitin sulfate proteoglycan metabolic process +relationship: RO:0004007 CHEBI:37397 ! has primary input or output chondroitin sulfate [Term] id: GO:0030206 @@ -64213,9 +64050,9 @@ is_a: GO:0006024 ! glycosaminoglycan biosynthetic process is_a: GO:0030204 ! chondroitin sulfate metabolic process is_a: GO:0044272 ! sulfur compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:37397 ! chondroitin sulfate -relationship: has_primary_output CHEBI:37397 ! chondroitin sulfate +intersection_of: RO:0004008 CHEBI:37397 ! has primary output chondroitin sulfate relationship: part_of GO:0050650 ! chondroitin sulfate proteoglycan biosynthetic process +relationship: RO:0004008 CHEBI:37397 ! has primary output chondroitin sulfate property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27107" xsd:anyURI [Term] @@ -64228,15 +64065,16 @@ synonym: "chondroitin sulfate catabolism" EXACT [] synonym: "chondroitin sulfate degradation" EXACT [] synonym: "chondroitin sulphate catabolic process" EXACT [] synonym: "chondroitin sulphate catabolism" EXACT [] -xref: MetaCyc:PWY-6572 -xref: MetaCyc:PWY-6573 +xref: MetaCyc:PWY-6572 {source="skos:narrowMatch"} +xref: MetaCyc:PWY-6573 {source="skos:narrowMatch"} is_a: GO:0006027 ! glycosaminoglycan catabolic process is_a: GO:0030204 ! chondroitin sulfate metabolic process is_a: GO:0044273 ! sulfur compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:37397 ! chondroitin sulfate -relationship: has_primary_input CHEBI:37397 ! chondroitin sulfate +intersection_of: RO:0004009 CHEBI:37397 ! has primary input chondroitin sulfate +relationship: RO:0004009 CHEBI:37397 ! has primary input chondroitin sulfate property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27107" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28527" xsd:anyURI [Term] id: GO:0030212 @@ -64246,8 +64084,8 @@ def: "The chemical reactions and pathways involving hyaluronan, the naturally oc synonym: "hyaluronan metabolism" EXACT [] is_a: GO:1903510 ! mucopolysaccharide metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:16336 ! hyaluronic acid -relationship: has_primary_input_or_output CHEBI:16336 ! hyaluronic acid +intersection_of: RO:0004007 CHEBI:16336 ! has primary input or output hyaluronic acid +relationship: RO:0004007 CHEBI:16336 ! has primary input or output hyaluronic acid [Term] id: GO:0030213 @@ -64261,8 +64099,8 @@ synonym: "hyaluronan synthesis" EXACT [] is_a: GO:0006024 ! glycosaminoglycan biosynthetic process is_a: GO:0030212 ! hyaluronan metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:16336 ! hyaluronic acid -relationship: has_primary_output CHEBI:16336 ! hyaluronic acid +intersection_of: RO:0004008 CHEBI:16336 ! has primary output hyaluronic acid +relationship: RO:0004008 CHEBI:16336 ! has primary output hyaluronic acid [Term] id: GO:0030214 @@ -64276,8 +64114,8 @@ xref: MetaCyc:PWY-7645 is_a: GO:0006027 ! glycosaminoglycan catabolic process is_a: GO:0030212 ! hyaluronan metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:16336 ! hyaluronic acid -relationship: has_primary_input CHEBI:16336 ! hyaluronic acid +intersection_of: RO:0004009 CHEBI:16336 ! has primary input hyaluronic acid +relationship: RO:0004009 CHEBI:16336 ! has primary input hyaluronic acid property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27107" xsd:anyURI [Term] @@ -64288,9 +64126,9 @@ def: "The process in which a relatively unspecialized cell acquires specialized synonym: "keratinocyte cell differentiation" EXACT [] is_a: GO:0009913 ! epidermal cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000312 ! keratinocyte +intersection_of: RO:0002315 CL:0000312 ! results in acquisition of features of keratinocyte relationship: part_of GO:0043588 ! skin development -relationship: results_in_acquisition_of_features_of CL:0000312 ! keratinocyte +relationship: RO:0002315 CL:0000312 ! results in acquisition of features of keratinocyte [Term] id: GO:0030217 @@ -64307,8 +64145,8 @@ synonym: "T-lymphocyte differentiation" EXACT [] is_a: GO:0030098 ! lymphocyte differentiation is_a: GO:0042110 ! T cell activation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000084 ! T cell -relationship: results_in_acquisition_of_features_of CL:0000084 ! T cell +intersection_of: RO:0002315 CL:0000084 ! results in acquisition of features of T cell +relationship: RO:0002315 CL:0000084 ! results in acquisition of features of T cell [Term] id: GO:0030218 @@ -64322,9 +64160,9 @@ synonym: "red blood cell differentiation" EXACT [CL:0000232] xref: Wikipedia:Erythropoiesis is_a: GO:0030099 ! myeloid cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000232 ! erythrocyte +intersection_of: RO:0002315 CL:0000232 ! results in acquisition of features of erythrocyte relationship: part_of GO:0034101 ! erythrocyte homeostasis -relationship: results_in_acquisition_of_features_of CL:0000232 ! erythrocyte +relationship: RO:0002315 CL:0000232 ! results in acquisition of features of erythrocyte [Term] id: GO:0030219 @@ -64334,8 +64172,8 @@ def: "The process in which a myeloid precursor cell acquires specializes feature synonym: "megakaryocyte cell differentiation" EXACT [] is_a: GO:0030099 ! myeloid cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000556 ! megakaryocyte -relationship: results_in_acquisition_of_features_of CL:0000556 ! megakaryocyte +intersection_of: RO:0002315 CL:0000556 ! results in acquisition of features of megakaryocyte +relationship: RO:0002315 CL:0000556 ! results in acquisition of features of megakaryocyte [Term] id: GO:0030220 @@ -64346,9 +64184,9 @@ synonym: "platelet extrusion" EXACT systematic_synonym [GOC:curators] is_a: GO:0030099 ! myeloid cell differentiation is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity CL:0000233 ! platelet +intersection_of: RO:0002297 CL:0000233 ! results in formation of anatomical entity platelet relationship: part_of GO:0036344 ! platelet morphogenesis -relationship: results_in_formation_of_anatomical_entity CL:0000233 ! platelet +relationship: RO:0002297 CL:0000233 ! results in formation of anatomical entity platelet [Term] id: GO:0030223 @@ -64360,8 +64198,8 @@ synonym: "neutrophil granulocyte differentiation" EXACT [GOC:yaf] synonym: "neutrophil granulocytopoiesis" EXACT [GOC:yaf] is_a: GO:0030851 ! granulocyte differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000775 ! neutrophil -relationship: results_in_acquisition_of_features_of CL:0000775 ! neutrophil +intersection_of: RO:0002315 CL:0000775 ! results in acquisition of features of neutrophil +relationship: RO:0002315 CL:0000775 ! results in acquisition of features of neutrophil [Term] id: GO:0030224 @@ -64372,8 +64210,8 @@ synonym: "monocyte cell differentiation" EXACT [] is_a: GO:0002573 ! myeloid leukocyte differentiation is_a: GO:1903131 ! mononuclear cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000576 ! monocyte -relationship: results_in_acquisition_of_features_of CL:0000576 ! monocyte +intersection_of: RO:0002315 CL:0000576 ! results in acquisition of features of monocyte +relationship: RO:0002315 CL:0000576 ! results in acquisition of features of monocyte [Term] id: GO:0030225 @@ -64384,8 +64222,8 @@ synonym: "macrophage cell differentiation" EXACT [] is_a: GO:0002573 ! myeloid leukocyte differentiation is_a: GO:1903131 ! mononuclear cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000235 ! macrophage -relationship: results_in_acquisition_of_features_of CL:0000235 ! macrophage +intersection_of: RO:0002315 CL:0000235 ! results in acquisition of features of macrophage +relationship: RO:0002315 CL:0000235 ! results in acquisition of features of macrophage [Term] id: GO:0030239 @@ -64395,11 +64233,11 @@ def: "Formation of myofibrils, the repeating units of striated muscle." [GOC:mah is_a: GO:0010927 ! cellular component assembly involved in morphogenesis is_a: GO:0031032 ! actomyosin structure organization is_a: GO:0097435 ! supramolecular fiber organization -is_a: GO:0140694 ! non-membrane-bounded organelle assembly +is_a: GO:0140694 ! membraneless organelle assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0030016 ! myofibril +intersection_of: RO:0002588 GO:0030016 ! results in assembly of myofibril relationship: part_of GO:0055002 ! striated muscle cell development -relationship: results_in_assembly_of GO:0030016 ! myofibril +relationship: RO:0002588 GO:0030016 ! results in assembly of myofibril [Term] id: GO:0030243 @@ -64410,8 +64248,8 @@ def: "The chemical reactions and pathways involving cellulose, a linear beta1-4 synonym: "cellulose metabolism" EXACT [] is_a: GO:0051273 ! beta-glucan metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:18246 ! (1->4)-beta-D-glucan -relationship: has_primary_input_or_output CHEBI:18246 ! (1->4)-beta-D-glucan +intersection_of: RO:0004007 CHEBI:18246 ! has primary input or output (1->4)-beta-D-glucan +relationship: RO:0004007 CHEBI:18246 ! has primary input or output (1->4)-beta-D-glucan [Term] id: GO:0030244 @@ -64427,8 +64265,8 @@ xref: MetaCyc:PWY-1001 is_a: GO:0030243 ! cellulose metabolic process is_a: GO:0051274 ! beta-glucan biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:18246 ! (1->4)-beta-D-glucan -relationship: has_primary_output CHEBI:18246 ! (1->4)-beta-D-glucan +intersection_of: RO:0004008 CHEBI:18246 ! has primary output (1->4)-beta-D-glucan +relationship: RO:0004008 CHEBI:18246 ! has primary output (1->4)-beta-D-glucan [Term] id: GO:0030245 @@ -64442,8 +64280,8 @@ synonym: "cellulose degradation" EXACT [] is_a: GO:0030243 ! cellulose metabolic process is_a: GO:0051275 ! beta-glucan catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:18246 ! (1->4)-beta-D-glucan -relationship: has_primary_input CHEBI:18246 ! (1->4)-beta-D-glucan +intersection_of: RO:0004009 CHEBI:18246 ! has primary input (1->4)-beta-D-glucan +relationship: RO:0004009 CHEBI:18246 ! has primary input (1->4)-beta-D-glucan [Term] id: GO:0030246 @@ -64463,8 +64301,8 @@ synonym: "selectin" RELATED [] synonym: "sugar binding" EXACT [] is_a: GO:0005488 ! binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:16646 ! carbohydrate -relationship: has_primary_input CHEBI:16646 ! carbohydrate +intersection_of: RO:0004009 CHEBI:16646 ! has primary input carbohydrate +relationship: RO:0004009 CHEBI:16646 ! has primary input carbohydrate [Term] id: GO:0030247 @@ -64475,8 +64313,8 @@ def: "Binding to a polysaccharide, a polymer of many (typically more than 10) mo synonym: "polysaccharide assembly with MHC class II protein complex" NARROW [] is_a: GO:0030246 ! carbohydrate binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:18154 ! polysaccharide -relationship: has_primary_input CHEBI:18154 ! polysaccharide +intersection_of: RO:0004009 CHEBI:18154 ! has primary input polysaccharide +relationship: RO:0004009 CHEBI:18154 ! has primary input polysaccharide [Term] id: GO:0030248 @@ -64485,8 +64323,8 @@ namespace: molecular_function def: "Binding to cellulose." [GOC:mah] is_a: GO:0030247 ! polysaccharide binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:18246 ! (1->4)-beta-D-glucan -relationship: has_primary_input CHEBI:18246 ! (1->4)-beta-D-glucan +intersection_of: RO:0004009 CHEBI:18246 ! has primary input (1->4)-beta-D-glucan +relationship: RO:0004009 CHEBI:18246 ! has primary input (1->4)-beta-D-glucan [Term] id: GO:0030252 @@ -64547,8 +64385,8 @@ synonym: "regulation of bone biosynthesis" EXACT [] synonym: "regulation of bone formation" EXACT [] is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001503 ! ossification -relationship: regulates GO:0001503 ! ossification +intersection_of: RO:0002211 GO:0001503 ! regulates (processual) ossification +relationship: RO:0002211 GO:0001503 ! regulates (processual) ossification [Term] id: GO:0030279 @@ -64564,8 +64402,8 @@ synonym: "negative regulation of bone formation" EXACT [] is_a: GO:0030278 ! regulation of ossification is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001503 ! ossification -relationship: negatively_regulates GO:0001503 ! ossification +intersection_of: RO:0002212 GO:0001503 ! negatively regulates ossification +relationship: RO:0002212 GO:0001503 ! negatively regulates ossification [Term] id: GO:0030282 @@ -64575,9 +64413,9 @@ def: "The deposition of hydroxyapatite, a form of calcium phosphate with the for synonym: "bone calcification" NARROW [] is_a: GO:0031214 ! biomineral tissue development intersection_of: GO:0031214 ! biomineral tissue development -intersection_of: results_in_maturation_of UBERON:0001474 ! bone element +intersection_of: RO:0002299 UBERON:0001474 ! results in maturation of bone element relationship: part_of GO:0001503 ! ossification -relationship: results_in_maturation_of UBERON:0001474 ! bone element +relationship: RO:0002299 UBERON:0001474 ! results in maturation of bone element [Term] id: GO:0030307 @@ -64593,8 +64431,8 @@ is_a: GO:0001558 ! regulation of cell growth is_a: GO:0045927 ! positive regulation of growth is_a: GO:0048522 ! positive regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0016049 ! cell growth -relationship: positively_regulates GO:0016049 ! cell growth +intersection_of: RO:0002213 GO:0016049 ! positively regulates cell growth +relationship: RO:0002213 GO:0016049 ! positively regulates cell growth [Term] id: GO:0030308 @@ -64609,8 +64447,8 @@ is_a: GO:0001558 ! regulation of cell growth is_a: GO:0045926 ! negative regulation of growth is_a: GO:0048523 ! negative regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0016049 ! cell growth -relationship: negatively_regulates GO:0016049 ! cell growth +intersection_of: RO:0002212 GO:0016049 ! negatively regulates cell growth +relationship: RO:0002212 GO:0016049 ! negatively regulates cell growth [Term] id: GO:0030312 @@ -64623,7 +64461,7 @@ subset: goslim_drosophila subset: goslim_generic subset: goslim_pir subset: goslim_plant -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of CL:0000000 ! cell relationship: part_of GO:0071944 ! cell periphery @@ -64635,8 +64473,8 @@ def: "The process in which a relatively unspecialized monocyte acquires the spec synonym: "osteoclast cell differentiation" EXACT [] is_a: GO:0002573 ! myeloid leukocyte differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000092 ! osteoclast -relationship: results_in_acquisition_of_features_of CL:0000092 ! osteoclast +intersection_of: RO:0002315 CL:0000092 ! results in acquisition of features of osteoclast +relationship: RO:0002315 CL:0000092 ! results in acquisition of features of osteoclast [Term] id: GO:0030317 @@ -64656,8 +64494,8 @@ is_a: GO:0060285 ! cilium-dependent cell motility is_a: GO:0060294 ! cilium movement involved in cell motility is_a: GO:0097722 ! sperm motility intersection_of: GO:0060285 ! cilium-dependent cell motility -intersection_of: results_in_movement_of CL:0000019 ! sperm -relationship: results_in_movement_of CL:0000019 ! sperm +intersection_of: RO:0002565 CL:0000019 ! results in movement of sperm +relationship: RO:0002565 CL:0000019 ! results in movement of sperm [Term] id: GO:0030318 @@ -64668,8 +64506,8 @@ synonym: "melanocyte cell differentiation" EXACT [] synonym: "melanophore differentiation" EXACT [] is_a: GO:0050931 ! pigment cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000148 ! melanocyte -relationship: results_in_acquisition_of_features_of CL:0000148 ! melanocyte +intersection_of: RO:0002315 CL:0000148 ! results in acquisition of features of melanocyte +relationship: RO:0002315 CL:0000148 ! results in acquisition of features of melanocyte [Term] id: GO:0030323 @@ -64679,8 +64517,8 @@ def: "The process whose specific outcome is the progression of the respiratory t is_a: GO:0035295 ! tube development is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000117 ! respiratory tube -relationship: results_in_development_of UBERON:0000117 ! respiratory tube +intersection_of: RO:0002296 UBERON:0000117 ! results in development of respiratory tube +relationship: RO:0002296 UBERON:0000117 ! results in development of respiratory tube [Term] id: GO:0030324 @@ -64689,10 +64527,10 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the esophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax." [GOC:jid, UBERON:0002048] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002048 ! lung +intersection_of: RO:0002296 UBERON:0002048 ! results in development of lung relationship: part_of GO:0030323 ! respiratory tube development relationship: part_of GO:0060541 ! respiratory system development -relationship: results_in_development_of UBERON:0002048 ! lung +relationship: RO:0002296 UBERON:0002048 ! results in development of lung [Term] id: GO:0030325 @@ -64702,9 +64540,9 @@ def: "The process whose specific outcome is the progression of the adrenal gland synonym: "interrenal gland" RELATED [] is_a: GO:0048732 ! gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002369 ! adrenal gland +intersection_of: RO:0002296 UBERON:0002369 ! results in development of adrenal gland relationship: part_of GO:0035270 ! endocrine system development -relationship: results_in_development_of UBERON:0002369 ! adrenal gland +relationship: RO:0002296 UBERON:0002369 ! results in development of adrenal gland [Term] id: GO:0030334 @@ -64713,9 +64551,9 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cell migration." [GOC:go_curators] is_a: GO:2000145 ! regulation of cell motility intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0016477 ! cell migration +intersection_of: RO:0002211 GO:0016477 ! regulates (processual) cell migration relationship: never_in_taxon NCBITaxon:4890 ! Ascomycota -relationship: regulates GO:0016477 ! cell migration +relationship: RO:0002211 GO:0016477 ! regulates (processual) cell migration [Term] id: GO:0030335 @@ -64730,8 +64568,8 @@ synonym: "upregulation of cell migration" EXACT [] is_a: GO:0030334 ! regulation of cell migration is_a: GO:2000147 ! positive regulation of cell motility intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0016477 ! cell migration -relationship: positively_regulates GO:0016477 ! cell migration +intersection_of: RO:0002213 GO:0016477 ! positively regulates cell migration +relationship: RO:0002213 GO:0016477 ! positively regulates cell migration [Term] id: GO:0030336 @@ -64745,8 +64583,8 @@ synonym: "inhibition of cell migration" NARROW [] is_a: GO:0030334 ! regulation of cell migration is_a: GO:2000146 ! negative regulation of cell motility intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0016477 ! cell migration -relationship: negatively_regulates GO:0016477 ! cell migration +intersection_of: RO:0002212 GO:0016477 ! negatively regulates cell migration +relationship: RO:0002212 GO:0016477 ! negatively regulates cell migration [Term] id: GO:0030397 @@ -64759,8 +64597,8 @@ synonym: "membrane degradation" EXACT [] is_a: GO:0022411 ! cellular component disassembly is_a: GO:0061024 ! membrane organization intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0016020 ! membrane -relationship: results_in_disassembly_of GO:0016020 ! membrane +intersection_of: RO:0002590 GO:0016020 ! results in disassembly of membrane +relationship: RO:0002590 GO:0016020 ! results in disassembly of membrane [Term] id: GO:0030421 @@ -64831,8 +64669,8 @@ synonym: "transport of nucleus, microtubule-mediated" EXACT [] is_a: GO:0007097 ! nuclear migration is_a: GO:0072384 ! organelle transport along microtubule intersection_of: GO:0007097 ! nuclear migration -intersection_of: results_in_transport_along GO:0015630 ! microtubule cytoskeleton -relationship: results_in_transport_along GO:0015630 ! microtubule cytoskeleton +intersection_of: RO:0002341 GO:0015630 ! results in transport along microtubule cytoskeleton +relationship: RO:0002341 GO:0015630 ! results in transport along microtubule cytoskeleton [Term] id: GO:0030485 @@ -64852,8 +64690,8 @@ def: "Any process that modulates the frequency, rate or extent of bone mineraliz is_a: GO:0030278 ! regulation of ossification is_a: GO:0070167 ! regulation of biomineral tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030282 ! bone mineralization -relationship: regulates GO:0030282 ! bone mineralization +intersection_of: RO:0002211 GO:0030282 ! regulates (processual) bone mineralization +relationship: RO:0002211 GO:0030282 ! regulates (processual) bone mineralization [Term] id: GO:0030501 @@ -64869,8 +64707,8 @@ is_a: GO:0030500 ! regulation of bone mineralization is_a: GO:0045778 ! positive regulation of ossification is_a: GO:0070169 ! positive regulation of biomineral tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030282 ! bone mineralization -relationship: positively_regulates GO:0030282 ! bone mineralization +intersection_of: RO:0002213 GO:0030282 ! positively regulates bone mineralization +relationship: RO:0002213 GO:0030282 ! positively regulates bone mineralization [Term] id: GO:0030502 @@ -64885,29 +64723,8 @@ is_a: GO:0030279 ! negative regulation of ossification is_a: GO:0030500 ! regulation of bone mineralization is_a: GO:0070168 ! negative regulation of biomineral tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030282 ! bone mineralization -relationship: negatively_regulates GO:0030282 ! bone mineralization - -[Term] -id: GO:0030518 -name: nuclear receptor-mediated steroid hormone signaling pathway -namespace: biological_process -def: "A nuclear receptor-mediated signaling pathway initiated by a steroid binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription." [GOC:mah, GOC:signaling] -synonym: "intracellular steroid hormone receptor signaling pathway" EXACT [] -synonym: "steroid hormone receptor signaling pathway" BROAD [GOC:bf] -synonym: "steroid hormone receptor signalling pathway" BROAD [GOC:bf] -is_a: GO:0043401 ! steroid hormone receptor signaling pathway -is_a: GO:0141193 ! nuclear receptor-mediated signaling pathway - -[Term] -id: GO:0030522 -name: intracellular receptor signaling pathway -namespace: biological_process -def: "The series of molecular signals initiated by a ligand binding to a receptor located within a cell." [GOC:bf, GOC:mah] -synonym: "intracellular receptor mediated signaling pathway" EXACT [] -synonym: "intracellular receptor-mediated signaling pathway" EXACT [] -synonym: "intracellular receptor-mediated signalling pathway" EXACT [] -is_a: GO:0035556 ! intracellular signal transduction +intersection_of: RO:0002212 GO:0030282 ! negatively regulates bone mineralization +relationship: RO:0002212 GO:0030282 ! negatively regulates bone mineralization [Term] id: GO:0030539 @@ -64918,9 +64735,9 @@ synonym: "male genital development" EXACT [] is_a: GO:0048806 ! genitalia development is_a: GO:0061458 ! reproductive system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000079 ! male reproductive system +intersection_of: RO:0002296 UBERON:0000079 ! results in development of male reproductive system relationship: part_of GO:0046661 ! male sex differentiation -relationship: results_in_development_of UBERON:0000079 ! male reproductive system +relationship: RO:0002296 UBERON:0000079 ! results in development of male reproductive system [Term] id: GO:0030540 @@ -64939,8 +64756,8 @@ def: "Binding to an adenyl nucleotide, an adenosine esterified with (ortho)phosp subset: goslim_chembl is_a: GO:0017076 ! purine nucleotide binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:61293 ! adenyl nucleotide -relationship: has_primary_input CHEBI:61293 ! adenyl nucleotide +intersection_of: RO:0004009 CHEBI:61293 ! has primary input adenyl nucleotide +relationship: RO:0004009 CHEBI:61293 ! has primary input adenyl nucleotide [Term] id: GO:0030573 @@ -64956,8 +64773,8 @@ synonym: "cholate catabolic process" NARROW [] is_a: GO:0008206 ! bile acid metabolic process is_a: GO:0072329 ! monocarboxylic acid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:36235 ! bile acid anion -relationship: has_primary_input CHEBI:36235 ! bile acid anion +intersection_of: RO:0004009 CHEBI:36235 ! has primary input bile acid anion +relationship: RO:0004009 CHEBI:36235 ! has primary input bile acid anion [Term] id: GO:0030574 @@ -64970,8 +64787,8 @@ synonym: "collagen degradation" EXACT [] is_a: GO:0009056 ! catabolic process is_a: GO:0032963 ! collagen metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input GO:0005581 ! collagen trimer -relationship: has_primary_input GO:0005581 ! collagen trimer +intersection_of: RO:0004009 GO:0005581 ! has primary input collagen trimer +relationship: RO:0004009 GO:0005581 ! has primary input collagen trimer [Term] id: GO:0030593 @@ -64981,8 +64798,8 @@ def: "The directed movement of a neutrophil cell, the most numerous polymorphonu is_a: GO:0071621 ! granulocyte chemotaxis is_a: GO:1990266 ! neutrophil migration intersection_of: GO:0006935 ! chemotaxis -intersection_of: results_in_movement_of CL:0000775 ! neutrophil -relationship: results_in_movement_of CL:0000775 ! neutrophil +intersection_of: RO:0002565 CL:0000775 ! results in movement of neutrophil +relationship: RO:0002565 CL:0000775 ! results in movement of neutrophil [Term] id: GO:0030594 @@ -64992,7 +64809,7 @@ def: "Combining with a neurotransmitter and transmitting the signal to initiate comment: A strict definition of neurotransmitter receptor activity would limit its use to receptor activity at the postsynaptic membrane as part of synaptic transmission, but we recognize that usage is often much broader than this. For the strict use case, please see 'postsynaptic neurotransmitter receptor activity' is_a: GO:0038023 ! signaling receptor activity relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa [Term] id: GO:0030595 @@ -65004,8 +64821,8 @@ synonym: "leucocyte chemotaxis" EXACT [] is_a: GO:0050900 ! leukocyte migration is_a: GO:0060326 ! cell chemotaxis intersection_of: GO:0006935 ! chemotaxis -intersection_of: results_in_movement_of CL:0000738 ! leukocyte -relationship: results_in_movement_of CL:0000738 ! leukocyte +intersection_of: RO:0002565 CL:0000738 ! results in movement of leukocyte +relationship: RO:0002565 CL:0000738 ! results in movement of leukocyte [Term] id: GO:0030642 @@ -65017,8 +64834,8 @@ synonym: "sulphate ion homeostasis" BROAD [] is_a: GO:0055063 ! sulfate ion homeostasis is_a: GO:0055082 ! intracellular chemical homeostasis intersection_of: GO:0055082 ! intracellular chemical homeostasis -intersection_of: regulates_levels_of CHEBI:16189 ! sulfate -relationship: regulates_levels_of CHEBI:16189 ! sulfate +intersection_of: RO:0002332 CHEBI:16189 ! regulates levels of sulfate +relationship: RO:0002332 CHEBI:16189 ! regulates levels of sulfate property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24514" xsd:anyURI [Term] @@ -65033,8 +64850,8 @@ synonym: "intracellular Pi homeostasis" EXACT [] is_a: GO:0055062 ! phosphate ion homeostasis is_a: GO:0055082 ! intracellular chemical homeostasis intersection_of: GO:0019725 ! cellular homeostasis -intersection_of: regulates_levels_of CHEBI:43474 ! hydrogenphosphate -relationship: regulates_levels_of CHEBI:43474 ! hydrogenphosphate +intersection_of: RO:0002332 CHEBI:43474 ! regulates levels of hydrogenphosphate +relationship: RO:0002332 CHEBI:43474 ! regulates levels of hydrogenphosphate property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26429" xsd:anyURI [Term] @@ -65048,10 +64865,10 @@ is_a: GO:0006007 ! glucose catabolic process is_a: GO:0006113 ! fermentation is_a: GO:0019605 ! butyrate metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:4167 ! D-glucopyranose -intersection_of: has_primary_output CHEBI:17968 ! butyrate -relationship: has_primary_input CHEBI:4167 ! D-glucopyranose -relationship: has_primary_output CHEBI:17968 ! butyrate +intersection_of: RO:0004008 CHEBI:17968 ! has primary output butyrate +intersection_of: RO:0004009 CHEBI:4167 ! has primary input D-glucopyranose +relationship: RO:0004008 CHEBI:17968 ! has primary output butyrate +relationship: RO:0004009 CHEBI:4167 ! has primary input D-glucopyranose [Term] id: GO:0030658 @@ -65123,11 +64940,11 @@ def: "Construction of the eggshell, a product of the somatic follicle cell epith is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005079 ! eggshell +intersection_of: RO:0002297 UBERON:0005079 ! results in formation of anatomical entity eggshell relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa relationship: part_of GO:0048477 ! oogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005079 ! eggshell +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0002297 UBERON:0005079 ! results in formation of anatomical entity eggshell [Term] id: GO:0030704 @@ -65139,8 +64956,8 @@ is_a: GO:0010927 ! cellular component assembly involved in morphogenesis is_a: GO:0035803 ! egg coat formation is_a: GO:0085029 ! extracellular matrix assembly intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003125 ! vitelline membrane -relationship: results_in_formation_of_anatomical_entity UBERON:0003125 ! vitelline membrane +intersection_of: RO:0002297 UBERON:0003125 ! results in formation of anatomical entity vitelline membrane +relationship: RO:0002297 UBERON:0003125 ! results in formation of anatomical entity vitelline membrane [Term] id: GO:0030705 @@ -65151,8 +64968,8 @@ subset: goslim_chembl subset: goslim_drosophila is_a: GO:0046907 ! intracellular transport intersection_of: GO:0046907 ! intracellular transport -intersection_of: results_in_transport_along GO:0099513 ! polymeric cytoskeletal fiber -relationship: results_in_transport_along GO:0099513 ! polymeric cytoskeletal fiber +intersection_of: RO:0002341 GO:0099513 ! results in transport along polymeric cytoskeletal fiber +relationship: RO:0002341 GO:0099513 ! results in transport along polymeric cytoskeletal fiber [Term] id: GO:0030707 @@ -65162,11 +64979,11 @@ def: "The process that occurs during oogenesis involving the ovarian follicle ce is_a: GO:0002064 ! epithelial cell development is_a: GO:0003006 ! developmental process involved in reproduction intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:0000477 ! follicle cell of egg chamber +intersection_of: RO:0002296 CL:0000477 ! results in development of follicle cell of egg chamber relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of GO:0048477 ! oogenesis -relationship: results_in_development_of CL:0000477 ! follicle cell of egg chamber +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda +relationship: RO:0002296 CL:0000477 ! results in development of follicle cell of egg chamber [Term] id: GO:0030718 @@ -65175,8 +64992,8 @@ namespace: biological_process def: "Any process by which an organism or tissue maintains a population of germ-line stem cells." [ISBN:0879694238] is_a: GO:0019827 ! stem cell population maintenance intersection_of: GO:0098727 ! maintenance of cell number -intersection_of: acts_on_population_of CL:0000014 ! germ line stem cell -relationship: acts_on_population_of CL:0000014 ! germ line stem cell +intersection_of: RO:0012003 CL:0000014 ! acts on population of germ line stem cell +relationship: RO:0012003 CL:0000014 ! acts on population of germ line stem cell [Term] id: GO:0030720 @@ -65193,11 +65010,11 @@ synonym: "oogenesis, establishment and maintenance of oocyte localization" EXACT synonym: "oogenesis, oocyte localization" EXACT [] is_a: GO:0051674 ! localization of cell intersection_of: GO:0051179 ! localization -intersection_of: has_primary_input CL:0000023 ! oocyte -relationship: has_primary_input CL:0000023 ! oocyte +intersection_of: RO:0004009 CL:0000023 ! has primary input oocyte relationship: in_taxon NCBITaxon:50557 {all_only="true"} ! Insecta -relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of GO:0007293 ! germarium-derived egg chamber formation +relationship: RO:0002160 NCBITaxon:50557 ! only in taxon Insecta +relationship: RO:0004009 CL:0000023 ! has primary input oocyte [Term] id: GO:0030808 @@ -65211,8 +65028,8 @@ synonym: "regulation of nucleotide synthesis" EXACT [] is_a: GO:0006140 ! regulation of nucleotide metabolic process is_a: GO:0009889 ! regulation of biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009165 ! nucleotide biosynthetic process -relationship: regulates GO:0009165 ! nucleotide biosynthetic process +intersection_of: RO:0002211 GO:0009165 ! regulates (processual) nucleotide biosynthetic process +relationship: RO:0002211 GO:0009165 ! regulates (processual) nucleotide biosynthetic process [Term] id: GO:0030809 @@ -65231,8 +65048,8 @@ is_a: GO:0009890 ! negative regulation of biosynthetic process is_a: GO:0030808 ! regulation of nucleotide biosynthetic process is_a: GO:0045980 ! negative regulation of nucleotide metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009165 ! nucleotide biosynthetic process -relationship: negatively_regulates GO:0009165 ! nucleotide biosynthetic process +intersection_of: RO:0002212 GO:0009165 ! negatively regulates nucleotide biosynthetic process +relationship: RO:0002212 GO:0009165 ! negatively regulates nucleotide biosynthetic process [Term] id: GO:0030810 @@ -65252,8 +65069,8 @@ is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:0030808 ! regulation of nucleotide biosynthetic process is_a: GO:0045981 ! positive regulation of nucleotide metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009165 ! nucleotide biosynthetic process -relationship: positively_regulates GO:0009165 ! nucleotide biosynthetic process +intersection_of: RO:0002213 GO:0009165 ! positively regulates nucleotide biosynthetic process +relationship: RO:0002213 GO:0009165 ! positively regulates nucleotide biosynthetic process [Term] id: GO:0030811 @@ -65266,8 +65083,8 @@ synonym: "regulation of nucleotide degradation" EXACT [] is_a: GO:0006140 ! regulation of nucleotide metabolic process is_a: GO:0009894 ! regulation of catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009166 ! nucleotide catabolic process -relationship: regulates GO:0009166 ! nucleotide catabolic process +intersection_of: RO:0002211 GO:0009166 ! regulates (processual) nucleotide catabolic process +relationship: RO:0002211 GO:0009166 ! regulates (processual) nucleotide catabolic process [Term] id: GO:0030812 @@ -65285,8 +65102,8 @@ is_a: GO:0009895 ! negative regulation of catabolic process is_a: GO:0030811 ! regulation of nucleotide catabolic process is_a: GO:0045980 ! negative regulation of nucleotide metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009166 ! nucleotide catabolic process -relationship: negatively_regulates GO:0009166 ! nucleotide catabolic process +intersection_of: RO:0002212 GO:0009166 ! negatively regulates nucleotide catabolic process +relationship: RO:0002212 GO:0009166 ! negatively regulates nucleotide catabolic process [Term] id: GO:0030813 @@ -65305,8 +65122,8 @@ is_a: GO:0009896 ! positive regulation of catabolic process is_a: GO:0030811 ! regulation of nucleotide catabolic process is_a: GO:0045981 ! positive regulation of nucleotide metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009166 ! nucleotide catabolic process -relationship: positively_regulates GO:0009166 ! nucleotide catabolic process +intersection_of: RO:0002213 GO:0009166 ! positively regulates nucleotide catabolic process +relationship: RO:0002213 GO:0009166 ! positively regulates nucleotide catabolic process [Term] id: GO:0030850 @@ -65317,9 +65134,9 @@ synonym: "prostate development" EXACT [] is_a: GO:0048608 ! reproductive structure development is_a: GO:0048732 ! gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002367 ! prostate gland +intersection_of: RO:0002296 UBERON:0002367 ! results in development of prostate gland relationship: part_of GO:0001655 ! urogenital system development -relationship: results_in_development_of UBERON:0002367 ! prostate gland +relationship: RO:0002296 UBERON:0002367 ! results in development of prostate gland [Term] id: GO:0030851 @@ -65329,8 +65146,8 @@ def: "The process in which a myeloid precursor cell acquires the specialized fea synonym: "granulocyte cell differentiation" EXACT [] is_a: GO:0002573 ! myeloid leukocyte differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000094 ! granulocyte -relationship: results_in_acquisition_of_features_of CL:0000094 ! granulocyte +intersection_of: RO:0002315 CL:0000094 ! results in acquisition of features of granulocyte +relationship: RO:0002315 CL:0000094 ! results in acquisition of features of granulocyte [Term] id: GO:0030852 @@ -65339,8 +65156,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of granulocyte differentiation." [GOC:mah] is_a: GO:0002761 ! regulation of myeloid leukocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030851 ! granulocyte differentiation -relationship: regulates GO:0030851 ! granulocyte differentiation +intersection_of: RO:0002211 GO:0030851 ! regulates (processual) granulocyte differentiation +relationship: RO:0002211 GO:0030851 ! regulates (processual) granulocyte differentiation [Term] id: GO:0030853 @@ -65354,8 +65171,8 @@ synonym: "inhibition of granulocyte differentiation" NARROW [] is_a: GO:0002762 ! negative regulation of myeloid leukocyte differentiation is_a: GO:0030852 ! regulation of granulocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030851 ! granulocyte differentiation -relationship: negatively_regulates GO:0030851 ! granulocyte differentiation +intersection_of: RO:0002212 GO:0030851 ! negatively regulates granulocyte differentiation +relationship: RO:0002212 GO:0030851 ! negatively regulates granulocyte differentiation [Term] id: GO:0030854 @@ -65370,8 +65187,8 @@ synonym: "upregulation of granulocyte differentiation" EXACT [] is_a: GO:0002763 ! positive regulation of myeloid leukocyte differentiation is_a: GO:0030852 ! regulation of granulocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030851 ! granulocyte differentiation -relationship: positively_regulates GO:0030851 ! granulocyte differentiation +intersection_of: RO:0002213 GO:0030851 ! positively regulates granulocyte differentiation +relationship: RO:0002213 GO:0030851 ! positively regulates granulocyte differentiation [Term] id: GO:0030855 @@ -65380,9 +65197,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium." [GOC:ecd, PMID:11839751] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000066 ! epithelial cell +intersection_of: RO:0002315 CL:0000066 ! results in acquisition of features of epithelial cell relationship: part_of GO:0060429 ! epithelium development -relationship: results_in_acquisition_of_features_of CL:0000066 ! epithelial cell +relationship: RO:0002315 CL:0000066 ! results in acquisition of features of epithelial cell [Term] id: GO:0030856 @@ -65392,8 +65209,8 @@ def: "Any process that modulates the frequency, rate or extent of epithelial cel is_a: GO:0045595 ! regulation of cell differentiation is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030855 ! epithelial cell differentiation -relationship: regulates GO:0030855 ! epithelial cell differentiation +intersection_of: RO:0002211 GO:0030855 ! regulates (processual) epithelial cell differentiation +relationship: RO:0002211 GO:0030855 ! regulates (processual) epithelial cell differentiation [Term] id: GO:0030857 @@ -65407,8 +65224,8 @@ synonym: "inhibition of epithelial cell differentiation" NARROW [] is_a: GO:0030856 ! regulation of epithelial cell differentiation is_a: GO:0045596 ! negative regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030855 ! epithelial cell differentiation -relationship: negatively_regulates GO:0030855 ! epithelial cell differentiation +intersection_of: RO:0002212 GO:0030855 ! negatively regulates epithelial cell differentiation +relationship: RO:0002212 GO:0030855 ! negatively regulates epithelial cell differentiation [Term] id: GO:0030858 @@ -65423,8 +65240,8 @@ synonym: "upregulation of epithelial cell differentiation" EXACT [] is_a: GO:0030856 ! regulation of epithelial cell differentiation is_a: GO:0045597 ! positive regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030855 ! epithelial cell differentiation -relationship: positively_regulates GO:0030855 ! epithelial cell differentiation +intersection_of: RO:0002213 GO:0030855 ! positively regulates epithelial cell differentiation +relationship: RO:0002213 GO:0030855 ! positively regulates epithelial cell differentiation [Term] id: GO:0030863 @@ -65453,8 +65270,8 @@ synonym: "cortical cytoskeleton organisation" EXACT [] synonym: "cortical cytoskeleton organization and biogenesis" RELATED [GOC:mah] is_a: GO:0007010 ! cytoskeleton organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0030863 ! cortical cytoskeleton -relationship: results_in_organization_of GO:0030863 ! cortical cytoskeleton +intersection_of: RO:0002592 GO:0030863 ! results in organization of cortical cytoskeleton +relationship: RO:0002592 GO:0030863 ! results in organization of cortical cytoskeleton [Term] id: GO:0030866 @@ -65470,8 +65287,8 @@ synonym: "cortical resistance" RELATED [] is_a: GO:0030036 ! actin cytoskeleton organization is_a: GO:0030865 ! cortical cytoskeleton organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0030864 ! cortical actin cytoskeleton -relationship: results_in_organization_of GO:0030864 ! cortical actin cytoskeleton +intersection_of: RO:0002592 GO:0030864 ! results in organization of cortical actin cytoskeleton +relationship: RO:0002592 GO:0030864 ! results in organization of cortical actin cytoskeleton [Term] id: GO:0030878 @@ -65480,9 +65297,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the thyroid gland over time, from its formation to the mature structure. The thyroid gland is an endoderm-derived gland that produces thyroid hormone." [GOC:dgh] is_a: GO:0048732 ! gland development intersection_of: GO:0048732 ! gland development -intersection_of: results_in_development_of UBERON:0002046 ! thyroid gland +intersection_of: RO:0002296 UBERON:0002046 ! results in development of thyroid gland relationship: part_of GO:0035270 ! endocrine system development -relationship: results_in_development_of UBERON:0002046 ! thyroid gland +relationship: RO:0002296 UBERON:0002046 ! results in development of thyroid gland [Term] id: GO:0030879 @@ -65492,10 +65309,10 @@ def: "The process whose specific outcome is the progression of the mammary gland synonym: "mammogenesis" NARROW [GOC:dph] is_a: GO:0048732 ! gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001911 ! mammary gland +intersection_of: RO:0002296 UBERON:0001911 ! results in development of mammary gland relationship: in_taxon NCBITaxon:40674 {all_only="true"} ! Mammalia -relationship: only_in_taxon NCBITaxon:40674 ! Mammalia -relationship: results_in_development_of UBERON:0001911 ! mammary gland +relationship: RO:0002160 NCBITaxon:40674 ! only in taxon Mammalia +relationship: RO:0002296 UBERON:0001911 ! results in development of mammary gland [Term] id: GO:0030885 @@ -65504,8 +65321,8 @@ namespace: biological_process def: "Any process that modulates the frequency or rate of myeloid dendritic cell activation." [GOC:mah] is_a: GO:0002694 ! regulation of leukocyte activation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001773 ! myeloid dendritic cell activation -relationship: regulates GO:0001773 ! myeloid dendritic cell activation +intersection_of: RO:0002211 GO:0001773 ! regulates (processual) myeloid dendritic cell activation +relationship: RO:0002211 GO:0001773 ! regulates (processual) myeloid dendritic cell activation [Term] id: GO:0030886 @@ -65519,8 +65336,8 @@ synonym: "inhibition of myeloid dendritic cell activation" NARROW [] is_a: GO:0002695 ! negative regulation of leukocyte activation is_a: GO:0030885 ! regulation of myeloid dendritic cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001773 ! myeloid dendritic cell activation -relationship: negatively_regulates GO:0001773 ! myeloid dendritic cell activation +intersection_of: RO:0002212 GO:0001773 ! negatively regulates myeloid dendritic cell activation +relationship: RO:0002212 GO:0001773 ! negatively regulates myeloid dendritic cell activation [Term] id: GO:0030887 @@ -65535,8 +65352,8 @@ synonym: "upregulation of myeloid dendritic cell activation" EXACT [] is_a: GO:0002696 ! positive regulation of leukocyte activation is_a: GO:0030885 ! regulation of myeloid dendritic cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001773 ! myeloid dendritic cell activation -relationship: positively_regulates GO:0001773 ! myeloid dendritic cell activation +intersection_of: RO:0002213 GO:0001773 ! positively regulates myeloid dendritic cell activation +relationship: RO:0002213 GO:0001773 ! positively regulates myeloid dendritic cell activation [Term] id: GO:0030888 @@ -65549,8 +65366,8 @@ synonym: "regulation of B-lymphocyte proliferation" EXACT [] is_a: GO:0050670 ! regulation of lymphocyte proliferation is_a: GO:0050864 ! regulation of B cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042100 ! B cell proliferation -relationship: regulates GO:0042100 ! B cell proliferation +intersection_of: RO:0002211 GO:0042100 ! regulates (processual) B cell proliferation +relationship: RO:0002211 GO:0042100 ! regulates (processual) B cell proliferation [Term] id: GO:0030889 @@ -65568,8 +65385,8 @@ is_a: GO:0030888 ! regulation of B cell proliferation is_a: GO:0050672 ! negative regulation of lymphocyte proliferation is_a: GO:0050869 ! negative regulation of B cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042100 ! B cell proliferation -relationship: negatively_regulates GO:0042100 ! B cell proliferation +intersection_of: RO:0002212 GO:0042100 ! negatively regulates B cell proliferation +relationship: RO:0002212 GO:0042100 ! negatively regulates B cell proliferation [Term] id: GO:0030890 @@ -65588,8 +65405,8 @@ is_a: GO:0030888 ! regulation of B cell proliferation is_a: GO:0050671 ! positive regulation of lymphocyte proliferation is_a: GO:0050871 ! positive regulation of B cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042100 ! B cell proliferation -relationship: positively_regulates GO:0042100 ! B cell proliferation +intersection_of: RO:0002213 GO:0042100 ! positively regulates B cell proliferation +relationship: RO:0002213 GO:0042100 ! positively regulates B cell proliferation [Term] id: GO:0030900 @@ -65599,9 +65416,9 @@ def: "The process whose specific outcome is the progression of the forebrain ove synonym: "prosencephalon development" EXACT [] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001890 ! forebrain +intersection_of: RO:0002296 UBERON:0001890 ! results in development of forebrain relationship: part_of GO:0007420 ! brain development -relationship: results_in_development_of UBERON:0001890 ! forebrain +relationship: RO:0002296 UBERON:0001890 ! results in development of forebrain [Term] id: GO:0030901 @@ -65611,9 +65428,9 @@ def: "The process whose specific outcome is the progression of the midbrain over synonym: "mesencephalon development" EXACT [] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001891 ! midbrain +intersection_of: RO:0002296 UBERON:0001891 ! results in development of midbrain relationship: part_of GO:0007420 ! brain development -relationship: results_in_development_of UBERON:0001891 ! midbrain +relationship: RO:0002296 UBERON:0001891 ! results in development of midbrain [Term] id: GO:0030902 @@ -65623,9 +65440,9 @@ def: "The process whose specific outcome is the progression of the hindbrain ove synonym: "rhombencephalon development" EXACT [] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002028 ! hindbrain +intersection_of: RO:0002296 UBERON:0002028 ! results in development of hindbrain relationship: part_of GO:0007420 ! brain development -relationship: results_in_development_of UBERON:0002028 ! hindbrain +relationship: RO:0002296 UBERON:0002028 ! results in development of hindbrain [Term] id: GO:0030903 @@ -65634,8 +65451,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the notochord over time, from its formation to the mature structure. The notochord is a mesoderm-derived structure located ventral of the developing nerve cord. In vertebrates, the notochord serves as a core around which other mesodermal cells form the vertebrae. In the most primitive chordates, which lack vertebrae, the notochord persists as a substitute for a vertebral column." [GOC:dgh] is_a: GO:0048568 ! embryonic organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002328 ! notochord -relationship: results_in_development_of UBERON:0002328 ! notochord +intersection_of: RO:0002296 UBERON:0002328 ! results in development of notochord +relationship: RO:0002296 UBERON:0002328 ! results in development of notochord [Term] id: GO:0030910 @@ -65644,10 +65461,10 @@ namespace: biological_process def: "The formation of a thickening of the neural ectoderm in the head region of the vertebrate embryo which develops into the olfactory region of the nasal cavity." [GOC:dgh] is_a: GO:0060788 ! ectodermal placode formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003050 ! olfactory placode +intersection_of: RO:0002297 UBERON:0003050 ! results in formation of anatomical entity olfactory placode relationship: part_of GO:0043584 ! nose development relationship: part_of GO:0071699 ! olfactory placode morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0003050 ! olfactory placode +relationship: RO:0002297 UBERON:0003050 ! results in formation of anatomical entity olfactory placode [Term] id: GO:0030916 @@ -65658,9 +65475,9 @@ synonym: "otocyst biosynthesis" EXACT [] synonym: "otocyst formation" EXACT [] is_a: GO:0072175 ! epithelial tube formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003051 ! ear vesicle +intersection_of: RO:0002297 UBERON:0003051 ! results in formation of anatomical entity ear vesicle relationship: part_of GO:0071600 ! otic vesicle morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0003051 ! ear vesicle +relationship: RO:0002297 UBERON:0003051 ! results in formation of anatomical entity ear vesicle [Term] id: GO:0030917 @@ -65674,10 +65491,10 @@ synonym: "MHB development" EXACT [] synonym: "midbrain-hindbrain orgainizer development" EXACT [] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003052 ! midbrain-hindbrain boundary +intersection_of: RO:0002296 UBERON:0003052 ! results in development of midbrain-hindbrain boundary relationship: part_of GO:0007420 ! brain development relationship: part_of GO:0021903 ! rostrocaudal neural tube patterning -relationship: results_in_development_of UBERON:0003052 ! midbrain-hindbrain boundary +relationship: RO:0002296 UBERON:0003052 ! results in development of midbrain-hindbrain boundary [Term] id: GO:0030936 @@ -65708,6 +65525,17 @@ synonym: "cytoskeleton polarization" RELATED [] is_a: GO:0007010 ! cytoskeleton organization is_a: GO:0007163 ! establishment or maintenance of cell polarity +[Term] +id: GO:0030955 +name: potassium ion binding +namespace: molecular_function +def: "Binding to a potassium ion (K+)." [GOC:mah] +synonym: "K ion binding" EXACT [] +is_a: GO:0031420 ! alkali metal ion binding +intersection_of: GO:0005488 ! binding +intersection_of: RO:0004009 CHEBI:29103 ! has primary input potassium(1+) +relationship: RO:0004009 CHEBI:29103 ! has primary input potassium(1+) + [Term] id: GO:0030990 name: intraciliary transport particle @@ -65749,8 +65577,8 @@ def: "The process whose specific outcome is the progression of the pancreas over xref: Wikipedia:Pancreas is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001264 ! pancreas -relationship: results_in_development_of UBERON:0001264 ! pancreas +intersection_of: RO:0002296 UBERON:0001264 ! results in development of pancreas +relationship: RO:0002296 UBERON:0001264 ! results in development of pancreas property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23777" xsd:anyURI [Term] @@ -65760,11 +65588,11 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the exocrine pancreas over time, from its formation to the mature structure. The exocrine pancreas produces and store zymogens of digestive enzymes, such as chymotrypsinogen and trypsinogen in the acinar cells." [GOC:cvs] is_a: GO:0048732 ! gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000017 ! exocrine pancreas +intersection_of: RO:0002296 UBERON:0000017 ! results in development of exocrine pancreas relationship: part_of GO:0031016 ! pancreas development relationship: part_of GO:0035272 ! exocrine system development relationship: part_of GO:0055123 ! digestive system development -relationship: results_in_development_of UBERON:0000017 ! exocrine pancreas +relationship: RO:0002296 UBERON:0000017 ! results in development of exocrine pancreas [Term] id: GO:0031018 @@ -65773,10 +65601,10 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin." [GOC:cvs] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000016 ! endocrine pancreas +intersection_of: RO:0002296 UBERON:0000016 ! results in development of endocrine pancreas relationship: part_of GO:0031016 ! pancreas development relationship: part_of GO:0035270 ! endocrine system development -relationship: results_in_development_of UBERON:0000016 ! endocrine pancreas +relationship: RO:0002296 UBERON:0000016 ! results in development of endocrine pancreas [Term] id: GO:0031022 @@ -65788,8 +65616,8 @@ is_a: GO:0007097 ! nuclear migration is_a: GO:0030048 ! actin filament-based movement is_a: GO:0099515 ! actin filament-based transport intersection_of: GO:0007097 ! nuclear migration -intersection_of: results_in_transport_along GO:0005884 ! actin filament -relationship: results_in_transport_along GO:0005884 ! actin filament +intersection_of: RO:0002341 GO:0005884 ! results in transport along actin filament +relationship: RO:0002341 GO:0005884 ! results in transport along actin filament [Term] id: GO:0031032 @@ -65802,8 +65630,8 @@ synonym: "actomyosin structure organisation" EXACT [] synonym: "actomyosin structure organization and biogenesis" RELATED [GOC:mah] is_a: GO:0030036 ! actin cytoskeleton organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0042641 ! actomyosin -relationship: results_in_organization_of GO:0042641 ! actomyosin +intersection_of: RO:0002592 GO:0042641 ! results in organization of actomyosin +relationship: RO:0002592 GO:0042641 ! results in organization of actomyosin [Term] id: GO:0031045 @@ -65822,10 +65650,10 @@ def: "The process in which the anatomical structures of the hair follicle are ge is_a: GO:0009653 ! anatomical structure morphogenesis is_a: GO:0022405 ! hair cycle process intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002073 ! hair follicle +intersection_of: RO:0002298 UBERON:0002073 ! results in morphogenesis of hair follicle relationship: part_of GO:0001942 ! hair follicle development relationship: part_of GO:0048730 ! epidermis morphogenesis -relationship: results_in_morphogenesis_of UBERON:0002073 ! hair follicle +relationship: RO:0002298 UBERON:0002073 ! results in morphogenesis of hair follicle [Term] id: GO:0031076 @@ -65864,8 +65692,8 @@ def: "The regrowth of a lost or destroyed animal organ." [GOC:mah] is_a: GO:0031099 ! regeneration is_a: GO:0048513 ! animal organ development intersection_of: GO:0031099 ! regeneration -intersection_of: results_in_maturation_of UBERON:0000062 ! organ -relationship: results_in_maturation_of UBERON:0000062 ! organ +intersection_of: RO:0002299 UBERON:0000062 ! results in maturation of organ +relationship: RO:0002299 UBERON:0000062 ! results in maturation of organ [Term] id: GO:0031101 @@ -65874,8 +65702,8 @@ namespace: biological_process def: "The regrowth of fin tissue following its loss or destruction." [GOC:dgh] is_a: GO:0042246 ! tissue regeneration intersection_of: GO:0031099 ! regeneration -intersection_of: results_in_maturation_of UBERON:0002534 ! paired fin -relationship: results_in_maturation_of UBERON:0002534 ! paired fin +intersection_of: RO:0002299 UBERON:0002534 ! results in maturation of paired fin +relationship: RO:0002299 UBERON:0002534 ! results in maturation of paired fin [Term] id: GO:0031109 @@ -65893,8 +65721,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of microtubule polymerization or depolymerization by the addition or removal of tubulin heterodimers from a microtubule." [GOC:mah] is_a: GO:0070507 ! regulation of microtubule cytoskeleton organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0031109 ! microtubule polymerization or depolymerization -relationship: regulates GO:0031109 ! microtubule polymerization or depolymerization +intersection_of: RO:0002211 GO:0031109 ! regulates (processual) microtubule polymerization or depolymerization +relationship: RO:0002211 GO:0031109 ! regulates (processual) microtubule polymerization or depolymerization [Term] id: GO:0031111 @@ -65908,8 +65736,8 @@ synonym: "inhibition of microtubule polymerization or depolymerization" NARROW [ is_a: GO:0031110 ! regulation of microtubule polymerization or depolymerization is_a: GO:0051494 ! negative regulation of cytoskeleton organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0031109 ! microtubule polymerization or depolymerization -relationship: negatively_regulates GO:0031109 ! microtubule polymerization or depolymerization +intersection_of: RO:0002212 GO:0031109 ! negatively regulates microtubule polymerization or depolymerization +relationship: RO:0002212 GO:0031109 ! negatively regulates microtubule polymerization or depolymerization [Term] id: GO:0031112 @@ -65924,8 +65752,8 @@ synonym: "upregulation of microtubule polymerization or depolymerization" EXACT is_a: GO:0031110 ! regulation of microtubule polymerization or depolymerization is_a: GO:0051495 ! positive regulation of cytoskeleton organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0031109 ! microtubule polymerization or depolymerization -relationship: positively_regulates GO:0031109 ! microtubule polymerization or depolymerization +intersection_of: RO:0002213 GO:0031109 ! positively regulates microtubule polymerization or depolymerization +relationship: RO:0002213 GO:0031109 ! positively regulates microtubule polymerization or depolymerization [Term] id: GO:0031113 @@ -65936,8 +65764,8 @@ is_a: GO:0031110 ! regulation of microtubule polymerization or depolymerization is_a: GO:0032271 ! regulation of protein polymerization is_a: GO:1902903 ! regulation of supramolecular fiber organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0046785 ! microtubule polymerization -relationship: regulates GO:0046785 ! microtubule polymerization +intersection_of: RO:0002211 GO:0046785 ! regulates (processual) microtubule polymerization +relationship: RO:0002211 GO:0046785 ! regulates (processual) microtubule polymerization [Term] id: GO:0031114 @@ -65949,8 +65777,8 @@ is_a: GO:0031110 ! regulation of microtubule polymerization or depolymerization is_a: GO:1901879 ! regulation of protein depolymerization is_a: GO:1902903 ! regulation of supramolecular fiber organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007019 ! microtubule depolymerization -relationship: regulates GO:0007019 ! microtubule depolymerization +intersection_of: RO:0002211 GO:0007019 ! regulates (processual) microtubule depolymerization +relationship: RO:0002211 GO:0007019 ! regulates (processual) microtubule depolymerization [Term] id: GO:0031115 @@ -65966,8 +65794,8 @@ is_a: GO:0031113 ! regulation of microtubule polymerization is_a: GO:0032272 ! negative regulation of protein polymerization is_a: GO:1902904 ! negative regulation of supramolecular fiber organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0046785 ! microtubule polymerization -relationship: negatively_regulates GO:0046785 ! microtubule polymerization +intersection_of: RO:0002212 GO:0046785 ! negatively regulates microtubule polymerization +relationship: RO:0002212 GO:0046785 ! negatively regulates microtubule polymerization [Term] id: GO:0031116 @@ -65984,8 +65812,8 @@ is_a: GO:0031113 ! regulation of microtubule polymerization is_a: GO:0032273 ! positive regulation of protein polymerization is_a: GO:1902905 ! positive regulation of supramolecular fiber organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0046785 ! microtubule polymerization -relationship: positively_regulates GO:0046785 ! microtubule polymerization +intersection_of: RO:0002213 GO:0046785 ! positively regulates microtubule polymerization +relationship: RO:0002213 GO:0046785 ! positively regulates microtubule polymerization [Term] id: GO:0031117 @@ -66005,8 +65833,8 @@ is_a: GO:0031114 ! regulation of microtubule depolymerization is_a: GO:1901881 ! positive regulation of protein depolymerization is_a: GO:1902905 ! positive regulation of supramolecular fiber organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007019 ! microtubule depolymerization -relationship: positively_regulates GO:0007019 ! microtubule depolymerization +intersection_of: RO:0002213 GO:0007019 ! positively regulates microtubule depolymerization +relationship: RO:0002213 GO:0007019 ! positively regulates microtubule depolymerization [Term] id: GO:0031122 @@ -66018,8 +65846,8 @@ synonym: "cytoplasmic microtubule organization and biogenesis" RELATED [GOC:mah] is_a: GO:0000226 ! microtubule cytoskeleton organization is_a: GO:0097435 ! supramolecular fiber organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005881 ! cytoplasmic microtubule -relationship: results_in_organization_of GO:0005881 ! cytoplasmic microtubule +intersection_of: RO:0002592 GO:0005881 ! results in organization of cytoplasmic microtubule +relationship: RO:0002592 GO:0005881 ! results in organization of cytoplasmic microtubule [Term] id: GO:0031128 @@ -66080,7 +65908,7 @@ def: "The area of a motile cell closest to the direction of movement." [GOC:pg] subset: goslim_pir synonym: "front of cell" EXACT [] synonym: "leading edge of cell" EXACT [] -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of CL:0000000 ! cell [Term] @@ -66102,7 +65930,7 @@ id: GO:0031256 name: leading edge membrane namespace: cellular_component def: "The portion of the plasma membrane surrounding the leading edge of a motile cell." [GOC:mah] -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of GO:0005886 ! plasma membrane relationship: part_of GO:0031252 ! cell leading edge @@ -66115,8 +65943,8 @@ synonym: "pseudopodium organisation" EXACT [] synonym: "pseudopodium organization and biogenesis" RELATED [GOC:mah] is_a: GO:0120036 ! plasma membrane bounded cell projection organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0031143 ! pseudopodium -relationship: results_in_organization_of GO:0031143 ! pseudopodium +intersection_of: RO:0002592 GO:0031143 ! results in organization of pseudopodium +relationship: RO:0002592 GO:0031143 ! results in organization of pseudopodium [Term] id: GO:0031269 @@ -66128,8 +65956,8 @@ synonym: "pseudopodium formation" RELATED [GOC:dph, GOC:tb] is_a: GO:0031268 ! pseudopodium organization is_a: GO:0120031 ! plasma membrane bounded cell projection assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0031143 ! pseudopodium -relationship: results_in_assembly_of GO:0031143 ! pseudopodium +intersection_of: RO:0002588 GO:0031143 ! results in assembly of pseudopodium +relationship: RO:0002588 GO:0031143 ! results in assembly of pseudopodium [Term] id: GO:0031270 @@ -66139,8 +65967,8 @@ def: "The myosin-based contraction and retraction of a pseudopodium." [GOC:pg] is_a: GO:0022411 ! cellular component disassembly is_a: GO:0031268 ! pseudopodium organization intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0031143 ! pseudopodium -relationship: results_in_disassembly_of GO:0031143 ! pseudopodium +intersection_of: RO:0002590 GO:0031143 ! results in disassembly of pseudopodium +relationship: RO:0002590 GO:0031143 ! results in disassembly of pseudopodium [Term] id: GO:0031272 @@ -66150,8 +65978,8 @@ def: "Any process that modulates the frequency, rate or extent of the assembly o synonym: "regulation of pseudopodium formation" RELATED [] is_a: GO:0120032 ! regulation of plasma membrane bounded cell projection assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0031269 ! pseudopodium assembly -relationship: regulates GO:0031269 ! pseudopodium assembly +intersection_of: RO:0002211 GO:0031269 ! regulates (processual) pseudopodium assembly +relationship: RO:0002211 GO:0031269 ! regulates (processual) pseudopodium assembly [Term] id: GO:0031273 @@ -66166,8 +65994,8 @@ synonym: "negative regulation of pseudopodium formation" RELATED [] is_a: GO:0031272 ! regulation of pseudopodium assembly is_a: GO:0120033 ! negative regulation of plasma membrane bounded cell projection assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0031269 ! pseudopodium assembly -relationship: negatively_regulates GO:0031269 ! pseudopodium assembly +intersection_of: RO:0002212 GO:0031269 ! negatively regulates pseudopodium assembly +relationship: RO:0002212 GO:0031269 ! negatively regulates pseudopodium assembly [Term] id: GO:0031274 @@ -66183,191 +66011,8 @@ synonym: "upregulation of pseudopodium formation" RELATED [] is_a: GO:0031272 ! regulation of pseudopodium assembly is_a: GO:0120034 ! positive regulation of plasma membrane bounded cell projection assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0031269 ! pseudopodium assembly -relationship: positively_regulates GO:0031269 ! pseudopodium assembly - -[Term] -id: GO:0031323 -name: regulation of cellular metabolic process -namespace: biological_process -def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances." [GOC:mah] -comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. -subset: gocheck_do_not_annotate -synonym: "regulation of cellular metabolism" EXACT [] -is_a: GO:0019222 ! regulation of metabolic process -is_a: GO:0050794 ! regulation of cellular process -intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0044237 ! cellular metabolic process -relationship: regulates GO:0044237 ! cellular metabolic process -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI - -[Term] -id: GO:0031324 -name: negative regulation of cellular metabolic process -namespace: biological_process -def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances." [GOC:mah] -comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. -subset: gocheck_do_not_annotate -synonym: "down regulation of cellular metabolic process" EXACT [] -synonym: "down-regulation of cellular metabolic process" EXACT [] -synonym: "downregulation of cellular metabolic process" EXACT [] -synonym: "inhibition of cellular metabolic process" NARROW [] -synonym: "negative regulation of cellular metabolism" EXACT [] -is_a: GO:0009892 ! negative regulation of metabolic process -is_a: GO:0031323 ! regulation of cellular metabolic process -is_a: GO:0048523 ! negative regulation of cellular process -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0044237 ! cellular metabolic process -relationship: negatively_regulates GO:0044237 ! cellular metabolic process -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI - -[Term] -id: GO:0031325 -name: positive regulation of cellular metabolic process -namespace: biological_process -def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances." [GOC:mah] -comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. -subset: gocheck_do_not_annotate -synonym: "activation of cellular metabolic process" NARROW [] -synonym: "positive regulation of cellular metabolism" EXACT [] -synonym: "stimulation of cellular metabolic process" NARROW [] -synonym: "up regulation of cellular metabolic process" EXACT [] -synonym: "up-regulation of cellular metabolic process" EXACT [] -synonym: "upregulation of cellular metabolic process" EXACT [] -is_a: GO:0009893 ! positive regulation of metabolic process -is_a: GO:0031323 ! regulation of cellular metabolic process -is_a: GO:0048522 ! positive regulation of cellular process -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0044237 ! cellular metabolic process -relationship: positively_regulates GO:0044237 ! cellular metabolic process -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI - -[Term] -id: GO:0031326 -name: regulation of cellular biosynthetic process -namespace: biological_process -def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells." [GOC:mah] -comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. -subset: gocheck_do_not_annotate -synonym: "regulation of cellular anabolism" EXACT [] -synonym: "regulation of cellular biosynthesis" EXACT [] -synonym: "regulation of cellular formation" EXACT [] -synonym: "regulation of cellular synthesis" EXACT [] -is_a: GO:0009889 ! regulation of biosynthetic process -is_a: GO:0031323 ! regulation of cellular metabolic process -intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0044249 ! cellular biosynthetic process -relationship: regulates GO:0044249 ! cellular biosynthetic process -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI - -[Term] -id: GO:0031327 -name: negative regulation of cellular biosynthetic process -namespace: biological_process -def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells." [GOC:mah] -comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. -subset: gocheck_do_not_annotate -synonym: "down regulation of cellular biosynthetic process" EXACT [] -synonym: "down-regulation of cellular biosynthetic process" EXACT [] -synonym: "downregulation of cellular biosynthetic process" EXACT [] -synonym: "inhibition of cellular biosynthetic process" NARROW [] -synonym: "negative regulation of cellular anabolism" EXACT [] -synonym: "negative regulation of cellular biosynthesis" EXACT [] -synonym: "negative regulation of cellular formation" EXACT [] -synonym: "negative regulation of cellular synthesis" EXACT [] -is_a: GO:0009890 ! negative regulation of biosynthetic process -is_a: GO:0031324 ! negative regulation of cellular metabolic process -is_a: GO:0031326 ! regulation of cellular biosynthetic process -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0044249 ! cellular biosynthetic process -relationship: negatively_regulates GO:0044249 ! cellular biosynthetic process -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI - -[Term] -id: GO:0031328 -name: positive regulation of cellular biosynthetic process -namespace: biological_process -def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells." [GOC:mah] -comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. -subset: gocheck_do_not_annotate -synonym: "activation of cellular biosynthetic process" NARROW [] -synonym: "positive regulation of cellular anabolism" EXACT [] -synonym: "positive regulation of cellular biosynthesis" EXACT [] -synonym: "positive regulation of cellular formation" EXACT [] -synonym: "positive regulation of cellular synthesis" EXACT [] -synonym: "stimulation of cellular biosynthetic process" NARROW [] -synonym: "up regulation of cellular biosynthetic process" EXACT [] -synonym: "up-regulation of cellular biosynthetic process" EXACT [] -synonym: "upregulation of cellular biosynthetic process" EXACT [] -is_a: GO:0009891 ! positive regulation of biosynthetic process -is_a: GO:0031325 ! positive regulation of cellular metabolic process -is_a: GO:0031326 ! regulation of cellular biosynthetic process -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0044249 ! cellular biosynthetic process -relationship: positively_regulates GO:0044249 ! cellular biosynthetic process -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI - -[Term] -id: GO:0031329 -name: regulation of cellular catabolic process -namespace: biological_process -def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells." [GOC:mah] -comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. -subset: gocheck_do_not_annotate -synonym: "regulation of cellular breakdown" EXACT [] -synonym: "regulation of cellular catabolism" EXACT [] -synonym: "regulation of cellular degradation" EXACT [] -is_a: GO:0009894 ! regulation of catabolic process -is_a: GO:0031323 ! regulation of cellular metabolic process -intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0044248 ! cellular catabolic process -relationship: regulates GO:0044248 ! cellular catabolic process -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI - -[Term] -id: GO:0031330 -name: negative regulation of cellular catabolic process -namespace: biological_process -def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells." [GOC:mah] -comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. -subset: gocheck_do_not_annotate -synonym: "down regulation of cellular catabolic process" EXACT [] -synonym: "down-regulation of cellular catabolic process" EXACT [] -synonym: "downregulation of cellular catabolic process" EXACT [] -synonym: "inhibition of cellular catabolic process" NARROW [] -synonym: "negative regulation of cellular breakdown" EXACT [] -synonym: "negative regulation of cellular catabolism" EXACT [] -synonym: "negative regulation of cellular degradation" EXACT [] -is_a: GO:0009895 ! negative regulation of catabolic process -is_a: GO:0031324 ! negative regulation of cellular metabolic process -is_a: GO:0031329 ! regulation of cellular catabolic process -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0044248 ! cellular catabolic process -relationship: negatively_regulates GO:0044248 ! cellular catabolic process -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI - -[Term] -id: GO:0031331 -name: positive regulation of cellular catabolic process -namespace: biological_process -def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells." [GOC:mah] -comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. -subset: gocheck_do_not_annotate -synonym: "activation of cellular catabolic process" NARROW [] -synonym: "positive regulation of cellular breakdown" EXACT [] -synonym: "positive regulation of cellular catabolism" EXACT [] -synonym: "positive regulation of cellular degradation" EXACT [] -synonym: "stimulation of cellular catabolic process" NARROW [] -synonym: "up regulation of cellular catabolic process" EXACT [] -synonym: "up-regulation of cellular catabolic process" EXACT [] -synonym: "upregulation of cellular catabolic process" EXACT [] -is_a: GO:0009896 ! positive regulation of catabolic process -is_a: GO:0031325 ! positive regulation of cellular metabolic process -is_a: GO:0031329 ! regulation of cellular catabolic process -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0044248 ! cellular catabolic process -relationship: positively_regulates GO:0044248 ! cellular catabolic process -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI +intersection_of: RO:0002213 GO:0031269 ! positively regulates pseudopodium assembly +relationship: RO:0002213 GO:0031269 ! positively regulates pseudopodium assembly [Term] id: GO:0031333 @@ -66382,8 +66027,8 @@ synonym: "negative regulation of protein complex assembly" RELATED [] is_a: GO:0043254 ! regulation of protein-containing complex assembly is_a: GO:0051129 ! negative regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0065003 ! protein-containing complex assembly -relationship: negatively_regulates GO:0065003 ! protein-containing complex assembly +intersection_of: RO:0002212 GO:0065003 ! negatively regulates protein-containing complex assembly +relationship: RO:0002212 GO:0065003 ! negatively regulates protein-containing complex assembly [Term] id: GO:0031334 @@ -66400,9 +66045,9 @@ is_a: GO:0043254 ! regulation of protein-containing complex assembly is_a: GO:0044089 ! positive regulation of cellular component biogenesis is_a: GO:0051130 ! positive regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0065003 ! protein-containing complex assembly -relationship: positively_regulates GO:0044085 ! cellular component biogenesis -relationship: positively_regulates GO:0065003 ! protein-containing complex assembly +intersection_of: RO:0002213 GO:0065003 ! positively regulates protein-containing complex assembly +relationship: RO:0002213 GO:0044085 ! positively regulates cellular component biogenesis +relationship: RO:0002213 GO:0065003 ! positively regulates protein-containing complex assembly [Term] id: GO:0031338 @@ -66412,8 +66057,8 @@ def: "Any process that modulates the frequency, rate or extent of vesicle fusion is_a: GO:0033043 ! regulation of organelle organization is_a: GO:0060627 ! regulation of vesicle-mediated transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006906 ! vesicle fusion -relationship: regulates GO:0006906 ! vesicle fusion +intersection_of: RO:0002211 GO:0006906 ! regulates (processual) vesicle fusion +relationship: RO:0002211 GO:0006906 ! regulates (processual) vesicle fusion [Term] id: GO:0031339 @@ -66428,8 +66073,8 @@ is_a: GO:0010639 ! negative regulation of organelle organization is_a: GO:0031338 ! regulation of vesicle fusion is_a: GO:0051051 ! negative regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006906 ! vesicle fusion -relationship: negatively_regulates GO:0006906 ! vesicle fusion +intersection_of: RO:0002212 GO:0006906 ! negatively regulates vesicle fusion +relationship: RO:0002212 GO:0006906 ! negatively regulates vesicle fusion [Term] id: GO:0031340 @@ -66445,8 +66090,8 @@ is_a: GO:0010638 ! positive regulation of organelle organization is_a: GO:0031338 ! regulation of vesicle fusion is_a: GO:0051050 ! positive regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006906 ! vesicle fusion -relationship: positively_regulates GO:0006906 ! vesicle fusion +intersection_of: RO:0002213 GO:0006906 ! positively regulates vesicle fusion +relationship: RO:0002213 GO:0006906 ! positively regulates vesicle fusion [Term] id: GO:0031341 @@ -66455,8 +66100,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cell killing, the process in which a cell brings about the death of another cell, either in the same or a different organism." [GOC:mah] is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001906 ! cell killing -relationship: regulates GO:0001906 ! cell killing +intersection_of: RO:0002211 GO:0001906 ! regulates (processual) cell killing +relationship: RO:0002211 GO:0001906 ! regulates (processual) cell killing [Term] id: GO:0031342 @@ -66470,8 +66115,8 @@ synonym: "inhibition of cell killing" NARROW [] is_a: GO:0031341 ! regulation of cell killing is_a: GO:0048523 ! negative regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001906 ! cell killing -relationship: negatively_regulates GO:0001906 ! cell killing +intersection_of: RO:0002212 GO:0001906 ! negatively regulates cell killing +relationship: RO:0002212 GO:0001906 ! negatively regulates cell killing [Term] id: GO:0031343 @@ -66486,8 +66131,8 @@ synonym: "upregulation of cell killing" EXACT [] is_a: GO:0031341 ! regulation of cell killing is_a: GO:0048522 ! positive regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001906 ! cell killing -relationship: positively_regulates GO:0001906 ! cell killing +intersection_of: RO:0002213 GO:0001906 ! positively regulates cell killing +relationship: RO:0002213 GO:0001906 ! positively regulates cell killing [Term] id: GO:0031344 @@ -66498,8 +66143,8 @@ synonym: "regulation of cell projection organisation" EXACT [] synonym: "regulation of cell projection organization and biogenesis" RELATED [GOC:mah] is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030030 ! cell projection organization -relationship: regulates GO:0030030 ! cell projection organization +intersection_of: RO:0002211 GO:0030030 ! regulates (processual) cell projection organization +relationship: RO:0002211 GO:0030030 ! regulates (processual) cell projection organization [Term] id: GO:0031345 @@ -66515,8 +66160,8 @@ synonym: "negative regulation of cell projection organization and biogenesis" RE is_a: GO:0031344 ! regulation of cell projection organization is_a: GO:0051129 ! negative regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030030 ! cell projection organization -relationship: negatively_regulates GO:0030030 ! cell projection organization +intersection_of: RO:0002212 GO:0030030 ! negatively regulates cell projection organization +relationship: RO:0002212 GO:0030030 ! negatively regulates cell projection organization [Term] id: GO:0031346 @@ -66533,8 +66178,8 @@ synonym: "upregulation of cell projection organization" EXACT [] is_a: GO:0031344 ! regulation of cell projection organization is_a: GO:0051130 ! positive regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030030 ! cell projection organization -relationship: positively_regulates GO:0030030 ! cell projection organization +intersection_of: RO:0002213 GO:0030030 ! positively regulates cell projection organization +relationship: RO:0002213 GO:0030030 ! positively regulates cell projection organization [Term] id: GO:0031347 @@ -66543,8 +66188,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a defense response." [GOC:mah] is_a: GO:0080134 ! regulation of response to stress intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006952 ! defense response -relationship: regulates GO:0006952 ! defense response +intersection_of: RO:0002211 GO:0006952 ! regulates (processual) defense response +relationship: RO:0002211 GO:0006952 ! regulates (processual) defense response [Term] id: GO:0031348 @@ -66558,8 +66203,8 @@ synonym: "inhibition of defense response" NARROW [] is_a: GO:0031347 ! regulation of defense response is_a: GO:0048585 ! negative regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006952 ! defense response -relationship: negatively_regulates GO:0006952 ! defense response +intersection_of: RO:0002212 GO:0006952 ! negatively regulates defense response +relationship: RO:0002212 GO:0006952 ! negatively regulates defense response [Term] id: GO:0031349 @@ -66574,8 +66219,8 @@ synonym: "upregulation of defense response" EXACT [] is_a: GO:0031347 ! regulation of defense response is_a: GO:0048584 ! positive regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006952 ! defense response -relationship: positively_regulates GO:0006952 ! defense response +intersection_of: RO:0002213 GO:0006952 ! positively regulates defense response +relationship: RO:0002213 GO:0006952 ! positively regulates defense response [Term] id: GO:0031399 @@ -66586,14 +66231,15 @@ subset: goslim_yeast is_a: GO:0051246 ! regulation of protein metabolic process is_a: GO:0060255 ! regulation of macromolecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0036211 ! protein modification process -relationship: regulates GO:0036211 ! protein modification process +intersection_of: RO:0002211 GO:0036211 ! regulates (processual) protein modification process +relationship: RO:0002211 GO:0036211 ! regulates (processual) protein modification process [Term] id: GO:0031400 name: negative regulation of protein modification process namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the covalent alteration of one or more amino acid residues within a protein." [GOC:mah, GOC:tb] +subset: gocheck_obsoletion_candidate synonym: "down regulation of protein modification" EXACT [] synonym: "down-regulation of protein modification" EXACT [] synonym: "downregulation of protein modification" EXACT [] @@ -66602,14 +66248,15 @@ is_a: GO:0010605 ! negative regulation of macromolecule metabolic process is_a: GO:0031399 ! regulation of protein modification process is_a: GO:0051248 ! negative regulation of protein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0036211 ! protein modification process -relationship: negatively_regulates GO:0036211 ! protein modification process +intersection_of: RO:0002212 GO:0036211 ! negatively regulates protein modification process +relationship: RO:0002212 GO:0036211 ! negatively regulates protein modification process [Term] id: GO:0031401 name: positive regulation of protein modification process namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of the covalent alteration of one or more amino acid residues within a protein." [GOC:mah, GOC:tb] +subset: gocheck_obsoletion_candidate synonym: "activation of protein modification" NARROW [] synonym: "stimulation of protein modification" NARROW [] synonym: "up regulation of protein modification" EXACT [] @@ -66619,8 +66266,8 @@ is_a: GO:0010604 ! positive regulation of macromolecule metabolic process is_a: GO:0031399 ! regulation of protein modification process is_a: GO:0051247 ! positive regulation of protein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0036211 ! protein modification process -relationship: positively_regulates GO:0036211 ! protein modification process +intersection_of: RO:0002213 GO:0036211 ! positively regulates protein modification process +relationship: RO:0002213 GO:0036211 ! positively regulates protein modification process [Term] id: GO:0031402 @@ -66630,8 +66277,8 @@ def: "Binding to a sodium ion (Na+)." [GOC:mah] synonym: "Na+ ion binding" EXACT [] is_a: GO:0031420 ! alkali metal ion binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:29101 ! sodium(1+) -relationship: has_primary_input CHEBI:29101 ! sodium(1+) +intersection_of: RO:0004009 CHEBI:29101 ! has primary input sodium(1+) +relationship: RO:0004009 CHEBI:29101 ! has primary input sodium(1+) [Term] id: GO:0031406 @@ -66641,8 +66288,8 @@ def: "Binding to a carboxylic acid, an organic acid containing one or more carbo subset: goslim_pir is_a: GO:0043168 ! anion binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:29067 ! carboxylic acid anion -relationship: has_primary_input CHEBI:29067 ! carboxylic acid anion +intersection_of: RO:0004009 CHEBI:29067 ! has primary input carboxylic acid anion +relationship: RO:0004009 CHEBI:29067 ! has primary input carboxylic acid anion [Term] id: GO:0031409 @@ -66681,8 +66328,8 @@ def: "Any process that modulates an organism's tendency or ability to rise or fl synonym: "buoyancy regulation" EXACT [] is_a: GO:0065007 ! biological regulation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates_characteristic PATO:0001420 ! buoyancy -relationship: regulates_characteristic PATO:0001420 ! buoyancy +intersection_of: RO:0019000 PATO:0001420 ! regulates characteristic buoyancy +relationship: RO:0019000 PATO:0001420 ! regulates characteristic buoyancy [Term] id: GO:0031420 @@ -66691,8 +66338,8 @@ namespace: molecular_function def: "Binding to an alkali metal ion; alkali metals are those elements in group Ia of the periodic table, with the exception of hydrogen." [GOC:mah] is_a: GO:0046872 ! metal ion binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:33504 ! alkali metal cation -relationship: has_primary_input CHEBI:33504 ! alkali metal cation +intersection_of: RO:0004009 CHEBI:33504 ! has primary input alkali metal cation +relationship: RO:0004009 CHEBI:33504 ! has primary input alkali metal cation [Term] id: GO:0031424 @@ -66700,7 +66347,7 @@ name: keratinization namespace: biological_process def: "The process in which the cytoplasm of the outermost cells of the vertebrate epidermis is replaced by keratin. Keratinization occurs in the stratum corneum, feathers, hair, claws, nails, hooves, and horns." [GOC:dph, GOC:ebc, GOC:sdb_2009, GOC:tb] is_a: GO:0032501 ! multicellular organismal process -relationship: occurs_in CL:0000362 ! epidermal cell +relationship: BFO:0000066 CL:0000362 ! occurs in epidermal cell relationship: part_of GO:0030216 ! keratinocyte differentiation [Term] @@ -66718,8 +66365,8 @@ synonym: "protein complex localisation" EXACT [GOC:mah] synonym: "protein complex localization" RELATED [] is_a: GO:0051179 ! localization intersection_of: GO:0051179 ! localization -intersection_of: has_primary_input GO:0032991 ! protein-containing complex -relationship: has_primary_input GO:0032991 ! protein-containing complex +intersection_of: RO:0004009 GO:0032991 ! has primary input protein-containing complex +relationship: RO:0004009 GO:0032991 ! has primary input protein-containing complex property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22021" xsd:anyURI [Term] @@ -66765,9 +66412,9 @@ def: "Any process that modulates the frequency, rate or extent of the formation is_a: GO:0050794 ! regulation of cellular process is_a: GO:0051960 ! regulation of nervous system development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042552 ! myelination -relationship: regulates GO:0007399 ! nervous system development -relationship: regulates GO:0042552 ! myelination +intersection_of: RO:0002211 GO:0042552 ! regulates (processual) myelination +relationship: RO:0002211 GO:0007399 ! regulates (processual) nervous system development +relationship: RO:0002211 GO:0042552 ! regulates (processual) myelination [Term] id: GO:0031642 @@ -66782,8 +66429,8 @@ is_a: GO:0031641 ! regulation of myelination is_a: GO:0031645 ! negative regulation of nervous system process is_a: GO:0048523 ! negative regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042552 ! myelination -relationship: negatively_regulates GO:0042552 ! myelination +intersection_of: RO:0002212 GO:0042552 ! negatively regulates myelination +relationship: RO:0002212 GO:0042552 ! negatively regulates myelination [Term] id: GO:0031643 @@ -66799,10 +66446,10 @@ is_a: GO:0031641 ! regulation of myelination is_a: GO:0031646 ! positive regulation of nervous system process is_a: GO:0048522 ! positive regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042552 ! myelination +intersection_of: RO:0002213 GO:0042552 ! positively regulates myelination relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa -relationship: positively_regulates GO:0042552 ! myelination +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa +relationship: RO:0002213 GO:0042552 ! positively regulates myelination [Term] id: GO:0031644 @@ -66814,8 +66461,8 @@ synonym: "regulation of neurological system process" EXACT [] synonym: "regulation of neurophysiological process" EXACT [] is_a: GO:0044057 ! regulation of system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0050877 ! nervous system process -relationship: regulates GO:0050877 ! nervous system process +intersection_of: RO:0002211 GO:0050877 ! regulates (processual) nervous system process +relationship: RO:0002211 GO:0050877 ! regulates (processual) nervous system process [Term] id: GO:0031645 @@ -66832,8 +66479,8 @@ synonym: "negative regulation of neurophysiological process" EXACT [] is_a: GO:0031644 ! regulation of nervous system process is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0050877 ! nervous system process -relationship: negatively_regulates GO:0050877 ! nervous system process +intersection_of: RO:0002212 GO:0050877 ! negatively regulates nervous system process +relationship: RO:0002212 GO:0050877 ! negatively regulates nervous system process [Term] id: GO:0031646 @@ -66851,8 +66498,8 @@ synonym: "upregulation of neurological process" EXACT [] is_a: GO:0031644 ! regulation of nervous system process is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0050877 ! nervous system process -relationship: positively_regulates GO:0050877 ! nervous system process +intersection_of: RO:0002213 GO:0050877 ! positively regulates nervous system process +relationship: RO:0002213 GO:0050877 ! positively regulates nervous system process [Term] id: GO:0031727 @@ -66863,8 +66510,8 @@ synonym: "CCR2 chemokine receptor ligand" NARROW [] synonym: "monocyte chemoattractant protein 1 receptor binding" EXACT [] is_a: GO:0048020 ! CCR chemokine receptor binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input PR:000001199 ! C-C chemokine receptor type 2 -relationship: has_primary_input PR:000001199 ! C-C chemokine receptor type 2 +intersection_of: RO:0004009 PR:000001199 ! has primary input C-C chemokine receptor type 2 +relationship: RO:0004009 PR:000001199 ! has primary input C-C chemokine receptor type 2 [Term] id: GO:0031737 @@ -66875,8 +66522,8 @@ synonym: "CX3C chemokine receptor ligand" NARROW [] synonym: "fractalkine receptor binding" EXACT [] is_a: GO:0042379 ! chemokine receptor binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input PR:000001206 ! CX3C chemokine receptor 1 -relationship: has_primary_input PR:000001206 ! CX3C chemokine receptor 1 +intersection_of: RO:0004009 PR:000001206 ! has primary input CX3C chemokine receptor 1 +relationship: RO:0004009 PR:000001206 ! has primary input CX3C chemokine receptor 1 [Term] id: GO:0031887 @@ -66888,10 +66535,10 @@ synonym: "lipid body transport along microtubule" EXACT [] synonym: "lipid particle transport along microtubule" EXACT [] is_a: GO:0072384 ! organelle transport along microtubule intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input GO:0005811 ! lipid droplet -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: has_primary_input GO:0005811 ! lipid droplet -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +intersection_of: RO:0004009 GO:0005811 ! has primary input lipid droplet +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: RO:0004009 GO:0005811 ! has primary input lipid droplet [Term] id: GO:0031943 @@ -66900,11 +66547,10 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving glucocorticoids." [GOC:mah] synonym: "regulation of glucocorticoid metabolism" EXACT [] is_a: GO:0019218 ! regulation of steroid metabolic process -is_a: GO:0031323 ! regulation of cellular metabolic process is_a: GO:0032350 ! regulation of hormone metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008211 ! glucocorticoid metabolic process -relationship: regulates GO:0008211 ! glucocorticoid metabolic process +intersection_of: RO:0002211 GO:0008211 ! regulates (processual) glucocorticoid metabolic process +relationship: RO:0002211 GO:0008211 ! regulates (processual) glucocorticoid metabolic process [Term] id: GO:0031944 @@ -66916,13 +66562,12 @@ synonym: "down-regulation of glucocorticoid metabolic process" EXACT [] synonym: "downregulation of glucocorticoid metabolic process" EXACT [] synonym: "inhibition of glucocorticoid metabolic process" NARROW [] synonym: "negative regulation of glucocorticoid metabolism" EXACT [] -is_a: GO:0031324 ! negative regulation of cellular metabolic process is_a: GO:0031943 ! regulation of glucocorticoid metabolic process is_a: GO:0032351 ! negative regulation of hormone metabolic process is_a: GO:0045939 ! negative regulation of steroid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008211 ! glucocorticoid metabolic process -relationship: negatively_regulates GO:0008211 ! glucocorticoid metabolic process +intersection_of: RO:0002212 GO:0008211 ! negatively regulates glucocorticoid metabolic process +relationship: RO:0002212 GO:0008211 ! negatively regulates glucocorticoid metabolic process [Term] id: GO:0031945 @@ -66935,13 +66580,12 @@ synonym: "stimulation of glucocorticoid metabolic process" NARROW [] synonym: "up regulation of glucocorticoid metabolic process" EXACT [] synonym: "up-regulation of glucocorticoid metabolic process" EXACT [] synonym: "upregulation of glucocorticoid metabolic process" EXACT [] -is_a: GO:0031325 ! positive regulation of cellular metabolic process is_a: GO:0031943 ! regulation of glucocorticoid metabolic process is_a: GO:0032352 ! positive regulation of hormone metabolic process is_a: GO:0045940 ! positive regulation of steroid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008211 ! glucocorticoid metabolic process -relationship: positively_regulates GO:0008211 ! glucocorticoid metabolic process +intersection_of: RO:0002213 GO:0008211 ! positively regulates glucocorticoid metabolic process +relationship: RO:0002213 GO:0008211 ! positively regulates glucocorticoid metabolic process [Term] id: GO:0031946 @@ -66951,8 +66595,8 @@ def: "Any process that modulates the frequency, rate or extent of the chemical r is_a: GO:0031943 ! regulation of glucocorticoid metabolic process is_a: GO:0090030 ! regulation of steroid hormone biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006704 ! glucocorticoid biosynthetic process -relationship: regulates GO:0006704 ! glucocorticoid biosynthetic process +intersection_of: RO:0002211 GO:0006704 ! regulates (processual) glucocorticoid biosynthetic process +relationship: RO:0002211 GO:0006704 ! regulates (processual) glucocorticoid biosynthetic process [Term] id: GO:0031947 @@ -66967,8 +66611,8 @@ is_a: GO:0031944 ! negative regulation of glucocorticoid metabolic process is_a: GO:0031946 ! regulation of glucocorticoid biosynthetic process is_a: GO:0090032 ! negative regulation of steroid hormone biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006704 ! glucocorticoid biosynthetic process -relationship: negatively_regulates GO:0006704 ! glucocorticoid biosynthetic process +intersection_of: RO:0002212 GO:0006704 ! negatively regulates glucocorticoid biosynthetic process +relationship: RO:0002212 GO:0006704 ! negatively regulates glucocorticoid biosynthetic process [Term] id: GO:0031948 @@ -66984,20 +66628,20 @@ is_a: GO:0031945 ! positive regulation of glucocorticoid metabolic process is_a: GO:0031946 ! regulation of glucocorticoid biosynthetic process is_a: GO:0090031 ! positive regulation of steroid hormone biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006704 ! glucocorticoid biosynthetic process -relationship: positively_regulates GO:0006704 ! glucocorticoid biosynthetic process +intersection_of: RO:0002213 GO:0006704 ! positively regulates glucocorticoid biosynthetic process +relationship: RO:0002213 GO:0006704 ! positively regulates glucocorticoid biosynthetic process [Term] id: GO:0031949 name: regulation of glucocorticoid catabolic process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glucocorticoids." [GOC:mah] -is_a: GO:0031329 ! regulation of cellular catabolic process is_a: GO:0031943 ! regulation of glucocorticoid metabolic process is_a: GO:0050994 ! regulation of lipid catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006713 ! glucocorticoid catabolic process -relationship: regulates GO:0006713 ! glucocorticoid catabolic process +intersection_of: RO:0002211 GO:0006713 ! regulates (processual) glucocorticoid catabolic process +relationship: RO:0002211 GO:0006713 ! regulates (processual) glucocorticoid catabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29024" xsd:anyURI [Term] id: GO:0031950 @@ -67008,13 +66652,13 @@ synonym: "down regulation of glucocorticoid catabolic process" EXACT [] synonym: "down-regulation of glucocorticoid catabolic process" EXACT [] synonym: "downregulation of glucocorticoid catabolic process" EXACT [] synonym: "inhibition of glucocorticoid catabolic process" NARROW [] -is_a: GO:0031330 ! negative regulation of cellular catabolic process is_a: GO:0031944 ! negative regulation of glucocorticoid metabolic process is_a: GO:0031949 ! regulation of glucocorticoid catabolic process is_a: GO:0050995 ! negative regulation of lipid catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006713 ! glucocorticoid catabolic process -relationship: negatively_regulates GO:0006713 ! glucocorticoid catabolic process +intersection_of: RO:0002212 GO:0006713 ! negatively regulates glucocorticoid catabolic process +relationship: RO:0002212 GO:0006713 ! negatively regulates glucocorticoid catabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29024" xsd:anyURI [Term] id: GO:0031951 @@ -67026,22 +66670,12 @@ synonym: "stimulation of glucocorticoid catabolic process" NARROW [] synonym: "up regulation of glucocorticoid catabolic process" EXACT [] synonym: "up-regulation of glucocorticoid catabolic process" EXACT [] synonym: "upregulation of glucocorticoid catabolic process" EXACT [] -is_a: GO:0031331 ! positive regulation of cellular catabolic process is_a: GO:0031945 ! positive regulation of glucocorticoid metabolic process is_a: GO:0031949 ! regulation of glucocorticoid catabolic process is_a: GO:0050996 ! positive regulation of lipid catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006713 ! glucocorticoid catabolic process -relationship: positively_regulates GO:0006713 ! glucocorticoid catabolic process - -[Term] -id: GO:0031958 -name: nuclear receptor-mediated corticosteroid signaling pathway -namespace: biological_process -def: "A nuclear receptor-mediated signaling pathway initiated by a corticosteroid binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription." [PMID:11027914, PMID:12606724] -synonym: "corticosteroid receptor signalling pathway" BROAD [] -synonym: "intracellular corticosteroid receptor signaling pathway" EXACT [] -is_a: GO:0030518 ! nuclear receptor-mediated steroid hormone signaling pathway +intersection_of: RO:0002213 GO:0006713 ! positively regulates glucocorticoid catabolic process +relationship: RO:0002213 GO:0006713 ! positively regulates glucocorticoid catabolic process [Term] id: GO:0031960 @@ -67051,8 +66685,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to corticosteroid stimulus" EXACT [GOC:dos] is_a: GO:0048545 ! response to steroid hormone intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:50858 ! corticosteroid -relationship: has_primary_input CHEBI:50858 ! corticosteroid +intersection_of: RO:0004009 CHEBI:50858 ! has primary input corticosteroid +relationship: RO:0004009 CHEBI:50858 ! has primary input corticosteroid [Term] id: GO:0031965 @@ -67072,7 +66706,7 @@ name: organelle envelope namespace: cellular_component def: "A double membrane structure enclosing an organelle, including two lipid bilayers and the region between them. In some cases, an organelle envelope may have more than two membranes." [GOC:mah, GOC:pz] subset: goslim_mouse -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of GO:0043227 ! membrane-bounded organelle relationship: part_of GO:0043229 ! intracellular organelle @@ -67095,7 +66729,7 @@ id: GO:0031974 name: membrane-enclosed lumen namespace: cellular_component def: "The enclosed volume within a sealed membrane or between two sealed membranes. Encompasses the volume enclosed by the membranes of a particular organelle, e.g. endoplasmic reticulum lumen, or the space between the two lipid bilayers of a double membrane surrounding an organelle, e.g. nuclear envelope lumen." [GOC:add, GOC:mah] -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure disjoint_from: GO:0045202 ! synapse [Term] @@ -67137,7 +66771,7 @@ namespace: cellular_component def: "A prominent mass in the cytoplasm of previtellogenic oocytes. The cloud contains both mitochondria and electron-dense granulofibrillar material (GFM) and is the source of germinal granule material." [PMID:6541166] synonym: "Balbiani body" EXACT [] synonym: "mitochondrial aggregate" RELATED [] -is_a: GO:0043232 ! intracellular non-membrane-bounded organelle +is_a: GO:0043232 ! intracellular membraneless organelle relationship: part_of CL:0000023 ! oocyte relationship: part_of GO:0005737 ! cytoplasm @@ -67155,8 +66789,8 @@ is_a: GO:0050714 ! positive regulation of protein secretion is_a: GO:0050796 ! regulation of insulin secretion is_a: GO:0090277 ! positive regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030073 ! insulin secretion -relationship: positively_regulates GO:0030073 ! insulin secretion +intersection_of: RO:0002213 GO:0030073 ! positively regulates insulin secretion +relationship: RO:0002213 GO:0030073 ! positively regulates insulin secretion [Term] id: GO:0032052 @@ -67165,8 +66799,8 @@ namespace: molecular_function def: "Binding to a bile acid, a steroid carboxylic acids occurring in bile." [GOC:rph] is_a: GO:0033293 ! monocarboxylic acid binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:36235 ! bile acid anion -relationship: has_primary_input CHEBI:36235 ! bile acid anion +intersection_of: RO:0004009 CHEBI:36235 ! has primary input bile acid anion +relationship: RO:0004009 CHEBI:36235 ! has primary input bile acid anion [Term] id: GO:0032057 @@ -67179,10 +66813,10 @@ synonym: "downregulation of translation initiation in response to stress" EXACT synonym: "inhibition of translation initiation in response to stress" NARROW [] is_a: GO:0045947 ! negative regulation of translational initiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006413 ! translational initiation intersection_of: part_of GO:0006950 ! response to stress -relationship: negatively_regulates GO:0006413 ! translational initiation +intersection_of: RO:0002212 GO:0006413 ! negatively regulates translational initiation relationship: part_of GO:0006950 ! response to stress +relationship: RO:0002212 GO:0006413 ! negatively regulates translational initiation [Term] id: GO:0032058 @@ -67197,9 +66831,9 @@ synonym: "upregulation of translation initiation in response to stress" EXACT [] is_a: GO:0045948 ! positive regulation of translational initiation intersection_of: GO:0065007 ! biological regulation intersection_of: part_of GO:0006950 ! response to stress -intersection_of: positively_regulates GO:0006413 ! translational initiation +intersection_of: RO:0002213 GO:0006413 ! positively regulates translational initiation relationship: part_of GO:0006950 ! response to stress -relationship: positively_regulates GO:0006413 ! translational initiation +relationship: RO:0002213 GO:0006413 ! positively regulates translational initiation [Term] id: GO:0032059 @@ -67223,8 +66857,8 @@ synonym: "plasma membrane bleb assembly" EXACT [GOC:pr] synonym: "plasma membrane blebbing" EXACT [GOC:pr] is_a: GO:0120031 ! plasma membrane bounded cell projection assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0032059 ! bleb -relationship: results_in_assembly_of GO:0032059 ! bleb +intersection_of: RO:0002588 GO:0032059 ! results in assembly of bleb +relationship: RO:0002588 GO:0032059 ! results in assembly of bleb [Term] id: GO:0032065 @@ -67234,43 +66868,43 @@ def: "A process in which a protein or protein complex is maintained in a specifi synonym: "cortical protein anchoring" RELATED [] is_a: GO:0032507 ! maintenance of protein location in cell intersection_of: GO:0045185 ! maintenance of protein location -intersection_of: occurs_in GO:0005938 ! cell cortex -relationship: occurs_in GO:0005938 ! cell cortex +intersection_of: BFO:0000066 GO:0005938 ! occurs in cell cortex +relationship: BFO:0000066 GO:0005938 ! occurs in cell cortex [Term] id: GO:0032069 name: regulation of nuclease activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of nuclease activity, the hydrolysis of ester linkages within nucleic acids." [GOC:mah] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "nuclease regulator activity" RELATED [] is_a: GO:0051336 ! regulation of hydrolase activity is_a: GO:0060255 ! regulation of macromolecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0004518 ! nuclease activity -relationship: regulates GO:0004518 ! nuclease activity -relationship: regulates GO:0043170 ! macromolecule metabolic process +intersection_of: RO:0002211 GO:0004518 ! regulates (processual) nuclease activity +relationship: RO:0002211 GO:0004518 ! regulates (processual) nuclease activity +relationship: RO:0002211 GO:0043170 ! regulates (processual) macromolecule metabolic process [Term] id: GO:0032070 name: regulation of deoxyribonuclease activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of deoxyribonuclease activity, the hydrolysis of ester linkages within deoxyribonucleic acid." [GOC:mah] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "deoxyribonuclease regulator" RELATED [] synonym: "DNase regulator" RELATED [] is_a: GO:0032069 ! regulation of nuclease activity is_a: GO:0051052 ! regulation of DNA metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0004536 ! DNA nuclease activity -relationship: regulates GO:0004536 ! DNA nuclease activity +intersection_of: RO:0002211 GO:0004536 ! regulates (processual) DNA nuclease activity +relationship: RO:0002211 GO:0004536 ! regulates (processual) DNA nuclease activity [Term] id: GO:0032074 name: negative regulation of nuclease activity namespace: biological_process def: "Any process that stops or reduces the rate of nuclease activity, the hydrolysis of ester linkages within nucleic acids." [GOC:mah] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "down regulation of nuclease activity" EXACT [] synonym: "down-regulation of nuclease activity" EXACT [] synonym: "downregulation of nuclease activity" EXACT [] @@ -67280,16 +66914,16 @@ is_a: GO:0032069 ! regulation of nuclease activity is_a: GO:0045934 ! negative regulation of nucleobase-containing compound metabolic process is_a: GO:0051346 ! negative regulation of hydrolase activity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0004518 ! nuclease activity -relationship: negatively_regulates GO:0004518 ! nuclease activity -relationship: negatively_regulates GO:0006139 ! nucleobase-containing compound metabolic process +intersection_of: RO:0002212 GO:0004518 ! negatively regulates nuclease activity +relationship: RO:0002212 GO:0004518 ! negatively regulates nuclease activity +relationship: RO:0002212 GO:0006139 ! negatively regulates nucleobase-containing compound metabolic process [Term] id: GO:0032075 name: positive regulation of nuclease activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of nuclease activity, the hydrolysis of ester linkages within nucleic acids." [GOC:mah] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "activation of nuclease activity" NARROW [] synonym: "nuclease activator" RELATED [] synonym: "stimulation of nuclease activity" NARROW [] @@ -67300,16 +66934,16 @@ is_a: GO:0032069 ! regulation of nuclease activity is_a: GO:0045935 ! positive regulation of nucleobase-containing compound metabolic process is_a: GO:0051345 ! positive regulation of hydrolase activity intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0004518 ! nuclease activity -relationship: positively_regulates GO:0004518 ! nuclease activity -relationship: positively_regulates GO:0006139 ! nucleobase-containing compound metabolic process +intersection_of: RO:0002213 GO:0004518 ! positively regulates nuclease activity +relationship: RO:0002213 GO:0004518 ! positively regulates nuclease activity +relationship: RO:0002213 GO:0006139 ! positively regulates nucleobase-containing compound metabolic process [Term] id: GO:0032076 name: negative regulation of deoxyribonuclease activity namespace: biological_process def: "Any process that stops or reduces the rate of deoxyribonuclease activity, the hydrolysis of ester linkages within deoxyribonucleic acid." [GOC:mah] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "deoxyribonuclease inhibitor" RELATED [] synonym: "DNase inhibitor" RELATED [] synonym: "down regulation of deoxyribonuclease activity" EXACT [] @@ -67320,15 +66954,15 @@ is_a: GO:0032070 ! regulation of deoxyribonuclease activity is_a: GO:0032074 ! negative regulation of nuclease activity is_a: GO:0051053 ! negative regulation of DNA metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0004536 ! DNA nuclease activity -relationship: negatively_regulates GO:0004536 ! DNA nuclease activity +intersection_of: RO:0002212 GO:0004536 ! negatively regulates DNA nuclease activity +relationship: RO:0002212 GO:0004536 ! negatively regulates DNA nuclease activity [Term] id: GO:0032077 name: positive regulation of deoxyribonuclease activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of deoxyribonuclease activity, the hydrolysis of ester linkages within deoxyribonucleic acid." [GOC:mah] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "activation of deoxyribonuclease activity" NARROW [] synonym: "deoxyribonuclease activator" RELATED [] synonym: "DNase activator" RELATED [] @@ -67340,8 +66974,8 @@ is_a: GO:0032070 ! regulation of deoxyribonuclease activity is_a: GO:0032075 ! positive regulation of nuclease activity is_a: GO:0051054 ! positive regulation of DNA metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0004536 ! DNA nuclease activity -relationship: positively_regulates GO:0004536 ! DNA nuclease activity +intersection_of: RO:0002213 GO:0004536 ! positively regulates DNA nuclease activity +relationship: RO:0002213 GO:0004536 ! positively regulates DNA nuclease activity [Term] id: GO:0032091 @@ -67356,8 +66990,8 @@ synonym: "inhibition of protein binding" NARROW [] is_a: GO:0043393 ! regulation of protein binding is_a: GO:0051100 ! negative regulation of binding intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0005515 ! protein binding -relationship: negatively_regulates GO:0005515 ! protein binding +intersection_of: RO:0002212 GO:0005515 ! negatively regulates protein binding +relationship: RO:0002212 GO:0005515 ! negatively regulates protein binding [Term] id: GO:0032092 @@ -67373,8 +67007,8 @@ synonym: "upregulation of protein binding" EXACT [] is_a: GO:0043393 ! regulation of protein binding is_a: GO:0051099 ! positive regulation of binding intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0005515 ! protein binding -relationship: positively_regulates GO:0005515 ! protein binding +intersection_of: RO:0002213 GO:0005515 ! positively regulates protein binding +relationship: RO:0002213 GO:0005515 ! positively regulates protein binding [Term] id: GO:0032101 @@ -67385,8 +67019,8 @@ comment: Note that this term is in the subset of terms that should not be used f subset: gocheck_do_not_annotate is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009605 ! response to external stimulus -relationship: regulates GO:0009605 ! response to external stimulus +intersection_of: RO:0002211 GO:0009605 ! regulates (processual) response to external stimulus +relationship: RO:0002211 GO:0009605 ! regulates (processual) response to external stimulus [Term] id: GO:0032102 @@ -67402,8 +67036,8 @@ synonym: "inhibition of response to external stimulus" NARROW [] is_a: GO:0032101 ! regulation of response to external stimulus is_a: GO:0048585 ! negative regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009605 ! response to external stimulus -relationship: negatively_regulates GO:0009605 ! response to external stimulus +intersection_of: RO:0002212 GO:0009605 ! negatively regulates response to external stimulus +relationship: RO:0002212 GO:0009605 ! negatively regulates response to external stimulus [Term] id: GO:0032103 @@ -67420,8 +67054,8 @@ synonym: "upregulation of response to external stimulus" EXACT [] is_a: GO:0032101 ! regulation of response to external stimulus is_a: GO:0048584 ! positive regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009605 ! response to external stimulus -relationship: positively_regulates GO:0009605 ! response to external stimulus +intersection_of: RO:0002213 GO:0009605 ! positively regulates response to external stimulus +relationship: RO:0002213 GO:0009605 ! positively regulates response to external stimulus [Term] id: GO:0032127 @@ -67442,8 +67076,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cholinergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter acetylcholine." [GOC:mah] is_a: GO:0050804 ! modulation of chemical synaptic transmission intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007271 ! synaptic transmission, cholinergic -relationship: regulates GO:0007271 ! synaptic transmission, cholinergic +intersection_of: RO:0002211 GO:0007271 ! regulates (processual) synaptic transmission, cholinergic +relationship: RO:0002211 GO:0007271 ! regulates (processual) synaptic transmission, cholinergic [Term] id: GO:0032223 @@ -67457,8 +67091,8 @@ synonym: "inhibition of synaptic transmission, cholinergic" NARROW [] is_a: GO:0032222 ! regulation of synaptic transmission, cholinergic is_a: GO:0050805 ! negative regulation of synaptic transmission intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007271 ! synaptic transmission, cholinergic -relationship: negatively_regulates GO:0007271 ! synaptic transmission, cholinergic +intersection_of: RO:0002212 GO:0007271 ! negatively regulates synaptic transmission, cholinergic +relationship: RO:0002212 GO:0007271 ! negatively regulates synaptic transmission, cholinergic [Term] id: GO:0032224 @@ -67473,8 +67107,8 @@ synonym: "upregulation of synaptic transmission, cholinergic" EXACT [] is_a: GO:0032222 ! regulation of synaptic transmission, cholinergic is_a: GO:0050806 ! positive regulation of synaptic transmission intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007271 ! synaptic transmission, cholinergic -relationship: positively_regulates GO:0007271 ! synaptic transmission, cholinergic +intersection_of: RO:0002213 GO:0007271 ! positively regulates synaptic transmission, cholinergic +relationship: RO:0002213 GO:0007271 ! positively regulates synaptic transmission, cholinergic [Term] id: GO:0032225 @@ -67483,8 +67117,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of dopaminergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine." [GOC:mah] is_a: GO:0050804 ! modulation of chemical synaptic transmission intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001963 ! synaptic transmission, dopaminergic -relationship: regulates GO:0001963 ! synaptic transmission, dopaminergic +intersection_of: RO:0002211 GO:0001963 ! regulates (processual) synaptic transmission, dopaminergic +relationship: RO:0002211 GO:0001963 ! regulates (processual) synaptic transmission, dopaminergic [Term] id: GO:0032226 @@ -67499,8 +67133,8 @@ synonym: "upregulation of synaptic transmission, dopaminergic" EXACT [] is_a: GO:0032225 ! regulation of synaptic transmission, dopaminergic is_a: GO:0050806 ! positive regulation of synaptic transmission intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001963 ! synaptic transmission, dopaminergic -relationship: positively_regulates GO:0001963 ! synaptic transmission, dopaminergic +intersection_of: RO:0002213 GO:0001963 ! positively regulates synaptic transmission, dopaminergic +relationship: RO:0002213 GO:0001963 ! positively regulates synaptic transmission, dopaminergic [Term] id: GO:0032227 @@ -67514,8 +67148,8 @@ synonym: "inhibition of synaptic transmission, dopaminergic" NARROW [] is_a: GO:0032225 ! regulation of synaptic transmission, dopaminergic is_a: GO:0050805 ! negative regulation of synaptic transmission intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001963 ! synaptic transmission, dopaminergic -relationship: negatively_regulates GO:0001963 ! synaptic transmission, dopaminergic +intersection_of: RO:0002212 GO:0001963 ! negatively regulates synaptic transmission, dopaminergic +relationship: RO:0002212 GO:0001963 ! negatively regulates synaptic transmission, dopaminergic [Term] id: GO:0032228 @@ -67524,8 +67158,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA)." [GOC:mah] is_a: GO:0050804 ! modulation of chemical synaptic transmission intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051932 ! synaptic transmission, GABAergic -relationship: regulates GO:0051932 ! synaptic transmission, GABAergic +intersection_of: RO:0002211 GO:0051932 ! regulates (processual) synaptic transmission, GABAergic +relationship: RO:0002211 GO:0051932 ! regulates (processual) synaptic transmission, GABAergic [Term] id: GO:0032229 @@ -67539,8 +67173,8 @@ synonym: "inhibition of synaptic transmission, GABAergic" NARROW [] is_a: GO:0032228 ! regulation of synaptic transmission, GABAergic is_a: GO:0050805 ! negative regulation of synaptic transmission intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051932 ! synaptic transmission, GABAergic -relationship: negatively_regulates GO:0051932 ! synaptic transmission, GABAergic +intersection_of: RO:0002212 GO:0051932 ! negatively regulates synaptic transmission, GABAergic +relationship: RO:0002212 GO:0051932 ! negatively regulates synaptic transmission, GABAergic [Term] id: GO:0032230 @@ -67555,8 +67189,8 @@ synonym: "upregulation of synaptic transmission, GABAergic" EXACT [] is_a: GO:0032228 ! regulation of synaptic transmission, GABAergic is_a: GO:0050806 ! positive regulation of synaptic transmission intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051932 ! synaptic transmission, GABAergic -relationship: positively_regulates GO:0051932 ! synaptic transmission, GABAergic +intersection_of: RO:0002213 GO:0051932 ! positively regulates synaptic transmission, GABAergic +relationship: RO:0002213 GO:0051932 ! positively regulates synaptic transmission, GABAergic [Term] id: GO:0032231 @@ -67568,9 +67202,9 @@ synonym: "regulation of actin filament bundle formation" RELATED [GOC:dph] is_a: GO:0044087 ! regulation of cellular component biogenesis is_a: GO:0110053 ! regulation of actin filament organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051017 ! actin filament bundle assembly -relationship: regulates GO:0044085 ! cellular component biogenesis -relationship: regulates GO:0051017 ! actin filament bundle assembly +intersection_of: RO:0002211 GO:0051017 ! regulates (processual) actin filament bundle assembly +relationship: RO:0002211 GO:0044085 ! regulates (processual) cellular component biogenesis +relationship: RO:0002211 GO:0051017 ! regulates (processual) actin filament bundle assembly [Term] id: GO:0032232 @@ -67585,8 +67219,8 @@ is_a: GO:0032231 ! regulation of actin filament bundle assembly is_a: GO:0051494 ! negative regulation of cytoskeleton organization is_a: GO:1902904 ! negative regulation of supramolecular fiber organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051017 ! actin filament bundle assembly -relationship: negatively_regulates GO:0051017 ! actin filament bundle assembly +intersection_of: RO:0002212 GO:0051017 ! negatively regulates actin filament bundle assembly +relationship: RO:0002212 GO:0051017 ! negatively regulates actin filament bundle assembly [Term] id: GO:0032233 @@ -67603,9 +67237,9 @@ is_a: GO:0044089 ! positive regulation of cellular component biogenesis is_a: GO:0051495 ! positive regulation of cytoskeleton organization is_a: GO:1902905 ! positive regulation of supramolecular fiber organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051017 ! actin filament bundle assembly -relationship: positively_regulates GO:0044085 ! cellular component biogenesis -relationship: positively_regulates GO:0051017 ! actin filament bundle assembly +intersection_of: RO:0002213 GO:0051017 ! positively regulates actin filament bundle assembly +relationship: RO:0002213 GO:0044085 ! positively regulates cellular component biogenesis +relationship: RO:0002213 GO:0051017 ! positively regulates actin filament bundle assembly [Term] id: GO:0032238 @@ -67614,8 +67248,8 @@ namespace: biological_process def: "The directed movement of adenosine, adenine riboside, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah] is_a: GO:0015858 ! nucleoside transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:16335 ! adenosine -relationship: has_primary_input CHEBI:16335 ! adenosine +intersection_of: RO:0004009 CHEBI:16335 ! has primary input adenosine +relationship: RO:0004009 CHEBI:16335 ! has primary input adenosine [Term] id: GO:0032239 @@ -67625,8 +67259,8 @@ def: "Any process that modulates the frequency, rate or extent of the directed m synonym: "regulation of nucleobase, nucleoside, nucleotide and nucleic acid transport" RELATED [GOC:dph, GOC:tb] is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0015931 ! nucleobase-containing compound transport -relationship: regulates GO:0015931 ! nucleobase-containing compound transport +intersection_of: RO:0002211 GO:0015931 ! regulates (processual) nucleobase-containing compound transport +relationship: RO:0002211 GO:0015931 ! regulates (processual) nucleobase-containing compound transport [Term] id: GO:0032240 @@ -67641,8 +67275,8 @@ synonym: "negative regulation of nucleobase, nucleoside, nucleotide and nucleic is_a: GO:0032239 ! regulation of nucleobase-containing compound transport is_a: GO:0051051 ! negative regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0015931 ! nucleobase-containing compound transport -relationship: negatively_regulates GO:0015931 ! nucleobase-containing compound transport +intersection_of: RO:0002212 GO:0015931 ! negatively regulates nucleobase-containing compound transport +relationship: RO:0002212 GO:0015931 ! negatively regulates nucleobase-containing compound transport [Term] id: GO:0032241 @@ -67658,8 +67292,8 @@ synonym: "upregulation of nucleobase, nucleoside, nucleotide and nucleic acid tr is_a: GO:0032239 ! regulation of nucleobase-containing compound transport is_a: GO:0051050 ! positive regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0015931 ! nucleobase-containing compound transport -relationship: positively_regulates GO:0015931 ! nucleobase-containing compound transport +intersection_of: RO:0002213 GO:0015931 ! positively regulates nucleobase-containing compound transport +relationship: RO:0002213 GO:0015931 ! positively regulates nucleobase-containing compound transport [Term] id: GO:0032242 @@ -67668,8 +67302,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the directed movement of a nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah] is_a: GO:0032239 ! regulation of nucleobase-containing compound transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0015858 ! nucleoside transport -relationship: regulates GO:0015858 ! nucleoside transport +intersection_of: RO:0002211 GO:0015858 ! regulates (processual) nucleoside transport +relationship: RO:0002211 GO:0015858 ! regulates (processual) nucleoside transport [Term] id: GO:0032243 @@ -67683,8 +67317,8 @@ synonym: "inhibition of nucleoside transport" NARROW [] is_a: GO:0032240 ! negative regulation of nucleobase-containing compound transport is_a: GO:0032242 ! regulation of nucleoside transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0015858 ! nucleoside transport -relationship: negatively_regulates GO:0015858 ! nucleoside transport +intersection_of: RO:0002212 GO:0015858 ! negatively regulates nucleoside transport +relationship: RO:0002212 GO:0015858 ! negatively regulates nucleoside transport [Term] id: GO:0032244 @@ -67699,8 +67333,8 @@ synonym: "upregulation of nucleoside transport" EXACT [] is_a: GO:0032241 ! positive regulation of nucleobase-containing compound transport is_a: GO:0032242 ! regulation of nucleoside transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0015858 ! nucleoside transport -relationship: positively_regulates GO:0015858 ! nucleoside transport +intersection_of: RO:0002213 GO:0015858 ! positively regulates nucleoside transport +relationship: RO:0002213 GO:0015858 ! positively regulates nucleoside transport [Term] id: GO:0032245 @@ -67741,8 +67375,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the directed movement of adenosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah] is_a: GO:0032245 ! regulation of purine nucleoside transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032238 ! adenosine transport -relationship: regulates GO:0032238 ! adenosine transport +intersection_of: RO:0002211 GO:0032238 ! regulates (processual) adenosine transport +relationship: RO:0002211 GO:0032238 ! regulates (processual) adenosine transport [Term] id: GO:0032250 @@ -67756,8 +67390,8 @@ synonym: "inhibition of adenosine transport" NARROW [] is_a: GO:0032247 ! negative regulation of purine nucleoside transport is_a: GO:0032249 ! regulation of adenosine transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032238 ! adenosine transport -relationship: negatively_regulates GO:0032238 ! adenosine transport +intersection_of: RO:0002212 GO:0032238 ! negatively regulates adenosine transport +relationship: RO:0002212 GO:0032238 ! negatively regulates adenosine transport [Term] id: GO:0032251 @@ -67772,8 +67406,8 @@ synonym: "upregulation of adenosine transport" EXACT [] is_a: GO:0032248 ! positive regulation of purine nucleoside transport is_a: GO:0032249 ! regulation of adenosine transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032238 ! adenosine transport -relationship: positively_regulates GO:0032238 ! adenosine transport +intersection_of: RO:0002213 GO:0032238 ! positively regulates adenosine transport +relationship: RO:0002213 GO:0032238 ! positively regulates adenosine transport [Term] id: GO:0032252 @@ -67784,8 +67418,8 @@ synonym: "secretory granule clustering" RELATED [] synonym: "secretory granule localisation" EXACT [GOC:mah] is_a: GO:0051648 ! vesicle localization intersection_of: GO:0051179 ! localization -intersection_of: has_primary_input GO:0030141 ! secretory granule -relationship: has_primary_input GO:0030141 ! secretory granule +intersection_of: RO:0004009 GO:0030141 ! has primary input secretory granule +relationship: RO:0004009 GO:0030141 ! has primary input secretory granule [Term] id: GO:0032253 @@ -67797,8 +67431,8 @@ synonym: "dense core granule localisation" EXACT [GOC:mah] synonym: "dense core vesicle localization" EXACT [GOC:kmv] is_a: GO:0032252 ! secretory granule localization intersection_of: GO:0051179 ! localization -intersection_of: has_primary_input GO:0031045 ! dense core granule -relationship: has_primary_input GO:0031045 ! dense core granule +intersection_of: RO:0004009 GO:0031045 ! has primary input dense core granule +relationship: RO:0004009 GO:0031045 ! has primary input dense core granule [Term] id: GO:0032271 @@ -67808,8 +67442,8 @@ def: "Any process that modulates the frequency, rate or extent of the process of synonym: "regulation of protein polymerisation" EXACT [] is_a: GO:0043254 ! regulation of protein-containing complex assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051258 ! protein polymerization -relationship: regulates GO:0051258 ! protein polymerization +intersection_of: RO:0002211 GO:0051258 ! regulates (processual) protein polymerization +relationship: RO:0002211 GO:0051258 ! regulates (processual) protein polymerization [Term] id: GO:0032272 @@ -67823,8 +67457,8 @@ synonym: "inhibition of protein polymerization" NARROW [] is_a: GO:0031333 ! negative regulation of protein-containing complex assembly is_a: GO:0032271 ! regulation of protein polymerization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051258 ! protein polymerization -relationship: negatively_regulates GO:0051258 ! protein polymerization +intersection_of: RO:0002212 GO:0051258 ! negatively regulates protein polymerization +relationship: RO:0002212 GO:0051258 ! negatively regulates protein polymerization [Term] id: GO:0032273 @@ -67839,8 +67473,8 @@ synonym: "upregulation of protein polymerization" EXACT [] is_a: GO:0031334 ! positive regulation of protein-containing complex assembly is_a: GO:0032271 ! regulation of protein polymerization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051258 ! protein polymerization -relationship: positively_regulates GO:0051258 ! protein polymerization +intersection_of: RO:0002213 GO:0051258 ! positively regulates protein polymerization +relationship: RO:0002213 GO:0051258 ! positively regulates protein polymerization [Term] id: GO:0032274 @@ -67866,9 +67500,9 @@ synonym: "regulation of gonadotrophin secretion" EXACT [] is_a: GO:0044060 ! regulation of endocrine process is_a: GO:0046883 ! regulation of hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032274 ! gonadotropin secretion -relationship: regulates GO:0032274 ! gonadotropin secretion -relationship: regulates GO:0050886 ! endocrine process +intersection_of: RO:0002211 GO:0032274 ! regulates (processual) gonadotropin secretion +relationship: RO:0002211 GO:0032274 ! regulates (processual) gonadotropin secretion +relationship: RO:0002211 GO:0050886 ! regulates (processual) endocrine process [Term] id: GO:0032277 @@ -67884,9 +67518,9 @@ is_a: GO:0032276 ! regulation of gonadotropin secretion is_a: GO:0046888 ! negative regulation of hormone secretion is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032274 ! gonadotropin secretion -relationship: negatively_regulates GO:0032274 ! gonadotropin secretion -relationship: negatively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002212 GO:0032274 ! negatively regulates gonadotropin secretion +relationship: RO:0002212 GO:0032274 ! negatively regulates gonadotropin secretion +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process [Term] id: GO:0032278 @@ -67903,9 +67537,9 @@ is_a: GO:0032276 ! regulation of gonadotropin secretion is_a: GO:0046887 ! positive regulation of hormone secretion is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032274 ! gonadotropin secretion -relationship: positively_regulates GO:0032274 ! gonadotropin secretion -relationship: positively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002213 GO:0032274 ! positively regulates gonadotropin secretion +relationship: RO:0002213 GO:0032274 ! positively regulates gonadotropin secretion +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process [Term] id: GO:0032288 @@ -67916,9 +67550,9 @@ synonym: "myelin formation" RELATED [GOC:dph, GOC:tb] synonym: "myelin sheath assembly" EXACT [] is_a: GO:0010927 ! cellular component assembly involved in morphogenesis intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0043209 ! myelin sheath +intersection_of: RO:0002588 GO:0043209 ! results in assembly of myelin sheath relationship: part_of GO:0042552 ! myelination -relationship: results_in_assembly_of GO:0043209 ! myelin sheath +relationship: RO:0002588 GO:0043209 ! results in assembly of myelin sheath [Term] id: GO:0032289 @@ -67929,11 +67563,11 @@ synonym: "central nervous system myelin sheath formation" EXACT [] synonym: "myelin formation in central nervous system" EXACT [] is_a: GO:0032288 ! myelin assembly intersection_of: GO:0032288 ! myelin assembly -intersection_of: occurs_in UBERON:0001017 ! central nervous system +intersection_of: BFO:0000066 UBERON:0001017 ! occurs in central nervous system +relationship: BFO:0000066 UBERON:0001017 ! occurs in central nervous system relationship: in_taxon NCBITaxon:33213 {all_only="true"} ! Bilateria -relationship: occurs_in UBERON:0001017 ! central nervous system -relationship: only_in_taxon NCBITaxon:33213 ! Bilateria relationship: part_of GO:0022010 ! central nervous system myelination +relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria [Term] id: GO:0032290 @@ -67944,8 +67578,8 @@ synonym: "myelin formation in peripheral nervous system" EXACT [] synonym: "peripheral nervous system myelin sheath formation" EXACT [] is_a: GO:0032288 ! myelin assembly intersection_of: GO:0032288 ! myelin assembly -intersection_of: occurs_in UBERON:0000010 ! peripheral nervous system -relationship: occurs_in UBERON:0000010 ! peripheral nervous system +intersection_of: BFO:0000066 UBERON:0000010 ! occurs in peripheral nervous system +relationship: BFO:0000066 UBERON:0000010 ! occurs in peripheral nervous system relationship: part_of GO:0022011 ! myelination in peripheral nervous system property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19106" xsd:anyURI @@ -67957,10 +67591,10 @@ def: "The process in which a glial cell membrane closes around an axon in the ce synonym: "ensheathment of axons in central nervous system" EXACT [] is_a: GO:0008366 ! axon ensheathment intersection_of: GO:0008366 ! axon ensheathment -intersection_of: occurs_in UBERON:0001017 ! central nervous system +intersection_of: BFO:0000066 UBERON:0001017 ! occurs in central nervous system +relationship: BFO:0000066 UBERON:0001017 ! occurs in central nervous system relationship: in_taxon NCBITaxon:33213 {all_only="true"} ! Bilateria -relationship: occurs_in UBERON:0001017 ! central nervous system -relationship: only_in_taxon NCBITaxon:33213 ! Bilateria +relationship: RO:0002160 NCBITaxon:33213 ! only in taxon Bilateria [Term] id: GO:0032292 @@ -67970,8 +67604,8 @@ def: "The process in which a Schwann cell membrane closes around an axon in the synonym: "ensheathment of axons in peripheral nervous system" EXACT [] is_a: GO:0008366 ! axon ensheathment intersection_of: GO:0008366 ! axon ensheathment -intersection_of: occurs_in UBERON:0000010 ! peripheral nervous system -relationship: occurs_in UBERON:0000010 ! peripheral nervous system +intersection_of: BFO:0000066 UBERON:0000010 ! occurs in peripheral nervous system +relationship: BFO:0000066 UBERON:0000010 ! occurs in peripheral nervous system [Term] id: GO:0032330 @@ -67981,8 +67615,8 @@ def: "Any process that modulates the frequency, rate or extent of chondrocyte di is_a: GO:0045595 ! regulation of cell differentiation is_a: GO:0061035 ! regulation of cartilage development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002062 ! chondrocyte differentiation -relationship: regulates GO:0002062 ! chondrocyte differentiation +intersection_of: RO:0002211 GO:0002062 ! regulates (processual) chondrocyte differentiation +relationship: RO:0002211 GO:0002062 ! regulates (processual) chondrocyte differentiation [Term] id: GO:0032331 @@ -67997,8 +67631,8 @@ is_a: GO:0032330 ! regulation of chondrocyte differentiation is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:0061037 ! negative regulation of cartilage development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002062 ! chondrocyte differentiation -relationship: negatively_regulates GO:0002062 ! chondrocyte differentiation +intersection_of: RO:0002212 GO:0002062 ! negatively regulates chondrocyte differentiation +relationship: RO:0002212 GO:0002062 ! negatively regulates chondrocyte differentiation [Term] id: GO:0032332 @@ -68014,8 +67648,8 @@ is_a: GO:0032330 ! regulation of chondrocyte differentiation is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:0061036 ! positive regulation of cartilage development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002062 ! chondrocyte differentiation -relationship: positively_regulates GO:0002062 ! chondrocyte differentiation +intersection_of: RO:0002213 GO:0002062 ! positively regulates chondrocyte differentiation +relationship: RO:0002213 GO:0002062 ! positively regulates chondrocyte differentiation [Term] id: GO:0032341 @@ -68023,15 +67657,15 @@ name: aldosterone metabolic process namespace: biological_process def: "The chemical reactions and pathways involving aldosterone, a corticosteroid hormone that is produced by the zona glomerulosa of the adrenal cortex and regulates salt (sodium and potassium) and water balance." [PMID:16527843] synonym: "aldosterone metabolism" EXACT [] -is_a: GO:0006081 ! cellular aldehyde metabolic process +is_a: GO:0006081 ! aldehyde metabolic process is_a: GO:0008207 ! C21-steroid hormone metabolic process is_a: GO:0008212 ! mineralocorticoid metabolic process is_a: GO:0034308 ! primary alcohol metabolic process -is_a: GO:0042180 ! cellular ketone metabolic process +is_a: GO:0042180 ! ketone metabolic process is_a: GO:0120254 ! olefinic compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:27584 ! aldosterone -relationship: has_primary_input_or_output CHEBI:27584 ! aldosterone +intersection_of: RO:0004007 CHEBI:27584 ! has primary input or output aldosterone +relationship: RO:0004007 CHEBI:27584 ! has primary input or output aldosterone [Term] id: GO:0032342 @@ -68046,8 +67680,8 @@ is_a: GO:0042181 ! ketone biosynthetic process is_a: GO:0046184 ! aldehyde biosynthetic process is_a: GO:0120255 ! olefinic compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:27584 ! aldosterone -relationship: has_primary_output CHEBI:27584 ! aldosterone +intersection_of: RO:0004008 CHEBI:27584 ! has primary output aldosterone +relationship: RO:0004008 CHEBI:27584 ! has primary output aldosterone [Term] id: GO:0032343 @@ -68062,8 +67696,8 @@ is_a: GO:0042182 ! ketone catabolic process is_a: GO:0046185 ! aldehyde catabolic process is_a: GO:0120256 ! olefinic compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:27584 ! aldosterone -relationship: has_primary_input CHEBI:27584 ! aldosterone +intersection_of: RO:0004009 CHEBI:27584 ! has primary input aldosterone +relationship: RO:0004009 CHEBI:27584 ! has primary input aldosterone [Term] id: GO:0032344 @@ -68071,12 +67705,13 @@ name: regulation of aldosterone metabolic process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving aldosterone." [GOC:mah] synonym: "regulation of aldosterone metabolism" EXACT [] -is_a: GO:0010565 ! regulation of cellular ketone metabolic process +is_a: GO:0010565 ! regulation of ketone metabolic process is_a: GO:0019218 ! regulation of steroid metabolic process is_a: GO:0032350 ! regulation of hormone metabolic process +is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032341 ! aldosterone metabolic process -relationship: regulates GO:0032341 ! aldosterone metabolic process +intersection_of: RO:0002211 GO:0032341 ! regulates (processual) aldosterone metabolic process +relationship: RO:0002211 GO:0032341 ! regulates (processual) aldosterone metabolic process [Term] id: GO:0032345 @@ -68088,14 +67723,13 @@ synonym: "down-regulation of aldosterone metabolic process" EXACT [] synonym: "downregulation of aldosterone metabolic process" EXACT [] synonym: "inhibition of aldosterone metabolic process" NARROW [] synonym: "negative regulation of aldosterone metabolism" EXACT [] -is_a: GO:0031324 ! negative regulation of cellular metabolic process is_a: GO:0032344 ! regulation of aldosterone metabolic process is_a: GO:0032351 ! negative regulation of hormone metabolic process is_a: GO:0045939 ! negative regulation of steroid metabolic process is_a: GO:0062014 ! negative regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032341 ! aldosterone metabolic process -relationship: negatively_regulates GO:0032341 ! aldosterone metabolic process +intersection_of: RO:0002212 GO:0032341 ! negatively regulates aldosterone metabolic process +relationship: RO:0002212 GO:0032341 ! negatively regulates aldosterone metabolic process [Term] id: GO:0032346 @@ -68108,14 +67742,13 @@ synonym: "stimulation of aldosterone metabolic process" NARROW [] synonym: "up regulation of aldosterone metabolic process" EXACT [] synonym: "up-regulation of aldosterone metabolic process" EXACT [] synonym: "upregulation of aldosterone metabolic process" EXACT [] -is_a: GO:0031325 ! positive regulation of cellular metabolic process is_a: GO:0032344 ! regulation of aldosterone metabolic process is_a: GO:0032352 ! positive regulation of hormone metabolic process is_a: GO:0045940 ! positive regulation of steroid metabolic process is_a: GO:0062013 ! positive regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032341 ! aldosterone metabolic process -relationship: positively_regulates GO:0032341 ! aldosterone metabolic process +intersection_of: RO:0002213 GO:0032341 ! positively regulates aldosterone metabolic process +relationship: RO:0002213 GO:0032341 ! positively regulates aldosterone metabolic process [Term] id: GO:0032347 @@ -68127,8 +67760,8 @@ is_a: GO:0032344 ! regulation of aldosterone metabolic process is_a: GO:0090030 ! regulation of steroid hormone biosynthetic process is_a: GO:1902930 ! regulation of alcohol biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032342 ! aldosterone biosynthetic process -relationship: regulates GO:0032342 ! aldosterone biosynthetic process +intersection_of: RO:0002211 GO:0032342 ! regulates (processual) aldosterone biosynthetic process +relationship: RO:0002211 GO:0032342 ! regulates (processual) aldosterone biosynthetic process [Term] id: GO:0032348 @@ -68144,8 +67777,8 @@ is_a: GO:0032347 ! regulation of aldosterone biosynthetic process is_a: GO:0090032 ! negative regulation of steroid hormone biosynthetic process is_a: GO:1902931 ! negative regulation of alcohol biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032342 ! aldosterone biosynthetic process -relationship: negatively_regulates GO:0032342 ! aldosterone biosynthetic process +intersection_of: RO:0002212 GO:0032342 ! negatively regulates aldosterone biosynthetic process +relationship: RO:0002212 GO:0032342 ! negatively regulates aldosterone biosynthetic process [Term] id: GO:0032349 @@ -68162,8 +67795,8 @@ is_a: GO:0032347 ! regulation of aldosterone biosynthetic process is_a: GO:0090031 ! positive regulation of steroid hormone biosynthetic process is_a: GO:1902932 ! positive regulation of alcohol biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032342 ! aldosterone biosynthetic process -relationship: positively_regulates GO:0032342 ! aldosterone biosynthetic process +intersection_of: RO:0002213 GO:0032342 ! positively regulates aldosterone biosynthetic process +relationship: RO:0002213 GO:0032342 ! positively regulates aldosterone biosynthetic process [Term] id: GO:0032350 @@ -68174,8 +67807,8 @@ synonym: "regulation of hormone metabolism" EXACT [] is_a: GO:0010817 ! regulation of hormone levels is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042445 ! hormone metabolic process -relationship: regulates GO:0042445 ! hormone metabolic process +intersection_of: RO:0002211 GO:0042445 ! regulates (processual) hormone metabolic process +relationship: RO:0002211 GO:0042445 ! regulates (processual) hormone metabolic process [Term] id: GO:0032351 @@ -68190,8 +67823,8 @@ synonym: "negative regulation of hormone metabolism" EXACT [] is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0032350 ! regulation of hormone metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042445 ! hormone metabolic process -relationship: negatively_regulates GO:0042445 ! hormone metabolic process +intersection_of: RO:0002212 GO:0042445 ! negatively regulates hormone metabolic process +relationship: RO:0002212 GO:0042445 ! negatively regulates hormone metabolic process [Term] id: GO:0032352 @@ -68207,8 +67840,8 @@ synonym: "upregulation of hormone metabolic process" EXACT [] is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0032350 ! regulation of hormone metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042445 ! hormone metabolic process -relationship: positively_regulates GO:0042445 ! hormone metabolic process +intersection_of: RO:0002213 GO:0042445 ! positively regulates hormone metabolic process +relationship: RO:0002213 GO:0042445 ! positively regulates hormone metabolic process [Term] id: GO:0032353 @@ -68219,12 +67852,12 @@ synonym: "down regulation of hormone biosynthetic process" EXACT [] synonym: "down-regulation of hormone biosynthetic process" EXACT [] synonym: "downregulation of hormone biosynthetic process" EXACT [] synonym: "inhibition of hormone biosynthetic process" NARROW [] -is_a: GO:0031327 ! negative regulation of cellular biosynthetic process +is_a: GO:0009890 ! negative regulation of biosynthetic process is_a: GO:0032351 ! negative regulation of hormone metabolic process is_a: GO:0046885 ! regulation of hormone biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042446 ! hormone biosynthetic process -relationship: negatively_regulates GO:0042446 ! hormone biosynthetic process +intersection_of: RO:0002212 GO:0042446 ! negatively regulates hormone biosynthetic process +relationship: RO:0002212 GO:0042446 ! negatively regulates hormone biosynthetic process [Term] id: GO:0032364 @@ -68235,8 +67868,8 @@ synonym: "cellular oxygen homeostasis" EXACT [] synonym: "oxygen homeostasis" BROAD [] is_a: GO:0055082 ! intracellular chemical homeostasis intersection_of: GO:0055082 ! intracellular chemical homeostasis -intersection_of: regulates_levels_of CHEBI:15379 ! dioxygen -relationship: regulates_levels_of CHEBI:15379 ! dioxygen +intersection_of: RO:0002332 CHEBI:15379 ! regulates levels of dioxygen +relationship: RO:0002332 CHEBI:15379 ! regulates levels of dioxygen property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24224" xsd:anyURI [Term] @@ -68247,10 +67880,10 @@ def: "The directed movement of lipids within cells." [GOC:mah] is_a: GO:0006869 ! lipid transport is_a: GO:0046907 ! intracellular transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:18059 ! lipid -intersection_of: occurs_in GO:0005622 ! intracellular anatomical structure -relationship: has_primary_input CHEBI:18059 ! lipid -relationship: occurs_in GO:0005622 ! intracellular anatomical structure +intersection_of: BFO:0000066 GO:0005622 ! occurs in intracellular anatomical structure +intersection_of: RO:0004009 CHEBI:18059 ! has primary input lipid +relationship: BFO:0000066 GO:0005622 ! occurs in intracellular anatomical structure +relationship: RO:0004009 CHEBI:18059 ! has primary input lipid [Term] id: GO:0032368 @@ -68260,9 +67893,9 @@ def: "Any process that modulates the frequency, rate or extent of the directed m is_a: GO:0051049 ! regulation of transport is_a: GO:1905952 ! regulation of lipid localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006869 ! lipid transport -relationship: regulates GO:0006869 ! lipid transport -relationship: regulates GO:0010876 ! lipid localization +intersection_of: RO:0002211 GO:0006869 ! regulates (processual) lipid transport +relationship: RO:0002211 GO:0006869 ! regulates (processual) lipid transport +relationship: RO:0002211 GO:0010876 ! regulates (processual) lipid localization [Term] id: GO:0032369 @@ -68277,9 +67910,9 @@ is_a: GO:0032368 ! regulation of lipid transport is_a: GO:0051051 ! negative regulation of transport is_a: GO:1905953 ! negative regulation of lipid localization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006869 ! lipid transport -relationship: negatively_regulates GO:0006869 ! lipid transport -relationship: negatively_regulates GO:0010876 ! lipid localization +intersection_of: RO:0002212 GO:0006869 ! negatively regulates lipid transport +relationship: RO:0002212 GO:0006869 ! negatively regulates lipid transport +relationship: RO:0002212 GO:0010876 ! negatively regulates lipid localization [Term] id: GO:0032370 @@ -68295,9 +67928,9 @@ is_a: GO:0032368 ! regulation of lipid transport is_a: GO:0051050 ! positive regulation of transport is_a: GO:1905954 ! positive regulation of lipid localization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006869 ! lipid transport -relationship: positively_regulates GO:0006869 ! lipid transport -relationship: positively_regulates GO:0010876 ! lipid localization +intersection_of: RO:0002213 GO:0006869 ! positively regulates lipid transport +relationship: RO:0002213 GO:0006869 ! positively regulates lipid transport +relationship: RO:0002213 GO:0010876 ! positively regulates lipid localization [Term] id: GO:0032377 @@ -68307,8 +67940,8 @@ def: "Any process that modulates the frequency, rate or extent of the directed m is_a: GO:0032368 ! regulation of lipid transport is_a: GO:0032386 ! regulation of intracellular transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032365 ! intracellular lipid transport -relationship: regulates GO:0032365 ! intracellular lipid transport +intersection_of: RO:0002211 GO:0032365 ! regulates (processual) intracellular lipid transport +relationship: RO:0002211 GO:0032365 ! regulates (processual) intracellular lipid transport [Term] id: GO:0032378 @@ -68323,8 +67956,8 @@ is_a: GO:0032369 ! negative regulation of lipid transport is_a: GO:0032377 ! regulation of intracellular lipid transport is_a: GO:0032387 ! negative regulation of intracellular transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032365 ! intracellular lipid transport -relationship: negatively_regulates GO:0032365 ! intracellular lipid transport +intersection_of: RO:0002212 GO:0032365 ! negatively regulates intracellular lipid transport +relationship: RO:0002212 GO:0032365 ! negatively regulates intracellular lipid transport [Term] id: GO:0032379 @@ -68340,8 +67973,8 @@ is_a: GO:0032370 ! positive regulation of lipid transport is_a: GO:0032377 ! regulation of intracellular lipid transport is_a: GO:0032388 ! positive regulation of intracellular transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032365 ! intracellular lipid transport -relationship: positively_regulates GO:0032365 ! intracellular lipid transport +intersection_of: RO:0002213 GO:0032365 ! positively regulates intracellular lipid transport +relationship: RO:0002213 GO:0032365 ! positively regulates intracellular lipid transport [Term] id: GO:0032386 @@ -68351,8 +67984,8 @@ def: "Any process that modulates the frequency, rate or extent of the directed m is_a: GO:0051049 ! regulation of transport is_a: GO:0060341 ! regulation of cellular localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0046907 ! intracellular transport -relationship: regulates GO:0046907 ! intracellular transport +intersection_of: RO:0002211 GO:0046907 ! regulates (processual) intracellular transport +relationship: RO:0002211 GO:0046907 ! regulates (processual) intracellular transport [Term] id: GO:0032387 @@ -68367,8 +68000,8 @@ is_a: GO:0032386 ! regulation of intracellular transport is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:0051051 ! negative regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0046907 ! intracellular transport -relationship: negatively_regulates GO:0046907 ! intracellular transport +intersection_of: RO:0002212 GO:0046907 ! negatively regulates intracellular transport +relationship: RO:0002212 GO:0046907 ! negatively regulates intracellular transport [Term] id: GO:0032388 @@ -68384,8 +68017,8 @@ is_a: GO:0032386 ! regulation of intracellular transport is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0051050 ! positive regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0046907 ! intracellular transport -relationship: positively_regulates GO:0046907 ! intracellular transport +intersection_of: RO:0002213 GO:0046907 ! positively regulates intracellular transport +relationship: RO:0002213 GO:0046907 ! positively regulates intracellular transport [Term] id: GO:0032400 @@ -68395,8 +68028,8 @@ def: "Any process in which a melanosome is transported to, and/or maintained in, synonym: "melanosome localisation" EXACT [GOC:mah] is_a: GO:0051875 ! pigment granule localization intersection_of: GO:0051179 ! localization -intersection_of: has_primary_input GO:0042470 ! melanosome -relationship: has_primary_input GO:0042470 ! melanosome +intersection_of: RO:0004009 GO:0042470 ! has primary input melanosome +relationship: RO:0004009 GO:0042470 ! has primary input melanosome [Term] id: GO:0032401 @@ -68416,26 +68049,26 @@ is_a: GO:0032400 ! melanosome localization is_a: GO:0032401 ! establishment of melanosome localization is_a: GO:0051904 ! pigment granule transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input GO:0042470 ! melanosome -relationship: has_primary_input GO:0042470 ! melanosome +intersection_of: RO:0004009 GO:0042470 ! has primary input melanosome +relationship: RO:0004009 GO:0042470 ! has primary input melanosome [Term] id: GO:0032409 name: regulation of transporter activity namespace: biological_process def: "Any process that modulates the activity of a transporter." [GOC:mah] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate is_a: GO:0065009 ! regulation of molecular function intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0005215 ! transporter activity -relationship: regulates GO:0005215 ! transporter activity +intersection_of: RO:0002211 GO:0005215 ! regulates (processual) transporter activity +relationship: RO:0002211 GO:0005215 ! regulates (processual) transporter activity [Term] id: GO:0032410 name: negative regulation of transporter activity namespace: biological_process def: "Any process that stops or reduces the activity of a transporter." [GOC:mah] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "down regulation of transporter activity" EXACT [] synonym: "down-regulation of transporter activity" EXACT [] synonym: "downregulation of transporter activity" EXACT [] @@ -68444,15 +68077,15 @@ is_a: GO:0032409 ! regulation of transporter activity is_a: GO:0044092 ! negative regulation of molecular function is_a: GO:0051051 ! negative regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0005215 ! transporter activity -relationship: negatively_regulates GO:0005215 ! transporter activity +intersection_of: RO:0002212 GO:0005215 ! negatively regulates transporter activity +relationship: RO:0002212 GO:0005215 ! negatively regulates transporter activity [Term] id: GO:0032411 name: positive regulation of transporter activity namespace: biological_process def: "Any process that activates or increases the activity of a transporter." [GOC:mah] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "activation of transporter activity" NARROW [] synonym: "stimulation of transporter activity" NARROW [] synonym: "up regulation of transporter activity" EXACT [] @@ -68462,28 +68095,28 @@ is_a: GO:0032409 ! regulation of transporter activity is_a: GO:0044093 ! positive regulation of molecular function is_a: GO:0051050 ! positive regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0005215 ! transporter activity -relationship: positively_regulates GO:0005215 ! transporter activity +intersection_of: RO:0002213 GO:0005215 ! positively regulates transporter activity +relationship: RO:0002213 GO:0005215 ! positively regulates transporter activity [Term] id: GO:0032412 name: regulation of monoatomic ion transmembrane transporter activity namespace: biological_process def: "Any process that modulates the activity of an ion transporter." [GOC:mah, GOC:tb] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "regulation of ion transmembrane transporter activity" BROAD [] synonym: "regulation of ion transporter activity" EXACT [GOC:tb] is_a: GO:0022898 ! regulation of transmembrane transporter activity intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0015075 ! monoatomic ion transmembrane transporter activity -relationship: regulates GO:0015075 ! monoatomic ion transmembrane transporter activity +intersection_of: RO:0002211 GO:0015075 ! regulates (processual) monoatomic ion transmembrane transporter activity +relationship: RO:0002211 GO:0015075 ! regulates (processual) monoatomic ion transmembrane transporter activity [Term] id: GO:0032413 name: negative regulation of ion transmembrane transporter activity namespace: biological_process def: "Any process that stops or reduces the activity of an ion transporter." [GOC:mah, GOC:tb] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "down regulation of ion transporter activity" EXACT [] synonym: "down-regulation of ion transporter activity" EXACT [] synonym: "downregulation of ion transporter activity" EXACT [] @@ -68493,16 +68126,16 @@ is_a: GO:0032410 ! negative regulation of transporter activity is_a: GO:0032412 ! regulation of monoatomic ion transmembrane transporter activity is_a: GO:0034766 ! negative regulation of monoatomic ion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0015075 ! monoatomic ion transmembrane transporter activity -relationship: negatively_regulates GO:0015075 ! monoatomic ion transmembrane transporter activity -relationship: negatively_regulates GO:0034220 ! monoatomic ion transmembrane transport +intersection_of: RO:0002212 GO:0015075 ! negatively regulates monoatomic ion transmembrane transporter activity +relationship: RO:0002212 GO:0015075 ! negatively regulates monoatomic ion transmembrane transporter activity +relationship: RO:0002212 GO:0034220 ! negatively regulates monoatomic ion transmembrane transport [Term] id: GO:0032414 name: positive regulation of ion transmembrane transporter activity namespace: biological_process def: "Any process that activates or increases the activity of an ion transporter." [GOC:mah, GOC:tb] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "activation of ion transporter activity" NARROW [] synonym: "positive regulation of ion transporter activity" EXACT [GOC:tb] synonym: "stimulation of ion transporter activity" NARROW [] @@ -68513,9 +68146,9 @@ is_a: GO:0032411 ! positive regulation of transporter activity is_a: GO:0032412 ! regulation of monoatomic ion transmembrane transporter activity is_a: GO:0034767 ! positive regulation of monoatomic ion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0015075 ! monoatomic ion transmembrane transporter activity -relationship: positively_regulates GO:0015075 ! monoatomic ion transmembrane transporter activity -relationship: positively_regulates GO:0034220 ! monoatomic ion transmembrane transport +intersection_of: RO:0002213 GO:0015075 ! positively regulates monoatomic ion transmembrane transporter activity +relationship: RO:0002213 GO:0015075 ! positively regulates monoatomic ion transmembrane transporter activity +relationship: RO:0002213 GO:0034220 ! positively regulates monoatomic ion transmembrane transport [Term] id: GO:0032418 @@ -68525,8 +68158,8 @@ def: "Any process in which a lysosome is transported to, and/or maintained in, a synonym: "lysosome localisation" EXACT [GOC:mah] is_a: GO:1990849 ! vacuolar localization intersection_of: GO:0051179 ! localization -intersection_of: has_primary_input GO:0005764 ! lysosome -relationship: has_primary_input GO:0005764 ! lysosome +intersection_of: RO:0004009 GO:0005764 ! has primary input lysosome +relationship: RO:0004009 GO:0005764 ! has primary input lysosome [Term] id: GO:0032432 @@ -68536,7 +68169,7 @@ alt_id: GO:0000141 alt_id: GO:0030482 def: "An assembly of actin filaments that are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness." [GOC:mah] synonym: "actin cable" RELATED [GOC:mah] -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: has_part GO:0005884 ! actin filament relationship: part_of GO:0005856 ! cytoskeleton relationship: part_of GO:0015629 ! actin cytoskeleton @@ -68550,8 +68183,8 @@ synonym: "melanosome organisation" EXACT [GOC:mah] synonym: "melanosome organization and biogenesis" RELATED [GOC:mah] is_a: GO:0048753 ! pigment granule organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0042470 ! melanosome -relationship: results_in_organization_of GO:0042470 ! melanosome +intersection_of: RO:0002592 GO:0042470 ! results in organization of melanosome +relationship: RO:0002592 GO:0042470 ! results in organization of melanosome [Term] id: GO:0032468 @@ -68564,10 +68197,10 @@ synonym: "regulation of calcium ion concentration in Golgi" EXACT [] synonym: "regulation of Golgi calcium ion concentration" EXACT [] is_a: GO:0006874 ! intracellular calcium ion homeostasis intersection_of: GO:0055074 ! calcium ion homeostasis -intersection_of: occurs_in GO:0005794 ! Golgi apparatus +intersection_of: BFO:0000066 GO:0005794 ! occurs in Golgi apparatus +relationship: BFO:0000066 GO:0005794 ! occurs in Golgi apparatus relationship: in_taxon NCBITaxon:2759 {all_only="true"} ! Eukaryota -relationship: occurs_in GO:0005794 ! Golgi apparatus -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota [Term] id: GO:0032472 @@ -68577,10 +68210,10 @@ def: "The directed movement of calcium ions (Ca2+) into, out of or within the Go synonym: "Golgi calcium transport" EXACT [] is_a: GO:0006816 ! calcium ion transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29108 ! calcium(2+) -intersection_of: results_in_transport_to_from_or_in GO:0005794 ! Golgi apparatus -relationship: has_primary_input CHEBI:29108 ! calcium(2+) -relationship: results_in_transport_to_from_or_in GO:0005794 ! Golgi apparatus +intersection_of: RO:0002344 GO:0005794 ! results in transport to from or in Golgi apparatus +intersection_of: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) +relationship: RO:0002344 GO:0005794 ! results in transport to from or in Golgi apparatus +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) [Term] id: GO:0032474 @@ -68589,10 +68222,10 @@ namespace: biological_process def: "The process in which the anatomical structures of an otolith are generated and organized." [GOC:dgh] is_a: GO:0048598 ! embryonic morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002280 ! otolith +intersection_of: RO:0002298 UBERON:0002280 ! results in morphogenesis of otolith relationship: part_of GO:0042472 ! inner ear morphogenesis relationship: part_of GO:0048840 ! otolith development -relationship: results_in_morphogenesis_of UBERON:0002280 ! otolith +relationship: RO:0002298 UBERON:0002280 ! results in morphogenesis of otolith [Term] id: GO:0032475 @@ -68601,9 +68234,9 @@ namespace: biological_process def: "The process that gives rise to an otolith. This process pertains to the initial formation of a structure from unspecified parts." [GOC:dgh] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002280 ! otolith +intersection_of: RO:0002297 UBERON:0002280 ! results in formation of anatomical entity otolith relationship: part_of GO:0032474 ! otolith morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002280 ! otolith +relationship: RO:0002297 UBERON:0002280 ! results in formation of anatomical entity otolith [Term] id: GO:0032501 @@ -68652,11 +68285,11 @@ synonym: "maintenance of protein localization in cell" RELATED [GOC:dph, GOC:tb] is_a: GO:0045185 ! maintenance of protein location is_a: GO:0051651 ! maintenance of location in cell intersection_of: GO:0045185 ! maintenance of protein location -intersection_of: occurs_in CL:0000000 ! cell +intersection_of: BFO:0000066 CL:0000000 ! occurs in cell +relationship: BFO:0000066 CL:0000000 ! occurs in cell relationship: in_taxon NCBITaxon:131567 {all_only="true"} ! cellular organisms -relationship: occurs_in CL:0000000 ! cell -relationship: only_in_taxon NCBITaxon:131567 ! cellular organisms relationship: part_of GO:0008104 ! protein localization +relationship: RO:0002160 NCBITaxon:131567 ! only in taxon cellular organisms [Term] id: GO:0032528 @@ -68667,9 +68300,9 @@ synonym: "microvillus organisation" EXACT [GOC:mah] synonym: "microvillus organization and biogenesis" RELATED [GOC:mah] is_a: GO:0120036 ! plasma membrane bounded cell projection organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005902 ! microvillus +intersection_of: RO:0002592 GO:0005902 ! results in organization of microvillus relationship: never_in_taxon NCBITaxon:4751 ! Fungi -relationship: results_in_organization_of GO:0005902 ! microvillus +relationship: RO:0002592 GO:0005902 ! results in organization of microvillus [Term] id: GO:0032529 @@ -68680,8 +68313,8 @@ synonym: "follicle cell microvillus organisation" EXACT [GOC:mah] synonym: "follicle cell microvillus organization and biogenesis" RELATED [GOC:mah] is_a: GO:0032528 ! microvillus organization intersection_of: GO:0032528 ! microvillus organization -intersection_of: occurs_in CL:0000477 ! follicle cell of egg chamber -relationship: occurs_in CL:0000477 ! follicle cell of egg chamber +intersection_of: BFO:0000066 CL:0000477 ! occurs in follicle cell of egg chamber +relationship: BFO:0000066 CL:0000477 ! occurs in follicle cell of egg chamber [Term] id: GO:0032530 @@ -68692,8 +68325,8 @@ synonym: "regulation of microvillus organisation" EXACT [GOC:mah] synonym: "regulation of microvillus organization and biogenesis" RELATED [GOC:mah] is_a: GO:0120035 ! regulation of plasma membrane bounded cell projection organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032528 ! microvillus organization -relationship: regulates GO:0032528 ! microvillus organization +intersection_of: RO:0002211 GO:0032528 ! regulates (processual) microvillus organization +relationship: RO:0002211 GO:0032528 ! regulates (processual) microvillus organization [Term] id: GO:0032531 @@ -68704,8 +68337,8 @@ synonym: "regulation of follicle cell microvillus organisation" EXACT [GOC:mah] synonym: "regulation of follicle cell microvillus organization and biogenesis" RELATED [GOC:mah] is_a: GO:0032530 ! regulation of microvillus organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032529 ! follicle cell microvillus organization -relationship: regulates GO:0032529 ! follicle cell microvillus organization +intersection_of: RO:0002211 GO:0032529 ! regulates (processual) follicle cell microvillus organization +relationship: RO:0002211 GO:0032529 ! regulates (processual) follicle cell microvillus organization [Term] id: GO:0032534 @@ -68716,8 +68349,8 @@ synonym: "regulation of microvillus biogenesis" RELATED [GOC:mah] is_a: GO:0032530 ! regulation of microvillus organization is_a: GO:0120032 ! regulation of plasma membrane bounded cell projection assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030033 ! microvillus assembly -relationship: regulates GO:0030033 ! microvillus assembly +intersection_of: RO:0002211 GO:0030033 ! regulates (processual) microvillus assembly +relationship: RO:0002211 GO:0030033 ! regulates (processual) microvillus assembly [Term] id: GO:0032549 @@ -68726,8 +68359,8 @@ namespace: molecular_function def: "Binding to a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose." [GOC:mah] is_a: GO:0001882 ! nucleoside binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:18254 ! ribonucleoside -relationship: has_primary_input CHEBI:18254 ! ribonucleoside +intersection_of: RO:0004009 CHEBI:18254 ! has primary input ribonucleoside +relationship: RO:0004009 CHEBI:18254 ! has primary input ribonucleoside [Term] id: GO:0032550 @@ -68737,8 +68370,8 @@ def: "Binding to a purine ribonucleoside, a compound consisting of a purine base is_a: GO:0001883 ! purine nucleoside binding is_a: GO:0032549 ! ribonucleoside binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:26399 ! purine ribonucleoside -relationship: has_primary_input CHEBI:26399 ! purine ribonucleoside +intersection_of: RO:0004009 CHEBI:26399 ! has primary input purine ribonucleoside +relationship: RO:0004009 CHEBI:26399 ! has primary input purine ribonucleoside [Term] id: GO:0032553 @@ -68748,8 +68381,8 @@ def: "Binding to a ribonucleotide, any compound consisting of a ribonucleoside t is_a: GO:0000166 ! nucleotide binding is_a: GO:0097367 ! carbohydrate derivative binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:26561 ! ribonucleotide -relationship: has_primary_input CHEBI:26561 ! ribonucleotide +intersection_of: RO:0004009 CHEBI:26561 ! has primary input ribonucleotide +relationship: RO:0004009 CHEBI:26561 ! has primary input ribonucleotide [Term] id: GO:0032555 @@ -68759,8 +68392,8 @@ def: "Binding to a purine ribonucleotide, any compound consisting of a purine ri is_a: GO:0017076 ! purine nucleotide binding is_a: GO:0032553 ! ribonucleotide binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:26400 ! purine ribonucleotide -relationship: has_primary_input CHEBI:26400 ! purine ribonucleotide +intersection_of: RO:0004009 CHEBI:26400 ! has primary input purine ribonucleotide +relationship: RO:0004009 CHEBI:26400 ! has primary input purine ribonucleotide [Term] id: GO:0032559 @@ -68770,8 +68403,8 @@ def: "Binding to an adenyl ribonucleotide, any compound consisting of adenosine is_a: GO:0030554 ! adenyl nucleotide binding is_a: GO:0032555 ! purine ribonucleotide binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:61296 ! adenyl ribonucleotide -relationship: has_primary_input CHEBI:61296 ! adenyl ribonucleotide +intersection_of: RO:0004009 CHEBI:61296 ! has primary input adenyl ribonucleotide +relationship: RO:0004009 CHEBI:61296 ! has primary input adenyl ribonucleotide [Term] id: GO:0032570 @@ -68782,8 +68415,8 @@ synonym: "response to progesterone stimulus" EXACT [GOC:dos] is_a: GO:0048545 ! response to steroid hormone is_a: GO:1901654 ! response to ketone intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:17026 ! progesterone -relationship: has_primary_input CHEBI:17026 ! progesterone +intersection_of: RO:0004009 CHEBI:17026 ! has primary input progesterone +relationship: RO:0004009 CHEBI:17026 ! has primary input progesterone [Term] id: GO:0032589 @@ -68819,8 +68452,8 @@ synonym: "receptor transport within lipid bilayer" NARROW [] is_a: GO:0006886 ! intracellular protein transport is_a: GO:0061024 ! membrane organization intersection_of: GO:0015031 ! protein transport -intersection_of: occurs_in GO:0016020 ! membrane -relationship: occurs_in GO:0016020 ! membrane +intersection_of: BFO:0000066 GO:0016020 ! occurs in membrane +relationship: BFO:0000066 GO:0016020 ! occurs in membrane [Term] id: GO:0032609 @@ -68849,8 +68482,8 @@ synonym: "regulation of interferon-gamma production" EXACT [] synonym: "regulation of interferon-gamma secretion" NARROW [] is_a: GO:0001817 ! regulation of cytokine production intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032609 ! type II interferon production -relationship: regulates GO:0032609 ! type II interferon production +intersection_of: RO:0002211 GO:0032609 ! regulates (processual) type II interferon production +relationship: RO:0002211 GO:0032609 ! regulates (processual) type II interferon production [Term] id: GO:0032689 @@ -68869,8 +68502,8 @@ synonym: "negative regulation of interferon-gamma secretion" NARROW [] is_a: GO:0001818 ! negative regulation of cytokine production is_a: GO:0032649 ! regulation of type II interferon production intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032609 ! type II interferon production -relationship: negatively_regulates GO:0032609 ! type II interferon production +intersection_of: RO:0002212 GO:0032609 ! negatively regulates type II interferon production +relationship: RO:0002212 GO:0032609 ! negatively regulates type II interferon production [Term] id: GO:0032729 @@ -68890,10 +68523,10 @@ synonym: "upregulation of interferon-gamma production" EXACT [] is_a: GO:0001819 ! positive regulation of cytokine production is_a: GO:0032649 ! regulation of type II interferon production intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032609 ! type II interferon production +intersection_of: RO:0002213 GO:0032609 ! positively regulates type II interferon production relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa -relationship: positively_regulates GO:0032609 ! type II interferon production +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa +relationship: RO:0002213 GO:0032609 ! positively regulates type II interferon production [Term] id: GO:0032774 @@ -68914,8 +68547,8 @@ synonym: "RNA synthesis" EXACT [] is_a: GO:0016070 ! RNA metabolic process is_a: GO:0141187 ! nucleic acid biosynthetic process intersection_of: GO:0009059 ! macromolecule biosynthetic process -intersection_of: has_primary_output CHEBI:33697 ! ribonucleic acid -relationship: has_primary_output CHEBI:33697 ! ribonucleic acid +intersection_of: RO:0004008 CHEBI:33697 ! has primary output ribonucleic acid +relationship: RO:0004008 CHEBI:33697 ! has primary output ribonucleic acid [Term] id: GO:0032782 @@ -68925,8 +68558,8 @@ def: "The regulated release of bile acid, composed of any of a group of steroid is_a: GO:0015718 ! monocarboxylic acid transport is_a: GO:0046717 ! acid secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:36235 ! bile acid anion -relationship: has_primary_input CHEBI:36235 ! bile acid anion +intersection_of: RO:0004009 CHEBI:36235 ! has primary input bile acid anion +relationship: RO:0004009 CHEBI:36235 ! has primary input bile acid anion [Term] id: GO:0032787 @@ -68938,8 +68571,8 @@ synonym: "monocarboxylate metabolic process" EXACT [] synonym: "monocarboxylic acid metabolism" EXACT [] is_a: GO:0019752 ! carboxylic acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:35757 ! monocarboxylic acid anion -relationship: has_primary_input_or_output CHEBI:35757 ! monocarboxylic acid anion +intersection_of: RO:0004007 CHEBI:35757 ! has primary input or output monocarboxylic acid anion +relationship: RO:0004007 CHEBI:35757 ! has primary input or output monocarboxylic acid anion [Term] id: GO:0032790 @@ -68950,8 +68583,8 @@ synonym: "ribosome dissociation factor" RELATED [] synonym: "ribosome recycling" NARROW [GOC:db, PMID:9463391] is_a: GO:1903008 ! organelle disassembly intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0005840 ! ribosome -relationship: results_in_disassembly_of GO:0005840 ! ribosome +intersection_of: RO:0002590 GO:0005840 ! results in disassembly of ribosome +relationship: RO:0002590 GO:0005840 ! results in disassembly of ribosome [Term] id: GO:0032808 @@ -68960,9 +68593,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the lacrimal gland over time, from its formation to the mature structure. The lacrimal gland produces secretions that lubricate and protect the cornea of the eye." [GOC:ln] is_a: GO:0048732 ! gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001817 ! lacrimal gland +intersection_of: RO:0002296 UBERON:0001817 ! results in development of lacrimal gland relationship: part_of GO:0035272 ! exocrine system development -relationship: results_in_development_of UBERON:0001817 ! lacrimal gland +relationship: RO:0002296 UBERON:0001817 ! results in development of lacrimal gland [Term] id: GO:0032811 @@ -68977,8 +68610,8 @@ synonym: "negative regulation of adrenaline secretion" EXACT [] is_a: GO:0014060 ! regulation of epinephrine secretion is_a: GO:0051048 ! negative regulation of secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048242 ! epinephrine secretion -relationship: negatively_regulates GO:0048242 ! epinephrine secretion +intersection_of: RO:0002212 GO:0048242 ! negatively regulates epinephrine secretion +relationship: RO:0002212 GO:0048242 ! negatively regulates epinephrine secretion [Term] id: GO:0032812 @@ -68994,8 +68627,8 @@ synonym: "upregulation of epinephrine secretion" EXACT [] is_a: GO:0014060 ! regulation of epinephrine secretion is_a: GO:0051047 ! positive regulation of secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048242 ! epinephrine secretion -relationship: positively_regulates GO:0048242 ! epinephrine secretion +intersection_of: RO:0002213 GO:0048242 ! positively regulates epinephrine secretion +relationship: RO:0002213 GO:0048242 ! positively regulates epinephrine secretion [Term] id: GO:0032814 @@ -69005,8 +68638,8 @@ def: "Any process that modulates the frequency, rate or extent of natural killer synonym: "regulation of NK cell activation" EXACT [] is_a: GO:0051249 ! regulation of lymphocyte activation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030101 ! natural killer cell activation -relationship: regulates GO:0030101 ! natural killer cell activation +intersection_of: RO:0002211 GO:0030101 ! regulates (processual) natural killer cell activation +relationship: RO:0002211 GO:0030101 ! regulates (processual) natural killer cell activation [Term] id: GO:0032815 @@ -69021,8 +68654,8 @@ synonym: "negative regulation of NK cell activation" EXACT [] is_a: GO:0032814 ! regulation of natural killer cell activation is_a: GO:0051250 ! negative regulation of lymphocyte activation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030101 ! natural killer cell activation -relationship: negatively_regulates GO:0030101 ! natural killer cell activation +intersection_of: RO:0002212 GO:0030101 ! negatively regulates natural killer cell activation +relationship: RO:0002212 GO:0030101 ! negatively regulates natural killer cell activation [Term] id: GO:0032816 @@ -69038,8 +68671,8 @@ synonym: "upregulation of natural killer cell activation" EXACT [] is_a: GO:0032814 ! regulation of natural killer cell activation is_a: GO:0051251 ! positive regulation of lymphocyte activation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030101 ! natural killer cell activation -relationship: positively_regulates GO:0030101 ! natural killer cell activation +intersection_of: RO:0002213 GO:0030101 ! positively regulates natural killer cell activation +relationship: RO:0002213 GO:0030101 ! positively regulates natural killer cell activation [Term] id: GO:0032817 @@ -69050,8 +68683,8 @@ synonym: "regulation of NK cell proliferation" EXACT [] is_a: GO:0032814 ! regulation of natural killer cell activation is_a: GO:0050670 ! regulation of lymphocyte proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001787 ! natural killer cell proliferation -relationship: regulates GO:0001787 ! natural killer cell proliferation +intersection_of: RO:0002211 GO:0001787 ! regulates (processual) natural killer cell proliferation +relationship: RO:0002211 GO:0001787 ! regulates (processual) natural killer cell proliferation [Term] id: GO:0032818 @@ -69067,8 +68700,8 @@ is_a: GO:0032815 ! negative regulation of natural killer cell activation is_a: GO:0032817 ! regulation of natural killer cell proliferation is_a: GO:0050672 ! negative regulation of lymphocyte proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001787 ! natural killer cell proliferation -relationship: negatively_regulates GO:0001787 ! natural killer cell proliferation +intersection_of: RO:0002212 GO:0001787 ! negatively regulates natural killer cell proliferation +relationship: RO:0002212 GO:0001787 ! negatively regulates natural killer cell proliferation [Term] id: GO:0032819 @@ -69085,8 +68718,8 @@ is_a: GO:0032816 ! positive regulation of natural killer cell activation is_a: GO:0032817 ! regulation of natural killer cell proliferation is_a: GO:0050671 ! positive regulation of lymphocyte proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001787 ! natural killer cell proliferation -relationship: positively_regulates GO:0001787 ! natural killer cell proliferation +intersection_of: RO:0002213 GO:0001787 ! positively regulates natural killer cell proliferation +relationship: RO:0002213 GO:0001787 ! positively regulates natural killer cell proliferation [Term] id: GO:0032820 @@ -69099,9 +68732,9 @@ is_a: GO:0002697 ! regulation of immune effector process is_a: GO:0032817 ! regulation of natural killer cell proliferation is_a: GO:0050776 ! regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002324 ! natural killer cell proliferation involved in immune response -relationship: regulates GO:0002324 ! natural killer cell proliferation involved in immune response -relationship: regulates GO:0006955 ! immune response +intersection_of: RO:0002211 GO:0002324 ! regulates (processual) natural killer cell proliferation involved in immune response +relationship: RO:0002211 GO:0002324 ! regulates (processual) natural killer cell proliferation involved in immune response +relationship: RO:0002211 GO:0006955 ! regulates (processual) immune response [Term] id: GO:0032821 @@ -69119,9 +68752,9 @@ is_a: GO:0032818 ! negative regulation of natural killer cell proliferation is_a: GO:0032820 ! regulation of natural killer cell proliferation involved in immune response is_a: GO:0050777 ! negative regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002324 ! natural killer cell proliferation involved in immune response -relationship: negatively_regulates GO:0002324 ! natural killer cell proliferation involved in immune response -relationship: negatively_regulates GO:0006955 ! immune response +intersection_of: RO:0002212 GO:0002324 ! negatively regulates natural killer cell proliferation involved in immune response +relationship: RO:0002212 GO:0002324 ! negatively regulates natural killer cell proliferation involved in immune response +relationship: RO:0002212 GO:0006955 ! negatively regulates immune response [Term] id: GO:0032822 @@ -69139,8 +68772,8 @@ is_a: GO:0002699 ! positive regulation of immune effector process is_a: GO:0032819 ! positive regulation of natural killer cell proliferation is_a: GO:0032820 ! regulation of natural killer cell proliferation involved in immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002324 ! natural killer cell proliferation involved in immune response -relationship: positively_regulates GO:0002324 ! natural killer cell proliferation involved in immune response +intersection_of: RO:0002213 GO:0002324 ! positively regulates natural killer cell proliferation involved in immune response +relationship: RO:0002213 GO:0002324 ! positively regulates natural killer cell proliferation involved in immune response [Term] id: GO:0032823 @@ -69153,8 +68786,8 @@ synonym: "regulation of NK cell differentiation" EXACT [] is_a: GO:0032814 ! regulation of natural killer cell activation is_a: GO:0045619 ! regulation of lymphocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001779 ! natural killer cell differentiation -relationship: regulates GO:0001779 ! natural killer cell differentiation +intersection_of: RO:0002211 GO:0001779 ! regulates (processual) natural killer cell differentiation +relationship: RO:0002211 GO:0001779 ! regulates (processual) natural killer cell differentiation [Term] id: GO:0032824 @@ -69172,8 +68805,8 @@ is_a: GO:0032815 ! negative regulation of natural killer cell activation is_a: GO:0032823 ! regulation of natural killer cell differentiation is_a: GO:0045620 ! negative regulation of lymphocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001779 ! natural killer cell differentiation -relationship: negatively_regulates GO:0001779 ! natural killer cell differentiation +intersection_of: RO:0002212 GO:0001779 ! negatively regulates natural killer cell differentiation +relationship: RO:0002212 GO:0001779 ! negatively regulates natural killer cell differentiation [Term] id: GO:0032825 @@ -69192,8 +68825,8 @@ is_a: GO:0032816 ! positive regulation of natural killer cell activation is_a: GO:0032823 ! regulation of natural killer cell differentiation is_a: GO:0045621 ! positive regulation of lymphocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001779 ! natural killer cell differentiation -relationship: positively_regulates GO:0001779 ! natural killer cell differentiation +intersection_of: RO:0002213 GO:0001779 ! positively regulates natural killer cell differentiation +relationship: RO:0002213 GO:0001779 ! positively regulates natural killer cell differentiation [Term] id: GO:0032826 @@ -69207,8 +68840,8 @@ synonym: "regulation of NK cell differentiation during immune response" RELATED is_a: GO:0002697 ! regulation of immune effector process is_a: GO:0032823 ! regulation of natural killer cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002325 ! natural killer cell differentiation involved in immune response -relationship: regulates GO:0002325 ! natural killer cell differentiation involved in immune response +intersection_of: RO:0002211 GO:0002325 ! regulates (processual) natural killer cell differentiation involved in immune response +relationship: RO:0002211 GO:0002325 ! regulates (processual) natural killer cell differentiation involved in immune response [Term] id: GO:0032827 @@ -69228,9 +68861,9 @@ is_a: GO:0032824 ! negative regulation of natural killer cell differentiation is_a: GO:0032826 ! regulation of natural killer cell differentiation involved in immune response is_a: GO:0050777 ! negative regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002325 ! natural killer cell differentiation involved in immune response -relationship: negatively_regulates GO:0002325 ! natural killer cell differentiation involved in immune response -relationship: negatively_regulates GO:0006955 ! immune response +intersection_of: RO:0002212 GO:0002325 ! negatively regulates natural killer cell differentiation involved in immune response +relationship: RO:0002212 GO:0002325 ! negatively regulates natural killer cell differentiation involved in immune response +relationship: RO:0002212 GO:0006955 ! negatively regulates immune response [Term] id: GO:0032828 @@ -69251,9 +68884,9 @@ is_a: GO:0032825 ! positive regulation of natural killer cell differentiation is_a: GO:0032826 ! regulation of natural killer cell differentiation involved in immune response is_a: GO:0050778 ! positive regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002325 ! natural killer cell differentiation involved in immune response -relationship: positively_regulates GO:0002325 ! natural killer cell differentiation involved in immune response -relationship: positively_regulates GO:0006955 ! immune response +intersection_of: RO:0002213 GO:0002325 ! positively regulates natural killer cell differentiation involved in immune response +relationship: RO:0002213 GO:0002325 ! positively regulates natural killer cell differentiation involved in immune response +relationship: RO:0002213 GO:0006955 ! positively regulates immune response [Term] id: GO:0032835 @@ -69263,9 +68896,9 @@ def: "The progression of the glomerulus over time from its initial formation unt synonym: "glomerular development" EXACT [] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000074 ! renal glomerulus +intersection_of: RO:0002296 UBERON:0000074 ! results in development of renal glomerulus relationship: part_of GO:0072006 ! nephron development -relationship: results_in_development_of UBERON:0000074 ! renal glomerulus +relationship: RO:0002296 UBERON:0000074 ! results in development of renal glomerulus [Term] id: GO:0032836 @@ -69275,9 +68908,9 @@ def: "The process whose specific outcome is the progression of the glomerular ba is_a: GO:0030198 ! extracellular matrix organization is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005777 ! glomerular basement membrane +intersection_of: RO:0002296 UBERON:0005777 ! results in development of glomerular basement membrane relationship: part_of GO:0032835 ! glomerulus development -relationship: results_in_development_of UBERON:0005777 ! glomerular basement membrane +relationship: RO:0002296 UBERON:0005777 ! results in development of glomerular basement membrane [Term] id: GO:0032838 @@ -69309,8 +68942,8 @@ namespace: molecular_function def: "Binding to calcitonin, a peptide hormone responsible for reducing serum calcium levels by inhibiting osteoclastic bone reabsorption and promoting renal calcium excretion. It is synthesized and released by the C cells of the thyroid." [GOC:ecd] is_a: GO:0097644 ! calcitonin family binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:3306 ! calcitonin -relationship: has_primary_input CHEBI:3306 ! calcitonin +intersection_of: RO:0004009 CHEBI:3306 ! has primary input calcitonin +relationship: RO:0004009 CHEBI:3306 ! has primary input calcitonin [Term] id: GO:0032868 @@ -69320,8 +68953,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to insulin stimulus" EXACT [GOC:dos] is_a: GO:0043434 ! response to peptide hormone intersection_of: GO:0042221 ! response to chemical -intersection_of: has_primary_input PR:000009054 ! insulin gene translation product -relationship: has_primary_input PR:000009054 ! insulin gene translation product +intersection_of: RO:0004009 PR:000009054 ! has primary input insulin gene translation product +relationship: RO:0004009 PR:000009054 ! has primary input insulin gene translation product [Term] id: GO:0032869 @@ -69331,8 +68964,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:0032868 ! response to insulin is_a: GO:0071375 ! cellular response to peptide hormone stimulus intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input PR:000009054 ! insulin gene translation product -relationship: has_primary_input PR:000009054 ! insulin gene translation product +intersection_of: RO:0004009 PR:000009054 ! has primary input insulin gene translation product +relationship: RO:0004009 PR:000009054 ! has primary input insulin gene translation product [Term] id: GO:0032870 @@ -69348,8 +68981,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of karyogamy, the creation of a single nucleus from multiple nuclei as a result of membrane fusion." [GOC:mah] is_a: GO:1903353 ! regulation of nucleus organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0000741 ! karyogamy -relationship: regulates GO:0000741 ! karyogamy +intersection_of: RO:0002211 GO:0000741 ! regulates (processual) karyogamy +relationship: RO:0002211 GO:0000741 ! regulates (processual) karyogamy [Term] id: GO:0032878 @@ -69358,8 +68991,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the specification, formation or maintenance of anisotropic intracellular organization or cell growth patterns." [GOC:mah] is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007163 ! establishment or maintenance of cell polarity -relationship: regulates GO:0007163 ! establishment or maintenance of cell polarity +intersection_of: RO:0002211 GO:0007163 ! regulates (processual) establishment or maintenance of cell polarity +relationship: RO:0002211 GO:0007163 ! regulates (processual) establishment or maintenance of cell polarity [Term] id: GO:0032879 @@ -69370,8 +69003,8 @@ subset: gocheck_do_not_annotate synonym: "regulation of localisation" EXACT [GOC:mah] is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051179 ! localization -relationship: regulates GO:0051179 ! localization +intersection_of: RO:0002211 GO:0051179 ! regulates (processual) localization +relationship: RO:0002211 GO:0051179 ! regulates (processual) localization property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI [Term] @@ -69386,8 +69019,8 @@ synonym: "regulation of cellular protein localization" EXACT [] synonym: "regulation of protein localisation" EXACT [GOC:mah] is_a: GO:0060341 ! regulation of cellular localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008104 ! protein localization -relationship: regulates GO:0008104 ! protein localization +intersection_of: RO:0002211 GO:0008104 ! regulates (processual) protein localization +relationship: RO:0002211 GO:0008104 ! regulates (processual) protein localization property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22021" xsd:anyURI created_by: jl creation_date: 2015-01-20T14:32:14Z @@ -69400,8 +69033,8 @@ def: "Any process that modulates the frequency, rate or extent of the chemical r is_a: GO:0006109 ! regulation of carbohydrate metabolic process is_a: GO:0060255 ! regulation of macromolecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0005976 ! polysaccharide metabolic process -relationship: regulates GO:0005976 ! polysaccharide metabolic process +intersection_of: RO:0002211 GO:0005976 ! regulates (processual) polysaccharide metabolic process +relationship: RO:0002211 GO:0005976 ! regulates (processual) polysaccharide metabolic process [Term] id: GO:0032882 @@ -69411,8 +69044,8 @@ def: "Any process that modulates the frequency, rate or extent of the chemical r synonym: "regulation of chitin metabolism" EXACT [] is_a: GO:0032881 ! regulation of polysaccharide metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006030 ! chitin metabolic process -relationship: regulates GO:0006030 ! chitin metabolic process +intersection_of: RO:0002211 GO:0006030 ! regulates (processual) chitin metabolic process +relationship: RO:0002211 GO:0006030 ! regulates (processual) chitin metabolic process [Term] id: GO:0032883 @@ -69426,8 +69059,8 @@ synonym: "regulation of chitin synthesis" EXACT [] is_a: GO:0032882 ! regulation of chitin metabolic process is_a: GO:0032885 ! regulation of polysaccharide biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006031 ! chitin biosynthetic process -relationship: regulates GO:0006031 ! chitin biosynthetic process +intersection_of: RO:0002211 GO:0006031 ! regulates (processual) chitin biosynthetic process +relationship: RO:0002211 GO:0006031 ! regulates (processual) chitin biosynthetic process [Term] id: GO:0032885 @@ -69438,8 +69071,8 @@ is_a: GO:0010556 ! regulation of macromolecule biosynthetic process is_a: GO:0032881 ! regulation of polysaccharide metabolic process is_a: GO:0043255 ! regulation of carbohydrate biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0000271 ! polysaccharide biosynthetic process -relationship: regulates GO:0000271 ! polysaccharide biosynthetic process +intersection_of: RO:0002211 GO:0000271 ! regulates (processual) polysaccharide biosynthetic process +relationship: RO:0002211 GO:0000271 ! regulates (processual) polysaccharide biosynthetic process [Term] id: GO:0032886 @@ -69448,8 +69081,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the microtubule cytoskeleton." [GOC:mah] is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007017 ! microtubule-based process -relationship: regulates GO:0007017 ! microtubule-based process +intersection_of: RO:0002211 GO:0007017 ! regulates (processual) microtubule-based process +relationship: RO:0002211 GO:0007017 ! regulates (processual) microtubule-based process [Term] id: GO:0032890 @@ -69458,8 +69091,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the directed movement of organic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah] is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0015849 ! organic acid transport -relationship: regulates GO:0015849 ! organic acid transport +intersection_of: RO:0002211 GO:0015849 ! regulates (processual) organic acid transport +relationship: RO:0002211 GO:0015849 ! regulates (processual) organic acid transport [Term] id: GO:0032891 @@ -69473,8 +69106,8 @@ synonym: "inhibition of organic acid transport" NARROW [] is_a: GO:0032890 ! regulation of organic acid transport is_a: GO:0051051 ! negative regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0015849 ! organic acid transport -relationship: negatively_regulates GO:0015849 ! organic acid transport +intersection_of: RO:0002212 GO:0015849 ! negatively regulates organic acid transport +relationship: RO:0002212 GO:0015849 ! negatively regulates organic acid transport [Term] id: GO:0032892 @@ -69489,8 +69122,8 @@ synonym: "upregulation of organic acid transport" EXACT [] is_a: GO:0032890 ! regulation of organic acid transport is_a: GO:0051050 ! positive regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0015849 ! organic acid transport -relationship: positively_regulates GO:0015849 ! organic acid transport +intersection_of: RO:0002213 GO:0015849 ! positively regulates organic acid transport +relationship: RO:0002213 GO:0015849 ! positively regulates organic acid transport [Term] id: GO:0032940 @@ -69521,8 +69154,8 @@ synonym: "PBMC proliferation" NARROW [] synonym: "peripheral blood mononuclear cell proliferation" NARROW [] is_a: GO:0070661 ! leukocyte proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000842 ! mononuclear cell -relationship: acts_on_population_of CL:0000842 ! mononuclear cell +intersection_of: RO:0012003 CL:0000842 ! acts on population of mononuclear cell +relationship: RO:0012003 CL:0000842 ! acts on population of mononuclear cell [Term] id: GO:0032944 @@ -69533,8 +69166,8 @@ synonym: "regulation of PBMC proliferation" NARROW [] synonym: "regulation of peripheral blood mononuclear cell proliferation" NARROW [] is_a: GO:0070663 ! regulation of leukocyte proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032943 ! mononuclear cell proliferation -relationship: regulates GO:0032943 ! mononuclear cell proliferation +intersection_of: RO:0002211 GO:0032943 ! regulates (processual) mononuclear cell proliferation +relationship: RO:0002211 GO:0032943 ! regulates (processual) mononuclear cell proliferation [Term] id: GO:0032945 @@ -69546,8 +69179,8 @@ synonym: "negative regulation of peripheral blood mononuclear cell proliferation is_a: GO:0032944 ! regulation of mononuclear cell proliferation is_a: GO:0070664 ! negative regulation of leukocyte proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032943 ! mononuclear cell proliferation -relationship: negatively_regulates GO:0032943 ! mononuclear cell proliferation +intersection_of: RO:0002212 GO:0032943 ! negatively regulates mononuclear cell proliferation +relationship: RO:0002212 GO:0032943 ! negatively regulates mononuclear cell proliferation [Term] id: GO:0032946 @@ -69564,8 +69197,8 @@ synonym: "upregulation of mononuclear cell proliferation" EXACT [] is_a: GO:0032944 ! regulation of mononuclear cell proliferation is_a: GO:0070665 ! positive regulation of leukocyte proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032943 ! mononuclear cell proliferation -relationship: positively_regulates GO:0032943 ! mononuclear cell proliferation +intersection_of: RO:0002213 GO:0032943 ! positively regulates mononuclear cell proliferation +relationship: RO:0002213 GO:0032943 ! positively regulates mononuclear cell proliferation [Term] id: GO:0032950 @@ -69575,8 +69208,8 @@ def: "Any process that modulates the frequency, rate or extent of the chemical r synonym: "regulation of beta-glucan metabolism" EXACT [] is_a: GO:0032881 ! regulation of polysaccharide metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051273 ! beta-glucan metabolic process -relationship: regulates GO:0051273 ! beta-glucan metabolic process +intersection_of: RO:0002211 GO:0051273 ! regulates (processual) beta-glucan metabolic process +relationship: RO:0002211 GO:0051273 ! regulates (processual) beta-glucan metabolic process [Term] id: GO:0032951 @@ -69590,8 +69223,8 @@ synonym: "regulation of beta-glucan synthesis" EXACT [] is_a: GO:0010962 ! regulation of glucan biosynthetic process is_a: GO:0032950 ! regulation of beta-glucan metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051274 ! beta-glucan biosynthetic process -relationship: regulates GO:0051274 ! beta-glucan biosynthetic process +intersection_of: RO:0002211 GO:0051274 ! regulates (processual) beta-glucan biosynthetic process +relationship: RO:0002211 GO:0051274 ! regulates (processual) beta-glucan biosynthetic process [Term] id: GO:0032956 @@ -69603,8 +69236,8 @@ synonym: "regulation of actin cytoskeleton organization and biogenesis" RELATED is_a: GO:0032970 ! regulation of actin filament-based process is_a: GO:0051493 ! regulation of cytoskeleton organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030036 ! actin cytoskeleton organization -relationship: regulates GO:0030036 ! actin cytoskeleton organization +intersection_of: RO:0002211 GO:0030036 ! regulates (processual) actin cytoskeleton organization +relationship: RO:0002211 GO:0030036 ! regulates (processual) actin cytoskeleton organization [Term] id: GO:0032963 @@ -69614,8 +69247,8 @@ def: "The chemical reactions and pathways involving collagen, any of a group of synonym: "collagen metabolism" EXACT [] is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output GO:0005581 ! collagen trimer -relationship: has_primary_input_or_output GO:0005581 ! collagen trimer +intersection_of: RO:0004007 GO:0005581 ! has primary input or output collagen trimer +relationship: RO:0004007 GO:0005581 ! has primary input or output collagen trimer [Term] id: GO:0032964 @@ -69629,8 +69262,8 @@ synonym: "collagen synthesis" EXACT [] is_a: GO:0009058 ! biosynthetic process is_a: GO:0032963 ! collagen metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output GO:0005581 ! collagen trimer -relationship: has_primary_output GO:0005581 ! collagen trimer +intersection_of: RO:0004008 GO:0005581 ! has primary output collagen trimer +relationship: RO:0004008 GO:0005581 ! has primary output collagen trimer [Term] id: GO:0032965 @@ -69644,8 +69277,8 @@ synonym: "regulation of collagen synthesis" EXACT [] is_a: GO:0009889 ! regulation of biosynthetic process is_a: GO:0010712 ! regulation of collagen metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032964 ! collagen biosynthetic process -relationship: regulates GO:0032964 ! collagen biosynthetic process +intersection_of: RO:0002211 GO:0032964 ! regulates (processual) collagen biosynthetic process +relationship: RO:0002211 GO:0032964 ! regulates (processual) collagen biosynthetic process [Term] id: GO:0032966 @@ -69660,8 +69293,8 @@ is_a: GO:0009890 ! negative regulation of biosynthetic process is_a: GO:0010713 ! negative regulation of collagen metabolic process is_a: GO:0032965 ! regulation of collagen biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032964 ! collagen biosynthetic process -relationship: negatively_regulates GO:0032964 ! collagen biosynthetic process +intersection_of: RO:0002212 GO:0032964 ! negatively regulates collagen biosynthetic process +relationship: RO:0002212 GO:0032964 ! negatively regulates collagen biosynthetic process [Term] id: GO:0032967 @@ -69676,8 +69309,8 @@ is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:0010714 ! positive regulation of collagen metabolic process is_a: GO:0032965 ! regulation of collagen biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032964 ! collagen biosynthetic process -relationship: positively_regulates GO:0032964 ! collagen biosynthetic process +intersection_of: RO:0002213 GO:0032964 ! positively regulates collagen biosynthetic process +relationship: RO:0002213 GO:0032964 ! positively regulates collagen biosynthetic process [Term] id: GO:0032970 @@ -69686,8 +69319,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the actin cytoskeleton." [GOC:mah] is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030029 ! actin filament-based process -relationship: regulates GO:0030029 ! actin filament-based process +intersection_of: RO:0002211 GO:0030029 ! regulates (processual) actin filament-based process +relationship: RO:0002211 GO:0030029 ! regulates (processual) actin filament-based process [Term] id: GO:0032973 @@ -69701,14 +69334,14 @@ synonym: "amino acid transmembrane export" BROAD [] is_a: GO:0003333 ! amino acid transmembrane transport is_a: GO:0140115 ! export across plasma membrane intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion -intersection_of: has_target_end_location GO:0005576 ! extracellular region -intersection_of: has_target_start_location GO:0005829 ! cytosol -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:35238 ! amino acid zwitterion -relationship: has_target_end_location GO:0005576 ! extracellular region -relationship: has_target_start_location GO:0005829 ! cytosol -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005829 ! has target start location cytosol +intersection_of: RO:0002339 GO:0005576 ! has target end location extracellular region +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion +relationship: RO:0002338 GO:0005829 ! has target start location cytosol +relationship: RO:0002339 GO:0005576 ! has target end location extracellular region +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion created_by: jl creation_date: 2012-11-14T14:27:40Z @@ -69722,14 +69355,14 @@ synonym: "vacuolar amino acid export" EXACT [] is_a: GO:0003333 ! amino acid transmembrane transport is_a: GO:0034486 ! vacuolar transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005775 ! vacuolar lumen -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:35238 ! amino acid zwitterion -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005775 ! vacuolar lumen -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002338 GO:0005775 ! has target start location vacuolar lumen +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion +relationship: RO:0002338 GO:0005775 ! has target start location vacuolar lumen +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion [Term] id: GO:0032975 @@ -69740,14 +69373,14 @@ synonym: "vacuolar amino acid import" EXACT [] is_a: GO:0003333 ! amino acid transmembrane transport is_a: GO:0034486 ! vacuolar transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion -intersection_of: has_target_end_location GO:0005775 ! vacuolar lumen -intersection_of: has_target_start_location GO:0005829 ! cytosol -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:35238 ! amino acid zwitterion -relationship: has_target_end_location GO:0005775 ! vacuolar lumen -relationship: has_target_start_location GO:0005829 ! cytosol -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002338 GO:0005829 ! has target start location cytosol +intersection_of: RO:0002339 GO:0005775 ! has target end location vacuolar lumen +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion +relationship: RO:0002338 GO:0005829 ! has target start location cytosol +relationship: RO:0002339 GO:0005775 ! has target end location vacuolar lumen +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion [Term] id: GO:0032980 @@ -69756,9 +69389,9 @@ namespace: biological_process def: "A change in the morphology or behavior of a keratinocyte resulting from exposure to an activating factor such as a cellular or soluble ligand. Upon activation, keratinocytes become migratory and hyperproliferative, and produce growth factors and cytokines." [GOC:mah, PMID:15737202] is_a: GO:0001775 ! cell activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000312 ! keratinocyte -relationship: has_primary_input CL:0000312 ! keratinocyte +intersection_of: RO:0004009 CL:0000312 ! has primary input keratinocyte relationship: never_in_taxon NCBITaxon:6656 ! Arthropoda +relationship: RO:0004009 CL:0000312 ! has primary input keratinocyte [Term] id: GO:0032984 @@ -69775,22 +69408,10 @@ synonym: "protein complex disassembly" EXACT [] is_a: GO:0022411 ! cellular component disassembly is_a: GO:0043933 ! protein-containing complex organization intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0032991 ! protein-containing complex -relationship: results_in_disassembly_of GO:0032991 ! protein-containing complex +intersection_of: RO:0002590 GO:0032991 ! results in disassembly of protein-containing complex +relationship: RO:0002590 GO:0032991 ! results in disassembly of protein-containing complex property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22580" xsd:anyURI -[Term] -id: GO:0032986 -name: protein-DNA complex disassembly -namespace: biological_process -def: "The disaggregation of a protein-DNA complex into its constituent components." [GOC:mah] -synonym: "DNA-protein complex disassembly" EXACT [GOC:mah] -is_a: GO:0032984 ! protein-containing complex disassembly -is_a: GO:0071824 ! protein-DNA complex organization -intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0032993 ! protein-DNA complex -relationship: results_in_disassembly_of GO:0032993 ! protein-DNA complex - [Term] id: GO:0032988 name: protein-RNA complex disassembly @@ -69802,8 +69423,8 @@ synonym: "RNP complex disassembly" EXACT [] is_a: GO:0032984 ! protein-containing complex disassembly is_a: GO:0071826 ! protein-RNA complex organization intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:1990904 ! ribonucleoprotein complex -relationship: results_in_disassembly_of GO:1990904 ! ribonucleoprotein complex +intersection_of: RO:0002590 GO:1990904 ! results in disassembly of ribonucleoprotein complex +relationship: RO:0002590 GO:1990904 ! results in disassembly of ribonucleoprotein complex property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/25143" xsd:anyURI [Term] @@ -69837,19 +69458,7 @@ synonym: "protein complex" NARROW [] synonym: "protein containing complex" EXACT [] synonym: "protein-protein complex" NARROW [] is_a: GO:0005575 ! cellular_component -disjoint_from: GO:0110165 ! cellular anatomical entity -relationship: has_part PR:000000001 ! protein - -[Term] -id: GO:0032993 -name: protein-DNA complex -namespace: cellular_component -def: "A macromolecular complex containing both protein and DNA molecules." [GOC:mah] -comment: Note that this term is intended to classify complexes that have DNA as one of the members of the complex, that is, the complex does not exist if DNA is not present. Protein complexes that interact with DNA e.g. transcription factor complexes should not be classified here. -subset: goslim_pir -synonym: "DNA-protein complex" EXACT [GOC:mah] -is_a: GO:0032991 ! protein-containing complex -relationship: has_part CHEBI:16991 ! deoxyribonucleic acid +disjoint_from: GO:0110165 ! cellular anatomical structure relationship: has_part PR:000000001 ! protein [Term] @@ -69882,8 +69491,8 @@ def: "The expansion of a muscle cell population by cell division." [CL:0000187, synonym: "myocyte proliferation" EXACT [] is_a: GO:0008283 ! cell population proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000187 ! muscle cell -relationship: acts_on_population_of CL:0000187 ! muscle cell +intersection_of: RO:0012003 CL:0000187 ! acts on population of muscle cell +relationship: RO:0012003 CL:0000187 ! acts on population of muscle cell [Term] id: GO:0033013 @@ -69893,10 +69502,10 @@ def: "The chemical reactions and pathways involving tetrapyrroles, natural pigme subset: goslim_pombe subset: goslim_prokaryote synonym: "tetrapyrrole metabolism" EXACT [] -is_a: GO:1901564 ! organonitrogen compound metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26932 ! tetrapyrrole -relationship: has_primary_input_or_output CHEBI:26932 ! tetrapyrrole +intersection_of: RO:0004007 CHEBI:26932 ! has primary input or output tetrapyrrole +relationship: RO:0004007 CHEBI:26932 ! has primary input or output tetrapyrrole [Term] id: GO:0033014 @@ -69907,11 +69516,11 @@ synonym: "tetrapyrrole anabolism" EXACT [] synonym: "tetrapyrrole biosynthesis" EXACT [] synonym: "tetrapyrrole formation" EXACT [] synonym: "tetrapyrrole synthesis" EXACT [] +is_a: GO:0009058 ! biosynthetic process is_a: GO:0033013 ! tetrapyrrole metabolic process -is_a: GO:1901566 ! organonitrogen compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26932 ! tetrapyrrole -relationship: has_primary_output CHEBI:26932 ! tetrapyrrole +intersection_of: RO:0004008 CHEBI:26932 ! has primary output tetrapyrrole +relationship: RO:0004008 CHEBI:26932 ! has primary output tetrapyrrole [Term] id: GO:0033015 @@ -69921,11 +69530,11 @@ def: "The chemical reactions and pathways leading to the breakdown of tetrapyrro synonym: "tetrapyrrole breakdown" EXACT [] synonym: "tetrapyrrole catabolism" EXACT [] synonym: "tetrapyrrole degradation" EXACT [] +is_a: GO:0009056 ! catabolic process is_a: GO:0033013 ! tetrapyrrole metabolic process -is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:26932 ! tetrapyrrole -relationship: has_primary_input CHEBI:26932 ! tetrapyrrole +intersection_of: RO:0004009 CHEBI:26932 ! has primary input tetrapyrrole +relationship: RO:0004009 CHEBI:26932 ! has primary input tetrapyrrole [Term] id: GO:0033028 @@ -69936,8 +69545,8 @@ synonym: "apoptosis of myeloid cells" EXACT [] synonym: "myeloid cell apoptosis" NARROW [] is_a: GO:0006915 ! apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000763 ! myeloid cell -relationship: occurs_in CL:0000763 ! myeloid cell +intersection_of: BFO:0000066 CL:0000763 ! occurs in myeloid cell +relationship: BFO:0000066 CL:0000763 ! occurs in myeloid cell [Term] id: GO:0033029 @@ -69949,9 +69558,9 @@ is_a: GO:0002682 ! regulation of immune system process is_a: GO:0033032 ! regulation of myeloid cell apoptotic process is_a: GO:2000106 ! regulation of leukocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001781 ! neutrophil apoptotic process -relationship: regulates GO:0001781 ! neutrophil apoptotic process -relationship: regulates GO:0002376 ! immune system process +intersection_of: RO:0002211 GO:0001781 ! regulates (processual) neutrophil apoptotic process +relationship: RO:0002211 GO:0001781 ! regulates (processual) neutrophil apoptotic process +relationship: RO:0002211 GO:0002376 ! regulates (processual) immune system process [Term] id: GO:0033030 @@ -69967,8 +69576,8 @@ is_a: GO:0033029 ! regulation of neutrophil apoptotic process is_a: GO:0033033 ! negative regulation of myeloid cell apoptotic process is_a: GO:2000107 ! negative regulation of leukocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001781 ! neutrophil apoptotic process -relationship: negatively_regulates GO:0001781 ! neutrophil apoptotic process +intersection_of: RO:0002212 GO:0001781 ! negatively regulates neutrophil apoptotic process +relationship: RO:0002212 GO:0001781 ! negatively regulates neutrophil apoptotic process [Term] id: GO:0033031 @@ -69986,9 +69595,9 @@ is_a: GO:0033029 ! regulation of neutrophil apoptotic process is_a: GO:0033034 ! positive regulation of myeloid cell apoptotic process is_a: GO:2000108 ! positive regulation of leukocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001781 ! neutrophil apoptotic process -relationship: positively_regulates GO:0001781 ! neutrophil apoptotic process -relationship: positively_regulates GO:0002376 ! immune system process +intersection_of: RO:0002213 GO:0001781 ! positively regulates neutrophil apoptotic process +relationship: RO:0002213 GO:0001781 ! positively regulates neutrophil apoptotic process +relationship: RO:0002213 GO:0002376 ! positively regulates immune system process [Term] id: GO:0033032 @@ -69998,8 +69607,8 @@ def: "Any process that modulates the frequency, rate, or extent of myeloid cell synonym: "regulation of myeloid cell apoptosis" NARROW [] is_a: GO:0042981 ! regulation of apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0033028 ! myeloid cell apoptotic process -relationship: regulates GO:0033028 ! myeloid cell apoptotic process +intersection_of: RO:0002211 GO:0033028 ! regulates (processual) myeloid cell apoptotic process +relationship: RO:0002211 GO:0033028 ! regulates (processual) myeloid cell apoptotic process [Term] id: GO:0033033 @@ -70014,8 +69623,8 @@ synonym: "negative regulation of myeloid cell apoptosis" NARROW [] is_a: GO:0033032 ! regulation of myeloid cell apoptotic process is_a: GO:0043066 ! negative regulation of apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0033028 ! myeloid cell apoptotic process -relationship: negatively_regulates GO:0033028 ! myeloid cell apoptotic process +intersection_of: RO:0002212 GO:0033028 ! negatively regulates myeloid cell apoptotic process +relationship: RO:0002212 GO:0033028 ! negatively regulates myeloid cell apoptotic process [Term] id: GO:0033034 @@ -70031,8 +69640,8 @@ synonym: "upregulation of myeloid cell apoptosis" EXACT [] is_a: GO:0033032 ! regulation of myeloid cell apoptotic process is_a: GO:0043065 ! positive regulation of apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0033028 ! myeloid cell apoptotic process -relationship: positively_regulates GO:0033028 ! myeloid cell apoptotic process +intersection_of: RO:0002213 GO:0033028 ! positively regulates myeloid cell apoptotic process +relationship: RO:0002213 GO:0033028 ! positively regulates myeloid cell apoptotic process [Term] id: GO:0033036 @@ -70051,8 +69660,8 @@ def: "Any process in which a polysaccharide is transported to, or maintained in, synonym: "polysaccharide localisation" EXACT [GOC:mah] is_a: GO:0033036 ! macromolecule localization intersection_of: GO:0033036 ! macromolecule localization -intersection_of: has_primary_input CHEBI:18154 ! polysaccharide -relationship: has_primary_input CHEBI:18154 ! polysaccharide +intersection_of: RO:0004009 CHEBI:18154 ! has primary input polysaccharide +relationship: RO:0004009 CHEBI:18154 ! has primary input polysaccharide [Term] id: GO:0033043 @@ -70064,8 +69673,8 @@ synonym: "regulation of organelle organisation" EXACT [GOC:mah] synonym: "regulation of organelle organization and biogenesis" RELATED [GOC:mah] is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006996 ! organelle organization -relationship: regulates GO:0006996 ! organelle organization +intersection_of: RO:0002211 GO:0006996 ! regulates (processual) organelle organization +relationship: RO:0002211 GO:0006996 ! regulates (processual) organelle organization [Term] id: GO:0033044 @@ -70076,8 +69685,8 @@ synonym: "regulation of chromosome organisation" EXACT [GOC:mah] synonym: "regulation of chromosome organization and biogenesis" RELATED [GOC:mah] is_a: GO:0033043 ! regulation of organelle organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051276 ! chromosome organization -relationship: regulates GO:0051276 ! chromosome organization +intersection_of: RO:0002211 GO:0051276 ! regulates (processual) chromosome organization +relationship: RO:0002211 GO:0051276 ! regulates (processual) chromosome organization [Term] id: GO:0033045 @@ -70087,8 +69696,8 @@ def: "Any process that modulates the frequency, rate or extent of sister chromat is_a: GO:0033044 ! regulation of chromosome organization is_a: GO:0051983 ! regulation of chromosome segregation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0000819 ! sister chromatid segregation -relationship: regulates GO:0000819 ! sister chromatid segregation +intersection_of: RO:0002211 GO:0000819 ! regulates (processual) sister chromatid segregation +relationship: RO:0002211 GO:0000819 ! regulates (processual) sister chromatid segregation [Term] id: GO:0033046 @@ -70099,8 +69708,8 @@ is_a: GO:0033045 ! regulation of sister chromatid segregation is_a: GO:0051985 ! negative regulation of chromosome segregation is_a: GO:2001251 ! negative regulation of chromosome organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0000819 ! sister chromatid segregation -relationship: negatively_regulates GO:0000819 ! sister chromatid segregation +intersection_of: RO:0002212 GO:0000819 ! negatively regulates sister chromatid segregation +relationship: RO:0002212 GO:0000819 ! negatively regulates sister chromatid segregation [Term] id: GO:0033047 @@ -70109,8 +69718,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of sister chromatid segregation during mitosis." [GOC:mah] is_a: GO:0033045 ! regulation of sister chromatid segregation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0000070 ! mitotic sister chromatid segregation -relationship: regulates GO:0000070 ! mitotic sister chromatid segregation +intersection_of: RO:0002211 GO:0000070 ! regulates (processual) mitotic sister chromatid segregation +relationship: RO:0002211 GO:0000070 ! regulates (processual) mitotic sister chromatid segregation [Term] id: GO:0033048 @@ -70120,8 +69729,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0033046 ! negative regulation of sister chromatid segregation is_a: GO:0033047 ! regulation of mitotic sister chromatid segregation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0000070 ! mitotic sister chromatid segregation -relationship: negatively_regulates GO:0000070 ! mitotic sister chromatid segregation +intersection_of: RO:0002212 GO:0000070 ! negatively regulates mitotic sister chromatid segregation +relationship: RO:0002212 GO:0000070 ! negatively regulates mitotic sister chromatid segregation [Term] id: GO:0033054 @@ -70131,8 +69740,8 @@ def: "The chemical reactions and pathways involving D-glutamate, the D-enantiome synonym: "D-glutamate metabolism" EXACT [] is_a: GO:0006536 ! glutamate metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:29986 ! D-glutamate(1-) -relationship: has_primary_input_or_output CHEBI:29986 ! D-glutamate(1-) +intersection_of: RO:0004007 CHEBI:29986 ! has primary input or output D-glutamate(1-) +relationship: RO:0004007 CHEBI:29986 ! has primary input or output D-glutamate(1-) [Term] id: GO:0033059 @@ -70154,8 +69763,8 @@ synonym: "thymocyte cell differentiation" EXACT [] synonym: "thymocyte differentiation" EXACT [] is_a: GO:0030217 ! T cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000893 ! thymocyte -relationship: results_in_acquisition_of_features_of CL:0000893 ! thymocyte +intersection_of: RO:0002315 CL:0000893 ! results in acquisition of features of thymocyte +relationship: RO:0002315 CL:0000893 ! results in acquisition of features of thymocyte [Term] id: GO:0033079 @@ -70164,8 +69773,8 @@ namespace: biological_process def: "The expansion of an immature T cell population by cell division." [GOC:add, ISBN:0781735149] is_a: GO:0042098 ! T cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0002420 ! immature T cell -relationship: acts_on_population_of CL:0002420 ! immature T cell +intersection_of: RO:0012003 CL:0002420 ! acts on population of immature T cell +relationship: RO:0012003 CL:0002420 ! acts on population of immature T cell [Term] id: GO:0033080 @@ -70177,9 +69786,9 @@ synonym: "thymocyte cell proliferation" EXACT [] synonym: "thymocyte proliferation" EXACT [] is_a: GO:0033079 ! immature T cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000893 ! thymocyte -relationship: acts_on_population_of CL:0000893 ! thymocyte +intersection_of: RO:0012003 CL:0000893 ! acts on population of thymocyte relationship: part_of GO:0033077 ! T cell differentiation in thymus +relationship: RO:0012003 CL:0000893 ! acts on population of thymocyte [Term] id: GO:0033081 @@ -70193,8 +69802,8 @@ synonym: "regulation of thymocyte cell differentiation" EXACT [] synonym: "regulation of thymocyte differentiation" EXACT [] is_a: GO:0045580 ! regulation of T cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0033077 ! T cell differentiation in thymus -relationship: regulates GO:0033077 ! T cell differentiation in thymus +intersection_of: RO:0002211 GO:0033077 ! regulates (processual) T cell differentiation in thymus +relationship: RO:0002211 GO:0033077 ! regulates (processual) T cell differentiation in thymus [Term] id: GO:0033083 @@ -70203,8 +69812,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of immature T cell proliferation." [GOC:add, GOC:mah] is_a: GO:0042129 ! regulation of T cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0033079 ! immature T cell proliferation -relationship: regulates GO:0033079 ! immature T cell proliferation +intersection_of: RO:0002211 GO:0033079 ! regulates (processual) immature T cell proliferation +relationship: RO:0002211 GO:0033079 ! regulates (processual) immature T cell proliferation [Term] id: GO:0033084 @@ -70217,8 +69826,8 @@ synonym: "regulation of thymocyte cell proliferation" EXACT [] synonym: "regulation of thymocyte proliferation" EXACT [] is_a: GO:0033083 ! regulation of immature T cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0033080 ! immature T cell proliferation in thymus -relationship: regulates GO:0033080 ! immature T cell proliferation in thymus +intersection_of: RO:0002211 GO:0033080 ! regulates (processual) immature T cell proliferation in thymus +relationship: RO:0002211 GO:0033080 ! regulates (processual) immature T cell proliferation in thymus [Term] id: GO:0033085 @@ -70233,8 +69842,8 @@ synonym: "negative regulation of thymocyte differentiation" EXACT [] is_a: GO:0033081 ! regulation of T cell differentiation in thymus is_a: GO:0045581 ! negative regulation of T cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0033077 ! T cell differentiation in thymus -relationship: negatively_regulates GO:0033077 ! T cell differentiation in thymus +intersection_of: RO:0002212 GO:0033077 ! negatively regulates T cell differentiation in thymus +relationship: RO:0002212 GO:0033077 ! negatively regulates T cell differentiation in thymus [Term] id: GO:0033087 @@ -70244,8 +69853,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0033083 ! regulation of immature T cell proliferation is_a: GO:0042130 ! negative regulation of T cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0033079 ! immature T cell proliferation -relationship: negatively_regulates GO:0033079 ! immature T cell proliferation +intersection_of: RO:0002212 GO:0033079 ! negatively regulates immature T cell proliferation +relationship: RO:0002212 GO:0033079 ! negatively regulates immature T cell proliferation [Term] id: GO:0033088 @@ -70259,9 +69868,9 @@ is_a: GO:0033084 ! regulation of immature T cell proliferation in thymus is_a: GO:0033085 ! negative regulation of T cell differentiation in thymus is_a: GO:0033087 ! negative regulation of immature T cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0033080 ! immature T cell proliferation in thymus -relationship: negatively_regulates GO:0033077 ! T cell differentiation in thymus -relationship: negatively_regulates GO:0033080 ! immature T cell proliferation in thymus +intersection_of: RO:0002212 GO:0033080 ! negatively regulates immature T cell proliferation in thymus +relationship: RO:0002212 GO:0033077 ! negatively regulates T cell differentiation in thymus +relationship: RO:0002212 GO:0033080 ! negatively regulates immature T cell proliferation in thymus [Term] id: GO:0033089 @@ -70276,8 +69885,8 @@ synonym: "positive regulation of thymocyte differentiation" EXACT [] is_a: GO:0033081 ! regulation of T cell differentiation in thymus is_a: GO:0045582 ! positive regulation of T cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0033077 ! T cell differentiation in thymus -relationship: positively_regulates GO:0033077 ! T cell differentiation in thymus +intersection_of: RO:0002213 GO:0033077 ! positively regulates T cell differentiation in thymus +relationship: RO:0002213 GO:0033077 ! positively regulates T cell differentiation in thymus [Term] id: GO:0033091 @@ -70287,8 +69896,8 @@ def: "Any process that activates or increases the frequency, rate or extent of i is_a: GO:0033083 ! regulation of immature T cell proliferation is_a: GO:0042102 ! positive regulation of T cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0033079 ! immature T cell proliferation -relationship: positively_regulates GO:0033079 ! immature T cell proliferation +intersection_of: RO:0002213 GO:0033079 ! positively regulates immature T cell proliferation +relationship: RO:0002213 GO:0033079 ! positively regulates immature T cell proliferation [Term] id: GO:0033092 @@ -70301,8 +69910,8 @@ synonym: "positive regulation of thymocyte proliferation" EXACT [] is_a: GO:0033084 ! regulation of immature T cell proliferation in thymus is_a: GO:0033091 ! positive regulation of immature T cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0033080 ! immature T cell proliferation in thymus -relationship: positively_regulates GO:0033080 ! immature T cell proliferation in thymus +intersection_of: RO:0002213 GO:0033080 ! positively regulates immature T cell proliferation in thymus +relationship: RO:0002213 GO:0033080 ! positively regulates immature T cell proliferation in thymus [Term] id: GO:0033121 @@ -70315,8 +69924,8 @@ synonym: "regulation of purine nucleotide degradation" EXACT [] is_a: GO:0030811 ! regulation of nucleotide catabolic process is_a: GO:1900542 ! regulation of purine nucleotide metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006195 ! purine nucleotide catabolic process -relationship: regulates GO:0006195 ! purine nucleotide catabolic process +intersection_of: RO:0002211 GO:0006195 ! regulates (processual) purine nucleotide catabolic process +relationship: RO:0002211 GO:0006195 ! regulates (processual) purine nucleotide catabolic process [Term] id: GO:0033122 @@ -70330,8 +69939,8 @@ is_a: GO:0030812 ! negative regulation of nucleotide catabolic process is_a: GO:0033121 ! regulation of purine nucleotide catabolic process is_a: GO:1900543 ! negative regulation of purine nucleotide metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006195 ! purine nucleotide catabolic process -relationship: negatively_regulates GO:0006195 ! purine nucleotide catabolic process +intersection_of: RO:0002212 GO:0006195 ! negatively regulates purine nucleotide catabolic process +relationship: RO:0002212 GO:0006195 ! negatively regulates purine nucleotide catabolic process [Term] id: GO:0033123 @@ -70345,46 +69954,8 @@ is_a: GO:0030813 ! positive regulation of nucleotide catabolic process is_a: GO:0033121 ! regulation of purine nucleotide catabolic process is_a: GO:1900544 ! positive regulation of purine nucleotide metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006195 ! purine nucleotide catabolic process -relationship: positively_regulates GO:0006195 ! purine nucleotide catabolic process - -[Term] -id: GO:0033143 -name: regulation of intracellular steroid hormone receptor signaling pathway -namespace: biological_process -def: "Any process that modulates the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway." [GOC:mah] -synonym: "regulation of steroid hormone receptor signaling pathway" BROAD [GOC:bf] -synonym: "regulation of steroid hormone receptor signalling pathway" BROAD [] -is_a: GO:1902531 ! regulation of intracellular signal transduction -intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030518 ! nuclear receptor-mediated steroid hormone signaling pathway -relationship: regulates GO:0030518 ! nuclear receptor-mediated steroid hormone signaling pathway - -[Term] -id: GO:0033144 -name: negative regulation of intracellular steroid hormone receptor signaling pathway -namespace: biological_process -def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway." [GOC:mah] -synonym: "negative regulation of steroid hormone receptor signaling pathway" BROAD [GOC:bf] -synonym: "negative regulation of steroid hormone receptor signalling pathway" BROAD [GOC:bf] -is_a: GO:0033143 ! regulation of intracellular steroid hormone receptor signaling pathway -is_a: GO:1902532 ! negative regulation of intracellular signal transduction -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030518 ! nuclear receptor-mediated steroid hormone signaling pathway -relationship: negatively_regulates GO:0030518 ! nuclear receptor-mediated steroid hormone signaling pathway - -[Term] -id: GO:0033145 -name: positive regulation of intracellular steroid hormone receptor signaling pathway -namespace: biological_process -def: "Any process that activates or increases the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway." [GOC:mah] -synonym: "positive regulation of steroid hormone receptor signaling pathway" BROAD [GOC:bf] -synonym: "positive regulation of steroid hormone receptor signalling pathway" BROAD [] -is_a: GO:0033143 ! regulation of intracellular steroid hormone receptor signaling pathway -is_a: GO:1902533 ! positive regulation of intracellular signal transduction -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030518 ! nuclear receptor-mediated steroid hormone signaling pathway -relationship: positively_regulates GO:0030518 ! nuclear receptor-mediated steroid hormone signaling pathway +intersection_of: RO:0002213 GO:0006195 ! positively regulates purine nucleotide catabolic process +relationship: RO:0002213 GO:0006195 ! positively regulates purine nucleotide catabolic process [Term] id: GO:0033151 @@ -70420,9 +69991,9 @@ def: "Any process that modulates the frequency, rate or extent of the directed m is_a: GO:0032386 ! regulation of intracellular transport is_a: GO:0051223 ! regulation of protein transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006886 ! intracellular protein transport -relationship: regulates GO:0006886 ! intracellular protein transport -relationship: regulates GO:0008104 ! protein localization +intersection_of: RO:0002211 GO:0006886 ! regulates (processual) intracellular protein transport +relationship: RO:0002211 GO:0006886 ! regulates (processual) intracellular protein transport +relationship: RO:0002211 GO:0008104 ! regulates (processual) protein localization [Term] id: GO:0033162 @@ -70446,8 +70017,8 @@ synonym: "response to adenosine 5'-triphosphate" EXACT [] synonym: "response to adenosine triphosphate" EXACT [] is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:30616 ! ATP(4-) -relationship: has_primary_input CHEBI:30616 ! ATP(4-) +intersection_of: RO:0004009 CHEBI:30616 ! has primary input ATP(4-) +relationship: RO:0004009 CHEBI:30616 ! has primary input ATP(4-) [Term] id: GO:0033212 @@ -70463,12 +70034,12 @@ is_a: GO:0006826 ! iron ion transport is_a: GO:0006879 ! intracellular iron ion homeostasis is_a: GO:0051649 ! establishment of localization in cell intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:24875 ! iron cation -intersection_of: has_target_end_location GO:0005622 ! intracellular anatomical structure -intersection_of: has_target_start_location GO:0005576 ! extracellular region -relationship: has_primary_input CHEBI:24875 ! iron cation -relationship: has_target_end_location GO:0005622 ! intracellular anatomical structure -relationship: has_target_start_location GO:0005576 ! extracellular region +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005622 ! has target end location intracellular anatomical structure +intersection_of: RO:0004009 CHEBI:24875 ! has primary input iron cation +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005622 ! has target end location intracellular anatomical structure +relationship: RO:0004009 CHEBI:24875 ! has primary input iron cation created_by: mah creation_date: 2009-05-01T04:19:14Z @@ -70480,8 +70051,8 @@ def: "Binding to an amide, any derivative of an oxoacid in which an acidic hydro subset: goslim_pir is_a: GO:0005488 ! binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:32988 ! amide -relationship: has_primary_input CHEBI:32988 ! amide +intersection_of: RO:0004009 CHEBI:32988 ! has primary input amide +relationship: RO:0004009 CHEBI:32988 ! has primary input amide [Term] id: GO:0033238 @@ -70492,8 +70063,8 @@ synonym: "regulation of amine metabolism" EXACT [] synonym: "regulation of cellular amine metabolic process" EXACT [] is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009308 ! amine metabolic process -relationship: regulates GO:0009308 ! amine metabolic process +intersection_of: RO:0002211 GO:0009308 ! regulates (processual) amine metabolic process +relationship: RO:0002211 GO:0009308 ! regulates (processual) amine metabolic process [Term] id: GO:0033239 @@ -70505,8 +70076,8 @@ synonym: "negative regulation of cellular amine metabolic process" EXACT [] is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0033238 ! regulation of amine metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009308 ! amine metabolic process -relationship: negatively_regulates GO:0009308 ! amine metabolic process +intersection_of: RO:0002212 GO:0009308 ! negatively regulates amine metabolic process +relationship: RO:0002212 GO:0009308 ! negatively regulates amine metabolic process [Term] id: GO:0033240 @@ -70518,8 +70089,8 @@ synonym: "positive regulation of cellular amine metabolic process" EXACT [] is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0033238 ! regulation of amine metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009308 ! amine metabolic process -relationship: positively_regulates GO:0009308 ! amine metabolic process +intersection_of: RO:0002213 GO:0009308 ! positively regulates amine metabolic process +relationship: RO:0002213 GO:0009308 ! positively regulates amine metabolic process [Term] id: GO:0033241 @@ -70533,8 +70104,8 @@ synonym: "regulation of cellular amine catabolic process" EXACT [] is_a: GO:0009894 ! regulation of catabolic process is_a: GO:0033238 ! regulation of amine metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009310 ! amine catabolic process -relationship: regulates GO:0009310 ! amine catabolic process +intersection_of: RO:0002211 GO:0009310 ! regulates (processual) amine catabolic process +relationship: RO:0002211 GO:0009310 ! regulates (processual) amine catabolic process [Term] id: GO:0033242 @@ -70549,8 +70120,8 @@ is_a: GO:0009895 ! negative regulation of catabolic process is_a: GO:0033239 ! negative regulation of amine metabolic process is_a: GO:0033241 ! regulation of amine catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009310 ! amine catabolic process -relationship: negatively_regulates GO:0009310 ! amine catabolic process +intersection_of: RO:0002212 GO:0009310 ! negatively regulates amine catabolic process +relationship: RO:0002212 GO:0009310 ! negatively regulates amine catabolic process [Term] id: GO:0033243 @@ -70564,8 +70135,8 @@ is_a: GO:0009896 ! positive regulation of catabolic process is_a: GO:0033240 ! positive regulation of amine metabolic process is_a: GO:0033241 ! regulation of amine catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009310 ! amine catabolic process -relationship: positively_regulates GO:0009310 ! amine catabolic process +intersection_of: RO:0002213 GO:0009310 ! positively regulates amine catabolic process +relationship: RO:0002213 GO:0009310 ! positively regulates amine catabolic process [Term] id: GO:0033265 @@ -70574,8 +70145,8 @@ namespace: molecular_function def: "Binding to choline, the amine 2-hydroxy-N,N,N-trimethylethanaminium." [GOC:mlg] is_a: GO:0043169 ! cation binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:15354 ! choline -relationship: has_primary_input CHEBI:15354 ! choline +intersection_of: RO:0004009 CHEBI:15354 ! has primary input choline +relationship: RO:0004009 CHEBI:15354 ! has primary input choline [Term] id: GO:0033268 @@ -70585,7 +70156,7 @@ def: "An axon part that is a gap in the myelin where voltage-gated sodium channe synonym: "node of Ranvier axon" RELATED [NIF_Subcellular:sao188049490] xref: NIF_Subcellular:birnlex_1152_2 xref: Wikipedia:Nodes_of_Ranvier -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of GO:0030424 ! axon relationship: part_of GO:0044304 ! main axon @@ -70598,8 +70169,8 @@ synonym: "cell proliferation in mesencephalon" EXACT [] synonym: "mesencepahalic cell proliferation" RELATED [] is_a: GO:0061351 ! neural precursor cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: occurs_in UBERON:0001891 ! midbrain -relationship: occurs_in UBERON:0001891 ! midbrain +intersection_of: BFO:0000066 UBERON:0001891 ! occurs in midbrain +relationship: BFO:0000066 UBERON:0001891 ! occurs in midbrain relationship: part_of GO:0030901 ! midbrain development [Term] @@ -70609,8 +70180,17 @@ namespace: molecular_function def: "Binding to a monocarboxylic acid, any organic acid containing one carboxyl (COOH) group or anion (COO-)." [GOC:mah] is_a: GO:0031406 ! carboxylic acid binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:35757 ! monocarboxylic acid anion -relationship: has_primary_input CHEBI:35757 ! monocarboxylic acid anion +intersection_of: RO:0004009 CHEBI:35757 ! has primary input monocarboxylic acid anion +relationship: RO:0004009 CHEBI:35757 ! has primary input monocarboxylic acid anion + +[Term] +id: GO:0033326 +name: cerebrospinal fluid secretion +namespace: biological_process +def: "The regulated release of cerebrospinal fluid (CSF) from the choroid plexus of the lateral, third and fourth ventricles. The cerebrospinal fluid is a clear liquid that located within the ventricles, spinal canal, and subarachnoid spaces." [GOC:ln, PMID:10716451] +synonym: "CSF secretion" EXACT [] +is_a: GO:0007589 ! body fluid secretion +is_a: GO:0032941 ! secretion by tissue [Term] id: GO:0033327 @@ -70620,9 +70200,9 @@ def: "The process in which a relatively unspecialized cell acquires specialized is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000178 ! Leydig cell +intersection_of: RO:0002315 CL:0000178 ! results in acquisition of features of Leydig cell relationship: part_of GO:0008584 ! male gonad development -relationship: results_in_acquisition_of_features_of CL:0000178 ! Leydig cell +relationship: RO:0002315 CL:0000178 ! results in acquisition of features of Leydig cell [Term] id: GO:0033333 @@ -70631,8 +70211,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a fin over time, from its formation to the mature structure." [GOC:dgh] is_a: GO:0048736 ! appendage development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0008897 ! fin -relationship: results_in_development_of UBERON:0008897 ! fin +intersection_of: RO:0002296 UBERON:0008897 ! results in development of fin +relationship: RO:0002296 UBERON:0008897 ! results in development of fin [Term] id: GO:0033334 @@ -70641,9 +70221,9 @@ namespace: biological_process def: "The process in which the anatomical structures of a fin are generated and organized." [GOC:dgh] is_a: GO:0035107 ! appendage morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0008897 ! fin +intersection_of: RO:0002298 UBERON:0008897 ! results in morphogenesis of fin relationship: part_of GO:0033333 ! fin development -relationship: results_in_morphogenesis_of UBERON:0008897 ! fin +relationship: RO:0002298 UBERON:0008897 ! results in morphogenesis of fin [Term] id: GO:0033335 @@ -70652,8 +70232,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the anal fin over time, from its formation to the mature structure." [GOC:dgh] is_a: GO:0033338 ! medial fin development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:4000163 ! anal fin -relationship: results_in_development_of UBERON:4000163 ! anal fin +intersection_of: RO:0002296 UBERON:4000163 ! results in development of anal fin +relationship: RO:0002296 UBERON:4000163 ! results in development of anal fin [Term] id: GO:0033336 @@ -70662,8 +70242,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the caudal fin over time, from its formation to the mature structure." [GOC:dgh] is_a: GO:0033338 ! medial fin development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:4000164 ! caudal fin -relationship: results_in_development_of UBERON:4000164 ! caudal fin +intersection_of: RO:0002296 UBERON:4000164 ! results in development of caudal fin +relationship: RO:0002296 UBERON:4000164 ! results in development of caudal fin [Term] id: GO:0033337 @@ -70672,8 +70252,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the dorsal fin over time, from its formation to the mature structure." [GOC:dgh] is_a: GO:0033338 ! medial fin development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003097 ! dorsal fin -relationship: results_in_development_of UBERON:0003097 ! dorsal fin +intersection_of: RO:0002296 UBERON:0003097 ! results in development of dorsal fin +relationship: RO:0002296 UBERON:0003097 ! results in development of dorsal fin [Term] id: GO:0033338 @@ -70683,8 +70263,8 @@ def: "The process whose specific outcome is the progression of a medial fin over synonym: "median fin development" EXACT [] is_a: GO:0033333 ! fin development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:4000162 ! median fin -relationship: results_in_development_of UBERON:4000162 ! median fin +intersection_of: RO:0002296 UBERON:4000162 ! results in development of median fin +relationship: RO:0002296 UBERON:4000162 ! results in development of median fin [Term] id: GO:0033339 @@ -70694,8 +70274,8 @@ def: "The process whose specific outcome is the progression of the pectoral fin is_a: GO:0033333 ! fin development is_a: GO:0060173 ! limb development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000151 ! pectoral fin -relationship: results_in_development_of UBERON:0000151 ! pectoral fin +intersection_of: RO:0002296 UBERON:0000151 ! results in development of pectoral fin +relationship: RO:0002296 UBERON:0000151 ! results in development of pectoral fin [Term] id: GO:0033340 @@ -70705,8 +70285,8 @@ def: "The process whose specific outcome is the progression of the pelvic fin ov is_a: GO:0033333 ! fin development is_a: GO:0060173 ! limb development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000152 ! pelvic fin -relationship: results_in_development_of UBERON:0000152 ! pelvic fin +intersection_of: RO:0002296 UBERON:0000152 ! results in development of pelvic fin +relationship: RO:0002296 UBERON:0000152 ! results in development of pelvic fin [Term] id: GO:0033341 @@ -70716,8 +70296,8 @@ def: "Any process that modulates the frequency, rate or extent of collagen bindi subset: gocheck_do_not_annotate is_a: GO:0051098 ! regulation of binding intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0005518 ! collagen binding -relationship: regulates GO:0005518 ! collagen binding +intersection_of: RO:0002211 GO:0005518 ! regulates (processual) collagen binding +relationship: RO:0002211 GO:0005518 ! regulates (processual) collagen binding [Term] id: GO:0033342 @@ -70732,8 +70312,8 @@ synonym: "inhibition of collagen binding" NARROW [] is_a: GO:0033341 ! regulation of collagen binding is_a: GO:0051100 ! negative regulation of binding intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0005518 ! collagen binding -relationship: negatively_regulates GO:0005518 ! collagen binding +intersection_of: RO:0002212 GO:0005518 ! negatively regulates collagen binding +relationship: RO:0002212 GO:0005518 ! negatively regulates collagen binding [Term] id: GO:0033343 @@ -70749,8 +70329,8 @@ synonym: "upregulation of collagen binding" EXACT [] is_a: GO:0033341 ! regulation of collagen binding is_a: GO:0051099 ! positive regulation of binding intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0005518 ! collagen binding -relationship: positively_regulates GO:0005518 ! collagen binding +intersection_of: RO:0002213 GO:0005518 ! positively regulates collagen binding +relationship: RO:0002213 GO:0005518 ! positively regulates collagen binding [Term] id: GO:0033363 @@ -70761,9 +70341,9 @@ synonym: "secretory granule organisation" EXACT [GOC:mah] synonym: "secretory granule organization and biogenesis" RELATED [GOC:mah] is_a: GO:0016050 ! vesicle organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0030141 ! secretory granule +intersection_of: RO:0002592 GO:0030141 ! results in organization of secretory granule relationship: part_of GO:0010256 ! endomembrane system organization -relationship: results_in_organization_of GO:0030141 ! secretory granule +relationship: RO:0002592 GO:0030141 ! results in organization of secretory granule [Term] id: GO:0033365 @@ -70774,8 +70354,8 @@ synonym: "protein localisation to organelle" EXACT [GOC:mah] synonym: "protein localization in organelle" EXACT [GOC:mah] is_a: GO:0008104 ! protein localization intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0043226 ! organelle -relationship: has_target_end_location GO:0043226 ! organelle +intersection_of: RO:0002339 GO:0043226 ! has target end location organelle +relationship: RO:0002339 GO:0043226 ! has target end location organelle [Term] id: GO:0033366 @@ -70786,8 +70366,8 @@ synonym: "protein localisation in secretory granule" EXACT [GOC:mah] synonym: "protein localization in secretory granule" EXACT [] is_a: GO:0033365 ! protein localization to organelle intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0030141 ! secretory granule -relationship: has_target_end_location GO:0030141 ! secretory granule +intersection_of: RO:0002339 GO:0030141 ! has target end location secretory granule +relationship: RO:0002339 GO:0030141 ! has target end location secretory granule [Term] id: GO:0033371 @@ -70802,10 +70382,10 @@ synonym: "T-lymphocyte secretory granule maturation" RELATED [] synonym: "T-lymphocyte secretory granule organization" EXACT [] is_a: GO:0033363 ! secretory granule organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: occurs_in CL:0000084 ! T cell -intersection_of: results_in_organization_of GO:0030141 ! secretory granule -relationship: occurs_in CL:0000084 ! T cell -relationship: results_in_organization_of GO:0030141 ! secretory granule +intersection_of: BFO:0000066 CL:0000084 ! occurs in T cell +intersection_of: RO:0002592 GO:0030141 ! results in organization of secretory granule +relationship: BFO:0000066 CL:0000084 ! occurs in T cell +relationship: RO:0002592 GO:0030141 ! results in organization of secretory granule [Term] id: GO:0033500 @@ -70814,8 +70394,8 @@ namespace: biological_process def: "A homeostatic process involved in the maintenance of an internal steady state of a carbohydrate within an organism or cell." [GOC:mah] is_a: GO:0048878 ! chemical homeostasis intersection_of: GO:0048878 ! chemical homeostasis -intersection_of: regulates_levels_of CHEBI:16646 ! carbohydrate -relationship: regulates_levels_of CHEBI:16646 ! carbohydrate +intersection_of: RO:0002332 CHEBI:16646 ! regulates levels of carbohydrate +relationship: RO:0002332 CHEBI:16646 ! regulates levels of carbohydrate [Term] id: GO:0033504 @@ -70824,9 +70404,9 @@ namespace: biological_process def: "The progression of the floor plate over time from its initial formation until its mature state." [GOC:dh] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003306 ! floor plate of neural tube +intersection_of: RO:0002296 UBERON:0003306 ! results in development of floor plate of neural tube relationship: part_of GO:0021915 ! neural tube development -relationship: results_in_development_of UBERON:0003306 ! floor plate of neural tube +relationship: RO:0002296 UBERON:0003306 ! results in development of floor plate of neural tube [Term] id: GO:0033505 @@ -70836,9 +70416,9 @@ def: "The process in which the anatomical structure of the floor plate is genera is_a: GO:0048598 ! embryonic morphogenesis is_a: GO:0048729 ! tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003079 ! floor plate +intersection_of: RO:0002298 UBERON:0003079 ! results in morphogenesis of floor plate relationship: part_of GO:0033504 ! floor plate development -relationship: results_in_morphogenesis_of UBERON:0003079 ! floor plate +relationship: RO:0002298 UBERON:0003079 ! results in morphogenesis of floor plate [Term] id: GO:0033508 @@ -70851,10 +70431,10 @@ xref: MetaCyc:PWY-5087 is_a: GO:0006538 ! glutamate catabolic process is_a: GO:0019605 ! butyrate metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:14321 ! glutamate(1-) -intersection_of: has_primary_output CHEBI:17968 ! butyrate -relationship: has_primary_input CHEBI:14321 ! glutamate(1-) -relationship: has_primary_output CHEBI:17968 ! butyrate +intersection_of: RO:0004008 CHEBI:17968 ! has primary output butyrate +intersection_of: RO:0004009 CHEBI:14321 ! has primary input glutamate(1-) +relationship: RO:0004008 CHEBI:17968 ! has primary output butyrate +relationship: RO:0004009 CHEBI:14321 ! has primary input glutamate(1-) [Term] id: GO:0033509 @@ -70867,10 +70447,10 @@ xref: MetaCyc:PWY-5088 is_a: GO:0006538 ! glutamate catabolic process is_a: GO:0019541 ! propionate metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:14321 ! glutamate(1-) -intersection_of: has_primary_output CHEBI:17272 ! propionate -relationship: has_primary_input CHEBI:14321 ! glutamate(1-) -relationship: has_primary_output CHEBI:17272 ! propionate +intersection_of: RO:0004008 CHEBI:17272 ! has primary output propionate +intersection_of: RO:0004009 CHEBI:14321 ! has primary input glutamate(1-) +relationship: RO:0004008 CHEBI:17272 ! has primary output propionate +relationship: RO:0004009 CHEBI:14321 ! has primary input glutamate(1-) [Term] id: GO:0033526 @@ -70885,10 +70465,10 @@ xref: MetaCyc:PWY-5188 is_a: GO:0006536 ! glutamate metabolic process is_a: GO:0033014 ! tetrapyrrole biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_input CHEBI:14321 ! glutamate(1-) -intersection_of: has_primary_output CHEBI:26932 ! tetrapyrrole -relationship: has_primary_input CHEBI:14321 ! glutamate(1-) -relationship: has_primary_output CHEBI:26932 ! tetrapyrrole +intersection_of: RO:0004008 CHEBI:26932 ! has primary output tetrapyrrole +intersection_of: RO:0004009 CHEBI:14321 ! has primary input glutamate(1-) +relationship: RO:0004008 CHEBI:26932 ! has primary output tetrapyrrole +relationship: RO:0004009 CHEBI:14321 ! has primary input glutamate(1-) [Term] id: GO:0033569 @@ -70897,9 +70477,9 @@ namespace: molecular_function def: "Enables the transfer of lactoferrin from one side of a membrane to the other." [GOC:mlg] is_a: GO:0008320 ! protein transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input PR:000009978 ! lactotransferrin -relationship: has_primary_input PR:000009978 ! lactotransferrin +intersection_of: RO:0004009 PR:000009978 ! has primary input lactotransferrin relationship: part_of GO:0033571 ! lactoferrin transport +relationship: RO:0004009 PR:000009978 ! has primary input lactotransferrin [Term] id: GO:0033571 @@ -70909,8 +70489,8 @@ def: "The directed movement of lactoferrin into, out of or within a cell, or bet is_a: GO:0006826 ! iron ion transport is_a: GO:0015031 ! protein transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input PR:000009978 ! lactotransferrin -relationship: has_primary_input PR:000009978 ! lactotransferrin +intersection_of: RO:0004009 PR:000009978 ! has primary input lactotransferrin +relationship: RO:0004009 PR:000009978 ! has primary input lactotransferrin [Term] id: GO:0033574 @@ -70922,8 +70502,8 @@ is_a: GO:0014070 ! response to organic cyclic compound is_a: GO:0033993 ! response to lipid is_a: GO:1901654 ! response to ketone intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:17347 ! testosterone -relationship: has_primary_input CHEBI:17347 ! testosterone +intersection_of: RO:0004009 CHEBI:17347 ! has primary input testosterone +relationship: RO:0004009 CHEBI:17347 ! has primary input testosterone [Term] id: GO:0033602 @@ -70937,8 +70517,8 @@ synonym: "inhibition of dopamine secretion" NARROW [] is_a: GO:0014059 ! regulation of dopamine secretion is_a: GO:1903531 ! negative regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014046 ! dopamine secretion -relationship: negatively_regulates GO:0014046 ! dopamine secretion +intersection_of: RO:0002212 GO:0014046 ! negatively regulates dopamine secretion +relationship: RO:0002212 GO:0014046 ! negatively regulates dopamine secretion [Term] id: GO:0033603 @@ -70953,8 +70533,8 @@ synonym: "upregulation of dopamine secretion" EXACT [] is_a: GO:0014059 ! regulation of dopamine secretion is_a: GO:1903532 ! positive regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014046 ! dopamine secretion -relationship: positively_regulates GO:0014046 ! dopamine secretion +intersection_of: RO:0002213 GO:0014046 ! positively regulates dopamine secretion +relationship: RO:0002213 GO:0014046 ! positively regulates dopamine secretion [Term] id: GO:0033604 @@ -70969,8 +70549,8 @@ is_a: GO:0050433 ! regulation of catecholamine secretion is_a: GO:0051953 ! negative regulation of amine transport is_a: GO:1903531 ! negative regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0050432 ! catecholamine secretion -relationship: negatively_regulates GO:0050432 ! catecholamine secretion +intersection_of: RO:0002212 GO:0050432 ! negatively regulates catecholamine secretion +relationship: RO:0002212 GO:0050432 ! negatively regulates catecholamine secretion [Term] id: GO:0033605 @@ -70986,15 +70566,15 @@ is_a: GO:0050433 ! regulation of catecholamine secretion is_a: GO:0051954 ! positive regulation of amine transport is_a: GO:1903532 ! positive regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0050432 ! catecholamine secretion -relationship: positively_regulates GO:0050432 ! catecholamine secretion +intersection_of: RO:0002213 GO:0050432 ! positively regulates catecholamine secretion +relationship: RO:0002213 GO:0050432 ! positively regulates catecholamine secretion [Term] id: GO:0033673 name: negative regulation of kinase activity namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [GOC:mah] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "down regulation of kinase activity" EXACT [] synonym: "down-regulation of kinase activity" EXACT [] synonym: "downregulation of kinase activity" EXACT [] @@ -71004,16 +70584,16 @@ is_a: GO:0042326 ! negative regulation of phosphorylation is_a: GO:0043549 ! regulation of kinase activity is_a: GO:0051348 ! negative regulation of transferase activity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0016301 ! kinase activity -relationship: negatively_regulates GO:0016301 ! kinase activity -relationship: negatively_regulates GO:0016310 ! phosphorylation +intersection_of: RO:0002212 GO:0016301 ! negatively regulates kinase activity +relationship: RO:0002212 GO:0016301 ! negatively regulates kinase activity +relationship: RO:0002212 GO:0016310 ! negatively regulates phosphorylation [Term] id: GO:0033674 name: positive regulation of kinase activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [GOC:mah] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "kinase activator" NARROW [] synonym: "stimulation of kinase activity" NARROW [] synonym: "up regulation of kinase activity" EXACT [] @@ -71023,9 +70603,9 @@ is_a: GO:0042327 ! positive regulation of phosphorylation is_a: GO:0043549 ! regulation of kinase activity is_a: GO:0051347 ! positive regulation of transferase activity intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0016301 ! kinase activity -relationship: positively_regulates GO:0016301 ! kinase activity -relationship: positively_regulates GO:0016310 ! phosphorylation +intersection_of: RO:0002213 GO:0016301 ! positively regulates kinase activity +relationship: RO:0002213 GO:0016301 ! positively regulates kinase activity +relationship: RO:0002213 GO:0016310 ! positively regulates phosphorylation [Term] id: GO:0033684 @@ -71034,8 +70614,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the regulated release of luteinizing hormone." [GOC:mah] is_a: GO:0032276 ! regulation of gonadotropin secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032275 ! luteinizing hormone secretion -relationship: regulates GO:0032275 ! luteinizing hormone secretion +intersection_of: RO:0002211 GO:0032275 ! regulates (processual) luteinizing hormone secretion +relationship: RO:0002211 GO:0032275 ! regulates (processual) luteinizing hormone secretion [Term] id: GO:0033685 @@ -71049,8 +70629,8 @@ synonym: "inhibition of luteinizing hormone secretion" NARROW [] is_a: GO:0032277 ! negative regulation of gonadotropin secretion is_a: GO:0033684 ! regulation of luteinizing hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032275 ! luteinizing hormone secretion -relationship: negatively_regulates GO:0032275 ! luteinizing hormone secretion +intersection_of: RO:0002212 GO:0032275 ! negatively regulates luteinizing hormone secretion +relationship: RO:0002212 GO:0032275 ! negatively regulates luteinizing hormone secretion [Term] id: GO:0033686 @@ -71065,8 +70645,8 @@ synonym: "upregulation of luteinizing hormone secretion" EXACT [] is_a: GO:0032278 ! positive regulation of gonadotropin secretion is_a: GO:0033684 ! regulation of luteinizing hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032275 ! luteinizing hormone secretion -relationship: positively_regulates GO:0032275 ! luteinizing hormone secretion +intersection_of: RO:0002213 GO:0032275 ! positively regulates luteinizing hormone secretion +relationship: RO:0002213 GO:0032275 ! positively regulates luteinizing hormone secretion [Term] id: GO:0033687 @@ -71075,8 +70655,8 @@ namespace: biological_process def: "The multiplication or reproduction of osteoblasts, resulting in the expansion of an osteoblast cell population. An osteoblast is a bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone." [GOC:mah] is_a: GO:0008283 ! cell population proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000062 ! osteoblast -relationship: acts_on_population_of CL:0000062 ! osteoblast +intersection_of: RO:0012003 CL:0000062 ! acts on population of osteoblast +relationship: RO:0012003 CL:0000062 ! acts on population of osteoblast [Term] id: GO:0033688 @@ -71085,8 +70665,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of osteoblast proliferation." [GOC:mah] is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0033687 ! osteoblast proliferation -relationship: regulates GO:0033687 ! osteoblast proliferation +intersection_of: RO:0002211 GO:0033687 ! regulates (processual) osteoblast proliferation +relationship: RO:0002211 GO:0033687 ! regulates (processual) osteoblast proliferation [Term] id: GO:0033689 @@ -71100,8 +70680,8 @@ synonym: "inhibition of osteoblast proliferation" NARROW [] is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:0033688 ! regulation of osteoblast proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0033687 ! osteoblast proliferation -relationship: negatively_regulates GO:0033687 ! osteoblast proliferation +intersection_of: RO:0002212 GO:0033687 ! negatively regulates osteoblast proliferation +relationship: RO:0002212 GO:0033687 ! negatively regulates osteoblast proliferation [Term] id: GO:0033690 @@ -71116,8 +70696,8 @@ synonym: "upregulation of osteoblast proliferation" EXACT [] is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:0033688 ! regulation of osteoblast proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0033687 ! osteoblast proliferation -relationship: positively_regulates GO:0033687 ! osteoblast proliferation +intersection_of: RO:0002213 GO:0033687 ! positively regulates osteoblast proliferation +relationship: RO:0002213 GO:0033687 ! positively regulates osteoblast proliferation [Term] id: GO:0033693 @@ -71127,10 +70707,10 @@ def: "The assembly of neurofilaments into bundles, in which the filaments are lo synonym: "NF bundle assembly" EXACT [] is_a: GO:0045110 ! intermediate filament bundle assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_organization_of GO:0005883 ! neurofilament +intersection_of: RO:0002592 GO:0005883 ! results in organization of neurofilament relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa -relationship: results_in_organization_of GO:0005883 ! neurofilament +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0002592 GO:0005883 ! results in organization of neurofilament [Term] id: GO:0033750 @@ -71143,8 +70723,8 @@ synonym: "establishment of ribosome localization" RELATED [] synonym: "ribosome localisation" RELATED [] is_a: GO:0051640 ! organelle localization intersection_of: GO:0051179 ! localization -intersection_of: has_primary_input GO:0005840 ! ribosome -relationship: has_primary_input GO:0005840 ! ribosome +intersection_of: RO:0004009 GO:0005840 ! has primary input ribosome +relationship: RO:0004009 GO:0005840 ! has primary input ribosome [Term] id: GO:0033762 @@ -71154,8 +70734,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to glucagon stimulus" EXACT [GOC:dos] is_a: GO:0043434 ! response to peptide hormone intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:5391 ! glucagon -relationship: has_primary_input CHEBI:5391 ! glucagon +intersection_of: RO:0004009 CHEBI:5391 ! has primary input glucagon +relationship: RO:0004009 CHEBI:5391 ! has primary input glucagon [Term] id: GO:0033993 @@ -71164,8 +70744,8 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus." [GOC:sl] is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:18059 ! lipid -relationship: has_primary_input CHEBI:18059 ! lipid +intersection_of: RO:0004009 CHEBI:18059 ! has primary input lipid +relationship: RO:0004009 CHEBI:18059 ! has primary input lipid [Term] id: GO:0034067 @@ -71184,8 +70764,8 @@ synonym: "protein targeting to Golgi" RELATED [] synonym: "protein-Golgi targeting" RELATED [] is_a: GO:0033365 ! protein localization to organelle intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005794 ! Golgi apparatus -relationship: has_target_end_location GO:0005794 ! Golgi apparatus +intersection_of: RO:0002339 GO:0005794 ! has target end location Golgi apparatus +relationship: RO:0002339 GO:0005794 ! has target end location Golgi apparatus created_by: mah creation_date: 2011-02-14T02:26:36Z @@ -71206,8 +70786,8 @@ synonym: "RBC homeostasis" EXACT [CL:0000232] synonym: "red blood cell homeostasis" EXACT [CL:0000232] is_a: GO:0002262 ! myeloid cell homeostasis intersection_of: GO:0048872 ! homeostasis of number of cells -intersection_of: acts_on_population_of CL:0000232 ! erythrocyte -relationship: acts_on_population_of CL:0000232 ! erythrocyte +intersection_of: RO:0012003 CL:0000232 ! acts on population of erythrocyte +relationship: RO:0012003 CL:0000232 ! acts on population of erythrocyte [Term] id: GO:0034103 @@ -71217,8 +70797,8 @@ def: "Any process that modulates the frequency, rate, or extent of tissue remode synonym: "regulation of tissue remodelling" EXACT [] is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048771 ! tissue remodeling -relationship: regulates GO:0048771 ! tissue remodeling +intersection_of: RO:0002211 GO:0048771 ! regulates (processual) tissue remodeling +relationship: RO:0002211 GO:0048771 ! regulates (processual) tissue remodeling [Term] id: GO:0034104 @@ -71229,8 +70809,8 @@ synonym: "negative regulation of tissue remodelling" EXACT [] is_a: GO:0034103 ! regulation of tissue remodeling is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048771 ! tissue remodeling -relationship: negatively_regulates GO:0048771 ! tissue remodeling +intersection_of: RO:0002212 GO:0048771 ! negatively regulates tissue remodeling +relationship: RO:0002212 GO:0048771 ! negatively regulates tissue remodeling [Term] id: GO:0034105 @@ -71241,8 +70821,8 @@ synonym: "positive regulation of tissue remodelling" EXACT [] is_a: GO:0034103 ! regulation of tissue remodeling is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048771 ! tissue remodeling -relationship: positively_regulates GO:0048771 ! tissue remodeling +intersection_of: RO:0002213 GO:0048771 ! positively regulates tissue remodeling +relationship: RO:0002213 GO:0048771 ! positively regulates tissue remodeling [Term] id: GO:0034185 @@ -71251,9 +70831,9 @@ namespace: molecular_function def: "Binding to an apolipoprotein, the protein component of a lipoprotein complex." [GOC:BHF, GOC:rl] is_a: GO:0005515 ! protein binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:39015 ! apolipoprotein -relationship: has_primary_input CHEBI:39015 ! apolipoprotein +intersection_of: RO:0004009 CHEBI:39015 ! has primary input apolipoprotein relationship: never_in_taxon NCBITaxon:4751 ! Fungi +relationship: RO:0004009 CHEBI:39015 ! has primary input apolipoprotein [Term] id: GO:0034219 @@ -71266,10 +70846,10 @@ synonym: "transmembrane carbohydrate transport" EXACT [GOC:dph, GOC:tb] is_a: GO:0008643 ! carbohydrate transport is_a: GO:0055085 ! transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:16646 ! carbohydrate -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:16646 ! carbohydrate -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:16646 ! has primary input carbohydrate +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:16646 ! has primary input carbohydrate [Term] id: GO:0034220 @@ -71285,10 +70865,10 @@ synonym: "transmembrane ion transport" EXACT [GOC:dph, GOC:tb] is_a: GO:0006811 ! monoatomic ion transport is_a: GO:0055085 ! transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:24867 ! monoatomic ion -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:24867 ! monoatomic ion -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:24867 ! has primary input monoatomic ion +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:24867 ! has primary input monoatomic ion [Term] id: GO:0034242 @@ -71299,8 +70879,8 @@ is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051129 ! negative regulation of cellular component organization is_a: GO:0060142 ! regulation of syncytium formation by plasma membrane fusion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0000768 ! syncytium formation by plasma membrane fusion -relationship: negatively_regulates GO:0000768 ! syncytium formation by plasma membrane fusion +intersection_of: RO:0002212 GO:0000768 ! negatively regulates syncytium formation by plasma membrane fusion +relationship: RO:0002212 GO:0000768 ! negatively regulates syncytium formation by plasma membrane fusion [Term] id: GO:0034248 @@ -71311,8 +70891,8 @@ synonym: "regulation of amide metabolism" EXACT [] synonym: "regulation of cellular amide metabolic process" EXACT [] is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0043603 ! amide metabolic process -relationship: regulates GO:0043603 ! amide metabolic process +intersection_of: RO:0002211 GO:0043603 ! regulates (processual) amide metabolic process +relationship: RO:0002211 GO:0043603 ! regulates (processual) amide metabolic process [Term] id: GO:0034249 @@ -71324,8 +70904,8 @@ synonym: "negative regulation of cellular amide metabolic process" EXACT [] is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0034248 ! regulation of amide metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0043603 ! amide metabolic process -relationship: negatively_regulates GO:0043603 ! amide metabolic process +intersection_of: RO:0002212 GO:0043603 ! negatively regulates amide metabolic process +relationship: RO:0002212 GO:0043603 ! negatively regulates amide metabolic process [Term] id: GO:0034250 @@ -71337,8 +70917,8 @@ synonym: "positive regulation of cellular amide metabolic process" EXACT [] is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0034248 ! regulation of amide metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0043603 ! amide metabolic process -relationship: positively_regulates GO:0043603 ! amide metabolic process +intersection_of: RO:0002213 GO:0043603 ! positively regulates amide metabolic process +relationship: RO:0002213 GO:0043603 ! positively regulates amide metabolic process [Term] id: GO:0034251 @@ -71352,8 +70932,8 @@ synonym: "regulation of cellular amide catabolic process" EXACT [] is_a: GO:0009894 ! regulation of catabolic process is_a: GO:0034248 ! regulation of amide metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0043605 ! amide catabolic process -relationship: regulates GO:0043605 ! amide catabolic process +intersection_of: RO:0002211 GO:0043605 ! regulates (processual) amide catabolic process +relationship: RO:0002211 GO:0043605 ! regulates (processual) amide catabolic process [Term] id: GO:0034252 @@ -71368,8 +70948,8 @@ is_a: GO:0009895 ! negative regulation of catabolic process is_a: GO:0034249 ! negative regulation of amide metabolic process is_a: GO:0034251 ! regulation of amide catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0043605 ! amide catabolic process -relationship: negatively_regulates GO:0043605 ! amide catabolic process +intersection_of: RO:0002212 GO:0043605 ! negatively regulates amide catabolic process +relationship: RO:0002212 GO:0043605 ! negatively regulates amide catabolic process [Term] id: GO:0034253 @@ -71384,8 +70964,8 @@ is_a: GO:0009896 ! positive regulation of catabolic process is_a: GO:0034250 ! positive regulation of amide metabolic process is_a: GO:0034251 ! regulation of amide catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0043605 ! amide catabolic process -relationship: positively_regulates GO:0043605 ! amide catabolic process +intersection_of: RO:0002213 GO:0043605 ! positively regulates amide catabolic process +relationship: RO:0002213 GO:0043605 ! positively regulates amide catabolic process [Term] id: GO:0034284 @@ -71395,8 +70975,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to monosaccharide stimulus" EXACT [GOC:dos] is_a: GO:0009743 ! response to carbohydrate intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:35381 ! monosaccharide -relationship: has_primary_input CHEBI:35381 ! monosaccharide +intersection_of: RO:0004009 CHEBI:35381 ! has primary input monosaccharide +relationship: RO:0004009 CHEBI:35381 ! has primary input monosaccharide [Term] id: GO:0034308 @@ -71407,8 +70987,8 @@ synonym: "monohydric alcohol metabolic process" EXACT [] synonym: "primary alcohol metabolism" EXACT [GOC:mah] is_a: GO:0006066 ! alcohol metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:15734 ! primary alcohol -relationship: has_primary_input_or_output CHEBI:15734 ! primary alcohol +intersection_of: RO:0004007 CHEBI:15734 ! has primary input or output primary alcohol +relationship: RO:0004007 CHEBI:15734 ! has primary input or output primary alcohol [Term] id: GO:0034309 @@ -71423,8 +71003,8 @@ synonym: "primary alcohol synthesis" EXACT [GOC:mah] is_a: GO:0034308 ! primary alcohol metabolic process is_a: GO:0046165 ! alcohol biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:15734 ! primary alcohol -relationship: has_primary_output CHEBI:15734 ! primary alcohol +intersection_of: RO:0004008 CHEBI:15734 ! has primary output primary alcohol +relationship: RO:0004008 CHEBI:15734 ! has primary output primary alcohol [Term] id: GO:0034310 @@ -71438,8 +71018,8 @@ synonym: "primary alcohol degradation" EXACT [GOC:mah] is_a: GO:0034308 ! primary alcohol metabolic process is_a: GO:0046164 ! alcohol catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:15734 ! primary alcohol -relationship: has_primary_input CHEBI:15734 ! primary alcohol +intersection_of: RO:0004009 CHEBI:15734 ! has primary input primary alcohol +relationship: RO:0004009 CHEBI:15734 ! has primary input primary alcohol [Term] id: GO:0034329 @@ -71449,8 +71029,8 @@ def: "A cellular process that results in the aggregation, arrangement and bondin is_a: GO:0022607 ! cellular component assembly is_a: GO:0034330 ! cell junction organization intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0030054 ! cell junction -relationship: results_in_assembly_of GO:0030054 ! cell junction +intersection_of: RO:0002588 GO:0030054 ! results in assembly of cell junction +relationship: RO:0002588 GO:0030054 ! results in assembly of cell junction [Term] id: GO:0034330 @@ -71464,8 +71044,8 @@ synonym: "cell junction biogenesis" RELATED [] synonym: "cell junction organisation" EXACT [GOC:mah] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0030054 ! cell junction -relationship: results_in_organization_of GO:0030054 ! cell junction +intersection_of: RO:0002592 GO:0030054 ! results in organization of cell junction +relationship: RO:0002592 GO:0030054 ! results in organization of cell junction [Term] id: GO:0034349 @@ -71484,8 +71064,8 @@ synonym: "programmed cell death, glia" EXACT [] synonym: "programmed cell death, glial cells" EXACT [] is_a: GO:0006915 ! apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000125 ! glial cell -relationship: occurs_in CL:0000125 ! glial cell +intersection_of: BFO:0000066 CL:0000125 ! occurs in glial cell +relationship: BFO:0000066 CL:0000125 ! occurs in glial cell [Term] id: GO:0034350 @@ -71495,8 +71075,8 @@ def: "Any process that modulates the frequency, rate, or extent of glial cell ap synonym: "regulation of glial cell apoptosis" RELATED [] is_a: GO:0042981 ! regulation of apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0034349 ! glial cell apoptotic process -relationship: regulates GO:0034349 ! glial cell apoptotic process +intersection_of: RO:0002211 GO:0034349 ! regulates (processual) glial cell apoptotic process +relationship: RO:0002211 GO:0034349 ! regulates (processual) glial cell apoptotic process [Term] id: GO:0034351 @@ -71511,8 +71091,8 @@ synonym: "negative regulation of glial cell apoptosis" NARROW [] is_a: GO:0034350 ! regulation of glial cell apoptotic process is_a: GO:0043066 ! negative regulation of apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0034349 ! glial cell apoptotic process -relationship: negatively_regulates GO:0034349 ! glial cell apoptotic process +intersection_of: RO:0002212 GO:0034349 ! negatively regulates glial cell apoptotic process +relationship: RO:0002212 GO:0034349 ! negatively regulates glial cell apoptotic process [Term] id: GO:0034352 @@ -71528,8 +71108,8 @@ synonym: "upregulation of glial cell apoptosis" EXACT [] is_a: GO:0034350 ! regulation of glial cell apoptotic process is_a: GO:0043065 ! positive regulation of apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0034349 ! glial cell apoptotic process -relationship: positively_regulates GO:0034349 ! glial cell apoptotic process +intersection_of: RO:0002213 GO:0034349 ! positively regulates glial cell apoptotic process +relationship: RO:0002213 GO:0034349 ! positively regulates glial cell apoptotic process [Term] id: GO:0034389 @@ -71543,8 +71123,8 @@ synonym: "lipid particle organization" EXACT [] synonym: "lipid particle organization and biogenesis" BROAD [GOC:mah] is_a: GO:0006996 ! organelle organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005811 ! lipid droplet -relationship: results_in_organization_of GO:0005811 ! lipid droplet +intersection_of: RO:0002592 GO:0005811 ! results in organization of lipid droplet +relationship: RO:0002592 GO:0005811 ! results in organization of lipid droplet property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/13534" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/15963" xsd:anyURI @@ -71561,8 +71141,8 @@ synonym: "smooth muscle cell apoptosis" NARROW [] synonym: "smooth muscle cell programmed cell death by apoptosis" EXACT [] is_a: GO:0010657 ! muscle cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000192 ! smooth muscle cell -relationship: occurs_in CL:0000192 ! smooth muscle cell +intersection_of: BFO:0000066 CL:0000192 ! occurs in smooth muscle cell +relationship: BFO:0000066 CL:0000192 ! occurs in smooth muscle cell [Term] id: GO:0034391 @@ -71573,8 +71153,8 @@ synonym: "regulation of SMC apoptosis" EXACT [] synonym: "regulation of smooth muscle cell apoptosis" NARROW [] is_a: GO:0010660 ! regulation of muscle cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0034390 ! smooth muscle cell apoptotic process -relationship: regulates GO:0034390 ! smooth muscle cell apoptotic process +intersection_of: RO:0002211 GO:0034390 ! regulates (processual) smooth muscle cell apoptotic process +relationship: RO:0002211 GO:0034390 ! regulates (processual) smooth muscle cell apoptotic process [Term] id: GO:0034392 @@ -71590,8 +71170,8 @@ synonym: "negative regulation of smooth muscle cell apoptosis" NARROW [] is_a: GO:0010656 ! negative regulation of muscle cell apoptotic process is_a: GO:0034391 ! regulation of smooth muscle cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0034390 ! smooth muscle cell apoptotic process -relationship: negatively_regulates GO:0034390 ! smooth muscle cell apoptotic process +intersection_of: RO:0002212 GO:0034390 ! negatively regulates smooth muscle cell apoptotic process +relationship: RO:0002212 GO:0034390 ! negatively regulates smooth muscle cell apoptotic process [Term] id: GO:0034393 @@ -71608,8 +71188,8 @@ synonym: "upregulation of smooth muscle cell apoptosis" EXACT [] is_a: GO:0010661 ! positive regulation of muscle cell apoptotic process is_a: GO:0034391 ! regulation of smooth muscle cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0034390 ! smooth muscle cell apoptotic process -relationship: positively_regulates GO:0034390 ! smooth muscle cell apoptotic process +intersection_of: RO:0002213 GO:0034390 ! positively regulates smooth muscle cell apoptotic process +relationship: RO:0002213 GO:0034390 ! positively regulates smooth muscle cell apoptotic process [Term] id: GO:0034404 @@ -71631,8 +71211,8 @@ namespace: biological_process def: "Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the optic tectum towards target cells in the premotor reticulospinal system in the hindbrain." [GOC:dsf, PMID:15065115, PMID:17507550, PMID:8038988] is_a: GO:0021952 ! central nervous system projection neuron axonogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002164 ! tectobulbar tract -relationship: results_in_morphogenesis_of UBERON:0002164 ! tectobulbar tract +intersection_of: RO:0002298 UBERON:0002164 ! results in morphogenesis of tectobulbar tract +relationship: RO:0002298 UBERON:0002164 ! results in morphogenesis of tectobulbar tract [Term] id: GO:0034436 @@ -71642,8 +71222,8 @@ def: "The directed movement of a glycoprotein, a protein that contains covalentl is_a: GO:0045184 ! establishment of protein localization is_a: GO:1901264 ! carbohydrate derivative transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:17089 ! glycoprotein -relationship: has_primary_input CHEBI:17089 ! glycoprotein +intersection_of: RO:0004009 CHEBI:17089 ! has primary input glycoprotein +relationship: RO:0004009 CHEBI:17089 ! has primary input glycoprotein [Term] id: GO:0034486 @@ -71654,10 +71234,10 @@ comment: Note that this term is not intended for use in annotating lateral movem synonym: "vacuolar membrane transport" EXACT [] is_a: GO:0055085 ! transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: results_in_transport_across GO:0016020 ! membrane -intersection_of: results_in_transport_to_from_or_in GO:0005773 ! vacuole -relationship: results_in_transport_across GO:0016020 ! membrane -relationship: results_in_transport_to_from_or_in GO:0005773 ! vacuole +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0002344 GO:0005773 ! results in transport to from or in vacuole +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0002344 GO:0005773 ! results in transport to from or in vacuole [Term] id: GO:0034487 @@ -71668,10 +71248,10 @@ comment: Note that this term is not intended for use in annotating lateral movem synonym: "vacuolar amino acid membrane transport" EXACT [] is_a: GO:0003333 ! amino acid transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion -intersection_of: results_in_transport_across GO:0005774 ! vacuolar membrane -relationship: has_primary_input CHEBI:35238 ! amino acid zwitterion -relationship: results_in_transport_across GO:0005774 ! vacuolar membrane +intersection_of: RO:0002342 GO:0005774 ! results in transport across vacuolar membrane +intersection_of: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion +relationship: RO:0002342 GO:0005774 ! results in transport across vacuolar membrane +relationship: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion [Term] id: GO:0034502 @@ -71682,8 +71262,8 @@ synonym: "condensin localization to chromosome" NARROW [] synonym: "protein localisation to chromosome" EXACT [GOC:mah] is_a: GO:0033365 ! protein localization to organelle intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005694 ! chromosome -relationship: has_target_end_location GO:0005694 ! chromosome +intersection_of: RO:0002339 GO:0005694 ! has target end location chromosome +relationship: RO:0002339 GO:0005694 ! has target end location chromosome [Term] id: GO:0034504 @@ -71697,8 +71277,8 @@ synonym: "protein localization in nucleus" EXACT [GOC:mah] synonym: "protein targeting to nucleus" RELATED [] is_a: GO:0033365 ! protein localization to organelle intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005634 ! nucleus -relationship: has_target_end_location GO:0005634 ! nucleus +intersection_of: RO:0002339 GO:0005634 ! has target end location nucleus +relationship: RO:0002339 GO:0005634 ! has target end location nucleus creation_date: 2012-11-07T15:45:54Z [Term] @@ -71709,9 +71289,9 @@ def: "The process in which calcium salts are deposited into calcareous tooth str synonym: "tooth calcification" EXACT [] is_a: GO:0031214 ! biomineral tissue development intersection_of: GO:0031214 ! biomineral tissue development -intersection_of: results_in_maturation_of UBERON:0001091 ! calcareous tooth +intersection_of: RO:0002299 UBERON:0001091 ! results in maturation of calcareous tooth relationship: part_of GO:0042476 ! odontogenesis -relationship: results_in_maturation_of UBERON:0001091 ! calcareous tooth +relationship: RO:0002299 UBERON:0001091 ! results in maturation of calcareous tooth [Term] id: GO:0034654 @@ -71725,8 +71305,8 @@ synonym: "nucleobase, nucleoside, nucleotide and nucleic acid synthesis" NARROW is_a: GO:0006139 ! nucleobase-containing compound metabolic process is_a: GO:0009058 ! biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:61120 ! nucleobase-containing molecular entity -relationship: has_primary_output CHEBI:61120 ! nucleobase-containing molecular entity +intersection_of: RO:0004008 CHEBI:61120 ! has primary output nucleobase-containing molecular entity +relationship: RO:0004008 CHEBI:61120 ! has primary output nucleobase-containing molecular entity [Term] id: GO:0034655 @@ -71741,8 +71321,8 @@ synonym: "nucleobase, nucleoside, nucleotide and nucleic acid degradation" EXACT is_a: GO:0006139 ! nucleobase-containing compound metabolic process is_a: GO:0009056 ! catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:61120 ! nucleobase-containing molecular entity -relationship: has_primary_input CHEBI:61120 ! nucleobase-containing molecular entity +intersection_of: RO:0004009 CHEBI:61120 ! has primary input nucleobase-containing molecular entity +relationship: RO:0004009 CHEBI:61120 ! has primary input nucleobase-containing molecular entity [Term] id: GO:0034656 @@ -71795,8 +71375,8 @@ is_a: GO:0006826 ! iron ion transport is_a: GO:0098655 ! monoatomic cation transmembrane transport is_a: GO:0098662 ! inorganic cation transmembrane transport intersection_of: GO:0006826 ! iron ion transport -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0002342 GO:0016020 ! results in transport across membrane created_by: vw creation_date: 2015-02-06T11:29:22Z @@ -71812,8 +71392,8 @@ synonym: "regulation of iron ion import" NARROW [] synonym: "regulation of iron transport" EXACT [] is_a: GO:0010959 ! regulation of metal ion transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006826 ! iron ion transport -relationship: regulates GO:0006826 ! iron ion transport +intersection_of: RO:0002211 GO:0006826 ! regulates (processual) iron ion transport +relationship: RO:0002211 GO:0006826 ! regulates (processual) iron ion transport created_by: mah creation_date: 2012-04-18T04:00:14Z @@ -71830,8 +71410,8 @@ synonym: "negative regulation of iron transport" EXACT [] is_a: GO:0034756 ! regulation of iron ion transport is_a: GO:0043271 ! negative regulation of monoatomic ion transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006826 ! iron ion transport -relationship: negatively_regulates GO:0006826 ! iron ion transport +intersection_of: RO:0002212 GO:0006826 ! negatively regulates iron ion transport +relationship: RO:0002212 GO:0006826 ! negatively regulates iron ion transport [Term] id: GO:0034758 @@ -71847,8 +71427,8 @@ synonym: "upregulation of iron ion transport" EXACT [] is_a: GO:0034756 ! regulation of iron ion transport is_a: GO:0043270 ! positive regulation of monoatomic ion transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006826 ! iron ion transport -relationship: positively_regulates GO:0006826 ! iron ion transport +intersection_of: RO:0002213 GO:0006826 ! positively regulates iron ion transport +relationship: RO:0002213 GO:0006826 ! positively regulates iron ion transport [Term] id: GO:0034759 @@ -71862,8 +71442,8 @@ synonym: "regulation of transmembrane iron transport" EXACT [] is_a: GO:0034756 ! regulation of iron ion transport is_a: GO:1904062 ! regulation of monoatomic cation transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0034755 ! iron ion transmembrane transport -relationship: regulates GO:0034755 ! iron ion transmembrane transport +intersection_of: RO:0002211 GO:0034755 ! regulates (processual) iron ion transmembrane transport +relationship: RO:0002211 GO:0034755 ! regulates (processual) iron ion transmembrane transport [Term] id: GO:0034760 @@ -71881,8 +71461,8 @@ is_a: GO:0034757 ! negative regulation of iron ion transport is_a: GO:0034759 ! regulation of iron ion transmembrane transport is_a: GO:1904063 ! negative regulation of cation transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0034755 ! iron ion transmembrane transport -relationship: negatively_regulates GO:0034755 ! iron ion transmembrane transport +intersection_of: RO:0002212 GO:0034755 ! negatively regulates iron ion transmembrane transport +relationship: RO:0002212 GO:0034755 ! negatively regulates iron ion transmembrane transport [Term] id: GO:0034761 @@ -71901,8 +71481,8 @@ is_a: GO:0034758 ! positive regulation of iron ion transport is_a: GO:0034759 ! regulation of iron ion transmembrane transport is_a: GO:1904064 ! positive regulation of cation transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0034755 ! iron ion transmembrane transport -relationship: positively_regulates GO:0034755 ! iron ion transmembrane transport +intersection_of: RO:0002213 GO:0034755 ! positively regulates iron ion transmembrane transport +relationship: RO:0002213 GO:0034755 ! positively regulates iron ion transmembrane transport [Term] id: GO:0034762 @@ -71913,8 +71493,8 @@ synonym: "regulation of membrane transport" EXACT [] is_a: GO:0050794 ! regulation of cellular process is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0055085 ! transmembrane transport -relationship: regulates GO:0055085 ! transmembrane transport +intersection_of: RO:0002211 GO:0055085 ! regulates (processual) transmembrane transport +relationship: RO:0002211 GO:0055085 ! regulates (processual) transmembrane transport [Term] id: GO:0034763 @@ -71930,8 +71510,8 @@ is_a: GO:0034762 ! regulation of transmembrane transport is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:0051051 ! negative regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0055085 ! transmembrane transport -relationship: negatively_regulates GO:0055085 ! transmembrane transport +intersection_of: RO:0002212 GO:0055085 ! negatively regulates transmembrane transport +relationship: RO:0002212 GO:0055085 ! negatively regulates transmembrane transport [Term] id: GO:0034764 @@ -71948,8 +71528,8 @@ is_a: GO:0034762 ! regulation of transmembrane transport is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0051050 ! positive regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0055085 ! transmembrane transport -relationship: positively_regulates GO:0055085 ! transmembrane transport +intersection_of: RO:0002213 GO:0055085 ! positively regulates transmembrane transport +relationship: RO:0002213 GO:0055085 ! positively regulates transmembrane transport [Term] id: GO:0034765 @@ -71962,8 +71542,8 @@ synonym: "regulation of transmembrane ion transport" EXACT [GOC:dph, GOC:tb] is_a: GO:0034762 ! regulation of transmembrane transport is_a: GO:0043269 ! regulation of monoatomic ion transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0034220 ! monoatomic ion transmembrane transport -relationship: regulates GO:0034220 ! monoatomic ion transmembrane transport +intersection_of: RO:0002211 GO:0034220 ! regulates (processual) monoatomic ion transmembrane transport +relationship: RO:0002211 GO:0034220 ! regulates (processual) monoatomic ion transmembrane transport [Term] id: GO:0034766 @@ -71981,8 +71561,8 @@ is_a: GO:0034763 ! negative regulation of transmembrane transport is_a: GO:0034765 ! regulation of monoatomic ion transmembrane transport is_a: GO:0043271 ! negative regulation of monoatomic ion transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0034220 ! monoatomic ion transmembrane transport -relationship: negatively_regulates GO:0034220 ! monoatomic ion transmembrane transport +intersection_of: RO:0002212 GO:0034220 ! negatively regulates monoatomic ion transmembrane transport +relationship: RO:0002212 GO:0034220 ! negatively regulates monoatomic ion transmembrane transport [Term] id: GO:0034767 @@ -72001,8 +71581,8 @@ is_a: GO:0034764 ! positive regulation of transmembrane transport is_a: GO:0034765 ! regulation of monoatomic ion transmembrane transport is_a: GO:0043270 ! positive regulation of monoatomic ion transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0034220 ! monoatomic ion transmembrane transport -relationship: positively_regulates GO:0034220 ! monoatomic ion transmembrane transport +intersection_of: RO:0002213 GO:0034220 ! positively regulates monoatomic ion transmembrane transport +relationship: RO:0002213 GO:0034220 ! positively regulates monoatomic ion transmembrane transport [Term] id: GO:0034769 @@ -72015,8 +71595,8 @@ synonym: "basal lamina disassembly" RELATED [] is_a: GO:0022617 ! extracellular matrix disassembly is_a: GO:0071711 ! basement membrane organization intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0005604 ! basement membrane -relationship: results_in_disassembly_of GO:0005604 ! basement membrane +intersection_of: RO:0002590 GO:0005604 ! results in disassembly of basement membrane +relationship: RO:0002590 GO:0005604 ! results in disassembly of basement membrane created_by: dph creation_date: 2009-08-13T11:27:24Z @@ -72028,8 +71608,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to histamine stimulus" EXACT [] is_a: GO:1901698 ! response to nitrogen compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:58432 ! histaminium -relationship: has_primary_input CHEBI:58432 ! histaminium +intersection_of: RO:0004009 CHEBI:58432 ! has primary input histaminium +relationship: RO:0004009 CHEBI:58432 ! has primary input histaminium [Term] id: GO:0035019 @@ -72038,8 +71618,8 @@ namespace: biological_process def: "Any process by which an organism retains a population of somatic stem cells, undifferentiated cells in the embryo or adult which can undergo unlimited division and give rise to cell types of the body other than those of the germ-line." [GOC:bf, ISBN:0582227089] is_a: GO:0019827 ! stem cell population maintenance intersection_of: GO:0098727 ! maintenance of cell number -intersection_of: acts_on_population_of CL:0000723 ! somatic stem cell -relationship: acts_on_population_of CL:0000723 ! somatic stem cell +intersection_of: RO:0012003 CL:0000723 ! acts on population of somatic stem cell +relationship: RO:0012003 CL:0000723 ! acts on population of somatic stem cell [Term] id: GO:0035039 @@ -72050,9 +71630,9 @@ synonym: "male pronucleus formation" RELATED [GOC:dph] is_a: GO:0006997 ! nucleus organization is_a: GO:0070925 ! organelle assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0001940 ! male pronucleus +intersection_of: RO:0002588 GO:0001940 ! results in assembly of male pronucleus relationship: part_of GO:0007338 ! single fertilization -relationship: results_in_assembly_of GO:0001940 ! male pronucleus +relationship: RO:0002588 GO:0001940 ! results in assembly of male pronucleus [Term] id: GO:0035040 @@ -72061,8 +71641,8 @@ namespace: biological_process def: "Removal of the sperm nuclear envelope, allowing entry of maternal factors into the sperm nucleus." [GOC:bf, PMID:11735001] is_a: GO:0051081 ! nuclear membrane disassembly intersection_of: GO:0051081 ! nuclear membrane disassembly -intersection_of: occurs_in CL:0000019 ! sperm -relationship: occurs_in CL:0000019 ! sperm +intersection_of: BFO:0000066 CL:0000019 ! occurs in sperm +relationship: BFO:0000066 CL:0000019 ! occurs in sperm relationship: part_of GO:0035039 ! male pronucleus assembly [Term] @@ -72077,9 +71657,9 @@ is_a: GO:0007009 ! plasma membrane organization is_a: GO:0022412 ! cellular process involved in reproduction in multicellular organism is_a: GO:0030397 ! membrane disassembly intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0097524 ! sperm plasma membrane +intersection_of: RO:0002590 GO:0097524 ! results in disassembly of sperm plasma membrane relationship: part_of GO:0007338 ! single fertilization -relationship: results_in_disassembly_of GO:0097524 ! sperm plasma membrane +relationship: RO:0002590 GO:0097524 ! results in disassembly of sperm plasma membrane [Term] id: GO:0035050 @@ -72089,11 +71669,11 @@ def: "The process whose specific outcome is the progression of the embryonic hea is_a: GO:0035295 ! tube development is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004141 ! heart tube +intersection_of: RO:0002296 UBERON:0004141 ! results in development of heart tube relationship: part_of GO:0007507 ! heart development relationship: part_of GO:0009790 ! embryo development relationship: part_of GO:0048568 ! embryonic organ development -relationship: results_in_development_of UBERON:0004141 ! heart tube +relationship: RO:0002296 UBERON:0004141 ! results in development of heart tube [Term] id: GO:0035051 @@ -72104,9 +71684,9 @@ synonym: "cardiac cell differentiation" EXACT [] synonym: "heart cell differentiation" EXACT [] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002494 ! cardiocyte +intersection_of: RO:0002315 CL:0002494 ! results in acquisition of features of cardiocyte relationship: part_of GO:0007507 ! heart development -relationship: results_in_acquisition_of_features_of CL:0002494 ! cardiocyte +relationship: RO:0002315 CL:0002494 ! results in acquisition of features of cardiocyte [Term] id: GO:0035082 @@ -72125,9 +71705,9 @@ synonym: "flagellum axoneme assembly" EXACT [] is_a: GO:0001578 ! microtubule bundle formation is_a: GO:0022607 ! cellular component assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0005930 ! axoneme +intersection_of: RO:0002588 GO:0005930 ! results in assembly of axoneme relationship: part_of GO:0060271 ! cilium assembly -relationship: results_in_assembly_of GO:0005930 ! axoneme +relationship: RO:0002588 GO:0005930 ! results in assembly of axoneme [Term] id: GO:0035099 @@ -72138,11 +71718,11 @@ synonym: "arthropod blood cell migration" EXACT [] synonym: "hemocyte cell migration" EXACT [] is_a: GO:0016477 ! cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000387 ! hemocyte (sensu Arthropoda) +intersection_of: RO:0002565 CL:0000387 ! results in movement of hemocyte (sensu Arthropoda) relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of GO:0035162 ! embryonic hemopoiesis -relationship: results_in_movement_of CL:0000387 ! hemocyte (sensu Arthropoda) +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda +relationship: RO:0002565 CL:0000387 ! results in movement of hemocyte (sensu Arthropoda) [Term] id: GO:0035107 @@ -72151,9 +71731,9 @@ namespace: biological_process def: "The process in which the anatomical structures of appendages are generated and organized. An appendage is an organ or part that is attached to the trunk of an organism, such as a limb or a branch." [ISBN:0582227089] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000026 ! appendage +intersection_of: RO:0002298 UBERON:0000026 ! results in morphogenesis of appendage relationship: part_of GO:0048736 ! appendage development -relationship: results_in_morphogenesis_of UBERON:0000026 ! appendage +relationship: RO:0002298 UBERON:0000026 ! results in morphogenesis of appendage [Term] id: GO:0035108 @@ -72163,9 +71743,9 @@ def: "The process in which the anatomical structures of a limb are generated and synonym: "limb bud morphogenesis" NARROW [GOC:dph] is_a: GO:0035107 ! appendage morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002101 ! limb +intersection_of: RO:0002298 UBERON:0002101 ! results in morphogenesis of limb relationship: part_of GO:0060173 ! limb development -relationship: results_in_morphogenesis_of UBERON:0002101 ! limb +relationship: RO:0002298 UBERON:0002101 ! results in morphogenesis of limb [Term] id: GO:0035112 @@ -72176,9 +71756,9 @@ synonym: "genital morphogenesis" RELATED [] is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000990 ! reproductive system +intersection_of: RO:0002298 UBERON:0000990 ! results in morphogenesis of reproductive system relationship: part_of GO:0048806 ! genitalia development -relationship: results_in_morphogenesis_of UBERON:0000990 ! reproductive system +relationship: RO:0002298 UBERON:0000990 ! results in morphogenesis of reproductive system [Term] id: GO:0035114 @@ -72205,8 +71785,8 @@ def: "The process in which the anatomical structures of the forelimb are generat synonym: "arm morphogenesis" NARROW [GOC:bf, GOC:cjm] is_a: GO:0035108 ! limb morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002102 ! forelimb -relationship: results_in_morphogenesis_of UBERON:0002102 ! forelimb +intersection_of: RO:0002298 UBERON:0002102 ! results in morphogenesis of forelimb +relationship: RO:0002298 UBERON:0002102 ! results in morphogenesis of forelimb [Term] id: GO:0035137 @@ -72215,8 +71795,8 @@ namespace: biological_process def: "The process in which the anatomical structures of the hindlimb are generated and organized." [GOC:go_curators] is_a: GO:0035108 ! limb morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002103 ! hindlimb -relationship: results_in_morphogenesis_of UBERON:0002103 ! hindlimb +intersection_of: RO:0002298 UBERON:0002103 ! results in morphogenesis of hindlimb +relationship: RO:0002298 UBERON:0002103 ! results in morphogenesis of hindlimb [Term] id: GO:0035138 @@ -72225,9 +71805,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the pectoral fin are generated and organized. Pectoral fins are bilaterally paired fins mounted laterally and located behind the gill covers of fish. These fins are used for lateral mobility and propulsion." [GOC:dgh] is_a: GO:0033334 ! fin morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000151 ! pectoral fin +intersection_of: RO:0002298 UBERON:0000151 ! results in morphogenesis of pectoral fin relationship: part_of GO:0033339 ! pectoral fin development -relationship: results_in_morphogenesis_of UBERON:0000151 ! pectoral fin +relationship: RO:0002298 UBERON:0000151 ! results in morphogenesis of pectoral fin [Term] id: GO:0035139 @@ -72236,9 +71816,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the pelvic fin are generated and organized. Pelvic fins are bilaterally paired fins mounted in a ventral-lateral position on most fish. These fins are used primarily for lateral mobility and propulsion." [GOC:dgh] is_a: GO:0033334 ! fin morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000152 ! pelvic fin +intersection_of: RO:0002298 UBERON:0000152 ! results in morphogenesis of pelvic fin relationship: part_of GO:0033340 ! pelvic fin development -relationship: results_in_morphogenesis_of UBERON:0000152 ! pelvic fin +relationship: RO:0002298 UBERON:0000152 ! results in morphogenesis of pelvic fin [Term] id: GO:0035141 @@ -72249,9 +71829,9 @@ synonym: "median fin morphogenesis" EXACT [] synonym: "unpaired fin morphogenesis" EXACT [] is_a: GO:0033334 ! fin morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:4000162 ! median fin +intersection_of: RO:0002298 UBERON:4000162 ! results in morphogenesis of median fin relationship: part_of GO:0033338 ! medial fin development -relationship: results_in_morphogenesis_of UBERON:4000162 ! median fin +relationship: RO:0002298 UBERON:4000162 ! results in morphogenesis of median fin [Term] id: GO:0035142 @@ -72260,9 +71840,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the dorsal fin are generated and organized. A dorsal fin is an unpaired medial fin on the dorsal aspect of fish that provides lateral stability while swimming. Generally fish have one or two dorsal fins." [GOC:dgh] is_a: GO:0035141 ! medial fin morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003097 ! dorsal fin +intersection_of: RO:0002298 UBERON:0003097 ! results in morphogenesis of dorsal fin relationship: part_of GO:0033337 ! dorsal fin development -relationship: results_in_morphogenesis_of UBERON:0003097 ! dorsal fin +relationship: RO:0002298 UBERON:0003097 ! results in morphogenesis of dorsal fin [Term] id: GO:0035143 @@ -72271,9 +71851,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the caudal fin are generated and organized. A caudal fin is an unpaired medial fin mounted at the caudal end of the fish, and is the main fin used for propulsion." [GOC:dgh] is_a: GO:0035141 ! medial fin morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:4000164 ! caudal fin +intersection_of: RO:0002298 UBERON:4000164 ! results in morphogenesis of caudal fin relationship: part_of GO:0033336 ! caudal fin development -relationship: results_in_morphogenesis_of UBERON:4000164 ! caudal fin +relationship: RO:0002298 UBERON:4000164 ! results in morphogenesis of caudal fin [Term] id: GO:0035144 @@ -72282,9 +71862,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the anal fin are generated and organized. An anal fin is an unpaired medial fin on the ventral aspect near the caudal end of a fish, which provides lateral stability while swimming." [GOC:dgh] is_a: GO:0035141 ! medial fin morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:4000163 ! anal fin +intersection_of: RO:0002298 UBERON:4000163 ! results in morphogenesis of anal fin relationship: part_of GO:0033335 ! anal fin development -relationship: results_in_morphogenesis_of UBERON:4000163 ! anal fin +relationship: RO:0002298 UBERON:4000163 ! results in morphogenesis of anal fin [Term] id: GO:0035148 @@ -72295,9 +71875,9 @@ synonym: "lumen formation in an anatomical structure" RELATED [GOC:dph, GOC:mah] synonym: "tube lumen formation" EXACT [GOC:dph, GOC:mah] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000025 ! tube +intersection_of: RO:0002297 UBERON:0000025 ! results in formation of anatomical entity tube relationship: part_of GO:0035239 ! tube morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0000025 ! tube +relationship: RO:0002297 UBERON:0000025 ! results in formation of anatomical entity tube [Term] id: GO:0035162 @@ -72319,10 +71899,10 @@ synonym: "arthropod blood cell proliferation" EXACT [] is_a: GO:0002376 ! immune system process is_a: GO:0008283 ! cell population proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000387 ! hemocyte (sensu Arthropoda) -relationship: acts_on_population_of CL:0000387 ! hemocyte (sensu Arthropoda) +intersection_of: RO:0012003 CL:0000387 ! acts on population of hemocyte (sensu Arthropoda) relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda +relationship: RO:0012003 CL:0000387 ! acts on population of hemocyte (sensu Arthropoda) [Term] id: GO:0035188 @@ -72339,8 +71919,8 @@ namespace: biological_process def: "The directed movement of nuclei within the syncytial embryo of insects. These precise temporal and spatial patterns of nuclear movement are coordinated with mitotic divisions and are required during blastoderm formation to reposition dividing nuclei from the interior of the syncytial embryo to the cortex." [GOC:bf, ISBN:0879694238, PMID:8314839] is_a: GO:0007097 ! nuclear migration intersection_of: GO:0007097 ! nuclear migration -intersection_of: occurs_in CL:0000228 ! multinucleate cell -relationship: occurs_in CL:0000228 ! multinucleate cell +intersection_of: BFO:0000066 CL:0000228 ! occurs in multinucleate cell +relationship: BFO:0000066 CL:0000228 ! occurs in multinucleate cell relationship: part_of GO:0001700 ! embryonic development via the syncytial blastoderm [Term] @@ -72354,8 +71934,8 @@ is_a: GO:0042127 ! regulation of cell population proliferation is_a: GO:0050793 ! regulation of developmental process is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035172 ! hemocyte proliferation -relationship: regulates GO:0035172 ! hemocyte proliferation +intersection_of: RO:0002211 GO:0035172 ! regulates (processual) hemocyte proliferation +relationship: RO:0002211 GO:0035172 ! regulates (processual) hemocyte proliferation [Term] id: GO:0035207 @@ -72371,10 +71951,10 @@ is_a: GO:0002683 ! negative regulation of immune system process is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:0035206 ! regulation of hemocyte proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035172 ! hemocyte proliferation +intersection_of: RO:0002212 GO:0035172 ! negatively regulates hemocyte proliferation relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: negatively_regulates GO:0035172 ! hemocyte proliferation -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda +relationship: RO:0002212 GO:0035172 ! negatively regulates hemocyte proliferation [Term] id: GO:0035208 @@ -72391,8 +71971,8 @@ is_a: GO:0002684 ! positive regulation of immune system process is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:0035206 ! regulation of hemocyte proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035172 ! hemocyte proliferation -relationship: positively_regulates GO:0035172 ! hemocyte proliferation +intersection_of: RO:0002213 GO:0035172 ! positively regulates hemocyte proliferation +relationship: RO:0002213 GO:0035172 ! positively regulates hemocyte proliferation [Term] id: GO:0035209 @@ -72401,9 +71981,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the pupa over time, from its formation to the mature structure. The pupa is a dormant life stage interposed between the larval and the adult stages in insects that undergo a complete metamorphosis." [GOC:bf, GOC:mtg_sensu] is_a: GO:0002165 ! instar larval or pupal development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003143 ! pupa +intersection_of: RO:0002296 UBERON:0003143 ! results in development of pupa relationship: ends_with GO:0007562 ! eclosion -relationship: results_in_development_of UBERON:0003143 ! pupa +relationship: RO:0002296 UBERON:0003143 ! results in development of pupa relationship: starts_with GO:0018989 ! apolysis [Term] @@ -72414,8 +71994,8 @@ def: "The process in which the anatomical structures of a spermathecum, a sperm comment: See also the fly_anatomy.ontology term 'spermathecum ; FBbt:00004921'. is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000994 ! spermathecum -relationship: results_in_morphogenesis_of UBERON:0000994 ! spermathecum +intersection_of: RO:0002298 UBERON:0000994 ! results in morphogenesis of spermathecum +relationship: RO:0002298 UBERON:0000994 ! results in morphogenesis of spermathecum [Term] id: GO:0035214 @@ -72455,8 +72035,8 @@ synonym: "programmed cell death, ectopic germ cells" EXACT [] is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0010623 ! programmed cell death involved in cell development intersection_of: GO:0012501 ! programmed cell death -intersection_of: occurs_in CL:0000586 ! germ cell -relationship: occurs_in CL:0000586 ! germ cell +intersection_of: BFO:0000066 CL:0000586 ! occurs in germ cell +relationship: BFO:0000066 CL:0000586 ! occurs in germ cell [Term] id: GO:0035239 @@ -72465,9 +72045,9 @@ namespace: biological_process def: "The process in which the anatomical structures of a tube are generated and organized. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system." [GOC:bf, PMID:14624839] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000025 ! tube +intersection_of: RO:0002298 UBERON:0000025 ! results in morphogenesis of tube relationship: part_of GO:0035295 ! tube development -relationship: results_in_morphogenesis_of UBERON:0000025 ! tube +relationship: RO:0002298 UBERON:0000025 ! results in morphogenesis of tube [Term] id: GO:0035240 @@ -72476,8 +72056,8 @@ namespace: molecular_function def: "Binding to dopamine, a catecholamine neurotransmitter formed by aromatic-L-amino-acid decarboxylase from 3,4-dihydroxy-L-phenylalanine." [ISBN:0198506732] is_a: GO:0043169 ! cation binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:59905 ! dopaminium(1+) -relationship: has_primary_input CHEBI:59905 ! dopaminium(1+) +intersection_of: RO:0004009 CHEBI:59905 ! has primary input dopaminium(1+) +relationship: RO:0004009 CHEBI:59905 ! has primary input dopaminium(1+) [Term] id: GO:0035249 @@ -72494,8 +72074,8 @@ namespace: biological_process def: "The process in which the anatomical structures of the internal genitalia are generated and organized. The internal genitalia are the internal sex organs such as the uterine tube, the uterus and the vagina in female mammals, and the testis, seminal vesicle, ejaculatory duct and prostate in male mammals." [PMID:24793987, PMID:25247640] is_a: GO:0035112 ! genitalia morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004175 ! internal genitalia -relationship: results_in_morphogenesis_of UBERON:0004175 ! internal genitalia +intersection_of: RO:0002298 UBERON:0004175 ! results in morphogenesis of internal genitalia +relationship: RO:0002298 UBERON:0004175 ! results in morphogenesis of internal genitalia [Term] id: GO:0035261 @@ -72504,8 +72084,8 @@ namespace: biological_process def: "The process in which the anatomical structures of the external genitalia are generated and organized. The external genitalia are the outer sex organs, such as the penis or vulva in mammals." [PMID:24793987, PMID:25247640] is_a: GO:0035112 ! genitalia morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004176 ! external genitalia -relationship: results_in_morphogenesis_of UBERON:0004176 ! external genitalia +intersection_of: RO:0002298 UBERON:0004176 ! results in morphogenesis of external genitalia +relationship: RO:0002298 UBERON:0004176 ! results in morphogenesis of external genitalia [Term] id: GO:0035262 @@ -72515,9 +72095,9 @@ def: "The process in which the anatomical structures of the gonads are generated is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000991 ! gonad +intersection_of: RO:0002298 UBERON:0000991 ! results in morphogenesis of gonad relationship: part_of GO:0008406 ! gonad development -relationship: results_in_morphogenesis_of UBERON:0000991 ! gonad +relationship: RO:0002298 UBERON:0000991 ! results in morphogenesis of gonad [Term] id: GO:0035264 @@ -72528,8 +72108,8 @@ synonym: "body growth" RELATED [] is_a: GO:0032501 ! multicellular organismal process is_a: GO:0048589 ! developmental growth intersection_of: GO:0048589 ! developmental growth -intersection_of: results_in_growth_of UBERON:0000468 ! multicellular organism -relationship: results_in_growth_of UBERON:0000468 ! multicellular organism +intersection_of: RO:0002343 UBERON:0000468 ! results in growth of multicellular organism +relationship: RO:0002343 UBERON:0000468 ! results in growth of multicellular organism [Term] id: GO:0035265 @@ -72539,8 +72119,8 @@ def: "The increase in size or mass of an organ. Organs are commonly observed as is_a: GO:0032501 ! multicellular organismal process is_a: GO:0048589 ! developmental growth intersection_of: GO:0048589 ! developmental growth -intersection_of: results_in_growth_of UBERON:0000062 ! organ -relationship: results_in_growth_of UBERON:0000062 ! organ +intersection_of: RO:0002343 UBERON:0000062 ! results in growth of organ +relationship: RO:0002343 UBERON:0000062 ! results in growth of organ [Term] id: GO:0035270 @@ -72549,8 +72129,8 @@ namespace: biological_process def: "Progression of the endocrine system over time, from its formation to a mature structure. The endocrine system is a system of hormones and ductless glands, where the glands release hormones directly into the blood, lymph or other intercellular fluid, and the hormones circulate within the body to affect distant organs. The major glands that make up the human endocrine system are the hypothalamus, pituitary, thyroid, parathryoids, adrenals, pineal body, and the reproductive glands which include the ovaries and testes." [GOC:bf, Wikipedia:Development_of_the_endocrine_system] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000949 ! endocrine system -relationship: results_in_development_of UBERON:0000949 ! endocrine system +intersection_of: RO:0002296 UBERON:0000949 ! results in development of endocrine system +relationship: RO:0002296 UBERON:0000949 ! results in development of endocrine system [Term] id: GO:0035272 @@ -72559,8 +72139,8 @@ namespace: biological_process def: "Progression of the exocrine system over time, from its formation to a mature structure. The exocrine system is a system of hormones and glands, where the glands secrete straight to a target site via ducts or tubes. The human exocrine system includes the salivary glands, sweat glands and many glands of the digestive system." [GOC:bf, Wikipedia:Exocrine_gland] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002330 ! exocrine system -relationship: results_in_development_of UBERON:0002330 ! exocrine system +intersection_of: RO:0002296 UBERON:0002330 ! results in development of exocrine system +relationship: RO:0002296 UBERON:0002330 ! results in development of exocrine system [Term] id: GO:0035282 @@ -72585,9 +72165,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a tube over time, from its initial formation to a mature structure. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts." [PMID:12526790] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000025 ! tube +intersection_of: RO:0002296 UBERON:0000025 ! results in development of tube relationship: part_of GO:0007275 ! multicellular organism development -relationship: results_in_development_of UBERON:0000025 ! tube +relationship: RO:0002296 UBERON:0000025 ! results in development of tube [Term] id: GO:0035315 @@ -72597,8 +72177,8 @@ def: "The process in which a relatively unspecialized cell acquires specialized is_a: GO:0009913 ! epidermal cell differentiation is_a: GO:0030182 ! neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000855 ! sensory hair cell -relationship: results_in_acquisition_of_features_of CL:0000855 ! sensory hair cell +intersection_of: RO:0002315 CL:0000855 ! results in acquisition of features of sensory hair cell +relationship: RO:0002315 CL:0000855 ! results in acquisition of features of sensory hair cell [Term] id: GO:0035316 @@ -72611,11 +72191,11 @@ synonym: "trichome organisation" BROAD [] synonym: "trichome organization and biogenesis" BROAD [] is_a: GO:0120036 ! plasma membrane bounded cell projection organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0070451 ! cell hair +intersection_of: RO:0002592 GO:0070451 ! results in organization of cell hair relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of GO:0035315 ! hair cell differentiation -relationship: results_in_organization_of GO:0070451 ! cell hair +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda +relationship: RO:0002592 GO:0070451 ! results in organization of cell hair [Term] id: GO:0035317 @@ -72629,9 +72209,9 @@ synonym: "wing hair organization and biogenesis" RELATED [GOC:mah] synonym: "wing trichome organization and biogenesis" EXACT [] is_a: GO:0035316 ! non-sensory hair organization intersection_of: GO:0035316 ! non-sensory hair organization -intersection_of: results_in_maturation_of UBERON:0000984 ! imaginal disc-derived wing +intersection_of: RO:0002299 UBERON:0000984 ! results in maturation of imaginal disc-derived wing relationship: part_of GO:0007476 ! imaginal disc-derived wing morphogenesis -relationship: results_in_maturation_of UBERON:0000984 ! imaginal disc-derived wing +relationship: RO:0002299 UBERON:0000984 ! results in maturation of imaginal disc-derived wing [Term] id: GO:0035322 @@ -72666,8 +72246,8 @@ def: "A process in which a protein is transported to, or maintained at, a microt synonym: "protein localisation to microtubule" EXACT [GOC:mah] is_a: GO:0072698 ! protein localization to microtubule cytoskeleton intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005874 ! microtubule -relationship: has_target_end_location GO:0005874 ! microtubule +intersection_of: RO:0002339 GO:0005874 ! has target end location microtubule +relationship: RO:0002339 GO:0005874 ! has target end location microtubule created_by: bf creation_date: 2010-03-11T11:00:56Z @@ -72679,8 +72259,8 @@ def: "Binding to chondroitin sulfate, a glycosaminoglycan made up of two alterna is_a: GO:0005539 ! glycosaminoglycan binding is_a: GO:1901681 ! sulfur compound binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:37397 ! chondroitin sulfate -relationship: has_primary_input CHEBI:37397 ! chondroitin sulfate +intersection_of: RO:0004009 CHEBI:37397 ! has primary input chondroitin sulfate +relationship: RO:0004009 CHEBI:37397 ! has primary input chondroitin sulfate created_by: bf creation_date: 2010-03-12T10:25:34Z @@ -72692,10 +72272,10 @@ def: "The directed movement of water (H2O) from one side of an epithelium to the is_a: GO:0006833 ! water transport is_a: GO:0042045 ! epithelial fluid transport intersection_of: GO:0042044 ! fluid transport -intersection_of: has_primary_input CHEBI:15377 ! water -intersection_of: results_in_transport_across UBERON:0000483 ! epithelium -relationship: has_primary_input CHEBI:15377 ! water -relationship: results_in_transport_across UBERON:0000483 ! epithelium +intersection_of: RO:0002342 UBERON:0000483 ! results in transport across epithelium +intersection_of: RO:0004009 CHEBI:15377 ! has primary input water +relationship: RO:0002342 UBERON:0000483 ! results in transport across epithelium +relationship: RO:0004009 CHEBI:15377 ! has primary input water created_by: bf creation_date: 2010-03-18T10:55:38Z @@ -72709,10 +72289,10 @@ synonym: "carbon dioxide membrane transport" EXACT [] is_a: GO:0015670 ! carbon dioxide transport is_a: GO:0055085 ! transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:16526 ! carbon dioxide -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:16526 ! carbon dioxide -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:16526 ! has primary input carbon dioxide +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:16526 ! has primary input carbon dioxide created_by: bf creation_date: 2010-03-18T11:17:54Z @@ -72727,9 +72307,9 @@ xref: Reactome:R-HSA-1247645 "RHAG transports CO2 from cytosol to extracellular xref: Reactome:R-HSA-1247649 "AQP1 tetramer transports CO2 from cytosol to extracellular region" is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:16526 ! carbon dioxide -relationship: has_primary_input CHEBI:16526 ! carbon dioxide -relationship: part_of GO:0035378 ! carbon dioxide transmembrane transport +intersection_of: RO:0004009 CHEBI:16526 ! has primary input carbon dioxide +relationship: part_of GO:0035378 {source="GO_REF:0000090"} ! carbon dioxide transmembrane transport +relationship: RO:0004009 CHEBI:16526 ! has primary input carbon dioxide created_by: bf creation_date: 2010-03-18T11:19:38Z @@ -72741,8 +72321,8 @@ def: "Any process in which a protein is transported to, and/or maintained at the synonym: "protein localisation to synapse" EXACT [GOC:mah] is_a: GO:1902414 ! protein localization to cell junction intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0045202 ! synapse -relationship: has_target_end_location GO:0045202 ! synapse +intersection_of: RO:0002339 GO:0045202 ! has target end location synapse +relationship: RO:0002339 GO:0045202 ! has target end location synapse created_by: bf creation_date: 2010-03-29T10:58:53Z @@ -72756,10 +72336,10 @@ synonym: "acetate membrane transport" EXACT [] is_a: GO:0006846 ! acetate transport is_a: GO:1905039 ! carboxylic acid transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:30089 ! acetate -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:30089 ! acetate -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:30089 ! has primary input acetate +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:30089 ! has primary input acetate created_by: bf creation_date: 2010-04-08T10:59:01Z @@ -72773,10 +72353,10 @@ synonym: "phosphate ion membrane transport" EXACT [] is_a: GO:0006817 ! phosphate ion transport is_a: GO:0098661 ! inorganic anion transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:43474 ! hydrogenphosphate -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:43474 ! hydrogenphosphate -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:43474 ! has primary input hydrogenphosphate +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:43474 ! has primary input hydrogenphosphate created_by: bf creation_date: 2010-04-08T11:24:06Z @@ -72808,8 +72388,8 @@ synonym: "intracellular signaling pathway" RELATED [] synonym: "signal transmission via intracellular cascade" NARROW [] is_a: GO:0007165 ! signal transduction intersection_of: GO:0007165 ! signal transduction -intersection_of: occurs_in GO:0005622 ! intracellular anatomical structure -relationship: occurs_in GO:0005622 ! intracellular anatomical structure +intersection_of: BFO:0000066 GO:0005622 ! occurs in intracellular anatomical structure +relationship: BFO:0000066 GO:0005622 ! occurs in intracellular anatomical structure created_by: bf creation_date: 2010-05-14T01:14:37Z @@ -72821,8 +72401,8 @@ def: "Any process that modulates the frequency, rate or extent of chromatin bind subset: gocheck_do_not_annotate is_a: GO:0051098 ! regulation of binding intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003682 ! chromatin binding -relationship: regulates GO:0003682 ! chromatin binding +intersection_of: RO:0002211 GO:0003682 ! regulates (processual) chromatin binding +relationship: RO:0002211 GO:0003682 ! regulates (processual) chromatin binding created_by: bf creation_date: 2010-05-19T10:28:36Z @@ -72835,8 +72415,8 @@ subset: gocheck_do_not_annotate is_a: GO:0035561 ! regulation of chromatin binding is_a: GO:0051100 ! negative regulation of binding intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003682 ! chromatin binding -relationship: negatively_regulates GO:0003682 ! chromatin binding +intersection_of: RO:0002212 GO:0003682 ! negatively regulates chromatin binding +relationship: RO:0002212 GO:0003682 ! negatively regulates chromatin binding created_by: bf creation_date: 2010-05-19T10:29:06Z @@ -72849,8 +72429,8 @@ subset: gocheck_do_not_annotate is_a: GO:0035561 ! regulation of chromatin binding is_a: GO:0051099 ! positive regulation of binding intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003682 ! chromatin binding -relationship: positively_regulates GO:0003682 ! chromatin binding +intersection_of: RO:0002213 GO:0003682 ! positively regulates chromatin binding +relationship: RO:0002213 GO:0003682 ! positively regulates chromatin binding created_by: bf creation_date: 2010-05-19T10:29:41Z @@ -72917,8 +72497,8 @@ synonym: "establishment of protein localisation in extracellular region" EXACT [ synonym: "establishment of protein localization in extracellular region" EXACT [] is_a: GO:0045184 ! establishment of protein localization intersection_of: GO:0045184 ! establishment of protein localization -intersection_of: has_target_end_location GO:0005576 ! extracellular region -relationship: has_target_end_location GO:0005576 ! extracellular region +intersection_of: RO:0002339 GO:0005576 ! has target end location extracellular region +relationship: RO:0002339 GO:0005576 ! has target end location extracellular region created_by: bf creation_date: 2010-11-09T10:25:08Z @@ -72931,9 +72511,9 @@ synonym: "IHBD development" EXACT [PMID:20614624] synonym: "intrahepatic biliary duct development" EXACT [PMID:20614624] is_a: GO:0061009 ! common bile duct development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003704 ! intrahepatic bile duct +intersection_of: RO:0002296 UBERON:0003704 ! results in development of intrahepatic bile duct relationship: part_of GO:0001889 ! liver development -relationship: results_in_development_of UBERON:0003704 ! intrahepatic bile duct +relationship: RO:0002296 UBERON:0003704 ! results in development of intrahepatic bile duct created_by: bf creation_date: 2010-12-08T04:10:50Z @@ -72945,8 +72525,8 @@ def: "The directed movement of ceramides into, out of or within a cell, or betwe is_a: GO:0006869 ! lipid transport is_a: GO:0042886 ! amide transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:17761 ! ceramide -relationship: has_primary_input CHEBI:17761 ! ceramide +intersection_of: RO:0004009 CHEBI:17761 ! has primary input ceramide +relationship: RO:0004009 CHEBI:17761 ! has primary input ceramide created_by: bf creation_date: 2010-12-10T10:02:16Z @@ -72957,9 +72537,9 @@ namespace: biological_process def: "The progression of the cystic duct over time, from its formation to the mature structure. The cystic duct runs from the gallbladder to the common bile duct." [PMID:20614624] is_a: GO:0061009 ! common bile duct development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001152 ! cystic duct +intersection_of: RO:0002296 UBERON:0001152 ! results in development of cystic duct relationship: part_of GO:0061008 ! hepaticobiliary system development -relationship: results_in_development_of UBERON:0001152 ! cystic duct +relationship: RO:0002296 UBERON:0001152 ! results in development of cystic duct created_by: bf creation_date: 2010-12-10T01:24:28Z @@ -72984,8 +72564,8 @@ def: "Binding to a purine ribonucleoside triphosphate, a compound consisting of synonym: "purine NTP binding" BROAD [GOC:ebc] is_a: GO:1901265 ! nucleoside phosphate binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:26398 ! purine ribonucleoside triphosphate -relationship: has_primary_input CHEBI:26398 ! purine ribonucleoside triphosphate +intersection_of: RO:0004009 CHEBI:26398 ! has primary input purine ribonucleoside triphosphate +relationship: RO:0004009 CHEBI:26398 ! has primary input purine ribonucleoside triphosphate created_by: bf creation_date: 2011-01-14T02:46:42Z @@ -72997,9 +72577,9 @@ def: "The process in which a relatively unspecialized cell acquires specialized synonym: "intestinal smooth muscle cell differentiation" EXACT [CL:0002504] is_a: GO:0051145 ! smooth muscle cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002504 ! enteric smooth muscle cell +intersection_of: RO:0002315 CL:0002504 ! results in acquisition of features of enteric smooth muscle cell relationship: part_of GO:0048565 ! digestive tract development -relationship: results_in_acquisition_of_features_of CL:0002504 ! enteric smooth muscle cell +relationship: RO:0002315 CL:0002504 ! results in acquisition of features of enteric smooth muscle cell created_by: bf creation_date: 2011-01-21T02:58:58Z @@ -73010,9 +72590,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a neuromast hair cell over time, from its formation to the mature structure. A neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. Cell development does not include the steps involved in committing a cell to a specific fate." [CL:0000856] is_a: GO:0048666 ! neuron development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of CL:0000856 ! neuromast hair cell +intersection_of: RO:0002296 CL:0000856 ! results in development of neuromast hair cell relationship: part_of GO:0048886 ! neuromast hair cell differentiation -relationship: results_in_development_of CL:0000856 ! neuromast hair cell +relationship: RO:0002296 CL:0000856 ! results in development of neuromast hair cell created_by: bf creation_date: 2011-02-14T11:01:42Z @@ -73023,9 +72603,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of an anterior lateral line neuromast hair cell over time, from its formation to the mature structure. A neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. Cell development does not include the steps involved in committing a cell to a specific fate." [ISBN:0125296509, ISBN:0387968377] is_a: GO:0035675 ! neuromast hair cell development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:2000034 ! anterior lateral line neuromast hair cell +intersection_of: RO:0002296 CL:2000034 ! results in development of anterior lateral line neuromast hair cell relationship: part_of GO:0048903 ! anterior lateral line neuromast hair cell differentiation -relationship: results_in_development_of CL:2000034 ! anterior lateral line neuromast hair cell +relationship: RO:0002296 CL:2000034 ! results in development of anterior lateral line neuromast hair cell created_by: bf creation_date: 2011-02-14T11:03:57Z @@ -73036,9 +72616,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a posterior lateral line neuromast hair cell over time, from its formation to the mature structure. A neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. Cell development does not include the steps involved in committing a cell to a specific fate." [ISBN:0125296509] is_a: GO:0035675 ! neuromast hair cell development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:2000037 ! posterior lateral line neuromast hair cell +intersection_of: RO:0002296 CL:2000037 ! results in development of posterior lateral line neuromast hair cell relationship: part_of GO:0048923 ! posterior lateral line neuromast hair cell differentiation -relationship: results_in_development_of CL:2000037 ! posterior lateral line neuromast hair cell +relationship: RO:0002296 CL:2000037 ! results in development of posterior lateral line neuromast hair cell created_by: bf creation_date: 2011-02-14T11:04:57Z @@ -73049,9 +72629,9 @@ namespace: biological_process def: "The change in form (cell shape and size) that occurs when a neuromast hair cell progresses from its initial formation to its mature state. A neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface." [CL:0000856] is_a: GO:0048667 ! cell morphogenesis involved in neuron differentiation intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of CL:0000856 ! neuromast hair cell +intersection_of: RO:0002298 CL:0000856 ! results in morphogenesis of neuromast hair cell relationship: part_of GO:0035675 ! neuromast hair cell development -relationship: results_in_morphogenesis_of CL:0000856 ! neuromast hair cell +relationship: RO:0002298 CL:0000856 ! results in morphogenesis of neuromast hair cell created_by: bf creation_date: 2011-02-14T11:06:15Z @@ -73063,8 +72643,8 @@ def: "The directed movement of an astrocyte guided by a specific chemical concen is_a: GO:0043615 ! astrocyte cell migration is_a: GO:0060326 ! cell chemotaxis intersection_of: GO:0006935 ! chemotaxis -intersection_of: results_in_movement_of CL:0000127 ! astrocyte -relationship: results_in_movement_of CL:0000127 ! astrocyte +intersection_of: RO:0002565 CL:0000127 ! results in movement of astrocyte +relationship: RO:0002565 CL:0000127 ! results in movement of astrocyte created_by: bf creation_date: 2011-02-28T03:17:52Z @@ -73076,8 +72656,8 @@ def: "The orderly movement of a hematopoietic stem cell from one site to another synonym: "hemopoietic stem cell migration" EXACT [CL:0000037] is_a: GO:0016477 ! cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000037 ! hematopoietic stem cell -relationship: results_in_movement_of CL:0000037 ! hematopoietic stem cell +intersection_of: RO:0002565 CL:0000037 ! results in movement of hematopoietic stem cell +relationship: RO:0002565 CL:0000037 ! results in movement of hematopoietic stem cell created_by: bf creation_date: 2011-02-28T03:20:36Z @@ -73089,8 +72669,8 @@ def: "The process of regulating the proliferation and elimination of monocytes s is_a: GO:0001776 ! leukocyte homeostasis is_a: GO:0002262 ! myeloid cell homeostasis intersection_of: GO:0048872 ! homeostasis of number of cells -intersection_of: acts_on_population_of CL:0000576 ! monocyte -relationship: acts_on_population_of CL:0000576 ! monocyte +intersection_of: RO:0012003 CL:0000576 ! acts on population of monocyte +relationship: RO:0012003 CL:0000576 ! acts on population of monocyte created_by: bf creation_date: 2011-03-02T11:32:57Z @@ -73105,8 +72685,8 @@ is_a: GO:0006814 ! sodium ion transport is_a: GO:0098655 ! monoatomic cation transmembrane transport is_a: GO:0098662 ! inorganic cation transmembrane transport intersection_of: GO:0055085 ! transmembrane transport -intersection_of: has_primary_input CHEBI:29101 ! sodium(1+) -relationship: has_primary_input CHEBI:29101 ! sodium(1+) +intersection_of: RO:0004009 CHEBI:29101 ! has primary input sodium(1+) +relationship: RO:0004009 CHEBI:29101 ! has primary input sodium(1+) created_by: bf creation_date: 2011-03-10T02:52:36Z @@ -73117,8 +72697,8 @@ namespace: biological_process def: "A change in the morphology or behavior of a hepatic stellate cell resulting from exposure to a cytokine, chemokine, hormone, cellular ligand or soluble factor." [CL:0000632, GOC:bf] is_a: GO:0072537 ! fibroblast activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000632 ! hepatic stellate cell -relationship: has_primary_input CL:0000632 ! hepatic stellate cell +intersection_of: RO:0004009 CL:0000632 ! has primary input hepatic stellate cell +relationship: RO:0004009 CL:0000632 ! has primary input hepatic stellate cell created_by: bf creation_date: 2011-03-11T10:04:12Z @@ -73156,8 +72736,8 @@ namespace: biological_process def: "The directed movement of a natural killer cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis)." [CL:0000623, GOC:BHF] is_a: GO:0048247 ! lymphocyte chemotaxis intersection_of: GO:0006935 ! chemotaxis -intersection_of: results_in_movement_of CL:0000623 ! natural killer cell -relationship: results_in_movement_of CL:0000623 ! natural killer cell +intersection_of: RO:0002565 CL:0000623 ! results in movement of natural killer cell +relationship: RO:0002565 CL:0000623 ! results in movement of natural killer cell created_by: bf creation_date: 2011-03-17T02:40:10Z @@ -73168,8 +72748,8 @@ namespace: biological_process def: "The directed movement of a B cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis)." [CL:0000236, GOC:BHF] is_a: GO:0048247 ! lymphocyte chemotaxis intersection_of: GO:0006935 ! chemotaxis -intersection_of: results_in_movement_of CL:0000236 ! B cell -relationship: results_in_movement_of CL:0000236 ! B cell +intersection_of: RO:0002565 CL:0000236 ! results in movement of B cell +relationship: RO:0002565 CL:0000236 ! results in movement of B cell created_by: bf creation_date: 2011-03-23T10:30:33Z @@ -73180,9 +72760,9 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for the dorsal motor nucleus of the vagus nerve to attain its fully functional state." [GOC:dgh] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0071695 ! anatomical structure maturation -intersection_of: results_in_maturation_of UBERON:0002870 ! dorsal motor nucleus of vagus nerve +intersection_of: RO:0002299 UBERON:0002870 ! results in maturation of dorsal motor nucleus of vagus nerve relationship: part_of GO:0021744 ! dorsal motor nucleus of vagus nerve development -relationship: results_in_maturation_of UBERON:0002870 ! dorsal motor nucleus of vagus nerve +relationship: RO:0002299 UBERON:0002870 ! results in maturation of dorsal motor nucleus of vagus nerve created_by: bf creation_date: 2011-03-29T02:45:50Z @@ -73193,9 +72773,9 @@ namespace: biological_process def: "The process in which the dorsal motor nucleus of the vagus nerve is generated and organized. Morphogenesis pertains to the creation of form." [GOC:dgh] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002870 ! dorsal motor nucleus of vagus nerve +intersection_of: RO:0002298 UBERON:0002870 ! results in morphogenesis of dorsal motor nucleus of vagus nerve relationship: part_of GO:0021744 ! dorsal motor nucleus of vagus nerve development -relationship: results_in_morphogenesis_of UBERON:0002870 ! dorsal motor nucleus of vagus nerve +relationship: RO:0002298 UBERON:0002870 ! results in morphogenesis of dorsal motor nucleus of vagus nerve created_by: bf creation_date: 2011-03-29T02:47:18Z @@ -73206,9 +72786,9 @@ namespace: biological_process def: "The process that gives rise to the dorsal motor nucleus of the vagus nerve. This process pertains to the initial formation of a structure from unspecified parts." [GOC:dgh] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002870 ! dorsal motor nucleus of vagus nerve +intersection_of: RO:0002297 UBERON:0002870 ! results in formation of anatomical entity dorsal motor nucleus of vagus nerve relationship: part_of GO:0035762 ! dorsal motor nucleus of vagus nerve morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002870 ! dorsal motor nucleus of vagus nerve +relationship: RO:0002297 UBERON:0002870 ! results in formation of anatomical entity dorsal motor nucleus of vagus nerve created_by: bf creation_date: 2011-03-29T02:48:26Z @@ -73232,8 +72812,8 @@ def: "The directed movement of an endothelial cell guided by a specific chemical is_a: GO:0043542 ! endothelial cell migration is_a: GO:0060326 ! cell chemotaxis intersection_of: GO:0006935 ! chemotaxis -intersection_of: results_in_movement_of CL:0000115 ! endothelial cell -relationship: results_in_movement_of CL:0000115 ! endothelial cell +intersection_of: RO:0002565 CL:0000115 ! results in movement of endothelial cell +relationship: RO:0002565 CL:0000115 ! results in movement of endothelial cell created_by: bf creation_date: 2011-03-31T04:31:37Z @@ -73260,8 +72840,8 @@ synonym: "positive regulation of insulin secretion in response to glucose" EXACT is_a: GO:0032024 ! positive regulation of insulin secretion is_a: GO:0061178 ! regulation of insulin secretion involved in cellular response to glucose stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035773 ! insulin secretion involved in cellular response to glucose stimulus -relationship: positively_regulates GO:0035773 ! insulin secretion involved in cellular response to glucose stimulus +intersection_of: RO:0002213 GO:0035773 ! positively regulates insulin secretion involved in cellular response to glucose stimulus +relationship: RO:0002213 GO:0035773 ! positively regulates insulin secretion involved in cellular response to glucose stimulus created_by: bf creation_date: 2011-04-01T01:49:09Z @@ -73273,9 +72853,9 @@ def: "The process in which the anatomical structures of the pronephric glomerulu comment: This term is intended for annotation of fish and other organisms which contain a glomerulus as part of the pronephric nephron. It should not be used for annotation of Xenopus, which contains a pronephric glomus rather than a glomerulus. is_a: GO:0072102 ! glomerulus morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004739 ! pronephric glomerulus +intersection_of: RO:0002298 UBERON:0004739 ! results in morphogenesis of pronephric glomerulus relationship: part_of GO:0039021 ! pronephric glomerulus development -relationship: results_in_morphogenesis_of UBERON:0004739 ! pronephric glomerulus +relationship: RO:0002298 UBERON:0004739 ! results in morphogenesis of pronephric glomerulus created_by: bf creation_date: 2011-04-04T10:59:28Z @@ -73287,8 +72867,8 @@ def: "The progression of the pronephric proximal tubule over time, from its form is_a: GO:0039020 ! pronephric nephron tubule development is_a: GO:0072014 ! proximal tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006173 ! pronephric proximal tubule -relationship: results_in_development_of UBERON:0006173 ! pronephric proximal tubule +intersection_of: RO:0002296 UBERON:0006173 ! results in development of pronephric proximal tubule +relationship: RO:0002296 UBERON:0006173 ! results in development of pronephric proximal tubule created_by: bf creation_date: 2011-04-04T11:02:54Z @@ -73300,8 +72880,8 @@ def: "The process whose specific outcome is the progression of the pronephric di is_a: GO:0039020 ! pronephric nephron tubule development is_a: GO:0072017 ! distal tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006175 ! pronephric distal tubule -relationship: results_in_development_of UBERON:0006175 ! pronephric distal tubule +intersection_of: RO:0002296 UBERON:0006175 ! results in development of pronephric distal tubule +relationship: RO:0002296 UBERON:0006175 ! results in development of pronephric distal tubule created_by: bf creation_date: 2011-04-04T11:06:01Z @@ -73313,9 +72893,9 @@ def: "The process in which relatively unspecialized cells acquire specialized st is_a: GO:0039014 ! cell differentiation involved in pronephros development is_a: GO:0072160 ! nephron tubule epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000090 ! pronephric nephron tubule epithelial cell +intersection_of: RO:0002315 CL:1000090 ! results in acquisition of features of pronephric nephron tubule epithelial cell relationship: part_of GO:0039020 ! pronephric nephron tubule development -relationship: results_in_acquisition_of_features_of CL:1000090 ! pronephric nephron tubule epithelial cell +relationship: RO:0002315 CL:1000090 ! results in acquisition of features of pronephric nephron tubule epithelial cell created_by: bf creation_date: 2011-04-04T11:07:47Z @@ -73327,9 +72907,9 @@ def: "The process in which a relatively unspecialized cell acquires the speciali synonym: "angioblastic mesenchymal cell differentiation" EXACT [CL:0000566] is_a: GO:0048863 ! stem cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000566 ! angioblastic mesenchymal cell +intersection_of: RO:0002315 CL:0000566 ! results in acquisition of features of angioblastic mesenchymal cell relationship: part_of GO:0001568 ! blood vessel development -relationship: results_in_acquisition_of_features_of CL:0000566 ! angioblastic mesenchymal cell +relationship: RO:0002315 CL:0000566 ! results in acquisition of features of angioblastic mesenchymal cell created_by: bf creation_date: 2011-04-04T11:10:38Z @@ -73365,9 +72945,9 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for the ureter to attain its fully functional state. The ureter is a muscular tube that transports urine from the kidney to the urinary bladder or from the Malpighian tubule to the hindgut." [GOC:bf, GOC:mtg_kidney_jan10, GOC:yaf, PMID:17881463] is_a: GO:0048799 ! animal organ maturation intersection_of: GO:0071695 ! anatomical structure maturation -intersection_of: results_in_maturation_of UBERON:0000056 ! ureter +intersection_of: RO:0002299 UBERON:0000056 ! results in maturation of ureter relationship: part_of GO:0072189 ! ureter development -relationship: results_in_maturation_of UBERON:0000056 ! ureter +relationship: RO:0002299 UBERON:0000056 ! results in maturation of ureter created_by: bf creation_date: 2011-04-14T01:13:39Z @@ -73379,9 +72959,9 @@ def: "The process whose specific outcome is the progression of the adrenal corte synonym: "adrenal gland cortex development" EXACT [MA:0000118] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001235 ! adrenal cortex +intersection_of: RO:0002296 UBERON:0001235 ! results in development of adrenal cortex relationship: part_of GO:0030325 ! adrenal gland development -relationship: results_in_development_of UBERON:0001235 ! adrenal cortex +relationship: RO:0002296 UBERON:0001235 ! results in development of adrenal cortex created_by: bf creation_date: 2011-04-18T10:25:39Z @@ -73393,9 +72973,9 @@ def: "The process that gives rise to the adrenal cortex. This process pertains t synonym: "adrenal gland cortex formation" EXACT [MA:0000118] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001235 ! adrenal cortex +intersection_of: RO:0002297 UBERON:0001235 ! results in formation of anatomical entity adrenal cortex relationship: part_of GO:0035801 ! adrenal cortex development -relationship: results_in_formation_of_anatomical_entity UBERON:0001235 ! adrenal cortex +relationship: RO:0002297 UBERON:0001235 ! results in formation of anatomical entity adrenal cortex created_by: bf creation_date: 2011-04-18T10:26:49Z @@ -73424,8 +73004,8 @@ is_a: GO:0031012 ! extracellular matrix intersection_of: GO:0031012 ! extracellular matrix intersection_of: part_of CL:0000025 ! egg cell relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa relationship: part_of CL:0000025 ! egg cell +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa created_by: bf creation_date: 2011-04-19T02:07:23Z @@ -73449,8 +73029,8 @@ def: "The chemical reactions and pathways involving an indole alkaloid, an alkal synonym: "indole alkaloid metabolism" EXACT [GOC:bf] is_a: GO:0009820 ! alkaloid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:38958 ! indole alkaloid -relationship: has_primary_input_or_output CHEBI:38958 ! indole alkaloid +intersection_of: RO:0004007 CHEBI:38958 ! has primary input or output indole alkaloid +relationship: RO:0004007 CHEBI:38958 ! has primary input or output indole alkaloid created_by: bf creation_date: 2011-05-04T03:17:44Z @@ -73466,8 +73046,8 @@ synonym: "indole alkaloid synthesis" EXACT [GOC:bf] is_a: GO:0009821 ! alkaloid biosynthetic process is_a: GO:0035834 ! indole alkaloid metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:38958 ! indole alkaloid -relationship: has_primary_output CHEBI:38958 ! indole alkaloid +intersection_of: RO:0004008 CHEBI:38958 ! has primary output indole alkaloid +relationship: RO:0004008 CHEBI:38958 ! has primary output indole alkaloid created_by: bf creation_date: 2011-05-04T03:18:31Z @@ -73479,10 +73059,10 @@ def: "The process whose specific outcome is the progression of the cloaca over t synonym: "cloacal development" EXACT [GOC:bf] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000162 ! cloaca +intersection_of: RO:0002296 UBERON:0000162 ! results in development of cloaca relationship: part_of GO:0001655 ! urogenital system development relationship: part_of GO:0048546 ! digestive tract morphogenesis -relationship: results_in_development_of UBERON:0000162 ! cloaca +relationship: RO:0002296 UBERON:0000162 ! results in development of cloaca created_by: bf creation_date: 2011-05-06T01:54:35Z @@ -73495,9 +73075,9 @@ synonym: "photoreceptor cell outer segment organisation" EXACT [GOC:mah] synonym: "photoreceptor outer segment organization" EXACT [GOC:bf] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0001750 ! photoreceptor outer segment +intersection_of: RO:0002592 GO:0001750 ! results in organization of photoreceptor outer segment relationship: part_of GO:0042461 ! photoreceptor cell development -relationship: results_in_organization_of GO:0001750 ! photoreceptor outer segment +relationship: RO:0002592 GO:0001750 ! results in organization of photoreceptor outer segment created_by: bf creation_date: 2011-05-10T10:44:09Z @@ -73510,9 +73090,9 @@ synonym: "fallopian tube epithelium development" NARROW [GOC:yaf] is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004804 ! oviduct epithelium +intersection_of: RO:0002296 UBERON:0004804 ! results in development of oviduct epithelium relationship: part_of GO:0060066 ! oviduct development -relationship: results_in_development_of UBERON:0004804 ! oviduct epithelium +relationship: RO:0002296 UBERON:0004804 ! results in development of oviduct epithelium created_by: bf creation_date: 2011-05-10T10:53:05Z @@ -73524,9 +73104,9 @@ def: "The progression of an epithelium of the uterus over time from its initial synonym: "uterus epithelial development" EXACT [GOC:yaf] is_a: GO:0035846 ! oviduct epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006955 ! uterine epithelium +intersection_of: RO:0002296 UBERON:0006955 ! results in development of uterine epithelium relationship: part_of GO:0060065 ! uterus development -relationship: results_in_development_of UBERON:0006955 ! uterine epithelium +relationship: RO:0002296 UBERON:0006955 ! results in development of uterine epithelium created_by: bf creation_date: 2011-05-10T10:57:45Z @@ -73539,9 +73119,9 @@ synonym: "fallopian tube morphogenesis" NARROW [GOC:yaf] is_a: GO:0009887 ! animal organ morphogenesis is_a: GO:0035239 ! tube morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000993 ! oviduct +intersection_of: RO:0002298 UBERON:0000993 ! results in morphogenesis of oviduct relationship: part_of GO:0060066 ! oviduct development -relationship: results_in_morphogenesis_of UBERON:0000993 ! oviduct +relationship: RO:0002298 UBERON:0000993 ! results in morphogenesis of oviduct created_by: bf creation_date: 2011-05-10T11:01:20Z @@ -73566,12 +73146,41 @@ def: "The process whose specific outcome is the progression of a megakaryocyte c synonym: "megakaryocyte cell development" EXACT [GOC:bf] is_a: GO:0061515 ! myeloid cell development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of CL:0000556 ! megakaryocyte +intersection_of: RO:0002296 CL:0000556 ! results in development of megakaryocyte relationship: part_of GO:0030219 ! megakaryocyte differentiation -relationship: results_in_development_of CL:0000556 ! megakaryocyte +relationship: RO:0002296 CL:0000556 ! results in development of megakaryocyte created_by: bf creation_date: 2011-05-13T01:28:06Z +[Term] +id: GO:0035864 +name: response to potassium ion +namespace: biological_process +def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a potassium ion stimulus." [GOC:yaf] +synonym: "response to K+ ion" EXACT [GOC:bf] +synonym: "response to potassium" EXACT [GOC:bf] +is_a: GO:0010038 ! response to metal ion +intersection_of: GO:0050896 ! response to stimulus +intersection_of: RO:0004009 CHEBI:29103 ! has primary input potassium(1+) +relationship: RO:0004009 CHEBI:29103 ! has primary input potassium(1+) +created_by: bf +creation_date: 2011-05-25T02:58:45Z + +[Term] +id: GO:0035865 +name: cellular response to potassium ion +namespace: biological_process +def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a potassium ion stimulus." [GOC:yaf] +synonym: "cellular response to K+ ion" EXACT [GOC:bf] +synonym: "cellular response to potassium" EXACT [GOC:bf] +is_a: GO:0035864 ! response to potassium ion +is_a: GO:0071248 ! cellular response to metal ion +intersection_of: GO:0070887 ! cellular response to chemical stimulus +intersection_of: RO:0004009 CHEBI:29103 ! has primary input potassium(1+) +relationship: RO:0004009 CHEBI:29103 ! has primary input potassium(1+) +created_by: bf +creation_date: 2011-05-25T02:59:11Z + [Term] id: GO:0035869 name: ciliary transition zone @@ -73581,7 +73190,7 @@ comment: Depending on the species, this region may have a distinct geometrically synonym: "cilial transition zone" EXACT [] synonym: "cilium transition zone" EXACT [] synonym: "connecting cilium" RELATED [] -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of GO:0005929 ! cilium created_by: bf creation_date: 2011-05-25T03:09:58Z @@ -73593,9 +73202,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a nail over time, from its formation to the mature structure. A nail is a horn-like envelope covering the outer end of a finger or toe, and consists of the nail plate, the nail matrix and the nail bed below it, and the grooves surrounding it." [GOC:bf, ISBN:0323025781, UBERON:0001705, Wikipedia:Nail_(anatomy)] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001705 ! nail +intersection_of: RO:0002296 UBERON:0001705 ! results in development of nail relationship: part_of GO:0060173 ! limb development -relationship: results_in_development_of UBERON:0001705 ! nail +relationship: RO:0002296 UBERON:0001705 ! results in development of nail created_by: bf creation_date: 2011-05-31T02:30:34Z @@ -73607,9 +73216,9 @@ def: "The process in which a relatively unspecialized cell acquires specialized synonym: "amacrine neuron differentiation" EXACT [CL:0000561] is_a: GO:0030182 ! neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000561 ! amacrine cell +intersection_of: RO:0002315 CL:0000561 ! results in acquisition of features of amacrine cell relationship: part_of GO:0003407 ! neural retina development -relationship: results_in_acquisition_of_features_of CL:0000561 ! amacrine cell +relationship: RO:0002315 CL:0000561 ! results in acquisition of features of amacrine cell created_by: bf creation_date: 2011-06-06T11:32:50Z @@ -73620,8 +73229,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of an enteroendocrine cell. Enteroendocrine cells are hormonally active epithelial cells in the gut that constitute the diffuse neuroendocrine system." [CL:0000164, GOC:bf] is_a: GO:0002067 ! glandular epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000164 ! enteroendocrine cell -relationship: results_in_acquisition_of_features_of CL:0000164 ! enteroendocrine cell +intersection_of: RO:0002315 CL:0000164 ! results in acquisition of features of enteroendocrine cell +relationship: RO:0002315 CL:0000164 ! results in acquisition of features of enteroendocrine cell created_by: bf creation_date: 2011-06-06T11:48:51Z @@ -73634,9 +73243,9 @@ synonym: "vascular smooth muscle cell differentiation" EXACT [] synonym: "VSMC differentiation" EXACT [PMID:16151017] is_a: GO:0051145 ! smooth muscle cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000359 ! vascular associated smooth muscle cell +intersection_of: RO:0002315 CL:0000359 ! results in acquisition of features of vascular associated smooth muscle cell relationship: part_of GO:0001944 ! vasculature development -relationship: results_in_acquisition_of_features_of CL:0000359 ! vascular associated smooth muscle cell +relationship: RO:0002315 CL:0000359 ! results in acquisition of features of vascular associated smooth muscle cell created_by: bf creation_date: 2011-06-08T11:23:52Z @@ -73647,8 +73256,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a smooth muscle cell surrounding the aorta." [GOC:sl] is_a: GO:0035886 ! vascular associated smooth muscle cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002539 ! aortic smooth muscle cell -relationship: results_in_acquisition_of_features_of CL:0002539 ! aortic smooth muscle cell +intersection_of: RO:0002315 CL:0002539 ! results in acquisition of features of aortic smooth muscle cell +relationship: RO:0002315 CL:0002539 ! results in acquisition of features of aortic smooth muscle cell created_by: bf creation_date: 2011-06-08T11:34:26Z @@ -73671,8 +73280,8 @@ namespace: biological_process def: "The progression of the aorta over time, from its initial formation to the mature structure. An aorta is an artery that carries blood from the heart to other parts of the body." [GOC:bf, GOC:dgh, MA:0000062, UBERON:0000947, Wikipedia:Aorta] is_a: GO:0060840 ! artery development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000947 ! aorta -relationship: results_in_development_of UBERON:0000947 ! aorta +intersection_of: RO:0002296 UBERON:0000947 ! results in development of aorta +relationship: RO:0002296 UBERON:0000947 ! results in development of aorta created_by: bf creation_date: 2011-06-24T11:00:07Z @@ -73683,9 +73292,9 @@ namespace: biological_process def: "The progression of the ascending aorta over time, from its initial formation to the mature structure. The ascending aorta is the portion of the aorta in a two-pass circulatory system that lies between the heart and the arch of aorta. In a two-pass circulatory system blood passes twice through the heart to supply the body once." [GOC:bf, GOC:dgh, MA:0002570, UBERON:0001496, Wikipedia:Ascending_aorta] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001496 ! ascending aorta +intersection_of: RO:0002296 UBERON:0001496 ! results in development of ascending aorta relationship: part_of GO:0035904 ! aorta development -relationship: results_in_development_of UBERON:0001496 ! ascending aorta +relationship: RO:0002296 UBERON:0001496 ! results in development of ascending aorta created_by: bf creation_date: 2011-06-24T11:02:01Z @@ -73696,9 +73305,9 @@ namespace: biological_process def: "The progression of the descending aorta over time, from its initial formation to the mature structure. The descending aorta is the portion of the aorta in a two-pass circulatory system from the arch of aorta to the point where it divides into the common iliac arteries. In a two-pass circulatory system blood passes twice through the heart to supply the body once." [GOC:bf, GOC:dgh, MA:0002571, UBERON:0001514, Wikipedia:Descending_aorta] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001514 ! descending aorta +intersection_of: RO:0002296 UBERON:0001514 ! results in development of descending aorta relationship: part_of GO:0035904 ! aorta development -relationship: results_in_development_of UBERON:0001514 ! descending aorta +relationship: RO:0002296 UBERON:0001514 ! results in development of descending aorta created_by: bf creation_date: 2011-06-24T11:05:22Z @@ -73709,8 +73318,8 @@ namespace: biological_process def: "The progression of the dorsal aorta over time, from its initial formation to the mature structure. The dorsal aorta is a blood vessel in a single-pass circulatory system that carries oxygenated blood from the gills to the rest of the body. In a single-pass circulatory system blood passes once through the heart to supply the body once." [GOC:bf, GOC:dgh, UBERON:0005805, Wikipedia:Aorta, ZFA:0000014] is_a: GO:0035904 ! aorta development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005805 ! dorsal aorta -relationship: results_in_development_of UBERON:0005805 ! dorsal aorta +intersection_of: RO:0002296 UBERON:0005805 ! results in development of dorsal aorta +relationship: RO:0002296 UBERON:0005805 ! results in development of dorsal aorta created_by: bf creation_date: 2011-06-24T11:07:01Z @@ -73721,8 +73330,8 @@ namespace: biological_process def: "The progression of the ventral aorta over time, from its initial formation to the mature structure. The ventral aorta is a blood vessel in a single-pass circulatory system that carries de-oxygenated blood from the heart to the gills. In a single-pass circulatory system blood passes once through the heart to supply the body once." [GOC:bf, GOC:dgh, UBERON:0003085, Wikipedia:Aorta, ZFA:0000604] is_a: GO:0035904 ! aorta development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003085 ! ventral aorta -relationship: results_in_development_of UBERON:0003085 ! ventral aorta +intersection_of: RO:0002296 UBERON:0003085 ! results in development of ventral aorta +relationship: RO:0002296 UBERON:0003085 ! results in development of ventral aorta created_by: bf creation_date: 2011-06-24T11:08:49Z @@ -73733,9 +73342,9 @@ namespace: biological_process def: "The process in which the anatomical structures of an aorta are generated and organized. An aorta is an artery that carries blood from the heart to other parts of the body." [GOC:bf, GOC:dgh, MA:0000062, UBERON:0000947, Wikipedia:Aorta] is_a: GO:0048844 ! artery morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000947 ! aorta +intersection_of: RO:0002298 UBERON:0000947 ! results in morphogenesis of aorta relationship: part_of GO:0035904 ! aorta development -relationship: results_in_morphogenesis_of UBERON:0000947 ! aorta +relationship: RO:0002298 UBERON:0000947 ! results in morphogenesis of aorta created_by: bf creation_date: 2011-06-24T11:11:11Z @@ -73746,10 +73355,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the ascending aorta are generated and organized. The ascending aorta is the portion of the aorta in a two-pass circulatory system that lies between the heart and the arch of aorta. In a two-pass circulatory system blood passes twice through the heart to supply the body once." [GOC:bf, GOC:dgh, MA:0002570, UBERON:0001496, Wikipedia:Ascending_aorta] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001496 ! ascending aorta +intersection_of: RO:0002298 UBERON:0001496 ! results in morphogenesis of ascending aorta relationship: part_of GO:0035905 ! ascending aorta development relationship: part_of GO:0035909 ! aorta morphogenesis -relationship: results_in_morphogenesis_of UBERON:0001496 ! ascending aorta +relationship: RO:0002298 UBERON:0001496 ! results in morphogenesis of ascending aorta created_by: bf creation_date: 2011-06-24T11:14:52Z @@ -73760,10 +73369,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the descending aorta are generated and organized. The descending aorta is the portion of the aorta in a two-pass circulatory system from the arch of aorta to the point where it divides into the common iliac arteries. In a two-pass circulatory system blood passes twice through the heart to supply the body once." [GOC:bf, GOC:dgh, MA:0002571, UBERON:0001514, Wikipedia:Descending_aorta] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001514 ! descending aorta +intersection_of: RO:0002298 UBERON:0001514 ! results in morphogenesis of descending aorta relationship: part_of GO:0035906 ! descending aorta development relationship: part_of GO:0035909 ! aorta morphogenesis -relationship: results_in_morphogenesis_of UBERON:0001514 ! descending aorta +relationship: RO:0002298 UBERON:0001514 ! results in morphogenesis of descending aorta created_by: bf creation_date: 2011-06-24T11:19:24Z @@ -73774,9 +73383,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the dorsal aorta are generated and organized. The dorsal aorta is a blood vessel in a single-pass circulatory system that carries oxygenated blood from the gills to the rest of the body. In a single-pass circulatory system blood passes once through the heart to supply the body once." [GOC:bf, GOC:dgh, UBERON:0005805, Wikipedia:Aorta, ZFA:0000014] is_a: GO:0035909 ! aorta morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005805 ! dorsal aorta +intersection_of: RO:0002298 UBERON:0005805 ! results in morphogenesis of dorsal aorta relationship: part_of GO:0035907 ! dorsal aorta development -relationship: results_in_morphogenesis_of UBERON:0005805 ! dorsal aorta +relationship: RO:0002298 UBERON:0005805 ! results in morphogenesis of dorsal aorta created_by: bf creation_date: 2011-06-24T11:22:14Z @@ -73787,9 +73396,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the ventral aorta are generated and organized. The ventral aorta is a blood vessel in a single-pass circulatory system that carries de-oxygenated blood from the heart to the gills. In a single-pass circulatory system blood passes once through the heart to supply the body once." [GOC:bf, GOC:dgh, UBERON:0003085, Wikipedia:Aorta, ZFA:0000604] is_a: GO:0035909 ! aorta morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003085 ! ventral aorta +intersection_of: RO:0002298 UBERON:0003085 ! results in morphogenesis of ventral aorta relationship: part_of GO:0035908 ! ventral aorta development -relationship: results_in_morphogenesis_of UBERON:0003085 ! ventral aorta +relationship: RO:0002298 UBERON:0003085 ! results in morphogenesis of ventral aorta created_by: bf creation_date: 2011-06-24T11:24:36Z @@ -73800,9 +73409,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a skeletal muscle cell, a somatic cell located in skeletal muscle." [CL:0000188, GOC:BHF, GOC:vk] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000188 ! cell of skeletal muscle +intersection_of: RO:0002315 CL:0000188 ! results in acquisition of features of cell of skeletal muscle relationship: part_of GO:0007519 ! skeletal muscle tissue development -relationship: results_in_acquisition_of_features_of CL:0000188 ! cell of skeletal muscle +relationship: RO:0002315 CL:0000188 ! results in acquisition of features of cell of skeletal muscle created_by: bf creation_date: 2011-06-24T02:36:19Z @@ -73814,8 +73423,8 @@ def: "The regulated release of any steroid that acts as a hormone into the circu is_a: GO:0060986 ! endocrine hormone secretion is_a: GO:0140353 ! lipid export from cell intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:26764 ! steroid hormone -relationship: has_primary_input CHEBI:26764 ! steroid hormone +intersection_of: RO:0004009 CHEBI:26764 ! has primary input steroid hormone +relationship: RO:0004009 CHEBI:26764 ! has primary input steroid hormone created_by: bf creation_date: 2011-07-20T01:01:00Z @@ -73827,8 +73436,8 @@ def: "The regulated release of any corticosteroid hormone into the circulatory s synonym: "corticosteroid secretion" BROAD [GOC:bf] is_a: GO:0035929 ! steroid hormone secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:36699 ! corticosteroid hormone -relationship: has_primary_input CHEBI:36699 ! corticosteroid hormone +intersection_of: RO:0004009 CHEBI:36699 ! has primary input corticosteroid hormone +relationship: RO:0004009 CHEBI:36699 ! has primary input corticosteroid hormone created_by: bf creation_date: 2011-07-20T01:03:22Z @@ -73839,8 +73448,8 @@ namespace: biological_process def: "The regulated release of any mineralocorticoid into the circulatory system. Mineralocorticoids are a class of steroid hormones that regulate water and electrolyte metabolism." [GOC:sl] is_a: GO:0035930 ! corticosteroid hormone secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:25354 ! mineralocorticoid -relationship: has_primary_input CHEBI:25354 ! mineralocorticoid +intersection_of: RO:0004009 CHEBI:25354 ! has primary input mineralocorticoid +relationship: RO:0004009 CHEBI:25354 ! has primary input mineralocorticoid created_by: bf creation_date: 2011-07-20T01:04:59Z @@ -73852,8 +73461,8 @@ def: "The regulated release of aldosterone into the circulatory system. Aldoster is_a: GO:0015850 ! organic hydroxy compound transport is_a: GO:0035931 ! mineralocorticoid secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:27584 ! aldosterone -relationship: has_primary_input CHEBI:27584 ! aldosterone +intersection_of: RO:0004009 CHEBI:27584 ! has primary input aldosterone +relationship: RO:0004009 CHEBI:27584 ! has primary input aldosterone created_by: bf creation_date: 2011-07-20T01:06:24Z @@ -73864,8 +73473,8 @@ namespace: biological_process def: "The regulated release of any glucocorticoid hormone into the circulatory system. Glucocorticoids are a class of steroid hormones that regulate a variety of physiological processes, in particular control of the concentration of glucose in blood." [GOC:sl] is_a: GO:0035930 ! corticosteroid hormone secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:24261 ! glucocorticoid -relationship: has_primary_input CHEBI:24261 ! glucocorticoid +intersection_of: RO:0004009 CHEBI:24261 ! has primary input glucocorticoid +relationship: RO:0004009 CHEBI:24261 ! has primary input glucocorticoid created_by: bf creation_date: 2011-07-20T01:08:37Z @@ -73887,8 +73496,8 @@ is_a: GO:0015850 ! organic hydroxy compound transport is_a: GO:0046879 ! hormone secretion is_a: GO:0140353 ! lipid export from cell intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:17347 ! testosterone -relationship: has_primary_input CHEBI:17347 ! testosterone +intersection_of: RO:0004009 CHEBI:17347 ! has primary input testosterone +relationship: RO:0004009 CHEBI:17347 ! has primary input testosterone created_by: bf creation_date: 2011-07-20T01:13:13Z @@ -73899,8 +73508,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a tongue muscle cell." [CL:0002673, GOC:yaf, PMID:3393851] is_a: GO:0098528 ! skeletal muscle fiber differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002673 ! tongue muscle cell -relationship: results_in_acquisition_of_features_of CL:0002673 ! tongue muscle cell +intersection_of: RO:0002315 CL:0002673 ! results in acquisition of features of tongue muscle cell +relationship: RO:0002315 CL:0002673 ! results in acquisition of features of tongue muscle cell created_by: bf creation_date: 2011-08-22T01:35:16Z @@ -73912,9 +73521,9 @@ def: "The process in which a relatively unspecialized cell acquires the speciali synonym: "endoderm cell differentiation" EXACT [CL:0000223] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000223 ! endodermal cell +intersection_of: RO:0002315 CL:0000223 ! results in acquisition of features of endodermal cell relationship: part_of GO:0001706 ! endoderm formation -relationship: results_in_acquisition_of_features_of CL:0000223 ! endodermal cell +relationship: RO:0002315 CL:0000223 ! results in acquisition of features of endodermal cell created_by: bf creation_date: 2011-08-25T04:50:36Z @@ -73926,8 +73535,8 @@ def: "The process whose specific outcome is the progression of a tendon over tim synonym: "sinew development" RELATED [UBERON:0000043] is_a: GO:0061448 ! connective tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000043 ! tendon -relationship: results_in_development_of UBERON:0000043 ! tendon +intersection_of: RO:0002296 UBERON:0000043 ! results in development of tendon +relationship: RO:0002296 UBERON:0000043 ! results in development of tendon created_by: bf creation_date: 2011-08-26T04:14:30Z @@ -73940,9 +73549,9 @@ synonym: "muscle attachment cell differentiation" EXACT [CL:0000388] synonym: "tenocyte differentiation" RELATED [CL:0000388] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000388 ! tendon cell +intersection_of: RO:0002315 CL:0000388 ! results in acquisition of features of tendon cell relationship: part_of GO:0035992 ! tendon formation -relationship: results_in_acquisition_of_features_of CL:0000388 ! tendon cell +relationship: RO:0002315 CL:0000388 ! results in acquisition of features of tendon cell created_by: bf creation_date: 2011-08-26T04:16:06Z @@ -73953,9 +73562,9 @@ namespace: biological_process def: "The process that gives rise to a tendon. This process pertains to the initial formation of a tendon from unspecified parts." [GOC:yaf, PMID:17567668, UBERON:0000043] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000043 ! tendon +intersection_of: RO:0002297 UBERON:0000043 ! results in formation of anatomical entity tendon relationship: part_of GO:0035989 ! tendon development -relationship: results_in_formation_of_anatomical_entity UBERON:0000043 ! tendon +relationship: RO:0002297 UBERON:0000043 ! results in formation of anatomical entity tendon created_by: bf creation_date: 2011-08-30T01:35:10Z @@ -73966,10 +73575,10 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the deltoid tuberosity over time, from its formation to the mature structure. The deltoid tuberosity is the region on the shaft of the humerus to which the deltoid muscle attaches. The deltoid tuberosity develops through endochondral ossification in a two-phase process; an initiating tendon-dependent phase, and a muscle-dependent growth phase." [GOC:yaf, PMID:17567668, UBERON:0002498, Wikipedia:Deltoid_tuberosity] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002498 ! deltopectoral crest +intersection_of: RO:0002296 UBERON:0002498 ! results in development of deltopectoral crest relationship: part_of GO:0060173 ! limb development relationship: part_of GO:0060348 ! bone development -relationship: results_in_development_of UBERON:0002498 ! deltopectoral crest +relationship: RO:0002296 UBERON:0002498 ! results in development of deltopectoral crest created_by: bf creation_date: 2011-08-30T01:46:53Z @@ -73982,9 +73591,9 @@ synonym: "knee morphogenesis" NARROW [GOC:bf] synonym: "leg joint morphogenesis" NARROW [GOC:bf] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003657 ! limb joint +intersection_of: RO:0002298 UBERON:0003657 ! results in morphogenesis of limb joint relationship: part_of GO:0035108 ! limb morphogenesis -relationship: results_in_morphogenesis_of UBERON:0003657 ! limb joint +relationship: RO:0002298 UBERON:0003657 ! results in morphogenesis of limb joint created_by: bf creation_date: 2011-10-13T04:52:59Z @@ -73997,9 +73606,9 @@ synonym: "osteoclast cell development" EXACT [GOC:bf] is_a: GO:0061515 ! myeloid cell development is_a: GO:0098751 ! bone cell development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:0000092 ! osteoclast +intersection_of: RO:0002296 CL:0000092 ! results in development of osteoclast relationship: part_of GO:0030316 ! osteoclast differentiation -relationship: results_in_development_of CL:0000092 ! osteoclast +relationship: RO:0002296 CL:0000092 ! results in development of osteoclast created_by: bf creation_date: 2011-11-02T05:20:35Z @@ -74011,7 +73620,9 @@ def: "A large plasma membrane-lined circular pore that perforates the flattened synonym: "GEnC fenestration" EXACT [PMID:19129259] synonym: "glomerular endothelial cell fenestration" EXACT [PMID:19129259] is_a: GO:0046930 ! pore complex -relationship: never_in_taxon NCBITaxon_Union:0000023 +relationship: never_in_taxon NCBITaxon:2 ! Bacteria +relationship: never_in_taxon NCBITaxon:2157 ! Archaea +relationship: never_in_taxon NCBITaxon:4751 ! Fungi created_by: bf creation_date: 2011-12-12T10:53:24Z @@ -74061,9 +73672,9 @@ namespace: biological_process def: "The multiplication or reproduction of germ cells, reproductive cells in multicellular organisms, resulting in the expansion of a cell population." [CL:0000586, GOC:kmv] is_a: GO:0008283 ! cell population proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000586 ! germ cell -relationship: acts_on_population_of CL:0000586 ! germ cell +intersection_of: RO:0012003 CL:0000586 ! acts on population of germ cell relationship: part_of GO:0007276 ! gamete generation +relationship: RO:0012003 CL:0000586 ! acts on population of germ cell created_by: bf creation_date: 2012-01-17T04:06:27Z @@ -74089,8 +73700,8 @@ namespace: biological_process def: "The process by which an organism or tissue maintains a population of female germ-line stem cells." [GOC:sart] is_a: GO:0030718 ! germ-line stem cell population maintenance intersection_of: GO:0098727 ! maintenance of cell number -intersection_of: acts_on_population_of CL:0000022 ! female germ line stem cell -relationship: acts_on_population_of CL:0000022 ! female germ line stem cell +intersection_of: RO:0012003 CL:0000022 ! acts on population of female germ line stem cell +relationship: RO:0012003 CL:0000022 ! acts on population of female germ line stem cell created_by: bf creation_date: 2012-01-26T01:58:10Z @@ -74101,8 +73712,8 @@ namespace: biological_process def: "The orderly movement of a Schwann cell from one site to another. A Schwann cell is a glial cell that ensheathes axons of neuron in the peripheral nervous system and is necessary for their maintenance and function." [CL:0002573, PMID:20335460] is_a: GO:0008347 ! glial cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0002573 ! Schwann cell -relationship: results_in_movement_of CL:0002573 ! Schwann cell +intersection_of: RO:0002565 CL:0002573 ! results in movement of Schwann cell +relationship: RO:0002565 CL:0002573 ! results in movement of Schwann cell created_by: bf creation_date: 2012-03-06T10:44:39Z @@ -74114,8 +73725,8 @@ def: "The process of regulating the proliferation and elimination of dendritic c synonym: "DC homeostasis" RELATED [PMID:19176316] is_a: GO:0001776 ! leukocyte homeostasis intersection_of: GO:0048872 ! homeostasis of number of cells -intersection_of: acts_on_population_of CL:0000451 ! dendritic cell -relationship: acts_on_population_of CL:0000451 ! dendritic cell +intersection_of: RO:0012003 CL:0000451 ! acts on population of dendritic cell +relationship: RO:0012003 CL:0000451 ! acts on population of dendritic cell created_by: bf creation_date: 2012-03-12T11:05:36Z @@ -74146,8 +73757,8 @@ namespace: biological_process def: "The regulated release of calcitonin, a peptide hormone that participates in calcium and phosphorus metabolism, from a cell." [GOC:cjm] is_a: GO:0030072 ! peptide hormone secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:3306 ! calcitonin -relationship: has_primary_input CHEBI:3306 ! calcitonin +intersection_of: RO:0004009 CHEBI:3306 ! has primary input calcitonin +relationship: RO:0004009 CHEBI:3306 ! has primary input calcitonin created_by: bf creation_date: 2012-03-26T01:30:32Z @@ -74159,9 +73770,9 @@ def: "A developmental process, independent of morphogenetic (shape) change, that synonym: "chondroclast maturation" RELATED [CL:0000092] is_a: GO:0048469 ! cell maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of CL:0000092 ! osteoclast +intersection_of: RO:0002299 CL:0000092 ! results in maturation of osteoclast relationship: part_of GO:0036035 ! osteoclast development -relationship: results_in_maturation_of CL:0000092 ! osteoclast +relationship: RO:0002299 CL:0000092 ! results in maturation of osteoclast created_by: bf creation_date: 2012-03-29T02:04:00Z @@ -74221,8 +73832,8 @@ namespace: biological_process def: "The change in morphology and behavior of a granulocyte resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor." [CL:0000094, GOC:nhn] is_a: GO:0002274 ! myeloid leukocyte activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000094 ! granulocyte -relationship: has_primary_input CL:0000094 ! granulocyte +intersection_of: RO:0004009 CL:0000094 ! has primary input granulocyte +relationship: RO:0004009 CL:0000094 ! has primary input granulocyte created_by: bf creation_date: 2012-05-11T10:57:48Z @@ -74244,9 +73855,9 @@ namespace: biological_process def: "The progression of the atrioventricular canal over time, from its formation to the mature structure. The atrioventricular canal is the part of the heart connecting the atrium to the cardiac ventricle." [GOC:BHF, GOC:gr, PMID:14701881, UBERON:0002087, ZFA:0001315] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002087 ! atrioventricular canal +intersection_of: RO:0002296 UBERON:0002087 ! results in development of atrioventricular canal relationship: part_of GO:0007507 ! heart development -relationship: results_in_development_of UBERON:0002087 ! atrioventricular canal +relationship: RO:0002296 UBERON:0002087 ! results in development of atrioventricular canal created_by: bf creation_date: 2012-08-08T09:55:37Z @@ -74257,9 +73868,9 @@ namespace: biological_process def: "The process in which the anatomical structures of lymph vessels are generated and organized. The lymph vessel is the vasculature carrying lymph." [GOC:BHF, GOC:gr, PMID:18093989] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001473 ! lymphatic vessel +intersection_of: RO:0002298 UBERON:0001473 ! results in morphogenesis of lymphatic vessel relationship: part_of GO:0001945 ! lymph vessel development -relationship: results_in_morphogenesis_of UBERON:0001473 ! lymphatic vessel +relationship: RO:0002298 UBERON:0001473 ! results in morphogenesis of lymphatic vessel created_by: bf creation_date: 2012-08-08T10:08:47Z @@ -74270,9 +73881,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the umbilical cord are generated and organized. The umbilical cord is an organ or embryonic origin consisting of the 2 umbilical arteries and the one umbilical vein. The umbilical cord connects the cardiovascular system of the fetus to the mother via the placenta." [GOC:BHF, GOC:gr, PMID:15107403] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002331 ! umbilical cord +intersection_of: RO:0002298 UBERON:0002331 ! results in morphogenesis of umbilical cord relationship: part_of GO:0061027 ! umbilical cord development -relationship: results_in_morphogenesis_of UBERON:0002331 ! umbilical cord +relationship: RO:0002298 UBERON:0002331 ! results in morphogenesis of umbilical cord created_by: bf creation_date: 2012-08-08T10:12:11Z @@ -74283,8 +73894,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of an ameloblast, a cylindrical epithelial cell in the innermost layer of the enamel organ." [CL:0000059] is_a: GO:0002065 ! columnar/cuboidal epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000059 ! ameloblast -relationship: results_in_acquisition_of_features_of CL:0000059 ! ameloblast +intersection_of: RO:0002315 CL:0000059 ! results in acquisition of features of ameloblast +relationship: RO:0002315 CL:0000059 ! results in acquisition of features of ameloblast created_by: bf creation_date: 2012-08-08T13:49:15Z @@ -74295,8 +73906,8 @@ namespace: biological_process def: "Any biological process involved in the maintenance of the steady-state number of hepatocytes within a population of cells. Hepatocytes are specialized epithelial cells of the liver that are organized into interconnected plates called lobules." [CL:0000182, GOC:nhn, PMID:19878874] is_a: GO:0048872 ! homeostasis of number of cells intersection_of: GO:0048872 ! homeostasis of number of cells -intersection_of: acts_on_population_of CL:0000182 ! hepatocyte -relationship: acts_on_population_of CL:0000182 ! hepatocyte +intersection_of: RO:0012003 CL:0000182 ! acts on population of hepatocyte +relationship: RO:0012003 CL:0000182 ! acts on population of hepatocyte created_by: bf creation_date: 2012-09-05T10:17:07Z @@ -74307,8 +73918,8 @@ namespace: biological_process def: "Any biological process involved in the maintenance of the steady-state number of epidermal stem cells within a population of cells." [CL:1000428, GOC:nhn, PMID:17666529] is_a: GO:0048872 ! homeostasis of number of cells intersection_of: GO:0048872 ! homeostasis of number of cells -intersection_of: acts_on_population_of CL:1000428 ! stem cell of epidermis -relationship: acts_on_population_of CL:1000428 ! stem cell of epidermis +intersection_of: RO:0012003 CL:1000428 ! acts on population of stem cell of epidermis +relationship: RO:0012003 CL:1000428 ! acts on population of stem cell of epidermis created_by: bf creation_date: 2012-09-05T10:21:23Z @@ -74319,8 +73930,8 @@ namespace: biological_process def: "The movement of a dendritic cell within or between different tissues and organs of the body." [CL:0000451, GOC:nhn, PMID:19339990] is_a: GO:0071674 ! mononuclear cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000451 ! dendritic cell -relationship: results_in_movement_of CL:0000451 ! dendritic cell +intersection_of: RO:0002565 CL:0000451 ! results in movement of dendritic cell +relationship: RO:0002565 CL:0000451 ! results in movement of dendritic cell created_by: bf creation_date: 2012-09-05T10:24:46Z @@ -74331,10 +73942,10 @@ namespace: biological_process def: "The process in which a post-anal tail is generated and organized. A post-anal tail is a muscular region of the body that extends posterior to the anus. The post-anal tail may aid locomotion and balance." [GOC:bf, GOC:kmv, Wikipedia:Chordate] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0007812 ! post-anal tail +intersection_of: RO:0002298 UBERON:0007812 ! results in morphogenesis of post-anal tail relationship: in_taxon NCBITaxon:7711 {all_only="true"} ! Chordata -relationship: only_in_taxon NCBITaxon:7711 ! Chordata -relationship: results_in_morphogenesis_of UBERON:0007812 ! post-anal tail +relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata +relationship: RO:0002298 UBERON:0007812 ! results in morphogenesis of post-anal tail created_by: bf creation_date: 2012-09-11T13:54:49Z @@ -74354,8 +73965,8 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for a platelet to attain its fully functional state. A platelet is a non-nucleated disk-shaped cell formed by extrusion from megakaryocytes, found in the blood of all mammals, and mainly involved in blood coagulation." [CL:0000233, GOC:BHF, GOC:vk] is_a: GO:0048469 ! cell maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of CL:0000233 ! platelet -relationship: results_in_maturation_of CL:0000233 ! platelet +intersection_of: RO:0002299 CL:0000233 ! results in maturation of platelet +relationship: RO:0002299 CL:0000233 ! results in maturation of platelet created_by: bf creation_date: 2012-09-11T15:23:11Z @@ -74372,14 +73983,14 @@ synonym: "sodium ion export from cell" EXACT [] is_a: GO:0035725 ! sodium ion transmembrane transport is_a: GO:0140115 ! export across plasma membrane intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29101 ! sodium(1+) -intersection_of: has_target_end_location GO:0005576 ! extracellular region -intersection_of: has_target_start_location GO:0005829 ! cytosol -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:29101 ! sodium(1+) -relationship: has_target_end_location GO:0005576 ! extracellular region -relationship: has_target_start_location GO:0005829 ! cytosol -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005829 ! has target start location cytosol +intersection_of: RO:0002339 GO:0005576 ! has target end location extracellular region +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:29101 ! has primary input sodium(1+) +relationship: RO:0002338 GO:0005829 ! has target start location cytosol +relationship: RO:0002339 GO:0005576 ! has target end location extracellular region +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:29101 ! has primary input sodium(1+) created_by: mah creation_date: 2009-12-16T11:13:55Z @@ -74389,7 +74000,7 @@ name: myofilament namespace: cellular_component def: "Any of the smallest contractile units of a myofibril (striated muscle fiber)." [Wikipedia:Myofilament] synonym: "striated muscle filament" EXACT [GOC:bf] -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of GO:0030016 ! myofibril relationship: part_of GO:0043292 ! contractile muscle fiber @@ -74401,7 +74012,7 @@ id: GO:0036477 name: somatodendritic compartment namespace: cellular_component def: "The region of a neuron that includes the cell body (cell soma) and dendrite(s), but excludes the axon." [GOC:pad, GOC:PARL] -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of CL:0000540 ! neuron created_by: bf creation_date: 2014-07-24T10:06:19Z @@ -74414,9 +74025,9 @@ def: "The characteristic movement of trunk neural crest cells from the neural tu synonym: "trunk NCC migration" EXACT [PMID:2387238] is_a: GO:0001755 ! neural crest cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000011 ! migratory trunk neural crest cell +intersection_of: RO:0002565 CL:0000011 ! results in movement of migratory trunk neural crest cell relationship: part_of GO:0035290 ! trunk segmentation -relationship: results_in_movement_of CL:0000011 ! migratory trunk neural crest cell +relationship: RO:0002565 CL:0000011 ! results in movement of migratory trunk neural crest cell created_by: bf creation_date: 2014-08-26T15:27:44Z @@ -74430,9 +74041,9 @@ synonym: "membrane fusion involved in Golgi reassembly" EXACT [GOC:bf] synonym: "post-mitotic fusion of Golgi membranes" EXACT [PMID:10811609] is_a: GO:0090174 ! organelle membrane fusion intersection_of: GO:0061025 ! membrane fusion -intersection_of: results_in_fusion_of GO:0000139 ! Golgi membrane +intersection_of: RO:0012008 GO:0000139 ! results in fusion of Golgi membrane relationship: part_of GO:0090168 ! Golgi reassembly -relationship: results_in_fusion_of GO:0000139 ! Golgi membrane +relationship: RO:0012008 GO:0000139 ! results in fusion of Golgi membrane created_by: bf creation_date: 2015-05-21T10:05:06Z @@ -74447,10 +74058,10 @@ synonym: "mesencephalic dopaminergic neuron-astrocyte crosstalk" NARROW [PMID:21 synonym: "midbrain dopaminergic neuron-astrocyte crosstalk" NARROW [PMID:21752258] is_a: GO:0150098 ! glial cell-neuron signaling intersection_of: GO:0007267 ! cell-cell signaling -intersection_of: has_end_location CL:0000700 ! dopaminergic neuron -intersection_of: has_start_location CL:0000127 ! astrocyte -relationship: has_end_location CL:0000700 ! dopaminergic neuron -relationship: has_start_location CL:0000127 ! astrocyte +intersection_of: RO:0002231 CL:0000127 ! has start location astrocyte +intersection_of: RO:0002232 CL:0000700 ! has end location dopaminergic neuron +relationship: RO:0002231 CL:0000127 ! has start location astrocyte +relationship: RO:0002232 CL:0000700 ! has end location dopaminergic neuron created_by: bf creation_date: 2016-02-29T14:05:47Z @@ -74515,7 +74126,7 @@ synonym: "SRIF signaling pathway" EXACT [Wikipedia:Somatostatin] synonym: "SST signaling pathway" EXACT [Wikipedia:Somatostatin] is_a: GO:0009755 ! hormone-mediated signaling pathway is_a: GO:0038169 ! somatostatin receptor signaling pathway -relationship: has_primary_input CHEBI:64628 ! somatostatin +relationship: RO:0004009 CHEBI:64628 ! has primary input somatostatin created_by: bf creation_date: 2012-06-12T10:33:21Z @@ -74549,10 +74160,10 @@ synonym: "pronephric tubule formation" EXACT [GOC:mtg_kidney_jan10] synonym: "pronephros tubule formation" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0072079 ! nephron tubule formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005310 ! pronephric nephron tubule +intersection_of: RO:0002297 UBERON:0005310 ! results in formation of anatomical entity pronephric nephron tubule relationship: part_of GO:0039008 ! pronephric nephron tubule morphogenesis relationship: part_of GO:0072116 ! pronephros formation -relationship: results_in_formation_of_anatomical_entity UBERON:0005310 ! pronephric nephron tubule +relationship: RO:0002297 UBERON:0005310 ! results in formation of anatomical entity pronephric nephron tubule created_by: bf creation_date: 2010-07-02T09:37:27Z @@ -74563,10 +74174,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the pronephric nephron are generated and organized. A pronephric nephron is the functional unit of the pronephros." [GOC:mtg_kidney_jan10] is_a: GO:0072028 ! nephron morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005309 ! pronephric nephron +intersection_of: RO:0002298 UBERON:0005309 ! results in morphogenesis of pronephric nephron relationship: part_of GO:0039019 ! pronephric nephron development relationship: part_of GO:0072114 ! pronephros morphogenesis -relationship: results_in_morphogenesis_of UBERON:0005309 ! pronephric nephron +relationship: RO:0002298 UBERON:0005309 ! results in morphogenesis of pronephric nephron created_by: bf creation_date: 2010-07-02T09:38:53Z @@ -74577,10 +74188,10 @@ namespace: biological_process def: "The process in which the anatomical structures of a pronephric nephron tubule are generated and organized from an epithelium. A pronephric nephron tubule is an epithelial tube that is part of the pronephric nephron." [GOC:mtg_kidney_jan10, ZFA:00001558] is_a: GO:0072078 ! nephron tubule morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005310 ! pronephric nephron tubule +intersection_of: RO:0002298 UBERON:0005310 ! results in morphogenesis of pronephric nephron tubule relationship: part_of GO:0039007 ! pronephric nephron morphogenesis relationship: part_of GO:0039020 ! pronephric nephron tubule development -relationship: results_in_morphogenesis_of UBERON:0005310 ! pronephric nephron tubule +relationship: RO:0002298 UBERON:0005310 ! results in morphogenesis of pronephric nephron tubule created_by: bf creation_date: 2010-07-02T09:45:55Z @@ -74592,9 +74203,9 @@ def: "The process whose specific outcome is the progression of the rectal divert synonym: "pronephric rectal diverticulum development" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006172 ! rectal diverticulum +intersection_of: RO:0002296 UBERON:0006172 ! results in development of rectal diverticulum relationship: part_of GO:0048793 ! pronephros development -relationship: results_in_development_of UBERON:0006172 ! rectal diverticulum +relationship: RO:0002296 UBERON:0006172 ! results in development of rectal diverticulum created_by: bf creation_date: 2010-07-02T09:48:58Z @@ -74607,9 +74218,9 @@ synonym: "pronephros proximal tubule morphogenesis" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0039008 ! pronephric nephron tubule morphogenesis is_a: GO:0072158 ! proximal tubule morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0006173 ! pronephric proximal tubule +intersection_of: RO:0002298 UBERON:0006173 ! results in morphogenesis of pronephric proximal tubule relationship: part_of GO:0035776 ! pronephric proximal tubule development -relationship: results_in_morphogenesis_of UBERON:0006173 ! pronephric proximal tubule +relationship: RO:0002298 UBERON:0006173 ! results in morphogenesis of pronephric proximal tubule created_by: bf creation_date: 2010-07-02T09:53:12Z @@ -74621,9 +74232,9 @@ def: "The process in which the anatomical structures of a pronephric nephron dis is_a: GO:0039008 ! pronephric nephron tubule morphogenesis is_a: GO:0072156 ! distal tubule morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0006175 ! pronephric distal tubule +intersection_of: RO:0002298 UBERON:0006175 ! results in morphogenesis of pronephric distal tubule relationship: part_of GO:0035777 ! pronephric distal tubule development -relationship: results_in_morphogenesis_of UBERON:0006175 ! pronephric distal tubule +relationship: RO:0002298 UBERON:0006175 ! results in morphogenesis of pronephric distal tubule created_by: bf creation_date: 2010-07-02T09:58:03Z @@ -74687,9 +74298,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the nephrostome over time, from its formation to the mature structure. The nephrostome is the opening of the pronephros into the body cavity." [GOC:mtg_kidney_jan10, PMID:14686690, PMID:15647339, XAO:0000062] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005308 ! nephrostome +intersection_of: RO:0002296 UBERON:0005308 ! results in development of nephrostome relationship: part_of GO:0048793 ! pronephros development -relationship: results_in_development_of UBERON:0005308 ! nephrostome +relationship: RO:0002296 UBERON:0005308 ! results in development of nephrostome created_by: bf creation_date: 2010-07-02T10:08:16Z @@ -74700,9 +74311,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the pronephric nephron over time, from its formation to the mature structure. A pronephric nephron is the functional unit of the pronephros." [GOC:mtg_kidney_jan10, XAO:00002785] is_a: GO:0072006 ! nephron development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005309 ! pronephric nephron +intersection_of: RO:0002296 UBERON:0005309 ! results in development of pronephric nephron relationship: part_of GO:0048793 ! pronephros development -relationship: results_in_development_of UBERON:0005309 ! pronephric nephron +relationship: RO:0002296 UBERON:0005309 ! results in development of pronephric nephron created_by: bf creation_date: 2010-07-02T10:10:20Z @@ -74713,9 +74324,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a pronephric nephron tubule over time, from its formation to the mature structure. The pronephric nephron tubule is an epithelial tube that is part of the pronephric nephron and connects the filtration unit (glomerulus or glomus) of the pronephros to the pronephric duct." [GOC:mtg_kidney_jan10, PMID:19909807, PMID:9268568] is_a: GO:0072080 ! nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005310 ! pronephric nephron tubule +intersection_of: RO:0002296 UBERON:0005310 ! results in development of pronephric nephron tubule relationship: part_of GO:0039019 ! pronephric nephron development -relationship: results_in_development_of UBERON:0005310 ! pronephric nephron tubule +relationship: RO:0002296 UBERON:0005310 ! results in development of pronephric nephron tubule created_by: bf creation_date: 2010-07-02T10:11:36Z @@ -74727,9 +74338,9 @@ def: "The progression of the glomerulus of the pronephric kidney over time from comment: This term is intended for annotation of fish and other organisms which contain a glomerulus as part of the pronephric nephron. It should not be used for annotation of Xenopus, which contains a pronephric glomus rather than a glomerulus. is_a: GO:0032835 ! glomerulus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004739 ! pronephric glomerulus +intersection_of: RO:0002296 UBERON:0004739 ! results in development of pronephric glomerulus relationship: part_of GO:0039019 ! pronephric nephron development -relationship: results_in_development_of UBERON:0004739 ! pronephric glomerulus +relationship: RO:0002296 UBERON:0004739 ! results in development of pronephric glomerulus created_by: bf creation_date: 2010-07-02T10:13:38Z @@ -74740,9 +74351,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the pronephric duct over time, from its formation to the mature structure. The pronephric duct collects the filtrate from the pronephric tubules and opens to the exterior of the pronephric kidney." [GOC:mtg_kidney_jan10, PMID:15647339, XAO:0000063, ZFA:0000150] is_a: GO:0072176 ! nephric duct development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003060 ! pronephric duct +intersection_of: RO:0002296 UBERON:0003060 ! results in development of pronephric duct relationship: part_of GO:0048793 ! pronephros development -relationship: results_in_development_of UBERON:0003060 ! pronephric duct +relationship: RO:0002296 UBERON:0003060 ! results in development of pronephric duct created_by: bf creation_date: 2010-07-02T10:15:03Z @@ -74753,10 +74364,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the pronephric duct are generated and organized. The pronephric duct collects the filtrate from the pronephric tubules and opens to the exterior of the kidney." [GOC:mtg_kidney_jan10, XAO:0000063, ZFA:0000150] is_a: GO:0072178 ! nephric duct morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003060 ! pronephric duct +intersection_of: RO:0002298 UBERON:0003060 ! results in morphogenesis of pronephric duct relationship: part_of GO:0039022 ! pronephric duct development relationship: part_of GO:0072114 ! pronephros morphogenesis -relationship: results_in_morphogenesis_of UBERON:0003060 ! pronephric duct +relationship: RO:0002298 UBERON:0003060 ! results in morphogenesis of pronephric duct created_by: bf creation_date: 2010-07-02T10:18:09Z @@ -74771,10 +74382,10 @@ synonym: "collagen and cuticulin-based cuticle formation" EXACT [] synonym: "collagen and cuticulin-based cuticle synthesis" EXACT [] is_a: GO:0042335 ! cuticle development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003049 ! collagen and cuticulin-based cuticle +intersection_of: RO:0002296 UBERON:0003049 ! results in development of collagen and cuticulin-based cuticle relationship: in_taxon NCBITaxon:6231 {all_only="true"} ! Nematoda -relationship: only_in_taxon NCBITaxon:6231 ! Nematoda -relationship: results_in_development_of UBERON:0003049 ! collagen and cuticulin-based cuticle +relationship: RO:0002160 NCBITaxon:6231 ! only in taxon Nematoda +relationship: RO:0002296 UBERON:0003049 ! results in development of collagen and cuticulin-based cuticle [Term] id: GO:0040003 @@ -74787,10 +74398,10 @@ synonym: "chitin-based cuticle formation" EXACT [] synonym: "chitin-based cuticle synthesis" EXACT [] is_a: GO:0042335 ! cuticle development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001001 ! chitin-based cuticle +intersection_of: RO:0002296 UBERON:0001001 ! results in development of chitin-based cuticle relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda -relationship: results_in_development_of UBERON:0001001 ! chitin-based cuticle +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda +relationship: RO:0002296 UBERON:0001001 ! results in development of chitin-based cuticle [Term] id: GO:0040007 @@ -74808,7 +74419,7 @@ synonym: "non-developmental growth" RELATED [GOC:mah] is_a: GO:0008150 ! biological_process disjoint_from: GO:0044848 ! biological phase relationship: in_taxon NCBITaxon:131567 {all_only="true"} ! cellular organisms -relationship: only_in_taxon NCBITaxon:131567 ! cellular organisms +relationship: RO:0002160 NCBITaxon:131567 ! only in taxon cellular organisms [Term] id: GO:0040008 @@ -74817,8 +74428,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development." [GOC:ems, GOC:mah] is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0040007 ! growth -relationship: regulates GO:0040007 ! growth +intersection_of: RO:0002211 GO:0040007 ! regulates (processual) growth +relationship: RO:0002211 GO:0040007 ! regulates (processual) growth [Term] id: GO:0040011 @@ -74838,8 +74449,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of locomotion of a cell or organism." [GOC:ems] is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0040011 ! locomotion -relationship: regulates GO:0040011 ! locomotion +intersection_of: RO:0002211 GO:0040011 ! regulates (processual) locomotion +relationship: RO:0002211 GO:0040011 ! regulates (processual) locomotion [Term] id: GO:0040013 @@ -74853,8 +74464,8 @@ synonym: "inhibition of locomotion" NARROW [] is_a: GO:0040012 ! regulation of locomotion is_a: GO:0048519 ! negative regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0040011 ! locomotion -relationship: negatively_regulates GO:0040011 ! locomotion +intersection_of: RO:0002212 GO:0040011 ! negatively regulates locomotion +relationship: RO:0002212 GO:0040011 ! negatively regulates locomotion [Term] id: GO:0040014 @@ -74866,8 +74477,8 @@ synonym: "regulation of body size" EXACT [GOC:dph, GOC:tb] is_a: GO:0048638 ! regulation of developmental growth is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035264 ! multicellular organism growth -relationship: regulates GO:0035264 ! multicellular organism growth +intersection_of: RO:0002211 GO:0035264 ! regulates (processual) multicellular organism growth +relationship: RO:0002211 GO:0035264 ! regulates (processual) multicellular organism growth [Term] id: GO:0040015 @@ -74880,8 +74491,8 @@ is_a: GO:0040014 ! regulation of multicellular organism growth is_a: GO:0048640 ! negative regulation of developmental growth is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035264 ! multicellular organism growth -relationship: negatively_regulates GO:0035264 ! multicellular organism growth +intersection_of: RO:0002212 GO:0035264 ! negatively regulates multicellular organism growth +relationship: RO:0002212 GO:0035264 ! negatively regulates multicellular organism growth [Term] id: GO:0040016 @@ -74904,8 +74515,8 @@ synonym: "upregulation of locomotion" EXACT [] is_a: GO:0040012 ! regulation of locomotion is_a: GO:0048518 ! positive regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0040011 ! locomotion -relationship: positively_regulates GO:0040011 ! locomotion +intersection_of: RO:0002213 GO:0040011 ! positively regulates locomotion +relationship: RO:0002213 GO:0040011 ! positively regulates locomotion [Term] id: GO:0040018 @@ -74918,8 +74529,8 @@ is_a: GO:0040014 ! regulation of multicellular organism growth is_a: GO:0048639 ! positive regulation of developmental growth is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035264 ! multicellular organism growth -relationship: positively_regulates GO:0035264 ! multicellular organism growth +intersection_of: RO:0002213 GO:0035264 ! positively regulates multicellular organism growth +relationship: RO:0002213 GO:0035264 ! positively regulates multicellular organism growth [Term] id: GO:0040019 @@ -74935,8 +74546,8 @@ is_a: GO:0045995 ! regulation of embryonic development is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009790 ! embryo development -relationship: positively_regulates GO:0009790 ! embryo development +intersection_of: RO:0002213 GO:0009790 ! positively regulates embryo development +relationship: RO:0002213 GO:0009790 ! positively regulates embryo development [Term] id: GO:0040020 @@ -74948,9 +74559,9 @@ is_a: GO:0010564 ! regulation of cell cycle process is_a: GO:0051445 ! regulation of meiotic cell cycle is_a: GO:0051783 ! regulation of nuclear division intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0140013 ! meiotic nuclear division -relationship: regulates GO:0051321 ! meiotic cell cycle -relationship: regulates GO:0140013 ! meiotic nuclear division +intersection_of: RO:0002211 GO:0140013 ! regulates (processual) meiotic nuclear division +relationship: RO:0002211 GO:0051321 ! regulates (processual) meiotic cell cycle +relationship: RO:0002211 GO:0140013 ! regulates (processual) meiotic nuclear division [Term] id: GO:0040034 @@ -74978,8 +74589,8 @@ def: "The directed movement of fluid across epithelia." [GOC:jl, PMID:11390830] is_a: GO:0042044 ! fluid transport is_a: GO:0070633 ! transepithelial transport intersection_of: GO:0042044 ! fluid transport -intersection_of: results_in_transport_across UBERON:0000483 ! epithelium -relationship: results_in_transport_across UBERON:0000483 ! epithelium +intersection_of: RO:0002342 UBERON:0000483 ! results in transport across epithelium +relationship: RO:0002342 UBERON:0000483 ! results in transport across epithelium [Term] id: GO:0042048 @@ -75002,8 +74613,8 @@ def: "Any process that modulates the frequency, rate or extent of the chemical r synonym: "regulation of dopamine metabolism" EXACT [] is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042417 ! dopamine metabolic process -relationship: regulates GO:0042417 ! dopamine metabolic process +intersection_of: RO:0002211 GO:0042417 ! regulates (processual) dopamine metabolic process +relationship: RO:0002211 GO:0042417 ! regulates (processual) dopamine metabolic process [Term] id: GO:0042060 @@ -75023,8 +74634,8 @@ def: "The process that results in the generation of glial cells. This includes t synonym: "glial cell generation" EXACT systematic_synonym [] is_a: GO:0022008 ! neurogenesis intersection_of: GO:0008150 ! biological_process -intersection_of: results_in_formation_of_anatomical_entity CL:0000125 ! glial cell -relationship: results_in_formation_of_anatomical_entity CL:0000125 ! glial cell +intersection_of: RO:0002297 CL:0000125 ! results in formation of anatomical entity glial cell +relationship: RO:0002297 CL:0000125 ! results in formation of anatomical entity glial cell [Term] id: GO:0042065 @@ -75033,9 +74644,9 @@ namespace: biological_process def: "Growth of glial cells, non-neuronal cells that provide support and nutrition, maintain homeostasis, form myelin, and participate in signal transmission in the nervous system." [GOC:dph, GOC:isa_complete, GOC:jid] is_a: GO:0048588 ! developmental cell growth intersection_of: GO:0040007 ! growth -intersection_of: results_in_growth_of CL:0000125 ! glial cell +intersection_of: RO:0002343 CL:0000125 ! results in growth of glial cell relationship: part_of GO:0042063 ! gliogenesis -relationship: results_in_growth_of CL:0000125 ! glial cell +relationship: RO:0002343 CL:0000125 ! results in growth of glial cell [Term] id: GO:0042069 @@ -75046,8 +74657,8 @@ synonym: "regulation of catecholamine metabolism" EXACT [] is_a: GO:0033238 ! regulation of amine metabolic process is_a: GO:0080090 ! regulation of primary metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006584 ! catecholamine metabolic process -relationship: regulates GO:0006584 ! catecholamine metabolic process +intersection_of: RO:0002211 GO:0006584 ! regulates (processual) catecholamine metabolic process +relationship: RO:0002211 GO:0006584 ! regulates (processual) catecholamine metabolic process [Term] id: GO:0042073 @@ -75064,10 +74675,10 @@ xref: Wikipedia:Intraflagellar_transport is_a: GO:0010970 ! transport along microtubule is_a: GO:0031503 ! protein-containing complex localization intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input GO:0032991 ! protein-containing complex -intersection_of: occurs_in GO:0005929 ! cilium -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: has_primary_input GO:0032991 ! protein-containing complex +intersection_of: BFO:0000066 GO:0005929 ! occurs in cilium +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +intersection_of: RO:0004009 GO:0032991 ! has primary input protein-containing complex +relationship: BFO:0000066 GO:0005929 ! occurs in cilium relationship: in_taxon NCBITaxon:2759 {all_only="true"} ! Eukaryota relationship: never_in_taxon NCBITaxon:3176 ! Zygnematales relationship: never_in_taxon NCBITaxon:3312 ! Coniferophyta @@ -75075,10 +74686,10 @@ relationship: never_in_taxon NCBITaxon:3378 ! Gnetales relationship: never_in_taxon NCBITaxon:3398 ! Magnoliopsida relationship: never_in_taxon NCBITaxon:4890 ! Ascomycota relationship: never_in_taxon NCBITaxon:5782 ! Dictyostelium -relationship: occurs_in GO:0005929 ! cilium -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota relationship: part_of GO:0044782 ! cilium organization -relationship: results_in_transport_along GO:0005874 ! microtubule +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: RO:0004009 GO:0032991 ! has primary input protein-containing complex [Term] id: GO:0042074 @@ -75099,9 +74710,9 @@ def: "The self-renewing division of a germline stem cell to produce a daughter s synonym: "germ-line stem cell renewal" EXACT [] is_a: GO:0017145 ! stem cell division intersection_of: GO:0051301 ! cell division -intersection_of: has_primary_input CL:0000014 ! germ line stem cell -relationship: has_primary_input CL:0000014 ! germ line stem cell +intersection_of: RO:0004009 CL:0000014 ! has primary input germ line stem cell relationship: part_of GO:0007281 ! germ cell development +relationship: RO:0004009 CL:0000014 ! has primary input germ line stem cell [Term] id: GO:0042092 @@ -75124,8 +74735,8 @@ synonym: "T-lymphocyte proliferation" EXACT [] is_a: GO:0042110 ! T cell activation is_a: GO:0046651 ! lymphocyte proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000084 ! T cell -relationship: acts_on_population_of CL:0000084 ! T cell +intersection_of: RO:0012003 CL:0000084 ! acts on population of T cell +relationship: RO:0012003 CL:0000084 ! acts on population of T cell [Term] id: GO:0042100 @@ -75139,8 +74750,8 @@ synonym: "B-lymphocyte proliferation" EXACT [] is_a: GO:0042113 ! B cell activation is_a: GO:0046651 ! lymphocyte proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000236 ! B cell -relationship: acts_on_population_of CL:0000236 ! B cell +intersection_of: RO:0012003 CL:0000236 ! acts on population of B cell +relationship: RO:0012003 CL:0000236 ! acts on population of B cell [Term] id: GO:0042102 @@ -75158,8 +74769,8 @@ is_a: GO:0042129 ! regulation of T cell proliferation is_a: GO:0050671 ! positive regulation of lymphocyte proliferation is_a: GO:0050870 ! positive regulation of T cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042098 ! T cell proliferation -relationship: positively_regulates GO:0042098 ! T cell proliferation +intersection_of: RO:0002213 GO:0042098 ! positively regulates T cell proliferation +relationship: RO:0002213 GO:0042098 ! positively regulates T cell proliferation [Term] id: GO:0042103 @@ -75178,8 +74789,8 @@ synonym: "upregulation of T cell homeostatic proliferation" EXACT [] is_a: GO:0042102 ! positive regulation of T cell proliferation is_a: GO:0046013 ! regulation of T cell homeostatic proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001777 ! T cell homeostatic proliferation -relationship: positively_regulates GO:0001777 ! T cell homeostatic proliferation +intersection_of: RO:0002213 GO:0001777 ! positively regulates T cell homeostatic proliferation +relationship: RO:0002213 GO:0001777 ! positively regulates T cell homeostatic proliferation [Term] id: GO:0042110 @@ -75191,8 +74802,8 @@ synonym: "T-cell activation" EXACT [] synonym: "T-lymphocyte activation" EXACT [] is_a: GO:0046649 ! lymphocyte activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000084 ! T cell -relationship: has_primary_input CL:0000084 ! T cell +intersection_of: RO:0004009 CL:0000084 ! has primary input T cell +relationship: RO:0004009 CL:0000084 ! has primary input T cell [Term] id: GO:0042113 @@ -75204,8 +74815,8 @@ synonym: "B-cell activation" EXACT [] synonym: "B-lymphocyte activation" EXACT [] is_a: GO:0046649 ! lymphocyte activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000236 ! B cell -relationship: has_primary_input CL:0000236 ! B cell +intersection_of: RO:0004009 CL:0000236 ! has primary input B cell +relationship: RO:0004009 CL:0000236 ! has primary input B cell [Term] id: GO:0042116 @@ -75215,8 +74826,8 @@ def: "A change in morphology and behavior of a macrophage resulting from exposur synonym: "macrophage polarization" EXACT [] is_a: GO:0002274 ! myeloid leukocyte activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000235 ! macrophage -relationship: has_primary_input CL:0000235 ! macrophage +intersection_of: RO:0004009 CL:0000235 ! has primary input macrophage +relationship: RO:0004009 CL:0000235 ! has primary input macrophage [Term] id: GO:0042117 @@ -75225,8 +74836,8 @@ namespace: biological_process def: "The change in morphology and behavior of a monocyte resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor." [GOC:mgi_curators, ISBN:0781735149] is_a: GO:0002274 ! myeloid leukocyte activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000576 ! monocyte -relationship: has_primary_input CL:0000576 ! monocyte +intersection_of: RO:0004009 CL:0000576 ! has primary input monocyte +relationship: RO:0004009 CL:0000576 ! has primary input monocyte [Term] id: GO:0042118 @@ -75235,8 +74846,8 @@ namespace: biological_process def: "The change in morphology and behavior of an endothelial cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor." [GOC:mgi_curators, ISBN:0781735149, PMID:12851652, PMID:14581484] is_a: GO:0001775 ! cell activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000115 ! endothelial cell -relationship: has_primary_input CL:0000115 ! endothelial cell +intersection_of: RO:0004009 CL:0000115 ! has primary input endothelial cell +relationship: RO:0004009 CL:0000115 ! has primary input endothelial cell [Term] id: GO:0042119 @@ -75245,8 +74856,8 @@ namespace: biological_process def: "The change in morphology and behavior of a neutrophil resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor." [GOC:mgi_curators, ISBN:0781735149] is_a: GO:0036230 ! granulocyte activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000775 ! neutrophil -relationship: has_primary_input CL:0000775 ! neutrophil +intersection_of: RO:0004009 CL:0000775 ! has primary input neutrophil +relationship: RO:0004009 CL:0000775 ! has primary input neutrophil [Term] id: GO:0042127 @@ -75256,9 +74867,9 @@ def: "Any process that modulates the frequency, rate or extent of cell prolifera synonym: "regulation of cell proliferation" RELATED [] is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008283 ! cell population proliferation +intersection_of: RO:0002211 GO:0008283 ! regulates (processual) cell population proliferation relationship: never_in_taxon NCBITaxon:4751 ! Fungi -relationship: regulates GO:0008283 ! cell population proliferation +relationship: RO:0002211 GO:0008283 ! regulates (processual) cell population proliferation [Term] id: GO:0042129 @@ -75271,8 +74882,8 @@ synonym: "regulation of T-lymphocyte proliferation" EXACT [] is_a: GO:0050670 ! regulation of lymphocyte proliferation is_a: GO:0050863 ! regulation of T cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042098 ! T cell proliferation -relationship: regulates GO:0042098 ! T cell proliferation +intersection_of: RO:0002211 GO:0042098 ! regulates (processual) T cell proliferation +relationship: RO:0002211 GO:0042098 ! regulates (processual) T cell proliferation [Term] id: GO:0042130 @@ -75290,8 +74901,8 @@ is_a: GO:0042129 ! regulation of T cell proliferation is_a: GO:0050672 ! negative regulation of lymphocyte proliferation is_a: GO:0050868 ! negative regulation of T cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042098 ! T cell proliferation -relationship: negatively_regulates GO:0042098 ! T cell proliferation +intersection_of: RO:0002212 GO:0042098 ! negatively regulates T cell proliferation +relationship: RO:0002212 GO:0042098 ! negatively regulates T cell proliferation [Term] id: GO:0042157 @@ -75301,8 +74912,8 @@ def: "The chemical reactions and pathways involving any conjugated, water-solubl synonym: "lipoprotein metabolism" EXACT [] is_a: GO:0043170 ! macromolecule metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:6495 ! lipoprotein -relationship: has_primary_input_or_output CHEBI:6495 ! lipoprotein +intersection_of: RO:0004007 CHEBI:6495 ! has primary input or output lipoprotein +relationship: RO:0004007 CHEBI:6495 ! has primary input or output lipoprotein [Term] id: GO:0042158 @@ -75317,8 +74928,8 @@ synonym: "lipoprotein synthesis" EXACT [] is_a: GO:0009059 ! macromolecule biosynthetic process is_a: GO:0042157 ! lipoprotein metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:6495 ! lipoprotein -relationship: has_primary_output CHEBI:6495 ! lipoprotein +intersection_of: RO:0004008 CHEBI:6495 ! has primary output lipoprotein +relationship: RO:0004008 CHEBI:6495 ! has primary output lipoprotein [Term] id: GO:0042159 @@ -75331,8 +74942,8 @@ synonym: "lipoprotein degradation" EXACT [] is_a: GO:0009057 ! macromolecule catabolic process is_a: GO:0042157 ! lipoprotein metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:6495 ! lipoprotein -relationship: has_primary_input CHEBI:6495 ! lipoprotein +intersection_of: RO:0004009 CHEBI:6495 ! has primary input lipoprotein +relationship: RO:0004009 CHEBI:6495 ! has primary input lipoprotein [Term] id: GO:0042166 @@ -75341,8 +74952,8 @@ namespace: molecular_function def: "Binding to acetylcholine, an acetic acid ester of the organic base choline that functions as a neurotransmitter, released at the synapses of parasympathetic nerves and at neuromuscular junctions." [GOC:ai] is_a: GO:0043169 ! cation binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:15355 ! acetylcholine -relationship: has_primary_input CHEBI:15355 ! acetylcholine +intersection_of: RO:0004009 CHEBI:15355 ! has primary input acetylcholine +relationship: RO:0004009 CHEBI:15355 ! has primary input acetylcholine [Term] id: GO:0042175 @@ -75381,8 +74992,8 @@ synonym: "regulation of protein degradation" EXACT [] is_a: GO:0009894 ! regulation of catabolic process is_a: GO:0051246 ! regulation of protein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030163 ! protein catabolic process -relationship: regulates GO:0030163 ! protein catabolic process +intersection_of: RO:0002211 GO:0030163 ! regulates (processual) protein catabolic process +relationship: RO:0002211 GO:0030163 ! regulates (processual) protein catabolic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23112" xsd:anyURI created_by: kmv creation_date: 2014-08-21T15:05:45Z @@ -75425,8 +75036,8 @@ is_a: GO:0009895 ! negative regulation of catabolic process is_a: GO:0042176 ! regulation of protein catabolic process is_a: GO:0051248 ! negative regulation of protein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030163 ! protein catabolic process -relationship: negatively_regulates GO:0030163 ! protein catabolic process +intersection_of: RO:0002212 GO:0030163 ! negatively regulates protein catabolic process +relationship: RO:0002212 GO:0030163 ! negatively regulates protein catabolic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23112" xsd:anyURI [Term] @@ -75435,7 +75046,7 @@ name: xenobiotic catabolic process namespace: biological_process alt_id: GO:0042737 alt_id: GO:0042738 -def: "The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical." [GOC:jl, GOC:krc] +def: "The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to the organism exposed to it, carried out by individual cells. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical." [GOC:jl, GOC:krc] subset: goslim_prokaryote synonym: "drug breakdown" RELATED [] synonym: "drug catabolic process" RELATED [] @@ -75449,21 +75060,21 @@ synonym: "xenobiotic breakdown" EXACT [] synonym: "xenobiotic catabolism" EXACT [] synonym: "xenobiotic degradation" EXACT [] is_a: GO:0006805 ! xenobiotic metabolic process -is_a: GO:0044248 ! cellular catabolic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19460" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0042180 -name: cellular ketone metabolic process +name: ketone metabolic process namespace: biological_process def: "The chemical reactions and pathways involving any of a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms, as carried out by individual cells. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups." [GOC:jl, ISBN:0787650153] subset: goslim_pir synonym: "ketone metabolism" EXACT [] -is_a: GO:0044237 ! cellular metabolic process -is_a: GO:0044281 ! small molecule metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:17087 ! ketone -relationship: has_primary_input_or_output CHEBI:17087 ! ketone +intersection_of: RO:0004007 CHEBI:17087 ! has primary input or output ketone +relationship: RO:0004007 CHEBI:17087 ! has primary input or output ketone +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0042181 @@ -75474,12 +75085,11 @@ synonym: "ketone anabolism" EXACT [] synonym: "ketone biosynthesis" EXACT [] synonym: "ketone formation" EXACT [] synonym: "ketone synthesis" EXACT [] -is_a: GO:0042180 ! cellular ketone metabolic process -is_a: GO:0044249 ! cellular biosynthetic process +is_a: GO:0042180 ! ketone metabolic process is_a: GO:0044283 ! small molecule biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:17087 ! ketone -relationship: has_primary_output CHEBI:17087 ! ketone +intersection_of: RO:0004008 CHEBI:17087 ! has primary output ketone +relationship: RO:0004008 CHEBI:17087 ! has primary output ketone [Term] id: GO:0042182 @@ -75489,12 +75099,11 @@ def: "The chemical reactions and pathways resulting in the breakdown of ketones, synonym: "ketone breakdown" EXACT [] synonym: "ketone catabolism" EXACT [] synonym: "ketone degradation" EXACT [] -is_a: GO:0042180 ! cellular ketone metabolic process -is_a: GO:0044248 ! cellular catabolic process +is_a: GO:0042180 ! ketone metabolic process is_a: GO:0044282 ! small molecule catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:17087 ! ketone -relationship: has_primary_input CHEBI:17087 ! ketone +intersection_of: RO:0004009 CHEBI:17087 ! has primary input ketone +relationship: RO:0004009 CHEBI:17087 ! has primary input ketone [Term] id: GO:0042183 @@ -75509,8 +75118,8 @@ synonym: "formic acid catabolism" EXACT [] is_a: GO:0015942 ! formate metabolic process is_a: GO:0072329 ! monocarboxylic acid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:15740 ! formate -relationship: has_primary_input CHEBI:15740 ! formate +intersection_of: RO:0004009 CHEBI:15740 ! has primary input formate +relationship: RO:0004009 CHEBI:15740 ! has primary input formate [Term] id: GO:0042203 @@ -75525,8 +75134,8 @@ is_a: GO:0042178 ! xenobiotic catabolic process is_a: GO:0072491 ! toluene-containing compound catabolic process is_a: GO:0120253 ! hydrocarbon catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:17578 ! toluene -relationship: has_primary_input CHEBI:17578 ! toluene +intersection_of: RO:0004009 CHEBI:17578 ! has primary input toluene +relationship: RO:0004009 CHEBI:17578 ! has primary input toluene [Term] id: GO:0042214 @@ -75537,12 +75146,12 @@ synonym: "terpene metabolism" EXACT [] is_a: GO:0006720 ! isoprenoid metabolic process is_a: GO:0120252 ! hydrocarbon metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:35186 ! terpene -relationship: has_primary_input_or_output CHEBI:35186 ! terpene +intersection_of: RO:0004007 CHEBI:35186 ! has primary input or output terpene +relationship: RO:0004007 CHEBI:35186 ! has primary input or output terpene [Term] id: GO:0042219 -name: cellular modified amino acid catabolic process +name: modified amino acid catabolic process namespace: biological_process def: "The chemical reactions and pathways resulting in the breakdown of compounds derived from amino acids, organic acids containing one or more amino substituents." [GOC:ai] synonym: "amino acid derivative catabolic process" EXACT [] @@ -75551,15 +75160,16 @@ synonym: "cellular amino acid derivative catabolic process" EXACT [] synonym: "cellular amino acid derivative catabolism" EXACT [] synonym: "cellular amino acid derivative degradation" EXACT [] synonym: "cellular modified amino acid breakdown" EXACT [GOC:mah] +synonym: "cellular modified amino acid catabolic process" EXACT [GOC:mah] synonym: "cellular modified amino acid catabolism" EXACT [GOC:mah] synonym: "cellular modified amino acid degradation" EXACT [GOC:mah] -synonym: "modified amino acid catabolic process" EXACT [GOC:mah] synonym: "modified amino acid catabolism" EXACT [GOC:mah] -is_a: GO:0006575 ! cellular modified amino acid metabolic process -is_a: GO:1901565 ! organonitrogen compound catabolic process +is_a: GO:0006575 ! modified amino acid metabolic process +is_a: GO:0009056 ! catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:83821 ! amino acid derivative -relationship: has_primary_input CHEBI:83821 ! amino acid derivative +intersection_of: RO:0004009 CHEBI:83821 ! has primary input amino-acid derivative +relationship: RO:0004009 CHEBI:83821 ! has primary input amino-acid derivative +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0042221 @@ -75578,8 +75188,8 @@ synonym: "response to chemical stimulus" EXACT [GOC:dos] synonym: "response to chemical substance" EXACT [] is_a: GO:0050896 ! response to stimulus intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:24431 ! chemical entity -relationship: has_primary_input CHEBI:24431 ! chemical entity +intersection_of: RO:0004009 CHEBI:24431 ! has primary input chemical entity +relationship: RO:0004009 CHEBI:24431 ! has primary input chemical entity [Term] id: GO:0042246 @@ -75589,9 +75199,9 @@ def: "The regrowth of lost or destroyed tissues." [GOC:curators] is_a: GO:0031099 ! regeneration is_a: GO:0048589 ! developmental growth intersection_of: GO:0031099 ! regeneration -intersection_of: results_in_maturation_of UBERON:0000479 ! tissue +intersection_of: RO:0002299 UBERON:0000479 ! results in maturation of tissue relationship: never_in_taxon NCBITaxon:4751 ! Fungi -relationship: results_in_maturation_of UBERON:0000479 ! tissue +relationship: RO:0002299 UBERON:0000479 ! results in maturation of tissue [Term] id: GO:0042254 @@ -75618,11 +75228,11 @@ alt_id: GO:0042257 def: "The aggregation, arrangement and bonding together of the mature ribosome and of its subunits." [GOC:ma, PMID:30467428] subset: goslim_yeast synonym: "ribosomal subunit assembly" NARROW [GOC:mah, GOC:vw] -is_a: GO:0140694 ! non-membrane-bounded organelle assembly +is_a: GO:0140694 ! membraneless organelle assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0005840 ! ribosome +intersection_of: RO:0002588 GO:0005840 ! results in assembly of ribosome relationship: part_of GO:0042254 ! ribosome biogenesis -relationship: results_in_assembly_of GO:0005840 ! ribosome +relationship: RO:0002588 GO:0005840 ! results in assembly of ribosome [Term] id: GO:0042267 @@ -75642,8 +75252,8 @@ synonym: "NK cell mediated cytotoxicity" EXACT [] is_a: GO:0001909 ! leukocyte mediated cytotoxicity is_a: GO:0002228 ! natural killer cell mediated immunity intersection_of: GO:0001906 ! cell killing -intersection_of: process_has_causal_agent CL:0000623 ! natural killer cell -relationship: process_has_causal_agent CL:0000623 ! natural killer cell +intersection_of: RO:0002608 CL:0000623 ! process has causal agent natural killer cell +relationship: RO:0002608 CL:0000623 ! process has causal agent natural killer cell [Term] id: GO:0042269 @@ -75661,8 +75271,8 @@ synonym: "regulation of NK cell mediated cytotoxicity" RELATED [] is_a: GO:0001910 ! regulation of leukocyte mediated cytotoxicity is_a: GO:0002715 ! regulation of natural killer cell mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042267 ! natural killer cell mediated cytotoxicity -relationship: regulates GO:0042267 ! natural killer cell mediated cytotoxicity +intersection_of: RO:0002211 GO:0042267 ! regulates (processual) natural killer cell mediated cytotoxicity +relationship: RO:0002211 GO:0042267 ! regulates (processual) natural killer cell mediated cytotoxicity [Term] id: GO:0042277 @@ -75673,8 +75283,8 @@ subset: goslim_chembl subset: goslim_pir is_a: GO:0005488 ! binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:60466 ! peptide zwitterion -relationship: has_primary_input CHEBI:60466 ! peptide zwitterion +intersection_of: RO:0004009 CHEBI:60466 ! has primary input peptide zwitterion +relationship: RO:0004009 CHEBI:60466 ! has primary input peptide zwitterion [Term] id: GO:0042278 @@ -75687,8 +75297,8 @@ synonym: "purine nucleoside metabolism" EXACT [] is_a: GO:0009116 ! nucleoside metabolic process is_a: GO:0072521 ! purine-containing compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26394 ! purine nucleoside -relationship: has_primary_input_or_output CHEBI:26394 ! purine nucleoside +intersection_of: RO:0004007 CHEBI:26394 ! has primary input or output purine nucleoside +relationship: RO:0004007 CHEBI:26394 ! has primary input or output purine nucleoside [Term] id: GO:0042301 @@ -75697,8 +75307,8 @@ namespace: molecular_function def: "Binding to a phosphate ion." [GOC:jl] is_a: GO:0043168 ! anion binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:43474 ! hydrogenphosphate -relationship: has_primary_input CHEBI:43474 ! hydrogenphosphate +intersection_of: RO:0004009 CHEBI:43474 ! has primary input hydrogenphosphate +relationship: RO:0004009 CHEBI:43474 ! has primary input hydrogenphosphate [Term] id: GO:0042303 @@ -75719,11 +75329,10 @@ synonym: "regulation of fatty acid biosynthesis" EXACT [] synonym: "regulation of fatty acid formation" EXACT [] synonym: "regulation of fatty acid synthesis" EXACT [] is_a: GO:0019217 ! regulation of fatty acid metabolic process -is_a: GO:0031326 ! regulation of cellular biosynthetic process is_a: GO:0046890 ! regulation of lipid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006633 ! fatty acid biosynthetic process -relationship: regulates GO:0006633 ! fatty acid biosynthetic process +intersection_of: RO:0002211 GO:0006633 ! regulates (processual) fatty acid biosynthetic process +relationship: RO:0002211 GO:0006633 ! regulates (processual) fatty acid biosynthetic process [Term] id: GO:0042306 @@ -75737,8 +75346,8 @@ is_a: GO:0033157 ! regulation of intracellular protein transport is_a: GO:0046822 ! regulation of nucleocytoplasmic transport is_a: GO:1900180 ! regulation of protein localization to nucleus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006606 ! protein import into nucleus -relationship: regulates GO:0006606 ! protein import into nucleus +intersection_of: RO:0002211 GO:0006606 ! regulates (processual) protein import into nucleus +relationship: RO:0002211 GO:0006606 ! regulates (processual) protein import into nucleus [Term] id: GO:0042307 @@ -75758,8 +75367,8 @@ is_a: GO:0046824 ! positive regulation of nucleocytoplasmic transport is_a: GO:0090316 ! positive regulation of intracellular protein transport is_a: GO:1900182 ! positive regulation of protein localization to nucleus intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006606 ! protein import into nucleus -relationship: positively_regulates GO:0006606 ! protein import into nucleus +intersection_of: RO:0002213 GO:0006606 ! positively regulates protein import into nucleus +relationship: RO:0002213 GO:0006606 ! positively regulates protein import into nucleus [Term] id: GO:0042308 @@ -75778,8 +75387,8 @@ is_a: GO:0046823 ! negative regulation of nucleocytoplasmic transport is_a: GO:0090317 ! negative regulation of intracellular protein transport is_a: GO:1900181 ! negative regulation of protein localization to nucleus intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006606 ! protein import into nucleus -relationship: negatively_regulates GO:0006606 ! protein import into nucleus +intersection_of: RO:0002212 GO:0006606 ! negatively regulates protein import into nucleus +relationship: RO:0002212 GO:0006606 ! negatively regulates protein import into nucleus [Term] id: GO:0042321 @@ -75795,8 +75404,8 @@ is_a: GO:0042754 ! negative regulation of circadian rhythm is_a: GO:0045187 ! regulation of circadian sleep/wake cycle, sleep is_a: GO:0048521 ! negative regulation of behavior intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0050802 ! circadian sleep/wake cycle, sleep -relationship: negatively_regulates GO:0050802 ! circadian sleep/wake cycle, sleep +intersection_of: RO:0002212 GO:0050802 ! negatively regulates circadian sleep/wake cycle, sleep +relationship: RO:0002212 GO:0050802 ! negatively regulates circadian sleep/wake cycle, sleep [Term] id: GO:0042323 @@ -75811,8 +75420,8 @@ synonym: "negative regulation of non-REM sleep" EXACT [] is_a: GO:0042321 ! negative regulation of circadian sleep/wake cycle, sleep is_a: GO:0045188 ! regulation of circadian sleep/wake cycle, non-REM sleep intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042748 ! circadian sleep/wake cycle, non-REM sleep -relationship: negatively_regulates GO:0042748 ! circadian sleep/wake cycle, non-REM sleep +intersection_of: RO:0002212 GO:0042748 ! negatively regulates circadian sleep/wake cycle, non-REM sleep +relationship: RO:0002212 GO:0042748 ! negatively regulates circadian sleep/wake cycle, non-REM sleep [Term] id: GO:0042325 @@ -75820,11 +75429,11 @@ name: regulation of phosphorylation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule." [GOC:jl] comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate is_a: GO:0019220 ! regulation of phosphate metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0016310 ! phosphorylation -relationship: regulates GO:0016310 ! phosphorylation +intersection_of: RO:0002211 GO:0016310 ! regulates (processual) phosphorylation +relationship: RO:0002211 GO:0016310 ! regulates (processual) phosphorylation property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI [Term] @@ -75833,7 +75442,7 @@ name: negative regulation of phosphorylation namespace: biological_process def: "Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule." [GOC:jl] comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "down regulation of phosphorylation" EXACT [] synonym: "down-regulation of phosphorylation" EXACT [] synonym: "downregulation of phosphorylation" EXACT [] @@ -75841,8 +75450,8 @@ synonym: "inhibition of phosphorylation" NARROW [] is_a: GO:0042325 ! regulation of phosphorylation is_a: GO:0045936 ! negative regulation of phosphate metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0016310 ! phosphorylation -relationship: negatively_regulates GO:0016310 ! phosphorylation +intersection_of: RO:0002212 GO:0016310 ! negatively regulates phosphorylation +relationship: RO:0002212 GO:0016310 ! negatively regulates phosphorylation property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI [Term] @@ -75858,8 +75467,8 @@ synonym: "upregulation of phosphorylation" EXACT [] is_a: GO:0042325 ! regulation of phosphorylation is_a: GO:0045937 ! positive regulation of phosphate metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0016310 ! phosphorylation -relationship: positively_regulates GO:0016310 ! phosphorylation +intersection_of: RO:0002213 GO:0016310 ! positively regulates phosphorylation +relationship: RO:0002213 GO:0016310 ! positively regulates phosphorylation [Term] id: GO:0042330 @@ -75884,9 +75493,9 @@ synonym: "cuticle formation" EXACT [] synonym: "cuticle synthesis" EXACT [] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001002 ! cuticle +intersection_of: RO:0002296 UBERON:0001002 ! results in development of cuticle relationship: part_of GO:0007275 ! multicellular organism development -relationship: results_in_development_of UBERON:0001002 ! cuticle +relationship: RO:0002296 UBERON:0001002 ! results in development of cuticle [Term] id: GO:0042337 @@ -75914,8 +75523,8 @@ synonym: "keratan sulphate metabolism" EXACT [] is_a: GO:0006790 ! sulfur compound metabolic process is_a: GO:1903510 ! mucopolysaccharide metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:60924 ! keratan sulfate -relationship: has_primary_input_or_output CHEBI:60924 ! keratan sulfate +intersection_of: RO:0004007 CHEBI:60924 ! has primary input or output keratan sulfate +relationship: RO:0004007 CHEBI:60924 ! has primary input or output keratan sulfate [Term] id: GO:0042340 @@ -75931,8 +75540,8 @@ is_a: GO:0006027 ! glycosaminoglycan catabolic process is_a: GO:0042339 ! keratan sulfate metabolic process is_a: GO:0044273 ! sulfur compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:60924 ! keratan sulfate -relationship: has_primary_input CHEBI:60924 ! keratan sulfate +intersection_of: RO:0004009 CHEBI:60924 ! has primary input keratan sulfate +relationship: RO:0004009 CHEBI:60924 ! has primary input keratan sulfate [Term] id: GO:0042379 @@ -75943,8 +75552,8 @@ synonym: "chemokine receptor ligand" NARROW [] is_a: GO:0001664 ! G protein-coupled receptor binding is_a: GO:0005126 ! cytokine receptor binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input PR:000001128 ! chemokine receptor -relationship: has_primary_input PR:000001128 ! chemokine receptor +intersection_of: RO:0004009 PR:000001128 ! has primary input chemokine receptor +relationship: RO:0004009 PR:000001128 ! has primary input chemokine receptor [Term] id: GO:0042386 @@ -75955,10 +75564,10 @@ synonym: "arthropod blood cell differentiation" EXACT [] is_a: GO:0002376 ! immune system process is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000387 ! hemocyte (sensu Arthropoda) +intersection_of: RO:0002315 CL:0000387 ! results in acquisition of features of hemocyte (sensu Arthropoda) relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda -relationship: results_in_acquisition_of_features_of CL:0000387 ! hemocyte (sensu Arthropoda) +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda +relationship: RO:0002315 CL:0000387 ! results in acquisition of features of hemocyte (sensu Arthropoda) [Term] id: GO:0042391 @@ -75970,7 +75579,7 @@ relationship: has_part GO:0034220 ! monoatomic ion transmembrane transport [Term] id: GO:0042398 -name: cellular modified amino acid biosynthetic process +name: modified amino acid biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of compounds derived from amino acids, organic acids containing one or more amino substituents." [GOC:ai] synonym: "amino acid derivative biosynthetic process" EXACT [] @@ -75983,11 +75592,12 @@ synonym: "cellular modified amino acid anabolism" EXACT [GOC:mah] synonym: "cellular modified amino acid biosynthesis" EXACT [GOC:mah] synonym: "cellular modified amino acid formation" EXACT [GOC:mah] synonym: "cellular modified amino acid synthesis" EXACT [GOC:mah] -is_a: GO:0006575 ! cellular modified amino acid metabolic process -is_a: GO:1901566 ! organonitrogen compound biosynthetic process +is_a: GO:0006575 ! modified amino acid metabolic process +is_a: GO:0009058 ! biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:83821 ! amino acid derivative -relationship: has_primary_output CHEBI:83821 ! amino acid derivative +intersection_of: RO:0004008 CHEBI:83821 ! has primary output amino-acid derivative +relationship: RO:0004008 CHEBI:83821 ! has primary output amino-acid derivative +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0042401 @@ -76004,13 +75614,14 @@ is_a: GO:0009309 ! amine biosynthetic process [Term] id: GO:0042402 -name: cellular biogenic amine catabolic process +name: biogenic amine catabolic process namespace: biological_process def: "The chemical reactions and pathways occurring at the level of individual cells resulting in the breakdown of biogenic amines, any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters." [GOC:go_curators, GOC:jl, ISBN:0198506732] synonym: "biogenic amine breakdown" EXACT [] synonym: "biogenic amine catabolism" EXACT [] synonym: "biogenic amine degradation" EXACT [] is_a: GO:0009310 ! amine catabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0042403 @@ -76018,7 +75629,7 @@ name: thyroid hormone metabolic process namespace: biological_process def: "The chemical reactions and pathways involving any of the compounds secreted by the thyroid gland, largely thyroxine and triiodothyronine." [GOC:jl, ISBN:0198506732] synonym: "thyroid hormone metabolism" EXACT [] -is_a: GO:0006575 ! cellular modified amino acid metabolic process +is_a: GO:0006575 ! modified amino acid metabolic process is_a: GO:0018958 ! phenol-containing compound metabolic process is_a: GO:0042445 ! hormone metabolic process @@ -76032,8 +75643,8 @@ synonym: "adrenaline metabolism" EXACT [] synonym: "epinephrine metabolism" EXACT [] is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:71406 ! (R)-adrenaline(1+) -relationship: has_primary_input_or_output CHEBI:71406 ! (R)-adrenaline(1+) +intersection_of: RO:0004007 CHEBI:71406 ! has primary input or output (R)-adrenaline(1+) +relationship: RO:0004007 CHEBI:71406 ! has primary input or output (R)-adrenaline(1+) [Term] id: GO:0042415 @@ -76047,8 +75658,8 @@ synonym: "noradrenaline metabolism" EXACT [] synonym: "norepinephrine metabolism" EXACT [] is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:72587 ! (R)-noradrenaline(1+) -relationship: has_primary_input_or_output CHEBI:72587 ! (R)-noradrenaline(1+) +intersection_of: RO:0004007 CHEBI:72587 ! has primary input or output (R)-noradrenaline(1+) +relationship: RO:0004007 CHEBI:72587 ! has primary input or output (R)-noradrenaline(1+) [Term] id: GO:0042416 @@ -76062,8 +75673,8 @@ synonym: "dopamine synthesis" EXACT [] is_a: GO:0009058 ! biosynthetic process is_a: GO:0042417 ! dopamine metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:59905 ! dopaminium(1+) -relationship: has_primary_output CHEBI:59905 ! dopaminium(1+) +intersection_of: RO:0004008 CHEBI:59905 ! has primary output dopaminium(1+) +relationship: RO:0004008 CHEBI:59905 ! has primary output dopaminium(1+) [Term] id: GO:0042417 @@ -76073,9 +75684,9 @@ def: "The chemical reactions and pathways involving dopamine, a catecholamine ne synonym: "dopamine metabolism" EXACT [] is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:59905 ! dopaminium(1+) -relationship: has_primary_input_or_output CHEBI:59905 ! dopaminium(1+) +intersection_of: RO:0004007 CHEBI:59905 ! has primary input or output dopaminium(1+) relationship: never_in_taxon NCBITaxon:4751 ! Fungi +relationship: RO:0004007 CHEBI:59905 ! has primary input or output dopaminium(1+) [Term] id: GO:0042418 @@ -76091,8 +75702,8 @@ synonym: "epinephrine synthesis" EXACT [] is_a: GO:0009058 ! biosynthetic process is_a: GO:0042414 ! epinephrine metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:71406 ! (R)-adrenaline(1+) -relationship: has_primary_output CHEBI:71406 ! (R)-adrenaline(1+) +intersection_of: RO:0004008 CHEBI:71406 ! has primary output (R)-adrenaline(1+) +relationship: RO:0004008 CHEBI:71406 ! has primary output (R)-adrenaline(1+) [Term] id: GO:0042419 @@ -76107,8 +75718,8 @@ synonym: "epinephrine degradation" EXACT [] is_a: GO:0009056 ! catabolic process is_a: GO:0042414 ! epinephrine metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:71406 ! (R)-adrenaline(1+) -relationship: has_primary_input CHEBI:71406 ! (R)-adrenaline(1+) +intersection_of: RO:0004009 CHEBI:71406 ! has primary input (R)-adrenaline(1+) +relationship: RO:0004009 CHEBI:71406 ! has primary input (R)-adrenaline(1+) [Term] id: GO:0042420 @@ -76121,8 +75732,8 @@ synonym: "dopamine degradation" EXACT [] is_a: GO:0009056 ! catabolic process is_a: GO:0042417 ! dopamine metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:59905 ! dopaminium(1+) -relationship: has_primary_input CHEBI:59905 ! dopaminium(1+) +intersection_of: RO:0004009 CHEBI:59905 ! has primary input dopaminium(1+) +relationship: RO:0004009 CHEBI:59905 ! has primary input dopaminium(1+) [Term] id: GO:0042421 @@ -76140,8 +75751,8 @@ synonym: "norepinephrine synthesis" EXACT [] is_a: GO:0009058 ! biosynthetic process is_a: GO:0042415 ! norepinephrine metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:72587 ! (R)-noradrenaline(1+) -relationship: has_primary_output CHEBI:72587 ! (R)-noradrenaline(1+) +intersection_of: RO:0004008 CHEBI:72587 ! has primary output (R)-noradrenaline(1+) +relationship: RO:0004008 CHEBI:72587 ! has primary output (R)-noradrenaline(1+) [Term] id: GO:0042422 @@ -76159,8 +75770,8 @@ xref: Wikipedia:Norepinephrine#Degradation is_a: GO:0009056 ! catabolic process is_a: GO:0042415 ! norepinephrine metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) -relationship: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) +intersection_of: RO:0004009 CHEBI:72587 ! has primary input (R)-noradrenaline(1+) +relationship: RO:0004009 CHEBI:72587 ! has primary input (R)-noradrenaline(1+) [Term] id: GO:0042423 @@ -76176,8 +75787,8 @@ is_a: GO:0006584 ! catecholamine metabolic process is_a: GO:0009713 ! catechol-containing compound biosynthetic process is_a: GO:0042401 ! biogenic amine biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:33567 ! catecholamine -relationship: has_primary_output CHEBI:33567 ! catecholamine +intersection_of: RO:0004008 CHEBI:33567 ! has primary output catecholamine +relationship: RO:0004008 CHEBI:33567 ! has primary output catecholamine [Term] id: GO:0042424 @@ -76189,10 +75800,10 @@ synonym: "catecholamine catabolism" EXACT [] synonym: "catecholamine degradation" EXACT [] is_a: GO:0006584 ! catecholamine metabolic process is_a: GO:0019614 ! catechol-containing compound catabolic process -is_a: GO:0042402 ! cellular biogenic amine catabolic process +is_a: GO:0042402 ! biogenic amine catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:33567 ! catecholamine -relationship: has_primary_input CHEBI:33567 ! catecholamine +intersection_of: RO:0004009 CHEBI:33567 ! has primary input catecholamine +relationship: RO:0004009 CHEBI:33567 ! has primary input catecholamine [Term] id: GO:0042425 @@ -76207,8 +75818,8 @@ xref: MetaCyc:PWY-4762 is_a: GO:0019695 ! choline metabolic process is_a: GO:0042401 ! biogenic amine biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:15354 ! choline -relationship: has_primary_output CHEBI:15354 ! choline +intersection_of: RO:0004008 CHEBI:15354 ! has primary output choline +relationship: RO:0004008 CHEBI:15354 ! has primary output choline [Term] id: GO:0042426 @@ -76218,11 +75829,16 @@ def: "The chemical reactions and pathways resulting in the breakdown of choline synonym: "choline breakdown" EXACT [] synonym: "choline catabolism" EXACT [] synonym: "choline degradation" EXACT [] +xref: MetaCyc:CHOLINE-BETAINE-ANA-PWY {source="skos:narrowMatch"} +xref: MetaCyc:P542-PWY {source="skos:narrowMatch"} +xref: MetaCyc:PWY-3721 {source="skos:narrowMatch"} +xref: MetaCyc:PWY-7494 {source="skos:narrowMatch"} is_a: GO:0019695 ! choline metabolic process -is_a: GO:0042402 ! cellular biogenic amine catabolic process +is_a: GO:0042402 ! biogenic amine catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:15354 ! choline -relationship: has_primary_input CHEBI:15354 ! choline +intersection_of: RO:0004009 CHEBI:15354 ! has primary input choline +relationship: RO:0004009 CHEBI:15354 ! has primary input choline +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28527" xsd:anyURI [Term] id: GO:0042427 @@ -76237,8 +75853,8 @@ xref: Wikipedia:Serotonin is_a: GO:0009058 ! biosynthetic process is_a: GO:0042428 ! serotonin metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:350546 ! serotonin(1+) -relationship: has_primary_output CHEBI:350546 ! serotonin(1+) +intersection_of: RO:0004008 CHEBI:350546 ! has primary output serotonin(1+) +relationship: RO:0004008 CHEBI:350546 ! has primary output serotonin(1+) [Term] id: GO:0042428 @@ -76251,8 +75867,8 @@ is_a: GO:0042430 ! indole-containing compound metabolic process is_a: GO:0097164 ! ammonium ion metabolic process is_a: GO:1901160 ! primary amino compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:350546 ! serotonin(1+) -relationship: has_primary_input_or_output CHEBI:350546 ! serotonin(1+) +intersection_of: RO:0004007 CHEBI:350546 ! has primary input or output serotonin(1+) +relationship: RO:0004007 CHEBI:350546 ! has primary input or output serotonin(1+) [Term] id: GO:0042429 @@ -76265,8 +75881,8 @@ synonym: "serotonin degradation" EXACT [] is_a: GO:0009056 ! catabolic process is_a: GO:0042428 ! serotonin metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:350546 ! serotonin(1+) -relationship: has_primary_input CHEBI:350546 ! serotonin(1+) +intersection_of: RO:0004009 CHEBI:350546 ! has primary input serotonin(1+) +relationship: RO:0004009 CHEBI:350546 ! has primary input serotonin(1+) [Term] id: GO:0042430 @@ -76281,10 +75897,10 @@ synonym: "indole derivative metabolism" NARROW [] synonym: "indole-containing compound metabolism" EXACT [] synonym: "ketole metabolic process" EXACT [] synonym: "ketole metabolism" EXACT [] -is_a: GO:1901564 ! organonitrogen compound metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:24828 ! indoles -relationship: has_primary_input_or_output CHEBI:24828 ! indoles +intersection_of: RO:0004007 CHEBI:24828 ! has primary input or output indoles +relationship: RO:0004007 CHEBI:24828 ! has primary input or output indoles [Term] id: GO:0042435 @@ -76297,11 +75913,11 @@ synonym: "indole-containing compound anabolism" EXACT [] synonym: "indole-containing compound biosynthesis" EXACT [] synonym: "indole-containing compound formation" EXACT [] synonym: "indole-containing compound synthesis" EXACT [] +is_a: GO:0009058 ! biosynthetic process is_a: GO:0042430 ! indole-containing compound metabolic process -is_a: GO:1901566 ! organonitrogen compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:24828 ! indoles -relationship: has_primary_output CHEBI:24828 ! indoles +intersection_of: RO:0004008 CHEBI:24828 ! has primary output indoles +relationship: RO:0004008 CHEBI:24828 ! has primary output indoles [Term] id: GO:0042436 @@ -76313,11 +75929,11 @@ synonym: "indole derivative catabolism" EXACT [] synonym: "indole-containing compound breakdown" EXACT [] synonym: "indole-containing compound catabolism" EXACT [] synonym: "indole-containing compound degradation" EXACT [] +is_a: GO:0009056 ! catabolic process is_a: GO:0042430 ! indole-containing compound metabolic process -is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:24828 ! indoles -relationship: has_primary_input CHEBI:24828 ! indoles +intersection_of: RO:0004009 CHEBI:24828 ! has primary input indoles +relationship: RO:0004009 CHEBI:24828 ! has primary input indoles [Term] id: GO:0042440 @@ -76342,8 +75958,8 @@ is_a: GO:0030186 ! melatonin metabolic process is_a: GO:0042436 ! indole-containing compound catabolic process is_a: GO:0042447 ! hormone catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:16796 ! melatonin -relationship: has_primary_input CHEBI:16796 ! melatonin +intersection_of: RO:0004009 CHEBI:16796 ! has primary input melatonin +relationship: RO:0004009 CHEBI:16796 ! has primary input melatonin [Term] id: GO:0042445 @@ -76387,11 +76003,11 @@ namespace: biological_process def: "The chemical reactions and pathways involving progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants." [GOC:jl, PMID:11392024] synonym: "progesterone metabolism" EXACT [] is_a: GO:0008207 ! C21-steroid hormone metabolic process -is_a: GO:0042180 ! cellular ketone metabolic process +is_a: GO:0042180 ! ketone metabolic process is_a: GO:0120254 ! olefinic compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:17026 ! progesterone -relationship: has_primary_input_or_output CHEBI:17026 ! progesterone +intersection_of: RO:0004007 CHEBI:17026 ! has primary input or output progesterone +relationship: RO:0004007 CHEBI:17026 ! has primary input or output progesterone [Term] id: GO:0042451 @@ -76406,8 +76022,8 @@ is_a: GO:0009163 ! nucleoside biosynthetic process is_a: GO:0042278 ! purine nucleoside metabolic process is_a: GO:0072522 ! purine-containing compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26394 ! purine nucleoside -relationship: has_primary_output CHEBI:26394 ! purine nucleoside +intersection_of: RO:0004008 CHEBI:26394 ! has primary output purine nucleoside +relationship: RO:0004008 CHEBI:26394 ! has primary output purine nucleoside [Term] id: GO:0042454 @@ -76420,8 +76036,8 @@ synonym: "ribonucleoside degradation" EXACT [] is_a: GO:0009119 ! ribonucleoside metabolic process is_a: GO:0009164 ! nucleoside catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:18254 ! ribonucleoside -relationship: has_primary_input CHEBI:18254 ! ribonucleoside +intersection_of: RO:0004009 CHEBI:18254 ! has primary input ribonucleoside +relationship: RO:0004009 CHEBI:18254 ! has primary input ribonucleoside [Term] id: GO:0042455 @@ -76435,8 +76051,8 @@ synonym: "ribonucleoside synthesis" EXACT [] is_a: GO:0009119 ! ribonucleoside metabolic process is_a: GO:0009163 ! nucleoside biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:18254 ! ribonucleoside -relationship: has_primary_output CHEBI:18254 ! ribonucleoside +intersection_of: RO:0004008 CHEBI:18254 ! has primary output ribonucleoside +relationship: RO:0004008 CHEBI:18254 ! has primary output ribonucleoside [Term] id: GO:0042461 @@ -76447,9 +76063,9 @@ def: "Development of a photoreceptor, a cell that responds to incident electroma synonym: "photoreceptor morphogenesis" EXACT [] is_a: GO:0048666 ! neuron development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000210 ! photoreceptor cell +intersection_of: RO:0002296 CL:0000210 ! results in development of photoreceptor cell relationship: part_of GO:0046530 ! photoreceptor cell differentiation -relationship: results_in_development_of CL:0000210 ! photoreceptor cell +relationship: RO:0002296 CL:0000210 ! results in development of photoreceptor cell [Term] id: GO:0042462 @@ -76458,9 +76074,9 @@ namespace: biological_process def: "Development of a photoreceptor, a sensory cell in the eye that reacts to the presence of light. They usually contain a pigment that undergoes a chemical change when light is absorbed, thus stimulating a nerve." [GOC:jl, ISBN:0192800981] is_a: GO:0042461 ! photoreceptor cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000287 ! eye photoreceptor cell +intersection_of: RO:0002296 CL:0000287 ! results in development of eye photoreceptor cell relationship: part_of GO:0001754 ! eye photoreceptor cell differentiation -relationship: results_in_development_of CL:0000287 ! eye photoreceptor cell +relationship: RO:0002296 CL:0000287 ! results in development of eye photoreceptor cell [Term] id: GO:0042470 @@ -76473,8 +76089,8 @@ is_a: UBERON:0010313 ! neural crest-derived structure relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa relationship: never_in_taxon NCBITaxon:4895 ! Schizosaccharomyces relationship: never_in_taxon NCBITaxon:6237 {source="GOC:kmv"} ! Caenorhabditis -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa relationship: part_of CL:0000148 ! melanocyte +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa [Term] id: GO:0042471 @@ -76485,9 +76101,9 @@ synonym: "hearing organ morphogenesis" EXACT [] is_a: GO:0048562 ! embryonic organ morphogenesis is_a: GO:0090596 ! sensory organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001690 ! ear +intersection_of: RO:0002298 UBERON:0001690 ! results in morphogenesis of ear relationship: part_of GO:0043583 ! ear development -relationship: results_in_morphogenesis_of UBERON:0001690 ! ear +relationship: RO:0002298 UBERON:0001690 ! results in morphogenesis of ear [Term] id: GO:0042472 @@ -76496,10 +76112,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the inner ear are generated and organized. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively." [GOC:jl, ISBN:0192801023] is_a: GO:0048598 ! embryonic morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001846 ! internal ear +intersection_of: RO:0002298 UBERON:0001846 ! results in morphogenesis of internal ear relationship: part_of GO:0042471 ! ear morphogenesis relationship: part_of GO:0048839 ! inner ear development -relationship: results_in_morphogenesis_of UBERON:0001846 ! internal ear +relationship: RO:0002298 UBERON:0001846 ! results in morphogenesis of internal ear [Term] id: GO:0042473 @@ -76508,9 +76124,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the outer ear are generated and organized. The outer ear is the part of the ear external to the tympanum (eardrum). It consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull." [GOC:jl, ISBN:0192801023] is_a: GO:0048598 ! embryonic morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001691 ! external ear +intersection_of: RO:0002298 UBERON:0001691 ! results in morphogenesis of external ear relationship: part_of GO:0042471 ! ear morphogenesis -relationship: results_in_morphogenesis_of UBERON:0001691 ! external ear +relationship: RO:0002298 UBERON:0001691 ! results in morphogenesis of external ear [Term] id: GO:0042474 @@ -76519,9 +76135,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the middle ear are generated and organized. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window)." [GOC:jl, ISBN:0192801023] is_a: GO:0048598 ! embryonic morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001756 ! middle ear +intersection_of: RO:0002298 UBERON:0001756 ! results in morphogenesis of middle ear relationship: part_of GO:0042471 ! ear morphogenesis -relationship: results_in_morphogenesis_of UBERON:0001756 ! middle ear +relationship: RO:0002298 UBERON:0001756 ! results in morphogenesis of middle ear [Term] id: GO:0042475 @@ -76536,10 +76152,10 @@ synonym: "odontosis" BROAD [] synonym: "tooth development" BROAD [] is_a: GO:0042476 ! odontogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001091 ! calcareous tooth +intersection_of: RO:0002298 UBERON:0001091 ! results in morphogenesis of calcareous tooth relationship: in_taxon NCBITaxon:7711 {all_only="true"} ! Chordata -relationship: only_in_taxon NCBITaxon:7711 ! Chordata -relationship: results_in_morphogenesis_of UBERON:0001091 ! calcareous tooth +relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata +relationship: RO:0002298 UBERON:0001091 ! results in morphogenesis of calcareous tooth [Term] id: GO:0042476 @@ -76555,9 +76171,9 @@ synonym: "tooth morphogenesis" EXACT [] xref: Wikipedia:Odontogenesis is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003913 ! tooth-like structure +intersection_of: RO:0002298 UBERON:0003913 ! results in morphogenesis of tooth-like structure relationship: never_in_taxon NCBITaxon:8782 ! Aves -relationship: results_in_morphogenesis_of UBERON:0003913 ! tooth-like structure +relationship: RO:0002298 UBERON:0003913 ! results in morphogenesis of tooth-like structure [Term] id: GO:0042478 @@ -76568,9 +76184,9 @@ synonym: "regulation of eye photoreceptor development" EXACT [] is_a: GO:0046532 ! regulation of photoreceptor cell differentiation is_a: GO:0060284 ! regulation of cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042462 ! eye photoreceptor cell development -relationship: regulates GO:0042462 ! eye photoreceptor cell development -relationship: regulates GO:0046530 ! photoreceptor cell differentiation +intersection_of: RO:0002211 GO:0042462 ! regulates (processual) eye photoreceptor cell development +relationship: RO:0002211 GO:0042462 ! regulates (processual) eye photoreceptor cell development +relationship: RO:0002211 GO:0046530 ! regulates (processual) photoreceptor cell differentiation [Term] id: GO:0042479 @@ -76587,9 +76203,9 @@ is_a: GO:0010720 ! positive regulation of cell development is_a: GO:0042478 ! regulation of eye photoreceptor cell development is_a: GO:0046534 ! positive regulation of photoreceptor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042462 ! eye photoreceptor cell development -relationship: positively_regulates GO:0042462 ! eye photoreceptor cell development -relationship: positively_regulates GO:0046530 ! photoreceptor cell differentiation +intersection_of: RO:0002213 GO:0042462 ! positively regulates eye photoreceptor cell development +relationship: RO:0002213 GO:0042462 ! positively regulates eye photoreceptor cell development +relationship: RO:0002213 GO:0046530 ! positively regulates photoreceptor cell differentiation [Term] id: GO:0042480 @@ -76604,8 +76220,8 @@ synonym: "negative regulation of eye photoreceptor development" EXACT [] is_a: GO:0010721 ! negative regulation of cell development is_a: GO:0042478 ! regulation of eye photoreceptor cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042462 ! eye photoreceptor cell development -relationship: negatively_regulates GO:0042462 ! eye photoreceptor cell development +intersection_of: RO:0002212 GO:0042462 ! negatively regulates eye photoreceptor cell development +relationship: RO:0002212 GO:0042462 ! negatively regulates eye photoreceptor cell development [Term] id: GO:0042481 @@ -76617,8 +76233,8 @@ synonym: "regulation of odontogenesis of calcareous or chitinous tooth" NARROW [ synonym: "regulation of tooth development" EXACT [] is_a: GO:2000027 ! regulation of animal organ morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042476 ! odontogenesis -relationship: regulates GO:0042476 ! odontogenesis +intersection_of: RO:0002211 GO:0042476 ! regulates (processual) odontogenesis +relationship: RO:0002211 GO:0042476 ! regulates (processual) odontogenesis [Term] id: GO:0042482 @@ -76636,8 +76252,8 @@ synonym: "upregulation of odontogenesis" EXACT [] is_a: GO:0042481 ! regulation of odontogenesis is_a: GO:0110110 ! positive regulation of animal organ morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042476 ! odontogenesis -relationship: positively_regulates GO:0042476 ! odontogenesis +intersection_of: RO:0002213 GO:0042476 ! positively regulates odontogenesis +relationship: RO:0002213 GO:0042476 ! positively regulates odontogenesis [Term] id: GO:0042483 @@ -76654,8 +76270,8 @@ synonym: "negative regulation of tooth development" EXACT [] is_a: GO:0042481 ! regulation of odontogenesis is_a: GO:0110111 ! negative regulation of animal organ morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042476 ! odontogenesis -relationship: negatively_regulates GO:0042476 ! odontogenesis +intersection_of: RO:0002212 GO:0042476 ! negatively regulates odontogenesis +relationship: RO:0002212 GO:0042476 ! negatively regulates odontogenesis [Term] id: GO:0042487 @@ -76666,8 +76282,8 @@ synonym: "regulation of odontogenesis of dentine-containing teeth" EXACT [] synonym: "regulation of odontogenesis of dentine-containing tooth" EXACT [GOC:mah] is_a: GO:0042481 ! regulation of odontogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042475 ! odontogenesis of dentin-containing tooth -relationship: regulates GO:0042475 ! odontogenesis of dentin-containing tooth +intersection_of: RO:0002211 GO:0042475 ! regulates (processual) odontogenesis of dentin-containing tooth +relationship: RO:0002211 GO:0042475 ! regulates (processual) odontogenesis of dentin-containing tooth [Term] id: GO:0042488 @@ -76684,8 +76300,8 @@ synonym: "upregulation of odontogenesis" BROAD [] is_a: GO:0042482 ! positive regulation of odontogenesis is_a: GO:0042487 ! regulation of odontogenesis of dentin-containing tooth intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042475 ! odontogenesis of dentin-containing tooth -relationship: positively_regulates GO:0042475 ! odontogenesis of dentin-containing tooth +intersection_of: RO:0002213 GO:0042475 ! positively regulates odontogenesis of dentin-containing tooth +relationship: RO:0002213 GO:0042475 ! positively regulates odontogenesis of dentin-containing tooth [Term] id: GO:0042489 @@ -76702,8 +76318,8 @@ synonym: "negative regulation of odontogenesis of dentine-containing tooth" RELA is_a: GO:0042483 ! negative regulation of odontogenesis is_a: GO:0042487 ! regulation of odontogenesis of dentin-containing tooth intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042475 ! odontogenesis of dentin-containing tooth -relationship: negatively_regulates GO:0042475 ! odontogenesis of dentin-containing tooth +intersection_of: RO:0002212 GO:0042475 ! negatively regulates odontogenesis of dentin-containing tooth +relationship: RO:0002212 GO:0042475 ! negatively regulates odontogenesis of dentin-containing tooth [Term] id: GO:0042490 @@ -76723,8 +76339,8 @@ synonym: "auditory receptor cell differentiation" RELATED [] is_a: GO:0035315 ! hair cell differentiation is_a: GO:0060113 ! inner ear receptor cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000202 ! auditory hair cell -relationship: results_in_acquisition_of_features_of CL:0000202 ! auditory hair cell +intersection_of: RO:0002315 CL:0000202 ! results in acquisition of features of auditory hair cell +relationship: RO:0002315 CL:0000202 ! results in acquisition of features of auditory hair cell [Term] id: GO:0042537 @@ -76736,8 +76352,8 @@ synonym: "benzene and derivative metabolism" EXACT [] synonym: "benzene-containing compound metabolism" EXACT [GOC:mah] is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:22712 ! benzenes -relationship: has_primary_input_or_output CHEBI:22712 ! benzenes +intersection_of: RO:0004007 CHEBI:22712 ! has primary input or output benzenes +relationship: RO:0004007 CHEBI:22712 ! has primary input or output benzenes [Term] id: GO:0042551 @@ -76746,9 +76362,9 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for a neuron to attain its fully functional state." [GOC:dph, GOC:jl] is_a: GO:0048469 ! cell maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of CL:0000540 ! neuron +intersection_of: RO:0002299 CL:0000540 ! results in maturation of neuron relationship: part_of GO:0048666 ! neuron development -relationship: results_in_maturation_of CL:0000540 ! neuron +relationship: RO:0002299 CL:0000540 ! results in maturation of neuron [Term] id: GO:0042552 @@ -76848,8 +76464,8 @@ namespace: biological_process def: "Any process involved in the maintenance of an internal steady state of glucose within an organism or cell." [GOC:go_curators] is_a: GO:0033500 ! carbohydrate homeostasis intersection_of: GO:0048878 ! chemical homeostasis -intersection_of: regulates_levels_of CHEBI:4167 ! D-glucopyranose -relationship: regulates_levels_of CHEBI:4167 ! D-glucopyranose +intersection_of: RO:0002332 CHEBI:4167 ! regulates levels of D-glucopyranose +relationship: RO:0002332 CHEBI:4167 ! regulates levels of D-glucopyranose [Term] id: GO:0042600 @@ -76884,7 +76500,7 @@ def: "The cyclical phases of growth (anagen), regression (catagen), quiescence ( is_a: GO:0042303 ! molting cycle relationship: in_taxon NCBITaxon:40674 {all_only="true"} ! Mammalia relationship: never_in_taxon NCBITaxon:8782 ! Aves -relationship: only_in_taxon NCBITaxon:40674 ! Mammalia +relationship: RO:0002160 NCBITaxon:40674 ! only in taxon Mammalia [Term] id: GO:0042634 @@ -76893,8 +76509,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the cyclical phases of growth (anagen), regression (catagen), quiescence (telogen), and shedding (exogen) in the life of a hair." [GOC:go_curators, PMID:12230507] is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042633 ! hair cycle -relationship: regulates GO:0042633 ! hair cycle +intersection_of: RO:0002211 GO:0042633 ! regulates (processual) hair cycle +relationship: RO:0002211 GO:0042633 ! regulates (processual) hair cycle [Term] id: GO:0042635 @@ -76909,8 +76525,8 @@ synonym: "upregulation of hair cycle" EXACT [] is_a: GO:0042634 ! regulation of hair cycle is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042633 ! hair cycle -relationship: positively_regulates GO:0042633 ! hair cycle +intersection_of: RO:0002213 GO:0042633 ! positively regulates hair cycle +relationship: RO:0002213 GO:0042633 ! positively regulates hair cycle [Term] id: GO:0042636 @@ -76924,8 +76540,8 @@ synonym: "inhibition of hair cycle" NARROW [] is_a: GO:0042634 ! regulation of hair cycle is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042633 ! hair cycle -relationship: negatively_regulates GO:0042633 ! hair cycle +intersection_of: RO:0002212 GO:0042633 ! negatively regulates hair cycle +relationship: RO:0002212 GO:0042633 ! negatively regulates hair cycle [Term] id: GO:0042641 @@ -76934,7 +76550,7 @@ namespace: cellular_component def: "Any complex of actin, myosin, and accessory proteins." [GOC:go_curators] synonym: "actomyosin complex" EXACT [] synonym: "actomyosin structure" EXACT [] -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of GO:0005856 ! cytoskeleton relationship: part_of GO:0015629 ! actin cytoskeleton @@ -76945,8 +76561,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized features of a retinal cone cell." [GOC:go_curators] is_a: GO:0060219 ! camera-type eye photoreceptor cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000573 ! retinal cone cell -relationship: results_in_acquisition_of_features_of CL:0000573 ! retinal cone cell +intersection_of: RO:0002315 CL:0000573 ! results in acquisition of features of retinal cone cell +relationship: RO:0002315 CL:0000573 ! results in acquisition of features of retinal cone cell [Term] id: GO:0042692 @@ -76956,9 +76572,9 @@ def: "The process in which a relatively unspecialized cell acquires specialized synonym: "myogenesis" RELATED [] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000187 ! muscle cell +intersection_of: RO:0002315 CL:0000187 ! results in acquisition of features of muscle cell relationship: part_of GO:0061061 ! muscle structure development -relationship: results_in_acquisition_of_features_of CL:0000187 ! muscle cell +relationship: RO:0002315 CL:0000187 ! results in acquisition of features of muscle cell [Term] id: GO:0042698 @@ -76968,7 +76584,7 @@ def: "The type of sexual cycle seen in females, often with physiologic changes i is_a: GO:0048511 ! rhythmic process is_a: GO:0048609 ! multicellular organismal reproductive process relationship: in_taxon NCBITaxon:2759 {all_only="true"} ! Eukaryota -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota [Term] id: GO:0042701 @@ -76979,9 +76595,9 @@ is_a: GO:0022412 ! cellular process involved in reproduction in multicellular or is_a: GO:0022602 ! ovulation cycle process is_a: GO:0035929 ! steroid hormone secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:17026 ! progesterone -relationship: has_primary_input CHEBI:17026 ! progesterone +intersection_of: RO:0004009 CHEBI:17026 ! has primary input progesterone relationship: part_of GO:0001553 ! luteinization +relationship: RO:0004009 CHEBI:17026 ! has primary input progesterone [Term] id: GO:0042702 @@ -76991,9 +76607,9 @@ def: "The regrowth of the endometrium and blood vessels in the uterus following is_a: GO:0022602 ! ovulation cycle process is_a: GO:0048589 ! developmental growth intersection_of: GO:0040007 ! growth -intersection_of: results_in_growth_of UBERON:0000459 ! uterine wall +intersection_of: RO:0002343 UBERON:0000459 ! results in growth of uterine wall relationship: part_of GO:0001553 ! luteinization -relationship: results_in_growth_of UBERON:0000459 ! uterine wall +relationship: RO:0002343 UBERON:0000459 ! results in growth of uterine wall [Term] id: GO:0042713 @@ -77020,8 +76636,8 @@ synonym: "resistance response to pathogenic bacterium" NARROW [] is_a: GO:0009617 ! response to bacterium is_a: GO:0098542 ! defense response to other organism intersection_of: GO:0006952 ! defense response -intersection_of: has_primary_input NCBITaxon:2 ! Bacteria -relationship: has_primary_input NCBITaxon:2 ! Bacteria +intersection_of: RO:0004009 NCBITaxon:2 ! has primary input Bacteria +relationship: RO:0004009 NCBITaxon:2 ! has primary input Bacteria [Term] id: GO:0042745 @@ -77046,8 +76662,8 @@ def: "Any process that modulates the frequency, rate or extent of the circadian is_a: GO:0042752 ! regulation of circadian rhythm is_a: GO:0050795 ! regulation of behavior intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042745 ! circadian sleep/wake cycle -relationship: regulates GO:0042745 ! circadian sleep/wake cycle +intersection_of: RO:0002211 GO:0042745 ! regulates (processual) circadian sleep/wake cycle +relationship: RO:0002211 GO:0042745 ! regulates (processual) circadian sleep/wake cycle [Term] id: GO:0042752 @@ -77056,8 +76672,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours." [GOC:dph, GOC:jl, GOC:tb] is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007623 ! circadian rhythm -relationship: regulates GO:0007623 ! circadian rhythm +intersection_of: RO:0002211 GO:0007623 ! regulates (processual) circadian rhythm +relationship: RO:0002211 GO:0007623 ! regulates (processual) circadian rhythm [Term] id: GO:0042753 @@ -77072,8 +76688,8 @@ synonym: "upregulation of circadian rhythm" EXACT [] is_a: GO:0042752 ! regulation of circadian rhythm is_a: GO:0048518 ! positive regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007623 ! circadian rhythm -relationship: positively_regulates GO:0007623 ! circadian rhythm +intersection_of: RO:0002213 GO:0007623 ! positively regulates circadian rhythm +relationship: RO:0002213 GO:0007623 ! positively regulates circadian rhythm [Term] id: GO:0042754 @@ -77087,8 +76703,8 @@ synonym: "inhibition of circadian rhythm" NARROW [] is_a: GO:0042752 ! regulation of circadian rhythm is_a: GO:0048519 ! negative regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007623 ! circadian rhythm -relationship: negatively_regulates GO:0007623 ! circadian rhythm +intersection_of: RO:0002212 GO:0007623 ! negatively regulates circadian rhythm +relationship: RO:0002212 GO:0007623 ! negatively regulates circadian rhythm [Term] id: GO:0042762 @@ -77098,10 +76714,10 @@ def: "Any process that modulates the frequency, rate or extent of the chemical r synonym: "regulation of sulfur metabolism" EXACT [] synonym: "regulation of sulphur metabolic process" EXACT [] synonym: "regulation of sulphur metabolism" EXACT [] -is_a: GO:0031323 ! regulation of cellular metabolic process +is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006790 ! sulfur compound metabolic process -relationship: regulates GO:0006790 ! sulfur compound metabolic process +intersection_of: RO:0002211 GO:0006790 ! regulates (processual) sulfur compound metabolic process +relationship: RO:0002211 GO:0006790 ! regulates (processual) sulfur compound metabolic process [Term] id: GO:0042886 @@ -77111,8 +76727,8 @@ def: "The directed movement of an amide, any compound containing one, two, or th subset: goslim_pir is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:32988 ! amide -relationship: has_primary_input CHEBI:32988 ! amide +intersection_of: RO:0004009 CHEBI:32988 ! has primary input amide +relationship: RO:0004009 CHEBI:32988 ! has primary input amide [Term] id: GO:0042887 @@ -77122,19 +76738,9 @@ def: "Enables the transfer of an amide, any compound containing one, two, or thr synonym: "amine/amide/polyamine channel activity" NARROW [] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:32988 ! amide -relationship: has_primary_input CHEBI:32988 ! amide +intersection_of: RO:0004009 CHEBI:32988 ! has primary input amide relationship: part_of GO:0042886 ! amide transport - -[Term] -id: GO:0042921 -name: nuclear receptor-mediated glucocorticoid signaling pathway -namespace: biological_process -def: "A nuclear receptor-mediated signaling pathway initiated by a glucocorticoid binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription." [GOC:mah] -synonym: "glucocorticoid receptor signaling pathway" BROAD [] -synonym: "glucocorticoid receptor signalling pathway" BROAD [] -synonym: "intracellular glucocorticoid receptor signaling pathway" EXACT [] -is_a: GO:0031958 ! nuclear receptor-mediated corticosteroid signaling pathway +relationship: RO:0004009 CHEBI:32988 ! has primary input amide [Term] id: GO:0042923 @@ -77150,8 +76756,8 @@ namespace: biological_process def: "The directed movement of the D-enantiomer of an amino acid into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:jl, GOC:jsg, GOC:mah] is_a: GO:0006865 ! amino acid transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:59871 ! D-alpha-amino acid zwitterion -relationship: has_primary_input CHEBI:59871 ! D-alpha-amino acid zwitterion +intersection_of: RO:0004009 CHEBI:59871 ! has primary input D-alpha-amino acid zwitterion +relationship: RO:0004009 CHEBI:59871 ! has primary input D-alpha-amino acid zwitterion [Term] id: GO:0042943 @@ -77161,9 +76767,9 @@ def: "Enables the transfer of D-amino acids from one side of a membrane to the o synonym: "D-amino acid transporter activity" BROAD [] is_a: GO:0015171 ! amino acid transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:59871 ! D-alpha-amino acid zwitterion -relationship: has_primary_input CHEBI:59871 ! D-alpha-amino acid zwitterion +intersection_of: RO:0004009 CHEBI:59871 ! has primary input D-alpha-amino acid zwitterion relationship: part_of GO:0042940 ! D-amino acid transport +relationship: RO:0004009 CHEBI:59871 ! has primary input D-alpha-amino acid zwitterion [Term] id: GO:0042953 @@ -77174,8 +76780,8 @@ is_a: GO:0006810 ! transport is_a: GO:0044872 ! lipoprotein localization is_a: GO:0045184 ! establishment of protein localization intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:6495 ! lipoprotein -relationship: has_primary_input CHEBI:6495 ! lipoprotein +intersection_of: RO:0004009 CHEBI:6495 ! has primary input lipoprotein +relationship: RO:0004009 CHEBI:6495 ! has primary input lipoprotein [Term] id: GO:0042981 @@ -77187,9 +76793,9 @@ synonym: "apoptosis regulator activity" RELATED [] synonym: "regulation of apoptosis" NARROW [] is_a: GO:0043067 ! regulation of programmed cell death intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006915 ! apoptotic process +intersection_of: RO:0002211 GO:0006915 ! regulates (processual) apoptotic process relationship: never_in_taxon NCBITaxon:4896 ! Schizosaccharomyces pombe -relationship: regulates GO:0006915 ! apoptotic process +relationship: RO:0002211 GO:0006915 ! regulates (processual) apoptotic process [Term] id: GO:0042995 @@ -77206,7 +76812,7 @@ subset: goslim_prokaryote_ribbon synonym: "cell process" BROAD [] synonym: "cellular process" BROAD [] synonym: "cellular projection" EXACT [] -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of CL:0000000 ! cell [Term] @@ -77218,8 +76824,8 @@ is_a: GO:0051223 ! regulation of protein transport is_a: GO:0060627 ! regulation of vesicle-mediated transport is_a: GO:1903076 ! regulation of protein localization to plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0043001 ! Golgi to plasma membrane protein transport -relationship: regulates GO:0043001 ! Golgi to plasma membrane protein transport +intersection_of: RO:0002211 GO:0043001 ! regulates (processual) Golgi to plasma membrane protein transport +relationship: RO:0002211 GO:0043001 ! regulates (processual) Golgi to plasma membrane protein transport [Term] id: GO:0042997 @@ -77234,8 +76840,8 @@ is_a: GO:0042996 ! regulation of Golgi to plasma membrane protein transport is_a: GO:0051224 ! negative regulation of protein transport is_a: GO:1903077 ! negative regulation of protein localization to plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0043001 ! Golgi to plasma membrane protein transport -relationship: negatively_regulates GO:0043001 ! Golgi to plasma membrane protein transport +intersection_of: RO:0002212 GO:0043001 ! negatively regulates Golgi to plasma membrane protein transport +relationship: RO:0002212 GO:0043001 ! negatively regulates Golgi to plasma membrane protein transport [Term] id: GO:0042998 @@ -77251,8 +76857,8 @@ is_a: GO:0042996 ! regulation of Golgi to plasma membrane protein transport is_a: GO:0051222 ! positive regulation of protein transport is_a: GO:1903078 ! positive regulation of protein localization to plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0043001 ! Golgi to plasma membrane protein transport -relationship: positively_regulates GO:0043001 ! Golgi to plasma membrane protein transport +intersection_of: RO:0002213 GO:0043001 ! positively regulates Golgi to plasma membrane protein transport +relationship: RO:0002213 GO:0043001 ! positively regulates Golgi to plasma membrane protein transport [Term] id: GO:0043001 @@ -77264,12 +76870,12 @@ is_a: GO:0015031 ! protein transport is_a: GO:0061951 ! establishment of protein localization to plasma membrane is_a: GO:0072659 ! protein localization to plasma membrane intersection_of: GO:0015031 ! protein transport -intersection_of: has_target_end_location GO:0005886 ! plasma membrane -intersection_of: has_target_start_location GO:0005794 ! Golgi apparatus -intersection_of: process_has_causal_agent GO:0031982 ! vesicle -relationship: has_target_end_location GO:0005886 ! plasma membrane -relationship: has_target_start_location GO:0005794 ! Golgi apparatus -relationship: process_has_causal_agent GO:0031982 ! vesicle +intersection_of: RO:0002338 GO:0005794 ! has target start location Golgi apparatus +intersection_of: RO:0002339 GO:0005886 ! has target end location plasma membrane +intersection_of: RO:0002608 GO:0031982 ! process has causal agent vesicle +relationship: RO:0002338 GO:0005794 ! has target start location Golgi apparatus +relationship: RO:0002339 GO:0005886 ! has target end location plasma membrane +relationship: RO:0002608 GO:0031982 ! process has causal agent vesicle [Term] id: GO:0043005 @@ -77296,7 +76902,7 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the embryo over time, from zygote formation through a stage including a notochord and neural tube until birth or egg hatching." [GOC:mtg_sensu] is_a: GO:0009792 ! embryo development ending in birth or egg hatching relationship: in_taxon NCBITaxon:7711 {all_only="true"} ! Chordata -relationship: only_in_taxon NCBITaxon:7711 ! Chordata +relationship: RO:0002160 NCBITaxon:7711 ! only in taxon Chordata [Term] id: GO:0043010 @@ -77307,9 +76913,9 @@ alt_id: GO:0031075 def: "The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field." [GOC:go_curators, GOC:mtg_sensu] is_a: GO:0001654 ! eye development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000019 ! camera-type eye +intersection_of: RO:0002296 UBERON:0000019 ! results in development of camera-type eye relationship: never_in_taxon NCBITaxon:6656 ! Arthropoda -relationship: results_in_development_of UBERON:0000019 ! camera-type eye +relationship: RO:0002296 UBERON:0000019 ! results in development of camera-type eye [Term] id: GO:0043011 @@ -77321,8 +76927,8 @@ is_a: GO:0001773 ! myeloid dendritic cell activation is_a: GO:0002573 ! myeloid leukocyte differentiation is_a: GO:0097028 ! dendritic cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000782 ! myeloid dendritic cell -relationship: results_in_acquisition_of_features_of CL:0000782 ! myeloid dendritic cell +intersection_of: RO:0002315 CL:0000782 ! results in acquisition of features of myeloid dendritic cell +relationship: RO:0002315 CL:0000782 ! results in acquisition of features of myeloid dendritic cell [Term] id: GO:0043021 @@ -77335,8 +76941,8 @@ synonym: "ribonucleoprotein binding" EXACT [GOC:bf, GOC:vk] synonym: "RNP binding" EXACT [] is_a: GO:0044877 ! protein-containing complex binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input GO:1990904 ! ribonucleoprotein complex -relationship: has_primary_input GO:1990904 ! ribonucleoprotein complex +intersection_of: RO:0004009 GO:1990904 ! has primary input ribonucleoprotein complex +relationship: RO:0004009 GO:1990904 ! has primary input ribonucleoprotein complex [Term] id: GO:0043022 @@ -77347,8 +76953,8 @@ def: "Binding to a ribosome." [GOC:go_curators] synonym: "ribosome receptor activity" NARROW [] is_a: GO:0043021 ! ribonucleoprotein complex binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input GO:0005840 ! ribosome -relationship: has_primary_input GO:0005840 ! ribosome +intersection_of: RO:0004009 GO:0005840 ! has primary input ribosome +relationship: RO:0004009 GO:0005840 ! has primary input ribosome [Term] id: GO:0043025 @@ -77378,8 +76984,8 @@ synonym: "T-cell homeostasis" EXACT [] synonym: "T-lymphocyte homeostasis" EXACT [] is_a: GO:0002260 ! lymphocyte homeostasis intersection_of: GO:0048872 ! homeostasis of number of cells -intersection_of: acts_on_population_of CL:0000084 ! T cell -relationship: acts_on_population_of CL:0000084 ! T cell +intersection_of: RO:0012003 CL:0000084 ! acts on population of T cell +relationship: RO:0012003 CL:0000084 ! acts on population of T cell [Term] id: GO:0043030 @@ -77389,8 +76995,8 @@ def: "Any process that modulates the frequency or rate of macrophage activation. synonym: "regulation of macrophage polarization" EXACT [] is_a: GO:0002694 ! regulation of leukocyte activation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042116 ! macrophage activation -relationship: regulates GO:0042116 ! macrophage activation +intersection_of: RO:0002211 GO:0042116 ! regulates (processual) macrophage activation +relationship: RO:0002211 GO:0042116 ! regulates (processual) macrophage activation [Term] id: GO:0043031 @@ -77405,8 +77011,8 @@ synonym: "negative regulation of macrophage polarization" EXACT [] is_a: GO:0002695 ! negative regulation of leukocyte activation is_a: GO:0043030 ! regulation of macrophage activation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042116 ! macrophage activation -relationship: negatively_regulates GO:0042116 ! macrophage activation +intersection_of: RO:0002212 GO:0042116 ! negatively regulates macrophage activation +relationship: RO:0002212 GO:0042116 ! negatively regulates macrophage activation [Term] id: GO:0043032 @@ -77422,8 +77028,8 @@ synonym: "upregulation of macrophage activation" EXACT [] is_a: GO:0002696 ! positive regulation of leukocyte activation is_a: GO:0043030 ! regulation of macrophage activation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042116 ! macrophage activation -relationship: positively_regulates GO:0042116 ! macrophage activation +intersection_of: RO:0002213 GO:0042116 ! positively regulates macrophage activation +relationship: RO:0002213 GO:0042116 ! positively regulates macrophage activation [Term] id: GO:0043043 @@ -77437,8 +77043,8 @@ synonym: "peptide synthesis" EXACT [] is_a: GO:0006518 ! peptide metabolic process is_a: GO:0009058 ! biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:60466 ! peptide zwitterion -relationship: has_primary_output CHEBI:60466 ! peptide zwitterion +intersection_of: RO:0004008 CHEBI:60466 ! has primary output peptide zwitterion +relationship: RO:0004008 CHEBI:60466 ! has primary output peptide zwitterion [Term] id: GO:0043049 @@ -77447,9 +77053,9 @@ namespace: biological_process def: "The initial developmental process that will lead to the formation of the vertebrate inner ear. The otic placode forms as a thickening of the head ectoderm adjacent to the developing hindbrain." [GOC:go_curators, PMID:12668634] is_a: GO:0060788 ! ectodermal placode formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003069 ! otic placode +intersection_of: RO:0002297 UBERON:0003069 ! results in formation of anatomical entity otic placode relationship: part_of GO:0030916 ! otic vesicle formation -relationship: results_in_formation_of_anatomical_entity UBERON:0003069 ! otic placode +relationship: RO:0002297 UBERON:0003069 ! results in formation of anatomical entity otic placode [Term] id: GO:0043062 @@ -77462,8 +77068,8 @@ synonym: "extracellular structure organisation" EXACT [] synonym: "extracellular structure organization and biogenesis" EXACT [GOC:dph, GOC:jl, GOC:mah] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005576 ! extracellular region -relationship: results_in_organization_of GO:0005576 ! extracellular region +intersection_of: RO:0002592 GO:0005576 ! results in organization of extracellular region +relationship: RO:0002592 GO:0005576 ! results in organization of extracellular region [Term] id: GO:0043065 @@ -77482,8 +77088,8 @@ synonym: "upregulation of apoptosis" EXACT [] is_a: GO:0042981 ! regulation of apoptotic process is_a: GO:0043068 ! positive regulation of programmed cell death intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006915 ! apoptotic process -relationship: positively_regulates GO:0006915 ! apoptotic process +intersection_of: RO:0002213 GO:0006915 ! positively regulates apoptotic process +relationship: RO:0002213 GO:0006915 ! positively regulates apoptotic process [Term] id: GO:0043066 @@ -77503,9 +77109,9 @@ synonym: "pro-survival" RELATED [] is_a: GO:0042981 ! regulation of apoptotic process is_a: GO:0043069 ! negative regulation of programmed cell death intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006915 ! apoptotic process -relationship: negatively_regulates GO:0006915 ! apoptotic process +intersection_of: RO:0002212 GO:0006915 ! negatively regulates apoptotic process relationship: never_in_taxon NCBITaxon:4896 ! Schizosaccharomyces pombe +relationship: RO:0002212 GO:0006915 ! negatively regulates apoptotic process [Term] id: GO:0043067 @@ -77516,8 +77122,8 @@ def: "Any process that modulates the frequency, rate or extent of programmed cel synonym: "regulation of non-apoptotic programmed cell death" NARROW [] is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0012501 ! programmed cell death -relationship: regulates GO:0012501 ! programmed cell death +intersection_of: RO:0002211 GO:0012501 ! regulates (processual) programmed cell death +relationship: RO:0002211 GO:0012501 ! regulates (processual) programmed cell death [Term] id: GO:0043068 @@ -77534,8 +77140,8 @@ synonym: "upregulation of programmed cell death" EXACT [] is_a: GO:0043067 ! regulation of programmed cell death is_a: GO:0048522 ! positive regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0012501 ! programmed cell death -relationship: positively_regulates GO:0012501 ! programmed cell death +intersection_of: RO:0002213 GO:0012501 ! positively regulates programmed cell death +relationship: RO:0002213 GO:0012501 ! positively regulates programmed cell death [Term] id: GO:0043069 @@ -77551,8 +77157,8 @@ synonym: "negative regulation of non-apoptotic programmed cell death" NARROW [] is_a: GO:0043067 ! regulation of programmed cell death is_a: GO:0048523 ! negative regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0012501 ! programmed cell death -relationship: negatively_regulates GO:0012501 ! programmed cell death +intersection_of: RO:0002212 GO:0012501 ! negatively regulates programmed cell death +relationship: RO:0002212 GO:0012501 ! negatively regulates programmed cell death [Term] id: GO:0043073 @@ -77580,7 +77186,7 @@ name: positive regulation of catalytic activity namespace: biological_process alt_id: GO:0048554 def: "Any process that activates or increases the activity of an enzyme." [GOC:ebc, GOC:jl, GOC:tb, GOC:vw] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate subset: goslim_chembl synonym: "activation of enzyme activity" NARROW [] synonym: "activation of metalloenzyme activity" NARROW [] @@ -77597,8 +77203,8 @@ synonym: "upregulation of metalloenzyme activity" NARROW [] is_a: GO:0044093 ! positive regulation of molecular function is_a: GO:0050790 ! regulation of catalytic activity intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003824 ! catalytic activity -relationship: positively_regulates GO:0003824 ! catalytic activity +intersection_of: RO:0002213 GO:0003824 ! positively regulates catalytic activity +relationship: RO:0002213 GO:0003824 ! positively regulates catalytic activity [Term] id: GO:0043086 @@ -77606,7 +77212,7 @@ name: negative regulation of catalytic activity namespace: biological_process alt_id: GO:0048553 def: "Any process that stops or reduces the activity of an enzyme." [GOC:ebc, GOC:jl, GOC:tb, GOC:vw] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "down regulation of enzyme activity" EXACT [] synonym: "down regulation of metalloenzyme activity" NARROW [] synonym: "down-regulation of enzyme activity" EXACT [] @@ -77620,8 +77226,8 @@ synonym: "negative regulation of metalloenzyme activity" NARROW [] is_a: GO:0044092 ! negative regulation of molecular function is_a: GO:0050790 ! regulation of catalytic activity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003824 ! catalytic activity -relationship: negatively_regulates GO:0003824 ! catalytic activity +intersection_of: RO:0002212 GO:0003824 ! negatively regulates catalytic activity +relationship: RO:0002212 GO:0003824 ! negatively regulates catalytic activity [Term] id: GO:0043114 @@ -77674,8 +77280,8 @@ def: "A process in which force is generated within smooth muscle tissue, resulti is_a: GO:0006939 ! smooth muscle contraction is_a: GO:0022600 ! digestive system process intersection_of: GO:0006939 ! smooth muscle contraction -intersection_of: occurs_in UBERON:0001046 ! hindgut -relationship: occurs_in UBERON:0001046 ! hindgut +intersection_of: BFO:0000066 UBERON:0001046 ! occurs in hindgut +relationship: BFO:0000066 UBERON:0001046 ! occurs in hindgut [Term] id: GO:0043134 @@ -77685,8 +77291,8 @@ def: "Any process that modulates the frequency, rate or extent of muscle contrac is_a: GO:0006940 ! regulation of smooth muscle contraction is_a: GO:0044058 ! regulation of digestive system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0043133 ! hindgut contraction -relationship: regulates GO:0043133 ! hindgut contraction +intersection_of: RO:0002211 GO:0043133 ! regulates (processual) hindgut contraction +relationship: RO:0002211 GO:0043133 ! regulates (processual) hindgut contraction [Term] id: GO:0043143 @@ -77717,8 +77323,8 @@ subset: goslim_yeast synonym: "atom binding" RELATED [] is_a: GO:0036094 ! small molecule binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:24870 ! ion -relationship: has_primary_input CHEBI:24870 ! ion +intersection_of: RO:0004009 CHEBI:24870 ! has primary input ion +relationship: RO:0004009 CHEBI:24870 ! has primary input ion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI [Term] @@ -77728,8 +77334,8 @@ namespace: molecular_function def: "Binding to an anion, a charged atom or group of atoms with a net negative charge." [GOC:jl] is_a: GO:0043167 ! ion binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:22563 ! anion -relationship: has_primary_input CHEBI:22563 ! anion +intersection_of: RO:0004009 CHEBI:22563 ! has primary input anion +relationship: RO:0004009 CHEBI:22563 ! has primary input anion [Term] id: GO:0043169 @@ -77738,8 +77344,8 @@ namespace: molecular_function def: "Binding to a cation, a charged atom or group of atoms with a net positive charge." [GOC:jl] is_a: GO:0043167 ! ion binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:36916 ! cation -relationship: has_primary_input CHEBI:36916 ! cation +intersection_of: RO:0004009 CHEBI:36916 ! has primary input cation +relationship: RO:0004009 CHEBI:36916 ! has primary input cation [Term] id: GO:0043170 @@ -77757,8 +77363,8 @@ synonym: "multicellular organismal macromolecule metabolic process" NARROW [] synonym: "organismal macromolecule metabolism" EXACT [] is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:33694 ! biomacromolecule -relationship: has_primary_input_or_output CHEBI:33694 ! biomacromolecule +intersection_of: RO:0004007 CHEBI:33694 ! has primary input or output biomacromolecule +relationship: RO:0004007 CHEBI:33694 ! has primary input or output biomacromolecule property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI [Term] @@ -77772,8 +77378,8 @@ synonym: "peptide degradation" EXACT [] is_a: GO:0006518 ! peptide metabolic process is_a: GO:0044248 ! cellular catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:60466 ! peptide zwitterion -relationship: has_primary_input CHEBI:60466 ! peptide zwitterion +intersection_of: RO:0004009 CHEBI:60466 ! has primary input peptide zwitterion +relationship: RO:0004009 CHEBI:60466 ! has primary input peptide zwitterion [Term] id: GO:0043176 @@ -77783,8 +77389,8 @@ def: "Binding to an amine, a weakly basic organic compound that contains an amin subset: goslim_pir is_a: GO:0005488 ! binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:32952 ! amine -relationship: has_primary_input CHEBI:32952 ! amine +intersection_of: RO:0004009 CHEBI:32952 ! has primary input amine +relationship: RO:0004009 CHEBI:32952 ! has primary input amine [Term] id: GO:0043177 @@ -77793,8 +77399,8 @@ namespace: molecular_function def: "Binding to an organic acid, any acidic compound containing carbon in covalent linkage." [GOC:jl, ISBN:0198506732] is_a: GO:0036094 ! small molecule binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:64709 ! organic acid -relationship: has_primary_input CHEBI:64709 ! organic acid +intersection_of: RO:0004009 CHEBI:64709 ! has primary input organic acid +relationship: RO:0004009 CHEBI:64709 ! has primary input organic acid [Term] id: GO:0043178 @@ -77804,8 +77410,8 @@ def: "Binding to an alcohol, any of a class of alkyl compounds containing a hydr subset: goslim_pir is_a: GO:0036094 ! small molecule binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:30879 ! alcohol -relationship: has_primary_input CHEBI:30879 ! alcohol +intersection_of: RO:0004009 CHEBI:30879 ! has primary input alcohol +relationship: RO:0004009 CHEBI:30879 ! has primary input alcohol [Term] id: GO:0043184 @@ -77819,8 +77425,8 @@ synonym: "VEGF receptor 2 binding" EXACT [] synonym: "VEGFR 2 binding" EXACT [] is_a: GO:0005172 ! vascular endothelial growth factor receptor binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input PR:000002112 ! vascular endothelial growth factor receptor 2 -relationship: has_primary_input PR:000002112 ! vascular endothelial growth factor receptor 2 +intersection_of: RO:0004009 PR:000002112 ! has primary input vascular endothelial growth factor receptor 2 +relationship: RO:0004009 PR:000002112 ! has primary input vascular endothelial growth factor receptor 2 [Term] id: GO:0043199 @@ -77830,8 +77436,8 @@ def: "Binding to sulfate, SO4(2-), a negatively charged small molecule." [GOC:ml is_a: GO:0043168 ! anion binding is_a: GO:1901681 ! sulfur compound binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:16189 ! sulfate -relationship: has_primary_input CHEBI:16189 ! sulfate +intersection_of: RO:0004009 CHEBI:16189 ! has primary input sulfate +relationship: RO:0004009 CHEBI:16189 ! has primary input sulfate [Term] id: GO:0043200 @@ -77842,8 +77448,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to amino acid stimulus" EXACT [GOC:dos] is_a: GO:0001101 ! response to acid chemical intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion -relationship: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion +relationship: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion [Term] id: GO:0043207 @@ -77861,8 +77467,8 @@ def: "Binding to glycosphingolipid, a compound with residues of sphingoid and at is_a: GO:0046625 ! sphingolipid binding is_a: GO:0051861 ! glycolipid binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:24402 ! glycosphingolipid -relationship: has_primary_input CHEBI:24402 ! glycosphingolipid +intersection_of: RO:0004009 CHEBI:24402 ! has primary input glycosphingolipid +relationship: RO:0004009 CHEBI:24402 ! has primary input glycosphingolipid [Term] id: GO:0043209 @@ -77875,12 +77481,12 @@ synonym: "Schwann cell myelin sheath" NARROW [] xref: FMA:62983 xref: NIF_Subcellular:sao593830697 xref: Wikipedia:Myelin -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa relationship: part_of CL:0000000 ! cell relationship: part_of CL:0000125 ! glial cell +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa [Term] id: GO:0043226 @@ -77894,44 +77500,53 @@ subset: goslim_prokaryote subset: goslim_prokaryote_ribbon xref: NIF_Subcellular:sao1539965131 xref: Wikipedia:Organelle -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure [Term] id: GO:0043227 name: membrane-bounded organelle namespace: cellular_component def: "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane." [GOC:go_curators] +subset: gocheck_do_not_annotate synonym: "membrane-enclosed organelle" EXACT [] xref: NIF_Subcellular:sao414196390 is_a: GO:0043226 ! organelle intersection_of: GO:0043226 ! organelle intersection_of: has_part GO:0016020 ! membrane -disjoint_from: GO:0043228 ! non-membrane-bounded organelle +disjoint_from: GO:0043228 ! membraneless organelle relationship: has_part GO:0016020 ! membrane +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28153" xsd:anyURI [Term] id: GO:0043228 -name: non-membrane-bounded organelle +name: membraneless organelle namespace: cellular_component def: "Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane. Includes ribosomes, the cytoskeleton and chromosomes." [GOC:go_curators] +subset: gocheck_do_not_annotate subset: goslim_mouse synonym: "biological condensate" RELATED [] +synonym: "membrane-less organelle" EXACT [] +synonym: "non-membrane-bounded organelle" EXACT [] synonym: "non-membrane-enclosed organelle" EXACT [] xref: NIF_Subcellular:sao1456184038 is_a: GO:0043226 ! organelle property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/21881" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28153" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29106" xsd:anyURI [Term] id: GO:0043229 name: intracellular organelle namespace: cellular_component def: "Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." [GOC:go_curators] +subset: gocheck_do_not_annotate subset: goslim_pir is_a: GO:0043226 ! organelle intersection_of: GO:0043226 ! organelle intersection_of: part_of GO:0005622 ! intracellular anatomical structure disjoint_from: GO:0043230 ! extracellular organelle relationship: part_of GO:0005622 ! intracellular anatomical structure +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28153" xsd:anyURI [Term] id: GO:0043230 @@ -77959,16 +77574,18 @@ relationship: part_of GO:0005622 ! intracellular anatomical structure [Term] id: GO:0043232 -name: intracellular non-membrane-bounded organelle +name: intracellular membraneless organelle namespace: cellular_component def: "Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes, the cytoskeleton and chromosomes." [GOC:go_curators] subset: goslim_pir +synonym: "intracellular non-membrane-bounded organelle" EXACT [] synonym: "intracellular non-membrane-enclosed organelle" EXACT [] -is_a: GO:0043228 ! non-membrane-bounded organelle +is_a: GO:0043228 ! membraneless organelle is_a: GO:0043229 ! intracellular organelle -intersection_of: GO:0043228 ! non-membrane-bounded organelle +intersection_of: GO:0043228 ! membraneless organelle intersection_of: part_of GO:0005622 ! intracellular anatomical structure relationship: part_of GO:0005622 ! intracellular anatomical structure +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29106" xsd:anyURI [Term] id: GO:0043233 @@ -78005,8 +77622,8 @@ synonym: "negative regulation of protein complex disassembly" RELATED [] is_a: GO:0043244 ! regulation of protein-containing complex disassembly is_a: GO:0051129 ! negative regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032984 ! protein-containing complex disassembly -relationship: negatively_regulates GO:0032984 ! protein-containing complex disassembly +intersection_of: RO:0002212 GO:0032984 ! negatively regulates protein-containing complex disassembly +relationship: RO:0002212 GO:0032984 ! negatively regulates protein-containing complex disassembly [Term] id: GO:0043243 @@ -78022,8 +77639,8 @@ synonym: "upregulation of protein complex disassembly" EXACT [] is_a: GO:0043244 ! regulation of protein-containing complex disassembly is_a: GO:0051130 ! positive regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032984 ! protein-containing complex disassembly -relationship: positively_regulates GO:0032984 ! protein-containing complex disassembly +intersection_of: RO:0002213 GO:0032984 ! positively regulates protein-containing complex disassembly +relationship: RO:0002213 GO:0032984 ! positively regulates protein-containing complex disassembly [Term] id: GO:0043244 @@ -78033,8 +77650,8 @@ def: "Any process that modulates the frequency, rate or extent of protein comple synonym: "regulation of protein complex disassembly" RELATED [] is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032984 ! protein-containing complex disassembly -relationship: regulates GO:0032984 ! protein-containing complex disassembly +intersection_of: RO:0002211 GO:0032984 ! regulates (processual) protein-containing complex disassembly +relationship: RO:0002211 GO:0032984 ! regulates (processual) protein-containing complex disassembly [Term] id: GO:0043249 @@ -78045,9 +77662,9 @@ synonym: "RBC maturation" EXACT [CL:0000232] synonym: "red blood cell maturation" EXACT [CL:0000232] is_a: GO:0048469 ! cell maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of CL:0000232 ! erythrocyte +intersection_of: RO:0002299 CL:0000232 ! results in maturation of erythrocyte relationship: part_of GO:0048821 ! erythrocyte development -relationship: results_in_maturation_of CL:0000232 ! erythrocyte +relationship: RO:0002299 CL:0000232 ! results in maturation of erythrocyte [Term] id: GO:0043254 @@ -78058,9 +77675,9 @@ synonym: "regulation of protein complex assembly" RELATED [] is_a: GO:0044087 ! regulation of cellular component biogenesis is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0065003 ! protein-containing complex assembly -relationship: regulates GO:0044085 ! cellular component biogenesis -relationship: regulates GO:0065003 ! protein-containing complex assembly +intersection_of: RO:0002211 GO:0065003 ! regulates (processual) protein-containing complex assembly +relationship: RO:0002211 GO:0044085 ! regulates (processual) cellular component biogenesis +relationship: RO:0002211 GO:0065003 ! regulates (processual) protein-containing complex assembly [Term] id: GO:0043255 @@ -78074,20 +77691,79 @@ synonym: "regulation of carbohydrate synthesis" EXACT [] is_a: GO:0006109 ! regulation of carbohydrate metabolic process is_a: GO:0009889 ! regulation of biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0016051 ! carbohydrate biosynthetic process -relationship: regulates GO:0016051 ! carbohydrate biosynthetic process +intersection_of: RO:0002211 GO:0016051 ! regulates (processual) carbohydrate biosynthetic process +relationship: RO:0002211 GO:0016051 ! regulates (processual) carbohydrate biosynthetic process [Term] id: GO:0043264 -name: extracellular non-membrane-bounded organelle +name: extracellular membraneless organelle namespace: cellular_component def: "Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring outside the cell." [GOC:jl] +synonym: "extracellular non-membrane-bounded organelle" EXACT [] synonym: "extracellular non-membrane-enclosed organelle" EXACT [] -is_a: GO:0043228 ! non-membrane-bounded organelle +is_a: GO:0043228 ! membraneless organelle is_a: GO:0043230 ! extracellular organelle -intersection_of: GO:0043228 ! non-membrane-bounded organelle +intersection_of: GO:0043228 ! membraneless organelle intersection_of: part_of GO:0005576 ! extracellular region relationship: part_of GO:0005576 ! extracellular region +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29106" xsd:anyURI + +[Term] +id: GO:0043266 +name: regulation of potassium ion transport +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:jl] +synonym: "regulation of K+ conductance" NARROW [] +synonym: "regulation of K+ transport" EXACT [] +synonym: "regulation of potassium conductance" NARROW [] +synonym: "regulation of potassium ion conductance" NARROW [] +synonym: "regulation of potassium transport" EXACT [] +is_a: GO:0010959 ! regulation of metal ion transport +intersection_of: GO:0065007 ! biological regulation +intersection_of: RO:0002211 GO:0006813 ! regulates (processual) potassium ion transport +relationship: RO:0002211 GO:0006813 ! regulates (processual) potassium ion transport + +[Term] +id: GO:0043267 +name: negative regulation of potassium ion transport +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:jl] +synonym: "down regulation of potassium ion transport" EXACT [] +synonym: "down-regulation of potassium ion transport" EXACT [] +synonym: "downregulation of potassium ion transport" EXACT [] +synonym: "inhibition of potassium ion transport" NARROW [] +synonym: "negative regulation of K+ transport" EXACT [] +synonym: "negative regulation of potassium ion conductance" NARROW [] +synonym: "negative regulation of potassium transport" EXACT [] +synonym: "regulation of K+ conductance" NARROW [] +synonym: "regulation of potassium conductance" NARROW [] +synonym: "transmembrane conductance regulator activity" RELATED [] +is_a: GO:0043266 ! regulation of potassium ion transport +is_a: GO:0043271 ! negative regulation of monoatomic ion transport +intersection_of: GO:0065007 ! biological regulation +intersection_of: RO:0002212 GO:0006813 ! negatively regulates potassium ion transport +relationship: RO:0002212 GO:0006813 ! negatively regulates potassium ion transport + +[Term] +id: GO:0043268 +name: positive regulation of potassium ion transport +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:jl] +synonym: "activation of potassium ion transport" NARROW [] +synonym: "positive regulation of K+ conductance" NARROW [] +synonym: "positive regulation of K+ transport" EXACT [] +synonym: "positive regulation of potassium conductance" NARROW [] +synonym: "positive regulation of potassium ion conductance" NARROW [] +synonym: "positive regulation of potassium transport" EXACT [] +synonym: "stimulation of potassium ion transport" NARROW [] +synonym: "up regulation of potassium ion transport" EXACT [] +synonym: "up-regulation of potassium ion transport" EXACT [] +synonym: "upregulation of potassium ion transport" EXACT [] +is_a: GO:0043266 ! regulation of potassium ion transport +is_a: GO:0043270 ! positive regulation of monoatomic ion transport +intersection_of: GO:0065007 ! biological regulation +intersection_of: RO:0002213 GO:0006813 ! positively regulates potassium ion transport +relationship: RO:0002213 GO:0006813 ! positively regulates potassium ion transport [Term] id: GO:0043269 @@ -78097,8 +77773,8 @@ def: "Any process that modulates the frequency, rate or extent of the directed m synonym: "regulation of ion transport" BROAD [] is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006811 ! monoatomic ion transport -relationship: regulates GO:0006811 ! monoatomic ion transport +intersection_of: RO:0002211 GO:0006811 ! regulates (processual) monoatomic ion transport +relationship: RO:0002211 GO:0006811 ! regulates (processual) monoatomic ion transport [Term] id: GO:0043270 @@ -78113,8 +77789,8 @@ synonym: "upregulation of ion transport" EXACT [] is_a: GO:0043269 ! regulation of monoatomic ion transport is_a: GO:0051050 ! positive regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006811 ! monoatomic ion transport -relationship: positively_regulates GO:0006811 ! monoatomic ion transport +intersection_of: RO:0002213 GO:0006811 ! positively regulates monoatomic ion transport +relationship: RO:0002213 GO:0006811 ! positively regulates monoatomic ion transport [Term] id: GO:0043271 @@ -78129,18 +77805,18 @@ synonym: "negative regulation of ion transport" BROAD [] is_a: GO:0043269 ! regulation of monoatomic ion transport is_a: GO:0051051 ! negative regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006811 ! monoatomic ion transport -relationship: negatively_regulates GO:0006811 ! monoatomic ion transport +intersection_of: RO:0002212 GO:0006811 ! negatively regulates monoatomic ion transport +relationship: RO:0002212 GO:0006811 ! negatively regulates monoatomic ion transport [Term] id: GO:0043279 name: response to alkaloid namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkaloid stimulus. Alkaloids are a large group of nitrogenous substances found in naturally in plants, many of which have extracts that are pharmacologically active." [GOC:jl] -is_a: GO:0010243 ! response to organonitrogen compound +is_a: GO:1901698 ! response to nitrogen compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:22315 ! alkaloid -relationship: has_primary_input CHEBI:22315 ! alkaloid +intersection_of: RO:0004009 CHEBI:22315 ! has primary input alkaloid +relationship: RO:0004009 CHEBI:22315 ! has primary input alkaloid [Term] id: GO:0043282 @@ -78149,9 +77825,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the pharyngeal muscle over time, from its formation to the mature structure. A pharyngeal muscle is any muscle that forms part of the pharynx." [GOC:go_curators] is_a: GO:0007517 ! muscle organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000933 ! chordate pharyngeal muscle +intersection_of: RO:0002296 UBERON:0000933 ! results in development of chordate pharyngeal muscle relationship: part_of GO:0160093 ! chordate pharynx development -relationship: results_in_development_of UBERON:0000933 ! chordate pharyngeal muscle +relationship: RO:0002296 UBERON:0000933 ! results in development of chordate pharyngeal muscle property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/18285" xsd:anyURI [Term] @@ -78160,13 +77836,13 @@ name: contractile muscle fiber namespace: cellular_component def: "Fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle." [GOC:go_curators, ISBN:0815316194] synonym: "contractile fibre" EXACT [] -is_a: GO:0043232 ! intracellular non-membrane-bounded organelle +is_a: GO:0043232 ! intracellular membraneless organelle is_a: GO:0099512 ! supramolecular fiber is_a: UBERON:0004120 ! mesoderm-derived structure relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: part_of CL:0000187 ! muscle cell relationship: part_of GO:0005737 ! cytoplasm +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27281" xsd:anyURI [Term] @@ -78186,8 +77862,8 @@ def: "The formation of an apical junction, a functional unit located near the ce synonym: "apical junction complex assembly" EXACT [GOC:mah] is_a: GO:0007043 ! cell-cell junction assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0043296 ! apical junction complex -relationship: results_in_assembly_of GO:0043296 ! apical junction complex +intersection_of: RO:0002588 GO:0043296 ! results in assembly of apical junction complex +relationship: RO:0002588 GO:0043296 ! results in assembly of apical junction complex [Term] id: GO:0043299 @@ -78202,10 +77878,10 @@ is_a: GO:0002252 ! immune effector process is_a: GO:0045055 ! regulated exocytosis is_a: GO:0051649 ! establishment of localization in cell intersection_of: GO:0045055 ! regulated exocytosis -intersection_of: occurs_in CL:0000738 ! leukocyte +intersection_of: BFO:0000066 CL:0000738 ! occurs in leukocyte +relationship: BFO:0000066 CL:0000738 ! occurs in leukocyte relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: occurs_in CL:0000738 ! leukocyte -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata [Term] id: GO:0043300 @@ -78219,8 +77895,8 @@ synonym: "regulation of leukocyte granule exocytosis" EXACT [] is_a: GO:0002697 ! regulation of immune effector process is_a: GO:1903305 ! regulation of regulated secretory pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0043299 ! leukocyte degranulation -relationship: regulates GO:0043299 ! leukocyte degranulation +intersection_of: RO:0002211 GO:0043299 ! regulates (processual) leukocyte degranulation +relationship: RO:0002211 GO:0043299 ! regulates (processual) leukocyte degranulation [Term] id: GO:0043301 @@ -78237,8 +77913,8 @@ is_a: GO:0002698 ! negative regulation of immune effector process is_a: GO:0043300 ! regulation of leukocyte degranulation is_a: GO:1903306 ! negative regulation of regulated secretory pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0043299 ! leukocyte degranulation -relationship: negatively_regulates GO:0043299 ! leukocyte degranulation +intersection_of: RO:0002212 GO:0043299 ! negatively regulates leukocyte degranulation +relationship: RO:0002212 GO:0043299 ! negatively regulates leukocyte degranulation [Term] id: GO:0043302 @@ -78256,8 +77932,8 @@ is_a: GO:0002699 ! positive regulation of immune effector process is_a: GO:0043300 ! regulation of leukocyte degranulation is_a: GO:1903307 ! positive regulation of regulated secretory pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0043299 ! leukocyte degranulation -relationship: positively_regulates GO:0043299 ! leukocyte degranulation +intersection_of: RO:0002213 GO:0043299 ! positively regulates leukocyte degranulation +relationship: RO:0002213 GO:0043299 ! positively regulates leukocyte degranulation [Term] id: GO:0043312 @@ -78268,8 +77944,8 @@ synonym: "heterophil degranulation" RELATED [] synonym: "neutrophil granule exocytosis" EXACT [] is_a: GO:0043299 ! leukocyte degranulation intersection_of: GO:0045055 ! regulated exocytosis -intersection_of: occurs_in CL:0000775 ! neutrophil -relationship: occurs_in CL:0000775 ! neutrophil +intersection_of: BFO:0000066 CL:0000775 ! occurs in neutrophil +relationship: BFO:0000066 CL:0000775 ! occurs in neutrophil relationship: part_of GO:0002283 ! neutrophil activation involved in immune response relationship: part_of GO:0002446 ! neutrophil mediated immunity @@ -78283,10 +77959,10 @@ is_a: GO:0002886 ! regulation of myeloid leukocyte mediated immunity is_a: GO:0043300 ! regulation of leukocyte degranulation is_a: GO:0050776 ! regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0043312 ! neutrophil degranulation -relationship: regulates GO:0002444 ! myeloid leukocyte mediated immunity -relationship: regulates GO:0006955 ! immune response -relationship: regulates GO:0043312 ! neutrophil degranulation +intersection_of: RO:0002211 GO:0043312 ! regulates (processual) neutrophil degranulation +relationship: RO:0002211 GO:0002444 ! regulates (processual) myeloid leukocyte mediated immunity +relationship: RO:0002211 GO:0006955 ! regulates (processual) immune response +relationship: RO:0002211 GO:0043312 ! regulates (processual) neutrophil degranulation [Term] id: GO:0043314 @@ -78303,10 +77979,10 @@ is_a: GO:0043301 ! negative regulation of leukocyte degranulation is_a: GO:0043313 ! regulation of neutrophil degranulation is_a: GO:0050777 ! negative regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0043312 ! neutrophil degranulation -relationship: negatively_regulates GO:0002444 ! myeloid leukocyte mediated immunity -relationship: negatively_regulates GO:0006955 ! immune response -relationship: negatively_regulates GO:0043312 ! neutrophil degranulation +intersection_of: RO:0002212 GO:0043312 ! negatively regulates neutrophil degranulation +relationship: RO:0002212 GO:0002444 ! negatively regulates myeloid leukocyte mediated immunity +relationship: RO:0002212 GO:0006955 ! negatively regulates immune response +relationship: RO:0002212 GO:0043312 ! negatively regulates neutrophil degranulation [Term] id: GO:0043315 @@ -78324,10 +78000,10 @@ is_a: GO:0043302 ! positive regulation of leukocyte degranulation is_a: GO:0043313 ! regulation of neutrophil degranulation is_a: GO:0050778 ! positive regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0043312 ! neutrophil degranulation -relationship: positively_regulates GO:0002444 ! myeloid leukocyte mediated immunity -relationship: positively_regulates GO:0006955 ! immune response -relationship: positively_regulates GO:0043312 ! neutrophil degranulation +intersection_of: RO:0002213 GO:0043312 ! positively regulates neutrophil degranulation +relationship: RO:0002213 GO:0002444 ! positively regulates myeloid leukocyte mediated immunity +relationship: RO:0002213 GO:0006955 ! positively regulates immune response +relationship: RO:0002213 GO:0043312 ! positively regulates neutrophil degranulation [Term] id: GO:0043320 @@ -78339,8 +78015,8 @@ synonym: "NK cell degranulation" EXACT [] synonym: "NK cell granule exocytosis" EXACT [] is_a: GO:0043299 ! leukocyte degranulation intersection_of: GO:0045055 ! regulated exocytosis -intersection_of: occurs_in CL:0000623 ! natural killer cell -relationship: occurs_in CL:0000623 ! natural killer cell +intersection_of: BFO:0000066 CL:0000623 ! occurs in natural killer cell +relationship: BFO:0000066 CL:0000623 ! occurs in natural killer cell relationship: part_of GO:0002323 ! natural killer cell activation involved in immune response relationship: part_of GO:0042267 ! natural killer cell mediated cytotoxicity @@ -78355,9 +78031,9 @@ synonym: "regulation of NK cell granule exocytosis" EXACT [] is_a: GO:0042269 ! regulation of natural killer cell mediated cytotoxicity is_a: GO:0043300 ! regulation of leukocyte degranulation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0043320 ! natural killer cell degranulation -relationship: regulates GO:0042267 ! natural killer cell mediated cytotoxicity -relationship: regulates GO:0043320 ! natural killer cell degranulation +intersection_of: RO:0002211 GO:0043320 ! regulates (processual) natural killer cell degranulation +relationship: RO:0002211 GO:0042267 ! regulates (processual) natural killer cell mediated cytotoxicity +relationship: RO:0002211 GO:0043320 ! regulates (processual) natural killer cell degranulation [Term] id: GO:0043322 @@ -78375,9 +78051,9 @@ is_a: GO:0043301 ! negative regulation of leukocyte degranulation is_a: GO:0043321 ! regulation of natural killer cell degranulation is_a: GO:0045953 ! negative regulation of natural killer cell mediated cytotoxicity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0043320 ! natural killer cell degranulation -relationship: negatively_regulates GO:0042267 ! natural killer cell mediated cytotoxicity -relationship: negatively_regulates GO:0043320 ! natural killer cell degranulation +intersection_of: RO:0002212 GO:0043320 ! negatively regulates natural killer cell degranulation +relationship: RO:0002212 GO:0042267 ! negatively regulates natural killer cell mediated cytotoxicity +relationship: RO:0002212 GO:0043320 ! negatively regulates natural killer cell degranulation [Term] id: GO:0043323 @@ -78396,9 +78072,9 @@ is_a: GO:0043302 ! positive regulation of leukocyte degranulation is_a: GO:0043321 ! regulation of natural killer cell degranulation is_a: GO:0045954 ! positive regulation of natural killer cell mediated cytotoxicity intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0043320 ! natural killer cell degranulation -relationship: positively_regulates GO:0042267 ! natural killer cell mediated cytotoxicity -relationship: positively_regulates GO:0043320 ! natural killer cell degranulation +intersection_of: RO:0002213 GO:0043320 ! positively regulates natural killer cell degranulation +relationship: RO:0002213 GO:0042267 ! positively regulates natural killer cell mediated cytotoxicity +relationship: RO:0002213 GO:0043320 ! positively regulates natural killer cell degranulation [Term] id: GO:0043324 @@ -78421,8 +78097,8 @@ synonym: "enucleate RBC differentiation" EXACT [CL:0000232] synonym: "enucleate red blood cell differentiation" EXACT [CL:0000232] is_a: GO:0030218 ! erythrocyte differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000595 ! enucleate erythrocyte -relationship: results_in_acquisition_of_features_of CL:0000595 ! enucleate erythrocyte +intersection_of: RO:0002315 CL:0000595 ! results in acquisition of features of enucleate erythrocyte +relationship: RO:0002315 CL:0000595 ! results in acquisition of features of enucleate erythrocyte [Term] id: GO:0043354 @@ -78433,9 +78109,9 @@ synonym: "enucleate RBC maturation" EXACT [CL:0000232] synonym: "enucleate red blood cell maturation" EXACT [CL:0000232] is_a: GO:0043249 ! erythrocyte maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of CL:0000595 ! enucleate erythrocyte +intersection_of: RO:0002299 CL:0000595 ! results in maturation of enucleate erythrocyte relationship: part_of GO:0048822 ! enucleate erythrocyte development -relationship: results_in_maturation_of CL:0000595 ! enucleate erythrocyte +relationship: RO:0002299 CL:0000595 ! results in maturation of enucleate erythrocyte [Term] id: GO:0043362 @@ -78446,9 +78122,9 @@ synonym: "nucleate RBC maturation" EXACT [CL:0000232] synonym: "nucleate red blood cell maturation" EXACT [CL:0000232] is_a: GO:0043249 ! erythrocyte maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of CL:0000562 ! nucleate erythrocyte +intersection_of: RO:0002299 CL:0000562 ! results in maturation of nucleate erythrocyte relationship: part_of GO:0048823 ! nucleate erythrocyte development -relationship: results_in_maturation_of CL:0000562 ! nucleate erythrocyte +relationship: RO:0002299 CL:0000562 ! results in maturation of nucleate erythrocyte [Term] id: GO:0043363 @@ -78459,8 +78135,8 @@ synonym: "nucleate RBC differentiation" EXACT [CL:0000232] synonym: "nucleate red blood cell differentiation" EXACT [CL:0000232] is_a: GO:0030218 ! erythrocyte differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000562 ! nucleate erythrocyte -relationship: results_in_acquisition_of_features_of CL:0000562 ! nucleate erythrocyte +intersection_of: RO:0002315 CL:0000562 ! results in acquisition of features of nucleate erythrocyte +relationship: RO:0002315 CL:0000562 ! results in acquisition of features of nucleate erythrocyte [Term] id: GO:0043388 @@ -78476,8 +78152,8 @@ synonym: "upregulation of DNA binding" EXACT [] is_a: GO:0051099 ! positive regulation of binding is_a: GO:0051101 ! regulation of DNA binding intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003677 ! DNA binding -relationship: positively_regulates GO:0003677 ! DNA binding +intersection_of: RO:0002213 GO:0003677 ! positively regulates DNA binding +relationship: RO:0002213 GO:0003677 ! positively regulates DNA binding [Term] id: GO:0043392 @@ -78492,8 +78168,8 @@ synonym: "inhibition of DNA binding" NARROW [] is_a: GO:0051100 ! negative regulation of binding is_a: GO:0051101 ! regulation of DNA binding intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003677 ! DNA binding -relationship: negatively_regulates GO:0003677 ! DNA binding +intersection_of: RO:0002212 GO:0003677 ! negatively regulates DNA binding +relationship: RO:0002212 GO:0003677 ! negatively regulates DNA binding [Term] id: GO:0043393 @@ -78503,8 +78179,8 @@ def: "Any process that modulates the frequency, rate or extent of protein bindin subset: gocheck_do_not_annotate is_a: GO:0051098 ! regulation of binding intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0005515 ! protein binding -relationship: regulates GO:0005515 ! protein binding +intersection_of: RO:0002211 GO:0005515 ! regulates (processual) protein binding +relationship: RO:0002211 GO:0005515 ! regulates (processual) protein binding [Term] id: GO:0043394 @@ -78513,27 +78189,8 @@ namespace: molecular_function def: "Binding to a proteoglycan, any glycoprotein in which the carbohydrate units are glycosaminoglycans." [ISBN:0198506732] is_a: GO:0097367 ! carbohydrate derivative binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:37396 ! proteoglycan -relationship: has_primary_input CHEBI:37396 ! proteoglycan - -[Term] -id: GO:0043401 -name: steroid hormone receptor signaling pathway -namespace: biological_process -def: "The series of molecular signals mediated by a steroid hormone binding to a receptor." [PMID:12606724] -synonym: "steroid hormone mediated signalling" EXACT [] -synonym: "steroid hormone-mediated signaling pathway" EXACT [] -is_a: GO:0009755 ! hormone-mediated signaling pathway -relationship: part_of GO:0071383 ! cellular response to steroid hormone stimulus - -[Term] -id: GO:0043402 -name: glucocorticoid mediated signaling pathway -namespace: biological_process -def: "The series of molecular signals mediated by the detection of a glucocorticoid hormone." [PMID:15240347] -synonym: "glucocorticoid mediated signalling" EXACT [] -is_a: GO:0043401 ! steroid hormone receptor signaling pathway -relationship: part_of GO:0071385 ! cellular response to glucocorticoid stimulus +intersection_of: RO:0004009 CHEBI:37396 ! has primary input proteoglycan +relationship: RO:0004009 CHEBI:37396 ! has primary input proteoglycan [Term] id: GO:0043403 @@ -78543,15 +78200,15 @@ def: "The regrowth of skeletal muscle tissue to repair injured or damaged muscle synonym: "myofiber turnover" RELATED [] is_a: GO:0042246 ! tissue regeneration intersection_of: GO:0031099 ! regeneration -intersection_of: results_in_maturation_of UBERON:0001134 ! skeletal muscle tissue -relationship: results_in_maturation_of UBERON:0001134 ! skeletal muscle tissue +intersection_of: RO:0002299 UBERON:0001134 ! results in maturation of skeletal muscle tissue +relationship: RO:0002299 UBERON:0001134 ! results in maturation of skeletal muscle tissue [Term] id: GO:0043412 name: macromolecule modification namespace: biological_process def: "The covalent alteration of one or more monomeric units in a polypeptide, polynucleotide, polysaccharide, or other biological macromolecule, resulting in a change in its properties." [GOC:go_curators] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate subset: goslim_pir is_a: GO:0043170 ! macromolecule metabolic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI @@ -78569,8 +78226,8 @@ synonym: "upregulation of skeletal muscle regeneration" EXACT [] is_a: GO:0043416 ! regulation of skeletal muscle tissue regeneration is_a: GO:0048639 ! positive regulation of developmental growth intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0043403 ! skeletal muscle tissue regeneration -relationship: positively_regulates GO:0043403 ! skeletal muscle tissue regeneration +intersection_of: RO:0002213 GO:0043403 ! positively regulates skeletal muscle tissue regeneration +relationship: RO:0002213 GO:0043403 ! positively regulates skeletal muscle tissue regeneration [Term] id: GO:0043416 @@ -78581,8 +78238,8 @@ is_a: GO:0032101 ! regulation of response to external stimulus is_a: GO:0048638 ! regulation of developmental growth is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0043403 ! skeletal muscle tissue regeneration -relationship: regulates GO:0043403 ! skeletal muscle tissue regeneration +intersection_of: RO:0002211 GO:0043403 ! regulates (processual) skeletal muscle tissue regeneration +relationship: RO:0002211 GO:0043403 ! regulates (processual) skeletal muscle tissue regeneration [Term] id: GO:0043417 @@ -78597,33 +78254,9 @@ is_a: GO:0043416 ! regulation of skeletal muscle tissue regeneration is_a: GO:0048640 ! negative regulation of developmental growth is_a: GO:0061045 ! negative regulation of wound healing intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0043403 ! skeletal muscle tissue regeneration -relationship: negatively_regulates GO:0042060 ! wound healing -relationship: negatively_regulates GO:0043403 ! skeletal muscle tissue regeneration - -[Term] -id: GO:0043433 -name: negative regulation of DNA-binding transcription factor activity -namespace: biological_process -alt_id: GO:1904168 -alt_id: GO:2000824 -def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription." [GOC:jl] -subset: gocheck_do_not_annotate -synonym: "down regulation of transcription factor activity" EXACT [] -synonym: "down-regulation of transcription factor activity" EXACT [] -synonym: "downregulation of transcription factor activity" EXACT [] -synonym: "inhibition of transcription factor activity" NARROW [] -synonym: "negative regulation of androgen receptor activity" NARROW [] -synonym: "negative regulation of DNA binding transcription factor activity" EXACT [] -synonym: "negative regulation of sequence-specific DNA binding transcription factor activity" EXACT [] -synonym: "negative regulation of thyroid hormone receptor activity" NARROW [] -synonym: "negative regulation of transcription factor activity" BROAD [GOC:dph, GOC:tb] -is_a: GO:0044092 ! negative regulation of molecular function -is_a: GO:0051090 ! regulation of DNA-binding transcription factor activity -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003700 ! DNA-binding transcription factor activity -relationship: negatively_regulates GO:0003700 ! DNA-binding transcription factor activity -creation_date: 2011-07-15T10:56:12Z +intersection_of: RO:0002212 GO:0043403 ! negatively regulates skeletal muscle tissue regeneration +relationship: RO:0002212 GO:0042060 ! negatively regulates wound healing +relationship: RO:0002212 GO:0043403 ! negatively regulates skeletal muscle tissue regeneration [Term] id: GO:0043434 @@ -78633,11 +78266,11 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to peptide hormone stimulus" EXACT [GOC:dos] synonym: "response to polypeptide hormone stimulus" EXACT [] is_a: GO:0009725 ! response to hormone -is_a: GO:0010243 ! response to organonitrogen compound +is_a: GO:1901698 ! response to nitrogen compound is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:25905 ! peptide hormone -relationship: has_primary_input CHEBI:25905 ! peptide hormone +intersection_of: RO:0004009 CHEBI:25905 ! has primary input peptide hormone +relationship: RO:0004009 CHEBI:25905 ! has primary input peptide hormone [Term] id: GO:0043436 @@ -78653,21 +78286,21 @@ synonym: "oxo acid metabolism" EXACT [] synonym: "oxoacid metabolism" EXACT [] is_a: GO:0006082 ! organic acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:35406 ! oxoanion -relationship: has_primary_input_or_output CHEBI:35406 ! oxoanion +intersection_of: RO:0004007 CHEBI:35406 ! has primary input or output oxoanion +relationship: RO:0004007 CHEBI:35406 ! has primary input or output oxoanion [Term] id: GO:0043446 -name: cellular alkane metabolic process +name: alkane metabolic process namespace: biological_process def: "The chemical reactions and pathways involving an alkane, any acyclic branched or unbranched hydrocarbon having the general formula CnH2n+2, as carried out by individual cells." [GOC:jl, Wikipedia:Alkane] subset: goslim_pir synonym: "alkane metabolism" EXACT [] -is_a: GO:0044237 ! cellular metabolic process is_a: GO:0120252 ! hydrocarbon metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:18310 ! alkane -relationship: has_primary_input_or_output CHEBI:18310 ! alkane +intersection_of: RO:0004007 CHEBI:18310 ! has primary input or output alkane +relationship: RO:0004007 CHEBI:18310 ! has primary input or output alkane +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0043447 @@ -78678,12 +78311,11 @@ synonym: "alkane anabolism" EXACT [] synonym: "alkane biosynthesis" EXACT [] synonym: "alkane formation" EXACT [] synonym: "alkane synthesis" EXACT [] -is_a: GO:0043446 ! cellular alkane metabolic process -is_a: GO:0044249 ! cellular biosynthetic process +is_a: GO:0043446 ! alkane metabolic process is_a: GO:0120251 ! hydrocarbon biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:18310 ! alkane -relationship: has_primary_output CHEBI:18310 ! alkane +intersection_of: RO:0004008 CHEBI:18310 ! has primary output alkane +relationship: RO:0004008 CHEBI:18310 ! has primary output alkane [Term] id: GO:0043448 @@ -78693,12 +78325,11 @@ def: "The chemical reactions and pathways resulting in the breakdown of an alkan synonym: "alkane breakdown" EXACT [] synonym: "alkane catabolism" EXACT [] synonym: "alkane degradation" EXACT [] -is_a: GO:0043446 ! cellular alkane metabolic process -is_a: GO:0044248 ! cellular catabolic process +is_a: GO:0043446 ! alkane metabolic process is_a: GO:0120253 ! hydrocarbon catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:18310 ! alkane -relationship: has_primary_input CHEBI:18310 ! alkane +intersection_of: RO:0004009 CHEBI:18310 ! has primary input alkane +relationship: RO:0004009 CHEBI:18310 ! has primary input alkane [Term] id: GO:0043455 @@ -78708,8 +78339,8 @@ def: "Any process that modulates the frequency, rate or extent of secondary meta synonym: "regulation of secondary metabolism" EXACT [] is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0019748 ! secondary metabolic process -relationship: regulates GO:0019748 ! secondary metabolic process +intersection_of: RO:0002211 GO:0019748 ! regulates (processual) secondary metabolic process +relationship: RO:0002211 GO:0019748 ! regulates (processual) secondary metabolic process [Term] id: GO:0043465 @@ -78718,18 +78349,18 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of fermentation, the anaerobic enzymatic conversion of organic compounds, especially carbohydrates, to other compounds, especially to ethyl alcohol, resulting in energy in the form of adenosine triphosphate (ATP)." [GOC:jl] is_a: GO:0043467 ! regulation of generation of precursor metabolites and energy intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006113 ! fermentation -relationship: regulates GO:0006113 ! fermentation +intersection_of: RO:0002211 GO:0006113 ! regulates (processual) fermentation +relationship: RO:0002211 GO:0006113 ! regulates (processual) fermentation [Term] id: GO:0043467 name: regulation of generation of precursor metabolites and energy namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and the processes involved in the liberation of energy from these substances." [GOC:jl] -is_a: GO:0031323 ! regulation of cellular metabolic process +is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006091 ! generation of precursor metabolites and energy -relationship: regulates GO:0006091 ! generation of precursor metabolites and energy +intersection_of: RO:0002211 GO:0006091 ! regulates (processual) generation of precursor metabolites and energy +relationship: RO:0002211 GO:0006091 ! regulates (processual) generation of precursor metabolites and energy [Term] id: GO:0043470 @@ -78739,8 +78370,8 @@ def: "Any process that modulates the frequency, rate, or extent of the chemical is_a: GO:0006109 ! regulation of carbohydrate metabolic process is_a: GO:0009894 ! regulation of catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0016052 ! carbohydrate catabolic process -relationship: regulates GO:0016052 ! carbohydrate catabolic process +intersection_of: RO:0002211 GO:0016052 ! regulates (processual) carbohydrate catabolic process +relationship: RO:0002211 GO:0016052 ! regulates (processual) carbohydrate catabolic process [Term] id: GO:0043473 @@ -78751,7 +78382,7 @@ subset: goslim_chembl subset: goslim_pir is_a: GO:0008150 ! biological_process relationship: in_taxon NCBITaxon:131567 {all_only="true"} ! cellular organisms -relationship: only_in_taxon NCBITaxon:131567 ! cellular organisms +relationship: RO:0002160 NCBITaxon:131567 ! only in taxon cellular organisms [Term] id: GO:0043474 @@ -78774,7 +78405,7 @@ subset: goslim_pir synonym: "muscle plasticity" RELATED [] is_a: GO:0003012 ! muscle system process is_a: GO:0050896 ! response to stimulus -relationship: occurs_in UBERON:0002385 ! muscle tissue +relationship: BFO:0000066 UBERON:0002385 ! occurs in muscle tissue [Term] id: GO:0043501 @@ -78784,8 +78415,8 @@ def: "Any process in which skeletal muscles change their phenotypic profiles in synonym: "skeletal muscle plasticity" RELATED [] is_a: GO:0014888 ! striated muscle adaptation intersection_of: GO:0043500 ! muscle adaptation -intersection_of: occurs_in UBERON:0001134 ! skeletal muscle tissue -relationship: occurs_in UBERON:0001134 ! skeletal muscle tissue +intersection_of: BFO:0000066 UBERON:0001134 ! occurs in skeletal muscle tissue +relationship: BFO:0000066 UBERON:0001134 ! occurs in skeletal muscle tissue [Term] id: GO:0043502 @@ -78796,8 +78427,8 @@ synonym: "regulation of muscle plasticity" RELATED [] is_a: GO:0048583 ! regulation of response to stimulus is_a: GO:0090257 ! regulation of muscle system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0043500 ! muscle adaptation -relationship: regulates GO:0043500 ! muscle adaptation +intersection_of: RO:0002211 GO:0043500 ! regulates (processual) muscle adaptation +relationship: RO:0002211 GO:0043500 ! regulates (processual) muscle adaptation [Term] id: GO:0043523 @@ -78813,8 +78444,8 @@ synonym: "regulation of programmed cell death of neuronal cells" EXACT [] synonym: "regulation of programmed cell death, neurons" EXACT [] is_a: GO:0042981 ! regulation of apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051402 ! neuron apoptotic process -relationship: regulates GO:0051402 ! neuron apoptotic process +intersection_of: RO:0002211 GO:0051402 ! regulates (processual) neuron apoptotic process +relationship: RO:0002211 GO:0051402 ! regulates (processual) neuron apoptotic process [Term] id: GO:0043524 @@ -78831,8 +78462,8 @@ synonym: "neuron survival" NARROW [] is_a: GO:0043066 ! negative regulation of apoptotic process is_a: GO:0043523 ! regulation of neuron apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051402 ! neuron apoptotic process -relationship: negatively_regulates GO:0051402 ! neuron apoptotic process +intersection_of: RO:0002212 GO:0051402 ! negatively regulates neuron apoptotic process +relationship: RO:0002212 GO:0051402 ! negatively regulates neuron apoptotic process [Term] id: GO:0043525 @@ -78849,8 +78480,8 @@ synonym: "upregulation of neuron apoptosis" EXACT [] is_a: GO:0043065 ! positive regulation of apoptotic process is_a: GO:0043523 ! regulation of neuron apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051402 ! neuron apoptotic process -relationship: positively_regulates GO:0051402 ! neuron apoptotic process +intersection_of: RO:0002213 GO:0051402 ! positively regulates neuron apoptotic process +relationship: RO:0002213 GO:0051402 ! positively regulates neuron apoptotic process [Term] id: GO:0043531 @@ -78861,8 +78492,8 @@ synonym: "adenosine 5'-diphosphate binding" EXACT [] synonym: "adenosine diphosphate binding" EXACT [] is_a: GO:0043168 ! anion binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:456216 ! ADP(3-) -relationship: has_primary_input CHEBI:456216 ! ADP(3-) +intersection_of: RO:0004009 CHEBI:456216 ! has primary input ADP(3-) +relationship: RO:0004009 CHEBI:456216 ! has primary input ADP(3-) [Term] id: GO:0043534 @@ -78871,8 +78502,8 @@ namespace: biological_process def: "The orderly movement of an endothelial cell into the extracellular matrix in order to form new blood vessels during angiogenesis." [PMID:11166264] is_a: GO:0043542 ! endothelial cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000071 ! blood vessel endothelial cell -relationship: results_in_movement_of CL:0000071 ! blood vessel endothelial cell +intersection_of: RO:0002565 CL:0000071 ! results in movement of blood vessel endothelial cell +relationship: RO:0002565 CL:0000071 ! results in movement of blood vessel endothelial cell [Term] id: GO:0043535 @@ -78881,8 +78512,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the migration of the endothelial cells of blood vessels." [GOC:go_curators] is_a: GO:0010594 ! regulation of endothelial cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0043534 ! blood vessel endothelial cell migration -relationship: regulates GO:0043534 ! blood vessel endothelial cell migration +intersection_of: RO:0002211 GO:0043534 ! regulates (processual) blood vessel endothelial cell migration +relationship: RO:0002211 GO:0043534 ! regulates (processual) blood vessel endothelial cell migration [Term] id: GO:0043536 @@ -78897,8 +78528,8 @@ synonym: "upregulation of blood vessel endothelial cell migration" EXACT [] is_a: GO:0010595 ! positive regulation of endothelial cell migration is_a: GO:0043535 ! regulation of blood vessel endothelial cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0043534 ! blood vessel endothelial cell migration -relationship: positively_regulates GO:0043534 ! blood vessel endothelial cell migration +intersection_of: RO:0002213 GO:0043534 ! positively regulates blood vessel endothelial cell migration +relationship: RO:0002213 GO:0043534 ! positively regulates blood vessel endothelial cell migration [Term] id: GO:0043537 @@ -78912,8 +78543,8 @@ synonym: "inhibition of blood vessel endothelial cell migration" NARROW [] is_a: GO:0010596 ! negative regulation of endothelial cell migration is_a: GO:0043535 ! regulation of blood vessel endothelial cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0043534 ! blood vessel endothelial cell migration -relationship: negatively_regulates GO:0043534 ! blood vessel endothelial cell migration +intersection_of: RO:0002212 GO:0043534 ! negatively regulates blood vessel endothelial cell migration +relationship: RO:0002212 GO:0043534 ! negatively regulates blood vessel endothelial cell migration [Term] id: GO:0043542 @@ -78922,21 +78553,21 @@ namespace: biological_process def: "The orderly movement of an endothelial cell into the extracellular matrix to form an endothelium." [GOC:go_curators] is_a: GO:0016477 ! cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000115 ! endothelial cell -relationship: results_in_movement_of CL:0000115 ! endothelial cell +intersection_of: RO:0002565 CL:0000115 ! results in movement of endothelial cell +relationship: RO:0002565 CL:0000115 ! results in movement of endothelial cell [Term] id: GO:0043549 name: regulation of kinase activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [GOC:bf] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate is_a: GO:0042325 ! regulation of phosphorylation is_a: GO:0051338 ! regulation of transferase activity intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0016301 ! kinase activity -relationship: regulates GO:0016301 ! kinase activity -relationship: regulates GO:0016310 ! phosphorylation +intersection_of: RO:0002211 GO:0016301 ! regulates (processual) kinase activity +relationship: RO:0002211 GO:0016301 ! regulates (processual) kinase activity +relationship: RO:0002211 GO:0016310 ! regulates (processual) phosphorylation [Term] id: GO:0043559 @@ -78946,17 +78577,9 @@ def: "Binding to insulin, a polypeptide hormone produced by the islets of Langer is_a: GO:0005515 ! protein binding is_a: GO:0017046 ! peptide hormone binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input PR:000009054 ! insulin gene translation product -relationship: has_primary_input PR:000009054 ! insulin gene translation product +intersection_of: RO:0004009 PR:000009054 ! has primary input insulin gene translation product relationship: never_in_taxon NCBITaxon:4751 ! Fungi - -[Term] -id: GO:0043565 -name: sequence-specific DNA binding -namespace: molecular_function -def: "Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding." [GOC:jl] -synonym: "sequence specific DNA binding" EXACT [] -is_a: GO:0003677 ! DNA binding +relationship: RO:0004009 PR:000009054 ! has primary input insulin gene translation product [Term] id: GO:0043576 @@ -78965,8 +78588,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the process of gaseous exchange between an organism and its environment." [GOC:jl] is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007585 ! respiratory gaseous exchange by respiratory system -relationship: regulates GO:0007585 ! respiratory gaseous exchange by respiratory system +intersection_of: RO:0002211 GO:0007585 ! regulates (processual) respiratory gaseous exchange by respiratory system +relationship: RO:0002211 GO:0007585 ! regulates (processual) respiratory gaseous exchange by respiratory system [Term] id: GO:0043583 @@ -78976,8 +78599,8 @@ def: "The process whose specific outcome is the progression of the ear over time synonym: "hearing organ development" EXACT [] is_a: GO:0007423 ! sensory organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001690 ! ear -relationship: results_in_development_of UBERON:0001690 ! ear +intersection_of: RO:0002296 UBERON:0001690 ! results in development of ear +relationship: RO:0002296 UBERON:0001690 ! results in development of ear [Term] id: GO:0043584 @@ -78987,9 +78610,9 @@ def: "The process whose specific outcome is the progression of the nose over tim synonym: "nasus development" EXACT [] is_a: GO:0007423 ! sensory organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000004 ! nose +intersection_of: RO:0002296 UBERON:0000004 ! results in development of nose relationship: part_of GO:0060541 ! respiratory system development -relationship: results_in_development_of UBERON:0000004 ! nose +relationship: RO:0002296 UBERON:0000004 ! results in development of nose [Term] id: GO:0043585 @@ -78999,9 +78622,9 @@ def: "The process in which the anatomical structures of the nose are generated a synonym: "nasus morphogenesis" EXACT [] is_a: GO:0090596 ! sensory organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000004 ! nose +intersection_of: RO:0002298 UBERON:0000004 ! results in morphogenesis of nose relationship: part_of GO:0043584 ! nose development -relationship: results_in_morphogenesis_of UBERON:0000004 ! nose +relationship: RO:0002298 UBERON:0000004 ! results in morphogenesis of nose [Term] id: GO:0043586 @@ -79012,8 +78635,8 @@ synonym: "glossa development" NARROW [] synonym: "lingua development" NARROW [] is_a: GO:0007423 ! sensory organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001723 ! tongue -relationship: results_in_development_of UBERON:0001723 ! tongue +intersection_of: RO:0002296 UBERON:0001723 ! results in development of tongue +relationship: RO:0002296 UBERON:0001723 ! results in development of tongue [Term] id: GO:0043587 @@ -79024,9 +78647,9 @@ synonym: "glossa morphogenesis" NARROW [] synonym: "lingua morphogenesis" EXACT [] is_a: GO:0090596 ! sensory organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001723 ! tongue +intersection_of: RO:0002298 UBERON:0001723 ! results in morphogenesis of tongue relationship: part_of GO:0043586 ! tongue development -relationship: results_in_morphogenesis_of UBERON:0001723 ! tongue +relationship: RO:0002298 UBERON:0001723 ! results in morphogenesis of tongue [Term] id: GO:0043588 @@ -79036,10 +78659,10 @@ def: "The process whose specific outcome is the progression of the skin over tim synonym: "animal skin development" EXACT [] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002097 ! skin of body +intersection_of: RO:0002296 UBERON:0002097 ! results in development of skin of body relationship: never_in_taxon NCBITaxon:50557 ! Insecta relationship: never_in_taxon NCBITaxon:6656 ! Arthropoda -relationship: results_in_development_of UBERON:0002097 ! skin of body +relationship: RO:0002296 UBERON:0002097 ! results in development of skin of body [Term] id: GO:0043589 @@ -79048,9 +78671,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the skin are generated and organized. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner, sensitive and vascular dermis (cutis, corium or true skin) composed mostly of connective tissue." [GOC:jl, UBERON:0002097] is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002097 ! skin of body +intersection_of: RO:0002298 UBERON:0002097 ! results in morphogenesis of skin of body relationship: part_of GO:0043588 ! skin development -relationship: results_in_morphogenesis_of UBERON:0002097 ! skin of body +relationship: RO:0002298 UBERON:0002097 ! results in morphogenesis of skin of body [Term] id: GO:0043603 @@ -79064,8 +78687,8 @@ synonym: "amide metabolism" EXACT [] synonym: "cellular amide metabolic process" EXACT [] is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:32988 ! amide -relationship: has_primary_input_or_output CHEBI:32988 ! amide +intersection_of: RO:0004007 CHEBI:32988 ! has primary input or output amide +relationship: RO:0004007 CHEBI:32988 ! has primary input or output amide property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27189" xsd:anyURI [Term] @@ -79076,8 +78699,8 @@ def: "The chemical reactions and pathways resulting in the formation of an amide is_a: GO:0009058 ! biosynthetic process is_a: GO:0043603 ! amide metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:32988 ! amide -relationship: has_primary_output CHEBI:32988 ! amide +intersection_of: RO:0004008 CHEBI:32988 ! has primary output amide +relationship: RO:0004008 CHEBI:32988 ! has primary output amide [Term] id: GO:0043605 @@ -79088,8 +78711,8 @@ synonym: "cellular amide catabolic process" EXACT [] is_a: GO:0009056 ! catabolic process is_a: GO:0043603 ! amide metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_output CHEBI:32988 ! amide -relationship: has_primary_output CHEBI:32988 ! amide +intersection_of: RO:0004008 CHEBI:32988 ! has primary output amide +relationship: RO:0004008 CHEBI:32988 ! has primary output amide [Term] id: GO:0043615 @@ -79100,8 +78723,8 @@ synonym: "astrocyte migration" EXACT [] synonym: "astrocytic glial cell migration" EXACT [] is_a: GO:0008347 ! glial cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000127 ! astrocyte -relationship: results_in_movement_of CL:0000127 ! astrocyte +intersection_of: RO:0002565 CL:0000127 ! results in movement of astrocyte +relationship: RO:0002565 CL:0000127 ! results in movement of astrocyte [Term] id: GO:0043616 @@ -79110,9 +78733,9 @@ namespace: biological_process def: "The multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population. Keratinocytes are epidermal cells which synthesize keratin and undergo a characteristic change as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin." [CL:0000311] is_a: GO:0050673 ! epithelial cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000312 ! keratinocyte -relationship: acts_on_population_of CL:0000312 ! keratinocyte +intersection_of: RO:0012003 CL:0000312 ! acts on population of keratinocyte relationship: never_in_taxon NCBITaxon:6656 ! Arthropoda +relationship: RO:0012003 CL:0000312 ! acts on population of keratinocyte [Term] id: GO:0043648 @@ -79124,8 +78747,8 @@ synonym: "dicarboxylate metabolism" EXACT [] synonym: "dicarboxylic acid metabolism" EXACT [] is_a: GO:0019752 ! carboxylic acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:35693 ! dicarboxylic acid anion -relationship: has_primary_input_or_output CHEBI:35693 ! dicarboxylic acid anion +intersection_of: RO:0004007 CHEBI:35693 ! has primary input or output dicarboxylic acid anion +relationship: RO:0004007 CHEBI:35693 ! has primary input or output dicarboxylic acid anion [Term] id: GO:0043649 @@ -79140,8 +78763,8 @@ synonym: "dicarboxylic acid degradation" EXACT [] is_a: GO:0043648 ! dicarboxylic acid metabolic process is_a: GO:0046395 ! carboxylic acid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:35693 ! dicarboxylic acid anion -relationship: has_primary_input CHEBI:35693 ! dicarboxylic acid anion +intersection_of: RO:0004009 CHEBI:35693 ! has primary input dicarboxylic acid anion +relationship: RO:0004009 CHEBI:35693 ! has primary input dicarboxylic acid anion [Term] id: GO:0043650 @@ -79157,8 +78780,8 @@ synonym: "dicarboxylic acid synthesis" EXACT [] is_a: GO:0043648 ! dicarboxylic acid metabolic process is_a: GO:0046394 ! carboxylic acid biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:35693 ! dicarboxylic acid anion -relationship: has_primary_output CHEBI:35693 ! dicarboxylic acid anion +intersection_of: RO:0004008 CHEBI:35693 ! has primary output dicarboxylic acid anion +relationship: RO:0004008 CHEBI:35693 ! has primary output dicarboxylic acid anion [Term] id: GO:0043695 @@ -79210,8 +78833,8 @@ synonym: "protein complex subunit organization" EXACT [] synonym: "protein-containing complex subunit organization" RELATED [] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0032991 ! protein-containing complex -relationship: results_in_organization_of GO:0032991 ! protein-containing complex +intersection_of: RO:0002592 GO:0032991 ! results in organization of protein-containing complex +relationship: RO:0002592 GO:0032991 ! results in organization of protein-containing complex property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22580" xsd:anyURI created_by: mah creation_date: 2010-09-08T10:01:42Z @@ -79224,8 +78847,8 @@ def: "The chemical reactions and pathways involving glucans, polysaccharides con synonym: "glucan metabolism" EXACT [] is_a: GO:0005976 ! polysaccharide metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:37163 ! glucan -relationship: has_primary_input_or_output CHEBI:37163 ! glucan +intersection_of: RO:0004007 CHEBI:37163 ! has primary input or output glucan +relationship: RO:0004007 CHEBI:37163 ! has primary input or output glucan [Term] id: GO:0044057 @@ -79234,8 +78857,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a system process, a multicellular organismal process carried out by any of the organs or tissues in an organ system." [GOC:jl] is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003008 ! system process -relationship: regulates GO:0003008 ! system process +intersection_of: RO:0002211 GO:0003008 ! regulates (processual) system process +relationship: RO:0002211 GO:0003008 ! regulates (processual) system process [Term] id: GO:0044058 @@ -79244,8 +78867,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a digestive system process, a physical, chemical, or biochemical process carried out by living organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism." [GOC:jl] is_a: GO:0044057 ! regulation of system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0022600 ! digestive system process -relationship: regulates GO:0022600 ! digestive system process +intersection_of: RO:0002211 GO:0022600 ! regulates (processual) digestive system process +relationship: RO:0002211 GO:0022600 ! regulates (processual) digestive system process [Term] id: GO:0044060 @@ -79255,8 +78878,8 @@ def: "Any process that modulates the frequency, rate or extent of an endocrine p synonym: "regulation of endocrine system process" EXACT [] is_a: GO:0044057 ! regulation of system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0050886 ! endocrine process -relationship: regulates GO:0050886 ! endocrine process +intersection_of: RO:0002211 GO:0050886 ! regulates (processual) endocrine process +relationship: RO:0002211 GO:0050886 ! regulates (processual) endocrine process [Term] id: GO:0044062 @@ -79266,8 +78889,8 @@ def: "Any process that modulates the frequency, rate, or extent of excretion, th is_a: GO:0044057 ! regulation of system process is_a: GO:0051046 ! regulation of secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007588 ! excretion -relationship: regulates GO:0007588 ! excretion +intersection_of: RO:0002211 GO:0007588 ! regulates (processual) excretion +relationship: RO:0002211 GO:0007588 ! regulates (processual) excretion [Term] id: GO:0044065 @@ -79277,8 +78900,8 @@ def: "Any process that modulates the frequency, rate or extent of a respiratory is_a: GO:0043576 ! regulation of respiratory gaseous exchange is_a: GO:0044057 ! regulation of system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003016 ! respiratory system process -relationship: regulates GO:0003016 ! respiratory system process +intersection_of: RO:0002211 GO:0003016 ! regulates (processual) respiratory system process +relationship: RO:0002211 GO:0003016 ! regulates (processual) respiratory system process [Term] id: GO:0044085 @@ -79286,9 +78909,11 @@ name: cellular component biogenesis namespace: biological_process alt_id: GO:0071843 def: "A process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellular component. Includes biosynthesis of constituent macromolecules, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component." [GOC:jl, GOC:mah] +subset: gocheck_do_not_annotate subset: goslim_pir synonym: "cellular component biogenesis at cellular level" EXACT [] is_a: GO:0071840 ! cellular component organization or biogenesis +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27194" xsd:anyURI [Term] id: GO:0044087 @@ -79297,8 +78922,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cellular component biogenesis, a process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellular component." [GOC:jl] is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0044085 ! cellular component biogenesis -relationship: regulates GO:0044085 ! cellular component biogenesis +intersection_of: RO:0002211 GO:0044085 ! regulates (processual) cellular component biogenesis +relationship: RO:0002211 GO:0044085 ! regulates (processual) cellular component biogenesis [Term] id: GO:0044088 @@ -79309,8 +78934,8 @@ synonym: "regulation of vacuole biogenesis" RELATED [GOC:mah] synonym: "regulation of vacuole organisation" EXACT [GOC:mah] is_a: GO:0033043 ! regulation of organelle organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007033 ! vacuole organization -relationship: regulates GO:0007033 ! vacuole organization +intersection_of: RO:0002211 GO:0007033 ! regulates (processual) vacuole organization +relationship: RO:0002211 GO:0007033 ! regulates (processual) vacuole organization [Term] id: GO:0044089 @@ -79320,8 +78945,8 @@ def: "Any process that activates or increases the frequency, rate or extent of c is_a: GO:0044087 ! regulation of cellular component biogenesis is_a: GO:0048522 ! positive regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0044085 ! cellular component biogenesis -relationship: positively_regulates GO:0044085 ! cellular component biogenesis +intersection_of: RO:0002213 GO:0044085 ! positively regulates cellular component biogenesis +relationship: RO:0002213 GO:0044085 ! positively regulates cellular component biogenesis [Term] id: GO:0044090 @@ -79333,8 +78958,8 @@ synonym: "positive regulation of vacuole organisation" EXACT [GOC:mah] is_a: GO:0010638 ! positive regulation of organelle organization is_a: GO:0044088 ! regulation of vacuole organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007033 ! vacuole organization -relationship: positively_regulates GO:0007033 ! vacuole organization +intersection_of: RO:0002213 GO:0007033 ! positively regulates vacuole organization +relationship: RO:0002213 GO:0007033 ! positively regulates vacuole organization [Term] id: GO:0044091 @@ -79343,8 +78968,8 @@ namespace: biological_process def: "A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a membrane." [GOC:jl] is_a: GO:0044085 ! cellular component biogenesis intersection_of: GO:0044085 ! cellular component biogenesis -intersection_of: has_primary_output GO:0016020 ! membrane -relationship: has_primary_output GO:0016020 ! membrane +intersection_of: RO:0004008 GO:0016020 ! has primary output membrane +relationship: RO:0004008 GO:0016020 ! has primary output membrane [Term] id: GO:0044092 @@ -79354,8 +78979,8 @@ def: "Any process that stops or reduces the rate or extent of a molecular functi subset: gocheck_do_not_annotate is_a: GO:0065009 ! regulation of molecular function intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003674 ! molecular_function -relationship: negatively_regulates GO:0003674 ! molecular_function +intersection_of: RO:0002212 GO:0003674 ! negatively regulates molecular_function +relationship: RO:0002212 GO:0003674 ! negatively regulates molecular_function created_by: jl creation_date: 2009-04-21T04:07:27Z @@ -79364,11 +78989,11 @@ id: GO:0044093 name: positive regulation of molecular function namespace: biological_process def: "Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding." [GO:jl] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate is_a: GO:0065009 ! regulation of molecular function intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003674 ! molecular_function -relationship: positively_regulates GO:0003674 ! molecular_function +intersection_of: RO:0002213 GO:0003674 ! positively regulates molecular_function +relationship: RO:0002213 GO:0003674 ! positively regulates molecular_function created_by: jl creation_date: 2009-04-21T04:11:06Z @@ -79384,18 +79009,6 @@ relationship: part_of GO:0005737 ! cytoplasm created_by: jl creation_date: 2009-10-22T02:38:55Z -[Term] -id: GO:0044237 -name: cellular metabolic process -namespace: biological_process -def: "The chemical reactions and pathways by which individual cells transform chemical substances." [GOC:go_curators] -comment: This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term. -subset: gocheck_do_not_annotate -synonym: "cellular metabolism" EXACT [] -synonym: "intermediary metabolism" RELATED [GOC:mah] -is_a: GO:0008152 ! metabolic process -is_a: GO:0009987 ! cellular process - [Term] id: GO:0044238 name: primary metabolic process @@ -79411,18 +79024,6 @@ xref: Wikipedia:Primary_metabolite is_a: GO:0008152 ! metabolic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI -[Term] -id: GO:0044242 -name: cellular lipid catabolic process -namespace: biological_process -def: "The chemical reactions and pathways resulting in the breakdown of lipids, as carried out by individual cells." [GOC:jl] -synonym: "cellular lipid breakdown" EXACT [] -synonym: "cellular lipid catabolism" EXACT [] -synonym: "cellular lipid degradation" EXACT [] -is_a: GO:0016042 ! lipid catabolic process -is_a: GO:0044248 ! cellular catabolic process -is_a: GO:0044255 ! cellular lipid metabolic process - [Term] id: GO:0044248 name: cellular catabolic process @@ -79432,32 +79033,6 @@ synonym: "cellular breakdown" EXACT [] synonym: "cellular catabolism" EXACT [] synonym: "cellular degradation" EXACT [] is_a: GO:0009056 ! catabolic process -is_a: GO:0044237 ! cellular metabolic process - -[Term] -id: GO:0044249 -name: cellular biosynthetic process -namespace: biological_process -def: "The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells." [GOC:jl] -comment: This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term. -subset: gocheck_do_not_annotate -synonym: "cellular anabolism" EXACT [] -synonym: "cellular biosynthesis" EXACT [] -synonym: "cellular formation" EXACT [] -synonym: "cellular synthesis" EXACT [] -is_a: GO:0009058 ! biosynthetic process -is_a: GO:0044237 ! cellular metabolic process -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27052" xsd:anyURI - -[Term] -id: GO:0044255 -name: cellular lipid metabolic process -namespace: biological_process -def: "The chemical reactions and pathways involving lipids, as carried out by individual cells." [GOC:jl] -subset: goslim_pir -synonym: "cellular lipid metabolism" EXACT [] -is_a: GO:0006629 ! lipid metabolic process -is_a: GO:0044237 ! cellular metabolic process [Term] id: GO:0044258 @@ -79469,8 +79044,8 @@ synonym: "intestinal lipid catabolism" EXACT [] synonym: "intestinal lipid degradation" EXACT [] is_a: GO:0016042 ! lipid catabolic process intersection_of: GO:0016042 ! lipid catabolic process -intersection_of: occurs_in UBERON:0000160 ! intestine -relationship: occurs_in UBERON:0000160 ! intestine +intersection_of: BFO:0000066 UBERON:0000160 ! occurs in intestine +relationship: BFO:0000066 UBERON:0000160 ! occurs in intestine [Term] id: GO:0044272 @@ -79484,10 +79059,10 @@ synonym: "sulfur compound biosynthesis" EXACT [] synonym: "sulfur compound formation" EXACT [] synonym: "sulfur compound synthesis" EXACT [] is_a: GO:0006790 ! sulfur compound metabolic process -is_a: GO:0044249 ! cellular biosynthetic process +is_a: GO:0009058 ! biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26835 ! sulfur molecular entity -relationship: has_primary_output CHEBI:26835 ! sulfur molecular entity +intersection_of: RO:0004008 CHEBI:26835 ! has primary output sulfur molecular entity +relationship: RO:0004008 CHEBI:26835 ! has primary output sulfur molecular entity [Term] id: GO:0044273 @@ -79502,8 +79077,8 @@ synonym: "sulfur compound degradation" EXACT [] is_a: GO:0006790 ! sulfur compound metabolic process is_a: GO:0044248 ! cellular catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:26835 ! sulfur molecular entity -relationship: has_primary_input CHEBI:26835 ! sulfur molecular entity +intersection_of: RO:0004009 CHEBI:26835 ! has primary input sulfur molecular entity +relationship: RO:0004009 CHEBI:26835 ! has primary input sulfur molecular entity [Term] id: GO:0044281 @@ -79555,7 +79130,7 @@ synonym: "cell soma" EXACT [] xref: FBbt:00005107 xref: FMA:67301 xref: Wikipedia:Cell_body -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: never_in_taxon NCBITaxon:4890 ! Ascomycota relationship: part_of CL:0000000 ! cell created_by: jl @@ -79570,7 +79145,7 @@ synonym: "axon shaft" RELATED [PMID:11264310, PMID:24312009] synonym: "axon trunk" EXACT [] synonym: "axonal shaft" RELATED [PMID:11264310, PMID:24312009] xref: NIF_Subcellular:sao1596975044 -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of GO:0030424 ! axon created_by: jl creation_date: 2010-02-05T03:48:17Z @@ -79584,8 +79159,8 @@ synonym: "pancreatic B cell proliferation" EXACT [GOC:mah] synonym: "pancreatic beta cell proliferation" EXACT [] is_a: GO:0050673 ! epithelial cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000169 ! type B pancreatic cell -relationship: acts_on_population_of CL:0000169 ! type B pancreatic cell +intersection_of: RO:0012003 CL:0000169 ! acts on population of type B pancreatic cell +relationship: RO:0012003 CL:0000169 ! acts on population of type B pancreatic cell created_by: jl creation_date: 2010-08-25T01:44:51Z @@ -79597,8 +79172,8 @@ def: "Any apoptotic process in a fibroblast, a connective tissue cell which secr synonym: "fibroblast apoptosis" NARROW [] is_a: GO:0006915 ! apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000057 ! fibroblast -relationship: occurs_in CL:0000057 ! fibroblast +intersection_of: BFO:0000066 CL:0000057 ! occurs in fibroblast +relationship: BFO:0000066 CL:0000057 ! occurs in fibroblast created_by: jl creation_date: 2010-09-23T11:33:38Z @@ -79610,8 +79185,8 @@ def: "A process in which a protein is transported to, or maintained in, a locati synonym: "protein localisation to cytoskeleton" EXACT [GOC:mah] is_a: GO:0033365 ! protein localization to organelle intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005856 ! cytoskeleton -relationship: has_target_end_location GO:0005856 ! cytoskeleton +intersection_of: RO:0002339 GO:0005856 ! has target end location cytoskeleton +relationship: RO:0002339 GO:0005856 ! has target end location cytoskeleton created_by: jl creation_date: 2011-12-13T11:43:24Z @@ -79645,8 +79220,8 @@ synonym: "nodal cilium assembly" RELATED [GOC:TermGenie] synonym: "nodal cilium formation" RELATED [GOC:TermGenie] is_a: GO:0060271 ! cilium assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0031514 ! motile cilium -relationship: results_in_assembly_of GO:0031514 ! motile cilium +intersection_of: RO:0002588 GO:0031514 ! results in assembly of motile cilium +relationship: RO:0002588 GO:0031514 ! results in assembly of motile cilium created_by: krc creation_date: 2015-02-06T17:23:23Z @@ -79679,8 +79254,8 @@ namespace: biological_process def: "The expansion of a dendritic cell population by cell division. A dendritic cell is a cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation." [CL:0000451, PMID:18469816] is_a: GO:0032943 ! mononuclear cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000451 ! dendritic cell -relationship: acts_on_population_of CL:0000451 ! dendritic cell +intersection_of: RO:0012003 CL:0000451 ! acts on population of dendritic cell +relationship: RO:0012003 CL:0000451 ! acts on population of dendritic cell created_by: jl creation_date: 2012-04-05T04:31:39Z @@ -79691,8 +79266,8 @@ namespace: biological_process def: "A change in the morphology or behavior of a chondrocyte resulting from exposure to an activating factor such as a cellular or soluble ligand. A chondrocyte is a polymorphic cell that forms cartilage." [CL:0000138, GOC:jl] is_a: GO:0001775 ! cell activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000138 ! chondrocyte -relationship: has_primary_input CL:0000138 ! chondrocyte +intersection_of: RO:0004009 CL:0000138 ! has primary input chondrocyte +relationship: RO:0004009 CL:0000138 ! has primary input chondrocyte created_by: jl creation_date: 2012-04-05T04:45:38Z @@ -79726,14 +79301,14 @@ is_a: GO:0033365 ! protein localization to organelle is_a: GO:0071806 ! protein transmembrane transport is_a: GO:0072594 ! establishment of protein localization to organelle intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input PR:000000001 ! protein -intersection_of: has_target_end_location GO:0043229 ! intracellular organelle -intersection_of: has_target_start_location GO:0005829 ! cytosol -intersection_of: results_in_transport_across GO:0031090 ! organelle membrane -relationship: has_primary_input PR:000000001 ! protein -relationship: has_target_end_location GO:0043229 ! intracellular organelle -relationship: has_target_start_location GO:0005829 ! cytosol -relationship: results_in_transport_across GO:0031090 ! organelle membrane +intersection_of: RO:0002338 GO:0005829 ! has target start location cytosol +intersection_of: RO:0002339 GO:0043229 ! has target end location intracellular organelle +intersection_of: RO:0002342 GO:0031090 ! results in transport across organelle membrane +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: RO:0002338 GO:0005829 ! has target start location cytosol +relationship: RO:0002339 GO:0043229 ! has target end location intracellular organelle +relationship: RO:0002342 GO:0031090 ! results in transport across organelle membrane +relationship: RO:0004009 PR:000000001 ! has primary input protein created_by: jl creation_date: 2012-11-07T15:37:36Z @@ -79749,10 +79324,10 @@ synonym: "microtubule-based flagellum organization" EXACT [] is_a: GO:0006996 ! organelle organization is_a: GO:0120036 ! plasma membrane bounded cell projection organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005929 ! cilium +intersection_of: RO:0002592 GO:0005929 ! results in organization of cilium relationship: in_taxon NCBITaxon:2759 {all_only="true"} ! Eukaryota -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota -relationship: results_in_organization_of GO:0005929 ! cilium +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota +relationship: RO:0002592 GO:0005929 ! results in organization of cilium created_by: jl creation_date: 2013-03-27T15:09:58Z @@ -79779,8 +79354,8 @@ namespace: biological_process def: "Any process in which a lipoprotein is transported to, or maintained in, a specific location." [GOC:jl] is_a: GO:0033036 ! macromolecule localization intersection_of: GO:0051179 ! localization -intersection_of: has_primary_input CHEBI:6495 ! lipoprotein -relationship: has_primary_input CHEBI:6495 ! lipoprotein +intersection_of: RO:0004009 CHEBI:6495 ! has primary input lipoprotein +relationship: RO:0004009 CHEBI:6495 ! has primary input lipoprotein created_by: jl creation_date: 2014-11-25T16:27:06Z @@ -79792,8 +79367,8 @@ def: "A process in which a lipoprotein is transported to, or maintained in, a sp is_a: GO:0044872 ! lipoprotein localization is_a: GO:0051668 ! localization within membrane intersection_of: GO:0044872 ! lipoprotein localization -intersection_of: has_target_end_location GO:0016020 ! membrane -relationship: has_target_end_location GO:0016020 ! membrane +intersection_of: RO:0002339 GO:0016020 ! has target end location membrane +relationship: RO:0002339 GO:0016020 ! has target end location membrane created_by: jl creation_date: 2014-11-25T16:28:43Z @@ -79804,8 +79379,8 @@ namespace: biological_process def: "A process in which a lipoprotein is transported to, or maintained in, a specific location in an outer membrane." [GOC:jl] is_a: GO:0044873 ! lipoprotein localization to membrane intersection_of: GO:0044872 ! lipoprotein localization -intersection_of: has_target_end_location GO:0019867 ! outer membrane -relationship: has_target_end_location GO:0019867 ! outer membrane +intersection_of: RO:0002339 GO:0019867 ! has target end location outer membrane +relationship: RO:0002339 GO:0019867 ! has target end location outer membrane created_by: jl creation_date: 2014-11-25T16:30:30Z @@ -79820,8 +79395,8 @@ synonym: "macromolecular complex binding" RELATED [] synonym: "protein complex binding" EXACT [] is_a: GO:0005488 ! binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input GO:0032991 ! protein-containing complex -relationship: has_primary_input GO:0032991 ! protein-containing complex +intersection_of: RO:0004009 GO:0032991 ! has primary input protein-containing complex +relationship: RO:0004009 GO:0032991 ! has primary input protein-containing complex created_by: jl creation_date: 2014-12-16T11:38:58Z @@ -79843,8 +79418,8 @@ synonym: "cell-cell fusion" BROAD [] is_a: GO:0007009 ! plasma membrane organization is_a: GO:0061025 ! membrane fusion intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_fusion_of GO:0005886 ! plasma membrane -relationship: results_in_fusion_of GO:0005886 ! plasma membrane +intersection_of: RO:0012008 GO:0005886 ! results in fusion of plasma membrane +relationship: RO:0012008 GO:0005886 ! results in fusion of plasma membrane [Term] id: GO:0045028 @@ -79860,9 +79435,9 @@ synonym: "purinergic nucleotide receptor activity, G-protein coupled" EXACT [GOC is_a: GO:0001614 ! purinergic nucleotide receptor activity is_a: GO:0004930 ! G protein-coupled receptor activity intersection_of: GO:0004930 ! G protein-coupled receptor activity -intersection_of: has_primary_input CHEBI:26395 ! purine nucleotide -relationship: has_primary_input CHEBI:26395 ! purine nucleotide +intersection_of: RO:0004009 CHEBI:26395 ! has primary input purine nucleotide relationship: part_of GO:0035589 ! G protein-coupled purinergic nucleotide receptor signaling pathway +relationship: RO:0004009 CHEBI:26395 ! has primary input purine nucleotide [Term] id: GO:0045031 @@ -79873,8 +79448,8 @@ synonym: "ATP-activated adenosine receptor activity" RELATED [] synonym: "ATP-activated nucleotide receptor activity" BROAD [] is_a: GO:0004930 ! G protein-coupled receptor activity intersection_of: GO:0004930 ! G protein-coupled receptor activity -intersection_of: has_primary_input CHEBI:30616 ! ATP(4-) -relationship: has_primary_input CHEBI:30616 ! ATP(4-) +intersection_of: RO:0004009 CHEBI:30616 ! has primary input ATP(4-) +relationship: RO:0004009 CHEBI:30616 ! has primary input ATP(4-) [Term] id: GO:0045055 @@ -79894,8 +79469,8 @@ synonym: "T-cell selection" EXACT [] synonym: "T-lymphocyte selection" EXACT [] xref: Wikipedia:Thymocyte is_a: GO:0002376 ! immune system process -relationship: has_participant CL:0000084 ! T cell relationship: part_of GO:0030217 ! T cell differentiation +relationship: RO:0000057 CL:0000084 ! has participant T cell [Term] id: GO:0045087 @@ -79908,7 +79483,9 @@ synonym: "nonspecific immune response" EXACT [] xref: Wikipedia:Innate_immune_system is_a: GO:0006955 ! immune response is_a: GO:0140546 ! defense response to symbiont -relationship: never_in_taxon NCBITaxon_Union:0000023 +relationship: never_in_taxon NCBITaxon:2 ! Bacteria +relationship: never_in_taxon NCBITaxon:2157 ! Archaea +relationship: never_in_taxon NCBITaxon:4751 ! Fungi [Term] id: GO:0045088 @@ -79920,8 +79497,8 @@ is_a: GO:0031347 ! regulation of defense response is_a: GO:0032101 ! regulation of response to external stimulus is_a: GO:0050776 ! regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0045087 ! innate immune response -relationship: regulates GO:0045087 ! innate immune response +intersection_of: RO:0002211 GO:0045087 ! regulates (processual) innate immune response +relationship: RO:0002211 GO:0045087 ! regulates (processual) innate immune response [Term] id: GO:0045089 @@ -79938,8 +79515,8 @@ is_a: GO:0032103 ! positive regulation of response to external stimulus is_a: GO:0045088 ! regulation of innate immune response is_a: GO:0050778 ! positive regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0045087 ! innate immune response -relationship: positively_regulates GO:0045087 ! innate immune response +intersection_of: RO:0002213 GO:0045087 ! positively regulates innate immune response +relationship: RO:0002213 GO:0045087 ! positively regulates innate immune response [Term] id: GO:0045095 @@ -79967,8 +79544,8 @@ synonym: "intermediate filament cytoskeleton organization and biogenesis" RELATE is_a: GO:0007010 ! cytoskeleton organization is_a: GO:0045103 ! intermediate filament-based process intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0045111 ! intermediate filament cytoskeleton -relationship: results_in_organization_of GO:0045111 ! intermediate filament cytoskeleton +intersection_of: RO:0002592 GO:0045111 ! results in organization of intermediate filament cytoskeleton +relationship: RO:0002592 GO:0045111 ! results in organization of intermediate filament cytoskeleton [Term] id: GO:0045109 @@ -79979,8 +79556,8 @@ synonym: "intermediate filament organisation" EXACT [] is_a: GO:0045104 ! intermediate filament cytoskeleton organization is_a: GO:0097435 ! supramolecular fiber organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005882 ! intermediate filament -relationship: results_in_organization_of GO:0005882 ! intermediate filament +intersection_of: RO:0002592 GO:0005882 ! results in organization of intermediate filament +relationship: RO:0002592 GO:0005882 ! results in organization of intermediate filament [Term] id: GO:0045110 @@ -79991,8 +79568,8 @@ synonym: "tonofilament assembly" NARROW [] is_a: GO:0022607 ! cellular component assembly is_a: GO:0045109 ! intermediate filament organization intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_organization_of GO:0005882 ! intermediate filament -relationship: results_in_organization_of GO:0005882 ! intermediate filament +intersection_of: RO:0002592 GO:0005882 ! results in organization of intermediate filament +relationship: RO:0002592 GO:0005882 ! results in organization of intermediate filament [Term] id: GO:0045111 @@ -80010,10 +79587,10 @@ synonym: "azole transport" RELATED [] is_a: GO:0055085 ! transmembrane transport is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:68452 ! azole -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:68452 ! azole -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:68452 ! has primary input azole +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:68452 ! has primary input azole [Term] id: GO:0045120 @@ -80023,7 +79600,7 @@ def: "The nucleus of either the ovum or the spermatozoon following fertilization xref: Wikipedia:Pronucleus is_a: GO:0005634 ! nucleus relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa [Term] id: GO:0045124 @@ -80032,9 +79609,9 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of bone tissue loss (resorption)." [GOC:ai] is_a: GO:0046850 ! regulation of bone remodeling intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0045453 ! bone resorption -relationship: regulates GO:0045453 ! bone resorption -relationship: regulates GO:0046849 ! bone remodeling +intersection_of: RO:0002211 GO:0045453 ! regulates (processual) bone resorption +relationship: RO:0002211 GO:0045453 ! regulates (processual) bone resorption +relationship: RO:0002211 GO:0046849 ! regulates (processual) bone remodeling [Term] id: GO:0045132 @@ -80106,8 +79683,8 @@ synonym: "protein positioning" EXACT [] synonym: "protein recruitment" EXACT [] is_a: GO:0051234 ! establishment of localization intersection_of: GO:0051234 ! establishment of localization -intersection_of: has_primary_input CHEBI:36080 ! protein -relationship: has_primary_input CHEBI:36080 ! protein +intersection_of: RO:0004009 CHEBI:36080 ! has primary input protein +relationship: RO:0004009 CHEBI:36080 ! has primary input protein [Term] id: GO:0045185 @@ -80129,8 +79706,8 @@ def: "Any process that modulates the frequency, rate or extent of sleep; a readi synonym: "regulation of sleep" EXACT [] is_a: GO:0042749 ! regulation of circadian sleep/wake cycle intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0050802 ! circadian sleep/wake cycle, sleep -relationship: regulates GO:0050802 ! circadian sleep/wake cycle, sleep +intersection_of: RO:0002211 GO:0050802 ! regulates (processual) circadian sleep/wake cycle, sleep +relationship: RO:0002211 GO:0050802 ! regulates (processual) circadian sleep/wake cycle, sleep [Term] id: GO:0045188 @@ -80140,8 +79717,8 @@ def: "Any process that modulates the frequency, rate or extent of non-rapid eye synonym: "regulation of non-REM sleep" EXACT [] is_a: GO:0045187 ! regulation of circadian sleep/wake cycle, sleep intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042748 ! circadian sleep/wake cycle, non-REM sleep -relationship: regulates GO:0042748 ! circadian sleep/wake cycle, non-REM sleep +intersection_of: RO:0002211 GO:0042748 ! regulates (processual) circadian sleep/wake cycle, non-REM sleep +relationship: RO:0002211 GO:0042748 ! regulates (processual) circadian sleep/wake cycle, non-REM sleep [Term] id: GO:0045190 @@ -80169,10 +79746,10 @@ is_a: GO:0002637 ! regulation of immunoglobulin production is_a: GO:0002889 ! regulation of immunoglobulin mediated immune response is_a: GO:0050864 ! regulation of B cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0045190 ! isotype switching -relationship: regulates GO:0002377 ! immunoglobulin production -relationship: regulates GO:0016064 ! immunoglobulin mediated immune response -relationship: regulates GO:0045190 ! isotype switching +intersection_of: RO:0002211 GO:0045190 ! regulates (processual) isotype switching +relationship: RO:0002211 GO:0002377 ! regulates (processual) immunoglobulin production +relationship: RO:0002211 GO:0016064 ! regulates (processual) immunoglobulin mediated immune response +relationship: RO:0002211 GO:0045190 ! regulates (processual) isotype switching [Term] id: GO:0045196 @@ -80196,8 +79773,8 @@ synonym: "establishment of neuroblast cell polarity" EXACT [] is_a: GO:0030010 ! establishment of cell polarity is_a: GO:0045196 ! establishment or maintenance of neuroblast polarity intersection_of: GO:0030010 ! establishment of cell polarity -intersection_of: occurs_in CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: occurs_in CL:0000031 ! neuroblast (sensu Vertebrata) +intersection_of: BFO:0000066 CL:0000031 ! occurs in neuroblast (sensu Vertebrata) +relationship: BFO:0000066 CL:0000031 ! occurs in neuroblast (sensu Vertebrata) [Term] id: GO:0045202 @@ -80218,7 +79795,7 @@ xref: NIF_Subcellular:sao914572699 xref: Wikipedia:Chemical_synapse is_a: GO:0030054 ! cell junction relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa [Term] id: GO:0045211 @@ -80240,9 +79817,9 @@ synonym: "sarcomere alignment" EXACT [] synonym: "sarcomere organisation" EXACT [] is_a: GO:0031032 ! actomyosin structure organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0030017 ! sarcomere +intersection_of: RO:0002592 GO:0030017 ! results in organization of sarcomere relationship: part_of GO:0030239 ! myofibril assembly -relationship: results_in_organization_of GO:0030017 ! sarcomere +relationship: RO:0002592 GO:0030017 ! results in organization of sarcomere [Term] id: GO:0045216 @@ -80255,8 +79832,8 @@ synonym: "cell-cell junction organisation" EXACT [GOC:mah] synonym: "intercellular junction assembly and maintenance" EXACT [] is_a: GO:0034330 ! cell junction organization intersection_of: GO:0034330 ! cell junction organization -intersection_of: results_in_organization_of GO:0005911 ! cell-cell junction -relationship: results_in_organization_of GO:0005911 ! cell-cell junction +intersection_of: RO:0002592 GO:0005911 ! results in organization of cell-cell junction +relationship: RO:0002592 GO:0005911 ! results in organization of cell-cell junction [Term] id: GO:0045222 @@ -80269,10 +79846,9 @@ synonym: "CD4 formation" EXACT [] synonym: "CD4 synthesis" EXACT [] is_a: GO:0009101 ! glycoprotein biosynthetic process is_a: GO:0019538 ! protein metabolic process -is_a: GO:1901566 ! organonitrogen compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output PR:000001004 ! CD4 molecule -relationship: has_primary_output PR:000001004 ! CD4 molecule +intersection_of: RO:0004008 PR:000001004 ! has primary output CD4 molecule +relationship: RO:0004008 PR:000001004 ! has primary output CD4 molecule [Term] id: GO:0045223 @@ -80287,8 +79863,8 @@ synonym: "regulation of CD4 synthesis" EXACT [] is_a: GO:0010559 ! regulation of glycoprotein biosynthetic process is_a: GO:0051246 ! regulation of protein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0045222 ! CD4 biosynthetic process -relationship: regulates GO:0045222 ! CD4 biosynthetic process +intersection_of: RO:0002211 GO:0045222 ! regulates (processual) CD4 biosynthetic process +relationship: RO:0002211 GO:0045222 ! regulates (processual) CD4 biosynthetic process [Term] id: GO:0045224 @@ -80309,8 +79885,8 @@ is_a: GO:0010560 ! positive regulation of glycoprotein biosynthetic process is_a: GO:0045223 ! regulation of CD4 production is_a: GO:0051247 ! positive regulation of protein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0045222 ! CD4 biosynthetic process -relationship: positively_regulates GO:0045222 ! CD4 biosynthetic process +intersection_of: RO:0002213 GO:0045222 ! positively regulates CD4 biosynthetic process +relationship: RO:0002213 GO:0045222 ! positively regulates CD4 biosynthetic process [Term] id: GO:0045225 @@ -80330,8 +79906,8 @@ is_a: GO:0010561 ! negative regulation of glycoprotein biosynthetic process is_a: GO:0045223 ! regulation of CD4 production is_a: GO:0051248 ! negative regulation of protein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0045222 ! CD4 biosynthetic process -relationship: negatively_regulates GO:0045222 ! CD4 biosynthetic process +intersection_of: RO:0002212 GO:0045222 ! negatively regulates CD4 biosynthetic process +relationship: RO:0002212 GO:0045222 ! negatively regulates CD4 biosynthetic process [Term] id: GO:0045229 @@ -80343,8 +79919,8 @@ synonym: "external encapsulating structure organisation" EXACT [] synonym: "external encapsulating structure organization and biogenesis" EXACT [GOC:dph, GOC:jl, GOC:mah] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0030312 ! external encapsulating structure -relationship: results_in_organization_of GO:0030312 ! external encapsulating structure +intersection_of: RO:0002592 GO:0030312 ! results in organization of external encapsulating structure +relationship: RO:0002592 GO:0030312 ! results in organization of external encapsulating structure [Term] id: GO:0045296 @@ -80353,8 +79929,8 @@ namespace: molecular_function def: "Binding to cadherin, a type I membrane protein involved in cell adhesion." [GOC:bf] is_a: GO:0050839 ! cell adhesion molecule binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input PR:000001327 ! cadherin -relationship: has_primary_input PR:000001327 ! cadherin +intersection_of: RO:0004009 PR:000001327 ! has primary input cadherin +relationship: RO:0004009 PR:000001327 ! has primary input cadherin [Term] id: GO:0045299 @@ -80363,9 +79939,9 @@ namespace: biological_process def: "The precipitation of specific crystal forms of calcium carbonate with extracellular matrix proteins in the otolith organs of the vertebrate inner ear." [GOC:dsf, PMID:15581873] is_a: GO:0031214 ! biomineral tissue development intersection_of: GO:0031214 ! biomineral tissue development -intersection_of: results_in_maturation_of UBERON:0002280 ! otolith +intersection_of: RO:0002299 UBERON:0002280 ! results in maturation of otolith relationship: part_of GO:0048840 ! otolith development -relationship: results_in_maturation_of UBERON:0002280 ! otolith +relationship: RO:0002299 UBERON:0002280 ! results in maturation of otolith [Term] id: GO:0045321 @@ -80378,10 +79954,10 @@ xref: Wikipedia:Immunologic_activation is_a: GO:0001775 ! cell activation is_a: GO:0002376 ! immune system process intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000738 ! leukocyte -relationship: has_primary_input CL:0000738 ! leukocyte +intersection_of: RO:0004009 CL:0000738 ! has primary input leukocyte relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata +relationship: RO:0004009 CL:0000738 ! has primary input leukocyte [Term] id: GO:0045443 @@ -80392,8 +79968,8 @@ is_a: GO:0046865 ! terpenoid transport is_a: GO:0060986 ! endocrine hormone secretion is_a: GO:0140353 ! lipid export from cell intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:24943 ! juvenile hormone -relationship: has_primary_input CHEBI:24943 ! juvenile hormone +intersection_of: RO:0004009 CHEBI:24943 ! has primary input juvenile hormone +relationship: RO:0004009 CHEBI:24943 ! has primary input juvenile hormone [Term] id: GO:0045444 @@ -80406,8 +79982,8 @@ synonym: "adipogenesis" RELATED [] synonym: "adipose cell differentiation" EXACT [] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000136 ! adipocyte -relationship: results_in_acquisition_of_features_of CL:0000136 ! adipocyte +intersection_of: RO:0002315 CL:0000136 ! results in acquisition of features of adipocyte +relationship: RO:0002315 CL:0000136 ! results in acquisition of features of adipocyte [Term] id: GO:0045445 @@ -80417,9 +79993,9 @@ def: "The process in which a relatively unspecialized cell acquires specialized synonym: "myoblast cell differentiation" EXACT [] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000056 ! myoblast +intersection_of: RO:0002315 CL:0000056 ! results in acquisition of features of myoblast relationship: part_of GO:0061061 ! muscle structure development -relationship: results_in_acquisition_of_features_of CL:0000056 ! myoblast +relationship: RO:0002315 CL:0000056 ! results in acquisition of features of myoblast [Term] id: GO:0045446 @@ -80428,9 +80004,9 @@ namespace: biological_process def: "The process in which a mesodermal, bone marrow or neural crest cell acquires specialized features of an endothelial cell, a thin flattened cell. A layer of such cells lines the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium." [CL:0000115, GOC:go_curators] is_a: GO:0030855 ! epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000115 ! endothelial cell +intersection_of: RO:0002315 CL:0000115 ! results in acquisition of features of endothelial cell relationship: part_of GO:0003158 ! endothelium development -relationship: results_in_acquisition_of_features_of CL:0000115 ! endothelial cell +relationship: RO:0002315 CL:0000115 ! results in acquisition of features of endothelial cell [Term] id: GO:0045453 @@ -80448,8 +80024,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the growth of the imaginal disc." [GOC:go_curators] is_a: GO:0048638 ! regulation of developmental growth intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007446 ! imaginal disc growth -relationship: regulates GO:0007446 ! imaginal disc growth +intersection_of: RO:0002211 GO:0007446 ! regulates (processual) imaginal disc growth +relationship: RO:0002211 GO:0007446 ! regulates (processual) imaginal disc growth [Term] id: GO:0045571 @@ -80463,8 +80039,8 @@ synonym: "inhibition of imaginal disc growth" NARROW [] is_a: GO:0045570 ! regulation of imaginal disc growth is_a: GO:0048640 ! negative regulation of developmental growth intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007446 ! imaginal disc growth -relationship: negatively_regulates GO:0007446 ! imaginal disc growth +intersection_of: RO:0002212 GO:0007446 ! negatively regulates imaginal disc growth +relationship: RO:0002212 GO:0007446 ! negatively regulates imaginal disc growth [Term] id: GO:0045572 @@ -80479,8 +80055,8 @@ synonym: "upregulation of imaginal disc growth" EXACT [] is_a: GO:0045570 ! regulation of imaginal disc growth is_a: GO:0048639 ! positive regulation of developmental growth intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007446 ! imaginal disc growth -relationship: positively_regulates GO:0007446 ! imaginal disc growth +intersection_of: RO:0002213 GO:0007446 ! positively regulates imaginal disc growth +relationship: RO:0002213 GO:0007446 ! positively regulates imaginal disc growth [Term] id: GO:0045577 @@ -80495,8 +80071,8 @@ synonym: "regulation of B-lymphocyte differentiation" EXACT [] is_a: GO:0045619 ! regulation of lymphocyte differentiation is_a: GO:0050864 ! regulation of B cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030183 ! B cell differentiation -relationship: regulates GO:0030183 ! B cell differentiation +intersection_of: RO:0002211 GO:0030183 ! regulates (processual) B cell differentiation +relationship: RO:0002211 GO:0030183 ! regulates (processual) B cell differentiation [Term] id: GO:0045578 @@ -80516,8 +80092,8 @@ is_a: GO:0045577 ! regulation of B cell differentiation is_a: GO:0045620 ! negative regulation of lymphocyte differentiation is_a: GO:0050869 ! negative regulation of B cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030183 ! B cell differentiation -relationship: negatively_regulates GO:0030183 ! B cell differentiation +intersection_of: RO:0002212 GO:0030183 ! negatively regulates B cell differentiation +relationship: RO:0002212 GO:0030183 ! negatively regulates B cell differentiation [Term] id: GO:0045579 @@ -80538,8 +80114,8 @@ is_a: GO:0045577 ! regulation of B cell differentiation is_a: GO:0045621 ! positive regulation of lymphocyte differentiation is_a: GO:0050871 ! positive regulation of B cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030183 ! B cell differentiation -relationship: positively_regulates GO:0030183 ! B cell differentiation +intersection_of: RO:0002213 GO:0030183 ! positively regulates B cell differentiation +relationship: RO:0002213 GO:0030183 ! positively regulates B cell differentiation [Term] id: GO:0045580 @@ -80554,8 +80130,8 @@ synonym: "regulation of T-lymphocyte differentiation" EXACT [] is_a: GO:0045619 ! regulation of lymphocyte differentiation is_a: GO:0050863 ! regulation of T cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030217 ! T cell differentiation -relationship: regulates GO:0030217 ! T cell differentiation +intersection_of: RO:0002211 GO:0030217 ! regulates (processual) T cell differentiation +relationship: RO:0002211 GO:0030217 ! regulates (processual) T cell differentiation [Term] id: GO:0045581 @@ -80575,8 +80151,8 @@ is_a: GO:0045580 ! regulation of T cell differentiation is_a: GO:0045620 ! negative regulation of lymphocyte differentiation is_a: GO:0050868 ! negative regulation of T cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030217 ! T cell differentiation -relationship: negatively_regulates GO:0030217 ! T cell differentiation +intersection_of: RO:0002212 GO:0030217 ! negatively regulates T cell differentiation +relationship: RO:0002212 GO:0030217 ! negatively regulates T cell differentiation [Term] id: GO:0045582 @@ -80597,8 +80173,8 @@ is_a: GO:0045580 ! regulation of T cell differentiation is_a: GO:0045621 ! positive regulation of lymphocyte differentiation is_a: GO:0050870 ! positive regulation of T cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030217 ! T cell differentiation -relationship: positively_regulates GO:0030217 ! T cell differentiation +intersection_of: RO:0002213 GO:0030217 ! positively regulates T cell differentiation +relationship: RO:0002213 GO:0030217 ! positively regulates T cell differentiation [Term] id: GO:0045595 @@ -80608,8 +80184,8 @@ def: "Any process that modulates the frequency, rate or extent of cell different is_a: GO:0050793 ! regulation of developmental process is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030154 ! cell differentiation -relationship: regulates GO:0030154 ! cell differentiation +intersection_of: RO:0002211 GO:0030154 ! regulates (processual) cell differentiation +relationship: RO:0002211 GO:0030154 ! regulates (processual) cell differentiation [Term] id: GO:0045596 @@ -80624,8 +80200,8 @@ is_a: GO:0045595 ! regulation of cell differentiation is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:0051093 ! negative regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030154 ! cell differentiation -relationship: negatively_regulates GO:0030154 ! cell differentiation +intersection_of: RO:0002212 GO:0030154 ! negatively regulates cell differentiation +relationship: RO:0002212 GO:0030154 ! negatively regulates cell differentiation [Term] id: GO:0045597 @@ -80641,8 +80217,8 @@ is_a: GO:0045595 ! regulation of cell differentiation is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0051094 ! positive regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030154 ! cell differentiation -relationship: positively_regulates GO:0030154 ! cell differentiation +intersection_of: RO:0002213 GO:0030154 ! positively regulates cell differentiation +relationship: RO:0002213 GO:0030154 ! positively regulates cell differentiation [Term] id: GO:0045598 @@ -80653,8 +80229,8 @@ synonym: "regulation of adipocyte cell differentiation" EXACT [] synonym: "regulation of adipocyte differentiation" EXACT [] is_a: GO:0045595 ! regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0045444 ! fat cell differentiation -relationship: regulates GO:0045444 ! fat cell differentiation +intersection_of: RO:0002211 GO:0045444 ! regulates (processual) fat cell differentiation +relationship: RO:0002211 GO:0045444 ! regulates (processual) fat cell differentiation [Term] id: GO:0045599 @@ -80670,8 +80246,8 @@ synonym: "negative regulation of adipocyte differentiation" EXACT [] is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:0045598 ! regulation of fat cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0045444 ! fat cell differentiation -relationship: negatively_regulates GO:0045444 ! fat cell differentiation +intersection_of: RO:0002212 GO:0045444 ! negatively regulates fat cell differentiation +relationship: RO:0002212 GO:0045444 ! negatively regulates fat cell differentiation [Term] id: GO:0045600 @@ -80688,8 +80264,8 @@ synonym: "upregulation of fat cell differentiation" EXACT [] is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:0045598 ! regulation of fat cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0045444 ! fat cell differentiation -relationship: positively_regulates GO:0045444 ! fat cell differentiation +intersection_of: RO:0002213 GO:0045444 ! positively regulates fat cell differentiation +relationship: RO:0002213 GO:0045444 ! positively regulates fat cell differentiation [Term] id: GO:0045601 @@ -80698,8 +80274,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of endothelial cell differentiation." [GOC:go_curators] is_a: GO:0030856 ! regulation of epithelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0045446 ! endothelial cell differentiation -relationship: regulates GO:0045446 ! endothelial cell differentiation +intersection_of: RO:0002211 GO:0045446 ! regulates (processual) endothelial cell differentiation +relationship: RO:0002211 GO:0045446 ! regulates (processual) endothelial cell differentiation [Term] id: GO:0045602 @@ -80713,8 +80289,8 @@ synonym: "inhibition of endothelial cell differentiation" NARROW [] is_a: GO:0030857 ! negative regulation of epithelial cell differentiation is_a: GO:0045601 ! regulation of endothelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0045446 ! endothelial cell differentiation -relationship: negatively_regulates GO:0045446 ! endothelial cell differentiation +intersection_of: RO:0002212 GO:0045446 ! negatively regulates endothelial cell differentiation +relationship: RO:0002212 GO:0045446 ! negatively regulates endothelial cell differentiation [Term] id: GO:0045603 @@ -80729,8 +80305,8 @@ synonym: "upregulation of endothelial cell differentiation" EXACT [] is_a: GO:0030858 ! positive regulation of epithelial cell differentiation is_a: GO:0045601 ! regulation of endothelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0045446 ! endothelial cell differentiation -relationship: positively_regulates GO:0045446 ! endothelial cell differentiation +intersection_of: RO:0002213 GO:0045446 ! positively regulates endothelial cell differentiation +relationship: RO:0002213 GO:0045446 ! positively regulates endothelial cell differentiation [Term] id: GO:0045604 @@ -80741,8 +80317,8 @@ synonym: "regulation of hypodermal cell differentiation" RELATED [GOC:kmv, GOC:r is_a: GO:0030856 ! regulation of epithelial cell differentiation is_a: GO:0045682 ! regulation of epidermis development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009913 ! epidermal cell differentiation -relationship: regulates GO:0009913 ! epidermal cell differentiation +intersection_of: RO:0002211 GO:0009913 ! regulates (processual) epidermal cell differentiation +relationship: RO:0002211 GO:0009913 ! regulates (processual) epidermal cell differentiation [Term] id: GO:0045605 @@ -80758,8 +80334,8 @@ is_a: GO:0030857 ! negative regulation of epithelial cell differentiation is_a: GO:0045604 ! regulation of epidermal cell differentiation is_a: GO:0045683 ! negative regulation of epidermis development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009913 ! epidermal cell differentiation -relationship: negatively_regulates GO:0009913 ! epidermal cell differentiation +intersection_of: RO:0002212 GO:0009913 ! negatively regulates epidermal cell differentiation +relationship: RO:0002212 GO:0009913 ! negatively regulates epidermal cell differentiation [Term] id: GO:0045606 @@ -80776,8 +80352,8 @@ is_a: GO:0030858 ! positive regulation of epithelial cell differentiation is_a: GO:0045604 ! regulation of epidermal cell differentiation is_a: GO:0045684 ! positive regulation of epidermis development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009913 ! epidermal cell differentiation -relationship: positively_regulates GO:0009913 ! epidermal cell differentiation +intersection_of: RO:0002213 GO:0009913 ! positively regulates epidermal cell differentiation +relationship: RO:0002213 GO:0009913 ! positively regulates epidermal cell differentiation [Term] id: GO:0045607 @@ -80789,8 +80365,8 @@ synonym: "regulation of auditory receptor cell differentiation" RELATED [] is_a: GO:0045604 ! regulation of epidermal cell differentiation is_a: GO:2000980 ! regulation of inner ear receptor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042491 ! inner ear auditory receptor cell differentiation -relationship: regulates GO:0042491 ! inner ear auditory receptor cell differentiation +intersection_of: RO:0002211 GO:0042491 ! regulates (processual) inner ear auditory receptor cell differentiation +relationship: RO:0002211 GO:0042491 ! regulates (processual) inner ear auditory receptor cell differentiation [Term] id: GO:0045608 @@ -80807,8 +80383,8 @@ is_a: GO:0045605 ! negative regulation of epidermal cell differentiation is_a: GO:0045607 ! regulation of inner ear auditory receptor cell differentiation is_a: GO:2000981 ! negative regulation of inner ear receptor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042491 ! inner ear auditory receptor cell differentiation -relationship: negatively_regulates GO:0042491 ! inner ear auditory receptor cell differentiation +intersection_of: RO:0002212 GO:0042491 ! negatively regulates inner ear auditory receptor cell differentiation +relationship: RO:0002212 GO:0042491 ! negatively regulates inner ear auditory receptor cell differentiation [Term] id: GO:0045609 @@ -80826,8 +80402,8 @@ is_a: GO:0045606 ! positive regulation of epidermal cell differentiation is_a: GO:0045607 ! regulation of inner ear auditory receptor cell differentiation is_a: GO:2000982 ! positive regulation of inner ear receptor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042491 ! inner ear auditory receptor cell differentiation -relationship: positively_regulates GO:0042491 ! inner ear auditory receptor cell differentiation +intersection_of: RO:0002213 GO:0042491 ! positively regulates inner ear auditory receptor cell differentiation +relationship: RO:0002213 GO:0042491 ! positively regulates inner ear auditory receptor cell differentiation [Term] id: GO:0045610 @@ -80839,8 +80415,8 @@ is_a: GO:0002682 ! regulation of immune system process is_a: GO:0045595 ! regulation of cell differentiation is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042386 ! hemocyte differentiation -relationship: regulates GO:0042386 ! hemocyte differentiation +intersection_of: RO:0002211 GO:0042386 ! regulates (processual) hemocyte differentiation +relationship: RO:0002211 GO:0042386 ! regulates (processual) hemocyte differentiation [Term] id: GO:0045611 @@ -80856,8 +80432,8 @@ is_a: GO:0002683 ! negative regulation of immune system process is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:0045610 ! regulation of hemocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042386 ! hemocyte differentiation -relationship: negatively_regulates GO:0042386 ! hemocyte differentiation +intersection_of: RO:0002212 GO:0042386 ! negatively regulates hemocyte differentiation +relationship: RO:0002212 GO:0042386 ! negatively regulates hemocyte differentiation [Term] id: GO:0045612 @@ -80874,8 +80450,8 @@ is_a: GO:0002684 ! positive regulation of immune system process is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:0045610 ! regulation of hemocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042386 ! hemocyte differentiation -relationship: positively_regulates GO:0042386 ! hemocyte differentiation +intersection_of: RO:0002213 GO:0042386 ! positively regulates hemocyte differentiation +relationship: RO:0002213 GO:0042386 ! positively regulates hemocyte differentiation [Term] id: GO:0045616 @@ -80884,8 +80460,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of keratinocyte differentiation." [GOC:go_curators] is_a: GO:0045604 ! regulation of epidermal cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030216 ! keratinocyte differentiation -relationship: regulates GO:0030216 ! keratinocyte differentiation +intersection_of: RO:0002211 GO:0030216 ! regulates (processual) keratinocyte differentiation +relationship: RO:0002211 GO:0030216 ! regulates (processual) keratinocyte differentiation [Term] id: GO:0045617 @@ -80900,8 +80476,8 @@ is_a: GO:0045605 ! negative regulation of epidermal cell differentiation is_a: GO:0045616 ! regulation of keratinocyte differentiation is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030216 ! keratinocyte differentiation -relationship: negatively_regulates GO:0030216 ! keratinocyte differentiation +intersection_of: RO:0002212 GO:0030216 ! negatively regulates keratinocyte differentiation +relationship: RO:0002212 GO:0030216 ! negatively regulates keratinocyte differentiation [Term] id: GO:0045618 @@ -80917,8 +80493,8 @@ is_a: GO:0045606 ! positive regulation of epidermal cell differentiation is_a: GO:0045616 ! regulation of keratinocyte differentiation is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030216 ! keratinocyte differentiation -relationship: positively_regulates GO:0030216 ! keratinocyte differentiation +intersection_of: RO:0002213 GO:0030216 ! positively regulates keratinocyte differentiation +relationship: RO:0002213 GO:0030216 ! positively regulates keratinocyte differentiation [Term] id: GO:0045619 @@ -80930,8 +80506,8 @@ synonym: "regulation of lymphocyte development" RELATED [GOC:add] is_a: GO:0051249 ! regulation of lymphocyte activation is_a: GO:1902105 ! regulation of leukocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030098 ! lymphocyte differentiation -relationship: regulates GO:0030098 ! lymphocyte differentiation +intersection_of: RO:0002211 GO:0030098 ! regulates (processual) lymphocyte differentiation +relationship: RO:0002211 GO:0030098 ! regulates (processual) lymphocyte differentiation [Term] id: GO:0045620 @@ -80948,8 +80524,8 @@ is_a: GO:0045619 ! regulation of lymphocyte differentiation is_a: GO:0051250 ! negative regulation of lymphocyte activation is_a: GO:1902106 ! negative regulation of leukocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030098 ! lymphocyte differentiation -relationship: negatively_regulates GO:0030098 ! lymphocyte differentiation +intersection_of: RO:0002212 GO:0030098 ! negatively regulates lymphocyte differentiation +relationship: RO:0002212 GO:0030098 ! negatively regulates lymphocyte differentiation [Term] id: GO:0045621 @@ -80967,8 +80543,8 @@ is_a: GO:0045619 ! regulation of lymphocyte differentiation is_a: GO:0051251 ! positive regulation of lymphocyte activation is_a: GO:1902107 ! positive regulation of leukocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030098 ! lymphocyte differentiation -relationship: positively_regulates GO:0030098 ! lymphocyte differentiation +intersection_of: RO:0002213 GO:0030098 ! positively regulates lymphocyte differentiation +relationship: RO:0002213 GO:0030098 ! positively regulates lymphocyte differentiation [Term] id: GO:0045631 @@ -80977,8 +80553,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of mechanoreceptor differentiation." [GOC:go_curators] is_a: GO:0045664 ! regulation of neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042490 ! mechanoreceptor differentiation -relationship: regulates GO:0042490 ! mechanoreceptor differentiation +intersection_of: RO:0002211 GO:0042490 ! regulates (processual) mechanoreceptor differentiation +relationship: RO:0002211 GO:0042490 ! regulates (processual) mechanoreceptor differentiation [Term] id: GO:0045632 @@ -80992,8 +80568,8 @@ synonym: "inhibition of mechanoreceptor differentiation" NARROW [] is_a: GO:0045631 ! regulation of mechanoreceptor differentiation is_a: GO:0045665 ! negative regulation of neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042490 ! mechanoreceptor differentiation -relationship: negatively_regulates GO:0042490 ! mechanoreceptor differentiation +intersection_of: RO:0002212 GO:0042490 ! negatively regulates mechanoreceptor differentiation +relationship: RO:0002212 GO:0042490 ! negatively regulates mechanoreceptor differentiation [Term] id: GO:0045633 @@ -81008,8 +80584,8 @@ synonym: "upregulation of mechanoreceptor differentiation" EXACT [] is_a: GO:0045631 ! regulation of mechanoreceptor differentiation is_a: GO:0045666 ! positive regulation of neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042490 ! mechanoreceptor differentiation -relationship: positively_regulates GO:0042490 ! mechanoreceptor differentiation +intersection_of: RO:0002213 GO:0042490 ! positively regulates mechanoreceptor differentiation +relationship: RO:0002213 GO:0042490 ! positively regulates mechanoreceptor differentiation [Term] id: GO:0045634 @@ -81019,8 +80595,8 @@ def: "Any process that modulates the frequency, rate or extent of melanocyte dif synonym: "regulation of melanophore differentiation" EXACT [] is_a: GO:0050932 ! regulation of pigment cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030318 ! melanocyte differentiation -relationship: regulates GO:0030318 ! melanocyte differentiation +intersection_of: RO:0002211 GO:0030318 ! regulates (processual) melanocyte differentiation +relationship: RO:0002211 GO:0030318 ! regulates (processual) melanocyte differentiation [Term] id: GO:0045635 @@ -81035,8 +80611,8 @@ synonym: "negative regulation of melanophore differentiation" EXACT [] is_a: GO:0045634 ! regulation of melanocyte differentiation is_a: GO:0050941 ! negative regulation of pigment cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030318 ! melanocyte differentiation -relationship: negatively_regulates GO:0030318 ! melanocyte differentiation +intersection_of: RO:0002212 GO:0030318 ! negatively regulates melanocyte differentiation +relationship: RO:0002212 GO:0030318 ! negatively regulates melanocyte differentiation [Term] id: GO:0045636 @@ -81052,8 +80628,8 @@ synonym: "upregulation of melanocyte differentiation" EXACT [] is_a: GO:0045634 ! regulation of melanocyte differentiation is_a: GO:0050942 ! positive regulation of pigment cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030318 ! melanocyte differentiation -relationship: positively_regulates GO:0030318 ! melanocyte differentiation +intersection_of: RO:0002213 GO:0030318 ! positively regulates melanocyte differentiation +relationship: RO:0002213 GO:0030318 ! positively regulates melanocyte differentiation [Term] id: GO:0045637 @@ -81062,9 +80638,9 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of myeloid cell differentiation." [GOC:go_curators] is_a: GO:1903706 ! regulation of hemopoiesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030099 ! myeloid cell differentiation -relationship: regulates GO:0030097 ! hemopoiesis -relationship: regulates GO:0030099 ! myeloid cell differentiation +intersection_of: RO:0002211 GO:0030099 ! regulates (processual) myeloid cell differentiation +relationship: RO:0002211 GO:0030097 ! regulates (processual) hemopoiesis +relationship: RO:0002211 GO:0030099 ! regulates (processual) myeloid cell differentiation [Term] id: GO:0045638 @@ -81078,8 +80654,8 @@ synonym: "inhibition of myeloid cell differentiation" NARROW [] is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:0045637 ! regulation of myeloid cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030099 ! myeloid cell differentiation -relationship: negatively_regulates GO:0030099 ! myeloid cell differentiation +intersection_of: RO:0002212 GO:0030099 ! negatively regulates myeloid cell differentiation +relationship: RO:0002212 GO:0030099 ! negatively regulates myeloid cell differentiation [Term] id: GO:0045639 @@ -81094,8 +80670,8 @@ synonym: "upregulation of myeloid cell differentiation" EXACT [] is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:0045637 ! regulation of myeloid cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030099 ! myeloid cell differentiation -relationship: positively_regulates GO:0030099 ! myeloid cell differentiation +intersection_of: RO:0002213 GO:0030099 ! positively regulates myeloid cell differentiation +relationship: RO:0002213 GO:0030099 ! positively regulates myeloid cell differentiation [Term] id: GO:0045646 @@ -81106,8 +80682,8 @@ synonym: "regulation of RBC differentiation" EXACT [CL:0000232] synonym: "regulation of red blood cell differentiation" EXACT [CL:0000232] is_a: GO:0045637 ! regulation of myeloid cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030218 ! erythrocyte differentiation -relationship: regulates GO:0030218 ! erythrocyte differentiation +intersection_of: RO:0002211 GO:0030218 ! regulates (processual) erythrocyte differentiation +relationship: RO:0002211 GO:0030218 ! regulates (processual) erythrocyte differentiation [Term] id: GO:0045647 @@ -81123,8 +80699,8 @@ synonym: "negative regulation of red blood cell differentiation" EXACT [CL:00002 is_a: GO:0045638 ! negative regulation of myeloid cell differentiation is_a: GO:0045646 ! regulation of erythrocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030218 ! erythrocyte differentiation -relationship: negatively_regulates GO:0030218 ! erythrocyte differentiation +intersection_of: RO:0002212 GO:0030218 ! negatively regulates erythrocyte differentiation +relationship: RO:0002212 GO:0030218 ! negatively regulates erythrocyte differentiation [Term] id: GO:0045648 @@ -81141,8 +80717,8 @@ synonym: "upregulation of erythrocyte differentiation" EXACT [] is_a: GO:0045639 ! positive regulation of myeloid cell differentiation is_a: GO:0045646 ! regulation of erythrocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030218 ! erythrocyte differentiation -relationship: positively_regulates GO:0030218 ! erythrocyte differentiation +intersection_of: RO:0002213 GO:0030218 ! positively regulates erythrocyte differentiation +relationship: RO:0002213 GO:0030218 ! positively regulates erythrocyte differentiation [Term] id: GO:0045649 @@ -81151,8 +80727,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of macrophage differentiation." [GOC:go_curators] is_a: GO:0002761 ! regulation of myeloid leukocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030225 ! macrophage differentiation -relationship: regulates GO:0030225 ! macrophage differentiation +intersection_of: RO:0002211 GO:0030225 ! regulates (processual) macrophage differentiation +relationship: RO:0002211 GO:0030225 ! regulates (processual) macrophage differentiation [Term] id: GO:0045650 @@ -81166,8 +80742,8 @@ synonym: "inhibition of macrophage differentiation" NARROW [] is_a: GO:0002762 ! negative regulation of myeloid leukocyte differentiation is_a: GO:0045649 ! regulation of macrophage differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030225 ! macrophage differentiation -relationship: negatively_regulates GO:0030225 ! macrophage differentiation +intersection_of: RO:0002212 GO:0030225 ! negatively regulates macrophage differentiation +relationship: RO:0002212 GO:0030225 ! negatively regulates macrophage differentiation [Term] id: GO:0045651 @@ -81182,8 +80758,8 @@ synonym: "upregulation of macrophage differentiation" EXACT [] is_a: GO:0002763 ! positive regulation of myeloid leukocyte differentiation is_a: GO:0045649 ! regulation of macrophage differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030225 ! macrophage differentiation -relationship: positively_regulates GO:0030225 ! macrophage differentiation +intersection_of: RO:0002213 GO:0030225 ! positively regulates macrophage differentiation +relationship: RO:0002213 GO:0030225 ! positively regulates macrophage differentiation [Term] id: GO:0045652 @@ -81192,8 +80768,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of megakaryocyte differentiation." [GOC:go_curators] is_a: GO:0045637 ! regulation of myeloid cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030219 ! megakaryocyte differentiation -relationship: regulates GO:0030219 ! megakaryocyte differentiation +intersection_of: RO:0002211 GO:0030219 ! regulates (processual) megakaryocyte differentiation +relationship: RO:0002211 GO:0030219 ! regulates (processual) megakaryocyte differentiation [Term] id: GO:0045653 @@ -81207,8 +80783,8 @@ synonym: "inhibition of megakaryocyte differentiation" NARROW [] is_a: GO:0045638 ! negative regulation of myeloid cell differentiation is_a: GO:0045652 ! regulation of megakaryocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030219 ! megakaryocyte differentiation -relationship: negatively_regulates GO:0030219 ! megakaryocyte differentiation +intersection_of: RO:0002212 GO:0030219 ! negatively regulates megakaryocyte differentiation +relationship: RO:0002212 GO:0030219 ! negatively regulates megakaryocyte differentiation [Term] id: GO:0045654 @@ -81223,8 +80799,8 @@ synonym: "upregulation of megakaryocyte differentiation" EXACT [] is_a: GO:0045639 ! positive regulation of myeloid cell differentiation is_a: GO:0045652 ! regulation of megakaryocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030219 ! megakaryocyte differentiation -relationship: positively_regulates GO:0030219 ! megakaryocyte differentiation +intersection_of: RO:0002213 GO:0030219 ! positively regulates megakaryocyte differentiation +relationship: RO:0002213 GO:0030219 ! positively regulates megakaryocyte differentiation [Term] id: GO:0045655 @@ -81233,8 +80809,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of monocyte differentiation." [GOC:go_curators] is_a: GO:0002761 ! regulation of myeloid leukocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030224 ! monocyte differentiation -relationship: regulates GO:0030224 ! monocyte differentiation +intersection_of: RO:0002211 GO:0030224 ! regulates (processual) monocyte differentiation +relationship: RO:0002211 GO:0030224 ! regulates (processual) monocyte differentiation [Term] id: GO:0045656 @@ -81248,8 +80824,8 @@ synonym: "inhibition of monocyte differentiation" NARROW [] is_a: GO:0002762 ! negative regulation of myeloid leukocyte differentiation is_a: GO:0045655 ! regulation of monocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030224 ! monocyte differentiation -relationship: negatively_regulates GO:0030224 ! monocyte differentiation +intersection_of: RO:0002212 GO:0030224 ! negatively regulates monocyte differentiation +relationship: RO:0002212 GO:0030224 ! negatively regulates monocyte differentiation [Term] id: GO:0045657 @@ -81264,8 +80840,8 @@ synonym: "upregulation of monocyte differentiation" EXACT [] is_a: GO:0002763 ! positive regulation of myeloid leukocyte differentiation is_a: GO:0045655 ! regulation of monocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030224 ! monocyte differentiation -relationship: positively_regulates GO:0030224 ! monocyte differentiation +intersection_of: RO:0002213 GO:0030224 ! positively regulates monocyte differentiation +relationship: RO:0002213 GO:0030224 ! positively regulates monocyte differentiation [Term] id: GO:0045658 @@ -81274,8 +80850,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of neutrophil differentiation." [GOC:go_curators] is_a: GO:0030852 ! regulation of granulocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030223 ! neutrophil differentiation -relationship: regulates GO:0030223 ! neutrophil differentiation +intersection_of: RO:0002211 GO:0030223 ! regulates (processual) neutrophil differentiation +relationship: RO:0002211 GO:0030223 ! regulates (processual) neutrophil differentiation [Term] id: GO:0045659 @@ -81289,8 +80865,8 @@ synonym: "inhibition of neutrophil differentiation" NARROW [] is_a: GO:0030853 ! negative regulation of granulocyte differentiation is_a: GO:0045658 ! regulation of neutrophil differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030223 ! neutrophil differentiation -relationship: negatively_regulates GO:0030223 ! neutrophil differentiation +intersection_of: RO:0002212 GO:0030223 ! negatively regulates neutrophil differentiation +relationship: RO:0002212 GO:0030223 ! negatively regulates neutrophil differentiation [Term] id: GO:0045660 @@ -81305,8 +80881,8 @@ synonym: "upregulation of neutrophil differentiation" EXACT [] is_a: GO:0030854 ! positive regulation of granulocyte differentiation is_a: GO:0045658 ! regulation of neutrophil differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030223 ! neutrophil differentiation -relationship: positively_regulates GO:0030223 ! neutrophil differentiation +intersection_of: RO:0002213 GO:0030223 ! positively regulates neutrophil differentiation +relationship: RO:0002213 GO:0030223 ! positively regulates neutrophil differentiation [Term] id: GO:0045661 @@ -81315,8 +80891,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of myoblast differentiation. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers." [CL:0000056, GOC:go_curators, GOC:mtg_muscle] is_a: GO:0045595 ! regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0045445 ! myoblast differentiation -relationship: regulates GO:0045445 ! myoblast differentiation +intersection_of: RO:0002211 GO:0045445 ! regulates (processual) myoblast differentiation +relationship: RO:0002211 GO:0045445 ! regulates (processual) myoblast differentiation [Term] id: GO:0045662 @@ -81330,8 +80906,8 @@ synonym: "inhibition of myoblast differentiation" NARROW [] is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:0045661 ! regulation of myoblast differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0045445 ! myoblast differentiation -relationship: negatively_regulates GO:0045445 ! myoblast differentiation +intersection_of: RO:0002212 GO:0045445 ! negatively regulates myoblast differentiation +relationship: RO:0002212 GO:0045445 ! negatively regulates myoblast differentiation [Term] id: GO:0045663 @@ -81346,8 +80922,8 @@ synonym: "upregulation of myoblast differentiation" EXACT [] is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:0045661 ! regulation of myoblast differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0045445 ! myoblast differentiation -relationship: positively_regulates GO:0045445 ! myoblast differentiation +intersection_of: RO:0002213 GO:0045445 ! positively regulates myoblast differentiation +relationship: RO:0002213 GO:0045445 ! positively regulates myoblast differentiation [Term] id: GO:0045664 @@ -81356,10 +80932,10 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of neuron differentiation." [GOC:go_curators] is_a: GO:0045595 ! regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030182 ! neuron differentiation +intersection_of: RO:0002211 GO:0030182 ! regulates (processual) neuron differentiation relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa -relationship: regulates GO:0030182 ! neuron differentiation +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0002211 GO:0030182 ! regulates (processual) neuron differentiation [Term] id: GO:0045665 @@ -81373,8 +80949,8 @@ synonym: "inhibition of neuron differentiation" NARROW [] is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:0045664 ! regulation of neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030182 ! neuron differentiation -relationship: negatively_regulates GO:0030182 ! neuron differentiation +intersection_of: RO:0002212 GO:0030182 ! negatively regulates neuron differentiation +relationship: RO:0002212 GO:0030182 ! negatively regulates neuron differentiation [Term] id: GO:0045666 @@ -81389,8 +80965,8 @@ synonym: "upregulation of neuron differentiation" EXACT [] is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:0045664 ! regulation of neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030182 ! neuron differentiation -relationship: positively_regulates GO:0030182 ! neuron differentiation +intersection_of: RO:0002213 GO:0030182 ! positively regulates neuron differentiation +relationship: RO:0002213 GO:0030182 ! positively regulates neuron differentiation [Term] id: GO:0045667 @@ -81399,8 +80975,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of osteoblast differentiation." [GOC:go_curators] is_a: GO:0045595 ! regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001649 ! osteoblast differentiation -relationship: regulates GO:0001649 ! osteoblast differentiation +intersection_of: RO:0002211 GO:0001649 ! regulates (processual) osteoblast differentiation +relationship: RO:0002211 GO:0001649 ! regulates (processual) osteoblast differentiation [Term] id: GO:0045668 @@ -81414,8 +80990,8 @@ synonym: "inhibition of osteoblast differentiation" NARROW [] is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:0045667 ! regulation of osteoblast differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001649 ! osteoblast differentiation -relationship: negatively_regulates GO:0001649 ! osteoblast differentiation +intersection_of: RO:0002212 GO:0001649 ! negatively regulates osteoblast differentiation +relationship: RO:0002212 GO:0001649 ! negatively regulates osteoblast differentiation [Term] id: GO:0045669 @@ -81430,8 +81006,8 @@ synonym: "upregulation of osteoblast differentiation" EXACT [] is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:0045667 ! regulation of osteoblast differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001649 ! osteoblast differentiation -relationship: positively_regulates GO:0001649 ! osteoblast differentiation +intersection_of: RO:0002213 GO:0001649 ! positively regulates osteoblast differentiation +relationship: RO:0002213 GO:0001649 ! positively regulates osteoblast differentiation [Term] id: GO:0045670 @@ -81440,8 +81016,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of osteoclast differentiation." [GOC:go_curators] is_a: GO:0002761 ! regulation of myeloid leukocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030316 ! osteoclast differentiation -relationship: regulates GO:0030316 ! osteoclast differentiation +intersection_of: RO:0002211 GO:0030316 ! regulates (processual) osteoclast differentiation +relationship: RO:0002211 GO:0030316 ! regulates (processual) osteoclast differentiation [Term] id: GO:0045671 @@ -81455,8 +81031,8 @@ synonym: "inhibition of osteoclast differentiation" NARROW [] is_a: GO:0002762 ! negative regulation of myeloid leukocyte differentiation is_a: GO:0045670 ! regulation of osteoclast differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030316 ! osteoclast differentiation -relationship: negatively_regulates GO:0030316 ! osteoclast differentiation +intersection_of: RO:0002212 GO:0030316 ! negatively regulates osteoclast differentiation +relationship: RO:0002212 GO:0030316 ! negatively regulates osteoclast differentiation [Term] id: GO:0045672 @@ -81471,8 +81047,8 @@ synonym: "upregulation of osteoclast differentiation" EXACT [] is_a: GO:0002763 ! positive regulation of myeloid leukocyte differentiation is_a: GO:0045670 ! regulation of osteoclast differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030316 ! osteoclast differentiation -relationship: positively_regulates GO:0030316 ! osteoclast differentiation +intersection_of: RO:0002213 GO:0030316 ! positively regulates osteoclast differentiation +relationship: RO:0002213 GO:0030316 ! positively regulates osteoclast differentiation [Term] id: GO:0045682 @@ -81483,8 +81059,8 @@ synonym: "regulation of epidermal development" EXACT [] synonym: "regulation of hypodermis development" RELATED [GOC:kmv, GOC:rk] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008544 ! epidermis development -relationship: regulates GO:0008544 ! epidermis development +intersection_of: RO:0002211 GO:0008544 ! regulates (processual) epidermis development +relationship: RO:0002211 GO:0008544 ! regulates (processual) epidermis development [Term] id: GO:0045683 @@ -81500,8 +81076,8 @@ synonym: "negative regulation of hypodermis development" RELATED [GOC:kmv, GOC:r is_a: GO:0045682 ! regulation of epidermis development is_a: GO:0051093 ! negative regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008544 ! epidermis development -relationship: negatively_regulates GO:0008544 ! epidermis development +intersection_of: RO:0002212 GO:0008544 ! negatively regulates epidermis development +relationship: RO:0002212 GO:0008544 ! negatively regulates epidermis development [Term] id: GO:0045684 @@ -81518,8 +81094,8 @@ synonym: "upregulation of epidermis development" EXACT [] is_a: GO:0045682 ! regulation of epidermis development is_a: GO:0051094 ! positive regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008544 ! epidermis development -relationship: positively_regulates GO:0008544 ! epidermis development +intersection_of: RO:0002213 GO:0008544 ! positively regulates epidermis development +relationship: RO:0002213 GO:0008544 ! positively regulates epidermis development [Term] id: GO:0045685 @@ -81530,8 +81106,8 @@ synonym: "regulation of glia cell differentiation" EXACT [] synonym: "regulation of neuroglia differentiation" EXACT [] is_a: GO:0045595 ! regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0010001 ! glial cell differentiation -relationship: regulates GO:0010001 ! glial cell differentiation +intersection_of: RO:0002211 GO:0010001 ! regulates (processual) glial cell differentiation +relationship: RO:0002211 GO:0010001 ! regulates (processual) glial cell differentiation [Term] id: GO:0045686 @@ -81547,8 +81123,8 @@ synonym: "negative regulation of neuroglia differentiation" EXACT [] is_a: GO:0014014 ! negative regulation of gliogenesis is_a: GO:0045685 ! regulation of glial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0010001 ! glial cell differentiation -relationship: negatively_regulates GO:0010001 ! glial cell differentiation +intersection_of: RO:0002212 GO:0010001 ! negatively regulates glial cell differentiation +relationship: RO:0002212 GO:0010001 ! negatively regulates glial cell differentiation [Term] id: GO:0045687 @@ -81565,8 +81141,8 @@ synonym: "upregulation of glial cell differentiation" EXACT [] is_a: GO:0014015 ! positive regulation of gliogenesis is_a: GO:0045685 ! regulation of glial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0010001 ! glial cell differentiation -relationship: positively_regulates GO:0010001 ! glial cell differentiation +intersection_of: RO:0002213 GO:0010001 ! positively regulates glial cell differentiation +relationship: RO:0002213 GO:0010001 ! positively regulates glial cell differentiation [Term] id: GO:0045700 @@ -81576,9 +81152,9 @@ def: "Any process that modulates the frequency, rate or extent of spermatid nucl is_a: GO:0051239 ! regulation of multicellular organismal process is_a: GO:1903353 ! regulation of nucleus organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007289 ! spermatid nucleus differentiation -relationship: regulates GO:0007289 ! spermatid nucleus differentiation -relationship: regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002211 GO:0007289 ! regulates (processual) spermatid nucleus differentiation +relationship: RO:0002211 GO:0007289 ! regulates (processual) spermatid nucleus differentiation +relationship: RO:0002211 GO:0032501 ! regulates (processual) multicellular organismal process [Term] id: GO:0045701 @@ -81595,9 +81171,9 @@ is_a: GO:0045700 ! regulation of spermatid nuclear differentiation is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:2000242 ! negative regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007289 ! spermatid nucleus differentiation -relationship: negatively_regulates GO:0007289 ! spermatid nucleus differentiation -relationship: negatively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002212 GO:0007289 ! negatively regulates spermatid nucleus differentiation +relationship: RO:0002212 GO:0007289 ! negatively regulates spermatid nucleus differentiation +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process [Term] id: GO:0045702 @@ -81614,8 +81190,8 @@ is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:0045700 ! regulation of spermatid nuclear differentiation is_a: GO:2000243 ! positive regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007289 ! spermatid nucleus differentiation -relationship: positively_regulates GO:0007289 ! spermatid nucleus differentiation +intersection_of: RO:0002213 GO:0007289 ! positively regulates spermatid nucleus differentiation +relationship: RO:0002213 GO:0007289 ! positively regulates spermatid nucleus differentiation [Term] id: GO:0045717 @@ -81630,13 +81206,12 @@ synonym: "negative regulation of fatty acid anabolism" EXACT [] synonym: "negative regulation of fatty acid biosynthesis" EXACT [] synonym: "negative regulation of fatty acid formation" EXACT [] synonym: "negative regulation of fatty acid synthesis" EXACT [] -is_a: GO:0031327 ! negative regulation of cellular biosynthetic process is_a: GO:0042304 ! regulation of fatty acid biosynthetic process is_a: GO:0045922 ! negative regulation of fatty acid metabolic process is_a: GO:0051055 ! negative regulation of lipid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006633 ! fatty acid biosynthetic process -relationship: negatively_regulates GO:0006633 ! fatty acid biosynthetic process +intersection_of: RO:0002212 GO:0006633 ! negatively regulates fatty acid biosynthetic process +relationship: RO:0002212 GO:0006633 ! negatively regulates fatty acid biosynthetic process [Term] id: GO:0045719 @@ -81655,8 +81230,8 @@ is_a: GO:0005979 ! regulation of glycogen biosynthetic process is_a: GO:0010558 ! negative regulation of macromolecule biosynthetic process is_a: GO:0070874 ! negative regulation of glycogen metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0005978 ! glycogen biosynthetic process -relationship: negatively_regulates GO:0005978 ! glycogen biosynthetic process +intersection_of: RO:0002212 GO:0005978 ! negatively regulates glycogen biosynthetic process +relationship: RO:0002212 GO:0005978 ! negatively regulates glycogen biosynthetic process [Term] id: GO:0045721 @@ -81668,12 +81243,12 @@ synonym: "down-regulation of gluconeogenesis" EXACT [] synonym: "downregulation of gluconeogenesis" EXACT [] synonym: "inhibition of gluconeogenesis" NARROW [] is_a: GO:0006111 ! regulation of gluconeogenesis -is_a: GO:0031327 ! negative regulation of cellular biosynthetic process +is_a: GO:0009890 ! negative regulation of biosynthetic process is_a: GO:0045912 ! negative regulation of carbohydrate metabolic process is_a: GO:0062014 ! negative regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006094 ! gluconeogenesis -relationship: negatively_regulates GO:0006094 ! gluconeogenesis +intersection_of: RO:0002212 GO:0006094 ! negatively regulates gluconeogenesis +relationship: RO:0002212 GO:0006094 ! negatively regulates gluconeogenesis [Term] id: GO:0045722 @@ -81686,11 +81261,11 @@ synonym: "up regulation of gluconeogenesis" EXACT [] synonym: "up-regulation of gluconeogenesis" EXACT [] synonym: "upregulation of gluconeogenesis" EXACT [] is_a: GO:0006111 ! regulation of gluconeogenesis +is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:0010907 ! positive regulation of glucose metabolic process -is_a: GO:0031328 ! positive regulation of cellular biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006094 ! gluconeogenesis -relationship: positively_regulates GO:0006094 ! gluconeogenesis +intersection_of: RO:0002213 GO:0006094 ! positively regulates gluconeogenesis +relationship: RO:0002213 GO:0006094 ! positively regulates gluconeogenesis [Term] id: GO:0045723 @@ -81706,13 +81281,12 @@ synonym: "stimulation of fatty acid biosynthetic process" NARROW [] synonym: "up regulation of fatty acid biosynthetic process" EXACT [] synonym: "up-regulation of fatty acid biosynthetic process" EXACT [] synonym: "upregulation of fatty acid biosynthetic process" EXACT [] -is_a: GO:0031328 ! positive regulation of cellular biosynthetic process is_a: GO:0042304 ! regulation of fatty acid biosynthetic process is_a: GO:0045923 ! positive regulation of fatty acid metabolic process is_a: GO:0046889 ! positive regulation of lipid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006633 ! fatty acid biosynthetic process -relationship: positively_regulates GO:0006633 ! fatty acid biosynthetic process +intersection_of: RO:0002213 GO:0006633 ! positively regulates fatty acid biosynthetic process +relationship: RO:0002213 GO:0006633 ! positively regulates fatty acid biosynthetic process [Term] id: GO:0045724 @@ -81730,8 +81304,8 @@ is_a: GO:0120034 ! positive regulation of plasma membrane bounded cell projectio is_a: GO:1902017 ! regulation of cilium assembly is_a: GO:1902117 ! positive regulation of organelle assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060271 ! cilium assembly -relationship: positively_regulates GO:0060271 ! cilium assembly +intersection_of: RO:0002213 GO:0060271 ! positively regulates cilium assembly +relationship: RO:0002213 GO:0060271 ! positively regulates cilium assembly [Term] id: GO:0045725 @@ -81751,8 +81325,8 @@ is_a: GO:0005979 ! regulation of glycogen biosynthetic process is_a: GO:0010557 ! positive regulation of macromolecule biosynthetic process is_a: GO:0070875 ! positive regulation of glycogen metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0005978 ! glycogen biosynthetic process -relationship: positively_regulates GO:0005978 ! glycogen biosynthetic process +intersection_of: RO:0002213 GO:0005978 ! positively regulates glycogen biosynthetic process +relationship: RO:0002213 GO:0005978 ! positively regulates glycogen biosynthetic process [Term] id: GO:0045727 @@ -81774,9 +81348,9 @@ is_a: GO:0006417 ! regulation of translation is_a: GO:0010628 ! positive regulation of gene expression is_a: GO:0051247 ! positive regulation of protein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006412 ! translation -relationship: positively_regulates GO:0006412 ! translation -relationship: positively_regulates GO:0010467 ! gene expression +intersection_of: RO:0002213 GO:0006412 ! positively regulates translation +relationship: RO:0002213 GO:0006412 ! positively regulates translation +relationship: RO:0002213 GO:0010467 ! positively regulates gene expression [Term] id: GO:0045732 @@ -81822,8 +81396,8 @@ is_a: GO:0009896 ! positive regulation of catabolic process is_a: GO:0042176 ! regulation of protein catabolic process is_a: GO:0051247 ! positive regulation of protein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030163 ! protein catabolic process -relationship: positively_regulates GO:0030163 ! protein catabolic process +intersection_of: RO:0002213 GO:0030163 ! positively regulates protein catabolic process +relationship: RO:0002213 GO:0030163 ! positively regulates protein catabolic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23112" xsd:anyURI [Term] @@ -81839,8 +81413,8 @@ synonym: "homoacetate catabolic process" RELATED [] is_a: GO:0006083 ! acetate metabolic process is_a: GO:0072329 ! monocarboxylic acid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:30089 ! acetate -relationship: has_primary_input CHEBI:30089 ! acetate +intersection_of: RO:0004009 CHEBI:30089 ! has primary input acetate +relationship: RO:0004009 CHEBI:30089 ! has primary input acetate [Term] id: GO:0045734 @@ -81850,11 +81424,12 @@ def: "Any process that modulates the frequency, rate or extent of the chemical r synonym: "regulation of acetate breakdown" EXACT [] synonym: "regulation of acetate catabolism" EXACT [] synonym: "regulation of acetate degradation" EXACT [] -is_a: GO:0010565 ! regulation of cellular ketone metabolic process -is_a: GO:0031329 ! regulation of cellular catabolic process +is_a: GO:0009894 ! regulation of catabolic process +is_a: GO:0010565 ! regulation of ketone metabolic process +is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0045733 ! acetate catabolic process -relationship: regulates GO:0045733 ! acetate catabolic process +intersection_of: RO:0002211 GO:0045733 ! regulates (processual) acetate catabolic process +relationship: RO:0002211 GO:0045733 ! regulates (processual) acetate catabolic process [Term] id: GO:0045744 @@ -81875,8 +81450,8 @@ synonym: "negative regulation of GPCR protein signalling pathway" EXACT [] is_a: GO:0008277 ! regulation of G protein-coupled receptor signaling pathway is_a: GO:0009968 ! negative regulation of signal transduction intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007186 ! G protein-coupled receptor signaling pathway -relationship: negatively_regulates GO:0007186 ! G protein-coupled receptor signaling pathway +intersection_of: RO:0002212 GO:0007186 ! negatively regulates G protein-coupled receptor signaling pathway +relationship: RO:0002212 GO:0007186 ! negatively regulates G protein-coupled receptor signaling pathway [Term] id: GO:0045745 @@ -81899,8 +81474,8 @@ synonym: "upregulation of G-protein coupled receptor protein signaling pathway" is_a: GO:0008277 ! regulation of G protein-coupled receptor signaling pathway is_a: GO:0009967 ! positive regulation of signal transduction intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007186 ! G protein-coupled receptor signaling pathway -relationship: positively_regulates GO:0007186 ! G protein-coupled receptor signaling pathway +intersection_of: RO:0002213 GO:0007186 ! positively regulates G protein-coupled receptor signaling pathway +relationship: RO:0002213 GO:0007186 ! positively regulates G protein-coupled receptor signaling pathway [Term] id: GO:0045753 @@ -81914,12 +81489,12 @@ synonym: "inhibition of acetate catabolic process" NARROW [] synonym: "negative regulation of acetate breakdown" EXACT [] synonym: "negative regulation of acetate catabolism" EXACT [] synonym: "negative regulation of acetate degradation" EXACT [] -is_a: GO:0031330 ! negative regulation of cellular catabolic process +is_a: GO:0009895 ! negative regulation of catabolic process is_a: GO:0045734 ! regulation of acetate catabolic process is_a: GO:0062014 ! negative regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0045733 ! acetate catabolic process -relationship: negatively_regulates GO:0045733 ! acetate catabolic process +intersection_of: RO:0002212 GO:0045733 ! negatively regulates acetate catabolic process +relationship: RO:0002212 GO:0045733 ! negatively regulates acetate catabolic process [Term] id: GO:0045754 @@ -81934,12 +81509,12 @@ synonym: "stimulation of acetate catabolic process" NARROW [] synonym: "up regulation of acetate catabolic process" EXACT [] synonym: "up-regulation of acetate catabolic process" EXACT [] synonym: "upregulation of acetate catabolic process" EXACT [] -is_a: GO:0031331 ! positive regulation of cellular catabolic process +is_a: GO:0009896 ! positive regulation of catabolic process is_a: GO:0045734 ! regulation of acetate catabolic process is_a: GO:0062013 ! positive regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0045733 ! acetate catabolic process -relationship: positively_regulates GO:0045733 ! acetate catabolic process +intersection_of: RO:0002213 GO:0045733 ! positively regulates acetate catabolic process +relationship: RO:0002213 GO:0045733 ! positively regulates acetate catabolic process [Term] id: GO:0045759 @@ -81953,8 +81528,8 @@ synonym: "inhibition of action potential" NARROW [] is_a: GO:0048519 ! negative regulation of biological process is_a: GO:0098900 ! regulation of action potential intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001508 ! action potential -relationship: negatively_regulates GO:0001508 ! action potential +intersection_of: RO:0002212 GO:0001508 ! negatively regulates action potential +relationship: RO:0002212 GO:0001508 ! negatively regulates action potential [Term] id: GO:0045760 @@ -81969,12 +81544,12 @@ synonym: "upregulation of action potential" EXACT [] is_a: GO:0048518 ! positive regulation of biological process is_a: GO:0098900 ! regulation of action potential intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001508 ! action potential -relationship: positively_regulates GO:0001508 ! action potential +intersection_of: RO:0002213 GO:0001508 ! positively regulates action potential +relationship: RO:0002213 GO:0001508 ! positively regulates action potential [Term] id: GO:0045763 -name: negative regulation of cellular amino acid metabolic process +name: negative regulation of amino acid metabolic process namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving amino acid." [GOC:go_curators] synonym: "down regulation of amino acid metabolic process" EXACT [] @@ -81982,11 +81557,12 @@ synonym: "down-regulation of amino acid metabolic process" EXACT [] synonym: "downregulation of amino acid metabolic process" EXACT [] synonym: "inhibition of amino acid metabolic process" NARROW [] synonym: "negative regulation of amino acid metabolism" EXACT [] -is_a: GO:0006521 ! regulation of cellular amino acid metabolic process -is_a: GO:0033239 ! negative regulation of amine metabolic process +is_a: GO:0006521 ! regulation of amino acid metabolic process +is_a: GO:0009892 ! negative regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006520 ! amino acid metabolic process -relationship: negatively_regulates GO:0006520 ! amino acid metabolic process +intersection_of: RO:0002212 GO:0006520 ! negatively regulates amino acid metabolic process +relationship: RO:0002212 GO:0006520 ! negatively regulates amino acid metabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0045764 @@ -82000,11 +81576,11 @@ synonym: "stimulation of amino acid metabolic process" NARROW [] synonym: "up regulation of amino acid metabolic process" EXACT [] synonym: "up-regulation of amino acid metabolic process" EXACT [] synonym: "upregulation of amino acid metabolic process" EXACT [] -is_a: GO:0006521 ! regulation of cellular amino acid metabolic process -is_a: GO:0033240 ! positive regulation of amine metabolic process +is_a: GO:0006521 ! regulation of amino acid metabolic process +is_a: GO:0009893 ! positive regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006520 ! amino acid metabolic process -relationship: positively_regulates GO:0006520 ! amino acid metabolic process +intersection_of: RO:0002213 GO:0006520 ! positively regulates amino acid metabolic process +relationship: RO:0002213 GO:0006520 ! positively regulates amino acid metabolic process [Term] id: GO:0045765 @@ -82014,8 +81590,8 @@ def: "Any process that modulates the frequency, rate or extent of angiogenesis." is_a: GO:0022603 ! regulation of anatomical structure morphogenesis is_a: GO:1901342 ! regulation of vasculature development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001525 ! angiogenesis -relationship: regulates GO:0001525 ! angiogenesis +intersection_of: RO:0002211 GO:0001525 ! regulates (processual) angiogenesis +relationship: RO:0002211 GO:0001525 ! regulates (processual) angiogenesis [Term] id: GO:0045766 @@ -82030,8 +81606,8 @@ synonym: "upregulation of angiogenesis" EXACT [] is_a: GO:0045765 ! regulation of angiogenesis is_a: GO:1904018 ! positive regulation of vasculature development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001525 ! angiogenesis -relationship: positively_regulates GO:0001525 ! angiogenesis +intersection_of: RO:0002213 GO:0001525 ! positively regulates angiogenesis +relationship: RO:0002213 GO:0001525 ! positively regulates angiogenesis [Term] id: GO:0045769 @@ -82045,8 +81621,8 @@ synonym: "inhibition of asymmetric cell division" NARROW [] is_a: GO:0009786 ! regulation of asymmetric cell division is_a: GO:0051782 ! negative regulation of cell division intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008356 ! asymmetric cell division -relationship: negatively_regulates GO:0008356 ! asymmetric cell division +intersection_of: RO:0002212 GO:0008356 ! negatively regulates asymmetric cell division +relationship: RO:0002212 GO:0008356 ! negatively regulates asymmetric cell division [Term] id: GO:0045770 @@ -82061,8 +81637,8 @@ synonym: "upregulation of asymmetric cell division" EXACT [] is_a: GO:0009786 ! regulation of asymmetric cell division is_a: GO:0051781 ! positive regulation of cell division intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008356 ! asymmetric cell division -relationship: positively_regulates GO:0008356 ! asymmetric cell division +intersection_of: RO:0002213 GO:0008356 ! positively regulates asymmetric cell division +relationship: RO:0002213 GO:0008356 ! positively regulates asymmetric cell division [Term] id: GO:0045778 @@ -82079,8 +81655,8 @@ synonym: "upregulation of ossification" EXACT [] is_a: GO:0030278 ! regulation of ossification is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001503 ! ossification -relationship: positively_regulates GO:0001503 ! ossification +intersection_of: RO:0002213 GO:0001503 ! positively regulates ossification +relationship: RO:0002213 GO:0001503 ! positively regulates ossification [Term] id: GO:0045779 @@ -82094,9 +81670,9 @@ synonym: "inhibition of bone resorption" NARROW [] is_a: GO:0045124 ! regulation of bone resorption is_a: GO:0046851 ! negative regulation of bone remodeling intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0045453 ! bone resorption -relationship: negatively_regulates GO:0045453 ! bone resorption -relationship: negatively_regulates GO:0046849 ! bone remodeling +intersection_of: RO:0002212 GO:0045453 ! negatively regulates bone resorption +relationship: RO:0002212 GO:0045453 ! negatively regulates bone resorption +relationship: RO:0002212 GO:0046849 ! negatively regulates bone remodeling [Term] id: GO:0045780 @@ -82111,8 +81687,8 @@ synonym: "upregulation of bone resorption" EXACT [] is_a: GO:0045124 ! regulation of bone resorption is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0045453 ! bone resorption -relationship: positively_regulates GO:0045453 ! bone resorption +intersection_of: RO:0002213 GO:0045453 ! positively regulates bone resorption +relationship: RO:0002213 GO:0045453 ! positively regulates bone resorption [Term] id: GO:0045785 @@ -82127,8 +81703,8 @@ synonym: "upregulation of cell adhesion" EXACT [] is_a: GO:0030155 ! regulation of cell adhesion is_a: GO:0048522 ! positive regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007155 ! cell adhesion -relationship: positively_regulates GO:0007155 ! cell adhesion +intersection_of: RO:0002213 GO:0007155 ! positively regulates cell adhesion +relationship: RO:0002213 GO:0007155 ! positively regulates cell adhesion [Term] id: GO:0045786 @@ -82144,8 +81720,8 @@ synonym: "negative regulation of progression through cell cycle" EXACT [] is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:0051726 ! regulation of cell cycle intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007049 ! cell cycle -relationship: negatively_regulates GO:0007049 ! cell cycle +intersection_of: RO:0002212 GO:0007049 ! negatively regulates cell cycle +relationship: RO:0002212 GO:0007049 ! negatively regulates cell cycle [Term] id: GO:0045787 @@ -82162,8 +81738,8 @@ synonym: "upregulation of progression through cell cycle" EXACT [] is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0051726 ! regulation of cell cycle intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007049 ! cell cycle -relationship: positively_regulates GO:0007049 ! cell cycle +intersection_of: RO:0002213 GO:0007049 ! positively regulates cell cycle +relationship: RO:0002213 GO:0007049 ! positively regulates cell cycle [Term] id: GO:0045804 @@ -82178,9 +81754,9 @@ is_a: GO:0007563 ! regulation of eclosion is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007562 ! eclosion -relationship: negatively_regulates GO:0007562 ! eclosion -relationship: negatively_regulates GO:0032502 ! developmental process +intersection_of: RO:0002212 GO:0007562 ! negatively regulates eclosion +relationship: RO:0002212 GO:0007562 ! negatively regulates eclosion +relationship: RO:0002212 GO:0032502 ! negatively regulates developmental process [Term] id: GO:0045805 @@ -82195,8 +81771,8 @@ synonym: "upregulation of eclosion" EXACT [] is_a: GO:0007563 ! regulation of eclosion is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007562 ! eclosion -relationship: positively_regulates GO:0007562 ! eclosion +intersection_of: RO:0002213 GO:0007562 ! positively regulates eclosion +relationship: RO:0002213 GO:0007562 ! positively regulates eclosion [Term] id: GO:0045806 @@ -82211,8 +81787,8 @@ is_a: GO:0030100 ! regulation of endocytosis is_a: GO:0051051 ! negative regulation of transport is_a: GO:0051129 ! negative regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006897 ! endocytosis -relationship: negatively_regulates GO:0006897 ! endocytosis +intersection_of: RO:0002212 GO:0006897 ! negatively regulates endocytosis +relationship: RO:0002212 GO:0006897 ! negatively regulates endocytosis [Term] id: GO:0045807 @@ -82228,8 +81804,8 @@ is_a: GO:0030100 ! regulation of endocytosis is_a: GO:0051050 ! positive regulation of transport is_a: GO:0051130 ! positive regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006897 ! endocytosis -relationship: positively_regulates GO:0006897 ! endocytosis +intersection_of: RO:0002213 GO:0006897 ! positively regulates endocytosis +relationship: RO:0002213 GO:0006897 ! positively regulates endocytosis [Term] id: GO:0045818 @@ -82245,11 +81821,12 @@ synonym: "negative regulation of glycogen catabolism" EXACT [] synonym: "negative regulation of glycogen degradation" EXACT [] synonym: "negative regulation of glycogenolysis" EXACT [GOC:sl] is_a: GO:0005981 ! regulation of glycogen catabolic process -is_a: GO:0031330 ! negative regulation of cellular catabolic process +is_a: GO:0009895 ! negative regulation of catabolic process is_a: GO:0070874 ! negative regulation of glycogen metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0005980 ! glycogen catabolic process -relationship: negatively_regulates GO:0005980 ! glycogen catabolic process +intersection_of: RO:0002212 GO:0005980 ! negatively regulates glycogen catabolic process +relationship: RO:0002212 GO:0005980 ! negatively regulates glycogen catabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29024" xsd:anyURI [Term] id: GO:0045819 @@ -82266,11 +81843,12 @@ synonym: "up regulation of glycogen catabolic process" EXACT [] synonym: "up-regulation of glycogen catabolic process" EXACT [] synonym: "upregulation of glycogen catabolic process" EXACT [] is_a: GO:0005981 ! regulation of glycogen catabolic process -is_a: GO:0031331 ! positive regulation of cellular catabolic process +is_a: GO:0009896 ! positive regulation of catabolic process is_a: GO:0070875 ! positive regulation of glycogen metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0005980 ! glycogen catabolic process -relationship: positively_regulates GO:0005980 ! glycogen catabolic process +intersection_of: RO:0002213 GO:0005980 ! positively regulates glycogen catabolic process +relationship: RO:0002213 GO:0005980 ! positively regulates glycogen catabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29024" xsd:anyURI [Term] id: GO:0045822 @@ -82285,8 +81863,8 @@ synonym: "negative regulation of cardiac contraction" RELATED [] is_a: GO:0008016 ! regulation of heart contraction is_a: GO:1903523 ! negative regulation of blood circulation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060047 ! heart contraction -relationship: negatively_regulates GO:0060047 ! heart contraction +intersection_of: RO:0002212 GO:0060047 ! negatively regulates heart contraction +relationship: RO:0002212 GO:0060047 ! negatively regulates heart contraction [Term] id: GO:0045823 @@ -82302,8 +81880,8 @@ synonym: "upregulation of heart contraction" EXACT [] is_a: GO:0008016 ! regulation of heart contraction is_a: GO:1903524 ! positive regulation of blood circulation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060047 ! heart contraction -relationship: positively_regulates GO:0060047 ! heart contraction +intersection_of: RO:0002213 GO:0060047 ! positively regulates heart contraction +relationship: RO:0002213 GO:0060047 ! positively regulates heart contraction [Term] id: GO:0045824 @@ -82320,8 +81898,8 @@ is_a: GO:0032102 ! negative regulation of response to external stimulus is_a: GO:0045088 ! regulation of innate immune response is_a: GO:0050777 ! negative regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0045087 ! innate immune response -relationship: negatively_regulates GO:0045087 ! innate immune response +intersection_of: RO:0002212 GO:0045087 ! negatively regulates innate immune response +relationship: RO:0002212 GO:0045087 ! negatively regulates innate immune response [Term] id: GO:0045827 @@ -82334,11 +81912,10 @@ synonym: "downregulation of isoprenoid metabolic process" EXACT [] synonym: "inhibition of isoprenoid metabolic process" NARROW [] synonym: "negative regulation of isoprenoid metabolism" EXACT [] is_a: GO:0019747 ! regulation of isoprenoid metabolic process -is_a: GO:0031324 ! negative regulation of cellular metabolic process is_a: GO:0045833 ! negative regulation of lipid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006720 ! isoprenoid metabolic process -relationship: negatively_regulates GO:0006720 ! isoprenoid metabolic process +intersection_of: RO:0002212 GO:0006720 ! negatively regulates isoprenoid metabolic process +relationship: RO:0002212 GO:0006720 ! negatively regulates isoprenoid metabolic process [Term] id: GO:0045828 @@ -82352,11 +81929,10 @@ synonym: "up regulation of isoprenoid metabolic process" EXACT [] synonym: "up-regulation of isoprenoid metabolic process" EXACT [] synonym: "upregulation of isoprenoid metabolic process" EXACT [] is_a: GO:0019747 ! regulation of isoprenoid metabolic process -is_a: GO:0031325 ! positive regulation of cellular metabolic process is_a: GO:0045834 ! positive regulation of lipid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006720 ! isoprenoid metabolic process -relationship: positively_regulates GO:0006720 ! isoprenoid metabolic process +intersection_of: RO:0002213 GO:0006720 ! positively regulates isoprenoid metabolic process +relationship: RO:0002213 GO:0006720 ! positively regulates isoprenoid metabolic process [Term] id: GO:0045829 @@ -82377,12 +81953,12 @@ is_a: GO:0045910 ! negative regulation of DNA recombination is_a: GO:0050869 ! negative regulation of B cell activation is_a: GO:0051093 ! negative regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0045190 ! isotype switching -relationship: negatively_regulates GO:0002377 ! immunoglobulin production -relationship: negatively_regulates GO:0016064 ! immunoglobulin mediated immune response -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0032502 ! developmental process -relationship: negatively_regulates GO:0045190 ! isotype switching +intersection_of: RO:0002212 GO:0045190 ! negatively regulates isotype switching +relationship: RO:0002212 GO:0002377 ! negatively regulates immunoglobulin production +relationship: RO:0002212 GO:0016064 ! negatively regulates immunoglobulin mediated immune response +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0032502 ! negatively regulates developmental process +relationship: RO:0002212 GO:0045190 ! negatively regulates isotype switching [Term] id: GO:0045830 @@ -82404,12 +81980,12 @@ is_a: GO:0045911 ! positive regulation of DNA recombination is_a: GO:0050871 ! positive regulation of B cell activation is_a: GO:0051094 ! positive regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0045190 ! isotype switching -relationship: positively_regulates GO:0002377 ! immunoglobulin production -relationship: positively_regulates GO:0016064 ! immunoglobulin mediated immune response -relationship: positively_regulates GO:0032501 ! multicellular organismal process -relationship: positively_regulates GO:0032502 ! developmental process -relationship: positively_regulates GO:0045190 ! isotype switching +intersection_of: RO:0002213 GO:0045190 ! positively regulates isotype switching +relationship: RO:0002213 GO:0002377 ! positively regulates immunoglobulin production +relationship: RO:0002213 GO:0016064 ! positively regulates immunoglobulin mediated immune response +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process +relationship: RO:0002213 GO:0032502 ! positively regulates developmental process +relationship: RO:0002213 GO:0045190 ! positively regulates isotype switching [Term] id: GO:0045833 @@ -82424,8 +82000,8 @@ synonym: "negative regulation of lipid metabolism" EXACT [] is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0019216 ! regulation of lipid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006629 ! lipid metabolic process -relationship: negatively_regulates GO:0006629 ! lipid metabolic process +intersection_of: RO:0002212 GO:0006629 ! negatively regulates lipid metabolic process +relationship: RO:0002212 GO:0006629 ! negatively regulates lipid metabolic process [Term] id: GO:0045834 @@ -82441,8 +82017,8 @@ synonym: "upregulation of lipid metabolic process" EXACT [] is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0019216 ! regulation of lipid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006629 ! lipid metabolic process -relationship: positively_regulates GO:0006629 ! lipid metabolic process +intersection_of: RO:0002213 GO:0006629 ! positively regulates lipid metabolic process +relationship: RO:0002213 GO:0006629 ! positively regulates lipid metabolic process [Term] id: GO:0045835 @@ -82459,8 +82035,8 @@ is_a: GO:0040020 ! regulation of meiotic nuclear division is_a: GO:0051447 ! negative regulation of meiotic cell cycle is_a: GO:0051784 ! negative regulation of nuclear division intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0140013 ! meiotic nuclear division -relationship: negatively_regulates GO:0140013 ! meiotic nuclear division +intersection_of: RO:0002212 GO:0140013 ! negatively regulates meiotic nuclear division +relationship: RO:0002212 GO:0140013 ! negatively regulates meiotic nuclear division [Term] id: GO:0045836 @@ -82478,9 +82054,9 @@ is_a: GO:0051446 ! positive regulation of meiotic cell cycle is_a: GO:0051785 ! positive regulation of nuclear division is_a: GO:0090068 ! positive regulation of cell cycle process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0140013 ! meiotic nuclear division -relationship: positively_regulates GO:0051321 ! meiotic cell cycle -relationship: positively_regulates GO:0140013 ! meiotic nuclear division +intersection_of: RO:0002213 GO:0140013 ! positively regulates meiotic nuclear division +relationship: RO:0002213 GO:0051321 ! positively regulates meiotic cell cycle +relationship: RO:0002213 GO:0140013 ! positively regulates meiotic nuclear division [Term] id: GO:0045839 @@ -82497,9 +82073,9 @@ is_a: GO:0010948 ! negative regulation of cell cycle process is_a: GO:0045930 ! negative regulation of mitotic cell cycle is_a: GO:0051784 ! negative regulation of nuclear division intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0140014 ! mitotic nuclear division -relationship: negatively_regulates GO:0000278 ! mitotic cell cycle -relationship: negatively_regulates GO:0140014 ! mitotic nuclear division +intersection_of: RO:0002212 GO:0140014 ! negatively regulates mitotic nuclear division +relationship: RO:0002212 GO:0000278 ! negatively regulates mitotic cell cycle +relationship: RO:0002212 GO:0140014 ! negatively regulates mitotic nuclear division [Term] id: GO:0045840 @@ -82517,8 +82093,8 @@ is_a: GO:0007088 ! regulation of mitotic nuclear division is_a: GO:0051785 ! positive regulation of nuclear division is_a: GO:0090068 ! positive regulation of cell cycle process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0140014 ! mitotic nuclear division -relationship: positively_regulates GO:0140014 ! mitotic nuclear division +intersection_of: RO:0002213 GO:0140014 ! positively regulates mitotic nuclear division +relationship: RO:0002213 GO:0140014 ! positively regulates mitotic nuclear division [Term] id: GO:0045843 @@ -82533,8 +82109,8 @@ is_a: GO:0016202 ! regulation of striated muscle tissue development is_a: GO:0048635 ! negative regulation of muscle organ development is_a: GO:1901862 ! negative regulation of muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014706 ! striated muscle tissue development -relationship: negatively_regulates GO:0014706 ! striated muscle tissue development +intersection_of: RO:0002212 GO:0014706 ! negatively regulates striated muscle tissue development +relationship: RO:0002212 GO:0014706 ! negatively regulates striated muscle tissue development [Term] id: GO:0045844 @@ -82550,28 +82126,28 @@ is_a: GO:0016202 ! regulation of striated muscle tissue development is_a: GO:0048636 ! positive regulation of muscle organ development is_a: GO:1901863 ! positive regulation of muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014706 ! striated muscle tissue development -relationship: positively_regulates GO:0014706 ! striated muscle tissue development +intersection_of: RO:0002213 GO:0014706 ! positively regulates striated muscle tissue development +relationship: RO:0002213 GO:0014706 ! positively regulates striated muscle tissue development [Term] id: GO:0045859 name: regulation of protein kinase activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of protein kinase activity." [GOC:go_curators] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate is_a: GO:0001932 ! regulation of protein phosphorylation is_a: GO:0043549 ! regulation of kinase activity intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0004672 ! protein kinase activity -relationship: regulates GO:0004672 ! protein kinase activity -relationship: regulates GO:0006468 ! protein phosphorylation +intersection_of: RO:0002211 GO:0004672 ! regulates (processual) protein kinase activity +relationship: RO:0002211 GO:0004672 ! regulates (processual) protein kinase activity +relationship: RO:0002211 GO:0006468 ! regulates (processual) protein phosphorylation [Term] id: GO:0045860 name: positive regulation of protein kinase activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of protein kinase activity." [GOC:go_curators] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "stimulation of protein kinase activity" NARROW [] synonym: "up regulation of protein kinase activity" EXACT [] synonym: "up-regulation of protein kinase activity" EXACT [] @@ -82580,8 +82156,8 @@ is_a: GO:0001934 ! positive regulation of protein phosphorylation is_a: GO:0033674 ! positive regulation of kinase activity is_a: GO:0045859 ! regulation of protein kinase activity intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0004672 ! protein kinase activity -relationship: positively_regulates GO:0004672 ! protein kinase activity +intersection_of: RO:0002213 GO:0004672 ! positively regulates protein kinase activity +relationship: RO:0002213 GO:0004672 ! positively regulates protein kinase activity [Term] id: GO:0045861 @@ -82596,8 +82172,8 @@ synonym: "negative regulation of peptidolysis" EXACT [] is_a: GO:0030162 ! regulation of proteolysis is_a: GO:0051248 ! negative regulation of protein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006508 ! proteolysis -relationship: negatively_regulates GO:0006508 ! proteolysis +intersection_of: RO:0002212 GO:0006508 ! negatively regulates proteolysis +relationship: RO:0002212 GO:0006508 ! negatively regulates proteolysis [Term] id: GO:0045862 @@ -82613,64 +82189,8 @@ synonym: "upregulation of proteolysis" EXACT [] is_a: GO:0030162 ! regulation of proteolysis is_a: GO:0051247 ! positive regulation of protein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006508 ! proteolysis -relationship: positively_regulates GO:0006508 ! proteolysis - -[Term] -id: GO:0045892 -name: negative regulation of DNA-templated transcription -namespace: biological_process -alt_id: GO:0016481 -alt_id: GO:0032582 -alt_id: GO:0061021 -def: "Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription." [GOC:go_curators, GOC:txnOH] -synonym: "down regulation of gene-specific transcription" RELATED [] -synonym: "down regulation of transcription, DNA-dependent" EXACT [] -synonym: "down-regulation of gene-specific transcription" RELATED [] -synonym: "down-regulation of transcription, DNA-dependent" EXACT [] -synonym: "downregulation of gene-specific transcription" RELATED [] -synonym: "downregulation of transcription, DNA-dependent" EXACT [] -synonym: "inhibition of gene-specific transcription" RELATED [] -synonym: "inhibition of transcription, DNA-dependent" NARROW [] -synonym: "negative regulation of cellular transcription, DNA-dependent" EXACT [] -synonym: "negative regulation of gene-specific transcription" RELATED [] -synonym: "negative regulation of transcription, DNA-dependent" EXACT [GOC:txnOH] -synonym: "negative regulation of transcription, DNA-templated" EXACT [] -synonym: "transcription repressor activity" RELATED [] -is_a: GO:0006355 ! regulation of DNA-templated transcription -is_a: GO:0010558 ! negative regulation of macromolecule biosynthetic process -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006351 ! DNA-templated transcription -relationship: negatively_regulates GO:0006351 ! DNA-templated transcription - -[Term] -id: GO:0045893 -name: positive regulation of DNA-templated transcription -namespace: biological_process -alt_id: GO:0043193 -alt_id: GO:0045941 -alt_id: GO:0061020 -def: "Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription." [GOC:go_curators, GOC:txnOH] -synonym: "activation of gene-specific transcription" RELATED [] -synonym: "activation of transcription, DNA-dependent" NARROW [] -synonym: "positive regulation of cellular transcription, DNA-dependent" EXACT [] -synonym: "positive regulation of gene-specific transcription" RELATED [] -synonym: "positive regulation of transcription, DNA-dependent" EXACT [GOC:txnOH] -synonym: "positive regulation of transcription, DNA-templated" EXACT [] -synonym: "stimulation of gene-specific transcription" NARROW [] -synonym: "stimulation of transcription, DNA-dependent" NARROW [] -synonym: "transcription activator activity" RELATED [] -synonym: "up regulation of gene-specific transcription" RELATED [] -synonym: "up regulation of transcription, DNA-dependent" EXACT [] -synonym: "up-regulation of gene-specific transcription" RELATED [] -synonym: "up-regulation of transcription, DNA-dependent" EXACT [] -synonym: "upregulation of gene-specific transcription" RELATED [] -synonym: "upregulation of transcription, DNA-dependent" EXACT [] -is_a: GO:0006355 ! regulation of DNA-templated transcription -is_a: GO:0010557 ! positive regulation of macromolecule biosynthetic process -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006351 ! DNA-templated transcription -relationship: positively_regulates GO:0006351 ! DNA-templated transcription +intersection_of: RO:0002213 GO:0006508 ! positively regulates proteolysis +relationship: RO:0002213 GO:0006508 ! positively regulates proteolysis [Term] id: GO:0045900 @@ -82684,8 +82204,8 @@ synonym: "inhibition of translational elongation" NARROW [] is_a: GO:0006448 ! regulation of translational elongation is_a: GO:0017148 ! negative regulation of translation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006414 ! translational elongation -relationship: negatively_regulates GO:0006414 ! translational elongation +intersection_of: RO:0002212 GO:0006414 ! negatively regulates translational elongation +relationship: RO:0002212 GO:0006414 ! negatively regulates translational elongation [Term] id: GO:0045901 @@ -82700,8 +82220,8 @@ synonym: "upregulation of translational elongation" EXACT [] is_a: GO:0006448 ! regulation of translational elongation is_a: GO:0045727 ! positive regulation of translation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006414 ! translational elongation -relationship: positively_regulates GO:0006414 ! translational elongation +intersection_of: RO:0002213 GO:0006414 ! positively regulates translational elongation +relationship: RO:0002213 GO:0006414 ! positively regulates translational elongation [Term] id: GO:0045904 @@ -82716,8 +82236,8 @@ is_a: GO:0006449 ! regulation of translational termination is_a: GO:0017148 ! negative regulation of translation is_a: GO:0043242 ! negative regulation of protein-containing complex disassembly intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006415 ! translational termination -relationship: negatively_regulates GO:0006415 ! translational termination +intersection_of: RO:0002212 GO:0006415 ! negatively regulates translational termination +relationship: RO:0002212 GO:0006415 ! negatively regulates translational termination [Term] id: GO:0045905 @@ -82733,8 +82253,8 @@ is_a: GO:0006449 ! regulation of translational termination is_a: GO:0043243 ! positive regulation of protein-containing complex disassembly is_a: GO:0045727 ! positive regulation of translation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006415 ! translational termination -relationship: positively_regulates GO:0006415 ! translational termination +intersection_of: RO:0002213 GO:0006415 ! positively regulates translational termination +relationship: RO:0002213 GO:0006415 ! positively regulates translational termination [Term] id: GO:0045910 @@ -82748,8 +82268,8 @@ synonym: "inhibition of DNA recombination" NARROW [] is_a: GO:0000018 ! regulation of DNA recombination is_a: GO:0051053 ! negative regulation of DNA metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006310 ! DNA recombination -relationship: negatively_regulates GO:0006310 ! DNA recombination +intersection_of: RO:0002212 GO:0006310 ! negatively regulates DNA recombination +relationship: RO:0002212 GO:0006310 ! negatively regulates DNA recombination [Term] id: GO:0045911 @@ -82764,8 +82284,8 @@ synonym: "upregulation of DNA recombination" EXACT [] is_a: GO:0000018 ! regulation of DNA recombination is_a: GO:0051054 ! positive regulation of DNA metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006310 ! DNA recombination -relationship: positively_regulates GO:0006310 ! DNA recombination +intersection_of: RO:0002213 GO:0006310 ! positively regulates DNA recombination +relationship: RO:0002213 GO:0006310 ! positively regulates DNA recombination [Term] id: GO:0045912 @@ -82780,8 +82300,8 @@ synonym: "negative regulation of carbohydrate metabolism" EXACT [] is_a: GO:0006109 ! regulation of carbohydrate metabolic process is_a: GO:0009892 ! negative regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0005975 ! carbohydrate metabolic process -relationship: negatively_regulates GO:0005975 ! carbohydrate metabolic process +intersection_of: RO:0002212 GO:0005975 ! negatively regulates carbohydrate metabolic process +relationship: RO:0002212 GO:0005975 ! negatively regulates carbohydrate metabolic process [Term] id: GO:0045913 @@ -82797,8 +82317,8 @@ synonym: "upregulation of carbohydrate metabolic process" EXACT [] is_a: GO:0006109 ! regulation of carbohydrate metabolic process is_a: GO:0009893 ! positive regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0005975 ! carbohydrate metabolic process -relationship: positively_regulates GO:0005975 ! carbohydrate metabolic process +intersection_of: RO:0002213 GO:0005975 ! positively regulates carbohydrate metabolic process +relationship: RO:0002213 GO:0005975 ! positively regulates carbohydrate metabolic process [Term] id: GO:0045914 @@ -82813,8 +82333,8 @@ synonym: "negative regulation of catecholamine metabolism" EXACT [] is_a: GO:0033239 ! negative regulation of amine metabolic process is_a: GO:0042069 ! regulation of catecholamine metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006584 ! catecholamine metabolic process -relationship: negatively_regulates GO:0006584 ! catecholamine metabolic process +intersection_of: RO:0002212 GO:0006584 ! negatively regulates catecholamine metabolic process +relationship: RO:0002212 GO:0006584 ! negatively regulates catecholamine metabolic process [Term] id: GO:0045915 @@ -82830,8 +82350,8 @@ synonym: "upregulation of catecholamine metabolic process" EXACT [] is_a: GO:0033240 ! positive regulation of amine metabolic process is_a: GO:0042069 ! regulation of catecholamine metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006584 ! catecholamine metabolic process -relationship: positively_regulates GO:0006584 ! catecholamine metabolic process +intersection_of: RO:0002213 GO:0006584 ! positively regulates catecholamine metabolic process +relationship: RO:0002213 GO:0006584 ! positively regulates catecholamine metabolic process [Term] id: GO:0045920 @@ -82845,8 +82365,8 @@ synonym: "inhibition of exocytosis" NARROW [] is_a: GO:0017157 ! regulation of exocytosis is_a: GO:1903531 ! negative regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006887 ! exocytosis -relationship: negatively_regulates GO:0006887 ! exocytosis +intersection_of: RO:0002212 GO:0006887 ! negatively regulates exocytosis +relationship: RO:0002212 GO:0006887 ! negatively regulates exocytosis [Term] id: GO:0045921 @@ -82861,8 +82381,8 @@ synonym: "upregulation of exocytosis" EXACT [] is_a: GO:0017157 ! regulation of exocytosis is_a: GO:1903532 ! positive regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006887 ! exocytosis -relationship: positively_regulates GO:0006887 ! exocytosis +intersection_of: RO:0002213 GO:0006887 ! positively regulates exocytosis +relationship: RO:0002213 GO:0006887 ! positively regulates exocytosis [Term] id: GO:0045922 @@ -82875,12 +82395,11 @@ synonym: "downregulation of fatty acid metabolic process" EXACT [] synonym: "inhibition of fatty acid metabolic process" NARROW [] synonym: "negative regulation of fatty acid metabolism" EXACT [] is_a: GO:0019217 ! regulation of fatty acid metabolic process -is_a: GO:0031324 ! negative regulation of cellular metabolic process is_a: GO:0045833 ! negative regulation of lipid metabolic process is_a: GO:0062014 ! negative regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006631 ! fatty acid metabolic process -relationship: negatively_regulates GO:0006631 ! fatty acid metabolic process +intersection_of: RO:0002212 GO:0006631 ! negatively regulates fatty acid metabolic process +relationship: RO:0002212 GO:0006631 ! negatively regulates fatty acid metabolic process [Term] id: GO:0045923 @@ -82894,12 +82413,11 @@ synonym: "up regulation of fatty acid metabolic process" EXACT [] synonym: "up-regulation of fatty acid metabolic process" EXACT [] synonym: "upregulation of fatty acid metabolic process" EXACT [] is_a: GO:0019217 ! regulation of fatty acid metabolic process -is_a: GO:0031325 ! positive regulation of cellular metabolic process is_a: GO:0045834 ! positive regulation of lipid metabolic process is_a: GO:0062013 ! positive regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006631 ! fatty acid metabolic process -relationship: positively_regulates GO:0006631 ! fatty acid metabolic process +intersection_of: RO:0002213 GO:0006631 ! positively regulates fatty acid metabolic process +relationship: RO:0002213 GO:0006631 ! positively regulates fatty acid metabolic process [Term] id: GO:0045926 @@ -82913,8 +82431,8 @@ synonym: "inhibition of growth" NARROW [] is_a: GO:0040008 ! regulation of growth is_a: GO:0048519 ! negative regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0040007 ! growth -relationship: negatively_regulates GO:0040007 ! growth +intersection_of: RO:0002212 GO:0040007 ! negatively regulates growth +relationship: RO:0002212 GO:0040007 ! negatively regulates growth [Term] id: GO:0045927 @@ -82929,8 +82447,8 @@ synonym: "upregulation of growth" EXACT [] is_a: GO:0040008 ! regulation of growth is_a: GO:0048518 ! positive regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0040007 ! growth -relationship: positively_regulates GO:0040007 ! growth +intersection_of: RO:0002213 GO:0040007 ! positively regulates growth +relationship: RO:0002213 GO:0040007 ! positively regulates growth [Term] id: GO:0045928 @@ -82946,8 +82464,8 @@ is_a: GO:0007556 ! regulation of juvenile hormone metabolic process is_a: GO:0032351 ! negative regulation of hormone metabolic process is_a: GO:0045827 ! negative regulation of isoprenoid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006716 ! juvenile hormone metabolic process -relationship: negatively_regulates GO:0006716 ! juvenile hormone metabolic process +intersection_of: RO:0002212 GO:0006716 ! negatively regulates juvenile hormone metabolic process +relationship: RO:0002212 GO:0006716 ! negatively regulates juvenile hormone metabolic process [Term] id: GO:0045929 @@ -82964,8 +82482,8 @@ is_a: GO:0007556 ! regulation of juvenile hormone metabolic process is_a: GO:0032352 ! positive regulation of hormone metabolic process is_a: GO:0045828 ! positive regulation of isoprenoid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006716 ! juvenile hormone metabolic process -relationship: positively_regulates GO:0006716 ! juvenile hormone metabolic process +intersection_of: RO:0002213 GO:0006716 ! positively regulates juvenile hormone metabolic process +relationship: RO:0002213 GO:0006716 ! positively regulates juvenile hormone metabolic process [Term] id: GO:0045930 @@ -82981,8 +82499,8 @@ synonym: "negative regulation of progression through mitotic cell cycle" EXACT [ is_a: GO:0007346 ! regulation of mitotic cell cycle is_a: GO:0045786 ! negative regulation of cell cycle intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0000278 ! mitotic cell cycle -relationship: negatively_regulates GO:0000278 ! mitotic cell cycle +intersection_of: RO:0002212 GO:0000278 ! negatively regulates mitotic cell cycle +relationship: RO:0002212 GO:0000278 ! negatively regulates mitotic cell cycle [Term] id: GO:0045931 @@ -82999,8 +82517,8 @@ synonym: "upregulation of progression through mitotic cell cycle" EXACT [] is_a: GO:0007346 ! regulation of mitotic cell cycle is_a: GO:0045787 ! positive regulation of cell cycle intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0000278 ! mitotic cell cycle -relationship: positively_regulates GO:0000278 ! mitotic cell cycle +intersection_of: RO:0002213 GO:0000278 ! positively regulates mitotic cell cycle +relationship: RO:0002213 GO:0000278 ! positively regulates mitotic cell cycle [Term] id: GO:0045932 @@ -83014,8 +82532,8 @@ synonym: "inhibition of muscle contraction" NARROW [] is_a: GO:0006937 ! regulation of muscle contraction is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006936 ! muscle contraction -relationship: negatively_regulates GO:0006936 ! muscle contraction +intersection_of: RO:0002212 GO:0006936 ! negatively regulates muscle contraction +relationship: RO:0002212 GO:0006936 ! negatively regulates muscle contraction [Term] id: GO:0045933 @@ -83030,8 +82548,8 @@ synonym: "upregulation of muscle contraction" EXACT [] is_a: GO:0006937 ! regulation of muscle contraction is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006936 ! muscle contraction -relationship: positively_regulates GO:0006936 ! muscle contraction +intersection_of: RO:0002213 GO:0006936 ! positively regulates muscle contraction +relationship: RO:0002213 GO:0006936 ! positively regulates muscle contraction [Term] id: GO:0045934 @@ -83047,8 +82565,8 @@ synonym: "negative regulation of nucleobase, nucleoside, nucleotide and nucleic is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0019219 ! regulation of nucleobase-containing compound metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006139 ! nucleobase-containing compound metabolic process -relationship: negatively_regulates GO:0006139 ! nucleobase-containing compound metabolic process +intersection_of: RO:0002212 GO:0006139 ! negatively regulates nucleobase-containing compound metabolic process +relationship: RO:0002212 GO:0006139 ! negatively regulates nucleobase-containing compound metabolic process [Term] id: GO:0045935 @@ -83065,8 +82583,8 @@ synonym: "upregulation of nucleobase, nucleoside, nucleotide and nucleic acid me is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0019219 ! regulation of nucleobase-containing compound metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006139 ! nucleobase-containing compound metabolic process -relationship: positively_regulates GO:0006139 ! nucleobase-containing compound metabolic process +intersection_of: RO:0002213 GO:0006139 ! positively regulates nucleobase-containing compound metabolic process +relationship: RO:0002213 GO:0006139 ! positively regulates nucleobase-containing compound metabolic process [Term] id: GO:0045936 @@ -83081,8 +82599,8 @@ synonym: "negative regulation of phosphate metabolism" EXACT [] is_a: GO:0010563 ! negative regulation of phosphorus metabolic process is_a: GO:0019220 ! regulation of phosphate metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006796 ! phosphate-containing compound metabolic process -relationship: negatively_regulates GO:0006796 ! phosphate-containing compound metabolic process +intersection_of: RO:0002212 GO:0006796 ! negatively regulates phosphate-containing compound metabolic process +relationship: RO:0002212 GO:0006796 ! negatively regulates phosphate-containing compound metabolic process [Term] id: GO:0045937 @@ -83098,8 +82616,8 @@ synonym: "upregulation of phosphate metabolic process" EXACT [] is_a: GO:0010562 ! positive regulation of phosphorus metabolic process is_a: GO:0019220 ! regulation of phosphate metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006796 ! phosphate-containing compound metabolic process -relationship: positively_regulates GO:0006796 ! phosphate-containing compound metabolic process +intersection_of: RO:0002213 GO:0006796 ! positively regulates phosphate-containing compound metabolic process +relationship: RO:0002213 GO:0006796 ! positively regulates phosphate-containing compound metabolic process [Term] id: GO:0045938 @@ -83116,8 +82634,8 @@ is_a: GO:0042753 ! positive regulation of circadian rhythm is_a: GO:0045187 ! regulation of circadian sleep/wake cycle, sleep is_a: GO:0048520 ! positive regulation of behavior intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0050802 ! circadian sleep/wake cycle, sleep -relationship: positively_regulates GO:0050802 ! circadian sleep/wake cycle, sleep +intersection_of: RO:0002213 GO:0050802 ! positively regulates circadian sleep/wake cycle, sleep +relationship: RO:0002213 GO:0050802 ! positively regulates circadian sleep/wake cycle, sleep [Term] id: GO:0045939 @@ -83132,8 +82650,8 @@ synonym: "negative regulation of steroid metabolism" EXACT [] is_a: GO:0019218 ! regulation of steroid metabolic process is_a: GO:0045833 ! negative regulation of lipid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008202 ! steroid metabolic process -relationship: negatively_regulates GO:0008202 ! steroid metabolic process +intersection_of: RO:0002212 GO:0008202 ! negatively regulates steroid metabolic process +relationship: RO:0002212 GO:0008202 ! negatively regulates steroid metabolic process [Term] id: GO:0045940 @@ -83149,36 +82667,8 @@ synonym: "upregulation of steroid metabolic process" EXACT [] is_a: GO:0019218 ! regulation of steroid metabolic process is_a: GO:0045834 ! positive regulation of lipid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008202 ! steroid metabolic process -relationship: positively_regulates GO:0008202 ! steroid metabolic process - -[Term] -id: GO:0045944 -name: positive regulation of transcription by RNA polymerase II -namespace: biological_process -alt_id: GO:0010552 -alt_id: GO:0045817 -def: "Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter." [GOC:go_curators, GOC:txnOH] -synonym: "activation of global transcription from RNA polymerase II promoter" RELATED [] -synonym: "activation of transcription from RNA polymerase II promoter" EXACT [] -synonym: "positive regulation of gene-specific transcription from RNA polymerase II promoter" RELATED [] -synonym: "positive regulation of global transcription from Pol II promoter" RELATED [] -synonym: "positive regulation of transcription from Pol II promoter" EXACT [] -synonym: "positive regulation of transcription from RNA polymerase II promoter" EXACT [] -synonym: "positive regulation of transcription from RNA polymerase II promoter, global" RELATED [] -synonym: "stimulation of global transcription from RNA polymerase II promoter" NARROW [] -synonym: "stimulation of transcription from RNA polymerase II promoter" EXACT [] -synonym: "up regulation of global transcription from RNA polymerase II promoter" RELATED [] -synonym: "up regulation of transcription from RNA polymerase II promoter" EXACT [] -synonym: "up-regulation of global transcription from RNA polymerase II promoter" RELATED [] -synonym: "up-regulation of transcription from RNA polymerase II promoter" EXACT [] -synonym: "upregulation of global transcription from RNA polymerase II promoter" RELATED [] -synonym: "upregulation of transcription from RNA polymerase II promoter" EXACT [] -is_a: GO:0006357 ! regulation of transcription by RNA polymerase II -is_a: GO:0045893 ! positive regulation of DNA-templated transcription -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006366 ! transcription by RNA polymerase II -relationship: positively_regulates GO:0006366 ! transcription by RNA polymerase II +intersection_of: RO:0002213 GO:0008202 ! positively regulates steroid metabolic process +relationship: RO:0002213 GO:0008202 ! positively regulates steroid metabolic process [Term] id: GO:0045947 @@ -83192,8 +82682,8 @@ synonym: "inhibition of translational initiation" NARROW [] is_a: GO:0006446 ! regulation of translational initiation is_a: GO:0017148 ! negative regulation of translation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006413 ! translational initiation -relationship: negatively_regulates GO:0006413 ! translational initiation +intersection_of: RO:0002212 GO:0006413 ! negatively regulates translational initiation +relationship: RO:0002212 GO:0006413 ! negatively regulates translational initiation [Term] id: GO:0045948 @@ -83208,8 +82698,8 @@ synonym: "upregulation of translational initiation" EXACT [] is_a: GO:0006446 ! regulation of translational initiation is_a: GO:0045727 ! positive regulation of translation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006413 ! translational initiation -relationship: positively_regulates GO:0006413 ! translational initiation +intersection_of: RO:0002213 GO:0006413 ! positively regulates translational initiation +relationship: RO:0002213 GO:0006413 ! positively regulates translational initiation [Term] id: GO:0045952 @@ -83220,11 +82710,10 @@ synonym: "regulation of juvenile hormone breakdown" EXACT [] synonym: "regulation of juvenile hormone catabolism" EXACT [] synonym: "regulation of juvenile hormone degradation" EXACT [] is_a: GO:0007556 ! regulation of juvenile hormone metabolic process -is_a: GO:0031329 ! regulation of cellular catabolic process is_a: GO:0050994 ! regulation of lipid catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006719 ! juvenile hormone catabolic process -relationship: regulates GO:0006719 ! juvenile hormone catabolic process +intersection_of: RO:0002211 GO:0006719 ! regulates (processual) juvenile hormone catabolic process +relationship: RO:0002211 GO:0006719 ! regulates (processual) juvenile hormone catabolic process [Term] id: GO:0045953 @@ -83246,8 +82735,8 @@ is_a: GO:0001911 ! negative regulation of leukocyte mediated cytotoxicity is_a: GO:0002716 ! negative regulation of natural killer cell mediated immunity is_a: GO:0042269 ! regulation of natural killer cell mediated cytotoxicity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042267 ! natural killer cell mediated cytotoxicity -relationship: negatively_regulates GO:0042267 ! natural killer cell mediated cytotoxicity +intersection_of: RO:0002212 GO:0042267 ! negatively regulates natural killer cell mediated cytotoxicity +relationship: RO:0002212 GO:0042267 ! negatively regulates natural killer cell mediated cytotoxicity [Term] id: GO:0045954 @@ -83270,8 +82759,8 @@ is_a: GO:0001912 ! positive regulation of leukocyte mediated cytotoxicity is_a: GO:0002717 ! positive regulation of natural killer cell mediated immunity is_a: GO:0042269 ! regulation of natural killer cell mediated cytotoxicity intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042267 ! natural killer cell mediated cytotoxicity -relationship: positively_regulates GO:0042267 ! natural killer cell mediated cytotoxicity +intersection_of: RO:0002213 GO:0042267 ! positively regulates natural killer cell mediated cytotoxicity +relationship: RO:0002213 GO:0042267 ! positively regulates natural killer cell mediated cytotoxicity [Term] id: GO:0045963 @@ -83286,8 +82775,8 @@ synonym: "negative regulation of dopamine metabolism" EXACT [] is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0042053 ! regulation of dopamine metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042417 ! dopamine metabolic process -relationship: negatively_regulates GO:0042417 ! dopamine metabolic process +intersection_of: RO:0002212 GO:0042417 ! negatively regulates dopamine metabolic process +relationship: RO:0002212 GO:0042417 ! negatively regulates dopamine metabolic process [Term] id: GO:0045964 @@ -83303,8 +82792,8 @@ synonym: "upregulation of dopamine metabolic process" EXACT [] is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0042053 ! regulation of dopamine metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042417 ! dopamine metabolic process -relationship: positively_regulates GO:0042417 ! dopamine metabolic process +intersection_of: RO:0002213 GO:0042417 ! positively regulates dopamine metabolic process +relationship: RO:0002213 GO:0042417 ! positively regulates dopamine metabolic process [Term] id: GO:0045968 @@ -83324,8 +82813,8 @@ is_a: GO:0032353 ! negative regulation of hormone biosynthetic process is_a: GO:0045928 ! negative regulation of juvenile hormone metabolic process is_a: GO:0051055 ! negative regulation of lipid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006718 ! juvenile hormone biosynthetic process -relationship: negatively_regulates GO:0006718 ! juvenile hormone biosynthetic process +intersection_of: RO:0002212 GO:0006718 ! negatively regulates juvenile hormone biosynthetic process +relationship: RO:0002212 GO:0006718 ! negatively regulates juvenile hormone biosynthetic process [Term] id: GO:0045969 @@ -83346,8 +82835,8 @@ is_a: GO:0045929 ! positive regulation of juvenile hormone metabolic process is_a: GO:0046886 ! positive regulation of hormone biosynthetic process is_a: GO:0046889 ! positive regulation of lipid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006718 ! juvenile hormone biosynthetic process -relationship: positively_regulates GO:0006718 ! juvenile hormone biosynthetic process +intersection_of: RO:0002213 GO:0006718 ! positively regulates juvenile hormone biosynthetic process +relationship: RO:0002213 GO:0006718 ! positively regulates juvenile hormone biosynthetic process [Term] id: GO:0045970 @@ -83361,13 +82850,12 @@ synonym: "inhibition of juvenile hormone catabolic process" NARROW [] synonym: "negative regulation of juvenile hormone breakdown" EXACT [] synonym: "negative regulation of juvenile hormone catabolism" EXACT [] synonym: "negative regulation of juvenile hormone degradation" EXACT [] -is_a: GO:0031330 ! negative regulation of cellular catabolic process is_a: GO:0045928 ! negative regulation of juvenile hormone metabolic process is_a: GO:0045952 ! regulation of juvenile hormone catabolic process is_a: GO:0050995 ! negative regulation of lipid catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006719 ! juvenile hormone catabolic process -relationship: negatively_regulates GO:0006719 ! juvenile hormone catabolic process +intersection_of: RO:0002212 GO:0006719 ! negatively regulates juvenile hormone catabolic process +relationship: RO:0002212 GO:0006719 ! negatively regulates juvenile hormone catabolic process [Term] id: GO:0045971 @@ -83382,13 +82870,12 @@ synonym: "stimulation of juvenile hormone catabolic process" NARROW [] synonym: "up regulation of juvenile hormone catabolic process" EXACT [] synonym: "up-regulation of juvenile hormone catabolic process" EXACT [] synonym: "upregulation of juvenile hormone catabolic process" EXACT [] -is_a: GO:0031331 ! positive regulation of cellular catabolic process is_a: GO:0045929 ! positive regulation of juvenile hormone metabolic process is_a: GO:0045952 ! regulation of juvenile hormone catabolic process is_a: GO:0050996 ! positive regulation of lipid catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006719 ! juvenile hormone catabolic process -relationship: positively_regulates GO:0006719 ! juvenile hormone catabolic process +intersection_of: RO:0002213 GO:0006719 ! positively regulates juvenile hormone catabolic process +relationship: RO:0002213 GO:0006719 ! positively regulates juvenile hormone catabolic process [Term] id: GO:0045972 @@ -83404,9 +82891,9 @@ is_a: GO:0032369 ! negative regulation of lipid transport is_a: GO:0046888 ! negative regulation of hormone secretion is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0045443 ! juvenile hormone secretion -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0045443 ! juvenile hormone secretion +intersection_of: RO:0002212 GO:0045443 ! negatively regulates juvenile hormone secretion +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0045443 ! negatively regulates juvenile hormone secretion [Term] id: GO:0045973 @@ -83422,8 +82909,8 @@ is_a: GO:0007558 ! regulation of juvenile hormone secretion is_a: GO:0032370 ! positive regulation of lipid transport is_a: GO:0046887 ! positive regulation of hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0045443 ! juvenile hormone secretion -relationship: positively_regulates GO:0045443 ! juvenile hormone secretion +intersection_of: RO:0002213 GO:0045443 ! positively regulates juvenile hormone secretion +relationship: RO:0002213 GO:0045443 ! positively regulates juvenile hormone secretion [Term] id: GO:0045978 @@ -83439,8 +82926,8 @@ is_a: GO:0009118 ! regulation of nucleoside metabolic process is_a: GO:0045934 ! negative regulation of nucleobase-containing compound metabolic process is_a: GO:0062014 ! negative regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009116 ! nucleoside metabolic process -relationship: negatively_regulates GO:0009116 ! nucleoside metabolic process +intersection_of: RO:0002212 GO:0009116 ! negatively regulates nucleoside metabolic process +relationship: RO:0002212 GO:0009116 ! negatively regulates nucleoside metabolic process [Term] id: GO:0045979 @@ -83457,8 +82944,8 @@ is_a: GO:0009118 ! regulation of nucleoside metabolic process is_a: GO:0045935 ! positive regulation of nucleobase-containing compound metabolic process is_a: GO:0062013 ! positive regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009116 ! nucleoside metabolic process -relationship: positively_regulates GO:0009116 ! nucleoside metabolic process +intersection_of: RO:0002213 GO:0009116 ! positively regulates nucleoside metabolic process +relationship: RO:0002213 GO:0009116 ! positively regulates nucleoside metabolic process [Term] id: GO:0045980 @@ -83475,8 +82962,8 @@ is_a: GO:0045934 ! negative regulation of nucleobase-containing compound metabol is_a: GO:0045936 ! negative regulation of phosphate metabolic process is_a: GO:0062014 ! negative regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009117 ! nucleotide metabolic process -relationship: negatively_regulates GO:0009117 ! nucleotide metabolic process +intersection_of: RO:0002212 GO:0009117 ! negatively regulates nucleotide metabolic process +relationship: RO:0002212 GO:0009117 ! negatively regulates nucleotide metabolic process [Term] id: GO:0045981 @@ -83494,8 +82981,8 @@ is_a: GO:0045935 ! positive regulation of nucleobase-containing compound metabol is_a: GO:0045937 ! positive regulation of phosphate metabolic process is_a: GO:0062013 ! positive regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009117 ! nucleotide metabolic process -relationship: positively_regulates GO:0009117 ! nucleotide metabolic process +intersection_of: RO:0002213 GO:0009117 ! positively regulates nucleotide metabolic process +relationship: RO:0002213 GO:0009117 ! positively regulates nucleotide metabolic process [Term] id: GO:0045982 @@ -83512,8 +82999,8 @@ is_a: GO:0006141 ! regulation of purine nucleobase metabolic process is_a: GO:0045934 ! negative regulation of nucleobase-containing compound metabolic process is_a: GO:0062014 ! negative regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006144 ! purine nucleobase metabolic process -relationship: negatively_regulates GO:0006144 ! purine nucleobase metabolic process +intersection_of: RO:0002212 GO:0006144 ! negatively regulates purine nucleobase metabolic process +relationship: RO:0002212 GO:0006144 ! negatively regulates purine nucleobase metabolic process [Term] id: GO:0045983 @@ -83531,8 +83018,8 @@ is_a: GO:0006141 ! regulation of purine nucleobase metabolic process is_a: GO:0045935 ! positive regulation of nucleobase-containing compound metabolic process is_a: GO:0062013 ! positive regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006144 ! purine nucleobase metabolic process -relationship: positively_regulates GO:0006144 ! purine nucleobase metabolic process +intersection_of: RO:0002213 GO:0006144 ! positively regulates purine nucleobase metabolic process +relationship: RO:0002213 GO:0006144 ! positively regulates purine nucleobase metabolic process [Term] id: GO:0045986 @@ -83547,8 +83034,8 @@ synonym: "smooth muscle relaxation" RELATED [] is_a: GO:0006940 ! regulation of smooth muscle contraction is_a: GO:0045932 ! negative regulation of muscle contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006939 ! smooth muscle contraction -relationship: negatively_regulates GO:0006939 ! smooth muscle contraction +intersection_of: RO:0002212 GO:0006939 ! negatively regulates smooth muscle contraction +relationship: RO:0002212 GO:0006939 ! negatively regulates smooth muscle contraction [Term] id: GO:0045987 @@ -83563,8 +83050,8 @@ synonym: "upregulation of smooth muscle contraction" EXACT [] is_a: GO:0006940 ! regulation of smooth muscle contraction is_a: GO:0045933 ! positive regulation of muscle contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006939 ! smooth muscle contraction -relationship: positively_regulates GO:0006939 ! smooth muscle contraction +intersection_of: RO:0002213 GO:0006939 ! positively regulates smooth muscle contraction +relationship: RO:0002213 GO:0006939 ! positively regulates smooth muscle contraction [Term] id: GO:0045988 @@ -83578,8 +83065,8 @@ synonym: "inhibition of striated muscle contraction" NARROW [] is_a: GO:0006942 ! regulation of striated muscle contraction is_a: GO:0045932 ! negative regulation of muscle contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006941 ! striated muscle contraction -relationship: negatively_regulates GO:0006941 ! striated muscle contraction +intersection_of: RO:0002212 GO:0006941 ! negatively regulates striated muscle contraction +relationship: RO:0002212 GO:0006941 ! negatively regulates striated muscle contraction [Term] id: GO:0045989 @@ -83594,8 +83081,8 @@ synonym: "upregulation of striated muscle contraction" EXACT [] is_a: GO:0006942 ! regulation of striated muscle contraction is_a: GO:0045933 ! positive regulation of muscle contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006941 ! striated muscle contraction -relationship: positively_regulates GO:0006941 ! striated muscle contraction +intersection_of: RO:0002213 GO:0006941 ! positively regulates striated muscle contraction +relationship: RO:0002213 GO:0006941 ! positively regulates striated muscle contraction [Term] id: GO:0045992 @@ -83610,8 +83097,8 @@ is_a: GO:0045995 ! regulation of embryonic development is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009790 ! embryo development -relationship: negatively_regulates GO:0009790 ! embryo development +intersection_of: RO:0002212 GO:0009790 ! negatively regulates embryo development +relationship: RO:0002212 GO:0009790 ! negatively regulates embryo development [Term] id: GO:0045995 @@ -83620,8 +83107,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of embryonic development." [GOC:go_curators] is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009790 ! embryo development -relationship: regulates GO:0009790 ! embryo development +intersection_of: RO:0002211 GO:0009790 ! regulates (processual) embryo development +relationship: RO:0002211 GO:0009790 ! regulates (processual) embryo development [Term] id: GO:0046010 @@ -83637,8 +83124,8 @@ synonym: "upregulation of circadian sleep/wake cycle, non-REM sleep" EXACT [] is_a: GO:0045188 ! regulation of circadian sleep/wake cycle, non-REM sleep is_a: GO:0045938 ! positive regulation of circadian sleep/wake cycle, sleep intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042748 ! circadian sleep/wake cycle, non-REM sleep -relationship: positively_regulates GO:0042748 ! circadian sleep/wake cycle, non-REM sleep +intersection_of: RO:0002213 GO:0042748 ! positively regulates circadian sleep/wake cycle, non-REM sleep +relationship: RO:0002213 GO:0042748 ! positively regulates circadian sleep/wake cycle, non-REM sleep [Term] id: GO:0046013 @@ -83651,8 +83138,8 @@ synonym: "regulation of T-cell homeostatic proliferation" EXACT [] synonym: "regulation of T-lymphocyte homeostatic proliferation" EXACT [] is_a: GO:0042129 ! regulation of T cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001777 ! T cell homeostatic proliferation -relationship: regulates GO:0001777 ! T cell homeostatic proliferation +intersection_of: RO:0002211 GO:0001777 ! regulates (processual) T cell homeostatic proliferation +relationship: RO:0002211 GO:0001777 ! regulates (processual) T cell homeostatic proliferation [Term] id: GO:0046014 @@ -83670,8 +83157,8 @@ synonym: "negative regulation of T-lymphocyte homeostatic proliferation" EXACT [ is_a: GO:0042130 ! negative regulation of T cell proliferation is_a: GO:0046013 ! regulation of T cell homeostatic proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001777 ! T cell homeostatic proliferation -relationship: negatively_regulates GO:0001777 ! T cell homeostatic proliferation +intersection_of: RO:0002212 GO:0001777 ! negatively regulates T cell homeostatic proliferation +relationship: RO:0002212 GO:0001777 ! negatively regulates T cell homeostatic proliferation [Term] id: GO:0046031 @@ -83681,8 +83168,8 @@ def: "The chemical reactions and pathways involving ADP, adenosine 5'-diphosphat synonym: "ADP metabolism" EXACT [] is_a: GO:0009132 ! nucleoside diphosphate metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:456216 ! ADP(3-) -relationship: has_primary_input_or_output CHEBI:456216 ! ADP(3-) +intersection_of: RO:0004007 CHEBI:456216 ! has primary input or output ADP(3-) +relationship: RO:0004007 CHEBI:456216 ! has primary input or output ADP(3-) [Term] id: GO:0046032 @@ -83695,8 +83182,8 @@ synonym: "ADP degradation" EXACT [] is_a: GO:0009134 ! nucleoside diphosphate catabolic process is_a: GO:0046031 ! ADP metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:456216 ! ADP(3-) -relationship: has_primary_input CHEBI:456216 ! ADP(3-) +intersection_of: RO:0004009 CHEBI:456216 ! has primary input ADP(3-) +relationship: RO:0004009 CHEBI:456216 ! has primary input ADP(3-) [Term] id: GO:0046034 @@ -83706,8 +83193,8 @@ def: "The chemical reactions and pathways involving ATP, adenosine triphosphate, synonym: "ATP metabolism" EXACT [] is_a: GO:0009141 ! nucleoside triphosphate metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:30616 ! ATP(4-) -relationship: has_primary_input_or_output CHEBI:30616 ! ATP(4-) +intersection_of: RO:0004007 CHEBI:30616 ! has primary input or output ATP(4-) +relationship: RO:0004007 CHEBI:30616 ! has primary input or output ATP(4-) [Term] id: GO:0046083 @@ -83717,8 +83204,8 @@ def: "The chemical reactions and pathways involving adenine, 6-aminopurine, one synonym: "adenine metabolism" EXACT [] is_a: GO:0006144 ! purine nucleobase metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:16708 ! adenine -relationship: has_primary_input_or_output CHEBI:16708 ! adenine +intersection_of: RO:0004007 CHEBI:16708 ! has primary input or output adenine +relationship: RO:0004007 CHEBI:16708 ! has primary input or output adenine [Term] id: GO:0046084 @@ -83732,8 +83219,8 @@ synonym: "adenine synthesis" EXACT [] is_a: GO:0009113 ! purine nucleobase biosynthetic process is_a: GO:0046083 ! adenine metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:16708 ! adenine -relationship: has_primary_output CHEBI:16708 ! adenine +intersection_of: RO:0004008 CHEBI:16708 ! has primary output adenine +relationship: RO:0004008 CHEBI:16708 ! has primary output adenine [Term] id: GO:0046085 @@ -83743,8 +83230,8 @@ def: "The chemical reactions and pathways involving adenosine, adenine riboside, synonym: "adenosine metabolism" EXACT [] is_a: GO:0046128 ! purine ribonucleoside metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:16335 ! adenosine -relationship: has_primary_input_or_output CHEBI:16335 ! adenosine +intersection_of: RO:0004007 CHEBI:16335 ! has primary input or output adenosine +relationship: RO:0004007 CHEBI:16335 ! has primary input or output adenosine [Term] id: GO:0046086 @@ -83758,8 +83245,8 @@ synonym: "adenosine synthesis" EXACT [] is_a: GO:0046085 ! adenosine metabolic process is_a: GO:0046129 ! purine ribonucleoside biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:16335 ! adenosine -relationship: has_primary_output CHEBI:16335 ! adenosine +intersection_of: RO:0004008 CHEBI:16335 ! has primary output adenosine +relationship: RO:0004008 CHEBI:16335 ! has primary output adenosine [Term] id: GO:0046112 @@ -83770,11 +83257,11 @@ synonym: "nucleobase anabolism" EXACT [] synonym: "nucleobase biosynthesis" EXACT [] synonym: "nucleobase formation" EXACT [] synonym: "nucleobase synthesis" EXACT [] +is_a: GO:0009058 ! biosynthetic process is_a: GO:0009112 ! nucleobase metabolic process -is_a: GO:1901566 ! organonitrogen compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:18282 ! nucleobase -relationship: has_primary_output CHEBI:18282 ! nucleobase +intersection_of: RO:0004008 CHEBI:18282 ! has primary output nucleobase +relationship: RO:0004008 CHEBI:18282 ! has primary output nucleobase [Term] id: GO:0046113 @@ -83784,11 +83271,11 @@ def: "The chemical reactions and pathways resulting in the breakdown of a nucleo synonym: "nucleobase breakdown" EXACT [] synonym: "nucleobase catabolism" EXACT [] synonym: "nucleobase degradation" EXACT [] +is_a: GO:0009056 ! catabolic process is_a: GO:0009112 ! nucleobase metabolic process -is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:18282 ! nucleobase -relationship: has_primary_input CHEBI:18282 ! nucleobase +intersection_of: RO:0004009 CHEBI:18282 ! has primary input nucleobase +relationship: RO:0004009 CHEBI:18282 ! has primary input nucleobase [Term] id: GO:0046128 @@ -83799,8 +83286,8 @@ synonym: "purine ribonucleoside metabolism" EXACT [] is_a: GO:0009119 ! ribonucleoside metabolic process is_a: GO:0042278 ! purine nucleoside metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26399 ! purine ribonucleoside -relationship: has_primary_input_or_output CHEBI:26399 ! purine ribonucleoside +intersection_of: RO:0004007 CHEBI:26399 ! has primary input or output purine ribonucleoside +relationship: RO:0004007 CHEBI:26399 ! has primary input or output purine ribonucleoside [Term] id: GO:0046129 @@ -83815,8 +83302,8 @@ is_a: GO:0042451 ! purine nucleoside biosynthetic process is_a: GO:0042455 ! ribonucleoside biosynthetic process is_a: GO:0046128 ! purine ribonucleoside metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26399 ! purine ribonucleoside -relationship: has_primary_output CHEBI:26399 ! purine ribonucleoside +intersection_of: RO:0004008 CHEBI:26399 ! has primary output purine ribonucleoside +relationship: RO:0004008 CHEBI:26399 ! has primary output purine ribonucleoside [Term] id: GO:0046130 @@ -83830,8 +83317,8 @@ is_a: GO:0006152 ! purine nucleoside catabolic process is_a: GO:0042454 ! ribonucleoside catabolic process is_a: GO:0046128 ! purine ribonucleoside metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:26399 ! purine ribonucleoside -relationship: has_primary_input CHEBI:26399 ! purine ribonucleoside +intersection_of: RO:0004009 CHEBI:26399 ! has primary input purine ribonucleoside +relationship: RO:0004009 CHEBI:26399 ! has primary input purine ribonucleoside [Term] id: GO:0046148 @@ -83856,8 +83343,8 @@ is_a: GO:0006066 ! alcohol metabolic process is_a: GO:0044282 ! small molecule catabolic process is_a: GO:1901616 ! organic hydroxy compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:30879 ! alcohol -relationship: has_primary_input CHEBI:30879 ! alcohol +intersection_of: RO:0004009 CHEBI:30879 ! has primary input alcohol +relationship: RO:0004009 CHEBI:30879 ! has primary input alcohol [Term] id: GO:0046165 @@ -83872,8 +83359,8 @@ is_a: GO:0006066 ! alcohol metabolic process is_a: GO:0044283 ! small molecule biosynthetic process is_a: GO:1901617 ! organic hydroxy compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:30879 ! alcohol -relationship: has_primary_output CHEBI:30879 ! alcohol +intersection_of: RO:0004008 CHEBI:30879 ! has primary output alcohol +relationship: RO:0004008 CHEBI:30879 ! has primary output alcohol [Term] id: GO:0046184 @@ -83884,11 +83371,11 @@ synonym: "aldehyde anabolism" EXACT [] synonym: "aldehyde biosynthesis" EXACT [] synonym: "aldehyde formation" EXACT [] synonym: "aldehyde synthesis" EXACT [] -is_a: GO:0006081 ! cellular aldehyde metabolic process -is_a: GO:0044249 ! cellular biosynthetic process +is_a: GO:0006081 ! aldehyde metabolic process +is_a: GO:0009058 ! biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:17478 ! aldehyde -relationship: has_primary_output CHEBI:17478 ! aldehyde +intersection_of: RO:0004008 CHEBI:17478 ! has primary output aldehyde +relationship: RO:0004008 CHEBI:17478 ! has primary output aldehyde [Term] id: GO:0046185 @@ -83898,11 +83385,11 @@ def: "The chemical reactions and pathways resulting in the breakdown of aldehyde synonym: "aldehyde breakdown" EXACT [] synonym: "aldehyde catabolism" EXACT [] synonym: "aldehyde degradation" EXACT [] -is_a: GO:0006081 ! cellular aldehyde metabolic process -is_a: GO:0044248 ! cellular catabolic process +is_a: GO:0006081 ! aldehyde metabolic process +is_a: GO:0009056 ! catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:17478 ! aldehyde -relationship: has_primary_input CHEBI:17478 ! aldehyde +intersection_of: RO:0004009 CHEBI:17478 ! has primary input aldehyde +relationship: RO:0004009 CHEBI:17478 ! has primary input aldehyde [Term] id: GO:0046189 @@ -83916,8 +83403,8 @@ synonym: "phenol-containing compound synthesis" EXACT [] is_a: GO:0018958 ! phenol-containing compound metabolic process is_a: GO:1901617 ! organic hydroxy compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:33853 ! phenols -relationship: has_primary_output CHEBI:33853 ! phenols +intersection_of: RO:0004008 CHEBI:33853 ! has primary output phenols +relationship: RO:0004008 CHEBI:33853 ! has primary output phenols [Term] id: GO:0046219 @@ -83932,8 +83419,8 @@ is_a: GO:0006586 ! indolalkylamine metabolic process is_a: GO:0042401 ! biogenic amine biosynthetic process is_a: GO:0042435 ! indole-containing compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:38631 ! aminoalkylindole -relationship: has_primary_output CHEBI:38631 ! aminoalkylindole +intersection_of: RO:0004008 CHEBI:38631 ! has primary output aminoalkylindole +relationship: RO:0004008 CHEBI:38631 ! has primary output aminoalkylindole [Term] id: GO:0046246 @@ -83948,8 +83435,8 @@ is_a: GO:0008299 ! isoprenoid biosynthetic process is_a: GO:0042214 ! terpene metabolic process is_a: GO:0120251 ! hydrocarbon biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:35186 ! terpene -relationship: has_primary_output CHEBI:35186 ! terpene +intersection_of: RO:0004008 CHEBI:35186 ! has primary output terpene +relationship: RO:0004008 CHEBI:35186 ! has primary output terpene [Term] id: GO:0046247 @@ -83963,8 +83450,8 @@ is_a: GO:0008300 ! isoprenoid catabolic process is_a: GO:0042214 ! terpene metabolic process is_a: GO:0120253 ! hydrocarbon catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:35186 ! terpene -relationship: has_primary_input CHEBI:35186 ! terpene +intersection_of: RO:0004009 CHEBI:35186 ! has primary input terpene +relationship: RO:0004009 CHEBI:35186 ! has primary input terpene [Term] id: GO:0046252 @@ -83979,8 +83466,8 @@ synonym: "toluene synthesis" EXACT [] is_a: GO:0018970 ! toluene metabolic process is_a: GO:0120251 ! hydrocarbon biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:17578 ! toluene -relationship: has_primary_output CHEBI:17578 ! toluene +intersection_of: RO:0004008 CHEBI:17578 ! has primary output toluene +relationship: RO:0004008 CHEBI:17578 ! has primary output toluene [Term] id: GO:0046348 @@ -83995,8 +83482,8 @@ synonym: "aminosaccharide catabolism" EXACT [] is_a: GO:0006040 ! amino sugar metabolic process is_a: GO:1901136 ! carbohydrate derivative catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:28963 ! amino sugar -relationship: has_primary_input CHEBI:28963 ! amino sugar +intersection_of: RO:0004009 CHEBI:28963 ! has primary input amino sugar +relationship: RO:0004009 CHEBI:28963 ! has primary input amino sugar [Term] id: GO:0046349 @@ -84012,8 +83499,8 @@ synonym: "aminosaccharide biosynthetic process" EXACT [] is_a: GO:0006040 ! amino sugar metabolic process is_a: GO:1901137 ! carbohydrate derivative biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:28963 ! amino sugar -relationship: has_primary_output CHEBI:28963 ! amino sugar +intersection_of: RO:0004008 CHEBI:28963 ! has primary output amino sugar +relationship: RO:0004008 CHEBI:28963 ! has primary output amino sugar [Term] id: GO:0046358 @@ -84033,8 +83520,8 @@ synonym: "butyrate synthesis" EXACT [] is_a: GO:0019605 ! butyrate metabolic process is_a: GO:0051790 ! short-chain fatty acid biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:17968 ! butyrate -relationship: has_primary_output CHEBI:17968 ! butyrate +intersection_of: RO:0004008 CHEBI:17968 ! has primary output butyrate +relationship: RO:0004008 CHEBI:17968 ! has primary output butyrate [Term] id: GO:0046359 @@ -84052,8 +83539,8 @@ synonym: "butyrate degradation" EXACT [] is_a: GO:0019605 ! butyrate metabolic process is_a: GO:0019626 ! short-chain fatty acid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:17968 ! butyrate -relationship: has_primary_input CHEBI:17968 ! butyrate +intersection_of: RO:0004009 CHEBI:17968 ! has primary input butyrate +relationship: RO:0004009 CHEBI:17968 ! has primary input butyrate [Term] id: GO:0046364 @@ -84068,8 +83555,8 @@ is_a: GO:0005996 ! monosaccharide metabolic process is_a: GO:0016051 ! carbohydrate biosynthetic process is_a: GO:0044283 ! small molecule biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:35381 ! monosaccharide -relationship: has_primary_output CHEBI:35381 ! monosaccharide +intersection_of: RO:0004008 CHEBI:35381 ! has primary output monosaccharide +relationship: RO:0004008 CHEBI:35381 ! has primary output monosaccharide [Term] id: GO:0046365 @@ -84083,8 +83570,8 @@ is_a: GO:0005996 ! monosaccharide metabolic process is_a: GO:0016052 ! carbohydrate catabolic process is_a: GO:0044282 ! small molecule catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:35381 ! monosaccharide -relationship: has_primary_input CHEBI:35381 ! monosaccharide +intersection_of: RO:0004009 CHEBI:35381 ! has primary input monosaccharide +relationship: RO:0004009 CHEBI:35381 ! has primary input monosaccharide [Term] id: GO:0046390 @@ -84099,8 +83586,8 @@ is_a: GO:0019693 ! ribose phosphate metabolic process is_a: GO:0090407 ! organophosphate biosynthetic process is_a: GO:1901137 ! carbohydrate derivative biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26562 ! ribose phosphate -relationship: has_primary_output CHEBI:26562 ! ribose phosphate +intersection_of: RO:0004008 CHEBI:26562 ! has primary output ribose phosphate +relationship: RO:0004008 CHEBI:26562 ! has primary output ribose phosphate [Term] id: GO:0046394 @@ -84114,8 +83601,8 @@ synonym: "carboxylic acid synthesis" EXACT [] is_a: GO:0016053 ! organic acid biosynthetic process is_a: GO:0019752 ! carboxylic acid metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:29067 ! carboxylic acid anion -relationship: has_primary_output CHEBI:29067 ! carboxylic acid anion +intersection_of: RO:0004008 CHEBI:29067 ! has primary output carboxylic acid anion +relationship: RO:0004008 CHEBI:29067 ! has primary output carboxylic acid anion [Term] id: GO:0046395 @@ -84128,8 +83615,8 @@ synonym: "carboxylic acid degradation" EXACT [] is_a: GO:0016054 ! organic acid catabolic process is_a: GO:0019752 ! carboxylic acid metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:29067 ! carboxylic acid anion -relationship: has_primary_input CHEBI:29067 ! carboxylic acid anion +intersection_of: RO:0004009 CHEBI:29067 ! has primary input carboxylic acid anion +relationship: RO:0004009 CHEBI:29067 ! has primary input carboxylic acid anion [Term] id: GO:0046416 @@ -84139,8 +83626,8 @@ def: "The chemical reactions and pathways involving D-amino acids, the D-enantio synonym: "D-amino acid metabolism" EXACT [] is_a: GO:0006520 ! amino acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:59871 ! D-alpha-amino acid zwitterion -relationship: has_primary_input_or_output CHEBI:59871 ! D-alpha-amino acid zwitterion +intersection_of: RO:0004007 CHEBI:59871 ! has primary input or output D-alpha-amino acid zwitterion +relationship: RO:0004007 CHEBI:59871 ! has primary input or output D-alpha-amino acid zwitterion [Term] id: GO:0046434 @@ -84153,8 +83640,8 @@ synonym: "organophosphate degradation" EXACT [] is_a: GO:0009056 ! catabolic process is_a: GO:0019637 ! organophosphate metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:25710 ! organophosphorus compound -relationship: has_primary_input CHEBI:25710 ! organophosphorus compound +intersection_of: RO:0004009 CHEBI:25710 ! has primary input organophosphorus compound +relationship: RO:0004009 CHEBI:25710 ! has primary input organophosphorus compound [Term] id: GO:0046437 @@ -84168,8 +83655,8 @@ synonym: "D-amino acid synthesis" EXACT [] is_a: GO:0008652 ! amino acid biosynthetic process is_a: GO:0046416 ! D-amino acid metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:59871 ! D-alpha-amino acid zwitterion -relationship: has_primary_output CHEBI:59871 ! D-alpha-amino acid zwitterion +intersection_of: RO:0004008 CHEBI:59871 ! has primary output D-alpha-amino acid zwitterion +relationship: RO:0004008 CHEBI:59871 ! has primary output D-alpha-amino acid zwitterion [Term] id: GO:0046459 @@ -84180,8 +83667,8 @@ comment: While there is not universal consensus on the lengths of short-, medium synonym: "short-chain fatty acid metabolism" EXACT [] is_a: GO:0006631 ! fatty acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:58951 ! short-chain fatty acid anion -relationship: has_primary_input_or_output CHEBI:58951 ! short-chain fatty acid anion +intersection_of: RO:0004007 CHEBI:58951 ! has primary input or output short-chain fatty acid anion +relationship: RO:0004007 CHEBI:58951 ! has primary input or output short-chain fatty acid anion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26445" xsd:anyURI [Term] @@ -84194,7 +83681,13 @@ synonym: "membrane lipid catabolism" EXACT [] synonym: "membrane lipid degradation" EXACT [] synonym: "membrane lipid peroxidation" BROAD [GOC:tb] is_a: GO:0006643 ! membrane lipid metabolic process -is_a: GO:0044242 ! cellular lipid catabolic process +is_a: GO:0016042 ! lipid catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: BFO:0000066 GO:0016020 ! occurs in membrane +intersection_of: RO:0004009 CHEBI:18059 ! has primary input lipid +relationship: BFO:0000066 GO:0016020 ! occurs in membrane +relationship: RO:0004009 CHEBI:18059 ! has primary input lipid +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] id: GO:0046467 @@ -84207,7 +83700,11 @@ synonym: "membrane lipid formation" EXACT [] synonym: "membrane lipid synthesis" EXACT [] is_a: GO:0006643 ! membrane lipid metabolic process is_a: GO:0008610 ! lipid biosynthetic process -is_a: GO:0044249 ! cellular biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: BFO:0000066 GO:0016020 ! occurs in membrane +intersection_of: RO:0004008 CHEBI:18059 ! has primary output lipid +relationship: BFO:0000066 GO:0016020 ! occurs in membrane +relationship: RO:0004008 CHEBI:18059 ! has primary output lipid [Term] id: GO:0046476 @@ -84222,8 +83719,8 @@ is_a: GO:0006677 ! glycosylceramide metabolic process is_a: GO:0006688 ! glycosphingolipid biosynthetic process is_a: GO:0046513 ! ceramide biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:62941 ! glycosylceramide -relationship: has_primary_output CHEBI:62941 ! glycosylceramide +intersection_of: RO:0004008 CHEBI:62941 ! has primary output glycosylceramide +relationship: RO:0004008 CHEBI:62941 ! has primary output glycosylceramide [Term] id: GO:0046477 @@ -84237,8 +83734,8 @@ is_a: GO:0006677 ! glycosylceramide metabolic process is_a: GO:0046479 ! glycosphingolipid catabolic process is_a: GO:0046514 ! ceramide catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:62941 ! glycosylceramide -relationship: has_primary_input CHEBI:62941 ! glycosylceramide +intersection_of: RO:0004009 CHEBI:62941 ! has primary input glycosylceramide +relationship: RO:0004009 CHEBI:62941 ! has primary input glycosylceramide [Term] id: GO:0046479 @@ -84252,8 +83749,8 @@ is_a: GO:0006687 ! glycosphingolipid metabolic process is_a: GO:0019377 ! glycolipid catabolic process is_a: GO:0030149 ! sphingolipid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:24402 ! glycosphingolipid -relationship: has_primary_input CHEBI:24402 ! glycosphingolipid +intersection_of: RO:0004009 CHEBI:24402 ! has primary input glycosphingolipid +relationship: RO:0004009 CHEBI:24402 ! has primary input glycosphingolipid [Term] id: GO:0046513 @@ -84268,8 +83765,8 @@ is_a: GO:0006672 ! ceramide metabolic process is_a: GO:0030148 ! sphingolipid biosynthetic process is_a: GO:0043604 ! amide biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:17761 ! ceramide -relationship: has_primary_output CHEBI:17761 ! ceramide +intersection_of: RO:0004008 CHEBI:17761 ! has primary output ceramide +relationship: RO:0004008 CHEBI:17761 ! has primary output ceramide [Term] id: GO:0046514 @@ -84282,8 +83779,8 @@ synonym: "ceramide degradation" EXACT [] is_a: GO:0006672 ! ceramide metabolic process is_a: GO:0030149 ! sphingolipid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:17761 ! ceramide -relationship: has_primary_input CHEBI:17761 ! ceramide +intersection_of: RO:0004009 CHEBI:17761 ! has primary input ceramide +relationship: RO:0004009 CHEBI:17761 ! has primary input ceramide [Term] id: GO:0046530 @@ -84293,8 +83790,8 @@ alt_id: GO:0007467 def: "The specialization of organization of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light. An example of this process is found in Drosophila melanogaster." [GOC:ai, ISBN:0198506732] is_a: GO:0030182 ! neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000210 ! photoreceptor cell -relationship: results_in_acquisition_of_features_of CL:0000210 ! photoreceptor cell +intersection_of: RO:0002315 CL:0000210 ! results in acquisition of features of photoreceptor cell +relationship: RO:0002315 CL:0000210 ! results in acquisition of features of photoreceptor cell [Term] id: GO:0046532 @@ -84305,8 +83802,8 @@ def: "Any process that modulates the frequency, rate or extent of photoreceptor synonym: "regulation of photoreceptor differentiation" EXACT [] is_a: GO:0045664 ! regulation of neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0046530 ! photoreceptor cell differentiation -relationship: regulates GO:0046530 ! photoreceptor cell differentiation +intersection_of: RO:0002211 GO:0046530 ! regulates (processual) photoreceptor cell differentiation +relationship: RO:0002211 GO:0046530 ! regulates (processual) photoreceptor cell differentiation [Term] id: GO:0046533 @@ -84327,8 +83824,8 @@ is_a: GO:0045665 ! negative regulation of neuron differentiation is_a: GO:0046532 ! regulation of photoreceptor cell differentiation is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0046530 ! photoreceptor cell differentiation -relationship: negatively_regulates GO:0046530 ! photoreceptor cell differentiation +intersection_of: RO:0002212 GO:0046530 ! negatively regulates photoreceptor cell differentiation +relationship: RO:0002212 GO:0046530 ! negatively regulates photoreceptor cell differentiation [Term] id: GO:0046534 @@ -84351,8 +83848,8 @@ is_a: GO:0045666 ! positive regulation of neuron differentiation is_a: GO:0046532 ! regulation of photoreceptor cell differentiation is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0046530 ! photoreceptor cell differentiation -relationship: positively_regulates GO:0046530 ! photoreceptor cell differentiation +intersection_of: RO:0002213 GO:0046530 ! positively regulates photoreceptor cell differentiation +relationship: RO:0002213 GO:0046530 ! positively regulates photoreceptor cell differentiation [Term] id: GO:0046541 @@ -84388,9 +83885,9 @@ namespace: biological_process def: "Development of a rod cell, one of the sensory cells in the eye that reacts to the presence of light. Rod cells contain the photopigment rhodopsin or porphyropsin and are responsible for vision in dim light." [ISBN:0198506732] is_a: GO:0042462 ! eye photoreceptor cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000604 ! retinal rod cell +intersection_of: RO:0002296 CL:0000604 ! results in development of retinal rod cell relationship: part_of GO:0060221 ! retinal rod cell differentiation -relationship: results_in_development_of CL:0000604 ! retinal rod cell +relationship: RO:0002296 CL:0000604 ! results in development of retinal rod cell [Term] id: GO:0046549 @@ -84399,9 +83896,9 @@ namespace: biological_process def: "Development of a cone cell, one of the sensory cells in the eye that reacts to the presence of light. Cone cells contain the photopigment iodopsin or cyanopsin and are responsible for photopic (daylight) vision." [ISBN:0198506732] is_a: GO:0042462 ! eye photoreceptor cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000573 ! retinal cone cell +intersection_of: RO:0002296 CL:0000573 ! results in development of retinal cone cell relationship: part_of GO:0042670 ! retinal cone cell differentiation -relationship: results_in_development_of CL:0000573 ! retinal cone cell +relationship: RO:0002296 CL:0000573 ! results in development of retinal cone cell [Term] id: GO:0046620 @@ -84411,8 +83908,8 @@ def: "Any process that modulates the frequency, rate or extent of growth of an o is_a: GO:0048638 ! regulation of developmental growth is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035265 ! organ growth -relationship: regulates GO:0035265 ! organ growth +intersection_of: RO:0002211 GO:0035265 ! regulates (processual) organ growth +relationship: RO:0002211 GO:0035265 ! regulates (processual) organ growth [Term] id: GO:0046621 @@ -84423,8 +83920,8 @@ is_a: GO:0046620 ! regulation of organ growth is_a: GO:0048640 ! negative regulation of developmental growth is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035265 ! organ growth -relationship: negatively_regulates GO:0035265 ! organ growth +intersection_of: RO:0002212 GO:0035265 ! negatively regulates organ growth +relationship: RO:0002212 GO:0035265 ! negatively regulates organ growth [Term] id: GO:0046622 @@ -84435,8 +83932,8 @@ is_a: GO:0046620 ! regulation of organ growth is_a: GO:0048639 ! positive regulation of developmental growth is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035265 ! organ growth -relationship: positively_regulates GO:0035265 ! organ growth +intersection_of: RO:0002213 GO:0035265 ! positively regulates organ growth +relationship: RO:0002213 GO:0035265 ! positively regulates organ growth [Term] id: GO:0046624 @@ -84447,8 +83944,8 @@ xref: Reactome:R-HSA-9695890 "SPNS2,MFSD2B transport S1P from cytosol to extrace xref: Reactome:R-HSA-9843721 "ABCC1,ABCG2 transport C18-S1P to extracellular region" is_a: GO:0005319 ! lipid transporter activity intersection_of: GO:0005215 ! transporter activity -intersection_of: has_primary_input CHEBI:26739 ! sphingolipid -relationship: has_primary_input CHEBI:26739 ! sphingolipid +intersection_of: RO:0004009 CHEBI:26739 ! has primary input sphingolipid +relationship: RO:0004009 CHEBI:26739 ! has primary input sphingolipid [Term] id: GO:0046625 @@ -84457,8 +83954,8 @@ namespace: molecular_function def: "Binding to a sphingolipid, a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid)." [ISBN:0198506732] is_a: GO:0008289 ! lipid binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:26739 ! sphingolipid -relationship: has_primary_input CHEBI:26739 ! sphingolipid +intersection_of: RO:0004009 CHEBI:26739 ! has primary input sphingolipid +relationship: RO:0004009 CHEBI:26739 ! has primary input sphingolipid [Term] id: GO:0046626 @@ -84468,10 +83965,10 @@ def: "Any process that modulates the frequency, rate or extent of insulin recept synonym: "regulation of insulin receptor signalling pathway" EXACT [] is_a: GO:0009966 ! regulation of signal transduction intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008286 ! insulin receptor signaling pathway +intersection_of: RO:0002211 GO:0008286 ! regulates (processual) insulin receptor signaling pathway relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa -relationship: regulates GO:0008286 ! insulin receptor signaling pathway +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa +relationship: RO:0002211 GO:0008286 ! regulates (processual) insulin receptor signaling pathway [Term] id: GO:0046627 @@ -84487,9 +83984,9 @@ is_a: GO:0009968 ! negative regulation of signal transduction is_a: GO:0046626 ! regulation of insulin receptor signaling pathway is_a: GO:1900077 ! negative regulation of cellular response to insulin stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008286 ! insulin receptor signaling pathway -relationship: negatively_regulates GO:0008286 ! insulin receptor signaling pathway -relationship: negatively_regulates GO:0032869 ! cellular response to insulin stimulus +intersection_of: RO:0002212 GO:0008286 ! negatively regulates insulin receptor signaling pathway +relationship: RO:0002212 GO:0008286 ! negatively regulates insulin receptor signaling pathway +relationship: RO:0002212 GO:0032869 ! negatively regulates cellular response to insulin stimulus [Term] id: GO:0046628 @@ -84506,9 +84003,9 @@ is_a: GO:0009967 ! positive regulation of signal transduction is_a: GO:0046626 ! regulation of insulin receptor signaling pathway is_a: GO:1900078 ! positive regulation of cellular response to insulin stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008286 ! insulin receptor signaling pathway -relationship: positively_regulates GO:0008286 ! insulin receptor signaling pathway -relationship: positively_regulates GO:0032869 ! cellular response to insulin stimulus +intersection_of: RO:0002213 GO:0008286 ! positively regulates insulin receptor signaling pathway +relationship: RO:0002213 GO:0008286 ! positively regulates insulin receptor signaling pathway +relationship: RO:0002213 GO:0032869 ! positively regulates cellular response to insulin stimulus [Term] id: GO:0046649 @@ -84517,8 +84014,8 @@ namespace: biological_process def: "A change in morphology and behavior of a lymphocyte resulting from exposure to a specific antigen, mitogen, cytokine, chemokine, cellular ligand, or soluble factor." [GOC:mgi_curators, ISBN:0781735149] is_a: GO:0045321 ! leukocyte activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000542 ! lymphocyte -relationship: has_primary_input CL:0000542 ! lymphocyte +intersection_of: RO:0004009 CL:0000542 ! has primary input lymphocyte +relationship: RO:0004009 CL:0000542 ! has primary input lymphocyte [Term] id: GO:0046651 @@ -84528,8 +84025,8 @@ def: "The expansion of a lymphocyte population by cell division." [GOC:ai] is_a: GO:0032943 ! mononuclear cell proliferation is_a: GO:0046649 ! lymphocyte activation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000542 ! lymphocyte -relationship: acts_on_population_of CL:0000542 ! lymphocyte +intersection_of: RO:0012003 CL:0000542 ! acts on population of lymphocyte +relationship: RO:0012003 CL:0000542 ! acts on population of lymphocyte [Term] id: GO:0046660 @@ -84567,9 +84064,9 @@ namespace: biological_process def: "Programmed cell death that occurs in the retina to remove excess cells between ommatidia, thus resulting in a hexagonal lattice, precise with respect to cell number and position surrounding each ommatidium." [PMID:12006672] is_a: GO:0046666 ! retinal cell programmed cell death intersection_of: GO:0046666 ! retinal cell programmed cell death -intersection_of: results_in_maturation_of UBERON:0000018 ! compound eye +intersection_of: RO:0002299 UBERON:0000018 ! results in maturation of compound eye relationship: part_of GO:0001745 ! compound eye morphogenesis -relationship: results_in_maturation_of UBERON:0000018 ! compound eye +relationship: RO:0002299 UBERON:0000018 ! results in maturation of compound eye [Term] id: GO:0046668 @@ -84580,8 +84077,8 @@ synonym: "regulation of retinal programmed cell death" EXACT [GOC:tb] is_a: GO:0043067 ! regulation of programmed cell death is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0046666 ! retinal cell programmed cell death -relationship: regulates GO:0046666 ! retinal cell programmed cell death +intersection_of: RO:0002211 GO:0046666 ! regulates (processual) retinal cell programmed cell death +relationship: RO:0002211 GO:0046666 ! regulates (processual) retinal cell programmed cell death [Term] id: GO:0046669 @@ -84591,8 +84088,8 @@ def: "Any process that modulates the frequency, rate or extent of programmed cel synonym: "regulation of retinal cell programmed cell death" BROAD [] is_a: GO:0046668 ! regulation of retinal cell programmed cell death intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0046667 ! compound eye retinal cell programmed cell death -relationship: regulates GO:0046667 ! compound eye retinal cell programmed cell death +intersection_of: RO:0002211 GO:0046667 ! regulates (processual) compound eye retinal cell programmed cell death +relationship: RO:0002211 GO:0046667 ! regulates (processual) compound eye retinal cell programmed cell death [Term] id: GO:0046670 @@ -84609,8 +84106,8 @@ is_a: GO:0043068 ! positive regulation of programmed cell death is_a: GO:0046668 ! regulation of retinal cell programmed cell death is_a: GO:0051094 ! positive regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0046666 ! retinal cell programmed cell death -relationship: positively_regulates GO:0046666 ! retinal cell programmed cell death +intersection_of: RO:0002213 GO:0046666 ! positively regulates retinal cell programmed cell death +relationship: RO:0002213 GO:0046666 ! positively regulates retinal cell programmed cell death [Term] id: GO:0046671 @@ -84626,8 +84123,8 @@ is_a: GO:0043069 ! negative regulation of programmed cell death is_a: GO:0046668 ! regulation of retinal cell programmed cell death is_a: GO:0051093 ! negative regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0046666 ! retinal cell programmed cell death -relationship: negatively_regulates GO:0046666 ! retinal cell programmed cell death +intersection_of: RO:0002212 GO:0046666 ! negatively regulates retinal cell programmed cell death +relationship: RO:0002212 GO:0046666 ! negatively regulates retinal cell programmed cell death [Term] id: GO:0046672 @@ -84643,8 +84140,8 @@ synonym: "upregulation of retinal cell programmed cell death" BROAD [] is_a: GO:0046669 ! regulation of compound eye retinal cell programmed cell death is_a: GO:0046670 ! positive regulation of retinal cell programmed cell death intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0046667 ! compound eye retinal cell programmed cell death -relationship: positively_regulates GO:0046667 ! compound eye retinal cell programmed cell death +intersection_of: RO:0002213 GO:0046667 ! positively regulates compound eye retinal cell programmed cell death +relationship: RO:0002213 GO:0046667 ! positively regulates compound eye retinal cell programmed cell death [Term] id: GO:0046673 @@ -84660,8 +84157,8 @@ synonym: "negative regulation of retinal cell programmed cell death" BROAD [] is_a: GO:0046669 ! regulation of compound eye retinal cell programmed cell death is_a: GO:0046671 ! negative regulation of retinal cell programmed cell death intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0046667 ! compound eye retinal cell programmed cell death -relationship: negatively_regulates GO:0046667 ! compound eye retinal cell programmed cell death +intersection_of: RO:0002212 GO:0046667 ! negatively regulates compound eye retinal cell programmed cell death +relationship: RO:0002212 GO:0046667 ! negatively regulates compound eye retinal cell programmed cell death [Term] id: GO:0046676 @@ -84676,8 +84173,8 @@ is_a: GO:0050709 ! negative regulation of protein secretion is_a: GO:0050796 ! regulation of insulin secretion is_a: GO:0090278 ! negative regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030073 ! insulin secretion -relationship: negatively_regulates GO:0030073 ! insulin secretion +intersection_of: RO:0002212 GO:0030073 ! negatively regulates insulin secretion +relationship: RO:0002212 GO:0030073 ! negatively regulates insulin secretion [Term] id: GO:0046681 @@ -84686,12 +84183,12 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbamate stimulus. Carbamates are a group of insecticides and parasiticides that act by inhibiting cholinesterase." [ISBN:0721662544] synonym: "carbamate resistance" RELATED [] synonym: "carbamate susceptibility/resistance" RELATED [] -is_a: GO:0010243 ! response to organonitrogen compound is_a: GO:0017085 ! response to insecticide +is_a: GO:1901698 ! response to nitrogen compound is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:13941 ! carbamate -relationship: has_primary_input CHEBI:13941 ! carbamate +intersection_of: RO:0004009 CHEBI:13941 ! has primary input carbamate +relationship: RO:0004009 CHEBI:13941 ! has primary input carbamate [Term] id: GO:0046683 @@ -84702,8 +84199,8 @@ synonym: "organophosphorus resistance" RELATED [] synonym: "organophosphorus susceptibility/resistance" RELATED [] is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:25710 ! organophosphorus compound -relationship: has_primary_input CHEBI:25710 ! organophosphorus compound +intersection_of: RO:0004009 CHEBI:25710 ! has primary input organophosphorus compound +relationship: RO:0004009 CHEBI:25710 ! has primary input organophosphorus compound [Term] id: GO:0046692 @@ -84725,9 +84222,9 @@ synonym: "muscle fiber maintenance" NARROW [GOC:dph, GOC:tb] synonym: "muscle homeostasis" RELATED [GOC:dph] is_a: GO:0019725 ! cellular homeostasis intersection_of: GO:0019725 ! cellular homeostasis -intersection_of: occurs_in CL:0000187 ! muscle cell +intersection_of: BFO:0000066 CL:0000187 ! occurs in muscle cell +relationship: BFO:0000066 CL:0000187 ! occurs in muscle cell relationship: never_in_taxon NCBITaxon:4751 ! Fungi -relationship: occurs_in CL:0000187 ! muscle cell property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24218" xsd:anyURI [Term] @@ -84746,8 +84243,8 @@ synonym: "formate secretion" EXACT [] is_a: GO:0015724 ! formate transport is_a: GO:0046717 ! acid secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:15740 ! formate -relationship: has_primary_input CHEBI:15740 ! formate +intersection_of: RO:0004009 CHEBI:15740 ! has primary input formate +relationship: RO:0004009 CHEBI:15740 ! has primary input formate [Term] id: GO:0046785 @@ -84760,8 +84257,8 @@ is_a: GO:0031109 ! microtubule polymerization or depolymerization is_a: GO:0051258 ! protein polymerization is_a: GO:0097435 ! supramolecular fiber organization intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0005874 ! microtubule -relationship: results_in_assembly_of GO:0005874 ! microtubule +intersection_of: RO:0002588 GO:0005874 ! results in assembly of microtubule +relationship: RO:0002588 GO:0005874 ! results in assembly of microtubule relationship: starts_with GO:0007020 ! microtubule nucleation [Term] @@ -84771,8 +84268,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the directed movement of substances between the nucleus and the cytoplasm." [GOC:bf] is_a: GO:0032386 ! regulation of intracellular transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006913 ! nucleocytoplasmic transport -relationship: regulates GO:0006913 ! nucleocytoplasmic transport +intersection_of: RO:0002211 GO:0006913 ! regulates (processual) nucleocytoplasmic transport +relationship: RO:0002211 GO:0006913 ! regulates (processual) nucleocytoplasmic transport [Term] id: GO:0046823 @@ -84786,8 +84283,8 @@ synonym: "inhibition of nucleocytoplasmic transport" NARROW [] is_a: GO:0032387 ! negative regulation of intracellular transport is_a: GO:0046822 ! regulation of nucleocytoplasmic transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006913 ! nucleocytoplasmic transport -relationship: negatively_regulates GO:0006913 ! nucleocytoplasmic transport +intersection_of: RO:0002212 GO:0006913 ! negatively regulates nucleocytoplasmic transport +relationship: RO:0002212 GO:0006913 ! negatively regulates nucleocytoplasmic transport [Term] id: GO:0046824 @@ -84802,8 +84299,8 @@ synonym: "upregulation of nucleocytoplasmic transport" EXACT [] is_a: GO:0032388 ! positive regulation of intracellular transport is_a: GO:0046822 ! regulation of nucleocytoplasmic transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006913 ! nucleocytoplasmic transport -relationship: positively_regulates GO:0006913 ! nucleocytoplasmic transport +intersection_of: RO:0002213 GO:0006913 ! positively regulates nucleocytoplasmic transport +relationship: RO:0002213 GO:0006913 ! positively regulates nucleocytoplasmic transport [Term] id: GO:0046825 @@ -84817,8 +84314,8 @@ synonym: "regulation of protein-nucleus export" EXACT [] is_a: GO:0033157 ! regulation of intracellular protein transport is_a: GO:0046822 ! regulation of nucleocytoplasmic transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006611 ! protein export from nucleus -relationship: regulates GO:0006611 ! protein export from nucleus +intersection_of: RO:0002211 GO:0006611 ! regulates (processual) protein export from nucleus +relationship: RO:0002211 GO:0006611 ! regulates (processual) protein export from nucleus [Term] id: GO:0046826 @@ -84838,8 +84335,8 @@ is_a: GO:0046825 ! regulation of protein export from nucleus is_a: GO:0051457 ! maintenance of protein location in nucleus is_a: GO:0090317 ! negative regulation of intracellular protein transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006611 ! protein export from nucleus -relationship: negatively_regulates GO:0006611 ! protein export from nucleus +intersection_of: RO:0002212 GO:0006611 ! negatively regulates protein export from nucleus +relationship: RO:0002212 GO:0006611 ! negatively regulates protein export from nucleus [Term] id: GO:0046827 @@ -84859,8 +84356,8 @@ is_a: GO:0046824 ! positive regulation of nucleocytoplasmic transport is_a: GO:0046825 ! regulation of protein export from nucleus is_a: GO:0090316 ! positive regulation of intracellular protein transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006611 ! protein export from nucleus -relationship: positively_regulates GO:0006611 ! protein export from nucleus +intersection_of: RO:0002213 GO:0006611 ! positively regulates protein export from nucleus +relationship: RO:0002213 GO:0006611 ! positively regulates protein export from nucleus [Term] id: GO:0046828 @@ -84873,8 +84370,8 @@ synonym: "regulation of RNA-nucleus import" EXACT [] is_a: GO:0032239 ! regulation of nucleobase-containing compound transport is_a: GO:0046822 ! regulation of nucleocytoplasmic transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006404 ! RNA import into nucleus -relationship: regulates GO:0006404 ! RNA import into nucleus +intersection_of: RO:0002211 GO:0006404 ! regulates (processual) RNA import into nucleus +relationship: RO:0002211 GO:0006404 ! regulates (processual) RNA import into nucleus [Term] id: GO:0046829 @@ -84892,8 +84389,8 @@ is_a: GO:0032240 ! negative regulation of nucleobase-containing compound transpo is_a: GO:0046823 ! negative regulation of nucleocytoplasmic transport is_a: GO:0046828 ! regulation of RNA import into nucleus intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006404 ! RNA import into nucleus -relationship: negatively_regulates GO:0006404 ! RNA import into nucleus +intersection_of: RO:0002212 GO:0006404 ! negatively regulates RNA import into nucleus +relationship: RO:0002212 GO:0006404 ! negatively regulates RNA import into nucleus [Term] id: GO:0046830 @@ -84912,8 +84409,8 @@ is_a: GO:0032241 ! positive regulation of nucleobase-containing compound transpo is_a: GO:0046824 ! positive regulation of nucleocytoplasmic transport is_a: GO:0046828 ! regulation of RNA import into nucleus intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006404 ! RNA import into nucleus -relationship: positively_regulates GO:0006404 ! RNA import into nucleus +intersection_of: RO:0002213 GO:0006404 ! positively regulates RNA import into nucleus +relationship: RO:0002213 GO:0006404 ! positively regulates RNA import into nucleus [Term] id: GO:0046831 @@ -84927,8 +84424,8 @@ synonym: "regulation of RNA-nucleus export" EXACT [] is_a: GO:0032239 ! regulation of nucleobase-containing compound transport is_a: GO:0046822 ! regulation of nucleocytoplasmic transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006405 ! RNA export from nucleus -relationship: regulates GO:0006405 ! RNA export from nucleus +intersection_of: RO:0002211 GO:0006405 ! regulates (processual) RNA export from nucleus +relationship: RO:0002211 GO:0006405 ! regulates (processual) RNA export from nucleus [Term] id: GO:0046832 @@ -84947,8 +84444,8 @@ is_a: GO:0032240 ! negative regulation of nucleobase-containing compound transpo is_a: GO:0046823 ! negative regulation of nucleocytoplasmic transport is_a: GO:0046831 ! regulation of RNA export from nucleus intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006405 ! RNA export from nucleus -relationship: negatively_regulates GO:0006405 ! RNA export from nucleus +intersection_of: RO:0002212 GO:0006405 ! negatively regulates RNA export from nucleus +relationship: RO:0002212 GO:0006405 ! negatively regulates RNA export from nucleus [Term] id: GO:0046833 @@ -84968,8 +84465,8 @@ is_a: GO:0032241 ! positive regulation of nucleobase-containing compound transpo is_a: GO:0046824 ! positive regulation of nucleocytoplasmic transport is_a: GO:0046831 ! regulation of RNA export from nucleus intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006405 ! RNA export from nucleus -relationship: positively_regulates GO:0006405 ! RNA export from nucleus +intersection_of: RO:0002213 GO:0006405 ! positively regulates RNA export from nucleus +relationship: RO:0002213 GO:0006405 ! positively regulates RNA export from nucleus [Term] id: GO:0046836 @@ -84979,8 +84476,8 @@ def: "The directed movement of glycolipids, compounds containing (usually) 1-4 l is_a: GO:0006869 ! lipid transport is_a: GO:1901264 ! carbohydrate derivative transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:33563 ! glycolipid -relationship: has_primary_input CHEBI:33563 ! glycolipid +intersection_of: RO:0004009 CHEBI:33563 ! has primary input glycolipid +relationship: RO:0004009 CHEBI:33563 ! has primary input glycolipid [Term] id: GO:0046848 @@ -84990,8 +84487,8 @@ def: "Binding to hydroxyapatite, the calcium phosphate mineral of formula Ca10(P synonym: "hydroxylapatite binding" EXACT [GOC:vk] is_a: GO:0036094 ! small molecule binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:52255 ! hydroxylapatite -relationship: has_primary_input CHEBI:52255 ! hydroxylapatite +intersection_of: RO:0004009 CHEBI:52255 ! has primary input hydroxylapatite +relationship: RO:0004009 CHEBI:52255 ! has primary input hydroxylapatite property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/21211" xsd:anyURI [Term] @@ -85011,12 +84508,12 @@ def: "Any process that modulates the frequency, rate or extent of bone remodelin synonym: "regulation of bone remodelling" EXACT [] is_a: GO:0034103 ! regulation of tissue remodeling intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0046849 ! bone remodeling +intersection_of: RO:0002211 GO:0046849 ! regulates (processual) bone remodeling relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata -relationship: regulates GO:0046849 ! bone remodeling +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata +relationship: RO:0002211 GO:0046849 ! regulates (processual) bone remodeling [Term] id: GO:0046851 @@ -85031,8 +84528,8 @@ synonym: "negative regulation of bone remodelling" EXACT [] is_a: GO:0034104 ! negative regulation of tissue remodeling is_a: GO:0046850 ! regulation of bone remodeling intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0046849 ! bone remodeling -relationship: negatively_regulates GO:0046849 ! bone remodeling +intersection_of: RO:0002212 GO:0046849 ! negatively regulates bone remodeling +relationship: RO:0002212 GO:0046849 ! negatively regulates bone remodeling [Term] id: GO:0046852 @@ -85048,8 +84545,8 @@ synonym: "upregulation of bone remodeling" EXACT [] is_a: GO:0034105 ! positive regulation of tissue remodeling is_a: GO:0046850 ! regulation of bone remodeling intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0046849 ! bone remodeling -relationship: positively_regulates GO:0046849 ! bone remodeling +intersection_of: RO:0002213 GO:0046849 ! positively regulates bone remodeling +relationship: RO:0002213 GO:0046849 ! positively regulates bone remodeling [Term] id: GO:0046864 @@ -85059,8 +84556,8 @@ def: "The directed movement of isoprenoids into, out of or within a cell, or bet subset: goslim_pir is_a: GO:0006869 ! lipid transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:24913 ! isoprenoid -relationship: has_primary_input CHEBI:24913 ! isoprenoid +intersection_of: RO:0004009 CHEBI:24913 ! has primary input isoprenoid +relationship: RO:0004009 CHEBI:24913 ! has primary input isoprenoid [Term] id: GO:0046865 @@ -85069,8 +84566,8 @@ namespace: biological_process def: "The directed movement of terpenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Terpenoids are a class of compounds characterized by an isoprenoid chemical structure and include derivatives with various functional groups." [GOC:ai] is_a: GO:0046864 ! isoprenoid transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:26873 ! terpenoid -relationship: has_primary_input CHEBI:26873 ! terpenoid +intersection_of: RO:0004009 CHEBI:26873 ! has primary input terpenoid +relationship: RO:0004009 CHEBI:26873 ! has primary input terpenoid [Term] id: GO:0046866 @@ -85079,8 +84576,8 @@ namespace: biological_process def: "The directed movement of tetraterpenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Tetraterpenoids are terpenoids with eight isoprene units." [GOC:ai] is_a: GO:0046865 ! terpenoid transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:26935 ! tetraterpenoid -relationship: has_primary_input CHEBI:26935 ! tetraterpenoid +intersection_of: RO:0004009 CHEBI:26935 ! has primary input tetraterpenoid +relationship: RO:0004009 CHEBI:26935 ! has primary input tetraterpenoid [Term] id: GO:0046867 @@ -85089,8 +84586,8 @@ namespace: biological_process def: "The directed movement of carotenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carotenoids are tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail." [GOC:ai] is_a: GO:0046866 ! tetraterpenoid transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:23044 ! carotenoid -relationship: has_primary_input CHEBI:23044 ! carotenoid +intersection_of: RO:0004009 CHEBI:23044 ! has primary input carotenoid +relationship: RO:0004009 CHEBI:23044 ! has primary input carotenoid [Term] id: GO:0046872 @@ -85105,8 +84602,8 @@ synonym: "heavy metal binding" NARROW [] synonym: "metal binding" EXACT [] is_a: GO:0043169 ! cation binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:25213 ! metal cation -relationship: has_primary_input CHEBI:25213 ! metal cation +intersection_of: RO:0004009 CHEBI:25213 ! has primary input metal cation +relationship: RO:0004009 CHEBI:25213 ! has primary input metal cation [Term] id: GO:0046873 @@ -85122,9 +84619,9 @@ synonym: "low affinity metal ion uptake transporter activity" NARROW [] is_a: GO:0008324 ! monoatomic cation transmembrane transporter activity is_a: GO:0022890 ! inorganic cation transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:25213 ! metal cation -relationship: has_primary_input CHEBI:25213 ! metal cation +intersection_of: RO:0004009 CHEBI:25213 ! has primary input metal cation relationship: part_of GO:0030001 ! metal ion transport +relationship: RO:0004009 CHEBI:25213 ! has primary input metal cation [Term] id: GO:0046877 @@ -85135,8 +84632,8 @@ is_a: GO:0044058 ! regulation of digestive system process is_a: GO:0050878 ! regulation of body fluid levels is_a: GO:0051046 ! regulation of secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0046541 ! saliva secretion -relationship: regulates GO:0046541 ! saliva secretion +intersection_of: RO:0002211 GO:0046541 ! regulates (processual) saliva secretion +relationship: RO:0002211 GO:0046541 ! regulates (processual) saliva secretion [Term] id: GO:0046878 @@ -85152,8 +84649,8 @@ is_a: GO:0046877 ! regulation of saliva secretion is_a: GO:0051047 ! positive regulation of secretion is_a: GO:0060456 ! positive regulation of digestive system process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0046541 ! saliva secretion -relationship: positively_regulates GO:0046541 ! saliva secretion +intersection_of: RO:0002213 GO:0046541 ! positively regulates saliva secretion +relationship: RO:0002213 GO:0046541 ! positively regulates saliva secretion [Term] id: GO:0046879 @@ -85173,8 +84670,8 @@ is_a: GO:0010817 ! regulation of hormone levels is_a: GO:0023051 ! regulation of signaling is_a: GO:1903530 ! regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0046879 ! hormone secretion -relationship: regulates GO:0046879 ! hormone secretion +intersection_of: RO:0002211 GO:0046879 ! regulates (processual) hormone secretion +relationship: RO:0002211 GO:0046879 ! regulates (processual) hormone secretion [Term] id: GO:0046885 @@ -85185,11 +84682,11 @@ synonym: "regulation of hormone anabolism" EXACT [] synonym: "regulation of hormone biosynthesis" EXACT [] synonym: "regulation of hormone formation" EXACT [] synonym: "regulation of hormone synthesis" EXACT [] -is_a: GO:0031326 ! regulation of cellular biosynthetic process +is_a: GO:0009889 ! regulation of biosynthetic process is_a: GO:0032350 ! regulation of hormone metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042446 ! hormone biosynthetic process -relationship: regulates GO:0042446 ! hormone biosynthetic process +intersection_of: RO:0002211 GO:0042446 ! regulates (processual) hormone biosynthetic process +relationship: RO:0002211 GO:0042446 ! regulates (processual) hormone biosynthetic process [Term] id: GO:0046886 @@ -85205,12 +84702,12 @@ synonym: "stimulation of hormone biosynthetic process" NARROW [] synonym: "up regulation of hormone biosynthetic process" EXACT [] synonym: "up-regulation of hormone biosynthetic process" EXACT [] synonym: "upregulation of hormone biosynthetic process" EXACT [] -is_a: GO:0031328 ! positive regulation of cellular biosynthetic process +is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:0032352 ! positive regulation of hormone metabolic process is_a: GO:0046885 ! regulation of hormone biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042446 ! hormone biosynthetic process -relationship: positively_regulates GO:0042446 ! hormone biosynthetic process +intersection_of: RO:0002213 GO:0042446 ! positively regulates hormone biosynthetic process +relationship: RO:0002213 GO:0042446 ! positively regulates hormone biosynthetic process [Term] id: GO:0046887 @@ -85227,8 +84724,8 @@ is_a: GO:0023056 ! positive regulation of signaling is_a: GO:0046883 ! regulation of hormone secretion is_a: GO:1903532 ! positive regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0046879 ! hormone secretion -relationship: positively_regulates GO:0046879 ! hormone secretion +intersection_of: RO:0002213 GO:0046879 ! positively regulates hormone secretion +relationship: RO:0002213 GO:0046879 ! positively regulates hormone secretion [Term] id: GO:0046888 @@ -85244,8 +84741,8 @@ is_a: GO:0023057 ! negative regulation of signaling is_a: GO:0046883 ! regulation of hormone secretion is_a: GO:1903531 ! negative regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0046879 ! hormone secretion -relationship: negatively_regulates GO:0046879 ! hormone secretion +intersection_of: RO:0002212 GO:0046879 ! negatively regulates hormone secretion +relationship: RO:0002212 GO:0046879 ! negatively regulates hormone secretion [Term] id: GO:0046889 @@ -85266,8 +84763,8 @@ is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:0045834 ! positive regulation of lipid metabolic process is_a: GO:0046890 ! regulation of lipid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008610 ! lipid biosynthetic process -relationship: positively_regulates GO:0008610 ! lipid biosynthetic process +intersection_of: RO:0002213 GO:0008610 ! positively regulates lipid biosynthetic process +relationship: RO:0002213 GO:0008610 ! positively regulates lipid biosynthetic process [Term] id: GO:0046890 @@ -85282,8 +84779,8 @@ synonym: "regulation of lipogenesis" EXACT [GOC:sl] is_a: GO:0009889 ! regulation of biosynthetic process is_a: GO:0019216 ! regulation of lipid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008610 ! lipid biosynthetic process -relationship: regulates GO:0008610 ! lipid biosynthetic process +intersection_of: RO:0002211 GO:0008610 ! regulates (processual) lipid biosynthetic process +relationship: RO:0002211 GO:0008610 ! regulates (processual) lipid biosynthetic process [Term] id: GO:0046903 @@ -85303,8 +84800,8 @@ subset: goslim_pir synonym: "porphyrin binding" NARROW [] is_a: GO:0097159 ! organic cyclic compound binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:26932 ! tetrapyrrole -relationship: has_primary_input CHEBI:26932 ! tetrapyrrole +intersection_of: RO:0004009 CHEBI:26932 ! has primary input tetrapyrrole +relationship: RO:0004009 CHEBI:26932 ! has primary input tetrapyrrole [Term] id: GO:0046907 @@ -85318,8 +84815,8 @@ is_a: GO:0006810 ! transport is_a: GO:0051641 ! cellular localization is_a: GO:0051649 ! establishment of localization in cell intersection_of: GO:0006810 ! transport -intersection_of: occurs_in GO:0005622 ! intracellular anatomical structure -relationship: occurs_in GO:0005622 ! intracellular anatomical structure +intersection_of: BFO:0000066 GO:0005622 ! occurs in intracellular anatomical structure +relationship: BFO:0000066 GO:0005622 ! occurs in intracellular anatomical structure created_by: jl creation_date: 2013-12-18T14:04:50Z @@ -85330,8 +84827,8 @@ namespace: molecular_function def: "Binding to a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver." [ISBN:0198506732] is_a: GO:0046872 ! metal ion binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:33515 ! transition element cation -relationship: has_primary_input CHEBI:33515 ! transition element cation +intersection_of: RO:0004009 CHEBI:33515 ! has primary input transition element cation +relationship: RO:0004009 CHEBI:33515 ! has primary input transition element cation [Term] id: GO:0046915 @@ -85340,9 +84837,9 @@ namespace: molecular_function def: "Enables the transfer of transition metal ions from one side of a membrane to the other. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver." [ISBN:0198506732] is_a: GO:0046873 ! metal ion transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:33515 ! transition element cation -relationship: has_primary_input CHEBI:33515 ! transition element cation +intersection_of: RO:0004009 CHEBI:33515 ! has primary input transition element cation relationship: part_of GO:0000041 ! transition metal ion transport +relationship: RO:0004009 CHEBI:33515 ! has primary input transition element cation [Term] id: GO:0046928 @@ -85353,9 +84850,9 @@ is_a: GO:0050804 ! modulation of chemical synaptic transmission is_a: GO:0051588 ! regulation of neurotransmitter transport is_a: GO:1903530 ! regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007269 ! neurotransmitter secretion -relationship: regulates GO:0007268 ! chemical synaptic transmission -relationship: regulates GO:0007269 ! neurotransmitter secretion +intersection_of: RO:0002211 GO:0007269 ! regulates (processual) neurotransmitter secretion +relationship: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +relationship: RO:0002211 GO:0007269 ! regulates (processual) neurotransmitter secretion [Term] id: GO:0046929 @@ -85371,8 +84868,8 @@ is_a: GO:0046928 ! regulation of neurotransmitter secretion is_a: GO:0051589 ! negative regulation of neurotransmitter transport is_a: GO:1903531 ! negative regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007269 ! neurotransmitter secretion -relationship: negatively_regulates GO:0007269 ! neurotransmitter secretion +intersection_of: RO:0002212 GO:0007269 ! negatively regulates neurotransmitter secretion +relationship: RO:0002212 GO:0007269 ! negatively regulates neurotransmitter secretion [Term] id: GO:0046930 @@ -85398,8 +84895,8 @@ synonym: "pore formation" EXACT [] synonym: "pore-forming toxin activity" RELATED [] is_a: GO:0065003 ! protein-containing complex assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0046930 ! pore complex -relationship: results_in_assembly_of GO:0046930 ! pore complex +intersection_of: RO:0002588 GO:0046930 ! results in assembly of pore complex +relationship: RO:0002588 GO:0046930 ! results in assembly of pore complex [Term] id: GO:0046942 @@ -85408,8 +84905,8 @@ namespace: biological_process def: "The directed movement of carboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carboxylic acids are organic acids containing one or more carboxyl (COOH) groups or anions (COO-)." [GOC:ai] is_a: GO:0015711 ! organic anion transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29067 ! carboxylic acid anion -relationship: has_primary_input CHEBI:29067 ! carboxylic acid anion +intersection_of: RO:0004009 CHEBI:29067 ! has primary input carboxylic acid anion +relationship: RO:0004009 CHEBI:29067 ! has primary input carboxylic acid anion [Term] id: GO:0046943 @@ -85419,9 +84916,9 @@ def: "Enables the transfer of carboxylic acids from one side of a membrane to th xref: Reactome:R-HSA-390347 "Exchange of isocitrate and 2-oxoglutarate across the peroxisomal membrane" is_a: GO:0008514 ! organic anion transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:29067 ! carboxylic acid anion -relationship: has_primary_input CHEBI:29067 ! carboxylic acid anion +intersection_of: RO:0004009 CHEBI:29067 ! has primary input carboxylic acid anion relationship: part_of GO:1905039 ! carboxylic acid transmembrane transport +relationship: RO:0004009 CHEBI:29067 ! has primary input carboxylic acid anion [Term] id: GO:0047496 @@ -85432,10 +84929,10 @@ synonym: "microtubule-based vesicle localization" EXACT [GOC:rl] is_a: GO:0072384 ! organelle transport along microtubule is_a: GO:0099518 ! vesicle cytoskeletal trafficking intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input GO:0031982 ! vesicle -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: has_primary_input GO:0031982 ! vesicle -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +intersection_of: RO:0004009 GO:0031982 ! has primary input vesicle +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: RO:0004009 GO:0031982 ! has primary input vesicle [Term] id: GO:0048002 @@ -85464,8 +84961,8 @@ def: "Binding to a monosaccharide. Monosaccharides are the simplest carbohydrate is_a: GO:0030246 ! carbohydrate binding is_a: GO:0036094 ! small molecule binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:35381 ! monosaccharide -relationship: has_primary_input CHEBI:35381 ! monosaccharide +intersection_of: RO:0004009 CHEBI:35381 ! has primary input monosaccharide +relationship: RO:0004009 CHEBI:35381 ! has primary input monosaccharide [Term] id: GO:0048048 @@ -85482,13 +84979,13 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the corneal lens in the compound eye over time, from its formation to the mature structure. The corneal lens is a chitinous extracellular secretion of the four underlying cone cells and the pigment cells." [GOC:jid] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: occurs_in UBERON:0000018 ! compound eye -intersection_of: results_in_development_of UBERON:0000207 ! compound eye corneal lens +intersection_of: BFO:0000066 UBERON:0000018 ! occurs in compound eye +intersection_of: RO:0002296 UBERON:0000207 ! results in development of compound eye corneal lens +relationship: BFO:0000066 UBERON:0000018 ! occurs in compound eye relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: occurs_in UBERON:0000018 ! compound eye -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of GO:0048749 ! compound eye development -relationship: results_in_development_of UBERON:0000207 ! compound eye corneal lens +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda +relationship: RO:0002296 UBERON:0000207 ! results in development of compound eye corneal lens [Term] id: GO:0048066 @@ -85506,8 +85003,8 @@ def: "Any process that modulates the frequency, rate or extent of the developmen synonym: "regulation of pigmentation during development" EXACT [GOC:dph, GOC:tb] is_a: GO:0120305 ! regulation of pigmentation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048066 ! developmental pigmentation -relationship: regulates GO:0048066 ! developmental pigmentation +intersection_of: RO:0002211 GO:0048066 ! regulates (processual) developmental pigmentation +relationship: RO:0002211 GO:0048066 ! regulates (processual) developmental pigmentation [Term] id: GO:0048086 @@ -85521,8 +85018,8 @@ synonym: "inhibition of pigmentation" NARROW [] is_a: GO:0048070 ! regulation of developmental pigmentation is_a: GO:0048519 ! negative regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048066 ! developmental pigmentation -relationship: negatively_regulates GO:0048066 ! developmental pigmentation +intersection_of: RO:0002212 GO:0048066 ! negatively regulates developmental pigmentation +relationship: RO:0002212 GO:0048066 ! negatively regulates developmental pigmentation [Term] id: GO:0048087 @@ -85537,8 +85034,8 @@ synonym: "upregulation of developmental pigmentation" EXACT [GOC:dph, GOC:tb] is_a: GO:0048070 ! regulation of developmental pigmentation is_a: GO:0048518 ! positive regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048066 ! developmental pigmentation -relationship: positively_regulates GO:0048066 ! developmental pigmentation +intersection_of: RO:0002213 GO:0048066 ! positively regulates developmental pigmentation +relationship: RO:0002213 GO:0048066 ! positively regulates developmental pigmentation [Term] id: GO:0048103 @@ -85548,8 +85045,8 @@ def: "The self-renewing division of a somatic stem cell, a stem cell that can gi synonym: "somatic stem cell renewal" EXACT [] is_a: GO:0017145 ! stem cell division intersection_of: GO:0051301 ! cell division -intersection_of: has_primary_input CL:0000723 ! somatic stem cell -relationship: has_primary_input CL:0000723 ! somatic stem cell +intersection_of: RO:0004009 CL:0000723 ! has primary input somatic stem cell +relationship: RO:0004009 CL:0000723 ! has primary input somatic stem cell [Term] id: GO:0048132 @@ -85560,11 +85057,11 @@ def: "The self-renewing division of a germline stem cell in the female gonad, to synonym: "female germ-line stem cell renewal" EXACT [] is_a: GO:0098728 ! germline stem cell asymmetric division intersection_of: GO:0008356 ! asymmetric cell division -intersection_of: has_primary_input CL:0000022 ! female germ line stem cell -relationship: has_primary_input CL:0000022 ! female germ line stem cell +intersection_of: RO:0004009 CL:0000022 ! has primary input female germ line stem cell relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of GO:0048477 ! oogenesis +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda +relationship: RO:0004009 CL:0000022 ! has primary input female germ line stem cell [Term] id: GO:0048137 @@ -85574,9 +85071,9 @@ def: "The meiotic divisions undergone by the primary and secondary spermatocytes synonym: "spermatocyte cell division" EXACT [] is_a: GO:0051301 ! cell division intersection_of: GO:0051301 ! cell division -intersection_of: has_primary_input CL:0000017 ! spermatocyte -relationship: has_primary_input CL:0000017 ! spermatocyte +intersection_of: RO:0004009 CL:0000017 ! has primary input spermatocyte relationship: part_of GO:0007283 ! spermatogenesis +relationship: RO:0004009 CL:0000017 ! has primary input spermatocyte [Term] id: GO:0048143 @@ -85585,9 +85082,9 @@ namespace: biological_process def: "A change in morphology and behavior of an astrocyte resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor." [GOC:mgi_curators, PMID:10526094, PMID:10695728, PMID:12529254, PMID:12580336, PMID:9585813] is_a: GO:0061900 ! glial cell activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000127 ! astrocyte -relationship: has_primary_input CL:0000127 ! astrocyte +intersection_of: RO:0004009 CL:0000127 ! has primary input astrocyte relationship: part_of GO:0014002 ! astrocyte development +relationship: RO:0004009 CL:0000127 ! has primary input astrocyte [Term] id: GO:0048144 @@ -85596,8 +85093,8 @@ namespace: biological_process def: "The multiplication or reproduction of fibroblast cells, resulting in the expansion of the fibroblast population." [GOC:jid] is_a: GO:0008283 ! cell population proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000057 ! fibroblast -relationship: acts_on_population_of CL:0000057 ! fibroblast +intersection_of: RO:0012003 CL:0000057 ! acts on population of fibroblast +relationship: RO:0012003 CL:0000057 ! acts on population of fibroblast [Term] id: GO:0048145 @@ -85606,8 +85103,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of multiplication or reproduction of fibroblast cells." [GOC:jid] is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048144 ! fibroblast proliferation -relationship: regulates GO:0048144 ! fibroblast proliferation +intersection_of: RO:0002211 GO:0048144 ! regulates (processual) fibroblast proliferation +relationship: RO:0002211 GO:0048144 ! regulates (processual) fibroblast proliferation [Term] id: GO:0048146 @@ -85622,8 +85119,8 @@ synonym: "upregulation of fibroblast proliferation" EXACT [] is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:0048145 ! regulation of fibroblast proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048144 ! fibroblast proliferation -relationship: positively_regulates GO:0048144 ! fibroblast proliferation +intersection_of: RO:0002213 GO:0048144 ! positively regulates fibroblast proliferation +relationship: RO:0002213 GO:0048144 ! positively regulates fibroblast proliferation [Term] id: GO:0048147 @@ -85637,8 +85134,8 @@ synonym: "inhibition of fibroblast proliferation" NARROW [] is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:0048145 ! regulation of fibroblast proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048144 ! fibroblast proliferation -relationship: negatively_regulates GO:0048144 ! fibroblast proliferation +intersection_of: RO:0002212 GO:0048144 ! negatively regulates fibroblast proliferation +relationship: RO:0002212 GO:0048144 ! negatively regulates fibroblast proliferation [Term] id: GO:0048162 @@ -85648,7 +85145,7 @@ def: "The stage in oogenesis when many layers of follicle cells surround the ooc synonym: "mammalian oogenesis stage 5" EXACT [] is_a: GO:0022605 ! mammalian oogenesis stage relationship: in_taxon NCBITaxon:40674 {all_only="true"} ! Mammalia -relationship: only_in_taxon NCBITaxon:40674 ! Mammalia +relationship: RO:0002160 NCBITaxon:40674 ! only in taxon Mammalia [Term] id: GO:0048165 @@ -85658,7 +85155,7 @@ def: "The stage in oogenesis when the antral spaces fuse to form a single antral synonym: "mammalian oogenesis stage 8" EXACT [] is_a: GO:0022605 ! mammalian oogenesis stage relationship: in_taxon NCBITaxon:40674 {all_only="true"} ! Mammalia -relationship: only_in_taxon NCBITaxon:40674 ! Mammalia +relationship: RO:0002160 NCBITaxon:40674 ! only in taxon Mammalia [Term] id: GO:0048193 @@ -85669,8 +85166,8 @@ subset: goslim_yeast synonym: "Golgi-derived vesicle transport" RELATED [] is_a: GO:0016192 ! vesicle-mediated transport intersection_of: GO:0006810 ! transport -intersection_of: results_in_transport_to_from_or_in GO:0005798 ! Golgi-associated vesicle -relationship: results_in_transport_to_from_or_in GO:0005798 ! Golgi-associated vesicle +intersection_of: RO:0002344 GO:0005798 ! results in transport to from or in Golgi-associated vesicle +relationship: RO:0002344 GO:0005798 ! results in transport to from or in Golgi-associated vesicle [Term] id: GO:0048194 @@ -85681,11 +85178,11 @@ synonym: "dictyosome vesicle budding" NARROW [] synonym: "Golgi-derived vesicle budding" EXACT [] is_a: GO:0006900 ! vesicle budding from membrane intersection_of: GO:0006900 ! vesicle budding from membrane -intersection_of: has_primary_output GO:0005798 ! Golgi-associated vesicle -intersection_of: occurs_in GO:0000139 ! Golgi membrane -relationship: has_primary_output GO:0005798 ! Golgi-associated vesicle -relationship: occurs_in GO:0000139 ! Golgi membrane +intersection_of: BFO:0000066 GO:0000139 ! occurs in Golgi membrane +intersection_of: RO:0004008 GO:0005798 ! has primary output Golgi-associated vesicle +relationship: BFO:0000066 GO:0000139 ! occurs in Golgi membrane relationship: part_of GO:0048193 ! Golgi vesicle transport +relationship: RO:0004008 GO:0005798 ! has primary output Golgi-associated vesicle [Term] id: GO:0048199 @@ -85697,11 +85194,11 @@ synonym: "Golgi vesicle targeting" EXACT [] synonym: "vesicle targeting, to, from or within dictyosome" NARROW [] is_a: GO:0006903 ! vesicle targeting intersection_of: GO:0006903 ! vesicle targeting -intersection_of: has_primary_input GO:0005798 ! Golgi-associated vesicle -intersection_of: results_in_transport_to_from_or_in GO:0005794 ! Golgi apparatus -relationship: has_primary_input GO:0005798 ! Golgi-associated vesicle +intersection_of: RO:0002344 GO:0005794 ! results in transport to from or in Golgi apparatus +intersection_of: RO:0004009 GO:0005798 ! has primary input Golgi-associated vesicle relationship: part_of GO:0048193 ! Golgi vesicle transport -relationship: results_in_transport_to_from_or_in GO:0005794 ! Golgi apparatus +relationship: RO:0002344 GO:0005794 ! results in transport to from or in Golgi apparatus +relationship: RO:0004009 GO:0005798 ! has primary input Golgi-associated vesicle [Term] id: GO:0048209 @@ -85711,9 +85208,9 @@ def: "Any process that modulates the frequency, rate, or destination of vesicle- synonym: "regulation of Golgi vesicle targeting" EXACT [] is_a: GO:0060341 ! regulation of cellular localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048199 ! vesicle targeting, to, from or within Golgi -relationship: regulates GO:0048199 ! vesicle targeting, to, from or within Golgi -relationship: regulates GO:0051641 ! cellular localization +intersection_of: RO:0002211 GO:0048199 ! regulates (processual) vesicle targeting, to, from or within Golgi +relationship: RO:0002211 GO:0048199 ! regulates (processual) vesicle targeting, to, from or within Golgi +relationship: RO:0002211 GO:0051641 ! regulates (processual) cellular localization [Term] id: GO:0048232 @@ -85743,8 +85240,8 @@ synonym: "adrenaline transport" EXACT [] is_a: GO:0015695 ! organic cation transport is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:71406 ! (R)-adrenaline(1+) -relationship: has_primary_input CHEBI:71406 ! (R)-adrenaline(1+) +intersection_of: RO:0004009 CHEBI:71406 ! has primary input (R)-adrenaline(1+) +relationship: RO:0004009 CHEBI:71406 ! has primary input (R)-adrenaline(1+) [Term] id: GO:0048242 @@ -85755,8 +85252,8 @@ synonym: "adrenaline secretion" EXACT [] is_a: GO:0046903 ! secretion is_a: GO:0048241 ! epinephrine transport intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:71406 ! (R)-adrenaline(1+) -relationship: has_primary_input CHEBI:71406 ! (R)-adrenaline(1+) +intersection_of: RO:0004009 CHEBI:71406 ! has primary input (R)-adrenaline(1+) +relationship: RO:0004009 CHEBI:71406 ! has primary input (R)-adrenaline(1+) [Term] id: GO:0048243 @@ -85768,8 +85265,8 @@ is_a: GO:0015874 ! norepinephrine transport is_a: GO:0023061 ! signal release is_a: GO:0050432 ! catecholamine secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) -relationship: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) +intersection_of: RO:0004009 CHEBI:72587 ! has primary input (R)-noradrenaline(1+) +relationship: RO:0004009 CHEBI:72587 ! has primary input (R)-noradrenaline(1+) [Term] id: GO:0048246 @@ -85779,8 +85276,8 @@ def: "The movement of a macrophage in response to an external stimulus." [GOC:ji is_a: GO:0030595 ! leukocyte chemotaxis is_a: GO:1905517 ! macrophage migration intersection_of: GO:0006935 ! chemotaxis -intersection_of: results_in_movement_of CL:0000235 ! macrophage -relationship: results_in_movement_of CL:0000235 ! macrophage +intersection_of: RO:0002565 CL:0000235 ! results in movement of macrophage +relationship: RO:0002565 CL:0000235 ! results in movement of macrophage [Term] id: GO:0048247 @@ -85790,8 +85287,8 @@ def: "The directed movement of a lymphocyte in response to an external stimulus. is_a: GO:0030595 ! leukocyte chemotaxis is_a: GO:0072676 ! lymphocyte migration intersection_of: GO:0006935 ! chemotaxis -intersection_of: results_in_movement_of CL:0000542 ! lymphocyte -relationship: results_in_movement_of CL:0000542 ! lymphocyte +intersection_of: RO:0002565 CL:0000542 ! results in movement of lymphocyte +relationship: RO:0002565 CL:0000542 ! results in movement of lymphocyte [Term] id: GO:0048251 @@ -85804,8 +85301,8 @@ synonym: "elastin fibre assembly" EXACT [GOC:BHF] is_a: GO:0085029 ! extracellular matrix assembly is_a: GO:0097435 ! supramolecular fiber organization intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0071953 ! elastic fiber -relationship: results_in_assembly_of GO:0071953 ! elastic fiber +intersection_of: RO:0002588 GO:0071953 ! results in assembly of elastic fiber +relationship: RO:0002588 GO:0071953 ! results in assembly of elastic fiber [Term] id: GO:0048280 @@ -85815,11 +85312,11 @@ def: "The joining of the lipid bilayer membrane around a vesicle to the lipid bi is_a: GO:0006906 ! vesicle fusion is_a: GO:0007030 ! Golgi organization intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_fusion_of GO:0005794 ! Golgi apparatus -intersection_of: results_in_fusion_of GO:0031982 ! vesicle +intersection_of: RO:0012008 GO:0005794 ! results in fusion of Golgi apparatus +intersection_of: RO:0012008 GO:0031982 ! results in fusion of vesicle relationship: part_of GO:0048193 ! Golgi vesicle transport -relationship: results_in_fusion_of GO:0005794 ! Golgi apparatus -relationship: results_in_fusion_of GO:0031982 ! vesicle +relationship: RO:0012008 GO:0005794 ! results in fusion of Golgi apparatus +relationship: RO:0012008 GO:0031982 ! results in fusion of vesicle [Term] id: GO:0048284 @@ -85830,8 +85327,8 @@ subset: goslim_pir subset: goslim_yeast is_a: GO:0006996 ! organelle organization intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_fusion_of GO:0043226 ! organelle -relationship: results_in_fusion_of GO:0043226 ! organelle +intersection_of: RO:0012008 GO:0043226 ! results in fusion of organelle +relationship: RO:0012008 GO:0043226 ! results in fusion of organelle [Term] id: GO:0048285 @@ -85854,9 +85351,9 @@ synonym: "alveolarization" EXACT [PMID:17911382] synonym: "alveologenesis" EXACT [GOC:17911382] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002299 ! alveolus of lung +intersection_of: RO:0002296 UBERON:0002299 ! results in development of alveolus of lung relationship: part_of GO:0030324 ! lung development -relationship: results_in_development_of UBERON:0002299 ! alveolus of lung +relationship: RO:0002296 UBERON:0002299 ! results in development of alveolus of lung [Term] id: GO:0048288 @@ -85909,8 +85406,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the axial mesoderm over time, from its formation to the mature structure. The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord." [GOC:dgh] is_a: GO:0007498 ! mesoderm development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003068 ! axial mesoderm -relationship: results_in_development_of UBERON:0003068 ! axial mesoderm +intersection_of: RO:0002296 UBERON:0003068 ! results in development of axial mesoderm +relationship: RO:0002296 UBERON:0003068 ! results in development of axial mesoderm [Term] id: GO:0048319 @@ -85919,9 +85416,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the axial mesoderm are generated and organized." [GOC:go_curators] is_a: GO:0048332 ! mesoderm morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003068 ! axial mesoderm +intersection_of: RO:0002298 UBERON:0003068 ! results in morphogenesis of axial mesoderm relationship: part_of GO:0048318 ! axial mesoderm development -relationship: results_in_morphogenesis_of UBERON:0003068 ! axial mesoderm +relationship: RO:0002298 UBERON:0003068 ! results in morphogenesis of axial mesoderm [Term] id: GO:0048320 @@ -85930,9 +85427,9 @@ namespace: biological_process def: "The process that gives rise to the axial mesoderm. This process pertains to the initial formation of the structure from unspecified parts." [GOC:dgh] is_a: GO:0001707 ! mesoderm formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003068 ! axial mesoderm +intersection_of: RO:0002297 UBERON:0003068 ! results in formation of anatomical entity axial mesoderm relationship: part_of GO:0048319 ! axial mesoderm morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0003068 ! axial mesoderm +relationship: RO:0002297 UBERON:0003068 ! results in formation of anatomical entity axial mesoderm [Term] id: GO:0048332 @@ -85941,9 +85438,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the mesoderm are generated and organized." [GOC:go_curators] is_a: GO:0048729 ! tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000926 ! mesoderm +intersection_of: RO:0002298 UBERON:0000926 ! results in morphogenesis of mesoderm relationship: part_of GO:0007498 ! mesoderm development -relationship: results_in_morphogenesis_of UBERON:0000926 ! mesoderm +relationship: RO:0002298 UBERON:0000926 ! results in morphogenesis of mesoderm [Term] id: GO:0048333 @@ -85953,9 +85450,9 @@ def: "The process in which a relatively unspecialized cell acquires the speciali synonym: "mesoderm cell differentiation" EXACT [] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000222 ! mesodermal cell +intersection_of: RO:0002315 CL:0000222 ! results in acquisition of features of mesodermal cell relationship: part_of GO:0001707 ! mesoderm formation -relationship: results_in_acquisition_of_features_of CL:0000222 ! mesodermal cell +relationship: RO:0002315 CL:0000222 ! results in acquisition of features of mesodermal cell [Term] id: GO:0048339 @@ -85965,8 +85462,8 @@ def: "The process whose specific outcome is the progression of the paraxial meso is_a: GO:0007498 ! mesoderm development is_a: GO:0060485 ! mesenchyme development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003077 ! paraxial mesoderm -relationship: results_in_development_of UBERON:0003077 ! paraxial mesoderm +intersection_of: RO:0002296 UBERON:0003077 ! results in development of paraxial mesoderm +relationship: RO:0002296 UBERON:0003077 ! results in development of paraxial mesoderm [Term] id: GO:0048340 @@ -85976,9 +85473,9 @@ def: "The process in which the anatomical structures of the paraxial mesoderm ar is_a: GO:0048332 ! mesoderm morphogenesis is_a: GO:0072132 ! mesenchyme morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003077 ! paraxial mesoderm +intersection_of: RO:0002298 UBERON:0003077 ! results in morphogenesis of paraxial mesoderm relationship: part_of GO:0048339 ! paraxial mesoderm development -relationship: results_in_morphogenesis_of UBERON:0003077 ! paraxial mesoderm +relationship: RO:0002298 UBERON:0003077 ! results in morphogenesis of paraxial mesoderm [Term] id: GO:0048341 @@ -85987,9 +85484,9 @@ namespace: biological_process def: "The process that gives rise to the paraxial mesoderm. This process pertains to the initial formation of the structure from unspecified parts." [GOC:dgh] is_a: GO:0001707 ! mesoderm formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003077 ! paraxial mesoderm +intersection_of: RO:0002297 UBERON:0003077 ! results in formation of anatomical entity paraxial mesoderm relationship: part_of GO:0048340 ! paraxial mesoderm morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0003077 ! paraxial mesoderm +relationship: RO:0002297 UBERON:0003077 ! results in formation of anatomical entity paraxial mesoderm [Term] id: GO:0048368 @@ -86000,8 +85497,8 @@ synonym: "lateral plate mesoderm development" EXACT [] is_a: GO:0007498 ! mesoderm development is_a: GO:0060485 ! mesenchyme development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003081 ! lateral plate mesoderm -relationship: results_in_development_of UBERON:0003081 ! lateral plate mesoderm +intersection_of: RO:0002296 UBERON:0003081 ! results in development of lateral plate mesoderm +relationship: RO:0002296 UBERON:0003081 ! results in development of lateral plate mesoderm [Term] id: GO:0048369 @@ -86012,9 +85509,9 @@ synonym: "lateral plate mesoderm morphogenesis" EXACT [] is_a: GO:0048332 ! mesoderm morphogenesis is_a: GO:0072132 ! mesenchyme morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003081 ! lateral plate mesoderm +intersection_of: RO:0002298 UBERON:0003081 ! results in morphogenesis of lateral plate mesoderm relationship: part_of GO:0048368 ! lateral mesoderm development -relationship: results_in_morphogenesis_of UBERON:0003081 ! lateral plate mesoderm +relationship: RO:0002298 UBERON:0003081 ! results in morphogenesis of lateral plate mesoderm [Term] id: GO:0048370 @@ -86025,9 +85522,9 @@ synonym: "lateral plate mesoderm biosynthesis" EXACT [] synonym: "lateral plate mesoderm formation" EXACT [] is_a: GO:0001707 ! mesoderm formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003081 ! lateral plate mesoderm +intersection_of: RO:0002298 UBERON:0003081 ! results in morphogenesis of lateral plate mesoderm relationship: part_of GO:0048369 ! lateral mesoderm morphogenesis -relationship: results_in_morphogenesis_of UBERON:0003081 ! lateral plate mesoderm +relationship: RO:0002298 UBERON:0003081 ! results in morphogenesis of lateral plate mesoderm [Term] id: GO:0048383 @@ -86036,10 +85533,10 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the mesectoderm over time, from its formation to the mature structure. In animal embryos, mesectoderm development processes give rise to both mesoderm and ectoderm tissues." [GOC:jid] is_a: GO:0009888 ! tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000927 ! mesectoderm +intersection_of: RO:0002296 UBERON:0000927 ! results in development of mesectoderm relationship: part_of GO:0007398 ! ectoderm development relationship: part_of GO:0007498 ! mesoderm development -relationship: results_in_development_of UBERON:0000927 ! mesectoderm +relationship: RO:0002296 UBERON:0000927 ! results in development of mesectoderm [Term] id: GO:0048389 @@ -86048,8 +85545,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the intermediate mesoderm over time, from its formation to the mature structure. The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads." [GOC:dgh] is_a: GO:0007498 ! mesoderm development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003064 ! intermediate mesoderm -relationship: results_in_development_of UBERON:0003064 ! intermediate mesoderm +intersection_of: RO:0002296 UBERON:0003064 ! results in development of intermediate mesoderm +relationship: RO:0002296 UBERON:0003064 ! results in development of intermediate mesoderm [Term] id: GO:0048390 @@ -86058,9 +85555,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the intermediate mesoderm are generated and organized." [GOC:go_curators] is_a: GO:0048332 ! mesoderm morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003064 ! intermediate mesoderm +intersection_of: RO:0002298 UBERON:0003064 ! results in morphogenesis of intermediate mesoderm relationship: part_of GO:0048389 ! intermediate mesoderm development -relationship: results_in_morphogenesis_of UBERON:0003064 ! intermediate mesoderm +relationship: RO:0002298 UBERON:0003064 ! results in morphogenesis of intermediate mesoderm [Term] id: GO:0048391 @@ -86069,9 +85566,9 @@ namespace: biological_process def: "The process that gives rise to the intermediate mesoderm. This process pertains to the initial formation of the structure from unspecified parts." [GOC:dgh] is_a: GO:0001707 ! mesoderm formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003064 ! intermediate mesoderm +intersection_of: RO:0002297 UBERON:0003064 ! results in formation of anatomical entity intermediate mesoderm relationship: part_of GO:0048390 ! intermediate mesoderm morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0003064 ! intermediate mesoderm +relationship: RO:0002297 UBERON:0003064 ! results in formation of anatomical entity intermediate mesoderm [Term] id: GO:0048468 @@ -86083,9 +85580,9 @@ synonym: "terminal differentiation" RELATED [GOC:dph, GOC:tb] is_a: GO:0048856 ! anatomical structure development is_a: GO:0048869 ! cellular developmental process intersection_of: GO:0008150 ! biological_process -intersection_of: results_in_development_of CL:0000000 ! cell +intersection_of: RO:0002296 CL:0000000 ! results in development of cell relationship: part_of GO:0030154 ! cell differentiation -relationship: results_in_development_of CL:0000000 ! cell +relationship: RO:0002296 CL:0000000 ! results in development of cell property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24390" xsd:anyURI [Term] @@ -86098,9 +85595,9 @@ synonym: "functional differentiation" RELATED [GOC:dph] is_a: GO:0048869 ! cellular developmental process is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of CL:0000000 ! cell +intersection_of: RO:0002299 CL:0000000 ! results in maturation of cell relationship: part_of GO:0048468 ! cell development -relationship: results_in_maturation_of CL:0000000 ! cell +relationship: RO:0002299 CL:0000000 ! results in maturation of cell property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24390" xsd:anyURI [Term] @@ -86115,10 +85612,10 @@ xref: Wikipedia:Oogenesis is_a: GO:0007281 ! germ cell development is_a: GO:0007292 ! female gamete generation intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:0000025 ! egg cell +intersection_of: RO:0002296 CL:0000025 ! results in development of egg cell relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa -relationship: results_in_development_of CL:0000025 ! egg cell +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0002296 CL:0000025 ! results in development of egg cell [Term] id: GO:0048483 @@ -86127,9 +85624,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the autonomic nervous system over time, from its formation to the mature structure. The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands." [FMA:9905, GOC:jid, GOC:sr] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002410 ! autonomic nervous system +intersection_of: RO:0002296 UBERON:0002410 ! results in development of autonomic nervous system relationship: part_of GO:0007399 ! nervous system development -relationship: results_in_development_of UBERON:0002410 ! autonomic nervous system +relationship: RO:0002296 UBERON:0002410 ! results in development of autonomic nervous system [Term] id: GO:0048484 @@ -86138,9 +85635,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the enteric nervous system over time, from its formation to the mature structure. The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gallbladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation." [FMA:66070, GOC:jid, GOC:sr] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002005 ! enteric nervous system +intersection_of: RO:0002296 UBERON:0002005 ! results in development of enteric nervous system relationship: part_of GO:0048483 ! autonomic nervous system development -relationship: results_in_development_of UBERON:0002005 ! enteric nervous system +relationship: RO:0002296 UBERON:0002005 ! results in development of enteric nervous system [Term] id: GO:0048485 @@ -86149,9 +85646,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the sympathetic nervous system over time, from its formation to the mature structure. The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter." [FMA:9906, GOC:jid, GOC:sr] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000013 ! sympathetic nervous system +intersection_of: RO:0002296 UBERON:0000013 ! results in development of sympathetic nervous system relationship: part_of GO:0048483 ! autonomic nervous system development -relationship: results_in_development_of UBERON:0000013 ! sympathetic nervous system +relationship: RO:0002296 UBERON:0000013 ! results in development of sympathetic nervous system [Term] id: GO:0048486 @@ -86160,9 +85657,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the parasympathetic nervous system over time, from its formation to the mature structure. The parasympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system. Parasympathetic nerves emerge cranially as pre ganglionic fibers from oculomotor, facial, glossopharyngeal and vagus and from the sacral region of the spinal cord. Most neurons are cholinergic and responses are mediated by muscarinic receptors. The parasympathetic system innervates, for example: salivary glands, thoracic and abdominal viscera, bladder and genitalia." [FMA:9907, GOC:jid, GOC:sr] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000011 ! parasympathetic nervous system +intersection_of: RO:0002296 UBERON:0000011 ! results in development of parasympathetic nervous system relationship: part_of GO:0048483 ! autonomic nervous system development -relationship: results_in_development_of UBERON:0000011 ! parasympathetic nervous system +relationship: RO:0002296 UBERON:0000011 ! results in development of parasympathetic nervous system [Term] id: GO:0048505 @@ -86182,7 +85679,7 @@ subset: goslim_pir synonym: "rhythm" RELATED [] is_a: GO:0008150 ! biological_process relationship: in_taxon NCBITaxon:131567 {all_only="true"} ! cellular organisms -relationship: only_in_taxon NCBITaxon:131567 ! cellular organisms +relationship: RO:0002160 NCBITaxon:131567 ! only in taxon cellular organisms [Term] id: GO:0048512 @@ -86211,9 +85708,9 @@ namespace: biological_process def: "The process in which the anatomical structures of blood vessels are generated and organized. The blood vessel is the vasculature carrying blood." [GOC:jid] is_a: GO:0035239 ! tube morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001981 ! blood vessel +intersection_of: RO:0002298 UBERON:0001981 ! results in morphogenesis of blood vessel relationship: part_of GO:0001568 ! blood vessel development -relationship: results_in_morphogenesis_of UBERON:0001981 ! blood vessel +relationship: RO:0002298 UBERON:0001981 ! results in morphogenesis of blood vessel [Term] id: GO:0048515 @@ -86225,9 +85722,9 @@ is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0022412 ! cellular process involved in reproduction in multicellular organism is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000018 ! spermatid +intersection_of: RO:0002315 CL:0000018 ! results in acquisition of features of spermatid relationship: part_of GO:0007283 ! spermatogenesis -relationship: results_in_acquisition_of_features_of CL:0000018 ! spermatid +relationship: RO:0002315 CL:0000018 ! results in acquisition of features of spermatid [Term] id: GO:0048518 @@ -86244,8 +85741,8 @@ synonym: "up-regulation of biological process" EXACT [] synonym: "upregulation of biological process" EXACT [] is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008150 ! biological_process -relationship: positively_regulates GO:0008150 ! biological_process +intersection_of: RO:0002213 GO:0008150 ! positively regulates biological_process +relationship: RO:0002213 GO:0008150 ! positively regulates biological_process [Term] id: GO:0048519 @@ -86261,8 +85758,8 @@ synonym: "inhibition of biological process" NARROW [] synonym: "negative regulation of physiological process" EXACT [] is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008150 ! biological_process -relationship: negatively_regulates GO:0008150 ! biological_process +intersection_of: RO:0002212 GO:0008150 ! negatively regulates biological_process +relationship: RO:0002212 GO:0008150 ! negatively regulates biological_process [Term] id: GO:0048520 @@ -86277,8 +85774,8 @@ synonym: "upregulation of behavior" EXACT [] is_a: GO:0050795 ! regulation of behavior is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007610 ! behavior -relationship: positively_regulates GO:0007610 ! behavior +intersection_of: RO:0002213 GO:0007610 ! positively regulates behavior +relationship: RO:0002213 GO:0007610 ! positively regulates behavior [Term] id: GO:0048521 @@ -86292,8 +85789,8 @@ synonym: "inhibition of behavior" NARROW [] is_a: GO:0050795 ! regulation of behavior is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007610 ! behavior -relationship: negatively_regulates GO:0007610 ! behavior +intersection_of: RO:0002212 GO:0007610 ! negatively regulates behavior +relationship: RO:0002212 GO:0007610 ! negatively regulates behavior [Term] id: GO:0048522 @@ -86311,8 +85808,8 @@ synonym: "upregulation of cellular process" EXACT [] is_a: GO:0048518 ! positive regulation of biological process is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009987 ! cellular process -relationship: positively_regulates GO:0009987 ! cellular process +intersection_of: RO:0002213 GO:0009987 ! positively regulates cellular process +relationship: RO:0002213 GO:0009987 ! positively regulates cellular process [Term] id: GO:0048523 @@ -86329,8 +85826,8 @@ synonym: "negative regulation of cellular physiological process" EXACT [] is_a: GO:0048519 ! negative regulation of biological process is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009987 ! cellular process -relationship: negatively_regulates GO:0009987 ! cellular process +intersection_of: RO:0002212 GO:0009987 ! negatively regulates cellular process +relationship: RO:0002212 GO:0009987 ! negatively regulates cellular process [Term] id: GO:0048534 @@ -86351,8 +85848,8 @@ def: "The process whose specific outcome is the progression of lymph nodes over synonym: "lymph gland development" BROAD [] is_a: GO:0048534 ! hematopoietic or lymphoid organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000029 ! lymph node -relationship: results_in_development_of UBERON:0000029 ! lymph node +intersection_of: RO:0002296 UBERON:0000029 ! results in development of lymph node +relationship: RO:0002296 UBERON:0000029 ! results in development of lymph node [Term] id: GO:0048536 @@ -86361,8 +85858,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the spleen over time, from its formation to the mature structure. The spleen is a large vascular lymphatic organ composed of white and red pulp, involved both in hemopoietic and immune system functions." [GOC:add, ISBN:0781735149] is_a: GO:0048534 ! hematopoietic or lymphoid organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002106 ! spleen -relationship: results_in_development_of UBERON:0002106 ! spleen +intersection_of: RO:0002296 UBERON:0002106 ! results in development of spleen +relationship: RO:0002296 UBERON:0002106 ! results in development of spleen [Term] id: GO:0048537 @@ -86379,8 +85876,8 @@ synonym: "nasopharyngeal-associated lymphoid tissue development" NARROW [] is_a: GO:0009888 ! tissue development is_a: GO:0048534 ! hematopoietic or lymphoid organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001961 ! mucosa-associated lymphoid tissue -relationship: results_in_development_of UBERON:0001961 ! mucosa-associated lymphoid tissue +intersection_of: RO:0002296 UBERON:0001961 ! results in development of mucosa-associated lymphoid tissue +relationship: RO:0002296 UBERON:0001961 ! results in development of mucosa-associated lymphoid tissue property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19918" xsd:anyURI [Term] @@ -86392,8 +85889,8 @@ comment: Note that this term is reserved for annotation of gene products involve is_a: GO:0048534 ! hematopoietic or lymphoid organ development is_a: GO:0048732 ! gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002370 ! thymus -relationship: results_in_development_of UBERON:0002370 ! thymus +intersection_of: RO:0002296 UBERON:0002370 ! results in development of thymus +relationship: RO:0002296 UBERON:0002370 ! results in development of thymus [Term] id: GO:0048539 @@ -86403,9 +85900,9 @@ def: "The process whose specific outcome is the progression of the bone marrow o is_a: GO:0009888 ! tissue development is_a: GO:0048534 ! hematopoietic or lymphoid organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002371 ! bone marrow +intersection_of: RO:0002296 UBERON:0002371 ! results in development of bone marrow relationship: part_of GO:0060348 ! bone development -relationship: results_in_development_of UBERON:0002371 ! bone marrow +relationship: RO:0002296 UBERON:0002371 ! results in development of bone marrow [Term] id: GO:0048540 @@ -86414,10 +85911,10 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the bursa of Fabricius over time, from its formation to the mature structure. The bursa of Fabricius is an organ found in birds involved in B cell differentiation." [GOC:add, ISBN:0781735149] is_a: GO:0048534 ! hematopoietic or lymphoid organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003903 ! bursa of Fabricius +intersection_of: RO:0002296 UBERON:0003903 ! results in development of bursa of Fabricius relationship: in_taxon NCBITaxon:8457 {all_only="true"} ! Sauropsida -relationship: only_in_taxon NCBITaxon:8457 ! Sauropsida -relationship: results_in_development_of UBERON:0003903 ! bursa of Fabricius +relationship: RO:0002160 NCBITaxon:8457 ! only in taxon Sauropsida +relationship: RO:0002296 UBERON:0003903 ! results in development of bursa of Fabricius [Term] id: GO:0048541 @@ -86428,8 +85925,8 @@ synonym: "GALT development" RELATED [] synonym: "gut-associated lymphoid tissue development" RELATED [] is_a: GO:0048537 ! mucosa-associated lymphoid tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001211 ! Peyer's patch -relationship: results_in_development_of UBERON:0001211 ! Peyer's patch +intersection_of: RO:0002296 UBERON:0001211 ! results in development of Peyer's patch +relationship: RO:0002296 UBERON:0001211 ! results in development of Peyer's patch [Term] id: GO:0048545 @@ -86441,8 +85938,8 @@ is_a: GO:0009725 ! response to hormone is_a: GO:0014070 ! response to organic cyclic compound is_a: GO:0033993 ! response to lipid intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:26764 ! steroid hormone -relationship: has_primary_input CHEBI:26764 ! steroid hormone +intersection_of: RO:0004009 CHEBI:26764 ! has primary input steroid hormone +relationship: RO:0004009 CHEBI:26764 ! has primary input steroid hormone [Term] id: GO:0048546 @@ -86457,9 +85954,9 @@ synonym: "gut morphogenesis" BROAD [GOC:dph] synonym: "intestinal morphogenesis" NARROW [] is_a: GO:0035239 ! tube morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001555 ! digestive tract +intersection_of: RO:0002298 UBERON:0001555 ! results in morphogenesis of digestive tract relationship: part_of GO:0048565 ! digestive tract development -relationship: results_in_morphogenesis_of UBERON:0001555 ! digestive tract +relationship: RO:0002298 UBERON:0001555 ! results in morphogenesis of digestive tract [Term] id: GO:0048562 @@ -86480,9 +85977,9 @@ synonym: "intestinal development" NARROW [] synonym: "intestine development" NARROW [] is_a: GO:0035295 ! tube development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001555 ! digestive tract +intersection_of: RO:0002296 UBERON:0001555 ! results in development of digestive tract relationship: part_of GO:0055123 ! digestive system development -relationship: results_in_development_of UBERON:0001555 ! digestive tract +relationship: RO:0002296 UBERON:0001555 ! results in development of digestive tract [Term] id: GO:0048568 @@ -86493,9 +85990,9 @@ synonym: "embryonic organogenesis" EXACT [] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development intersection_of: part_of GO:0009790 ! embryo development -intersection_of: results_in_development_of UBERON:0000062 ! organ +intersection_of: RO:0002296 UBERON:0000062 ! results in development of organ relationship: part_of GO:0009790 ! embryo development -relationship: results_in_development_of UBERON:0000062 ! organ +relationship: RO:0002296 UBERON:0000062 ! results in development of organ [Term] id: GO:0048570 @@ -86504,9 +86001,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the notochord are generated and organized. The notochord is a mesoderm-derived structure located ventral of the developing nerve cord. In vertebrates, the notochord serves as a core around which other mesodermal cells form the vertebrae. In the most primitive chordates, which lack vertebrae, the notochord persists as a substitute for a vertebral column." [GOC:jid] is_a: GO:0048562 ! embryonic organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002328 ! notochord +intersection_of: RO:0002298 UBERON:0002328 ! results in morphogenesis of notochord relationship: part_of GO:0030903 ! notochord development -relationship: results_in_morphogenesis_of UBERON:0002328 ! notochord +relationship: RO:0002298 UBERON:0002328 ! results in morphogenesis of notochord [Term] id: GO:0048580 @@ -86515,8 +86012,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of post-embryonic development. Post-embryonic development is defined as the process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure." [GOC:jid] is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009791 ! post-embryonic development -relationship: regulates GO:0009791 ! post-embryonic development +intersection_of: RO:0002211 GO:0009791 ! regulates (processual) post-embryonic development +relationship: RO:0002211 GO:0009791 ! regulates (processual) post-embryonic development [Term] id: GO:0048581 @@ -86531,8 +86028,8 @@ is_a: GO:0048580 ! regulation of post-embryonic development is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009791 ! post-embryonic development -relationship: negatively_regulates GO:0009791 ! post-embryonic development +intersection_of: RO:0002212 GO:0009791 ! negatively regulates post-embryonic development +relationship: RO:0002212 GO:0009791 ! negatively regulates post-embryonic development [Term] id: GO:0048582 @@ -86548,8 +86045,8 @@ is_a: GO:0048580 ! regulation of post-embryonic development is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009791 ! post-embryonic development -relationship: positively_regulates GO:0009791 ! post-embryonic development +intersection_of: RO:0002213 GO:0009791 ! positively regulates post-embryonic development +relationship: RO:0002213 GO:0009791 ! positively regulates post-embryonic development [Term] id: GO:0048583 @@ -86560,8 +86057,8 @@ comment: Note that this term is in the subset of terms that should not be used f subset: gocheck_do_not_annotate is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0050896 ! response to stimulus -relationship: regulates GO:0050896 ! response to stimulus +intersection_of: RO:0002211 GO:0050896 ! regulates (processual) response to stimulus +relationship: RO:0002211 GO:0050896 ! regulates (processual) response to stimulus [Term] id: GO:0048584 @@ -86578,8 +86075,8 @@ synonym: "upregulation of response to stimulus" EXACT [] is_a: GO:0048518 ! positive regulation of biological process is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0050896 ! response to stimulus -relationship: positively_regulates GO:0050896 ! response to stimulus +intersection_of: RO:0002213 GO:0050896 ! positively regulates response to stimulus +relationship: RO:0002213 GO:0050896 ! positively regulates response to stimulus [Term] id: GO:0048585 @@ -86595,8 +86092,8 @@ synonym: "inhibition of response to stimulus" NARROW [] is_a: GO:0048519 ! negative regulation of biological process is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0050896 ! response to stimulus -relationship: negatively_regulates GO:0050896 ! response to stimulus +intersection_of: RO:0002212 GO:0050896 ! negatively regulates response to stimulus +relationship: RO:0002212 GO:0050896 ! negatively regulates response to stimulus [Term] id: GO:0048588 @@ -86628,9 +86125,9 @@ alt_id: GO:0048748 def: "The process in which the anatomical structures of the eye are generated and organized." [GOC:jid, GOC:mtg_sensu] is_a: GO:0090596 ! sensory organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000970 ! eye +intersection_of: RO:0002298 UBERON:0000970 ! results in morphogenesis of eye relationship: part_of GO:0001654 ! eye development -relationship: results_in_morphogenesis_of UBERON:0000970 ! eye +relationship: RO:0002298 UBERON:0000970 ! results in morphogenesis of eye [Term] id: GO:0048593 @@ -86642,9 +86139,9 @@ def: "The process in which the anatomical structures of the eye are generated an synonym: "camera-style eye morphogenesis" EXACT [GOC:dph] is_a: GO:0048592 ! eye morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000019 ! camera-type eye +intersection_of: RO:0002298 UBERON:0000019 ! results in morphogenesis of camera-type eye relationship: part_of GO:0043010 ! camera-type eye development -relationship: results_in_morphogenesis_of UBERON:0000019 ! camera-type eye +relationship: RO:0002298 UBERON:0000019 ! results in morphogenesis of camera-type eye [Term] id: GO:0048596 @@ -86673,9 +86170,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of an oocyte over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell." [GOC:go_curators] is_a: GO:0007281 ! germ cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000023 ! oocyte +intersection_of: RO:0002296 CL:0000023 ! results in development of oocyte relationship: part_of GO:0009994 ! oocyte differentiation -relationship: results_in_development_of CL:0000023 ! oocyte +relationship: RO:0002296 CL:0000023 ! results in development of oocyte [Term] id: GO:0048601 @@ -86686,11 +86183,11 @@ synonym: "oocyte morphogenesis during differentiation" EXACT [] is_a: GO:0000902 ! cell morphogenesis is_a: GO:0003006 ! developmental process involved in reproduction intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of CL:0000023 ! oocyte +intersection_of: RO:0002298 CL:0000023 ! results in morphogenesis of oocyte relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa relationship: part_of GO:0048599 ! oocyte development -relationship: results_in_morphogenesis_of CL:0000023 ! oocyte +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0002298 CL:0000023 ! results in morphogenesis of oocyte [Term] id: GO:0048608 @@ -86729,9 +86226,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the myoblast over time, from its formation to the mature structure. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers." [CL:0000056, GOC:dph, GOC:mtg_muscle] is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000056 ! myoblast +intersection_of: RO:0002296 CL:0000056 ! results in development of myoblast relationship: part_of GO:0045445 ! myoblast differentiation -relationship: results_in_development_of CL:0000056 ! myoblast +relationship: RO:0002296 CL:0000056 ! results in development of myoblast [Term] id: GO:0048628 @@ -86740,9 +86237,9 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for a myoblast to attain its fully functional state. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers." [CL:0000056, GOC:dph, GOC:mtg_muscle] is_a: GO:0048469 ! cell maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of CL:0000056 ! myoblast +intersection_of: RO:0002299 CL:0000056 ! results in maturation of myoblast relationship: part_of GO:0048627 ! myoblast development -relationship: results_in_maturation_of CL:0000056 ! myoblast +relationship: RO:0002299 CL:0000056 ! results in maturation of myoblast [Term] id: GO:0048630 @@ -86751,9 +86248,9 @@ namespace: biological_process def: "The increase in size or mass of a skeletal muscle. This may be due to a change in the fiber number or size." [GOC:lm, PMID:15726494, PMID:15907921] is_a: GO:0048589 ! developmental growth intersection_of: GO:0048589 ! developmental growth -intersection_of: results_in_growth_of UBERON:0001134 ! skeletal muscle tissue +intersection_of: RO:0002343 UBERON:0001134 ! results in growth of skeletal muscle tissue relationship: part_of GO:0007519 ! skeletal muscle tissue development -relationship: results_in_growth_of UBERON:0001134 ! skeletal muscle tissue +relationship: RO:0002343 UBERON:0001134 ! results in growth of skeletal muscle tissue [Term] id: GO:0048631 @@ -86762,8 +86259,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of skeletal muscle growth." [GOC:lm, PMID:15726494, PMID:15907921] is_a: GO:0048638 ! regulation of developmental growth intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048630 ! skeletal muscle tissue growth -relationship: regulates GO:0048630 ! skeletal muscle tissue growth +intersection_of: RO:0002211 GO:0048630 ! regulates (processual) skeletal muscle tissue growth +relationship: RO:0002211 GO:0048630 ! regulates (processual) skeletal muscle tissue growth [Term] id: GO:0048632 @@ -86777,8 +86274,8 @@ synonym: "inhibition of skeletal muscle growth" NARROW [] is_a: GO:0048631 ! regulation of skeletal muscle tissue growth is_a: GO:0048640 ! negative regulation of developmental growth intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048630 ! skeletal muscle tissue growth -relationship: negatively_regulates GO:0048630 ! skeletal muscle tissue growth +intersection_of: RO:0002212 GO:0048630 ! negatively regulates skeletal muscle tissue growth +relationship: RO:0002212 GO:0048630 ! negatively regulates skeletal muscle tissue growth [Term] id: GO:0048633 @@ -86794,9 +86291,9 @@ is_a: GO:0048631 ! regulation of skeletal muscle tissue growth is_a: GO:0048639 ! positive regulation of developmental growth is_a: GO:0048643 ! positive regulation of skeletal muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048630 ! skeletal muscle tissue growth -relationship: positively_regulates GO:0007519 ! skeletal muscle tissue development -relationship: positively_regulates GO:0048630 ! skeletal muscle tissue growth +intersection_of: RO:0002213 GO:0048630 ! positively regulates skeletal muscle tissue growth +relationship: RO:0002213 GO:0007519 ! positively regulates skeletal muscle tissue development +relationship: RO:0002213 GO:0048630 ! positively regulates skeletal muscle tissue growth [Term] id: GO:0048634 @@ -86805,8 +86302,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of muscle development." [GOC:go_curators] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007517 ! muscle organ development -relationship: regulates GO:0007517 ! muscle organ development +intersection_of: RO:0002211 GO:0007517 ! regulates (processual) muscle organ development +relationship: RO:0002211 GO:0007517 ! regulates (processual) muscle organ development [Term] id: GO:0048635 @@ -86821,9 +86318,9 @@ is_a: GO:0048634 ! regulation of muscle organ development is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007517 ! muscle organ development -relationship: negatively_regulates GO:0007517 ! muscle organ development -relationship: negatively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002212 GO:0007517 ! negatively regulates muscle organ development +relationship: RO:0002212 GO:0007517 ! negatively regulates muscle organ development +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process [Term] id: GO:0048636 @@ -86839,9 +86336,9 @@ is_a: GO:0048634 ! regulation of muscle organ development is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007517 ! muscle organ development -relationship: positively_regulates GO:0007517 ! muscle organ development -relationship: positively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002213 GO:0007517 ! positively regulates muscle organ development +relationship: RO:0002213 GO:0007517 ! positively regulates muscle organ development +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process [Term] id: GO:0048638 @@ -86851,8 +86348,8 @@ def: "Any process that modulates the frequency, rate or extent of developmental is_a: GO:0040008 ! regulation of growth is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048589 ! developmental growth -relationship: regulates GO:0048589 ! developmental growth +intersection_of: RO:0002211 GO:0048589 ! regulates (processual) developmental growth +relationship: RO:0002211 GO:0048589 ! regulates (processual) developmental growth [Term] id: GO:0048639 @@ -86868,8 +86365,8 @@ is_a: GO:0045927 ! positive regulation of growth is_a: GO:0048638 ! regulation of developmental growth is_a: GO:0051094 ! positive regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048589 ! developmental growth -relationship: positively_regulates GO:0048589 ! developmental growth +intersection_of: RO:0002213 GO:0048589 ! positively regulates developmental growth +relationship: RO:0002213 GO:0048589 ! positively regulates developmental growth [Term] id: GO:0048640 @@ -86884,8 +86381,8 @@ is_a: GO:0045926 ! negative regulation of growth is_a: GO:0048638 ! regulation of developmental growth is_a: GO:0051093 ! negative regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048589 ! developmental growth -relationship: negatively_regulates GO:0048589 ! developmental growth +intersection_of: RO:0002212 GO:0048589 ! negatively regulates developmental growth +relationship: RO:0002212 GO:0048589 ! negatively regulates developmental growth [Term] id: GO:0048641 @@ -86894,8 +86391,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of skeletal muscle tissue development." [GOC:go_curators] is_a: GO:0016202 ! regulation of striated muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007519 ! skeletal muscle tissue development -relationship: regulates GO:0007519 ! skeletal muscle tissue development +intersection_of: RO:0002211 GO:0007519 ! regulates (processual) skeletal muscle tissue development +relationship: RO:0002211 GO:0007519 ! regulates (processual) skeletal muscle tissue development [Term] id: GO:0048642 @@ -86909,8 +86406,8 @@ synonym: "inhibition of skeletal muscle development" NARROW [] is_a: GO:0045843 ! negative regulation of striated muscle tissue development is_a: GO:0048641 ! regulation of skeletal muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007519 ! skeletal muscle tissue development -relationship: negatively_regulates GO:0007519 ! skeletal muscle tissue development +intersection_of: RO:0002212 GO:0007519 ! negatively regulates skeletal muscle tissue development +relationship: RO:0002212 GO:0007519 ! negatively regulates skeletal muscle tissue development [Term] id: GO:0048643 @@ -86925,8 +86422,8 @@ synonym: "upregulation of skeletal muscle development" EXACT [] is_a: GO:0045844 ! positive regulation of striated muscle tissue development is_a: GO:0048641 ! regulation of skeletal muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007519 ! skeletal muscle tissue development -relationship: positively_regulates GO:0007519 ! skeletal muscle tissue development +intersection_of: RO:0002213 GO:0007519 ! positively regulates skeletal muscle tissue development +relationship: RO:0002213 GO:0007519 ! positively regulates skeletal muscle tissue development [Term] id: GO:0048644 @@ -86935,9 +86432,9 @@ namespace: biological_process def: "The process in which the anatomical structures of muscle are generated and organized." [GOC:jid] is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001630 ! muscle organ +intersection_of: RO:0002298 UBERON:0001630 ! results in morphogenesis of muscle organ relationship: part_of GO:0007517 ! muscle organ development -relationship: results_in_morphogenesis_of UBERON:0001630 ! muscle organ +relationship: RO:0002298 UBERON:0001630 ! results in morphogenesis of muscle organ [Term] id: GO:0048645 @@ -86948,9 +86445,9 @@ synonym: "animal organ primordium initiation" NARROW [] synonym: "initiation of an animal organ primordium" NARROW [] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003103 ! compound organ +intersection_of: RO:0002297 UBERON:0003103 ! results in formation of anatomical entity compound organ relationship: part_of GO:0009887 ! animal organ morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0003103 ! compound organ +relationship: RO:0002297 UBERON:0003103 ! results in formation of anatomical entity compound organ [Term] id: GO:0048646 @@ -86971,8 +86468,8 @@ def: "The multiplication or reproduction of smooth muscle cells, resulting in th synonym: "SMC proliferation" EXACT [] is_a: GO:0033002 ! muscle cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000192 ! smooth muscle cell -relationship: acts_on_population_of CL:0000192 ! smooth muscle cell +intersection_of: RO:0012003 CL:0000192 ! acts on population of smooth muscle cell +relationship: RO:0012003 CL:0000192 ! acts on population of smooth muscle cell [Term] id: GO:0048660 @@ -86982,8 +86479,8 @@ def: "Any process that modulates the frequency, rate or extent of smooth muscle synonym: "regulation of SMC proliferation" EXACT [] is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048659 ! smooth muscle cell proliferation -relationship: regulates GO:0048659 ! smooth muscle cell proliferation +intersection_of: RO:0002211 GO:0048659 ! regulates (processual) smooth muscle cell proliferation +relationship: RO:0002211 GO:0048659 ! regulates (processual) smooth muscle cell proliferation [Term] id: GO:0048661 @@ -86999,8 +86496,8 @@ synonym: "upregulation of smooth muscle cell proliferation" EXACT [] is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:0048660 ! regulation of smooth muscle cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048659 ! smooth muscle cell proliferation -relationship: positively_regulates GO:0048659 ! smooth muscle cell proliferation +intersection_of: RO:0002213 GO:0048659 ! positively regulates smooth muscle cell proliferation +relationship: RO:0002213 GO:0048659 ! positively regulates smooth muscle cell proliferation [Term] id: GO:0048662 @@ -87015,8 +86512,8 @@ synonym: "negative regulation of SMC proliferation" EXACT [] is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:0048660 ! regulation of smooth muscle cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048659 ! smooth muscle cell proliferation -relationship: negatively_regulates GO:0048659 ! smooth muscle cell proliferation +intersection_of: RO:0002212 GO:0048659 ! negatively regulates smooth muscle cell proliferation +relationship: RO:0002212 GO:0048659 ! negatively regulates smooth muscle cell proliferation [Term] id: GO:0048666 @@ -87025,9 +86522,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell." [GOC:dph] is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000540 ! neuron +intersection_of: RO:0002296 CL:0000540 ! results in development of neuron relationship: part_of GO:0030182 ! neuron differentiation -relationship: results_in_development_of CL:0000540 ! neuron +relationship: RO:0002296 CL:0000540 ! results in development of neuron [Term] id: GO:0048667 @@ -87057,9 +86554,9 @@ def: "The process in which the anatomical structures of the skeleton are generat synonym: "skeletal morphogenesis" EXACT [GOC:dph, GOC:tb] is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001434 ! skeletal system +intersection_of: RO:0002298 UBERON:0001434 ! results in morphogenesis of skeletal system relationship: part_of GO:0001501 ! skeletal system development -relationship: results_in_morphogenesis_of UBERON:0001434 ! skeletal system +relationship: RO:0002298 UBERON:0001434 ! results in morphogenesis of skeletal system [Term] id: GO:0048707 @@ -87076,9 +86573,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized features of an astrocyte. An astrocyte is the most abundant type of glial cell. Astrocytes provide support for neurons and regulate the environment in which they function." [GOC:vp, PMID:15139015] is_a: GO:0010001 ! glial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000127 ! astrocyte +intersection_of: RO:0002315 CL:0000127 ! results in acquisition of features of astrocyte relationship: part_of GO:0007417 ! central nervous system development -relationship: results_in_acquisition_of_features_of CL:0000127 ! astrocyte +relationship: RO:0002315 CL:0000127 ! results in acquisition of features of astrocyte [Term] id: GO:0048709 @@ -87087,9 +86584,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized features of an oligodendrocyte. An oligodendrocyte is a type of glial cell involved in myelinating the axons of neurons in the central nervous system." [GOC:vp, PMID:15139015] is_a: GO:0010001 ! glial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000128 ! oligodendrocyte +intersection_of: RO:0002315 CL:0000128 ! results in acquisition of features of oligodendrocyte relationship: part_of GO:0007417 ! central nervous system development -relationship: results_in_acquisition_of_features_of CL:0000128 ! oligodendrocyte +relationship: RO:0002315 CL:0000128 ! results in acquisition of features of oligodendrocyte [Term] id: GO:0048710 @@ -87098,8 +86595,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of astrocyte differentiation." [GOC:vp, PMID:15139015] is_a: GO:0045685 ! regulation of glial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048708 ! astrocyte differentiation -relationship: regulates GO:0048708 ! astrocyte differentiation +intersection_of: RO:0002211 GO:0048708 ! regulates (processual) astrocyte differentiation +relationship: RO:0002211 GO:0048708 ! regulates (processual) astrocyte differentiation [Term] id: GO:0048711 @@ -87114,8 +86611,8 @@ synonym: "upregulation of astrocyte differentiation" EXACT [] is_a: GO:0045687 ! positive regulation of glial cell differentiation is_a: GO:0048710 ! regulation of astrocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048708 ! astrocyte differentiation -relationship: positively_regulates GO:0048708 ! astrocyte differentiation +intersection_of: RO:0002213 GO:0048708 ! positively regulates astrocyte differentiation +relationship: RO:0002213 GO:0048708 ! positively regulates astrocyte differentiation [Term] id: GO:0048712 @@ -87129,8 +86626,8 @@ synonym: "inhibition of astrocyte differentiation" NARROW [] is_a: GO:0045686 ! negative regulation of glial cell differentiation is_a: GO:0048710 ! regulation of astrocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048708 ! astrocyte differentiation -relationship: negatively_regulates GO:0048708 ! astrocyte differentiation +intersection_of: RO:0002212 GO:0048708 ! negatively regulates astrocyte differentiation +relationship: RO:0002212 GO:0048708 ! negatively regulates astrocyte differentiation [Term] id: GO:0048713 @@ -87139,8 +86636,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of oligodendrocyte differentiation." [GOC:vp, PMID:15139015] is_a: GO:0045685 ! regulation of glial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048709 ! oligodendrocyte differentiation -relationship: regulates GO:0048709 ! oligodendrocyte differentiation +intersection_of: RO:0002211 GO:0048709 ! regulates (processual) oligodendrocyte differentiation +relationship: RO:0002211 GO:0048709 ! regulates (processual) oligodendrocyte differentiation [Term] id: GO:0048714 @@ -87155,8 +86652,8 @@ synonym: "upregulation of oligodendrocyte differentiation" EXACT [] is_a: GO:0045687 ! positive regulation of glial cell differentiation is_a: GO:0048713 ! regulation of oligodendrocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048709 ! oligodendrocyte differentiation -relationship: positively_regulates GO:0048709 ! oligodendrocyte differentiation +intersection_of: RO:0002213 GO:0048709 ! positively regulates oligodendrocyte differentiation +relationship: RO:0002213 GO:0048709 ! positively regulates oligodendrocyte differentiation [Term] id: GO:0048715 @@ -87170,8 +86667,8 @@ synonym: "inhibition of oligodendrocyte differentiation" NARROW [] is_a: GO:0045686 ! negative regulation of glial cell differentiation is_a: GO:0048713 ! regulation of oligodendrocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048709 ! oligodendrocyte differentiation -relationship: negatively_regulates GO:0048709 ! oligodendrocyte differentiation +intersection_of: RO:0002212 GO:0048709 ! negatively regulates oligodendrocyte differentiation +relationship: RO:0002212 GO:0048709 ! negatively regulates oligodendrocyte differentiation [Term] id: GO:0048729 @@ -87180,9 +86677,9 @@ namespace: biological_process def: "The process in which the anatomical structures of a tissue are generated and organized." [GOC:dph, GOC:jid] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000479 ! tissue +intersection_of: RO:0002298 UBERON:0000479 ! results in morphogenesis of tissue relationship: part_of GO:0009888 ! tissue development -relationship: results_in_morphogenesis_of UBERON:0000479 ! tissue +relationship: RO:0002298 UBERON:0000479 ! results in morphogenesis of tissue [Term] id: GO:0048730 @@ -87192,9 +86689,9 @@ def: "The process in which the anatomical structures of the epidermis are genera synonym: "hypodermis morphogenesis" RELATED [GOC:kmv, GOC:rk] is_a: GO:0002009 ! morphogenesis of an epithelium intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0007376 ! outer epithelium +intersection_of: RO:0002298 UBERON:0007376 ! results in morphogenesis of outer epithelium relationship: part_of GO:0008544 ! epidermis development -relationship: results_in_morphogenesis_of UBERON:0007376 ! outer epithelium +relationship: RO:0002298 UBERON:0007376 ! results in morphogenesis of outer epithelium [Term] id: GO:0048731 @@ -87204,9 +86701,9 @@ def: "The process whose specific outcome is the progression of an organismal sys subset: goslim_mouse is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000467 ! anatomical system +intersection_of: RO:0002296 UBERON:0000467 ! results in development of anatomical system relationship: part_of GO:0007275 ! multicellular organism development -relationship: results_in_development_of UBERON:0000467 ! anatomical system +relationship: RO:0002296 UBERON:0000467 ! results in development of anatomical system [Term] id: GO:0048732 @@ -87215,8 +86712,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a gland over time, from its formation to the mature structure. A gland is an organ specialised for secretion." [GOC:jid] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002530 ! gland -relationship: results_in_development_of UBERON:0002530 ! gland +intersection_of: RO:0002296 UBERON:0002530 ! results in development of gland +relationship: RO:0002296 UBERON:0002530 ! results in development of gland [Term] id: GO:0048733 @@ -87225,9 +86722,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the sebaceous gland over time, from its formation to the mature structure." [GOC:jid] is_a: GO:0048732 ! gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001821 ! sebaceous gland +intersection_of: RO:0002296 UBERON:0001821 ! results in development of sebaceous gland relationship: part_of GO:0043588 ! skin development -relationship: results_in_development_of UBERON:0001821 ! sebaceous gland +relationship: RO:0002296 UBERON:0001821 ! results in development of sebaceous gland [Term] id: GO:0048735 @@ -87237,10 +86734,10 @@ def: "The process in which the anatomical structures of a haltere are generated is_a: GO:0035114 ! imaginal disc-derived appendage morphogenesis is_a: GO:0035120 ! post-embryonic appendage morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000987 ! haltere +intersection_of: RO:0002298 UBERON:0000987 ! results in morphogenesis of haltere relationship: part_of GO:0007481 ! haltere disc morphogenesis relationship: part_of GO:0007482 ! haltere development -relationship: results_in_morphogenesis_of UBERON:0000987 ! haltere +relationship: RO:0002298 UBERON:0000987 ! results in morphogenesis of haltere [Term] id: GO:0048736 @@ -87249,9 +86746,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of an appendage over time, from its formation to the mature structure. An appendage is an organ or part that is attached to the trunk of an organism, such as a limb or a branch." [GOC:jid, GOC:rc] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000026 ! appendage +intersection_of: RO:0002296 UBERON:0000026 ! results in development of appendage relationship: part_of GO:0007275 ! multicellular organism development -relationship: results_in_development_of UBERON:0000026 ! appendage +relationship: RO:0002296 UBERON:0000026 ! results in development of appendage [Term] id: GO:0048737 @@ -87260,7 +86757,7 @@ namespace: biological_process def: "The process whose specific outcome is the progression of an appendage over time, from its formation in the imaginal disc to the mature structure. An appendage is an organ or part that is attached to the trunk of an organism." [GOC:jid, GOC:mtg_sensu, GOC:rc] is_a: GO:0048736 ! appendage development relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda [Term] id: GO:0048738 @@ -87270,9 +86767,9 @@ def: "The process whose specific outcome is the progression of cardiac muscle ov synonym: "heart muscle development" EXACT [] is_a: GO:0014706 ! striated muscle tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001133 ! cardiac muscle tissue +intersection_of: RO:0002296 UBERON:0001133 ! results in development of cardiac muscle tissue relationship: part_of GO:0007507 ! heart development -relationship: results_in_development_of UBERON:0001133 ! cardiac muscle tissue +relationship: RO:0002296 UBERON:0001133 ! results in development of cardiac muscle tissue [Term] id: GO:0048741 @@ -87284,9 +86781,9 @@ synonym: "skeletal myofiber development" EXACT [] synonym: "skeletal myofibre development" EXACT [] is_a: GO:0014904 ! myotube cell development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of CL:0008002 ! skeletal muscle fiber +intersection_of: RO:0002296 CL:0008002 ! results in development of skeletal muscle fiber relationship: part_of GO:0007519 ! skeletal muscle tissue development -relationship: results_in_development_of CL:0008002 ! skeletal muscle fiber +relationship: RO:0002296 CL:0008002 ! results in development of skeletal muscle fiber [Term] id: GO:0048742 @@ -87299,9 +86796,9 @@ synonym: "regulation of skeletal myofibre development" EXACT [] is_a: GO:0010830 ! regulation of myotube differentiation is_a: GO:0060284 ! regulation of cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048741 ! skeletal muscle fiber development -relationship: regulates GO:0014902 ! myotube differentiation -relationship: regulates GO:0048741 ! skeletal muscle fiber development +intersection_of: RO:0002211 GO:0048741 ! regulates (processual) skeletal muscle fiber development +relationship: RO:0002211 GO:0014902 ! regulates (processual) myotube differentiation +relationship: RO:0002211 GO:0048741 ! regulates (processual) skeletal muscle fiber development [Term] id: GO:0048743 @@ -87321,8 +86818,8 @@ is_a: GO:0048643 ! positive regulation of skeletal muscle tissue development is_a: GO:0048742 ! regulation of skeletal muscle fiber development is_a: GO:0051155 ! positive regulation of striated muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048741 ! skeletal muscle fiber development -relationship: positively_regulates GO:0048741 ! skeletal muscle fiber development +intersection_of: RO:0002213 GO:0048741 ! positively regulates skeletal muscle fiber development +relationship: RO:0002213 GO:0048741 ! positively regulates skeletal muscle fiber development [Term] id: GO:0048744 @@ -87340,8 +86837,8 @@ is_a: GO:0010721 ! negative regulation of cell development is_a: GO:0048742 ! regulation of skeletal muscle fiber development is_a: GO:0051154 ! negative regulation of striated muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048741 ! skeletal muscle fiber development -relationship: negatively_regulates GO:0048741 ! skeletal muscle fiber development +intersection_of: RO:0002212 GO:0048741 ! negatively regulates skeletal muscle fiber development +relationship: RO:0002212 GO:0048741 ! negatively regulates skeletal muscle fiber development [Term] id: GO:0048745 @@ -87350,8 +86847,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of smooth muscle over time, from its formation to the mature structure." [GOC:dph, GOC:jid, GOC:lm] is_a: GO:0060537 ! muscle tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001135 ! smooth muscle tissue -relationship: results_in_development_of UBERON:0001135 ! smooth muscle tissue +intersection_of: RO:0002296 UBERON:0001135 ! results in development of smooth muscle tissue +relationship: RO:0002296 UBERON:0001135 ! results in development of smooth muscle tissue [Term] id: GO:0048749 @@ -87362,8 +86859,8 @@ def: "The process whose specific outcome is the progression of the compound eye synonym: "insect-type retina development" EXACT [PMID:11735386] is_a: GO:0001654 ! eye development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000018 ! compound eye -relationship: results_in_development_of UBERON:0000018 ! compound eye +intersection_of: RO:0002296 UBERON:0000018 ! results in development of compound eye +relationship: RO:0002296 UBERON:0000018 ! results in development of compound eye [Term] id: GO:0048750 @@ -87372,14 +86869,14 @@ namespace: biological_process def: "The process in which the anatomical structures of the compound eye corneal lens are generated and organized." [GOC:jid] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: occurs_in UBERON:0000018 ! compound eye -intersection_of: results_in_morphogenesis_of UBERON:0000207 ! compound eye corneal lens +intersection_of: BFO:0000066 UBERON:0000018 ! occurs in compound eye +intersection_of: RO:0002298 UBERON:0000207 ! results in morphogenesis of compound eye corneal lens +relationship: BFO:0000066 UBERON:0000018 ! occurs in compound eye relationship: in_taxon NCBITaxon:6656 {all_only="true"} ! Arthropoda -relationship: occurs_in UBERON:0000018 ! compound eye -relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of GO:0001745 ! compound eye morphogenesis relationship: part_of GO:0048058 ! compound eye corneal lens development -relationship: results_in_morphogenesis_of UBERON:0000207 ! compound eye corneal lens +relationship: RO:0002160 NCBITaxon:6656 ! only in taxon Arthropoda +relationship: RO:0002298 UBERON:0000207 ! results in morphogenesis of compound eye corneal lens [Term] id: GO:0048752 @@ -87390,10 +86887,10 @@ synonym: "embryonic semicircular canal morphogenesis" EXACT [] is_a: GO:0035239 ! tube morphogenesis is_a: GO:0048598 ! embryonic morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001840 ! semicircular canal +intersection_of: RO:0002298 UBERON:0001840 ! results in morphogenesis of semicircular canal relationship: part_of GO:0042472 ! inner ear morphogenesis relationship: part_of GO:0060872 ! semicircular canal development -relationship: results_in_morphogenesis_of UBERON:0001840 ! semicircular canal +relationship: RO:0002298 UBERON:0001840 ! results in morphogenesis of semicircular canal [Term] id: GO:0048753 @@ -87405,9 +86902,9 @@ synonym: "pigment granule organisation" EXACT [] synonym: "pigment granule organization and biogenesis" RELATED [GOC:mah] is_a: GO:0016050 ! vesicle organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0048770 ! pigment granule +intersection_of: RO:0002592 GO:0048770 ! results in organization of pigment granule relationship: part_of GO:0033059 ! cellular pigmentation -relationship: results_in_organization_of GO:0048770 ! pigment granule +relationship: RO:0002592 GO:0048770 ! results in organization of pigment granule [Term] id: GO:0048754 @@ -87418,9 +86915,9 @@ synonym: "tubulogenesis" RELATED [GOC:dph, GOC:tb] is_a: GO:0035239 ! tube morphogenesis is_a: GO:0061138 ! morphogenesis of a branching epithelium intersection_of: GO:0001763 ! morphogenesis of a branching structure -intersection_of: results_in_morphogenesis_of UBERON:0000025 ! tube +intersection_of: RO:0002298 UBERON:0000025 ! results in morphogenesis of tube relationship: part_of GO:0060562 ! epithelial tube morphogenesis -relationship: results_in_morphogenesis_of UBERON:0000025 ! tube +relationship: RO:0002298 UBERON:0000025 ! results in morphogenesis of tube [Term] id: GO:0048755 @@ -87429,9 +86926,9 @@ namespace: biological_process def: "The process in which the anatomical structures of branches in a nerve are generated and organized. This term refers to an anatomical structure (nerve) not a cell (neuron)." [GOC:dgh, GOC:dph, GOC:jid] is_a: GO:0001763 ! morphogenesis of a branching structure intersection_of: GO:0001763 ! morphogenesis of a branching structure -intersection_of: results_in_morphogenesis_of UBERON:0001021 ! nerve +intersection_of: RO:0002298 UBERON:0001021 ! results in morphogenesis of nerve relationship: part_of GO:0007399 ! nervous system development -relationship: results_in_morphogenesis_of UBERON:0001021 ! nerve +relationship: RO:0002298 UBERON:0001021 ! results in morphogenesis of nerve [Term] id: GO:0048762 @@ -87440,9 +86937,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a mesenchymal cell. A mesenchymal cell is a loosely associated cell that is part of the connective tissue in an organism. Mesenchymal cells give rise to more mature connective tissue cell types." [GOC:dph, GOC:jid] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0008019 ! mesenchymal cell +intersection_of: RO:0002315 CL:0008019 ! results in acquisition of features of mesenchymal cell relationship: part_of GO:0060485 ! mesenchyme development -relationship: results_in_acquisition_of_features_of CL:0008019 ! mesenchymal cell +relationship: RO:0002315 CL:0008019 ! results in acquisition of features of mesenchymal cell [Term] id: GO:0048770 @@ -87468,8 +86965,8 @@ def: "The process in which a relatively unspecialized cell acquires the speciali synonym: "erythrophore cell differentiation" EXACT [] is_a: GO:0050931 ! pigment cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000574 ! erythrophore -relationship: results_in_acquisition_of_features_of CL:0000574 ! erythrophore +intersection_of: RO:0002315 CL:0000574 ! results in acquisition of features of erythrophore +relationship: RO:0002315 CL:0000574 ! results in acquisition of features of erythrophore [Term] id: GO:0048778 @@ -87478,8 +86975,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of erythrophore differentiation." [GOC:mh] is_a: GO:0050932 ! regulation of pigment cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048773 ! erythrophore differentiation -relationship: regulates GO:0048773 ! erythrophore differentiation +intersection_of: RO:0002211 GO:0048773 ! regulates (processual) erythrophore differentiation +relationship: RO:0002211 GO:0048773 ! regulates (processual) erythrophore differentiation [Term] id: GO:0048779 @@ -87493,8 +86990,8 @@ synonym: "inhibition of erythrophore differentiation" NARROW [] is_a: GO:0048778 ! regulation of erythrophore differentiation is_a: GO:0050941 ! negative regulation of pigment cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048773 ! erythrophore differentiation -relationship: negatively_regulates GO:0048773 ! erythrophore differentiation +intersection_of: RO:0002212 GO:0048773 ! negatively regulates erythrophore differentiation +relationship: RO:0002212 GO:0048773 ! negatively regulates erythrophore differentiation [Term] id: GO:0048780 @@ -87509,8 +87006,8 @@ synonym: "upregulation of erythrophore differentiation" EXACT [] is_a: GO:0048778 ! regulation of erythrophore differentiation is_a: GO:0050942 ! positive regulation of pigment cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048773 ! erythrophore differentiation -relationship: positively_regulates GO:0048773 ! erythrophore differentiation +intersection_of: RO:0002213 GO:0048773 ! positively regulates erythrophore differentiation +relationship: RO:0002213 GO:0048773 ! positively regulates erythrophore differentiation [Term] id: GO:0048785 @@ -87519,8 +87016,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the hatching gland over time, from its formation to the mature structure. The cells of the hatching gland contain enzymes responsible for solubilization of the egg chorion, facilitating the hatching process." [GOC:bf, GOC:dh, GOC:jid] is_a: GO:0048732 ! gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002538 ! hatching gland -relationship: results_in_development_of UBERON:0002538 ! hatching gland +intersection_of: RO:0002296 UBERON:0002538 ! results in development of hatching gland +relationship: RO:0002296 UBERON:0002538 ! results in development of hatching gland [Term] id: GO:0048786 @@ -87532,7 +87029,7 @@ synonym: "pre-synaptic active zone" EXACT [] synonym: "pre-synaptic active zone component" NARROW [NIF_Subcellular:sao1911631652] synonym: "presynaptic specialization" EXACT [] xref: NIF_Subcellular:sao792027222 -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of GO:0045202 ! synapse relationship: part_of GO:0098793 ! presynapse @@ -87571,8 +87068,8 @@ def: "The process whose specific outcome is the progression of the pronephros ov synonym: "pronephric kidney development" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0001822 ! kidney development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002120 ! pronephros -relationship: results_in_development_of UBERON:0002120 ! pronephros +intersection_of: RO:0002296 UBERON:0002120 ! results in development of pronephros +relationship: RO:0002296 UBERON:0002120 ! results in development of pronephros [Term] id: GO:0048794 @@ -87582,8 +87079,8 @@ def: "The process whose specific outcome is the progression of the swim bladder synonym: "gas bladder development" EXACT [] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006860 ! swim bladder -relationship: results_in_development_of UBERON:0006860 ! swim bladder +intersection_of: RO:0002296 UBERON:0006860 ! results in development of swim bladder +relationship: RO:0002296 UBERON:0006860 ! results in development of swim bladder [Term] id: GO:0048795 @@ -87593,9 +87090,9 @@ def: "The process in which the anatomical structure of the swim bladder is gener synonym: "gas bladder morphogenesis" EXACT [] is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0006860 ! swim bladder +intersection_of: RO:0002298 UBERON:0006860 ! results in morphogenesis of swim bladder relationship: part_of GO:0048794 ! swim bladder development -relationship: results_in_morphogenesis_of UBERON:0006860 ! swim bladder +relationship: RO:0002298 UBERON:0006860 ! results in morphogenesis of swim bladder [Term] id: GO:0048796 @@ -87605,9 +87102,9 @@ def: "A developmental process, independent of morphogenetic (shape) change, that synonym: "gas bladder maturation" EXACT [] is_a: GO:0048799 ! animal organ maturation intersection_of: GO:0071695 ! anatomical structure maturation -intersection_of: results_in_maturation_of UBERON:0006860 ! swim bladder +intersection_of: RO:0002299 UBERON:0006860 ! results in maturation of swim bladder relationship: part_of GO:0048794 ! swim bladder development -relationship: results_in_maturation_of UBERON:0006860 ! swim bladder +relationship: RO:0002299 UBERON:0006860 ! results in maturation of swim bladder [Term] id: GO:0048797 @@ -87618,9 +87115,9 @@ synonym: "gas bladder biosynthesis" EXACT [] synonym: "gas bladder formation" EXACT [] is_a: GO:0048645 ! animal organ formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0006860 ! swim bladder +intersection_of: RO:0002297 UBERON:0006860 ! results in formation of anatomical entity swim bladder relationship: part_of GO:0048795 ! swim bladder morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0006860 ! swim bladder +relationship: RO:0002297 UBERON:0006860 ! results in formation of anatomical entity swim bladder [Term] id: GO:0048799 @@ -87629,9 +87126,9 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for an animal organ to attain its fully functional state. An organ is a tissue or set of tissues that work together to perform a specific function or functions." [GOC:curators] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0000062 ! organ +intersection_of: RO:0002299 UBERON:0000062 ! results in maturation of organ relationship: part_of GO:0048513 ! animal organ development -relationship: results_in_maturation_of UBERON:0000062 ! organ +relationship: RO:0002299 UBERON:0000062 ! results in maturation of organ [Term] id: GO:0048800 @@ -87641,10 +87138,10 @@ def: "The process in which the anatomical structures of the antenna are generate is_a: GO:0009886 ! post-embryonic animal morphogenesis is_a: GO:0035107 ! appendage morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000972 ! antenna +intersection_of: RO:0002298 UBERON:0000972 ! results in morphogenesis of antenna relationship: part_of GO:0007455 ! eye-antennal disc morphogenesis relationship: part_of GO:0007469 ! antennal development -relationship: results_in_morphogenesis_of UBERON:0000972 ! antenna +relationship: RO:0002298 UBERON:0000972 ! results in morphogenesis of antenna [Term] id: GO:0048806 @@ -87665,9 +87162,9 @@ synonym: "male genital morphogenesis" RELATED [] is_a: GO:0035112 ! genitalia morphogenesis is_a: GO:0090598 ! male anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000079 ! male reproductive system +intersection_of: RO:0002298 UBERON:0000079 ! results in morphogenesis of male reproductive system relationship: part_of GO:0030539 ! male genitalia development -relationship: results_in_morphogenesis_of UBERON:0000079 ! male reproductive system +relationship: RO:0002298 UBERON:0000079 ! results in morphogenesis of male reproductive system [Term] id: GO:0048812 @@ -87680,9 +87177,9 @@ synonym: "neurite growth" NARROW [] synonym: "neurite morphogenesis" RELATED [GOC:dph, GOC:tb] is_a: GO:0120039 ! plasma membrane bounded cell projection morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of GO:0043005 ! neuron projection +intersection_of: RO:0002298 GO:0043005 ! results in morphogenesis of neuron projection relationship: part_of GO:0031175 ! neuron projection development -relationship: results_in_morphogenesis_of GO:0043005 ! neuron projection +relationship: RO:0002298 GO:0043005 ! results in morphogenesis of neuron projection [Term] id: GO:0048813 @@ -87691,10 +87188,10 @@ namespace: biological_process def: "The process in which the anatomical structures of a dendrite are generated and organized." [GOC:aruk, GOC:bc, GOC:jl, ISBN:0198506732, PMID:22683681] is_a: GO:0048812 ! neuron projection morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of GO:0030425 ! dendrite +intersection_of: RO:0002298 GO:0030425 ! results in morphogenesis of dendrite relationship: part_of GO:0016358 ! dendrite development relationship: part_of GO:0048667 ! cell morphogenesis involved in neuron differentiation -relationship: results_in_morphogenesis_of GO:0030425 ! dendrite +relationship: RO:0002298 GO:0030425 ! results in morphogenesis of dendrite [Term] id: GO:0048814 @@ -87704,9 +87201,9 @@ def: "Any process that modulates the frequency, rate or extent of dendrite morph is_a: GO:0022603 ! regulation of anatomical structure morphogenesis is_a: GO:0050773 ! regulation of dendrite development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048813 ! dendrite morphogenesis -relationship: regulates GO:0016358 ! dendrite development -relationship: regulates GO:0048813 ! dendrite morphogenesis +intersection_of: RO:0002211 GO:0048813 ! regulates (processual) dendrite morphogenesis +relationship: RO:0002211 GO:0016358 ! regulates (processual) dendrite development +relationship: RO:0002211 GO:0048813 ! regulates (processual) dendrite morphogenesis [Term] id: GO:0048816 @@ -87716,10 +87213,10 @@ def: "The process in which the anatomical structures of the ocellus are generate is_a: GO:0009886 ! post-embryonic animal morphogenesis is_a: GO:0090596 ! sensory organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003161 ! dorsal ocellus +intersection_of: RO:0002298 UBERON:0003161 ! results in morphogenesis of dorsal ocellus relationship: part_of GO:0007455 ! eye-antennal disc morphogenesis relationship: part_of GO:0008056 ! ocellus development -relationship: results_in_morphogenesis_of UBERON:0003161 ! dorsal ocellus +relationship: RO:0002298 UBERON:0003161 ! results in morphogenesis of dorsal ocellus [Term] id: GO:0048817 @@ -87733,8 +87230,8 @@ synonym: "inhibition of hair follicle maturation" NARROW [] is_a: GO:0048819 ! regulation of hair follicle maturation is_a: GO:0051799 ! negative regulation of hair follicle development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048820 ! hair follicle maturation -relationship: negatively_regulates GO:0048820 ! hair follicle maturation +intersection_of: RO:0002212 GO:0048820 ! negatively regulates hair follicle maturation +relationship: RO:0002212 GO:0048820 ! negatively regulates hair follicle maturation [Term] id: GO:0048818 @@ -87749,8 +87246,8 @@ synonym: "upregulation of hair follicle maturation" EXACT [] is_a: GO:0048819 ! regulation of hair follicle maturation is_a: GO:0051798 ! positive regulation of hair follicle development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048820 ! hair follicle maturation -relationship: positively_regulates GO:0048820 ! hair follicle maturation +intersection_of: RO:0002213 GO:0048820 ! positively regulates hair follicle maturation +relationship: RO:0002213 GO:0048820 ! positively regulates hair follicle maturation [Term] id: GO:0048819 @@ -87760,8 +87257,8 @@ def: "Any process that modulates the frequency, rate or extent of hair follicle is_a: GO:0050793 ! regulation of developmental process is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048820 ! hair follicle maturation -relationship: regulates GO:0048820 ! hair follicle maturation +intersection_of: RO:0002211 GO:0048820 ! regulates (processual) hair follicle maturation +relationship: RO:0002211 GO:0048820 ! regulates (processual) hair follicle maturation [Term] id: GO:0048820 @@ -87771,9 +87268,9 @@ def: "A developmental process, independent of morphogenetic (shape) change, that is_a: GO:0022405 ! hair cycle process is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0002073 ! hair follicle +intersection_of: RO:0002299 UBERON:0002073 ! results in maturation of hair follicle relationship: part_of GO:0001942 ! hair follicle development -relationship: results_in_maturation_of UBERON:0002073 ! hair follicle +relationship: RO:0002299 UBERON:0002073 ! results in maturation of hair follicle [Term] id: GO:0048821 @@ -87784,9 +87281,9 @@ synonym: "RBC development" EXACT [CL:0000232] synonym: "red blood cell development" EXACT [CL:0000232] is_a: GO:0061515 ! myeloid cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000232 ! erythrocyte +intersection_of: RO:0002296 CL:0000232 ! results in development of erythrocyte relationship: part_of GO:0030218 ! erythrocyte differentiation -relationship: results_in_development_of CL:0000232 ! erythrocyte +relationship: RO:0002296 CL:0000232 ! results in development of erythrocyte [Term] id: GO:0048822 @@ -87797,9 +87294,9 @@ synonym: "enucleate RBC development" EXACT [CL:0000232] synonym: "enucleate red blood cell development" EXACT [CL:0000232] is_a: GO:0048821 ! erythrocyte development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000595 ! enucleate erythrocyte +intersection_of: RO:0002296 CL:0000595 ! results in development of enucleate erythrocyte relationship: part_of GO:0043353 ! enucleate erythrocyte differentiation -relationship: results_in_development_of CL:0000595 ! enucleate erythrocyte +relationship: RO:0002296 CL:0000595 ! results in development of enucleate erythrocyte [Term] id: GO:0048823 @@ -87810,9 +87307,9 @@ synonym: "nucleate RBC development" EXACT [CL:0000232] synonym: "nucleate red blood cell development" EXACT [CL:0000232] is_a: GO:0048821 ! erythrocyte development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000562 ! nucleate erythrocyte +intersection_of: RO:0002296 CL:0000562 ! results in development of nucleate erythrocyte relationship: part_of GO:0043363 ! nucleate erythrocyte differentiation -relationship: results_in_development_of CL:0000562 ! nucleate erythrocyte +relationship: RO:0002296 CL:0000562 ! results in development of nucleate erythrocyte [Term] id: GO:0048839 @@ -87821,9 +87318,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure." [GOC:sr] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001846 ! internal ear +intersection_of: RO:0002296 UBERON:0001846 ! results in development of internal ear relationship: part_of GO:0043583 ! ear development -relationship: results_in_development_of UBERON:0001846 ! internal ear +relationship: RO:0002296 UBERON:0001846 ! results in development of internal ear [Term] id: GO:0048840 @@ -87832,11 +87329,11 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the otolith over time, from its formation to the mature structure." [GOC:sr] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002280 ! otolith +intersection_of: RO:0002296 UBERON:0002280 ! results in development of otolith relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of GO:0048839 ! inner ear development -relationship: results_in_development_of UBERON:0002280 ! otolith +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata +relationship: RO:0002296 UBERON:0002280 ! results in development of otolith [Term] id: GO:0048844 @@ -87847,9 +87344,9 @@ synonym: "arterial morphogenesis" EXACT [] synonym: "arteriogenesis" EXACT [GOC:mtg_heart] is_a: GO:0048514 ! blood vessel morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001637 ! artery +intersection_of: RO:0002298 UBERON:0001637 ! results in morphogenesis of artery relationship: part_of GO:0060840 ! artery development -relationship: results_in_morphogenesis_of UBERON:0001637 ! artery +relationship: RO:0002298 UBERON:0001637 ! results in morphogenesis of artery [Term] id: GO:0048845 @@ -87860,9 +87357,9 @@ synonym: "vein morphogenesis" BROAD [] synonym: "venous morphogenesis" EXACT [] is_a: GO:0048514 ! blood vessel morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001638 ! vein +intersection_of: RO:0002298 UBERON:0001638 ! results in morphogenesis of vein relationship: part_of GO:0060841 ! venous blood vessel development -relationship: results_in_morphogenesis_of UBERON:0001638 ! vein +relationship: RO:0002298 UBERON:0001638 ! results in morphogenesis of vein [Term] id: GO:0048847 @@ -87877,9 +87374,9 @@ synonym: "anterior pituitary gland biosynthesis" EXACT [] synonym: "anterior pituitary gland formation" EXACT [] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002196 ! adenohypophysis +intersection_of: RO:0002297 UBERON:0002196 ! results in formation of anatomical entity adenohypophysis relationship: part_of GO:0048855 ! adenohypophysis morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002196 ! adenohypophysis +relationship: RO:0002297 UBERON:0002196 ! results in formation of anatomical entity adenohypophysis [Term] id: GO:0048848 @@ -87891,10 +87388,10 @@ synonym: "posterior pituitary gland morphogenesis" EXACT [] synonym: "posterior pituitary morphogenesis" EXACT [] is_a: GO:0022612 ! gland morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002198 ! neurohypophysis +intersection_of: RO:0002298 UBERON:0002198 ! results in morphogenesis of neurohypophysis relationship: part_of GO:0021985 ! neurohypophysis development relationship: part_of GO:0048850 ! hypophysis morphogenesis -relationship: results_in_morphogenesis_of UBERON:0002198 ! neurohypophysis +relationship: RO:0002298 UBERON:0002198 ! results in morphogenesis of neurohypophysis [Term] id: GO:0048849 @@ -87909,9 +87406,9 @@ synonym: "posterior pituitary gland biosynthesis" EXACT [] synonym: "posterior pituitary gland formation" EXACT [] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002198 ! neurohypophysis +intersection_of: RO:0002297 UBERON:0002198 ! results in formation of anatomical entity neurohypophysis relationship: part_of GO:0048848 ! neurohypophysis morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002198 ! neurohypophysis +relationship: RO:0002297 UBERON:0002198 ! results in formation of anatomical entity neurohypophysis [Term] id: GO:0048850 @@ -87921,10 +87418,10 @@ def: "The process in which the anatomical structures of the hypophysis are gener synonym: "pituitary gland morphogenesis" EXACT [] is_a: GO:0022612 ! gland morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000007 ! pituitary gland +intersection_of: RO:0002298 UBERON:0000007 ! results in morphogenesis of pituitary gland relationship: part_of GO:0021983 ! pituitary gland development relationship: part_of GO:0048852 ! diencephalon morphogenesis -relationship: results_in_morphogenesis_of UBERON:0000007 ! pituitary gland +relationship: RO:0002298 UBERON:0000007 ! results in morphogenesis of pituitary gland [Term] id: GO:0048851 @@ -87936,9 +87433,9 @@ synonym: "pituitary gland biosynthesis" EXACT [] synonym: "pituitary gland formation" EXACT [] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000007 ! pituitary gland +intersection_of: RO:0002297 UBERON:0000007 ! results in formation of anatomical entity pituitary gland relationship: part_of GO:0048850 ! hypophysis morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0000007 ! pituitary gland +relationship: RO:0002297 UBERON:0000007 ! results in formation of anatomical entity pituitary gland [Term] id: GO:0048852 @@ -87947,10 +87444,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the diencephalon are generated and organized. The diencephalon is the paired caudal parts of the prosencephalon from which the thalamus, hypothalamus, epithalamus and subthalamus are derived; these regions regulate autonomic, visceral and endocrine function, and process information directed to the cerebral cortex." [GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001894 ! diencephalon +intersection_of: RO:0002298 UBERON:0001894 ! results in morphogenesis of diencephalon relationship: part_of GO:0021536 ! diencephalon development relationship: part_of GO:0048853 ! forebrain morphogenesis -relationship: results_in_morphogenesis_of UBERON:0001894 ! diencephalon +relationship: RO:0002298 UBERON:0001894 ! results in morphogenesis of diencephalon [Term] id: GO:0048853 @@ -87960,10 +87457,10 @@ def: "The process in which the anatomical structures of the forebrain are genera synonym: "prosencephalon morphogenesis" EXACT [] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001890 ! forebrain +intersection_of: RO:0002298 UBERON:0001890 ! results in morphogenesis of forebrain relationship: part_of GO:0030900 ! forebrain development relationship: part_of GO:0048854 ! brain morphogenesis -relationship: results_in_morphogenesis_of UBERON:0001890 ! forebrain +relationship: RO:0002298 UBERON:0001890 ! results in morphogenesis of forebrain [Term] id: GO:0048854 @@ -87972,9 +87469,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the brain are generated and organized. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.)." [GOC:dgh, GOC:jid] is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000955 ! brain +intersection_of: RO:0002298 UBERON:0000955 ! results in morphogenesis of brain relationship: part_of GO:0007420 ! brain development -relationship: results_in_morphogenesis_of UBERON:0000955 ! brain +relationship: RO:0002298 UBERON:0000955 ! results in morphogenesis of brain [Term] id: GO:0048855 @@ -87986,10 +87483,10 @@ synonym: "anterior pituitary gland morphogenesis" EXACT [] synonym: "anterior pituitary morphogenesis" EXACT [] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002196 ! adenohypophysis +intersection_of: RO:0002298 UBERON:0002196 ! results in morphogenesis of adenohypophysis relationship: part_of GO:0021984 ! adenohypophysis development relationship: part_of GO:0048850 ! hypophysis morphogenesis -relationship: results_in_morphogenesis_of UBERON:0002196 ! adenohypophysis +relationship: RO:0002298 UBERON:0002196 ! results in morphogenesis of adenohypophysis [Term] id: GO:0048856 @@ -88004,8 +87501,8 @@ subset: goslim_plant_ribbon synonym: "development of an anatomical structure" EXACT [] is_a: GO:0032502 ! developmental process intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of UBERON:0000061 ! anatomical structure -relationship: results_in_development_of UBERON:0000061 ! anatomical structure +intersection_of: RO:0002296 UBERON:0000061 ! results in development of anatomical structure +relationship: RO:0002296 UBERON:0000061 ! results in development of anatomical structure property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI [Term] @@ -88015,8 +87512,8 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of a neural nucleus from its initial condition to its mature state. A neural nucleus is an anatomical structure consisting of a discrete aggregate of neuronal soma." [GO_REF:0000021] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000125 ! neural nucleus -relationship: results_in_development_of UBERON:0000125 ! neural nucleus +intersection_of: RO:0002296 UBERON:0000125 ! results in development of neural nucleus +relationship: RO:0002296 UBERON:0000125 ! results in development of neural nucleus [Term] id: GO:0048858 @@ -88026,9 +87523,9 @@ def: "The process in which the anatomical structures of a cell projection are ge is_a: GO:0009653 ! anatomical structure morphogenesis is_a: GO:0030030 ! cell projection organization intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of GO:0042995 ! cell projection +intersection_of: RO:0002298 GO:0042995 ! results in morphogenesis of cell projection relationship: part_of GO:0000902 ! cell morphogenesis -relationship: results_in_morphogenesis_of GO:0042995 ! cell projection +relationship: RO:0002298 GO:0042995 ! results in morphogenesis of cell projection [Term] id: GO:0048859 @@ -88037,8 +87534,8 @@ namespace: biological_process def: "The process in which the limits of an anatomical structure are generated. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome." [GO_REF:0000021] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0007651 ! anatomical junction -relationship: results_in_formation_of_anatomical_entity UBERON:0007651 ! anatomical junction +intersection_of: RO:0002297 UBERON:0007651 ! results in formation of anatomical entity anatomical junction +relationship: RO:0002297 UBERON:0007651 ! results in formation of anatomical entity anatomical junction [Term] id: GO:0048860 @@ -88047,8 +87544,8 @@ namespace: biological_process def: "The process resulting in the physical partitioning and separation of a glioblast into daughter cells." [GOC:devbiol] is_a: GO:0051301 ! cell division intersection_of: GO:0051301 ! cell division -intersection_of: has_primary_input CL:0000030 ! glioblast -relationship: has_primary_input CL:0000030 ! glioblast +intersection_of: RO:0004009 CL:0000030 ! has primary input glioblast +relationship: RO:0004009 CL:0000030 ! has primary input glioblast [Term] id: GO:0048863 @@ -88058,9 +87555,9 @@ def: "The process in which a relatively unspecialized cell acquires specialized xref: Wikipedia:Stem_cell_differentiation is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000034 ! stem cell +intersection_of: RO:0002315 CL:0000034 ! results in acquisition of features of stem cell relationship: never_in_taxon NCBITaxon:4751 ! Fungi -relationship: results_in_acquisition_of_features_of CL:0000034 ! stem cell +relationship: RO:0002315 CL:0000034 ! results in acquisition of features of stem cell [Term] id: GO:0048864 @@ -88069,9 +87566,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the stem cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to its specific fate." [CL:0000034, GOC:isa_complete] is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000034 ! stem cell +intersection_of: RO:0002296 CL:0000034 ! results in development of stem cell relationship: part_of GO:0048863 ! stem cell differentiation -relationship: results_in_development_of CL:0000034 ! stem cell +relationship: RO:0002296 CL:0000034 ! results in development of stem cell [Term] id: GO:0048869 @@ -88132,8 +87629,8 @@ def: "Any biological process involved in the maintenance of an internal steady s subset: goslim_drosophila is_a: GO:0042592 ! homeostatic process intersection_of: GO:0042592 ! homeostatic process -intersection_of: regulates_levels_of CHEBI:24431 ! chemical entity -relationship: regulates_levels_of CHEBI:24431 ! chemical entity +intersection_of: RO:0002332 CHEBI:24431 ! regulates levels of chemical entity +relationship: RO:0002332 CHEBI:24431 ! regulates levels of chemical entity [Term] id: GO:0048880 @@ -88142,8 +87639,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a sensory system over time from its formation to the mature structure." [GOC:dgh] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001032 ! sensory system -relationship: results_in_development_of UBERON:0001032 ! sensory system +intersection_of: RO:0002296 UBERON:0001032 ! results in development of sensory system +relationship: RO:0002296 UBERON:0001032 ! results in development of sensory system [Term] id: GO:0048881 @@ -88161,9 +87658,9 @@ def: "The process whose specific outcome is the progression of the lateral line synonym: "LL development" EXACT [] is_a: GO:0009888 ! tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0010202 ! lateral line +intersection_of: RO:0002296 UBERON:0010202 ! results in development of lateral line relationship: part_of GO:0048925 ! lateral line system development -relationship: results_in_development_of UBERON:0010202 ! lateral line +relationship: RO:0002296 UBERON:0010202 ! results in development of lateral line [Term] id: GO:0048884 @@ -88172,9 +87669,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the neuromast over time, from its formation to the mature structure. The neuromast is the sensory organ of the lateral line and is composed of a population of sensory hair cells, and nonsensory supporting cells and mantle cells. Neuromasts are located superficially on the epithelium or in lateral line canals." [ISBN:0125296509] is_a: GO:0007423 ! sensory organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0008904 ! neuromast +intersection_of: RO:0002296 UBERON:0008904 ! results in development of neuromast relationship: part_of GO:0048882 ! lateral line development -relationship: results_in_development_of UBERON:0008904 ! neuromast +relationship: RO:0002296 UBERON:0008904 ! results in development of neuromast [Term] id: GO:0048886 @@ -88184,9 +87681,9 @@ def: "The process in which a relatively unspecialized cell acquires specialized is_a: GO:0035315 ! hair cell differentiation is_a: GO:0042490 ! mechanoreceptor differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000856 ! neuromast hair cell +intersection_of: RO:0002315 CL:0000856 ! results in acquisition of features of neuromast hair cell relationship: part_of GO:0048884 ! neuromast development -relationship: results_in_acquisition_of_features_of CL:0000856 ! neuromast hair cell +relationship: RO:0002315 CL:0000856 ! results in acquisition of features of neuromast hair cell [Term] id: GO:0048890 @@ -88196,10 +87693,10 @@ def: "The process whose specific outcome is the progression of the lateral line synonym: "gLL ganglion development" EXACT [] is_a: GO:0061550 ! cranial ganglion development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:2000120 ! lateral line ganglion +intersection_of: RO:0002296 UBERON:2000120 ! results in development of lateral line ganglion relationship: part_of GO:0007422 ! peripheral nervous system development relationship: part_of GO:0048925 ! lateral line system development -relationship: results_in_development_of UBERON:2000120 ! lateral line ganglion +relationship: RO:0002296 UBERON:2000120 ! results in development of lateral line ganglion [Term] id: GO:0048891 @@ -88209,9 +87706,9 @@ def: "The process in which a relatively unspecialized cell acquires specialized synonym: "gLL neuron differentiation" EXACT [] is_a: GO:0048934 ! peripheral nervous system neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:2000031 ! lateral line ganglion neuron +intersection_of: RO:0002315 CL:2000031 ! results in acquisition of features of lateral line ganglion neuron relationship: part_of GO:0048890 ! lateral line ganglion development -relationship: results_in_acquisition_of_features_of CL:2000031 ! lateral line ganglion neuron +relationship: RO:0002315 CL:2000031 ! results in acquisition of features of lateral line ganglion neuron [Term] id: GO:0048892 @@ -88221,9 +87718,9 @@ def: "The process whose specific outcome is the progression of the lateral line synonym: "nLL development" EXACT [] is_a: GO:0021545 ! cranial nerve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0008906 ! lateral line nerve +intersection_of: RO:0002296 UBERON:0008906 ! results in development of lateral line nerve relationship: part_of GO:0048925 ! lateral line system development -relationship: results_in_development_of UBERON:0008906 ! lateral line nerve +relationship: RO:0002296 UBERON:0008906 ! results in development of lateral line nerve [Term] id: GO:0048895 @@ -88232,9 +87729,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a glial cell in a lateral line nerve." [PMID:12062041] is_a: GO:0010001 ! glial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000050 ! lateral line nerve glial cell +intersection_of: RO:0002315 CL:1000050 ! results in acquisition of features of lateral line nerve glial cell relationship: part_of GO:0048892 ! lateral line nerve development -relationship: results_in_acquisition_of_features_of CL:1000050 ! lateral line nerve glial cell +relationship: RO:0002315 CL:1000050 ! results in acquisition of features of lateral line nerve glial cell [Term] id: GO:0048896 @@ -88244,9 +87741,9 @@ def: "The movement of a glial cell along the axons in a lateral line nerve." [PM synonym: "glial cell migration in lateral line nerve" EXACT [] is_a: GO:0008347 ! glial cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:1000050 ! lateral line nerve glial cell +intersection_of: RO:0002565 CL:1000050 ! results in movement of lateral line nerve glial cell relationship: part_of GO:0048892 ! lateral line nerve development -relationship: results_in_movement_of CL:1000050 ! lateral line nerve glial cell +relationship: RO:0002565 CL:1000050 ! results in movement of lateral line nerve glial cell [Term] id: GO:0048898 @@ -88256,9 +87753,9 @@ def: "The process whose specific outcome is the progression of the anterior late synonym: "ALL system development" RELATED [] is_a: GO:0048925 ! lateral line system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:2001468 ! anterior lateral line system +intersection_of: RO:0002296 UBERON:2001468 ! results in development of anterior lateral line system relationship: part_of GO:0048881 ! mechanosensory lateral line system development -relationship: results_in_development_of UBERON:2001468 ! anterior lateral line system +relationship: RO:0002296 UBERON:2001468 ! results in development of anterior lateral line system [Term] id: GO:0048899 @@ -88268,9 +87765,9 @@ def: "The process whose specific outcome is the progression of the anterior late synonym: "anterior LL development" EXACT [] is_a: GO:0048882 ! lateral line development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:2001470 ! anterior lateral line +intersection_of: RO:0002296 UBERON:2001470 ! results in development of anterior lateral line relationship: part_of GO:0048898 ! anterior lateral line system development -relationship: results_in_development_of UBERON:2001470 ! anterior lateral line +relationship: RO:0002296 UBERON:2001470 ! results in development of anterior lateral line [Term] id: GO:0048901 @@ -88279,9 +87776,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the anterior lateral line neuromast over time, from its formation to the mature structure. The neuromast is the sensory receptor of the anterior lateral line system and is composed of a population of sensory hair cells, and nonsensory supporting cells and mantle cells. Neuromast are located superficially on the epithelium or in lateral line canals." [ISBN:0125296509] is_a: GO:0048884 ! neuromast development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:2001472 ! anterior lateral line neuromast +intersection_of: RO:0002296 UBERON:2001472 ! results in development of anterior lateral line neuromast relationship: part_of GO:0048899 ! anterior lateral line development -relationship: results_in_development_of UBERON:2001472 ! anterior lateral line neuromast +relationship: RO:0002296 UBERON:2001472 ! results in development of anterior lateral line neuromast [Term] id: GO:0048903 @@ -88290,9 +87787,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of an anterior lateral line neuromast hair cell. Neuromast hair cells are the sensory receptors of the neuromast and are located in a portion of the neuromast called the sensory strip. Each hair cell of the neuromast is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. There are approximately seven hair cells within each neuromast, with each hair cell innervated by afferent and efferent neurons." [ISBN:0125296509, ISBN:0387968377] is_a: GO:0048886 ! neuromast hair cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:2000034 ! anterior lateral line neuromast hair cell +intersection_of: RO:0002315 CL:2000034 ! results in acquisition of features of anterior lateral line neuromast hair cell relationship: part_of GO:0048901 ! anterior lateral line neuromast development -relationship: results_in_acquisition_of_features_of CL:2000034 ! anterior lateral line neuromast hair cell +relationship: RO:0002315 CL:2000034 ! results in acquisition of features of anterior lateral line neuromast hair cell [Term] id: GO:0048907 @@ -88302,9 +87799,9 @@ def: "The process whose specific outcome is the progression of the anterior late synonym: "gALL development" EXACT [] is_a: GO:0048890 ! lateral line ganglion development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:2001391 ! anterior lateral line ganglion +intersection_of: RO:0002296 UBERON:2001391 ! results in development of anterior lateral line ganglion relationship: part_of GO:0048898 ! anterior lateral line system development -relationship: results_in_development_of UBERON:2001391 ! anterior lateral line ganglion +relationship: RO:0002296 UBERON:2001391 ! results in development of anterior lateral line ganglion [Term] id: GO:0048909 @@ -88317,9 +87814,9 @@ synonym: "nALL development" EXACT [] synonym: "rostral lateral line nerve development" EXACT [] is_a: GO:0048892 ! lateral line nerve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:2000425 ! anterior lateral line nerve +intersection_of: RO:0002296 UBERON:2000425 ! results in development of anterior lateral line nerve relationship: part_of GO:0048898 ! anterior lateral line system development -relationship: results_in_development_of UBERON:2000425 ! anterior lateral line nerve +relationship: RO:0002296 UBERON:2000425 ! results in development of anterior lateral line nerve [Term] id: GO:0048913 @@ -88328,9 +87825,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a glial cell in the anterior lateral line nerve." [PMID:15832385] is_a: GO:0048895 ! lateral line nerve glial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000239 ! anterior lateral line nerve glial cell +intersection_of: RO:0002315 CL:1000239 ! results in acquisition of features of anterior lateral line nerve glial cell relationship: part_of GO:0048909 ! anterior lateral line nerve development -relationship: results_in_acquisition_of_features_of CL:1000239 ! anterior lateral line nerve glial cell +relationship: RO:0002315 CL:1000239 ! results in acquisition of features of anterior lateral line nerve glial cell [Term] id: GO:0048915 @@ -88340,9 +87837,9 @@ def: "The process whose specific outcome is the progression of the posterior lat synonym: "PLL" RELATED [] is_a: GO:0048925 ! lateral line system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:2001471 ! posterior lateral line system +intersection_of: RO:0002296 UBERON:2001471 ! results in development of posterior lateral line system relationship: part_of GO:0048881 ! mechanosensory lateral line system development -relationship: results_in_development_of UBERON:2001471 ! posterior lateral line system +relationship: RO:0002296 UBERON:2001471 ! results in development of posterior lateral line system [Term] id: GO:0048916 @@ -88352,9 +87849,9 @@ def: "The process whose specific outcome is the progression of the posterior lat synonym: "PLL development" EXACT [] is_a: GO:0048882 ! lateral line development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006334 ! posterior lateral line +intersection_of: RO:0002296 UBERON:0006334 ! results in development of posterior lateral line relationship: part_of GO:0048915 ! posterior lateral line system development -relationship: results_in_development_of UBERON:0006334 ! posterior lateral line +relationship: RO:0002296 UBERON:0006334 ! results in development of posterior lateral line [Term] id: GO:0048917 @@ -88364,9 +87861,9 @@ def: "The process whose specific outcome is the progression of the posterior lat synonym: "gPLL development" EXACT [] is_a: GO:0048890 ! lateral line ganglion development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:2001314 ! posterior lateral line ganglion +intersection_of: RO:0002296 UBERON:2001314 ! results in development of posterior lateral line ganglion relationship: part_of GO:0048915 ! posterior lateral line system development -relationship: results_in_development_of UBERON:2001314 ! posterior lateral line ganglion +relationship: RO:0002296 UBERON:2001314 ! results in development of posterior lateral line ganglion [Term] id: GO:0048918 @@ -88378,9 +87875,9 @@ synonym: "caudal lateral line nerve development" EXACT [] synonym: "PLLN development" EXACT [] is_a: GO:0048892 ! lateral line nerve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:2000175 ! posterior lateral line nerve +intersection_of: RO:0002296 UBERON:2000175 ! results in development of posterior lateral line nerve relationship: part_of GO:0048915 ! posterior lateral line system development -relationship: results_in_development_of UBERON:2000175 ! posterior lateral line nerve +relationship: RO:0002296 UBERON:2000175 ! results in development of posterior lateral line nerve [Term] id: GO:0048919 @@ -88389,9 +87886,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the posterior lateral line neuromast over time, from its formation to the mature structure. The neuromast is the sensory receptor of the anterior lateral line system and is composed of a population of sensory hair cells, and nonsensory supporting cells and mantle cells. Neuromast are located superficially on the epithelium or in lateral line canals." [ISBN:0125296509] is_a: GO:0048884 ! neuromast development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:2000940 ! posterior lateral line neuromast +intersection_of: RO:0002296 UBERON:2000940 ! results in development of posterior lateral line neuromast relationship: part_of GO:0048916 ! posterior lateral line development -relationship: results_in_development_of UBERON:2000940 ! posterior lateral line neuromast +relationship: RO:0002296 UBERON:2000940 ! results in development of posterior lateral line neuromast [Term] id: GO:0048923 @@ -88400,9 +87897,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a posterior lateral line neuromast hair cell. (N.B. This may be development of neuromast hair cell type or a set of cell of neuromast hair cell type. This will involve the change of a cell or set of cells from one cell identity to another). Hair cells are the sensory receptors of the neuromast and are located in a portion of the neuromast called the sensory strip. Each hair cell of the neuromast is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. There are approximately seven hair cells within each neuromast, with each hair cell innervated by afferent and efferent neurons." [ISBN:0125296509] is_a: GO:0048886 ! neuromast hair cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:2000037 ! posterior lateral line neuromast hair cell +intersection_of: RO:0002315 CL:2000037 ! results in acquisition of features of posterior lateral line neuromast hair cell relationship: part_of GO:0048919 ! posterior lateral line neuromast development -relationship: results_in_acquisition_of_features_of CL:2000037 ! posterior lateral line neuromast hair cell +relationship: RO:0002315 CL:2000037 ! results in acquisition of features of posterior lateral line neuromast hair cell [Term] id: GO:0048925 @@ -88411,8 +87908,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the lateral line system over time, from its formation to the mature structure. The lateral line system is a network of sensory organs (neuromasts) and lateral line nerves located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line system develops from cranial ectodermal placodes situated between the eye and ear." [GOC:dgh, ISBN:0125296509] is_a: GO:0048880 ! sensory system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002540 ! lateral line system -relationship: results_in_development_of UBERON:0002540 ! lateral line system +intersection_of: RO:0002296 UBERON:0002540 ! results in development of lateral line system +relationship: RO:0002296 UBERON:0002540 ! results in development of lateral line system [Term] id: GO:0048928 @@ -88421,9 +87918,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a neuron of the posterior lateral line ganglion." [PMID:15018940] is_a: GO:0048891 ! lateral line ganglion neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000245 ! posterior lateral line ganglion neuron +intersection_of: RO:0002315 CL:1000245 ! results in acquisition of features of posterior lateral line ganglion neuron relationship: part_of GO:0048917 ! posterior lateral line ganglion development -relationship: results_in_acquisition_of_features_of CL:1000245 ! posterior lateral line ganglion neuron +relationship: RO:0002315 CL:1000245 ! results in acquisition of features of posterior lateral line ganglion neuron [Term] id: GO:0048931 @@ -88432,9 +87929,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a glial cell in the posterior lateral line nerve." [PMID:15832385] is_a: GO:0048895 ! lateral line nerve glial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000236 ! posterior lateral line nerve glial cell +intersection_of: RO:0002315 CL:1000236 ! results in acquisition of features of posterior lateral line nerve glial cell relationship: part_of GO:0048918 ! posterior lateral line nerve development -relationship: results_in_acquisition_of_features_of CL:1000236 ! posterior lateral line nerve glial cell +relationship: RO:0002315 CL:1000236 ! results in acquisition of features of posterior lateral line nerve glial cell [Term] id: GO:0048934 @@ -88443,9 +87940,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the peripheral nervous system." [GOC:dgh] is_a: GO:0030182 ! neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:2000032 ! peripheral nervous system neuron +intersection_of: RO:0002315 CL:2000032 ! results in acquisition of features of peripheral nervous system neuron relationship: part_of GO:0007422 ! peripheral nervous system development -relationship: results_in_acquisition_of_features_of CL:2000032 ! peripheral nervous system neuron +relationship: RO:0002315 CL:2000032 ! results in acquisition of features of peripheral nervous system neuron [Term] id: GO:0048935 @@ -88454,9 +87951,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a neuron whose cell body is located in the peripheral nervous system, from initial commitment of the cell to a neuronal fate, to the fully functional differentiated neuron." [GOC:dgh] is_a: GO:0048666 ! neuron development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:2000032 ! peripheral nervous system neuron +intersection_of: RO:0002296 CL:2000032 ! results in development of peripheral nervous system neuron relationship: part_of GO:0048934 ! peripheral nervous system neuron differentiation -relationship: results_in_development_of CL:2000032 ! peripheral nervous system neuron +relationship: RO:0002296 CL:2000032 ! results in development of peripheral nervous system neuron [Term] id: GO:0048937 @@ -88465,9 +87962,9 @@ namespace: biological_process def: "The process aimed at the progression of a lateral line glial cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell." [GOC:dgh] is_a: GO:0021782 ! glial cell development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:1000050 ! lateral line nerve glial cell +intersection_of: RO:0002296 CL:1000050 ! results in development of lateral line nerve glial cell relationship: part_of GO:0048895 ! lateral line nerve glial cell differentiation -relationship: results_in_development_of CL:1000050 ! lateral line nerve glial cell +relationship: RO:0002296 CL:1000050 ! results in development of lateral line nerve glial cell [Term] id: GO:0048938 @@ -88478,7 +87975,7 @@ is_a: GO:0000902 ! cell morphogenesis intersection_of: GO:0000902 ! cell morphogenesis intersection_of: part_of GO:0048937 ! lateral line nerve glial cell development relationship: part_of GO:0048937 ! lateral line nerve glial cell development -relationship: results_in_morphogenesis_of CL:1000050 ! lateral line nerve glial cell +relationship: RO:0002298 CL:1000050 ! results in morphogenesis of lateral line nerve glial cell [Term] id: GO:0048939 @@ -88487,9 +87984,9 @@ namespace: biological_process def: "The process aimed at the progression of a glial cell in the anterior lateral line nerve over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell." [GOC:dgh] is_a: GO:0048937 ! lateral line nerve glial cell development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:1000239 ! anterior lateral line nerve glial cell +intersection_of: RO:0002296 CL:1000239 ! results in development of anterior lateral line nerve glial cell relationship: part_of GO:0048913 ! anterior lateral line nerve glial cell differentiation -relationship: results_in_development_of CL:1000239 ! anterior lateral line nerve glial cell +relationship: RO:0002296 CL:1000239 ! results in development of anterior lateral line nerve glial cell [Term] id: GO:0048940 @@ -88508,9 +88005,9 @@ namespace: biological_process def: "The process aimed at the progression of a glial cell in the posterior lateral line nerve over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell." [GOC:dgh] is_a: GO:0048937 ! lateral line nerve glial cell development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:1000236 ! posterior lateral line nerve glial cell +intersection_of: RO:0002296 CL:1000236 ! results in development of posterior lateral line nerve glial cell relationship: part_of GO:0048931 ! posterior lateral line nerve glial cell differentiation -relationship: results_in_development_of CL:1000236 ! posterior lateral line nerve glial cell +relationship: RO:0002296 CL:1000236 ! results in development of posterior lateral line nerve glial cell [Term] id: GO:0048942 @@ -88532,8 +88029,8 @@ synonym: "establishment and maintenance of chromosome localization" EXACT [] synonym: "establishment and maintenance of chromosome position" EXACT [] is_a: GO:0051640 ! organelle localization intersection_of: GO:0051179 ! localization -intersection_of: has_primary_input GO:0005694 ! chromosome -relationship: has_primary_input GO:0005694 ! chromosome +intersection_of: RO:0004009 GO:0005694 ! has primary input chromosome +relationship: RO:0004009 GO:0005694 ! has primary input chromosome [Term] id: GO:0050432 @@ -88543,8 +88040,8 @@ def: "The regulated release of catecholamines by a cell. The catecholamines are is_a: GO:0032940 ! secretion by cell is_a: GO:0051937 ! catecholamine transport intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:33567 ! catecholamine -relationship: has_primary_input CHEBI:33567 ! catecholamine +intersection_of: RO:0004009 CHEBI:33567 ! has primary input catecholamine +relationship: RO:0004009 CHEBI:33567 ! has primary input catecholamine [Term] id: GO:0050433 @@ -88554,8 +88051,8 @@ def: "Any process that modulates the frequency, rate or extent of the regulated is_a: GO:0051952 ! regulation of amine transport is_a: GO:1903530 ! regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0050432 ! catecholamine secretion -relationship: regulates GO:0050432 ! catecholamine secretion +intersection_of: RO:0002211 GO:0050432 ! regulates (processual) catecholamine secretion +relationship: RO:0002211 GO:0050432 ! regulates (processual) catecholamine secretion [Term] id: GO:0050650 @@ -88588,8 +88085,8 @@ namespace: biological_process def: "The directed movement of nucleic acids, single or double-stranded polynucleotides involved in the storage, transmission and transfer of genetic information, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai, ISBN:0198506732] is_a: GO:0015931 ! nucleobase-containing compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:33696 ! nucleic acid -relationship: has_primary_input CHEBI:33696 ! nucleic acid +intersection_of: RO:0004009 CHEBI:33696 ! has primary input nucleic acid +relationship: RO:0004009 CHEBI:33696 ! has primary input nucleic acid [Term] id: GO:0050658 @@ -88599,8 +88096,8 @@ def: "The directed movement of RNA, ribonucleic acids, into, out of or within a is_a: GO:0050657 ! nucleic acid transport is_a: GO:0051236 ! establishment of RNA localization intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:33697 ! ribonucleic acid -relationship: has_primary_input CHEBI:33697 ! ribonucleic acid +intersection_of: RO:0004009 CHEBI:33697 ! has primary input ribonucleic acid +relationship: RO:0004009 CHEBI:33697 ! has primary input ribonucleic acid [Term] id: GO:0050670 @@ -88610,8 +88107,8 @@ def: "Any process that modulates the frequency, rate or extent of lymphocyte pro is_a: GO:0032944 ! regulation of mononuclear cell proliferation is_a: GO:0051249 ! regulation of lymphocyte activation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0046651 ! lymphocyte proliferation -relationship: regulates GO:0046651 ! lymphocyte proliferation +intersection_of: RO:0002211 GO:0046651 ! regulates (processual) lymphocyte proliferation +relationship: RO:0002211 GO:0046651 ! regulates (processual) lymphocyte proliferation [Term] id: GO:0050671 @@ -88627,8 +88124,8 @@ is_a: GO:0032946 ! positive regulation of mononuclear cell proliferation is_a: GO:0050670 ! regulation of lymphocyte proliferation is_a: GO:0051251 ! positive regulation of lymphocyte activation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0046651 ! lymphocyte proliferation -relationship: positively_regulates GO:0046651 ! lymphocyte proliferation +intersection_of: RO:0002213 GO:0046651 ! positively regulates lymphocyte proliferation +relationship: RO:0002213 GO:0046651 ! positively regulates lymphocyte proliferation [Term] id: GO:0050672 @@ -88643,8 +88140,8 @@ is_a: GO:0032945 ! negative regulation of mononuclear cell proliferation is_a: GO:0050670 ! regulation of lymphocyte proliferation is_a: GO:0051250 ! negative regulation of lymphocyte activation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0046651 ! lymphocyte proliferation -relationship: negatively_regulates GO:0046651 ! lymphocyte proliferation +intersection_of: RO:0002212 GO:0046651 ! negatively regulates lymphocyte proliferation +relationship: RO:0002212 GO:0046651 ! negatively regulates lymphocyte proliferation [Term] id: GO:0050673 @@ -88653,8 +88150,8 @@ namespace: biological_process def: "The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population. Epithelial cells make up the epithelium, the covering of internal and external surfaces of the body, including the lining of vessels and other small cavities. It consists of cells joined by small amounts of cementing substances." [ISBN:0721662544] is_a: GO:0008283 ! cell population proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000066 ! epithelial cell -relationship: acts_on_population_of CL:0000066 ! epithelial cell +intersection_of: RO:0012003 CL:0000066 ! acts on population of epithelial cell +relationship: RO:0012003 CL:0000066 ! acts on population of epithelial cell [Term] id: GO:0050674 @@ -88663,8 +88160,8 @@ namespace: biological_process def: "The multiplication or reproduction of urothelial cells, resulting in the expansion of a cell population. Urothelial cells make up a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria." [ISBN:0721662544] is_a: GO:0050673 ! epithelial cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000731 ! urothelial cell -relationship: acts_on_population_of CL:0000731 ! urothelial cell +intersection_of: RO:0012003 CL:0000731 ! acts on population of urothelial cell +relationship: RO:0012003 CL:0000731 ! acts on population of urothelial cell [Term] id: GO:0050675 @@ -88673,8 +88170,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of urothelial cell proliferation." [GOC:ai] is_a: GO:0050678 ! regulation of epithelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0050674 ! urothelial cell proliferation -relationship: regulates GO:0050674 ! urothelial cell proliferation +intersection_of: RO:0002211 GO:0050674 ! regulates (processual) urothelial cell proliferation +relationship: RO:0002211 GO:0050674 ! regulates (processual) urothelial cell proliferation [Term] id: GO:0050676 @@ -88688,8 +88185,8 @@ synonym: "inhibition of urothelial cell proliferation" NARROW [] is_a: GO:0050675 ! regulation of urothelial cell proliferation is_a: GO:0050680 ! negative regulation of epithelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0050674 ! urothelial cell proliferation -relationship: negatively_regulates GO:0050674 ! urothelial cell proliferation +intersection_of: RO:0002212 GO:0050674 ! negatively regulates urothelial cell proliferation +relationship: RO:0002212 GO:0050674 ! negatively regulates urothelial cell proliferation [Term] id: GO:0050677 @@ -88704,8 +88201,8 @@ synonym: "upregulation of urothelial cell proliferation" EXACT [] is_a: GO:0050675 ! regulation of urothelial cell proliferation is_a: GO:0050679 ! positive regulation of epithelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0050674 ! urothelial cell proliferation -relationship: positively_regulates GO:0050674 ! urothelial cell proliferation +intersection_of: RO:0002213 GO:0050674 ! positively regulates urothelial cell proliferation +relationship: RO:0002213 GO:0050674 ! positively regulates urothelial cell proliferation [Term] id: GO:0050678 @@ -88714,8 +88211,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of epithelial cell proliferation." [GOC:ai] is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0050673 ! epithelial cell proliferation -relationship: regulates GO:0050673 ! epithelial cell proliferation +intersection_of: RO:0002211 GO:0050673 ! regulates (processual) epithelial cell proliferation +relationship: RO:0002211 GO:0050673 ! regulates (processual) epithelial cell proliferation [Term] id: GO:0050679 @@ -88730,8 +88227,8 @@ synonym: "upregulation of epithelial cell proliferation" EXACT [] is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:0050678 ! regulation of epithelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0050673 ! epithelial cell proliferation -relationship: positively_regulates GO:0050673 ! epithelial cell proliferation +intersection_of: RO:0002213 GO:0050673 ! positively regulates epithelial cell proliferation +relationship: RO:0002213 GO:0050673 ! positively regulates epithelial cell proliferation [Term] id: GO:0050680 @@ -88745,8 +88242,8 @@ synonym: "inhibition of epithelial cell proliferation" NARROW [] is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:0050678 ! regulation of epithelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0050673 ! epithelial cell proliferation -relationship: negatively_regulates GO:0050673 ! epithelial cell proliferation +intersection_of: RO:0002212 GO:0050673 ! negatively regulates epithelial cell proliferation +relationship: RO:0002212 GO:0050673 ! negatively regulates epithelial cell proliferation [Term] id: GO:0050708 @@ -88756,8 +88253,8 @@ def: "Any process that modulates the frequency, rate or extent of the controlled is_a: GO:0051223 ! regulation of protein transport is_a: GO:1903530 ! regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009306 ! protein secretion -relationship: regulates GO:0009306 ! protein secretion +intersection_of: RO:0002211 GO:0009306 ! regulates (processual) protein secretion +relationship: RO:0002211 GO:0009306 ! regulates (processual) protein secretion [Term] id: GO:0050709 @@ -88772,8 +88269,8 @@ is_a: GO:0050708 ! regulation of protein secretion is_a: GO:0051224 ! negative regulation of protein transport is_a: GO:1903531 ! negative regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009306 ! protein secretion -relationship: negatively_regulates GO:0009306 ! protein secretion +intersection_of: RO:0002212 GO:0009306 ! negatively regulates protein secretion +relationship: RO:0002212 GO:0009306 ! negatively regulates protein secretion [Term] id: GO:0050714 @@ -88789,8 +88286,8 @@ is_a: GO:0050708 ! regulation of protein secretion is_a: GO:0051222 ! positive regulation of protein transport is_a: GO:1903532 ! positive regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009306 ! protein secretion -relationship: positively_regulates GO:0009306 ! protein secretion +intersection_of: RO:0002213 GO:0009306 ! positively regulates protein secretion +relationship: RO:0002213 GO:0009306 ! positively regulates protein secretion [Term] id: GO:0050727 @@ -88800,8 +88297,8 @@ def: "Any process that modulates the frequency, rate or extent of the inflammato is_a: GO:0031347 ! regulation of defense response is_a: GO:0032101 ! regulation of response to external stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006954 ! inflammatory response -relationship: regulates GO:0006954 ! inflammatory response +intersection_of: RO:0002211 GO:0006954 ! regulates (processual) inflammatory response +relationship: RO:0002211 GO:0006954 ! regulates (processual) inflammatory response [Term] id: GO:0050728 @@ -88818,8 +88315,8 @@ is_a: GO:0031348 ! negative regulation of defense response is_a: GO:0032102 ! negative regulation of response to external stimulus is_a: GO:0050727 ! regulation of inflammatory response intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006954 ! inflammatory response -relationship: negatively_regulates GO:0006954 ! inflammatory response +intersection_of: RO:0002212 GO:0006954 ! negatively regulates inflammatory response +relationship: RO:0002212 GO:0006954 ! negatively regulates inflammatory response [Term] id: GO:0050729 @@ -88835,24 +88332,27 @@ is_a: GO:0031349 ! positive regulation of defense response is_a: GO:0032103 ! positive regulation of response to external stimulus is_a: GO:0050727 ! regulation of inflammatory response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006954 ! inflammatory response -relationship: positively_regulates GO:0006954 ! inflammatory response +intersection_of: RO:0002213 GO:0006954 ! positively regulates inflammatory response +relationship: RO:0002213 GO:0006954 ! positively regulates inflammatory response [Term] id: GO:0050730 name: regulation of peptidyl-tyrosine phosphorylation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine." [GOC:ai] +subset: gocheck_obsoletion_candidate is_a: GO:0001932 ! regulation of protein phosphorylation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0018108 ! peptidyl-tyrosine phosphorylation -relationship: regulates GO:0018108 ! peptidyl-tyrosine phosphorylation +intersection_of: RO:0002211 GO:0018108 ! regulates (processual) peptidyl-tyrosine phosphorylation +relationship: RO:0002211 GO:0018108 ! regulates (processual) peptidyl-tyrosine phosphorylation +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28278" xsd:anyURI [Term] id: GO:0050731 name: positive regulation of peptidyl-tyrosine phosphorylation namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine." [GOC:ai] +subset: gocheck_obsoletion_candidate synonym: "activation of peptidyl-tyrosine phosphorylation" NARROW [] synonym: "stimulation of peptidyl-tyrosine phosphorylation" NARROW [] synonym: "up regulation of peptidyl-tyrosine phosphorylation" EXACT [] @@ -88861,14 +88361,15 @@ synonym: "upregulation of peptidyl-tyrosine phosphorylation" EXACT [] is_a: GO:0001934 ! positive regulation of protein phosphorylation is_a: GO:0050730 ! regulation of peptidyl-tyrosine phosphorylation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0018108 ! peptidyl-tyrosine phosphorylation -relationship: positively_regulates GO:0018108 ! peptidyl-tyrosine phosphorylation +intersection_of: RO:0002213 GO:0018108 ! positively regulates peptidyl-tyrosine phosphorylation +relationship: RO:0002213 GO:0018108 ! positively regulates peptidyl-tyrosine phosphorylation [Term] id: GO:0050732 name: negative regulation of peptidyl-tyrosine phosphorylation namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine." [GOC:ai] +subset: gocheck_obsoletion_candidate synonym: "down regulation of peptidyl-tyrosine phosphorylation" EXACT [] synonym: "down-regulation of peptidyl-tyrosine phosphorylation" EXACT [] synonym: "downregulation of peptidyl-tyrosine phosphorylation" EXACT [] @@ -88876,8 +88377,9 @@ synonym: "inhibition of peptidyl-tyrosine phosphorylation" NARROW [] is_a: GO:0001933 ! negative regulation of protein phosphorylation is_a: GO:0050730 ! regulation of peptidyl-tyrosine phosphorylation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0018108 ! peptidyl-tyrosine phosphorylation -relationship: negatively_regulates GO:0018108 ! peptidyl-tyrosine phosphorylation +intersection_of: RO:0002212 GO:0018108 ! negatively regulates peptidyl-tyrosine phosphorylation +relationship: RO:0002212 GO:0018108 ! negatively regulates peptidyl-tyrosine phosphorylation +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28278" xsd:anyURI [Term] id: GO:0050746 @@ -88885,11 +88387,10 @@ name: regulation of lipoprotein metabolic process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving lipoproteins, any conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids." [GOC:ai] synonym: "regulation of lipoprotein metabolism" EXACT [] -is_a: GO:0031323 ! regulation of cellular metabolic process is_a: GO:0060255 ! regulation of macromolecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042157 ! lipoprotein metabolic process -relationship: regulates GO:0042157 ! lipoprotein metabolic process +intersection_of: RO:0002211 GO:0042157 ! regulates (processual) lipoprotein metabolic process +relationship: RO:0002211 GO:0042157 ! regulates (processual) lipoprotein metabolic process [Term] id: GO:0050747 @@ -88902,12 +88403,12 @@ synonym: "stimulation of lipoprotein metabolic process" NARROW [] synonym: "up regulation of lipoprotein metabolic process" EXACT [] synonym: "up-regulation of lipoprotein metabolic process" EXACT [] synonym: "upregulation of lipoprotein metabolic process" EXACT [] +is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:0010604 ! positive regulation of macromolecule metabolic process -is_a: GO:0031328 ! positive regulation of cellular biosynthetic process is_a: GO:0050746 ! regulation of lipoprotein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042157 ! lipoprotein metabolic process -relationship: positively_regulates GO:0042157 ! lipoprotein metabolic process +intersection_of: RO:0002213 GO:0042157 ! positively regulates lipoprotein metabolic process +relationship: RO:0002213 GO:0042157 ! positively regulates lipoprotein metabolic process [Term] id: GO:0050748 @@ -88920,11 +88421,10 @@ synonym: "downregulation of lipoprotein metabolic process" EXACT [] synonym: "inhibition of lipoprotein metabolic process" NARROW [] synonym: "negative regulation of lipoprotein metabolism" EXACT [] is_a: GO:0010605 ! negative regulation of macromolecule metabolic process -is_a: GO:0031324 ! negative regulation of cellular metabolic process is_a: GO:0050746 ! regulation of lipoprotein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042157 ! lipoprotein metabolic process -relationship: negatively_regulates GO:0042157 ! lipoprotein metabolic process +intersection_of: RO:0002212 GO:0042157 ! negatively regulates lipoprotein metabolic process +relationship: RO:0002212 GO:0042157 ! negatively regulates lipoprotein metabolic process [Term] id: GO:0050764 @@ -88933,9 +88433,9 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of phagocytosis, the process in which phagocytes engulf external particulate material." [GOC:ai] is_a: GO:0030100 ! regulation of endocytosis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006909 ! phagocytosis +intersection_of: RO:0002211 GO:0006909 ! regulates (processual) phagocytosis relationship: never_in_taxon NCBITaxon:147537 ! Saccharomycotina -relationship: regulates GO:0006909 ! phagocytosis +relationship: RO:0002211 GO:0006909 ! regulates (processual) phagocytosis [Term] id: GO:0050765 @@ -88949,8 +88449,8 @@ synonym: "inhibition of phagocytosis" NARROW [] is_a: GO:0045806 ! negative regulation of endocytosis is_a: GO:0050764 ! regulation of phagocytosis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006909 ! phagocytosis -relationship: negatively_regulates GO:0006909 ! phagocytosis +intersection_of: RO:0002212 GO:0006909 ! negatively regulates phagocytosis +relationship: RO:0002212 GO:0006909 ! negatively regulates phagocytosis [Term] id: GO:0050766 @@ -88965,8 +88465,8 @@ synonym: "upregulation of phagocytosis" EXACT [] is_a: GO:0045807 ! positive regulation of endocytosis is_a: GO:0050764 ! regulation of phagocytosis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006909 ! phagocytosis -relationship: positively_regulates GO:0006909 ! phagocytosis +intersection_of: RO:0002213 GO:0006909 ! positively regulates phagocytosis +relationship: RO:0002213 GO:0006909 ! positively regulates phagocytosis [Term] id: GO:0050767 @@ -88976,8 +88476,8 @@ def: "Any process that modulates the frequency, rate or extent of neurogenesis, is_a: GO:0051960 ! regulation of nervous system development is_a: GO:0060284 ! regulation of cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0022008 ! neurogenesis -relationship: regulates GO:0022008 ! neurogenesis +intersection_of: RO:0002211 GO:0022008 ! regulates (processual) neurogenesis +relationship: RO:0002211 GO:0022008 ! regulates (processual) neurogenesis [Term] id: GO:0050768 @@ -88992,8 +88492,8 @@ is_a: GO:0010721 ! negative regulation of cell development is_a: GO:0050767 ! regulation of neurogenesis is_a: GO:0051961 ! negative regulation of nervous system development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0022008 ! neurogenesis -relationship: negatively_regulates GO:0022008 ! neurogenesis +intersection_of: RO:0002212 GO:0022008 ! negatively regulates neurogenesis +relationship: RO:0002212 GO:0022008 ! negatively regulates neurogenesis [Term] id: GO:0050769 @@ -89009,8 +88509,8 @@ is_a: GO:0010720 ! positive regulation of cell development is_a: GO:0050767 ! regulation of neurogenesis is_a: GO:0051962 ! positive regulation of nervous system development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0022008 ! neurogenesis -relationship: positively_regulates GO:0022008 ! neurogenesis +intersection_of: RO:0002213 GO:0022008 ! positively regulates neurogenesis +relationship: RO:0002213 GO:0022008 ! positively regulates neurogenesis [Term] id: GO:0050770 @@ -89020,9 +88520,9 @@ def: "Any process that modulates the frequency, rate or extent of axonogenesis, is_a: GO:0010975 ! regulation of neuron projection development is_a: GO:0022603 ! regulation of anatomical structure morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007409 ! axonogenesis -relationship: regulates GO:0007409 ! axonogenesis -relationship: regulates GO:0031175 ! neuron projection development +intersection_of: RO:0002211 GO:0007409 ! regulates (processual) axonogenesis +relationship: RO:0002211 GO:0007409 ! regulates (processual) axonogenesis +relationship: RO:0002211 GO:0031175 ! regulates (processual) neuron projection development [Term] id: GO:0050771 @@ -89037,9 +88537,9 @@ is_a: GO:0010977 ! negative regulation of neuron projection development is_a: GO:0050768 ! negative regulation of neurogenesis is_a: GO:0050770 ! regulation of axonogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007409 ! axonogenesis -relationship: negatively_regulates GO:0007409 ! axonogenesis -relationship: negatively_regulates GO:0031175 ! neuron projection development +intersection_of: RO:0002212 GO:0007409 ! negatively regulates axonogenesis +relationship: RO:0002212 GO:0007409 ! negatively regulates axonogenesis +relationship: RO:0002212 GO:0031175 ! negatively regulates neuron projection development [Term] id: GO:0050772 @@ -89055,8 +88555,8 @@ is_a: GO:0031346 ! positive regulation of cell projection organization is_a: GO:0050769 ! positive regulation of neurogenesis is_a: GO:0050770 ! regulation of axonogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007409 ! axonogenesis -relationship: positively_regulates GO:0007409 ! axonogenesis +intersection_of: RO:0002213 GO:0007409 ! positively regulates axonogenesis +relationship: RO:0002213 GO:0007409 ! positively regulates axonogenesis [Term] id: GO:0050773 @@ -89066,8 +88566,8 @@ def: "Any process that modulates the frequency, rate or extent of dendrite devel is_a: GO:0010975 ! regulation of neuron projection development is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0016358 ! dendrite development -relationship: regulates GO:0016358 ! dendrite development +intersection_of: RO:0002211 GO:0016358 ! regulates (processual) dendrite development +relationship: RO:0002211 GO:0016358 ! regulates (processual) dendrite development [Term] id: GO:0050774 @@ -89082,8 +88582,8 @@ is_a: GO:0031345 ! negative regulation of cell projection organization is_a: GO:0048814 ! regulation of dendrite morphogenesis is_a: GO:0050768 ! negative regulation of neurogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048813 ! dendrite morphogenesis -relationship: negatively_regulates GO:0048813 ! dendrite morphogenesis +intersection_of: RO:0002212 GO:0048813 ! negatively regulates dendrite morphogenesis +relationship: RO:0002212 GO:0048813 ! negatively regulates dendrite morphogenesis [Term] id: GO:0050775 @@ -89100,9 +88600,9 @@ is_a: GO:0031346 ! positive regulation of cell projection organization is_a: GO:0048814 ! regulation of dendrite morphogenesis is_a: GO:0050769 ! positive regulation of neurogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048813 ! dendrite morphogenesis -relationship: positively_regulates GO:0000902 ! cell morphogenesis -relationship: positively_regulates GO:0048813 ! dendrite morphogenesis +intersection_of: RO:0002213 GO:0048813 ! positively regulates dendrite morphogenesis +relationship: RO:0002213 GO:0000902 ! positively regulates cell morphogenesis +relationship: RO:0002213 GO:0048813 ! positively regulates dendrite morphogenesis [Term] id: GO:0050776 @@ -89112,8 +88612,8 @@ def: "Any process that modulates the frequency, rate or extent of the immune res is_a: GO:0002682 ! regulation of immune system process is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006955 ! immune response -relationship: regulates GO:0006955 ! immune response +intersection_of: RO:0002211 GO:0006955 ! regulates (processual) immune response +relationship: RO:0002211 GO:0006955 ! regulates (processual) immune response [Term] id: GO:0050777 @@ -89128,8 +88628,8 @@ is_a: GO:0002683 ! negative regulation of immune system process is_a: GO:0048585 ! negative regulation of response to stimulus is_a: GO:0050776 ! regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006955 ! immune response -relationship: negatively_regulates GO:0006955 ! immune response +intersection_of: RO:0002212 GO:0006955 ! negatively regulates immune response +relationship: RO:0002212 GO:0006955 ! negatively regulates immune response [Term] id: GO:0050778 @@ -89144,8 +88644,8 @@ is_a: GO:0002684 ! positive regulation of immune system process is_a: GO:0048584 ! positive regulation of response to stimulus is_a: GO:0050776 ! regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006955 ! immune response -relationship: positively_regulates GO:0006955 ! immune response +intersection_of: RO:0002213 GO:0006955 ! positively regulates immune response +relationship: RO:0002213 GO:0006955 ! positively regulates immune response [Term] id: GO:0050789 @@ -89159,8 +88659,8 @@ subset: goslim_pir synonym: "regulation of physiological process" EXACT [] is_a: GO:0065007 ! biological regulation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008150 ! biological_process -relationship: regulates GO:0008150 ! biological_process +intersection_of: RO:0002211 GO:0008150 ! regulates (processual) biological_process +relationship: RO:0002211 GO:0008150 ! regulates (processual) biological_process [Term] id: GO:0050790 @@ -89168,14 +88668,14 @@ name: regulation of catalytic activity namespace: biological_process alt_id: GO:0048552 def: "Any process that modulates the activity of an enzyme." [GOC:ai, GOC:ebc, GOC:vw] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate subset: goslim_chembl synonym: "regulation of enzyme activity" EXACT [] synonym: "regulation of metalloenzyme activity" NARROW [] is_a: GO:0065009 ! regulation of molecular function intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003824 ! catalytic activity -relationship: regulates GO:0003824 ! catalytic activity +intersection_of: RO:0002211 GO:0003824 ! regulates (processual) catalytic activity +relationship: RO:0002211 GO:0003824 ! regulates (processual) catalytic activity [Term] id: GO:0050793 @@ -89184,8 +88684,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of development, the biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult)." [GOC:go_curators] is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032502 ! developmental process -relationship: regulates GO:0032502 ! developmental process +intersection_of: RO:0002211 GO:0032502 ! regulates (processual) developmental process +relationship: RO:0002211 GO:0032502 ! regulates (processual) developmental process [Term] id: GO:0050794 @@ -89197,8 +88697,8 @@ subset: gocheck_do_not_annotate synonym: "regulation of cellular physiological process" EXACT [] is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009987 ! cellular process -relationship: regulates GO:0009987 ! cellular process +intersection_of: RO:0002211 GO:0009987 ! regulates (processual) cellular process +relationship: RO:0002211 GO:0009987 ! regulates (processual) cellular process [Term] id: GO:0050795 @@ -89208,8 +88708,8 @@ def: "Any process that modulates the frequency, rate or extent of behavior, the synonym: "regulation of behaviour" EXACT [] is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007610 ! behavior -relationship: regulates GO:0007610 ! behavior +intersection_of: RO:0002211 GO:0007610 ! regulates (processual) behavior +relationship: RO:0002211 GO:0007610 ! regulates (processual) behavior [Term] id: GO:0050796 @@ -89219,8 +88719,8 @@ def: "Any process that modulates the frequency, rate or extent of the regulated is_a: GO:0050708 ! regulation of protein secretion is_a: GO:0090276 ! regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030073 ! insulin secretion -relationship: regulates GO:0030073 ! insulin secretion +intersection_of: RO:0002211 GO:0030073 ! regulates (processual) insulin secretion +relationship: RO:0002211 GO:0030073 ! regulates (processual) insulin secretion [Term] id: GO:0050801 @@ -89234,8 +88734,8 @@ synonym: "negative regulation of crystal formation" RELATED [] synonym: "regulation of ion homeostasis" RELATED [] is_a: GO:0048878 ! chemical homeostasis intersection_of: GO:0048878 ! chemical homeostasis -intersection_of: regulates_levels_of CHEBI:24867 ! monoatomic ion -relationship: regulates_levels_of CHEBI:24867 ! monoatomic ion +intersection_of: RO:0002332 CHEBI:24867 ! regulates levels of monoatomic ion +relationship: RO:0002332 CHEBI:24867 ! regulates levels of monoatomic ion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24455" xsd:anyURI [Term] @@ -89255,7 +88755,7 @@ name: regulation of synapse structure or activity namespace: biological_process def: "Any process that modulates the physical form or the activity of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell)." [GOC:ai] relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa [Term] id: GO:0050804 @@ -89268,8 +88768,8 @@ synonym: "regulation of chemical synaptic transmission" EXACT [] synonym: "regulation of synaptic transmission" EXACT [] is_a: GO:0099177 ! regulation of trans-synaptic signaling intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007268 ! chemical synaptic transmission -relationship: regulates GO:0007268 ! chemical synaptic transmission +intersection_of: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +relationship: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission [Term] id: GO:0050805 @@ -89284,8 +88784,8 @@ is_a: GO:0010648 ! negative regulation of cell communication is_a: GO:0023057 ! negative regulation of signaling is_a: GO:0050804 ! modulation of chemical synaptic transmission intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007268 ! chemical synaptic transmission -relationship: negatively_regulates GO:0007268 ! chemical synaptic transmission +intersection_of: RO:0002212 GO:0007268 ! negatively regulates chemical synaptic transmission +relationship: RO:0002212 GO:0007268 ! negatively regulates chemical synaptic transmission [Term] id: GO:0050806 @@ -89301,8 +88801,8 @@ is_a: GO:0010647 ! positive regulation of cell communication is_a: GO:0023056 ! positive regulation of signaling is_a: GO:0050804 ! modulation of chemical synaptic transmission intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007268 ! chemical synaptic transmission -relationship: positively_regulates GO:0007268 ! chemical synaptic transmission +intersection_of: RO:0002213 GO:0007268 ! positively regulates chemical synaptic transmission +relationship: RO:0002213 GO:0007268 ! positively regulates chemical synaptic transmission [Term] id: GO:0050807 @@ -89315,9 +88815,9 @@ synonym: "regulation of synapse organization and biogenesis" RELATED [GOC:mah] synonym: "regulation of synapse structure" EXACT [] is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0050808 ! synapse organization +intersection_of: RO:0002211 GO:0050808 ! regulates (processual) synapse organization relationship: part_of GO:0050803 ! regulation of synapse structure or activity -relationship: regulates GO:0050808 ! synapse organization +relationship: RO:0002211 GO:0050808 ! regulates (processual) synapse organization [Term] id: GO:0050808 @@ -89332,8 +88832,8 @@ synonym: "synapse organisation" EXACT [] synonym: "synapse organization and biogenesis" RELATED [GOC:mah] is_a: GO:0034330 ! cell junction organization intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_organization_of GO:0045202 ! synapse -relationship: results_in_organization_of GO:0045202 ! synapse +intersection_of: RO:0002592 GO:0045202 ! results in organization of synapse +relationship: RO:0002592 GO:0045202 ! results in organization of synapse [Term] id: GO:0050810 @@ -89348,8 +88848,8 @@ synonym: "regulation of steroidogenesis" EXACT [] is_a: GO:0019218 ! regulation of steroid metabolic process is_a: GO:0046890 ! regulation of lipid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006694 ! steroid biosynthetic process -relationship: regulates GO:0006694 ! steroid biosynthetic process +intersection_of: RO:0002211 GO:0006694 ! regulates (processual) steroid biosynthetic process +relationship: RO:0002211 GO:0006694 ! regulates (processual) steroid biosynthetic process [Term] id: GO:0050817 @@ -89368,8 +88868,8 @@ def: "Any process that modulates the frequency, rate or extent of coagulation, t synonym: "regulation of clotting" EXACT [] is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0050817 ! coagulation -relationship: regulates GO:0050817 ! coagulation +intersection_of: RO:0002211 GO:0050817 ! regulates (processual) coagulation +relationship: RO:0002211 GO:0050817 ! regulates (processual) coagulation [Term] id: GO:0050819 @@ -89385,8 +88885,8 @@ synonym: "negative regulation of clotting" EXACT [] is_a: GO:0050818 ! regulation of coagulation is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0050817 ! coagulation -relationship: negatively_regulates GO:0050817 ! coagulation +intersection_of: RO:0002212 GO:0050817 ! negatively regulates coagulation +relationship: RO:0002212 GO:0050817 ! negatively regulates coagulation [Term] id: GO:0050820 @@ -89402,8 +88902,8 @@ synonym: "upregulation of coagulation" EXACT [] is_a: GO:0050818 ! regulation of coagulation is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0050817 ! coagulation -relationship: positively_regulates GO:0050817 ! coagulation +intersection_of: RO:0002213 GO:0050817 ! positively regulates coagulation +relationship: RO:0002213 GO:0050817 ! positively regulates coagulation [Term] id: GO:0050825 @@ -89416,8 +88916,8 @@ synonym: "ice nucleation activity" RELATED [] synonym: "ice nucleation inhibitor activity" RELATED [] is_a: GO:0036094 ! small molecule binding intersection_of: GO:0036094 ! small molecule binding -intersection_of: has_primary_input CHEBI:15377 ! water -relationship: has_primary_input CHEBI:15377 ! water +intersection_of: RO:0004009 CHEBI:15377 ! has primary input water +relationship: RO:0004009 CHEBI:15377 ! has primary input water [Term] id: GO:0050832 @@ -89438,8 +88938,8 @@ synonym: "response to parasitic fungus" NARROW [] is_a: GO:0009620 ! response to fungus is_a: GO:0098542 ! defense response to other organism intersection_of: GO:0006952 ! defense response -intersection_of: has_primary_input NCBITaxon:4751 ! Fungi -relationship: has_primary_input NCBITaxon:4751 ! Fungi +intersection_of: RO:0004009 NCBITaxon:4751 ! has primary input Fungi +relationship: RO:0004009 NCBITaxon:4751 ! has primary input Fungi [Term] id: GO:0050839 @@ -89463,8 +88963,8 @@ synonym: "adhesive extracellular matrix constituent" RELATED [] synonym: "extracellular matrix constituent binding" EXACT [] is_a: GO:0005488 ! binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input GO:0031012 ! extracellular matrix -relationship: has_primary_input GO:0031012 ! extracellular matrix +intersection_of: RO:0004009 GO:0031012 ! has primary input extracellular matrix +relationship: RO:0004009 GO:0031012 ! has primary input extracellular matrix [Term] id: GO:0050863 @@ -89476,8 +88976,8 @@ synonym: "regulation of T-cell activation" EXACT [] synonym: "regulation of T-lymphocyte activation" EXACT [] is_a: GO:0051249 ! regulation of lymphocyte activation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042110 ! T cell activation -relationship: regulates GO:0042110 ! T cell activation +intersection_of: RO:0002211 GO:0042110 ! regulates (processual) T cell activation +relationship: RO:0002211 GO:0042110 ! regulates (processual) T cell activation [Term] id: GO:0050864 @@ -89489,8 +88989,8 @@ synonym: "regulation of B-cell activation" EXACT [] synonym: "regulation of B-lymphocyte activation" EXACT [] is_a: GO:0051249 ! regulation of lymphocyte activation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042113 ! B cell activation -relationship: regulates GO:0042113 ! B cell activation +intersection_of: RO:0002211 GO:0042113 ! regulates (processual) B cell activation +relationship: RO:0002211 GO:0042113 ! regulates (processual) B cell activation [Term] id: GO:0050865 @@ -89500,9 +89000,9 @@ def: "Any process that modulates the frequency, rate or extent of cell activatio is_a: GO:0050794 ! regulation of cellular process is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001775 ! cell activation +intersection_of: RO:0002211 GO:0001775 ! regulates (processual) cell activation relationship: never_in_taxon NCBITaxon:4890 ! Ascomycota -relationship: regulates GO:0001775 ! cell activation +relationship: RO:0002211 GO:0001775 ! regulates (processual) cell activation [Term] id: GO:0050866 @@ -89517,8 +89017,8 @@ is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:0050865 ! regulation of cell activation is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001775 ! cell activation -relationship: negatively_regulates GO:0001775 ! cell activation +intersection_of: RO:0002212 GO:0001775 ! negatively regulates cell activation +relationship: RO:0002212 GO:0001775 ! negatively regulates cell activation [Term] id: GO:0050867 @@ -89534,8 +89034,8 @@ is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0050865 ! regulation of cell activation is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001775 ! cell activation -relationship: positively_regulates GO:0001775 ! cell activation +intersection_of: RO:0002213 GO:0001775 ! positively regulates cell activation +relationship: RO:0002213 GO:0001775 ! positively regulates cell activation [Term] id: GO:0050868 @@ -89553,8 +89053,8 @@ is_a: GO:0050863 ! regulation of T cell activation is_a: GO:0051250 ! negative regulation of lymphocyte activation is_a: GO:1903038 ! negative regulation of leukocyte cell-cell adhesion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042110 ! T cell activation -relationship: negatively_regulates GO:0042110 ! T cell activation +intersection_of: RO:0002212 GO:0042110 ! negatively regulates T cell activation +relationship: RO:0002212 GO:0042110 ! negatively regulates T cell activation [Term] id: GO:0050869 @@ -89571,8 +89071,8 @@ synonym: "negative regulation of B-lymphocyte activation" EXACT [] is_a: GO:0050864 ! regulation of B cell activation is_a: GO:0051250 ! negative regulation of lymphocyte activation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042113 ! B cell activation -relationship: negatively_regulates GO:0042113 ! B cell activation +intersection_of: RO:0002212 GO:0042113 ! negatively regulates B cell activation +relationship: RO:0002212 GO:0042113 ! negatively regulates B cell activation [Term] id: GO:0050870 @@ -89591,12 +89091,12 @@ is_a: GO:0050863 ! regulation of T cell activation is_a: GO:0051251 ! positive regulation of lymphocyte activation is_a: GO:1903039 ! positive regulation of leukocyte cell-cell adhesion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042110 ! T cell activation +intersection_of: RO:0002213 GO:0042110 ! positively regulates T cell activation relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa relationship: never_in_taxon NCBITaxon:4896 ! Schizosaccharomyces pombe relationship: never_in_taxon NCBITaxon:4932 ! Saccharomyces cerevisiae -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa -relationship: positively_regulates GO:0042110 ! T cell activation +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa +relationship: RO:0002213 GO:0042110 ! positively regulates T cell activation [Term] id: GO:0050871 @@ -89614,8 +89114,8 @@ synonym: "upregulation of B cell activation" EXACT [] is_a: GO:0050864 ! regulation of B cell activation is_a: GO:0051251 ! positive regulation of lymphocyte activation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042113 ! B cell activation -relationship: positively_regulates GO:0042113 ! B cell activation +intersection_of: RO:0002213 GO:0042113 ! positively regulates B cell activation +relationship: RO:0002213 GO:0042113 ! positively regulates B cell activation [Term] id: GO:0050872 @@ -89626,8 +89126,8 @@ synonym: "white adipocyte cell differentiation" EXACT [] synonym: "white adipocyte differentiation" EXACT [] is_a: GO:0045444 ! fat cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000448 ! white adipocyte -relationship: results_in_acquisition_of_features_of CL:0000448 ! white adipocyte +intersection_of: RO:0002315 CL:0000448 ! results in acquisition of features of white adipocyte +relationship: RO:0002315 CL:0000448 ! results in acquisition of features of white adipocyte [Term] id: GO:0050873 @@ -89638,9 +89138,9 @@ synonym: "brown adipocyte cell differentiation" EXACT [] synonym: "brown adipocyte differentiation" EXACT [] is_a: GO:0045444 ! fat cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000449 ! brown adipocyte +intersection_of: RO:0002315 CL:0000449 ! results in acquisition of features of brown adipocyte relationship: never_in_taxon NCBITaxon:8782 ! Aves -relationship: results_in_acquisition_of_features_of CL:0000449 ! brown adipocyte +relationship: RO:0002315 CL:0000449 ! results in acquisition of features of brown adipocyte [Term] id: GO:0050877 @@ -89657,10 +89157,10 @@ synonym: "neurophysiological process" EXACT [] synonym: "pan-neural process" RELATED [] is_a: GO:0003008 ! system process intersection_of: GO:0003008 ! system process -intersection_of: has_participant UBERON:0001016 ! nervous system -relationship: has_participant UBERON:0001016 ! nervous system +intersection_of: RO:0000057 UBERON:0001016 ! has participant nervous system relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0000057 UBERON:0001016 ! has participant nervous system +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/13824" xsd:anyURI [Term] @@ -89735,8 +89235,8 @@ synonym: "multicellular organismal water homeostasis" EXACT [] is_a: GO:0050878 ! regulation of body fluid levels is_a: GO:0140962 ! multicellular organismal-level chemical homeostasis intersection_of: GO:0048871 ! multicellular organismal-level homeostasis -intersection_of: regulates_levels_of CHEBI:15377 ! water -relationship: regulates_levels_of CHEBI:15377 ! water +intersection_of: RO:0002332 CHEBI:15377 ! regulates levels of water +relationship: RO:0002332 CHEBI:15377 ! regulates levels of water property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24554" xsd:anyURI [Term] @@ -89769,10 +89269,10 @@ synonym: "leukocyte trafficking" EXACT [] is_a: GO:0002376 ! immune system process is_a: GO:0016477 ! cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000738 ! leukocyte +intersection_of: RO:0002565 CL:0000738 ! results in movement of leukocyte relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata -relationship: results_in_movement_of CL:0000738 ! leukocyte +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata +relationship: RO:0002565 CL:0000738 ! results in movement of leukocyte [Term] id: GO:0050905 @@ -89828,7 +89328,6 @@ synonym: "sensory transduction of light stimulus during visual perception" EXACT synonym: "visual perception, detection of light stimulus" EXACT [] synonym: "visual perception, sensory transduction during perception of light" EXACT [] synonym: "visual perception, sensory transduction of light stimulus" EXACT [] -is_a: GO:0009584 ! detection of visible light is_a: GO:0050962 ! detection of light stimulus involved in sensory perception intersection_of: GO:0009583 ! detection of light stimulus intersection_of: part_of GO:0007601 ! visual perception @@ -89912,9 +89411,9 @@ def: "Any process that modulates the frequency, rate or extent of the directed m is_a: GO:0032101 ! regulation of response to external stimulus is_a: GO:0040012 ! regulation of locomotion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006935 ! chemotaxis -relationship: regulates GO:0006935 ! chemotaxis -relationship: regulates GO:0009605 ! response to external stimulus +intersection_of: RO:0002211 GO:0006935 ! regulates (processual) chemotaxis +relationship: RO:0002211 GO:0006935 ! regulates (processual) chemotaxis +relationship: RO:0002211 GO:0009605 ! regulates (processual) response to external stimulus [Term] id: GO:0050921 @@ -89930,9 +89429,9 @@ is_a: GO:0032103 ! positive regulation of response to external stimulus is_a: GO:0040017 ! positive regulation of locomotion is_a: GO:0050920 ! regulation of chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006935 ! chemotaxis -relationship: positively_regulates GO:0006935 ! chemotaxis -relationship: positively_regulates GO:0009605 ! response to external stimulus +intersection_of: RO:0002213 GO:0006935 ! positively regulates chemotaxis +relationship: RO:0002213 GO:0006935 ! positively regulates chemotaxis +relationship: RO:0002213 GO:0009605 ! positively regulates response to external stimulus [Term] id: GO:0050922 @@ -89947,9 +89446,9 @@ is_a: GO:0032102 ! negative regulation of response to external stimulus is_a: GO:0040013 ! negative regulation of locomotion is_a: GO:0050920 ! regulation of chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006935 ! chemotaxis -relationship: negatively_regulates GO:0006935 ! chemotaxis -relationship: negatively_regulates GO:0009605 ! response to external stimulus +intersection_of: RO:0002212 GO:0006935 ! negatively regulates chemotaxis +relationship: RO:0002212 GO:0006935 ! negatively regulates chemotaxis +relationship: RO:0002212 GO:0009605 ! negatively regulates response to external stimulus [Term] id: GO:0050931 @@ -89963,9 +89462,9 @@ synonym: "chromatophore differentiation" EXACT [] synonym: "pigmented cell differentiation" EXACT [] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000147 ! pigment cell +intersection_of: RO:0002315 CL:0000147 ! results in acquisition of features of pigment cell relationship: part_of GO:0048066 ! developmental pigmentation -relationship: results_in_acquisition_of_features_of CL:0000147 ! pigment cell +relationship: RO:0002315 CL:0000147 ! results in acquisition of features of pigment cell [Term] id: GO:0050932 @@ -89974,8 +89473,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of pigmented cell differentiation." [GOC:ai] is_a: GO:0045595 ! regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0050931 ! pigment cell differentiation -relationship: regulates GO:0050931 ! pigment cell differentiation +intersection_of: RO:0002211 GO:0050931 ! regulates (processual) pigment cell differentiation +relationship: RO:0002211 GO:0050931 ! regulates (processual) pigment cell differentiation [Term] id: GO:0050935 @@ -89985,8 +89484,8 @@ def: "The process in which a relatively unspecialized cell acquires the speciali synonym: "iridophore cell differentiation" EXACT [] is_a: GO:0050931 ! pigment cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000431 ! iridophore -relationship: results_in_acquisition_of_features_of CL:0000431 ! iridophore +intersection_of: RO:0002315 CL:0000431 ! results in acquisition of features of iridophore +relationship: RO:0002315 CL:0000431 ! results in acquisition of features of iridophore [Term] id: GO:0050936 @@ -89997,8 +89496,8 @@ comment: Note that this term refers to xanthophores in the sense of specialized synonym: "xanthophore cell differentiation" EXACT [] is_a: GO:0050931 ! pigment cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000430 ! xanthophore cell -relationship: results_in_acquisition_of_features_of CL:0000430 ! xanthophore cell +intersection_of: RO:0002315 CL:0000430 ! results in acquisition of features of xanthophore cell +relationship: RO:0002315 CL:0000430 ! results in acquisition of features of xanthophore cell [Term] id: GO:0050937 @@ -90007,8 +89506,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of iridophore differentiation." [GOC:ai] is_a: GO:0050932 ! regulation of pigment cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0050935 ! iridophore differentiation -relationship: regulates GO:0050935 ! iridophore differentiation +intersection_of: RO:0002211 GO:0050935 ! regulates (processual) iridophore differentiation +relationship: RO:0002211 GO:0050935 ! regulates (processual) iridophore differentiation [Term] id: GO:0050938 @@ -90018,8 +89517,8 @@ def: "Any process that modulates the frequency, rate or extent of xanthophore di comment: Note that this term refers to xanthophores in the sense of specialized pigment-producing cells, and should not be confused with the cellular component term 'xanthophore ; GO:0031633', which refers to a subcellular structure. is_a: GO:0050932 ! regulation of pigment cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0050936 ! xanthophore differentiation -relationship: regulates GO:0050936 ! xanthophore differentiation +intersection_of: RO:0002211 GO:0050936 ! regulates (processual) xanthophore differentiation +relationship: RO:0002211 GO:0050936 ! regulates (processual) xanthophore differentiation [Term] id: GO:0050941 @@ -90034,8 +89533,8 @@ is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:0048086 ! negative regulation of developmental pigmentation is_a: GO:0050932 ! regulation of pigment cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0050931 ! pigment cell differentiation -relationship: negatively_regulates GO:0050931 ! pigment cell differentiation +intersection_of: RO:0002212 GO:0050931 ! negatively regulates pigment cell differentiation +relationship: RO:0002212 GO:0050931 ! negatively regulates pigment cell differentiation [Term] id: GO:0050942 @@ -90051,8 +89550,8 @@ is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:0048087 ! positive regulation of developmental pigmentation is_a: GO:0050932 ! regulation of pigment cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0050931 ! pigment cell differentiation -relationship: positively_regulates GO:0050931 ! pigment cell differentiation +intersection_of: RO:0002213 GO:0050931 ! positively regulates pigment cell differentiation +relationship: RO:0002213 GO:0050931 ! positively regulates pigment cell differentiation [Term] id: GO:0050943 @@ -90066,8 +89565,8 @@ synonym: "inhibition of iridophore differentiation" NARROW [] is_a: GO:0050937 ! regulation of iridophore differentiation is_a: GO:0050941 ! negative regulation of pigment cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0050935 ! iridophore differentiation -relationship: negatively_regulates GO:0050935 ! iridophore differentiation +intersection_of: RO:0002212 GO:0050935 ! negatively regulates iridophore differentiation +relationship: RO:0002212 GO:0050935 ! negatively regulates iridophore differentiation [Term] id: GO:0050944 @@ -90082,8 +89581,8 @@ synonym: "inhibition of xanthophore differentiation" NARROW [] is_a: GO:0050938 ! regulation of xanthophore differentiation is_a: GO:0050941 ! negative regulation of pigment cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0050936 ! xanthophore differentiation -relationship: negatively_regulates GO:0050936 ! xanthophore differentiation +intersection_of: RO:0002212 GO:0050936 ! negatively regulates xanthophore differentiation +relationship: RO:0002212 GO:0050936 ! negatively regulates xanthophore differentiation [Term] id: GO:0050945 @@ -90098,8 +89597,8 @@ synonym: "upregulation of iridophore differentiation" EXACT [] is_a: GO:0050937 ! regulation of iridophore differentiation is_a: GO:0050942 ! positive regulation of pigment cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0050935 ! iridophore differentiation -relationship: positively_regulates GO:0050935 ! iridophore differentiation +intersection_of: RO:0002213 GO:0050935 ! positively regulates iridophore differentiation +relationship: RO:0002213 GO:0050935 ! positively regulates iridophore differentiation [Term] id: GO:0050946 @@ -90115,8 +89614,8 @@ synonym: "upregulation of xanthophore differentiation" EXACT [] is_a: GO:0050938 ! regulation of xanthophore differentiation is_a: GO:0050942 ! positive regulation of pigment cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0050936 ! xanthophore differentiation -relationship: positively_regulates GO:0050936 ! xanthophore differentiation +intersection_of: RO:0002213 GO:0050936 ! positively regulates xanthophore differentiation +relationship: RO:0002213 GO:0050936 ! positively regulates xanthophore differentiation [Term] id: GO:0050951 @@ -90182,10 +89681,10 @@ is_a: GO:0050877 ! nervous system process relationship: in_taxon NCBITaxon:32524 {all_only="true", source="https://en.wikipedia.org/wiki/Animal_echolocation"} ! Amniota relationship: never_in_taxon NCBITaxon:10090 {source="PMID:34140356"} ! Mus musculus relationship: never_in_taxon NCBITaxon:9443 {source="PMID:34140356"} ! Primates -relationship: only_in_taxon NCBITaxon:32524 {source="https://en.wikipedia.org/wiki/Animal_echolocation"} ! Amniota relationship: present_in_taxon NCBITaxon:687454 {source="PMID:34140356"} relationship: present_in_taxon NCBITaxon:9397 {source="PMID:34140356"} ! Chiroptera relationship: present_in_taxon NCBITaxon:9722 {source="PMID:34140356"} ! Odontoceti +relationship: RO:0002160 NCBITaxon:32524 {source="https://en.wikipedia.org/wiki/Animal_echolocation"} ! only in taxon Amniota [Term] id: GO:0050961 @@ -90442,8 +89941,8 @@ synonym: "regulation of lipid degradation" EXACT [] is_a: GO:0009894 ! regulation of catabolic process is_a: GO:0019216 ! regulation of lipid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0016042 ! lipid catabolic process -relationship: regulates GO:0016042 ! lipid catabolic process +intersection_of: RO:0002211 GO:0016042 ! regulates (processual) lipid catabolic process +relationship: RO:0002211 GO:0016042 ! regulates (processual) lipid catabolic process [Term] id: GO:0050995 @@ -90461,8 +89960,8 @@ is_a: GO:0009895 ! negative regulation of catabolic process is_a: GO:0045833 ! negative regulation of lipid metabolic process is_a: GO:0050994 ! regulation of lipid catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0016042 ! lipid catabolic process -relationship: negatively_regulates GO:0016042 ! lipid catabolic process +intersection_of: RO:0002212 GO:0016042 ! negatively regulates lipid catabolic process +relationship: RO:0002212 GO:0016042 ! negatively regulates lipid catabolic process [Term] id: GO:0050996 @@ -90481,8 +89980,8 @@ is_a: GO:0009896 ! positive regulation of catabolic process is_a: GO:0045834 ! positive regulation of lipid metabolic process is_a: GO:0050994 ! regulation of lipid catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0016042 ! lipid catabolic process -relationship: positively_regulates GO:0016042 ! lipid catabolic process +intersection_of: RO:0002213 GO:0016042 ! positively regulates lipid catabolic process +relationship: RO:0002213 GO:0016042 ! positively regulates lipid catabolic process [Term] id: GO:0050997 @@ -90492,8 +89991,8 @@ def: "Binding to a quaternary ammonium group, including glycine betaine, choline synonym: "quaternary amine binding" EXACT [] is_a: GO:0036094 ! small molecule binding intersection_of: GO:0036094 ! small molecule binding -intersection_of: has_primary_input CHEBI:26469 ! quaternary nitrogen compound -relationship: has_primary_input CHEBI:26469 ! quaternary nitrogen compound +intersection_of: RO:0004009 CHEBI:26469 ! has primary input quaternary nitrogen compound +relationship: RO:0004009 CHEBI:26469 ! has primary input quaternary nitrogen compound [Term] id: GO:0051017 @@ -90507,8 +90006,8 @@ synonym: "actin cable formation" RELATED [GOC:mah] is_a: GO:0022607 ! cellular component assembly is_a: GO:0061572 ! actin filament bundle organization intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0032432 ! actin filament bundle -relationship: results_in_assembly_of GO:0032432 ! actin filament bundle +intersection_of: RO:0002588 GO:0032432 ! results in assembly of actin filament bundle +relationship: RO:0002588 GO:0032432 ! results in assembly of actin filament bundle [Term] id: GO:0051027 @@ -90517,8 +90016,8 @@ namespace: biological_process def: "The directed movement of RNA, deoxyribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] is_a: GO:0050657 ! nucleic acid transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:16991 ! deoxyribonucleic acid -relationship: has_primary_input CHEBI:16991 ! deoxyribonucleic acid +intersection_of: RO:0004009 CHEBI:16991 ! has primary input deoxyribonucleic acid +relationship: RO:0004009 CHEBI:16991 ! has primary input deoxyribonucleic acid [Term] id: GO:0051032 @@ -90528,9 +90027,9 @@ def: "Enables the transfer of nucleic acids from one side of a membrane to the o is_a: GO:0015932 ! nucleobase-containing compound transmembrane transporter activity is_a: GO:0022884 ! macromolecule transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:33696 ! nucleic acid -relationship: has_primary_input CHEBI:33696 ! nucleic acid +intersection_of: RO:0004009 CHEBI:33696 ! has primary input nucleic acid relationship: part_of GO:0050657 ! nucleic acid transport +relationship: RO:0004009 CHEBI:33696 ! has primary input nucleic acid [Term] id: GO:0051033 @@ -90540,9 +90039,9 @@ def: "Enables the transfer of RNA, ribonucleic acid, from one side of a membrane xref: Reactome:R-HSA-203906 "Exportin complex translocates pre-miRNA to cytosol" is_a: GO:0051032 ! nucleic acid transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:33697 ! ribonucleic acid -relationship: has_primary_input CHEBI:33697 ! ribonucleic acid +intersection_of: RO:0004009 CHEBI:33697 ! has primary input ribonucleic acid relationship: part_of GO:0050658 ! RNA transport +relationship: RO:0004009 CHEBI:33697 ! has primary input ribonucleic acid [Term] id: GO:0051035 @@ -90551,9 +90050,9 @@ namespace: molecular_function def: "Enables the transfer of DNA, deoxyribonucleic acid, from one side of a membrane to the other." [GOC:ai] is_a: GO:0051032 ! nucleic acid transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:16991 ! deoxyribonucleic acid -relationship: has_primary_input CHEBI:16991 ! deoxyribonucleic acid +intersection_of: RO:0004009 CHEBI:16991 ! has primary input deoxyribonucleic acid relationship: part_of GO:0051027 ! DNA transport +relationship: RO:0004009 CHEBI:16991 ! has primary input deoxyribonucleic acid [Term] id: GO:0051046 @@ -90562,8 +90061,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the controlled release of a substance from a cell or a tissue." [GOC:ai] is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0046903 ! secretion -relationship: regulates GO:0046903 ! secretion +intersection_of: RO:0002211 GO:0046903 ! regulates (processual) secretion +relationship: RO:0002211 GO:0046903 ! regulates (processual) secretion [Term] id: GO:0051047 @@ -90578,8 +90077,8 @@ synonym: "upregulation of secretion" EXACT [] is_a: GO:0051046 ! regulation of secretion is_a: GO:0051050 ! positive regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0046903 ! secretion -relationship: positively_regulates GO:0046903 ! secretion +intersection_of: RO:0002213 GO:0046903 ! positively regulates secretion +relationship: RO:0002213 GO:0046903 ! positively regulates secretion [Term] id: GO:0051048 @@ -90593,8 +90092,8 @@ synonym: "inhibition of secretion" NARROW [] is_a: GO:0051046 ! regulation of secretion is_a: GO:0051051 ! negative regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0046903 ! secretion -relationship: negatively_regulates GO:0046903 ! secretion +intersection_of: RO:0002212 GO:0046903 ! negatively regulates secretion +relationship: RO:0002212 GO:0046903 ! negatively regulates secretion [Term] id: GO:0051049 @@ -90604,8 +90103,8 @@ def: "Any process that modulates the frequency, rate or extent of the directed m subset: goslim_yeast is_a: GO:0032879 ! regulation of localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006810 ! transport -relationship: regulates GO:0006810 ! transport +intersection_of: RO:0002211 GO:0006810 ! regulates (processual) transport +relationship: RO:0002211 GO:0006810 ! regulates (processual) transport [Term] id: GO:0051050 @@ -90620,8 +90119,8 @@ synonym: "upregulation of transport" EXACT [] is_a: GO:0048518 ! positive regulation of biological process is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006810 ! transport -relationship: positively_regulates GO:0006810 ! transport +intersection_of: RO:0002213 GO:0006810 ! positively regulates transport +relationship: RO:0002213 GO:0006810 ! positively regulates transport [Term] id: GO:0051051 @@ -90635,8 +90134,8 @@ synonym: "inhibition of transport" NARROW [] is_a: GO:0048519 ! negative regulation of biological process is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006810 ! transport -relationship: negatively_regulates GO:0006810 ! transport +intersection_of: RO:0002212 GO:0006810 ! negatively regulates transport +relationship: RO:0002212 GO:0006810 ! negatively regulates transport [Term] id: GO:0051052 @@ -90648,8 +90147,8 @@ synonym: "regulation of DNA metabolism" EXACT [] is_a: GO:0019219 ! regulation of nucleobase-containing compound metabolic process is_a: GO:0060255 ! regulation of macromolecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006259 ! DNA metabolic process -relationship: regulates GO:0006259 ! DNA metabolic process +intersection_of: RO:0002211 GO:0006259 ! regulates (processual) DNA metabolic process +relationship: RO:0002211 GO:0006259 ! regulates (processual) DNA metabolic process [Term] id: GO:0051053 @@ -90665,8 +90164,8 @@ is_a: GO:0010605 ! negative regulation of macromolecule metabolic process is_a: GO:0045934 ! negative regulation of nucleobase-containing compound metabolic process is_a: GO:0051052 ! regulation of DNA metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006259 ! DNA metabolic process -relationship: negatively_regulates GO:0006259 ! DNA metabolic process +intersection_of: RO:0002212 GO:0006259 ! negatively regulates DNA metabolic process +relationship: RO:0002212 GO:0006259 ! negatively regulates DNA metabolic process [Term] id: GO:0051054 @@ -90683,8 +90182,8 @@ is_a: GO:0010604 ! positive regulation of macromolecule metabolic process is_a: GO:0045935 ! positive regulation of nucleobase-containing compound metabolic process is_a: GO:0051052 ! regulation of DNA metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006259 ! DNA metabolic process -relationship: positively_regulates GO:0006259 ! DNA metabolic process +intersection_of: RO:0002213 GO:0006259 ! positively regulates DNA metabolic process +relationship: RO:0002213 GO:0006259 ! positively regulates DNA metabolic process [Term] id: GO:0051055 @@ -90704,8 +90203,8 @@ is_a: GO:0009890 ! negative regulation of biosynthetic process is_a: GO:0045833 ! negative regulation of lipid metabolic process is_a: GO:0046890 ! regulation of lipid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008610 ! lipid biosynthetic process -relationship: negatively_regulates GO:0008610 ! lipid biosynthetic process +intersection_of: RO:0002212 GO:0008610 ! negatively regulates lipid biosynthetic process +relationship: RO:0002212 GO:0008610 ! negatively regulates lipid biosynthetic process [Term] id: GO:0051059 @@ -90714,8 +90213,8 @@ namespace: molecular_function def: "Binding to NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters." [GOC:ai] is_a: GO:0061629 ! RNA polymerase II-specific DNA-binding transcription factor binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input PR:000001753 ! transcription factor NF-kappa-B subunit -relationship: has_primary_input PR:000001753 ! transcription factor NF-kappa-B subunit +intersection_of: RO:0004009 PR:000001753 ! has primary input transcription factor NF-kappa-B subunit +relationship: RO:0004009 PR:000001753 ! has primary input transcription factor NF-kappa-B subunit [Term] id: GO:0051078 @@ -90758,52 +90257,9 @@ synonym: "nuclear envelope disassembly" RELATED [] is_a: GO:0030397 ! membrane disassembly is_a: GO:0071763 ! nuclear membrane organization intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0031965 ! nuclear membrane +intersection_of: RO:0002590 GO:0031965 ! results in disassembly of nuclear membrane relationship: part_of GO:0006998 ! nuclear envelope organization -relationship: results_in_disassembly_of GO:0031965 ! nuclear membrane - -[Term] -id: GO:0051090 -name: regulation of DNA-binding transcription factor activity -namespace: biological_process -alt_id: GO:1904167 -alt_id: GO:2000823 -def: "Any process that modulates the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription." [GOC:ai] -subset: gocheck_do_not_annotate -synonym: "regulation of androgen receptor activity" NARROW [] -synonym: "regulation of DNA binding transcription factor activity" EXACT [] -synonym: "regulation of sequence-specific DNA binding transcription factor activity" EXACT [] -synonym: "regulation of thyroid hormone receptor activity" NARROW [] -synonym: "regulation of transcription factor activity" BROAD [GOC:dph, GOC:tb] -is_a: GO:0006355 ! regulation of DNA-templated transcription -is_a: GO:0065009 ! regulation of molecular function -intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003700 ! DNA-binding transcription factor activity -relationship: regulates GO:0003700 ! DNA-binding transcription factor activity - -[Term] -id: GO:0051091 -name: positive regulation of DNA-binding transcription factor activity -namespace: biological_process -alt_id: GO:1904169 -def: "Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription." [GOC:ai] -subset: gocheck_do_not_annotate -synonym: "activation of transcription factor activity" NARROW [] -synonym: "positive regulation of DNA binding transcription factor activity" EXACT [] -synonym: "positive regulation of sequence-specific DNA binding transcription factor activity" EXACT [] -synonym: "positive regulation of thyroid hormone receptor activity" NARROW [] -synonym: "positive regulation of transcription factor activity" BROAD [GOC:dph, GOC:tb] -synonym: "stimulation of transcription factor activity" NARROW [] -synonym: "up regulation of transcription factor activity" EXACT [] -synonym: "up-regulation of transcription factor activity" EXACT [] -synonym: "upregulation of transcription factor activity" EXACT [] -is_a: GO:0044093 ! positive regulation of molecular function -is_a: GO:0051090 ! regulation of DNA-binding transcription factor activity -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003700 ! DNA-binding transcription factor activity -relationship: positively_regulates GO:0003700 ! DNA-binding transcription factor activity -created_by: rph -creation_date: 2015-04-22T12:22:16Z +relationship: RO:0002590 GO:0031965 ! results in disassembly of nuclear membrane [Term] id: GO:0051093 @@ -90817,8 +90273,8 @@ synonym: "inhibition of developmental process" NARROW [] is_a: GO:0048519 ! negative regulation of biological process is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032502 ! developmental process -relationship: negatively_regulates GO:0032502 ! developmental process +intersection_of: RO:0002212 GO:0032502 ! negatively regulates developmental process +relationship: RO:0002212 GO:0032502 ! negatively regulates developmental process [Term] id: GO:0051094 @@ -90833,8 +90289,8 @@ synonym: "upregulation of developmental process" EXACT [] is_a: GO:0048518 ! positive regulation of biological process is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032502 ! developmental process -relationship: positively_regulates GO:0032502 ! developmental process +intersection_of: RO:0002213 GO:0032502 ! positively regulates developmental process +relationship: RO:0002213 GO:0032502 ! positively regulates developmental process [Term] id: GO:0051098 @@ -90844,8 +90300,8 @@ def: "Any process that modulates the frequency, rate or extent of binding, the s subset: gocheck_do_not_annotate is_a: GO:0065009 ! regulation of molecular function intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0005488 ! binding -relationship: regulates GO:0005488 ! binding +intersection_of: RO:0002211 GO:0005488 ! regulates (processual) binding +relationship: RO:0002211 GO:0005488 ! regulates (processual) binding [Term] id: GO:0051099 @@ -90861,8 +90317,8 @@ synonym: "upregulation of binding" EXACT [] is_a: GO:0044093 ! positive regulation of molecular function is_a: GO:0051098 ! regulation of binding intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0005488 ! binding -relationship: positively_regulates GO:0005488 ! binding +intersection_of: RO:0002213 GO:0005488 ! positively regulates binding +relationship: RO:0002213 GO:0005488 ! positively regulates binding [Term] id: GO:0051100 @@ -90877,8 +90333,8 @@ synonym: "inhibition of binding" NARROW [] is_a: GO:0044092 ! negative regulation of molecular function is_a: GO:0051098 ! regulation of binding intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0005488 ! binding -relationship: negatively_regulates GO:0005488 ! binding +intersection_of: RO:0002212 GO:0005488 ! negatively regulates binding +relationship: RO:0002212 GO:0005488 ! negatively regulates binding [Term] id: GO:0051101 @@ -90888,8 +90344,8 @@ def: "Any process that modulates the frequency, rate or extent of DNA binding. D subset: gocheck_do_not_annotate is_a: GO:0051098 ! regulation of binding intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003677 ! DNA binding -relationship: regulates GO:0003677 ! DNA binding +intersection_of: RO:0002211 GO:0003677 ! regulates (processual) DNA binding +relationship: RO:0002211 GO:0003677 ! regulates (processual) DNA binding [Term] id: GO:0051119 @@ -90913,8 +90369,8 @@ synonym: "regulation of cellular component organisation" EXACT [] synonym: "regulation of cellular component organization and biogenesis" RELATED [GOC:mah] is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0016043 ! cellular component organization -relationship: regulates GO:0016043 ! cellular component organization +intersection_of: RO:0002211 GO:0016043 ! regulates (processual) cellular component organization +relationship: RO:0002211 GO:0016043 ! regulates (processual) cellular component organization [Term] id: GO:0051129 @@ -90930,8 +90386,8 @@ synonym: "negative regulation of cellular component organization and biogenesis" is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0016043 ! cellular component organization -relationship: negatively_regulates GO:0016043 ! cellular component organization +intersection_of: RO:0002212 GO:0016043 ! negatively regulates cellular component organization +relationship: RO:0002212 GO:0016043 ! negatively regulates cellular component organization [Term] id: GO:0051130 @@ -90948,8 +90404,8 @@ synonym: "upregulation of cell organization" EXACT [] is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0016043 ! cellular component organization -relationship: positively_regulates GO:0016043 ! cellular component organization +intersection_of: RO:0002213 GO:0016043 ! positively regulates cellular component organization +relationship: RO:0002213 GO:0016043 ! positively regulates cellular component organization [Term] id: GO:0051145 @@ -90959,8 +90415,8 @@ def: "The process in which a relatively unspecialized cell acquires specialized synonym: "nonstriated muscle cell differentiation" EXACT [] is_a: GO:0042692 ! muscle cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000192 ! smooth muscle cell -relationship: results_in_acquisition_of_features_of CL:0000192 ! smooth muscle cell +intersection_of: RO:0002315 CL:0000192 ! results in acquisition of features of smooth muscle cell +relationship: RO:0002315 CL:0000192 ! results in acquisition of features of smooth muscle cell [Term] id: GO:0051146 @@ -90970,8 +90426,8 @@ def: "The process in which a relatively unspecialized cell acquires specialized synonym: "voluntary muscle cell differentiation" NARROW [] is_a: GO:0042692 ! muscle cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000737 ! striated muscle cell -relationship: results_in_acquisition_of_features_of CL:0000737 ! striated muscle cell +intersection_of: RO:0002315 CL:0000737 ! results in acquisition of features of striated muscle cell +relationship: RO:0002315 CL:0000737 ! results in acquisition of features of striated muscle cell [Term] id: GO:0051147 @@ -90980,8 +90436,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of muscle cell differentiation." [CL:0000187, GOC:ai] is_a: GO:0045595 ! regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042692 ! muscle cell differentiation -relationship: regulates GO:0042692 ! muscle cell differentiation +intersection_of: RO:0002211 GO:0042692 ! regulates (processual) muscle cell differentiation +relationship: RO:0002211 GO:0042692 ! regulates (processual) muscle cell differentiation [Term] id: GO:0051148 @@ -90995,8 +90451,8 @@ synonym: "inhibition of muscle cell differentiation" NARROW [] is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:0051147 ! regulation of muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042692 ! muscle cell differentiation -relationship: negatively_regulates GO:0042692 ! muscle cell differentiation +intersection_of: RO:0002212 GO:0042692 ! negatively regulates muscle cell differentiation +relationship: RO:0002212 GO:0042692 ! negatively regulates muscle cell differentiation [Term] id: GO:0051149 @@ -91011,8 +90467,8 @@ synonym: "upregulation of muscle cell differentiation" EXACT [] is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:0051147 ! regulation of muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042692 ! muscle cell differentiation -relationship: positively_regulates GO:0042692 ! muscle cell differentiation +intersection_of: RO:0002213 GO:0042692 ! positively regulates muscle cell differentiation +relationship: RO:0002213 GO:0042692 ! positively regulates muscle cell differentiation [Term] id: GO:0051150 @@ -91021,8 +90477,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of smooth muscle cell differentiation." [CL:0000192, GOC:ai] is_a: GO:0051147 ! regulation of muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051145 ! smooth muscle cell differentiation -relationship: regulates GO:0051145 ! smooth muscle cell differentiation +intersection_of: RO:0002211 GO:0051145 ! regulates (processual) smooth muscle cell differentiation +relationship: RO:0002211 GO:0051145 ! regulates (processual) smooth muscle cell differentiation [Term] id: GO:0051151 @@ -91036,8 +90492,8 @@ synonym: "inhibition of smooth muscle cell differentiation" NARROW [] is_a: GO:0051148 ! negative regulation of muscle cell differentiation is_a: GO:0051150 ! regulation of smooth muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051145 ! smooth muscle cell differentiation -relationship: negatively_regulates GO:0051145 ! smooth muscle cell differentiation +intersection_of: RO:0002212 GO:0051145 ! negatively regulates smooth muscle cell differentiation +relationship: RO:0002212 GO:0051145 ! negatively regulates smooth muscle cell differentiation [Term] id: GO:0051152 @@ -91052,8 +90508,8 @@ synonym: "upregulation of smooth muscle cell differentiation" EXACT [] is_a: GO:0051149 ! positive regulation of muscle cell differentiation is_a: GO:0051150 ! regulation of smooth muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051145 ! smooth muscle cell differentiation -relationship: positively_regulates GO:0051145 ! smooth muscle cell differentiation +intersection_of: RO:0002213 GO:0051145 ! positively regulates smooth muscle cell differentiation +relationship: RO:0002213 GO:0051145 ! positively regulates smooth muscle cell differentiation [Term] id: GO:0051153 @@ -91062,8 +90518,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of striated muscle cell differentiation." [CL:0000737, GOC:ai] is_a: GO:0051147 ! regulation of muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051146 ! striated muscle cell differentiation -relationship: regulates GO:0051146 ! striated muscle cell differentiation +intersection_of: RO:0002211 GO:0051146 ! regulates (processual) striated muscle cell differentiation +relationship: RO:0002211 GO:0051146 ! regulates (processual) striated muscle cell differentiation [Term] id: GO:0051154 @@ -91077,8 +90533,8 @@ synonym: "inhibition of striated muscle cell differentiation" NARROW [] is_a: GO:0051148 ! negative regulation of muscle cell differentiation is_a: GO:0051153 ! regulation of striated muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051146 ! striated muscle cell differentiation -relationship: negatively_regulates GO:0051146 ! striated muscle cell differentiation +intersection_of: RO:0002212 GO:0051146 ! negatively regulates striated muscle cell differentiation +relationship: RO:0002212 GO:0051146 ! negatively regulates striated muscle cell differentiation [Term] id: GO:0051155 @@ -91093,8 +90549,8 @@ synonym: "upregulation of striated muscle cell differentiation" EXACT [] is_a: GO:0051149 ! positive regulation of muscle cell differentiation is_a: GO:0051153 ! regulation of striated muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051146 ! striated muscle cell differentiation -relationship: positively_regulates GO:0051146 ! striated muscle cell differentiation +intersection_of: RO:0002213 GO:0051146 ! positively regulates striated muscle cell differentiation +relationship: RO:0002213 GO:0051146 ! positively regulates striated muscle cell differentiation [Term] id: GO:0051168 @@ -91106,12 +90562,12 @@ synonym: "nucleus export" EXACT [] synonym: "substance nuclear export" EXACT [] is_a: GO:0006913 ! nucleocytoplasmic transport intersection_of: GO:0006810 ! transport -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0031981 ! nuclear lumen -intersection_of: results_in_transport_across GO:0005635 ! nuclear envelope -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0031981 ! nuclear lumen -relationship: results_in_transport_across GO:0005635 ! nuclear envelope +intersection_of: RO:0002338 GO:0031981 ! has target start location nuclear lumen +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005635 ! results in transport across nuclear envelope +relationship: RO:0002338 GO:0031981 ! has target start location nuclear lumen +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005635 ! results in transport across nuclear envelope [Term] id: GO:0051169 @@ -91123,10 +90579,10 @@ synonym: "nucleus transport" EXACT [] xref: Wikipedia:Nuclear_transport is_a: GO:0046907 ! intracellular transport intersection_of: GO:0006810 ! transport -intersection_of: occurs_in GO:0005622 ! intracellular anatomical structure -intersection_of: results_in_transport_to_from_or_in GO:0005634 ! nucleus -relationship: occurs_in GO:0005622 ! intracellular anatomical structure -relationship: results_in_transport_to_from_or_in GO:0005634 ! nucleus +intersection_of: BFO:0000066 GO:0005622 ! occurs in intracellular anatomical structure +intersection_of: RO:0002344 GO:0005634 ! results in transport to from or in nucleus +relationship: BFO:0000066 GO:0005622 ! occurs in intracellular anatomical structure +relationship: RO:0002344 GO:0005634 ! results in transport to from or in nucleus [Term] id: GO:0051170 @@ -91138,12 +90594,12 @@ synonym: "nuclear import" EXACT [] synonym: "nuclear translocation" EXACT [] is_a: GO:0006913 ! nucleocytoplasmic transport intersection_of: GO:0006810 ! transport -intersection_of: has_target_end_location GO:0031981 ! nuclear lumen -intersection_of: has_target_start_location GO:0005829 ! cytosol -intersection_of: results_in_transport_across GO:0005635 ! nuclear envelope -relationship: has_target_end_location GO:0031981 ! nuclear lumen -relationship: has_target_start_location GO:0005829 ! cytosol -relationship: results_in_transport_across GO:0005635 ! nuclear envelope +intersection_of: RO:0002338 GO:0005829 ! has target start location cytosol +intersection_of: RO:0002339 GO:0031981 ! has target end location nuclear lumen +intersection_of: RO:0002342 GO:0005635 ! results in transport across nuclear envelope +relationship: RO:0002338 GO:0005829 ! has target start location cytosol +relationship: RO:0002339 GO:0031981 ! has target end location nuclear lumen +relationship: RO:0002342 GO:0005635 ! results in transport across nuclear envelope created_by: jl creation_date: 2013-12-19T15:26:34Z @@ -91153,10 +90609,10 @@ name: regulation of phosphorus metabolic process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus." [GOC:ai] synonym: "regulation of phosphorus metabolism" EXACT [] -is_a: GO:0031323 ! regulation of cellular metabolic process +is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006793 ! phosphorus metabolic process -relationship: regulates GO:0006793 ! phosphorus metabolic process +intersection_of: RO:0002211 GO:0006793 ! regulates (processual) phosphorus metabolic process +relationship: RO:0002211 GO:0006793 ! regulates (processual) phosphorus metabolic process [Term] id: GO:0051175 @@ -91170,11 +90626,11 @@ synonym: "inhibition of sulfur metabolic process" NARROW [] synonym: "negative regulation of sulfur metabolism" EXACT [] synonym: "negative regulation of sulphur metabolic process" EXACT [] synonym: "negative regulation of sulphur metabolism" EXACT [] -is_a: GO:0031324 ! negative regulation of cellular metabolic process +is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0042762 ! regulation of sulfur metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006790 ! sulfur compound metabolic process -relationship: negatively_regulates GO:0006790 ! sulfur compound metabolic process +intersection_of: RO:0002212 GO:0006790 ! negatively regulates sulfur compound metabolic process +relationship: RO:0002212 GO:0006790 ! negatively regulates sulfur compound metabolic process [Term] id: GO:0051176 @@ -91189,11 +90645,11 @@ synonym: "stimulation of sulfur metabolic process" NARROW [] synonym: "up regulation of sulfur metabolic process" EXACT [] synonym: "up-regulation of sulfur metabolic process" EXACT [] synonym: "upregulation of sulfur metabolic process" EXACT [] -is_a: GO:0031325 ! positive regulation of cellular metabolic process +is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0042762 ! regulation of sulfur metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006790 ! sulfur compound metabolic process -relationship: positively_regulates GO:0006790 ! sulfur compound metabolic process +intersection_of: RO:0002213 GO:0006790 ! positively regulates sulfur compound metabolic process +relationship: RO:0002213 GO:0006790 ! positively regulates sulfur compound metabolic process [Term] id: GO:0051179 @@ -91233,9 +90689,9 @@ synonym: "sequestration of calcium ion (Ca2+)" EXACT [] synonym: "storage of calcium ion (Ca2+)" EXACT [] is_a: GO:0051651 ! maintenance of location in cell intersection_of: GO:0051235 ! maintenance of location -intersection_of: has_primary_input CHEBI:29108 ! calcium(2+) -relationship: has_primary_input CHEBI:29108 ! calcium(2+) +intersection_of: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) relationship: part_of GO:0006874 ! intracellular calcium ion homeostasis +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) [Term] id: GO:0051209 @@ -91256,14 +90712,14 @@ synonym: "release of stored calcium ion (Ca2+) into cytosol" EXACT [] is_a: GO:0051283 ! negative regulation of sequestering of calcium ion is_a: GO:0097553 ! calcium ion transmembrane import into cytosol intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29108 ! calcium(2+) -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0043231 ! intracellular membrane-bounded organelle -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:29108 ! calcium(2+) -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0043231 ! intracellular membrane-bounded organelle -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002338 GO:0043231 ! has target start location intracellular membrane-bounded organelle +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) +relationship: RO:0002338 GO:0043231 ! has target start location intracellular membrane-bounded organelle +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) [Term] id: GO:0051216 @@ -91279,10 +90735,10 @@ synonym: "chondrogenesis" EXACT [] xref: Wikipedia:Chondrogenesis is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0007844 ! cartilage element +intersection_of: RO:0002296 UBERON:0007844 ! results in development of cartilage element relationship: part_of GO:0001501 ! skeletal system development relationship: part_of GO:0061448 ! connective tissue development -relationship: results_in_development_of UBERON:0007844 ! cartilage element +relationship: RO:0002296 UBERON:0007844 ! results in development of cartilage element [Term] id: GO:0051222 @@ -91299,8 +90755,8 @@ is_a: GO:0051223 ! regulation of protein transport is_a: GO:1903829 ! positive regulation of protein localization is_a: GO:1904951 ! positive regulation of establishment of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0015031 ! protein transport -relationship: positively_regulates GO:0015031 ! protein transport +intersection_of: RO:0002213 GO:0015031 ! positively regulates protein transport +relationship: RO:0002213 GO:0015031 ! positively regulates protein transport [Term] id: GO:0051223 @@ -91310,8 +90766,8 @@ def: "Any process that modulates the frequency, rate or extent of the directed m is_a: GO:0051049 ! regulation of transport is_a: GO:0070201 ! regulation of establishment of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0015031 ! protein transport -relationship: regulates GO:0015031 ! protein transport +intersection_of: RO:0002211 GO:0015031 ! regulates (processual) protein transport +relationship: RO:0002211 GO:0015031 ! regulates (processual) protein transport [Term] id: GO:0051224 @@ -91327,8 +90783,8 @@ is_a: GO:0051223 ! regulation of protein transport is_a: GO:1903828 ! negative regulation of protein localization is_a: GO:1904950 ! negative regulation of establishment of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0015031 ! protein transport -relationship: negatively_regulates GO:0015031 ! protein transport +intersection_of: RO:0002212 GO:0015031 ! negatively regulates protein transport +relationship: RO:0002212 GO:0015031 ! negatively regulates protein transport [Term] id: GO:0051234 @@ -91373,8 +90829,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a multicellular organismal process, the processes pertinent to the function of a multicellular organism above the cellular level; includes the integrated processes of tissues and organs." [GOC:ai, GOC:dph, GOC:tb] is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032501 ! multicellular organismal process -relationship: regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002211 GO:0032501 ! regulates (processual) multicellular organismal process +relationship: RO:0002211 GO:0032501 ! regulates (processual) multicellular organismal process [Term] id: GO:0051240 @@ -91389,8 +90845,8 @@ synonym: "upregulation of multicellular organismal process" EXACT [] is_a: GO:0048518 ! positive regulation of biological process is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032501 ! multicellular organismal process -relationship: positively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process [Term] id: GO:0051241 @@ -91404,8 +90860,8 @@ synonym: "inhibition of multicellular organismal process" NARROW [] is_a: GO:0048519 ! negative regulation of biological process is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process [Term] id: GO:0051246 @@ -91418,8 +90874,8 @@ synonym: "regulation of cellular protein metabolism" RELATED [] synonym: "regulation of protein metabolism" EXACT [] is_a: GO:0080090 ! regulation of primary metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0019538 ! protein metabolic process -relationship: regulates GO:0019538 ! protein metabolic process +intersection_of: RO:0002211 GO:0019538 ! regulates (processual) protein metabolic process +relationship: RO:0002211 GO:0019538 ! regulates (processual) protein metabolic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23112" xsd:anyURI [Term] @@ -91444,8 +90900,8 @@ synonym: "upregulation of protein metabolic process" EXACT [] is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0051246 ! regulation of protein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0019538 ! protein metabolic process -relationship: positively_regulates GO:0019538 ! protein metabolic process +intersection_of: RO:0002213 GO:0019538 ! positively regulates protein metabolic process +relationship: RO:0002213 GO:0019538 ! positively regulates protein metabolic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23112" xsd:anyURI [Term] @@ -91468,8 +90924,8 @@ synonym: "negative regulation of protein metabolism" EXACT [] is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0051246 ! regulation of protein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0019538 ! protein metabolic process -relationship: negatively_regulates GO:0019538 ! protein metabolic process +intersection_of: RO:0002212 GO:0019538 ! negatively regulates protein metabolic process +relationship: RO:0002212 GO:0019538 ! negatively regulates protein metabolic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23112" xsd:anyURI [Term] @@ -91479,8 +90935,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of lymphocyte activation." [GOC:ai] is_a: GO:0002694 ! regulation of leukocyte activation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0046649 ! lymphocyte activation -relationship: regulates GO:0046649 ! lymphocyte activation +intersection_of: RO:0002211 GO:0046649 ! regulates (processual) lymphocyte activation +relationship: RO:0002211 GO:0046649 ! regulates (processual) lymphocyte activation [Term] id: GO:0051250 @@ -91494,8 +90950,8 @@ synonym: "inhibition of lymphocyte activation" NARROW [] is_a: GO:0002695 ! negative regulation of leukocyte activation is_a: GO:0051249 ! regulation of lymphocyte activation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0046649 ! lymphocyte activation -relationship: negatively_regulates GO:0046649 ! lymphocyte activation +intersection_of: RO:0002212 GO:0046649 ! negatively regulates lymphocyte activation +relationship: RO:0002212 GO:0046649 ! negatively regulates lymphocyte activation [Term] id: GO:0051251 @@ -91510,8 +90966,8 @@ synonym: "upregulation of lymphocyte activation" EXACT [] is_a: GO:0002696 ! positive regulation of leukocyte activation is_a: GO:0051249 ! regulation of lymphocyte activation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0046649 ! lymphocyte activation -relationship: positively_regulates GO:0046649 ! lymphocyte activation +intersection_of: RO:0002213 GO:0046649 ! positively regulates lymphocyte activation +relationship: RO:0002213 GO:0046649 ! positively regulates lymphocyte activation [Term] id: GO:0051252 @@ -91522,8 +90978,8 @@ synonym: "regulation of RNA metabolism" EXACT [] is_a: GO:0019219 ! regulation of nucleobase-containing compound metabolic process is_a: GO:0060255 ! regulation of macromolecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0016070 ! RNA metabolic process -relationship: regulates GO:0016070 ! RNA metabolic process +intersection_of: RO:0002211 GO:0016070 ! regulates (processual) RNA metabolic process +relationship: RO:0002211 GO:0016070 ! regulates (processual) RNA metabolic process [Term] id: GO:0051253 @@ -91539,8 +90995,8 @@ is_a: GO:0010605 ! negative regulation of macromolecule metabolic process is_a: GO:0045934 ! negative regulation of nucleobase-containing compound metabolic process is_a: GO:0051252 ! regulation of RNA metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0016070 ! RNA metabolic process -relationship: negatively_regulates GO:0016070 ! RNA metabolic process +intersection_of: RO:0002212 GO:0016070 ! negatively regulates RNA metabolic process +relationship: RO:0002212 GO:0016070 ! negatively regulates RNA metabolic process [Term] id: GO:0051254 @@ -91557,8 +91013,8 @@ is_a: GO:0010604 ! positive regulation of macromolecule metabolic process is_a: GO:0045935 ! positive regulation of nucleobase-containing compound metabolic process is_a: GO:0051252 ! regulation of RNA metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0016070 ! RNA metabolic process -relationship: positively_regulates GO:0016070 ! RNA metabolic process +intersection_of: RO:0002213 GO:0016070 ! positively regulates RNA metabolic process +relationship: RO:0002213 GO:0016070 ! positively regulates RNA metabolic process [Term] id: GO:0051258 @@ -91591,8 +91047,8 @@ def: "The chemical reactions and pathways involving beta-glucans, compounds comp synonym: "beta-glucan metabolism" EXACT [] is_a: GO:0044042 ! glucan metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:28793 ! beta-D-glucan -relationship: has_primary_input_or_output CHEBI:28793 ! beta-D-glucan +intersection_of: RO:0004007 CHEBI:28793 ! has primary input or output beta-D-glucan +relationship: RO:0004007 CHEBI:28793 ! has primary input or output beta-D-glucan [Term] id: GO:0051274 @@ -91606,8 +91062,8 @@ synonym: "beta-glucan synthesis" EXACT [] is_a: GO:0009250 ! glucan biosynthetic process is_a: GO:0051273 ! beta-glucan metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:28793 ! beta-D-glucan -relationship: has_primary_output CHEBI:28793 ! beta-D-glucan +intersection_of: RO:0004008 CHEBI:28793 ! has primary output beta-D-glucan +relationship: RO:0004008 CHEBI:28793 ! has primary output beta-D-glucan [Term] id: GO:0051275 @@ -91620,8 +91076,8 @@ synonym: "beta-glucan degradation" EXACT [] is_a: GO:0009251 ! glucan catabolic process is_a: GO:0051273 ! beta-glucan metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:28793 ! beta-D-glucan -relationship: has_primary_input CHEBI:28793 ! beta-D-glucan +intersection_of: RO:0004009 CHEBI:28793 ! has primary input beta-D-glucan +relationship: RO:0004009 CHEBI:28793 ! has primary input beta-D-glucan [Term] id: GO:0051276 @@ -91642,8 +91098,8 @@ synonym: "maintenance of genome integrity" RELATED [] synonym: "nuclear genome maintenance" RELATED [] is_a: GO:0006996 ! organelle organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005694 ! chromosome -relationship: results_in_organization_of GO:0005694 ! chromosome +intersection_of: RO:0002592 GO:0005694 ! results in organization of chromosome +relationship: RO:0002592 GO:0005694 ! results in organization of chromosome property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22811" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/4585" xsd:anyURI @@ -91663,8 +91119,8 @@ synonym: "regulation of release of stored calcium ion (Ca2+) into cytosol" EXACT is_a: GO:0051282 ! regulation of sequestering of calcium ion is_a: GO:1903169 ! regulation of calcium ion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051209 ! release of sequestered calcium ion into cytosol -relationship: regulates GO:0051209 ! release of sequestered calcium ion into cytosol +intersection_of: RO:0002211 GO:0051209 ! regulates (processual) release of sequestered calcium ion into cytosol +relationship: RO:0002211 GO:0051209 ! regulates (processual) release of sequestered calcium ion into cytosol [Term] id: GO:0051280 @@ -91690,8 +91146,8 @@ is_a: GO:0051279 ! regulation of release of sequestered calcium ion into cytosol is_a: GO:0051284 ! positive regulation of sequestering of calcium ion is_a: GO:1903170 ! negative regulation of calcium ion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051209 ! release of sequestered calcium ion into cytosol -relationship: negatively_regulates GO:0051209 ! release of sequestered calcium ion into cytosol +intersection_of: RO:0002212 GO:0051209 ! negatively regulates release of sequestered calcium ion into cytosol +relationship: RO:0002212 GO:0051209 ! negatively regulates release of sequestered calcium ion into cytosol [Term] id: GO:0051281 @@ -91717,8 +91173,8 @@ synonym: "upregulation of release of sequestered calcium ion into cytosol" EXACT is_a: GO:0051279 ! regulation of release of sequestered calcium ion into cytosol is_a: GO:1904427 ! positive regulation of calcium ion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051209 ! release of sequestered calcium ion into cytosol -relationship: positively_regulates GO:0051209 ! release of sequestered calcium ion into cytosol +intersection_of: RO:0002213 GO:0051209 ! positively regulates release of sequestered calcium ion into cytosol +relationship: RO:0002213 GO:0051209 ! positively regulates release of sequestered calcium ion into cytosol [Term] id: GO:0051282 @@ -91736,9 +91192,9 @@ synonym: "regulation of storage of calcium ion (Ca2+)" EXACT [] is_a: GO:0032879 ! regulation of localization is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051208 ! sequestering of calcium ion -relationship: regulates GO:0009987 ! cellular process -relationship: regulates GO:0051208 ! sequestering of calcium ion +intersection_of: RO:0002211 GO:0051208 ! regulates (processual) sequestering of calcium ion +relationship: RO:0002211 GO:0009987 ! regulates (processual) cellular process +relationship: RO:0002211 GO:0051208 ! regulates (processual) sequestering of calcium ion [Term] id: GO:0051283 @@ -91760,9 +91216,9 @@ synonym: "negative regulation of storage of calcium ion (Ca2+)" EXACT [] is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:0051282 ! regulation of sequestering of calcium ion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051208 ! sequestering of calcium ion -relationship: negatively_regulates GO:0009987 ! cellular process -relationship: negatively_regulates GO:0051208 ! sequestering of calcium ion +intersection_of: RO:0002212 GO:0051208 ! negatively regulates sequestering of calcium ion +relationship: RO:0002212 GO:0009987 ! negatively regulates cellular process +relationship: RO:0002212 GO:0051208 ! negatively regulates sequestering of calcium ion [Term] id: GO:0051284 @@ -91785,9 +91241,9 @@ synonym: "upregulation of sequestering of calcium ion" EXACT [] is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0051282 ! regulation of sequestering of calcium ion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051208 ! sequestering of calcium ion -relationship: positively_regulates GO:0009987 ! cellular process -relationship: positively_regulates GO:0051208 ! sequestering of calcium ion +intersection_of: RO:0002213 GO:0051208 ! positively regulates sequestering of calcium ion +relationship: RO:0002213 GO:0009987 ! positively regulates cellular process +relationship: RO:0002213 GO:0051208 ! positively regulates sequestering of calcium ion [Term] id: GO:0051301 @@ -91808,8 +91264,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the physical partitioning and separation of a cell into daughter cells." [GOC:go_curators] is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051301 ! cell division -relationship: regulates GO:0051301 ! cell division +intersection_of: RO:0002211 GO:0051301 ! regulates (processual) cell division +relationship: RO:0002211 GO:0051301 ! regulates (processual) cell division [Term] id: GO:0051303 @@ -91822,8 +91278,8 @@ is_a: GO:0050000 ! chromosome localization is_a: GO:0051649 ! establishment of localization in cell is_a: GO:0051656 ! establishment of organelle localization intersection_of: GO:0051234 ! establishment of localization -intersection_of: has_primary_input GO:0005694 ! chromosome -relationship: has_primary_input GO:0005694 ! chromosome +intersection_of: RO:0004009 GO:0005694 ! has primary input chromosome +relationship: RO:0004009 GO:0005694 ! has primary input chromosome [Term] id: GO:0051321 @@ -91842,8 +91298,8 @@ intersection_of: GO:0007049 ! cell cycle intersection_of: has_part GO:0140013 ! meiotic nuclear division relationship: has_part GO:0140013 ! meiotic nuclear division relationship: in_taxon NCBITaxon:2759 {all_only="true"} ! Eukaryota -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota relationship: part_of GO:0019953 ! sexual reproduction +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24599" xsd:anyURI [Term] @@ -91851,12 +91307,12 @@ id: GO:0051336 name: regulation of hydrolase activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of hydrolase activity, the catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3." [GOC:ai] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "hydrolase regulator" EXACT [] is_a: GO:0050790 ! regulation of catalytic activity intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0016787 ! hydrolase activity -relationship: regulates GO:0016787 ! hydrolase activity +intersection_of: RO:0002211 GO:0016787 ! regulates (processual) hydrolase activity +relationship: RO:0002211 GO:0016787 ! regulates (processual) hydrolase activity [Term] id: GO:0051338 @@ -91864,19 +91320,19 @@ name: regulation of transferase activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2." [GOC:ai] comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "transferase regulator" EXACT [] is_a: GO:0050790 ! regulation of catalytic activity intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0016740 ! transferase activity -relationship: regulates GO:0016740 ! transferase activity +intersection_of: RO:0002211 GO:0016740 ! regulates (processual) transferase activity +relationship: RO:0002211 GO:0016740 ! regulates (processual) transferase activity [Term] id: GO:0051345 name: positive regulation of hydrolase activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of hydrolase activity, the catalysis of the hydrolysis of various bonds." [GOC:ai] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "activation of hydrolase activity" NARROW [] synonym: "hydrolase activator" EXACT [] synonym: "stimulation of hydrolase activity" NARROW [] @@ -91886,15 +91342,15 @@ synonym: "upregulation of hydrolase activity" EXACT [] is_a: GO:0043085 ! positive regulation of catalytic activity is_a: GO:0051336 ! regulation of hydrolase activity intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0016787 ! hydrolase activity -relationship: positively_regulates GO:0016787 ! hydrolase activity +intersection_of: RO:0002213 GO:0016787 ! positively regulates hydrolase activity +relationship: RO:0002213 GO:0016787 ! positively regulates hydrolase activity [Term] id: GO:0051346 name: negative regulation of hydrolase activity namespace: biological_process def: "Any process that stops or reduces the rate of hydrolase activity, the catalysis of the hydrolysis of various bonds." [GOC:ai] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "down regulation of hydrolase activity" EXACT [] synonym: "down-regulation of hydrolase activity" EXACT [] synonym: "downregulation of hydrolase activity" EXACT [] @@ -91903,8 +91359,8 @@ synonym: "inhibition of hydrolase activity" NARROW [] is_a: GO:0043086 ! negative regulation of catalytic activity is_a: GO:0051336 ! regulation of hydrolase activity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0016787 ! hydrolase activity -relationship: negatively_regulates GO:0016787 ! hydrolase activity +intersection_of: RO:0002212 GO:0016787 ! negatively regulates hydrolase activity +relationship: RO:0002212 GO:0016787 ! negatively regulates hydrolase activity [Term] id: GO:0051347 @@ -91912,7 +91368,7 @@ name: positive regulation of transferase activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor." [GOC:ai] comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "activation of transferase activity" NARROW [] synonym: "stimulation of transferase activity" NARROW [] synonym: "transferase activator" EXACT [] @@ -91922,8 +91378,8 @@ synonym: "upregulation of transferase activity" EXACT [] is_a: GO:0043085 ! positive regulation of catalytic activity is_a: GO:0051338 ! regulation of transferase activity intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0016740 ! transferase activity -relationship: positively_regulates GO:0016740 ! transferase activity +intersection_of: RO:0002213 GO:0016740 ! positively regulates transferase activity +relationship: RO:0002213 GO:0016740 ! positively regulates transferase activity [Term] id: GO:0051348 @@ -91931,7 +91387,7 @@ name: negative regulation of transferase activity namespace: biological_process def: "Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor." [GOC:ai] comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "down regulation of transferase activity" EXACT [] synonym: "down-regulation of transferase activity" EXACT [] synonym: "downregulation of transferase activity" EXACT [] @@ -91940,8 +91396,8 @@ synonym: "transferase inhibitor" EXACT [] is_a: GO:0043086 ! negative regulation of catalytic activity is_a: GO:0051338 ! regulation of transferase activity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0016740 ! transferase activity -relationship: negatively_regulates GO:0016740 ! transferase activity +intersection_of: RO:0002212 GO:0016740 ! negatively regulates transferase activity +relationship: RO:0002212 GO:0016740 ! negatively regulates transferase activity [Term] id: GO:0051355 @@ -91978,8 +91434,8 @@ synonym: "5-hydroxytryptamine binding" EXACT [] is_a: GO:0043169 ! cation binding is_a: GO:0043176 ! amine binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:350546 ! serotonin(1+) -relationship: has_primary_input CHEBI:350546 ! serotonin(1+) +intersection_of: RO:0004009 CHEBI:350546 ! has primary input serotonin(1+) +relationship: RO:0004009 CHEBI:350546 ! has primary input serotonin(1+) [Term] id: GO:0051379 @@ -91990,8 +91446,8 @@ synonym: "adrenaline binding" EXACT [] is_a: GO:0042562 ! hormone binding is_a: GO:0043169 ! cation binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:71406 ! (R)-adrenaline(1+) -relationship: has_primary_input CHEBI:71406 ! (R)-adrenaline(1+) +intersection_of: RO:0004009 CHEBI:71406 ! has primary input (R)-adrenaline(1+) +relationship: RO:0004009 CHEBI:71406 ! has primary input (R)-adrenaline(1+) property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/21211" xsd:anyURI [Term] @@ -92002,8 +91458,8 @@ def: "Binding to norepinephrine, (3,4-dihydroxyphenyl-2-aminoethanol), a hormone synonym: "noradrenaline binding" EXACT [] is_a: GO:0043169 ! cation binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) -relationship: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) +intersection_of: RO:0004009 CHEBI:72587 ! has primary input (R)-noradrenaline(1+) +relationship: RO:0004009 CHEBI:72587 ! has primary input (R)-noradrenaline(1+) [Term] id: GO:0051381 @@ -92012,8 +91468,8 @@ namespace: molecular_function def: "Binding to histamine, a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans." [GOC:ai] is_a: GO:0043169 ! cation binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:58432 ! histaminium -relationship: has_primary_input CHEBI:58432 ! histaminium +intersection_of: RO:0004009 CHEBI:58432 ! has primary input histaminium +relationship: RO:0004009 CHEBI:58432 ! has primary input histaminium [Term] id: GO:0051384 @@ -92023,8 +91479,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to glucocorticoid stimulus" EXACT [GOC:dos] is_a: GO:0031960 ! response to corticosteroid intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:24261 ! glucocorticoid -relationship: has_primary_input CHEBI:24261 ! glucocorticoid +intersection_of: RO:0004009 CHEBI:24261 ! has primary input glucocorticoid +relationship: RO:0004009 CHEBI:24261 ! has primary input glucocorticoid [Term] id: GO:0051385 @@ -92034,8 +91490,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to mineralocorticoid stimulus" EXACT [GOC:dos] is_a: GO:0031960 ! response to corticosteroid intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:25354 ! mineralocorticoid -relationship: has_primary_input CHEBI:25354 ! mineralocorticoid +intersection_of: RO:0004009 CHEBI:25354 ! has primary input mineralocorticoid +relationship: RO:0004009 CHEBI:25354 ! has primary input mineralocorticoid [Term] id: GO:0051402 @@ -92054,8 +91510,8 @@ synonym: "programmed cell death, neuronal cells" EXACT [] synonym: "programmed cell death, neurons" EXACT [] is_a: GO:0006915 ! apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000540 ! neuron -relationship: occurs_in CL:0000540 ! neuron +intersection_of: BFO:0000066 CL:0000540 ! occurs in neuron +relationship: BFO:0000066 CL:0000540 ! occurs in neuron [Term] id: GO:0051410 @@ -92066,9 +91522,9 @@ synonym: "detoxification of nitrogenous compound" EXACT [] synonym: "nitric oxide (NO) detoxification" NARROW [] is_a: GO:0098754 ! detoxification intersection_of: GO:0098754 ! detoxification -intersection_of: has_primary_input CHEBI:51143 ! nitrogen molecular entity -relationship: has_primary_input CHEBI:51143 ! nitrogen molecular entity +intersection_of: RO:0004009 CHEBI:51143 ! has primary input nitrogen molecular entity relationship: part_of GO:1901698 ! response to nitrogen compound +relationship: RO:0004009 CHEBI:51143 ! has primary input nitrogen molecular entity [Term] id: GO:0051445 @@ -92084,8 +91540,8 @@ synonym: "regulation of progression through meiotic cell cycle" EXACT [GOC:dph, is_a: GO:0051726 ! regulation of cell cycle is_a: GO:2000241 ! regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051321 ! meiotic cell cycle -relationship: regulates GO:0051321 ! meiotic cell cycle +intersection_of: RO:0002211 GO:0051321 ! regulates (processual) meiotic cell cycle +relationship: RO:0002211 GO:0051321 ! regulates (processual) meiotic cell cycle [Term] id: GO:0051446 @@ -92103,8 +91559,8 @@ is_a: GO:0045787 ! positive regulation of cell cycle is_a: GO:0051445 ! regulation of meiotic cell cycle is_a: GO:2000243 ! positive regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051321 ! meiotic cell cycle -relationship: positively_regulates GO:0051321 ! meiotic cell cycle +intersection_of: RO:0002213 GO:0051321 ! positively regulates meiotic cell cycle +relationship: RO:0002213 GO:0051321 ! positively regulates meiotic cell cycle [Term] id: GO:0051447 @@ -92121,8 +91577,8 @@ is_a: GO:0045786 ! negative regulation of cell cycle is_a: GO:0051445 ! regulation of meiotic cell cycle is_a: GO:2000242 ! negative regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051321 ! meiotic cell cycle -relationship: negatively_regulates GO:0051321 ! meiotic cell cycle +intersection_of: RO:0002212 GO:0051321 ! negatively regulates meiotic cell cycle +relationship: RO:0002212 GO:0051321 ! negatively regulates meiotic cell cycle [Term] id: GO:0051450 @@ -92131,8 +91587,8 @@ namespace: biological_process def: "The multiplication or reproduction of myoblasts, resulting in the expansion of a myoblast cell population. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers." [CL:0000056, GOC:ai, GOC:mtg_muscle] is_a: GO:0008283 ! cell population proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000056 ! myoblast -relationship: acts_on_population_of CL:0000056 ! myoblast +intersection_of: RO:0012003 CL:0000056 ! acts on population of myoblast +relationship: RO:0012003 CL:0000056 ! acts on population of myoblast [Term] id: GO:0051451 @@ -92141,8 +91597,8 @@ namespace: biological_process def: "The orderly movement of a myoblast from one site to another, often during the development of a multicellular organism. A myoblast is a cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers." [CL:0000056, GOC:ai, GOC:mtg_muscle] is_a: GO:0014812 ! muscle cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000056 ! myoblast -relationship: results_in_movement_of CL:0000056 ! myoblast +intersection_of: RO:0002565 CL:0000056 ! results in movement of myoblast +relationship: RO:0002565 CL:0000056 ! results in movement of myoblast [Term] id: GO:0051457 @@ -92163,11 +91619,11 @@ synonym: "sequestration of protein in nucleus" NARROW [] synonym: "storage of protein in nucleus" NARROW [] is_a: GO:0072595 ! maintenance of protein localization in organelle intersection_of: GO:0045185 ! maintenance of protein location -intersection_of: occurs_in GO:0005634 ! nucleus +intersection_of: BFO:0000066 GO:0005634 ! occurs in nucleus +relationship: BFO:0000066 GO:0005634 ! occurs in nucleus relationship: in_taxon NCBITaxon:2759 {all_only="true"} ! Eukaryota -relationship: occurs_in GO:0005634 ! nucleus -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota relationship: part_of GO:0034504 ! protein localization to nucleus +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota [Term] id: GO:0051458 @@ -92183,8 +91639,8 @@ synonym: "corticotropic hormone secretion" EXACT [] is_a: GO:0030072 ! peptide hormone secretion is_a: GO:0060986 ! endocrine hormone secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:3892 ! corticotropin -relationship: has_primary_input CHEBI:3892 ! corticotropin +intersection_of: RO:0004009 CHEBI:3892 ! has primary input corticotropin +relationship: RO:0004009 CHEBI:3892 ! has primary input corticotropin [Term] id: GO:0051459 @@ -92200,9 +91656,9 @@ synonym: "regulation of corticotropic hormone secretion" EXACT [] is_a: GO:0044060 ! regulation of endocrine process is_a: GO:0090276 ! regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051458 ! corticotropin secretion -relationship: regulates GO:0050886 ! endocrine process -relationship: regulates GO:0051458 ! corticotropin secretion +intersection_of: RO:0002211 GO:0051458 ! regulates (processual) corticotropin secretion +relationship: RO:0002211 GO:0050886 ! regulates (processual) endocrine process +relationship: RO:0002211 GO:0051458 ! regulates (processual) corticotropin secretion [Term] id: GO:0051460 @@ -92223,9 +91679,9 @@ is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:0051459 ! regulation of corticotropin secretion is_a: GO:0090278 ! negative regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051458 ! corticotropin secretion -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0051458 ! corticotropin secretion +intersection_of: RO:0002212 GO:0051458 ! negatively regulates corticotropin secretion +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0051458 ! negatively regulates corticotropin secretion [Term] id: GO:0051461 @@ -92247,9 +91703,9 @@ is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:0051459 ! regulation of corticotropin secretion is_a: GO:0090277 ! positive regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051458 ! corticotropin secretion -relationship: positively_regulates GO:0032501 ! multicellular organismal process -relationship: positively_regulates GO:0051458 ! corticotropin secretion +intersection_of: RO:0002213 GO:0051458 ! positively regulates corticotropin secretion +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process +relationship: RO:0002213 GO:0051458 ! positively regulates corticotropin secretion [Term] id: GO:0051469 @@ -92262,10 +91718,10 @@ synonym: "heterotypic vacuole fusion, non-autophagic" RELATED [] is_a: GO:0006906 ! vesicle fusion is_a: GO:0097576 ! vacuole fusion intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_fusion_of GO:0005773 ! vacuole -intersection_of: results_in_fusion_of GO:0031982 ! vesicle -relationship: results_in_fusion_of GO:0005773 ! vacuole -relationship: results_in_fusion_of GO:0031982 ! vesicle +intersection_of: RO:0012008 GO:0005773 ! results in fusion of vacuole +intersection_of: RO:0012008 GO:0031982 ! results in fusion of vesicle +relationship: RO:0012008 GO:0005773 ! results in fusion of vacuole +relationship: RO:0012008 GO:0031982 ! results in fusion of vesicle [Term] id: GO:0051493 @@ -92276,8 +91732,8 @@ synonym: "regulation of cytoskeleton organisation" EXACT [GOC:mah] synonym: "regulation of cytoskeleton organization and biogenesis" RELATED [GOC:mah] is_a: GO:0033043 ! regulation of organelle organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007010 ! cytoskeleton organization -relationship: regulates GO:0007010 ! cytoskeleton organization +intersection_of: RO:0002211 GO:0007010 ! regulates (processual) cytoskeleton organization +relationship: RO:0002211 GO:0007010 ! regulates (processual) cytoskeleton organization [Term] id: GO:0051494 @@ -92293,8 +91749,8 @@ synonym: "negative regulation of cytoskeleton organization and biogenesis" RELAT is_a: GO:0010639 ! negative regulation of organelle organization is_a: GO:0051493 ! regulation of cytoskeleton organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007010 ! cytoskeleton organization -relationship: negatively_regulates GO:0007010 ! cytoskeleton organization +intersection_of: RO:0002212 GO:0007010 ! negatively regulates cytoskeleton organization +relationship: RO:0002212 GO:0007010 ! negatively regulates cytoskeleton organization [Term] id: GO:0051495 @@ -92311,8 +91767,8 @@ synonym: "upregulation of cytoskeleton organization" EXACT [] is_a: GO:0010638 ! positive regulation of organelle organization is_a: GO:0051493 ! regulation of cytoskeleton organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007010 ! cytoskeleton organization -relationship: positively_regulates GO:0007010 ! cytoskeleton organization +intersection_of: RO:0002213 GO:0007010 ! positively regulates cytoskeleton organization +relationship: RO:0002213 GO:0007010 ! positively regulates cytoskeleton organization [Term] id: GO:0051503 @@ -92321,8 +91777,8 @@ namespace: biological_process def: "The directed movement of adenine nucleotides, ATP, ADP, and/or AMP, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] is_a: GO:0015865 ! purine nucleotide transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:61293 ! adenyl nucleotide -relationship: has_primary_input CHEBI:61293 ! adenyl nucleotide +intersection_of: RO:0004009 CHEBI:61293 ! has primary input adenyl nucleotide +relationship: RO:0004009 CHEBI:61293 ! has primary input adenyl nucleotide [Term] id: GO:0051546 @@ -92331,9 +91787,9 @@ namespace: biological_process def: "The directed movement of a keratinocyte, epidermal cells which synthesize keratin, from one site to another." [ISBN:0721662544] is_a: GO:0010631 ! epithelial cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000312 ! keratinocyte +intersection_of: RO:0002565 CL:0000312 ! results in movement of keratinocyte relationship: never_in_taxon NCBITaxon:6656 ! Arthropoda -relationship: results_in_movement_of CL:0000312 ! keratinocyte +relationship: RO:0002565 CL:0000312 ! results in movement of keratinocyte [Term] id: GO:0051547 @@ -92342,8 +91798,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of keratinocyte migration." [GOC:ai] is_a: GO:0010632 ! regulation of epithelial cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051546 ! keratinocyte migration -relationship: regulates GO:0051546 ! keratinocyte migration +intersection_of: RO:0002211 GO:0051546 ! regulates (processual) keratinocyte migration +relationship: RO:0002211 GO:0051546 ! regulates (processual) keratinocyte migration [Term] id: GO:0051548 @@ -92357,8 +91813,8 @@ synonym: "inhibition of keratinocyte migration" NARROW [] is_a: GO:0010633 ! negative regulation of epithelial cell migration is_a: GO:0051547 ! regulation of keratinocyte migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051546 ! keratinocyte migration -relationship: negatively_regulates GO:0051546 ! keratinocyte migration +intersection_of: RO:0002212 GO:0051546 ! negatively regulates keratinocyte migration +relationship: RO:0002212 GO:0051546 ! negatively regulates keratinocyte migration [Term] id: GO:0051549 @@ -92373,8 +91829,8 @@ synonym: "upregulation of keratinocyte migration" EXACT [] is_a: GO:0010634 ! positive regulation of epithelial cell migration is_a: GO:0051547 ! regulation of keratinocyte migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051546 ! keratinocyte migration -relationship: positively_regulates GO:0051546 ! keratinocyte migration +intersection_of: RO:0002213 GO:0051546 ! positively regulates keratinocyte migration +relationship: RO:0002213 GO:0051546 ! positively regulates keratinocyte migration [Term] id: GO:0051580 @@ -92386,8 +91842,8 @@ synonym: "regulation of neurotransmitter import" EXACT [GOC:dph, GOC:tb] synonym: "regulation of neurotransmitter reuptake" EXACT [] is_a: GO:0051588 ! regulation of neurotransmitter transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001504 ! neurotransmitter uptake -relationship: regulates GO:0001504 ! neurotransmitter uptake +intersection_of: RO:0002211 GO:0001504 ! regulates (processual) neurotransmitter uptake +relationship: RO:0002211 GO:0001504 ! regulates (processual) neurotransmitter uptake [Term] id: GO:0051581 @@ -92401,8 +91857,8 @@ synonym: "negative regulation of neurotransmitter import" EXACT [GOC:dph, GOC:tb is_a: GO:0051580 ! regulation of neurotransmitter uptake is_a: GO:0051589 ! negative regulation of neurotransmitter transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001504 ! neurotransmitter uptake -relationship: negatively_regulates GO:0001504 ! neurotransmitter uptake +intersection_of: RO:0002212 GO:0001504 ! negatively regulates neurotransmitter uptake +relationship: RO:0002212 GO:0001504 ! negatively regulates neurotransmitter uptake [Term] id: GO:0051582 @@ -92418,8 +91874,8 @@ synonym: "upregulation of neurotransmitter uptake" EXACT [] is_a: GO:0051580 ! regulation of neurotransmitter uptake is_a: GO:0051590 ! positive regulation of neurotransmitter transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001504 ! neurotransmitter uptake -relationship: positively_regulates GO:0001504 ! neurotransmitter uptake +intersection_of: RO:0002213 GO:0001504 ! positively regulates neurotransmitter uptake +relationship: RO:0002213 GO:0001504 ! positively regulates neurotransmitter uptake [Term] id: GO:0051588 @@ -92428,8 +91884,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the directed movement of a neurotransmitter into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006836 ! neurotransmitter transport -relationship: regulates GO:0006836 ! neurotransmitter transport +intersection_of: RO:0002211 GO:0006836 ! regulates (processual) neurotransmitter transport +relationship: RO:0002211 GO:0006836 ! regulates (processual) neurotransmitter transport [Term] id: GO:0051589 @@ -92443,8 +91899,8 @@ synonym: "inhibition of neurotransmitter transport" NARROW [] is_a: GO:0051051 ! negative regulation of transport is_a: GO:0051588 ! regulation of neurotransmitter transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006836 ! neurotransmitter transport -relationship: negatively_regulates GO:0006836 ! neurotransmitter transport +intersection_of: RO:0002212 GO:0006836 ! negatively regulates neurotransmitter transport +relationship: RO:0002212 GO:0006836 ! negatively regulates neurotransmitter transport [Term] id: GO:0051590 @@ -92459,8 +91915,8 @@ synonym: "upregulation of neurotransmitter transport" EXACT [] is_a: GO:0051050 ! positive regulation of transport is_a: GO:0051588 ! regulation of neurotransmitter transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006836 ! neurotransmitter transport -relationship: positively_regulates GO:0006836 ! neurotransmitter transport +intersection_of: RO:0002213 GO:0006836 ! positively regulates neurotransmitter transport +relationship: RO:0002213 GO:0006836 ! positively regulates neurotransmitter transport [Term] id: GO:0051592 @@ -92470,8 +91926,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to Ca2+ ion" EXACT [] is_a: GO:0010038 ! response to metal ion intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:29108 ! calcium(2+) -relationship: has_primary_input CHEBI:29108 ! calcium(2+) +intersection_of: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) [Term] id: GO:0051602 @@ -92533,8 +91989,8 @@ namespace: biological_process def: "The directed movement of histamine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Histamine is a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans." [GOC:ai] is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:58432 ! histaminium -relationship: has_primary_input CHEBI:58432 ! histaminium +intersection_of: RO:0004009 CHEBI:58432 ! has primary input histaminium +relationship: RO:0004009 CHEBI:58432 ! has primary input histaminium [Term] id: GO:0051615 @@ -92546,12 +92002,12 @@ is_a: GO:0001504 ! neurotransmitter uptake is_a: GO:0051608 ! histamine transport is_a: GO:0098657 ! import into cell intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:58432 ! histaminium -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005576 ! extracellular region -relationship: has_primary_input CHEBI:58432 ! histaminium -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005576 ! extracellular region +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0004009 CHEBI:58432 ! has primary input histaminium +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0004009 CHEBI:58432 ! has primary input histaminium [Term] id: GO:0051616 @@ -92561,8 +92017,8 @@ def: "Any process that modulates the frequency, rate or extent of the directed m synonym: "regulation of histamine import" EXACT [GOC:dph, GOC:tb] is_a: GO:0051580 ! regulation of neurotransmitter uptake intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051615 ! histamine uptake -relationship: regulates GO:0051615 ! histamine uptake +intersection_of: RO:0002211 GO:0051615 ! regulates (processual) histamine uptake +relationship: RO:0002211 GO:0051615 ! regulates (processual) histamine uptake [Term] id: GO:0051617 @@ -92576,8 +92032,8 @@ synonym: "negative regulation of histamine import" EXACT [GOC:dph, GOC:tb] is_a: GO:0051581 ! negative regulation of neurotransmitter uptake is_a: GO:0051616 ! regulation of histamine uptake intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051615 ! histamine uptake -relationship: negatively_regulates GO:0051615 ! histamine uptake +intersection_of: RO:0002212 GO:0051615 ! negatively regulates histamine uptake +relationship: RO:0002212 GO:0051615 ! negatively regulates histamine uptake [Term] id: GO:0051618 @@ -92593,8 +92049,8 @@ synonym: "upregulation of histamine uptake" EXACT [] is_a: GO:0051582 ! positive regulation of neurotransmitter uptake is_a: GO:0051616 ! regulation of histamine uptake intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051615 ! histamine uptake -relationship: positively_regulates GO:0051615 ! histamine uptake +intersection_of: RO:0002213 GO:0051615 ! positively regulates histamine uptake +relationship: RO:0002213 GO:0051615 ! positively regulates histamine uptake [Term] id: GO:0051620 @@ -92610,12 +92066,12 @@ synonym: "norepinephrine reuptake" EXACT [] is_a: GO:0015874 ! norepinephrine transport is_a: GO:0090493 ! catecholamine uptake intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) -intersection_of: has_target_end_location GO:0005622 ! intracellular anatomical structure -intersection_of: has_target_start_location GO:0005576 ! extracellular region -relationship: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) -relationship: has_target_end_location GO:0005622 ! intracellular anatomical structure -relationship: has_target_start_location GO:0005576 ! extracellular region +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005622 ! has target end location intracellular anatomical structure +intersection_of: RO:0004009 CHEBI:72587 ! has primary input (R)-noradrenaline(1+) +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005622 ! has target end location intracellular anatomical structure +relationship: RO:0004009 CHEBI:72587 ! has primary input (R)-noradrenaline(1+) [Term] id: GO:0051621 @@ -92627,8 +92083,8 @@ synonym: "regulation of noradrenaline uptake" EXACT [] synonym: "regulation of norepinephrine import" EXACT [GOC:dph, GOC:tb] is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051620 ! norepinephrine uptake -relationship: regulates GO:0051620 ! norepinephrine uptake +intersection_of: RO:0002211 GO:0051620 ! regulates (processual) norepinephrine uptake +relationship: RO:0002211 GO:0051620 ! regulates (processual) norepinephrine uptake [Term] id: GO:0051622 @@ -92644,8 +92100,8 @@ synonym: "negative regulation of norepinephrine import" EXACT [GOC:dph, GOC:tb] is_a: GO:0051051 ! negative regulation of transport is_a: GO:0051621 ! regulation of norepinephrine uptake intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051620 ! norepinephrine uptake -relationship: negatively_regulates GO:0051620 ! norepinephrine uptake +intersection_of: RO:0002212 GO:0051620 ! negatively regulates norepinephrine uptake +relationship: RO:0002212 GO:0051620 ! negatively regulates norepinephrine uptake [Term] id: GO:0051623 @@ -92663,8 +92119,8 @@ synonym: "upregulation of norepinephrine uptake" EXACT [] is_a: GO:0051050 ! positive regulation of transport is_a: GO:0051621 ! regulation of norepinephrine uptake intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051620 ! norepinephrine uptake -relationship: positively_regulates GO:0051620 ! norepinephrine uptake +intersection_of: RO:0002213 GO:0051620 ! positively regulates norepinephrine uptake +relationship: RO:0002213 GO:0051620 ! positively regulates norepinephrine uptake [Term] id: GO:0051630 @@ -92674,12 +92130,12 @@ def: "The directed movement of acetylcholine into a cell, typically presynaptic synonym: "acetylcholine import" EXACT [GOC:dph, GOC:tb] is_a: GO:0015870 ! acetylcholine transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:15355 ! acetylcholine -intersection_of: has_target_end_location GO:0005622 ! intracellular anatomical structure -intersection_of: has_target_start_location GO:0005576 ! extracellular region -relationship: has_primary_input CHEBI:15355 ! acetylcholine -relationship: has_target_end_location GO:0005622 ! intracellular anatomical structure -relationship: has_target_start_location GO:0005576 ! extracellular region +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005622 ! has target end location intracellular anatomical structure +intersection_of: RO:0004009 CHEBI:15355 ! has primary input acetylcholine +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005622 ! has target end location intracellular anatomical structure +relationship: RO:0004009 CHEBI:15355 ! has primary input acetylcholine [Term] id: GO:0051631 @@ -92689,8 +92145,8 @@ def: "Any process that modulates the frequency, rate or extent of the directed m synonym: "regulation of acetylcholine import" EXACT [GOC:dph, GOC:tb] is_a: GO:0051952 ! regulation of amine transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051630 ! acetylcholine uptake -relationship: regulates GO:0051630 ! acetylcholine uptake +intersection_of: RO:0002211 GO:0051630 ! regulates (processual) acetylcholine uptake +relationship: RO:0002211 GO:0051630 ! regulates (processual) acetylcholine uptake [Term] id: GO:0051632 @@ -92704,8 +92160,8 @@ synonym: "negative regulation of acetylcholine import" EXACT [GOC:dph, GOC:tb] is_a: GO:0051631 ! regulation of acetylcholine uptake is_a: GO:0051953 ! negative regulation of amine transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051630 ! acetylcholine uptake -relationship: negatively_regulates GO:0051630 ! acetylcholine uptake +intersection_of: RO:0002212 GO:0051630 ! negatively regulates acetylcholine uptake +relationship: RO:0002212 GO:0051630 ! negatively regulates acetylcholine uptake [Term] id: GO:0051633 @@ -92721,8 +92177,8 @@ synonym: "upregulation of acetylcholine uptake" EXACT [] is_a: GO:0051631 ! regulation of acetylcholine uptake is_a: GO:0051954 ! positive regulation of amine transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051630 ! acetylcholine uptake -relationship: positively_regulates GO:0051630 ! acetylcholine uptake +intersection_of: RO:0002213 GO:0051630 ! positively regulates acetylcholine uptake +relationship: RO:0002213 GO:0051630 ! positively regulates acetylcholine uptake [Term] id: GO:0051640 @@ -92734,10 +92190,10 @@ synonym: "establishment and maintenance of organelle localization" EXACT [] synonym: "organelle localisation" EXACT [GOC:mah] is_a: GO:0051179 ! localization intersection_of: GO:0051179 ! localization -intersection_of: has_primary_input GO:0043226 ! organelle -relationship: has_primary_input GO:0043226 ! organelle +intersection_of: RO:0004009 GO:0043226 ! has primary input organelle relationship: in_taxon NCBITaxon:2759 {all_only="true"} ! Eukaryota -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota +relationship: RO:0004009 GO:0043226 ! has primary input organelle property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19809" xsd:anyURI [Term] @@ -92773,8 +92229,8 @@ synonym: "Golgi body localization" EXACT [] synonym: "Golgi localisation" EXACT [GOC:mah] is_a: GO:0051640 ! organelle localization intersection_of: GO:0051179 ! localization -intersection_of: has_primary_input GO:0005794 ! Golgi apparatus -relationship: has_primary_input GO:0005794 ! Golgi apparatus +intersection_of: RO:0004009 GO:0005794 ! has primary input Golgi apparatus +relationship: RO:0004009 GO:0005794 ! has primary input Golgi apparatus [Term] id: GO:0051647 @@ -92787,8 +92243,8 @@ synonym: "localization of nucleus" EXACT [] synonym: "nucleus localisation" EXACT [GOC:mah] is_a: GO:0051640 ! organelle localization intersection_of: GO:0051179 ! localization -intersection_of: has_primary_input GO:0005634 ! nucleus -relationship: has_primary_input GO:0005634 ! nucleus +intersection_of: RO:0004009 GO:0005634 ! has primary input nucleus +relationship: RO:0004009 GO:0005634 ! has primary input nucleus [Term] id: GO:0051648 @@ -92800,8 +92256,8 @@ synonym: "establishment and maintenance of vesicle localization" EXACT [] synonym: "vesicle localisation" EXACT [GOC:mah] is_a: GO:0051640 ! organelle localization intersection_of: GO:0051179 ! localization -intersection_of: has_primary_input GO:0031982 ! vesicle -relationship: has_primary_input GO:0031982 ! vesicle +intersection_of: RO:0004009 GO:0031982 ! has primary input vesicle +relationship: RO:0004009 GO:0031982 ! has primary input vesicle [Term] id: GO:0051649 @@ -92815,11 +92271,11 @@ synonym: "establishment of localization within cell" NARROW [] synonym: "positioning within cell" NARROW [] is_a: GO:0051234 ! establishment of localization intersection_of: GO:0051234 ! establishment of localization -intersection_of: occurs_in CL:0000000 ! cell +intersection_of: BFO:0000066 CL:0000000 ! occurs in cell +relationship: BFO:0000066 CL:0000000 ! occurs in cell relationship: in_taxon NCBITaxon:131567 {all_only="true"} ! cellular organisms -relationship: occurs_in CL:0000000 ! cell -relationship: only_in_taxon NCBITaxon:131567 ! cellular organisms relationship: part_of GO:0051641 ! cellular localization +relationship: RO:0002160 NCBITaxon:131567 ! only in taxon cellular organisms [Term] id: GO:0051650 @@ -92831,8 +92287,8 @@ is_a: GO:0051648 ! vesicle localization is_a: GO:0051649 ! establishment of localization in cell is_a: GO:0051656 ! establishment of organelle localization intersection_of: GO:0051234 ! establishment of localization -intersection_of: has_primary_input GO:0031982 ! vesicle -relationship: has_primary_input GO:0031982 ! vesicle +intersection_of: RO:0004009 GO:0031982 ! has primary input vesicle +relationship: RO:0004009 GO:0031982 ! has primary input vesicle [Term] id: GO:0051651 @@ -92855,8 +92311,8 @@ synonym: "storage within cell" NARROW [] is_a: GO:0009987 ! cellular process is_a: GO:0051235 ! maintenance of location intersection_of: GO:0051235 ! maintenance of location -intersection_of: occurs_in CL:0000000 ! cell -relationship: occurs_in CL:0000000 ! cell +intersection_of: BFO:0000066 CL:0000000 ! occurs in cell +relationship: BFO:0000066 CL:0000000 ! occurs in cell relationship: part_of GO:0051641 ! cellular localization [Term] @@ -92868,8 +92324,8 @@ synonym: "maintenance of chromosome localization" RELATED [GOC:dph, GOC:tb] is_a: GO:0050000 ! chromosome localization is_a: GO:0051657 ! maintenance of organelle location intersection_of: GO:0051651 ! maintenance of location in cell -intersection_of: has_primary_input GO:0005694 ! chromosome -relationship: has_primary_input GO:0005694 ! chromosome +intersection_of: RO:0004009 GO:0005694 ! has primary input chromosome +relationship: RO:0004009 GO:0005694 ! has primary input chromosome [Term] id: GO:0051655 @@ -92880,8 +92336,8 @@ synonym: "maintenance of vesicle localization" RELATED [GOC:dph, GOC:tb] is_a: GO:0051648 ! vesicle localization is_a: GO:0051657 ! maintenance of organelle location intersection_of: GO:0051651 ! maintenance of location in cell -intersection_of: has_primary_input GO:0031982 ! vesicle -relationship: has_primary_input GO:0031982 ! vesicle +intersection_of: RO:0004009 GO:0031982 ! has primary input vesicle +relationship: RO:0004009 GO:0031982 ! has primary input vesicle [Term] id: GO:0051656 @@ -92892,8 +92348,8 @@ synonym: "establishment of organelle localisation" EXACT [GOC:mah] is_a: GO:0051234 ! establishment of localization is_a: GO:0051640 ! organelle localization intersection_of: GO:0051234 ! establishment of localization -intersection_of: has_primary_input GO:0043226 ! organelle -relationship: has_primary_input GO:0043226 ! organelle +intersection_of: RO:0004009 GO:0043226 ! has primary input organelle +relationship: RO:0004009 GO:0043226 ! has primary input organelle [Term] id: GO:0051657 @@ -92914,8 +92370,8 @@ synonym: "maintenance of nucleus localization" RELATED [GOC:dph, GOC:tb] is_a: GO:0051647 ! nucleus localization is_a: GO:0051657 ! maintenance of organelle location intersection_of: GO:0051651 ! maintenance of location in cell -intersection_of: has_primary_input GO:0005634 ! nucleus -relationship: has_primary_input GO:0005634 ! nucleus +intersection_of: RO:0004009 GO:0005634 ! has primary input nucleus +relationship: RO:0004009 GO:0005634 ! has primary input nucleus [Term] id: GO:0051668 @@ -92929,8 +92385,8 @@ synonym: "localization to membrane" EXACT [] synonym: "positioning within membrane" NARROW [] is_a: GO:0051641 ! cellular localization intersection_of: GO:0051179 ! localization -intersection_of: has_target_end_location GO:0016020 ! membrane -relationship: has_target_end_location GO:0016020 ! membrane +intersection_of: RO:0002339 GO:0016020 ! has target end location membrane +relationship: RO:0002339 GO:0016020 ! has target end location membrane [Term] id: GO:0051674 @@ -92944,8 +92400,8 @@ synonym: "localisation of cell" EXACT [GOC:mah] is_a: GO:0009987 ! cellular process is_a: GO:0051179 ! localization intersection_of: GO:0051179 ! localization -intersection_of: has_primary_input CL:0000000 ! cell -relationship: has_primary_input CL:0000000 ! cell +intersection_of: RO:0004009 CL:0000000 ! has primary input cell +relationship: RO:0004009 CL:0000000 ! has primary input cell [Term] id: GO:0051683 @@ -92959,8 +92415,8 @@ is_a: GO:0051645 ! Golgi localization is_a: GO:0051649 ! establishment of localization in cell is_a: GO:0051656 ! establishment of organelle localization intersection_of: GO:0051234 ! establishment of localization -intersection_of: has_primary_input GO:0005794 ! Golgi apparatus -relationship: has_primary_input GO:0005794 ! Golgi apparatus +intersection_of: RO:0004009 GO:0005794 ! has primary input Golgi apparatus +relationship: RO:0004009 GO:0005794 ! has primary input Golgi apparatus [Term] id: GO:0051684 @@ -92973,8 +92429,8 @@ synonym: "maintenance of Golgi localization" RELATED [GOC:dph, GOC:tb] is_a: GO:0051645 ! Golgi localization is_a: GO:0051657 ! maintenance of organelle location intersection_of: GO:0051651 ! maintenance of location in cell -intersection_of: has_primary_input GO:0005794 ! Golgi apparatus -relationship: has_primary_input GO:0005794 ! Golgi apparatus +intersection_of: RO:0004009 GO:0005794 ! has primary input Golgi apparatus +relationship: RO:0004009 GO:0005794 ! has primary input Golgi apparatus [Term] id: GO:0051707 @@ -92986,8 +92442,8 @@ def: "Any process that results in a change in state or activity of a cell or an is_a: GO:0043207 ! response to external biotic stimulus is_a: GO:0044419 ! biological process involved in interspecies interaction between organisms intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input NCBITaxon_Union:0000030 -relationship: has_primary_input NCBITaxon_Union:0000030 +intersection_of: RO:0004009 NCBITaxon_Union:0000030 ! has primary input +relationship: RO:0004009 NCBITaxon_Union:0000030 ! has primary input [Term] id: GO:0051716 @@ -93027,8 +92483,8 @@ synonym: "regulation of progression through cell cycle" EXACT [] synonym: "tumor suppressor" RELATED [] is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007049 ! cell cycle -relationship: regulates GO:0007049 ! cell cycle +intersection_of: RO:0002211 GO:0007049 ! regulates (processual) cell cycle +relationship: RO:0002211 GO:0007049 ! regulates (processual) cell cycle [Term] id: GO:0051738 @@ -93038,8 +92494,8 @@ def: "Binding to xanthophylls, any of several neutral yellow to orange carotenoi is_a: GO:0019840 ! isoprenoid binding is_a: GO:0031409 ! pigment binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:27325 ! xanthophyll -relationship: has_primary_input CHEBI:27325 ! xanthophyll +intersection_of: RO:0004009 CHEBI:27325 ! has primary input xanthophyll +relationship: RO:0004009 CHEBI:27325 ! has primary input xanthophyll [Term] id: GO:0051761 @@ -93049,8 +92505,8 @@ def: "The chemical reactions and pathways involving sesquiterpenes, any of a cla synonym: "sesquiterpene metabolism" EXACT [] is_a: GO:0042214 ! terpene metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:35189 ! sesquiterpene -relationship: has_primary_input_or_output CHEBI:35189 ! sesquiterpene +intersection_of: RO:0004007 CHEBI:35189 ! has primary input or output sesquiterpene +relationship: RO:0004007 CHEBI:35189 ! has primary input or output sesquiterpene [Term] id: GO:0051762 @@ -93060,8 +92516,8 @@ def: "The chemical reactions and pathways resulting in the formation of sesquite is_a: GO:0046246 ! terpene biosynthetic process is_a: GO:0051761 ! sesquiterpene metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:35189 ! sesquiterpene -relationship: has_primary_output CHEBI:35189 ! sesquiterpene +intersection_of: RO:0004008 CHEBI:35189 ! has primary output sesquiterpene +relationship: RO:0004008 CHEBI:35189 ! has primary output sesquiterpene [Term] id: GO:0051763 @@ -93071,8 +92527,8 @@ def: "The chemical reactions and pathways resulting in the breakdown of sesquite is_a: GO:0046247 ! terpene catabolic process is_a: GO:0051761 ! sesquiterpene metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:35189 ! sesquiterpene -relationship: has_primary_input CHEBI:35189 ! sesquiterpene +intersection_of: RO:0004009 CHEBI:35189 ! has primary input sesquiterpene +relationship: RO:0004009 CHEBI:35189 ! has primary input sesquiterpene [Term] id: GO:0051781 @@ -93087,8 +92543,8 @@ synonym: "upregulation of cell division" EXACT [] is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0051302 ! regulation of cell division intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051301 ! cell division -relationship: positively_regulates GO:0051301 ! cell division +intersection_of: RO:0002213 GO:0051301 ! positively regulates cell division +relationship: RO:0002213 GO:0051301 ! positively regulates cell division [Term] id: GO:0051782 @@ -93102,8 +92558,8 @@ synonym: "inhibition of cell division" NARROW [] is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:0051302 ! regulation of cell division intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051301 ! cell division -relationship: negatively_regulates GO:0051301 ! cell division +intersection_of: RO:0002212 GO:0051301 ! negatively regulates cell division +relationship: RO:0002212 GO:0051301 ! negatively regulates cell division [Term] id: GO:0051783 @@ -93112,8 +92568,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of nuclear division, the partitioning of the nucleus and its genetic information." [GOC:ai] is_a: GO:0033043 ! regulation of organelle organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0000280 ! nuclear division -relationship: regulates GO:0000280 ! nuclear division +intersection_of: RO:0002211 GO:0000280 ! regulates (processual) nuclear division +relationship: RO:0002211 GO:0000280 ! regulates (processual) nuclear division [Term] id: GO:0051784 @@ -93127,8 +92583,8 @@ synonym: "inhibition of nuclear division" NARROW [] is_a: GO:0010639 ! negative regulation of organelle organization is_a: GO:0051783 ! regulation of nuclear division intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0000280 ! nuclear division -relationship: negatively_regulates GO:0000280 ! nuclear division +intersection_of: RO:0002212 GO:0000280 ! negatively regulates nuclear division +relationship: RO:0002212 GO:0000280 ! negatively regulates nuclear division [Term] id: GO:0051785 @@ -93143,8 +92599,8 @@ synonym: "upregulation of nuclear division" EXACT [] is_a: GO:0010638 ! positive regulation of organelle organization is_a: GO:0051783 ! regulation of nuclear division intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0000280 ! nuclear division -relationship: positively_regulates GO:0000280 ! nuclear division +intersection_of: RO:0002213 GO:0000280 ! positively regulates nuclear division +relationship: RO:0002213 GO:0000280 ! positively regulates nuclear division [Term] id: GO:0051790 @@ -93161,8 +92617,8 @@ synonym: "short-chain fatty acid synthesis" EXACT [] is_a: GO:0006633 ! fatty acid biosynthetic process is_a: GO:0046459 ! short-chain fatty acid metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:58951 ! short-chain fatty acid anion -relationship: has_primary_output CHEBI:58951 ! short-chain fatty acid anion +intersection_of: RO:0004008 CHEBI:58951 ! has primary output short-chain fatty acid anion +relationship: RO:0004008 CHEBI:58951 ! has primary output short-chain fatty acid anion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26445" xsd:anyURI [Term] @@ -93173,10 +92629,10 @@ def: "Any process that modulates the frequency, rate or extent of hair follicle is_a: GO:0042634 ! regulation of hair cycle is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001942 ! hair follicle development -relationship: regulates GO:0001942 ! hair follicle development -relationship: regulates GO:0007275 ! multicellular organism development -relationship: regulates GO:0042633 ! hair cycle +intersection_of: RO:0002211 GO:0001942 ! regulates (processual) hair follicle development +relationship: RO:0002211 GO:0001942 ! regulates (processual) hair follicle development +relationship: RO:0002211 GO:0007275 ! regulates (processual) multicellular organism development +relationship: RO:0002211 GO:0042633 ! regulates (processual) hair cycle [Term] id: GO:0051798 @@ -93192,8 +92648,8 @@ is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:0051797 ! regulation of hair follicle development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001942 ! hair follicle development -relationship: positively_regulates GO:0001942 ! hair follicle development +intersection_of: RO:0002213 GO:0001942 ! positively regulates hair follicle development +relationship: RO:0002213 GO:0001942 ! positively regulates hair follicle development [Term] id: GO:0051799 @@ -93208,8 +92664,8 @@ is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:0051797 ! regulation of hair follicle development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001942 ! hair follicle development -relationship: negatively_regulates GO:0001942 ! hair follicle development +intersection_of: RO:0002212 GO:0001942 ! negatively regulates hair follicle development +relationship: RO:0002212 GO:0001942 ! negatively regulates hair follicle development [Term] id: GO:0051861 @@ -93219,8 +92675,8 @@ def: "Binding to a glycolipid, any compound containing one or more monosaccharid is_a: GO:0008289 ! lipid binding is_a: GO:0097367 ! carbohydrate derivative binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:33563 ! glycolipid -relationship: has_primary_input CHEBI:33563 ! glycolipid +intersection_of: RO:0004009 CHEBI:33563 ! has primary input glycolipid +relationship: RO:0004009 CHEBI:33563 ! has primary input glycolipid [Term] id: GO:0051875 @@ -93230,9 +92686,9 @@ def: "Any process in which a pigment granule is transported to, and/or maintaine synonym: "pigment granule localisation" EXACT [GOC:mah] is_a: GO:0051648 ! vesicle localization intersection_of: GO:0051179 ! localization -intersection_of: has_primary_input GO:0048770 ! pigment granule -relationship: has_primary_input GO:0048770 ! pigment granule +intersection_of: RO:0004009 GO:0048770 ! has primary input pigment granule relationship: part_of GO:0033059 ! cellular pigmentation +relationship: RO:0004009 GO:0048770 ! has primary input pigment granule [Term] id: GO:0051890 @@ -93242,8 +92698,8 @@ def: "Any process that modulates the frequency, rate or extent of cardioblast di is_a: GO:1905207 ! regulation of cardiocyte differentiation is_a: GO:2000736 ! regulation of stem cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0010002 ! cardioblast differentiation -relationship: regulates GO:0010002 ! cardioblast differentiation +intersection_of: RO:0002211 GO:0010002 ! regulates (processual) cardioblast differentiation +relationship: RO:0002211 GO:0010002 ! regulates (processual) cardioblast differentiation [Term] id: GO:0051891 @@ -93259,8 +92715,8 @@ is_a: GO:0051890 ! regulation of cardioblast differentiation is_a: GO:1905209 ! positive regulation of cardiocyte differentiation is_a: GO:2000738 ! positive regulation of stem cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0010002 ! cardioblast differentiation -relationship: positively_regulates GO:0010002 ! cardioblast differentiation +intersection_of: RO:0002213 GO:0010002 ! positively regulates cardioblast differentiation +relationship: RO:0002213 GO:0010002 ! positively regulates cardioblast differentiation [Term] id: GO:0051892 @@ -93275,8 +92731,8 @@ is_a: GO:0051890 ! regulation of cardioblast differentiation is_a: GO:1905208 ! negative regulation of cardiocyte differentiation is_a: GO:2000737 ! negative regulation of stem cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0010002 ! cardioblast differentiation -relationship: negatively_regulates GO:0010002 ! cardioblast differentiation +intersection_of: RO:0002212 GO:0010002 ! negatively regulates cardioblast differentiation +relationship: RO:0002212 GO:0010002 ! negatively regulates cardioblast differentiation [Term] id: GO:0051904 @@ -93288,8 +92744,8 @@ is_a: GO:0006810 ! transport is_a: GO:0051875 ! pigment granule localization is_a: GO:0051905 ! establishment of pigment granule localization intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input GO:0048770 ! pigment granule -relationship: has_primary_input GO:0048770 ! pigment granule +intersection_of: RO:0004009 GO:0048770 ! has primary input pigment granule +relationship: RO:0004009 GO:0048770 ! has primary input pigment granule [Term] id: GO:0051905 @@ -93308,8 +92764,8 @@ def: "Any process that modulates the frequency, rate or extent of the directed m synonym: "regulation of calcium transport" EXACT [] is_a: GO:0010959 ! regulation of metal ion transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006816 ! calcium ion transport -relationship: regulates GO:0006816 ! calcium ion transport +intersection_of: RO:0002211 GO:0006816 ! regulates (processual) calcium ion transport +relationship: RO:0002211 GO:0006816 ! regulates (processual) calcium ion transport [Term] id: GO:0051926 @@ -93324,8 +92780,8 @@ synonym: "negative regulation of calcium transport" EXACT [] is_a: GO:0043271 ! negative regulation of monoatomic ion transport is_a: GO:0051924 ! regulation of calcium ion transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006816 ! calcium ion transport -relationship: negatively_regulates GO:0006816 ! calcium ion transport +intersection_of: RO:0002212 GO:0006816 ! negatively regulates calcium ion transport +relationship: RO:0002212 GO:0006816 ! negatively regulates calcium ion transport [Term] id: GO:0051928 @@ -93341,8 +92797,8 @@ synonym: "upregulation of calcium ion transport" EXACT [] is_a: GO:0043270 ! positive regulation of monoatomic ion transport is_a: GO:0051924 ! regulation of calcium ion transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006816 ! calcium ion transport -relationship: positively_regulates GO:0006816 ! calcium ion transport +intersection_of: RO:0002213 GO:0006816 ! positively regulates calcium ion transport +relationship: RO:0002213 GO:0006816 ! positively regulates calcium ion transport [Term] id: GO:0051930 @@ -93351,8 +92807,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal." [GOC:ai] is_a: GO:0051931 ! regulation of sensory perception intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0019233 ! sensory perception of pain -relationship: regulates GO:0019233 ! sensory perception of pain +intersection_of: RO:0002211 GO:0019233 ! regulates (processual) sensory perception of pain +relationship: RO:0002211 GO:0019233 ! regulates (processual) sensory perception of pain [Term] id: GO:0051931 @@ -93361,8 +92817,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of sensory perception, the series of events required for an organism to receive a sensory stimulus, convert it to a molecular signal, and recognize and characterize the signal." [GOC:ai] is_a: GO:0031644 ! regulation of nervous system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007600 ! sensory perception -relationship: regulates GO:0007600 ! sensory perception +intersection_of: RO:0002211 GO:0007600 ! regulates (processual) sensory perception +relationship: RO:0002211 GO:0007600 ! regulates (processual) sensory perception [Term] id: GO:0051932 @@ -93374,8 +92830,8 @@ synonym: "synaptic transmission, GABA mediated" EXACT [] synonym: "synaptic transmission, gamma-aminobutyric acid mediated" EXACT [] synonym: "synaptic transmission, gamma-aminobutyric acid-ergic" EXACT [] is_a: GO:0007268 ! chemical synaptic transmission -relationship: has_participant CHEBI:59888 ! gamma-aminobutyric acid zwitterion -relationship: has_participant CL:0000617 ! GABAergic neuron +relationship: RO:0000057 CHEBI:59888 ! has participant gamma-aminobutyric acid zwitterion +relationship: RO:0000057 CL:0000617 ! has participant GABAergic neuron [Term] id: GO:0051937 @@ -93385,8 +92841,8 @@ def: "The directed movement of catecholamines, a group of physiologically import is_a: GO:0015844 ! monoamine transport is_a: GO:0015850 ! organic hydroxy compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:33567 ! catecholamine -relationship: has_primary_input CHEBI:33567 ! catecholamine +intersection_of: RO:0004009 CHEBI:33567 ! has primary input catecholamine +relationship: RO:0004009 CHEBI:33567 ! has primary input catecholamine [Term] id: GO:0051938 @@ -93398,8 +92854,8 @@ is_a: GO:0015800 ! acidic amino acid transport is_a: GO:0046942 ! carboxylic acid transport is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29985 ! L-glutamate(1-) -relationship: has_primary_input CHEBI:29985 ! L-glutamate(1-) +intersection_of: RO:0004009 CHEBI:29985 ! has primary input L-glutamate(1-) +relationship: RO:0004009 CHEBI:29985 ! has primary input L-glutamate(1-) [Term] id: GO:0051939 @@ -93413,8 +92869,8 @@ synonym: "gamma-aminobutyric acid uptake" EXACT [GOC:dph, GOC:tb] is_a: GO:0015800 ! acidic amino acid transport is_a: GO:0015812 ! gamma-aminobutyric acid transport intersection_of: GO:0015800 ! acidic amino acid transport -intersection_of: has_primary_input CHEBI:59888 ! gamma-aminobutyric acid zwitterion -relationship: has_primary_input CHEBI:59888 ! gamma-aminobutyric acid zwitterion +intersection_of: RO:0004009 CHEBI:59888 ! has primary input gamma-aminobutyric acid zwitterion +relationship: RO:0004009 CHEBI:59888 ! has primary input gamma-aminobutyric acid zwitterion [Term] id: GO:0051952 @@ -93423,8 +92879,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the directed movement of amines into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0015837 ! amine transport -relationship: regulates GO:0015837 ! amine transport +intersection_of: RO:0002211 GO:0015837 ! regulates (processual) amine transport +relationship: RO:0002211 GO:0015837 ! regulates (processual) amine transport [Term] id: GO:0051953 @@ -93438,8 +92894,8 @@ synonym: "inhibition of amine transport" NARROW [] is_a: GO:0051051 ! negative regulation of transport is_a: GO:0051952 ! regulation of amine transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0015837 ! amine transport -relationship: negatively_regulates GO:0015837 ! amine transport +intersection_of: RO:0002212 GO:0015837 ! negatively regulates amine transport +relationship: RO:0002212 GO:0015837 ! negatively regulates amine transport [Term] id: GO:0051954 @@ -93454,8 +92910,8 @@ synonym: "upregulation of amine transport" EXACT [] is_a: GO:0051050 ! positive regulation of transport is_a: GO:0051952 ! regulation of amine transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0015837 ! amine transport -relationship: positively_regulates GO:0015837 ! amine transport +intersection_of: RO:0002213 GO:0015837 ! positively regulates amine transport +relationship: RO:0002213 GO:0015837 ! positively regulates amine transport [Term] id: GO:0051955 @@ -93464,8 +92920,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the directed movement of amino acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] is_a: GO:0051952 ! regulation of amine transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006865 ! amino acid transport -relationship: regulates GO:0006865 ! amino acid transport +intersection_of: RO:0002211 GO:0006865 ! regulates (processual) amino acid transport +relationship: RO:0002211 GO:0006865 ! regulates (processual) amino acid transport [Term] id: GO:0051956 @@ -93480,8 +92936,8 @@ synonym: "negative regulation of amino acid transmembrane transport" EXACT [GOC: is_a: GO:0051953 ! negative regulation of amine transport is_a: GO:0051955 ! regulation of amino acid transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006865 ! amino acid transport -relationship: negatively_regulates GO:0006865 ! amino acid transport +intersection_of: RO:0002212 GO:0006865 ! negatively regulates amino acid transport +relationship: RO:0002212 GO:0006865 ! negatively regulates amino acid transport [Term] id: GO:0051957 @@ -93497,8 +92953,8 @@ synonym: "upregulation of amino acid transport" EXACT [] is_a: GO:0051954 ! positive regulation of amine transport is_a: GO:0051955 ! regulation of amino acid transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006865 ! amino acid transport -relationship: positively_regulates GO:0006865 ! amino acid transport +intersection_of: RO:0002213 GO:0006865 ! positively regulates amino acid transport +relationship: RO:0002213 GO:0006865 ! positively regulates amino acid transport [Term] id: GO:0051960 @@ -93507,10 +92963,10 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of nervous system development, the origin and formation of nervous tissue." [GOC:ai] is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007399 ! nervous system development +intersection_of: RO:0002211 GO:0007399 ! regulates (processual) nervous system development relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa -relationship: regulates GO:0007399 ! nervous system development +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa +relationship: RO:0002211 GO:0007399 ! regulates (processual) nervous system development [Term] id: GO:0051961 @@ -93525,8 +92981,8 @@ is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:0051960 ! regulation of nervous system development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007399 ! nervous system development -relationship: negatively_regulates GO:0007399 ! nervous system development +intersection_of: RO:0002212 GO:0007399 ! negatively regulates nervous system development +relationship: RO:0002212 GO:0007399 ! negatively regulates nervous system development [Term] id: GO:0051962 @@ -93542,8 +92998,8 @@ is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:0051960 ! regulation of nervous system development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007399 ! nervous system development -relationship: positively_regulates GO:0007399 ! nervous system development +intersection_of: RO:0002213 GO:0007399 ! positively regulates nervous system development +relationship: RO:0002213 GO:0007399 ! positively regulates nervous system development [Term] id: GO:0051963 @@ -93556,8 +93012,8 @@ synonym: "regulation of synaptogenesis" EXACT [] is_a: GO:0050807 ! regulation of synapse organization is_a: GO:1901888 ! regulation of cell junction assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007416 ! synapse assembly -relationship: regulates GO:0007416 ! synapse assembly +intersection_of: RO:0002211 GO:0007416 ! regulates (processual) synapse assembly +relationship: RO:0002211 GO:0007416 ! regulates (processual) synapse assembly [Term] id: GO:0051964 @@ -93575,8 +93031,8 @@ is_a: GO:0051963 ! regulation of synapse assembly is_a: GO:1901889 ! negative regulation of cell junction assembly is_a: GO:1905809 ! negative regulation of synapse organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007416 ! synapse assembly -relationship: negatively_regulates GO:0007416 ! synapse assembly +intersection_of: RO:0002212 GO:0007416 ! negatively regulates synapse assembly +relationship: RO:0002212 GO:0007416 ! negatively regulates synapse assembly [Term] id: GO:0051965 @@ -93594,8 +93050,8 @@ is_a: GO:0051962 ! positive regulation of nervous system development is_a: GO:0051963 ! regulation of synapse assembly is_a: GO:1901890 ! positive regulation of cell junction assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007416 ! synapse assembly -relationship: positively_regulates GO:0007416 ! synapse assembly +intersection_of: RO:0002213 GO:0007416 ! positively regulates synapse assembly +relationship: RO:0002213 GO:0007416 ! positively regulates synapse assembly [Term] id: GO:0051966 @@ -93604,8 +93060,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate." [GOC:ai] is_a: GO:0050804 ! modulation of chemical synaptic transmission intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035249 ! synaptic transmission, glutamatergic -relationship: regulates GO:0035249 ! synaptic transmission, glutamatergic +intersection_of: RO:0002211 GO:0035249 ! regulates (processual) synaptic transmission, glutamatergic +relationship: RO:0002211 GO:0035249 ! regulates (processual) synaptic transmission, glutamatergic [Term] id: GO:0051967 @@ -93619,8 +93075,8 @@ synonym: "inhibition of synaptic transmission, glutamatergic" NARROW [] is_a: GO:0050805 ! negative regulation of synaptic transmission is_a: GO:0051966 ! regulation of synaptic transmission, glutamatergic intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035249 ! synaptic transmission, glutamatergic -relationship: negatively_regulates GO:0035249 ! synaptic transmission, glutamatergic +intersection_of: RO:0002212 GO:0035249 ! negatively regulates synaptic transmission, glutamatergic +relationship: RO:0002212 GO:0035249 ! negatively regulates synaptic transmission, glutamatergic [Term] id: GO:0051968 @@ -93635,8 +93091,8 @@ synonym: "upregulation of synaptic transmission, glutamatergic" EXACT [] is_a: GO:0050806 ! positive regulation of synaptic transmission is_a: GO:0051966 ! regulation of synaptic transmission, glutamatergic intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035249 ! synaptic transmission, glutamatergic -relationship: positively_regulates GO:0035249 ! synaptic transmission, glutamatergic +intersection_of: RO:0002213 GO:0035249 ! positively regulates synaptic transmission, glutamatergic +relationship: RO:0002213 GO:0035249 ! positively regulates synaptic transmission, glutamatergic [Term] id: GO:0051969 @@ -93647,9 +93103,9 @@ synonym: "regulation of conduction of nerve impulse" EXACT [GOC:dph] is_a: GO:0010646 ! regulation of cell communication is_a: GO:0031644 ! regulation of nervous system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0019226 ! transmission of nerve impulse -relationship: regulates GO:0007154 ! cell communication -relationship: regulates GO:0019226 ! transmission of nerve impulse +intersection_of: RO:0002211 GO:0019226 ! regulates (processual) transmission of nerve impulse +relationship: RO:0002211 GO:0007154 ! regulates (processual) cell communication +relationship: RO:0002211 GO:0019226 ! regulates (processual) transmission of nerve impulse [Term] id: GO:0051970 @@ -93665,8 +93121,8 @@ is_a: GO:0010648 ! negative regulation of cell communication is_a: GO:0031645 ! negative regulation of nervous system process is_a: GO:0051969 ! regulation of transmission of nerve impulse intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0019226 ! transmission of nerve impulse -relationship: negatively_regulates GO:0019226 ! transmission of nerve impulse +intersection_of: RO:0002212 GO:0019226 ! negatively regulates transmission of nerve impulse +relationship: RO:0002212 GO:0019226 ! negatively regulates transmission of nerve impulse [Term] id: GO:0051971 @@ -93683,8 +93139,8 @@ is_a: GO:0010647 ! positive regulation of cell communication is_a: GO:0031646 ! positive regulation of nervous system process is_a: GO:0051969 ! regulation of transmission of nerve impulse intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0019226 ! transmission of nerve impulse -relationship: positively_regulates GO:0019226 ! transmission of nerve impulse +intersection_of: RO:0002213 GO:0019226 ! positively regulates transmission of nerve impulse +relationship: RO:0002213 GO:0019226 ! positively regulates transmission of nerve impulse [Term] id: GO:0051983 @@ -93693,8 +93149,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of chromosome segregation, the process in which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets." [GOC:ai] is_a: GO:0010564 ! regulation of cell cycle process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007059 ! chromosome segregation -relationship: regulates GO:0007059 ! chromosome segregation +intersection_of: RO:0002211 GO:0007059 ! regulates (processual) chromosome segregation +relationship: RO:0002211 GO:0007059 ! regulates (processual) chromosome segregation [Term] id: GO:0051984 @@ -93709,8 +93165,8 @@ synonym: "upregulation of chromosome segregation" EXACT [] is_a: GO:0051983 ! regulation of chromosome segregation is_a: GO:0090068 ! positive regulation of cell cycle process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007059 ! chromosome segregation -relationship: positively_regulates GO:0007059 ! chromosome segregation +intersection_of: RO:0002213 GO:0007059 ! positively regulates chromosome segregation +relationship: RO:0002213 GO:0007059 ! positively regulates chromosome segregation [Term] id: GO:0051985 @@ -93724,8 +93180,8 @@ synonym: "inhibition of chromosome segregation" NARROW [] is_a: GO:0010948 ! negative regulation of cell cycle process is_a: GO:0051983 ! regulation of chromosome segregation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007059 ! chromosome segregation -relationship: negatively_regulates GO:0007059 ! chromosome segregation +intersection_of: RO:0002212 GO:0007059 ! negatively regulates chromosome segregation +relationship: RO:0002212 GO:0007059 ! negatively regulates chromosome segregation [Term] id: GO:0052803 @@ -93733,10 +93189,10 @@ name: imidazole-containing compound metabolic process namespace: biological_process def: "The chemical reactions and pathways involving imidazoles, five-membered organic heterocycle containing two nitrogen atoms at positions 1 and 3, or any of its derivatives; compounds containing an imidazole skeleton." [GOC:curators] synonym: "imidazole metabolism" EXACT [] -is_a: GO:1901564 ! organonitrogen compound metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:24780 ! imidazoles -relationship: has_primary_input_or_output CHEBI:24780 ! imidazoles +intersection_of: RO:0004007 CHEBI:24780 ! has primary input or output imidazoles +relationship: RO:0004007 CHEBI:24780 ! has primary input or output imidazoles [Term] id: GO:0052805 @@ -93746,11 +93202,11 @@ def: "The chemical reactions and pathways resulting in the breakdown of imidazol synonym: "imidazole breakdown" EXACT [] synonym: "imidazole catabolism" EXACT [] synonym: "imidazole degradation" EXACT [] +is_a: GO:0009056 ! catabolic process is_a: GO:0052803 ! imidazole-containing compound metabolic process -is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:24780 ! imidazoles -relationship: has_primary_input CHEBI:24780 ! imidazoles +intersection_of: RO:0004009 CHEBI:24780 ! has primary input imidazoles +relationship: RO:0004009 CHEBI:24780 ! has primary input imidazoles [Term] id: GO:0055001 @@ -93764,9 +93220,9 @@ synonym: "myofiber development" EXACT [] synonym: "myofibre development" EXACT [] is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000187 ! muscle cell +intersection_of: RO:0002296 CL:0000187 ! results in development of muscle cell relationship: part_of GO:0042692 ! muscle cell differentiation -relationship: results_in_development_of CL:0000187 ! muscle cell +relationship: RO:0002296 CL:0000187 ! results in development of muscle cell [Term] id: GO:0055002 @@ -93775,9 +93231,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a striated muscle cell over time, from its formation to the mature structure. Striated muscle cells contain fibers that are divided by transverse bands into striations, and cardiac and skeletal muscle are types of striated muscle." [CL:0000737, GOC:devbiol] is_a: GO:0055001 ! muscle cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000737 ! striated muscle cell +intersection_of: RO:0002296 CL:0000737 ! results in development of striated muscle cell relationship: part_of GO:0051146 ! striated muscle cell differentiation -relationship: results_in_development_of CL:0000737 ! striated muscle cell +relationship: RO:0002296 CL:0000737 ! results in development of striated muscle cell [Term] id: GO:0055003 @@ -93789,9 +93245,9 @@ synonym: "cardiac myofibril morphogenesis" EXACT [] synonym: "heart myofibril assembly" RELATED [] is_a: GO:0030239 ! myofibril assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0097512 ! cardiac myofibril +intersection_of: RO:0002588 GO:0097512 ! results in assembly of cardiac myofibril relationship: part_of GO:0055013 ! cardiac muscle cell development -relationship: results_in_assembly_of GO:0097512 ! cardiac myofibril +relationship: RO:0002588 GO:0097512 ! results in assembly of cardiac myofibril [Term] id: GO:0055006 @@ -93802,9 +93258,9 @@ synonym: "cardiocyte development" EXACT [GOC:dph] synonym: "heart cell development" RELATED [] is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0002494 ! cardiocyte +intersection_of: RO:0002296 CL:0002494 ! results in development of cardiocyte relationship: part_of GO:0035051 ! cardiocyte differentiation -relationship: results_in_development_of CL:0002494 ! cardiocyte +relationship: RO:0002296 CL:0002494 ! results in development of cardiocyte [Term] id: GO:0055007 @@ -93816,9 +93272,9 @@ synonym: "heart muscle cell differentiation" RELATED [] is_a: GO:0035051 ! cardiocyte differentiation is_a: GO:0051146 ! striated muscle cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000746 ! cardiac muscle cell +intersection_of: RO:0002315 CL:0000746 ! results in acquisition of features of cardiac muscle cell relationship: part_of GO:0048738 ! cardiac muscle tissue development -relationship: results_in_acquisition_of_features_of CL:0000746 ! cardiac muscle cell +relationship: RO:0002315 CL:0000746 ! results in acquisition of features of cardiac muscle cell [Term] id: GO:0055008 @@ -93829,10 +93285,10 @@ synonym: "heart muscle morphogenesis" EXACT [] synonym: "myocardium morphogenesis" BROAD [GOC:mtg_heart] is_a: GO:0060415 ! muscle tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001133 ! cardiac muscle tissue +intersection_of: RO:0002298 UBERON:0001133 ! results in morphogenesis of cardiac muscle tissue relationship: part_of GO:0003007 ! heart morphogenesis relationship: part_of GO:0048738 ! cardiac muscle tissue development -relationship: results_in_morphogenesis_of UBERON:0001133 ! cardiac muscle tissue +relationship: RO:0002298 UBERON:0001133 ! results in morphogenesis of cardiac muscle tissue [Term] id: GO:0055009 @@ -93844,10 +93300,10 @@ synonym: "atrial myocardium morphogenesis" EXACT [GOC:mtg_heart] synonym: "cardiac atrium muscle morphogenesis" EXACT [] is_a: GO:0055008 ! cardiac muscle tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004490 ! cardiac muscle tissue of atrium +intersection_of: RO:0002298 UBERON:0004490 ! results in morphogenesis of cardiac muscle tissue of atrium relationship: part_of GO:0003209 ! cardiac atrium morphogenesis relationship: part_of GO:0003228 ! atrial cardiac muscle tissue development -relationship: results_in_morphogenesis_of UBERON:0004490 ! cardiac muscle tissue of atrium +relationship: RO:0002298 UBERON:0004490 ! results in morphogenesis of cardiac muscle tissue of atrium [Term] id: GO:0055010 @@ -93858,10 +93314,10 @@ synonym: "cardiac ventricle muscle morphogenesis" EXACT [] synonym: "ventricular heart muscle morphogenesis" EXACT [] is_a: GO:0055008 ! cardiac muscle tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0018649 ! cardiac muscle tissue of ventricle +intersection_of: RO:0002298 UBERON:0018649 ! results in morphogenesis of cardiac muscle tissue of ventricle relationship: part_of GO:0003208 ! cardiac ventricle morphogenesis relationship: part_of GO:0003229 ! ventricular cardiac muscle tissue development -relationship: results_in_morphogenesis_of UBERON:0018649 ! cardiac muscle tissue of ventricle +relationship: RO:0002298 UBERON:0018649 ! results in morphogenesis of cardiac muscle tissue of ventricle [Term] id: GO:0055013 @@ -93877,9 +93333,9 @@ synonym: "heart muscle fiber development" RELATED [] is_a: GO:0055002 ! striated muscle cell development is_a: GO:0055006 ! cardiac cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000746 ! cardiac muscle cell +intersection_of: RO:0002296 CL:0000746 ! results in development of cardiac muscle cell relationship: part_of GO:0055007 ! cardiac muscle cell differentiation -relationship: results_in_development_of CL:0000746 ! cardiac muscle cell +relationship: RO:0002296 CL:0000746 ! results in development of cardiac muscle cell [Term] id: GO:0055016 @@ -93890,8 +93346,8 @@ synonym: "subnotochordal rod development" EXACT [] is_a: GO:0009888 ! tissue development is_a: GO:0048568 ! embryonic organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003058 ! hypochord -relationship: results_in_development_of UBERON:0003058 ! hypochord +intersection_of: RO:0002296 UBERON:0003058 ! results in development of hypochord +relationship: RO:0002296 UBERON:0003058 ! results in development of hypochord [Term] id: GO:0055017 @@ -93901,10 +93357,10 @@ def: "The increase in size or mass of a cardiac muscle, where the increase in si synonym: "heart muscle growth" EXACT [] is_a: GO:0048589 ! developmental growth intersection_of: GO:0048589 ! developmental growth -intersection_of: results_in_growth_of UBERON:0001133 ! cardiac muscle tissue +intersection_of: RO:0002343 UBERON:0001133 ! results in growth of cardiac muscle tissue relationship: part_of GO:0048738 ! cardiac muscle tissue development relationship: part_of GO:0060419 ! heart growth -relationship: results_in_growth_of UBERON:0001133 ! cardiac muscle tissue +relationship: RO:0002343 UBERON:0001133 ! results in growth of cardiac muscle tissue [Term] id: GO:0055018 @@ -93916,9 +93372,9 @@ synonym: "regulation of heart muscle fiber development" EXACT [] is_a: GO:0060284 ! regulation of cell development is_a: GO:2000725 ! regulation of cardiac muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0055013 ! cardiac muscle cell development -relationship: regulates GO:0055007 ! cardiac muscle cell differentiation -relationship: regulates GO:0055013 ! cardiac muscle cell development +intersection_of: RO:0002211 GO:0055013 ! regulates (processual) cardiac muscle cell development +relationship: RO:0002211 GO:0055007 ! regulates (processual) cardiac muscle cell differentiation +relationship: RO:0002211 GO:0055013 ! regulates (processual) cardiac muscle cell development [Term] id: GO:0055019 @@ -93935,8 +93391,8 @@ is_a: GO:0010721 ! negative regulation of cell development is_a: GO:0051154 ! negative regulation of striated muscle cell differentiation is_a: GO:0055018 ! regulation of cardiac muscle fiber development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0055013 ! cardiac muscle cell development -relationship: negatively_regulates GO:0055013 ! cardiac muscle cell development +intersection_of: RO:0002212 GO:0055013 ! negatively regulates cardiac muscle cell development +relationship: RO:0002212 GO:0055013 ! negatively regulates cardiac muscle cell development [Term] id: GO:0055020 @@ -93954,9 +93410,9 @@ is_a: GO:0010720 ! positive regulation of cell development is_a: GO:0055018 ! regulation of cardiac muscle fiber development is_a: GO:2000727 ! positive regulation of cardiac muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0055013 ! cardiac muscle cell development -relationship: positively_regulates GO:0055007 ! cardiac muscle cell differentiation -relationship: positively_regulates GO:0055013 ! cardiac muscle cell development +intersection_of: RO:0002213 GO:0055013 ! positively regulates cardiac muscle cell development +relationship: RO:0002213 GO:0055007 ! positively regulates cardiac muscle cell differentiation +relationship: RO:0002213 GO:0055013 ! positively regulates cardiac muscle cell development [Term] id: GO:0055021 @@ -93965,9 +93421,9 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cardiac muscle growth." [GOC:vk] is_a: GO:0060420 ! regulation of heart growth intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0055017 ! cardiac muscle tissue growth -relationship: regulates GO:0055017 ! cardiac muscle tissue growth -relationship: regulates GO:0060419 ! heart growth +intersection_of: RO:0002211 GO:0055017 ! regulates (processual) cardiac muscle tissue growth +relationship: RO:0002211 GO:0055017 ! regulates (processual) cardiac muscle tissue growth +relationship: RO:0002211 GO:0060419 ! regulates (processual) heart growth [Term] id: GO:0055022 @@ -93982,8 +93438,8 @@ synonym: "negative regulation of heart muscle growth" RELATED [] is_a: GO:0055021 ! regulation of cardiac muscle tissue growth is_a: GO:0061117 ! negative regulation of heart growth intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0055017 ! cardiac muscle tissue growth -relationship: negatively_regulates GO:0055017 ! cardiac muscle tissue growth +intersection_of: RO:0002212 GO:0055017 ! negatively regulates cardiac muscle tissue growth +relationship: RO:0002212 GO:0055017 ! negatively regulates cardiac muscle tissue growth [Term] id: GO:0055023 @@ -93999,8 +93455,8 @@ synonym: "upregulation of cardiac muscle growth" EXACT [] is_a: GO:0055021 ! regulation of cardiac muscle tissue growth is_a: GO:0060421 ! positive regulation of heart growth intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0055017 ! cardiac muscle tissue growth -relationship: positively_regulates GO:0055017 ! cardiac muscle tissue growth +intersection_of: RO:0002213 GO:0055017 ! positively regulates cardiac muscle tissue growth +relationship: RO:0002213 GO:0055017 ! positively regulates cardiac muscle tissue growth [Term] id: GO:0055024 @@ -94010,8 +93466,8 @@ def: "Any process that modulates the frequency, rate or extent of cardiac muscle synonym: "regulation of heart muscle development" EXACT [] is_a: GO:0016202 ! regulation of striated muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048738 ! cardiac muscle tissue development -relationship: regulates GO:0048738 ! cardiac muscle tissue development +intersection_of: RO:0002211 GO:0048738 ! regulates (processual) cardiac muscle tissue development +relationship: RO:0002211 GO:0048738 ! regulates (processual) cardiac muscle tissue development [Term] id: GO:0055025 @@ -94027,8 +93483,8 @@ synonym: "upregulation of cardiac muscle development" EXACT [] is_a: GO:0045844 ! positive regulation of striated muscle tissue development is_a: GO:0055024 ! regulation of cardiac muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048738 ! cardiac muscle tissue development -relationship: positively_regulates GO:0048738 ! cardiac muscle tissue development +intersection_of: RO:0002213 GO:0048738 ! positively regulates cardiac muscle tissue development +relationship: RO:0002213 GO:0048738 ! positively regulates cardiac muscle tissue development [Term] id: GO:0055026 @@ -94043,27 +93499,31 @@ synonym: "negative regulation of heart muscle development" EXACT [] is_a: GO:0045843 ! negative regulation of striated muscle tissue development is_a: GO:0055024 ! regulation of cardiac muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048738 ! cardiac muscle tissue development -relationship: negatively_regulates GO:0048738 ! cardiac muscle tissue development +intersection_of: RO:0002212 GO:0048738 ! negatively regulates cardiac muscle tissue development +relationship: RO:0002212 GO:0048738 ! negatively regulates cardiac muscle tissue development [Term] id: GO:0055056 name: D-glucose transmembrane transporter activity namespace: molecular_function +alt_id: GO:0015579 def: "Enables the transfer of the D-enantiomer of the hexose monosaccharide glucose from one side of a membrane to the other." [GOC:jid, GOC:jsg, GOC:mah] xref: Reactome:R-HSA-429094 "SLC2A6,8,10,12 transport Glc from extracellular region to cytosol" xref: Reactome:R-HSA-450095 "GLUT2 (SLC2A2) transports Glc from cytosol to extracellular region" +xref: Reactome:R-HSA-499981 "Transport of Extracellular Glucose to the Cytosol by GLUT1 and GLUT2" xref: Reactome:R-HSA-5339524 "GLUT1 (SLC2A1) tetramer transports Glc from extracellular region to cytosol" xref: Reactome:R-HSA-5632804 "SLC2A1 tetramer does not transport Glc from extracellular region to cytosol" xref: Reactome:R-HSA-5632871 "Defective SLC2A10 does not transport Glc from extracellular region to cytosol" +xref: Reactome:R-HSA-5653873 "SLC2A1 tetramer transports Glc from cytosol to Golgi lumen" xref: Reactome:R-HSA-8981553 "GLUT14 (SLC2A14) tetramer transports Glc from extracellular region to cytosol" xref: Reactome:R-HSA-8981564 "GLUT3 (SLC2A3) tetramer transports Glc from extracellular region to cytosol" xref: Reactome:R-HSA-8981570 "GLUT4 (SLC2A4) tetramer transports Glc from extracellular region to cytosol" xref: Reactome:R-HSA-8981574 "GLUT2 (SLC2A2) tetramer transports Glc from extracellular region to cytosol" is_a: GO:0015149 ! hexose transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:17634 ! D-glucose -relationship: has_primary_input CHEBI:17634 ! D-glucose +intersection_of: RO:0004009 CHEBI:4167 ! has primary input D-glucopyranose +relationship: RO:0004009 CHEBI:4167 ! has primary input D-glucopyranose +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27326" xsd:anyURI [Term] id: GO:0055057 @@ -94073,9 +93533,9 @@ def: "The process resulting in the physical partitioning and separation of a neu synonym: "neuroblast cell division" EXACT [] is_a: GO:0051301 ! cell division intersection_of: GO:0051301 ! cell division -intersection_of: has_primary_input CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: has_primary_input CL:0000031 ! neuroblast (sensu Vertebrata) +intersection_of: RO:0004009 CL:0000031 ! has primary input neuroblast (sensu Vertebrata) relationship: part_of GO:0007405 ! neuroblast proliferation +relationship: RO:0004009 CL:0000031 ! has primary input neuroblast (sensu Vertebrata) [Term] id: GO:0055059 @@ -94086,8 +93546,8 @@ is_a: GO:0008356 ! asymmetric cell division is_a: GO:0045165 ! cell fate commitment is_a: GO:0055057 ! neuroblast division intersection_of: GO:0008356 ! asymmetric cell division -intersection_of: has_primary_input CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: has_primary_input CL:0000031 ! neuroblast (sensu Vertebrata) +intersection_of: RO:0004009 CL:0000031 ! has primary input neuroblast (sensu Vertebrata) +relationship: RO:0004009 CL:0000031 ! has primary input neuroblast (sensu Vertebrata) [Term] id: GO:0055062 @@ -94098,8 +93558,8 @@ synonym: "phosphate homeostasis" BROAD [] synonym: "Pi homeostasis" EXACT [] is_a: GO:0098771 ! inorganic ion homeostasis intersection_of: GO:0048878 ! chemical homeostasis -intersection_of: regulates_levels_of CHEBI:43474 ! hydrogenphosphate -relationship: regulates_levels_of CHEBI:43474 ! hydrogenphosphate +intersection_of: RO:0002332 CHEBI:43474 ! regulates levels of hydrogenphosphate +relationship: RO:0002332 CHEBI:43474 ! regulates levels of hydrogenphosphate property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26429" xsd:anyURI [Term] @@ -94112,8 +93572,8 @@ synonym: "sulfate homeostasis" EXACT [] synonym: "sulphate ion homeostasis" EXACT [] is_a: GO:0098771 ! inorganic ion homeostasis intersection_of: GO:0048878 ! chemical homeostasis -intersection_of: regulates_levels_of CHEBI:16189 ! sulfate -relationship: regulates_levels_of CHEBI:16189 ! sulfate +intersection_of: RO:0002332 CHEBI:16189 ! regulates levels of sulfate +relationship: RO:0002332 CHEBI:16189 ! regulates levels of sulfate [Term] id: GO:0055074 @@ -94124,8 +93584,19 @@ synonym: "regulation of calcium ion concentration" EXACT [] is_a: GO:0055080 ! monoatomic cation homeostasis is_a: GO:0098771 ! inorganic ion homeostasis intersection_of: GO:0048878 ! chemical homeostasis -intersection_of: regulates_levels_of CHEBI:29108 ! calcium(2+) -relationship: regulates_levels_of CHEBI:29108 ! calcium(2+) +intersection_of: RO:0002332 CHEBI:29108 ! regulates levels of calcium(2+) +relationship: RO:0002332 CHEBI:29108 ! regulates levels of calcium(2+) + +[Term] +id: GO:0055075 +name: potassium ion homeostasis +namespace: biological_process +def: "Any process involved in the maintenance of an internal steady state of potassium ions within an organism or cell." [GOC:jid, GOC:mah] +is_a: GO:0055080 ! monoatomic cation homeostasis +is_a: GO:0098771 ! inorganic ion homeostasis +intersection_of: GO:0048878 ! chemical homeostasis +intersection_of: RO:0002332 CHEBI:29103 ! regulates levels of potassium(1+) +relationship: RO:0002332 CHEBI:29103 ! regulates levels of potassium(1+) [Term] id: GO:0055078 @@ -94135,8 +93606,8 @@ def: "Any process involved in the maintenance of an internal steady state of sod is_a: GO:0055080 ! monoatomic cation homeostasis is_a: GO:0098771 ! inorganic ion homeostasis intersection_of: GO:0048878 ! chemical homeostasis -intersection_of: regulates_levels_of CHEBI:29101 ! sodium(1+) -relationship: regulates_levels_of CHEBI:29101 ! sodium(1+) +intersection_of: RO:0002332 CHEBI:29101 ! regulates levels of sodium(1+) +relationship: RO:0002332 CHEBI:29101 ! regulates levels of sodium(1+) [Term] id: GO:0055080 @@ -94146,8 +93617,8 @@ def: "Any process involved in the maintenance of an internal steady state of mon synonym: "cation homeostasis" BROAD [] is_a: GO:0050801 ! monoatomic ion homeostasis intersection_of: GO:0048878 ! chemical homeostasis -intersection_of: regulates_levels_of CHEBI:23906 ! monoatomic cation -relationship: regulates_levels_of CHEBI:23906 ! monoatomic cation +intersection_of: RO:0002332 CHEBI:23906 ! regulates levels of monoatomic cation +relationship: RO:0002332 CHEBI:23906 ! regulates levels of monoatomic cation property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24455" xsd:anyURI [Term] @@ -94159,8 +93630,8 @@ synonym: "cellular chemical homeostasis" EXACT [] is_a: GO:0019725 ! cellular homeostasis is_a: GO:0048878 ! chemical homeostasis intersection_of: GO:0019725 ! cellular homeostasis -intersection_of: regulates_levels_of CHEBI:24431 ! chemical entity -relationship: regulates_levels_of CHEBI:24431 ! chemical entity +intersection_of: RO:0002332 CHEBI:24431 ! regulates levels of chemical entity +relationship: RO:0002332 CHEBI:24431 ! regulates levels of chemical entity property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24514" xsd:anyURI [Term] @@ -94181,8 +93652,8 @@ synonym: "membrane transport" EXACT [] is_a: GO:0006810 ! transport is_a: GO:0009987 ! cellular process intersection_of: GO:0006810 ! transport -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0002342 GO:0016020 ! results in transport across membrane created_by: tb creation_date: 2015-10-21T13:22:47Z @@ -94208,8 +93679,8 @@ namespace: biological_process def: "Any process involved in the maintenance of an internal steady state of lipid within an organism or cell." [GOC:BHF, GOC:rl] is_a: GO:0048878 ! chemical homeostasis intersection_of: GO:0048878 ! chemical homeostasis -intersection_of: regulates_levels_of CHEBI:18059 ! lipid -relationship: regulates_levels_of CHEBI:18059 ! lipid +intersection_of: RO:0002332 CHEBI:18059 ! regulates levels of lipid +relationship: RO:0002332 CHEBI:18059 ! regulates levels of lipid [Term] id: GO:0055089 @@ -94218,8 +93689,8 @@ namespace: biological_process def: "Any process involved in the maintenance of an internal steady state of fatty acid within an organism or cell." [GOC:BHF, GOC:rl] is_a: GO:0055088 ! lipid homeostasis intersection_of: GO:0048878 ! chemical homeostasis -intersection_of: regulates_levels_of CHEBI:28868 ! fatty acid anion -relationship: regulates_levels_of CHEBI:28868 ! fatty acid anion +intersection_of: RO:0002332 CHEBI:28868 ! regulates levels of fatty acid anion +relationship: RO:0002332 CHEBI:28868 ! regulates levels of fatty acid anion [Term] id: GO:0055091 @@ -94228,8 +93699,8 @@ namespace: biological_process def: "Any process involved in the maintenance of an internal steady state of phospholipid within an organism or cell." [GOC:BHF, GOC:rl] is_a: GO:0055088 ! lipid homeostasis intersection_of: GO:0048878 ! chemical homeostasis -intersection_of: regulates_levels_of CHEBI:16247 ! phospholipid -relationship: regulates_levels_of CHEBI:16247 ! phospholipid +intersection_of: RO:0002332 CHEBI:16247 ! regulates levels of phospholipid +relationship: RO:0002332 CHEBI:16247 ! regulates levels of phospholipid [Term] id: GO:0055094 @@ -94240,8 +93711,8 @@ synonym: "response to lipoprotein particle stimulus" EXACT [GOC:dos] is_a: GO:0009719 ! response to endogenous stimulus is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:6495 ! lipoprotein -relationship: has_primary_input CHEBI:6495 ! lipoprotein +intersection_of: RO:0004009 CHEBI:6495 ! has primary input lipoprotein +relationship: RO:0004009 CHEBI:6495 ! has primary input lipoprotein [Term] id: GO:0055107 @@ -94250,12 +93721,12 @@ namespace: biological_process def: "The directed movement of proteins from the Golgi to a secretory granule. The secretory granule is a membrane-bounded particle, usually protein, formed in the granular endoplasmic reticulum and the Golgi complex." [GOC:curators] is_a: GO:0046907 ! intracellular transport intersection_of: GO:0006810 ! transport -intersection_of: has_target_end_location GO:0030141 ! secretory granule -intersection_of: has_target_start_location GO:0005794 ! Golgi apparatus -intersection_of: occurs_in GO:0005737 ! cytoplasm -relationship: has_target_end_location GO:0030141 ! secretory granule -relationship: has_target_start_location GO:0005794 ! Golgi apparatus -relationship: occurs_in GO:0005737 ! cytoplasm +intersection_of: BFO:0000066 GO:0005737 ! occurs in cytoplasm +intersection_of: RO:0002338 GO:0005794 ! has target start location Golgi apparatus +intersection_of: RO:0002339 GO:0030141 ! has target end location secretory granule +relationship: BFO:0000066 GO:0005737 ! occurs in cytoplasm +relationship: RO:0002338 GO:0005794 ! has target start location Golgi apparatus +relationship: RO:0002339 GO:0030141 ! has target end location secretory granule [Term] id: GO:0055108 @@ -94264,13 +93735,13 @@ namespace: biological_process def: "The directed movement of proteins from the Golgi to a transport vesicle. Continuously secreted proteins are sorted into transport vesicles that fuse with the plasma membrane, releasing their contents by exocytosis." [GOC:jid] is_a: GO:0046907 ! intracellular transport intersection_of: GO:0006810 ! transport -intersection_of: has_target_end_location GO:0030133 ! transport vesicle -intersection_of: has_target_start_location GO:0005794 ! Golgi apparatus -intersection_of: occurs_in GO:0005737 ! cytoplasm -relationship: has_target_end_location GO:0030133 ! transport vesicle -relationship: has_target_start_location GO:0005794 ! Golgi apparatus -relationship: occurs_in GO:0005737 ! cytoplasm +intersection_of: BFO:0000066 GO:0005737 ! occurs in cytoplasm +intersection_of: RO:0002338 GO:0005794 ! has target start location Golgi apparatus +intersection_of: RO:0002339 GO:0030133 ! has target end location transport vesicle +relationship: BFO:0000066 GO:0005737 ! occurs in cytoplasm relationship: part_of GO:0048193 ! Golgi vesicle transport +relationship: RO:0002338 GO:0005794 ! has target start location Golgi apparatus +relationship: RO:0002339 GO:0030133 ! has target end location transport vesicle [Term] id: GO:0055111 @@ -94290,8 +93761,8 @@ def: "Any process that modulates the frequency, rate or extent of cardiac muscle is_a: GO:0006942 ! regulation of striated muscle contraction is_a: GO:0008016 ! regulation of heart contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060048 ! cardiac muscle contraction -relationship: regulates GO:0060048 ! cardiac muscle contraction +intersection_of: RO:0002211 GO:0060048 ! regulates (processual) cardiac muscle contraction +relationship: RO:0002211 GO:0060048 ! regulates (processual) cardiac muscle contraction [Term] id: GO:0055118 @@ -94302,8 +93773,8 @@ is_a: GO:0045822 ! negative regulation of heart contraction is_a: GO:0045988 ! negative regulation of striated muscle contraction is_a: GO:0055117 ! regulation of cardiac muscle contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060048 ! cardiac muscle contraction -relationship: negatively_regulates GO:0060048 ! cardiac muscle contraction +intersection_of: RO:0002212 GO:0060048 ! negatively regulates cardiac muscle contraction +relationship: RO:0002212 GO:0060048 ! negatively regulates cardiac muscle contraction [Term] id: GO:0055123 @@ -94312,8 +93783,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the digestive system over time, from its formation to the mature structure. The digestive system is the entire structure in which digestion takes place. Digestion is all of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism." [GOC:jid] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001007 ! digestive system -relationship: results_in_development_of UBERON:0001007 ! digestive system +intersection_of: RO:0002296 UBERON:0001007 ! results in development of digestive system +relationship: RO:0002296 UBERON:0001007 ! results in development of digestive system [Term] id: GO:0055127 @@ -94355,9 +93826,9 @@ def: "The process in which a relatively unspecialized cell acquires specialized is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0030855 ! epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000216 ! Sertoli cell +intersection_of: RO:0002315 CL:0000216 ! results in acquisition of features of Sertoli cell relationship: part_of GO:0008584 ! male gonad development -relationship: results_in_acquisition_of_features_of CL:0000216 ! Sertoli cell +relationship: RO:0002315 CL:0000216 ! results in acquisition of features of Sertoli cell [Term] id: GO:0060009 @@ -94367,9 +93838,9 @@ def: "The process whose specific outcome is the progression of a Sertoli cell ov is_a: GO:0002064 ! epithelial cell development is_a: GO:0003006 ! developmental process involved in reproduction intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000216 ! Sertoli cell +intersection_of: RO:0002296 CL:0000216 ! results in development of Sertoli cell relationship: part_of GO:0060008 ! Sertoli cell differentiation -relationship: results_in_development_of CL:0000216 ! Sertoli cell +relationship: RO:0002296 CL:0000216 ! results in development of Sertoli cell [Term] id: GO:0060011 @@ -94378,9 +93849,9 @@ namespace: biological_process def: "The multiplication or reproduction of Sertoli cells, resulting in the expansion of the Sertoli cell population. A Sertoli cell is a supporting cell projecting inward from the basement membrane of seminiferous tubules." [GOC:dph] is_a: GO:0050673 ! epithelial cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000216 ! Sertoli cell -relationship: acts_on_population_of CL:0000216 ! Sertoli cell +intersection_of: RO:0012003 CL:0000216 ! acts on population of Sertoli cell relationship: part_of GO:0008584 ! male gonad development +relationship: RO:0012003 CL:0000216 ! acts on population of Sertoli cell [Term] id: GO:0060014 @@ -94389,8 +93860,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized features of a granulosa cell, a supporting cell for the developing female gamete in the ovary of mammals." [GOC:dph] is_a: GO:0030855 ! epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000501 ! granulosa cell -relationship: results_in_acquisition_of_features_of CL:0000501 ! granulosa cell +intersection_of: RO:0002315 CL:0000501 ! results in acquisition of features of granulosa cell +relationship: RO:0002315 CL:0000501 ! results in acquisition of features of granulosa cell [Term] id: GO:0060016 @@ -94399,9 +93870,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a granulosa cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a granulosa cell fate." [GOC:dph] is_a: GO:0002064 ! epithelial cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000501 ! granulosa cell +intersection_of: RO:0002296 CL:0000501 ! results in development of granulosa cell relationship: part_of GO:0060014 ! granulosa cell differentiation -relationship: results_in_development_of CL:0000501 ! granulosa cell +relationship: RO:0002296 CL:0000501 ! results in development of granulosa cell [Term] id: GO:0060017 @@ -94410,9 +93881,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the parathyroid gland over time, from its formation to the mature structure. The parathyroid gland is an organ specialised for secretion of parathyroid hormone." [GOC:dph, ISBN:0721662544] is_a: GO:0048732 ! gland development intersection_of: GO:0048732 ! gland development -intersection_of: results_in_development_of UBERON:0001132 ! parathyroid gland +intersection_of: RO:0002296 UBERON:0001132 ! results in development of parathyroid gland relationship: part_of GO:0035270 ! endocrine system development -relationship: results_in_development_of UBERON:0001132 ! parathyroid gland +relationship: RO:0002296 UBERON:0001132 ! results in development of parathyroid gland [Term] id: GO:0060019 @@ -94421,8 +93892,8 @@ namespace: biological_process def: "The process in which neuroepithelial cells of the neural tube give rise to radial glial cells, specialized bipotential progenitors cells of the brain. Differentiation includes the processes involved in commitment of a cell to a specific fate." [GOC:dph] is_a: GO:0010001 ! glial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000681 ! radial glial cell -relationship: results_in_acquisition_of_features_of CL:0000681 ! radial glial cell +intersection_of: RO:0002315 CL:0000681 ! results in acquisition of features of radial glial cell +relationship: RO:0002315 CL:0000681 ! results in acquisition of features of radial glial cell [Term] id: GO:0060021 @@ -94432,8 +93903,8 @@ def: "The biological process whose specific outcome is the progression of the ro synonym: "palatum development" EXACT [ISBN:0721662544] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0007375 ! roof of mouth -relationship: results_in_development_of UBERON:0007375 ! roof of mouth +intersection_of: RO:0002296 UBERON:0007375 ! results in development of roof of mouth +relationship: RO:0002296 UBERON:0007375 ! results in development of roof of mouth [Term] id: GO:0060022 @@ -94443,9 +93914,9 @@ def: "The biological process whose specific outcome is the progression of the ha synonym: "palatum durum development" EXACT [ISBN:0721662544] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003216 ! hard palate +intersection_of: RO:0002296 UBERON:0003216 ! results in development of hard palate relationship: part_of GO:0062009 ! secondary palate development -relationship: results_in_development_of UBERON:0003216 ! hard palate +relationship: RO:0002296 UBERON:0003216 ! results in development of hard palate [Term] id: GO:0060023 @@ -94456,10 +93927,10 @@ synonym: "palatum molle development" EXACT [ISBN:0721662544] synonym: "velum palatum development" EXACT [ISBN:0721662544] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001733 ! soft palate +intersection_of: RO:0002296 UBERON:0001733 ! results in development of soft palate relationship: never_in_taxon NCBITaxon:8782 ! Aves relationship: part_of GO:0062009 ! secondary palate development -relationship: results_in_development_of UBERON:0001733 ! soft palate +relationship: RO:0002296 UBERON:0001733 ! results in development of soft palate [Term] id: GO:0060034 @@ -94468,9 +93939,9 @@ namespace: biological_process def: "The process in which relatively unspecialized cells acquire specialized structural and/or functional features cells that make up the notochord. Differentiation includes the processes involved in commitment of a cell to a notochord cell fate." [GOC:dph] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0007005 ! notochordal cell +intersection_of: RO:0002315 CL:0007005 ! results in acquisition of features of notochordal cell relationship: part_of GO:0030903 ! notochord development -relationship: results_in_acquisition_of_features_of CL:0007005 ! notochordal cell +relationship: RO:0002315 CL:0007005 ! results in acquisition of features of notochordal cell [Term] id: GO:0060037 @@ -94479,9 +93950,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the structure it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear." [GOC:dph] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0008814 ! pharyngeal arch system +intersection_of: RO:0002296 UBERON:0008814 ! results in development of pharyngeal arch system relationship: part_of GO:0043009 ! chordate embryonic development -relationship: results_in_development_of UBERON:0008814 ! pharyngeal arch system +relationship: RO:0002296 UBERON:0008814 ! results in development of pharyngeal arch system [Term] id: GO:0060038 @@ -94493,9 +93964,9 @@ synonym: "cardiomyocyte proliferation" RELATED [GOC:dph, PMID:10074473] synonym: "heart muscle cell proliferation" EXACT [] is_a: GO:0014855 ! striated muscle cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000746 ! cardiac muscle cell -relationship: acts_on_population_of CL:0000746 ! cardiac muscle cell +intersection_of: RO:0012003 CL:0000746 ! acts on population of cardiac muscle cell relationship: part_of GO:0055017 ! cardiac muscle tissue growth +relationship: RO:0012003 CL:0000746 ! acts on population of cardiac muscle cell [Term] id: GO:0060039 @@ -94504,9 +93975,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the pericardium over time, from its formation to the mature structure. The pericardium is a double-walled sac that contains the heart and the roots of the aorta, vena cava and the pulmonary artery." [GOC:dph, GOC:rph, PMID:15138308, PMID:16376438] is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002407 ! pericardium +intersection_of: RO:0002296 UBERON:0002407 ! results in development of pericardium relationship: part_of GO:0007507 ! heart development -relationship: results_in_development_of UBERON:0002407 ! pericardium +relationship: RO:0002296 UBERON:0002407 ! results in development of pericardium [Term] id: GO:0060040 @@ -94515,10 +93986,10 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a bipolar cell, the last neuron to be generated in the retina." [GOC:ascb_2009, GOC:bf, GOC:dph, GOC:tb] is_a: GO:1905962 ! glutamatergic neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000748 ! retinal bipolar neuron +intersection_of: RO:0002315 CL:0000748 ! results in acquisition of features of retinal bipolar neuron relationship: part_of GO:0003407 ! neural retina development relationship: part_of GO:0060042 ! retina morphogenesis in camera-type eye -relationship: results_in_acquisition_of_features_of CL:0000748 ! retinal bipolar neuron +relationship: RO:0002315 CL:0000748 ! results in acquisition of features of retinal bipolar neuron [Term] id: GO:0060041 @@ -94531,9 +94002,9 @@ synonym: "retinal development" RELATED [GOC:dph, GOC:tb] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development intersection_of: part_of GO:0043010 ! camera-type eye development -intersection_of: results_in_development_of UBERON:0000966 ! retina +intersection_of: RO:0002296 UBERON:0000966 ! results in development of retina relationship: part_of GO:0043010 ! camera-type eye development -relationship: results_in_development_of UBERON:0000966 ! retina +relationship: RO:0002296 UBERON:0000966 ! results in development of retina [Term] id: GO:0060042 @@ -94544,10 +94015,10 @@ synonym: "retina morphogenesis in camera-style eye" EXACT [] synonym: "retinogenesis" EXACT [] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000966 ! retina +intersection_of: RO:0002298 UBERON:0000966 ! results in morphogenesis of retina relationship: part_of GO:0048593 ! camera-type eye morphogenesis relationship: part_of GO:0060041 ! retina development in camera-type eye -relationship: results_in_morphogenesis_of UBERON:0000966 ! retina +relationship: RO:0002298 UBERON:0000966 ! results in morphogenesis of retina [Term] id: GO:0060043 @@ -94559,9 +94030,9 @@ synonym: "regulation of heart muscle cell proliferation" EXACT [] is_a: GO:0042127 ! regulation of cell population proliferation is_a: GO:0055021 ! regulation of cardiac muscle tissue growth intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060038 ! cardiac muscle cell proliferation -relationship: regulates GO:0055017 ! cardiac muscle tissue growth -relationship: regulates GO:0060038 ! cardiac muscle cell proliferation +intersection_of: RO:0002211 GO:0060038 ! regulates (processual) cardiac muscle cell proliferation +relationship: RO:0002211 GO:0055017 ! regulates (processual) cardiac muscle tissue growth +relationship: RO:0002211 GO:0060038 ! regulates (processual) cardiac muscle cell proliferation [Term] id: GO:0060044 @@ -94573,9 +94044,9 @@ is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:0055022 ! negative regulation of cardiac muscle tissue growth is_a: GO:0060043 ! regulation of cardiac muscle cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060038 ! cardiac muscle cell proliferation -relationship: negatively_regulates GO:0055017 ! cardiac muscle tissue growth -relationship: negatively_regulates GO:0060038 ! cardiac muscle cell proliferation +intersection_of: RO:0002212 GO:0060038 ! negatively regulates cardiac muscle cell proliferation +relationship: RO:0002212 GO:0055017 ! negatively regulates cardiac muscle tissue growth +relationship: RO:0002212 GO:0060038 ! negatively regulates cardiac muscle cell proliferation [Term] id: GO:0060045 @@ -94587,9 +94058,9 @@ is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:0055023 ! positive regulation of cardiac muscle tissue growth is_a: GO:0060043 ! regulation of cardiac muscle cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060038 ! cardiac muscle cell proliferation -relationship: positively_regulates GO:0055017 ! cardiac muscle tissue growth -relationship: positively_regulates GO:0060038 ! cardiac muscle cell proliferation +intersection_of: RO:0002213 GO:0060038 ! positively regulates cardiac muscle cell proliferation +relationship: RO:0002213 GO:0055017 ! positively regulates cardiac muscle tissue growth +relationship: RO:0002213 GO:0060038 ! positively regulates cardiac muscle cell proliferation [Term] id: GO:0060047 @@ -94610,8 +94081,8 @@ def: "Muscle contraction of cardiac muscle tissue." [GOC:dph] synonym: "heart muscle contraction" EXACT [] is_a: GO:0006941 ! striated muscle contraction intersection_of: GO:0006936 ! muscle contraction -intersection_of: occurs_in UBERON:0001133 ! cardiac muscle tissue -relationship: occurs_in UBERON:0001133 ! cardiac muscle tissue +intersection_of: BFO:0000066 UBERON:0001133 ! occurs in cardiac muscle tissue +relationship: BFO:0000066 UBERON:0001133 ! occurs in cardiac muscle tissue relationship: part_of GO:0060047 ! heart contraction [Term] @@ -94643,9 +94114,9 @@ synonym: "Spemann's organizer formation" EXACT [] synonym: "Spemann-Mangold organizer formation" EXACT [] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003062 ! primitive knot +intersection_of: RO:0002297 UBERON:0003062 ! results in formation of anatomical entity primitive knot relationship: part_of GO:0031128 ! developmental induction -relationship: results_in_formation_of_anatomical_entity UBERON:0003062 ! primitive knot +relationship: RO:0002297 UBERON:0003062 ! results in formation of anatomical entity primitive knot [Term] id: GO:0060065 @@ -94656,8 +94127,8 @@ synonym: "Mullerian tract development" RELATED [] is_a: GO:0048513 ! animal organ development is_a: GO:0048608 ! reproductive structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000995 ! uterus -relationship: results_in_development_of UBERON:0000995 ! uterus +intersection_of: RO:0002296 UBERON:0000995 ! results in development of uterus +relationship: RO:0002296 UBERON:0000995 ! results in development of uterus [Term] id: GO:0060066 @@ -94669,8 +94140,8 @@ synonym: "Mullerian tract development" RELATED [] is_a: GO:0035295 ! tube development is_a: GO:0048608 ! reproductive structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003889 ! fallopian tube -relationship: results_in_development_of UBERON:0003889 ! fallopian tube +intersection_of: RO:0002296 UBERON:0003889 ! results in development of fallopian tube +relationship: RO:0002296 UBERON:0003889 ! results in development of fallopian tube [Term] id: GO:0060067 @@ -94680,8 +94151,8 @@ def: "The reproductive developmental process whose specific outcome is the progr synonym: "Mullerian tract development" RELATED [] is_a: GO:0048608 ! reproductive structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000002 ! uterine cervix -relationship: results_in_development_of UBERON:0000002 ! uterine cervix +intersection_of: RO:0002296 UBERON:0000002 ! results in development of uterine cervix +relationship: RO:0002296 UBERON:0000002 ! results in development of uterine cervix [Term] id: GO:0060068 @@ -94690,8 +94161,8 @@ namespace: biological_process def: "The reproductive developmental process whose specific outcome is the progression of the vagina over time, from its formation to the mature structure." [GOC:dph, GOC:ebc] is_a: GO:0030540 ! female genitalia development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000996 ! vagina -relationship: results_in_development_of UBERON:0000996 ! vagina +intersection_of: RO:0002296 UBERON:0000996 ! results in development of vagina +relationship: RO:0002296 UBERON:0000996 ! results in development of vagina [Term] id: GO:0060073 @@ -94785,8 +94256,8 @@ synonym: "serotonin release, neurotransmission" RELATED [GOC:tb] is_a: GO:0001820 ! serotonin secretion is_a: GO:0007269 ! neurotransmitter secretion intersection_of: GO:0007269 ! neurotransmitter secretion -intersection_of: has_primary_input CHEBI:350546 ! serotonin(1+) -relationship: has_primary_input CHEBI:350546 ! serotonin(1+) +intersection_of: RO:0004009 CHEBI:350546 ! has primary input serotonin(1+) +relationship: RO:0004009 CHEBI:350546 ! has primary input serotonin(1+) [Term] id: GO:0060113 @@ -94806,8 +94277,8 @@ synonym: "vestibular hair cell differentiation" EXACT [] is_a: GO:0035315 ! hair cell differentiation is_a: GO:0060113 ! inner ear receptor cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000609 ! vestibular hair cell -relationship: results_in_acquisition_of_features_of CL:0000609 ! vestibular hair cell +intersection_of: RO:0002315 CL:0000609 ! results in acquisition of features of vestibular hair cell +relationship: RO:0002315 CL:0000609 ! results in acquisition of features of vestibular hair cell [Term] id: GO:0060116 @@ -94818,10 +94289,10 @@ synonym: "vestibular hair cell morphogenesis" EXACT [] is_a: GO:0048598 ! embryonic morphogenesis is_a: GO:0048667 ! cell morphogenesis involved in neuron differentiation intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of CL:0000609 ! vestibular hair cell +intersection_of: RO:0002298 CL:0000609 ! results in morphogenesis of vestibular hair cell relationship: part_of GO:0042472 ! inner ear morphogenesis relationship: part_of GO:0060118 ! vestibular receptor cell development -relationship: results_in_morphogenesis_of CL:0000609 ! vestibular hair cell +relationship: RO:0002298 CL:0000609 ! results in morphogenesis of vestibular hair cell [Term] id: GO:0060117 @@ -94831,9 +94302,9 @@ def: "The process whose specific outcome is the progression of an auditory recep synonym: "auditory hair cell development" EXACT [] is_a: GO:0060119 ! inner ear receptor cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000202 ! auditory hair cell +intersection_of: RO:0002296 CL:0000202 ! results in development of auditory hair cell relationship: part_of GO:0042491 ! inner ear auditory receptor cell differentiation -relationship: results_in_development_of CL:0000202 ! auditory hair cell +relationship: RO:0002296 CL:0000202 ! results in development of auditory hair cell [Term] id: GO:0060118 @@ -94843,9 +94314,9 @@ def: "The process whose specific outcome is the progression of a vestibular rece synonym: "vestibular hair cell development" EXACT [] is_a: GO:0060119 ! inner ear receptor cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000609 ! vestibular hair cell +intersection_of: RO:0002296 CL:0000609 ! results in development of vestibular hair cell relationship: part_of GO:0060114 ! vestibular receptor cell differentiation -relationship: results_in_development_of CL:0000609 ! vestibular hair cell +relationship: RO:0002296 CL:0000609 ! results in development of vestibular hair cell [Term] id: GO:0060119 @@ -94863,8 +94334,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the regulated release of growth hormone from a cell." [GOC:dph] is_a: GO:0090276 ! regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030252 ! growth hormone secretion -relationship: regulates GO:0030252 ! growth hormone secretion +intersection_of: RO:0002211 GO:0030252 ! regulates (processual) growth hormone secretion +relationship: RO:0002211 GO:0030252 ! regulates (processual) growth hormone secretion [Term] id: GO:0060124 @@ -94874,8 +94345,8 @@ def: "Any process that increases the frequency, rate or extent of the regulated is_a: GO:0060123 ! regulation of growth hormone secretion is_a: GO:0090277 ! positive regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030252 ! growth hormone secretion -relationship: positively_regulates GO:0030252 ! growth hormone secretion +intersection_of: RO:0002213 GO:0030252 ! positively regulates growth hormone secretion +relationship: RO:0002213 GO:0030252 ! positively regulates growth hormone secretion [Term] id: GO:0060125 @@ -94885,8 +94356,8 @@ def: "Any process that decreases or stops the frequency, rate or extent of the r is_a: GO:0060123 ! regulation of growth hormone secretion is_a: GO:0090278 ! negative regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030252 ! growth hormone secretion -relationship: negatively_regulates GO:0030252 ! growth hormone secretion +intersection_of: RO:0002212 GO:0030252 ! negatively regulates growth hormone secretion +relationship: RO:0002212 GO:0030252 ! negatively regulates growth hormone secretion [Term] id: GO:0060126 @@ -94901,9 +94372,9 @@ synonym: "somatotropic cell differentiation" RELATED [] synonym: "somatrophic cell differentiation" RELATED [] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000295 ! somatotropin secreting cell +intersection_of: RO:0002315 CL:0000295 ! results in acquisition of features of somatotropin secreting cell relationship: part_of GO:0021984 ! adenohypophysis development -relationship: results_in_acquisition_of_features_of CL:0000295 ! somatotropin secreting cell +relationship: RO:0002315 CL:0000295 ! results in acquisition of features of somatotropin secreting cell [Term] id: GO:0060127 @@ -94920,9 +94391,9 @@ synonym: "mammotrophic cell differentiation" EXACT [] synonym: "mammotropic cell differentiation" EXACT [] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000439 ! prolactin secreting cell +intersection_of: RO:0002315 CL:0000439 ! results in acquisition of features of prolactin secreting cell relationship: part_of GO:0021984 ! adenohypophysis development -relationship: results_in_acquisition_of_features_of CL:0000439 ! prolactin secreting cell +relationship: RO:0002315 CL:0000439 ! results in acquisition of features of prolactin secreting cell [Term] id: GO:0060128 @@ -94936,9 +94407,9 @@ synonym: "corticotroph differentiation" EXACT [] synonym: "corticotrophin hormone secreting cell differentiation" RELATED [] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000467 ! adrenocorticotropic hormone secreting cell +intersection_of: RO:0002315 CL:0000467 ! results in acquisition of features of adrenocorticotropic hormone secreting cell relationship: part_of GO:0021984 ! adenohypophysis development -relationship: results_in_acquisition_of_features_of CL:0000467 ! adrenocorticotropic hormone secreting cell +relationship: RO:0002315 CL:0000467 ! results in acquisition of features of adrenocorticotropic hormone secreting cell [Term] id: GO:0060131 @@ -94952,9 +94423,9 @@ synonym: "corticotroph development" RELATED [] synonym: "corticotrophin hormone secreting cell development" RELATED [] is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000467 ! adrenocorticotropic hormone secreting cell +intersection_of: RO:0002296 CL:0000467 ! results in development of adrenocorticotropic hormone secreting cell relationship: part_of GO:0060128 ! corticotropin hormone secreting cell differentiation -relationship: results_in_development_of CL:0000467 ! adrenocorticotropic hormone secreting cell +relationship: RO:0002296 CL:0000467 ! results in development of adrenocorticotropic hormone secreting cell [Term] id: GO:0060132 @@ -94971,9 +94442,9 @@ synonym: "mammotrophic cell development" EXACT [] synonym: "mammotropic cell development" EXACT [] is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000439 ! prolactin secreting cell +intersection_of: RO:0002296 CL:0000439 ! results in development of prolactin secreting cell relationship: part_of GO:0060127 ! prolactin secreting cell differentiation -relationship: results_in_development_of CL:0000439 ! prolactin secreting cell +relationship: RO:0002296 CL:0000439 ! results in development of prolactin secreting cell [Term] id: GO:0060133 @@ -94988,9 +94459,9 @@ synonym: "somatotropic cell development" EXACT [] synonym: "somatrophic cell development" RELATED [] is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000295 ! somatotropin secreting cell +intersection_of: RO:0002296 CL:0000295 ! results in development of somatotropin secreting cell relationship: part_of GO:0060126 ! somatotropin secreting cell differentiation -relationship: results_in_development_of CL:0000295 ! somatotropin secreting cell +relationship: RO:0002296 CL:0000295 ! results in development of somatotropin secreting cell [Term] id: GO:0060135 @@ -95021,8 +94492,8 @@ def: "Any process that modulates the frequency, rate or extent of the formation is_a: GO:0050793 ! regulation of developmental process is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0000768 ! syncytium formation by plasma membrane fusion -relationship: regulates GO:0000768 ! syncytium formation by plasma membrane fusion +intersection_of: RO:0002211 GO:0000768 ! regulates (processual) syncytium formation by plasma membrane fusion +relationship: RO:0002211 GO:0000768 ! regulates (processual) syncytium formation by plasma membrane fusion [Term] id: GO:0060143 @@ -95033,8 +94504,8 @@ is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051130 ! positive regulation of cellular component organization is_a: GO:0060142 ! regulation of syncytium formation by plasma membrane fusion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0000768 ! syncytium formation by plasma membrane fusion -relationship: positively_regulates GO:0000768 ! syncytium formation by plasma membrane fusion +intersection_of: RO:0002213 GO:0000768 ! positively regulates syncytium formation by plasma membrane fusion +relationship: RO:0002213 GO:0000768 ! positively regulates syncytium formation by plasma membrane fusion [Term] id: GO:0060156 @@ -95046,8 +94517,8 @@ is_a: GO:0007589 ! body fluid secretion is_a: GO:0032941 ! secretion by tissue is_a: GO:0060004 ! reflex relationship: in_taxon NCBITaxon:40674 {all_only="true"} ! Mammalia -relationship: only_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of GO:0007595 ! lactation +relationship: RO:0002160 NCBITaxon:40674 ! only in taxon Mammalia [Term] id: GO:0060157 @@ -95056,10 +94527,10 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the urinary bladder over time, from its formation to the mature structure. The urinary bladder is an elastic, muscular sac situated in the anterior part of the pelvic cavity in which urine collects before excretion." [GOC:dph, GOC:ln, GOC:mr, PMID:11768524, PMID:18276178, PMID:538956] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001255 ! urinary bladder +intersection_of: RO:0002296 UBERON:0001255 ! results in development of urinary bladder relationship: never_in_taxon NCBITaxon:8782 ! Aves relationship: part_of GO:0072001 ! renal system development -relationship: results_in_development_of UBERON:0001255 ! urinary bladder +relationship: RO:0002296 UBERON:0001255 ! results in development of urinary bladder [Term] id: GO:0060166 @@ -95068,9 +94539,9 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of the olfactory pit from an initial condition to its mature state. This process begins with the formation of the olfactory pit, which is an indentation of the olfactory placode, and ends when the pits hollows out to form the nasopharynx." [GOC:dph, ISBN:0124020607] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005870 ! olfactory pit +intersection_of: RO:0002296 UBERON:0005870 ! results in development of olfactory pit relationship: part_of GO:0043584 ! nose development -relationship: results_in_development_of UBERON:0005870 ! olfactory pit +relationship: RO:0002296 UBERON:0005870 ! results in development of olfactory pit property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22589" xsd:anyURI [Term] @@ -95081,8 +94552,8 @@ def: "Any process that modulates the frequency, rate or extent of the adenosine synonym: "regulation of adenosine receptor signalling pathway" EXACT [GOC:mah] is_a: GO:0008277 ! regulation of G protein-coupled receptor signaling pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001973 ! G protein-coupled adenosine receptor signaling pathway -relationship: regulates GO:0001973 ! G protein-coupled adenosine receptor signaling pathway +intersection_of: RO:0002211 GO:0001973 ! regulates (processual) G protein-coupled adenosine receptor signaling pathway +relationship: RO:0002211 GO:0001973 ! regulates (processual) G protein-coupled adenosine receptor signaling pathway [Term] id: GO:0060168 @@ -95093,8 +94564,8 @@ synonym: "positive regulation of adenosine receptor signalling pathway" EXACT [G is_a: GO:0045745 ! positive regulation of G protein-coupled receptor signaling pathway is_a: GO:0060167 ! regulation of adenosine receptor signaling pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001973 ! G protein-coupled adenosine receptor signaling pathway -relationship: positively_regulates GO:0001973 ! G protein-coupled adenosine receptor signaling pathway +intersection_of: RO:0002213 GO:0001973 ! positively regulates G protein-coupled adenosine receptor signaling pathway +relationship: RO:0002213 GO:0001973 ! positively regulates G protein-coupled adenosine receptor signaling pathway [Term] id: GO:0060169 @@ -95105,8 +94576,8 @@ synonym: "negative regulation of adenosine receptor signalling pathway" EXACT [G is_a: GO:0045744 ! negative regulation of G protein-coupled receptor signaling pathway is_a: GO:0060167 ! regulation of adenosine receptor signaling pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001973 ! G protein-coupled adenosine receptor signaling pathway -relationship: negatively_regulates GO:0001973 ! G protein-coupled adenosine receptor signaling pathway +intersection_of: RO:0002212 GO:0001973 ! negatively regulates G protein-coupled adenosine receptor signaling pathway +relationship: RO:0002212 GO:0001973 ! negatively regulates G protein-coupled adenosine receptor signaling pathway [Term] id: GO:0060170 @@ -95137,8 +94608,8 @@ synonym: "paired limb/fin development" EXACT [] xref: Wikipedia:Limb_development is_a: GO:0048736 ! appendage development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004708 ! paired limb/fin -relationship: results_in_development_of UBERON:0004708 ! paired limb/fin +intersection_of: RO:0002296 UBERON:0004708 ! results in development of paired limb/fin +relationship: RO:0002296 UBERON:0004708 ! results in development of paired limb/fin [Term] id: GO:0060174 @@ -95149,9 +94620,9 @@ synonym: "limb formation" EXACT [] synonym: "limbbud formation" EXACT [] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002101 ! limb +intersection_of: RO:0002297 UBERON:0002101 ! results in formation of anatomical entity limb relationship: part_of GO:0035108 ! limb morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002101 ! limb +relationship: RO:0002297 UBERON:0002101 ! results in formation of anatomical entity limb [Term] id: GO:0060206 @@ -95179,9 +94650,9 @@ namespace: biological_process def: "Formation of the endocardium of the heart. The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers." [GOC:bf, GOC:dph, PMID:17722983] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002165 ! endocardium +intersection_of: RO:0002297 UBERON:0002165 ! results in formation of anatomical entity endocardium relationship: part_of GO:0003160 ! endocardium morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002165 ! endocardium +relationship: RO:0002297 UBERON:0002165 ! results in formation of anatomical entity endocardium [Term] id: GO:0060218 @@ -95194,9 +94665,9 @@ synonym: "hemopoietic stem cell differentiation" EXACT [] is_a: GO:0002244 ! hematopoietic progenitor cell differentiation is_a: GO:0048863 ! stem cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000037 ! hematopoietic stem cell +intersection_of: RO:0002315 CL:0000037 ! results in acquisition of features of hematopoietic stem cell relationship: part_of GO:0030097 ! hemopoiesis -relationship: results_in_acquisition_of_features_of CL:0000037 ! hematopoietic stem cell +relationship: RO:0002315 CL:0000037 ! results in acquisition of features of hematopoietic stem cell [Term] id: GO:0060219 @@ -95205,10 +94676,10 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized features of a photoreceptor cell in a camera-type eye." [GOC:ascb_2009, GOC:dph, GOC:tb] is_a: GO:0001754 ! eye photoreceptor cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0010009 ! camera-type eye photoreceptor cell +intersection_of: RO:0002315 CL:0010009 ! results in acquisition of features of camera-type eye photoreceptor cell relationship: part_of GO:0003407 ! neural retina development relationship: part_of GO:0060042 ! retina morphogenesis in camera-type eye -relationship: results_in_acquisition_of_features_of CL:0010009 ! camera-type eye photoreceptor cell +relationship: RO:0002315 CL:0010009 ! results in acquisition of features of camera-type eye photoreceptor cell [Term] id: GO:0060221 @@ -95217,8 +94688,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized features of a retinal rod cell." [GOC:dph] is_a: GO:0060219 ! camera-type eye photoreceptor cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000604 ! retinal rod cell -relationship: results_in_acquisition_of_features_of CL:0000604 ! retinal rod cell +intersection_of: RO:0002315 CL:0000604 ! results in acquisition of features of retinal rod cell +relationship: RO:0002315 CL:0000604 ! results in acquisition of features of retinal rod cell [Term] id: GO:0060231 @@ -95229,10 +94700,10 @@ synonym: "epithelial cell differentiation from mesenchymal cell" EXACT [GOC:BHF, synonym: "mesenchymal-epithelial transition" EXACT [GOC:dph] is_a: GO:0030855 ! epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: has_primary_input CL:0008019 ! mesenchymal cell -intersection_of: results_in_acquisition_of_features_of CL:0000066 ! epithelial cell -relationship: has_primary_input CL:0008019 ! mesenchymal cell -relationship: results_in_acquisition_of_features_of CL:0000066 ! epithelial cell +intersection_of: RO:0002315 CL:0000066 ! results in acquisition of features of epithelial cell +intersection_of: RO:0004009 CL:0008019 ! has primary input mesenchymal cell +relationship: RO:0002315 CL:0000066 ! results in acquisition of features of epithelial cell +relationship: RO:0004009 CL:0008019 ! has primary input mesenchymal cell [Term] id: GO:0060249 @@ -95249,8 +94720,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of glial cell proliferation." [GOC:dph, GOC:tb] is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014009 ! glial cell proliferation -relationship: regulates GO:0014009 ! glial cell proliferation +intersection_of: RO:0002211 GO:0014009 ! regulates (processual) glial cell proliferation +relationship: RO:0002211 GO:0014009 ! regulates (processual) glial cell proliferation [Term] id: GO:0060252 @@ -95261,8 +94732,8 @@ is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:0014015 ! positive regulation of gliogenesis is_a: GO:0060251 ! regulation of glial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014009 ! glial cell proliferation -relationship: positively_regulates GO:0014009 ! glial cell proliferation +intersection_of: RO:0002213 GO:0014009 ! positively regulates glial cell proliferation +relationship: RO:0002213 GO:0014009 ! positively regulates glial cell proliferation [Term] id: GO:0060253 @@ -95273,8 +94744,8 @@ is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:0014014 ! negative regulation of gliogenesis is_a: GO:0060251 ! regulation of glial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014009 ! glial cell proliferation -relationship: negatively_regulates GO:0014009 ! glial cell proliferation +intersection_of: RO:0002212 GO:0014009 ! negatively regulates glial cell proliferation +relationship: RO:0002212 GO:0014009 ! negatively regulates glial cell proliferation [Term] id: GO:0060255 @@ -95283,8 +94754,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [GOC:dph, GOC:tb] is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0043170 ! macromolecule metabolic process -relationship: regulates GO:0043170 ! macromolecule metabolic process +intersection_of: RO:0002211 GO:0043170 ! regulates (processual) macromolecule metabolic process +relationship: RO:0002211 GO:0043170 ! regulates (processual) macromolecule metabolic process [Term] id: GO:0060259 @@ -95294,8 +94765,8 @@ def: "Any process that modulates the rate, frequency or extent of the behavior a synonym: "regulation of feeding behaviour" EXACT [GOC:dph, GOC:tb] is_a: GO:0050795 ! regulation of behavior intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007631 ! feeding behavior -relationship: regulates GO:0007631 ! feeding behavior +intersection_of: RO:0002211 GO:0007631 ! regulates (processual) feeding behavior +relationship: RO:0002211 GO:0007631 ! regulates (processual) feeding behavior [Term] id: GO:0060271 @@ -95314,7 +94785,7 @@ is_a: GO:0044782 ! cilium organization is_a: GO:0070925 ! organelle assembly is_a: GO:0120031 ! plasma membrane bounded cell projection assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0005929 ! cilium +intersection_of: RO:0002588 GO:0005929 ! results in assembly of cilium relationship: has_part GO:0035082 ! axoneme assembly relationship: has_part GO:0035735 ! intraciliary transport involved in cilium assembly relationship: has_part GO:0061512 ! protein localization to cilium @@ -95327,8 +94798,8 @@ relationship: never_in_taxon NCBITaxon:3378 ! Gnetales relationship: never_in_taxon NCBITaxon:3398 ! Magnoliopsida relationship: never_in_taxon NCBITaxon:4890 ! Ascomycota relationship: never_in_taxon NCBITaxon:5782 ! Dictyostelium -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota -relationship: results_in_assembly_of GO:0005929 ! cilium +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota +relationship: RO:0002588 GO:0005929 ! results in assembly of cilium relationship: starts_with GO:0097711 ! ciliary basal body-plasma membrane docking [Term] @@ -95338,9 +94809,9 @@ namespace: biological_process def: "Any process that modulates the rate or extent of the process whose specific outcome is the progression of an oocyte over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell." [GOC:dph, GOC:tb, PMID:2394318] is_a: GO:1905879 ! regulation of oogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048599 ! oocyte development -relationship: regulates GO:0048477 ! oogenesis -relationship: regulates GO:0048599 ! oocyte development +intersection_of: RO:0002211 GO:0048599 ! regulates (processual) oocyte development +relationship: RO:0002211 GO:0048477 ! regulates (processual) oogenesis +relationship: RO:0002211 GO:0048599 ! regulates (processual) oocyte development [Term] id: GO:0060282 @@ -95351,8 +94822,8 @@ is_a: GO:0010720 ! positive regulation of cell development is_a: GO:0060281 ! regulation of oocyte development is_a: GO:2000243 ! positive regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048599 ! oocyte development -relationship: positively_regulates GO:0048599 ! oocyte development +intersection_of: RO:0002213 GO:0048599 ! positively regulates oocyte development +relationship: RO:0002213 GO:0048599 ! positively regulates oocyte development [Term] id: GO:0060283 @@ -95363,8 +94834,8 @@ is_a: GO:0010721 ! negative regulation of cell development is_a: GO:0060281 ! regulation of oocyte development is_a: GO:2000242 ! negative regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048599 ! oocyte development -relationship: negatively_regulates GO:0048599 ! oocyte development +intersection_of: RO:0002212 GO:0048599 ! negatively regulates oocyte development +relationship: RO:0002212 GO:0048599 ! negatively regulates oocyte development [Term] id: GO:0060284 @@ -95373,8 +94844,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency or extent of the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate." [GOC:dph, GOC:tb] is_a: GO:0045595 ! regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048468 ! cell development -relationship: regulates GO:0048468 ! cell development +intersection_of: RO:0002211 GO:0048468 ! regulates (processual) cell development +relationship: RO:0002211 GO:0048468 ! regulates (processual) cell development [Term] id: GO:0060285 @@ -95408,9 +94879,9 @@ def: "Any process that modulates the rate frequency or extent of cilium movement is_a: GO:0003352 ! regulation of cilium movement is_a: GO:1902019 ! regulation of cilium-dependent cell motility intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060294 ! cilium movement involved in cell motility -relationship: regulates GO:0060285 ! cilium-dependent cell motility -relationship: regulates GO:0060294 ! cilium movement involved in cell motility +intersection_of: RO:0002211 GO:0060294 ! regulates (processual) cilium movement involved in cell motility +relationship: RO:0002211 GO:0060285 ! regulates (processual) cilium-dependent cell motility +relationship: RO:0002211 GO:0060294 ! regulates (processual) cilium movement involved in cell motility [Term] id: GO:0060297 @@ -95421,9 +94892,9 @@ synonym: "regulation of sarcomere organisation" EXACT [GOC:mah] is_a: GO:0110020 ! regulation of actomyosin structure organization is_a: GO:1902903 ! regulation of supramolecular fiber organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0045214 ! sarcomere organization -relationship: regulates GO:0045214 ! sarcomere organization -relationship: regulates GO:0097435 ! supramolecular fiber organization +intersection_of: RO:0002211 GO:0045214 ! regulates (processual) sarcomere organization +relationship: RO:0002211 GO:0045214 ! regulates (processual) sarcomere organization +relationship: RO:0002211 GO:0097435 ! regulates (processual) supramolecular fiber organization [Term] id: GO:0060298 @@ -95436,10 +94907,10 @@ is_a: GO:0051495 ! positive regulation of cytoskeleton organization is_a: GO:0060297 ! regulation of sarcomere organization is_a: GO:1902905 ! positive regulation of supramolecular fiber organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0045214 ! sarcomere organization -relationship: positively_regulates GO:0045214 ! sarcomere organization -relationship: positively_regulates GO:0051146 ! striated muscle cell differentiation -relationship: positively_regulates GO:0097435 ! supramolecular fiber organization +intersection_of: RO:0002213 GO:0045214 ! positively regulates sarcomere organization +relationship: RO:0002213 GO:0045214 ! positively regulates sarcomere organization +relationship: RO:0002213 GO:0051146 ! positively regulates striated muscle cell differentiation +relationship: RO:0002213 GO:0097435 ! positively regulates supramolecular fiber organization [Term] id: GO:0060299 @@ -95453,11 +94924,11 @@ is_a: GO:0060297 ! regulation of sarcomere organization is_a: GO:1902116 ! negative regulation of organelle assembly is_a: GO:1902904 ! negative regulation of supramolecular fiber organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0045214 ! sarcomere organization -relationship: negatively_regulates GO:0045214 ! sarcomere organization -relationship: negatively_regulates GO:0048468 ! cell development -relationship: negatively_regulates GO:0070925 ! organelle assembly -relationship: negatively_regulates GO:0097435 ! supramolecular fiber organization +intersection_of: RO:0002212 GO:0045214 ! negatively regulates sarcomere organization +relationship: RO:0002212 GO:0045214 ! negatively regulates sarcomere organization +relationship: RO:0002212 GO:0048468 ! negatively regulates cell development +relationship: RO:0002212 GO:0070925 ! negatively regulates organelle assembly +relationship: RO:0002212 GO:0097435 ! negatively regulates supramolecular fiber organization [Term] id: GO:0060322 @@ -95466,8 +94937,8 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of a head from an initial condition to its mature state. The head is the anterior-most division of the body." [GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000033 ! head -relationship: results_in_development_of UBERON:0000033 ! head +intersection_of: RO:0002296 UBERON:0000033 ! results in development of head +relationship: RO:0002296 UBERON:0000033 ! results in development of head [Term] id: GO:0060323 @@ -95476,10 +94947,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the head are generated and organized. The head is the anterior-most division of the body." [GOC:dph] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000033 ! head +intersection_of: RO:0002298 UBERON:0000033 ! results in morphogenesis of head relationship: part_of GO:0010171 ! body morphogenesis relationship: part_of GO:0060322 ! head development -relationship: results_in_morphogenesis_of UBERON:0000033 ! head +relationship: RO:0002298 UBERON:0000033 ! results in morphogenesis of head [Term] id: GO:0060324 @@ -95488,9 +94959,9 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of a face from an initial condition to its mature state. The face is the ventral division of the head." [GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001456 ! face +intersection_of: RO:0002296 UBERON:0001456 ! results in development of face relationship: part_of GO:0060322 ! head development -relationship: results_in_development_of UBERON:0001456 ! face +relationship: RO:0002296 UBERON:0001456 ! results in development of face [Term] id: GO:0060325 @@ -95499,10 +94970,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the face are generated and organized. The face is the ventral division of the head." [GOC:dph] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001456 ! face +intersection_of: RO:0002298 UBERON:0001456 ! results in morphogenesis of face relationship: part_of GO:0060323 ! head morphogenesis relationship: part_of GO:0060324 ! face development -relationship: results_in_morphogenesis_of UBERON:0001456 ! face +relationship: RO:0002298 UBERON:0001456 ! results in morphogenesis of face [Term] id: GO:0060326 @@ -95512,9 +94983,9 @@ def: "The directed movement of a motile cell guided by a specific chemical conce is_a: GO:0006935 ! chemotaxis is_a: GO:0016477 ! cell migration intersection_of: GO:0006935 ! chemotaxis -intersection_of: results_in_movement_of CL:0000000 ! cell +intersection_of: RO:0002565 CL:0000000 ! results in movement of cell relationship: part_of GO:0070887 ! cellular response to chemical stimulus -relationship: results_in_movement_of CL:0000000 ! cell +relationship: RO:0002565 CL:0000000 ! results in movement of cell [Term] id: GO:0060341 @@ -95525,8 +94996,8 @@ synonym: "regulation of cellular localisation" EXACT [GOC:mah] is_a: GO:0032879 ! regulation of localization is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051641 ! cellular localization -relationship: regulates GO:0051641 ! cellular localization +intersection_of: RO:0002211 GO:0051641 ! regulates (processual) cellular localization +relationship: RO:0002211 GO:0051641 ! regulates (processual) cellular localization [Term] id: GO:0060343 @@ -95537,10 +95008,10 @@ synonym: "trabecula biogenesis" RELATED [GOC:dph] synonym: "trabeculation" EXACT [GOC:dph] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000440 ! trabecula +intersection_of: RO:0002297 UBERON:0000440 ! results in formation of anatomical entity trabecula relationship: part_of GO:0009887 ! animal organ morphogenesis relationship: part_of GO:0061383 ! trabecula morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0000440 ! trabecula +relationship: RO:0002297 UBERON:0000440 ! results in formation of anatomical entity trabecula [Term] id: GO:0060344 @@ -95551,9 +95022,9 @@ synonym: "liver trabecula biogenesis" RELATED [] synonym: "liver trabeculation" EXACT [GOC:dph] is_a: GO:0060343 ! trabecula formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0010183 ! liver trabecula +intersection_of: RO:0002297 UBERON:0010183 ! results in formation of anatomical entity liver trabecula relationship: part_of GO:0001889 ! liver development -relationship: results_in_formation_of_anatomical_entity UBERON:0010183 ! liver trabecula +relationship: RO:0002297 UBERON:0010183 ! results in formation of anatomical entity liver trabecula [Term] id: GO:0060345 @@ -95564,9 +95035,9 @@ synonym: "spleen trabecula biogenesis" RELATED [GOC:dph] synonym: "spleen trabeculation" EXACT [GOC:dph] is_a: GO:0060343 ! trabecula formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001265 ! trabecula of spleen +intersection_of: RO:0002297 UBERON:0001265 ! results in formation of anatomical entity trabecula of spleen relationship: part_of GO:0048536 ! spleen development -relationship: results_in_formation_of_anatomical_entity UBERON:0001265 ! trabecula of spleen +relationship: RO:0002297 UBERON:0001265 ! results in formation of anatomical entity trabecula of spleen [Term] id: GO:0060346 @@ -95580,10 +95051,10 @@ synonym: "skeletal trabecula formation" EXACT [GOC:dph] synonym: "skeletal trabeculation" EXACT [GOC:dph] is_a: GO:0060343 ! trabecula formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0008867 ! trabecular network of bone +intersection_of: RO:0002297 UBERON:0008867 ! results in formation of anatomical entity trabecular network of bone relationship: part_of GO:0048705 ! skeletal system morphogenesis relationship: part_of GO:0061430 ! bone trabecula morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0008867 ! trabecular network of bone +relationship: RO:0002297 UBERON:0008867 ! results in formation of anatomical entity trabecular network of bone [Term] id: GO:0060347 @@ -95596,10 +95067,10 @@ synonym: "heart trabecula biogenesis" RELATED [GOC:dph] synonym: "heart trabeculation" EXACT [GOC:dph] is_a: GO:0060343 ! trabecula formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002511 ! trabecula carnea +intersection_of: RO:0002297 UBERON:0002511 ! results in formation of anatomical entity trabecula carnea relationship: part_of GO:0003206 ! cardiac chamber morphogenesis relationship: part_of GO:0061384 ! heart trabecula morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002511 ! trabecula carnea +relationship: RO:0002297 UBERON:0002511 ! results in formation of anatomical entity trabecula carnea [Term] id: GO:0060348 @@ -95608,9 +95079,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of bone over time, from its formation to the mature structure. Bone is the hard skeletal connective tissue consisting of both mineral and cellular components." [GOC:dph] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048513 ! animal organ development -intersection_of: results_in_development_of UBERON:0001474 ! bone element +intersection_of: RO:0002296 UBERON:0001474 ! results in development of bone element relationship: part_of GO:0001501 ! skeletal system development -relationship: results_in_development_of UBERON:0001474 ! bone element +relationship: RO:0002296 UBERON:0001474 ! results in development of bone element [Term] id: GO:0060349 @@ -95619,10 +95090,10 @@ namespace: biological_process def: "The process in which bones are generated and organized." [GOC:dph] is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001474 ! bone element +intersection_of: RO:0002298 UBERON:0001474 ! results in morphogenesis of bone element relationship: part_of GO:0048705 ! skeletal system morphogenesis relationship: part_of GO:0060348 ! bone development -relationship: results_in_morphogenesis_of UBERON:0001474 ! bone element +relationship: RO:0002298 UBERON:0001474 ! results in morphogenesis of bone element [Term] id: GO:0060350 @@ -95631,8 +95102,8 @@ namespace: biological_process def: "The process in which bones are generated and organized as a result of the conversion of initial cartilaginous anlage into bone." [GOC:dph, PMID:11680679] is_a: GO:0060349 ! bone morphogenesis intersection_of: GO:0060349 ! bone morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002513 ! endochondral bone -relationship: results_in_morphogenesis_of UBERON:0002513 ! endochondral bone +intersection_of: RO:0002298 UBERON:0002513 ! results in morphogenesis of endochondral bone +relationship: RO:0002298 UBERON:0002513 ! results in morphogenesis of endochondral bone [Term] id: GO:0060351 @@ -95653,8 +95124,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to ammonia" EXACT [] is_a: GO:1901698 ! response to nitrogen compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:28938 ! ammonium -relationship: has_primary_input CHEBI:28938 ! ammonium +intersection_of: RO:0004009 CHEBI:28938 ! has primary input ammonium +relationship: RO:0004009 CHEBI:28938 ! has primary input ammonium [Term] id: GO:0060361 @@ -95670,8 +95141,8 @@ namespace: biological_process def: "The process in which any suture between cranial bones is generated and organized." [GOC:dph, GOC:pr, GOC:sl] is_a: GO:0097094 ! craniofacial suture morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003685 ! cranial suture -relationship: results_in_morphogenesis_of UBERON:0003685 ! cranial suture +intersection_of: RO:0002298 UBERON:0003685 ! results in morphogenesis of cranial suture +relationship: RO:0002298 UBERON:0003685 ! results in morphogenesis of cranial suture [Term] id: GO:0060364 @@ -95681,8 +95152,8 @@ def: "The process in which the frontal suture is generated and organized." [GOC: synonym: "interfrontal suture morphogenesis" EXACT [] is_a: GO:0060363 ! cranial suture morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002490 ! frontal suture -relationship: results_in_morphogenesis_of UBERON:0002490 ! frontal suture +intersection_of: RO:0002298 UBERON:0002490 ! results in morphogenesis of frontal suture +relationship: RO:0002298 UBERON:0002490 ! results in morphogenesis of frontal suture [Term] id: GO:0060365 @@ -95691,8 +95162,8 @@ namespace: biological_process def: "The process in which the coronal suture is generated and organized." [GOC:dph, GOC:sl] is_a: GO:0060363 ! cranial suture morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002489 ! coronal suture -relationship: results_in_morphogenesis_of UBERON:0002489 ! coronal suture +intersection_of: RO:0002298 UBERON:0002489 ! results in morphogenesis of coronal suture +relationship: RO:0002298 UBERON:0002489 ! results in morphogenesis of coronal suture [Term] id: GO:0060366 @@ -95701,8 +95172,8 @@ namespace: biological_process def: "The process in which the lambdoid suture is generated and organized." [GOC:dph, GOC:sl] is_a: GO:0060363 ! cranial suture morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002491 ! lambdoid suture -relationship: results_in_morphogenesis_of UBERON:0002491 ! lambdoid suture +intersection_of: RO:0002298 UBERON:0002491 ! results in morphogenesis of lambdoid suture +relationship: RO:0002298 UBERON:0002491 ! results in morphogenesis of lambdoid suture [Term] id: GO:0060367 @@ -95711,8 +95182,8 @@ namespace: biological_process def: "The process in which the sagittal suture is generated and organized." [GOC:dph, GOC:sl] is_a: GO:0060363 ! cranial suture morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002492 ! sagittal suture -relationship: results_in_morphogenesis_of UBERON:0002492 ! sagittal suture +intersection_of: RO:0002298 UBERON:0002492 ! results in morphogenesis of sagittal suture +relationship: RO:0002298 UBERON:0002492 ! results in morphogenesis of sagittal suture [Term] id: GO:0060379 @@ -95724,8 +95195,8 @@ synonym: "myocardial precursor cell differentiation" EXACT [GOC:mtg_heart] is_a: GO:0010002 ! cardioblast differentiation is_a: GO:0045445 ! myoblast differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000513 ! cardiac muscle myoblast -relationship: results_in_acquisition_of_features_of CL:0000513 ! cardiac muscle myoblast +intersection_of: RO:0002315 CL:0000513 ! results in acquisition of features of cardiac muscle myoblast +relationship: RO:0002315 CL:0000513 ! results in acquisition of features of cardiac muscle myoblast [Term] id: GO:0060404 @@ -95735,8 +95206,8 @@ def: "The removal of tubulin heterodimers from one or both ends of an axonemal m is_a: GO:0010938 ! cytoplasmic microtubule depolymerization is_a: GO:0061523 ! cilium disassembly intersection_of: GO:0007019 ! microtubule depolymerization -intersection_of: occurs_in GO:0005930 ! axoneme -relationship: occurs_in GO:0005930 ! axoneme +intersection_of: BFO:0000066 GO:0005930 ! occurs in axoneme +relationship: BFO:0000066 GO:0005930 ! occurs in axoneme [Term] id: GO:0060405 @@ -95746,8 +95217,8 @@ def: "Any process that modulates the rate, frequency or extent of penile erectio is_a: GO:0051239 ! regulation of multicellular organismal process is_a: GO:2000241 ! regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0043084 ! penile erection -relationship: regulates GO:0043084 ! penile erection +intersection_of: RO:0002211 GO:0043084 ! regulates (processual) penile erection +relationship: RO:0002211 GO:0043084 ! regulates (processual) penile erection [Term] id: GO:0060406 @@ -95758,8 +95229,8 @@ is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:0060405 ! regulation of penile erection is_a: GO:2000243 ! positive regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0043084 ! penile erection -relationship: positively_regulates GO:0043084 ! penile erection +intersection_of: RO:0002213 GO:0043084 ! positively regulates penile erection +relationship: RO:0002213 GO:0043084 ! positively regulates penile erection [Term] id: GO:0060407 @@ -95770,8 +95241,8 @@ is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:0060405 ! regulation of penile erection is_a: GO:2000242 ! negative regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0043084 ! penile erection -relationship: negatively_regulates GO:0043084 ! penile erection +intersection_of: RO:0002212 GO:0043084 ! negatively regulates penile erection +relationship: RO:0002212 GO:0043084 ! negatively regulates penile erection [Term] id: GO:0060408 @@ -95781,8 +95252,8 @@ def: "Any process that modulates the rate, frequency or extent of the chemical r is_a: GO:0033238 ! regulation of amine metabolic process is_a: GO:0080090 ! regulation of primary metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008291 ! acetylcholine metabolic process -relationship: regulates GO:0008291 ! acetylcholine metabolic process +intersection_of: RO:0002211 GO:0008291 ! regulates (processual) acetylcholine metabolic process +relationship: RO:0002211 GO:0008291 ! regulates (processual) acetylcholine metabolic process [Term] id: GO:0060409 @@ -95792,8 +95263,8 @@ def: "Any process that increases the rate, frequency or extent of the chemical r is_a: GO:0033240 ! positive regulation of amine metabolic process is_a: GO:0060408 ! regulation of acetylcholine metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008291 ! acetylcholine metabolic process -relationship: positively_regulates GO:0008291 ! acetylcholine metabolic process +intersection_of: RO:0002213 GO:0008291 ! positively regulates acetylcholine metabolic process +relationship: RO:0002213 GO:0008291 ! positively regulates acetylcholine metabolic process [Term] id: GO:0060410 @@ -95803,8 +95274,8 @@ def: "Any process that decreases the rate, frequency or extent of the chemical r is_a: GO:0033239 ! negative regulation of amine metabolic process is_a: GO:0060408 ! regulation of acetylcholine metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008291 ! acetylcholine metabolic process -relationship: negatively_regulates GO:0008291 ! acetylcholine metabolic process +intersection_of: RO:0002212 GO:0008291 ! negatively regulates acetylcholine metabolic process +relationship: RO:0002212 GO:0008291 ! negatively regulates acetylcholine metabolic process [Term] id: GO:0060411 @@ -95815,10 +95286,10 @@ def: "The process in which the anatomical structure of a cardiac septum is gener synonym: "heart septum morphogenesis" EXACT [] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002099 ! cardiac septum +intersection_of: RO:0002298 UBERON:0002099 ! results in morphogenesis of cardiac septum relationship: part_of GO:0003206 ! cardiac chamber morphogenesis relationship: part_of GO:0003279 ! cardiac septum development -relationship: results_in_morphogenesis_of UBERON:0002099 ! cardiac septum +relationship: RO:0002298 UBERON:0002099 ! results in morphogenesis of cardiac septum [Term] id: GO:0060412 @@ -95828,9 +95299,9 @@ def: "The developmental process in which a ventricular septum is generated and o synonym: "interventricular septum morphogenesis" EXACT [GOC:dph] is_a: GO:0060411 ! cardiac septum morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002094 ! interventricular septum +intersection_of: RO:0002298 UBERON:0002094 ! results in morphogenesis of interventricular septum relationship: part_of GO:0003281 ! ventricular septum development -relationship: results_in_morphogenesis_of UBERON:0002094 ! interventricular septum +relationship: RO:0002298 UBERON:0002094 ! results in morphogenesis of interventricular septum [Term] id: GO:0060413 @@ -95841,10 +95312,10 @@ def: "The developmental process in which atrial septum is generated and organize synonym: "interatrial septum morphogenesis" EXACT [GOC:dph] is_a: GO:0060411 ! cardiac septum morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002085 ! interatrial septum +intersection_of: RO:0002298 UBERON:0002085 ! results in morphogenesis of interatrial septum relationship: part_of GO:0003209 ! cardiac atrium morphogenesis relationship: part_of GO:0003283 ! atrial septum development -relationship: results_in_morphogenesis_of UBERON:0002085 ! interatrial septum +relationship: RO:0002298 UBERON:0002085 ! results in morphogenesis of interatrial septum [Term] id: GO:0060414 @@ -95853,10 +95324,10 @@ namespace: biological_process def: "The process in which the structure of the smooth muscle tissue surrounding the aorta is generated and organized. An aorta is an artery that carries blood from the heart to other parts of the body." [GOC:bf, GOC:dgh, GOC:dph, Wikipedia:Aorta] is_a: GO:0060415 ! muscle tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004178 ! aorta smooth muscle tissue +intersection_of: RO:0002298 UBERON:0004178 ! results in morphogenesis of aorta smooth muscle tissue relationship: part_of GO:0035909 ! aorta morphogenesis relationship: part_of GO:0048745 ! smooth muscle tissue development -relationship: results_in_morphogenesis_of UBERON:0004178 ! aorta smooth muscle tissue +relationship: RO:0002298 UBERON:0004178 ! results in morphogenesis of aorta smooth muscle tissue [Term] id: GO:0060415 @@ -95865,19 +95336,19 @@ namespace: biological_process def: "The process in which the anatomical structures of muscle tissue are generated and organized. Muscle tissue consists of a set of cells that are part of an organ and carry out a contractive function." [GOC:dph] is_a: GO:0048729 ! tissue morphogenesis intersection_of: GO:0048729 ! tissue morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002385 ! muscle tissue +intersection_of: RO:0002298 UBERON:0002385 ! results in morphogenesis of muscle tissue relationship: part_of GO:0048644 ! muscle organ morphogenesis -relationship: results_in_morphogenesis_of UBERON:0002385 ! muscle tissue +relationship: RO:0002298 UBERON:0002385 ! results in morphogenesis of muscle tissue [Term] id: GO:0060417 name: yolk namespace: cellular_component def: "The cytoplasmic part that serves as a nutrient reserve or energy source for the developing embryo." [GOC:dph, GOC:tb, PMID:18046696] -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: part_of GO:0005737 ! cytoplasm +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa [Term] id: GO:0060419 @@ -95886,9 +95357,9 @@ namespace: biological_process def: "The increase in size or mass of the heart." [GOC:dph, GOC:tb] is_a: GO:0035265 ! organ growth intersection_of: GO:0048589 ! developmental growth -intersection_of: results_in_growth_of UBERON:0000948 ! heart +intersection_of: RO:0002343 UBERON:0000948 ! results in growth of heart relationship: part_of GO:0007507 ! heart development -relationship: results_in_growth_of UBERON:0000948 ! heart +relationship: RO:0002343 UBERON:0000948 ! results in growth of heart [Term] id: GO:0060420 @@ -95898,9 +95369,9 @@ def: "Any process that modulates the rate or extent of heart growth. Heart growt is_a: GO:0046620 ! regulation of organ growth is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060419 ! heart growth -relationship: regulates GO:0007275 ! multicellular organism development -relationship: regulates GO:0060419 ! heart growth +intersection_of: RO:0002211 GO:0060419 ! regulates (processual) heart growth +relationship: RO:0002211 GO:0007275 ! regulates (processual) multicellular organism development +relationship: RO:0002211 GO:0060419 ! regulates (processual) heart growth [Term] id: GO:0060421 @@ -95910,8 +95381,8 @@ def: "Any process that increases the rate or extent of heart growth. Heart growt is_a: GO:0046622 ! positive regulation of organ growth is_a: GO:0060420 ! regulation of heart growth intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060419 ! heart growth -relationship: positively_regulates GO:0060419 ! heart growth +intersection_of: RO:0002213 GO:0060419 ! positively regulates heart growth +relationship: RO:0002213 GO:0060419 ! positively regulates heart growth [Term] id: GO:0060425 @@ -95920,9 +95391,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the lung are generated and organized." [GOC:dph] is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002048 ! lung +intersection_of: RO:0002298 UBERON:0002048 ! results in morphogenesis of lung relationship: part_of GO:0030324 ! lung development -relationship: results_in_morphogenesis_of UBERON:0002048 ! lung +relationship: RO:0002298 UBERON:0002048 ! results in morphogenesis of lung [Term] id: GO:0060426 @@ -95932,9 +95403,9 @@ def: "The biological process whose specific outcome is the progression of a lung synonym: "pulmonary vasculature development" EXACT [GOC:dph, GOC:mtg_lung] is_a: GO:0001944 ! vasculature development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000102 ! lung vasculature +intersection_of: RO:0002296 UBERON:0000102 ! results in development of lung vasculature relationship: part_of GO:0030324 ! lung development -relationship: results_in_development_of UBERON:0000102 ! lung vasculature +relationship: RO:0002296 UBERON:0000102 ! results in development of lung vasculature [Term] id: GO:0060427 @@ -95944,9 +95415,9 @@ def: "The biological process whose specific outcome is the progression of lung c synonym: "pulmonary connective tissue development" EXACT [] is_a: GO:0061448 ! connective tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000114 ! lung connective tissue +intersection_of: RO:0002296 UBERON:0000114 ! results in development of lung connective tissue relationship: part_of GO:0030324 ! lung development -relationship: results_in_development_of UBERON:0000114 ! lung connective tissue +relationship: RO:0002296 UBERON:0000114 ! results in development of lung connective tissue [Term] id: GO:0060428 @@ -95956,9 +95427,9 @@ def: "The biological process whose specific outcome is the progression of the lu synonym: "pulmonary epithelium development" EXACT [GOC:dph, GOC:mtg_lung] is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000115 ! lung epithelium +intersection_of: RO:0002296 UBERON:0000115 ! results in development of lung epithelium relationship: part_of GO:0030324 ! lung development -relationship: results_in_development_of UBERON:0000115 ! lung epithelium +relationship: RO:0002296 UBERON:0000115 ! results in development of lung epithelium [Term] id: GO:0060429 @@ -95968,8 +95439,8 @@ def: "The process whose specific outcome is the progression of an epithelium ove subset: goslim_drosophila is_a: GO:0009888 ! tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000483 ! epithelium -relationship: results_in_development_of UBERON:0000483 ! epithelium +intersection_of: RO:0002296 UBERON:0000483 ! results in development of epithelium +relationship: RO:0002296 UBERON:0000483 ! results in development of epithelium [Term] id: GO:0060430 @@ -95979,9 +95450,9 @@ def: "The biological process whose specific outcome is the progression of a lung synonym: "lung saccular development" BROAD [GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000116 ! lung saccule +intersection_of: RO:0002296 UBERON:0000116 ! results in development of lung saccule relationship: part_of GO:0048286 ! lung alveolus development -relationship: results_in_development_of UBERON:0000116 ! lung saccule +relationship: RO:0002296 UBERON:0000116 ! results in development of lung saccule [Term] id: GO:0060431 @@ -95994,8 +95465,8 @@ is_a: GO:0048645 ! animal organ formation is_a: GO:0060441 ! epithelial tube branching involved in lung morphogenesis is_a: GO:0060572 ! morphogenesis of an epithelial bud intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002048 ! lung -relationship: results_in_formation_of_anatomical_entity UBERON:0002048 ! lung +intersection_of: RO:0002297 UBERON:0002048 ! results in formation of anatomical entity lung +relationship: RO:0002297 UBERON:0002048 ! results in formation of anatomical entity lung [Term] id: GO:0060433 @@ -96004,9 +95475,9 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of a bronchus from an initial condition to its mature state. This process begins with the formation of the bronchus and ends with the mature structure. The bronchus is the portion of the airway that connects to the lungs." [GOC:dph] is_a: GO:0030323 ! respiratory tube development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002185 ! bronchus +intersection_of: RO:0002296 UBERON:0002185 ! results in development of bronchus relationship: part_of GO:0060541 ! respiratory system development -relationship: results_in_development_of UBERON:0002185 ! bronchus +relationship: RO:0002296 UBERON:0002185 ! results in development of bronchus [Term] id: GO:0060434 @@ -96016,9 +95487,9 @@ def: "The process in which the bronchus is generated and organized. The bronchus is_a: GO:0009887 ! animal organ morphogenesis is_a: GO:0035239 ! tube morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002185 ! bronchus +intersection_of: RO:0002298 UBERON:0002185 ! results in morphogenesis of bronchus relationship: part_of GO:0060433 ! bronchus development -relationship: results_in_morphogenesis_of UBERON:0002185 ! bronchus +relationship: RO:0002298 UBERON:0002185 ! results in morphogenesis of bronchus [Term] id: GO:0060435 @@ -96027,9 +95498,9 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of a bronchiole from an initial condition to its mature state. This process begins with the formation of the bronchiole and ends with the mature structure. A bronchiole is the first airway branch that no longer contains cartilage; it is a branch of the bronchi." [GOC:dph, GOC:mtg_lung] is_a: GO:0030323 ! respiratory tube development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002186 ! bronchiole +intersection_of: RO:0002296 UBERON:0002186 ! results in development of bronchiole relationship: part_of GO:0030324 ! lung development -relationship: results_in_development_of UBERON:0002186 ! bronchiole +relationship: RO:0002296 UBERON:0002186 ! results in development of bronchiole [Term] id: GO:0060436 @@ -96038,9 +95509,9 @@ namespace: biological_process def: "The process in which a bronchiole is generated and organized. A bronchiole is the first airway branch that no longer contains cartilage; it is a branch of the bronchi." [GOC:dph] is_a: GO:0035239 ! tube morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002186 ! bronchiole +intersection_of: RO:0002298 UBERON:0002186 ! results in morphogenesis of bronchiole relationship: part_of GO:0060435 ! bronchiole development -relationship: results_in_morphogenesis_of UBERON:0002186 ! bronchiole +relationship: RO:0002298 UBERON:0002186 ! results in morphogenesis of bronchiole [Term] id: GO:0060437 @@ -96049,9 +95520,9 @@ namespace: biological_process def: "The increase in size or mass of a lung. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the esophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax." [GOC:dph] is_a: GO:0035265 ! organ growth intersection_of: GO:0048589 ! developmental growth -intersection_of: results_in_growth_of UBERON:0002048 ! lung +intersection_of: RO:0002343 UBERON:0002048 ! results in growth of lung relationship: part_of GO:0030324 ! lung development -relationship: results_in_growth_of UBERON:0002048 ! lung +relationship: RO:0002343 UBERON:0002048 ! results in growth of lung [Term] id: GO:0060438 @@ -96060,9 +95531,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a trachea over time, from its formation to the mature structure. The trachea is the portion of the airway that attaches to the bronchi as it branches." [GOC:dph] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001005 ! respiratory airway +intersection_of: RO:0002296 UBERON:0001005 ! results in development of respiratory airway relationship: part_of GO:0060541 ! respiratory system development -relationship: results_in_development_of UBERON:0001005 ! respiratory airway +relationship: RO:0002296 UBERON:0001005 ! results in development of respiratory airway [Term] id: GO:0060439 @@ -96071,9 +95542,9 @@ namespace: biological_process def: "The process in which a trachea is generated and organized. The trachea is the portion of the airway that attaches to the bronchi as it branches." [GOC:dph] is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001005 ! respiratory airway +intersection_of: RO:0002298 UBERON:0001005 ! results in morphogenesis of respiratory airway relationship: part_of GO:0060438 ! trachea development -relationship: results_in_morphogenesis_of UBERON:0001005 ! respiratory airway +relationship: RO:0002298 UBERON:0001005 ! results in morphogenesis of respiratory airway [Term] id: GO:0060440 @@ -96082,9 +95553,9 @@ namespace: biological_process def: "The process pertaining to the initial formation of a trachea from unspecified parts. The process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the trachea is recognizable. The trachea is the portion of the airway that attaches to the bronchi as it branches." [GOC:dph] is_a: GO:0048645 ! animal organ formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001005 ! respiratory airway +intersection_of: RO:0002297 UBERON:0001005 ! results in formation of anatomical entity respiratory airway relationship: part_of GO:0060439 ! trachea morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001005 ! respiratory airway +relationship: RO:0002297 UBERON:0001005 ! results in formation of anatomical entity respiratory airway [Term] id: GO:0060441 @@ -96117,9 +95588,9 @@ namespace: biological_process def: "The process in which anatomical structures of the mammary gland are generated and organized. Morphogenesis refers to the creation of shape. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk." [GOC:dph] is_a: GO:0022612 ! gland morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001911 ! mammary gland +intersection_of: RO:0002298 UBERON:0001911 ! results in morphogenesis of mammary gland relationship: part_of GO:0030879 ! mammary gland development -relationship: results_in_morphogenesis_of UBERON:0001911 ! mammary gland +relationship: RO:0002298 UBERON:0001911 ! results in morphogenesis of mammary gland [Term] id: GO:0060444 @@ -96161,8 +95632,8 @@ is_a: GO:0043134 ! regulation of hindgut contraction is_a: GO:0045987 ! positive regulation of smooth muscle contraction is_a: GO:0060456 ! positive regulation of digestive system process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0043133 ! hindgut contraction -relationship: positively_regulates GO:0043133 ! hindgut contraction +intersection_of: RO:0002213 GO:0043133 ! positively regulates hindgut contraction +relationship: RO:0002213 GO:0043133 ! positively regulates hindgut contraction [Term] id: GO:0060451 @@ -96173,8 +95644,8 @@ is_a: GO:0043134 ! regulation of hindgut contraction is_a: GO:0045986 ! negative regulation of smooth muscle contraction is_a: GO:0060457 ! negative regulation of digestive system process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0043133 ! hindgut contraction -relationship: negatively_regulates GO:0043133 ! hindgut contraction +intersection_of: RO:0002212 GO:0043133 ! negatively regulates hindgut contraction +relationship: RO:0002212 GO:0043133 ! negatively regulates hindgut contraction [Term] id: GO:0060452 @@ -96185,8 +95656,8 @@ is_a: GO:0045823 ! positive regulation of heart contraction is_a: GO:0045989 ! positive regulation of striated muscle contraction is_a: GO:0055117 ! regulation of cardiac muscle contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060048 ! cardiac muscle contraction -relationship: positively_regulates GO:0060048 ! cardiac muscle contraction +intersection_of: RO:0002213 GO:0060048 ! positively regulates cardiac muscle contraction +relationship: RO:0002213 GO:0060048 ! positively regulates cardiac muscle contraction [Term] id: GO:0060453 @@ -96196,8 +95667,8 @@ def: "Any process that modulates the rate frequency or extent of gastric secreti is_a: GO:0044058 ! regulation of digestive system process is_a: GO:0051046 ! regulation of secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001696 ! gastric acid secretion -relationship: regulates GO:0001696 ! gastric acid secretion +intersection_of: RO:0002211 GO:0001696 ! regulates (processual) gastric acid secretion +relationship: RO:0002211 GO:0001696 ! regulates (processual) gastric acid secretion [Term] id: GO:0060454 @@ -96208,8 +95679,8 @@ is_a: GO:0051047 ! positive regulation of secretion is_a: GO:0060453 ! regulation of gastric acid secretion is_a: GO:0060456 ! positive regulation of digestive system process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001696 ! gastric acid secretion -relationship: positively_regulates GO:0001696 ! gastric acid secretion +intersection_of: RO:0002213 GO:0001696 ! positively regulates gastric acid secretion +relationship: RO:0002213 GO:0001696 ! positively regulates gastric acid secretion [Term] id: GO:0060455 @@ -96220,8 +95691,8 @@ is_a: GO:0051048 ! negative regulation of secretion is_a: GO:0060453 ! regulation of gastric acid secretion is_a: GO:0060457 ! negative regulation of digestive system process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001696 ! gastric acid secretion -relationship: negatively_regulates GO:0001696 ! gastric acid secretion +intersection_of: RO:0002212 GO:0001696 ! negatively regulates gastric acid secretion +relationship: RO:0002212 GO:0001696 ! negatively regulates gastric acid secretion [Term] id: GO:0060456 @@ -96231,8 +95702,8 @@ def: "Any process that increases the frequency, rate or extent of a digestive sy is_a: GO:0044058 ! regulation of digestive system process is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0022600 ! digestive system process -relationship: positively_regulates GO:0022600 ! digestive system process +intersection_of: RO:0002213 GO:0022600 ! positively regulates digestive system process +relationship: RO:0002213 GO:0022600 ! positively regulates digestive system process [Term] id: GO:0060457 @@ -96242,8 +95713,8 @@ def: "Any process that decreases the frequency, rate or extent of a digestive sy is_a: GO:0044058 ! regulation of digestive system process is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0022600 ! digestive system process -relationship: negatively_regulates GO:0022600 ! digestive system process +intersection_of: RO:0002212 GO:0022600 ! negatively regulates digestive system process +relationship: RO:0002212 GO:0022600 ! negatively regulates digestive system process [Term] id: GO:0060458 @@ -96253,8 +95724,8 @@ def: "The biological process whose specific outcome is the progression of a righ synonym: "right pulmonary development" EXACT [GOC:dph, GOC:mtg_lung] is_a: GO:0030324 ! lung development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002167 ! right lung -relationship: results_in_development_of UBERON:0002167 ! right lung +intersection_of: RO:0002296 UBERON:0002167 ! results in development of right lung +relationship: RO:0002296 UBERON:0002167 ! results in development of right lung [Term] id: GO:0060459 @@ -96264,8 +95735,8 @@ def: "The biological process whose specific outcome is the progression of a left synonym: "left pulmonary development" EXACT [GOC:dph] is_a: GO:0030324 ! lung development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002168 ! left lung -relationship: results_in_development_of UBERON:0002168 ! left lung +intersection_of: RO:0002296 UBERON:0002168 ! results in development of left lung +relationship: RO:0002296 UBERON:0002168 ! results in development of left lung [Term] id: GO:0060460 @@ -96274,9 +95745,9 @@ namespace: biological_process def: "The process in which anatomical structures of the left lung are generated and organized." [GOC:dph] is_a: GO:0060425 ! lung morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002168 ! left lung +intersection_of: RO:0002298 UBERON:0002168 ! results in morphogenesis of left lung relationship: part_of GO:0060459 ! left lung development -relationship: results_in_morphogenesis_of UBERON:0002168 ! left lung +relationship: RO:0002298 UBERON:0002168 ! results in morphogenesis of left lung [Term] id: GO:0060461 @@ -96285,9 +95756,9 @@ namespace: biological_process def: "The process in which anatomical structures of the right lung are generated and organized." [GOC:dph, GOC:mtg_lung] is_a: GO:0060425 ! lung morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002167 ! right lung +intersection_of: RO:0002298 UBERON:0002167 ! results in morphogenesis of right lung relationship: part_of GO:0060458 ! right lung development -relationship: results_in_morphogenesis_of UBERON:0002167 ! right lung +relationship: RO:0002298 UBERON:0002167 ! results in morphogenesis of right lung [Term] id: GO:0060462 @@ -96296,9 +95767,9 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of a lung lobe from an initial condition to its mature state. This process begins with the formation of a lung lobe by branching morphogenesis and ends with the mature structure. A lung lobe is one of the rounded projections that compose the lung." [GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000101 ! lobe of lung +intersection_of: RO:0002296 UBERON:0000101 ! results in development of lobe of lung relationship: part_of GO:0030324 ! lung development -relationship: results_in_development_of UBERON:0000101 ! lobe of lung +relationship: RO:0002296 UBERON:0000101 ! results in development of lobe of lung [Term] id: GO:0060463 @@ -96307,10 +95778,10 @@ namespace: biological_process def: "The process in which the anatomical structures of a lung lobe are generated and organized. A lung lobe is a projection that extends from the lung." [GOC:dph] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000101 ! lobe of lung +intersection_of: RO:0002298 UBERON:0000101 ! results in morphogenesis of lobe of lung relationship: part_of GO:0060425 ! lung morphogenesis relationship: part_of GO:0060462 ! lung lobe development -relationship: results_in_morphogenesis_of UBERON:0000101 ! lobe of lung +relationship: RO:0002298 UBERON:0000101 ! results in morphogenesis of lobe of lung [Term] id: GO:0060464 @@ -96319,9 +95790,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a lung lobe from unspecified parts. This process begins with the specific processes that contribute to the appearance of the lobe and ends when the structural rudiment is recognizable. A lung lobe is a projection that extends from the lung." [GOC:dph] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000101 ! lobe of lung +intersection_of: RO:0002297 UBERON:0000101 ! results in formation of anatomical entity lobe of lung relationship: part_of GO:0060463 ! lung lobe morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0000101 ! lobe of lung +relationship: RO:0002297 UBERON:0000101 ! results in formation of anatomical entity lobe of lung [Term] id: GO:0060465 @@ -96331,9 +95802,9 @@ def: "The biological process whose specific outcome is the progression of a phar synonym: "pharyngeal development" RELATED [] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006562 ! pharynx +intersection_of: RO:0002296 UBERON:0006562 ! results in development of pharynx relationship: part_of GO:0048565 ! digestive tract development -relationship: results_in_development_of UBERON:0006562 ! pharynx +relationship: RO:0002296 UBERON:0006562 ! results in development of pharynx [Term] id: GO:0060467 @@ -96343,8 +95814,8 @@ def: "Any process that decreases the rate, frequency or extent of fertilization. is_a: GO:0080154 ! regulation of fertilization is_a: GO:2000242 ! negative regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009566 ! fertilization -relationship: negatively_regulates GO:0009566 ! fertilization +intersection_of: RO:0002212 GO:0009566 ! negatively regulates fertilization +relationship: RO:0002212 GO:0009566 ! negatively regulates fertilization [Term] id: GO:0060468 @@ -96369,7 +95840,7 @@ is_a: GO:1902093 ! positive regulation of flagellated sperm motility intersection_of: GO:1902093 ! positive regulation of flagellated sperm motility intersection_of: part_of GO:0048240 ! sperm capacitation relationship: part_of GO:0048240 ! sperm capacitation -relationship: positively_regulates GO:0030317 ! flagellated sperm motility +relationship: RO:0002213 GO:0030317 ! positively regulates flagellated sperm motility [Term] id: GO:0060479 @@ -96388,9 +95859,9 @@ def: "The process in which a relatively unspecialized cell acquires specialized synonym: "pulmonary goblet cell differentiation" EXACT [] is_a: GO:0060487 ! lung epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000143 ! lung goblet cell +intersection_of: RO:0002315 CL:1000143 ! results in acquisition of features of lung goblet cell relationship: part_of GO:0060481 ! lobar bronchus epithelium development -relationship: results_in_acquisition_of_features_of CL:1000143 ! lung goblet cell +relationship: RO:0002315 CL:1000143 ! results in acquisition of features of lung goblet cell [Term] id: GO:0060481 @@ -96399,9 +95870,9 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of a lobar bronchus epithelium from an initial condition to its mature state. This process begins with the formation of the lobar bronchus epithelium and ends with the mature structure. The lobar bronchus epithelium is the tissue made up of epithelial cells that lines the inside of the lobar bronchus." [GOC:dph, GOC:mtg_lung] is_a: GO:0060428 ! lung epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002339 ! epithelium of lobar bronchus +intersection_of: RO:0002296 UBERON:0002339 ! results in development of epithelium of lobar bronchus relationship: part_of GO:0060482 ! lobar bronchus development -relationship: results_in_development_of UBERON:0002339 ! epithelium of lobar bronchus +relationship: RO:0002296 UBERON:0002339 ! results in development of epithelium of lobar bronchus [Term] id: GO:0060482 @@ -96410,8 +95881,8 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of a lobar bronchus from an initial condition to its mature state. This process begins with the formation of the lobar bronchus and ends with the mature structure. The lobar bronchus is the major airway within the respiratory tree that starts by division of the principal bronchi on both sides and ends at the point of its own subdivision into tertiary or segmental bronchi." [GOC:dph, GOC:mtg_lung] is_a: GO:0060433 ! bronchus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002183 ! lobar bronchus -relationship: results_in_development_of UBERON:0002183 ! lobar bronchus +intersection_of: RO:0002296 UBERON:0002183 ! results in development of lobar bronchus +relationship: RO:0002296 UBERON:0002183 ! results in development of lobar bronchus [Term] id: GO:0060483 @@ -96420,9 +95891,9 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of a lobar bronchus mesenchyme from an initial condition to its mature state. This process begins with the formation of the lobar bronchus mesenchyme and ends with the mature structure. The lobar bronchus mesenchyme is the mass of tissue composed of mesenchymal cells in the lobar bronchus." [GOC:dph, GOC:mtg_lung] is_a: GO:0060484 ! lung-associated mesenchyme development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004884 ! lobar bronchus mesenchyme +intersection_of: RO:0002296 UBERON:0004884 ! results in development of lobar bronchus mesenchyme relationship: part_of GO:0060482 ! lobar bronchus development -relationship: results_in_development_of UBERON:0004884 ! lobar bronchus mesenchyme +relationship: RO:0002296 UBERON:0004884 ! results in development of lobar bronchus mesenchyme [Term] id: GO:0060484 @@ -96442,9 +95913,9 @@ def: "The process whose specific outcome is the progression of a mesenchymal tis synonym: "mesenchymal development" EXACT [GOC:dph] is_a: GO:0009888 ! tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003104 ! mesenchyme +intersection_of: RO:0002296 UBERON:0003104 ! results in development of mesenchyme relationship: part_of GO:0048513 ! animal organ development -relationship: results_in_development_of UBERON:0003104 ! mesenchyme +relationship: RO:0002296 UBERON:0003104 ! results in development of mesenchyme [Term] id: GO:0060486 @@ -96454,8 +95925,8 @@ def: "The process in which a relatively unspecialized cell acquires specialized synonym: "Clara cell differentiation" EXACT [PMID:28144783] is_a: GO:0060487 ! lung epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000158 ! club cell -relationship: results_in_acquisition_of_features_of CL:0000158 ! club cell +intersection_of: RO:0002315 CL:0000158 ! results in acquisition of features of club cell +relationship: RO:0002315 CL:0000158 ! results in acquisition of features of club cell [Term] id: GO:0060487 @@ -96466,9 +95937,9 @@ synonym: "pulmonary epithelial cell differentiation" RELATED [GOC:dph] is_a: GO:0030855 ! epithelial cell differentiation is_a: GO:0060479 ! lung cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000082 ! epithelial cell of lung +intersection_of: RO:0002315 CL:0000082 ! results in acquisition of features of epithelial cell of lung relationship: part_of GO:0060428 ! lung epithelium development -relationship: results_in_acquisition_of_features_of CL:0000082 ! epithelial cell of lung +relationship: RO:0002315 CL:0000082 ! results in acquisition of features of epithelial cell of lung [Term] id: GO:0060490 @@ -96489,9 +95960,9 @@ synonym: "regulation of cell projection formation" RELATED [GOC:dph, GOC:tb] is_a: GO:0031344 ! regulation of cell projection organization is_a: GO:0044087 ! regulation of cellular component biogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030031 ! cell projection assembly -relationship: regulates GO:0030031 ! cell projection assembly -relationship: regulates GO:0044085 ! cellular component biogenesis +intersection_of: RO:0002211 GO:0030031 ! regulates (processual) cell projection assembly +relationship: RO:0002211 GO:0030031 ! regulates (processual) cell projection assembly +relationship: RO:0002211 GO:0044085 ! regulates (processual) cellular component biogenesis [Term] id: GO:0060495 @@ -96524,10 +95995,10 @@ def: "Any process that mediates the transfer of information between a mesenchyma synonym: "mesenchymal-endodermal cell signalling" EXACT [GOC:mah] is_a: GO:0007267 ! cell-cell signaling intersection_of: GO:0007267 ! cell-cell signaling -intersection_of: has_end_location CL:0000223 ! endodermal cell -intersection_of: has_start_location CL:0008019 ! mesenchymal cell -relationship: has_end_location CL:0000223 ! endodermal cell -relationship: has_start_location CL:0008019 ! mesenchymal cell +intersection_of: RO:0002231 CL:0008019 ! has start location mesenchymal cell +intersection_of: RO:0002232 CL:0000223 ! has end location endodermal cell +relationship: RO:0002231 CL:0008019 ! has start location mesenchymal cell +relationship: RO:0002232 CL:0000223 ! has end location endodermal cell [Term] id: GO:0060501 @@ -96537,8 +96008,8 @@ def: "Any process that increases the rate or frequency of epithelial cell prolif is_a: GO:0050679 ! positive regulation of epithelial cell proliferation is_a: GO:2000794 ! regulation of epithelial cell proliferation involved in lung morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060502 ! epithelial cell proliferation involved in lung morphogenesis -relationship: positively_regulates GO:0060502 ! epithelial cell proliferation involved in lung morphogenesis +intersection_of: RO:0002213 GO:0060502 ! positively regulates epithelial cell proliferation involved in lung morphogenesis +relationship: RO:0002213 GO:0060502 ! positively regulates epithelial cell proliferation involved in lung morphogenesis [Term] id: GO:0060502 @@ -96561,8 +96032,8 @@ synonym: "small alveolar cell differentiation" RELATED [GOC:dph, ISBN:0721662544 synonym: "squamous alveolar cell differentiation" RELATED [GOC:dph, ISBN:0721662544] is_a: GO:0060487 ! lung epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002062 ! pulmonary alveolar type 1 cell -relationship: results_in_acquisition_of_features_of CL:0002062 ! pulmonary alveolar type 1 cell +intersection_of: RO:0002315 CL:0002062 ! results in acquisition of features of pulmonary alveolar type 1 cell +relationship: RO:0002315 CL:0002062 ! results in acquisition of features of pulmonary alveolar type 1 cell [Term] id: GO:0060510 @@ -96574,8 +96045,8 @@ synonym: "great alveolar cell differentiation" EXACT [GOC:dph, ISBN:0721662544] synonym: "large alveolar cell differentiation" RELATED [GOC:dph, ISBN:0721662544] is_a: GO:0061140 ! lung secretory cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002063 ! pulmonary alveolar type 2 cell -relationship: results_in_acquisition_of_features_of CL:0002063 ! pulmonary alveolar type 2 cell +intersection_of: RO:0002315 CL:0002063 ! results in acquisition of features of pulmonary alveolar type 2 cell +relationship: RO:0002315 CL:0002063 ! results in acquisition of features of pulmonary alveolar type 2 cell [Term] id: GO:0060512 @@ -96585,9 +96056,9 @@ def: "The process in which the anatomical structures of a prostate gland are gen is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0022612 ! gland morphogenesis intersection_of: GO:0022612 ! gland morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002367 ! prostate gland +intersection_of: RO:0002298 UBERON:0002367 ! results in morphogenesis of prostate gland relationship: part_of GO:0030850 ! prostate gland development -relationship: results_in_morphogenesis_of UBERON:0002367 ! prostate gland +relationship: RO:0002298 UBERON:0002367 ! results in morphogenesis of prostate gland [Term] id: GO:0060513 @@ -96603,8 +96074,8 @@ is_a: GO:0060572 ! morphogenesis of an epithelial bud is_a: GO:0060601 ! lateral sprouting from an epithelium is_a: GO:0060740 ! prostate gland epithelium morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003820 ! prostate bud -relationship: results_in_formation_of_anatomical_entity UBERON:0003820 ! prostate bud +intersection_of: RO:0002297 UBERON:0003820 ! results in formation of anatomical entity prostate bud +relationship: RO:0002297 UBERON:0003820 ! results in formation of anatomical entity prostate bud [Term] id: GO:0060525 @@ -96614,9 +96085,9 @@ def: "The progression of a glandular acinus of the prostate gland over time, fro is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004179 ! prostate glandular acinus +intersection_of: RO:0002296 UBERON:0004179 ! results in development of prostate glandular acinus relationship: part_of GO:0030850 ! prostate gland development -relationship: results_in_development_of UBERON:0004179 ! prostate glandular acinus +relationship: RO:0002296 UBERON:0004179 ! results in development of prostate glandular acinus [Term] id: GO:0060526 @@ -96625,9 +96096,9 @@ namespace: biological_process def: "The process in which the prostate glandular acini are generated and organized. The glandular acini are the saclike structures of the gland." [GOC:dph] is_a: GO:0060740 ! prostate gland epithelium morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004179 ! prostate glandular acinus +intersection_of: RO:0002298 UBERON:0004179 ! results in morphogenesis of prostate glandular acinus relationship: part_of GO:0060525 ! prostate glandular acinus development -relationship: results_in_morphogenesis_of UBERON:0004179 ! prostate glandular acinus +relationship: RO:0002298 UBERON:0004179 ! results in morphogenesis of prostate glandular acinus [Term] id: GO:0060530 @@ -96659,9 +96130,9 @@ def: "The process whose specific outcome is the progression of lung cartilage ov synonym: "pulmonary cartilage development" EXACT [] is_a: GO:0051216 ! cartilage development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001956 ! cartilage of bronchus +intersection_of: RO:0002296 UBERON:0001956 ! results in development of cartilage of bronchus relationship: part_of GO:0060433 ! bronchus development -relationship: results_in_development_of UBERON:0001956 ! cartilage of bronchus +relationship: RO:0002296 UBERON:0001956 ! results in development of cartilage of bronchus created_by: dph creation_date: 2009-04-10T08:12:06Z @@ -96672,10 +96143,10 @@ namespace: biological_process def: "The process in which the bronchus cartilage is generated and organized. The bronchus cartilage is the connective tissue of the portion of the airway that connects to the lungs." [GOC:dph] is_a: GO:0060536 ! cartilage morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001956 ! cartilage of bronchus +intersection_of: RO:0002298 UBERON:0001956 ! results in morphogenesis of cartilage of bronchus relationship: part_of GO:0060434 ! bronchus morphogenesis relationship: part_of GO:0060532 ! bronchus cartilage development -relationship: results_in_morphogenesis_of UBERON:0001956 ! cartilage of bronchus +relationship: RO:0002298 UBERON:0001956 ! results in morphogenesis of cartilage of bronchus created_by: dph creation_date: 2009-04-10T08:47:41Z @@ -96686,9 +96157,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the tracheal cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate." [GOC:dph] is_a: GO:0051216 ! cartilage development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003604 ! trachea cartilage +intersection_of: RO:0002296 UBERON:0003604 ! results in development of trachea cartilage relationship: part_of GO:0060438 ! trachea development -relationship: results_in_development_of UBERON:0003604 ! trachea cartilage +relationship: RO:0002296 UBERON:0003604 ! results in development of trachea cartilage created_by: dph creation_date: 2009-04-10T09:00:18Z @@ -96699,10 +96170,10 @@ namespace: biological_process def: "The process in which the anatomical structures of cartilage in the trachea are generated and organized." [GOC:dph] is_a: GO:0060536 ! cartilage morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003604 ! trachea cartilage +intersection_of: RO:0002298 UBERON:0003604 ! results in morphogenesis of trachea cartilage relationship: part_of GO:0060439 ! trachea morphogenesis relationship: part_of GO:0060534 ! trachea cartilage development -relationship: results_in_morphogenesis_of UBERON:0003604 ! trachea cartilage +relationship: RO:0002298 UBERON:0003604 ! results in morphogenesis of trachea cartilage created_by: dph creation_date: 2009-04-10T09:07:48Z @@ -96714,9 +96185,9 @@ def: "The process in which the anatomical structures of cartilage are generated is_a: GO:0009887 ! animal organ morphogenesis is_a: GO:0048729 ! tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0007844 ! cartilage element +intersection_of: RO:0002298 UBERON:0007844 ! results in morphogenesis of cartilage element relationship: part_of GO:0051216 ! cartilage development -relationship: results_in_morphogenesis_of UBERON:0007844 ! cartilage element +relationship: RO:0002298 UBERON:0007844 ! results in morphogenesis of cartilage element created_by: dph creation_date: 2009-04-10T09:13:27Z @@ -96727,8 +96198,8 @@ namespace: biological_process def: "The progression of muscle tissue over time, from its initial formation to its mature state. Muscle tissue is a contractile tissue made up of actin and myosin fibers." [GOC:dph] is_a: GO:0009888 ! tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002385 ! muscle tissue -relationship: results_in_development_of UBERON:0002385 ! muscle tissue +intersection_of: RO:0002296 UBERON:0002385 ! results in development of muscle tissue +relationship: RO:0002296 UBERON:0002385 ! results in development of muscle tissue created_by: dph creation_date: 2009-04-10T08:05:37Z @@ -96739,8 +96210,8 @@ namespace: biological_process def: "The progression of a skeletal muscle organ over time from its initial formation to its mature state. A skeletal muscle organ includes the skeletal muscle tissue and its associated connective tissue." [GOC:dph] is_a: GO:0007517 ! muscle organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0014892 ! skeletal muscle organ, vertebrate -relationship: results_in_development_of UBERON:0014892 ! skeletal muscle organ, vertebrate +intersection_of: RO:0002296 UBERON:0014892 ! results in development of skeletal muscle organ, vertebrate +relationship: RO:0002296 UBERON:0014892 ! results in development of skeletal muscle organ, vertebrate created_by: dph creation_date: 2009-04-10T08:25:12Z @@ -96751,10 +96222,10 @@ namespace: biological_process def: "The progression of the diaphragm over time from its initial formation to the mature structure. The diaphragm is a skeletal muscle that is responsible for contraction and expansion of the lungs." [GOC:dph] is_a: GO:0060538 ! skeletal muscle organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001103 ! diaphragm +intersection_of: RO:0002296 UBERON:0001103 ! results in development of diaphragm relationship: never_in_taxon NCBITaxon:8782 ! Aves relationship: part_of GO:0060541 ! respiratory system development -relationship: results_in_development_of UBERON:0001103 ! diaphragm +relationship: RO:0002296 UBERON:0001103 ! results in development of diaphragm created_by: dph creation_date: 2009-04-10T08:44:56Z @@ -96765,10 +96236,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the diaphragm are generated and organized." [GOC:dph] is_a: GO:0048644 ! muscle organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001103 ! diaphragm +intersection_of: RO:0002298 UBERON:0001103 ! results in morphogenesis of diaphragm relationship: never_in_taxon NCBITaxon:8782 ! Aves relationship: part_of GO:0060539 ! diaphragm development -relationship: results_in_morphogenesis_of UBERON:0001103 ! diaphragm +relationship: RO:0002298 UBERON:0001103 ! results in morphogenesis of diaphragm created_by: dph creation_date: 2009-04-10T08:47:51Z @@ -96780,8 +96251,8 @@ def: "The progression of the respiratory system over time from its formation to subset: goslim_drosophila is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001004 ! respiratory system -relationship: results_in_development_of UBERON:0001004 ! respiratory system +intersection_of: RO:0002296 UBERON:0001004 ! results in development of respiratory system +relationship: RO:0002296 UBERON:0001004 ! results in development of respiratory system created_by: dph creation_date: 2009-04-10T08:55:42Z @@ -96821,8 +96292,8 @@ def: "The process in which the anatomical structures of a tube are generated and is_a: GO:0002009 ! morphogenesis of an epithelium is_a: GO:0035239 ! tube morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003914 ! epithelial tube -relationship: results_in_morphogenesis_of UBERON:0003914 ! epithelial tube +intersection_of: RO:0002298 UBERON:0003914 ! results in morphogenesis of epithelial tube +relationship: RO:0002298 UBERON:0003914 ! results in morphogenesis of epithelial tube created_by: dph creation_date: 2009-04-28T09:33:36Z @@ -96833,8 +96304,8 @@ namespace: biological_process def: "The process in which epiblast cells acquire specialized features of neuroepithelial cells." [GOC:dph, GOC:tb] is_a: GO:0002065 ! columnar/cuboidal epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000710 ! neurecto-epithelial cell -relationship: results_in_acquisition_of_features_of CL:0000710 ! neurecto-epithelial cell +intersection_of: RO:0002315 CL:0000710 ! results in acquisition of features of neurecto-epithelial cell +relationship: RO:0002315 CL:0000710 ! results in acquisition of features of neurecto-epithelial cell created_by: dph creation_date: 2009-04-29T01:50:05Z @@ -96847,8 +96318,8 @@ is_a: GO:0032350 ! regulation of hormone metabolic process is_a: GO:0034248 ! regulation of amide metabolic process is_a: GO:0070613 ! regulation of protein processing intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0016486 ! peptide hormone processing -relationship: regulates GO:0016486 ! peptide hormone processing +intersection_of: RO:0002211 GO:0016486 ! regulates (processual) peptide hormone processing +relationship: RO:0002211 GO:0016486 ! regulates (processual) peptide hormone processing created_by: dph creation_date: 2009-04-29T03:16:05Z @@ -96862,8 +96333,8 @@ is_a: GO:0032352 ! positive regulation of hormone metabolic process is_a: GO:0034250 ! positive regulation of amide metabolic process is_a: GO:0060568 ! regulation of peptide hormone processing intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0016486 ! peptide hormone processing -relationship: positively_regulates GO:0016486 ! peptide hormone processing +intersection_of: RO:0002213 GO:0016486 ! positively regulates peptide hormone processing +relationship: RO:0002213 GO:0016486 ! positively regulates peptide hormone processing created_by: dph creation_date: 2009-04-29T03:22:05Z @@ -96877,8 +96348,8 @@ is_a: GO:0032351 ! negative regulation of hormone metabolic process is_a: GO:0034249 ! negative regulation of amide metabolic process is_a: GO:0060568 ! regulation of peptide hormone processing intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0016486 ! peptide hormone processing -relationship: negatively_regulates GO:0016486 ! peptide hormone processing +intersection_of: RO:0002212 GO:0016486 ! negatively regulates peptide hormone processing +relationship: RO:0002212 GO:0016486 ! negatively regulates peptide hormone processing created_by: dph creation_date: 2009-04-29T03:24:55Z @@ -96891,8 +96362,8 @@ synonym: "epithelial folding" EXACT [GOC:dph] synonym: "folding of an epithelial sheet" RELATED [GOC:dph] is_a: GO:0002009 ! morphogenesis of an epithelium intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005157 ! epithelial fold -relationship: results_in_morphogenesis_of UBERON:0005157 ! epithelial fold +intersection_of: RO:0002298 UBERON:0005157 ! results in morphogenesis of epithelial fold +relationship: RO:0002298 UBERON:0005157 ! results in morphogenesis of epithelial fold created_by: dph creation_date: 2009-04-30T09:27:17Z @@ -96903,8 +96374,8 @@ namespace: biological_process def: "The morphogenetic process in which a bud forms from an epithelial sheet. A bud is a protrusion that forms form the sheet by localized folding." [GOC:dph] is_a: GO:0060571 ! morphogenesis of an epithelial fold intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005153 ! epithelial bud -relationship: results_in_morphogenesis_of UBERON:0005153 ! epithelial bud +intersection_of: RO:0002298 UBERON:0005153 ! results in morphogenesis of epithelial bud +relationship: RO:0002298 UBERON:0005153 ! results in morphogenesis of epithelial bud created_by: dph creation_date: 2009-04-30T09:38:35Z @@ -96915,9 +96386,9 @@ namespace: biological_process def: "The developmental process, independent of morphogenetic (shape) change, that is required for a columna/cuboidal epithelial cell of the intestine to attain its fully functional state. A columnar/cuboidal epithelial cell of the intestine mature as they migrate from the intestinal crypt to the villus." [GOC:dph, PMID:18824147] is_a: GO:0002069 ! columnar/cuboidal epithelial cell maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of CL:0002563 ! intestinal epithelial cell +intersection_of: RO:0002299 CL:0002563 ! results in maturation of intestinal epithelial cell relationship: part_of GO:0060576 ! intestinal epithelial cell development -relationship: results_in_maturation_of CL:0002563 ! intestinal epithelial cell +relationship: RO:0002299 CL:0002563 ! results in maturation of intestinal epithelial cell created_by: dph creation_date: 2009-05-06T08:10:41Z @@ -96928,9 +96399,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a columnar/cuboidal epithelial cell of the intestine." [GOC:dph] is_a: GO:0002065 ! columnar/cuboidal epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002563 ! intestinal epithelial cell +intersection_of: RO:0002315 CL:0002563 ! results in acquisition of features of intestinal epithelial cell relationship: part_of GO:0048565 ! digestive tract development -relationship: results_in_acquisition_of_features_of CL:0002563 ! intestinal epithelial cell +relationship: RO:0002315 CL:0002563 ! results in acquisition of features of intestinal epithelial cell created_by: dph creation_date: 2009-05-06T08:17:56Z @@ -96941,9 +96412,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a columnar/cuboidal epithelial cell of the intestine over time, from its formation to the mature structure." [GOC:dph] is_a: GO:0002066 ! columnar/cuboidal epithelial cell development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of CL:0002563 ! intestinal epithelial cell +intersection_of: RO:0002296 CL:0002563 ! results in development of intestinal epithelial cell relationship: part_of GO:0060575 ! intestinal epithelial cell differentiation -relationship: results_in_development_of CL:0002563 ! intestinal epithelial cell +relationship: RO:0002296 CL:0002563 ! results in development of intestinal epithelial cell created_by: dph creation_date: 2009-05-06T08:20:24Z @@ -96955,8 +96426,8 @@ def: "The process in which the anatomical structure of the pulmonary venous bloo synonym: "pulmonary venous blood vessel morphogenesis" RELATED [GOC:dph] is_a: GO:0048845 ! venous blood vessel morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002016 ! pulmonary vein -relationship: results_in_morphogenesis_of UBERON:0002016 ! pulmonary vein +intersection_of: RO:0002298 UBERON:0002016 ! results in morphogenesis of pulmonary vein +relationship: RO:0002298 UBERON:0002016 ! results in morphogenesis of pulmonary vein created_by: dph creation_date: 2009-05-06T08:44:04Z @@ -96967,8 +96438,8 @@ namespace: biological_process def: "The process in which the anatomical structure of superior vena cava generated and organized. The superior vena cava is a blood vessel that transports blood from the upper body to the heart." [GOC:dph] is_a: GO:0048845 ! venous blood vessel morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001585 ! anterior vena cava -relationship: results_in_morphogenesis_of UBERON:0001585 ! anterior vena cava +intersection_of: RO:0002298 UBERON:0001585 ! results in morphogenesis of anterior vena cava +relationship: RO:0002298 UBERON:0001585 ! results in morphogenesis of anterior vena cava created_by: dph creation_date: 2009-05-06T08:47:21Z @@ -96994,8 +96465,8 @@ is_a: GO:0055080 ! monoatomic cation homeostasis is_a: GO:0098771 ! inorganic ion homeostasis is_a: GO:0140962 ! multicellular organismal-level chemical homeostasis intersection_of: GO:0048871 ! multicellular organismal-level homeostasis -intersection_of: regulates_levels_of CHEBI:24875 ! iron cation -relationship: regulates_levels_of CHEBI:24875 ! iron cation +intersection_of: RO:0002332 CHEBI:24875 ! regulates levels of iron cation +relationship: RO:0002332 CHEBI:24875 ! regulates levels of iron cation property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24554" xsd:anyURI created_by: dph creation_date: 2009-05-08T02:18:21Z @@ -97008,9 +96479,9 @@ def: "The process in which a mesenchymal cell, acquires specialized structural a synonym: "chondrocyte progenitor cell differentiation" RELATED [GOC:dph] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000058 ! chondroblast +intersection_of: RO:0002315 CL:0000058 ! results in acquisition of features of chondroblast relationship: part_of GO:0051216 ! cartilage development -relationship: results_in_acquisition_of_features_of CL:0000058 ! chondroblast +relationship: RO:0002315 CL:0000058 ! results in acquisition of features of chondroblast created_by: dph creation_date: 2009-05-11T07:47:36Z @@ -97025,9 +96496,9 @@ synonym: "mammary placode formation" NARROW [GOC:dph] synonym: "mammary sprout formation" RELATED [GOC:dph] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001911 ! mammary gland +intersection_of: RO:0002297 UBERON:0001911 ! results in formation of anatomical entity mammary gland relationship: part_of GO:0060443 ! mammary gland morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001911 ! mammary gland +relationship: RO:0002297 UBERON:0001911 ! results in formation of anatomical entity mammary gland created_by: dph creation_date: 2009-05-13T08:47:52Z @@ -97038,9 +96509,9 @@ namespace: biological_process def: "The developmental process in which the mammary placode forms. The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper." [GOC:dph, PMID:16168142] is_a: GO:0060788 ! ectodermal placode formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005311 ! mammary placode +intersection_of: RO:0002297 UBERON:0005311 ! results in formation of anatomical entity mammary placode relationship: part_of GO:0060592 ! mammary gland formation -relationship: results_in_formation_of_anatomical_entity UBERON:0005311 ! mammary placode +relationship: RO:0002297 UBERON:0005311 ! results in formation of anatomical entity mammary placode created_by: dph creation_date: 2009-05-13T11:55:20Z @@ -97074,10 +96545,10 @@ namespace: biological_process def: "The process in which anatomical structures of the mammary ducts are generated and organized. Mammary ducts are epithelial tubes that transport milk." [GOC:dph, PMID:17120154] is_a: GO:0060562 ! epithelial tube morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001765 ! mammary duct +intersection_of: RO:0002298 UBERON:0001765 ! results in morphogenesis of mammary duct relationship: part_of GO:0060443 ! mammary gland morphogenesis relationship: part_of GO:0061180 ! mammary gland epithelium development -relationship: results_in_morphogenesis_of UBERON:0001765 ! mammary duct +relationship: RO:0002298 UBERON:0001765 ! results in morphogenesis of mammary duct created_by: dph creation_date: 2009-05-15T09:22:25Z @@ -97110,9 +96581,9 @@ namespace: biological_process def: "The progression of the mammary gland fat over time, from its formation to the mature structure. The mammary fat is an adipose structure in the gland that is invaded by the mammary ducts." [GOC:dph] is_a: GO:0060612 ! adipose tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004180 ! mammary gland fat +intersection_of: RO:0002296 UBERON:0004180 ! results in development of mammary gland fat relationship: part_of GO:0030879 ! mammary gland development -relationship: results_in_development_of UBERON:0004180 ! mammary gland fat +relationship: RO:0002296 UBERON:0004180 ! results in development of mammary gland fat created_by: dph creation_date: 2009-05-15T12:27:57Z @@ -97124,9 +96595,9 @@ def: "The process whose specific outcome is the progression of adipose tissue ov synonym: "adipogenesis" RELATED [GOC:mah, GOC:sl] is_a: GO:0061448 ! connective tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001013 ! adipose tissue +intersection_of: RO:0002296 UBERON:0001013 ! results in development of adipose tissue relationship: part_of GO:0048513 ! animal organ development -relationship: results_in_development_of UBERON:0001013 ! adipose tissue +relationship: RO:0002296 UBERON:0001013 ! results in development of adipose tissue created_by: dph creation_date: 2009-05-15T12:36:28Z @@ -97137,8 +96608,8 @@ namespace: biological_process def: "The progression of a fat pad from its initial formation to its mature structure. A fat pad is an accumulation of adipose tissue." [GOC:dph] is_a: GO:0060612 ! adipose tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003916 ! fat pad -relationship: results_in_development_of UBERON:0003916 ! fat pad +intersection_of: RO:0002296 UBERON:0003916 ! results in development of fat pad +relationship: RO:0002296 UBERON:0003916 ! results in development of fat pad created_by: dph creation_date: 2009-05-15T12:42:08Z @@ -97150,9 +96621,9 @@ def: "The morphogenetic process in which a bud forms from the mammary placode. A is_a: GO:0016331 ! morphogenesis of embryonic epithelium is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005333 ! mammary bud +intersection_of: RO:0002297 UBERON:0005333 ! results in formation of anatomical entity mammary bud relationship: part_of GO:0060648 ! mammary gland bud morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005333 ! mammary bud +relationship: RO:0002297 UBERON:0005333 ! results in formation of anatomical entity mammary bud created_by: dph creation_date: 2009-05-18T08:43:14Z @@ -97165,9 +96636,9 @@ synonym: "mammary gland sprout formation" EXACT [GOC:dph] is_a: GO:0016331 ! morphogenesis of embryonic epithelium is_a: GO:0072175 ! epithelial tube formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0004182 ! mammary gland cord +intersection_of: RO:0002297 UBERON:0004182 ! results in formation of anatomical entity mammary gland cord relationship: part_of GO:0060652 ! mammary gland cord morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0004182 ! mammary gland cord +relationship: RO:0002297 UBERON:0004182 ! results in formation of anatomical entity mammary gland cord created_by: dph creation_date: 2009-05-18T08:57:58Z @@ -97178,9 +96649,9 @@ namespace: biological_process def: "The progression of the nipple over time, from its formation to the mature structure. The nipple is a part of the mammary gland that protrudes from the surface ectoderm." [GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002030 ! nipple +intersection_of: RO:0002296 UBERON:0002030 ! results in development of nipple relationship: part_of GO:0030879 ! mammary gland development -relationship: results_in_development_of UBERON:0002030 ! nipple +relationship: RO:0002296 UBERON:0002030 ! results in development of nipple created_by: dph creation_date: 2009-05-18T09:29:38Z @@ -97203,8 +96674,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of chromosome condensation, the progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells." [GOC:dph, GOC:tb] is_a: GO:0033044 ! regulation of chromosome organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030261 ! chromosome condensation -relationship: regulates GO:0030261 ! chromosome condensation +intersection_of: RO:0002211 GO:0030261 ! regulates (processual) chromosome condensation +relationship: RO:0002211 GO:0030261 ! regulates (processual) chromosome condensation created_by: dph creation_date: 2009-05-18T02:12:13Z @@ -97216,8 +96687,8 @@ def: "Any process that modulates the rate, frequency, or extent of vesicle-media is_a: GO:0050794 ! regulation of cellular process is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0016192 ! vesicle-mediated transport -relationship: regulates GO:0016192 ! vesicle-mediated transport +intersection_of: RO:0002211 GO:0016192 ! regulates (processual) vesicle-mediated transport +relationship: RO:0002211 GO:0016192 ! regulates (processual) vesicle-mediated transport created_by: dph creation_date: 2009-05-18T02:29:43Z @@ -97228,8 +96699,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of microtubule-based movement, the movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins." [GOC:dph, GOC:tb] is_a: GO:0032886 ! regulation of microtubule-based process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007018 ! microtubule-based movement -relationship: regulates GO:0007018 ! microtubule-based movement +intersection_of: RO:0002211 GO:0007018 ! regulates (processual) microtubule-based movement +relationship: RO:0002211 GO:0007018 ! regulates (processual) microtubule-based movement created_by: dph creation_date: 2009-05-18T03:07:02Z @@ -97241,10 +96712,10 @@ def: "Any process that mediates the transfer of information from a mesenchymal c synonym: "mesenchymal-epithelial cell signalling" EXACT [GOC:mah] is_a: GO:0007267 ! cell-cell signaling intersection_of: GO:0007267 ! cell-cell signaling -intersection_of: has_end_location CL:0000066 ! epithelial cell -intersection_of: has_start_location CL:0008019 ! mesenchymal cell -relationship: has_end_location CL:0000066 ! epithelial cell -relationship: has_start_location CL:0008019 ! mesenchymal cell +intersection_of: RO:0002231 CL:0008019 ! has start location mesenchymal cell +intersection_of: RO:0002232 CL:0000066 ! has end location epithelial cell +relationship: RO:0002231 CL:0008019 ! has start location mesenchymal cell +relationship: RO:0002232 CL:0000066 ! has end location epithelial cell created_by: dph creation_date: 2009-05-19T03:59:05Z @@ -97280,9 +96751,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized epithelial cell becomes a more specialized epithelial cell of the mammary gland." [GOC:dph] is_a: GO:0030855 ! epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002327 ! mammary gland epithelial cell +intersection_of: RO:0002315 CL:0002327 ! results in acquisition of features of mammary gland epithelial cell relationship: part_of GO:0061180 ! mammary gland epithelium development -relationship: results_in_acquisition_of_features_of CL:0002327 ! mammary gland epithelial cell +relationship: RO:0002315 CL:0002327 ! results in acquisition of features of mammary gland epithelial cell created_by: dph creation_date: 2009-05-29T08:03:07Z @@ -97305,9 +96776,9 @@ namespace: biological_process def: "The process in which anatomical structures of the mammary gland buds are generated and organized. Mammary gland buds form by an outpocketing of the mammary placodes and grow to invade the mammary fat, when they form the mammary cord." [GOC:dph, PMID:12558599] is_a: GO:0060572 ! morphogenesis of an epithelial bud intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005333 ! mammary bud +intersection_of: RO:0002298 UBERON:0005333 ! results in morphogenesis of mammary bud relationship: part_of GO:0060603 ! mammary gland duct morphogenesis -relationship: results_in_morphogenesis_of UBERON:0005333 ! mammary bud +relationship: RO:0002298 UBERON:0005333 ! results in morphogenesis of mammary bud created_by: dph creation_date: 2009-05-29T08:42:22Z @@ -97319,9 +96790,9 @@ def: "The process in which anatomical structures of the mammary gland cord are g synonym: "mammary gland sprout morphogenesis" EXACT [GOC:dph] is_a: GO:0060562 ! epithelial tube morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004182 ! mammary gland cord +intersection_of: RO:0002298 UBERON:0004182 ! results in morphogenesis of mammary gland cord relationship: part_of GO:0060603 ! mammary gland duct morphogenesis -relationship: results_in_morphogenesis_of UBERON:0004182 ! mammary gland cord +relationship: RO:0002298 UBERON:0004182 ! results in morphogenesis of mammary gland cord created_by: dph creation_date: 2009-05-29T09:06:56Z @@ -97357,10 +96828,10 @@ namespace: biological_process def: "The process in which the nipple is generated and organized." [GOC:dph] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002030 ! nipple +intersection_of: RO:0002298 UBERON:0002030 ! results in morphogenesis of nipple relationship: part_of GO:0060443 ! mammary gland morphogenesis relationship: part_of GO:0060618 ! nipple development -relationship: results_in_morphogenesis_of UBERON:0002030 ! nipple +relationship: RO:0002298 UBERON:0002030 ! results in morphogenesis of nipple created_by: dph creation_date: 2009-05-29T10:45:44Z @@ -97371,9 +96842,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of the nipple sheath from the unspecified epidermis. This process begins with a circular ingrowth of the epidermis around the region of the mammary sprout. It ends before the region begins to elevate." [GOC:dph, PMID:12558599] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005083 ! nipple sheath +intersection_of: RO:0002297 UBERON:0005083 ! results in formation of anatomical entity nipple sheath relationship: part_of GO:0060658 ! nipple morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005083 ! nipple sheath +relationship: RO:0002297 UBERON:0005083 ! results in formation of anatomical entity nipple sheath created_by: dph creation_date: 2009-05-29T10:48:39Z @@ -97396,9 +96867,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a submandibular salivary gland. This process begins with a thickening of the epithelium next to the tongue and ends when a bud linked to the oral surface is formed." [GOC:dph, PMID:17336109] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001736 ! submandibular gland +intersection_of: RO:0002297 UBERON:0001736 ! results in formation of anatomical entity submandibular gland relationship: part_of GO:0007435 ! salivary gland morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001736 ! submandibular gland +relationship: RO:0002297 UBERON:0001736 ! results in formation of anatomical entity submandibular gland created_by: dph creation_date: 2009-06-01T08:07:16Z @@ -97421,9 +96892,9 @@ namespace: biological_process def: "The process in which the embryonic placenta is generated and organized." [GOC:dph] is_a: GO:0048598 ! embryonic morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0007106 ! chorionic villus +intersection_of: RO:0002298 UBERON:0007106 ! results in morphogenesis of chorionic villus relationship: part_of GO:0001892 ! embryonic placenta development -relationship: results_in_morphogenesis_of UBERON:0007106 ! chorionic villus +relationship: RO:0002298 UBERON:0007106 ! results in morphogenesis of chorionic villus created_by: dph creation_date: 2009-06-02T09:33:37Z @@ -97485,9 +96956,9 @@ namespace: biological_process def: "The process in which the ureteric bud is generated and organized." [GOC:dph, GOC:mtg_kidney_jan10] is_a: GO:0072171 ! mesonephric tubule morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000084 ! ureteric bud +intersection_of: RO:0002298 UBERON:0000084 ! results in morphogenesis of ureteric bud relationship: part_of GO:0001657 ! ureteric bud development -relationship: results_in_morphogenesis_of UBERON:0000084 ! ureteric bud +relationship: RO:0002298 UBERON:0000084 ! results in morphogenesis of ureteric bud created_by: dph creation_date: 2009-06-02T01:31:41Z @@ -97498,9 +96969,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of the ureteric bud from the Wolffian duct. This process begins when the bud protrudes from the duct and ends when it is a recognizable bud." [GOC:dph, PMID:16916378] is_a: GO:0072172 ! mesonephric tubule formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000084 ! ureteric bud +intersection_of: RO:0002297 UBERON:0000084 ! results in formation of anatomical entity ureteric bud relationship: part_of GO:0060675 ! ureteric bud morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0000084 ! ureteric bud +relationship: RO:0002297 UBERON:0000084 ! results in formation of anatomical entity ureteric bud created_by: dph creation_date: 2009-06-02T01:47:23Z @@ -97533,9 +97004,9 @@ namespace: biological_process def: "The process in which the primary ureteric bud grows along its axis dorsally toward the metanephric blastema." [GOC:dph, PMID:16916378] is_a: GO:0060560 ! developmental growth involved in morphogenesis intersection_of: GO:0048589 ! developmental growth -intersection_of: results_in_growth_of UBERON:0005312 ! primary ureteric bud +intersection_of: RO:0002343 UBERON:0005312 ! results in growth of primary ureteric bud relationship: part_of GO:0060677 ! ureteric bud elongation -relationship: results_in_growth_of UBERON:0005312 ! primary ureteric bud +relationship: RO:0002343 UBERON:0005312 ! results in growth of primary ureteric bud created_by: dph creation_date: 2009-06-02T02:56:01Z @@ -97547,10 +97018,10 @@ def: "Any process that results in the transfer of information from an epithelial synonym: "epithelial-mesenchymal cell signalling" EXACT [GOC:mah] is_a: GO:0007267 ! cell-cell signaling intersection_of: GO:0007267 ! cell-cell signaling -intersection_of: has_end_location CL:0008019 ! mesenchymal cell -intersection_of: has_start_location CL:0000066 ! epithelial cell -relationship: has_end_location CL:0008019 ! mesenchymal cell -relationship: has_start_location CL:0000066 ! epithelial cell +intersection_of: RO:0002231 CL:0000066 ! has start location epithelial cell +intersection_of: RO:0002232 CL:0008019 ! has end location mesenchymal cell +relationship: RO:0002231 CL:0000066 ! has start location epithelial cell +relationship: RO:0002232 CL:0008019 ! has end location mesenchymal cell created_by: dph creation_date: 2009-06-03T06:36:46Z @@ -97564,9 +97035,9 @@ is_a: GO:0060688 ! regulation of morphogenesis of a branching structure is_a: GO:1905330 ! regulation of morphogenesis of an epithelium is_a: GO:2000241 ! regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060513 ! prostatic bud formation -relationship: regulates GO:0001763 ! morphogenesis of a branching structure -relationship: regulates GO:0060513 ! prostatic bud formation +intersection_of: RO:0002211 GO:0060513 ! regulates (processual) prostatic bud formation +relationship: RO:0002211 GO:0001763 ! regulates (processual) morphogenesis of a branching structure +relationship: RO:0002211 GO:0060513 ! regulates (processual) prostatic bud formation created_by: dph creation_date: 2009-06-05T12:29:26Z @@ -97579,8 +97050,8 @@ is_a: GO:0060685 ! regulation of prostatic bud formation is_a: GO:1905331 ! negative regulation of morphogenesis of an epithelium is_a: GO:2000242 ! negative regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060513 ! prostatic bud formation -relationship: negatively_regulates GO:0060513 ! prostatic bud formation +intersection_of: RO:0002212 GO:0060513 ! negatively regulates prostatic bud formation +relationship: RO:0002212 GO:0060513 ! negatively regulates prostatic bud formation created_by: dph creation_date: 2009-06-05T12:35:25Z @@ -97593,8 +97064,8 @@ is_a: GO:0060688 ! regulation of morphogenesis of a branching structure is_a: GO:1905330 ! regulation of morphogenesis of an epithelium is_a: GO:2000241 ! regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060442 ! branching involved in prostate gland morphogenesis -relationship: regulates GO:0060442 ! branching involved in prostate gland morphogenesis +intersection_of: RO:0002211 GO:0060442 ! regulates (processual) branching involved in prostate gland morphogenesis +relationship: RO:0002211 GO:0060442 ! regulates (processual) branching involved in prostate gland morphogenesis created_by: dph creation_date: 2009-06-05T12:37:14Z @@ -97606,8 +97077,8 @@ def: "Any process that modulates the rate, frequency, or extent of branching mor is_a: GO:0022603 ! regulation of anatomical structure morphogenesis is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001763 ! morphogenesis of a branching structure -relationship: regulates GO:0001763 ! morphogenesis of a branching structure +intersection_of: RO:0002211 GO:0001763 ! regulates (processual) morphogenesis of a branching structure +relationship: RO:0002211 GO:0001763 ! regulates (processual) morphogenesis of a branching structure created_by: dph creation_date: 2009-06-05T12:41:44Z @@ -97671,8 +97142,8 @@ is_a: GO:0060688 ! regulation of morphogenesis of a branching structure is_a: GO:1905330 ! regulation of morphogenesis of an epithelium is_a: GO:2000027 ! regulation of animal organ morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060445 ! branching involved in salivary gland morphogenesis -relationship: regulates GO:0060445 ! branching involved in salivary gland morphogenesis +intersection_of: RO:0002211 GO:0060445 ! regulates (processual) branching involved in salivary gland morphogenesis +relationship: RO:0002211 GO:0060445 ! regulates (processual) branching involved in salivary gland morphogenesis created_by: dph creation_date: 2009-06-08T01:14:44Z @@ -97681,12 +97152,11 @@ id: GO:0060696 name: regulation of phospholipid catabolic process namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of phospholipid catabolism, the chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester." [GOC:BHF, GOC:dph, GOC:tb] -is_a: GO:0031329 ! regulation of cellular catabolic process is_a: GO:0050994 ! regulation of lipid catabolic process is_a: GO:1903725 ! regulation of phospholipid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009395 ! phospholipid catabolic process -relationship: regulates GO:0009395 ! phospholipid catabolic process +intersection_of: RO:0002211 GO:0009395 ! regulates (processual) phospholipid catabolic process +relationship: RO:0002211 GO:0009395 ! regulates (processual) phospholipid catabolic process created_by: dph creation_date: 2009-06-08T02:25:45Z @@ -97695,13 +97165,12 @@ id: GO:0060697 name: positive regulation of phospholipid catabolic process namespace: biological_process def: "Any process that increases the rate, frequency, or extent of phospholipid catabolism, the chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester." [GOC:BHF, GOC:dph, GOC:tb] -is_a: GO:0031331 ! positive regulation of cellular catabolic process is_a: GO:0050996 ! positive regulation of lipid catabolic process is_a: GO:0060696 ! regulation of phospholipid catabolic process is_a: GO:1903727 ! positive regulation of phospholipid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009395 ! phospholipid catabolic process -relationship: positively_regulates GO:0009395 ! phospholipid catabolic process +intersection_of: RO:0002213 GO:0009395 ! positively regulates phospholipid catabolic process +relationship: RO:0002213 GO:0009395 ! positively regulates phospholipid catabolic process created_by: dph creation_date: 2009-06-08T02:28:38Z @@ -97752,9 +97221,9 @@ def: "The process in which a relatively unspecialized cell of the ectoplacental synonym: "spongiotrophoblast cell differentiation" EXACT [GOC:cjm] is_a: GO:0060706 ! cell differentiation involved in embryonic placenta development intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002499 ! spongiotrophoblast cell +intersection_of: RO:0002315 CL:0002499 ! results in acquisition of features of spongiotrophoblast cell relationship: part_of GO:0060712 ! spongiotrophoblast layer development -relationship: results_in_acquisition_of_features_of CL:0002499 ! spongiotrophoblast cell +relationship: RO:0002315 CL:0002499 ! results in acquisition of features of spongiotrophoblast cell created_by: dph creation_date: 2009-06-09T10:38:10Z @@ -97765,9 +97234,9 @@ namespace: biological_process def: "The process in which the labyrinthine layer of the placenta progresses, from its formation to its mature state." [GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003946 ! placenta labyrinth +intersection_of: RO:0002296 UBERON:0003946 ! results in development of placenta labyrinth relationship: part_of GO:0001892 ! embryonic placenta development -relationship: results_in_development_of UBERON:0003946 ! placenta labyrinth +relationship: RO:0002296 UBERON:0003946 ! results in development of placenta labyrinth created_by: dph creation_date: 2009-06-09T03:27:43Z @@ -97778,9 +97247,9 @@ namespace: biological_process def: "The process in which the spongiotrophoblast layer of the placenta progresses from its formation to its mature state." [GOC:dph] is_a: GO:0009888 ! tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004021 ! spongiotrophoblast layer +intersection_of: RO:0002296 UBERON:0004021 ! results in development of spongiotrophoblast layer relationship: part_of GO:0001892 ! embryonic placenta development -relationship: results_in_development_of UBERON:0004021 ! spongiotrophoblast layer +relationship: RO:0002296 UBERON:0004021 ! results in development of spongiotrophoblast layer created_by: dph creation_date: 2009-06-09T03:33:40Z @@ -97791,10 +97260,10 @@ namespace: biological_process def: "The process in which the labyrinthine layer of the placenta is generated and organized." [GOC:dph] is_a: GO:0048598 ! embryonic morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003946 ! placenta labyrinth +intersection_of: RO:0002298 UBERON:0003946 ! results in morphogenesis of placenta labyrinth relationship: part_of GO:0060669 ! embryonic placenta morphogenesis relationship: part_of GO:0060711 ! labyrinthine layer development -relationship: results_in_morphogenesis_of UBERON:0003946 ! placenta labyrinth +relationship: RO:0002298 UBERON:0003946 ! results in morphogenesis of placenta labyrinth created_by: dph creation_date: 2009-06-10T08:10:19Z @@ -97805,9 +97274,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of the labyrinthine layer of the placenta." [GOC:dph] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003946 ! placenta labyrinth +intersection_of: RO:0002297 UBERON:0003946 ! results in formation of anatomical entity placenta labyrinth relationship: part_of GO:0060713 ! labyrinthine layer morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0003946 ! placenta labyrinth +relationship: RO:0002297 UBERON:0003946 ! results in formation of anatomical entity placenta labyrinth created_by: dph creation_date: 2009-06-10T08:13:14Z @@ -97819,9 +97288,9 @@ def: "The process whose specific outcome is the progression of a blood vessel of is_a: GO:0048568 ! embryonic organ development is_a: GO:0060674 ! placenta blood vessel development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004183 ! placental labyrinth blood vessel +intersection_of: RO:0002296 UBERON:0004183 ! results in development of placental labyrinth blood vessel relationship: part_of GO:0060711 ! labyrinthine layer development -relationship: results_in_development_of UBERON:0004183 ! placental labyrinth blood vessel +relationship: RO:0002296 UBERON:0004183 ! results in development of placental labyrinth blood vessel created_by: dph creation_date: 2009-06-11T09:04:38Z @@ -97832,8 +97301,8 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of a chorion from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The chorion is an extraembryonic membrane." [GOC:dph] is_a: GO:1903867 ! extraembryonic membrane development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003124 ! chorion membrane -relationship: results_in_development_of UBERON:0003124 ! chorion membrane +intersection_of: RO:0002296 UBERON:0003124 ! results in development of chorion membrane +relationship: RO:0002296 UBERON:0003124 ! results in development of chorion membrane created_by: dph creation_date: 2009-06-11T02:37:50Z @@ -97844,9 +97313,9 @@ namespace: biological_process def: "The process in which relatively unspecialized cells of the ectoplacental cone acquire specialized structural and/or functional features that characterize chorionic trophoblasts. These cells will migrate towards the spongiotrophoblast layer and give rise to syncytiotrophoblasts of the labyrinthine layer." [CL:0011101, GOC:dph, PMID:16983341] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0011101 ! chorionic trophoblast cell +intersection_of: RO:0002315 CL:0011101 ! results in acquisition of features of chorionic trophoblast cell relationship: part_of GO:0060717 ! chorion development -relationship: results_in_acquisition_of_features_of CL:0011101 ! chorionic trophoblast cell +relationship: RO:0002315 CL:0011101 ! results in acquisition of features of chorionic trophoblast cell created_by: dph creation_date: 2009-06-11T02:48:27Z @@ -97857,9 +97326,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the chorionic trophoblast over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate." [CL:0011101, GOC:16983341, GOC:dph] is_a: GO:0048468 ! cell development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:0011101 ! chorionic trophoblast cell +intersection_of: RO:0002296 CL:0011101 ! results in development of chorionic trophoblast cell relationship: part_of GO:0060718 ! chorionic trophoblast cell differentiation -relationship: results_in_development_of CL:0011101 ! chorionic trophoblast cell +relationship: RO:0002296 CL:0011101 ! results in development of chorionic trophoblast cell created_by: dph creation_date: 2009-06-11T02:58:45Z @@ -97882,8 +97351,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of cell proliferation involved in embryonic placenta development." [GOC:dph] is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060722 ! cell proliferation involved in embryonic placenta development -relationship: regulates GO:0060722 ! cell proliferation involved in embryonic placenta development +intersection_of: RO:0002211 GO:0060722 ! regulates (processual) cell proliferation involved in embryonic placenta development +relationship: RO:0002211 GO:0060722 ! regulates (processual) cell proliferation involved in embryonic placenta development created_by: dph creation_date: 2009-06-12T12:50:23Z @@ -97895,9 +97364,9 @@ def: "The increase in size or mass of the prostate gland where the increase in s is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0035265 ! organ growth intersection_of: GO:0048589 ! developmental growth -intersection_of: results_in_growth_of UBERON:0002367 ! prostate gland +intersection_of: RO:0002343 UBERON:0002367 ! results in growth of prostate gland relationship: part_of GO:0030850 ! prostate gland development -relationship: results_in_growth_of UBERON:0002367 ! prostate gland +relationship: RO:0002343 UBERON:0002367 ! results in growth of prostate gland created_by: dph creation_date: 2009-06-15T09:21:52Z @@ -97950,9 +97419,9 @@ def: "The process in which the anatomical structures of epithelia of the prostat is_a: GO:0002009 ! morphogenesis of an epithelium is_a: GO:0003006 ! developmental process involved in reproduction intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000428 ! prostate epithelium +intersection_of: RO:0002298 UBERON:0000428 ! results in morphogenesis of prostate epithelium relationship: part_of GO:0060512 ! prostate gland morphogenesis -relationship: results_in_morphogenesis_of UBERON:0000428 ! prostate epithelium +relationship: RO:0002298 UBERON:0000428 ! results in morphogenesis of prostate epithelium created_by: dph creation_date: 2009-06-16T09:23:22Z @@ -97964,10 +97433,10 @@ def: "The process in which the prostate gland stroma is generated and organized. is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004184 ! prostate gland stroma +intersection_of: RO:0002298 UBERON:0004184 ! results in morphogenesis of prostate gland stroma relationship: part_of GO:0060512 ! prostate gland morphogenesis relationship: part_of GO:0061448 ! connective tissue development -relationship: results_in_morphogenesis_of UBERON:0004184 ! prostate gland stroma +relationship: RO:0002298 UBERON:0004184 ! results in morphogenesis of prostate gland stroma created_by: dph creation_date: 2009-06-16T09:27:01Z @@ -98005,9 +97474,9 @@ namespace: biological_process def: "The progression of the mammary gland alveolus over time, from its formation to its mature state. The mammary gland alveolus is a sac-like structure that is found in the mature gland." [GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003214 ! mammary gland alveolus +intersection_of: RO:0002296 UBERON:0003214 ! results in development of mammary gland alveolus relationship: part_of GO:0061377 ! mammary gland lobule development -relationship: results_in_development_of UBERON:0003214 ! mammary gland alveolus +relationship: RO:0002296 UBERON:0003214 ! results in development of mammary gland alveolus created_by: dph creation_date: 2009-06-22T10:52:12Z @@ -98018,8 +97487,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of a response to cytokine stimulus." [GOC:BHF, GOC:dph, GOC:tb] is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0034097 ! response to cytokine -relationship: regulates GO:0034097 ! response to cytokine +intersection_of: RO:0002211 GO:0034097 ! regulates (processual) response to cytokine +relationship: RO:0002211 GO:0034097 ! regulates (processual) response to cytokine created_by: dph creation_date: 2009-06-22T02:56:12Z @@ -98031,8 +97500,8 @@ def: "Any process that increases the rate, frequency, or extent of a response to is_a: GO:0048584 ! positive regulation of response to stimulus is_a: GO:0060759 ! regulation of response to cytokine stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0034097 ! response to cytokine -relationship: positively_regulates GO:0034097 ! response to cytokine +intersection_of: RO:0002213 GO:0034097 ! positively regulates response to cytokine +relationship: RO:0002213 GO:0034097 ! positively regulates response to cytokine created_by: dph creation_date: 2009-06-22T02:58:04Z @@ -98044,8 +97513,8 @@ def: "Any process that decreases the rate, frequency, or extent of a response to is_a: GO:0048585 ! negative regulation of response to stimulus is_a: GO:0060759 ! regulation of response to cytokine stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0034097 ! response to cytokine -relationship: negatively_regulates GO:0034097 ! response to cytokine +intersection_of: RO:0002212 GO:0034097 ! negatively regulates response to cytokine +relationship: RO:0002212 GO:0034097 ! negatively regulates response to cytokine created_by: dph creation_date: 2009-06-22T02:59:57Z @@ -98058,8 +97527,8 @@ is_a: GO:0060688 ! regulation of morphogenesis of a branching structure is_a: GO:1905330 ! regulation of morphogenesis of an epithelium is_a: GO:2000027 ! regulation of animal organ morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060444 ! branching involved in mammary gland duct morphogenesis -relationship: regulates GO:0060444 ! branching involved in mammary gland duct morphogenesis +intersection_of: RO:0002211 GO:0060444 ! regulates (processual) branching involved in mammary gland duct morphogenesis +relationship: RO:0002211 GO:0060444 ! regulates (processual) branching involved in mammary gland duct morphogenesis created_by: dph creation_date: 2009-06-22T05:20:33Z @@ -98070,9 +97539,9 @@ namespace: biological_process def: "The morphogenetic growth of the large, club-shaped terminal end of a mammary gland duct during prepubertal growth and during puberty." [GOC:dph, PMID:10804170] is_a: GO:0060560 ! developmental growth involved in morphogenesis intersection_of: GO:0048589 ! developmental growth -intersection_of: results_in_growth_of UBERON:0005313 ! mammary duct terminal end bud +intersection_of: RO:0002343 UBERON:0005313 ! results in growth of mammary duct terminal end bud relationship: part_of GO:0060603 ! mammary gland duct morphogenesis -relationship: results_in_growth_of UBERON:0005313 ! mammary duct terminal end bud +relationship: RO:0002343 UBERON:0005313 ! results in growth of mammary duct terminal end bud created_by: dph creation_date: 2009-07-06T07:33:50Z @@ -98108,8 +97577,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency or extent of epithelial cell proliferation that contributes to the progression of the prostate gland over time." [GOC:dph] is_a: GO:0050678 ! regulation of epithelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060767 ! epithelial cell proliferation involved in prostate gland development -relationship: regulates GO:0060767 ! epithelial cell proliferation involved in prostate gland development +intersection_of: RO:0002211 GO:0060767 ! regulates (processual) epithelial cell proliferation involved in prostate gland development +relationship: RO:0002211 GO:0060767 ! regulates (processual) epithelial cell proliferation involved in prostate gland development created_by: dph creation_date: 2009-07-08T07:34:56Z @@ -98123,9 +97592,9 @@ is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0060768 ! regulation of epithelial cell proliferation involved in prostate gland development is_a: GO:2000243 ! positive regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060767 ! epithelial cell proliferation involved in prostate gland development -relationship: positively_regulates GO:0032502 ! developmental process -relationship: positively_regulates GO:0060767 ! epithelial cell proliferation involved in prostate gland development +intersection_of: RO:0002213 GO:0060767 ! positively regulates epithelial cell proliferation involved in prostate gland development +relationship: RO:0002213 GO:0032502 ! positively regulates developmental process +relationship: RO:0002213 GO:0060767 ! positively regulates epithelial cell proliferation involved in prostate gland development created_by: dph creation_date: 2009-07-08T07:38:02Z @@ -98140,10 +97609,10 @@ is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:0060768 ! regulation of epithelial cell proliferation involved in prostate gland development is_a: GO:2000242 ! negative regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060767 ! epithelial cell proliferation involved in prostate gland development -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0032502 ! developmental process -relationship: negatively_regulates GO:0060767 ! epithelial cell proliferation involved in prostate gland development +intersection_of: RO:0002212 GO:0060767 ! negatively regulates epithelial cell proliferation involved in prostate gland development +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0032502 ! negatively regulates developmental process +relationship: RO:0002212 GO:0060767 ! negatively regulates epithelial cell proliferation involved in prostate gland development created_by: dph creation_date: 2009-07-08T07:40:27Z @@ -98166,8 +97635,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of mesenchymal cell proliferation that contributes to the progression of the prostate gland over time. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets." [GOC:dph, PMID:12221011] is_a: GO:0010464 ! regulation of mesenchymal cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060781 ! mesenchymal cell proliferation involved in prostate gland development -relationship: regulates GO:0060781 ! mesenchymal cell proliferation involved in prostate gland development +intersection_of: RO:0002211 GO:0060781 ! regulates (processual) mesenchymal cell proliferation involved in prostate gland development +relationship: RO:0002211 GO:0060781 ! regulates (processual) mesenchymal cell proliferation involved in prostate gland development created_by: dph creation_date: 2009-07-28T11:54:20Z @@ -98217,9 +97686,9 @@ namespace: biological_process def: "The developmental process in which an ectodermal placode forms. An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005085 ! ectodermal placode +intersection_of: RO:0002297 UBERON:0005085 ! results in formation of anatomical entity ectodermal placode relationship: part_of GO:0071697 ! ectodermal placode morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005085 ! ectodermal placode +relationship: RO:0002297 UBERON:0005085 ! results in formation of anatomical entity ectodermal placode created_by: dph creation_date: 2009-08-04T12:15:57Z @@ -98230,9 +97699,9 @@ namespace: biological_process def: "The developmental process in which a hair placode forms. An hair follicle placode is a thickening of the ectoderm that will give rise to the hair follicle bud." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0060788 ! ectodermal placode formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005086 ! hair follicle placode +intersection_of: RO:0002297 UBERON:0005086 ! results in formation of anatomical entity hair follicle placode relationship: part_of GO:0001942 ! hair follicle development -relationship: results_in_formation_of_anatomical_entity UBERON:0005086 ! hair follicle placode +relationship: RO:0002297 UBERON:0005086 ! results in formation of anatomical entity hair follicle placode created_by: dph creation_date: 2009-08-04T12:18:26Z @@ -98243,9 +97712,9 @@ namespace: biological_process def: "The developmental process in which the tooth placode forms. A tooth placode is a thickening of the ectoderm that will give rise to the tooth bud." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0060788 ! ectodermal placode formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005087 ! tooth placode +intersection_of: RO:0002297 UBERON:0005087 ! results in formation of anatomical entity tooth placode relationship: part_of GO:0042475 ! odontogenesis of dentin-containing tooth -relationship: results_in_formation_of_anatomical_entity UBERON:0005087 ! tooth placode +relationship: RO:0002297 UBERON:0005087 ! results in formation of anatomical entity tooth placode created_by: dph creation_date: 2009-08-04T12:21:47Z @@ -98256,9 +97725,9 @@ namespace: biological_process def: "The developmental process in which a sebaceous gland placode forms. A sebaceous gland placode is a thickening of the ectoderm that will give rise to the sebaceous gland bud." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0060788 ! ectodermal placode formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005088 ! sebaceous gland placode +intersection_of: RO:0002297 UBERON:0005088 ! results in formation of anatomical entity sebaceous gland placode relationship: part_of GO:0048733 ! sebaceous gland development -relationship: results_in_formation_of_anatomical_entity UBERON:0005088 ! sebaceous gland placode +relationship: RO:0002297 UBERON:0005088 ! results in formation of anatomical entity sebaceous gland placode created_by: dph creation_date: 2009-08-04T12:23:09Z @@ -98269,8 +97738,8 @@ namespace: biological_process def: "The progression of the sweat gland over time, from its formation to the mature structure. Sweat glands secrete an aqueous solution that is used in thermoregulation." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0048732 ! gland development intersection_of: GO:0048732 ! gland development -intersection_of: results_in_development_of UBERON:0001820 ! sweat gland -relationship: results_in_development_of UBERON:0001820 ! sweat gland +intersection_of: RO:0002296 UBERON:0001820 ! results in development of sweat gland +relationship: RO:0002296 UBERON:0001820 ! results in development of sweat gland created_by: dph creation_date: 2009-08-04T12:35:12Z @@ -98281,9 +97750,9 @@ namespace: biological_process def: "The developmental process in which the sweat gland placode forms. An sweat gland placode is a thickening of the ectoderm that will give rise to the sweat gland bud." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0060788 ! ectodermal placode formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005089 ! sweat gland placode +intersection_of: RO:0002297 UBERON:0005089 ! results in formation of anatomical entity sweat gland placode relationship: part_of GO:0060792 ! sweat gland development -relationship: results_in_formation_of_anatomical_entity UBERON:0005089 ! sweat gland placode +relationship: RO:0002297 UBERON:0005089 ! results in formation of anatomical entity sweat gland placode created_by: dph creation_date: 2009-08-04T12:38:10Z @@ -98307,8 +97776,8 @@ def: "Any process that modulates the rate, frequency or extent of cell different is_a: GO:0045595 ! regulation of cell differentiation is_a: GO:2000241 ! regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060706 ! cell differentiation involved in embryonic placenta development -relationship: regulates GO:0060706 ! cell differentiation involved in embryonic placenta development +intersection_of: RO:0002211 GO:0060706 ! regulates (processual) cell differentiation involved in embryonic placenta development +relationship: RO:0002211 GO:0060706 ! regulates (processual) cell differentiation involved in embryonic placenta development created_by: dph creation_date: 2009-08-06T01:20:25Z @@ -98321,8 +97790,8 @@ is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:0060800 ! regulation of cell differentiation involved in embryonic placenta development is_a: GO:2000242 ! negative regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060706 ! cell differentiation involved in embryonic placenta development -relationship: negatively_regulates GO:0060706 ! cell differentiation involved in embryonic placenta development +intersection_of: RO:0002212 GO:0060706 ! negatively regulates cell differentiation involved in embryonic placenta development +relationship: RO:0002212 GO:0060706 ! negatively regulates cell differentiation involved in embryonic placenta development created_by: dph creation_date: 2009-08-06T02:02:18Z @@ -98345,9 +97814,9 @@ namespace: biological_process def: "The process in which a venous blood vessel endothelial cell acquires specialized features of a lymphatic vessel endothelial cell, a thin flattened cell that lines the inside surfaces of lymph vessels." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0045446 ! endothelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002138 ! endothelial cell of lymphatic vessel +intersection_of: RO:0002315 CL:0002138 ! results in acquisition of features of endothelial cell of lymphatic vessel relationship: part_of GO:0001945 ! lymph vessel development -relationship: results_in_acquisition_of_features_of CL:0002138 ! endothelial cell of lymphatic vessel +relationship: RO:0002315 CL:0002138 ! results in acquisition of features of endothelial cell of lymphatic vessel created_by: dph creation_date: 2009-08-11T03:45:20Z @@ -98358,9 +97827,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a blood vessel endothelial cell, a thin flattened cell that lines the inside surfaces of blood vessels." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0045446 ! endothelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000071 ! blood vessel endothelial cell +intersection_of: RO:0002315 CL:0000071 ! results in acquisition of features of blood vessel endothelial cell relationship: part_of GO:0001568 ! blood vessel development -relationship: results_in_acquisition_of_features_of CL:0000071 ! blood vessel endothelial cell +relationship: RO:0002315 CL:0000071 ! results in acquisition of features of blood vessel endothelial cell created_by: dph creation_date: 2009-08-11T03:47:36Z @@ -98371,8 +97840,8 @@ namespace: biological_process def: "The progression of the artery over time, from its initial formation to the mature structure. An artery is a blood vessel that carries blood away from the heart to a capillary bed." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0001568 ! blood vessel development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001637 ! artery -relationship: results_in_development_of UBERON:0001637 ! artery +intersection_of: RO:0002296 UBERON:0001637 ! results in development of artery +relationship: RO:0002296 UBERON:0001637 ! results in development of artery created_by: dph creation_date: 2009-08-12T10:10:51Z @@ -98383,8 +97852,8 @@ namespace: biological_process def: "The progression of the venous blood vessel over time from its initial formation to the mature structure. Venous blood vessels carry blood back to the heart after the capillary bed." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0001568 ! blood vessel development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001638 ! vein -relationship: results_in_development_of UBERON:0001638 ! vein +intersection_of: RO:0002296 UBERON:0001638 ! results in development of vein +relationship: RO:0002296 UBERON:0001638 ! results in development of vein created_by: dph creation_date: 2009-08-12T10:14:07Z @@ -98395,8 +97864,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized endothelial cell acquires specialized features of an arterial endothelial cell, a thin flattened cell that lines the inside surfaces of arteries." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0060837 ! blood vessel endothelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000413 ! endothelial cell of artery -relationship: results_in_acquisition_of_features_of CL:1000413 ! endothelial cell of artery +intersection_of: RO:0002315 CL:1000413 ! results in acquisition of features of endothelial cell of artery +relationship: RO:0002315 CL:1000413 ! results in acquisition of features of endothelial cell of artery created_by: dph creation_date: 2009-08-12T10:41:34Z @@ -98407,8 +97876,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized endothelial cell acquires specialized features of a venous endothelial cell, a thin flattened cell that lines the inside surfaces of veins." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0060837 ! blood vessel endothelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002543 ! vein endothelial cell -relationship: results_in_acquisition_of_features_of CL:0002543 ! vein endothelial cell +intersection_of: RO:0002315 CL:0002543 ! results in acquisition of features of vein endothelial cell +relationship: RO:0002315 CL:0002543 ! results in acquisition of features of vein endothelial cell created_by: dph creation_date: 2009-08-12T10:43:40Z @@ -98433,9 +97902,9 @@ namespace: biological_process def: "The progression of the semicircular canal from its initial formation to the mature structure." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0035295 ! tube development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001840 ! semicircular canal +intersection_of: RO:0002296 UBERON:0001840 ! results in development of semicircular canal relationship: part_of GO:0048839 ! inner ear development -relationship: results_in_development_of UBERON:0001840 ! semicircular canal +relationship: RO:0002296 UBERON:0001840 ! results in development of semicircular canal created_by: dph creation_date: 2009-08-13T09:36:37Z @@ -98446,8 +97915,8 @@ namespace: biological_process def: "The progession of the anterior semicircular canal from its initial formation to the mature structure." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0060872 ! semicircular canal development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001841 ! anterior semicircular canal -relationship: results_in_development_of UBERON:0001841 ! anterior semicircular canal +intersection_of: RO:0002296 UBERON:0001841 ! results in development of anterior semicircular canal +relationship: RO:0002296 UBERON:0001841 ! results in development of anterior semicircular canal created_by: dph creation_date: 2009-08-13T09:39:49Z @@ -98458,8 +97927,8 @@ namespace: biological_process def: "The progession of the posterior semicircular canal from its initial formation to the mature structure." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0060872 ! semicircular canal development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001842 ! posterior semicircular canal -relationship: results_in_development_of UBERON:0001842 ! posterior semicircular canal +intersection_of: RO:0002296 UBERON:0001842 ! results in development of posterior semicircular canal +relationship: RO:0002296 UBERON:0001842 ! results in development of posterior semicircular canal created_by: dph creation_date: 2009-08-13T09:42:39Z @@ -98470,8 +97939,8 @@ namespace: biological_process def: "The progession of the lateral semicircular canal from its initial formation to the mature structure." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0060872 ! semicircular canal development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001843 ! lateral semicircular canal -relationship: results_in_development_of UBERON:0001843 ! lateral semicircular canal +intersection_of: RO:0002296 UBERON:0001843 ! results in development of lateral semicircular canal +relationship: RO:0002296 UBERON:0001843 ! results in development of lateral semicircular canal created_by: dph creation_date: 2009-08-13T09:43:25Z @@ -98482,9 +97951,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of the semicircular canal from the otic vesicle. This process begins with the regionalization of the vesicle that specifies the area where the vesicles will form and continues through the process of fusion which forms the initial tubes." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0035148 ! tube formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001840 ! semicircular canal +intersection_of: RO:0002297 UBERON:0001840 ! results in formation of anatomical entity semicircular canal relationship: part_of GO:0048752 ! semicircular canal morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001840 ! semicircular canal +relationship: RO:0002297 UBERON:0001840 ! results in formation of anatomical entity semicircular canal created_by: dph creation_date: 2009-08-13T09:45:07Z @@ -98520,9 +97989,9 @@ namespace: biological_process def: "Creation of the central hole of the semicircular canal by sealing the edges of the pouch that forms during the process of semicircular canal formation." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0060606 ! tube closure intersection_of: GO:0060606 ! tube closure -intersection_of: has_primary_input UBERON:0001840 ! semicircular canal -relationship: has_primary_input UBERON:0001840 ! semicircular canal +intersection_of: RO:0004009 UBERON:0001840 ! has primary input semicircular canal relationship: part_of GO:0060876 ! semicircular canal formation +relationship: RO:0004009 UBERON:0001840 ! has primary input semicircular canal created_by: dph creation_date: 2009-08-13T10:05:51Z @@ -98559,9 +98028,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the epidermis of the limb over time, from its formation to the mature structure. The limb epidermis is the outer epithelial layer of the limb, it is a complex stratified squamous epithelium." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0098773 ! skin epidermis development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0009200 ! limb epidermis +intersection_of: RO:0002296 UBERON:0009200 ! results in development of limb epidermis relationship: part_of GO:0060173 ! limb development -relationship: results_in_development_of UBERON:0009200 ! limb epidermis +relationship: RO:0002296 UBERON:0009200 ! results in development of limb epidermis created_by: dph creation_date: 2009-08-13T12:39:39Z @@ -98602,8 +98071,8 @@ def: "Any process that increases the rate, frequency or extent of macrophage cyt is_a: GO:0010935 ! regulation of macrophage cytokine production is_a: GO:0061081 ! positive regulation of myeloid leukocyte cytokine production involved in immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0010934 ! macrophage cytokine production -relationship: positively_regulates GO:0010934 ! macrophage cytokine production +intersection_of: RO:0002213 GO:0010934 ! positively regulates macrophage cytokine production +relationship: RO:0002213 GO:0010934 ! positively regulates macrophage cytokine production created_by: dph creation_date: 2009-09-04T02:32:18Z @@ -98615,9 +98084,9 @@ def: "The developmental process pertaining to the initial formation of the heart synonym: "cardiogenesis" RELATED [GOC:mtg_heart] is_a: GO:0048645 ! animal organ formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000948 ! heart +intersection_of: RO:0002297 UBERON:0000948 ! results in formation of anatomical entity heart relationship: part_of GO:0003007 ! heart morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0000948 ! heart +relationship: RO:0002297 UBERON:0000948 ! results in formation of anatomical entity heart created_by: dph creation_date: 2009-09-17T09:02:13Z @@ -98653,8 +98122,8 @@ def: "The process in which a relatively unspecialized cell acquires specialized synonym: "pacemaker cell differentiation" BROAD [] is_a: GO:0055007 ! cardiac muscle cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002072 ! nodal myocyte -relationship: results_in_acquisition_of_features_of CL:0002072 ! nodal myocyte +intersection_of: RO:0002315 CL:0002072 ! results in acquisition of features of nodal myocyte +relationship: RO:0002315 CL:0002072 ! results in acquisition of features of nodal myocyte created_by: dph creation_date: 2009-09-29T11:01:31Z @@ -98668,9 +98137,9 @@ synonym: "SAN cell differentiation" EXACT [GOC:BHF, GOC:mtg_cardiac_conduct_nov1 synonym: "sinus node cell differentiation" NARROW [GOC:BHF, GOC:mtg_cardiac_conduct_nov11] is_a: GO:0060920 ! cardiac pacemaker cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000409 ! myocyte of sinoatrial node +intersection_of: RO:0002315 CL:1000409 ! results in acquisition of features of myocyte of sinoatrial node relationship: part_of GO:0003163 ! sinoatrial node development -relationship: results_in_acquisition_of_features_of CL:1000409 ! myocyte of sinoatrial node +relationship: RO:0002315 CL:1000409 ! results in acquisition of features of myocyte of sinoatrial node created_by: dph creation_date: 2009-09-29T11:03:30Z @@ -98683,9 +98152,9 @@ synonym: "AV node cell differentiation" RELATED [GOC:mtg_heart] is_a: GO:0003292 ! cardiac septum cell differentiation is_a: GO:0060920 ! cardiac pacemaker cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000410 ! myocyte of atrioventricular node +intersection_of: RO:0002315 CL:1000410 ! results in acquisition of features of myocyte of atrioventricular node relationship: part_of GO:0003162 ! atrioventricular node development -relationship: results_in_acquisition_of_features_of CL:1000410 ! myocyte of atrioventricular node +relationship: RO:0002315 CL:1000410 ! results in acquisition of features of myocyte of atrioventricular node created_by: dph creation_date: 2009-09-29T11:07:06Z @@ -98697,9 +98166,9 @@ def: "The process whose specific outcome is the progression of a pacemaker cell synonym: "pacemaker cell development" BROAD [] is_a: GO:0055013 ! cardiac muscle cell development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of CL:0002072 ! nodal myocyte +intersection_of: RO:0002296 CL:0002072 ! results in development of nodal myocyte relationship: part_of GO:0060920 ! cardiac pacemaker cell differentiation -relationship: results_in_development_of CL:0002072 ! nodal myocyte +relationship: RO:0002296 CL:0002072 ! results in development of nodal myocyte created_by: dph creation_date: 2009-09-29T11:51:55Z @@ -98711,9 +98180,9 @@ def: "The process whose specific outcome is the progression of an atrioventricul synonym: "AV node cell development" EXACT [GOC:mtg_heart] is_a: GO:0060926 ! cardiac pacemaker cell development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:1000410 ! myocyte of atrioventricular node +intersection_of: RO:0002296 CL:1000410 ! results in development of myocyte of atrioventricular node relationship: part_of GO:0060922 ! atrioventricular node cell differentiation -relationship: results_in_development_of CL:1000410 ! myocyte of atrioventricular node +relationship: RO:0002296 CL:1000410 ! results in development of myocyte of atrioventricular node created_by: dph creation_date: 2009-09-29T11:59:26Z @@ -98727,9 +98196,9 @@ synonym: "SAN cell development" EXACT [GOC:BHF, GOC:mtg_cardiac_conduct_nov11] synonym: "sinus node cell development" NARROW [GOC:BHF, GOC:mtg_cardiac_conduct_nov11] is_a: GO:0060926 ! cardiac pacemaker cell development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:1000409 ! myocyte of sinoatrial node +intersection_of: RO:0002296 CL:1000409 ! results in development of myocyte of sinoatrial node relationship: part_of GO:0060921 ! sinoatrial node cell differentiation -relationship: results_in_development_of CL:1000409 ! myocyte of sinoatrial node +relationship: RO:0002296 CL:1000409 ! results in development of myocyte of sinoatrial node created_by: dph creation_date: 2009-09-29T12:05:47Z @@ -98740,9 +98209,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a cell of the His-Purkinje system. These cells form the fibers regulate cardiac muscle contraction in the ventricles." [GOC:mtg_heart] is_a: GO:0055007 ! cardiac muscle cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0010007 ! His-Purkinje system cell +intersection_of: RO:0002315 CL:0010007 ! results in acquisition of features of His-Purkinje system cell relationship: part_of GO:0003164 ! His-Purkinje system development -relationship: results_in_acquisition_of_features_of CL:0010007 ! His-Purkinje system cell +relationship: RO:0002315 CL:0010007 ! results in acquisition of features of His-Purkinje system cell created_by: dph creation_date: 2009-09-29T01:10:32Z @@ -98753,9 +98222,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a His-Purkinje cell over time, from its formation to the mature state. These cells form the fibers that regulate cardiac muscle contraction in the ventricles." [GOC:mtg_heart] is_a: GO:0055006 ! cardiac cell development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:0010007 ! His-Purkinje system cell +intersection_of: RO:0002296 CL:0010007 ! results in development of His-Purkinje system cell relationship: part_of GO:0060932 ! His-Purkinje system cell differentiation -relationship: results_in_development_of CL:0010007 ! His-Purkinje system cell +relationship: RO:0002296 CL:0010007 ! results in development of His-Purkinje system cell created_by: dph creation_date: 2009-09-29T01:15:02Z @@ -98766,8 +98235,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a cardiac fibroblast. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules." [GOC:mtg_heart] is_a: GO:0035051 ! cardiocyte differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002548 ! fibroblast of cardiac tissue -relationship: results_in_acquisition_of_features_of CL:0002548 ! fibroblast of cardiac tissue +intersection_of: RO:0002315 CL:0002548 ! results in acquisition of features of fibroblast of cardiac tissue +relationship: RO:0002315 CL:0002548 ! results in acquisition of features of fibroblast of cardiac tissue created_by: dph creation_date: 2009-09-29T01:20:04Z @@ -98778,9 +98247,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a cardiac fibroblast over time, from its formation to the mature state. A cardiac fibroblast is a connective tissue cell of the heart which secretes an extracellular matrix rich in collagen and other macromolecules." [GOC:mtg_heart] is_a: GO:0055006 ! cardiac cell development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:0002548 ! fibroblast of cardiac tissue +intersection_of: RO:0002296 CL:0002548 ! results in development of fibroblast of cardiac tissue relationship: part_of GO:0060935 ! cardiac fibroblast cell differentiation -relationship: results_in_development_of CL:0002548 ! fibroblast of cardiac tissue +relationship: RO:0002296 CL:0002548 ! results in development of fibroblast of cardiac tissue created_by: dph creation_date: 2009-09-29T01:23:03Z @@ -98793,9 +98262,9 @@ synonym: "heart neuron differentiation" EXACT [GOC:mtg_heart] is_a: GO:0030182 ! neuron differentiation is_a: GO:0035051 ! cardiocyte differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0010022 ! cardiac neuron +intersection_of: RO:0002315 CL:0010022 ! results in acquisition of features of cardiac neuron relationship: part_of GO:0048483 ! autonomic nervous system development -relationship: results_in_acquisition_of_features_of CL:0010022 ! cardiac neuron +relationship: RO:0002315 CL:0010022 ! results in acquisition of features of cardiac neuron created_by: dph creation_date: 2009-09-29T02:45:33Z @@ -98807,8 +98276,8 @@ def: "The process in which a relatively unspecialized cell acquires specialized is_a: GO:0003348 ! cardiac endothelial cell differentiation is_a: GO:0060837 ! blood vessel endothelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0010006 ! cardiac blood vessel endothelial cell -relationship: results_in_acquisition_of_features_of CL:0010006 ! cardiac blood vessel endothelial cell +intersection_of: RO:0002315 CL:0010006 ! results in acquisition of features of cardiac blood vessel endothelial cell +relationship: RO:0002315 CL:0010006 ! results in acquisition of features of cardiac blood vessel endothelial cell created_by: dph creation_date: 2009-09-29T02:48:55Z @@ -98820,8 +98289,8 @@ def: "The process in which a relatively unspecialized cell acquires the speciali is_a: GO:0010001 ! glial cell differentiation is_a: GO:0035051 ! cardiocyte differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0010020 ! cardiac glial cell -relationship: results_in_acquisition_of_features_of CL:0010020 ! cardiac glial cell +intersection_of: RO:0002315 CL:0010020 ! results in acquisition of features of cardiac glial cell +relationship: RO:0002315 CL:0010020 ! results in acquisition of features of cardiac glial cell created_by: dph creation_date: 2009-09-29T03:06:37Z @@ -98833,9 +98302,9 @@ def: "The process aimed at the progression of a cardiac glial cell over time, fr is_a: GO:0021782 ! glial cell development is_a: GO:0055006 ! cardiac cell development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:0010020 ! cardiac glial cell +intersection_of: RO:0002296 CL:0010020 ! results in development of cardiac glial cell relationship: part_of GO:0060950 ! cardiac glial cell differentiation -relationship: results_in_development_of CL:0010020 ! cardiac glial cell +relationship: RO:0002296 CL:0010020 ! results in development of cardiac glial cell created_by: dph creation_date: 2009-09-29T03:09:24Z @@ -98846,9 +98315,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of an endocardial cell. An endocardial cell is a specialized endothelial cell that makes up the endocardium portion of the heart. The endocardium is the innermost layer of tissue of the heart, and lines the heart chambers." [GOC:mtg_heart] is_a: GO:0003348 ! cardiac endothelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002350 ! endocardial cell +intersection_of: RO:0002315 CL:0002350 ! results in acquisition of features of endocardial cell relationship: part_of GO:0003157 ! endocardium development -relationship: results_in_acquisition_of_features_of CL:0002350 ! endocardial cell +relationship: RO:0002315 CL:0002350 ! results in acquisition of features of endocardial cell created_by: dph creation_date: 2009-09-29T03:20:39Z @@ -98860,9 +98329,9 @@ def: "The progression of an endocardial cell over time, from its formation to th is_a: GO:0001885 ! endothelial cell development is_a: GO:0055006 ! cardiac cell development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of CL:0002350 ! endocardial cell +intersection_of: RO:0002296 CL:0002350 ! results in development of endocardial cell relationship: part_of GO:0060956 ! endocardial cell differentiation -relationship: results_in_development_of CL:0002350 ! endocardial cell +relationship: RO:0002296 CL:0002350 ! results in development of endocardial cell created_by: dph creation_date: 2009-09-29T03:26:59Z @@ -98875,9 +98344,9 @@ synonym: "heart neuron development" EXACT [GOC:mtg_heart] is_a: GO:0048666 ! neuron development is_a: GO:0055006 ! cardiac cell development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:0010022 ! cardiac neuron +intersection_of: RO:0002296 CL:0010022 ! results in development of cardiac neuron relationship: part_of GO:0060945 ! cardiac neuron differentiation -relationship: results_in_development_of CL:0010022 ! cardiac neuron +relationship: RO:0002296 CL:0010022 ! results in development of cardiac neuron created_by: dph creation_date: 2009-09-30T10:14:56Z @@ -98917,9 +98386,9 @@ synonym: "heart blood vessel development" EXACT [GOC:mtg_heart] synonym: "heart vasculature development" EXACT [GOC:mtg_heart] is_a: GO:0001568 ! blood vessel development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003498 ! heart blood vessel +intersection_of: RO:0002296 UBERON:0003498 ! results in development of heart blood vessel relationship: part_of GO:0007507 ! heart development -relationship: results_in_development_of UBERON:0003498 ! heart blood vessel +relationship: RO:0002296 UBERON:0003498 ! results in development of heart blood vessel created_by: dph creation_date: 2009-10-06T12:15:23Z @@ -98935,9 +98404,9 @@ synonym: "heart blood vessel morphogenesis" EXACT [GOC:mtg_heart] synonym: "heart vasculature morphogenesis" EXACT [GOC:mtg_heart] is_a: GO:0048514 ! blood vessel morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003498 ! heart blood vessel +intersection_of: RO:0002298 UBERON:0003498 ! results in morphogenesis of heart blood vessel relationship: part_of GO:0060976 ! coronary vasculature development -relationship: results_in_morphogenesis_of UBERON:0003498 ! heart blood vessel +relationship: RO:0002298 UBERON:0003498 ! results in morphogenesis of heart blood vessel created_by: dph creation_date: 2009-10-06T12:28:23Z @@ -99005,8 +98474,8 @@ def: "The process in which the anatomical structures of coronary arteries are ge is_a: GO:0048844 ! artery morphogenesis is_a: GO:0060977 ! coronary vasculature morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001621 ! coronary artery -relationship: results_in_morphogenesis_of UBERON:0001621 ! coronary artery +intersection_of: RO:0002298 UBERON:0001621 ! results in morphogenesis of coronary artery +relationship: RO:0002298 UBERON:0001621 ! results in morphogenesis of coronary artery created_by: dph creation_date: 2009-10-06T02:58:52Z @@ -99027,9 +98496,9 @@ namespace: biological_process def: "Morphogenesis of a kidney. A kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine." [GOC:dph, GOC:mtg_kidney_jan10] is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002113 ! kidney +intersection_of: RO:0002298 UBERON:0002113 ! results in morphogenesis of kidney relationship: part_of GO:0001822 ! kidney development -relationship: results_in_morphogenesis_of UBERON:0002113 ! kidney +relationship: RO:0002298 UBERON:0002113 ! results in morphogenesis of kidney created_by: dph creation_date: 2010-01-19T08:16:55Z @@ -99105,8 +98574,8 @@ def: "The progression of the hepaticobiliary system over time, from its formatio synonym: "hepatobiliary system development" EXACT [GOC:dph] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002423 ! hepatobiliary system -relationship: results_in_development_of UBERON:0002423 ! hepatobiliary system +intersection_of: RO:0002296 UBERON:0002423 ! results in development of hepatobiliary system +relationship: RO:0002296 UBERON:0002423 ! results in development of hepatobiliary system created_by: dph creation_date: 2010-01-22T09:11:59Z @@ -99121,9 +98590,9 @@ synonym: "EHBD development" BROAD [PMID:20614624] synonym: "extrahepatic bile duct development" BROAD [PMID:20614624] is_a: GO:0035295 ! tube development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002394 ! bile duct +intersection_of: RO:0002296 UBERON:0002394 ! results in development of bile duct relationship: part_of GO:0061008 ! hepaticobiliary system development -relationship: results_in_development_of UBERON:0002394 ! bile duct +relationship: RO:0002296 UBERON:0002394 ! results in development of bile duct created_by: dph creation_date: 2010-01-22T09:17:13Z @@ -99134,9 +98603,9 @@ namespace: biological_process def: "The progression of the gallbladder over time, from its initial formation to the mature structure. The gallbladder is a cavitated organ that stores bile." [GOC:dph] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002110 ! gallbladder +intersection_of: RO:0002296 UBERON:0002110 ! results in development of gallbladder relationship: part_of GO:0061008 ! hepaticobiliary system development -relationship: results_in_development_of UBERON:0002110 ! gallbladder +relationship: RO:0002296 UBERON:0002110 ! results in development of gallbladder created_by: dph creation_date: 2010-01-22T09:38:44Z @@ -99147,9 +98616,9 @@ namespace: biological_process def: "The progression of the hepatic duct over time, from its formation to the mature structure. The hepatic duct is the duct that leads from the liver to the common bile duct." [GOC:dph, PMID:20614624] is_a: GO:0061009 ! common bile duct development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001175 ! common hepatic duct +intersection_of: RO:0002296 UBERON:0001175 ! results in development of common hepatic duct relationship: part_of GO:0061008 ! hepaticobiliary system development -relationship: results_in_development_of UBERON:0001175 ! common hepatic duct +relationship: RO:0002296 UBERON:0001175 ! results in development of common hepatic duct created_by: dph creation_date: 2010-01-22T09:44:39Z @@ -99161,9 +98630,9 @@ def: "The process in which a relatively unspecialized cell acquires specialized is_a: GO:0030855 ! epithelial cell differentiation is_a: GO:0048863 ! stem cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000488 ! cholangiocyte +intersection_of: RO:0002315 CL:1000488 ! results in acquisition of features of cholangiocyte relationship: part_of GO:0001889 ! liver development -relationship: results_in_acquisition_of_features_of CL:1000488 ! cholangiocyte +relationship: RO:0002315 CL:1000488 ! results in acquisition of features of cholangiocyte created_by: dph creation_date: 2010-02-02T09:08:03Z @@ -99187,8 +98656,8 @@ synonym: "membrane organization and biogenesis" RELATED [GOC:mah] synonym: "single-organism membrane organization" RELATED [] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0016020 ! membrane -relationship: results_in_organization_of GO:0016020 ! membrane +intersection_of: RO:0002592 GO:0016020 ! results in organization of membrane +relationship: RO:0002592 GO:0016020 ! results in organization of membrane created_by: jl creation_date: 2010-02-08T02:43:11Z @@ -99205,8 +98674,8 @@ synonym: "single-organism membrane fusion" RELATED [] xref: Wikipedia:Lipid_bilayer_fusion is_a: GO:0061024 ! membrane organization intersection_of: GO:0061024 ! membrane organization -intersection_of: results_in_fusion_of GO:0016020 ! membrane -relationship: results_in_fusion_of GO:0016020 ! membrane +intersection_of: RO:0012008 GO:0016020 ! results in fusion of membrane +relationship: RO:0012008 GO:0016020 ! results in fusion of membrane created_by: jl creation_date: 2010-02-08T02:48:06Z @@ -99217,8 +98686,8 @@ namespace: biological_process def: "The process whose specific outcome is the development of the umbilical cord, from its formation to the mature structure. The umbilical cord is an organ or embryonic origin consisting of the 2 umbilical arteries and the one umbilical vein. The umbilical cord connects the cardiovascular system of the fetus to the mother via the placenta." [GOC:BHF, GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002331 ! umbilical cord -relationship: results_in_development_of UBERON:0002331 ! umbilical cord +intersection_of: RO:0002296 UBERON:0002331 ! results in development of umbilical cord +relationship: RO:0002296 UBERON:0002331 ! results in development of umbilical cord created_by: dph creation_date: 2010-02-09T09:09:22Z @@ -99229,9 +98698,9 @@ namespace: biological_process def: "The progression of the eyelid in a camera-type eye from its formation to the mature state. The eyelid is a membranous cover that helps protect and lubricate the eye." [GOC:dph, GOC:yaf] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001711 ! eyelid +intersection_of: RO:0002296 UBERON:0001711 ! results in development of eyelid relationship: part_of GO:0043010 ! camera-type eye development -relationship: results_in_development_of UBERON:0001711 ! eyelid +relationship: RO:0002296 UBERON:0001711 ! results in development of eyelid created_by: dph creation_date: 2010-02-09T09:36:11Z @@ -99255,9 +98724,9 @@ def: "The progression of the visceral serous pericardium from its formation to t synonym: "epicardium development" EXACT [GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002425 ! visceral serous pericardium +intersection_of: RO:0002296 UBERON:0002425 ! results in development of visceral serous pericardium relationship: part_of GO:0060039 ! pericardium development -relationship: results_in_development_of UBERON:0002425 ! visceral serous pericardium +relationship: RO:0002296 UBERON:0002425 ! results in development of visceral serous pericardium created_by: dph creation_date: 2010-02-09T09:52:49Z @@ -99268,9 +98737,9 @@ namespace: biological_process def: "The progression of the olfactory bulb mitral cell layer over time from its initial formation until its mature state. The mitral cell layer is composed of pyramidal neurons whose cell bodies are located between the granule cell layer and the plexiform layer." [GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004186 ! olfactory bulb mitral cell layer +intersection_of: RO:0002296 UBERON:0004186 ! results in development of olfactory bulb mitral cell layer relationship: part_of GO:0021772 ! olfactory bulb development -relationship: results_in_development_of UBERON:0004186 ! olfactory bulb mitral cell layer +relationship: RO:0002296 UBERON:0004186 ! results in development of olfactory bulb mitral cell layer created_by: dph creation_date: 2010-02-09T03:30:23Z @@ -99281,8 +98750,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of cartilage development, the process whose specific outcome is the progression of the cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate." [GOC:dph] is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051216 ! cartilage development -relationship: regulates GO:0051216 ! cartilage development +intersection_of: RO:0002211 GO:0051216 ! regulates (processual) cartilage development +relationship: RO:0002211 GO:0051216 ! regulates (processual) cartilage development created_by: dph creation_date: 2010-02-09T03:41:35Z @@ -99295,8 +98764,8 @@ is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:0061035 ! regulation of cartilage development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051216 ! cartilage development -relationship: positively_regulates GO:0051216 ! cartilage development +intersection_of: RO:0002213 GO:0051216 ! positively regulates cartilage development +relationship: RO:0002213 GO:0051216 ! positively regulates cartilage development created_by: dph creation_date: 2010-02-09T03:41:35Z @@ -99309,8 +98778,8 @@ is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:0061035 ! regulation of cartilage development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051216 ! cartilage development -relationship: negatively_regulates GO:0051216 ! cartilage development +intersection_of: RO:0002212 GO:0051216 ! negatively regulates cartilage development +relationship: RO:0002212 GO:0051216 ! negatively regulates cartilage development created_by: dph creation_date: 2010-02-09T03:41:35Z @@ -99322,9 +98791,9 @@ def: "The process in which anatomical structures of the uterus are generated and is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000995 ! uterus +intersection_of: RO:0002298 UBERON:0000995 ! results in morphogenesis of uterus relationship: part_of GO:0060065 ! uterus development -relationship: results_in_morphogenesis_of UBERON:0000995 ! uterus +relationship: RO:0002298 UBERON:0000995 ! results in morphogenesis of uterus created_by: dph creation_date: 2010-02-22T11:12:35Z @@ -99336,9 +98805,9 @@ def: "The process in which a female gonad is generated and organized." [GOC:BHF, synonym: "ovary morphogenesis" RELATED [GOC:dph, GOC:tb] is_a: GO:0035262 ! gonad morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000992 ! ovary +intersection_of: RO:0002298 UBERON:0000992 ! results in morphogenesis of ovary relationship: part_of GO:0008585 ! female gonad development -relationship: results_in_morphogenesis_of UBERON:0000992 ! ovary +relationship: RO:0002298 UBERON:0000992 ! results in morphogenesis of ovary created_by: dph creation_date: 2010-02-22T11:29:28Z @@ -99349,8 +98818,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of the series of events that restore integrity to a damaged tissue, following an injury." [GOC:BHF, GOC:dph] is_a: GO:1903034 ! regulation of response to wounding intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042060 ! wound healing -relationship: regulates GO:0042060 ! wound healing +intersection_of: RO:0002211 GO:0042060 ! regulates (processual) wound healing +relationship: RO:0002211 GO:0042060 ! regulates (processual) wound healing created_by: dph creation_date: 2010-02-25T10:14:37Z @@ -99363,8 +98832,8 @@ is_a: GO:0032102 ! negative regulation of response to external stimulus is_a: GO:0061041 ! regulation of wound healing is_a: GO:1903035 ! negative regulation of response to wounding intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042060 ! wound healing -relationship: negatively_regulates GO:0042060 ! wound healing +intersection_of: RO:0002212 GO:0042060 ! negatively regulates wound healing +relationship: RO:0002212 GO:0042060 ! negatively regulates wound healing created_by: dph creation_date: 2010-02-25T10:33:30Z @@ -99376,8 +98845,8 @@ def: "Any process that modulates the rate, frequency, or extent of the process i is_a: GO:0060688 ! regulation of morphogenesis of a branching structure is_a: GO:1905330 ! regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060441 ! epithelial tube branching involved in lung morphogenesis -relationship: regulates GO:0060441 ! epithelial tube branching involved in lung morphogenesis +intersection_of: RO:0002211 GO:0060441 ! regulates (processual) epithelial tube branching involved in lung morphogenesis +relationship: RO:0002211 GO:0060441 ! regulates (processual) epithelial tube branching involved in lung morphogenesis created_by: dph creation_date: 2010-02-25T10:41:38Z @@ -99390,8 +98859,8 @@ is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:0061046 ! regulation of branching involved in lung morphogenesis is_a: GO:1905332 ! positive regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060441 ! epithelial tube branching involved in lung morphogenesis -relationship: positively_regulates GO:0060441 ! epithelial tube branching involved in lung morphogenesis +intersection_of: RO:0002213 GO:0060441 ! positively regulates epithelial tube branching involved in lung morphogenesis +relationship: RO:0002213 GO:0060441 ! positively regulates epithelial tube branching involved in lung morphogenesis created_by: dph creation_date: 2010-02-25T10:50:01Z @@ -99404,8 +98873,8 @@ is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:0061046 ! regulation of branching involved in lung morphogenesis is_a: GO:1905331 ! negative regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060441 ! epithelial tube branching involved in lung morphogenesis -relationship: negatively_regulates GO:0060441 ! epithelial tube branching involved in lung morphogenesis +intersection_of: RO:0002212 GO:0060441 ! negatively regulates epithelial tube branching involved in lung morphogenesis +relationship: RO:0002212 GO:0060441 ! negatively regulates epithelial tube branching involved in lung morphogenesis created_by: dph creation_date: 2010-02-25T10:51:31Z @@ -99433,9 +98902,9 @@ def: "Any process that modulates the rate, frequency, or extent of the growth of is_a: GO:0001558 ! regulation of cell growth is_a: GO:0055021 ! regulation of cardiac muscle tissue growth intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061049 ! cell growth involved in cardiac muscle cell development -relationship: regulates GO:0055017 ! cardiac muscle tissue growth -relationship: regulates GO:0061049 ! cell growth involved in cardiac muscle cell development +intersection_of: RO:0002211 GO:0061049 ! regulates (processual) cell growth involved in cardiac muscle cell development +relationship: RO:0002211 GO:0055017 ! regulates (processual) cardiac muscle tissue growth +relationship: RO:0002211 GO:0061049 ! regulates (processual) cell growth involved in cardiac muscle cell development created_by: dph creation_date: 2010-02-25T01:05:16Z @@ -99450,8 +98919,8 @@ is_a: GO:0051155 ! positive regulation of striated muscle cell differentiation is_a: GO:0055023 ! positive regulation of cardiac muscle tissue growth is_a: GO:0061050 ! regulation of cell growth involved in cardiac muscle cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061049 ! cell growth involved in cardiac muscle cell development -relationship: positively_regulates GO:0061049 ! cell growth involved in cardiac muscle cell development +intersection_of: RO:0002213 GO:0061049 ! positively regulates cell growth involved in cardiac muscle cell development +relationship: RO:0002213 GO:0061049 ! positively regulates cell growth involved in cardiac muscle cell development created_by: dph creation_date: 2010-02-25T01:08:08Z @@ -99466,8 +98935,8 @@ is_a: GO:0051154 ! negative regulation of striated muscle cell differentiation is_a: GO:0055022 ! negative regulation of cardiac muscle tissue growth is_a: GO:0061050 ! regulation of cell growth involved in cardiac muscle cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0061049 ! cell growth involved in cardiac muscle cell development -relationship: negatively_regulates GO:0061049 ! cell growth involved in cardiac muscle cell development +intersection_of: RO:0002212 GO:0061049 ! negatively regulates cell growth involved in cardiac muscle cell development +relationship: RO:0002212 GO:0061049 ! negatively regulates cell growth involved in cardiac muscle cell development created_by: dph creation_date: 2010-02-25T01:11:30Z @@ -99478,9 +98947,9 @@ namespace: biological_process def: "The progression of a somite from its initial formation to the mature structure. Somites are mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo." [GOC:dph] is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002329 ! somite +intersection_of: RO:0002296 UBERON:0002329 ! results in development of somite relationship: part_of GO:0009790 ! embryo development -relationship: results_in_development_of UBERON:0002329 ! somite +relationship: RO:0002296 UBERON:0002329 ! results in development of somite created_by: dph creation_date: 2010-03-02T12:05:13Z @@ -99491,9 +98960,9 @@ namespace: biological_process def: "The progression of the dermatome over time, from its initial formation to the mature structure. The dermatome is the portion of a somite that will form skin." [GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004016 ! dermatome +intersection_of: RO:0002296 UBERON:0004016 ! results in development of dermatome relationship: part_of GO:0061053 ! somite development -relationship: results_in_development_of UBERON:0004016 ! dermatome +relationship: RO:0002296 UBERON:0004016 ! results in development of dermatome created_by: dph creation_date: 2010-03-02T12:07:37Z @@ -99504,9 +98973,9 @@ namespace: biological_process def: "The progression of the myotome over time, from its formation to the mature structure. The myotome is the portion of the somite that will give rise to muscle." [GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003082 ! myotome +intersection_of: RO:0002296 UBERON:0003082 ! results in development of myotome relationship: part_of GO:0061053 ! somite development -relationship: results_in_development_of UBERON:0003082 ! myotome +relationship: RO:0002296 UBERON:0003082 ! results in development of myotome created_by: dph creation_date: 2010-03-02T12:11:01Z @@ -99517,9 +98986,9 @@ namespace: biological_process def: "The progression of the sclerotome over time, from its initial formation to the mature structure. The sclerotome is the portion of the somite that will give rise to a vertebra." [GOC:dph] is_a: GO:0060485 ! mesenchyme development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003089 ! sclerotome +intersection_of: RO:0002296 UBERON:0003089 ! results in development of sclerotome relationship: part_of GO:0061053 ! somite development -relationship: results_in_development_of UBERON:0003089 ! sclerotome +relationship: RO:0002296 UBERON:0003089 ! results in development of sclerotome created_by: dph creation_date: 2010-03-02T12:12:40Z @@ -99531,10 +99000,10 @@ def: "The progression of a muscle structure over time, from its formation to its subset: goslim_drosophila is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005090 ! muscle structure +intersection_of: RO:0002296 UBERON:0005090 ! results in development of muscle structure relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa -relationship: results_in_development_of UBERON:0005090 ! muscle structure +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa +relationship: RO:0002296 UBERON:0005090 ! results in development of muscle structure created_by: dph creation_date: 2010-03-09T08:55:14Z @@ -99545,8 +99014,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of nematode larval development, the process whose specific outcome is the progression of the nematode larva over time, from its formation to the mature structure. Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew." [GOC:dph, GOC:kmv] is_a: GO:0048580 ! regulation of post-embryonic development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002119 ! nematode larval development -relationship: regulates GO:0002119 ! nematode larval development +intersection_of: RO:0002211 GO:0002119 ! regulates (processual) nematode larval development +relationship: RO:0002211 GO:0002119 ! regulates (processual) nematode larval development created_by: dph creation_date: 2010-03-11T12:59:21Z @@ -99558,8 +99027,8 @@ def: "Any process that increases the rate, frequency, or extent of nematode larv is_a: GO:0048582 ! positive regulation of post-embryonic development is_a: GO:0061062 ! regulation of nematode larval development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002119 ! nematode larval development -relationship: positively_regulates GO:0002119 ! nematode larval development +intersection_of: RO:0002213 GO:0002119 ! positively regulates nematode larval development +relationship: RO:0002213 GO:0002119 ! positively regulates nematode larval development created_by: dph creation_date: 2010-03-11T01:03:34Z @@ -99571,8 +99040,8 @@ def: "Any process that decreases the rate, frequency, or extent of nematode larv is_a: GO:0048581 ! negative regulation of post-embryonic development is_a: GO:0061062 ! regulation of nematode larval development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002119 ! nematode larval development -relationship: negatively_regulates GO:0002119 ! nematode larval development +intersection_of: RO:0002212 GO:0002119 ! negatively regulates nematode larval development +relationship: RO:0002212 GO:0002119 ! negatively regulates nematode larval development created_by: dph creation_date: 2010-03-11T01:04:39Z @@ -99583,9 +99052,9 @@ namespace: biological_process def: "The progression of the urethra over time from its initial formation to the mature structure. The urethra is a renal system organ that carries urine from the bladder to outside the body." [GOC:dph] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000057 ! urethra +intersection_of: RO:0002296 UBERON:0000057 ! results in development of urethra relationship: part_of GO:0072001 ! renal system development -relationship: results_in_development_of UBERON:0000057 ! urethra +relationship: RO:0002296 UBERON:0000057 ! results in development of urethra created_by: dph creation_date: 2010-03-12T08:24:52Z @@ -99596,8 +99065,8 @@ namespace: biological_process def: "The progression of the male urethra over time from its initial formation to the mature structure. The male urethra is a renal system organ that carries urine from the bladder through the penis to outside the body." [GOC:dph] is_a: GO:0061068 ! urethra development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001333 ! male urethra -relationship: results_in_development_of UBERON:0001333 ! male urethra +intersection_of: RO:0002296 UBERON:0001333 ! results in development of male urethra +relationship: RO:0002296 UBERON:0001333 ! results in development of male urethra created_by: dph creation_date: 2010-03-12T08:28:19Z @@ -99608,8 +99077,8 @@ namespace: biological_process def: "The progression of the female urethra over time from its initial formation to the mature structure. The female urethra is a renal system organ that carries urine from the bladder to outside the body, exiting above the vaginal opening." [GOC:dph] is_a: GO:0061068 ! urethra development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001334 ! female urethra -relationship: results_in_development_of UBERON:0001334 ! female urethra +intersection_of: RO:0002296 UBERON:0001334 ! results in development of female urethra +relationship: RO:0002296 UBERON:0001334 ! results in development of female urethra created_by: dph creation_date: 2010-03-12T08:29:43Z @@ -99621,9 +99090,9 @@ def: "The progression of the urethra epithelium over time from its initial forma is_a: GO:0035295 ! tube development is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002325 ! epithelium of urethra +intersection_of: RO:0002296 UBERON:0002325 ! results in development of epithelium of urethra relationship: part_of GO:0061068 ! urethra development -relationship: results_in_development_of UBERON:0002325 ! epithelium of urethra +relationship: RO:0002296 UBERON:0002325 ! results in development of epithelium of urethra created_by: dph creation_date: 2010-03-12T08:36:53Z @@ -99634,9 +99103,9 @@ namespace: biological_process def: "The process in which the iris is generated and organized. The iris is an anatomical structure in the eye whose opening forms the pupil. The iris is responsible for controlling the diameter and size of the pupil and the amount of light reaching the retina." [GOC:dph] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001769 ! iris +intersection_of: RO:0002298 UBERON:0001769 ! results in morphogenesis of iris relationship: part_of GO:0048593 ! camera-type eye morphogenesis -relationship: results_in_morphogenesis_of UBERON:0001769 ! iris +relationship: RO:0002298 UBERON:0001769 ! results in morphogenesis of iris created_by: dph creation_date: 2010-03-16T10:48:42Z @@ -99647,9 +99116,9 @@ namespace: biological_process def: "The process in which the ciliary body generated and organized. The ciliary body is the circumferential tissue inside the eye composed of the ciliary muscle and ciliary processes." [GOC:dph] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001775 ! ciliary body +intersection_of: RO:0002298 UBERON:0001775 ! results in morphogenesis of ciliary body relationship: part_of GO:0048593 ! camera-type eye morphogenesis -relationship: results_in_morphogenesis_of UBERON:0001775 ! ciliary body +relationship: RO:0002298 UBERON:0001775 ! results in morphogenesis of ciliary body created_by: dph creation_date: 2010-03-16T10:55:19Z @@ -99660,8 +99129,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of neural retina development, the progression of the neural retina over time from its initial formation to the mature structure. The neural retina is the part of the retina that contains neurons and photoreceptor cells." [GOC:dph] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003407 ! neural retina development -relationship: regulates GO:0003407 ! neural retina development +intersection_of: RO:0002211 GO:0003407 ! regulates (processual) neural retina development +relationship: RO:0002211 GO:0003407 ! regulates (processual) neural retina development created_by: dph creation_date: 2010-03-16T11:47:05Z @@ -99673,9 +99142,9 @@ def: "Any process that increases the rate, frequency, or extent of neural retina is_a: GO:0061074 ! regulation of neural retina development is_a: GO:1902868 ! positive regulation of retina development in camera-type eye intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003407 ! neural retina development -relationship: positively_regulates GO:0003407 ! neural retina development -relationship: positively_regulates GO:0060041 ! retina development in camera-type eye +intersection_of: RO:0002213 GO:0003407 ! positively regulates neural retina development +relationship: RO:0002213 GO:0003407 ! positively regulates neural retina development +relationship: RO:0002213 GO:0060041 ! positively regulates retina development in camera-type eye created_by: dph creation_date: 2010-03-16T11:59:48Z @@ -99687,9 +99156,9 @@ def: "Any process that decreases the rate, frequency, or extent of neural retina is_a: GO:0061074 ! regulation of neural retina development is_a: GO:1902867 ! negative regulation of retina development in camera-type eye intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003407 ! neural retina development -relationship: negatively_regulates GO:0003407 ! neural retina development -relationship: negatively_regulates GO:0060041 ! retina development in camera-type eye +intersection_of: RO:0002212 GO:0003407 ! negatively regulates neural retina development +relationship: RO:0002212 GO:0003407 ! negatively regulates neural retina development +relationship: RO:0002212 GO:0060041 ! negatively regulates retina development in camera-type eye created_by: dph creation_date: 2010-03-16T12:46:11Z @@ -99700,9 +99169,9 @@ namespace: biological_process def: "The progression of the left horn of the sinus venosus from its initial formation to the mature structure." [GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005091 ! left horn of sinus venosus +intersection_of: RO:0002296 UBERON:0005091 ! results in development of left horn of sinus venosus relationship: part_of GO:0003235 ! sinus venosus development -relationship: results_in_development_of UBERON:0005091 ! left horn of sinus venosus +relationship: RO:0002296 UBERON:0005091 ! results in development of left horn of sinus venosus created_by: dph creation_date: 2010-04-08T02:40:27Z @@ -99713,9 +99182,9 @@ namespace: biological_process def: "The progression of the right horn of the sinus venosus from its formation to the mature structure." [GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005092 ! right horn of sinus venosus +intersection_of: RO:0002296 UBERON:0005092 ! results in development of right horn of sinus venosus relationship: part_of GO:0003235 ! sinus venosus development -relationship: results_in_development_of UBERON:0005092 ! right horn of sinus venosus +relationship: RO:0002296 UBERON:0005092 ! results in development of right horn of sinus venosus created_by: dph creation_date: 2010-04-08T02:45:10Z @@ -99727,8 +99196,8 @@ def: "Any process that modulates the rate, frequency, or extent of the productio synonym: "positive regulation of myeloid cell cytokine production involved in immune response" RELATED [GOC:dph] is_a: GO:0002720 ! positive regulation of cytokine production involved in immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061082 ! myeloid leukocyte cytokine production -relationship: positively_regulates GO:0061082 ! myeloid leukocyte cytokine production +intersection_of: RO:0002213 GO:0061082 ! positively regulates myeloid leukocyte cytokine production +relationship: RO:0002213 GO:0061082 ! positively regulates myeloid leukocyte cytokine production created_by: dph creation_date: 2010-04-13T11:26:41Z @@ -99748,13 +99217,13 @@ id: GO:0061097 name: regulation of protein tyrosine kinase activity namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of protein tyrosine kinase activity." [GOC:dph, GOC:tb] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate is_a: GO:0045859 ! regulation of protein kinase activity is_a: GO:0050730 ! regulation of peptidyl-tyrosine phosphorylation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0004713 ! protein tyrosine kinase activity -relationship: regulates GO:0004713 ! protein tyrosine kinase activity -relationship: regulates GO:0018108 ! peptidyl-tyrosine phosphorylation +intersection_of: RO:0002211 GO:0004713 ! regulates (processual) protein tyrosine kinase activity +relationship: RO:0002211 GO:0004713 ! regulates (processual) protein tyrosine kinase activity +relationship: RO:0002211 GO:0018108 ! regulates (processual) peptidyl-tyrosine phosphorylation created_by: dph creation_date: 2010-04-26T02:34:53Z @@ -99763,13 +99232,13 @@ id: GO:0061098 name: positive regulation of protein tyrosine kinase activity namespace: biological_process def: "Any process that increases the rate, frequency, or extent of protein tyrosine kinase activity." [GOC:dph, GOC:tb] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate is_a: GO:0045860 ! positive regulation of protein kinase activity is_a: GO:0050731 ! positive regulation of peptidyl-tyrosine phosphorylation is_a: GO:0061097 ! regulation of protein tyrosine kinase activity intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0004713 ! protein tyrosine kinase activity -relationship: positively_regulates GO:0004713 ! protein tyrosine kinase activity +intersection_of: RO:0002213 GO:0004713 ! positively regulates protein tyrosine kinase activity +relationship: RO:0002213 GO:0004713 ! positively regulates protein tyrosine kinase activity created_by: dph creation_date: 2010-04-26T02:34:53Z @@ -99778,13 +99247,13 @@ id: GO:0061099 name: negative regulation of protein tyrosine kinase activity namespace: biological_process def: "Any process that decreases the rate, frequency, or extent of protein tyrosine kinase activity." [GOC:dph, GOC:tb] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate is_a: GO:0006469 ! negative regulation of protein kinase activity is_a: GO:0050732 ! negative regulation of peptidyl-tyrosine phosphorylation is_a: GO:0061097 ! regulation of protein tyrosine kinase activity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0004713 ! protein tyrosine kinase activity -relationship: negatively_regulates GO:0004713 ! protein tyrosine kinase activity +intersection_of: RO:0002212 GO:0004713 ! negatively regulates protein tyrosine kinase activity +relationship: RO:0002212 GO:0004713 ! negatively regulates protein tyrosine kinase activity created_by: dph creation_date: 2010-04-26T02:34:53Z @@ -99796,8 +99265,8 @@ def: "The process in which a relatively unspecialized cell acquires specialized is_a: GO:0061101 ! neuroendocrine cell differentiation is_a: GO:0061140 ! lung secretory cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000223 ! lung neuroendocrine cell -relationship: results_in_acquisition_of_features_of CL:1000223 ! lung neuroendocrine cell +intersection_of: RO:0002315 CL:1000223 ! results in acquisition of features of lung neuroendocrine cell +relationship: RO:0002315 CL:1000223 ! results in acquisition of features of lung neuroendocrine cell created_by: dph creation_date: 2010-04-27T03:28:46Z @@ -99809,8 +99278,8 @@ def: "The process in which a relatively unspecialized cell acquires specialized is_a: GO:0030182 ! neuron differentiation is_a: GO:0060563 ! neuroepithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000165 ! neuroendocrine cell -relationship: results_in_acquisition_of_features_of CL:0000165 ! neuroendocrine cell +intersection_of: RO:0002315 CL:0000165 ! results in acquisition of features of neuroendocrine cell +relationship: RO:0002315 CL:0000165 ! results in acquisition of features of neuroendocrine cell created_by: dph creation_date: 2010-04-28T09:42:20Z @@ -99823,9 +99292,9 @@ synonym: "gastric neuroendocrine cell differentiation" RELATED [GOC:dph] is_a: GO:0035883 ! enteroendocrine cell differentiation is_a: GO:0061101 ! neuroendocrine cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000222 ! stomach neuroendocrine cell +intersection_of: RO:0002315 CL:1000222 ! results in acquisition of features of stomach neuroendocrine cell relationship: part_of GO:0062094 ! stomach development -relationship: results_in_acquisition_of_features_of CL:1000222 ! stomach neuroendocrine cell +relationship: RO:0002315 CL:1000222 ! results in acquisition of features of stomach neuroendocrine cell created_by: dph creation_date: 2010-04-28T09:47:07Z @@ -99837,9 +99306,9 @@ def: "The process in which a relatively unspecialized cell acquires specialized is_a: GO:0002067 ! glandular epithelial cell differentiation is_a: GO:0061101 ! neuroendocrine cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000426 ! chromaffin cell of adrenal gland +intersection_of: RO:0002315 CL:1000426 ! results in acquisition of features of chromaffin cell of adrenal gland relationship: part_of GO:0030325 ! adrenal gland development -relationship: results_in_acquisition_of_features_of CL:1000426 ! chromaffin cell of adrenal gland +relationship: RO:0002315 CL:1000426 ! results in acquisition of features of chromaffin cell of adrenal gland created_by: dph creation_date: 2010-04-29T08:27:53Z @@ -99851,8 +99320,8 @@ def: "Any process that modulates the rate, frequency or extent of the differenti is_a: GO:0030856 ! regulation of epithelial cell differentiation is_a: GO:0045664 ! regulation of neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061102 ! stomach neuroendocrine cell differentiation -relationship: regulates GO:0061102 ! stomach neuroendocrine cell differentiation +intersection_of: RO:0002211 GO:0061102 ! regulates (processual) stomach neuroendocrine cell differentiation +relationship: RO:0002211 GO:0061102 ! regulates (processual) stomach neuroendocrine cell differentiation created_by: dph creation_date: 2010-04-29T12:19:37Z @@ -99865,8 +99334,8 @@ is_a: GO:0002085 ! inhibition of neuroepithelial cell differentiation is_a: GO:0045665 ! negative regulation of neuron differentiation is_a: GO:0061105 ! regulation of stomach neuroendocrine cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0061102 ! stomach neuroendocrine cell differentiation -relationship: negatively_regulates GO:0061102 ! stomach neuroendocrine cell differentiation +intersection_of: RO:0002212 GO:0061102 ! negatively regulates stomach neuroendocrine cell differentiation +relationship: RO:0002212 GO:0061102 ! negatively regulates stomach neuroendocrine cell differentiation created_by: dph creation_date: 2010-04-29T12:23:05Z @@ -99878,8 +99347,8 @@ def: "The progression of the seminal vesicle over time, from its formation to th is_a: GO:0048608 ! reproductive structure development is_a: GO:0048732 ! gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000998 ! seminal vesicle -relationship: results_in_development_of UBERON:0000998 ! seminal vesicle +intersection_of: RO:0002296 UBERON:0000998 ! results in development of seminal vesicle +relationship: RO:0002296 UBERON:0000998 ! results in development of seminal vesicle created_by: dph creation_date: 2010-04-30T10:17:30Z @@ -99892,9 +99361,9 @@ is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0035295 ! tube development is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004805 ! seminal vesicle epithelium +intersection_of: RO:0002296 UBERON:0004805 ! results in development of seminal vesicle epithelium relationship: part_of GO:0061107 ! seminal vesicle development -relationship: results_in_development_of UBERON:0004805 ! seminal vesicle epithelium +relationship: RO:0002296 UBERON:0004805 ! results in development of seminal vesicle epithelium created_by: dph creation_date: 2010-04-30T10:19:54Z @@ -99906,8 +99375,8 @@ def: "A process that is carried out at the cellular level which results in the a synonym: "dense core granule organisation" EXACT [GOC:mah] is_a: GO:0033363 ! secretory granule organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0031045 ! dense core granule -relationship: results_in_organization_of GO:0031045 ! dense core granule +intersection_of: RO:0002592 GO:0031045 ! results in organization of dense core granule +relationship: RO:0002592 GO:0031045 ! results in organization of dense core granule created_by: dph creation_date: 2010-05-01T09:34:37Z @@ -99932,9 +99401,9 @@ namespace: biological_process def: "Morphogenesis of the pancreas. Morphogenesis is the process in which anatomical structures are generated and organized." [GOC:dph] is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001264 ! pancreas +intersection_of: RO:0002298 UBERON:0001264 ! results in morphogenesis of pancreas relationship: part_of GO:0031016 ! pancreas development -relationship: results_in_morphogenesis_of UBERON:0001264 ! pancreas +relationship: RO:0002298 UBERON:0001264 ! results in morphogenesis of pancreas created_by: dph creation_date: 2010-05-05T11:55:30Z @@ -99958,8 +99427,8 @@ def: "Any process that decreases the rate or extent of heart growth. Heart growt is_a: GO:0046621 ! negative regulation of organ growth is_a: GO:0060420 ! regulation of heart growth intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060419 ! heart growth -relationship: negatively_regulates GO:0060419 ! heart growth +intersection_of: RO:0002212 GO:0060419 ! negatively regulates heart growth +relationship: RO:0002212 GO:0060419 ! negatively regulates heart growth created_by: dph creation_date: 2010-05-17T07:31:28Z @@ -99972,8 +99441,8 @@ is_a: GO:0048645 ! animal organ formation is_a: GO:0061114 ! branching involved in pancreas morphogenesis is_a: GO:0072175 ! epithelial tube formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003922 ! pancreatic epithelial bud -relationship: results_in_formation_of_anatomical_entity UBERON:0003922 ! pancreatic epithelial bud +intersection_of: RO:0002297 UBERON:0003922 ! results in formation of anatomical entity pancreatic epithelial bud +relationship: RO:0002297 UBERON:0003922 ! results in formation of anatomical entity pancreatic epithelial bud created_by: dph creation_date: 2010-05-17T09:33:40Z @@ -99994,8 +99463,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a lung secretory cell. A lung secretory cell is a specialized epithelial cell of the lung that contains large secretory granules in its apical part." [GOC:dph] is_a: GO:0060487 ! lung epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000272 ! lung secretory cell -relationship: results_in_acquisition_of_features_of CL:1000272 ! lung secretory cell +intersection_of: RO:0002315 CL:1000272 ! results in acquisition of features of lung secretory cell +relationship: RO:0002315 CL:1000272 ! results in acquisition of features of lung secretory cell created_by: dph creation_date: 2010-05-25T09:28:53Z @@ -100006,8 +99475,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a lung ciliated cell. A lung ciliated cell is a specialized lung epithelial cell that contains cilia for moving substances released from lung secretory cells." [GOC:cilia, GOC:dph, GOC:krc] is_a: GO:0060487 ! lung epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000271 ! lung ciliated cell -relationship: results_in_acquisition_of_features_of CL:1000271 ! lung ciliated cell +intersection_of: RO:0002315 CL:1000271 ! results in acquisition of features of lung ciliated cell +relationship: RO:0002315 CL:1000271 ! results in acquisition of features of lung ciliated cell created_by: dph creation_date: 2010-05-25T09:31:14Z @@ -100018,9 +99487,9 @@ namespace: biological_process def: "The progression of a primary alveolar septum over time, from its formation to the mature structure. A primary alveolar septum is a specialized epithelium that surrounds the saccule as it forms." [GOC:dph] is_a: GO:0060428 ! lung epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005314 ! alveolar primary septum +intersection_of: RO:0002296 UBERON:0005314 ! results in development of alveolar primary septum relationship: part_of GO:0060430 ! lung saccule development -relationship: results_in_development_of UBERON:0005314 ! alveolar primary septum +relationship: RO:0002296 UBERON:0005314 ! results in development of alveolar primary septum created_by: dph creation_date: 2010-05-25T10:21:27Z @@ -100031,9 +99500,9 @@ namespace: biological_process def: "The progression of a secondary alveolar septum over time, from its formation to the mature structure. A secondary alveolar septum is a specialized epithelium that subdivides the initial saccule." [GOC:dph] is_a: GO:0060428 ! lung epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005315 ! alveolar secondary septum +intersection_of: RO:0002296 UBERON:0005315 ! results in development of alveolar secondary septum relationship: part_of GO:0060430 ! lung saccule development -relationship: results_in_development_of UBERON:0005315 ! alveolar secondary septum +relationship: RO:0002296 UBERON:0005315 ! results in development of alveolar secondary septum created_by: dph creation_date: 2010-05-25T10:43:55Z @@ -100044,9 +99513,9 @@ namespace: biological_process def: "The process in which a Peyer's patch is generated and organized. Peyer's patches are typically found as nodules associated with gut epithelium with distinct internal structures including B- and T-zones for the activation of lymphocytes." [GOC:dph] is_a: GO:0048729 ! tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001211 ! Peyer's patch +intersection_of: RO:0002298 UBERON:0001211 ! results in morphogenesis of Peyer's patch relationship: part_of GO:0048541 ! Peyer's patch development -relationship: results_in_morphogenesis_of UBERON:0001211 ! Peyer's patch +relationship: RO:0002298 UBERON:0001211 ! results in morphogenesis of Peyer's patch created_by: dph creation_date: 2010-05-26T06:46:23Z @@ -100057,9 +99526,9 @@ namespace: biological_process def: "The progression of the endocardial endothelium over time, from its initial formation to the mature structure. The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers." [GOC:dph] is_a: GO:0003158 ! endothelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005316 ! endocardial endothelium +intersection_of: RO:0002296 UBERON:0005316 ! results in development of endocardial endothelium relationship: part_of GO:0003157 ! endocardium development -relationship: results_in_development_of UBERON:0005316 ! endocardial endothelium +relationship: RO:0002296 UBERON:0005316 ! results in development of endocardial endothelium created_by: dph creation_date: 2010-06-03T09:15:31Z @@ -100083,9 +99552,9 @@ namespace: biological_process def: "The progression of the trachea submucosa over time from its formation to the mature structure. The trachea submucosa is made up of the glands and elastic tissue that lie under the mucosa in the trachea." [GOC:dph, GOC:yaf] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002202 ! submucosa of trachea +intersection_of: RO:0002296 UBERON:0002202 ! results in development of submucosa of trachea relationship: part_of GO:0060438 ! trachea development -relationship: results_in_development_of UBERON:0002202 ! submucosa of trachea +relationship: RO:0002296 UBERON:0002202 ! results in development of submucosa of trachea created_by: dph creation_date: 2010-06-07T09:58:40Z @@ -100096,9 +99565,9 @@ namespace: biological_process def: "The progression of a trachea gland over time, from its formation to the mature structure. Trachea glands are found under the mucus of the trachea and secrete mucus, and agents that help protect the lung from injury and infection." [GOC:dph] is_a: GO:0048732 ! gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005203 ! trachea gland +intersection_of: RO:0002296 UBERON:0005203 ! results in development of trachea gland relationship: part_of GO:0061152 ! trachea submucosa development -relationship: results_in_development_of UBERON:0005203 ! trachea gland +relationship: RO:0002296 UBERON:0005203 ! results in development of trachea gland created_by: dph creation_date: 2010-06-07T10:10:51Z @@ -100110,8 +99579,8 @@ def: "The process in which the anatomical structures of a tube are generated and is_a: GO:0003159 ! morphogenesis of an endothelium is_a: GO:0060562 ! epithelial tube morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003915 ! endothelial tube -relationship: results_in_morphogenesis_of UBERON:0003915 ! endothelial tube +intersection_of: RO:0002298 UBERON:0003915 ! results in morphogenesis of endothelial tube +relationship: RO:0002298 UBERON:0003915 ! results in morphogenesis of endothelial tube created_by: dph creation_date: 2010-06-15T09:05:00Z @@ -100122,9 +99591,9 @@ namespace: biological_process def: "The process in which the anatomical structures of a tube are generated and organized from the pulmonary artery endothelium. An pulmonary artery endothelium is an epithelium that lines the pulmonary artery." [GOC:dph, GOC:yaf] is_a: GO:0061154 ! endothelial tube morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005317 ! pulmonary artery endothelium +intersection_of: RO:0002298 UBERON:0005317 ! results in morphogenesis of pulmonary artery endothelium relationship: part_of GO:0061156 ! pulmonary artery morphogenesis -relationship: results_in_morphogenesis_of UBERON:0005317 ! pulmonary artery endothelium +relationship: RO:0002298 UBERON:0005317 ! results in morphogenesis of pulmonary artery endothelium created_by: dph creation_date: 2010-06-15T09:09:04Z @@ -100135,8 +99604,8 @@ namespace: biological_process def: "The process in which the anatomical structures of the pulmonary artery are generated and organized. The pulmonary artery is the artery that carries blood from the heart to the lungs." [GOC:dph, GOC:yaf] is_a: GO:0048844 ! artery morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002012 ! pulmonary artery -relationship: results_in_morphogenesis_of UBERON:0002012 ! pulmonary artery +intersection_of: RO:0002298 UBERON:0002012 ! results in morphogenesis of pulmonary artery +relationship: RO:0002298 UBERON:0002012 ! results in morphogenesis of pulmonary artery created_by: dph creation_date: 2010-06-15T09:13:47Z @@ -100147,9 +99616,9 @@ namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of hair follicle placode formation, the developmental process in which a hair placode forms. An hair follicle placode is a thickening of the ectoderm that will give rise to the hair follicle bud." [GOC:dph] is_a: GO:0022603 ! regulation of anatomical structure morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060789 ! hair follicle placode formation -relationship: regulates GO:0009653 ! anatomical structure morphogenesis -relationship: regulates GO:0060789 ! hair follicle placode formation +intersection_of: RO:0002211 GO:0060789 ! regulates (processual) hair follicle placode formation +relationship: RO:0002211 GO:0009653 ! regulates (processual) anatomical structure morphogenesis +relationship: RO:0002211 GO:0060789 ! regulates (processual) hair follicle placode formation created_by: dph creation_date: 2010-06-25T01:03:29Z @@ -100161,8 +99630,8 @@ def: "Any process that increases the rate, frequency, or extent of hair follicle is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0061168 ! regulation of hair follicle placode formation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060789 ! hair follicle placode formation -relationship: positively_regulates GO:0060789 ! hair follicle placode formation +intersection_of: RO:0002213 GO:0060789 ! positively regulates hair follicle placode formation +relationship: RO:0002213 GO:0060789 ! positively regulates hair follicle placode formation created_by: dph creation_date: 2010-06-25T01:08:50Z @@ -100174,9 +99643,9 @@ def: "Any process that decreases the rate, frequency, or extent of hair follicle is_a: GO:0051799 ! negative regulation of hair follicle development is_a: GO:0061168 ! regulation of hair follicle placode formation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060789 ! hair follicle placode formation -relationship: negatively_regulates GO:0001942 ! hair follicle development -relationship: negatively_regulates GO:0060789 ! hair follicle placode formation +intersection_of: RO:0002212 GO:0060789 ! negatively regulates hair follicle placode formation +relationship: RO:0002212 GO:0001942 ! negatively regulates hair follicle development +relationship: RO:0002212 GO:0060789 ! negatively regulates hair follicle placode formation created_by: dph creation_date: 2010-06-25T01:10:48Z @@ -100188,9 +99657,9 @@ def: "Any process that modulates the frequency, rate or extent of the regulated synonym: "regulation of insulin secretion in response to glucose" EXACT [GOC:dph] is_a: GO:0050796 ! regulation of insulin secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035773 ! insulin secretion involved in cellular response to glucose stimulus -relationship: regulates GO:0035773 ! insulin secretion involved in cellular response to glucose stimulus -relationship: regulates GO:0051641 ! cellular localization +intersection_of: RO:0002211 GO:0035773 ! regulates (processual) insulin secretion involved in cellular response to glucose stimulus +relationship: RO:0002211 GO:0035773 ! regulates (processual) insulin secretion involved in cellular response to glucose stimulus +relationship: RO:0002211 GO:0051641 ! regulates (processual) cellular localization created_by: dph creation_date: 2010-07-13T09:38:42Z @@ -100205,9 +99674,9 @@ is_a: GO:0046676 ! negative regulation of insulin secretion is_a: GO:0048585 ! negative regulation of response to stimulus is_a: GO:0061178 ! regulation of insulin secretion involved in cellular response to glucose stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035773 ! insulin secretion involved in cellular response to glucose stimulus -relationship: negatively_regulates GO:0035773 ! insulin secretion involved in cellular response to glucose stimulus -relationship: negatively_regulates GO:0050896 ! response to stimulus +intersection_of: RO:0002212 GO:0035773 ! negatively regulates insulin secretion involved in cellular response to glucose stimulus +relationship: RO:0002212 GO:0035773 ! negatively regulates insulin secretion involved in cellular response to glucose stimulus +relationship: RO:0002212 GO:0050896 ! negatively regulates response to stimulus created_by: dph creation_date: 2010-07-13T09:41:46Z @@ -100219,9 +99688,9 @@ def: "The process whose specific outcome is the progression of the mammary gland synonym: "breast epithelium development" EXACT [GOC:dph] is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0008367 ! breast epithelium +intersection_of: RO:0002296 UBERON:0008367 ! results in development of breast epithelium relationship: part_of GO:0030879 ! mammary gland development -relationship: results_in_development_of UBERON:0008367 ! breast epithelium +relationship: RO:0002296 UBERON:0008367 ! results in development of breast epithelium created_by: dph creation_date: 2010-07-14T08:18:24Z @@ -100233,8 +99702,8 @@ def: "Any process that modulates the rate, frequency, or extent of the process w is_a: GO:0032330 ! regulation of chondrocyte differentiation is_a: GO:0060284 ! regulation of cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002063 ! chondrocyte development -relationship: regulates GO:0002063 ! chondrocyte development +intersection_of: RO:0002211 GO:0002063 ! regulates (processual) chondrocyte development +relationship: RO:0002211 GO:0002063 ! regulates (processual) chondrocyte development created_by: dph creation_date: 2010-07-14T08:28:52Z @@ -100247,8 +99716,8 @@ is_a: GO:0010721 ! negative regulation of cell development is_a: GO:0032331 ! negative regulation of chondrocyte differentiation is_a: GO:0061181 ! regulation of chondrocyte development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002063 ! chondrocyte development -relationship: negatively_regulates GO:0002063 ! chondrocyte development +intersection_of: RO:0002212 GO:0002063 ! negatively regulates chondrocyte development +relationship: RO:0002212 GO:0002063 ! negatively regulates chondrocyte development created_by: dph creation_date: 2010-07-14T08:33:05Z @@ -100259,8 +99728,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of the progression of the dermatome over time, from its initial formation to the mature structure. The dermatome is the portion of a somite that will form skin." [GOC:BHF, GOC:dph] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061054 ! dermatome development -relationship: regulates GO:0061054 ! dermatome development +intersection_of: RO:0002211 GO:0061054 ! regulates (processual) dermatome development +relationship: RO:0002211 GO:0061054 ! regulates (processual) dermatome development created_by: dph creation_date: 2010-07-14T08:40:26Z @@ -100272,8 +99741,8 @@ def: "Any process that increases the rate, frequency, or extent of the progressi is_a: GO:0040019 ! positive regulation of embryonic development is_a: GO:0061183 ! regulation of dermatome development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061054 ! dermatome development -relationship: positively_regulates GO:0061054 ! dermatome development +intersection_of: RO:0002213 GO:0061054 ! positively regulates dermatome development +relationship: RO:0002213 GO:0061054 ! positively regulates dermatome development created_by: dph creation_date: 2010-07-14T08:42:03Z @@ -100285,8 +99754,8 @@ def: "Any process that decreases the rate, frequency, or extent of the progressi is_a: GO:0045992 ! negative regulation of embryonic development is_a: GO:0061183 ! regulation of dermatome development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0061054 ! dermatome development -relationship: negatively_regulates GO:0061054 ! dermatome development +intersection_of: RO:0002212 GO:0061054 ! negatively regulates dermatome development +relationship: RO:0002212 GO:0061054 ! negatively regulates dermatome development created_by: dph creation_date: 2010-07-14T08:43:08Z @@ -100298,8 +99767,8 @@ def: "Any process that increases the rate, frequency, or extent of the progressi is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0061190 ! regulation of sclerotome development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061056 ! sclerotome development -relationship: positively_regulates GO:0061056 ! sclerotome development +intersection_of: RO:0002213 GO:0061056 ! positively regulates sclerotome development +relationship: RO:0002213 GO:0061056 ! positively regulates sclerotome development created_by: dph creation_date: 2010-07-14T09:17:23Z @@ -100310,8 +99779,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of the progression of the sclerotome over time, from its initial formation to the mature structure. The sclerotome is the portion of the somite that will give rise to a vertebra." [GOC:dph] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061056 ! sclerotome development -relationship: regulates GO:0061056 ! sclerotome development +intersection_of: RO:0002211 GO:0061056 ! regulates (processual) sclerotome development +relationship: RO:0002211 GO:0061056 ! regulates (processual) sclerotome development created_by: dph creation_date: 2010-07-14T09:19:47Z @@ -100322,9 +99791,9 @@ namespace: biological_process def: "The progression of the taste bud over time, from its formation to the mature state. The taste bud is a specialized area of the tongue that contains taste receptors." [GOC:dph] is_a: GO:0007423 ! sensory organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001727 ! taste bud +intersection_of: RO:0002296 UBERON:0001727 ! results in development of taste bud relationship: part_of GO:0043586 ! tongue development -relationship: results_in_development_of UBERON:0001727 ! taste bud +relationship: RO:0002296 UBERON:0001727 ! results in development of taste bud created_by: dph creation_date: 2010-07-27T10:55:08Z @@ -100335,10 +99804,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the taste bud are generated and organized. The taste bud is a specialized area of the tongue that contains taste receptors." [GOC:dph] is_a: GO:0090596 ! sensory organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001727 ! taste bud +intersection_of: RO:0002298 UBERON:0001727 ! results in morphogenesis of taste bud relationship: part_of GO:0043587 ! tongue morphogenesis relationship: part_of GO:0061193 ! taste bud development -relationship: results_in_morphogenesis_of UBERON:0001727 ! taste bud +relationship: RO:0002298 UBERON:0001727 ! results in morphogenesis of taste bud created_by: dph creation_date: 2010-07-27T11:01:31Z @@ -100349,9 +99818,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of the taste bud from unspecified parts. The taste bud is a specialized area of the tongue that contains taste receptors." [GOC:dph] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001727 ! taste bud +intersection_of: RO:0002297 UBERON:0001727 ! results in formation of anatomical entity taste bud relationship: part_of GO:0061194 ! taste bud morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001727 ! taste bud +relationship: RO:0002297 UBERON:0001727 ! results in formation of anatomical entity taste bud created_by: dph creation_date: 2010-07-27T12:22:26Z @@ -100362,9 +99831,9 @@ namespace: biological_process def: "The progression of the fungiform papilla over time, from its formation to the mature structure. The fungiform papilla is a mushroom-shaped papilla of the tongue." [GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002448 ! fungiform papilla +intersection_of: RO:0002296 UBERON:0002448 ! results in development of fungiform papilla relationship: part_of GO:0043586 ! tongue development -relationship: results_in_development_of UBERON:0002448 ! fungiform papilla +relationship: RO:0002296 UBERON:0002448 ! results in development of fungiform papilla created_by: dph creation_date: 2010-07-27T12:23:48Z @@ -100375,10 +99844,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the fungiform papilla are generated and organized. The fungiform papilla is a mushroom-shaped papilla of the tongue." [GOC:dph] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002448 ! fungiform papilla +intersection_of: RO:0002298 UBERON:0002448 ! results in morphogenesis of fungiform papilla relationship: part_of GO:0043587 ! tongue morphogenesis relationship: part_of GO:0061196 ! fungiform papilla development -relationship: results_in_morphogenesis_of UBERON:0002448 ! fungiform papilla +relationship: RO:0002298 UBERON:0002448 ! results in morphogenesis of fungiform papilla created_by: dph creation_date: 2010-07-27T12:26:40Z @@ -100389,9 +99858,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a spongiform papilla from unspecified parts. The fungiform papilla is a mushroom-shaped papilla of the tongue." [GOC:dph] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002448 ! fungiform papilla +intersection_of: RO:0002297 UBERON:0002448 ! results in formation of anatomical entity fungiform papilla relationship: part_of GO:0061197 ! fungiform papilla morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002448 ! fungiform papilla +relationship: RO:0002297 UBERON:0002448 ! results in formation of anatomical entity fungiform papilla created_by: dph creation_date: 2010-07-27T12:29:03Z @@ -100404,8 +99873,8 @@ synonym: "Mullerian duct development" EXACT [GOC:dph] is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0035295 ! tube development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003890 ! Mullerian duct -relationship: results_in_development_of UBERON:0003890 ! Mullerian duct +intersection_of: RO:0002296 UBERON:0003890 ! results in development of Mullerian duct +relationship: RO:0002296 UBERON:0003890 ! results in development of Mullerian duct created_by: dph creation_date: 2010-07-30T10:54:47Z @@ -100417,9 +99886,9 @@ def: "The process in which the anatomical structures of the mesonephros are gene synonym: "Wolffian body morphogenesis" EXACT [GOC:dph] is_a: GO:0060993 ! kidney morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000080 ! mesonephros +intersection_of: RO:0002298 UBERON:0000080 ! results in morphogenesis of mesonephros relationship: part_of GO:0001823 ! mesonephros development -relationship: results_in_morphogenesis_of UBERON:0000080 ! mesonephros +relationship: RO:0002298 UBERON:0000080 ! results in morphogenesis of mesonephros created_by: dph creation_date: 2010-08-17T03:11:10Z @@ -100467,9 +99936,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a collecting duct in the mesonephros over time, from its formation to the mature structure. The collecting duct regulates water, electrolyte and acid-base balance. The collecting duct is the final common path through which urine flows before entering the ureter and then emptying into the bladder." [GOC:mtg_kidney_jan10] is_a: GO:0072044 ! collecting duct development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005319 ! mesonephric collecting duct +intersection_of: RO:0002296 UBERON:0005319 ! results in development of mesonephric collecting duct relationship: part_of GO:0001823 ! mesonephros development -relationship: results_in_development_of UBERON:0005319 ! mesonephric collecting duct +relationship: RO:0002296 UBERON:0005319 ! results in development of mesonephric collecting duct created_by: dph creation_date: 2010-08-17T03:25:51Z @@ -100480,9 +99949,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the juxtaglomerular apparatus in the mesonephros over time, from its formation to the mature structure. The juxtaglomerular apparatus is an anatomical structure which consists of juxtaglomerular cells, extraglomerular mesangial cells and the macula densa. The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate." [GOC:mtg_kidney_jan10] is_a: GO:0072051 ! juxtaglomerular apparatus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005320 ! mesonephric juxtaglomerular apparatus +intersection_of: RO:0002296 UBERON:0005320 ! results in development of mesonephric juxtaglomerular apparatus relationship: part_of GO:0001823 ! mesonephros development -relationship: results_in_development_of UBERON:0005320 ! mesonephric juxtaglomerular apparatus +relationship: RO:0002296 UBERON:0005320 ! results in development of mesonephric juxtaglomerular apparatus created_by: dph creation_date: 2010-08-17T03:27:36Z @@ -100494,8 +99963,8 @@ def: "Any process that increases the rate, frequency or extent of mesonephros de is_a: GO:0061217 ! regulation of mesonephros development is_a: GO:0090184 ! positive regulation of kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001823 ! mesonephros development -relationship: positively_regulates GO:0001823 ! mesonephros development +intersection_of: RO:0002213 GO:0001823 ! positively regulates mesonephros development +relationship: RO:0002213 GO:0001823 ! positively regulates mesonephros development created_by: dph creation_date: 2010-08-17T03:39:35Z @@ -100506,9 +99975,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of smooth muscle in the mesonephros over time, from its formation to the mature structure." [GOC:mtg_kidney_jan10] is_a: GO:0072194 ! kidney smooth muscle tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005321 ! mesonephric smooth muscle tissue +intersection_of: RO:0002296 UBERON:0005321 ! results in development of mesonephric smooth muscle tissue relationship: part_of GO:0001823 ! mesonephros development -relationship: results_in_development_of UBERON:0005321 ! mesonephric smooth muscle tissue +relationship: RO:0002296 UBERON:0005321 ! results in development of mesonephric smooth muscle tissue created_by: dph creation_date: 2010-08-17T03:29:54Z @@ -100519,9 +99988,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a nephron in the mesonephros over time, from its formation to the mature structure. A nephron is the functional unit of the kidney." [GOC:mtg_kidney_jan10] is_a: GO:0072006 ! nephron development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005322 ! mesonephric nephron +intersection_of: RO:0002296 UBERON:0005322 ! results in development of mesonephric nephron relationship: part_of GO:0001823 ! mesonephros development -relationship: results_in_development_of UBERON:0005322 ! mesonephric nephron +relationship: RO:0002296 UBERON:0005322 ! results in development of mesonephric nephron created_by: dph creation_date: 2010-08-17T03:31:08Z @@ -100532,8 +100001,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency or extent of mesonephros development. Mesonephros development is the process whose specific outcome is the progression of the mesonephros over time, from its formation to the mature structure. The mesonephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine." [GOC:mtg_kidney_jan10] is_a: GO:0090183 ! regulation of kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001823 ! mesonephros development -relationship: regulates GO:0001823 ! mesonephros development +intersection_of: RO:0002211 GO:0001823 ! regulates (processual) mesonephros development +relationship: RO:0002211 GO:0001823 ! regulates (processual) mesonephros development created_by: dph creation_date: 2010-08-17T03:35:31Z @@ -100545,8 +100014,8 @@ def: "Any process that decreases the rate, frequency or extent of mesonephros de is_a: GO:0061217 ! regulation of mesonephros development is_a: GO:0090185 ! negative regulation of kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001823 ! mesonephros development -relationship: negatively_regulates GO:0001823 ! mesonephros development +intersection_of: RO:0002212 GO:0001823 ! negatively regulates mesonephros development +relationship: RO:0002212 GO:0001823 ! negatively regulates mesonephros development created_by: dph creation_date: 2010-08-17T03:43:06Z @@ -100557,9 +100026,9 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of a mesonephric mesenchyme from an initial condition to its mature state. This process begins with the formation of mesonephric mesenchyme and ends with the mature structure. Mesonephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the mesonephros." [GOC:mtg_kidney_jan10] is_a: GO:0072074 ! kidney mesenchyme development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005323 ! mesonephric mesenchyme +intersection_of: RO:0002296 UBERON:0005323 ! results in development of mesonephric mesenchyme relationship: part_of GO:0001823 ! mesonephros development -relationship: results_in_development_of UBERON:0005323 ! mesonephric mesenchyme +relationship: RO:0002296 UBERON:0005323 ! results in development of mesonephric mesenchyme created_by: dph creation_date: 2010-08-17T03:45:44Z @@ -100571,9 +100040,9 @@ def: "The process whose specific outcome is the progression of the mesonephric m is_a: GO:0061241 ! mesonephric nephron epithelium development is_a: GO:0072024 ! macula densa development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005324 ! mesonephric macula densa +intersection_of: RO:0002296 UBERON:0005324 ! results in development of mesonephric macula densa relationship: part_of GO:0061212 ! mesonephric juxtaglomerular apparatus development -relationship: results_in_development_of UBERON:0005324 ! mesonephric macula densa +relationship: RO:0002296 UBERON:0005324 ! results in development of mesonephric macula densa created_by: dph creation_date: 2010-08-19T01:11:41Z @@ -100584,9 +100053,9 @@ namespace: biological_process def: "The process in which the anatomical structures of a mesonephric mesenchymal tissue are generated and organized. Mesonephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the mesonephros." [GOC:mtg_kidney_jan10] is_a: GO:0072131 ! kidney mesenchyme morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005323 ! mesonephric mesenchyme +intersection_of: RO:0002298 UBERON:0005323 ! results in morphogenesis of mesonephric mesenchyme relationship: part_of GO:0061219 ! mesonephric mesenchyme development -relationship: results_in_morphogenesis_of UBERON:0005323 ! mesonephric mesenchyme +relationship: RO:0002298 UBERON:0005323 ! results in morphogenesis of mesonephric mesenchyme created_by: dph creation_date: 2010-08-19T01:17:38Z @@ -100597,9 +100066,9 @@ namespace: biological_process def: "The progression of the mesonephric glomerulus over time from its initial formation until its mature state. The mesonephric glomerulus is a capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the mature vertebrate kidney, or mesonephros." [GOC:mtg_kidney_jan10] is_a: GO:0032835 ! glomerulus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005325 ! mesonephric glomerulus +intersection_of: RO:0002296 UBERON:0005325 ! results in development of mesonephric glomerulus relationship: part_of GO:0061215 ! mesonephric nephron development -relationship: results_in_development_of UBERON:0005325 ! mesonephric glomerulus +relationship: RO:0002296 UBERON:0005325 ! results in development of mesonephric glomerulus created_by: dph creation_date: 2010-08-19T01:26:00Z @@ -100624,10 +100093,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the mesonephric nephron are generated and organized. A mesonephric nephron is the functional unit of the mesonephros." [GOC:mtg_kidney_jan10] is_a: GO:0072028 ! nephron morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005322 ! mesonephric nephron +intersection_of: RO:0002298 UBERON:0005322 ! results in morphogenesis of mesonephric nephron relationship: part_of GO:0061206 ! mesonephros morphogenesis relationship: part_of GO:0061215 ! mesonephric nephron development -relationship: results_in_morphogenesis_of UBERON:0005322 ! mesonephric nephron +relationship: RO:0002298 UBERON:0005322 ! results in morphogenesis of mesonephric nephron created_by: dph creation_date: 2010-08-19T02:26:24Z @@ -100638,9 +100107,9 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of a mesonephric glomerulus vasculature from an initial condition to its mature state. This process begins with the formation of the mesonephric glomerulus vasculature and ends with the mature structure. The mesonephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the mesonephric glomerulus." [GOC:mtg_kidney_jan10] is_a: GO:0072012 ! glomerulus vasculature development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005326 ! mesonephric glomerulus vasculature +intersection_of: RO:0002296 UBERON:0005326 ! results in development of mesonephric glomerulus vasculature relationship: part_of GO:0061224 ! mesonephric glomerulus development -relationship: results_in_development_of UBERON:0005326 ! mesonephric glomerulus vasculature +relationship: RO:0002296 UBERON:0005326 ! results in development of mesonephric glomerulus vasculature created_by: dph creation_date: 2010-08-19T02:47:06Z @@ -100652,9 +100121,9 @@ def: "The process whose specific outcome is the progression of the mesonephric g is_a: GO:0061241 ! mesonephric nephron epithelium development is_a: GO:0072010 ! glomerular epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005327 ! mesonephric glomerular epithelium +intersection_of: RO:0002296 UBERON:0005327 ! results in development of mesonephric glomerular epithelium relationship: part_of GO:0061224 ! mesonephric glomerulus development -relationship: results_in_development_of UBERON:0005327 ! mesonephric glomerular epithelium +relationship: RO:0002296 UBERON:0005327 ! results in development of mesonephric glomerular epithelium created_by: dph creation_date: 2010-08-19T02:49:46Z @@ -100665,10 +100134,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the mesonephric glomerulus are generated and organized. The mesonephric glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate mesonephros." [GOC:mtg_kidney_jan10] is_a: GO:0072102 ! glomerulus morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005325 ! mesonephric glomerulus +intersection_of: RO:0002298 UBERON:0005325 ! results in morphogenesis of mesonephric glomerulus relationship: part_of GO:0061224 ! mesonephric glomerulus development relationship: part_of GO:0061228 ! mesonephric nephron morphogenesis -relationship: results_in_morphogenesis_of UBERON:0005325 ! mesonephric glomerulus +relationship: RO:0002298 UBERON:0005325 ! results in morphogenesis of mesonephric glomerulus created_by: dph creation_date: 2010-08-19T02:53:35Z @@ -100689,9 +100158,9 @@ namespace: biological_process def: "The process in which the mesonephric comma-shaped body is generated and organized. The mesonephric comma-shaped body is the precursor structure to the mesonephric S-shaped body that contributes to the morphogenesis of a nephron in the mesonephros." [GOC:mtg_kidney_jan10] is_a: GO:0072049 ! comma-shaped body morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005328 ! mesonephric comma-shaped body +intersection_of: RO:0002298 UBERON:0005328 ! results in morphogenesis of mesonephric comma-shaped body relationship: part_of GO:0061228 ! mesonephric nephron morphogenesis -relationship: results_in_morphogenesis_of UBERON:0005328 ! mesonephric comma-shaped body +relationship: RO:0002298 UBERON:0005328 ! results in morphogenesis of mesonephric comma-shaped body created_by: dph creation_date: 2010-08-19T03:00:21Z @@ -100702,10 +100171,10 @@ namespace: biological_process def: "The process in which the anatomical structures of a mesonephric nephron tubule are generated and organized. A mesonephric nephron tubule is an epithelial tube that is part of the mesonephric nephron, the functional part of the mesonephros." [GOC:mtg_kidney_jan10] is_a: GO:0072171 ! mesonephric tubule morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005329 ! mesonephric nephron tubule +intersection_of: RO:0002298 UBERON:0005329 ! results in morphogenesis of mesonephric nephron tubule relationship: part_of GO:0061228 ! mesonephric nephron morphogenesis relationship: part_of GO:0061242 ! mesonephric nephron tubule development -relationship: results_in_morphogenesis_of UBERON:0005329 ! mesonephric nephron tubule +relationship: RO:0002298 UBERON:0005329 ! results in morphogenesis of mesonephric nephron tubule created_by: dph creation_date: 2010-08-19T03:09:26Z @@ -100717,9 +100186,9 @@ def: "The process whose specific outcome is the progression of the mesonephric n is_a: GO:0072009 ! nephron epithelium development is_a: GO:0072163 ! mesonephric epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005330 ! mesonephric nephron epithelium +intersection_of: RO:0002296 UBERON:0005330 ! results in development of mesonephric nephron epithelium relationship: part_of GO:0061215 ! mesonephric nephron development -relationship: results_in_development_of UBERON:0005330 ! mesonephric nephron epithelium +relationship: RO:0002296 UBERON:0005330 ! results in development of mesonephric nephron epithelium created_by: dph creation_date: 2010-08-19T03:11:59Z @@ -100732,8 +100201,8 @@ is_a: GO:0061241 ! mesonephric nephron epithelium development is_a: GO:0072080 ! nephron tubule development is_a: GO:0072164 ! mesonephric tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005329 ! mesonephric nephron tubule -relationship: results_in_development_of UBERON:0005329 ! mesonephric nephron tubule +intersection_of: RO:0002296 UBERON:0005329 ! results in development of mesonephric nephron tubule +relationship: RO:0002296 UBERON:0005329 ! results in development of mesonephric nephron tubule created_by: dph creation_date: 2010-08-19T03:17:00Z @@ -100744,9 +100213,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the mesonephric renal vesicle are generated and organized. The renal vesicle is the primordial structure of the mesonephric nephron epithelium, and is formed by the condensation of mesenchymal cells." [GOC:mtg_kidney_jan10] is_a: GO:0072077 ! renal vesicle morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005331 ! mesonephric renal vesicle +intersection_of: RO:0002298 UBERON:0005331 ! results in morphogenesis of mesonephric renal vesicle relationship: part_of GO:0061228 ! mesonephric nephron morphogenesis -relationship: results_in_morphogenesis_of UBERON:0005331 ! mesonephric renal vesicle +relationship: RO:0002298 UBERON:0005331 ! results in morphogenesis of mesonephric renal vesicle created_by: dph creation_date: 2010-08-19T03:20:21Z @@ -100757,9 +100226,9 @@ namespace: biological_process def: "The process in which the mesonephric S-shaped body is generated and organized. The mesonephric S-shaped body is the successor of the mesonephric comma-shaped body that contributes to the morphogenesis of a nephron in the mesonephros." [GOC:mtg_kidney_jan10] is_a: GO:0072050 ! S-shaped body morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005332 ! mesonephric S-shaped body +intersection_of: RO:0002298 UBERON:0005332 ! results in morphogenesis of mesonephric S-shaped body relationship: part_of GO:0061228 ! mesonephric nephron morphogenesis -relationship: results_in_morphogenesis_of UBERON:0005332 ! mesonephric S-shaped body +relationship: RO:0002298 UBERON:0005332 ! results in morphogenesis of mesonephric S-shaped body created_by: dph creation_date: 2010-08-19T03:23:55Z @@ -100770,9 +100239,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the mesonephric glomerular mesangium over time, from its formation to the mature structure. The mesonephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the mesonephros, which helps to support the capillary loops in a renal glomerulus." [GOC:mtg_kidney_jan10] is_a: GO:0072109 ! glomerular mesangium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006182 ! mesonephric glomerular mesangium +intersection_of: RO:0002296 UBERON:0006182 ! results in development of mesonephric glomerular mesangium relationship: part_of GO:0061231 ! mesonephric glomerulus vasculature development -relationship: results_in_development_of UBERON:0006182 ! mesonephric glomerular mesangium +relationship: RO:0002296 UBERON:0006182 ! results in development of mesonephric glomerular mesangium created_by: dph creation_date: 2010-08-30T12:59:25Z @@ -100783,10 +100252,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the mesonephric glomerulus vasculature are generated and organized. The mesonephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the mesonephric glomerulus." [GOC:mtg_kidney_jan10] is_a: GO:0072103 ! glomerulus vasculature morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005326 ! mesonephric glomerulus vasculature +intersection_of: RO:0002298 UBERON:0005326 ! results in morphogenesis of mesonephric glomerulus vasculature relationship: part_of GO:0061231 ! mesonephric glomerulus vasculature development relationship: part_of GO:0061234 ! mesonephric glomerulus morphogenesis -relationship: results_in_morphogenesis_of UBERON:0005326 ! mesonephric glomerulus vasculature +relationship: RO:0002298 UBERON:0005326 ! results in morphogenesis of mesonephric glomerulus vasculature created_by: dph creation_date: 2010-08-30T01:11:34Z @@ -100797,9 +100266,9 @@ namespace: biological_process def: "The process that gives rise to a mesonephric glomerular capillary. This process pertains to the initial formation of a structure from unspecified parts." [GOC:mtg_kidney_jan10] is_a: GO:0072104 ! glomerular capillary formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0006183 ! mesonephric glomerular capillary +intersection_of: RO:0002297 UBERON:0006183 ! results in formation of anatomical entity mesonephric glomerular capillary relationship: part_of GO:0061248 ! mesonephric glomerulus vasculature morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0006183 ! mesonephric glomerular capillary +relationship: RO:0002297 UBERON:0006183 ! results in formation of anatomical entity mesonephric glomerular capillary created_by: dph creation_date: 2010-08-30T01:17:08Z @@ -100833,8 +100302,8 @@ synonym: "mesonephric glomerular visceral epithelial cell differentiation" EXACT is_a: GO:0061250 ! mesonephric glomerular epithelial cell differentiation is_a: GO:0072112 ! podocyte differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002523 ! mesonephric podocyte -relationship: results_in_acquisition_of_features_of CL:0002523 ! mesonephric podocyte +intersection_of: RO:0002315 CL:0002523 ! results in acquisition of features of mesonephric podocyte +relationship: RO:0002315 CL:0002523 ! results in acquisition of features of mesonephric podocyte property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23000" xsd:anyURI created_by: dph creation_date: 2010-08-30T02:03:38Z @@ -100848,9 +100317,9 @@ synonym: "mesonephric glomerular visceral epithelial cell development" EXACT [] is_a: GO:0061251 ! mesonephric glomerular epithelial cell development is_a: GO:0072015 ! podocyte development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of CL:0002523 ! mesonephric podocyte +intersection_of: RO:0002296 CL:0002523 ! results in development of mesonephric podocyte relationship: part_of GO:0061256 ! mesonephric podocyte differentiation -relationship: results_in_development_of CL:0002523 ! mesonephric podocyte +relationship: RO:0002296 CL:0002523 ! results in development of mesonephric podocyte property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23000" xsd:anyURI created_by: dph creation_date: 2010-08-30T02:10:40Z @@ -100878,9 +100347,9 @@ def: "The developmental process pertaining to the initial formation of the meson synonym: "mesonephros formation" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0072033 ! renal vesicle formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005331 ! mesonephric renal vesicle +intersection_of: RO:0002297 UBERON:0005331 ! results in formation of anatomical entity mesonephric renal vesicle relationship: part_of GO:0061243 ! mesonephric renal vesicle morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005331 ! mesonephric renal vesicle +relationship: RO:0002297 UBERON:0005331 ! results in formation of anatomical entity mesonephric renal vesicle created_by: dph creation_date: 2010-08-30T02:41:20Z @@ -100892,9 +100361,9 @@ def: "The process in which relatively unspecialized cells acquire specialized st is_a: GO:0061208 ! cell differentiation involved in mesonephros development is_a: GO:0072160 ! nephron tubule epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000022 ! mesonephric nephron tubule epithelial cell +intersection_of: RO:0002315 CL:1000022 ! results in acquisition of features of mesonephric nephron tubule epithelial cell relationship: part_of GO:0061242 ! mesonephric nephron tubule development -relationship: results_in_acquisition_of_features_of CL:1000022 ! mesonephric nephron tubule epithelial cell +relationship: RO:0002315 CL:1000022 ! results in acquisition of features of mesonephric nephron tubule epithelial cell created_by: dph creation_date: 2010-08-30T03:02:09Z @@ -100921,8 +100390,8 @@ synonym: "mesonephric connecting duct development" RELATED [GOC:mtg_kidney_jan10 is_a: GO:0061242 ! mesonephric nephron tubule development is_a: GO:0072027 ! connecting tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006189 ! mesonephric connecting tubule -relationship: results_in_development_of UBERON:0006189 ! mesonephric connecting tubule +intersection_of: RO:0002296 UBERON:0006189 ! results in development of mesonephric connecting tubule +relationship: RO:0002296 UBERON:0006189 ! results in development of mesonephric connecting tubule created_by: dph creation_date: 2010-09-02T12:00:56Z @@ -100934,9 +100403,9 @@ def: "The process in which the anatomical structures of a mesonephric distal tub is_a: GO:0061240 ! mesonephric nephron tubule morphogenesis is_a: GO:0072156 ! distal tubule morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0006190 ! mesonephric distal tubule +intersection_of: RO:0002298 UBERON:0006190 ! results in morphogenesis of mesonephric distal tubule relationship: part_of GO:0061274 ! mesonephric distal tubule development -relationship: results_in_morphogenesis_of UBERON:0006190 ! mesonephric distal tubule +relationship: RO:0002298 UBERON:0006190 ! results in morphogenesis of mesonephric distal tubule created_by: dph creation_date: 2010-09-02T12:12:00Z @@ -100948,8 +100417,8 @@ def: "The process whose specific outcome is the progression of the mesonephric d is_a: GO:0061242 ! mesonephric nephron tubule development is_a: GO:0072017 ! distal tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006190 ! mesonephric distal tubule -relationship: results_in_development_of UBERON:0006190 ! mesonephric distal tubule +intersection_of: RO:0002296 UBERON:0006190 ! results in development of mesonephric distal tubule +relationship: RO:0002296 UBERON:0006190 ! results in development of mesonephric distal tubule created_by: dph creation_date: 2010-09-02T12:16:25Z @@ -100961,8 +100430,8 @@ def: "The progression of the mesonephric proximal tubule over time, from its for is_a: GO:0061242 ! mesonephric nephron tubule development is_a: GO:0072014 ! proximal tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006192 ! mesonephric proximal tubule -relationship: results_in_development_of UBERON:0006192 ! mesonephric proximal tubule +intersection_of: RO:0002296 UBERON:0006192 ! results in development of mesonephric proximal tubule +relationship: RO:0002296 UBERON:0006192 ! results in development of mesonephric proximal tubule created_by: dph creation_date: 2010-09-02T01:08:05Z @@ -100974,9 +100443,9 @@ def: "The process in which the anatomical structures of a mesonephric proximal t is_a: GO:0061240 ! mesonephric nephron tubule morphogenesis is_a: GO:0072158 ! proximal tubule morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0006192 ! mesonephric proximal tubule +intersection_of: RO:0002298 UBERON:0006192 ! results in morphogenesis of mesonephric proximal tubule relationship: part_of GO:0061275 ! mesonephric proximal tubule development -relationship: results_in_morphogenesis_of UBERON:0006192 ! mesonephric proximal tubule +relationship: RO:0002298 UBERON:0006192 ! results in morphogenesis of mesonephric proximal tubule created_by: dph creation_date: 2010-09-02T01:11:02Z @@ -100987,9 +100456,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a mesonephric nephron tubule from unspecified parts. A mesonephric nephron tubule is an epithelial tube that is part of a nephron in the mesonephros." [GOC:mtg_kidney_jan10] is_a: GO:0072172 ! mesonephric tubule formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005329 ! mesonephric nephron tubule +intersection_of: RO:0002297 UBERON:0005329 ! results in formation of anatomical entity mesonephric nephron tubule relationship: part_of GO:0061240 ! mesonephric nephron tubule morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005329 ! mesonephric nephron tubule +relationship: RO:0002297 UBERON:0005329 ! results in formation of anatomical entity mesonephric nephron tubule created_by: dph creation_date: 2010-09-02T01:16:21Z @@ -101038,9 +100507,9 @@ namespace: biological_process def: "The progression of the mesonephric capsule over time, from its formation to the mature structure. The mesonephric capsule is the tough fibrous layer surrounding the mesonephros, covered in a thick layer of perinephric adipose tissue." [GOC:mtg_kidney_jan10] is_a: GO:0072127 ! renal capsule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006170 ! mesonephric capsule +intersection_of: RO:0002296 UBERON:0006170 ! results in development of mesonephric capsule relationship: part_of GO:0001823 ! mesonephros development -relationship: results_in_development_of UBERON:0006170 ! mesonephric capsule +relationship: RO:0002296 UBERON:0006170 ! results in development of mesonephric capsule created_by: dph creation_date: 2010-09-02T01:50:06Z @@ -101051,9 +100520,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the mesonephric capsule are generated and organized. The mesonephric capsule is the tough fibrous layer surrounding the mesonephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage." [GOC:mtg_kidney_jan10] is_a: GO:0072128 ! renal capsule morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0006170 ! mesonephric capsule +intersection_of: RO:0002298 UBERON:0006170 ! results in morphogenesis of mesonephric capsule relationship: part_of GO:0061285 ! mesonephric capsule development -relationship: results_in_morphogenesis_of UBERON:0006170 ! mesonephric capsule +relationship: RO:0002298 UBERON:0006170 ! results in morphogenesis of mesonephric capsule created_by: dph creation_date: 2010-09-02T01:53:31Z @@ -101064,9 +100533,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a mesonephric capsule from unspecified parts. The mesonephric capsule is the tough fibrous layer surrounding the mesonephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage." [GOC:mtg_kidney_jan10] is_a: GO:0072129 ! renal capsule formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0006170 ! mesonephric capsule +intersection_of: RO:0002297 UBERON:0006170 ! results in formation of anatomical entity mesonephric capsule relationship: part_of GO:0061286 ! mesonephric capsule morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0006170 ! mesonephric capsule +relationship: RO:0002297 UBERON:0006170 ! results in formation of anatomical entity mesonephric capsule created_by: dph creation_date: 2010-09-02T01:55:03Z @@ -101079,9 +100548,9 @@ synonym: "regulation of mesenchymal stem cell apoptosis involved in mesonephric synonym: "regulation of mesenchymal stem cell apoptotic process involved in mesonephric nephron morphogenesis" EXACT [] is_a: GO:0072039 ! regulation of mesenchymal cell apoptotic process involved in nephron morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1901146 ! mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis -relationship: regulates GO:0061235 ! mesenchymal stem cell maintenance involved in mesonephric nephron morphogenesis -relationship: regulates GO:1901146 ! mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis +intersection_of: RO:0002211 GO:1901146 ! regulates (processual) mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis +relationship: RO:0002211 GO:0061235 ! regulates (processual) mesenchymal stem cell maintenance involved in mesonephric nephron morphogenesis +relationship: RO:0002211 GO:1901146 ! regulates (processual) mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis created_by: dph creation_date: 2010-09-06T09:48:56Z @@ -101096,9 +100565,9 @@ is_a: GO:0061218 ! negative regulation of mesonephros development is_a: GO:0061295 ! regulation of mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis is_a: GO:0072040 ! negative regulation of mesenchymal cell apoptotic process involved in nephron morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1901146 ! mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis -relationship: negatively_regulates GO:0061235 ! mesenchymal stem cell maintenance involved in mesonephric nephron morphogenesis -relationship: negatively_regulates GO:1901146 ! mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis +intersection_of: RO:0002212 GO:1901146 ! negatively regulates mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis +relationship: RO:0002212 GO:0061235 ! negatively regulates mesenchymal stem cell maintenance involved in mesonephric nephron morphogenesis +relationship: RO:0002212 GO:1901146 ! negatively regulates mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis created_by: dph creation_date: 2010-09-06T09:54:49Z @@ -101113,9 +100582,9 @@ is_a: GO:0061213 ! positive regulation of mesonephros development is_a: GO:0061295 ! regulation of mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis is_a: GO:0072041 ! positive regulation of mesenchymal cell apoptotic process involved in nephron morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1901146 ! mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis -relationship: positively_regulates GO:0061235 ! mesenchymal stem cell maintenance involved in mesonephric nephron morphogenesis -relationship: positively_regulates GO:1901146 ! mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis +intersection_of: RO:0002213 GO:1901146 ! positively regulates mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis +relationship: RO:0002213 GO:0061235 ! positively regulates mesenchymal stem cell maintenance involved in mesonephric nephron morphogenesis +relationship: RO:0002213 GO:1901146 ! positively regulates mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis created_by: dph creation_date: 2010-09-06T09:58:59Z @@ -101127,9 +100596,9 @@ def: "The process whose specific outcome is the progression of the vasculature o synonym: "retinal vasculature development" EXACT [GOC:dph] is_a: GO:0001944 ! vasculature development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004864 ! vasculature of retina +intersection_of: RO:0002296 UBERON:0004864 ! results in development of vasculature of retina relationship: part_of GO:0060041 ! retina development in camera-type eye -relationship: results_in_development_of UBERON:0004864 ! vasculature of retina +relationship: RO:0002296 UBERON:0004864 ! results in development of vasculature of retina created_by: dph creation_date: 2010-09-06T03:27:06Z @@ -101141,9 +100610,9 @@ def: "The process in which the vasculature of the retina is generated and organi synonym: "retinal vasculature morphogenesis" EXACT [GOC:dph] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004864 ! vasculature of retina +intersection_of: RO:0002298 UBERON:0004864 ! results in morphogenesis of vasculature of retina relationship: part_of GO:0061298 ! retina vasculature development in camera-type eye -relationship: results_in_morphogenesis_of UBERON:0004864 ! vasculature of retina +relationship: RO:0002298 UBERON:0004864 ! results in morphogenesis of vasculature of retina created_by: dph creation_date: 2010-09-06T03:28:25Z @@ -101154,8 +100623,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the vasculature of the cerebellum over time, from its formation to the mature structure." [GOC:dph] is_a: GO:0001944 ! vasculature development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006694 ! cerebellum vasculature -relationship: results_in_development_of UBERON:0006694 ! cerebellum vasculature +intersection_of: RO:0002296 UBERON:0006694 ! results in development of cerebellum vasculature +relationship: RO:0002296 UBERON:0006694 ! results in development of cerebellum vasculature created_by: dph creation_date: 2010-09-06T03:36:40Z @@ -101166,10 +100635,10 @@ namespace: biological_process def: "The process in which the vasculature of the cerebellum is generated and organized." [GOC:BHF, GOC:dph] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0006694 ! cerebellum vasculature +intersection_of: RO:0002298 UBERON:0006694 ! results in morphogenesis of cerebellum vasculature relationship: part_of GO:0021549 ! cerebellum development relationship: part_of GO:0061300 ! cerebellum vasculature development -relationship: results_in_morphogenesis_of UBERON:0006694 ! cerebellum vasculature +relationship: RO:0002298 UBERON:0006694 ! results in morphogenesis of cerebellum vasculature created_by: dph creation_date: 2010-09-06T03:38:05Z @@ -101180,9 +100649,9 @@ namespace: biological_process def: "The progression of the cornea over time, from its formation to the mature structure. The cornea is the transparent structure that covers the anterior of the eye." [GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000964 ! cornea +intersection_of: RO:0002296 UBERON:0000964 ! results in development of cornea relationship: part_of GO:0043010 ! camera-type eye development -relationship: results_in_development_of UBERON:0000964 ! cornea +relationship: RO:0002296 UBERON:0000964 ! results in development of cornea created_by: dph creation_date: 2010-09-14T02:09:08Z @@ -101194,8 +100663,8 @@ def: "The process whose specific outcome is the progression of a blood vessel of is_a: GO:0048514 ! blood vessel morphogenesis is_a: GO:0061299 ! retina vasculature morphogenesis in camera-type eye intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003501 ! retina blood vessel -relationship: results_in_morphogenesis_of UBERON:0003501 ! retina blood vessel +intersection_of: RO:0002298 UBERON:0003501 ! results in morphogenesis of retina blood vessel +relationship: RO:0002298 UBERON:0003501 ! results in morphogenesis of retina blood vessel created_by: dph creation_date: 2010-09-16T09:02:59Z @@ -101258,9 +100727,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of a renal filtration cell. Renal filtration cells are specialized cells of the renal system that filter fluids by charge, size or both. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state." [GOC:dph, GOC:mtg_kidney_jan10] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002522 ! renal filtration cell +intersection_of: RO:0002315 CL:0002522 ! results in acquisition of features of renal filtration cell relationship: part_of GO:0072001 ! renal system development -relationship: results_in_acquisition_of_features_of CL:0002522 ! renal filtration cell +relationship: RO:0002315 CL:0002522 ! results in acquisition of features of renal filtration cell created_by: dph creation_date: 2010-09-24T12:18:35Z @@ -101296,9 +100765,9 @@ def: "The progression of the renal tubule over time from its formation to the ma is_a: GO:0035295 ! tube development is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0009773 ! renal tubule +intersection_of: RO:0002296 UBERON:0009773 ! results in development of renal tubule relationship: part_of GO:0072001 ! renal system development -relationship: results_in_development_of UBERON:0009773 ! renal tubule +relationship: RO:0002296 UBERON:0009773 ! results in development of renal tubule created_by: dph creation_date: 2010-09-28T12:50:43Z @@ -101323,9 +100792,9 @@ synonym: "Malpighian tubule formation" EXACT [GOC:dph] is_a: GO:0060572 ! morphogenesis of an epithelial bud is_a: GO:0072175 ! epithelial tube formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001054 ! Malpighian tubule +intersection_of: RO:0002297 UBERON:0001054 ! results in formation of anatomical entity Malpighian tubule relationship: part_of GO:0007443 ! Malpighian tubule morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001054 ! Malpighian tubule +relationship: RO:0002297 UBERON:0001054 ! results in formation of anatomical entity Malpighian tubule created_by: dph creation_date: 2010-09-28T01:39:32Z @@ -101336,9 +100805,9 @@ namespace: biological_process def: "The process in which the renal tubule is generated by specification of cell fate, through the maintenance of cell polarity, regulated cell proliferation and morphogenetic cell rearrangements, shape changes and growth. A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and to play a role in fluid homeostasis." [GOC:dph, GOC:mtg_kidney_jan10] is_a: GO:0060562 ! epithelial tube morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0009773 ! renal tubule +intersection_of: RO:0002298 UBERON:0009773 ! results in morphogenesis of renal tubule relationship: part_of GO:0061326 ! renal tubule development -relationship: results_in_morphogenesis_of UBERON:0009773 ! renal tubule +relationship: RO:0002298 UBERON:0009773 ! results in morphogenesis of renal tubule created_by: dph creation_date: 2010-09-28T01:43:04Z @@ -101408,8 +100877,8 @@ namespace: biological_process def: "Any process that modulates the extent of cell adhesion contributing to the shaping of the heart." [GOC:dph, GOC:mtg_heart, PMID:16860783] is_a: GO:0030155 ! regulation of cell adhesion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061343 ! cell adhesion involved in heart morphogenesis -relationship: regulates GO:0061343 ! cell adhesion involved in heart morphogenesis +intersection_of: RO:0002211 GO:0061343 ! regulates (processual) cell adhesion involved in heart morphogenesis +relationship: RO:0002211 GO:0061343 ! regulates (processual) cell adhesion involved in heart morphogenesis created_by: dph creation_date: 2010-09-29T11:35:27Z @@ -101443,9 +100912,9 @@ def: "The developmental process pertaining to the progression of the optic chias synonym: "optic chiasm development" EXACT [GOC:dph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000959 ! optic chiasma +intersection_of: RO:0002296 UBERON:0000959 ! results in development of optic chiasma relationship: part_of GO:0021554 ! optic nerve development -relationship: results_in_development_of UBERON:0000959 ! optic chiasma +relationship: RO:0002296 UBERON:0000959 ! results in development of optic chiasma created_by: dph creation_date: 2010-10-13T08:00:29Z @@ -101459,8 +100928,8 @@ is_a: GO:0042181 ! ketone biosynthetic process is_a: GO:0120255 ! olefinic compound biosynthetic process is_a: GO:1901617 ! organic hydroxy compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:17347 ! testosterone -relationship: has_primary_output CHEBI:17347 ! testosterone +intersection_of: RO:0004008 CHEBI:17347 ! has primary output testosterone +relationship: RO:0004008 CHEBI:17347 ! has primary output testosterone created_by: dph creation_date: 2010-10-27T02:50:48Z @@ -101471,9 +100940,9 @@ namespace: biological_process def: "The progression of the mammillary axonal complex over time, from its formation to the mature structure. The mammillary axonal complex is formed by the axons from the lateral, medial mammillary and the dorsal premammillary nuclei which share a branching pattern. Every neuron gives off one axonal stem that bifurcates into 2 branches. One of the branches is directed dorsally to the thalamus and another caudally to the midbrain." [GOC:dph, GOC:yaf, PMID:10662642] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006695 ! mammillary axonal complex +intersection_of: RO:0002296 UBERON:0006695 ! results in development of mammillary axonal complex relationship: part_of GO:0021767 ! mammillary body development -relationship: results_in_development_of UBERON:0006695 ! mammillary axonal complex +relationship: RO:0002296 UBERON:0006695 ! results in development of mammillary axonal complex created_by: dph creation_date: 2010-11-09T08:49:59Z @@ -101484,9 +100953,9 @@ namespace: biological_process def: "The progression of the mammillothalamic axonal tract, from its formation to the mature structure. The mammillothalamic tract is the collection of axons that connects the two major subdivisions of the diencephalon (hypothalamus and thalamus) and closes the diencephalic circuit." [GOC:dph, GOC:yaf, PMID:10662642] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006696 ! mammillothalamic axonal tract +intersection_of: RO:0002296 UBERON:0006696 ! results in development of mammillothalamic axonal tract relationship: part_of GO:0061373 ! mammillary axonal complex development -relationship: results_in_development_of UBERON:0006696 ! mammillothalamic axonal tract +relationship: RO:0002296 UBERON:0006696 ! results in development of mammillothalamic axonal tract created_by: dph creation_date: 2010-11-09T08:54:43Z @@ -101497,9 +100966,9 @@ namespace: biological_process def: "The progression of the mammillotectal tract over time, from its formation to the mature structure. The mammillotectal tract is the collection of axons that connects the ventral diencephalon to the superior colliculus." [GOC:dph, GOC:yaf, PMID:10662642] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006697 ! mammillotectal axonal tract +intersection_of: RO:0002296 UBERON:0006697 ! results in development of mammillotectal axonal tract relationship: part_of GO:0061373 ! mammillary axonal complex development -relationship: results_in_development_of UBERON:0006697 ! mammillotectal axonal tract +relationship: RO:0002296 UBERON:0006697 ! results in development of mammillotectal axonal tract created_by: dph creation_date: 2010-11-09T09:01:14Z @@ -101510,9 +100979,9 @@ namespace: biological_process def: "The process in which the mammillotegmental tract progresses over time, from its formation to the mature structure. The mammillotegmental tract is the collection of axons that connects the ventral diencephalon to the tegmentum and pons." [GOC:dph, GOC:yaf, PMID:10662642] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006698 ! mammillotegmental axonal tract +intersection_of: RO:0002296 UBERON:0006698 ! results in development of mammillotegmental axonal tract relationship: part_of GO:0061373 ! mammillary axonal complex development -relationship: results_in_development_of UBERON:0006698 ! mammillotegmental axonal tract +relationship: RO:0002296 UBERON:0006698 ! results in development of mammillotegmental axonal tract created_by: dph creation_date: 2010-11-09T09:09:29Z @@ -101523,9 +100992,9 @@ namespace: biological_process def: "The progression of the mammary gland lobule over time, from its formation to the mature structure. A mammary gland lobule is a small rounded projection of the mammary gland." [GOC:dph, GOC:yaf] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001912 ! lobule of mammary gland +intersection_of: RO:0002296 UBERON:0001912 ! results in development of lobule of mammary gland relationship: part_of GO:0030879 ! mammary gland development -relationship: results_in_development_of UBERON:0001912 ! lobule of mammary gland +relationship: RO:0002296 UBERON:0001912 ! results in development of lobule of mammary gland created_by: dph creation_date: 2010-11-09T09:36:29Z @@ -101536,9 +101005,9 @@ namespace: biological_process def: "The progression of the corpora quadrigemina over time, from its formation to the mature structure. The corpora quadrigemina is a part of the midbrain that is made up of the superior and inferior colliculi." [GOC:dph, GOC:yaf] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002259 ! corpora quadrigemina +intersection_of: RO:0002296 UBERON:0002259 ! results in development of corpora quadrigemina relationship: part_of GO:0030901 ! midbrain development -relationship: results_in_development_of UBERON:0002259 ! corpora quadrigemina +relationship: RO:0002296 UBERON:0002259 ! results in development of corpora quadrigemina created_by: dph creation_date: 2010-11-09T09:45:36Z @@ -101549,9 +101018,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the inferior colliculus over time, from its formation to the mature structure. The inferior colliculus (IC) (Latin, lower hill) is the principal midbrain nucleus of the auditory pathway and receives input from several more peripheral brainstem nuclei in the auditory pathway, as well as inputs from the auditory cortex. The inferior colliculus has three subdivisions: the central nucleus (CIC), a dorsal cortex (DCIC) by which it is surrounded, and an external cortex (ICX) which is located laterally." [GOC:dph, GOC:yaf] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001946 ! inferior colliculus +intersection_of: RO:0002296 UBERON:0001946 ! results in development of inferior colliculus relationship: part_of GO:0061378 ! corpora quadrigemina development -relationship: results_in_development_of UBERON:0001946 ! inferior colliculus +relationship: RO:0002296 UBERON:0001946 ! results in development of inferior colliculus created_by: dph creation_date: 2010-11-09T09:49:24Z @@ -101562,9 +101031,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the superior colliculus over time, from its formation to the mature structure. The superior colliculus is also known as the optic tectum or simply tectum and is a paired structure that forms a major component of the vertebrate midbrain." [GOC:dph, GOC:yaf] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001945 ! superior colliculus +intersection_of: RO:0002296 UBERON:0001945 ! results in development of superior colliculus relationship: part_of GO:0061378 ! corpora quadrigemina development -relationship: results_in_development_of UBERON:0001945 ! superior colliculus +relationship: RO:0002296 UBERON:0001945 ! results in development of superior colliculus created_by: dph creation_date: 2010-11-09T09:51:00Z @@ -101575,8 +101044,8 @@ namespace: biological_process def: "The process of shaping a trabecula in an organ. A trabecula is a small, often microscopic, tissue element in the form of a small beam, strut or rod, which generally has a mechanical function. Trabecula are usually but not necessarily, composed of dense collagenous tissue." [GOC:dph] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000440 ! trabecula -relationship: results_in_morphogenesis_of UBERON:0000440 ! trabecula +intersection_of: RO:0002298 UBERON:0000440 ! results in morphogenesis of trabecula +relationship: RO:0002298 UBERON:0000440 ! results in morphogenesis of trabecula created_by: dph creation_date: 2010-12-02T08:51:45Z @@ -101587,8 +101056,8 @@ namespace: biological_process def: "The process of shaping a trabecula in the heart. A trabecula is a small, often microscopic, tissue element in the form of a small beam, strut or rod, which generally has a mechanical function. Trabecula are usually but not necessarily, composed of dense collagenous tissue." [GOC:dph] is_a: GO:0061383 ! trabecula morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002511 ! trabecula carnea -relationship: results_in_morphogenesis_of UBERON:0002511 ! trabecula carnea +intersection_of: RO:0002298 UBERON:0002511 ! results in morphogenesis of trabecula carnea +relationship: RO:0002298 UBERON:0002511 ! results in morphogenesis of trabecula carnea created_by: dph creation_date: 2010-12-02T08:54:20Z @@ -101641,10 +101110,10 @@ namespace: biological_process def: "The process in which the kidney vasculature is generated and organized. Morphogenesis pertains to the creation of form." [GOC:dph, GOC:mtg_kidney_jan10] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0006544 ! kidney vasculature +intersection_of: RO:0002298 UBERON:0006544 ! results in morphogenesis of kidney vasculature relationship: part_of GO:0061438 ! renal system vasculature morphogenesis relationship: part_of GO:0061440 ! kidney vasculature development -relationship: results_in_morphogenesis_of UBERON:0006544 ! kidney vasculature +relationship: RO:0002298 UBERON:0006544 ! results in morphogenesis of kidney vasculature created_by: dph creation_date: 2012-03-08T12:30:11Z @@ -101655,9 +101124,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the vasculature of the kidney over time, from its formation to the mature structure." [GOC:dph, GOC:mtg_kidney_jan10, PMID:11891195] is_a: GO:0061437 ! renal system vasculature development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006544 ! kidney vasculature +intersection_of: RO:0002296 UBERON:0006544 ! results in development of kidney vasculature relationship: part_of GO:0001822 ! kidney development -relationship: results_in_development_of UBERON:0006544 ! kidney vasculature +relationship: RO:0002296 UBERON:0006544 ! results in development of kidney vasculature created_by: dph creation_date: 2012-03-08T12:39:09Z @@ -101668,9 +101137,9 @@ namespace: biological_process def: "The process in which the anatomical structure of a renal artery is generated and organized. Renal arteries supply the kidneys with blood." [GOC:mtg_kidney_jan10, PMID:11891195] is_a: GO:0048844 ! artery morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001184 ! renal artery +intersection_of: RO:0002298 UBERON:0001184 ! results in morphogenesis of renal artery relationship: part_of GO:0061439 ! kidney vasculature morphogenesis -relationship: results_in_morphogenesis_of UBERON:0001184 ! renal artery +relationship: RO:0002298 UBERON:0001184 ! results in morphogenesis of renal artery created_by: dph creation_date: 2012-03-08T12:42:09Z @@ -101681,8 +101150,8 @@ namespace: biological_process def: "The progression of a connective tissue over time, from its formation to the mature structure." [GOC:BHF] is_a: GO:0009888 ! tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002384 ! connective tissue -relationship: results_in_development_of UBERON:0002384 ! connective tissue +intersection_of: RO:0002296 UBERON:0002384 ! results in development of connective tissue +relationship: RO:0002296 UBERON:0002384 ! results in development of connective tissue created_by: dph creation_date: 2012-03-22T12:53:41Z @@ -101693,9 +101162,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of an olfactory bulb tufted cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell." [GOC:dph] is_a: GO:0048666 ! neuron development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:1001503 ! olfactory bulb tufted cell +intersection_of: RO:0002296 CL:1001503 ! results in development of olfactory bulb tufted cell relationship: part_of GO:0021772 ! olfactory bulb development -relationship: results_in_development_of CL:1001503 ! olfactory bulb tufted cell +relationship: RO:0002296 CL:1001503 ! results in development of olfactory bulb tufted cell created_by: dph creation_date: 2012-05-15T12:30:21Z @@ -101706,9 +101175,9 @@ namespace: biological_process def: "Trophoblast cell migration that is accomplished by extension and retraction of a pseudopodium. Trophoblast cells line the outside of the blastocyst." [GOC:dph] is_a: GO:0001667 ! ameboidal-type cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000351 ! trophoblast cell +intersection_of: RO:0002565 CL:0000351 ! results in movement of trophoblast cell relationship: part_of GO:0007566 ! embryo implantation -relationship: results_in_movement_of CL:0000351 ! trophoblast cell +relationship: RO:0002565 CL:0000351 ! results in movement of trophoblast cell created_by: dph creation_date: 2012-07-10T08:38:37Z @@ -101719,9 +101188,9 @@ namespace: biological_process def: "The progression of the retrotrapezoid nucleus (RTN) over time from it's initial formation to its mature state. The retrotrapezoid nucleus is a group of neurons in the rostral medulla, which are responsible regulating respiration." [GOC:dph] is_a: GO:0048857 ! neural nucleus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0009918 ! retrotrapezoid nucleus +intersection_of: RO:0002296 UBERON:0009918 ! results in development of retrotrapezoid nucleus relationship: part_of GO:0021550 ! medulla oblongata development -relationship: results_in_development_of UBERON:0009918 ! retrotrapezoid nucleus +relationship: RO:0002296 UBERON:0009918 ! results in development of retrotrapezoid nucleus created_by: dph creation_date: 2012-07-19T12:38:30Z @@ -101732,9 +101201,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the retrotrapezoid nucleus." [GOC:dph] is_a: GO:0021953 ! central nervous system neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000001 ! retrotrapezoid nucleus neuron +intersection_of: RO:0002315 CL:1000001 ! results in acquisition of features of retrotrapezoid nucleus neuron relationship: part_of GO:0061451 ! retrotrapezoid nucleus development -relationship: results_in_acquisition_of_features_of CL:1000001 ! retrotrapezoid nucleus neuron +relationship: RO:0002315 CL:1000001 ! results in acquisition of features of retrotrapezoid nucleus neuron created_by: dph creation_date: 2012-07-19T12:43:18Z @@ -101747,8 +101216,8 @@ synonym: "ICC differentiation" RELATED [GOC:dph] is_a: GO:0060563 ! neuroepithelial cell differentiation is_a: GO:0060575 ! intestinal epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002088 ! interstitial cell of Cajal -relationship: results_in_acquisition_of_features_of CL:0002088 ! interstitial cell of Cajal +intersection_of: RO:0002315 CL:0002088 ! results in acquisition of features of interstitial cell of Cajal +relationship: RO:0002315 CL:0002088 ! results in acquisition of features of interstitial cell of Cajal created_by: dph creation_date: 2012-07-20T08:20:50Z @@ -101761,14 +101230,14 @@ synonym: "Golgi calcium ion export" BROAD [] is_a: GO:0051209 ! release of sequestered calcium ion into cytosol is_a: GO:0061856 ! Golgi calcium ion transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29108 ! calcium(2+) -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005794 ! Golgi apparatus -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:29108 ! calcium(2+) -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005794 ! Golgi apparatus -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002338 GO:0005794 ! has target start location Golgi apparatus +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) +relationship: RO:0002338 GO:0005794 ! has target start location Golgi apparatus +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) created_by: dph creation_date: 2012-07-27T02:29:43Z @@ -101779,8 +101248,8 @@ namespace: biological_process def: "The progression of the reproductive system over time from its formation to the mature structure. The reproductive system consists of the organs that function in reproduction." [GOC:dph] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000990 ! reproductive system -relationship: results_in_development_of UBERON:0000990 ! reproductive system +intersection_of: RO:0002296 UBERON:0000990 ! results in development of reproductive system +relationship: RO:0002296 UBERON:0000990 ! results in development of reproductive system created_by: dph creation_date: 2012-08-22T17:47:53Z @@ -101791,8 +101260,8 @@ namespace: biological_process def: "A process in which a protein is transported to, or maintained in, a location within a lysosome." [GOC:dph] is_a: GO:0072665 ! protein localization to vacuole intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005764 ! lysosome -relationship: has_target_end_location GO:0005764 ! lysosome +intersection_of: RO:0002339 GO:0005764 ! has target end location lysosome +relationship: RO:0002339 GO:0005764 ! has target end location lysosome created_by: dph creation_date: 2012-10-05T10:50:51Z @@ -101803,8 +101272,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of type B pancreatic cell proliferation." [GOC:dph] is_a: GO:0050678 ! regulation of epithelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0044342 ! type B pancreatic cell proliferation -relationship: regulates GO:0044342 ! type B pancreatic cell proliferation +intersection_of: RO:0002211 GO:0044342 ! regulates (processual) type B pancreatic cell proliferation +relationship: RO:0002211 GO:0044342 ! regulates (processual) type B pancreatic cell proliferation created_by: dph creation_date: 2012-11-01T13:16:23Z @@ -101815,8 +101284,8 @@ namespace: biological_process def: "Any biological process involved in the maintenance of the steady-state number of hematopoietic stem cells within a population of cells." [GOC:dph, PMID:21508411] is_a: GO:0048872 ! homeostasis of number of cells intersection_of: GO:0048872 ! homeostasis of number of cells -intersection_of: acts_on_population_of CL:0000037 ! hematopoietic stem cell -relationship: acts_on_population_of CL:0000037 ! hematopoietic stem cell +intersection_of: RO:0012003 CL:0000037 ! acts on population of hematopoietic stem cell +relationship: RO:0012003 CL:0000037 ! acts on population of hematopoietic stem cell created_by: dph creation_date: 2012-12-04T09:41:02Z @@ -101827,8 +101296,7 @@ namespace: biological_process def: "A process in which a protein is transported to, or maintained in, a location within a cilium." [GOC:dph] is_a: GO:0033365 ! protein localization to organelle intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005929 ! cilium -relationship: has_target_end_location GO:0005929 ! cilium +intersection_of: RO:0002339 GO:0005929 ! has target end location cilium relationship: in_taxon NCBITaxon:2759 {all_only="true"} ! Eukaryota relationship: never_in_taxon NCBITaxon:3176 ! Zygnematales relationship: never_in_taxon NCBITaxon:3312 ! Coniferophyta @@ -101836,7 +101304,8 @@ relationship: never_in_taxon NCBITaxon:3378 ! Gnetales relationship: never_in_taxon NCBITaxon:3398 ! Magnoliopsida relationship: never_in_taxon NCBITaxon:4890 ! Ascomycota relationship: never_in_taxon NCBITaxon:5782 ! Dictyostelium -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota +relationship: RO:0002339 GO:0005929 ! has target end location cilium created_by: dph creation_date: 2013-03-22T15:41:44Z @@ -101847,9 +101316,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a myeloid cell over time, from its formation to the mature structure." [GOC:dph] is_a: GO:0030097 ! hemopoiesis intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:0000763 ! myeloid cell +intersection_of: RO:0002296 CL:0000763 ! results in development of myeloid cell relationship: part_of GO:0030099 ! myeloid cell differentiation -relationship: results_in_development_of CL:0000763 ! myeloid cell +relationship: RO:0002296 CL:0000763 ! results in development of myeloid cell created_by: dph creation_date: 2013-04-18T13:03:16Z @@ -101861,8 +101330,8 @@ def: "The process of regulating the proliferation and elimination of macrophage is_a: GO:0001776 ! leukocyte homeostasis is_a: GO:0002262 ! myeloid cell homeostasis intersection_of: GO:0048872 ! homeostasis of number of cells -intersection_of: acts_on_population_of CL:0000235 ! macrophage -relationship: acts_on_population_of CL:0000235 ! macrophage +intersection_of: RO:0012003 CL:0000235 ! acts on population of macrophage +relationship: RO:0012003 CL:0000235 ! acts on population of macrophage created_by: dph creation_date: 2013-04-18T13:25:33Z @@ -101873,8 +101342,8 @@ namespace: biological_process def: "The process in which a precursor cell type acquires the specialized features of a Langerhans cell." [GOC:dph, PMID:22729249] is_a: GO:0043011 ! myeloid dendritic cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000453 ! Langerhans cell -relationship: results_in_acquisition_of_features_of CL:0000453 ! Langerhans cell +intersection_of: RO:0002315 CL:0000453 ! results in acquisition of features of Langerhans cell +relationship: RO:0002315 CL:0000453 ! results in acquisition of features of Langerhans cell created_by: dph creation_date: 2013-04-18T13:29:07Z @@ -101885,8 +101354,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a hepatic stellate cell." [GOC:dph, PMID:9407545] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000632 ! hepatic stellate cell -relationship: results_in_acquisition_of_features_of CL:0000632 ! hepatic stellate cell +intersection_of: RO:0002315 CL:0000632 ! results in acquisition of features of hepatic stellate cell +relationship: RO:0002315 CL:0000632 ! results in acquisition of features of hepatic stellate cell created_by: dph creation_date: 2013-04-18T13:36:08Z @@ -101900,8 +101369,8 @@ synonym: "cilium resorption" EXACT [GOC:dph] is_a: GO:0044782 ! cilium organization is_a: GO:1903008 ! organelle disassembly intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0005929 ! cilium -relationship: results_in_disassembly_of GO:0005929 ! cilium +intersection_of: RO:0002590 GO:0005929 ! results in disassembly of cilium +relationship: RO:0002590 GO:0005929 ! results in disassembly of cilium created_by: dph creation_date: 2013-04-18T14:59:59Z @@ -101912,9 +101381,9 @@ namespace: biological_process def: "The process whose specific outcome is the formation of the central canal of the spinal cord from its formation to the mature structure. The central canal is a spinal cord structure that is part of the ventricular system and is filled with cerebral-spinal fluid and runs the length of the spinal cord." [GOC:cvs, GOC:dph, PMID:23409159] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002291 ! central canal of spinal cord +intersection_of: RO:0002296 UBERON:0002291 ! results in development of central canal of spinal cord relationship: part_of GO:0021510 ! spinal cord development -relationship: results_in_development_of UBERON:0002291 ! central canal of spinal cord +relationship: RO:0002296 UBERON:0002291 ! results in development of central canal of spinal cord created_by: dph creation_date: 2013-04-20T08:18:31Z @@ -101925,8 +101394,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the hindgut over time, from its formation to the mature structure. The hindgut is part of the alimentary canal that lies posterior to the midgut." [GOC:dph] is_a: GO:0048565 ! digestive tract development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001046 ! hindgut -relationship: results_in_development_of UBERON:0001046 ! hindgut +intersection_of: RO:0002296 UBERON:0001046 ! results in development of hindgut +relationship: RO:0002296 UBERON:0001046 ! results in development of hindgut created_by: dph creation_date: 2013-06-14T11:22:21Z @@ -101938,8 +101407,8 @@ def: "The regulated release of acetylcholine by a cell." [GOC:dph] is_a: GO:0015870 ! acetylcholine transport is_a: GO:0023061 ! signal release intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:15355 ! acetylcholine -relationship: has_primary_input CHEBI:15355 ! acetylcholine +intersection_of: RO:0004009 CHEBI:15355 ! has primary input acetylcholine +relationship: RO:0004009 CHEBI:15355 ! has primary input acetylcholine created_by: dph creation_date: 2013-06-21T15:40:39Z @@ -101951,9 +101420,9 @@ def: "The regulated release of dopamine by a cell in which the dopamine acts as is_a: GO:0007269 ! neurotransmitter secretion is_a: GO:0099124 ! axonal dopamine secretion intersection_of: GO:0007269 ! neurotransmitter secretion -intersection_of: has_primary_input CHEBI:59905 ! dopaminium(1+) -relationship: has_primary_input CHEBI:59905 ! dopaminium(1+) +intersection_of: RO:0004009 CHEBI:59905 ! has primary input dopaminium(1+) relationship: part_of GO:0001963 ! synaptic transmission, dopaminergic +relationship: RO:0004009 CHEBI:59905 ! has primary input dopaminium(1+) created_by: dph creation_date: 2013-06-21T15:43:15Z @@ -101966,8 +101435,8 @@ synonym: "noradrenaline secretion, neurotransmission" EXACT [GOC:dph] is_a: GO:0048243 ! norepinephrine secretion is_a: GO:0160043 ! catecholamine secretion, neurotransmission intersection_of: GO:0007269 ! neurotransmitter secretion -intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) -relationship: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) +intersection_of: RO:0004009 CHEBI:72587 ! has primary input (R)-noradrenaline(1+) +relationship: RO:0004009 CHEBI:72587 ! has primary input (R)-noradrenaline(1+) created_by: dph creation_date: 2013-06-21T16:05:08Z @@ -101979,9 +101448,9 @@ def: "The regulated release of gamma-aminobutyric acid by a cell, in which the g is_a: GO:0007269 ! neurotransmitter secretion is_a: GO:0014051 ! gamma-aminobutyric acid secretion intersection_of: GO:0007269 ! neurotransmitter secretion -intersection_of: has_primary_input CHEBI:59888 ! gamma-aminobutyric acid zwitterion -relationship: has_primary_input CHEBI:59888 ! gamma-aminobutyric acid zwitterion +intersection_of: RO:0004009 CHEBI:59888 ! has primary input gamma-aminobutyric acid zwitterion relationship: part_of GO:0051932 ! synaptic transmission, GABAergic +relationship: RO:0004009 CHEBI:59888 ! has primary input gamma-aminobutyric acid zwitterion created_by: dph creation_date: 2013-06-21T16:10:50Z @@ -101994,9 +101463,9 @@ is_a: GO:0007269 ! neurotransmitter secretion is_a: GO:0014047 ! glutamate secretion is_a: GO:0051938 ! L-glutamate import intersection_of: GO:0007269 ! neurotransmitter secretion -intersection_of: has_primary_input CHEBI:29985 ! L-glutamate(1-) -relationship: has_primary_input CHEBI:29985 ! L-glutamate(1-) +intersection_of: RO:0004009 CHEBI:29985 ! has primary input L-glutamate(1-) relationship: part_of GO:0035249 ! synaptic transmission, glutamatergic +relationship: RO:0004009 CHEBI:29985 ! has primary input L-glutamate(1-) created_by: dph creation_date: 2013-06-21T16:14:47Z @@ -102009,9 +101478,9 @@ synonym: "ganglia development" RELATED [GOC:dph] synonym: "gangliogenesis" NARROW [GOC:BHF, GOC:rl] is_a: GO:0009888 ! tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000045 ! ganglion +intersection_of: RO:0002296 UBERON:0000045 ! results in development of ganglion relationship: part_of GO:0007399 ! nervous system development -relationship: results_in_development_of UBERON:0000045 ! ganglion +relationship: RO:0002296 UBERON:0000045 ! results in development of ganglion created_by: dph creation_date: 2013-07-10T08:36:12Z @@ -102023,9 +101492,9 @@ def: "The process whose specific outcome is the progression of a sympathetic gan synonym: "sympathetic ganglia development" RELATED [GOC:dph] is_a: GO:0061548 ! ganglion development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001806 ! sympathetic ganglion +intersection_of: RO:0002296 UBERON:0001806 ! results in development of sympathetic ganglion relationship: part_of GO:0048485 ! sympathetic nervous system development -relationship: results_in_development_of UBERON:0001806 ! sympathetic ganglion +relationship: RO:0002296 UBERON:0001806 ! results in development of sympathetic ganglion created_by: dph creation_date: 2013-07-10T08:38:01Z @@ -102037,9 +101506,9 @@ def: "The process whose specific outcome is the progression of a cranial ganglio synonym: "cranial ganglia development" RELATED [GOC:dph] is_a: GO:0061548 ! ganglion development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001714 ! cranial ganglion +intersection_of: RO:0002296 UBERON:0001714 ! results in development of cranial ganglion relationship: part_of GO:0021545 ! cranial nerve development -relationship: results_in_development_of UBERON:0001714 ! cranial ganglion +relationship: RO:0002296 UBERON:0001714 ! results in development of cranial ganglion created_by: dph creation_date: 2013-07-10T08:40:14Z @@ -102051,8 +101520,8 @@ def: "The process whose specific outcome is the progression of a trigeminal gang synonym: "trigeminal ganglia development" RELATED [GOC:dph] is_a: GO:0061550 ! cranial ganglion development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001675 ! trigeminal ganglion -relationship: results_in_development_of UBERON:0001675 ! trigeminal ganglion +intersection_of: RO:0002296 UBERON:0001675 ! results in development of trigeminal ganglion +relationship: RO:0002296 UBERON:0001675 ! results in development of trigeminal ganglion created_by: dph creation_date: 2013-07-10T08:42:19Z @@ -102064,9 +101533,9 @@ def: "The process in which the anatomical structures of ganglion are generated a synonym: "ganglia morphogenesis" RELATED [GOC:dph] is_a: GO:0048729 ! tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000045 ! ganglion +intersection_of: RO:0002298 UBERON:0000045 ! results in morphogenesis of ganglion relationship: part_of GO:0061548 ! ganglion development -relationship: results_in_morphogenesis_of UBERON:0000045 ! ganglion +relationship: RO:0002298 UBERON:0000045 ! results in morphogenesis of ganglion created_by: dph creation_date: 2013-07-10T08:44:57Z @@ -102078,9 +101547,9 @@ def: "A developmental process, independent of morphogenetic (shape) change, that synonym: "ganglia maturation" RELATED [GOC:dph] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0071695 ! anatomical structure maturation -intersection_of: results_in_maturation_of UBERON:0000045 ! ganglion +intersection_of: RO:0002299 UBERON:0000045 ! results in maturation of ganglion relationship: part_of GO:0061548 ! ganglion development -relationship: results_in_maturation_of UBERON:0000045 ! ganglion +relationship: RO:0002299 UBERON:0000045 ! results in maturation of ganglion created_by: dph creation_date: 2013-07-10T08:45:59Z @@ -102092,9 +101561,9 @@ def: "The process that gives rise to ganglion. This process pertains to the init synonym: "ganglia formation" RELATED [GOC:dph] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000045 ! ganglion +intersection_of: RO:0002297 UBERON:0000045 ! results in formation of anatomical entity ganglion relationship: part_of GO:0061552 ! ganglion morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0000045 ! ganglion +relationship: RO:0002297 UBERON:0000045 ! results in formation of anatomical entity ganglion created_by: dph creation_date: 2013-07-10T08:51:50Z @@ -102106,10 +101575,10 @@ def: "The process in which the anatomical structure of a trigeminal ganglion is synonym: "trigeminal ganglia morphogenesis" RELATED [GOC:dph] is_a: GO:0061559 ! cranial ganglion morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001675 ! trigeminal ganglion +intersection_of: RO:0002298 UBERON:0001675 ! results in morphogenesis of trigeminal ganglion relationship: part_of GO:0021636 ! trigeminal nerve morphogenesis relationship: part_of GO:0061551 ! trigeminal ganglion development -relationship: results_in_morphogenesis_of UBERON:0001675 ! trigeminal ganglion +relationship: RO:0002298 UBERON:0001675 ! results in morphogenesis of trigeminal ganglion created_by: dph creation_date: 2013-07-10T08:57:12Z @@ -102121,10 +101590,10 @@ def: "A developmental process, independent of morphogenetic (shape) change, that synonym: "trigeminal ganglia maturation" RELATED [GOC:dph] is_a: GO:0061558 ! cranial ganglion maturation intersection_of: GO:0071695 ! anatomical structure maturation -intersection_of: results_in_maturation_of UBERON:0001675 ! trigeminal ganglion +intersection_of: RO:0002299 UBERON:0001675 ! results in maturation of trigeminal ganglion relationship: part_of GO:0021635 ! trigeminal nerve maturation relationship: part_of GO:0061551 ! trigeminal ganglion development -relationship: results_in_maturation_of UBERON:0001675 ! trigeminal ganglion +relationship: RO:0002299 UBERON:0001675 ! results in maturation of trigeminal ganglion created_by: dph creation_date: 2013-07-10T08:58:24Z @@ -102136,10 +101605,10 @@ def: "A developmental process, independent of morphogenetic (shape) change, that synonym: "cranial ganglia maturation" RELATED [GOC:dph] is_a: GO:0061553 ! ganglion maturation intersection_of: GO:0071695 ! anatomical structure maturation -intersection_of: results_in_maturation_of UBERON:0001714 ! cranial ganglion +intersection_of: RO:0002299 UBERON:0001714 ! results in maturation of cranial ganglion relationship: part_of GO:0021605 ! cranial nerve maturation relationship: part_of GO:0061550 ! cranial ganglion development -relationship: results_in_maturation_of UBERON:0001714 ! cranial ganglion +relationship: RO:0002299 UBERON:0001714 ! results in maturation of cranial ganglion created_by: dph creation_date: 2013-07-10T08:59:52Z @@ -102151,10 +101620,10 @@ def: "The process in which the anatomical structure of a cranial ganglion is gen synonym: "cranial ganglia morphogenesis" RELATED [GOC:dph] is_a: GO:0061552 ! ganglion morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001714 ! cranial ganglion +intersection_of: RO:0002298 UBERON:0001714 ! results in morphogenesis of cranial ganglion relationship: part_of GO:0021602 ! cranial nerve morphogenesis relationship: part_of GO:0061550 ! cranial ganglion development -relationship: results_in_morphogenesis_of UBERON:0001714 ! cranial ganglion +relationship: RO:0002298 UBERON:0001714 ! results in morphogenesis of cranial ganglion created_by: dph creation_date: 2013-07-10T09:02:15Z @@ -102166,9 +101635,9 @@ def: "The process that gives rise to a cranial ganglion. This process pertains t synonym: "cranial ganglia formation" RELATED [GOC:dph] is_a: GO:0061554 ! ganglion formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001714 ! cranial ganglion +intersection_of: RO:0002297 UBERON:0001714 ! results in formation of anatomical entity cranial ganglion relationship: part_of GO:0061559 ! cranial ganglion morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001714 ! cranial ganglion +relationship: RO:0002297 UBERON:0001714 ! results in formation of anatomical entity cranial ganglion created_by: dph creation_date: 2013-07-10T09:07:27Z @@ -102180,9 +101649,9 @@ def: "The process that gives rise to the trigeminal ganglion. This process perta synonym: "trigeminal ganglia formation" RELATED [GOC:dph] is_a: GO:0061560 ! cranial ganglion formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001675 ! trigeminal ganglion +intersection_of: RO:0002297 UBERON:0001675 ! results in formation of anatomical entity trigeminal ganglion relationship: part_of GO:0061556 ! trigeminal ganglion morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001675 ! trigeminal ganglion +relationship: RO:0002297 UBERON:0001675 ! results in formation of anatomical entity trigeminal ganglion created_by: dph creation_date: 2013-07-10T09:08:13Z @@ -102203,8 +101672,8 @@ def: "A process that results in the assembly, arrangement of constituent parts, synonym: "actin filament cable organization" RELATED [GOC:dph] is_a: GO:0007015 ! actin filament organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0032432 ! actin filament bundle -relationship: results_in_organization_of GO:0032432 ! actin filament bundle +intersection_of: RO:0002592 GO:0032432 ! results in organization of actin filament bundle +relationship: RO:0002592 GO:0032432 ! results in organization of actin filament bundle created_by: dph creation_date: 2013-08-02T11:24:11Z @@ -102215,8 +101684,8 @@ namespace: biological_process def: "The orderly movement of a colonic epithelial cell from one site to another, often during the development of a multicellular organism." [GOC:dph] is_a: GO:0061582 ! intestinal epithelial cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0011108 ! colon epithelial cell -relationship: results_in_movement_of CL:0011108 ! colon epithelial cell +intersection_of: RO:0002565 CL:0011108 ! results in movement of colon epithelial cell +relationship: RO:0002565 CL:0011108 ! results in movement of colon epithelial cell created_by: dph creation_date: 2013-12-23T07:26:54Z @@ -102227,8 +101696,8 @@ namespace: biological_process def: "The orderly movement of a corneal epithelial cell from one site to another, often during the development of a multicellular organism." [GOC:dph] is_a: GO:0010631 ! epithelial cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000575 ! corneal epithelial cell -relationship: results_in_movement_of CL:0000575 ! corneal epithelial cell +intersection_of: RO:0002565 CL:0000575 ! results in movement of corneal epithelial cell +relationship: RO:0002565 CL:0000575 ! results in movement of corneal epithelial cell created_by: dph creation_date: 2013-12-23T07:28:29Z @@ -102239,8 +101708,8 @@ namespace: biological_process def: "The orderly movement of an intestinal epithelial cell from one site to another, often during the development of a multicellular organism." [GOC:dph] is_a: GO:0010631 ! epithelial cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0002563 ! intestinal epithelial cell -relationship: results_in_movement_of CL:0002563 ! intestinal epithelial cell +intersection_of: RO:0002565 CL:0002563 ! results in movement of intestinal epithelial cell +relationship: RO:0002565 CL:0002563 ! results in movement of intestinal epithelial cell created_by: dph creation_date: 2013-12-23T07:30:55Z @@ -102252,9 +101721,9 @@ def: "The process in which the anatomical structures of a pharyngeal arch artery synonym: "aortic arch artery morphogenesis" BROAD [GOC:dph] is_a: GO:0048844 ! artery morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004363 ! pharyngeal arch artery +intersection_of: RO:0002298 UBERON:0004363 ! results in morphogenesis of pharyngeal arch artery relationship: part_of GO:0060037 ! pharyngeal system development -relationship: results_in_morphogenesis_of UBERON:0004363 ! pharyngeal arch artery +relationship: RO:0002298 UBERON:0004363 ! results in morphogenesis of pharyngeal arch artery created_by: dph creation_date: 2014-05-09T15:34:06Z @@ -102283,9 +101752,9 @@ namespace: biological_process def: "The process in which the anatomical structures of a seminal vesicle are generated and organized." [GOC:dph] is_a: GO:0022612 ! gland morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000998 ! seminal vesicle +intersection_of: RO:0002298 UBERON:0000998 ! results in morphogenesis of seminal vesicle relationship: part_of GO:0061107 ! seminal vesicle development -relationship: results_in_morphogenesis_of UBERON:0000998 ! seminal vesicle +relationship: RO:0002298 UBERON:0000998 ! results in morphogenesis of seminal vesicle created_by: dph creation_date: 2015-03-04T13:33:49Z @@ -102313,8 +101782,8 @@ namespace: biological_process def: "Any process that reduces or removes the toxicity of inorganic compounds. These include transport of such compounds away from sensitive areas and to compartments or complexes whose purpose is sequestration of inorganic compounds." [GOC:vw] is_a: GO:0098754 ! detoxification intersection_of: GO:0098754 ! detoxification -intersection_of: has_primary_input CHEBI:24835 ! inorganic molecular entity -relationship: has_primary_input CHEBI:24835 ! inorganic molecular entity +intersection_of: RO:0004009 CHEBI:24835 ! has primary input inorganic molecular entity +relationship: RO:0004009 CHEBI:24835 ! has primary input inorganic molecular entity created_by: dph creation_date: 2015-03-09T09:16:23Z @@ -102337,9 +101806,9 @@ namespace: biological_process def: "The step in the formation of the neural tube, where the paired anterior neural folds are brought together and fuse at the dorsal midline." [GOC:BHF, GOC:dph, GOC:hal, PMID:17286298] is_a: GO:0060606 ! tube closure intersection_of: GO:0060606 ! tube closure -intersection_of: has_primary_input UBERON:0003080 ! anterior neural tube -relationship: has_primary_input UBERON:0003080 ! anterior neural tube +intersection_of: RO:0004009 UBERON:0003080 ! has primary input anterior neural tube relationship: part_of GO:0001843 ! neural tube closure +relationship: RO:0004009 UBERON:0003080 ! has primary input anterior neural tube created_by: dph creation_date: 2015-06-23T10:13:41Z @@ -102348,12 +101817,13 @@ id: GO:0061725 name: cytosolic lipolysis namespace: biological_process def: "The chemical reactions and pathways resulting in the breakdown of lipid droplets and hydrolysis of stored triglycerides occurring through the orchestrated activation of cytosolic lipases." [GOC:autophagy] -is_a: GO:0044242 ! cellular lipid catabolic process +is_a: GO:0016042 ! lipid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:18059 ! lipid -intersection_of: occurs_in GO:0005829 ! cytosol -relationship: has_primary_input CHEBI:18059 ! lipid -relationship: occurs_in GO:0005829 ! cytosol +intersection_of: BFO:0000066 GO:0005829 ! occurs in cytosol +intersection_of: RO:0004009 CHEBI:18059 ! has primary input lipid +relationship: BFO:0000066 GO:0005829 ! occurs in cytosol +relationship: RO:0004009 CHEBI:18059 ! has primary input lipid +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI created_by: dph creation_date: 2015-07-08T13:42:15Z @@ -102365,8 +101835,8 @@ def: "Steps required to transform an immature secretory vesicle into a mature se is_a: GO:0033363 ! secretory granule organization is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of GO:0030141 ! secretory granule -relationship: results_in_maturation_of GO:0030141 ! secretory granule +intersection_of: RO:0002299 GO:0030141 ! results in maturation of secretory granule +relationship: RO:0002299 GO:0030141 ! results in maturation of secretory granule created_by: dph creation_date: 2016-09-09T13:24:34Z @@ -102386,8 +101856,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of neuroblast migration." [PMID:23149556] is_a: GO:0030334 ! regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0097402 ! neuroblast migration -relationship: regulates GO:0097402 ! neuroblast migration +intersection_of: RO:0002211 GO:0097402 ! regulates (processual) neuroblast migration +relationship: RO:0002211 GO:0097402 ! regulates (processual) neuroblast migration created_by: dph creation_date: 2017-03-08T18:17:07Z @@ -102399,8 +101869,8 @@ def: "Any process that activates or increases the frequency, rate or extent of n is_a: GO:0030335 ! positive regulation of cell migration is_a: GO:0061853 ! regulation of neuroblast migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0097402 ! neuroblast migration -relationship: positively_regulates GO:0097402 ! neuroblast migration +intersection_of: RO:0002213 GO:0097402 ! positively regulates neuroblast migration +relationship: RO:0002213 GO:0097402 ! positively regulates neuroblast migration created_by: dph creation_date: 2017-03-08T18:22:30Z @@ -102412,8 +101882,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0030336 ! negative regulation of cell migration is_a: GO:0061853 ! regulation of neuroblast migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0097402 ! neuroblast migration -relationship: negatively_regulates GO:0097402 ! neuroblast migration +intersection_of: RO:0002212 GO:0097402 ! negatively regulates neuroblast migration +relationship: RO:0002212 GO:0097402 ! negatively regulates neuroblast migration created_by: dph creation_date: 2017-03-08T18:26:21Z @@ -102425,12 +101895,12 @@ def: "A process in which a calcium ion is transported from one side of a Golgi m is_a: GO:0032472 ! Golgi calcium ion transport is_a: GO:0070588 ! calcium ion transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29108 ! calcium(2+) -intersection_of: results_in_transport_across GO:0016020 ! membrane -intersection_of: results_in_transport_to_from_or_in GO:0005794 ! Golgi apparatus -relationship: has_primary_input CHEBI:29108 ! calcium(2+) -relationship: results_in_transport_across GO:0016020 ! membrane -relationship: results_in_transport_to_from_or_in GO:0005794 ! Golgi apparatus +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0002344 GO:0005794 ! results in transport to from or in Golgi apparatus +intersection_of: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0002344 GO:0005794 ! results in transport to from or in Golgi apparatus +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) created_by: dph creation_date: 2017-03-14T16:08:23Z @@ -102441,8 +101911,8 @@ namespace: biological_process def: "The orderly movement of a hepatic stellate cell from one site to another." [PMID:24204762] is_a: GO:0010761 ! fibroblast migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000632 ! hepatic stellate cell -relationship: results_in_movement_of CL:0000632 ! hepatic stellate cell +intersection_of: RO:0002565 CL:0000632 ! results in movement of hepatic stellate cell +relationship: RO:0002565 CL:0000632 ! results in movement of hepatic stellate cell created_by: dph creation_date: 2017-05-01T13:01:40Z @@ -102453,8 +101923,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of hepatic stellate cell migration." [PMID:24204762] is_a: GO:0010762 ! regulation of fibroblast migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061868 ! hepatic stellate cell migration -relationship: regulates GO:0061868 ! hepatic stellate cell migration +intersection_of: RO:0002211 GO:0061868 ! regulates (processual) hepatic stellate cell migration +relationship: RO:0002211 GO:0061868 ! regulates (processual) hepatic stellate cell migration created_by: dph creation_date: 2017-05-01T13:04:20Z @@ -102466,8 +101936,8 @@ def: "Any process that increases the frequency, rate or extent of hepatic stella is_a: GO:0010763 ! positive regulation of fibroblast migration is_a: GO:0061869 ! regulation of hepatic stellate cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061868 ! hepatic stellate cell migration -relationship: positively_regulates GO:0061868 ! hepatic stellate cell migration +intersection_of: RO:0002213 GO:0061868 ! positively regulates hepatic stellate cell migration +relationship: RO:0002213 GO:0061868 ! positively regulates hepatic stellate cell migration created_by: dph creation_date: 2017-05-01T13:17:23Z @@ -102479,8 +101949,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0010764 ! negative regulation of fibroblast migration is_a: GO:0061869 ! regulation of hepatic stellate cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0061868 ! hepatic stellate cell migration -relationship: negatively_regulates GO:0061868 ! hepatic stellate cell migration +intersection_of: RO:0002212 GO:0061868 ! negatively regulates hepatic stellate cell migration +relationship: RO:0002212 GO:0061868 ! negatively regulates hepatic stellate cell migration created_by: dph creation_date: 2017-05-01T13:20:51Z @@ -102492,9 +101962,9 @@ def: "Any process that modulates the frequency, rate or extent of astrocyte acti is_a: GO:0048710 ! regulation of astrocyte differentiation is_a: GO:0050865 ! regulation of cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048143 ! astrocyte activation -relationship: regulates GO:0048143 ! astrocyte activation -relationship: regulates GO:0048708 ! astrocyte differentiation +intersection_of: RO:0002211 GO:0048143 ! regulates (processual) astrocyte activation +relationship: RO:0002211 GO:0048143 ! regulates (processual) astrocyte activation +relationship: RO:0002211 GO:0048708 ! regulates (processual) astrocyte differentiation created_by: dph creation_date: 2017-06-01T22:26:29Z @@ -102508,10 +101978,10 @@ is_a: GO:0050866 ! negative regulation of cell activation is_a: GO:0061888 ! regulation of astrocyte activation is_a: GO:0150079 ! negative regulation of neuroinflammatory response intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048143 ! astrocyte activation -relationship: negatively_regulates GO:0048143 ! astrocyte activation -relationship: negatively_regulates GO:0048708 ! astrocyte differentiation -relationship: negatively_regulates GO:0150076 ! neuroinflammatory response +intersection_of: RO:0002212 GO:0048143 ! negatively regulates astrocyte activation +relationship: RO:0002212 GO:0048143 ! negatively regulates astrocyte activation +relationship: RO:0002212 GO:0048708 ! negatively regulates astrocyte differentiation +relationship: RO:0002212 GO:0150076 ! negatively regulates neuroinflammatory response created_by: dph creation_date: 2017-06-01T22:29:43Z @@ -102525,10 +101995,10 @@ is_a: GO:0050867 ! positive regulation of cell activation is_a: GO:0061888 ! regulation of astrocyte activation is_a: GO:0150078 ! positive regulation of neuroinflammatory response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048143 ! astrocyte activation -relationship: positively_regulates GO:0048143 ! astrocyte activation -relationship: positively_regulates GO:0048708 ! astrocyte differentiation -relationship: positively_regulates GO:0150076 ! neuroinflammatory response +intersection_of: RO:0002213 GO:0048143 ! positively regulates astrocyte activation +relationship: RO:0002213 GO:0048143 ! positively regulates astrocyte activation +relationship: RO:0002213 GO:0048708 ! positively regulates astrocyte differentiation +relationship: RO:0002213 GO:0150076 ! positively regulates neuroinflammatory response created_by: dph creation_date: 2017-06-01T22:31:50Z @@ -102539,9 +102009,9 @@ namespace: biological_process def: "A change in morphology and behavior of a glial cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor." [GOC:aruk, GOC:bc, PMID:18723082] is_a: GO:0001775 ! cell activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000125 ! glial cell -relationship: has_primary_input CL:0000125 ! glial cell +intersection_of: RO:0004009 CL:0000125 ! has primary input glial cell relationship: part_of GO:0150076 ! neuroinflammatory response +relationship: RO:0004009 CL:0000125 ! has primary input glial cell created_by: dph creation_date: 2017-06-13T13:06:23Z @@ -102553,8 +102023,8 @@ def: "Any process that modulates the frequency, rate or extent of an adenine bio is_a: GO:0006141 ! regulation of purine nucleobase metabolic process is_a: GO:0009889 ! regulation of biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0046084 ! adenine biosynthetic process -relationship: regulates GO:0046084 ! adenine biosynthetic process +intersection_of: RO:0002211 GO:0046084 ! regulates (processual) adenine biosynthetic process +relationship: RO:0002211 GO:0046084 ! regulates (processual) adenine biosynthetic process created_by: dph creation_date: 2017-09-05T14:58:46Z @@ -102566,8 +102036,8 @@ def: "A process in which a protein is transported to or maintained in a location synonym: "somatodendritic protein localization" EXACT [] is_a: GO:0008104 ! protein localization intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0036477 ! somatodendritic compartment -relationship: has_target_end_location GO:0036477 ! somatodendritic compartment +intersection_of: RO:0002339 GO:0036477 ! has target end location somatodendritic compartment +relationship: RO:0002339 GO:0036477 ! has target end location somatodendritic compartment created_by: dph creation_date: 2017-09-08T13:22:26Z @@ -102578,10 +102048,10 @@ namespace: biological_process def: "The directed movement of a protein to a specific location in a plasma membrane." [GOC:dph, GOC:vw] is_a: GO:0090150 ! establishment of protein localization to membrane intersection_of: GO:0045184 ! establishment of protein localization -intersection_of: has_target_end_location GO:0005886 ! plasma membrane -intersection_of: has_target_start_location GO:0005622 ! intracellular anatomical structure -relationship: has_target_end_location GO:0005886 ! plasma membrane -relationship: has_target_start_location GO:0005622 ! intracellular anatomical structure +intersection_of: RO:0002338 GO:0005622 ! has target start location intracellular anatomical structure +intersection_of: RO:0002339 GO:0005886 ! has target end location plasma membrane +relationship: RO:0002338 GO:0005622 ! has target start location intracellular anatomical structure +relationship: RO:0002339 GO:0005886 ! has target end location plasma membrane created_by: dph creation_date: 2017-10-26T12:55:15Z @@ -102592,8 +102062,8 @@ namespace: biological_process def: "The process in which bones are generated and organized as a result of the conversion of another structural tissue into bone." [PMID:29852585] is_a: GO:0060349 ! bone morphogenesis intersection_of: GO:0060349 ! bone morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0012075 ! replacement bone -relationship: results_in_morphogenesis_of UBERON:0012075 ! replacement bone +intersection_of: RO:0002298 UBERON:0012075 ! results in morphogenesis of replacement bone +relationship: RO:0002298 UBERON:0012075 ! results in morphogenesis of replacement bone created_by: dph creation_date: 2018-02-12T18:10:59Z @@ -102604,8 +102074,8 @@ namespace: biological_process def: "The process in which bone which forms superficially in the organism are generated and organized." [PMID:12588850, PMID:15003632] is_a: GO:0061973 ! membrane bone morphogenesis intersection_of: GO:0060349 ! bone morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0008907 ! dermal bone -relationship: results_in_morphogenesis_of UBERON:0008907 ! dermal bone +intersection_of: RO:0002298 UBERON:0008907 ! results in morphogenesis of dermal bone +relationship: RO:0002298 UBERON:0008907 ! results in morphogenesis of dermal bone created_by: dph creation_date: 2018-02-12T18:16:21Z @@ -102616,8 +102086,8 @@ namespace: biological_process def: "The process in which bone which forms deep in the organism are generated and organized." [PMID:14579374] is_a: GO:0060349 ! bone morphogenesis intersection_of: GO:0060349 ! bone morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0007842 ! membrane bone -relationship: results_in_morphogenesis_of UBERON:0007842 ! membrane bone +intersection_of: RO:0002298 UBERON:0007842 ! results in morphogenesis of membrane bone +relationship: RO:0002298 UBERON:0007842 ! results in morphogenesis of membrane bone created_by: dph creation_date: 2018-02-12T18:21:09Z @@ -102629,8 +102099,8 @@ def: "The process in which bones are generated and organized as a result of the is_a: GO:0060350 ! endochondral bone morphogenesis is_a: GO:0061973 ! membrane bone morphogenesis intersection_of: GO:0060349 ! bone morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0008913 ! perichondral bone -relationship: results_in_morphogenesis_of UBERON:0008913 ! perichondral bone +intersection_of: RO:0002298 UBERON:0008913 ! results in morphogenesis of perichondral bone +relationship: RO:0002298 UBERON:0008913 ! results in morphogenesis of perichondral bone created_by: dph creation_date: 2018-02-12T18:26:10Z @@ -102651,8 +102121,8 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of the secondary palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The secondary palate is the part of the palate formed from the fusion of the two palatine shelves, extensions of the maxillary prominences." [PMID:28784960] is_a: GO:0060021 ! roof of mouth development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001716 ! secondary palate -relationship: results_in_development_of UBERON:0001716 ! secondary palate +intersection_of: RO:0002296 UBERON:0001716 ! results in development of secondary palate +relationship: RO:0002296 UBERON:0001716 ! results in development of secondary palate created_by: dph creation_date: 2018-02-26T22:55:20Z @@ -102663,8 +102133,8 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of the primitive palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure." [GOC:dph] is_a: GO:0060021 ! roof of mouth development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0012316 ! primitive palate -relationship: results_in_development_of UBERON:0012316 ! primitive palate +intersection_of: RO:0002296 UBERON:0012316 ! results in development of primitive palate +relationship: RO:0002296 UBERON:0012316 ! results in development of primitive palate created_by: dph creation_date: 2018-02-26T23:00:48Z @@ -102676,8 +102146,8 @@ def: "Any process that modulates the rate, frequency or extent of a small molecu synonym: "regulation of small molecule metabolism" EXACT [] is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0044281 ! small molecule metabolic process -relationship: regulates GO:0044281 ! small molecule metabolic process +intersection_of: RO:0002211 GO:0044281 ! regulates (processual) small molecule metabolic process +relationship: RO:0002211 GO:0044281 ! regulates (processual) small molecule metabolic process created_by: dph creation_date: 2018-03-19T14:11:54Z @@ -102690,8 +102160,8 @@ synonym: "positive regulation of small molecule metabolism" EXACT [] is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0044281 ! small molecule metabolic process -relationship: positively_regulates GO:0044281 ! small molecule metabolic process +intersection_of: RO:0002213 GO:0044281 ! positively regulates small molecule metabolic process +relationship: RO:0002213 GO:0044281 ! positively regulates small molecule metabolic process created_by: dph creation_date: 2018-03-19T14:25:10Z @@ -102704,8 +102174,8 @@ synonym: "negative regulation of small molecule metabolism" EXACT [] is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0044281 ! small molecule metabolic process -relationship: negatively_regulates GO:0044281 ! small molecule metabolic process +intersection_of: RO:0002212 GO:0044281 ! negatively regulates small molecule metabolic process +relationship: RO:0002212 GO:0044281 ! negatively regulates small molecule metabolic process created_by: dph creation_date: 2018-03-19T14:27:23Z @@ -102716,7 +102186,7 @@ namespace: cellular_component def: "An extracellular matrix consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that provides not only essential physical scaffolding for the cellular constituents but can also initiate crucial biochemical and biomechanical cues required for tissue morphogenesis, differentiation and homeostasis. The components are secreted by cells in the vicinity and form a sheet underlying or overlying cells such as endothelial and epithelial cells." [GOC:BHF, GOC:rph, PMID:21123617] is_a: GO:0031012 ! extracellular matrix relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa created_by: dph creation_date: 2018-04-13T12:47:21Z @@ -102729,8 +102199,8 @@ is_a: GO:0033047 ! regulation of mitotic sister chromatid segregation is_a: GO:0051984 ! positive regulation of chromosome segregation is_a: GO:2001252 ! positive regulation of chromosome organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0000070 ! mitotic sister chromatid segregation -relationship: positively_regulates GO:0000070 ! mitotic sister chromatid segregation +intersection_of: RO:0002213 GO:0000070 ! positively regulates mitotic sister chromatid segregation +relationship: RO:0002213 GO:0000070 ! positively regulates mitotic sister chromatid segregation created_by: dph creation_date: 2018-04-23T14:32:23Z @@ -102741,9 +102211,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the stomach over time, from its formation to the mature structure. The stomach is an expanded region of the vertebrate alimentary tract that serves as a food storage compartment and digestive organ." [PMID:11967278] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000945 ! stomach +intersection_of: RO:0002296 UBERON:0000945 ! results in development of stomach relationship: part_of GO:0048565 ! digestive tract development -relationship: results_in_development_of UBERON:0000945 ! stomach +relationship: RO:0002296 UBERON:0000945 ! results in development of stomach created_by: dph creation_date: 2018-11-20T18:15:45Z @@ -102767,8 +102237,8 @@ def: "The chemical reactions and pathways, including anabolism and catabolism, b synonym: "lutein metabolism" EXACT [] is_a: GO:0016122 ! xanthophyll metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:28838 ! lutein -relationship: has_primary_input_or_output CHEBI:28838 ! lutein +intersection_of: RO:0004007 CHEBI:28838 ! has primary input or output lutein +relationship: RO:0004007 CHEBI:28838 ! has primary input or output lutein created_by: dph creation_date: 2019-11-18T15:56:36Z @@ -102783,8 +102253,8 @@ synonym: "lutein formation" EXACT [] is_a: GO:0016123 ! xanthophyll biosynthetic process is_a: GO:0062170 ! lutein metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:28838 ! lutein -relationship: has_primary_output CHEBI:28838 ! lutein +intersection_of: RO:0004008 CHEBI:28838 ! has primary output lutein +relationship: RO:0004008 CHEBI:28838 ! has primary output lutein created_by: dph creation_date: 2019-11-18T16:01:00Z @@ -102799,8 +102269,8 @@ synonym: "lutein degradation" EXACT [] is_a: GO:0016124 ! xanthophyll catabolic process is_a: GO:0062170 ! lutein metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:28838 ! lutein -relationship: has_primary_input CHEBI:28838 ! lutein +intersection_of: RO:0004009 CHEBI:28838 ! has primary input lutein +relationship: RO:0004009 CHEBI:28838 ! has primary input lutein created_by: dph creation_date: 2019-11-18T16:06:07Z @@ -102811,8 +102281,8 @@ namespace: biological_process def: "Any process that regulates the rate, frequency or extent of somatic muscle development." [PMID:16643882, PMID:25758712] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007525 ! somatic muscle development -relationship: regulates GO:0007525 ! somatic muscle development +intersection_of: RO:0002211 GO:0007525 ! regulates (processual) somatic muscle development +relationship: RO:0002211 GO:0007525 ! regulates (processual) somatic muscle development created_by: dph creation_date: 2020-03-13T18:58:37Z @@ -102824,8 +102294,8 @@ def: "Any process that increases the rate, frequency or extent of somatic muscle is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0062223 ! regulation of somatic muscle development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007525 ! somatic muscle development -relationship: positively_regulates GO:0007525 ! somatic muscle development +intersection_of: RO:0002213 GO:0007525 ! positively regulates somatic muscle development +relationship: RO:0002213 GO:0007525 ! positively regulates somatic muscle development created_by: dph creation_date: 2020-03-13T19:03:38Z @@ -102837,8 +102307,8 @@ def: "Any process that decreases the rate, frequency or extent of somatic muscle is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0062223 ! regulation of somatic muscle development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007525 ! somatic muscle development -relationship: negatively_regulates GO:0007525 ! somatic muscle development +intersection_of: RO:0002212 GO:0007525 ! negatively regulates somatic muscle development +relationship: RO:0002212 GO:0007525 ! negatively regulates somatic muscle development created_by: dph creation_date: 2020-03-13T19:06:27Z @@ -102849,8 +102319,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of an ionocyte. Ionocytes are specialized epithelial cells that contribute to osmotic homeostasis." [PMID:17555741] is_a: GO:0030855 ! epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0005006 ! ionocyte -relationship: results_in_acquisition_of_features_of CL:0005006 ! ionocyte +intersection_of: RO:0002315 CL:0005006 ! results in acquisition of features of ionocyte +relationship: RO:0002315 CL:0005006 ! results in acquisition of features of ionocyte created_by: dph creation_date: 2020-04-20T12:30:35Z @@ -102861,8 +102331,8 @@ namespace: biological_process def: "Any process in which a protein is transported to, and/or maintained at the postsynapse, the part of a synapse that is part of the post-synaptic cell." [PMID:31189538] is_a: GO:0035418 ! protein localization to synapse intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0098794 ! postsynapse -relationship: has_target_end_location GO:0098794 ! postsynapse +intersection_of: RO:0002339 GO:0098794 ! has target end location postsynapse +relationship: RO:0002339 GO:0098794 ! has target end location postsynapse created_by: dph creation_date: 2020-04-20T13:58:43Z @@ -102878,12 +102348,12 @@ synonym: "intracellular protein transport across a membrane" EXACT [] is_a: GO:0006886 ! intracellular protein transport is_a: GO:0071806 ! protein transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input PR:000000001 ! protein -intersection_of: occurs_in GO:0005622 ! intracellular anatomical structure -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input PR:000000001 ! protein -relationship: occurs_in GO:0005622 ! intracellular anatomical structure -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: BFO:0000066 GO:0005622 ! occurs in intracellular anatomical structure +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: BFO:0000066 GO:0005622 ! occurs in intracellular anatomical structure +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 PR:000000001 ! has primary input protein [Term] id: GO:0065003 @@ -102911,22 +102381,10 @@ synonym: "protein complex formation" RELATED [] is_a: GO:0022607 ! cellular component assembly is_a: GO:0043933 ! protein-containing complex organization intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0032991 ! protein-containing complex -relationship: results_in_assembly_of GO:0032991 ! protein-containing complex +intersection_of: RO:0002588 GO:0032991 ! results in assembly of protein-containing complex +relationship: RO:0002588 GO:0032991 ! results in assembly of protein-containing complex property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22580" xsd:anyURI -[Term] -id: GO:0065004 -name: protein-DNA complex assembly -namespace: biological_process -def: "The aggregation, arrangement and bonding together of proteins and DNA molecules to form a protein-DNA complex." [GOC:jl] -synonym: "DNA-protein complex assembly" EXACT [GOC:mah] -is_a: GO:0065003 ! protein-containing complex assembly -is_a: GO:0071824 ! protein-DNA complex organization -intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0032993 ! protein-DNA complex -relationship: results_in_assembly_of GO:0032993 ! protein-DNA complex - [Term] id: GO:0065007 name: biological regulation @@ -102952,14 +102410,14 @@ id: GO:0065009 name: regulation of molecular function namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding." [GOC:isa_complete] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate subset: goslim_pir subset: goslim_plant synonym: "regulation of a molecular function" EXACT [] is_a: GO:0065007 ! biological regulation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003674 ! molecular_function -relationship: regulates GO:0003674 ! molecular_function +intersection_of: RO:0002211 GO:0003674 ! regulates (processual) molecular_function +relationship: RO:0002211 GO:0003674 ! regulates (processual) molecular_function [Term] id: GO:0065010 @@ -102991,8 +102449,8 @@ def: "The cellular homeostatic process that preserves a neuron in a stable, diff synonym: "neuron maintenance" EXACT [] is_a: GO:0019725 ! cellular homeostasis intersection_of: GO:0019725 ! cellular homeostasis -intersection_of: occurs_in CL:0000540 ! neuron -relationship: occurs_in CL:0000540 ! neuron +intersection_of: BFO:0000066 CL:0000540 ! occurs in neuron +relationship: BFO:0000066 CL:0000540 ! occurs in neuron property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24218" xsd:anyURI [Term] @@ -103002,8 +102460,8 @@ namespace: molecular_function def: "Binding to fibrinogen, a highly soluble hexameric glycoprotein complex that is found in blood plasma and is converted to fibrin by thrombin in the coagulation cascade." [GOC:BHF, GOC:mah, GOC:vk] is_a: GO:0044877 ! protein-containing complex binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input GO:0005577 ! fibrinogen complex -relationship: has_primary_input GO:0005577 ! fibrinogen complex +intersection_of: RO:0004009 GO:0005577 ! has primary input fibrinogen complex +relationship: RO:0004009 GO:0005577 ! has primary input fibrinogen complex [Term] id: GO:0070062 @@ -103022,8 +102480,8 @@ namespace: biological_process def: "The regulated release of glucagon from secretory granules in the A (alpha) cells of the pancreas (islets of Langerhans)." [GOC:BHF, GOC:rl] is_a: GO:0030072 ! peptide hormone secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:5391 ! glucagon -relationship: has_primary_input CHEBI:5391 ! glucagon +intersection_of: RO:0004009 CHEBI:5391 ! has primary input glucagon +relationship: RO:0004009 CHEBI:5391 ! has primary input glucagon [Term] id: GO:0070092 @@ -103032,8 +102490,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the regulated release of glucagon." [GOC:BHF, GOC:mah] is_a: GO:0090276 ! regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070091 ! glucagon secretion -relationship: regulates GO:0070091 ! glucagon secretion +intersection_of: RO:0002211 GO:0070091 ! regulates (processual) glucagon secretion +relationship: RO:0002211 GO:0070091 ! regulates (processual) glucagon secretion [Term] id: GO:0070093 @@ -103047,8 +102505,8 @@ synonym: "inhibition of glucagon secretion" NARROW [] is_a: GO:0070092 ! regulation of glucagon secretion is_a: GO:0090278 ! negative regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070091 ! glucagon secretion -relationship: negatively_regulates GO:0070091 ! glucagon secretion +intersection_of: RO:0002212 GO:0070091 ! negatively regulates glucagon secretion +relationship: RO:0002212 GO:0070091 ! negatively regulates glucagon secretion [Term] id: GO:0070094 @@ -103063,8 +102521,8 @@ synonym: "upregulation of glucagon secretion" EXACT [] is_a: GO:0070092 ! regulation of glucagon secretion is_a: GO:0090277 ! positive regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070091 ! glucagon secretion -relationship: positively_regulates GO:0070091 ! glucagon secretion +intersection_of: RO:0002213 GO:0070091 ! positively regulates glucagon secretion +relationship: RO:0002213 GO:0070091 ! positively regulates glucagon secretion [Term] id: GO:0070121 @@ -103074,8 +102532,8 @@ def: "The progression of the Kupffer's vesicle over time from its initial format synonym: "KV development" EXACT [GOC:dgh] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:2000001 ! Kupffer's vesicle -relationship: results_in_development_of UBERON:2000001 ! Kupffer's vesicle +intersection_of: RO:0002296 UBERON:2000001 ! results in development of Kupffer's vesicle +relationship: RO:0002296 UBERON:2000001 ! results in development of Kupffer's vesicle [Term] id: GO:0070160 @@ -103102,8 +102560,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of biomineral tissue development, the formation of hard tissues that consist mainly of inorganic compounds." [GOC:mah] is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0031214 ! biomineral tissue development -relationship: regulates GO:0031214 ! biomineral tissue development +intersection_of: RO:0002211 GO:0031214 ! regulates (processual) biomineral tissue development +relationship: RO:0002211 GO:0031214 ! regulates (processual) biomineral tissue development [Term] id: GO:0070168 @@ -103113,8 +102571,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0070167 ! regulation of biomineral tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0031214 ! biomineral tissue development -relationship: negatively_regulates GO:0031214 ! biomineral tissue development +intersection_of: RO:0002212 GO:0031214 ! negatively regulates biomineral tissue development +relationship: RO:0002212 GO:0031214 ! negatively regulates biomineral tissue development [Term] id: GO:0070169 @@ -103124,8 +102582,8 @@ def: "Any process that activates or increases the frequency, rate or extent of b is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0070167 ! regulation of biomineral tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0031214 ! biomineral tissue development -relationship: positively_regulates GO:0031214 ! biomineral tissue development +intersection_of: RO:0002213 GO:0031214 ! positively regulates biomineral tissue development +relationship: RO:0002213 GO:0031214 ! positively regulates biomineral tissue development [Term] id: GO:0070170 @@ -103134,8 +102592,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of tooth mineralization, the deposition of calcium salts in tooth structures." [GOC:BHF, GOC:mah] is_a: GO:0070167 ! regulation of biomineral tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0034505 ! tooth mineralization -relationship: regulates GO:0034505 ! tooth mineralization +intersection_of: RO:0002211 GO:0034505 ! regulates (processual) tooth mineralization +relationship: RO:0002211 GO:0034505 ! regulates (processual) tooth mineralization [Term] id: GO:0070171 @@ -103145,8 +102603,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0070168 ! negative regulation of biomineral tissue development is_a: GO:0070170 ! regulation of tooth mineralization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0034505 ! tooth mineralization -relationship: negatively_regulates GO:0034505 ! tooth mineralization +intersection_of: RO:0002212 GO:0034505 ! negatively regulates tooth mineralization +relationship: RO:0002212 GO:0034505 ! negatively regulates tooth mineralization [Term] id: GO:0070172 @@ -103156,8 +102614,8 @@ def: "Any process that activates or increases the frequency, rate or extent of t is_a: GO:0070169 ! positive regulation of biomineral tissue development is_a: GO:0070170 ! regulation of tooth mineralization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0034505 ! tooth mineralization -relationship: positively_regulates GO:0034505 ! tooth mineralization +intersection_of: RO:0002213 GO:0034505 ! positively regulates tooth mineralization +relationship: RO:0002213 GO:0034505 ! positively regulates tooth mineralization [Term] id: GO:0070192 @@ -103180,8 +102638,8 @@ def: "The directed movement of a protein to a specific location on a chromosome. synonym: "establishment of protein localisation to chromosome" EXACT [GOC:mah] is_a: GO:0072594 ! establishment of protein localization to organelle intersection_of: GO:0045184 ! establishment of protein localization -intersection_of: has_target_end_location GO:0005694 ! chromosome -relationship: has_target_end_location GO:0005694 ! chromosome +intersection_of: RO:0002339 GO:0005694 ! has target end location chromosome +relationship: RO:0002339 GO:0005694 ! has target end location chromosome [Term] id: GO:0070201 @@ -103191,8 +102649,8 @@ def: "Any process that modulates the frequency, rate or extent of the directed m synonym: "regulation of establishment of protein localisation" EXACT [GOC:mah] is_a: GO:0032880 ! regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0045184 ! establishment of protein localization -relationship: regulates GO:0045184 ! establishment of protein localization +intersection_of: RO:0002211 GO:0045184 ! regulates (processual) establishment of protein localization +relationship: RO:0002211 GO:0045184 ! regulates (processual) establishment of protein localization [Term] id: GO:0070202 @@ -103202,8 +102660,8 @@ def: "Any process that modulates the frequency, rate or extent of the directed m synonym: "regulation of establishment of protein localisation to chromosome" EXACT [GOC:mah] is_a: GO:0070201 ! regulation of establishment of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070199 ! establishment of protein localization to chromosome -relationship: regulates GO:0070199 ! establishment of protein localization to chromosome +intersection_of: RO:0002211 GO:0070199 ! regulates (processual) establishment of protein localization to chromosome +relationship: RO:0002211 GO:0070199 ! regulates (processual) establishment of protein localization to chromosome [Term] id: GO:0070227 @@ -103214,8 +102672,8 @@ comment: Note that a lymphocyte is a cell of the B cell, T cell, or natural kill synonym: "lymphocyte apoptosis" NARROW [] is_a: GO:0071887 ! leukocyte apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000542 ! lymphocyte -relationship: occurs_in CL:0000542 ! lymphocyte +intersection_of: BFO:0000066 CL:0000542 ! occurs in lymphocyte +relationship: BFO:0000066 CL:0000542 ! occurs in lymphocyte [Term] id: GO:0070228 @@ -103226,8 +102684,8 @@ comment: Note that a lymphocyte is a cell of the B cell, T cell, or natural kill synonym: "regulation of lymphocyte apoptosis" NARROW [] is_a: GO:2000106 ! regulation of leukocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070227 ! lymphocyte apoptotic process -relationship: regulates GO:0070227 ! lymphocyte apoptotic process +intersection_of: RO:0002211 GO:0070227 ! regulates (processual) lymphocyte apoptotic process +relationship: RO:0002211 GO:0070227 ! regulates (processual) lymphocyte apoptotic process [Term] id: GO:0070229 @@ -103243,8 +102701,8 @@ synonym: "negative regulation of lymphocyte apoptosis" NARROW [] is_a: GO:0070228 ! regulation of lymphocyte apoptotic process is_a: GO:2000107 ! negative regulation of leukocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070227 ! lymphocyte apoptotic process -relationship: negatively_regulates GO:0070227 ! lymphocyte apoptotic process +intersection_of: RO:0002212 GO:0070227 ! negatively regulates lymphocyte apoptotic process +relationship: RO:0002212 GO:0070227 ! negatively regulates lymphocyte apoptotic process [Term] id: GO:0070230 @@ -103261,8 +102719,8 @@ synonym: "upregulation of lymphocyte apoptosis" EXACT [GOC:add] is_a: GO:0070228 ! regulation of lymphocyte apoptotic process is_a: GO:2000108 ! positive regulation of leukocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070227 ! lymphocyte apoptotic process -relationship: positively_regulates GO:0070227 ! lymphocyte apoptotic process +intersection_of: RO:0002213 GO:0070227 ! positively regulates lymphocyte apoptotic process +relationship: RO:0002213 GO:0070227 ! positively regulates lymphocyte apoptotic process [Term] id: GO:0070231 @@ -103276,8 +102734,8 @@ synonym: "T-cell apoptosis" EXACT [GOC:add] synonym: "T-lymphocyte apoptosis" EXACT [GOC:add] is_a: GO:0070227 ! lymphocyte apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000084 ! T cell -relationship: occurs_in CL:0000084 ! T cell +intersection_of: BFO:0000066 CL:0000084 ! occurs in T cell +relationship: BFO:0000066 CL:0000084 ! occurs in T cell [Term] id: GO:0070232 @@ -103291,8 +102749,8 @@ synonym: "regulation of T-cell apoptosis" EXACT [GOC:add] synonym: "regulation of T-lymphocyte apoptosis" EXACT [GOC:add] is_a: GO:0070228 ! regulation of lymphocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070231 ! T cell apoptotic process -relationship: regulates GO:0070231 ! T cell apoptotic process +intersection_of: RO:0002211 GO:0070231 ! regulates (processual) T cell apoptotic process +relationship: RO:0002211 GO:0070231 ! regulates (processual) T cell apoptotic process [Term] id: GO:0070233 @@ -103311,8 +102769,8 @@ synonym: "negative regulation of T-lymphocyte apoptosis" EXACT [GOC:add] is_a: GO:0070229 ! negative regulation of lymphocyte apoptotic process is_a: GO:0070232 ! regulation of T cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070231 ! T cell apoptotic process -relationship: negatively_regulates GO:0070231 ! T cell apoptotic process +intersection_of: RO:0002212 GO:0070231 ! negatively regulates T cell apoptotic process +relationship: RO:0002212 GO:0070231 ! negatively regulates T cell apoptotic process [Term] id: GO:0070234 @@ -103332,8 +102790,8 @@ synonym: "upregulation of T cell apoptosis" EXACT [GOC:add] is_a: GO:0070230 ! positive regulation of lymphocyte apoptotic process is_a: GO:0070232 ! regulation of T cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070231 ! T cell apoptotic process -relationship: positively_regulates GO:0070231 ! T cell apoptotic process +intersection_of: RO:0002213 GO:0070231 ! positively regulates T cell apoptotic process +relationship: RO:0002213 GO:0070231 ! positively regulates T cell apoptotic process [Term] id: GO:0070242 @@ -103345,8 +102803,8 @@ synonym: "immature T cell apoptosis" RELATED [GOC:add] synonym: "thymocyte apoptosis" NARROW [] is_a: GO:0070231 ! T cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000893 ! thymocyte -relationship: occurs_in CL:0000893 ! thymocyte +intersection_of: BFO:0000066 CL:0000893 ! occurs in thymocyte +relationship: BFO:0000066 CL:0000893 ! occurs in thymocyte [Term] id: GO:0070243 @@ -103358,8 +102816,8 @@ synonym: "regulation of immature T cell apoptosis" RELATED [GOC:add] synonym: "regulation of thymocyte apoptosis" NARROW [] is_a: GO:0070232 ! regulation of T cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070242 ! thymocyte apoptotic process -relationship: regulates GO:0070242 ! thymocyte apoptotic process +intersection_of: RO:0002211 GO:0070242 ! regulates (processual) thymocyte apoptotic process +relationship: RO:0002211 GO:0070242 ! regulates (processual) thymocyte apoptotic process [Term] id: GO:0070244 @@ -103376,8 +102834,8 @@ synonym: "negative regulation of thymocyte apoptosis" NARROW [] is_a: GO:0070233 ! negative regulation of T cell apoptotic process is_a: GO:0070243 ! regulation of thymocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070242 ! thymocyte apoptotic process -relationship: negatively_regulates GO:0070242 ! thymocyte apoptotic process +intersection_of: RO:0002212 GO:0070242 ! negatively regulates thymocyte apoptotic process +relationship: RO:0002212 GO:0070242 ! negatively regulates thymocyte apoptotic process [Term] id: GO:0070245 @@ -103395,8 +102853,8 @@ synonym: "upregulation of thymocyte apoptosis" EXACT [GOC:add] is_a: GO:0070234 ! positive regulation of T cell apoptotic process is_a: GO:0070243 ! regulation of thymocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070242 ! thymocyte apoptotic process -relationship: positively_regulates GO:0070242 ! thymocyte apoptotic process +intersection_of: RO:0002213 GO:0070242 ! positively regulates thymocyte apoptotic process +relationship: RO:0002213 GO:0070242 ! positively regulates thymocyte apoptotic process [Term] id: GO:0070246 @@ -103407,8 +102865,8 @@ synonym: "natural killer cell apoptosis" NARROW [] synonym: "NK cell apoptosis" EXACT [GOC:add] is_a: GO:0070227 ! lymphocyte apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000623 ! natural killer cell -relationship: occurs_in CL:0000623 ! natural killer cell +intersection_of: BFO:0000066 CL:0000623 ! occurs in natural killer cell +relationship: BFO:0000066 CL:0000623 ! occurs in natural killer cell [Term] id: GO:0070247 @@ -103419,8 +102877,8 @@ synonym: "regulation of natural killer cell apoptosis" NARROW [] synonym: "regulation of NK cell apoptosis" EXACT [GOC:add] is_a: GO:0070228 ! regulation of lymphocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070246 ! natural killer cell apoptotic process -relationship: regulates GO:0070246 ! natural killer cell apoptotic process +intersection_of: RO:0002211 GO:0070246 ! regulates (processual) natural killer cell apoptotic process +relationship: RO:0002211 GO:0070246 ! regulates (processual) natural killer cell apoptotic process [Term] id: GO:0070248 @@ -103436,8 +102894,8 @@ synonym: "negative regulation of NK cell apoptosis" EXACT [GOC:add] is_a: GO:0070229 ! negative regulation of lymphocyte apoptotic process is_a: GO:0070247 ! regulation of natural killer cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070246 ! natural killer cell apoptotic process -relationship: negatively_regulates GO:0070246 ! natural killer cell apoptotic process +intersection_of: RO:0002212 GO:0070246 ! negatively regulates natural killer cell apoptotic process +relationship: RO:0002212 GO:0070246 ! negatively regulates natural killer cell apoptotic process [Term] id: GO:0070249 @@ -103454,8 +102912,8 @@ synonym: "upregulation of natural killer cell apoptosis" EXACT [GOC:add] is_a: GO:0070230 ! positive regulation of lymphocyte apoptotic process is_a: GO:0070247 ! regulation of natural killer cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070246 ! natural killer cell apoptotic process -relationship: positively_regulates GO:0070246 ! natural killer cell apoptotic process +intersection_of: RO:0002213 GO:0070246 ! positively regulates natural killer cell apoptotic process +relationship: RO:0002213 GO:0070246 ! positively regulates natural killer cell apoptotic process [Term] id: GO:0070253 @@ -103464,8 +102922,8 @@ namespace: biological_process def: "The regulated release of somatostatin from secretory granules in the D cells of the pancreas." [GOC:mah] is_a: GO:0030072 ! peptide hormone secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:64628 ! somatostatin -relationship: has_primary_input CHEBI:64628 ! somatostatin +intersection_of: RO:0004009 CHEBI:64628 ! has primary input somatostatin +relationship: RO:0004009 CHEBI:64628 ! has primary input somatostatin [Term] id: GO:0070254 @@ -103476,8 +102934,8 @@ synonym: "mucus production" EXACT [GOC:add] is_a: GO:0007589 ! body fluid secretion is_a: GO:0032941 ! secretion by tissue intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input UBERON:0000912 ! mucus -relationship: has_primary_input UBERON:0000912 ! mucus +intersection_of: RO:0004009 UBERON:0000912 ! has primary input mucus +relationship: RO:0004009 UBERON:0000912 ! has primary input mucus [Term] id: GO:0070255 @@ -103489,8 +102947,8 @@ is_a: GO:0050878 ! regulation of body fluid levels is_a: GO:0051046 ! regulation of secretion is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070254 ! mucus secretion -relationship: regulates GO:0070254 ! mucus secretion +intersection_of: RO:0002211 GO:0070254 ! regulates (processual) mucus secretion +relationship: RO:0002211 GO:0070254 ! regulates (processual) mucus secretion [Term] id: GO:0070256 @@ -103502,8 +102960,8 @@ is_a: GO:0051048 ! negative regulation of secretion is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:0070255 ! regulation of mucus secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070254 ! mucus secretion -relationship: negatively_regulates GO:0070254 ! mucus secretion +intersection_of: RO:0002212 GO:0070254 ! negatively regulates mucus secretion +relationship: RO:0002212 GO:0070254 ! negatively regulates mucus secretion [Term] id: GO:0070257 @@ -103515,8 +102973,8 @@ is_a: GO:0051047 ! positive regulation of secretion is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:0070255 ! regulation of mucus secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070254 ! mucus secretion -relationship: positively_regulates GO:0070254 ! mucus secretion +intersection_of: RO:0002213 GO:0070254 ! positively regulates mucus secretion +relationship: RO:0002213 GO:0070254 ! positively regulates mucus secretion [Term] id: GO:0070278 @@ -103535,9 +102993,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a pigment cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a pigment cell fate." [GOC:cvs] is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000147 ! pigment cell +intersection_of: RO:0002296 CL:0000147 ! results in development of pigment cell relationship: part_of GO:0050931 ! pigment cell differentiation -relationship: results_in_development_of CL:0000147 ! pigment cell +relationship: RO:0002296 CL:0000147 ! results in development of pigment cell [Term] id: GO:0070293 @@ -103566,9 +103024,9 @@ def: "The process in which a relatively unspecialized cell acquires specialized synonym: "lens fibre cell differentiation" EXACT [GOC:mah] is_a: GO:0030855 ! epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0011004 ! lens fiber cell +intersection_of: RO:0002315 CL:0011004 ! results in acquisition of features of lens fiber cell relationship: part_of GO:0002088 ! lens development in camera-type eye -relationship: results_in_acquisition_of_features_of CL:0011004 ! lens fiber cell +relationship: RO:0002315 CL:0011004 ! results in acquisition of features of lens fiber cell [Term] id: GO:0070307 @@ -103578,9 +103036,9 @@ def: "The process whose specific outcome is the progression of a lens fiber cell synonym: "lens fibre cell development" EXACT [GOC:mah] is_a: GO:0002064 ! epithelial cell development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:0011004 ! lens fiber cell +intersection_of: RO:0002296 CL:0011004 ! results in development of lens fiber cell relationship: part_of GO:0070306 ! lens fiber cell differentiation -relationship: results_in_development_of CL:0011004 ! lens fiber cell +relationship: RO:0002296 CL:0011004 ! results in development of lens fiber cell [Term] id: GO:0070341 @@ -103591,8 +103049,8 @@ synonym: "adipocyte proliferation" EXACT [GOC:sl] synonym: "adipose cell proliferation" EXACT [GOC:sl] is_a: GO:0008283 ! cell population proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000136 ! adipocyte -relationship: acts_on_population_of CL:0000136 ! adipocyte +intersection_of: RO:0012003 CL:0000136 ! acts on population of adipocyte +relationship: RO:0012003 CL:0000136 ! acts on population of adipocyte [Term] id: GO:0070342 @@ -103603,9 +103061,9 @@ synonym: "brown adipocyte proliferation" EXACT [GOC:sl] synonym: "brown adipose cell proliferation" EXACT [GOC:sl] is_a: GO:0070341 ! fat cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000449 ! brown adipocyte -relationship: acts_on_population_of CL:0000449 ! brown adipocyte +intersection_of: RO:0012003 CL:0000449 ! acts on population of brown adipocyte relationship: never_in_taxon NCBITaxon:8782 ! Aves +relationship: RO:0012003 CL:0000449 ! acts on population of brown adipocyte [Term] id: GO:0070343 @@ -103616,8 +103074,8 @@ synonym: "white adipocyte proliferation" EXACT [GOC:sl] synonym: "white adipose cell proliferation" EXACT [GOC:sl] is_a: GO:0070341 ! fat cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000448 ! white adipocyte -relationship: acts_on_population_of CL:0000448 ! white adipocyte +intersection_of: RO:0012003 CL:0000448 ! acts on population of white adipocyte +relationship: RO:0012003 CL:0000448 ! acts on population of white adipocyte [Term] id: GO:0070344 @@ -103628,8 +103086,8 @@ synonym: "regulation of adipocyte proliferation" EXACT [GOC:sl] synonym: "regulation of adipose cell proliferation" EXACT [GOC:sl] is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070341 ! fat cell proliferation -relationship: regulates GO:0070341 ! fat cell proliferation +intersection_of: RO:0002211 GO:0070341 ! regulates (processual) fat cell proliferation +relationship: RO:0002211 GO:0070341 ! regulates (processual) fat cell proliferation [Term] id: GO:0070345 @@ -103645,8 +103103,8 @@ synonym: "negative regulation of adipose cell proliferation" EXACT [GOC:sl] is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:0070344 ! regulation of fat cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070341 ! fat cell proliferation -relationship: negatively_regulates GO:0070341 ! fat cell proliferation +intersection_of: RO:0002212 GO:0070341 ! negatively regulates fat cell proliferation +relationship: RO:0002212 GO:0070341 ! negatively regulates fat cell proliferation [Term] id: GO:0070346 @@ -103663,8 +103121,8 @@ synonym: "upregulation of fat cell proliferation" EXACT [GOC:mah] is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:0070344 ! regulation of fat cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070341 ! fat cell proliferation -relationship: positively_regulates GO:0070341 ! fat cell proliferation +intersection_of: RO:0002213 GO:0070341 ! positively regulates fat cell proliferation +relationship: RO:0002213 GO:0070341 ! positively regulates fat cell proliferation [Term] id: GO:0070347 @@ -103675,8 +103133,8 @@ synonym: "regulation of brown adipocyte proliferation" EXACT [GOC:sl] synonym: "regulation of brown adipose cell proliferation" EXACT [GOC:sl] is_a: GO:0070344 ! regulation of fat cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070342 ! brown fat cell proliferation -relationship: regulates GO:0070342 ! brown fat cell proliferation +intersection_of: RO:0002211 GO:0070342 ! regulates (processual) brown fat cell proliferation +relationship: RO:0002211 GO:0070342 ! regulates (processual) brown fat cell proliferation [Term] id: GO:0070348 @@ -103692,8 +103150,8 @@ synonym: "negative regulation of brown adipose cell proliferation" EXACT [GOC:sl is_a: GO:0070345 ! negative regulation of fat cell proliferation is_a: GO:0070347 ! regulation of brown fat cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070342 ! brown fat cell proliferation -relationship: negatively_regulates GO:0070342 ! brown fat cell proliferation +intersection_of: RO:0002212 GO:0070342 ! negatively regulates brown fat cell proliferation +relationship: RO:0002212 GO:0070342 ! negatively regulates brown fat cell proliferation [Term] id: GO:0070349 @@ -103710,8 +103168,8 @@ synonym: "upregulation of brown fat cell proliferation" EXACT [GOC:mah] is_a: GO:0070346 ! positive regulation of fat cell proliferation is_a: GO:0070347 ! regulation of brown fat cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070342 ! brown fat cell proliferation -relationship: positively_regulates GO:0070342 ! brown fat cell proliferation +intersection_of: RO:0002213 GO:0070342 ! positively regulates brown fat cell proliferation +relationship: RO:0002213 GO:0070342 ! positively regulates brown fat cell proliferation [Term] id: GO:0070350 @@ -103722,8 +103180,8 @@ synonym: "regulation of white adipocyte proliferation" EXACT [GOC:sl] synonym: "regulation of white adipose cell proliferation" EXACT [GOC:sl] is_a: GO:0070344 ! regulation of fat cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070343 ! white fat cell proliferation -relationship: regulates GO:0070343 ! white fat cell proliferation +intersection_of: RO:0002211 GO:0070343 ! regulates (processual) white fat cell proliferation +relationship: RO:0002211 GO:0070343 ! regulates (processual) white fat cell proliferation [Term] id: GO:0070351 @@ -103739,8 +103197,8 @@ synonym: "negative regulation of white adipose cell proliferation" EXACT [GOC:sl is_a: GO:0070345 ! negative regulation of fat cell proliferation is_a: GO:0070350 ! regulation of white fat cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070343 ! white fat cell proliferation -relationship: negatively_regulates GO:0070343 ! white fat cell proliferation +intersection_of: RO:0002212 GO:0070343 ! negatively regulates white fat cell proliferation +relationship: RO:0002212 GO:0070343 ! negatively regulates white fat cell proliferation [Term] id: GO:0070352 @@ -103757,8 +103215,8 @@ synonym: "upregulation of white fat cell proliferation" EXACT [GOC:mah] is_a: GO:0070346 ! positive regulation of fat cell proliferation is_a: GO:0070350 ! regulation of white fat cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070343 ! white fat cell proliferation -relationship: positively_regulates GO:0070343 ! white fat cell proliferation +intersection_of: RO:0002213 GO:0070343 ! positively regulates white fat cell proliferation +relationship: RO:0002213 GO:0070343 ! positively regulates white fat cell proliferation [Term] id: GO:0070365 @@ -103768,9 +103226,9 @@ def: "The process in which a relatively unspecialized cell acquires the speciali synonym: "liver cell differentiation" EXACT [GOC:mah] is_a: GO:0030855 ! epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000182 ! hepatocyte +intersection_of: RO:0002315 CL:0000182 ! results in acquisition of features of hepatocyte relationship: part_of GO:0001889 ! liver development -relationship: results_in_acquisition_of_features_of CL:0000182 ! hepatocyte +relationship: RO:0002315 CL:0000182 ! results in acquisition of features of hepatocyte [Term] id: GO:0070366 @@ -103780,8 +103238,8 @@ def: "Any process that modulates the frequency, rate or extent of hepatocyte dif synonym: "regulation of liver cell differentiation" EXACT [GOC:sl] is_a: GO:0030856 ! regulation of epithelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070365 ! hepatocyte differentiation -relationship: regulates GO:0070365 ! hepatocyte differentiation +intersection_of: RO:0002211 GO:0070365 ! regulates (processual) hepatocyte differentiation +relationship: RO:0002211 GO:0070365 ! regulates (processual) hepatocyte differentiation [Term] id: GO:0070367 @@ -103797,8 +103255,8 @@ is_a: GO:0030857 ! negative regulation of epithelial cell differentiation is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:0070366 ! regulation of hepatocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070365 ! hepatocyte differentiation -relationship: negatively_regulates GO:0070365 ! hepatocyte differentiation +intersection_of: RO:0002212 GO:0070365 ! negatively regulates hepatocyte differentiation +relationship: RO:0002212 GO:0070365 ! negatively regulates hepatocyte differentiation [Term] id: GO:0070368 @@ -103815,8 +103273,8 @@ is_a: GO:0030858 ! positive regulation of epithelial cell differentiation is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:0070366 ! regulation of hepatocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070365 ! hepatocyte differentiation -relationship: positively_regulates GO:0070365 ! hepatocyte differentiation +intersection_of: RO:0002213 GO:0070365 ! positively regulates hepatocyte differentiation +relationship: RO:0002213 GO:0070365 ! positively regulates hepatocyte differentiation [Term] id: GO:0070382 @@ -103839,8 +103297,8 @@ def: "The process whose specific outcome is the progression of the Harderian gla comment: Note that the Harderian gland is found in all terrestrial vertebrate groups, including amphibia, reptiles, birds, and mammals. However, it appears to be absent in certain mammals such as bats, cows, horses, and higher primates. Though largely absent in the adult human, it is present in the fetal and neonatal stages. is_a: GO:0048732 ! gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004187 ! Harderian gland -relationship: results_in_development_of UBERON:0004187 ! Harderian gland +intersection_of: RO:0002296 UBERON:0004187 ! results in development of Harderian gland +relationship: RO:0002296 UBERON:0004187 ! results in development of Harderian gland [Term] id: GO:0070405 @@ -103850,8 +103308,8 @@ def: "Binding to ammonium ions (NH4+)." [CHEBI:28938, GOC:ecd] synonym: "ammonium binding" RELATED [] is_a: GO:0043169 ! cation binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:28938 ! ammonium -relationship: has_primary_input CHEBI:28938 ! ammonium +intersection_of: RO:0004009 CHEBI:28938 ! has primary input ammonium +relationship: RO:0004009 CHEBI:28938 ! has primary input ammonium [Term] id: GO:0070444 @@ -103861,9 +103319,9 @@ def: "The multiplication or reproduction of oligodendrocyte progenitor cells by synonym: "oligodendrocyte precursor proliferation" EXACT [GOC:mah] is_a: GO:0061351 ! neural precursor cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0002453 ! oligodendrocyte precursor cell -relationship: acts_on_population_of CL:0002453 ! oligodendrocyte precursor cell +intersection_of: RO:0012003 CL:0002453 ! acts on population of oligodendrocyte precursor cell relationship: part_of GO:0042063 ! gliogenesis +relationship: RO:0012003 CL:0002453 ! acts on population of oligodendrocyte precursor cell [Term] id: GO:0070445 @@ -103873,8 +103331,8 @@ def: "Any process that modulates the frequency, rate or extent of oligodendrocyt synonym: "regulation of oligodendrocyte precursor proliferation" EXACT [GOC:mah] is_a: GO:2000177 ! regulation of neural precursor cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070444 ! oligodendrocyte progenitor proliferation -relationship: regulates GO:0070444 ! oligodendrocyte progenitor proliferation +intersection_of: RO:0002211 GO:0070444 ! regulates (processual) oligodendrocyte progenitor proliferation +relationship: RO:0002211 GO:0070444 ! regulates (processual) oligodendrocyte progenitor proliferation [Term] id: GO:0070446 @@ -103886,8 +103344,8 @@ is_a: GO:0014014 ! negative regulation of gliogenesis is_a: GO:0070445 ! regulation of oligodendrocyte progenitor proliferation is_a: GO:2000178 ! negative regulation of neural precursor cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070444 ! oligodendrocyte progenitor proliferation -relationship: negatively_regulates GO:0070444 ! oligodendrocyte progenitor proliferation +intersection_of: RO:0002212 GO:0070444 ! negatively regulates oligodendrocyte progenitor proliferation +relationship: RO:0002212 GO:0070444 ! negatively regulates oligodendrocyte progenitor proliferation [Term] id: GO:0070447 @@ -103899,8 +103357,8 @@ is_a: GO:0014015 ! positive regulation of gliogenesis is_a: GO:0070445 ! regulation of oligodendrocyte progenitor proliferation is_a: GO:2000179 ! positive regulation of neural precursor cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070444 ! oligodendrocyte progenitor proliferation -relationship: positively_regulates GO:0070444 ! oligodendrocyte progenitor proliferation +intersection_of: RO:0002213 GO:0070444 ! positively regulates oligodendrocyte progenitor proliferation +relationship: RO:0002213 GO:0070444 ! positively regulates oligodendrocyte progenitor proliferation [Term] id: GO:0070451 @@ -103920,8 +103378,8 @@ def: "The regulated release of prolactin, a peptide hormone that stimulates lact is_a: GO:0009306 ! protein secretion is_a: GO:0030072 ! peptide hormone secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input PR:000013246 ! prolactin -relationship: has_primary_input PR:000013246 ! prolactin +intersection_of: RO:0004009 PR:000013246 ! has primary input prolactin +relationship: RO:0004009 PR:000013246 ! has primary input prolactin [Term] id: GO:0070482 @@ -103949,8 +103407,8 @@ synonym: "regulation of microtubule dynamics" EXACT [GOC:dph, GOC:tb] is_a: GO:0032886 ! regulation of microtubule-based process is_a: GO:0051493 ! regulation of cytoskeleton organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0000226 ! microtubule cytoskeleton organization -relationship: regulates GO:0000226 ! microtubule cytoskeleton organization +intersection_of: RO:0002211 GO:0000226 ! regulates (processual) microtubule cytoskeleton organization +relationship: RO:0002211 GO:0000226 ! regulates (processual) microtubule cytoskeleton organization [Term] id: GO:0070509 @@ -103960,7 +103418,7 @@ def: "The directed movement of calcium ions into a cell or organelle." [GOC:mah] synonym: "calcium ion uptake" EXACT [GOC:mah] synonym: "transmembrane calcium influx" RELATED [GOC:tb] is_a: GO:0006816 ! calcium ion transport -relationship: has_primary_input CHEBI:29108 ! calcium(2+) +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23015" xsd:anyURI [Term] @@ -103971,8 +103429,8 @@ def: "Any process that results in a change in state or activity of a cell or an is_a: GO:0033993 ! response to lipid is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:28868 ! fatty acid anion -relationship: has_primary_input CHEBI:28868 ! fatty acid anion +intersection_of: RO:0004009 CHEBI:28868 ! has primary input fatty acid anion +relationship: RO:0004009 CHEBI:28868 ! has primary input fatty acid anion [Term] id: GO:0070560 @@ -103983,9 +103441,9 @@ is_a: GO:0009306 ! protein secretion is_a: GO:0051649 ! establishment of localization in cell is_a: GO:0140029 ! exocytic process intersection_of: GO:0009306 ! protein secretion -intersection_of: process_has_causal_agent CL:0000233 ! platelet +intersection_of: RO:0002608 CL:0000233 ! process has causal agent platelet relationship: part_of GO:0002576 ! platelet degranulation -relationship: process_has_causal_agent CL:0000233 ! platelet +relationship: RO:0002608 CL:0000233 ! process has causal agent platelet created_by: mah creation_date: 2009-04-09T02:38:05Z @@ -104001,8 +103459,8 @@ is_a: GO:0006816 ! calcium ion transport is_a: GO:0098655 ! monoatomic cation transmembrane transport is_a: GO:0098662 ! inorganic cation transmembrane transport intersection_of: GO:0055085 ! transmembrane transport -intersection_of: has_primary_input CHEBI:29108 ! calcium(2+) -relationship: has_primary_input CHEBI:29108 ! calcium(2+) +intersection_of: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) created_by: mah creation_date: 2009-04-28T10:44:09Z @@ -104016,8 +103474,8 @@ synonym: "regulation of protein maturation by peptide bond cleavage" EXACT [] is_a: GO:0030162 ! regulation of proteolysis is_a: GO:1903317 ! regulation of protein maturation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0016485 ! protein processing -relationship: regulates GO:0016485 ! protein processing +intersection_of: RO:0002211 GO:0016485 ! regulates (processual) protein processing +relationship: RO:0002211 GO:0016485 ! regulates (processual) protein processing created_by: mah creation_date: 2009-04-29T02:49:14Z @@ -104028,8 +103486,8 @@ namespace: biological_process def: "The directed movement of a substance from one side of an epithelium to the other." [GOC:mah, GOC:yaf, ISBN:0716731363] is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: results_in_transport_across UBERON:0000483 ! epithelium -relationship: results_in_transport_across UBERON:0000483 ! epithelium +intersection_of: RO:0002342 UBERON:0000483 ! results in transport across epithelium +relationship: RO:0002342 UBERON:0000483 ! results in transport across epithelium created_by: mah creation_date: 2009-05-06T03:31:02Z @@ -104041,8 +103499,8 @@ def: "The directed movement of ammonium ions from one side of an epithelium to t is_a: GO:0070633 ! transepithelial transport is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0070633 ! transepithelial transport -intersection_of: has_primary_input CHEBI:28938 ! ammonium -relationship: has_primary_input CHEBI:28938 ! ammonium +intersection_of: RO:0004009 CHEBI:28938 ! has primary input ammonium +relationship: RO:0004009 CHEBI:28938 ! has primary input ammonium created_by: mah creation_date: 2009-05-06T03:34:43Z @@ -104053,10 +103511,10 @@ namespace: biological_process def: "The expansion of a leukocyte population by cell division." [GOC:add] is_a: GO:0008283 ! cell population proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000738 ! leukocyte -relationship: acts_on_population_of CL:0000738 ! leukocyte +intersection_of: RO:0012003 CL:0000738 ! acts on population of leukocyte relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata +relationship: RO:0012003 CL:0000738 ! acts on population of leukocyte created_by: mah creation_date: 2009-05-28T05:25:28Z @@ -104067,8 +103525,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of leukocyte proliferation." [GOC:add, GOC:mah] is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070661 ! leukocyte proliferation -relationship: regulates GO:0070661 ! leukocyte proliferation +intersection_of: RO:0002211 GO:0070661 ! regulates (processual) leukocyte proliferation +relationship: RO:0002211 GO:0070661 ! regulates (processual) leukocyte proliferation created_by: mah creation_date: 2009-05-28T05:30:39Z @@ -104084,8 +103542,8 @@ synonym: "inhibition of leukocyte proliferation" NARROW [GOC:mah] is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:0070663 ! regulation of leukocyte proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070661 ! leukocyte proliferation -relationship: negatively_regulates GO:0070661 ! leukocyte proliferation +intersection_of: RO:0002212 GO:0070661 ! negatively regulates leukocyte proliferation +relationship: RO:0002212 GO:0070661 ! negatively regulates leukocyte proliferation created_by: mah creation_date: 2009-05-28T05:34:50Z @@ -104102,8 +103560,8 @@ synonym: "upregulation of leukocyte proliferation" EXACT [GOC:mah] is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:0070663 ! regulation of leukocyte proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070661 ! leukocyte proliferation -relationship: positively_regulates GO:0070661 ! leukocyte proliferation +intersection_of: RO:0002213 GO:0070661 ! positively regulates leukocyte proliferation +relationship: RO:0002213 GO:0070661 ! positively regulates leukocyte proliferation created_by: mah creation_date: 2009-05-28T05:36:46Z @@ -104126,9 +103584,9 @@ def: "The aggregation, arrangement and bonding together of a set of components t synonym: "tight junction formation" EXACT [GOC:mah] is_a: GO:0120192 ! tight junction assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0005923 ! bicellular tight junction +intersection_of: RO:0002588 GO:0005923 ! results in assembly of bicellular tight junction relationship: part_of GO:0043297 ! apical junction assembly -relationship: results_in_assembly_of GO:0005923 ! bicellular tight junction +relationship: RO:0002588 GO:0005923 ! results in assembly of bicellular tight junction created_by: mah creation_date: 2009-07-23T04:32:38Z @@ -104141,8 +103599,8 @@ comment: Note that this term has no relationship to 'membrane assembly ; GO:0071 is_a: GO:0071711 ! basement membrane organization is_a: GO:0085029 ! extracellular matrix assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0005604 ! basement membrane -relationship: results_in_assembly_of GO:0005604 ! basement membrane +intersection_of: RO:0002588 GO:0005604 ! results in assembly of basement membrane +relationship: RO:0002588 GO:0005604 ! results in assembly of basement membrane created_by: mah creation_date: 2009-07-23T05:01:51Z @@ -104164,13 +103622,12 @@ synonym: "regulation of bile acid anabolism" EXACT [GOC:mah] synonym: "regulation of bile acid biosynthesis" EXACT [GOC:mah] synonym: "regulation of bile acid formation" EXACT [GOC:mah] synonym: "regulation of bile acid synthesis" EXACT [GOC:mah] -is_a: GO:0010565 ! regulation of cellular ketone metabolic process -is_a: GO:0031326 ! regulation of cellular biosynthetic process +is_a: GO:0010565 ! regulation of ketone metabolic process is_a: GO:0050810 ! regulation of steroid biosynthetic process is_a: GO:1904251 ! regulation of bile acid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006699 ! bile acid biosynthetic process -relationship: regulates GO:0006699 ! bile acid biosynthetic process +intersection_of: RO:0002211 GO:0006699 ! regulates (processual) bile acid biosynthetic process +relationship: RO:0002211 GO:0006699 ! regulates (processual) bile acid biosynthetic process created_by: mah creation_date: 2009-08-14T03:09:02Z @@ -104188,12 +103645,11 @@ synonym: "negative regulation of bile acid biosynthesis" EXACT [GOC:mah] synonym: "negative regulation of bile acid formation" EXACT [GOC:mah] synonym: "negative regulation of bile acid synthesis" EXACT [GOC:mah] is_a: GO:0010894 ! negative regulation of steroid biosynthetic process -is_a: GO:0031327 ! negative regulation of cellular biosynthetic process is_a: GO:0070857 ! regulation of bile acid biosynthetic process is_a: GO:1904252 ! negative regulation of bile acid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006699 ! bile acid biosynthetic process -relationship: negatively_regulates GO:0006699 ! bile acid biosynthetic process +intersection_of: RO:0002212 GO:0006699 ! negatively regulates bile acid biosynthetic process +relationship: RO:0002212 GO:0006699 ! negatively regulates bile acid biosynthetic process created_by: mah creation_date: 2009-08-14T03:16:40Z @@ -104212,12 +103668,11 @@ synonym: "up regulation of bile acid biosynthetic process" EXACT [GOC:mah] synonym: "up-regulation of bile acid biosynthetic process" EXACT [GOC:mah] synonym: "upregulation of bile acid biosynthetic process" EXACT [GOC:mah] is_a: GO:0010893 ! positive regulation of steroid biosynthetic process -is_a: GO:0031328 ! positive regulation of cellular biosynthetic process is_a: GO:0070857 ! regulation of bile acid biosynthetic process is_a: GO:1904253 ! positive regulation of bile acid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006699 ! bile acid biosynthetic process -relationship: positively_regulates GO:0006699 ! bile acid biosynthetic process +intersection_of: RO:0002213 GO:0006699 ! positively regulates bile acid biosynthetic process +relationship: RO:0002213 GO:0006699 ! positively regulates bile acid biosynthetic process created_by: mah creation_date: 2009-08-14T03:22:58Z @@ -104230,8 +103685,8 @@ synonym: "regulation of glycogen metabolism" EXACT [GOC:mah] is_a: GO:0032881 ! regulation of polysaccharide metabolic process is_a: GO:0043467 ! regulation of generation of precursor metabolites and energy intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0005977 ! glycogen metabolic process -relationship: regulates GO:0005977 ! glycogen metabolic process +intersection_of: RO:0002211 GO:0005977 ! regulates (processual) glycogen metabolic process +relationship: RO:0002211 GO:0005977 ! regulates (processual) glycogen metabolic process created_by: mah creation_date: 2009-08-20T02:44:53Z @@ -104242,12 +103697,11 @@ namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving glycogen." [GOC:mah] synonym: "negative regulation of glycogen metabolism" EXACT [GOC:mah] is_a: GO:0010605 ! negative regulation of macromolecule metabolic process -is_a: GO:0031324 ! negative regulation of cellular metabolic process is_a: GO:0045912 ! negative regulation of carbohydrate metabolic process is_a: GO:0070873 ! regulation of glycogen metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0005977 ! glycogen metabolic process -relationship: negatively_regulates GO:0005977 ! glycogen metabolic process +intersection_of: RO:0002212 GO:0005977 ! negatively regulates glycogen metabolic process +relationship: RO:0002212 GO:0005977 ! negatively regulates glycogen metabolic process created_by: mah creation_date: 2009-08-20T02:50:41Z @@ -104259,11 +103713,10 @@ def: "Any process that activates or increases the frequency, rate or extent of t synonym: "positive regulation of glycogen metabolism" EXACT [GOC:mah] is_a: GO:0010604 ! positive regulation of macromolecule metabolic process is_a: GO:0010907 ! positive regulation of glucose metabolic process -is_a: GO:0031325 ! positive regulation of cellular metabolic process is_a: GO:0070873 ! regulation of glycogen metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0005977 ! glycogen metabolic process -relationship: positively_regulates GO:0005977 ! glycogen metabolic process +intersection_of: RO:0002213 GO:0005977 ! positively regulates glycogen metabolic process +relationship: RO:0002213 GO:0005977 ! positively regulates glycogen metabolic process created_by: mah creation_date: 2009-08-20T02:53:55Z @@ -104288,8 +103741,8 @@ subset: goslim_yeast is_a: GO:0006996 ! organelle organization is_a: GO:0022607 ! cellular component assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0043226 ! organelle -relationship: results_in_assembly_of GO:0043226 ! organelle +intersection_of: RO:0002588 GO:0043226 ! results in assembly of organelle +relationship: RO:0002588 GO:0043226 ! results in assembly of organelle created_by: mah creation_date: 2009-09-15T03:00:51Z @@ -104302,8 +103755,8 @@ synonym: "neutrophil mediated cell killing" EXACT [GOC:add] is_a: GO:0001909 ! leukocyte mediated cytotoxicity is_a: GO:0002446 ! neutrophil mediated immunity intersection_of: GO:0001906 ! cell killing -intersection_of: process_has_causal_agent CL:0000775 ! neutrophil -relationship: process_has_causal_agent CL:0000775 ! neutrophil +intersection_of: RO:0002608 CL:0000775 ! process has causal agent neutrophil +relationship: RO:0002608 CL:0000775 ! process has causal agent neutrophil created_by: mah creation_date: 2009-10-01T01:49:30Z @@ -104316,8 +103769,8 @@ synonym: "regulation of neutrophil mediated cell killing" EXACT [GOC:add] is_a: GO:0001910 ! regulation of leukocyte mediated cytotoxicity is_a: GO:0002886 ! regulation of myeloid leukocyte mediated immunity intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070942 ! neutrophil mediated cytotoxicity -relationship: regulates GO:0070942 ! neutrophil mediated cytotoxicity +intersection_of: RO:0002211 GO:0070942 ! regulates (processual) neutrophil mediated cytotoxicity +relationship: RO:0002211 GO:0070942 ! regulates (processual) neutrophil mediated cytotoxicity created_by: mah creation_date: 2009-10-01T02:14:36Z @@ -104335,8 +103788,8 @@ is_a: GO:0001911 ! negative regulation of leukocyte mediated cytotoxicity is_a: GO:0002887 ! negative regulation of myeloid leukocyte mediated immunity is_a: GO:0070948 ! regulation of neutrophil mediated cytotoxicity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070942 ! neutrophil mediated cytotoxicity -relationship: negatively_regulates GO:0070942 ! neutrophil mediated cytotoxicity +intersection_of: RO:0002212 GO:0070942 ! negatively regulates neutrophil mediated cytotoxicity +relationship: RO:0002212 GO:0070942 ! negatively regulates neutrophil mediated cytotoxicity created_by: mah creation_date: 2009-10-01T02:20:17Z @@ -104355,8 +103808,8 @@ is_a: GO:0001912 ! positive regulation of leukocyte mediated cytotoxicity is_a: GO:0002888 ! positive regulation of myeloid leukocyte mediated immunity is_a: GO:0070948 ! regulation of neutrophil mediated cytotoxicity intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070942 ! neutrophil mediated cytotoxicity -relationship: positively_regulates GO:0070942 ! neutrophil mediated cytotoxicity +intersection_of: RO:0002213 GO:0070942 ! positively regulates neutrophil mediated cytotoxicity +relationship: RO:0002213 GO:0070942 ! positively regulates neutrophil mediated cytotoxicity created_by: mah creation_date: 2009-10-01T02:28:49Z @@ -104367,9 +103820,9 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for bone to attain its fully functional state." [GOC:dph, GOC:mah] is_a: GO:0048799 ! animal organ maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0001474 ! bone element +intersection_of: RO:0002299 UBERON:0001474 ! results in maturation of bone element relationship: part_of GO:0060348 ! bone development -relationship: results_in_maturation_of UBERON:0001474 ! bone element +relationship: RO:0002299 UBERON:0001474 ! results in maturation of bone element created_by: mah creation_date: 2009-10-05T04:35:31Z @@ -104385,8 +103838,8 @@ synonym: "regulation of phospholipid synthesis" EXACT [GOC:mah] is_a: GO:0046890 ! regulation of lipid biosynthetic process is_a: GO:1903725 ! regulation of phospholipid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008654 ! phospholipid biosynthetic process -relationship: regulates GO:0008654 ! phospholipid biosynthetic process +intersection_of: RO:0002211 GO:0008654 ! regulates (processual) phospholipid biosynthetic process +relationship: RO:0002211 GO:0008654 ! regulates (processual) phospholipid biosynthetic process created_by: mah creation_date: 2009-11-04T03:05:11Z @@ -104407,8 +103860,8 @@ is_a: GO:0051055 ! negative regulation of lipid biosynthetic process is_a: GO:0071071 ! regulation of phospholipid biosynthetic process is_a: GO:1903726 ! negative regulation of phospholipid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008654 ! phospholipid biosynthetic process -relationship: negatively_regulates GO:0008654 ! phospholipid biosynthetic process +intersection_of: RO:0002212 GO:0008654 ! negatively regulates phospholipid biosynthetic process +relationship: RO:0002212 GO:0008654 ! negatively regulates phospholipid biosynthetic process created_by: mah creation_date: 2009-11-04T03:14:08Z @@ -104430,8 +103883,8 @@ is_a: GO:0046889 ! positive regulation of lipid biosynthetic process is_a: GO:0071071 ! regulation of phospholipid biosynthetic process is_a: GO:1903727 ! positive regulation of phospholipid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008654 ! phospholipid biosynthetic process -relationship: positively_regulates GO:0008654 ! phospholipid biosynthetic process +intersection_of: RO:0002213 GO:0008654 ! positively regulates phospholipid biosynthetic process +relationship: RO:0002213 GO:0008654 ! positively regulates phospholipid biosynthetic process created_by: mah creation_date: 2009-11-04T03:18:51Z @@ -104442,9 +103895,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the superior temporal gyrus over time, from its formation to the mature structure. The superior temporal gyrus is a portion of the cerebral cortex that extends from the lateral sulcus to the superior temporal sulcus." [FMA:61905, GOC:BHF, GOC:mah, PMID:11484000] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002769 ! superior temporal gyrus +intersection_of: RO:0002296 UBERON:0002769 ! results in development of superior temporal gyrus relationship: part_of GO:0021987 ! cerebral cortex development -relationship: results_in_development_of UBERON:0002769 ! superior temporal gyrus +relationship: RO:0002296 UBERON:0002769 ! results in development of superior temporal gyrus created_by: mah creation_date: 2009-11-12T02:19:23Z @@ -104456,8 +103909,8 @@ def: "Any process in which a protein is transported to, or maintained at, a part synonym: "protein localisation to chromatin" EXACT [GOC:mah] is_a: GO:0034502 ! protein localization to chromosome intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0000785 ! chromatin -relationship: has_target_end_location GO:0000785 ! chromatin +intersection_of: RO:0002339 GO:0000785 ! has target end location chromatin +relationship: RO:0002339 GO:0000785 ! has target end location chromatin created_by: mah creation_date: 2009-11-20T11:51:20Z @@ -104469,8 +103922,8 @@ def: "The directed movement of a protein to a part of a chromosome that is organ synonym: "establishment of protein localisation to chromatin" EXACT [GOC:mah] is_a: GO:0070199 ! establishment of protein localization to chromosome intersection_of: GO:0045184 ! establishment of protein localization -intersection_of: has_target_end_location GO:0000785 ! chromatin -relationship: has_target_end_location GO:0000785 ! chromatin +intersection_of: RO:0002339 GO:0000785 ! has target end location chromatin +relationship: RO:0002339 GO:0000785 ! has target end location chromatin created_by: mah creation_date: 2009-11-20T11:52:43Z @@ -104496,8 +103949,8 @@ synonym: "cellular response to amino acid" EXACT [GOC:mah] is_a: GO:0043200 ! response to amino acid is_a: GO:0070887 ! cellular response to chemical stimulus intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion -relationship: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion +relationship: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion created_by: mah creation_date: 2009-12-03T02:08:11Z @@ -104507,12 +103960,12 @@ name: cellular response to phenylalanine namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phenylalanine stimulus." [GOC:mah] is_a: GO:0071407 ! cellular response to organic cyclic compound -is_a: GO:0071417 ! cellular response to organonitrogen compound is_a: GO:0080053 ! response to phenylalanine +is_a: GO:1901699 ! cellular response to nitrogen compound is_a: GO:1901701 ! cellular response to oxygen-containing compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:28044 ! phenylalanine -relationship: has_primary_input CHEBI:28044 ! phenylalanine +intersection_of: RO:0004009 CHEBI:28044 ! has primary input phenylalanine +relationship: RO:0004009 CHEBI:28044 ! has primary input phenylalanine created_by: mah creation_date: 2009-12-03T02:09:36Z @@ -104526,8 +103979,8 @@ synonym: "cellular response to ammonia" EXACT [] is_a: GO:0060359 ! response to ammonium ion is_a: GO:1901699 ! cellular response to nitrogen compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:28938 ! ammonium -relationship: has_primary_input CHEBI:28938 ! ammonium +intersection_of: RO:0004009 CHEBI:28938 ! has primary input ammonium +relationship: RO:0004009 CHEBI:28938 ! has primary input ammonium created_by: mah creation_date: 2009-12-03T02:39:40Z @@ -104539,8 +103992,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:0010037 ! response to carbon dioxide is_a: GO:1901701 ! cellular response to oxygen-containing compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:16526 ! carbon dioxide -relationship: has_primary_input CHEBI:16526 ! carbon dioxide +intersection_of: RO:0004009 CHEBI:16526 ! has primary input carbon dioxide +relationship: RO:0004009 CHEBI:16526 ! has primary input carbon dioxide created_by: mah creation_date: 2009-12-03T02:41:21Z @@ -104554,8 +104007,8 @@ synonym: "cellular response to metal" EXACT [GOC:mah] is_a: GO:0010038 ! response to metal ion is_a: GO:0070887 ! cellular response to chemical stimulus intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:25213 ! metal cation -relationship: has_primary_input CHEBI:25213 ! metal cation +intersection_of: RO:0004009 CHEBI:25213 ! has primary input metal cation +relationship: RO:0004009 CHEBI:25213 ! has primary input metal cation created_by: mah creation_date: 2009-12-03T02:46:31Z @@ -104568,8 +104021,8 @@ synonym: "cellular response to Ca2+ ion" EXACT [GOC:mah] is_a: GO:0051592 ! response to calcium ion is_a: GO:0071248 ! cellular response to metal ion intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:29108 ! calcium(2+) -relationship: has_primary_input CHEBI:29108 ! calcium(2+) +intersection_of: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) created_by: mah creation_date: 2009-12-10T03:55:01Z @@ -104582,8 +104035,8 @@ synonym: "cellular response to iron" EXACT [GOC:mah] is_a: GO:0010039 ! response to iron ion is_a: GO:0071248 ! cellular response to metal ion intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:24875 ! iron cation -relationship: has_primary_input CHEBI:24875 ! iron cation +intersection_of: RO:0004009 CHEBI:24875 ! has primary input iron cation +relationship: RO:0004009 CHEBI:24875 ! has primary input iron cation created_by: mah creation_date: 2009-12-10T03:57:22Z @@ -104595,8 +104048,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:0010034 ! response to acetate is_a: GO:1901701 ! cellular response to oxygen-containing compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:30089 ! acetate -relationship: has_primary_input CHEBI:30089 ! acetate +intersection_of: RO:0004009 CHEBI:30089 ! has primary input acetate +relationship: RO:0004009 CHEBI:30089 ! has primary input acetate created_by: mah creation_date: 2009-12-10T04:48:16Z @@ -104606,10 +104059,10 @@ name: cellular response to alkaloid namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkaloid stimulus. Alkaloids are a large group of nitrogenous substances found in naturally in plants, many of which have extracts that are pharmacologically active." [GOC:mah] is_a: GO:0043279 ! response to alkaloid -is_a: GO:0071417 ! cellular response to organonitrogen compound +is_a: GO:1901699 ! cellular response to nitrogen compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:22315 ! alkaloid -relationship: has_primary_input CHEBI:22315 ! alkaloid +intersection_of: RO:0004009 CHEBI:22315 ! has primary input alkaloid +relationship: RO:0004009 CHEBI:22315 ! has primary input alkaloid created_by: mah creation_date: 2009-12-10T04:50:58Z @@ -104623,8 +104076,8 @@ synonym: "cellular response to adenosine triphosphate" EXACT [GOC:mah] is_a: GO:0033198 ! response to ATP is_a: GO:0070887 ! cellular response to chemical stimulus intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:30616 ! ATP(4-) -relationship: has_primary_input CHEBI:30616 ! ATP(4-) +intersection_of: RO:0004009 CHEBI:30616 ! has primary input ATP(4-) +relationship: RO:0004009 CHEBI:30616 ! has primary input ATP(4-) created_by: mah creation_date: 2009-12-10T05:09:47Z @@ -104636,8 +104089,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:0009743 ! response to carbohydrate is_a: GO:1901701 ! cellular response to oxygen-containing compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:16646 ! carbohydrate -relationship: has_primary_input CHEBI:16646 ! carbohydrate +intersection_of: RO:0004009 CHEBI:16646 ! has primary input carbohydrate +relationship: RO:0004009 CHEBI:16646 ! has primary input carbohydrate created_by: mah creation_date: 2009-12-10T05:13:33Z @@ -104647,11 +104100,11 @@ name: cellular response to chitin namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus." [GOC:mah] is_a: GO:0010200 ! response to chitin -is_a: GO:0071417 ! cellular response to organonitrogen compound +is_a: GO:1901699 ! cellular response to nitrogen compound is_a: GO:1901701 ! cellular response to oxygen-containing compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:17029 ! chitin -relationship: has_primary_input CHEBI:17029 ! chitin +intersection_of: RO:0004009 CHEBI:17029 ! has primary input chitin +relationship: RO:0004009 CHEBI:17029 ! has primary input chitin created_by: mah creation_date: 2009-12-10T05:25:54Z @@ -104663,8 +104116,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:0034284 ! response to monosaccharide is_a: GO:0071322 ! cellular response to carbohydrate stimulus intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:35381 ! monosaccharide -relationship: has_primary_input CHEBI:35381 ! monosaccharide +intersection_of: RO:0004009 CHEBI:35381 ! has primary input monosaccharide +relationship: RO:0004009 CHEBI:35381 ! has primary input monosaccharide created_by: mah creation_date: 2009-12-10T05:27:18Z @@ -104676,8 +104129,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:0009746 ! response to hexose is_a: GO:0071326 ! cellular response to monosaccharide stimulus intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:18133 ! hexose -relationship: has_primary_input CHEBI:18133 ! hexose +intersection_of: RO:0004009 CHEBI:18133 ! has primary input hexose +relationship: RO:0004009 CHEBI:18133 ! has primary input hexose created_by: mah creation_date: 2009-12-10T05:37:00Z @@ -104690,8 +104143,8 @@ is_a: GO:0001678 ! intracellular glucose homeostasis is_a: GO:0009749 ! response to glucose is_a: GO:0071331 ! cellular response to hexose stimulus intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:4167 ! D-glucopyranose -relationship: has_primary_input CHEBI:4167 ! D-glucopyranose +intersection_of: RO:0004009 CHEBI:4167 ! has primary input D-glucopyranose +relationship: RO:0004009 CHEBI:4167 ! has primary input D-glucopyranose created_by: mah creation_date: 2009-12-10T05:38:03Z @@ -104711,11 +104164,11 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals." [GOC:mah] synonym: "cellular response to polypeptide hormone stimulus" EXACT [GOC:mah] is_a: GO:0043434 ! response to peptide hormone -is_a: GO:0071417 ! cellular response to organonitrogen compound +is_a: GO:1901699 ! cellular response to nitrogen compound is_a: GO:1901701 ! cellular response to oxygen-containing compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:25905 ! peptide hormone -relationship: has_primary_input CHEBI:25905 ! peptide hormone +intersection_of: RO:0004009 CHEBI:25905 ! has primary input peptide hormone +relationship: RO:0004009 CHEBI:25905 ! has primary input peptide hormone created_by: mah creation_date: 2009-12-11T03:24:18Z @@ -104727,8 +104180,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:0033762 ! response to glucagon is_a: GO:0071375 ! cellular response to peptide hormone stimulus intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:5391 ! glucagon -relationship: has_primary_input CHEBI:5391 ! glucagon +intersection_of: RO:0004009 CHEBI:5391 ! has primary input glucagon +relationship: RO:0004009 CHEBI:5391 ! has primary input glucagon created_by: mah creation_date: 2009-12-11T03:25:07Z @@ -104741,8 +104194,8 @@ is_a: GO:0048545 ! response to steroid hormone is_a: GO:0071396 ! cellular response to lipid is_a: GO:0071407 ! cellular response to organic cyclic compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:26764 ! steroid hormone -relationship: has_primary_input CHEBI:26764 ! steroid hormone +intersection_of: RO:0004009 CHEBI:26764 ! has primary input steroid hormone +relationship: RO:0004009 CHEBI:26764 ! has primary input steroid hormone created_by: mah creation_date: 2009-12-11T03:49:02Z @@ -104754,8 +104207,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:0031960 ! response to corticosteroid is_a: GO:0071383 ! cellular response to steroid hormone stimulus intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:36699 ! corticosteroid hormone -relationship: has_primary_input CHEBI:36699 ! corticosteroid hormone +intersection_of: RO:0004009 CHEBI:36699 ! has primary input corticosteroid hormone +relationship: RO:0004009 CHEBI:36699 ! has primary input corticosteroid hormone created_by: mah creation_date: 2009-12-11T03:52:07Z @@ -104767,8 +104220,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:0051384 ! response to glucocorticoid is_a: GO:0071384 ! cellular response to corticosteroid stimulus intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:24261 ! glucocorticoid -relationship: has_primary_input CHEBI:24261 ! glucocorticoid +intersection_of: RO:0004009 CHEBI:24261 ! has primary input glucocorticoid +relationship: RO:0004009 CHEBI:24261 ! has primary input glucocorticoid created_by: mah creation_date: 2009-12-11T03:53:56Z @@ -104780,8 +104233,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:0051385 ! response to mineralocorticoid is_a: GO:0071384 ! cellular response to corticosteroid stimulus intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:25354 ! mineralocorticoid -relationship: has_primary_input CHEBI:25354 ! mineralocorticoid +intersection_of: RO:0004009 CHEBI:25354 ! has primary input mineralocorticoid +relationship: RO:0004009 CHEBI:25354 ! has primary input mineralocorticoid created_by: mah creation_date: 2009-12-11T03:59:02Z @@ -104794,8 +104247,8 @@ is_a: GO:0032570 ! response to progesterone is_a: GO:0071383 ! cellular response to steroid hormone stimulus is_a: GO:1901655 ! cellular response to ketone intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:17026 ! progesterone -relationship: has_primary_input CHEBI:17026 ! progesterone +intersection_of: RO:0004009 CHEBI:17026 ! has primary input progesterone +relationship: RO:0004009 CHEBI:17026 ! has primary input progesterone created_by: mah creation_date: 2009-12-11T04:11:13Z @@ -104809,8 +104262,8 @@ is_a: GO:0071396 ! cellular response to lipid is_a: GO:0071407 ! cellular response to organic cyclic compound is_a: GO:1901655 ! cellular response to ketone intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:17347 ! testosterone -relationship: has_primary_input CHEBI:17347 ! testosterone +intersection_of: RO:0004009 CHEBI:17347 ! has primary input testosterone +relationship: RO:0004009 CHEBI:17347 ! has primary input testosterone created_by: mah creation_date: 2009-12-11T04:11:29Z @@ -104822,8 +104275,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:0033993 ! response to lipid is_a: GO:0070887 ! cellular response to chemical stimulus intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:18059 ! lipid -relationship: has_primary_input CHEBI:18059 ! lipid +intersection_of: RO:0004009 CHEBI:18059 ! has primary input lipid +relationship: RO:0004009 CHEBI:18059 ! has primary input lipid created_by: mah creation_date: 2009-12-11T04:37:10Z @@ -104836,8 +104289,8 @@ is_a: GO:0070542 ! response to fatty acid is_a: GO:0071396 ! cellular response to lipid is_a: GO:1901701 ! cellular response to oxygen-containing compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:28868 ! fatty acid anion -relationship: has_primary_input CHEBI:28868 ! fatty acid anion +intersection_of: RO:0004009 CHEBI:28868 ! has primary input fatty acid anion +relationship: RO:0004009 CHEBI:28868 ! has primary input fatty acid anion created_by: mah creation_date: 2009-12-11T04:39:56Z @@ -104850,36 +104303,21 @@ synonym: "cellular response to organic cyclic substance" EXACT [GOC:mah] is_a: GO:0014070 ! response to organic cyclic compound is_a: GO:0070887 ! cellular response to chemical stimulus intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:33832 ! organic cyclic compound -relationship: has_primary_input CHEBI:33832 ! organic cyclic compound +intersection_of: RO:0004009 CHEBI:33832 ! has primary input organic cyclic compound +relationship: RO:0004009 CHEBI:33832 ! has primary input organic cyclic compound created_by: mah creation_date: 2009-12-14T02:55:58Z -[Term] -id: GO:0071417 -name: cellular response to organonitrogen compound -namespace: biological_process -def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organonitrogen stimulus. An organonitrogen compound is formally a compound containing at least one carbon-nitrogen bond." [GOC:mah] -synonym: "cellular response to organic nitrogen" EXACT [GOC:mah] -is_a: GO:0010243 ! response to organonitrogen compound -is_a: GO:0071495 ! cellular response to endogenous stimulus -is_a: GO:1901699 ! cellular response to nitrogen compound -intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:35352 ! organonitrogen compound -relationship: has_primary_input CHEBI:35352 ! organonitrogen compound -created_by: mah -creation_date: 2009-12-14T04:07:27Z - [Term] id: GO:0071418 name: cellular response to amine stimulus namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amine stimulus. An amine is a compound formally derived from ammonia by replacing one, two or three hydrogen atoms by hydrocarbyl groups." [GOC:mah] is_a: GO:0014075 ! response to amine -is_a: GO:0071417 ! cellular response to organonitrogen compound +is_a: GO:1901699 ! cellular response to nitrogen compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:32952 ! amine -relationship: has_primary_input CHEBI:32952 ! amine +intersection_of: RO:0004009 CHEBI:32952 ! has primary input amine +relationship: RO:0004009 CHEBI:32952 ! has primary input amine created_by: mah creation_date: 2009-12-14T04:08:17Z @@ -104892,8 +104330,8 @@ synonym: "cellular response to histamine stimulus" EXACT [GOC:mah] is_a: GO:0034776 ! response to histamine is_a: GO:1901699 ! cellular response to nitrogen compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:58432 ! histaminium -relationship: has_primary_input CHEBI:58432 ! histaminium +intersection_of: RO:0004009 CHEBI:58432 ! has primary input histaminium +relationship: RO:0004009 CHEBI:58432 ! has primary input histaminium created_by: mah creation_date: 2009-12-14T04:09:25Z @@ -104905,9 +104343,9 @@ def: "The expansion of a hematopoietic stem cell population by cell division. A synonym: "hemopoietic stem cell proliferation" EXACT [] is_a: GO:0072089 ! stem cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000037 ! hematopoietic stem cell -relationship: acts_on_population_of CL:0000037 ! hematopoietic stem cell +intersection_of: RO:0012003 CL:0000037 ! acts on population of hematopoietic stem cell relationship: part_of GO:0030097 ! hemopoiesis +relationship: RO:0012003 CL:0000037 ! acts on population of hematopoietic stem cell created_by: mah creation_date: 2009-12-16T10:22:52Z @@ -104920,8 +104358,8 @@ is_a: GO:0009415 ! response to water is_a: GO:0071214 ! cellular response to abiotic stimulus is_a: GO:1901701 ! cellular response to oxygen-containing compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:15377 ! water -relationship: has_primary_input CHEBI:15377 ! water +intersection_of: RO:0004009 CHEBI:15377 ! has primary input water +relationship: RO:0004009 CHEBI:15377 ! has primary input water created_by: mah creation_date: 2009-12-18T11:32:44Z @@ -104955,8 +104393,8 @@ namespace: biological_process def: "The process in which a neuroblast acquires the specialized structural and functional features of a dopaminergic neuron, a neuron that secretes dopamine." [GOC:rph] is_a: GO:0030182 ! neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000700 ! dopaminergic neuron -relationship: results_in_acquisition_of_features_of CL:0000700 ! dopaminergic neuron +intersection_of: RO:0002315 CL:0000700 ! results in acquisition of features of dopaminergic neuron +relationship: RO:0002315 CL:0000700 ! results in acquisition of features of dopaminergic neuron created_by: mah creation_date: 2010-01-12T02:28:44Z @@ -104967,8 +104405,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the cement gland over time, from its formation to the mature structure. The cement gland is a simple mucus-secreting organ positioned at the anterior of amphibious embryos. The cement gland attaches the newly hatched embryo to a support before the hatchling can swim well or feed." [GOC:bf] is_a: GO:0048732 ! gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005093 ! embryonic cement gland -relationship: results_in_development_of UBERON:0005093 ! embryonic cement gland +intersection_of: RO:0002296 UBERON:0005093 ! results in development of embryonic cement gland +relationship: RO:0002296 UBERON:0005093 ! results in development of embryonic cement gland created_by: mah creation_date: 2010-01-20T04:31:04Z @@ -104982,8 +104420,8 @@ is_a: GO:0035295 ! tube development is_a: GO:0048839 ! inner ear development is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003051 ! ear vesicle -relationship: results_in_development_of UBERON:0003051 ! ear vesicle +intersection_of: RO:0002296 UBERON:0003051 ! results in development of ear vesicle +relationship: RO:0002296 UBERON:0003051 ! results in development of ear vesicle created_by: mah creation_date: 2010-02-04T04:07:17Z @@ -104996,9 +104434,9 @@ is_a: GO:0042472 ! inner ear morphogenesis is_a: GO:0048562 ! embryonic organ morphogenesis is_a: GO:0060562 ! epithelial tube morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003051 ! ear vesicle +intersection_of: RO:0002298 UBERON:0003051 ! results in morphogenesis of ear vesicle relationship: part_of GO:0071599 ! otic vesicle development -relationship: results_in_morphogenesis_of UBERON:0003051 ! ear vesicle +relationship: RO:0002298 UBERON:0003051 ! results in morphogenesis of ear vesicle created_by: mah creation_date: 2010-02-04T04:07:27Z @@ -105010,8 +104448,8 @@ def: "The movement of a granulocyte in response to an external stimulus." [GOC:r is_a: GO:0030595 ! leukocyte chemotaxis is_a: GO:0097530 ! granulocyte migration intersection_of: GO:0006935 ! chemotaxis -intersection_of: results_in_movement_of CL:0000094 ! granulocyte -relationship: results_in_movement_of CL:0000094 ! granulocyte +intersection_of: RO:0002565 CL:0000094 ! results in movement of granulocyte +relationship: RO:0002565 CL:0000094 ! results in movement of granulocyte created_by: mah creation_date: 2010-02-09T04:08:17Z @@ -105022,8 +104460,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency or extent of granulocyte chemotaxis. Granulocyte chemotaxis is the movement of a granulocyte in response to an external stimulus." [GOC:mah] is_a: GO:0002688 ! regulation of leukocyte chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0071621 ! granulocyte chemotaxis -relationship: regulates GO:0071621 ! granulocyte chemotaxis +intersection_of: RO:0002211 GO:0071621 ! regulates (processual) granulocyte chemotaxis +relationship: RO:0002211 GO:0071621 ! regulates (processual) granulocyte chemotaxis created_by: mah creation_date: 2010-02-09T04:09:24Z @@ -105035,8 +104473,8 @@ def: "Any process that decreases the rate, frequency or extent of granulocyte ch is_a: GO:0002689 ! negative regulation of leukocyte chemotaxis is_a: GO:0071622 ! regulation of granulocyte chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0071621 ! granulocyte chemotaxis -relationship: negatively_regulates GO:0071621 ! granulocyte chemotaxis +intersection_of: RO:0002212 GO:0071621 ! negatively regulates granulocyte chemotaxis +relationship: RO:0002212 GO:0071621 ! negatively regulates granulocyte chemotaxis created_by: mah creation_date: 2010-02-09T04:13:19Z @@ -105048,8 +104486,8 @@ def: "Any process that increases the rate, frequency or extent of granulocyte ch is_a: GO:0002690 ! positive regulation of leukocyte chemotaxis is_a: GO:0071622 ! regulation of granulocyte chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0071621 ! granulocyte chemotaxis -relationship: positively_regulates GO:0071621 ! granulocyte chemotaxis +intersection_of: RO:0002213 GO:0071621 ! positively regulates granulocyte chemotaxis +relationship: RO:0002213 GO:0071621 ! positively regulates granulocyte chemotaxis created_by: mah creation_date: 2010-02-09T04:15:36Z @@ -105081,8 +104519,8 @@ def: "The directed movement of a smooth muscle cell in response to an external s is_a: GO:0014909 ! smooth muscle cell migration is_a: GO:0060326 ! cell chemotaxis intersection_of: GO:0006935 ! chemotaxis -intersection_of: results_in_movement_of CL:0000192 ! smooth muscle cell -relationship: results_in_movement_of CL:0000192 ! smooth muscle cell +intersection_of: RO:0002565 CL:0000192 ! results in movement of smooth muscle cell +relationship: RO:0002565 CL:0000192 ! results in movement of smooth muscle cell created_by: mah creation_date: 2010-02-16T01:32:59Z @@ -105094,8 +104532,8 @@ def: "Any process that modulates the frequency, rate, or extent of smooth muscle is_a: GO:0014910 ! regulation of smooth muscle cell migration is_a: GO:0050920 ! regulation of chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0071670 ! smooth muscle cell chemotaxis -relationship: regulates GO:0071670 ! smooth muscle cell chemotaxis +intersection_of: RO:0002211 GO:0071670 ! regulates (processual) smooth muscle cell chemotaxis +relationship: RO:0002211 GO:0071670 ! regulates (processual) smooth muscle cell chemotaxis created_by: mah creation_date: 2010-02-16T01:42:03Z @@ -105112,8 +104550,8 @@ is_a: GO:0014912 ! negative regulation of smooth muscle cell migration is_a: GO:0050922 ! negative regulation of chemotaxis is_a: GO:0071671 ! regulation of smooth muscle cell chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0071670 ! smooth muscle cell chemotaxis -relationship: negatively_regulates GO:0071670 ! smooth muscle cell chemotaxis +intersection_of: RO:0002212 GO:0071670 ! negatively regulates smooth muscle cell chemotaxis +relationship: RO:0002212 GO:0071670 ! negatively regulates smooth muscle cell chemotaxis created_by: mah creation_date: 2010-02-16T01:44:28Z @@ -105131,8 +104569,8 @@ is_a: GO:0014911 ! positive regulation of smooth muscle cell migration is_a: GO:0050921 ! positive regulation of chemotaxis is_a: GO:0071671 ! regulation of smooth muscle cell chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0071670 ! smooth muscle cell chemotaxis -relationship: positively_regulates GO:0071670 ! smooth muscle cell chemotaxis +intersection_of: RO:0002213 GO:0071670 ! positively regulates smooth muscle cell chemotaxis +relationship: RO:0002213 GO:0071670 ! positively regulates smooth muscle cell chemotaxis created_by: mah creation_date: 2010-02-16T01:48:14Z @@ -105143,8 +104581,8 @@ namespace: biological_process def: "The movement of a mononuclear cell within or between different tissues and organs of the body." [GOC:mah] is_a: GO:0050900 ! leukocyte migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000842 ! mononuclear cell -relationship: results_in_movement_of CL:0000842 ! mononuclear cell +intersection_of: RO:0002565 CL:0000842 ! results in movement of mononuclear cell +relationship: RO:0002565 CL:0000842 ! results in movement of mononuclear cell created_by: mah creation_date: 2010-02-16T02:11:00Z @@ -105155,8 +104593,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency or extent of mononuclear cell migration. Mononuclear cell migration is the movement of a mononuclear cell within or between different tissues and organs of the body." [GOC:mah] is_a: GO:0002685 ! regulation of leukocyte migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0071674 ! mononuclear cell migration -relationship: regulates GO:0071674 ! mononuclear cell migration +intersection_of: RO:0002211 GO:0071674 ! regulates (processual) mononuclear cell migration +relationship: RO:0002211 GO:0071674 ! regulates (processual) mononuclear cell migration created_by: mah creation_date: 2010-02-16T02:11:53Z @@ -105172,8 +104610,8 @@ synonym: "inhibition of mononuclear cell migration" NARROW [GOC:mah] is_a: GO:0002686 ! negative regulation of leukocyte migration is_a: GO:0071675 ! regulation of mononuclear cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0071674 ! mononuclear cell migration -relationship: negatively_regulates GO:0071674 ! mononuclear cell migration +intersection_of: RO:0002212 GO:0071674 ! negatively regulates mononuclear cell migration +relationship: RO:0002212 GO:0071674 ! negatively regulates mononuclear cell migration created_by: mah creation_date: 2010-02-16T02:13:55Z @@ -105190,8 +104628,8 @@ synonym: "upregulation of mononuclear cell migration" EXACT [GOC:mah] is_a: GO:0002687 ! positive regulation of leukocyte migration is_a: GO:0071675 ! regulation of mononuclear cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0071674 ! mononuclear cell migration -relationship: positively_regulates GO:0071674 ! mononuclear cell migration +intersection_of: RO:0002213 GO:0071674 ! positively regulates mononuclear cell migration +relationship: RO:0002213 GO:0071674 ! positively regulates mononuclear cell migration created_by: mah creation_date: 2010-02-16T02:15:29Z @@ -105213,8 +104651,8 @@ synonym: "protein localisation in extracellular region" EXACT [GOC:mah] synonym: "protein localization in extracellular region" EXACT [] is_a: GO:0008104 ! protein localization intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005576 ! extracellular region -relationship: has_target_end_location GO:0005576 ! extracellular region +intersection_of: RO:0002339 GO:0005576 ! has target end location extracellular region +relationship: RO:0002339 GO:0005576 ! has target end location extracellular region created_by: mah creation_date: 2010-02-25T04:00:13Z @@ -105225,9 +104663,9 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for an anatomical structure to attain its fully functional state." [GOC:mah] is_a: GO:0021700 ! developmental maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0000061 ! anatomical structure +intersection_of: RO:0002299 UBERON:0000061 ! results in maturation of anatomical structure relationship: part_of GO:0048856 ! anatomical structure development -relationship: results_in_maturation_of UBERON:0000061 ! anatomical structure +relationship: RO:0002299 UBERON:0000061 ! results in maturation of anatomical structure created_by: mah creation_date: 2010-03-02T11:43:38Z @@ -105238,8 +104676,8 @@ namespace: biological_process def: "The progression of an ectodermal placode over time from its initial formation until its mature state. An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm." [GOC:mah] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005085 ! ectodermal placode -relationship: results_in_development_of UBERON:0005085 ! ectodermal placode +intersection_of: RO:0002296 UBERON:0005085 ! results in development of ectodermal placode +relationship: RO:0002296 UBERON:0005085 ! results in development of ectodermal placode created_by: mah creation_date: 2010-03-02T11:48:01Z @@ -105250,9 +104688,9 @@ namespace: biological_process def: "The process in which the anatomical structures of an ectodermal placode are generated and organized. An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm." [GOC:mah] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005085 ! ectodermal placode +intersection_of: RO:0002298 UBERON:0005085 ! results in morphogenesis of ectodermal placode relationship: part_of GO:0071696 ! ectodermal placode development -relationship: results_in_morphogenesis_of UBERON:0005085 ! ectodermal placode +relationship: RO:0002298 UBERON:0005085 ! results in morphogenesis of ectodermal placode created_by: mah creation_date: 2010-03-02T11:49:51Z @@ -105263,8 +104701,8 @@ namespace: biological_process def: "The progression of the olfactory placode over time from its initial formation until its mature state. The olfactory placode is a thickening of the neural ectoderm in the head region of the vertebrate embryo which develops into the olfactory region of the nasal cavity." [GOC:mah] is_a: GO:0071696 ! ectodermal placode development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003050 ! olfactory placode -relationship: results_in_development_of UBERON:0003050 ! olfactory placode +intersection_of: RO:0002296 UBERON:0003050 ! results in development of olfactory placode +relationship: RO:0002296 UBERON:0003050 ! results in development of olfactory placode created_by: mah creation_date: 2010-03-02T12:45:14Z @@ -105276,9 +104714,9 @@ def: "The process in which the anatomical structures of the olfactory placode ar is_a: GO:0048598 ! embryonic morphogenesis is_a: GO:0071697 ! ectodermal placode morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003050 ! olfactory placode +intersection_of: RO:0002298 UBERON:0003050 ! results in morphogenesis of olfactory placode relationship: part_of GO:0071698 ! olfactory placode development -relationship: results_in_morphogenesis_of UBERON:0003050 ! olfactory placode +relationship: RO:0002298 UBERON:0003050 ! results in morphogenesis of olfactory placode created_by: mah creation_date: 2010-03-02T12:45:45Z @@ -105289,9 +104727,9 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for the olfactory placode to attain its fully functional state. The olfactory placode is a thickening of the neural ectoderm in the head region of the vertebrate embryo which develops into the olfactory region of the nasal cavity." [GOC:mah] is_a: GO:0071695 ! anatomical structure maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0003050 ! olfactory placode +intersection_of: RO:0002299 UBERON:0003050 ! results in maturation of olfactory placode relationship: part_of GO:0071698 ! olfactory placode development -relationship: results_in_maturation_of UBERON:0003050 ! olfactory placode +relationship: RO:0002299 UBERON:0003050 ! results in maturation of olfactory placode created_by: mah creation_date: 2010-03-02T01:10:54Z @@ -105300,11 +104738,11 @@ id: GO:0071705 name: nitrogen compound transport namespace: biological_process def: "The directed movement of nitrogen-containing compounds into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:51143 ! nitrogen molecular entity -relationship: has_primary_input CHEBI:51143 ! nitrogen molecular entity +intersection_of: RO:0004009 CHEBI:51143 ! has primary input nitrogen molecular entity +relationship: RO:0004009 CHEBI:51143 ! has primary input nitrogen molecular entity created_by: mah creation_date: 2010-03-08T03:56:28Z @@ -105340,9 +104778,9 @@ def: "The aggregation, arrangement and bonding together of a set of components t is_a: GO:0022607 ! cellular component assembly is_a: GO:0061024 ! membrane organization intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0016020 ! membrane +intersection_of: RO:0002588 GO:0016020 ! results in assembly of membrane relationship: part_of GO:0044091 ! membrane biogenesis -relationship: results_in_assembly_of GO:0016020 ! membrane +relationship: RO:0002588 GO:0016020 ! results in assembly of membrane created_by: mah creation_date: 2010-03-10T11:19:17Z @@ -105355,8 +104793,8 @@ comment: Note that this term has no relationship to 'membrane organization ; GO: synonym: "basement membrane organisation" EXACT [GOC:mah] is_a: GO:0030198 ! extracellular matrix organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005604 ! basement membrane -relationship: results_in_organization_of GO:0005604 ! basement membrane +intersection_of: RO:0002592 GO:0005604 ! results in organization of basement membrane +relationship: RO:0002592 GO:0005604 ! results in organization of basement membrane created_by: mah creation_date: 2010-03-10T11:57:10Z @@ -105367,8 +104805,8 @@ namespace: biological_process def: "The progression of the beak over time from its initial formation until its mature state. The avian beak is an external anatomical structure, in the head region, that is adapted for feeding self and young, catching prey, probing, etc. It encompasses, but is not restricted to, the maxilla, mandible, maxillary rhamphotheca, mandibular rhamphotheca, nostril, nasal fossa, nasal bones, egg tooth and rictus." [GOC:lp, ISBN:0702008729] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005094 ! beak -relationship: results_in_development_of UBERON:0005094 ! beak +intersection_of: RO:0002296 UBERON:0005094 ! results in development of beak +relationship: RO:0002296 UBERON:0005094 ! results in development of beak created_by: mah creation_date: 2010-03-17T03:52:48Z @@ -105379,9 +104817,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the beak are generated and organized. The avian beak is an external anatomical structure, in the head region, that is adapted for feeding self and young, catching prey, probing, etc. It encompasses, but is not restricted to, the maxilla, mandible, maxillary rhamphotheca, mandibular rhamphotheca, nostril, nasal fossa, nasal bones, egg tooth and rictus." [GOC:lp, ISBN:0702008729] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005094 ! beak +intersection_of: RO:0002298 UBERON:0005094 ! results in morphogenesis of beak relationship: part_of GO:0071728 ! beak development -relationship: results_in_morphogenesis_of UBERON:0005094 ! beak +relationship: RO:0002298 UBERON:0005094 ! results in morphogenesis of beak created_by: mah creation_date: 2010-03-17T03:54:34Z @@ -105392,9 +104830,9 @@ namespace: biological_process def: "The process that gives rise to the beak. This process pertains to the initial formation of a structure from unspecified parts. The avian beak is an external anatomical structure, in the head region, that is adapted for feeding self and young, catching prey, probing, etc. It encompasses, but is not restricted to, the maxilla, mandible, maxillary rhamphotheca, mandibular rhamphotheca, nostril, nasal fossa, nasal bones, egg tooth and rictus." [GOC:lp, ISBN:0702008729] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005094 ! beak +intersection_of: RO:0002297 UBERON:0005094 ! results in formation of anatomical entity beak relationship: part_of GO:0071729 ! beak morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005094 ! beak +relationship: RO:0002297 UBERON:0005094 ! results in formation of anatomical entity beak created_by: mah creation_date: 2010-03-17T03:57:07Z @@ -105466,9 +104904,9 @@ synonym: "nuclear membrane organisation" EXACT [GOC:mah] synonym: "nuclear membrane organization and biogenesis" RELATED [GOC:mah] is_a: GO:0061024 ! membrane organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0031965 ! nuclear membrane +intersection_of: RO:0002592 GO:0031965 ! results in organization of nuclear membrane relationship: part_of GO:0006998 ! nuclear envelope organization -relationship: results_in_organization_of GO:0031965 ! nuclear membrane +relationship: RO:0002592 GO:0031965 ! results in organization of nuclear membrane created_by: mah creation_date: 2010-03-29T03:59:35Z @@ -105481,12 +104919,33 @@ synonym: "nuclear outer membrane organisation" EXACT [GOC:mah] synonym: "nuclear outer membrane organization and biogenesis" RELATED [GOC:mah] is_a: GO:0071763 ! nuclear membrane organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005640 ! nuclear outer membrane +intersection_of: RO:0002592 GO:0005640 ! results in organization of nuclear outer membrane relationship: part_of GO:0010256 ! endomembrane system organization -relationship: results_in_organization_of GO:0005640 ! nuclear outer membrane +relationship: RO:0002592 GO:0005640 ! results in organization of nuclear outer membrane created_by: mah creation_date: 2010-03-29T04:03:37Z +[Term] +id: GO:0071805 +name: potassium ion transmembrane transport +namespace: biological_process +alt_id: GO:0010163 +def: "A process in which a potassium ion is transported from one side of a membrane to the other." [GOC:mah] +comment: Note that this term is not intended for use in annotating lateral movement within membranes. +synonym: "high affinity potassium ion import" NARROW [] +synonym: "high affinity potassium ion uptake" NARROW [GOC:dph, GOC:tb] +synonym: "high-affinity potassium ion import" NARROW [] +synonym: "high-affinity potassium ion uptake" NARROW [GOC:dph, GOC:tb] +synonym: "potassium ion membrane transport" EXACT [] +is_a: GO:0006813 ! potassium ion transport +is_a: GO:0098655 ! monoatomic cation transmembrane transport +is_a: GO:0098662 ! inorganic cation transmembrane transport +intersection_of: GO:0055085 ! transmembrane transport +intersection_of: RO:0004009 CHEBI:29103 ! has primary input potassium(1+) +relationship: RO:0004009 CHEBI:29103 ! has primary input potassium(1+) +created_by: mah +creation_date: 2010-09-03T02:43:49Z + [Term] id: GO:0071806 name: protein transmembrane transport @@ -105497,28 +104956,13 @@ synonym: "protein membrane transport" EXACT [] is_a: GO:0045184 ! establishment of protein localization is_a: GO:0055085 ! transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:36080 ! protein -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:36080 ! protein -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:36080 ! has primary input protein +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:36080 ! has primary input protein created_by: mah creation_date: 2010-09-03T02:54:26Z -[Term] -id: GO:0071824 -name: protein-DNA complex organization -namespace: biological_process -def: "Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a protein-DNA complex." [GOC:mah] -synonym: "DNA-protein complex subunit organization" EXACT [GOC:mah] -synonym: "protein-DNA complex subunit organisation" EXACT [GOC:mah] -synonym: "protein-DNA complex subunit organization" EXACT [] -is_a: GO:0043933 ! protein-containing complex organization -intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0032993 ! protein-DNA complex -relationship: results_in_organization_of GO:0032993 ! protein-DNA complex -created_by: mah -creation_date: 2010-09-08T10:03:26Z - [Term] id: GO:0071826 name: protein-RNA complex organization @@ -105530,8 +104974,8 @@ synonym: "ribonucleoprotein complex subunit organization" EXACT [] synonym: "RNA-protein complex subunit organization" EXACT [GOC:mah] is_a: GO:0043933 ! protein-containing complex organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:1990904 ! ribonucleoprotein complex -relationship: results_in_organization_of GO:1990904 ! ribonucleoprotein complex +intersection_of: RO:0002592 GO:1990904 ! results in organization of ribonucleoprotein complex +relationship: RO:0002592 GO:1990904 ! results in organization of ribonucleoprotein complex property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/25143" xsd:anyURI created_by: mah creation_date: 2010-09-08T10:10:35Z @@ -105570,10 +105014,10 @@ name: response to monoamine namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monoamine stimulus. A monoamine is any of a group of molecular messengers that contain one amino group that is connected to an aromatic ring by ethylene group (-CH2-CH2-). Monoamines are derived from the aromatic amino acids phenylalanine, tyrosine, histidine and tryptophan." [GOC:mah] synonym: "response to monoamine stimulus" EXACT [GOC:dos] -is_a: GO:0010243 ! response to organonitrogen compound +is_a: GO:1901698 ! response to nitrogen compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:63534 ! monoamine -relationship: has_primary_input CHEBI:63534 ! monoamine +intersection_of: RO:0004009 CHEBI:63534 ! has primary input monoamine +relationship: RO:0004009 CHEBI:63534 ! has primary input monoamine created_by: mah creation_date: 2010-09-13T02:36:37Z @@ -105582,11 +105026,11 @@ id: GO:0071868 name: cellular response to monoamine stimulus namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monoamine stimulus. A monoamine is any of a group of molecular messengers that contain one amino group that is connected to an aromatic ring by ethylene group (-CH2-CH2-). Monoamines are derived from the aromatic amino acids phenylalanine, tyrosine, histidine and tryptophan." [GOC:mah] -is_a: GO:0071417 ! cellular response to organonitrogen compound is_a: GO:0071867 ! response to monoamine +is_a: GO:1901699 ! cellular response to nitrogen compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:63534 ! monoamine -relationship: has_primary_input CHEBI:63534 ! monoamine +intersection_of: RO:0004009 CHEBI:63534 ! has primary input monoamine +relationship: RO:0004009 CHEBI:63534 ! has primary input monoamine created_by: mah creation_date: 2010-09-13T02:38:52Z @@ -105600,8 +105044,8 @@ is_a: GO:0014070 ! response to organic cyclic compound is_a: GO:0071867 ! response to monoamine is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:33567 ! catecholamine -relationship: has_primary_input CHEBI:33567 ! catecholamine +intersection_of: RO:0004009 CHEBI:33567 ! has primary input catecholamine +relationship: RO:0004009 CHEBI:33567 ! has primary input catecholamine created_by: mah creation_date: 2010-09-13T02:51:13Z @@ -105615,8 +105059,8 @@ is_a: GO:0071868 ! cellular response to monoamine stimulus is_a: GO:0071869 ! response to catecholamine is_a: GO:1901701 ! cellular response to oxygen-containing compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:33567 ! catecholamine -relationship: has_primary_input CHEBI:33567 ! catecholamine +intersection_of: RO:0004009 CHEBI:33567 ! has primary input catecholamine +relationship: RO:0004009 CHEBI:33567 ! has primary input catecholamine created_by: mah creation_date: 2010-09-13T02:54:50Z @@ -105630,8 +105074,8 @@ synonym: "response to noradrenaline stimulus" EXACT [GOC:mah] synonym: "response to norepinephrine stimulus" EXACT [GOC:dos] is_a: GO:1901698 ! response to nitrogen compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) -relationship: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) +intersection_of: RO:0004009 CHEBI:72587 ! has primary input (R)-noradrenaline(1+) +relationship: RO:0004009 CHEBI:72587 ! has primary input (R)-noradrenaline(1+) created_by: mah creation_date: 2010-09-13T03:31:53Z @@ -105645,8 +105089,8 @@ synonym: "cellular response to noradrenaline stimulus" EXACT [GOC:mah] is_a: GO:0071873 ! response to norepinephrine is_a: GO:1901699 ! cellular response to nitrogen compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) -relationship: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) +intersection_of: RO:0004009 CHEBI:72587 ! has primary input (R)-noradrenaline(1+) +relationship: RO:0004009 CHEBI:72587 ! has primary input (R)-noradrenaline(1+) created_by: mah creation_date: 2010-09-13T03:33:32Z @@ -105659,10 +105103,10 @@ comment: Note that a lymphocyte is a cell of the B cell, T cell, or natural kill synonym: "leukocyte apoptosis" NARROW [] is_a: GO:0006915 ! apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000738 ! leukocyte +intersection_of: BFO:0000066 CL:0000738 ! occurs in leukocyte +relationship: BFO:0000066 CL:0000738 ! occurs in leukocyte relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: occurs_in CL:0000738 ! leukocyte -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata created_by: mah creation_date: 2010-09-14T12:44:09Z @@ -105679,8 +105123,8 @@ is_a: GO:0006925 ! inflammatory cell apoptotic process is_a: GO:0033028 ! myeloid cell apoptotic process is_a: GO:0071887 ! leukocyte apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000235 ! macrophage -relationship: occurs_in CL:0000235 ! macrophage +intersection_of: BFO:0000066 CL:0000235 ! occurs in macrophage +relationship: BFO:0000066 CL:0000235 ! occurs in macrophage created_by: mah creation_date: 2010-09-14T12:50:40Z @@ -105693,8 +105137,8 @@ synonym: "CHO3- ion binding binding" EXACT [] synonym: "hydrogencarbonate binding" EXACT [CHEBI:17544] is_a: GO:0043168 ! anion binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:17544 ! hydrogencarbonate -relationship: has_primary_input CHEBI:17544 ! hydrogencarbonate +intersection_of: RO:0004009 CHEBI:17544 ! has primary input hydrogencarbonate +relationship: RO:0004009 CHEBI:17544 ! has primary input hydrogencarbonate created_by: mah creation_date: 2010-09-14T01:47:43Z @@ -105705,8 +105149,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell of neural crest origin acquires the specialized features of an odontoblast, a cell on the outer surface of the dental pulp whose biological function is the creation of dentin." [GOC:sl, PMID:20425127] is_a: GO:0060563 ! neuroepithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000060 ! odontoblast -relationship: results_in_acquisition_of_features_of CL:0000060 ! odontoblast +intersection_of: RO:0002315 CL:0000060 ! results in acquisition of features of odontoblast +relationship: RO:0002315 CL:0000060 ! results in acquisition of features of odontoblast created_by: mah creation_date: 2010-09-14T04:00:40Z @@ -105722,8 +105166,8 @@ synonym: "DNA synthesis" EXACT [GOC:mah] is_a: GO:0006259 ! DNA metabolic process is_a: GO:0141187 ! nucleic acid biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:16991 ! deoxyribonucleic acid -relationship: has_primary_output CHEBI:16991 ! deoxyribonucleic acid +intersection_of: RO:0004008 CHEBI:16991 ! has primary output deoxyribonucleic acid +relationship: RO:0004008 CHEBI:16991 ! has primary output deoxyribonucleic acid created_by: mah creation_date: 2010-09-15T02:14:33Z @@ -105733,7 +105177,7 @@ name: cell periphery namespace: cellular_component def: "The broad region around and including the plasma membrane of a cell, encompassing the cell cortex (inside the cell), the plasma membrane, and any external encapsulating structures." [GOC:pdt] subset: goslim_flybase_ribbon -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure created_by: mah creation_date: 2010-10-04T01:51:47Z @@ -105758,9 +105202,9 @@ synonym: "extracellular vesicular exosome assembly" EXACT [GOC:vesicles] is_a: GO:0016050 ! vesicle organization is_a: GO:0070925 ! organelle assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0070062 ! extracellular exosome +intersection_of: RO:0002588 GO:0070062 ! results in assembly of extracellular exosome relationship: part_of GO:0097734 ! extracellular exosome biogenesis -relationship: results_in_assembly_of GO:0070062 ! extracellular exosome +relationship: RO:0002588 GO:0070062 ! results in assembly of extracellular exosome created_by: mah creation_date: 2010-10-18T03:44:18Z @@ -105774,8 +105218,8 @@ synonym: "urinary system development" BROAD [GOC:yaf] synonym: "urinary tract development" BROAD [GOC:yaf, PMID:17881463] is_a: GO:0048731 ! system development intersection_of: GO:0048731 ! system development -intersection_of: results_in_development_of UBERON:0001008 ! renal system -relationship: results_in_development_of UBERON:0001008 ! renal system +intersection_of: RO:0002296 UBERON:0001008 ! results in development of renal system +relationship: RO:0002296 UBERON:0001008 ! results in development of renal system created_by: mah creation_date: 2010-01-25T10:31:00Z @@ -105787,10 +105231,10 @@ def: "The process whose specific outcome is the progression of the Malpighian tu is_a: GO:0048513 ! animal organ development is_a: GO:0061326 ! renal tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001054 ! Malpighian tubule +intersection_of: RO:0002296 UBERON:0001054 ! results in development of Malpighian tubule relationship: in_taxon NCBITaxon:50557 {all_only="true"} ! Insecta -relationship: only_in_taxon NCBITaxon:50557 ! Insecta -relationship: results_in_development_of UBERON:0001054 ! Malpighian tubule +relationship: RO:0002160 NCBITaxon:50557 ! only in taxon Insecta +relationship: RO:0002296 UBERON:0001054 ! results in development of Malpighian tubule created_by: mah creation_date: 2010-01-25T10:54:30Z @@ -105802,9 +105246,9 @@ def: "The developmental process pertaining to the initial formation of a kidney synonym: "kidney anlage formation" RELATED [GOC:mtg_kidney_jan10] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005095 ! kidney rudiment +intersection_of: RO:0002297 UBERON:0005095 ! results in formation of anatomical entity kidney rudiment relationship: part_of GO:0060993 ! kidney morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005095 ! kidney rudiment +relationship: RO:0002297 UBERON:0005095 ! results in formation of anatomical entity kidney rudiment created_by: mah creation_date: 2010-01-25T11:18:58Z @@ -105816,9 +105260,9 @@ def: "The process whose specific outcome is the progression of the nephron over synonym: "nephrogenesis" RELATED [GOC:rph] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001285 ! nephron +intersection_of: RO:0002296 UBERON:0001285 ! results in development of nephron relationship: part_of GO:0001822 ! kidney development -relationship: results_in_development_of UBERON:0001285 ! nephron +relationship: RO:0002296 UBERON:0001285 ! results in development of nephron created_by: mah creation_date: 2010-01-25T01:37:16Z @@ -105830,8 +105274,8 @@ def: "The process in which relatively unspecialized cells acquire specialized st is_a: GO:0061005 ! cell differentiation involved in kidney development is_a: GO:1904238 ! pericyte cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000650 ! mesangial cell -relationship: results_in_acquisition_of_features_of CL:0000650 ! mesangial cell +intersection_of: RO:0002315 CL:0000650 ! results in acquisition of features of mesangial cell +relationship: RO:0002315 CL:0000650 ! results in acquisition of features of mesangial cell created_by: mah creation_date: 2010-01-25T01:59:09Z @@ -105842,9 +105286,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the nephron epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. The nephron epithelium is a tissue that covers the surface of a nephron." [GOC:mtg_kidney_jan10] is_a: GO:0072073 ! kidney epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004211 ! nephron epithelium +intersection_of: RO:0002296 UBERON:0004211 ! results in development of nephron epithelium relationship: part_of GO:0072006 ! nephron development -relationship: results_in_development_of UBERON:0004211 ! nephron epithelium +relationship: RO:0002296 UBERON:0004211 ! results in development of nephron epithelium created_by: mah creation_date: 2010-01-25T02:01:39Z @@ -105855,9 +105299,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the glomerular epithelium over time, from its formation to the mature structure. The glomerular epithelium is an epithelial tissue that covers the outer surfaces of the glomerulus. The glomerular epithelium consists of both parietal and visceral epithelium. Metanephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros." [GOC:mtg_kidney_jan10] is_a: GO:0072009 ! nephron epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004188 ! glomerular epithelium +intersection_of: RO:0002296 UBERON:0004188 ! results in development of glomerular epithelium relationship: part_of GO:0032835 ! glomerulus development -relationship: results_in_development_of UBERON:0004188 ! glomerular epithelium +relationship: RO:0002296 UBERON:0004188 ! results in development of glomerular epithelium created_by: mah creation_date: 2010-01-25T02:02:14Z @@ -105869,9 +105313,9 @@ def: "The process whose specific outcome is the progression of the glomerular en is_a: GO:0003158 ! endothelium development is_a: GO:0072010 ! glomerular epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004189 ! glomerular endothelium +intersection_of: RO:0002296 UBERON:0004189 ! results in development of glomerular endothelium relationship: part_of GO:0072012 ! glomerulus vasculature development -relationship: results_in_development_of UBERON:0004189 ! glomerular endothelium +relationship: RO:0002296 UBERON:0004189 ! results in development of glomerular endothelium created_by: mah creation_date: 2010-01-25T02:02:57Z @@ -105884,9 +105328,9 @@ synonym: "glomerulus capillary development" RELATED [GOC:mtg_kidney_jan10] is_a: GO:0001568 ! blood vessel development is_a: GO:0061440 ! kidney vasculature development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004190 ! renal glomerulus vasculature +intersection_of: RO:0002296 UBERON:0004190 ! results in development of renal glomerulus vasculature relationship: part_of GO:0032835 ! glomerulus development -relationship: results_in_development_of UBERON:0004190 ! renal glomerulus vasculature +relationship: RO:0002296 UBERON:0004190 ! results in development of renal glomerulus vasculature created_by: mah creation_date: 2010-01-25T02:05:04Z @@ -105897,8 +105341,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the proximal tubule over time, from its formation to the mature structure. In mammals, the proximal tubule is a nephron tubule that connects Bowman's capsule to the descending thin limb of the loop of Henle. It has a brush border epithelial morphology." [GOC:mtg_kidney_jan10] is_a: GO:0072080 ! nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004134 ! proximal tubule -relationship: results_in_development_of UBERON:0004134 ! proximal tubule +intersection_of: RO:0002296 UBERON:0004134 ! results in development of proximal tubule +relationship: RO:0002296 UBERON:0004134 ! results in development of proximal tubule created_by: mah creation_date: 2010-01-25T02:33:46Z @@ -105910,9 +105354,9 @@ def: "The process whose specific outcome is the progression of a glomerular visc synonym: "glomerular visceral epithelial cell development" EXACT [] is_a: GO:0072310 ! glomerular epithelial cell development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of CL:0000653 ! podocyte +intersection_of: RO:0002296 CL:0000653 ! results in development of podocyte relationship: part_of GO:0072112 ! podocyte differentiation -relationship: results_in_development_of CL:0000653 ! podocyte +relationship: RO:0002296 CL:0000653 ! results in development of podocyte property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23000" xsd:anyURI created_by: mah creation_date: 2010-01-25T02:12:45Z @@ -105925,9 +105369,9 @@ def: "The process whose specific outcome is the progression of a glomerular pari synonym: "Bowman's capsule development" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0072310 ! glomerular epithelial cell development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001230 ! glomerular capsule +intersection_of: RO:0002296 UBERON:0001230 ! results in development of glomerular capsule relationship: part_of GO:0072139 ! glomerular parietal epithelial cell differentiation -relationship: results_in_development_of UBERON:0001230 ! glomerular capsule +relationship: RO:0002296 UBERON:0001230 ! results in development of glomerular capsule created_by: mah creation_date: 2010-01-25T02:13:16Z @@ -105938,8 +105382,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the distal tubule over time, from its formation to the mature structure. In mammals, the distal tubule is a nephron tubule that begins at the macula densa and extends to the connecting tubule." [GOC:mtg_kidney_jan10] is_a: GO:0072080 ! nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004135 ! distal tubule -relationship: results_in_development_of UBERON:0004135 ! distal tubule +intersection_of: RO:0002296 UBERON:0004135 ! results in development of distal tubule +relationship: RO:0002296 UBERON:0004135 ! results in development of distal tubule created_by: mah creation_date: 2010-01-25T02:34:19Z @@ -105950,9 +105394,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the proximal convoluted tubule over time, from its formation to the mature structure. The proximal convoluted tubule is the most proximal portion of the proximal tubule and extends from the glomerular capsule to the proximal straight tubule." [GOC:mtg_kidney_jan10] is_a: GO:0072080 ! nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001287 ! proximal convoluted tubule +intersection_of: RO:0002296 UBERON:0001287 ! results in development of proximal convoluted tubule relationship: part_of GO:0072014 ! proximal tubule development -relationship: results_in_development_of UBERON:0001287 ! proximal convoluted tubule +relationship: RO:0002296 UBERON:0001287 ! results in development of proximal convoluted tubule created_by: mah creation_date: 2010-01-25T02:35:35Z @@ -105964,9 +105408,9 @@ def: "The process whose specific outcome is the progression of the proximal stra synonym: "S3 development" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0072080 ! nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001290 ! proximal straight tubule +intersection_of: RO:0002296 UBERON:0001290 ! results in development of proximal straight tubule relationship: part_of GO:0072014 ! proximal tubule development -relationship: results_in_development_of UBERON:0001290 ! proximal straight tubule +relationship: RO:0002296 UBERON:0001290 ! results in development of proximal straight tubule created_by: mah creation_date: 2010-01-25T02:36:14Z @@ -105977,9 +105421,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of an ascending thin limb over time, from its formation to the mature structure. The ascending thin limb is a segment of a nephron tubule lying in the inner medulla that is permeable to ions but not to water and has a simple epithelium; active transepithelial solute transport is absent." [GOC:mtg_kidney_jan10] is_a: GO:0072080 ! nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004193 ! loop of Henle ascending limb thin segment +intersection_of: RO:0002296 UBERON:0004193 ! results in development of loop of Henle ascending limb thin segment relationship: part_of GO:0072070 ! loop of Henle development -relationship: results_in_development_of UBERON:0004193 ! loop of Henle ascending limb thin segment +relationship: RO:0002296 UBERON:0004193 ! results in development of loop of Henle ascending limb thin segment created_by: mah creation_date: 2010-01-25T02:37:13Z @@ -105990,9 +105434,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the descending thin limb over time, from its formation to the mature structure. The descending thin limb is a part of the loop of Henle situated just after the proximal straight tubule (S3). It extends to the tip of the loop of Henle." [GOC:mtg_kidney_jan10] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005096 ! descending thin limb +intersection_of: RO:0002296 UBERON:0005096 ! results in development of descending thin limb relationship: part_of GO:0072070 ! loop of Henle development -relationship: results_in_development_of UBERON:0005096 ! descending thin limb +relationship: RO:0002296 UBERON:0005096 ! results in development of descending thin limb created_by: mah creation_date: 2010-01-25T02:37:47Z @@ -106005,9 +105449,9 @@ def: "The process whose specific outcome is the progression of the thick ascendi synonym: "TAL development" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0072080 ! nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001291 ! thick ascending limb of loop of Henle +intersection_of: RO:0002296 UBERON:0001291 ! results in development of thick ascending limb of loop of Henle relationship: part_of GO:0072017 ! distal tubule development -relationship: results_in_development_of UBERON:0001291 ! thick ascending limb of loop of Henle +relationship: RO:0002296 UBERON:0001291 ! results in development of thick ascending limb of loop of Henle created_by: mah creation_date: 2010-01-25T02:39:51Z @@ -106018,10 +105462,10 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the macula densa over time, from its formation to the mature structure. The macula densa is an area of specialized cells in the distal tubule that makes contact with the vascular pole of the glomerulus." [GOC:mtg_kidney_jan10] is_a: GO:0072009 ! nephron epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002335 ! macula densa +intersection_of: RO:0002296 UBERON:0002335 ! results in development of macula densa relationship: part_of GO:0072006 ! nephron development relationship: part_of GO:0072051 ! juxtaglomerular apparatus development -relationship: results_in_development_of UBERON:0002335 ! macula densa +relationship: RO:0002296 UBERON:0002335 ! results in development of macula densa created_by: mah creation_date: 2010-01-25T02:40:15Z @@ -106032,9 +105476,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the distal convoluted tubule over time, from its formation to the mature structure. The distal convoluted tubule is the first segment of the nephron lying just downstream from the loop of Henle, immediately after the macula densa. Among other functions, in humans it is responsible for the reabsorption of about 5% of filtered sodium via the thiazide-sensitive Na-Cl symporter." [GOC:mtg_kidney_jan10] is_a: GO:0072080 ! nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001292 ! distal convoluted tubule +intersection_of: RO:0002296 UBERON:0001292 ! results in development of distal convoluted tubule relationship: part_of GO:0072017 ! distal tubule development -relationship: results_in_development_of UBERON:0001292 ! distal convoluted tubule +relationship: RO:0002296 UBERON:0001292 ! results in development of distal convoluted tubule created_by: mah creation_date: 2010-01-25T02:40:45Z @@ -106046,8 +105490,8 @@ def: "The process whose specific outcome is the progression of the connecting tu synonym: "connecting duct development" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0072080 ! nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005097 ! renal connecting tubule -relationship: results_in_development_of UBERON:0005097 ! renal connecting tubule +intersection_of: RO:0002296 UBERON:0005097 ! results in development of renal connecting tubule +relationship: RO:0002296 UBERON:0005097 ! results in development of renal connecting tubule created_by: mah creation_date: 2010-01-25T02:42:05Z @@ -106058,10 +105502,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the nephron are generated and organized. A nephron is the functional unit of the kidney." [GOC:mtg_kidney_jan10] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001285 ! nephron +intersection_of: RO:0002298 UBERON:0001285 ! results in morphogenesis of nephron relationship: part_of GO:0060993 ! kidney morphogenesis relationship: part_of GO:0072006 ! nephron development -relationship: results_in_morphogenesis_of UBERON:0001285 ! nephron +relationship: RO:0002298 UBERON:0001285 ! results in morphogenesis of nephron created_by: mah creation_date: 2010-01-25T02:45:52Z @@ -106073,8 +105517,8 @@ def: "The process whose specific outcome is the progression of a long nephron ov synonym: "juxtamedullary nephron development" RELATED [GOC:mtg_kidney_jan10] is_a: GO:0072006 ! nephron development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004194 ! long nephron -relationship: results_in_development_of UBERON:0004194 ! long nephron +intersection_of: RO:0002296 UBERON:0004194 ! results in development of long nephron +relationship: RO:0002296 UBERON:0004194 ! results in development of long nephron created_by: mah creation_date: 2010-01-25T02:49:08Z @@ -106085,8 +105529,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a short nephron over time, from its formation to the mature structure. Short nephrons are associated with mid-cortical and superficial glomeruli, are situated entirely in the outer medulla, and have no thin ascending limb." [GOC:mtg_kidney_jan10] is_a: GO:0072006 ! nephron development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004195 ! short nephron -relationship: results_in_development_of UBERON:0004195 ! short nephron +intersection_of: RO:0002296 UBERON:0004195 ! results in development of short nephron +relationship: RO:0002296 UBERON:0004195 ! results in development of short nephron created_by: mah creation_date: 2010-01-25T02:49:32Z @@ -106098,9 +105542,9 @@ def: "The process whose specific outcome is the progression of the S1 portion of synonym: "S1 development" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0035295 ! tube development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004196 ! proximal convoluted tubule segment 1 +intersection_of: RO:0002296 UBERON:0004196 ! results in development of proximal convoluted tubule segment 1 relationship: part_of GO:0072019 ! proximal convoluted tubule development -relationship: results_in_development_of UBERON:0004196 ! proximal convoluted tubule segment 1 +relationship: RO:0002296 UBERON:0004196 ! results in development of proximal convoluted tubule segment 1 created_by: mah creation_date: 2010-01-25T02:55:57Z @@ -106112,9 +105556,9 @@ def: "The process whose specific outcome is the progression of the S2 portion of synonym: "S2 development" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0035295 ! tube development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004197 ! proximal convoluted tubule segment 2 +intersection_of: RO:0002296 UBERON:0004197 ! results in development of proximal convoluted tubule segment 2 relationship: part_of GO:0072019 ! proximal convoluted tubule development -relationship: results_in_development_of UBERON:0004197 ! proximal convoluted tubule segment 2 +relationship: RO:0002296 UBERON:0004197 ! results in development of proximal convoluted tubule segment 2 created_by: mah creation_date: 2010-01-25T02:56:36Z @@ -106126,9 +105570,9 @@ def: "The developmental process pertaining to the initial formation of the renal synonym: "nephron epithelium formation" RELATED [GOC:mtg_kidney_jan10] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0004209 ! renal vesicle +intersection_of: RO:0002297 UBERON:0004209 ! results in formation of anatomical entity renal vesicle relationship: part_of GO:0072077 ! renal vesicle morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0004209 ! renal vesicle +relationship: RO:0002297 UBERON:0004209 ! results in formation of anatomical entity renal vesicle created_by: mah creation_date: 2010-01-25T02:57:03Z @@ -106166,9 +105610,9 @@ is_a: GO:1902337 ! regulation of apoptotic process involved in morphogenesis is_a: GO:1904672 ! regulation of somatic stem cell population maintenance is_a: GO:2001053 ! regulation of mesenchymal cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1901145 ! mesenchymal cell apoptotic process involved in nephron morphogenesis -relationship: regulates GO:0072038 ! mesenchymal stem cell maintenance involved in nephron morphogenesis -relationship: regulates GO:1901145 ! mesenchymal cell apoptotic process involved in nephron morphogenesis +intersection_of: RO:0002211 GO:1901145 ! regulates (processual) mesenchymal cell apoptotic process involved in nephron morphogenesis +relationship: RO:0002211 GO:0072038 ! regulates (processual) mesenchymal stem cell maintenance involved in nephron morphogenesis +relationship: RO:0002211 GO:1901145 ! regulates (processual) mesenchymal cell apoptotic process involved in nephron morphogenesis created_by: mah creation_date: 2010-01-25T03:08:34Z @@ -106184,9 +105628,9 @@ is_a: GO:1902338 ! negative regulation of apoptotic process involved in morphoge is_a: GO:1904673 ! negative regulation of somatic stem cell population maintenance is_a: GO:2001054 ! negative regulation of mesenchymal cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1901145 ! mesenchymal cell apoptotic process involved in nephron morphogenesis -relationship: negatively_regulates GO:0072038 ! mesenchymal stem cell maintenance involved in nephron morphogenesis -relationship: negatively_regulates GO:1901145 ! mesenchymal cell apoptotic process involved in nephron morphogenesis +intersection_of: RO:0002212 GO:1901145 ! negatively regulates mesenchymal cell apoptotic process involved in nephron morphogenesis +relationship: RO:0002212 GO:0072038 ! negatively regulates mesenchymal stem cell maintenance involved in nephron morphogenesis +relationship: RO:0002212 GO:1901145 ! negatively regulates mesenchymal cell apoptotic process involved in nephron morphogenesis created_by: mah creation_date: 2010-01-25T03:09:30Z @@ -106202,9 +105646,9 @@ is_a: GO:1902339 ! positive regulation of apoptotic process involved in morphoge is_a: GO:1904674 ! positive regulation of somatic stem cell population maintenance is_a: GO:2001055 ! positive regulation of mesenchymal cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1901145 ! mesenchymal cell apoptotic process involved in nephron morphogenesis -relationship: positively_regulates GO:0072038 ! mesenchymal stem cell maintenance involved in nephron morphogenesis -relationship: positively_regulates GO:1901145 ! mesenchymal cell apoptotic process involved in nephron morphogenesis +intersection_of: RO:0002213 GO:1901145 ! positively regulates mesenchymal cell apoptotic process involved in nephron morphogenesis +relationship: RO:0002213 GO:0072038 ! positively regulates mesenchymal stem cell maintenance involved in nephron morphogenesis +relationship: RO:0002213 GO:1901145 ! positively regulates mesenchymal cell apoptotic process involved in nephron morphogenesis created_by: mah creation_date: 2010-01-25T03:10:32Z @@ -106215,9 +105659,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a collecting duct over time, from its formation to the mature structure. The collecting duct responds to vasopressin and aldosterone to regulate water, electrolyte and acid-base balance. It is the final common path through which urine flows before entering the ureter and then emptying into the bladder." [GOC:mtg_kidney_jan10] is_a: GO:0035295 ! tube development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001232 ! collecting duct of renal tubule +intersection_of: RO:0002296 UBERON:0001232 ! results in development of collecting duct of renal tubule relationship: part_of GO:0001822 ! kidney development -relationship: results_in_development_of UBERON:0001232 ! collecting duct of renal tubule +relationship: RO:0002296 UBERON:0001232 ! results in development of collecting duct of renal tubule created_by: mah creation_date: 2010-01-25T03:18:06Z @@ -106240,9 +105684,9 @@ namespace: biological_process def: "The process in which the comma-shaped body is generated and organized. The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron." [GOC:mtg_kidney_jan10] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004198 ! comma-shaped body +intersection_of: RO:0002298 UBERON:0004198 ! results in morphogenesis of comma-shaped body relationship: part_of GO:0072028 ! nephron morphogenesis -relationship: results_in_morphogenesis_of UBERON:0004198 ! comma-shaped body +relationship: RO:0002298 UBERON:0004198 ! results in morphogenesis of comma-shaped body created_by: mah creation_date: 2010-01-25T03:44:48Z @@ -106253,9 +105697,9 @@ namespace: biological_process def: "The process in which the S-shaped body is generated and organized. The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron." [GOC:mtg_kidney_jan10] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004199 ! S-shaped body +intersection_of: RO:0002298 UBERON:0004199 ! results in morphogenesis of S-shaped body relationship: part_of GO:0072028 ! nephron morphogenesis -relationship: results_in_morphogenesis_of UBERON:0004199 ! S-shaped body +relationship: RO:0002298 UBERON:0004199 ! results in morphogenesis of S-shaped body created_by: mah creation_date: 2010-01-25T03:45:19Z @@ -106266,9 +105710,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the juxtaglomerular apparatus over time, from its formation to the mature structure. The juxtaglomerular apparatus is an anatomical structure that lies adjacent to the glomerulus and regulates kidney function." [GOC:mtg_kidney_jan10] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002303 ! juxtaglomerular apparatus +intersection_of: RO:0002296 UBERON:0002303 ! results in development of juxtaglomerular apparatus relationship: part_of GO:0001822 ! kidney development -relationship: results_in_development_of UBERON:0002303 ! juxtaglomerular apparatus +relationship: RO:0002296 UBERON:0002303 ! results in development of juxtaglomerular apparatus created_by: mah creation_date: 2010-01-25T03:52:23Z @@ -106279,9 +105723,9 @@ namespace: biological_process def: "The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the juxtaglomerulus cells of the kidney as it progresses from its formation to the mature state." [GOC:mtg_kidney_jan10] is_a: GO:0061005 ! cell differentiation involved in kidney development intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000618 ! juxtaglomerular complex cell +intersection_of: RO:0002315 CL:1000618 ! results in acquisition of features of juxtaglomerular complex cell relationship: part_of GO:0072051 ! juxtaglomerular apparatus development -relationship: results_in_acquisition_of_features_of CL:1000618 ! juxtaglomerular complex cell +relationship: RO:0002315 CL:1000618 ! results in acquisition of features of juxtaglomerular complex cell created_by: mah creation_date: 2010-01-25T03:58:01Z @@ -106293,9 +105737,9 @@ def: "The process whose specific outcome is the progression of the renal inner m synonym: "inner renal medulla development" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001294 ! inner medulla of kidney +intersection_of: RO:0002296 UBERON:0001294 ! results in development of inner medulla of kidney relationship: part_of GO:0001822 ! kidney development -relationship: results_in_development_of UBERON:0001294 ! inner medulla of kidney +relationship: RO:0002296 UBERON:0001294 ! results in development of inner medulla of kidney created_by: mah creation_date: 2010-01-25T03:59:37Z @@ -106307,9 +105751,9 @@ def: "The process whose specific outcome is the progression of the renal outer m synonym: "outer renal medulla development" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001293 ! outer medulla of kidney +intersection_of: RO:0002296 UBERON:0001293 ! results in development of outer medulla of kidney relationship: part_of GO:0001822 ! kidney development -relationship: results_in_development_of UBERON:0001293 ! outer medulla of kidney +relationship: RO:0002296 UBERON:0001293 ! results in development of outer medulla of kidney created_by: mah creation_date: 2010-01-25T04:00:42Z @@ -106320,9 +105764,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the renal cortex over time, from its formation to the mature structure. The renal cortex is the outer region of the kidney." [GOC:mtg_kidney_jan10] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001225 ! cortex of kidney +intersection_of: RO:0002296 UBERON:0001225 ! results in development of cortex of kidney relationship: part_of GO:0001822 ! kidney development -relationship: results_in_development_of UBERON:0001225 ! cortex of kidney +relationship: RO:0002296 UBERON:0001225 ! results in development of cortex of kidney created_by: mah creation_date: 2010-01-25T04:01:12Z @@ -106337,9 +105781,9 @@ synonym: "renal medulla development" EXACT [GOC:mah] synonym: "renal pyramid development" EXACT [GOC:mah] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004200 ! kidney pyramid +intersection_of: RO:0002296 UBERON:0004200 ! results in development of kidney pyramid relationship: part_of GO:0001822 ! kidney development -relationship: results_in_development_of UBERON:0004200 ! kidney pyramid +relationship: RO:0002296 UBERON:0004200 ! results in development of kidney pyramid created_by: mah creation_date: 2010-01-25T04:01:36Z @@ -106350,9 +105794,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the inner stripe over time, from its formation to the mature structure. The inner stripe is a deep, centrally located portion of the renal outer medulla and is traversed by thin descending and thick ascending portions of the loops of Henle." [GOC:mtg_kidney_jan10] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004201 ! kidney outer medulla inner stripe +intersection_of: RO:0002296 UBERON:0004201 ! results in development of kidney outer medulla inner stripe relationship: part_of GO:0072054 ! renal outer medulla development -relationship: results_in_development_of UBERON:0004201 ! kidney outer medulla inner stripe +relationship: RO:0002296 UBERON:0004201 ! results in development of kidney outer medulla inner stripe created_by: mah creation_date: 2010-01-25T04:01:58Z @@ -106363,9 +105807,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the outer stripe over time, from its formation to the mature structure. The outer stripe is the region of the kidney outer medulla that lies just below the cortex. The proximal straight tubules (S3) characterize this region." [GOC:mtg_kidney_jan10] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004202 ! kidney outer medulla outer stripe +intersection_of: RO:0002296 UBERON:0004202 ! results in development of kidney outer medulla outer stripe relationship: part_of GO:0072054 ! renal outer medulla development -relationship: results_in_development_of UBERON:0004202 ! kidney outer medulla outer stripe +relationship: RO:0002296 UBERON:0004202 ! results in development of kidney outer medulla outer stripe created_by: mah creation_date: 2010-01-25T04:02:56Z @@ -106376,8 +105820,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the cortical collecting duct over time, from its formation to the mature structure. The cortical collecting duct is the portion of the collecting duct that resides in the renal cortex." [GOC:mtg_kidney_jan10] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004203 ! cortical collecting duct -relationship: results_in_development_of UBERON:0004203 ! cortical collecting duct +intersection_of: RO:0002296 UBERON:0004203 ! results in development of cortical collecting duct +relationship: RO:0002296 UBERON:0004203 ! results in development of cortical collecting duct created_by: mah creation_date: 2010-01-25T04:07:07Z @@ -106388,8 +105832,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the outer medullary collecting duct over time, from its formation to the mature structure. The outer medullary collecting duct is the portion of the collecting duct that lies in the renal outer medulla." [GOC:mtg_kidney_jan10] is_a: GO:0072044 ! collecting duct development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004204 ! outer medullary collecting duct -relationship: results_in_development_of UBERON:0004204 ! outer medullary collecting duct +intersection_of: RO:0002296 UBERON:0004204 ! results in development of outer medullary collecting duct +relationship: RO:0002296 UBERON:0004204 ! results in development of outer medullary collecting duct created_by: mah creation_date: 2010-01-25T04:08:18Z @@ -106400,8 +105844,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the inner medullary collecting duct over time, from its formation to the mature structure. The inner medullary collecting duct is the portion of the collecting duct that lies in the renal inner medulla." [GOC:mtg_kidney_jan10] is_a: GO:0072044 ! collecting duct development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004205 ! inner medullary collecting duct -relationship: results_in_development_of UBERON:0004205 ! inner medullary collecting duct +intersection_of: RO:0002296 UBERON:0004205 ! results in development of inner medullary collecting duct +relationship: RO:0002296 UBERON:0004205 ! results in development of inner medullary collecting duct created_by: mah creation_date: 2010-01-25T04:08:45Z @@ -106413,9 +105857,9 @@ def: "The process whose specific outcome is the progression of the short descend is_a: GO:0072009 ! nephron epithelium development is_a: GO:0072022 ! descending thin limb development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005099 ! short descending thin limb +intersection_of: RO:0002296 UBERON:0005099 ! results in development of short descending thin limb relationship: part_of GO:0072030 ! short nephron development -relationship: results_in_development_of UBERON:0005099 ! short descending thin limb +relationship: RO:0002296 UBERON:0005099 ! results in development of short descending thin limb created_by: mah creation_date: 2010-01-25T04:12:39Z @@ -106427,9 +105871,9 @@ def: "The process whose specific outcome is the progression of the long descendi is_a: GO:0072009 ! nephron epithelium development is_a: GO:0072022 ! descending thin limb development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005100 ! long descending thin limb +intersection_of: RO:0002296 UBERON:0005100 ! results in development of long descending thin limb relationship: part_of GO:0072029 ! long nephron development -relationship: results_in_development_of UBERON:0005100 ! long descending thin limb +relationship: RO:0002296 UBERON:0005100 ! results in development of long descending thin limb created_by: mah creation_date: 2010-01-25T04:13:17Z @@ -106440,9 +105884,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the long descending thin limb bend over time, from its formation to the mature structure. The long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment." [GOC:mtg_kidney_jan10] is_a: GO:0035295 ! tube development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004206 ! long descending thin limb bend +intersection_of: RO:0002296 UBERON:0004206 ! results in development of long descending thin limb bend relationship: part_of GO:0072064 ! long descending thin limb development -relationship: results_in_development_of UBERON:0004206 ! long descending thin limb bend +relationship: RO:0002296 UBERON:0004206 ! results in development of long descending thin limb bend created_by: mah creation_date: 2010-01-25T04:13:38Z @@ -106453,9 +105897,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the prebend segment over time, from its formation to the mature structure. The prebend segment is a part of the descending thin limb that lies before the bend and exhibits permeabilities characteristic of the ascending limb, especially negligible water permeability." [GOC:mtg_kidney_jan10] is_a: GO:0035295 ! tube development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004207 ! prebend segment of loop of Henle +intersection_of: RO:0002296 UBERON:0004207 ! results in development of prebend segment of loop of Henle relationship: part_of GO:0072022 ! descending thin limb development -relationship: results_in_development_of UBERON:0004207 ! prebend segment of loop of Henle +relationship: RO:0002296 UBERON:0004207 ! results in development of prebend segment of loop of Henle created_by: mah creation_date: 2010-01-25T04:14:02Z @@ -106466,9 +105910,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the early distal convoluted tubule over time, from its formation to the mature structure. The early distal convoluted tubule contains DCT cells and is vasopressin-insensitive." [GOC:mtg_kidney_jan10] is_a: GO:0072009 ! nephron epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005101 ! early distal convoluted tubule +intersection_of: RO:0002296 UBERON:0005101 ! results in development of early distal convoluted tubule relationship: part_of GO:0072025 ! distal convoluted tubule development -relationship: results_in_development_of UBERON:0005101 ! early distal convoluted tubule +relationship: RO:0002296 UBERON:0005101 ! results in development of early distal convoluted tubule created_by: mah creation_date: 2010-01-25T04:15:17Z @@ -106479,9 +105923,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the late distal convoluted tubule over time, from its formation to the mature structure. The late distal convoluted tubule contains DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive." [GOC:mtg_kidney_jan10] is_a: GO:0072009 ! nephron epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005102 ! late distal convoluted tubule +intersection_of: RO:0002296 UBERON:0005102 ! results in development of late distal convoluted tubule relationship: part_of GO:0072025 ! distal convoluted tubule development -relationship: results_in_development_of UBERON:0005102 ! late distal convoluted tubule +relationship: RO:0002296 UBERON:0005102 ! results in development of late distal convoluted tubule created_by: mah creation_date: 2010-01-25T04:15:50Z @@ -106494,8 +105938,8 @@ def: "The process whose specific outcome is the progression of the loop of Henle synonym: "intermediate tubule development" EXACT [] is_a: GO:0072080 ! nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001288 ! loop of Henle -relationship: results_in_development_of UBERON:0001288 ! loop of Henle +intersection_of: RO:0002296 UBERON:0001288 ! results in development of loop of Henle +relationship: RO:0002296 UBERON:0001288 ! results in development of loop of Henle created_by: mah creation_date: 2010-01-25T04:20:27Z @@ -106507,8 +105951,8 @@ def: "The process in which relatively unspecialized cells acquire specialized st synonym: "kidney interstitial cell differentiation" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0061005 ! cell differentiation involved in kidney development intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000692 ! kidney interstitial fibroblast -relationship: results_in_acquisition_of_features_of CL:1000692 ! kidney interstitial fibroblast +intersection_of: RO:0002315 CL:1000692 ! results in acquisition of features of kidney interstitial fibroblast +relationship: RO:0002315 CL:1000692 ! results in acquisition of features of kidney interstitial fibroblast created_by: mah creation_date: 2010-01-25T04:34:31Z @@ -106519,9 +105963,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of an epithelium in the kidney over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure." [GOC:mtg_kidney_jan10] is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004819 ! kidney epithelium +intersection_of: RO:0002296 UBERON:0004819 ! results in development of kidney epithelium relationship: part_of GO:0001822 ! kidney development -relationship: results_in_development_of UBERON:0004819 ! kidney epithelium +relationship: RO:0002296 UBERON:0004819 ! results in development of kidney epithelium created_by: mah creation_date: 2010-01-25T04:37:42Z @@ -106532,9 +105976,9 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of a kidney mesenchyme from an initial condition to its mature state. This process begins with the formation of kidney mesenchyme and ends with the mature structure. Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney." [GOC:mtg_kidney_jan10] is_a: GO:0060485 ! mesenchyme development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003918 ! kidney mesenchyme +intersection_of: RO:0002296 UBERON:0003918 ! results in development of kidney mesenchyme relationship: part_of GO:0001822 ! kidney development -relationship: results_in_development_of UBERON:0003918 ! kidney mesenchyme +relationship: RO:0002296 UBERON:0003918 ! results in development of kidney mesenchyme created_by: mah creation_date: 2010-01-25T04:39:04Z @@ -106545,9 +105989,9 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of a metanephric mesenchyme from an initial condition to its mature state. This process begins with the formation of metanephric mesenchyme and ends with the mature structure. Metanephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the metanephros." [GOC:mtg_kidney_jan10] is_a: GO:0072074 ! kidney mesenchyme development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003220 ! metanephric mesenchyme +intersection_of: RO:0002296 UBERON:0003220 ! results in development of metanephric mesenchyme relationship: part_of GO:0001656 ! metanephros development -relationship: results_in_development_of UBERON:0003220 ! metanephric mesenchyme +relationship: RO:0002296 UBERON:0003220 ! results in development of metanephric mesenchyme created_by: mah creation_date: 2010-01-25T04:40:11Z @@ -106558,9 +106002,9 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of a nephrogenic mesenchyme from an initial condition to its mature state. This process begins with the formation of nephrogenic mesenchyme and ends with the mature structure. Nephrogenic mesenchyme is the tissue made up of loosely connected mesenchymal cells in the nephron." [GOC:mtg_kidney_jan10] is_a: GO:0072074 ! kidney mesenchyme development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004208 ! nephrogenic mesenchyme +intersection_of: RO:0002296 UBERON:0004208 ! results in development of nephrogenic mesenchyme relationship: part_of GO:0072006 ! nephron development -relationship: results_in_development_of UBERON:0004208 ! nephrogenic mesenchyme +relationship: RO:0002296 UBERON:0004208 ! results in development of nephrogenic mesenchyme created_by: mah creation_date: 2010-01-25T04:40:44Z @@ -106571,11 +106015,11 @@ namespace: biological_process def: "The process in which the anatomical structures of the renal vesicle are generated and organized. The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells." [GOC:mtg_kidney_jan10] is_a: GO:0002009 ! morphogenesis of an epithelium intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004209 ! renal vesicle +intersection_of: RO:0002298 UBERON:0004209 ! results in morphogenesis of renal vesicle relationship: part_of GO:0072028 ! nephron morphogenesis relationship: part_of GO:0072087 ! renal vesicle development relationship: part_of GO:0072088 ! nephron epithelium morphogenesis -relationship: results_in_morphogenesis_of UBERON:0004209 ! renal vesicle +relationship: RO:0002298 UBERON:0004209 ! results in morphogenesis of renal vesicle created_by: mah creation_date: 2010-02-01T02:21:06Z @@ -106587,9 +106031,9 @@ def: "The process in which the anatomical structures of a nephron tubule are gen is_a: GO:0061333 ! renal tubule morphogenesis is_a: GO:0072088 ! nephron epithelium morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001231 ! nephron tubule +intersection_of: RO:0002298 UBERON:0001231 ! results in morphogenesis of nephron tubule relationship: part_of GO:0072080 ! nephron tubule development -relationship: results_in_morphogenesis_of UBERON:0001231 ! nephron tubule +relationship: RO:0002298 UBERON:0001231 ! results in morphogenesis of nephron tubule created_by: mah creation_date: 2010-02-01T02:25:14Z @@ -106600,9 +106044,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a nephron tubule from unspecified parts. A nephron tubule is an epithelial tube that is part of the nephron, the functional part of the kidney." [GOC:mtg_kidney_jan10] is_a: GO:0001838 ! embryonic epithelial tube formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001231 ! nephron tubule +intersection_of: RO:0002297 UBERON:0001231 ! results in formation of anatomical entity nephron tubule relationship: part_of GO:0072078 ! nephron tubule morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0001231 ! nephron tubule +relationship: RO:0002297 UBERON:0001231 ! results in formation of anatomical entity nephron tubule created_by: mah creation_date: 2010-02-01T02:29:26Z @@ -106614,8 +106058,8 @@ def: "The progression of a nephron tubule over time, from its initial formation is_a: GO:0061326 ! renal tubule development is_a: GO:0072009 ! nephron epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001231 ! nephron tubule -relationship: results_in_development_of UBERON:0001231 ! nephron tubule +intersection_of: RO:0002296 UBERON:0001231 ! results in development of nephron tubule +relationship: RO:0002296 UBERON:0001231 ! results in development of nephron tubule created_by: mah creation_date: 2010-02-01T02:32:12Z @@ -106626,9 +106070,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the renal vesicle over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells." [GOC:mtg_kidney_jan10] is_a: GO:0072073 ! kidney epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004209 ! renal vesicle +intersection_of: RO:0002296 UBERON:0004209 ! results in development of renal vesicle relationship: part_of GO:0072009 ! nephron epithelium development -relationship: results_in_development_of UBERON:0004209 ! renal vesicle +relationship: RO:0002296 UBERON:0004209 ! results in development of renal vesicle created_by: mah creation_date: 2010-02-08T01:18:31Z @@ -106639,10 +106083,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the nephron epithelium are generated and organized. The nephron epithelium is a tissue that covers the surface of a nephron." [GOC:mtg_kidney_jan10] is_a: GO:0002009 ! morphogenesis of an epithelium intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004211 ! nephron epithelium +intersection_of: RO:0002298 UBERON:0004211 ! results in morphogenesis of nephron epithelium relationship: part_of GO:0072009 ! nephron epithelium development relationship: part_of GO:0072028 ! nephron morphogenesis -relationship: results_in_morphogenesis_of UBERON:0004211 ! nephron epithelium +relationship: RO:0002298 UBERON:0004211 ! results in morphogenesis of nephron epithelium created_by: mah creation_date: 2010-02-08T01:19:06Z @@ -106653,9 +106097,9 @@ namespace: biological_process def: "The multiplication or reproduction of stem cells, resulting in the expansion of a stem cell population. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells." [GOC:mtg_kidney_jan10] is_a: GO:0008283 ! cell population proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000034 ! stem cell -relationship: acts_on_population_of CL:0000034 ! stem cell +intersection_of: RO:0012003 CL:0000034 ! acts on population of stem cell relationship: has_part GO:0017145 ! stem cell division +relationship: RO:0012003 CL:0000034 ! acts on population of stem cell created_by: mah creation_date: 2010-02-08T02:03:36Z @@ -106666,8 +106110,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of stem cell proliferation. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells." [GOC:mtg_kidney_jan10] is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072089 ! stem cell proliferation -relationship: regulates GO:0072089 ! stem cell proliferation +intersection_of: RO:0002211 GO:0072089 ! regulates (processual) stem cell proliferation +relationship: RO:0002211 GO:0072089 ! regulates (processual) stem cell proliferation created_by: mah creation_date: 2010-02-08T02:09:03Z @@ -106679,9 +106123,9 @@ def: "The developmental process pertaining to the initial formation of the metan synonym: "metanephros formation" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0072033 ! renal vesicle formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005147 ! metanephric renal vesicle +intersection_of: RO:0002297 UBERON:0005147 ! results in formation of anatomical entity metanephric renal vesicle relationship: part_of GO:0072283 ! metanephric renal vesicle morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005147 ! metanephric renal vesicle +relationship: RO:0002297 UBERON:0005147 ! results in formation of anatomical entity metanephric renal vesicle created_by: mah creation_date: 2010-02-10T01:17:11Z @@ -106723,9 +106167,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the glomerulus are generated and organized. The glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney." [GOC:mtg_kidney_jan10] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000074 ! renal glomerulus +intersection_of: RO:0002298 UBERON:0000074 ! results in morphogenesis of renal glomerulus relationship: part_of GO:0032835 ! glomerulus development -relationship: results_in_morphogenesis_of UBERON:0000074 ! renal glomerulus +relationship: RO:0002298 UBERON:0000074 ! results in morphogenesis of renal glomerulus created_by: mah creation_date: 2010-02-10T02:32:09Z @@ -106737,10 +106181,10 @@ def: "The process in which the anatomical structures of the glomerulus vasculatu is_a: GO:0048514 ! blood vessel morphogenesis is_a: GO:0061439 ! kidney vasculature morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004190 ! renal glomerulus vasculature +intersection_of: RO:0002298 UBERON:0004190 ! results in morphogenesis of renal glomerulus vasculature relationship: part_of GO:0072012 ! glomerulus vasculature development relationship: part_of GO:0072102 ! glomerulus morphogenesis -relationship: results_in_morphogenesis_of UBERON:0004190 ! renal glomerulus vasculature +relationship: RO:0002298 UBERON:0004190 ! results in morphogenesis of renal glomerulus vasculature created_by: mah creation_date: 2010-02-10T02:34:54Z @@ -106751,9 +106195,9 @@ namespace: biological_process def: "The process that gives rise to a glomerular capillary. This process pertains to the initial formation of a structure from unspecified parts." [GOC:mtg_kidney_jan10] is_a: GO:0001525 ! angiogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0004212 ! glomerular capillary +intersection_of: RO:0002297 UBERON:0004212 ! results in formation of anatomical entity glomerular capillary relationship: part_of GO:0072103 ! glomerulus vasculature morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0004212 ! glomerular capillary +relationship: RO:0002297 UBERON:0004212 ! results in formation of anatomical entity glomerular capillary created_by: mah creation_date: 2010-02-10T02:40:40Z @@ -106765,8 +106209,8 @@ def: "A wavelike sequence of involuntary muscular contraction and relaxation tha is_a: GO:0014849 ! ureter smooth muscle contraction is_a: GO:0030432 ! peristalsis intersection_of: GO:0030432 ! peristalsis -intersection_of: occurs_in UBERON:0000056 ! ureter -relationship: occurs_in UBERON:0000056 ! ureter +intersection_of: BFO:0000066 UBERON:0000056 ! occurs in ureter +relationship: BFO:0000066 UBERON:0000056 ! occurs in ureter created_by: mah creation_date: 2010-02-10T03:07:54Z @@ -106779,9 +106223,9 @@ is_a: GO:0061217 ! regulation of mesonephros development is_a: GO:1905276 ! regulation of epithelial tube formation is_a: GO:2000027 ! regulation of animal organ morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060676 ! ureteric bud formation -relationship: regulates GO:0001823 ! mesonephros development -relationship: regulates GO:0060676 ! ureteric bud formation +intersection_of: RO:0002211 GO:0060676 ! regulates (processual) ureteric bud formation +relationship: RO:0002211 GO:0001823 ! regulates (processual) mesonephros development +relationship: RO:0002211 GO:0060676 ! regulates (processual) ureteric bud formation created_by: mah creation_date: 2010-02-12T02:34:40Z @@ -106794,9 +106238,9 @@ is_a: GO:0072106 ! regulation of ureteric bud formation is_a: GO:0110110 ! positive regulation of animal organ morphogenesis is_a: GO:1905278 ! positive regulation of epithelial tube formation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060676 ! ureteric bud formation -relationship: positively_regulates GO:0009887 ! animal organ morphogenesis -relationship: positively_regulates GO:0060676 ! ureteric bud formation +intersection_of: RO:0002213 GO:0060676 ! positively regulates ureteric bud formation +relationship: RO:0002213 GO:0009887 ! positively regulates animal organ morphogenesis +relationship: RO:0002213 GO:0060676 ! positively regulates ureteric bud formation created_by: mah creation_date: 2010-02-12T02:37:28Z @@ -106809,9 +106253,9 @@ is_a: GO:0003339 ! regulation of mesenchymal to epithelial transition involved i is_a: GO:1905332 ! positive regulation of morphogenesis of an epithelium is_a: GO:2000698 ! positive regulation of epithelial cell differentiation involved in kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003337 ! mesenchymal to epithelial transition involved in metanephros morphogenesis -relationship: positively_regulates GO:0002009 ! morphogenesis of an epithelium -relationship: positively_regulates GO:0003337 ! mesenchymal to epithelial transition involved in metanephros morphogenesis +intersection_of: RO:0002213 GO:0003337 ! positively regulates mesenchymal to epithelial transition involved in metanephros morphogenesis +relationship: RO:0002213 GO:0002009 ! positively regulates morphogenesis of an epithelium +relationship: RO:0002213 GO:0003337 ! positively regulates mesenchymal to epithelial transition involved in metanephros morphogenesis created_by: mah creation_date: 2010-02-12T02:45:57Z @@ -106822,9 +106266,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the glomerular mesangium over time, from its formation to the mature structure. The glomerular mesangium is the thin membrane connective tissue composed of mesangial cells, which helps to support the capillary loops in a renal glomerulus." [GOC:mtg_kidney_jan10] is_a: GO:0061448 ! connective tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002320 ! glomerular mesangium +intersection_of: RO:0002296 UBERON:0002320 ! results in development of glomerular mesangium relationship: part_of GO:0072012 ! glomerulus vasculature development -relationship: results_in_development_of UBERON:0002320 ! glomerular mesangium +relationship: RO:0002296 UBERON:0002320 ! results in development of glomerular mesangium created_by: mah creation_date: 2010-02-22T10:35:24Z @@ -106849,8 +106293,8 @@ synonym: "glomerular visceral epithelial cell differentiation" EXACT [] is_a: GO:0061318 ! renal filtration cell differentiation is_a: GO:0072311 ! glomerular epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000653 ! podocyte -relationship: results_in_acquisition_of_features_of CL:0000653 ! podocyte +intersection_of: RO:0002315 CL:0000653 ! results in acquisition of features of podocyte +relationship: RO:0002315 CL:0000653 ! results in acquisition of features of podocyte property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23000" xsd:anyURI created_by: mah creation_date: 2010-02-22T10:52:11Z @@ -106863,8 +106307,8 @@ def: "The process whose specific outcome is the progression of the head kidney o is_a: GO:0048534 ! hematopoietic or lymphoid organ development is_a: GO:0048793 ! pronephros development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0007132 ! head kidney -relationship: results_in_development_of UBERON:0007132 ! head kidney +intersection_of: RO:0002296 UBERON:0007132 ! results in development of head kidney +relationship: RO:0002296 UBERON:0007132 ! results in development of head kidney created_by: mah creation_date: 2010-02-22T11:09:38Z @@ -106876,9 +106320,9 @@ def: "The process in which the anatomical structures of the pronephros are gener synonym: "pronephric kidney morphogenesis" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0060993 ! kidney morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002120 ! pronephros +intersection_of: RO:0002298 UBERON:0002120 ! results in morphogenesis of pronephros relationship: part_of GO:0048793 ! pronephros development -relationship: results_in_morphogenesis_of UBERON:0002120 ! pronephros +relationship: RO:0002298 UBERON:0002120 ! results in morphogenesis of pronephros created_by: mah creation_date: 2010-02-22T11:12:15Z @@ -106889,9 +106333,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the head kidney are generated and organized. The head kidney is a pronephros that consists of fused bilateral lobes located in the anterior part of the kidney." [GOC:mtg_kidney_jan10, ZFA:0000669] is_a: GO:0072114 ! pronephros morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0007132 ! head kidney +intersection_of: RO:0002298 UBERON:0007132 ! results in morphogenesis of head kidney relationship: part_of GO:0072113 ! head kidney development -relationship: results_in_morphogenesis_of UBERON:0007132 ! head kidney +relationship: RO:0002298 UBERON:0007132 ! results in morphogenesis of head kidney created_by: mah creation_date: 2010-02-22T11:13:37Z @@ -106904,9 +106348,9 @@ synonym: "pronephric kidney formation" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0048645 ! animal organ formation is_a: GO:0072003 ! kidney rudiment formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002120 ! pronephros +intersection_of: RO:0002297 UBERON:0002120 ! results in formation of anatomical entity pronephros relationship: part_of GO:0072114 ! pronephros morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002120 ! pronephros +relationship: RO:0002297 UBERON:0002120 ! results in formation of anatomical entity pronephros created_by: mah creation_date: 2010-02-22T11:16:26Z @@ -106917,9 +106361,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of the head kidney. The head kidney is a pronephros that consists of fused bilateral lobes located in the anterior part of the kidney." [GOC:mtg_kidney_jan10, ZFA:0000669] is_a: GO:0072116 ! pronephros formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0007132 ! head kidney +intersection_of: RO:0002297 UBERON:0007132 ! results in formation of anatomical entity head kidney relationship: part_of GO:0072115 ! head kidney morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0007132 ! head kidney +relationship: RO:0002297 UBERON:0007132 ! results in formation of anatomical entity head kidney created_by: mah creation_date: 2010-02-22T11:17:20Z @@ -106931,9 +106375,9 @@ def: "A developmental process, independent of morphogenetic (shape) change, that synonym: "pronephric kidney maturation" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0048799 ! animal organ maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0002120 ! pronephros +intersection_of: RO:0002299 UBERON:0002120 ! results in maturation of pronephros relationship: part_of GO:0048793 ! pronephros development -relationship: results_in_maturation_of UBERON:0002120 ! pronephros +relationship: RO:0002299 UBERON:0002120 ! results in maturation of pronephros created_by: mah creation_date: 2010-02-22T11:25:48Z @@ -106944,9 +106388,9 @@ namespace: biological_process def: "A developmental process, independent of morphogenetic (shape) change, that is required for the head kidney to attain its fully functional state. The head kidney is a pronephros that consists of fused bilateral lobes located in the anterior part of the kidney." [GOC:mtg_kidney_jan10, ZFA:0000669] is_a: GO:0072120 ! pronephros maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of UBERON:0007132 ! head kidney +intersection_of: RO:0002299 UBERON:0007132 ! results in maturation of head kidney relationship: part_of GO:0072113 ! head kidney development -relationship: results_in_maturation_of UBERON:0007132 ! head kidney +relationship: RO:0002299 UBERON:0007132 ! results in maturation of head kidney created_by: mah creation_date: 2010-02-22T11:28:08Z @@ -106957,9 +106401,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the renal capsule over time, from its formation to the mature structure. The renal capsule is the tough fibrous layer surrounding the kidney, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage. During development, it comprises a single layer of flattened cells that lie just above the cortical stroma and the condensed mesenchyme of the nephrogenic zone. It is in this region that the early stages of nephron induction and formation of new generations ureteric bud branches occur, as the kidney expands." [GOC:mtg_kidney_jan10] is_a: GO:0061448 ! connective tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002015 ! kidney capsule +intersection_of: RO:0002296 UBERON:0002015 ! results in development of kidney capsule relationship: part_of GO:0001822 ! kidney development -relationship: results_in_development_of UBERON:0002015 ! kidney capsule +relationship: RO:0002296 UBERON:0002015 ! results in development of kidney capsule created_by: mah creation_date: 2010-02-22T02:02:55Z @@ -106970,9 +106414,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the renal capsule are generated and organized. The renal capsule is the tough fibrous layer surrounding the kidney, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage. During development, it comprises a single layer of flattened cells that lie just above the cortical stroma and the condensed mesenchyme of the nephrogenic zone. It is in this region that the early stages of nephron induction and formation of new generations ureteric bud branches occur, as the kidney expands." [GOC:mtg_kidney_jan10] is_a: GO:0048729 ! tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002015 ! kidney capsule +intersection_of: RO:0002298 UBERON:0002015 ! results in morphogenesis of kidney capsule relationship: part_of GO:0072127 ! renal capsule development -relationship: results_in_morphogenesis_of UBERON:0002015 ! kidney capsule +relationship: RO:0002298 UBERON:0002015 ! results in morphogenesis of kidney capsule created_by: mah creation_date: 2010-02-22T02:06:19Z @@ -106983,9 +106427,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a renal capsule from unspecified parts. The renal capsule is the tough fibrous layer surrounding the kidney, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage. During development, it comprises a single layer of flattened cells that lie just above the cortical stroma and the condensed mesenchyme of the nephrogenic zone. It is in this region that the early stages of nephron induction and formation of new generations ureteric bud branches occur, as the kidney expands." [GOC:mtg_kidney_jan10] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0002015 ! kidney capsule +intersection_of: RO:0002297 UBERON:0002015 ! results in formation of anatomical entity kidney capsule relationship: part_of GO:0072128 ! renal capsule morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0002015 ! kidney capsule +relationship: RO:0002297 UBERON:0002015 ! results in formation of anatomical entity kidney capsule created_by: mah creation_date: 2010-02-22T02:08:14Z @@ -106996,9 +106440,9 @@ namespace: biological_process def: "The process in which the anatomical structures of a kidney mesenchymal tissue are generated and organized. Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney." [GOC:mtg_kidney_jan10] is_a: GO:0072132 ! mesenchyme morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003918 ! kidney mesenchyme +intersection_of: RO:0002298 UBERON:0003918 ! results in morphogenesis of kidney mesenchyme relationship: part_of GO:0072074 ! kidney mesenchyme development -relationship: results_in_morphogenesis_of UBERON:0003918 ! kidney mesenchyme +relationship: RO:0002298 UBERON:0003918 ! results in morphogenesis of kidney mesenchyme created_by: mah creation_date: 2010-02-22T02:16:43Z @@ -107009,10 +106453,10 @@ namespace: biological_process def: "The process in which the anatomical structures of a mesenchymal tissue are generated and organized. A mesenchymal tissue is made up of loosely packed stellate cells." [GOC:mtg_kidney_jan10] is_a: GO:0048729 ! tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003104 ! mesenchyme +intersection_of: RO:0002298 UBERON:0003104 ! results in morphogenesis of mesenchyme relationship: part_of GO:0009887 ! animal organ morphogenesis relationship: part_of GO:0060485 ! mesenchyme development -relationship: results_in_morphogenesis_of UBERON:0003104 ! mesenchyme +relationship: RO:0002298 UBERON:0003104 ! results in morphogenesis of mesenchyme created_by: mah creation_date: 2010-02-22T02:17:15Z @@ -107023,9 +106467,9 @@ namespace: biological_process def: "The process in which the anatomical structures of a metanephric mesenchymal tissue are generated and organized. Metanephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the metanephros." [GOC:mtg_kidney_jan10] is_a: GO:0072131 ! kidney mesenchyme morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003220 ! metanephric mesenchyme +intersection_of: RO:0002298 UBERON:0003220 ! results in morphogenesis of metanephric mesenchyme relationship: part_of GO:0072075 ! metanephric mesenchyme development -relationship: results_in_morphogenesis_of UBERON:0003220 ! metanephric mesenchyme +relationship: RO:0002298 UBERON:0003220 ! results in morphogenesis of metanephric mesenchyme created_by: mah creation_date: 2010-02-22T02:20:14Z @@ -107036,9 +106480,9 @@ namespace: biological_process def: "The process in which the anatomical structures of a nephrogenic mesenchymal tissue are generated and organized. Nephrogenic mesenchyme is the tissue made up of loosely connected mesenchymal cells in the nephron." [GOC:mtg_kidney_jan10] is_a: GO:0072131 ! kidney mesenchyme morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004208 ! nephrogenic mesenchyme +intersection_of: RO:0002298 UBERON:0004208 ! results in morphogenesis of nephrogenic mesenchyme relationship: part_of GO:0072076 ! nephrogenic mesenchyme development -relationship: results_in_morphogenesis_of UBERON:0004208 ! nephrogenic mesenchyme +relationship: RO:0002298 UBERON:0004208 ! results in morphogenesis of nephrogenic mesenchyme created_by: mah creation_date: 2010-02-22T02:21:16Z @@ -107073,9 +106517,9 @@ def: "The process whose specific outcome is the progression of a renal interstit synonym: "kidney interstitial cell development" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0048468 ! cell development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of CL:1000692 ! kidney interstitial fibroblast +intersection_of: RO:0002296 CL:1000692 ! results in development of kidney interstitial fibroblast relationship: part_of GO:0072071 ! kidney interstitial fibroblast differentiation -relationship: results_in_development_of CL:1000692 ! kidney interstitial fibroblast +relationship: RO:0002296 CL:1000692 ! results in development of kidney interstitial fibroblast created_by: mah creation_date: 2010-02-24T01:39:05Z @@ -107086,9 +106530,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a juxtaglomerulus cell over time, from its formation to the mature structure." [GOC:mtg_kidney_jan10] is_a: GO:0048468 ! cell development intersection_of: GO:0048468 ! cell development -intersection_of: results_in_development_of CL:1000618 ! juxtaglomerular complex cell +intersection_of: RO:0002296 CL:1000618 ! results in development of juxtaglomerular complex cell relationship: part_of GO:0072052 ! juxtaglomerulus cell differentiation -relationship: results_in_development_of CL:1000618 ! juxtaglomerular complex cell +relationship: RO:0002296 CL:1000618 ! results in development of juxtaglomerular complex cell created_by: mah creation_date: 2010-02-24T01:42:53Z @@ -107099,9 +106543,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a mesangial cell in the kidney over time, from its formation to the mature structure." [GOC:mtg_kidney_jan10] is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0000650 ! mesangial cell +intersection_of: RO:0002296 CL:0000650 ! results in development of mesangial cell relationship: part_of GO:0072007 ! mesangial cell differentiation -relationship: results_in_development_of CL:0000650 ! mesangial cell +relationship: RO:0002296 CL:0000650 ! results in development of mesangial cell created_by: mah creation_date: 2010-02-24T01:44:28Z @@ -107125,9 +106569,9 @@ namespace: biological_process def: "The process in which the anatomical structures of a distal tubule are generated and organized. The distal tubule is a nephron tubule that begins at the macula densa and extends to the connecting tubule." [GOC:mtg_kidney_jan10] is_a: GO:0072078 ! nephron tubule morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004135 ! distal tubule +intersection_of: RO:0002298 UBERON:0004135 ! results in morphogenesis of distal tubule relationship: part_of GO:0072017 ! distal tubule development -relationship: results_in_morphogenesis_of UBERON:0004135 ! distal tubule +relationship: RO:0002298 UBERON:0004135 ! results in morphogenesis of distal tubule created_by: mah creation_date: 2010-02-24T02:32:03Z @@ -107150,9 +106594,9 @@ namespace: biological_process def: "The process in which the anatomical structures of a proximal tubule are generated and organized. The proximal tubule is a nephron tubule that connects Bowman's capsule to the descending thin limb of the loop of Henle. It has a brush border epithelial morphology." [GOC:mtg_kidney_jan10] is_a: GO:0072078 ! nephron tubule morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004134 ! proximal tubule +intersection_of: RO:0002298 UBERON:0004134 ! results in morphogenesis of proximal tubule relationship: part_of GO:0072014 ! proximal tubule development -relationship: results_in_morphogenesis_of UBERON:0004134 ! proximal tubule +relationship: RO:0002298 UBERON:0004134 ! results in morphogenesis of proximal tubule created_by: mah creation_date: 2010-02-24T02:35:36Z @@ -107175,9 +106619,9 @@ namespace: biological_process def: "The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the nephron tubule as it progresses from its formation to the mature state." [GOC:mtg_kidney_jan10] is_a: GO:0035850 ! epithelial cell differentiation involved in kidney development intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000494 ! nephron tubule epithelial cell +intersection_of: RO:0002315 CL:1000494 ! results in acquisition of features of nephron tubule epithelial cell relationship: part_of GO:0072080 ! nephron tubule development -relationship: results_in_acquisition_of_features_of CL:1000494 ! nephron tubule epithelial cell +relationship: RO:0002315 CL:1000494 ! results in acquisition of features of nephron tubule epithelial cell created_by: mah creation_date: 2010-02-24T02:40:11Z @@ -107202,9 +106646,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of an epithelium in the mesonephros over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure." [GOC:mtg_kidney_jan10] is_a: GO:0072073 ! kidney epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005103 ! mesonephric epithelium +intersection_of: RO:0002296 UBERON:0005103 ! results in development of mesonephric epithelium relationship: part_of GO:0001823 ! mesonephros development -relationship: results_in_development_of UBERON:0005103 ! mesonephric epithelium +relationship: RO:0002296 UBERON:0005103 ! results in development of mesonephric epithelium created_by: mah creation_date: 2010-02-26T01:40:43Z @@ -107216,8 +106660,8 @@ def: "The progression of a mesonephric tubule over time, from its initial format is_a: GO:0035295 ! tube development is_a: GO:0072163 ! mesonephric epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000083 ! mesonephric tubule -relationship: results_in_development_of UBERON:0000083 ! mesonephric tubule +intersection_of: RO:0002296 UBERON:0000083 ! results in development of mesonephric tubule +relationship: RO:0002296 UBERON:0000083 ! results in development of mesonephric tubule created_by: mah creation_date: 2010-02-26T01:45:58Z @@ -107228,8 +106672,8 @@ namespace: biological_process def: "The progression of the anterior mesonephric tubule over time, from its initial formation to the mature structure. The anterior mesonephric tubule is an epithelial tube that is part of the mesonephros." [GOC:mtg_kidney_jan10] is_a: GO:0072164 ! mesonephric tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005104 ! anterior mesonephric tubule -relationship: results_in_development_of UBERON:0005104 ! anterior mesonephric tubule +intersection_of: RO:0002296 UBERON:0005104 ! results in development of anterior mesonephric tubule +relationship: RO:0002296 UBERON:0005104 ! results in development of anterior mesonephric tubule created_by: mah creation_date: 2010-02-26T01:47:26Z @@ -107240,8 +106684,8 @@ namespace: biological_process def: "The progression of the posterior mesonephric tubule over time, from its initial formation to the mature structure. The posterior mesonephric tubule is an epithelial tube that is part of the mesonephros." [GOC:mtg_kidney_jan10] is_a: GO:0072164 ! mesonephric tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005105 ! posterior mesonephric tubule -relationship: results_in_development_of UBERON:0005105 ! posterior mesonephric tubule +intersection_of: RO:0002296 UBERON:0005105 ! results in development of posterior mesonephric tubule +relationship: RO:0002296 UBERON:0005105 ! results in development of posterior mesonephric tubule created_by: mah creation_date: 2010-02-26T01:47:50Z @@ -107253,9 +106697,9 @@ def: "The progression of a metanephric tubule over time, from its initial format is_a: GO:0035295 ! tube development is_a: GO:0072207 ! metanephric epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005106 ! metanephric tubule +intersection_of: RO:0002296 UBERON:0005106 ! results in development of metanephric tubule relationship: part_of GO:0001656 ! metanephros development -relationship: results_in_development_of UBERON:0005106 ! metanephric tubule +relationship: RO:0002296 UBERON:0005106 ! results in development of metanephric tubule created_by: mah creation_date: 2010-02-26T01:58:18Z @@ -107266,9 +106710,9 @@ namespace: biological_process def: "The process in which the anatomical structures of a mesonephric tubule are generated and organized. A mesonephric tubule is an epithelial tube that is part of the mesonephros." [GOC:mtg_kidney_jan10] is_a: GO:0072078 ! nephron tubule morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000083 ! mesonephric tubule +intersection_of: RO:0002298 UBERON:0000083 ! results in morphogenesis of mesonephric tubule relationship: part_of GO:0072164 ! mesonephric tubule development -relationship: results_in_morphogenesis_of UBERON:0000083 ! mesonephric tubule +relationship: RO:0002298 UBERON:0000083 ! results in morphogenesis of mesonephric tubule created_by: mah creation_date: 2010-02-26T02:02:13Z @@ -107279,9 +106723,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a mesonephric tubule from unspecified parts. A mesonephric tubule is an epithelial tube that is part of the mesonephros." [GOC:mtg_kidney_jan10] is_a: GO:0072079 ! nephron tubule formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0000083 ! mesonephric tubule +intersection_of: RO:0002297 UBERON:0000083 ! results in formation of anatomical entity mesonephric tubule relationship: part_of GO:0072171 ! mesonephric tubule morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0000083 ! mesonephric tubule +relationship: RO:0002297 UBERON:0000083 ! results in formation of anatomical entity mesonephric tubule created_by: mah creation_date: 2010-02-26T02:02:37Z @@ -107292,9 +106736,9 @@ namespace: biological_process def: "The process in which the anatomical structures of a metanephric tubule are generated and organized from an epithelium. A metanephric tubule is an epithelial tube that is part of the metanephros." [GOC:mtg_kidney_jan10] is_a: GO:0060562 ! epithelial tube morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005106 ! metanephric tubule +intersection_of: RO:0002298 UBERON:0005106 ! results in morphogenesis of metanephric tubule relationship: part_of GO:0072170 ! metanephric tubule development -relationship: results_in_morphogenesis_of UBERON:0005106 ! metanephric tubule +relationship: RO:0002298 UBERON:0005106 ! results in morphogenesis of metanephric tubule created_by: mah creation_date: 2010-02-26T02:06:42Z @@ -107305,9 +106749,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a metanephric tubule." [GOC:mtg_kidney_jan10] is_a: GO:0072175 ! epithelial tube formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005106 ! metanephric tubule +intersection_of: RO:0002297 UBERON:0005106 ! results in formation of anatomical entity metanephric tubule relationship: part_of GO:0072173 ! metanephric tubule morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005106 ! metanephric tubule +relationship: RO:0002297 UBERON:0005106 ! results in formation of anatomical entity metanephric tubule created_by: mah creation_date: 2010-02-26T02:07:41Z @@ -107318,9 +106762,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of an epithelial tube." [GOC:mtg_kidney_jan10] is_a: GO:0035148 ! tube formation intersection_of: GO:0035148 ! tube formation -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003914 ! epithelial tube +intersection_of: RO:0002297 UBERON:0003914 ! results in formation of anatomical entity epithelial tube relationship: part_of GO:0060562 ! epithelial tube morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0003914 ! epithelial tube +relationship: RO:0002297 UBERON:0003914 ! results in formation of anatomical entity epithelial tube property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22302" xsd:anyURI created_by: mah creation_date: 2010-02-26T02:15:40Z @@ -107333,8 +106777,8 @@ def: "The process whose specific outcome is the progression of a nephric duct ov is_a: GO:0035295 ! tube development is_a: GO:0072073 ! kidney epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0009201 ! nephric duct -relationship: results_in_development_of UBERON:0009201 ! nephric duct +intersection_of: RO:0002296 UBERON:0009201 ! results in development of nephric duct +relationship: RO:0002296 UBERON:0009201 ! results in development of nephric duct created_by: mah creation_date: 2010-02-26T02:27:31Z @@ -107347,8 +106791,8 @@ synonym: "Wolffian duct development" EXACT [GOC:dph] is_a: GO:0072164 ! mesonephric tubule development is_a: GO:0072176 ! nephric duct development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003074 ! mesonephric duct -relationship: results_in_development_of UBERON:0003074 ! mesonephric duct +intersection_of: RO:0002296 UBERON:0003074 ! results in development of mesonephric duct +relationship: RO:0002296 UBERON:0003074 ! results in development of mesonephric duct created_by: mah creation_date: 2010-02-26T02:32:22Z @@ -107359,9 +106803,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the nephric duct are generated and organized. A nephric duct is a tube that drains a primitive kidney." [GOC:mtg_kidney_jan10] is_a: GO:0060562 ! epithelial tube morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0009201 ! nephric duct +intersection_of: RO:0002298 UBERON:0009201 ! results in morphogenesis of nephric duct relationship: part_of GO:0072176 ! nephric duct development -relationship: results_in_morphogenesis_of UBERON:0009201 ! nephric duct +relationship: RO:0002298 UBERON:0009201 ! results in morphogenesis of nephric duct created_by: mah creation_date: 2010-02-26T02:35:29Z @@ -107372,9 +106816,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a nephric duct. A nephric duct is a tube that drains a primitive kidney." [GOC:mtg_kidney_jan10] is_a: GO:0072175 ! epithelial tube formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0009201 ! nephric duct +intersection_of: RO:0002297 UBERON:0009201 ! results in formation of anatomical entity nephric duct relationship: part_of GO:0072178 ! nephric duct morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0009201 ! nephric duct +relationship: RO:0002297 UBERON:0009201 ! results in formation of anatomical entity nephric duct created_by: mah creation_date: 2010-02-26T02:35:55Z @@ -107387,9 +106831,9 @@ synonym: "Wolffian duct morphogenesis" RELATED [GOC:dph] is_a: GO:0072171 ! mesonephric tubule morphogenesis is_a: GO:0072178 ! nephric duct morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003074 ! mesonephric duct +intersection_of: RO:0002298 UBERON:0003074 ! results in morphogenesis of mesonephric duct relationship: part_of GO:0072177 ! mesonephric duct development -relationship: results_in_morphogenesis_of UBERON:0003074 ! mesonephric duct +relationship: RO:0002298 UBERON:0003074 ! results in morphogenesis of mesonephric duct created_by: mah creation_date: 2010-02-26T02:37:13Z @@ -107403,8 +106847,8 @@ is_a: GO:0072172 ! mesonephric tubule formation is_a: GO:0072179 ! nephric duct formation is_a: GO:0072180 ! mesonephric duct morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003074 ! mesonephric duct -relationship: results_in_formation_of_anatomical_entity UBERON:0003074 ! mesonephric duct +intersection_of: RO:0002297 UBERON:0003074 ! results in formation of anatomical entity mesonephric duct +relationship: RO:0002297 UBERON:0003074 ! results in formation of anatomical entity mesonephric duct created_by: mah creation_date: 2010-02-26T02:38:03Z @@ -107415,8 +106859,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of nephron tubule epithelial cell differentiation." [GOC:mtg_kidney_jan10] is_a: GO:2000696 ! regulation of epithelial cell differentiation involved in kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072160 ! nephron tubule epithelial cell differentiation -relationship: regulates GO:0072160 ! nephron tubule epithelial cell differentiation +intersection_of: RO:0002211 GO:0072160 ! regulates (processual) nephron tubule epithelial cell differentiation +relationship: RO:0002211 GO:0072160 ! regulates (processual) nephron tubule epithelial cell differentiation created_by: mah creation_date: 2010-02-26T02:45:09Z @@ -107429,8 +106873,8 @@ is_a: GO:0072182 ! regulation of nephron tubule epithelial cell differentiation is_a: GO:0090185 ! negative regulation of kidney development is_a: GO:2000697 ! negative regulation of epithelial cell differentiation involved in kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0072160 ! nephron tubule epithelial cell differentiation -relationship: negatively_regulates GO:0072160 ! nephron tubule epithelial cell differentiation +intersection_of: RO:0002212 GO:0072160 ! negatively regulates nephron tubule epithelial cell differentiation +relationship: RO:0002212 GO:0072160 ! negatively regulates nephron tubule epithelial cell differentiation created_by: mah creation_date: 2010-02-26T02:47:25Z @@ -107441,8 +106885,8 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of the metanephric cap from an initial condition to its mature state. The metanephric cap is formed by the condensation of metanephric mesenchymal cells surrounding the ureteric bud tip." [GOC:mtg_kidney_jan10] is_a: GO:0072075 ! metanephric mesenchyme development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005107 ! metanephric cap -relationship: results_in_development_of UBERON:0005107 ! metanephric cap +intersection_of: RO:0002296 UBERON:0005107 ! results in development of metanephric cap +relationship: RO:0002296 UBERON:0005107 ! results in development of metanephric cap created_by: mah creation_date: 2010-03-01T01:20:22Z @@ -107453,9 +106897,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the metanephric cap are generated and organized. The metanephric cap is formed by the condensation of metanephric mesenchymal cells surrounding the ureteric bud tip." [GOC:mtg_kidney_jan10] is_a: GO:0072133 ! metanephric mesenchyme morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005107 ! metanephric cap +intersection_of: RO:0002298 UBERON:0005107 ! results in morphogenesis of metanephric cap relationship: part_of GO:0072185 ! metanephric cap development -relationship: results_in_morphogenesis_of UBERON:0005107 ! metanephric cap +relationship: RO:0002298 UBERON:0005107 ! results in morphogenesis of metanephric cap created_by: mah creation_date: 2010-03-01T01:22:51Z @@ -107466,9 +106910,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a metanephric cap from unspecified parts. The metanephric cap is formed by the condensation of metanephric mesenchymal cells surrounding the ureteric bud tip." [GOC:mtg_kidney_jan10] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005107 ! metanephric cap +intersection_of: RO:0002297 UBERON:0005107 ! results in formation of anatomical entity metanephric cap relationship: part_of GO:0072186 ! metanephric cap morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005107 ! metanephric cap +relationship: RO:0002297 UBERON:0005107 ! results in formation of anatomical entity metanephric cap created_by: mah creation_date: 2010-03-01T01:26:53Z @@ -107480,9 +106924,9 @@ def: "The process whose specific outcome is the progression of the ureter over t is_a: GO:0035295 ! tube development is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000056 ! ureter +intersection_of: RO:0002296 UBERON:0000056 ! results in development of ureter relationship: part_of GO:0072001 ! renal system development -relationship: results_in_development_of UBERON:0000056 ! ureter +relationship: RO:0002296 UBERON:0000056 ! results in development of ureter created_by: mah creation_date: 2010-03-01T01:44:14Z @@ -107494,9 +106938,9 @@ def: "The process whose specific outcome is the progression of the urothelium of synonym: "ureter epithelium development" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001254 ! urothelium of ureter +intersection_of: RO:0002296 UBERON:0001254 ! results in development of urothelium of ureter relationship: part_of GO:0072189 ! ureter development -relationship: results_in_development_of UBERON:0001254 ! urothelium of ureter +relationship: RO:0002296 UBERON:0001254 ! results in development of urothelium of ureter created_by: mah creation_date: 2010-03-01T01:46:31Z @@ -107507,9 +106951,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of smooth muscle in the ureter over time, from its formation to the mature structure." [GOC:mtg_kidney_jan10] is_a: GO:0048745 ! smooth muscle tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0009919 ! ureter smooth muscle +intersection_of: RO:0002296 UBERON:0009919 ! results in development of ureter smooth muscle relationship: part_of GO:0072189 ! ureter development -relationship: results_in_development_of UBERON:0009919 ! ureter smooth muscle +relationship: RO:0002296 UBERON:0009919 ! results in development of ureter smooth muscle created_by: mah creation_date: 2010-03-01T01:48:53Z @@ -107520,9 +106964,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a smooth muscle cell in the ureter." [GOC:mtg_kidney_jan10] is_a: GO:0051145 ! smooth muscle cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000979 ! ureter smooth muscle cell +intersection_of: RO:0002315 CL:1000979 ! results in acquisition of features of ureter smooth muscle cell relationship: part_of GO:0072191 ! ureter smooth muscle development -relationship: results_in_acquisition_of_features_of CL:1000979 ! ureter smooth muscle cell +relationship: RO:0002315 CL:1000979 ! results in acquisition of features of ureter smooth muscle cell created_by: mah creation_date: 2010-03-01T01:55:01Z @@ -107544,9 +106988,9 @@ def: "The process in which the anatomical structures of the ureter are generated is_a: GO:0009887 ! animal organ morphogenesis is_a: GO:0035239 ! tube morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000056 ! ureter +intersection_of: RO:0002298 UBERON:0000056 ! results in morphogenesis of ureter relationship: part_of GO:0072189 ! ureter development -relationship: results_in_morphogenesis_of UBERON:0000056 ! ureter +relationship: RO:0002298 UBERON:0000056 ! results in morphogenesis of ureter created_by: mah creation_date: 2010-03-01T02:24:55Z @@ -107573,8 +107017,8 @@ synonym: "regulation of ureter mesenchymal cell proliferation" RELATED [GOC:mtg_ synonym: "regulation of ureteral mesenchymal cell proliferation" RELATED [GOC:mtg_kidney_jan10] is_a: GO:0010464 ! regulation of mesenchymal cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072198 ! mesenchymal cell proliferation involved in ureter development -relationship: regulates GO:0072198 ! mesenchymal cell proliferation involved in ureter development +intersection_of: RO:0002211 GO:0072198 ! regulates (processual) mesenchymal cell proliferation involved in ureter development +relationship: RO:0002211 GO:0072198 ! regulates (processual) mesenchymal cell proliferation involved in ureter development created_by: mah creation_date: 2010-03-01T03:38:13Z @@ -107590,10 +107034,10 @@ is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:0072199 ! regulation of mesenchymal cell proliferation involved in ureter development is_a: GO:0072201 ! negative regulation of mesenchymal cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0072198 ! mesenchymal cell proliferation involved in ureter development -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0032502 ! developmental process -relationship: negatively_regulates GO:0072198 ! mesenchymal cell proliferation involved in ureter development +intersection_of: RO:0002212 GO:0072198 ! negatively regulates mesenchymal cell proliferation involved in ureter development +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0032502 ! negatively regulates developmental process +relationship: RO:0002212 GO:0072198 ! negatively regulates mesenchymal cell proliferation involved in ureter development created_by: mah creation_date: 2010-03-01T03:42:31Z @@ -107605,8 +107049,8 @@ def: "Any process that decreases the frequency, rate or extent of mesenchymal ce is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:0010464 ! regulation of mesenchymal cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0010463 ! mesenchymal cell proliferation -relationship: negatively_regulates GO:0010463 ! mesenchymal cell proliferation +intersection_of: RO:0002212 GO:0010463 ! negatively regulates mesenchymal cell proliferation +relationship: RO:0002212 GO:0010463 ! negatively regulates mesenchymal cell proliferation created_by: mah creation_date: 2010-03-01T03:43:29Z @@ -107654,9 +107098,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a collecting duct in the metanephros over time, from its formation to the mature structure. The collecting duct responds to vasopressin and aldosterone to regulate water, electrolyte and acid-base balance. The collecting duct is the final common path through which urine flows before entering the ureter and then emptying into the bladder." [GOC:mtg_kidney_jan10] is_a: GO:0072044 ! collecting duct development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004737 ! metanephric collecting duct +intersection_of: RO:0002296 UBERON:0004737 ! results in development of metanephric collecting duct relationship: part_of GO:0001656 ! metanephros development -relationship: results_in_development_of UBERON:0004737 ! metanephric collecting duct +relationship: RO:0002296 UBERON:0004737 ! results in development of metanephric collecting duct created_by: mah creation_date: 2010-03-18T11:15:37Z @@ -107667,9 +107111,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the juxtaglomerular apparatus in the metanephros over time, from its formation to the mature structure. The juxtaglomerular apparatus is an anatomical structure which consists of juxtaglomerular cells, extraglomerular mesangial cells and the macula densa. The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate." [GOC:mtg_kidney_jan10] is_a: GO:0072051 ! juxtaglomerular apparatus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004738 ! metanephric juxtaglomerular apparatus +intersection_of: RO:0002296 UBERON:0004738 ! results in development of metanephric juxtaglomerular apparatus relationship: part_of GO:0001656 ! metanephros development -relationship: results_in_development_of UBERON:0004738 ! metanephric juxtaglomerular apparatus +relationship: RO:0002296 UBERON:0004738 ! results in development of metanephric juxtaglomerular apparatus created_by: mah creation_date: 2010-03-18T11:17:47Z @@ -107680,9 +107124,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of an epithelium in the metanephros over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure." [GOC:mtg_kidney_jan10] is_a: GO:0072073 ! kidney epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005108 ! metanephric epithelium +intersection_of: RO:0002296 UBERON:0005108 ! results in development of metanephric epithelium relationship: part_of GO:0001656 ! metanephros development -relationship: results_in_development_of UBERON:0005108 ! metanephric epithelium +relationship: RO:0002296 UBERON:0005108 ! results in development of metanephric epithelium created_by: mah creation_date: 2010-03-18T11:50:37Z @@ -107693,9 +107137,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of smooth muscle in the metanephros over time, from its formation to the mature structure." [GOC:mtg_kidney_jan10] is_a: GO:0072194 ! kidney smooth muscle tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005109 ! metanephric smooth muscle tissue +intersection_of: RO:0002296 UBERON:0005109 ! results in development of metanephric smooth muscle tissue relationship: part_of GO:0001656 ! metanephros development -relationship: results_in_development_of UBERON:0005109 ! metanephric smooth muscle tissue +relationship: RO:0002296 UBERON:0005109 ! results in development of metanephric smooth muscle tissue created_by: mah creation_date: 2010-03-18T11:51:59Z @@ -107706,9 +107150,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a nephron in the metanephros over time, from its formation to the mature structure. A nephron is the functional unit of the kidney." [GOC:mtg_kidney_jan10] is_a: GO:0072006 ! nephron development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005110 ! metanephric nephron +intersection_of: RO:0002296 UBERON:0005110 ! results in development of metanephric nephron relationship: part_of GO:0001656 ! metanephros development -relationship: results_in_development_of UBERON:0005110 ! metanephric nephron +relationship: RO:0002296 UBERON:0005110 ! results in development of metanephric nephron created_by: mah creation_date: 2010-03-18T12:52:57Z @@ -107723,9 +107167,9 @@ synonym: "metanephric renal medulla development" EXACT [GOC:mah] synonym: "metanephric renal pyramid development" EXACT [GOC:mah] is_a: GO:0072056 ! pyramid development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005111 ! metanephric pyramid +intersection_of: RO:0002296 UBERON:0005111 ! results in development of metanephric pyramid relationship: part_of GO:0001656 ! metanephros development -relationship: results_in_development_of UBERON:0005111 ! metanephric pyramid +relationship: RO:0002296 UBERON:0005111 ! results in development of metanephric pyramid created_by: mah creation_date: 2010-03-18T01:04:51Z @@ -107736,9 +107180,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the metanephric capsule over time, from its formation to the mature structure. The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage." [GOC:mtg_kidney_jan10] is_a: GO:0072127 ! renal capsule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005137 ! metanephric capsule +intersection_of: RO:0002296 UBERON:0005137 ! results in development of metanephric capsule relationship: part_of GO:0001656 ! metanephros development -relationship: results_in_development_of UBERON:0005137 ! metanephric capsule +relationship: RO:0002296 UBERON:0005137 ! results in development of metanephric capsule created_by: mah creation_date: 2010-03-18T01:25:19Z @@ -107750,9 +107194,9 @@ def: "The process whose specific outcome is the progression of the metanephric c is_a: GO:0060485 ! mesenchyme development is_a: GO:0072055 ! renal cortex development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005113 ! metanephric cortex mesenchyme +intersection_of: RO:0002296 UBERON:0005113 ! results in development of metanephric cortex mesenchyme relationship: part_of GO:0001656 ! metanephros development -relationship: results_in_development_of UBERON:0005113 ! metanephric cortex mesenchyme +relationship: RO:0002296 UBERON:0005113 ! results in development of metanephric cortex mesenchyme created_by: mah creation_date: 2010-03-18T01:29:49Z @@ -107763,8 +107207,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency or extent of metanephros development. Metanephros development is the process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine." [GOC:mtg_kidney_jan10] is_a: GO:0090183 ! regulation of kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001656 ! metanephros development -relationship: regulates GO:0001656 ! metanephros development +intersection_of: RO:0002211 GO:0001656 ! regulates (processual) metanephros development +relationship: RO:0002211 GO:0001656 ! regulates (processual) metanephros development [Term] id: GO:0072216 @@ -107774,8 +107218,8 @@ def: "Any process that increases the rate, frequency or extent of metanephros de is_a: GO:0072215 ! regulation of metanephros development is_a: GO:0090184 ! positive regulation of kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001656 ! metanephros development -relationship: positively_regulates GO:0001656 ! metanephros development +intersection_of: RO:0002213 GO:0001656 ! positively regulates metanephros development +relationship: RO:0002213 GO:0001656 ! positively regulates metanephros development created_by: mah creation_date: 2010-03-18T01:40:12Z @@ -107787,8 +107231,8 @@ def: "Any process that decreases the rate, frequency or extent of metanephros de is_a: GO:0072215 ! regulation of metanephros development is_a: GO:0090185 ! negative regulation of kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001656 ! metanephros development -relationship: negatively_regulates GO:0001656 ! metanephros development +intersection_of: RO:0002212 GO:0001656 ! negatively regulates metanephros development +relationship: RO:0002212 GO:0001656 ! negatively regulates metanephros development created_by: mah creation_date: 2010-03-18T01:45:48Z @@ -107800,9 +107244,9 @@ def: "The process whose specific outcome is the progression of a metanephric asc is_a: GO:0072021 ! ascending thin limb development is_a: GO:0072234 ! metanephric nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005114 ! metanephric ascending thin limb +intersection_of: RO:0002296 UBERON:0005114 ! results in development of metanephric ascending thin limb relationship: part_of GO:0072236 ! metanephric loop of Henle development -relationship: results_in_development_of UBERON:0005114 ! metanephric ascending thin limb +relationship: RO:0002296 UBERON:0005114 ! results in development of metanephric ascending thin limb created_by: mah creation_date: 2010-03-18T03:34:42Z @@ -107813,8 +107257,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the metanephric cortical collecting duct over time, from its formation to the mature structure. The metanephric cortical collecting duct is the portion of the metanephric collecting duct that resides in the renal cortex." [GOC:mtg_kidney_jan10] is_a: GO:0072059 ! cortical collecting duct development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005115 ! metanephric cortical collecting duct -relationship: results_in_development_of UBERON:0005115 ! metanephric cortical collecting duct +intersection_of: RO:0002296 UBERON:0005115 ! results in development of metanephric cortical collecting duct +relationship: RO:0002296 UBERON:0005115 ! results in development of metanephric cortical collecting duct created_by: mah creation_date: 2010-03-18T03:34:52Z @@ -107825,9 +107269,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the metanephric descending thin limb over time, from its formation to the mature structure. The metanephric descending thin limb is a part of the metanephric loop of Henle situated just after the proximal straight tubule (S3). It extends to the tip of the metanephric loop of Henle." [GOC:mtg_kidney_jan10] is_a: GO:0072022 ! descending thin limb development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005116 ! metanephric descending thin limb +intersection_of: RO:0002296 UBERON:0005116 ! results in development of metanephric descending thin limb relationship: part_of GO:0072236 ! metanephric loop of Henle development -relationship: results_in_development_of UBERON:0005116 ! metanephric descending thin limb +relationship: RO:0002296 UBERON:0005116 ! results in development of metanephric descending thin limb created_by: mah creation_date: 2010-03-18T03:35:05Z @@ -107839,9 +107283,9 @@ def: "The process whose specific outcome is the progression of the metanephric d is_a: GO:0072025 ! distal convoluted tubule development is_a: GO:0072234 ! metanephric nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005117 ! metanephric distal convoluted tubule +intersection_of: RO:0002296 UBERON:0005117 ! results in development of metanephric distal convoluted tubule relationship: part_of GO:0072235 ! metanephric distal tubule development -relationship: results_in_development_of UBERON:0005117 ! metanephric distal convoluted tubule +relationship: RO:0002296 UBERON:0005117 ! results in development of metanephric distal convoluted tubule created_by: mah creation_date: 2010-03-18T03:35:27Z @@ -107853,9 +107297,9 @@ def: "The process whose specific outcome is the progression of the metanephric e is_a: GO:0072067 ! early distal convoluted tubule development is_a: GO:0072243 ! metanephric nephron epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005118 ! metanephric early distal convoluted tubule +intersection_of: RO:0002296 UBERON:0005118 ! results in development of metanephric early distal convoluted tubule relationship: part_of GO:0072221 ! metanephric distal convoluted tubule development -relationship: results_in_development_of UBERON:0005118 ! metanephric early distal convoluted tubule +relationship: RO:0002296 UBERON:0005118 ! results in development of metanephric early distal convoluted tubule created_by: mah creation_date: 2010-03-18T03:35:46Z @@ -107866,9 +107310,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the metanephric glomerular mesangium over time, from its formation to the mature structure. The metanephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the metanephros, which helps to support the capillary loops in a renal glomerulus." [GOC:mtg_kidney_jan10] is_a: GO:0072109 ! glomerular mesangium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005119 ! metanephric glomerular mesangium +intersection_of: RO:0002296 UBERON:0005119 ! results in development of metanephric glomerular mesangium relationship: part_of GO:0072239 ! metanephric glomerulus vasculature development -relationship: results_in_development_of UBERON:0005119 ! metanephric glomerular mesangium +relationship: RO:0002296 UBERON:0005119 ! results in development of metanephric glomerular mesangium created_by: mah creation_date: 2010-03-18T03:35:56Z @@ -107880,9 +107324,9 @@ def: "The progression of the metanephric glomerulus over time from its initial f synonym: "metanephric glomerular development" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0032835 ! glomerulus development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004736 ! metanephric glomerulus +intersection_of: RO:0002296 UBERON:0004736 ! results in development of metanephric glomerulus relationship: part_of GO:0072210 ! metanephric nephron development -relationship: results_in_development_of UBERON:0004736 ! metanephric glomerulus +relationship: RO:0002296 UBERON:0004736 ! results in development of metanephric glomerulus created_by: mah creation_date: 2010-03-18T03:36:20Z @@ -107894,9 +107338,9 @@ def: "The process whose specific outcome is the progression of the metanephric l is_a: GO:0072068 ! late distal convoluted tubule development is_a: GO:0072243 ! metanephric nephron epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005120 ! metanephric late distal convoluted tubule +intersection_of: RO:0002296 UBERON:0005120 ! results in development of metanephric late distal convoluted tubule relationship: part_of GO:0072221 ! metanephric distal convoluted tubule development -relationship: results_in_development_of UBERON:0005120 ! metanephric late distal convoluted tubule +relationship: RO:0002296 UBERON:0005120 ! results in development of metanephric late distal convoluted tubule created_by: mah creation_date: 2010-03-18T03:37:04Z @@ -107907,10 +107351,10 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the metanephric long descending thin limb bend over time, from its formation to the mature structure. The metanephric long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment in the metanephros." [GOC:mtg_kidney_jan10] is_a: GO:0072065 ! long descending thin limb bend development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005121 ! metanephric long descending thin limb bend +intersection_of: RO:0002296 UBERON:0005121 ! results in development of metanephric long descending thin limb bend relationship: part_of GO:0072220 ! metanephric descending thin limb development relationship: part_of GO:0072269 ! metanephric long descending thin limb development -relationship: results_in_development_of UBERON:0005121 ! metanephric long descending thin limb bend +relationship: RO:0002296 UBERON:0005121 ! results in development of metanephric long descending thin limb bend created_by: mah creation_date: 2010-03-18T03:37:16Z @@ -107922,9 +107366,9 @@ def: "The process whose specific outcome is the progression of the metanephric m is_a: GO:0072024 ! macula densa development is_a: GO:0072243 ! metanephric nephron epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005122 ! metanephric macula densa +intersection_of: RO:0002296 UBERON:0005122 ! results in development of metanephric macula densa relationship: part_of GO:0072206 ! metanephric juxtaglomerular apparatus development -relationship: results_in_development_of UBERON:0005122 ! metanephric macula densa +relationship: RO:0002296 UBERON:0005122 ! results in development of metanephric macula densa created_by: mah creation_date: 2010-03-18T03:37:26Z @@ -107935,9 +107379,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the metanephric prebend segment over time, from its formation to the mature structure. The metanephric prebend segment is a part of the metanephric descending thin limb that lies before the bend and exhibits permeabilities characteristic of the ascending limb, especially negligible water permeability." [GOC:mtg_kidney_jan10] is_a: GO:0072066 ! prebend segment development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005123 ! metanephric prebend segment +intersection_of: RO:0002296 UBERON:0005123 ! results in development of metanephric prebend segment relationship: part_of GO:0072220 ! metanephric descending thin limb development -relationship: results_in_development_of UBERON:0005123 ! metanephric prebend segment +relationship: RO:0002296 UBERON:0005123 ! results in development of metanephric prebend segment created_by: mah creation_date: 2010-03-18T03:37:46Z @@ -107949,9 +107393,9 @@ def: "The process whose specific outcome is the progression of the metanephric p is_a: GO:0072019 ! proximal convoluted tubule development is_a: GO:0072234 ! metanephric nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005124 ! metanephric proximal convoluted tubule +intersection_of: RO:0002296 UBERON:0005124 ! results in development of metanephric proximal convoluted tubule relationship: part_of GO:0072237 ! metanephric proximal tubule development -relationship: results_in_development_of UBERON:0005124 ! metanephric proximal convoluted tubule +relationship: RO:0002296 UBERON:0005124 ! results in development of metanephric proximal convoluted tubule created_by: mah creation_date: 2010-03-18T03:37:56Z @@ -107964,9 +107408,9 @@ synonym: "metanephric S3 development" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0072020 ! proximal straight tubule development is_a: GO:0072234 ! metanephric nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005125 ! metanephric proximal straight tubule +intersection_of: RO:0002296 UBERON:0005125 ! results in development of metanephric proximal straight tubule relationship: part_of GO:0072237 ! metanephric proximal tubule development -relationship: results_in_development_of UBERON:0005125 ! metanephric proximal straight tubule +relationship: RO:0002296 UBERON:0005125 ! results in development of metanephric proximal straight tubule created_by: mah creation_date: 2010-03-18T03:38:53Z @@ -107978,9 +107422,9 @@ def: "The process whose specific outcome is the progression of the S1 portion of synonym: "metanephric S1 development" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0072031 ! proximal convoluted tubule segment 1 development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005126 ! metanephric S1 +intersection_of: RO:0002296 UBERON:0005126 ! results in development of metanephric S1 relationship: part_of GO:0072229 ! metanephric proximal convoluted tubule development -relationship: results_in_development_of UBERON:0005126 ! metanephric S1 +relationship: RO:0002296 UBERON:0005126 ! results in development of metanephric S1 created_by: mah creation_date: 2010-03-18T03:39:10Z @@ -107993,9 +107437,9 @@ synonym: "metanephric TAL development" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0072023 ! thick ascending limb development is_a: GO:0072234 ! metanephric nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005127 ! metanephric thick ascending limb +intersection_of: RO:0002296 UBERON:0005127 ! results in development of metanephric thick ascending limb relationship: part_of GO:0072235 ! metanephric distal tubule development -relationship: results_in_development_of UBERON:0005127 ! metanephric thick ascending limb +relationship: RO:0002296 UBERON:0005127 ! results in development of metanephric thick ascending limb created_by: mah creation_date: 2010-03-18T03:39:36Z @@ -108008,8 +107452,8 @@ is_a: GO:0072080 ! nephron tubule development is_a: GO:0072170 ! metanephric tubule development is_a: GO:0072243 ! metanephric nephron epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005146 ! metanephric nephron tubule -relationship: results_in_development_of UBERON:0005146 ! metanephric nephron tubule +intersection_of: RO:0002296 UBERON:0005146 ! results in development of metanephric nephron tubule +relationship: RO:0002296 UBERON:0005146 ! results in development of metanephric nephron tubule created_by: mah creation_date: 2010-03-18T03:41:23Z @@ -108021,8 +107465,8 @@ def: "The process whose specific outcome is the progression of the metanephric d is_a: GO:0072017 ! distal tubule development is_a: GO:0072234 ! metanephric nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005129 ! metanephric distal tubule -relationship: results_in_development_of UBERON:0005129 ! metanephric distal tubule +intersection_of: RO:0002296 UBERON:0005129 ! results in development of metanephric distal tubule +relationship: RO:0002296 UBERON:0005129 ! results in development of metanephric distal tubule created_by: mah creation_date: 2010-03-18T03:45:37Z @@ -108035,8 +107479,8 @@ synonym: "metanephric intermediate tubule development" EXACT [] is_a: GO:0072070 ! loop of Henle development is_a: GO:0072234 ! metanephric nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005130 ! metanephric loop of Henle -relationship: results_in_development_of UBERON:0005130 ! metanephric loop of Henle +intersection_of: RO:0002296 UBERON:0005130 ! results in development of metanephric loop of Henle +relationship: RO:0002296 UBERON:0005130 ! results in development of metanephric loop of Henle created_by: mah creation_date: 2010-03-18T03:46:18Z @@ -108048,8 +107492,8 @@ def: "The process whose specific outcome is the progression of the metanephric p is_a: GO:0072014 ! proximal tubule development is_a: GO:0072234 ! metanephric nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005151 ! metanephric proximal tubule -relationship: results_in_development_of UBERON:0005151 ! metanephric proximal tubule +intersection_of: RO:0002296 UBERON:0005151 ! results in development of metanephric proximal tubule +relationship: RO:0002296 UBERON:0005151 ! results in development of metanephric proximal tubule created_by: mah creation_date: 2010-03-18T03:46:54Z @@ -108062,8 +107506,8 @@ synonym: "metanephric juxtamedullary nephron development" RELATED [GOC:mtg_kidne is_a: GO:0072029 ! long nephron development is_a: GO:0072210 ! metanephric nephron development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005132 ! metanephric long nephron -relationship: results_in_development_of UBERON:0005132 ! metanephric long nephron +intersection_of: RO:0002296 UBERON:0005132 ! results in development of metanephric long nephron +relationship: RO:0002296 UBERON:0005132 ! results in development of metanephric long nephron created_by: mah creation_date: 2010-03-18T03:48:23Z @@ -108075,9 +107519,9 @@ def: "The biological process whose specific outcome is the progression of a meta synonym: "glomerulus capillary development" RELATED [GOC:mtg_kidney_jan10] is_a: GO:0072012 ! glomerulus vasculature development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005133 ! metanephric glomerulus vasculature +intersection_of: RO:0002296 UBERON:0005133 ! results in development of metanephric glomerulus vasculature relationship: part_of GO:0072224 ! metanephric glomerulus development -relationship: results_in_development_of UBERON:0005133 ! metanephric glomerulus vasculature +relationship: RO:0002296 UBERON:0005133 ! results in development of metanephric glomerulus vasculature created_by: mah creation_date: 2010-03-18T03:50:29Z @@ -108089,8 +107533,8 @@ def: "The process whose specific outcome is the progression of the metanephric n is_a: GO:0072009 ! nephron epithelium development is_a: GO:0072207 ! metanephric epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005134 ! metanephric nephron epithelium -relationship: results_in_development_of UBERON:0005134 ! metanephric nephron epithelium +intersection_of: RO:0002296 UBERON:0005134 ! results in development of metanephric nephron epithelium +relationship: RO:0002296 UBERON:0005134 ! results in development of metanephric nephron epithelium created_by: mah creation_date: 2010-03-19T03:29:49Z @@ -108102,9 +107546,9 @@ def: "The process whose specific outcome is the progression of the metanephric g is_a: GO:0072010 ! glomerular epithelium development is_a: GO:0072243 ! metanephric nephron epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005135 ! metanephric glomerular epithelium +intersection_of: RO:0002296 UBERON:0005135 ! results in development of metanephric glomerular epithelium relationship: part_of GO:0072224 ! metanephric glomerulus development -relationship: results_in_development_of UBERON:0005135 ! metanephric glomerular epithelium +relationship: RO:0002296 UBERON:0005135 ! results in development of metanephric glomerular epithelium created_by: mah creation_date: 2010-03-19T03:38:47Z @@ -108117,8 +107561,8 @@ synonym: "metanephric glomerular visceral epithelial cell differentiation" EXACT is_a: GO:0072112 ! podocyte differentiation is_a: GO:0072312 ! metanephric glomerular epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002525 ! metanephric podocyte -relationship: results_in_acquisition_of_features_of CL:0002525 ! metanephric podocyte +intersection_of: RO:0002315 CL:0002525 ! results in acquisition of features of metanephric podocyte +relationship: RO:0002315 CL:0002525 ! results in acquisition of features of metanephric podocyte property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23000" xsd:anyURI created_by: mah creation_date: 2010-03-19T03:44:57Z @@ -108132,9 +107576,9 @@ synonym: "metanephric glomerular visceral epithelial cell development" EXACT [] is_a: GO:0072015 ! podocyte development is_a: GO:0072313 ! metanephric glomerular epithelial cell development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of CL:0002525 ! metanephric podocyte +intersection_of: RO:0002296 CL:0002525 ! results in development of metanephric podocyte relationship: part_of GO:0072248 ! metanephric podocyte differentiation -relationship: results_in_development_of CL:0002525 ! metanephric podocyte +relationship: RO:0002296 CL:0002525 ! results in development of metanephric podocyte property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23000" xsd:anyURI created_by: mah creation_date: 2010-03-19T03:46:26Z @@ -108147,9 +107591,9 @@ def: "The process in which relatively unspecialized cells acquire specialized st is_a: GO:0072160 ! nephron tubule epithelial cell differentiation is_a: GO:0072202 ! cell differentiation involved in metanephros development intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1000123 ! metanephric nephron tubule epithelial cell +intersection_of: RO:0002315 CL:1000123 ! results in acquisition of features of metanephric nephron tubule epithelial cell relationship: part_of GO:0072234 ! metanephric nephron tubule development -relationship: results_in_acquisition_of_features_of CL:1000123 ! metanephric nephron tubule epithelial cell +relationship: RO:0002315 CL:1000123 ! results in acquisition of features of metanephric nephron tubule epithelial cell created_by: mah creation_date: 2010-03-19T04:11:02Z @@ -108161,9 +107605,9 @@ def: "The process whose specific outcome is the progression of the metanephric g is_a: GO:0072011 ! glomerular endothelium development is_a: GO:0072244 ! metanephric glomerular epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005136 ! metanephric glomerular endothelium +intersection_of: RO:0002296 UBERON:0005136 ! results in development of metanephric glomerular endothelium relationship: part_of GO:0072239 ! metanephric glomerulus vasculature development -relationship: results_in_development_of UBERON:0005136 ! metanephric glomerular endothelium +relationship: RO:0002296 UBERON:0005136 ! results in development of metanephric glomerular endothelium created_by: mah creation_date: 2010-03-30T02:42:26Z @@ -108174,9 +107618,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the metanephric capsule are generated and organized. The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage." [GOC:mtg_kidney_jan10] is_a: GO:0072128 ! renal capsule morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005137 ! metanephric capsule +intersection_of: RO:0002298 UBERON:0005137 ! results in morphogenesis of metanephric capsule relationship: part_of GO:0072213 ! metanephric capsule development -relationship: results_in_morphogenesis_of UBERON:0005137 ! metanephric capsule +relationship: RO:0002298 UBERON:0005137 ! results in morphogenesis of metanephric capsule created_by: mah creation_date: 2010-03-30T02:54:49Z @@ -108187,9 +107631,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of a metanephric capsule from unspecified parts. The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage." [GOC:mtg_kidney_jan10] is_a: GO:0072129 ! renal capsule formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005137 ! metanephric capsule +intersection_of: RO:0002297 UBERON:0005137 ! results in formation of anatomical entity metanephric capsule relationship: part_of GO:0072265 ! metanephric capsule morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005137 ! metanephric capsule +relationship: RO:0002297 UBERON:0005137 ! results in formation of anatomical entity metanephric capsule created_by: mah creation_date: 2010-03-30T02:56:35Z @@ -108216,9 +107660,9 @@ def: "The process whose specific outcome is the progression of the metanephric l is_a: GO:0072064 ! long descending thin limb development is_a: GO:0072243 ! metanephric nephron epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005139 ! metanephric long descending thin limb +intersection_of: RO:0002296 UBERON:0005139 ! results in development of metanephric long descending thin limb relationship: part_of GO:0072238 ! metanephric long nephron development -relationship: results_in_development_of UBERON:0005139 ! metanephric long descending thin limb +relationship: RO:0002296 UBERON:0005139 ! results in development of metanephric long descending thin limb created_by: mah creation_date: 2010-03-30T03:12:05Z @@ -108230,8 +107674,8 @@ def: "The process whose specific outcome is the progression of a short nephron i is_a: GO:0072030 ! short nephron development is_a: GO:0072210 ! metanephric nephron development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005140 ! metanephric short nephron -relationship: results_in_development_of UBERON:0005140 ! metanephric short nephron +intersection_of: RO:0002296 UBERON:0005140 ! results in development of metanephric short nephron +relationship: RO:0002296 UBERON:0005140 ! results in development of metanephric short nephron created_by: mah creation_date: 2010-03-30T03:15:18Z @@ -108243,9 +107687,9 @@ def: "The process whose specific outcome is the progression of the metanephric s is_a: GO:0072063 ! short descending thin limb development is_a: GO:0072243 ! metanephric nephron epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005141 ! metanephric short descending thin limb +intersection_of: RO:0002296 UBERON:0005141 ! results in development of metanephric short descending thin limb relationship: part_of GO:0072270 ! metanephric short nephron development -relationship: results_in_development_of UBERON:0005141 ! metanephric short descending thin limb +relationship: RO:0002296 UBERON:0005141 ! results in development of metanephric short descending thin limb created_by: mah creation_date: 2010-03-30T03:16:25Z @@ -108256,10 +107700,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the metanephric nephron are generated and organized. A metanephric nephron is the functional unit of the metanephros." [GOC:mtg_kidney_jan10] is_a: GO:0072028 ! nephron morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005110 ! metanephric nephron +intersection_of: RO:0002298 UBERON:0005110 ! results in morphogenesis of metanephric nephron relationship: part_of GO:0003338 ! metanephros morphogenesis relationship: part_of GO:0072210 ! metanephric nephron development -relationship: results_in_morphogenesis_of UBERON:0005110 ! metanephric nephron +relationship: RO:0002298 UBERON:0005110 ! results in morphogenesis of metanephric nephron created_by: mah creation_date: 2010-03-30T03:33:19Z @@ -108270,9 +107714,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the metanephric glomerulus are generated and organized. The metanephric glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney, or metanephros." [GOC:mtg_kidney_jan10] is_a: GO:0072102 ! glomerulus morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0004736 ! metanephric glomerulus +intersection_of: RO:0002298 UBERON:0004736 ! results in morphogenesis of metanephric glomerulus relationship: part_of GO:0072224 ! metanephric glomerulus development -relationship: results_in_morphogenesis_of UBERON:0004736 ! metanephric glomerulus +relationship: RO:0002298 UBERON:0004736 ! results in morphogenesis of metanephric glomerulus created_by: mah creation_date: 2010-04-01T02:46:58Z @@ -108283,10 +107727,10 @@ namespace: biological_process def: "The process in which the anatomical structures of the metanephric glomerulus vasculature are generated and organized. The metanephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the metanephric glomerulus." [GOC:mtg_kidney_jan10] is_a: GO:0072103 ! glomerulus vasculature morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005133 ! metanephric glomerulus vasculature +intersection_of: RO:0002298 UBERON:0005133 ! results in morphogenesis of metanephric glomerulus vasculature relationship: part_of GO:0072239 ! metanephric glomerulus vasculature development relationship: part_of GO:0072275 ! metanephric glomerulus morphogenesis -relationship: results_in_morphogenesis_of UBERON:0005133 ! metanephric glomerulus vasculature +relationship: RO:0002298 UBERON:0005133 ! results in morphogenesis of metanephric glomerulus vasculature created_by: mah creation_date: 2010-04-01T02:47:32Z @@ -108297,9 +107741,9 @@ namespace: biological_process def: "The process that gives rise to a metanephric glomerular capillary. This process pertains to the initial formation of a structure from unspecified parts." [GOC:mtg_kidney_jan10] is_a: GO:0072104 ! glomerular capillary formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005144 ! metanephric glomerular capillary +intersection_of: RO:0002297 UBERON:0005144 ! results in formation of anatomical entity metanephric glomerular capillary relationship: part_of GO:0072276 ! metanephric glomerulus vasculature morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005144 ! metanephric glomerular capillary +relationship: RO:0002297 UBERON:0005144 ! results in formation of anatomical entity metanephric glomerular capillary created_by: mah creation_date: 2010-04-01T02:47:56Z @@ -108310,9 +107754,9 @@ namespace: biological_process def: "The process in which the metanephric comma-shaped body is generated and organized. The metanephric comma-shaped body is the precursor structure to the metanephric S-shaped body that contributes to the morphogenesis of a nephron in the metanephros." [GOC:mtg_kidney_jan10] is_a: GO:0072049 ! comma-shaped body morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005145 ! metanephric comma-shaped body +intersection_of: RO:0002298 UBERON:0005145 ! results in morphogenesis of metanephric comma-shaped body relationship: part_of GO:0072273 ! metanephric nephron morphogenesis -relationship: results_in_morphogenesis_of UBERON:0005145 ! metanephric comma-shaped body +relationship: RO:0002298 UBERON:0005145 ! results in morphogenesis of metanephric comma-shaped body created_by: mah creation_date: 2010-04-01T03:14:42Z @@ -108324,10 +107768,10 @@ def: "The process in which the anatomical structures of a metanephric nephron tu is_a: GO:0072078 ! nephron tubule morphogenesis is_a: GO:0072173 ! metanephric tubule morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005146 ! metanephric nephron tubule +intersection_of: RO:0002298 UBERON:0005146 ! results in morphogenesis of metanephric nephron tubule relationship: part_of GO:0072234 ! metanephric nephron tubule development relationship: part_of GO:0072273 ! metanephric nephron morphogenesis -relationship: results_in_morphogenesis_of UBERON:0005146 ! metanephric nephron tubule +relationship: RO:0002298 UBERON:0005146 ! results in morphogenesis of metanephric nephron tubule created_by: mah creation_date: 2010-04-01T03:25:11Z @@ -108338,9 +107782,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the metanephric renal vesicle are generated and organized. The renal vesicle is the primordial structure of the metanephric nephron epithelium, and is formed by the condensation of mesenchymal cells." [GOC:mtg_kidney_jan10] is_a: GO:0072077 ! renal vesicle morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005147 ! metanephric renal vesicle +intersection_of: RO:0002298 UBERON:0005147 ! results in morphogenesis of metanephric renal vesicle relationship: part_of GO:0072273 ! metanephric nephron morphogenesis -relationship: results_in_morphogenesis_of UBERON:0005147 ! metanephric renal vesicle +relationship: RO:0002298 UBERON:0005147 ! results in morphogenesis of metanephric renal vesicle created_by: mah creation_date: 2010-04-01T03:28:00Z @@ -108351,9 +107795,9 @@ namespace: biological_process def: "The process in which the metanephric S-shaped body is generated and organized. The metanephric S-shaped body is the successor of the metanephric comma-shaped body that contributes to the morphogenesis of a nephron in the metanephros." [GOC:mtg_kidney_jan10] is_a: GO:0072050 ! S-shaped body morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005148 ! metanephric S-shaped body +intersection_of: RO:0002298 UBERON:0005148 ! results in morphogenesis of metanephric S-shaped body relationship: part_of GO:0072273 ! metanephric nephron morphogenesis -relationship: results_in_morphogenesis_of UBERON:0005148 ! metanephric S-shaped body +relationship: RO:0002298 UBERON:0005148 ! results in morphogenesis of metanephric S-shaped body created_by: mah creation_date: 2010-04-01T03:41:36Z @@ -108379,8 +107823,8 @@ synonym: "metanephric connecting duct development" EXACT [GOC:mtg_kidney_jan10] is_a: GO:0072027 ! connecting tubule development is_a: GO:0072234 ! metanephric nephron tubule development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005149 ! metanephric connecting tubule -relationship: results_in_development_of UBERON:0005149 ! metanephric connecting tubule +intersection_of: RO:0002296 UBERON:0005149 ! results in development of metanephric connecting tubule +relationship: RO:0002296 UBERON:0005149 ! results in development of metanephric connecting tubule created_by: mah creation_date: 2010-04-09T03:30:09Z @@ -108392,9 +107836,9 @@ def: "The process in which the anatomical structures of a metanephric distal tub is_a: GO:0072156 ! distal tubule morphogenesis is_a: GO:0072282 ! metanephric nephron tubule morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005129 ! metanephric distal tubule +intersection_of: RO:0002298 UBERON:0005129 ! results in morphogenesis of metanephric distal tubule relationship: part_of GO:0072235 ! metanephric distal tubule development -relationship: results_in_morphogenesis_of UBERON:0005129 ! metanephric distal tubule +relationship: RO:0002298 UBERON:0005129 ! results in morphogenesis of metanephric distal tubule created_by: mah creation_date: 2010-04-09T03:41:47Z @@ -108406,9 +107850,9 @@ def: "The process in which the anatomical structures of a metanephric proximal t is_a: GO:0072158 ! proximal tubule morphogenesis is_a: GO:0072282 ! metanephric nephron tubule morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005151 ! metanephric proximal tubule +intersection_of: RO:0002298 UBERON:0005151 ! results in morphogenesis of metanephric proximal tubule relationship: part_of GO:0072237 ! metanephric proximal tubule development -relationship: results_in_morphogenesis_of UBERON:0005151 ! metanephric proximal tubule +relationship: RO:0002298 UBERON:0005151 ! results in morphogenesis of metanephric proximal tubule created_by: mah creation_date: 2010-04-09T03:42:03Z @@ -108420,9 +107864,9 @@ def: "The developmental process pertaining to the initial formation of a metanep is_a: GO:0072079 ! nephron tubule formation is_a: GO:0072174 ! metanephric tubule formation intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0005146 ! metanephric nephron tubule +intersection_of: RO:0002297 UBERON:0005146 ! results in formation of anatomical entity metanephric nephron tubule relationship: part_of GO:0072282 ! metanephric nephron tubule morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0005146 ! metanephric nephron tubule +relationship: RO:0002297 UBERON:0005146 ! results in formation of anatomical entity metanephric nephron tubule created_by: mah creation_date: 2010-04-09T03:47:44Z @@ -108473,8 +107917,8 @@ def: "Any process that modulates the rate, frequency or extent of metanephric gl is_a: GO:0001656 ! metanephros development is_a: GO:0090192 ! regulation of glomerulus development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072224 ! metanephric glomerulus development -relationship: regulates GO:0072224 ! metanephric glomerulus development +intersection_of: RO:0002211 GO:0072224 ! regulates (processual) metanephric glomerulus development +relationship: RO:0002211 GO:0072224 ! regulates (processual) metanephric glomerulus development created_by: mah creation_date: 2010-04-09T05:03:14Z @@ -108487,8 +107931,8 @@ is_a: GO:0072217 ! negative regulation of metanephros development is_a: GO:0072298 ! regulation of metanephric glomerulus development is_a: GO:0090194 ! negative regulation of glomerulus development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0072224 ! metanephric glomerulus development -relationship: negatively_regulates GO:0072224 ! metanephric glomerulus development +intersection_of: RO:0002212 GO:0072224 ! negatively regulates metanephric glomerulus development +relationship: RO:0002212 GO:0072224 ! negatively regulates metanephric glomerulus development created_by: mah creation_date: 2010-04-09T05:03:41Z @@ -108501,8 +107945,8 @@ is_a: GO:0072216 ! positive regulation of metanephros development is_a: GO:0072298 ! regulation of metanephric glomerulus development is_a: GO:0090193 ! positive regulation of glomerulus development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0072224 ! metanephric glomerulus development -relationship: positively_regulates GO:0072224 ! metanephric glomerulus development +intersection_of: RO:0002213 GO:0072224 ! positively regulates metanephric glomerulus development +relationship: RO:0002213 GO:0072224 ! positively regulates metanephric glomerulus development created_by: mah creation_date: 2010-04-09T05:03:41Z @@ -108516,9 +107960,9 @@ synonym: "regulation of mesenchymal stem cell apoptotic process involved in meta is_a: GO:0072039 ! regulation of mesenchymal cell apoptotic process involved in nephron morphogenesis is_a: GO:1900211 ! regulation of mesenchymal cell apoptotic process involved in metanephros development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1901147 ! mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis -relationship: regulates GO:0072309 ! mesenchymal stem cell maintenance involved in metanephric nephron morphogenesis -relationship: regulates GO:1901147 ! mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis +intersection_of: RO:0002211 GO:1901147 ! regulates (processual) mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis +relationship: RO:0002211 GO:0072309 ! regulates (processual) mesenchymal stem cell maintenance involved in metanephric nephron morphogenesis +relationship: RO:0002211 GO:1901147 ! regulates (processual) mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis created_by: mah creation_date: 2010-04-09T05:03:41Z @@ -108533,9 +107977,9 @@ is_a: GO:0072040 ! negative regulation of mesenchymal cell apoptotic process inv is_a: GO:0072304 ! regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis is_a: GO:1900212 ! negative regulation of mesenchymal cell apoptotic process involved in metanephros development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1901147 ! mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis -relationship: negatively_regulates GO:0072309 ! mesenchymal stem cell maintenance involved in metanephric nephron morphogenesis -relationship: negatively_regulates GO:1901147 ! mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis +intersection_of: RO:0002212 GO:1901147 ! negatively regulates mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis +relationship: RO:0002212 GO:0072309 ! negatively regulates mesenchymal stem cell maintenance involved in metanephric nephron morphogenesis +relationship: RO:0002212 GO:1901147 ! negatively regulates mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis created_by: mah creation_date: 2010-04-09T05:03:41Z @@ -108550,9 +107994,9 @@ is_a: GO:0072041 ! positive regulation of mesenchymal cell apoptotic process inv is_a: GO:0072304 ! regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis is_a: GO:1900213 ! positive regulation of mesenchymal cell apoptotic process involved in metanephros development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1901147 ! mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis -relationship: positively_regulates GO:0072309 ! mesenchymal stem cell maintenance involved in metanephric nephron morphogenesis -relationship: positively_regulates GO:1901147 ! mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis +intersection_of: RO:0002213 GO:1901147 ! positively regulates mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis +relationship: RO:0002213 GO:0072309 ! positively regulates mesenchymal stem cell maintenance involved in metanephric nephron morphogenesis +relationship: RO:0002213 GO:1901147 ! positively regulates mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis created_by: mah creation_date: 2010-04-09T05:03:41Z @@ -108563,8 +108007,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of metanephric nephron tubule epithelial cell differentiation." [GOC:mtg_kidney_jan10] is_a: GO:0072182 ! regulation of nephron tubule epithelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072257 ! metanephric nephron tubule epithelial cell differentiation -relationship: regulates GO:0072257 ! metanephric nephron tubule epithelial cell differentiation +intersection_of: RO:0002211 GO:0072257 ! regulates (processual) metanephric nephron tubule epithelial cell differentiation +relationship: RO:0002211 GO:0072257 ! regulates (processual) metanephric nephron tubule epithelial cell differentiation created_by: mah creation_date: 2010-04-09T05:03:41Z @@ -108576,8 +108020,8 @@ def: "Any process that decreases the frequency, rate or extent of metanephric ne is_a: GO:0072183 ! negative regulation of nephron tubule epithelial cell differentiation is_a: GO:0072307 ! regulation of metanephric nephron tubule epithelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0072257 ! metanephric nephron tubule epithelial cell differentiation -relationship: negatively_regulates GO:0072257 ! metanephric nephron tubule epithelial cell differentiation +intersection_of: RO:0002212 GO:0072257 ! negatively regulates metanephric nephron tubule epithelial cell differentiation +relationship: RO:0002212 GO:0072257 ! negatively regulates metanephric nephron tubule epithelial cell differentiation created_by: mah creation_date: 2010-04-09T05:03:41Z @@ -108640,8 +108084,8 @@ def: "The chemical reactions and pathways resulting in the breakdown of monocarb is_a: GO:0032787 ! monocarboxylic acid metabolic process is_a: GO:0046395 ! carboxylic acid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:35757 ! monocarboxylic acid anion -relationship: has_primary_input CHEBI:35757 ! monocarboxylic acid anion +intersection_of: RO:0004009 CHEBI:35757 ! has primary input monocarboxylic acid anion +relationship: RO:0004009 CHEBI:35757 ! has primary input monocarboxylic acid anion created_by: mah creation_date: 2010-11-02T04:41:55Z @@ -108657,8 +108101,8 @@ synonym: "monocarboxylic acid synthesis" EXACT [GOC:mah] is_a: GO:0032787 ! monocarboxylic acid metabolic process is_a: GO:0046394 ! carboxylic acid biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:35757 ! monocarboxylic acid anion -relationship: has_primary_output CHEBI:35757 ! monocarboxylic acid anion +intersection_of: RO:0004008 CHEBI:35757 ! has primary output monocarboxylic acid anion +relationship: RO:0004008 CHEBI:35757 ! has primary output monocarboxylic acid anion created_by: mah creation_date: 2010-11-02T04:51:32Z @@ -108671,8 +108115,8 @@ subset: gocheck_do_not_annotate synonym: "amino acid derivative transport" EXACT [] is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:83821 ! amino acid derivative -relationship: has_primary_input CHEBI:83821 ! amino acid derivative +intersection_of: RO:0004009 CHEBI:83821 ! has primary input amino-acid derivative +relationship: RO:0004009 CHEBI:83821 ! has primary input amino-acid derivative created_by: mah creation_date: 2010-11-04T12:18:23Z @@ -108684,8 +108128,8 @@ def: "Binding to a modified amino acid." [GOC:mah] synonym: "amino acid derivative binding" EXACT [] is_a: GO:0005488 ! binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:83821 ! amino acid derivative -relationship: has_primary_input CHEBI:83821 ! amino acid derivative +intersection_of: RO:0004009 CHEBI:83821 ! has primary input amino-acid derivative +relationship: RO:0004009 CHEBI:83821 ! has primary input amino-acid derivative created_by: mah creation_date: 2010-11-04T05:45:32Z @@ -108697,8 +108141,8 @@ def: "The directed movement of compounds that contain sulfur, out of or within a synonym: "sulfur-containing compound transport" EXACT [GOC:mah] is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:26835 ! sulfur molecular entity -relationship: has_primary_input CHEBI:26835 ! sulfur molecular entity +intersection_of: RO:0004009 CHEBI:26835 ! has primary input sulfur molecular entity +relationship: RO:0004009 CHEBI:26835 ! has primary input sulfur molecular entity created_by: mah creation_date: 2010-11-11T11:43:56Z @@ -108711,9 +108155,9 @@ synonym: "amino acid derivative transmembrane transporter activity" EXACT [] synonym: "modified amino acid transporter activity" BROAD [GOC:mah] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:83821 ! amino acid derivative -relationship: has_primary_input CHEBI:83821 ! amino acid derivative +intersection_of: RO:0004009 CHEBI:83821 ! has primary input amino-acid derivative relationship: part_of GO:0072337 ! modified amino acid transport +relationship: RO:0004009 CHEBI:83821 ! has primary input amino-acid derivative created_by: mah creation_date: 2010-11-11T11:50:31Z @@ -108727,8 +108171,8 @@ subset: goslim_drosophila synonym: "cardiovascular system development" NARROW [] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001009 ! circulatory system -relationship: results_in_development_of UBERON:0001009 ! circulatory system +intersection_of: RO:0002296 UBERON:0001009 ! results in development of circulatory system +relationship: RO:0002296 UBERON:0001009 ! results in development of circulatory system created_by: mah creation_date: 2010-11-16T11:27:39Z @@ -108739,9 +108183,9 @@ namespace: biological_process def: "The progression of the vascular cord over time from its initial formation until its mature state. The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis." [GOC:mah, PMID:7084422, ZFA:0005077] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006965 ! vascular cord +intersection_of: RO:0002296 UBERON:0006965 ! results in development of vascular cord relationship: part_of GO:0072359 ! circulatory system development -relationship: results_in_development_of UBERON:0006965 ! vascular cord +relationship: RO:0002296 UBERON:0006965 ! results in development of vascular cord created_by: mah creation_date: 2010-11-16T11:46:55Z @@ -108754,10 +108198,10 @@ synonym: "microtubule-based organelle localization" EXACT [GOC:rl] is_a: GO:0010970 ! transport along microtubule is_a: GO:0051656 ! establishment of organelle localization intersection_of: GO:0046907 ! intracellular transport -intersection_of: has_primary_input GO:0043226 ! organelle -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: has_primary_input GO:0043226 ! organelle -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +intersection_of: RO:0004009 GO:0043226 ! has primary input organelle +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: RO:0004009 GO:0043226 ! has primary input organelle created_by: mah creation_date: 2010-12-01T04:59:11Z @@ -108774,10 +108218,10 @@ synonym: "ammonium transport" BROAD [] is_a: GO:0071705 ! nitrogen compound transport is_a: GO:0098662 ! inorganic cation transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:28938 ! ammonium -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:28938 ! ammonium -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:28938 ! has primary input ammonium +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:28938 ! has primary input ammonium property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22228" xsd:anyURI created_by: mah creation_date: 2010-12-10T10:29:57Z @@ -108791,8 +108235,8 @@ synonym: "toluene and derivative metabolic process" EXACT [GOC:mah] synonym: "toluene-containing compound metabolism" EXACT [GOC:mah] is_a: GO:0042537 ! benzene-containing compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:27024 ! toluenes -relationship: has_primary_input_or_output CHEBI:27024 ! toluenes +intersection_of: RO:0004007 CHEBI:27024 ! has primary input or output toluenes +relationship: RO:0004007 CHEBI:27024 ! has primary input or output toluenes created_by: mah creation_date: 2010-12-14T03:46:52Z @@ -108808,8 +108252,8 @@ synonym: "toluene-containing compound degradation" EXACT [GOC:mah] is_a: GO:0009056 ! catabolic process is_a: GO:0072490 ! toluene-containing compound metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:27024 ! toluenes -relationship: has_primary_input CHEBI:27024 ! toluenes +intersection_of: RO:0004009 CHEBI:27024 ! has primary input toluenes +relationship: RO:0004009 CHEBI:27024 ! has primary input toluenes created_by: mah creation_date: 2010-12-14T03:51:03Z @@ -108821,9 +108265,9 @@ def: "The reproductive developmental process whose specific outcome is the progr is_a: GO:0035295 ! tube development is_a: GO:0048608 ! reproductive structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001343 ! seminiferous tubule of testis +intersection_of: RO:0002296 UBERON:0001343 ! results in development of seminiferous tubule of testis relationship: part_of GO:0008584 ! male gonad development -relationship: results_in_development_of UBERON:0001343 ! seminiferous tubule of testis +relationship: RO:0002296 UBERON:0001343 ! results in development of seminiferous tubule of testis created_by: mah creation_date: 2011-01-04T12:50:36Z @@ -108834,10 +108278,10 @@ namespace: biological_process def: "The chemical reactions and pathways involving a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof." [GOC:mah] synonym: "purine and derivative metabolic process" EXACT [] synonym: "purine-containing compound metabolism" EXACT [GOC:mah] -is_a: GO:1901564 ! organonitrogen compound metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:26401 ! purines -relationship: has_primary_input_or_output CHEBI:26401 ! purines +intersection_of: RO:0004007 CHEBI:26401 ! has primary input or output purines +relationship: RO:0004007 CHEBI:26401 ! has primary input or output purines created_by: mah creation_date: 2011-01-04T03:03:59Z @@ -108851,11 +108295,11 @@ synonym: "purine-containing compound anabolism" EXACT [GOC:mah] synonym: "purine-containing compound biosynthesis" EXACT [GOC:mah] synonym: "purine-containing compound formation" EXACT [GOC:mah] synonym: "purine-containing compound synthesis" EXACT [GOC:mah] +is_a: GO:0009058 ! biosynthetic process is_a: GO:0072521 ! purine-containing compound metabolic process -is_a: GO:1901566 ! organonitrogen compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26401 ! purines -relationship: has_primary_output CHEBI:26401 ! purines +intersection_of: RO:0004008 CHEBI:26401 ! has primary output purines +relationship: RO:0004008 CHEBI:26401 ! has primary output purines created_by: mah creation_date: 2011-01-04T03:15:29Z @@ -108868,11 +108312,11 @@ synonym: "purine and derivative catabolic process" EXACT [] synonym: "purine-containing compound breakdown" EXACT [GOC:mah] synonym: "purine-containing compound catabolism" EXACT [GOC:mah] synonym: "purine-containing compound degradation" EXACT [GOC:mah] +is_a: GO:0009056 ! catabolic process is_a: GO:0072521 ! purine-containing compound metabolic process -is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:26401 ! purines -relationship: has_primary_input CHEBI:26401 ! purines +intersection_of: RO:0004009 CHEBI:26401 ! has primary input purines +relationship: RO:0004009 CHEBI:26401 ! has primary input purines created_by: mah creation_date: 2011-01-04T03:17:20Z @@ -108886,10 +108330,10 @@ synonym: "purine-containing compound membrane transport" EXACT [] is_a: GO:0055085 ! transmembrane transport is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:26401 ! purines -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:26401 ! purines -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:26401 ! has primary input purines +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:26401 ! has primary input purines created_by: mah creation_date: 2011-01-05T01:45:14Z @@ -108900,8 +108344,8 @@ namespace: biological_process def: "A change in the morphology or behavior of a fibroblast resulting from exposure to an activating factor such as a cellular or soluble ligand." [CL:0000057, GOC:BHF, GOC:mah] is_a: GO:0001775 ! cell activation intersection_of: GO:0001775 ! cell activation -intersection_of: has_primary_input CL:0000057 ! fibroblast -relationship: has_primary_input CL:0000057 ! fibroblast +intersection_of: RO:0004009 CL:0000057 ! has primary input fibroblast +relationship: RO:0004009 CL:0000057 ! has primary input fibroblast created_by: mah creation_date: 2011-01-14T04:35:08Z @@ -108914,8 +108358,8 @@ synonym: "L-Tyr binding" EXACT [GOC:mah] synonym: "tyrosine binding" BROAD [] is_a: GO:0016597 ! amino acid binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:58315 ! L-tyrosine zwitterion -relationship: has_primary_input CHEBI:58315 ! L-tyrosine zwitterion +intersection_of: RO:0004009 CHEBI:58315 ! has primary input L-tyrosine zwitterion +relationship: RO:0004009 CHEBI:58315 ! has primary input L-tyrosine zwitterion created_by: mah creation_date: 2011-01-19T05:43:55Z @@ -108929,9 +108373,9 @@ synonym: "pancreatic B cell maturation" EXACT [CL:0000169, GOC:mah] synonym: "pancreatic beta cell maturation" EXACT [CL:0000169, GOC:mah] is_a: GO:0002071 ! glandular epithelial cell maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of CL:0000169 ! type B pancreatic cell +intersection_of: RO:0002299 CL:0000169 ! results in maturation of type B pancreatic cell relationship: part_of GO:0003323 ! type B pancreatic cell development -relationship: results_in_maturation_of CL:0000169 ! type B pancreatic cell +relationship: RO:0002299 CL:0000169 ! results in maturation of type B pancreatic cell created_by: mah creation_date: 2011-01-27T01:57:14Z @@ -108954,9 +108398,9 @@ namespace: biological_process def: "The process in which the anatomical structures of the liver are generated and organized." [GOC:mah] is_a: GO:0022612 ! gland morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002107 ! liver +intersection_of: RO:0002298 UBERON:0002107 ! results in morphogenesis of liver relationship: part_of GO:0001889 ! liver development -relationship: results_in_morphogenesis_of UBERON:0002107 ! liver +relationship: RO:0002298 UBERON:0002107 ! results in morphogenesis of liver created_by: mah creation_date: 2011-02-02T03:41:30Z @@ -108973,8 +108417,8 @@ synonym: "programmed cell death of endothelial cells by apoptosis" EXACT [GOC:ma synonym: "programmed cell death, endothelial cells" EXACT [GOC:mah] is_a: GO:0006915 ! apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000115 ! endothelial cell -relationship: occurs_in CL:0000115 ! endothelial cell +intersection_of: BFO:0000066 CL:0000115 ! occurs in endothelial cell +relationship: BFO:0000066 CL:0000115 ! occurs in endothelial cell created_by: mah creation_date: 2011-02-02T03:56:24Z @@ -108985,10 +108429,10 @@ namespace: biological_process def: "The chemical reactions and pathways involving diatomic oxygen (O2)." [GOC:mah] synonym: "diatomic oxygen metabolic process" EXACT [CHEBI:33263] synonym: "oxygen metabolism" EXACT [GOC:mah] -is_a: GO:0044237 ! cellular metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:15379 ! dioxygen -relationship: has_primary_input_or_output CHEBI:15379 ! dioxygen +intersection_of: RO:0004007 CHEBI:15379 ! has primary input or output dioxygen +relationship: RO:0004007 CHEBI:15379 ! has primary input or output dioxygen created_by: mah creation_date: 2011-02-11T10:46:51Z @@ -109000,8 +108444,8 @@ def: "The directed movement of a protein to a specific location on or in an orga synonym: "establishment of protein localisation to organelle" EXACT [GOC:mah] is_a: GO:0045184 ! establishment of protein localization intersection_of: GO:0045184 ! establishment of protein localization -intersection_of: has_target_end_location GO:0043226 ! organelle -relationship: has_target_end_location GO:0043226 ! organelle +intersection_of: RO:0002339 GO:0043226 ! has target end location organelle +relationship: RO:0002339 GO:0043226 ! has target end location organelle created_by: mah creation_date: 2011-02-14T01:56:51Z @@ -109014,8 +108458,8 @@ synonym: "maintenance of protein localisation to organelle" EXACT [GOC:mah] synonym: "maintenance of protein localization to organelle" EXACT [] is_a: GO:0032507 ! maintenance of protein location in cell intersection_of: GO:0045185 ! maintenance of protein location -intersection_of: occurs_in GO:0043226 ! organelle -relationship: occurs_in GO:0043226 ! organelle +intersection_of: BFO:0000066 GO:0043226 ! occurs in organelle +relationship: BFO:0000066 GO:0043226 ! occurs in organelle relationship: part_of GO:0033365 ! protein localization to organelle created_by: mah creation_date: 2011-02-14T02:09:13Z @@ -109031,8 +108475,8 @@ synonym: "protein localization in membrane" EXACT [] is_a: GO:0008104 ! protein localization is_a: GO:0051668 ! localization within membrane intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0016020 ! membrane -relationship: has_target_end_location GO:0016020 ! membrane +intersection_of: RO:0002339 GO:0016020 ! has target end location membrane +relationship: RO:0002339 GO:0016020 ! has target end location membrane created_by: mah creation_date: 2011-02-14T02:35:18Z @@ -109052,10 +108496,10 @@ synonym: "protein-plasma membrane targeting" RELATED [GOC:mah] is_a: GO:0072657 ! protein localization to membrane is_a: GO:1990778 ! protein localization to cell periphery intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005886 ! plasma membrane -intersection_of: has_target_start_location GO:0005622 ! intracellular anatomical structure -relationship: has_target_end_location GO:0005886 ! plasma membrane -relationship: has_target_start_location GO:0005622 ! intracellular anatomical structure +intersection_of: RO:0002338 GO:0005622 ! has target start location intracellular anatomical structure +intersection_of: RO:0002339 GO:0005886 ! has target end location plasma membrane +relationship: RO:0002338 GO:0005622 ! has target start location intracellular anatomical structure +relationship: RO:0002339 GO:0005886 ! has target end location plasma membrane created_by: tb creation_date: 2009-07-10T10:29:23Z @@ -109067,8 +108511,8 @@ def: "A process in which a protein is transported to, or maintained at, a locati synonym: "protein localisation to vacuole" EXACT [GOC:mah] is_a: GO:0033365 ! protein localization to organelle intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005773 ! vacuole -relationship: has_target_end_location GO:0005773 ! vacuole +intersection_of: RO:0002339 GO:0005773 ! has target end location vacuole +relationship: RO:0002339 GO:0005773 ! has target end location vacuole created_by: mah creation_date: 2011-02-14T02:55:35Z @@ -109080,8 +108524,8 @@ def: "The directed movement of a protein to a specific location in a vacuole." [ synonym: "establishment of protein localisation to vacuole" EXACT [GOC:mah] is_a: GO:0072594 ! establishment of protein localization to organelle intersection_of: GO:0045184 ! establishment of protein localization -intersection_of: has_target_end_location GO:0005773 ! vacuole -relationship: has_target_end_location GO:0005773 ! vacuole +intersection_of: RO:0002339 GO:0005773 ! has target end location vacuole +relationship: RO:0002339 GO:0005773 ! has target end location vacuole created_by: mah creation_date: 2011-02-14T02:56:29Z @@ -109092,8 +108536,8 @@ namespace: biological_process def: "Any process in which a protein is maintained in a specific location in a vacuole, and is prevented from moving elsewhere." [GOC:mah] is_a: GO:0072595 ! maintenance of protein localization in organelle intersection_of: GO:0045185 ! maintenance of protein location -intersection_of: occurs_in GO:0005773 ! vacuole -relationship: occurs_in GO:0005773 ! vacuole +intersection_of: BFO:0000066 GO:0005773 ! occurs in vacuole +relationship: BFO:0000066 GO:0005773 ! occurs in vacuole relationship: part_of GO:0072665 ! protein localization to vacuole created_by: mah creation_date: 2011-02-14T02:56:57Z @@ -109107,8 +108551,8 @@ synonym: "multinuclear osteoclast formation" RELATED [GOC:BHF, GOC:mah] synonym: "multinuclear osteoclast morphogenesis" RELATED [GOC:BHF, GOC:mah] is_a: GO:0030316 ! osteoclast differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000779 ! multinuclear osteoclast -relationship: results_in_acquisition_of_features_of CL:0000779 ! multinuclear osteoclast +intersection_of: RO:0002315 CL:0000779 ! results in acquisition of features of multinuclear osteoclast +relationship: RO:0002315 CL:0000779 ! results in acquisition of features of multinuclear osteoclast created_by: mah creation_date: 2011-02-22T02:10:38Z @@ -109119,8 +108563,8 @@ namespace: biological_process def: "The movement of a lymphocyte within or between different tissues and organs of the body." [CL:0000542, GOC:BHF, GOC:mah] is_a: GO:0071674 ! mononuclear cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000542 ! lymphocyte -relationship: results_in_movement_of CL:0000542 ! lymphocyte +intersection_of: RO:0002565 CL:0000542 ! results in movement of lymphocyte +relationship: RO:0002565 CL:0000542 ! results in movement of lymphocyte created_by: mah creation_date: 2011-02-22T03:38:12Z @@ -109134,8 +108578,8 @@ synonym: "T-cell migration" EXACT [CL:0000084] synonym: "T-lymphocyte migration" EXACT [CL:0000084] is_a: GO:0072676 ! lymphocyte migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000084 ! T cell -relationship: results_in_movement_of CL:0000084 ! T cell +intersection_of: RO:0002565 CL:0000084 ! results in movement of T cell +relationship: RO:0002565 CL:0000084 ! results in movement of T cell created_by: mah creation_date: 2011-02-22T03:40:40Z @@ -109151,8 +108595,8 @@ synonym: "immature T-lymphocyte migration" RELATED [CL:0000893] synonym: "thymic lymphocyte migration" EXACT [CL:0000893] is_a: GO:0072678 ! T cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000893 ! thymocyte -relationship: results_in_movement_of CL:0000893 ! thymocyte +intersection_of: RO:0002565 CL:0000893 ! results in movement of thymocyte +relationship: RO:0002565 CL:0000893 ! results in movement of thymocyte created_by: mah creation_date: 2011-02-22T03:47:51Z @@ -109164,8 +108608,8 @@ def: "A process in which a protein is transported to, or maintained in, the cell synonym: "protein localisation to cell cortex" EXACT [GOC:mah] is_a: GO:1990778 ! protein localization to cell periphery intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005938 ! cell cortex -relationship: has_target_end_location GO:0005938 ! cell cortex +intersection_of: RO:0002339 GO:0005938 ! has target end location cell cortex +relationship: RO:0002339 GO:0005938 ! has target end location cell cortex created_by: mah creation_date: 2012-04-11T01:16:33Z @@ -109177,8 +108621,8 @@ def: "A cellular protein localization process in which a protein is transported synonym: "protein localisation to microtubule cytoskeleton" EXACT [GOC:mah] is_a: GO:0044380 ! protein localization to cytoskeleton intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0015630 ! microtubule cytoskeleton -relationship: has_target_end_location GO:0015630 ! microtubule cytoskeleton +intersection_of: RO:0002339 GO:0015630 ! has target end location microtubule cytoskeleton +relationship: RO:0002339 GO:0015630 ! has target end location microtubule cytoskeleton created_by: mah creation_date: 2012-04-11T01:19:35Z @@ -109187,12 +108631,12 @@ id: GO:0080053 name: response to phenylalanine namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phenylalanine stimulus." [PMID:15889294] -is_a: GO:0010243 ! response to organonitrogen compound is_a: GO:0014070 ! response to organic cyclic compound +is_a: GO:1901698 ! response to nitrogen compound is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:28044 ! phenylalanine -relationship: has_primary_input CHEBI:28044 ! phenylalanine +intersection_of: RO:0004009 CHEBI:28044 ! has primary input phenylalanine +relationship: RO:0004009 CHEBI:28044 ! has primary input phenylalanine [Term] id: GO:0080090 @@ -109201,8 +108645,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism involving those compounds formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism." [PMID:19211694] is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0044238 ! primary metabolic process -relationship: regulates GO:0044238 ! primary metabolic process +intersection_of: RO:0002211 GO:0044238 ! regulates (processual) primary metabolic process +relationship: RO:0002211 GO:0044238 ! regulates (processual) primary metabolic process created_by: dhl creation_date: 2009-04-22T04:30:52Z @@ -109215,8 +108659,8 @@ comment: Note that this term is in the subset of terms that should not be used f subset: gocheck_do_not_annotate is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006950 ! response to stress -relationship: regulates GO:0006950 ! response to stress +intersection_of: RO:0002211 GO:0006950 ! regulates (processual) response to stress +relationship: RO:0002211 GO:0006950 ! regulates (processual) response to stress created_by: dhl creation_date: 2009-05-06T04:51:28Z @@ -109229,8 +108673,8 @@ synonym: "amino acid homeostasis" BROAD [] synonym: "cellular amino acid homeostasis" EXACT [] is_a: GO:0055082 ! intracellular chemical homeostasis intersection_of: GO:0055082 ! intracellular chemical homeostasis -intersection_of: regulates_levels_of CHEBI:35238 ! amino acid zwitterion -relationship: regulates_levels_of CHEBI:35238 ! amino acid zwitterion +intersection_of: RO:0002332 CHEBI:35238 ! regulates levels of amino-acid zwitterion +relationship: RO:0002332 CHEBI:35238 ! regulates levels of amino-acid zwitterion created_by: dhl creation_date: 2010-01-27T04:47:27Z @@ -109241,8 +108685,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency or extent of fertilization. Fertilization is the union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy)." [GOC:DHL, PMID:20478994] is_a: GO:2000241 ! regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009566 ! fertilization -relationship: regulates GO:0009566 ! fertilization +intersection_of: RO:0002211 GO:0009566 ! regulates (processual) fertilization +relationship: RO:0002211 GO:0009566 ! regulates (processual) fertilization created_by: dhl creation_date: 2010-09-01T03:44:27Z @@ -109257,8 +108701,8 @@ synonym: "lytic vacuole organisation" EXACT [] synonym: "lytic vacuole organization and biogenesis" RELATED [] is_a: GO:0007033 ! vacuole organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0000323 ! lytic vacuole -relationship: results_in_organization_of GO:0000323 ! lytic vacuole +intersection_of: RO:0002592 GO:0000323 ! results in organization of lytic vacuole +relationship: RO:0002592 GO:0000323 ! results in organization of lytic vacuole created_by: dhl creation_date: 2011-04-25T04:40:46Z @@ -109270,8 +108714,8 @@ def: "The aggregation, arrangement and bonding together of the extracellular mat is_a: GO:0022607 ! cellular component assembly is_a: GO:0030198 ! extracellular matrix organization intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0031012 ! extracellular matrix -relationship: results_in_assembly_of GO:0031012 ! extracellular matrix +intersection_of: RO:0002588 GO:0031012 ! results in assembly of extracellular matrix +relationship: RO:0002588 GO:0031012 ! results in assembly of extracellular matrix created_by: jl creation_date: 2010-07-14T12:52:49Z @@ -109282,8 +108726,8 @@ namespace: biological_process def: "An action potential that occurs in a cardiac muscle cell." [GOC:BHF, GOC:mtg_cardiac_conduct_nov11] is_a: GO:0001508 ! action potential intersection_of: GO:0001508 ! action potential -intersection_of: occurs_in CL:0000746 ! cardiac muscle cell -relationship: occurs_in CL:0000746 ! cardiac muscle cell +intersection_of: BFO:0000066 CL:0000746 ! occurs in cardiac muscle cell +relationship: BFO:0000066 CL:0000746 ! occurs in cardiac muscle cell created_by: tb creation_date: 2011-11-10T07:45:11Z @@ -109298,8 +108742,8 @@ synonym: "sinoatrial node cardiac muscle cell action potential" EXACT [] synonym: "sinus node cardiac muscle cell action potential" NARROW [] is_a: GO:0086001 ! cardiac muscle cell action potential intersection_of: GO:0001508 ! action potential -intersection_of: occurs_in CL:1000409 ! myocyte of sinoatrial node -relationship: occurs_in CL:1000409 ! myocyte of sinoatrial node +intersection_of: BFO:0000066 CL:1000409 ! occurs in myocyte of sinoatrial node +relationship: BFO:0000066 CL:1000409 ! occurs in myocyte of sinoatrial node relationship: part_of GO:0086018 ! SA node cell to atrial cardiac muscle cell signaling created_by: tb creation_date: 2011-11-10T08:50:15Z @@ -109313,8 +108757,8 @@ synonym: "atrioventricular node cardiac muscle cell action potential" EXACT [] synonym: "AV node cardiac muscle cell action potential" EXACT [] is_a: GO:0086001 ! cardiac muscle cell action potential intersection_of: GO:0001508 ! action potential -intersection_of: occurs_in CL:1000410 ! myocyte of atrioventricular node -relationship: occurs_in CL:1000410 ! myocyte of atrioventricular node +intersection_of: BFO:0000066 CL:1000410 ! occurs in myocyte of atrioventricular node +relationship: BFO:0000066 CL:1000410 ! occurs in myocyte of atrioventricular node relationship: part_of GO:0086027 ! AV node cell to bundle of His cell signaling created_by: tb creation_date: 2011-11-10T08:58:56Z @@ -109326,8 +108770,8 @@ namespace: biological_process def: "An action potential that occurs in a Purkinje myocyte." [GOC:BHF, GOC:mtg_cardiac_conduct_nov11] is_a: GO:0086001 ! cardiac muscle cell action potential intersection_of: GO:0001508 ! action potential -intersection_of: occurs_in CL:0002068 ! Purkinje myocyte -relationship: occurs_in CL:0002068 ! Purkinje myocyte +intersection_of: BFO:0000066 CL:0002068 ! occurs in Purkinje myocyte +relationship: BFO:0000066 CL:0002068 ! occurs in Purkinje myocyte relationship: part_of GO:0086029 ! Purkinje myocyte to ventricular cardiac muscle cell signaling created_by: tb creation_date: 2011-11-10T08:58:56Z @@ -109394,10 +108838,10 @@ synonym: "Purkinje myocyte to ventricular cardiac muscle cell signalling" EXACT is_a: GO:0086019 ! cell-cell signaling involved in cardiac conduction is_a: GO:0086068 ! Purkinje myocyte to ventricular cardiac muscle cell communication intersection_of: GO:0007267 ! cell-cell signaling -intersection_of: has_end_location CL:2000046 ! ventricular cardiac muscle cell -intersection_of: has_start_location CL:0002068 ! Purkinje myocyte -relationship: has_end_location CL:2000046 ! ventricular cardiac muscle cell -relationship: has_start_location CL:0002068 ! Purkinje myocyte +intersection_of: RO:0002231 CL:0002068 ! has start location Purkinje myocyte +intersection_of: RO:0002232 CL:2000046 ! has end location ventricular cardiac muscle cell +relationship: RO:0002231 CL:0002068 ! has start location Purkinje myocyte +relationship: RO:0002232 CL:2000046 ! has end location ventricular cardiac muscle cell created_by: tb creation_date: 2011-11-11T02:02:14Z @@ -109409,8 +108853,8 @@ def: "An action potential that occurs in a bundle of His cell." [GOC:BHF, GOC:mt synonym: "bundle of His cardiac muscle cell action potential" EXACT [] is_a: GO:0086001 ! cardiac muscle cell action potential intersection_of: GO:0001508 ! action potential -intersection_of: occurs_in CL:0010005 ! atrioventricular bundle cell -relationship: occurs_in CL:0010005 ! atrioventricular bundle cell +intersection_of: BFO:0000066 CL:0010005 ! occurs in atrioventricular bundle cell +relationship: BFO:0000066 CL:0010005 ! occurs in atrioventricular bundle cell relationship: part_of GO:0086028 ! bundle of His cell to Purkinje myocyte signaling created_by: dph creation_date: 2011-11-15T12:01:18Z @@ -109515,14 +108959,14 @@ def: "The directed movement of L-glutamate out of the vacuole, across the vacuol is_a: GO:0015813 ! L-glutamate transmembrane transport is_a: GO:0032974 ! amino acid transmembrane export from vacuole intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29985 ! L-glutamate(1-) -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005775 ! vacuolar lumen -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:29985 ! L-glutamate(1-) -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005775 ! vacuolar lumen -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002338 GO:0005775 ! has target start location vacuolar lumen +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:29985 ! has primary input L-glutamate(1-) +relationship: RO:0002338 GO:0005775 ! has target start location vacuolar lumen +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:29985 ! has primary input L-glutamate(1-) [Term] id: GO:0089718 @@ -109539,14 +108983,14 @@ synonym: "L-amino acid uptake" NARROW [] is_a: GO:0003333 ! amino acid transmembrane transport is_a: GO:0098739 ! import across plasma membrane intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005576 ! extracellular region -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:35238 ! amino acid zwitterion -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005576 ! extracellular region -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:35238 ! has primary input amino-acid zwitterion created_by: jl creation_date: 2012-11-14T14:21:41Z @@ -109557,8 +109001,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of the hypoblast over time, from its formation to the mature structure. The hypoblast is a tissue formed from the inner cell mass that lies beneath the epiblast." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0009888 ! tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000089 ! hypoblast (generic) -relationship: results_in_development_of UBERON:0000089 ! hypoblast (generic) +intersection_of: RO:0002296 UBERON:0000089 ! results in development of hypoblast (generic) +relationship: RO:0002296 UBERON:0000089 ! results in development of hypoblast (generic) created_by: tb creation_date: 2009-07-29T10:25:54Z @@ -109569,10 +109013,10 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of the primitive streak from unspecified parts. The primitive streak is a ridge of cells running along the midline of the embryo where the mesoderm ingresses. It defines the anterior-posterior axis." [GOC:dph, GOC:sdb_2009, GOC:tb] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0004341 ! primitive streak +intersection_of: RO:0002297 UBERON:0004341 ! results in formation of anatomical entity primitive streak relationship: part_of GO:0001702 ! gastrulation with mouth forming second relationship: part_of GO:0009948 ! anterior/posterior axis specification -relationship: results_in_formation_of_anatomical_entity UBERON:0004341 ! primitive streak +relationship: RO:0002297 UBERON:0004341 ! results in formation of anatomical entity primitive streak created_by: tb creation_date: 2009-07-29T10:31:31Z @@ -109584,8 +109028,8 @@ def: "Any process that modulates the frequency, rate, or extent of neutrophil ch is_a: GO:0071622 ! regulation of granulocyte chemotaxis is_a: GO:1902622 ! regulation of neutrophil migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030593 ! neutrophil chemotaxis -relationship: regulates GO:0030593 ! neutrophil chemotaxis +intersection_of: RO:0002211 GO:0030593 ! regulates (processual) neutrophil chemotaxis +relationship: RO:0002211 GO:0030593 ! regulates (processual) neutrophil chemotaxis created_by: tb creation_date: 2009-08-03T10:09:34Z @@ -109598,8 +109042,8 @@ is_a: GO:0071624 ! positive regulation of granulocyte chemotaxis is_a: GO:0090022 ! regulation of neutrophil chemotaxis is_a: GO:1902624 ! positive regulation of neutrophil migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030593 ! neutrophil chemotaxis -relationship: positively_regulates GO:0030593 ! neutrophil chemotaxis +intersection_of: RO:0002213 GO:0030593 ! positively regulates neutrophil chemotaxis +relationship: RO:0002213 GO:0030593 ! positively regulates neutrophil chemotaxis created_by: tb creation_date: 2009-08-03T10:12:23Z @@ -109612,8 +109056,8 @@ is_a: GO:0071623 ! negative regulation of granulocyte chemotaxis is_a: GO:0090022 ! regulation of neutrophil chemotaxis is_a: GO:1902623 ! negative regulation of neutrophil migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030593 ! neutrophil chemotaxis -relationship: negatively_regulates GO:0030593 ! neutrophil chemotaxis +intersection_of: RO:0002212 GO:0030593 ! negatively regulates neutrophil chemotaxis +relationship: RO:0002212 GO:0030593 ! negatively regulates neutrophil chemotaxis created_by: tb creation_date: 2009-08-03T10:13:09Z @@ -109625,8 +109069,8 @@ def: "Any process that modulates the frequency, rate, or extent of monocyte chem is_a: GO:0002688 ! regulation of leukocyte chemotaxis is_a: GO:0071675 ! regulation of mononuclear cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002548 ! monocyte chemotaxis -relationship: regulates GO:0002548 ! monocyte chemotaxis +intersection_of: RO:0002211 GO:0002548 ! regulates (processual) monocyte chemotaxis +relationship: RO:0002211 GO:0002548 ! regulates (processual) monocyte chemotaxis created_by: tb creation_date: 2009-08-03T10:17:03Z @@ -109639,8 +109083,8 @@ is_a: GO:0002690 ! positive regulation of leukocyte chemotaxis is_a: GO:0071677 ! positive regulation of mononuclear cell migration is_a: GO:0090025 ! regulation of monocyte chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002548 ! monocyte chemotaxis -relationship: positively_regulates GO:0002548 ! monocyte chemotaxis +intersection_of: RO:0002213 GO:0002548 ! positively regulates monocyte chemotaxis +relationship: RO:0002213 GO:0002548 ! positively regulates monocyte chemotaxis created_by: tb creation_date: 2009-08-03T10:18:54Z @@ -109653,8 +109097,8 @@ is_a: GO:0002689 ! negative regulation of leukocyte chemotaxis is_a: GO:0071676 ! negative regulation of mononuclear cell migration is_a: GO:0090025 ! regulation of monocyte chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002548 ! monocyte chemotaxis -relationship: negatively_regulates GO:0002548 ! monocyte chemotaxis +intersection_of: RO:0002212 GO:0002548 ! negatively regulates monocyte chemotaxis +relationship: RO:0002212 GO:0002548 ! negatively regulates monocyte chemotaxis created_by: tb creation_date: 2009-08-03T10:19:40Z @@ -109698,9 +109142,9 @@ def: "Any process that increases the rate, frequency or extent of microtubule nu is_a: GO:0010968 ! regulation of microtubule nucleation is_a: GO:0031116 ! positive regulation of microtubule polymerization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007020 ! microtubule nucleation -relationship: positively_regulates GO:0007020 ! microtubule nucleation -relationship: positively_regulates GO:0046785 ! microtubule polymerization +intersection_of: RO:0002213 GO:0007020 ! positively regulates microtubule nucleation +relationship: RO:0002213 GO:0007020 ! positively regulates microtubule nucleation +relationship: RO:0002213 GO:0046785 ! positively regulates microtubule polymerization created_by: tb creation_date: 2009-08-12T11:33:09Z @@ -109712,8 +109156,8 @@ def: "Any process that increases the rate, frequency or extent of a cellular pro is_a: GO:0010564 ! regulation of cell cycle process is_a: GO:0045787 ! positive regulation of cell cycle intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0022402 ! cell cycle process -relationship: positively_regulates GO:0022402 ! cell cycle process +intersection_of: RO:0002213 GO:0022402 ! positively regulates cell cycle process +relationship: RO:0002213 GO:0022402 ! positively regulates cell cycle process created_by: tb creation_date: 2009-09-09T11:39:52Z @@ -109724,8 +109168,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency or extent of ribosome biogenesis. Ribosome biogenesis is the cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits." [GOC:dph, GOC:tb] is_a: GO:0044087 ! regulation of cellular component biogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042254 ! ribosome biogenesis -relationship: regulates GO:0042254 ! ribosome biogenesis +intersection_of: RO:0002211 GO:0042254 ! regulates (processual) ribosome biogenesis +relationship: RO:0002211 GO:0042254 ! regulates (processual) ribosome biogenesis created_by: tb creation_date: 2009-09-11T10:32:17Z @@ -109737,8 +109181,8 @@ def: "Any process that increases the rate, frequency or extent of ribosome bioge is_a: GO:0044089 ! positive regulation of cellular component biogenesis is_a: GO:0090069 ! regulation of ribosome biogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042254 ! ribosome biogenesis -relationship: positively_regulates GO:0042254 ! ribosome biogenesis +intersection_of: RO:0002213 GO:0042254 ! positively regulates ribosome biogenesis +relationship: RO:0002213 GO:0042254 ! positively regulates ribosome biogenesis created_by: tb creation_date: 2009-09-11T10:32:17Z @@ -109750,8 +109194,8 @@ def: "Any process that decreases the rate, frequency or extent of ribosome bioge is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:0090069 ! regulation of ribosome biogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042254 ! ribosome biogenesis -relationship: negatively_regulates GO:0042254 ! ribosome biogenesis +intersection_of: RO:0002212 GO:0042254 ! negatively regulates ribosome biogenesis +relationship: RO:0002212 GO:0042254 ! negatively regulates ribosome biogenesis created_by: tb creation_date: 2009-09-11T10:32:17Z @@ -109762,8 +109206,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:dph, GOC:tb] is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0015833 ! peptide transport -relationship: regulates GO:0015833 ! peptide transport +intersection_of: RO:0002211 GO:0015833 ! regulates (processual) peptide transport +relationship: RO:0002211 GO:0015833 ! regulates (processual) peptide transport created_by: tb creation_date: 2009-10-23T11:21:38Z @@ -109775,8 +109219,8 @@ def: "Any process that increases the rate, frequency or extent of extracellular is_a: GO:0010715 ! regulation of extracellular matrix disassembly is_a: GO:1903055 ! positive regulation of extracellular matrix organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0022617 ! extracellular matrix disassembly -relationship: positively_regulates GO:0022617 ! extracellular matrix disassembly +intersection_of: RO:0002213 GO:0022617 ! positively regulates extracellular matrix disassembly +relationship: RO:0002213 GO:0022617 ! positively regulates extracellular matrix disassembly created_by: tb creation_date: 2009-11-04T10:03:25Z @@ -109787,9 +109231,9 @@ namespace: biological_process def: "The progression of the cochlea over time from its formation to the mature structure. The cochlea is the snail-shaped portion of the inner ear that is responsible for the detection of sound." [GOC:dph, GOC:tb] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001844 ! cochlea +intersection_of: RO:0002296 UBERON:0001844 ! results in development of cochlea relationship: part_of GO:0048839 ! inner ear development -relationship: results_in_development_of UBERON:0001844 ! cochlea +relationship: RO:0002296 UBERON:0001844 ! results in development of cochlea created_by: tb creation_date: 2009-11-18T11:42:15Z @@ -109800,10 +109244,10 @@ namespace: biological_process def: "The process in which the cochlea is generated and organized." [GOC:dph, GOC:tb] is_a: GO:0048598 ! embryonic morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001844 ! cochlea +intersection_of: RO:0002298 UBERON:0001844 ! results in morphogenesis of cochlea relationship: part_of GO:0042472 ! inner ear morphogenesis relationship: part_of GO:0090102 ! cochlea development -relationship: results_in_morphogenesis_of UBERON:0001844 ! cochlea +relationship: RO:0002298 UBERON:0001844 ! results in morphogenesis of cochlea created_by: tb creation_date: 2009-11-18T11:45:11Z @@ -109844,8 +109288,8 @@ synonym: "regulation of actin cytoskeleton organisation by cell-cell adhesion" E is_a: GO:0032956 ! regulation of actin cytoskeleton organization is_a: GO:0098609 ! cell-cell adhesion intersection_of: GO:0098609 ! cell-cell adhesion -intersection_of: regulates GO:0030036 ! actin cytoskeleton organization -relationship: regulates GO:0030036 ! actin cytoskeleton organization +intersection_of: RO:0002211 GO:0030036 ! regulates (processual) actin cytoskeleton organization +relationship: RO:0002211 GO:0030036 ! regulates (processual) actin cytoskeleton organization created_by: tb creation_date: 2009-12-08T02:05:00Z @@ -109859,8 +109303,8 @@ synonym: "establishment of protein localization in membrane" EXACT [] is_a: GO:0045184 ! establishment of protein localization is_a: GO:0051668 ! localization within membrane intersection_of: GO:0045184 ! establishment of protein localization -intersection_of: has_target_end_location GO:0016020 ! membrane -relationship: has_target_end_location GO:0016020 ! membrane +intersection_of: RO:0002339 GO:0016020 ! has target end location membrane +relationship: RO:0002339 GO:0016020 ! has target end location membrane created_by: tb creation_date: 2009-12-08T03:18:51Z @@ -109874,8 +109318,8 @@ is_a: GO:0044087 ! regulation of cellular component biogenesis is_a: GO:0046890 ! regulation of lipid biosynthetic process is_a: GO:1905038 ! regulation of membrane lipid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030148 ! sphingolipid biosynthetic process -relationship: regulates GO:0030148 ! sphingolipid biosynthetic process +intersection_of: RO:0002211 GO:0030148 ! regulates (processual) sphingolipid biosynthetic process +relationship: RO:0002211 GO:0030148 ! regulates (processual) sphingolipid biosynthetic process created_by: tb creation_date: 2009-12-08T03:25:49Z @@ -109884,12 +109328,11 @@ id: GO:0090154 name: positive regulation of sphingolipid biosynthetic process namespace: biological_process def: "Any process that increases the rate, frequency or extent of sphingolipid biosynthesis. Sphingolipid biosynthesis is the chemical reactions and pathways resulting in the formation of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid)." [GOC:ascb_2009, GOC:dph, GOC:tb] -is_a: GO:0031328 ! positive regulation of cellular biosynthetic process is_a: GO:0046889 ! positive regulation of lipid biosynthetic process is_a: GO:0090153 ! regulation of sphingolipid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030148 ! sphingolipid biosynthetic process -relationship: positively_regulates GO:0030148 ! sphingolipid biosynthetic process +intersection_of: RO:0002213 GO:0030148 ! positively regulates sphingolipid biosynthetic process +relationship: RO:0002213 GO:0030148 ! positively regulates sphingolipid biosynthetic process created_by: tb creation_date: 2009-12-08T03:27:33Z @@ -109900,12 +109343,11 @@ namespace: biological_process alt_id: GO:0090157 def: "Any process that decreases the rate, frequency or extent of sphingolipid biosynthesis. Sphingolipid biosynthesis is the chemical reactions and pathways resulting in the formation of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid)." [GOC:ascb_2009, GOC:dph, GOC:tb] synonym: "negative regulation of sphingolipid biosynthesis involved in cellular sphingolipid homeostasis" RELATED [] -is_a: GO:0031327 ! negative regulation of cellular biosynthetic process is_a: GO:0051055 ! negative regulation of lipid biosynthetic process is_a: GO:0090153 ! regulation of sphingolipid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030148 ! sphingolipid biosynthetic process -relationship: negatively_regulates GO:0030148 ! sphingolipid biosynthetic process +intersection_of: RO:0002212 GO:0030148 ! negatively regulates sphingolipid biosynthetic process +relationship: RO:0002212 GO:0030148 ! negatively regulates sphingolipid biosynthetic process created_by: tb creation_date: 2009-12-08T03:33:39Z @@ -109918,8 +109360,8 @@ synonym: "cellular sphingolipid homeostasis" EXACT [] is_a: GO:0055082 ! intracellular chemical homeostasis is_a: GO:0055088 ! lipid homeostasis intersection_of: GO:0019725 ! cellular homeostasis -intersection_of: regulates_levels_of CHEBI:26739 ! sphingolipid -relationship: regulates_levels_of CHEBI:26739 ! sphingolipid +intersection_of: RO:0002332 CHEBI:26739 ! regulates levels of sphingolipid +relationship: RO:0002332 CHEBI:26739 ! regulates levels of sphingolipid created_by: tb creation_date: 2009-12-08T08:21:36Z @@ -109932,12 +109374,12 @@ is_a: GO:0006896 ! Golgi to vacuole transport is_a: GO:0007041 ! lysosomal transport is_a: GO:0016482 ! cytosolic transport intersection_of: GO:0016192 ! vesicle-mediated transport -intersection_of: has_target_end_location GO:0005764 ! lysosome -intersection_of: has_target_start_location GO:0005794 ! Golgi apparatus -intersection_of: occurs_in GO:0005829 ! cytosol -relationship: has_target_end_location GO:0005764 ! lysosome -relationship: has_target_start_location GO:0005794 ! Golgi apparatus -relationship: occurs_in GO:0005829 ! cytosol +intersection_of: BFO:0000066 GO:0005829 ! occurs in cytosol +intersection_of: RO:0002338 GO:0005794 ! has target start location Golgi apparatus +intersection_of: RO:0002339 GO:0005764 ! has target end location lysosome +relationship: BFO:0000066 GO:0005829 ! occurs in cytosol +relationship: RO:0002338 GO:0005794 ! has target start location Golgi apparatus +relationship: RO:0002339 GO:0005764 ! has target end location lysosome created_by: tb creation_date: 2009-12-08T08:35:13Z @@ -109948,8 +109390,8 @@ namespace: biological_process def: "The specification and formation of anisotropic intracellular organization of an epithelial cell." [GOC:ascb_2009, GOC:dph, GOC:tb] is_a: GO:0030010 ! establishment of cell polarity intersection_of: GO:0030010 ! establishment of cell polarity -intersection_of: occurs_in CL:0000066 ! epithelial cell -relationship: occurs_in CL:0000066 ! epithelial cell +intersection_of: BFO:0000066 CL:0000066 ! occurs in epithelial cell +relationship: BFO:0000066 CL:0000066 ! occurs in epithelial cell created_by: tb creation_date: 2009-12-08T08:58:27Z @@ -109962,9 +109404,9 @@ synonym: "Golgi apparatus disassembly" EXACT [] is_a: GO:0007030 ! Golgi organization is_a: GO:1903008 ! organelle disassembly intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0005794 ! Golgi apparatus +intersection_of: RO:0002590 GO:0005794 ! results in disassembly of Golgi apparatus relationship: part_of GO:0048313 ! Golgi inheritance -relationship: results_in_disassembly_of GO:0005794 ! Golgi apparatus +relationship: RO:0002590 GO:0005794 ! results in disassembly of Golgi apparatus created_by: tb creation_date: 2009-12-08T09:15:11Z @@ -109987,8 +109429,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency or extent of Golgi inheritance. Golgi inheritance is the partitioning of Golgi apparatus between daughter cells at cell division." [GOC:ascb_2009, GOC:dph, GOC:tb] is_a: GO:1903358 ! regulation of Golgi organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048313 ! Golgi inheritance -relationship: regulates GO:0048313 ! Golgi inheritance +intersection_of: RO:0002211 GO:0048313 ! regulates (processual) Golgi inheritance +relationship: RO:0002211 GO:0048313 ! regulates (processual) Golgi inheritance created_by: tb creation_date: 2009-12-11T10:21:59Z @@ -109999,9 +109441,9 @@ namespace: biological_process def: "The process in which the structures of a chondrocyte are generated and organized. This process occurs while the initially relatively unspecialized cell is acquiring the specialized features of a chondrocyte." [GOC:ascb_2009, GOC:dph, GOC:tb] is_a: GO:0000902 ! cell morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_maturation_of CL:0000138 ! chondrocyte +intersection_of: RO:0002299 CL:0000138 ! results in maturation of chondrocyte relationship: part_of GO:0002063 ! chondrocyte development -relationship: results_in_maturation_of CL:0000138 ! chondrocyte +relationship: RO:0002299 CL:0000138 ! results in maturation of chondrocyte created_by: tb creation_date: 2009-12-11T10:36:02Z @@ -110013,8 +109455,8 @@ def: "The joining of two lipid bilayers to form a single organelle membrane." [G is_a: GO:0048284 ! organelle fusion is_a: GO:0061025 ! membrane fusion intersection_of: GO:0061025 ! membrane fusion -intersection_of: results_in_fusion_of GO:0031090 ! organelle membrane -relationship: results_in_fusion_of GO:0031090 ! organelle membrane +intersection_of: RO:0012008 GO:0031090 ! results in fusion of organelle membrane +relationship: RO:0012008 GO:0031090 ! results in fusion of organelle membrane created_by: tb creation_date: 2009-12-11T11:44:58Z @@ -110026,8 +109468,8 @@ def: "Any process that modulates the rate, frequency or extent of kidney develop synonym: "regulation of nephrogenesis" RELATED [GOC:dph, GOC:tb] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001822 ! kidney development -relationship: regulates GO:0001822 ! kidney development +intersection_of: RO:0002211 GO:0001822 ! regulates (processual) kidney development +relationship: RO:0002211 GO:0001822 ! regulates (processual) kidney development created_by: tb creation_date: 2009-12-18T10:50:56Z @@ -110041,8 +109483,8 @@ is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:0090183 ! regulation of kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001822 ! kidney development -relationship: positively_regulates GO:0001822 ! kidney development +intersection_of: RO:0002213 GO:0001822 ! positively regulates kidney development +relationship: RO:0002213 GO:0001822 ! positively regulates kidney development created_by: tb creation_date: 2009-12-18T10:52:01Z @@ -110056,8 +109498,8 @@ is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:0090183 ! regulation of kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001822 ! kidney development -relationship: negatively_regulates GO:0001822 ! kidney development +intersection_of: RO:0002212 GO:0001822 ! negatively regulates kidney development +relationship: RO:0002212 GO:0001822 ! negatively regulates kidney development created_by: tb creation_date: 2009-12-18T10:58:45Z @@ -110071,8 +109513,8 @@ is_a: GO:0090183 ! regulation of kidney development is_a: GO:1905330 ! regulation of morphogenesis of an epithelium is_a: GO:2000027 ! regulation of animal organ morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001658 ! branching involved in ureteric bud morphogenesis -relationship: regulates GO:0001658 ! branching involved in ureteric bud morphogenesis +intersection_of: RO:0002211 GO:0001658 ! regulates (processual) branching involved in ureteric bud morphogenesis +relationship: RO:0002211 GO:0001658 ! regulates (processual) branching involved in ureteric bud morphogenesis created_by: tb creation_date: 2009-12-18T11:11:17Z @@ -110085,8 +109527,8 @@ is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:0090189 ! regulation of branching involved in ureteric bud morphogenesis is_a: GO:1905332 ! positive regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001658 ! branching involved in ureteric bud morphogenesis -relationship: positively_regulates GO:0001658 ! branching involved in ureteric bud morphogenesis +intersection_of: RO:0002213 GO:0001658 ! positively regulates branching involved in ureteric bud morphogenesis +relationship: RO:0002213 GO:0001658 ! positively regulates branching involved in ureteric bud morphogenesis created_by: tb creation_date: 2009-12-18T11:11:17Z @@ -110099,8 +109541,8 @@ is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:0090189 ! regulation of branching involved in ureteric bud morphogenesis is_a: GO:1905331 ! negative regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001658 ! branching involved in ureteric bud morphogenesis -relationship: negatively_regulates GO:0001658 ! branching involved in ureteric bud morphogenesis +intersection_of: RO:0002212 GO:0001658 ! negatively regulates branching involved in ureteric bud morphogenesis +relationship: RO:0002212 GO:0001658 ! negatively regulates branching involved in ureteric bud morphogenesis created_by: tb creation_date: 2009-12-18T11:11:17Z @@ -110111,9 +109553,9 @@ namespace: biological_process def: "Any process that modulates the rate, frequency or extent of glomerulus development, the progression of the glomerulus over time from its initial formation until its mature state. The glomerulus is a capillary tuft surrounded by Bowman's capsule in nephrons of the vertebrate kidney." [GOC:dph, GOC:tb, GOC:yaf] is_a: GO:0090183 ! regulation of kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032835 ! glomerulus development -relationship: regulates GO:0001822 ! kidney development -relationship: regulates GO:0032835 ! glomerulus development +intersection_of: RO:0002211 GO:0032835 ! regulates (processual) glomerulus development +relationship: RO:0002211 GO:0001822 ! regulates (processual) kidney development +relationship: RO:0002211 GO:0032835 ! regulates (processual) glomerulus development created_by: tb creation_date: 2009-12-18T11:17:13Z @@ -110125,8 +109567,8 @@ def: "Any process that increases the rate, frequency or extent of glomerulus dev is_a: GO:0090184 ! positive regulation of kidney development is_a: GO:0090192 ! regulation of glomerulus development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032835 ! glomerulus development -relationship: positively_regulates GO:0032835 ! glomerulus development +intersection_of: RO:0002213 GO:0032835 ! positively regulates glomerulus development +relationship: RO:0002213 GO:0032835 ! positively regulates glomerulus development created_by: tb creation_date: 2009-12-18T11:17:13Z @@ -110138,8 +109580,8 @@ def: "Any process that decreases the rate, frequency or extent of glomerulus dev is_a: GO:0090185 ! negative regulation of kidney development is_a: GO:0090192 ! regulation of glomerulus development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032835 ! glomerulus development -relationship: negatively_regulates GO:0032835 ! glomerulus development +intersection_of: RO:0002212 GO:0032835 ! negatively regulates glomerulus development +relationship: RO:0002212 GO:0032835 ! negatively regulates glomerulus development created_by: tb creation_date: 2009-12-18T11:17:13Z @@ -110150,9 +109592,9 @@ namespace: biological_process def: "The increase in size or mass of the spongiotrophoblast layer of the placenta where the increase in size or mass contributes to the progression of that layer over time from its formation to its mature state." [GOC:dph, GOC:tb] is_a: GO:0048589 ! developmental growth intersection_of: GO:0048589 ! developmental growth -intersection_of: results_in_morphogenesis_of UBERON:0004021 ! spongiotrophoblast layer +intersection_of: RO:0002298 UBERON:0004021 ! results in morphogenesis of spongiotrophoblast layer relationship: part_of GO:0060712 ! spongiotrophoblast layer development -relationship: results_in_morphogenesis_of UBERON:0004021 ! spongiotrophoblast layer +relationship: RO:0002298 UBERON:0004021 ! results in morphogenesis of spongiotrophoblast layer created_by: tb creation_date: 2010-01-08T12:10:44Z @@ -110190,8 +109632,8 @@ is_a: GO:0048580 ! regulation of post-embryonic development intersection_of: GO:0042127 ! regulation of cell population proliferation intersection_of: part_of GO:0007476 ! imaginal disc-derived wing morphogenesis relationship: part_of GO:0007476 ! imaginal disc-derived wing morphogenesis -relationship: regulates GO:0009791 ! post-embryonic development -relationship: regulates GO:0090255 ! cell proliferation involved in imaginal disc-derived wing morphogenesis +relationship: RO:0002211 GO:0009791 ! regulates (processual) post-embryonic development +relationship: RO:0002211 GO:0090255 ! regulates (processual) cell proliferation involved in imaginal disc-derived wing morphogenesis created_by: tb creation_date: 2010-01-22T11:40:46Z @@ -110202,8 +109644,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a muscle system process, a multicellular organismal process carried out by any of the organs or tissues in a muscle system." [GOC:dph, GOC:tb] is_a: GO:0044057 ! regulation of system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003012 ! muscle system process -relationship: regulates GO:0003012 ! muscle system process +intersection_of: RO:0002211 GO:0003012 ! regulates (processual) muscle system process +relationship: RO:0002211 GO:0003012 ! regulates (processual) muscle system process created_by: tb creation_date: 2010-02-03T11:48:13Z @@ -110214,8 +109656,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency, extent of the regulated release of somatostatin from secretory granules in the D cells of the pancreas." [GOC:BHF] is_a: GO:0090276 ! regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070253 ! somatostatin secretion -relationship: regulates GO:0070253 ! somatostatin secretion +intersection_of: RO:0002211 GO:0070253 ! regulates (processual) somatostatin secretion +relationship: RO:0002211 GO:0070253 ! regulates (processual) somatostatin secretion created_by: tb creation_date: 2010-02-05T02:54:14Z @@ -110227,8 +109669,8 @@ def: "Any process that increases the rate, frequency, extent of the regulated re is_a: GO:0090273 ! regulation of somatostatin secretion is_a: GO:0090277 ! positive regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070253 ! somatostatin secretion -relationship: positively_regulates GO:0070253 ! somatostatin secretion +intersection_of: RO:0002213 GO:0070253 ! positively regulates somatostatin secretion +relationship: RO:0002213 GO:0070253 ! positively regulates somatostatin secretion created_by: tb creation_date: 2010-02-05T02:54:14Z @@ -110240,8 +109682,8 @@ def: "Any process that decreases the rate, frequency, extent of the regulated re is_a: GO:0090273 ! regulation of somatostatin secretion is_a: GO:0090278 ! negative regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070253 ! somatostatin secretion -relationship: negatively_regulates GO:0070253 ! somatostatin secretion +intersection_of: RO:0002212 GO:0070253 ! negatively regulates somatostatin secretion +relationship: RO:0002212 GO:0070253 ! negatively regulates somatostatin secretion created_by: tb creation_date: 2010-02-05T02:54:14Z @@ -110253,8 +109695,8 @@ def: "Any process that modulates the rate, frequency, or extent of the regulated is_a: GO:0002791 ! regulation of peptide secretion is_a: GO:0046883 ! regulation of hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030072 ! peptide hormone secretion -relationship: regulates GO:0030072 ! peptide hormone secretion +intersection_of: RO:0002211 GO:0030072 ! regulates (processual) peptide hormone secretion +relationship: RO:0002211 GO:0030072 ! regulates (processual) peptide hormone secretion created_by: tb creation_date: 2010-02-05T02:56:39Z @@ -110267,8 +109709,8 @@ is_a: GO:0002793 ! positive regulation of peptide secretion is_a: GO:0046887 ! positive regulation of hormone secretion is_a: GO:0090276 ! regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030072 ! peptide hormone secretion -relationship: positively_regulates GO:0030072 ! peptide hormone secretion +intersection_of: RO:0002213 GO:0030072 ! positively regulates peptide hormone secretion +relationship: RO:0002213 GO:0030072 ! positively regulates peptide hormone secretion created_by: tb creation_date: 2010-02-05T02:56:39Z @@ -110281,8 +109723,8 @@ is_a: GO:0002792 ! negative regulation of peptide secretion is_a: GO:0046888 ! negative regulation of hormone secretion is_a: GO:0090276 ! regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030072 ! peptide hormone secretion -relationship: negatively_regulates GO:0030072 ! peptide hormone secretion +intersection_of: RO:0002212 GO:0030072 ! negatively regulates peptide hormone secretion +relationship: RO:0002212 GO:0030072 ! negatively regulates peptide hormone secretion created_by: tb creation_date: 2010-02-05T02:56:39Z @@ -110294,8 +109736,8 @@ def: "Any process that modulates the rate, frequency, or extent of the directed synonym: "regulation of transmembrane calcium influx" RELATED [GOC:tb] is_a: GO:0051924 ! regulation of calcium ion transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070509 ! calcium ion import -relationship: regulates GO:0070509 ! calcium ion import +intersection_of: RO:0002211 GO:0070509 ! regulates (processual) calcium ion import +relationship: RO:0002211 GO:0070509 ! regulates (processual) calcium ion import created_by: tb creation_date: 2010-02-08T05:11:20Z @@ -110308,8 +109750,8 @@ synonym: "positive regulation of transmembrane calcium influx" RELATED [GOC:tb] is_a: GO:0051928 ! positive regulation of calcium ion transport is_a: GO:0090279 ! regulation of calcium ion import intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070509 ! calcium ion import -relationship: positively_regulates GO:0070509 ! calcium ion import +intersection_of: RO:0002213 GO:0070509 ! positively regulates calcium ion import +relationship: RO:0002213 GO:0070509 ! positively regulates calcium ion import created_by: tb creation_date: 2010-02-08T05:11:20Z @@ -110322,8 +109764,8 @@ synonym: "negative regulation of transmembrane calcium influx" RELATED [GOC:tb] is_a: GO:0051926 ! negative regulation of calcium ion transport is_a: GO:0090279 ! regulation of calcium ion import intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070509 ! calcium ion import -relationship: negatively_regulates GO:0070509 ! calcium ion import +intersection_of: RO:0002212 GO:0070509 ! negatively regulates calcium ion import +relationship: RO:0002212 GO:0070509 ! negatively regulates calcium ion import created_by: tb creation_date: 2010-02-08T05:11:20Z @@ -110334,8 +109776,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of the multiplication or reproduction of osteoclasts, resulting in the expansion of an osteoclast cell population." [GOC:tb] is_a: GO:0070663 ! regulation of leukocyte proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002158 ! osteoclast proliferation -relationship: regulates GO:0002158 ! osteoclast proliferation +intersection_of: RO:0002211 GO:0002158 ! regulates (processual) osteoclast proliferation +relationship: RO:0002211 GO:0002158 ! regulates (processual) osteoclast proliferation created_by: tb creation_date: 2010-02-18T03:11:03Z @@ -110347,8 +109789,8 @@ def: "Any process that increases the rate, frequency, or extent of the multiplic is_a: GO:0070665 ! positive regulation of leukocyte proliferation is_a: GO:0090289 ! regulation of osteoclast proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002158 ! osteoclast proliferation -relationship: positively_regulates GO:0002158 ! osteoclast proliferation +intersection_of: RO:0002213 GO:0002158 ! positively regulates osteoclast proliferation +relationship: RO:0002213 GO:0002158 ! positively regulates osteoclast proliferation created_by: tb creation_date: 2010-02-18T03:11:03Z @@ -110360,8 +109802,8 @@ def: "Any process that decreases the rate, frequency, or extent of the multiplic is_a: GO:0070664 ! negative regulation of leukocyte proliferation is_a: GO:0090289 ! regulation of osteoclast proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002158 ! osteoclast proliferation -relationship: negatively_regulates GO:0002158 ! osteoclast proliferation +intersection_of: RO:0002212 GO:0002158 ! negatively regulates osteoclast proliferation +relationship: RO:0002212 GO:0002158 ! negatively regulates osteoclast proliferation created_by: tb creation_date: 2010-02-18T03:11:03Z @@ -110373,9 +109815,9 @@ def: "Any process that modulates the rate, frequency, or extent of neural crest is_a: GO:0010717 ! regulation of epithelial to mesenchymal transition is_a: GO:0022603 ! regulation of anatomical structure morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014029 ! neural crest formation -relationship: regulates GO:0009653 ! anatomical structure morphogenesis -relationship: regulates GO:0014029 ! neural crest formation +intersection_of: RO:0002211 GO:0014029 ! regulates (processual) neural crest formation +relationship: RO:0002211 GO:0009653 ! regulates (processual) anatomical structure morphogenesis +relationship: RO:0002211 GO:0014029 ! regulates (processual) neural crest formation created_by: tb creation_date: 2010-03-12T04:08:26Z @@ -110387,8 +109829,8 @@ def: "Any process that increases the rate, frequency, or extent of neural crest is_a: GO:0010718 ! positive regulation of epithelial to mesenchymal transition is_a: GO:0090299 ! regulation of neural crest formation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014029 ! neural crest formation -relationship: positively_regulates GO:0014029 ! neural crest formation +intersection_of: RO:0002213 GO:0014029 ! positively regulates neural crest formation +relationship: RO:0002213 GO:0014029 ! positively regulates neural crest formation created_by: tb creation_date: 2010-03-12T04:08:26Z @@ -110400,8 +109842,8 @@ def: "Any process that decreases the rate, frequency, or extent of neural crest is_a: GO:0010719 ! negative regulation of epithelial to mesenchymal transition is_a: GO:0090299 ! regulation of neural crest formation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014029 ! neural crest formation -relationship: negatively_regulates GO:0014029 ! neural crest formation +intersection_of: RO:0002212 GO:0014029 ! negatively regulates neural crest formation +relationship: RO:0002212 GO:0014029 ! negatively regulates neural crest formation created_by: tb creation_date: 2010-03-12T04:08:26Z @@ -110413,8 +109855,8 @@ def: "Any process that increases the rate, frequency, or extent of the series of is_a: GO:0061041 ! regulation of wound healing is_a: GO:1903036 ! positive regulation of response to wounding intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042060 ! wound healing -relationship: positively_regulates GO:0042060 ! wound healing +intersection_of: RO:0002213 GO:0042060 ! positively regulates wound healing +relationship: RO:0002213 GO:0042060 ! positively regulates wound healing created_by: tb creation_date: 2010-03-22T02:12:03Z @@ -110428,8 +109870,8 @@ subset: gocheck_do_not_annotate is_a: GO:0006139 ! nucleobase-containing compound metabolic process is_a: GO:0043170 ! macromolecule metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:33696 ! nucleic acid -relationship: has_primary_input_or_output CHEBI:33696 ! nucleic acid +intersection_of: RO:0004007 CHEBI:33696 ! has primary input or output nucleic acid +relationship: RO:0004007 CHEBI:33696 ! has primary input or output nucleic acid property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26133" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27052" xsd:anyURI created_by: tb @@ -110444,8 +109886,8 @@ is_a: GO:0032388 ! positive regulation of intracellular transport is_a: GO:0033157 ! regulation of intracellular protein transport is_a: GO:0051222 ! positive regulation of protein transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006886 ! intracellular protein transport -relationship: positively_regulates GO:0006886 ! intracellular protein transport +intersection_of: RO:0002213 GO:0006886 ! positively regulates intracellular protein transport +relationship: RO:0002213 GO:0006886 ! positively regulates intracellular protein transport created_by: tb creation_date: 2010-04-16T03:45:07Z @@ -110458,9 +109900,9 @@ is_a: GO:0032387 ! negative regulation of intracellular transport is_a: GO:0033157 ! regulation of intracellular protein transport is_a: GO:0051224 ! negative regulation of protein transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006886 ! intracellular protein transport -relationship: negatively_regulates GO:0006886 ! intracellular protein transport -relationship: negatively_regulates GO:0008104 ! protein localization +intersection_of: RO:0002212 GO:0006886 ! negatively regulates intracellular protein transport +relationship: RO:0002212 GO:0006886 ! negatively regulates intracellular protein transport +relationship: RO:0002212 GO:0008104 ! negatively regulates protein localization created_by: tb creation_date: 2010-04-16T03:45:07Z @@ -110472,8 +109914,8 @@ def: "Any process that modulates the frequency, rate, or extent of the self-prop is_a: GO:0040012 ! regulation of locomotion is_a: GO:0050795 ! regulation of behavior intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0031987 ! locomotion involved in locomotory behavior -relationship: regulates GO:0031987 ! locomotion involved in locomotory behavior +intersection_of: RO:0002211 GO:0031987 ! regulates (processual) locomotion involved in locomotory behavior +relationship: RO:0002211 GO:0031987 ! regulates (processual) locomotion involved in locomotory behavior created_by: tb creation_date: 2010-05-14T10:24:29Z @@ -110486,8 +109928,8 @@ is_a: GO:0040017 ! positive regulation of locomotion is_a: GO:0048520 ! positive regulation of behavior is_a: GO:0090325 ! regulation of locomotion involved in locomotory behavior intersection_of: GO:0050789 ! regulation of biological process -intersection_of: positively_regulates GO:0031987 ! locomotion involved in locomotory behavior -relationship: positively_regulates GO:0031987 ! locomotion involved in locomotory behavior +intersection_of: RO:0002213 GO:0031987 ! positively regulates locomotion involved in locomotory behavior +relationship: RO:0002213 GO:0031987 ! positively regulates locomotion involved in locomotory behavior created_by: tb creation_date: 2010-05-14T10:26:58Z @@ -110500,8 +109942,8 @@ is_a: GO:0040013 ! negative regulation of locomotion is_a: GO:0048521 ! negative regulation of behavior is_a: GO:0090325 ! regulation of locomotion involved in locomotory behavior intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0031987 ! locomotion involved in locomotory behavior -relationship: negatively_regulates GO:0031987 ! locomotion involved in locomotory behavior +intersection_of: RO:0002212 GO:0031987 ! negatively regulates locomotion involved in locomotory behavior +relationship: RO:0002212 GO:0031987 ! negatively regulates locomotion involved in locomotory behavior created_by: tb creation_date: 2010-05-14T10:26:58Z @@ -110514,8 +109956,8 @@ is_a: GO:0031644 ! regulation of nervous system process is_a: GO:0048583 ! regulation of response to stimulus is_a: GO:0050795 ! regulation of behavior intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008355 ! olfactory learning -relationship: regulates GO:0008355 ! olfactory learning +intersection_of: RO:0002211 GO:0008355 ! regulates (processual) olfactory learning +relationship: RO:0002211 GO:0008355 ! regulates (processual) olfactory learning created_by: tb creation_date: 2010-05-14T10:37:22Z @@ -110526,8 +109968,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of brown fat cell differentiation. Brown fat cell differentiation is the process in which a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria." [GOC:tb] is_a: GO:0045598 ! regulation of fat cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0050873 ! brown fat cell differentiation -relationship: regulates GO:0050873 ! brown fat cell differentiation +intersection_of: RO:0002211 GO:0050873 ! regulates (processual) brown fat cell differentiation +relationship: RO:0002211 GO:0050873 ! regulates (processual) brown fat cell differentiation created_by: tb creation_date: 2010-06-01T03:16:57Z @@ -110539,8 +109981,8 @@ def: "Any process that increases the rate, frequency, or extent of brown fat cel is_a: GO:0045600 ! positive regulation of fat cell differentiation is_a: GO:0090335 ! regulation of brown fat cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0050873 ! brown fat cell differentiation -relationship: positively_regulates GO:0050873 ! brown fat cell differentiation +intersection_of: RO:0002213 GO:0050873 ! positively regulates brown fat cell differentiation +relationship: RO:0002213 GO:0050873 ! positively regulates brown fat cell differentiation created_by: tb creation_date: 2010-06-01T03:19:26Z @@ -110554,8 +109996,8 @@ synonym: "negative regulation of excitatory post-synaptic membrane potential" EX synonym: "reduction of excitatory postsynaptic membrane potential" EXACT [GOC:bf] is_a: GO:0065007 ! biological regulation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060079 ! excitatory postsynaptic potential -relationship: negatively_regulates GO:0060079 ! excitatory postsynaptic potential +intersection_of: RO:0002212 GO:0060079 ! negatively regulates excitatory postsynaptic potential +relationship: RO:0002212 GO:0060079 ! negatively regulates excitatory postsynaptic potential created_by: tb creation_date: 2010-12-15T01:43:12Z @@ -110567,8 +110009,8 @@ def: "The chemical reactions and pathways resulting in the biosynthesis of deoxy is_a: GO:0009058 ! biosynthetic process is_a: GO:0019637 ! organophosphate metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:25710 ! organophosphorus compound -relationship: has_primary_output CHEBI:25710 ! organophosphorus compound +intersection_of: RO:0004008 CHEBI:25710 ! has primary output organophosphorus compound +relationship: RO:0004008 CHEBI:25710 ! has primary output organophosphorus compound created_by: tb creation_date: 2011-02-26T02:22:41Z @@ -110579,8 +110021,8 @@ namespace: biological_process def: "The epithelial cell differentiation process in which a relatively unspecialized cell acquires specialized features of an acinar cell, a secretory cell that is grouped together with other cells of the same type to form grape-shaped clusters known as acini." [GOC:dph, GOC:tb] is_a: GO:0002067 ! glandular epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000622 ! acinar cell -relationship: results_in_acquisition_of_features_of CL:0000622 ! acinar cell +intersection_of: RO:0002315 CL:0000622 ! results in acquisition of features of acinar cell +relationship: RO:0002315 CL:0000622 ! results in acquisition of features of acinar cell created_by: tb creation_date: 2012-05-04T09:24:48Z @@ -110592,8 +110034,8 @@ def: "A process in which a protein is transported to, or maintained at, a locati synonym: "protein localization in nuclear envelope" EXACT [] is_a: GO:0034504 ! protein localization to nucleus intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005635 ! nuclear envelope -relationship: has_target_end_location GO:0005635 ! nuclear envelope +intersection_of: RO:0002339 GO:0005635 ! has target end location nuclear envelope +relationship: RO:0002339 GO:0005635 ! has target end location nuclear envelope created_by: tb creation_date: 2012-07-30T01:50:41Z @@ -110608,14 +110050,14 @@ is_a: GO:0032975 ! amino acid transmembrane import into vacuole is_a: GO:0071705 ! nitrogen compound transport is_a: GO:1905039 ! carboxylic acid transmembrane transport intersection_of: GO:0015800 ! acidic amino acid transport -intersection_of: has_primary_input CHEBI:14321 ! glutamate(1-) -intersection_of: has_target_end_location GO:0005775 ! vacuolar lumen -intersection_of: has_target_start_location GO:0005829 ! cytosol -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:14321 ! glutamate(1-) -relationship: has_target_end_location GO:0005775 ! vacuolar lumen -relationship: has_target_start_location GO:0005829 ! cytosol -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002338 GO:0005829 ! has target start location cytosol +intersection_of: RO:0002339 GO:0005775 ! has target end location vacuolar lumen +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:14321 ! has primary input glutamate(1-) +relationship: RO:0002338 GO:0005829 ! has target start location cytosol +relationship: RO:0002339 GO:0005775 ! has target end location vacuolar lumen +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:14321 ! has primary input glutamate(1-) created_by: tb creation_date: 2012-09-24T14:12:46Z @@ -110628,8 +110070,8 @@ synonym: "cellular glutamate homeostasis" EXACT [] synonym: "glutamate homeostasis" EXACT [] is_a: GO:0055082 ! intracellular chemical homeostasis intersection_of: GO:0019725 ! cellular homeostasis -intersection_of: regulates_levels_of CHEBI:14321 ! glutamate(1-) -relationship: regulates_levels_of CHEBI:14321 ! glutamate(1-) +intersection_of: RO:0002332 CHEBI:14321 ! regulates levels of glutamate(1-) +relationship: RO:0002332 CHEBI:14321 ! regulates levels of glutamate(1-) property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24220" xsd:anyURI created_by: tb creation_date: 2012-09-24T14:22:02Z @@ -110641,12 +110083,12 @@ namespace: biological_process def: "The directed movement of catecholamine into a cell." [GOC:dph, GOC:tb] is_a: GO:0051937 ! catecholamine transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:33567 ! catecholamine -intersection_of: has_target_end_location GO:0005622 ! intracellular anatomical structure -intersection_of: has_target_start_location GO:0005576 ! extracellular region -relationship: has_primary_input CHEBI:33567 ! catecholamine -relationship: has_target_end_location GO:0005622 ! intracellular anatomical structure -relationship: has_target_start_location GO:0005576 ! extracellular region +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005622 ! has target end location intracellular anatomical structure +intersection_of: RO:0004009 CHEBI:33567 ! has primary input catecholamine +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005622 ! has target end location intracellular anatomical structure +relationship: RO:0004009 CHEBI:33567 ! has primary input catecholamine created_by: tb creation_date: 2012-10-17T11:06:17Z @@ -110657,12 +110099,12 @@ namespace: biological_process def: "The directed movement of dopamine into a cell." [GOC:dph, GOC:tb] is_a: GO:0015872 ! dopamine transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:59905 ! dopaminium(1+) -intersection_of: has_target_end_location GO:0005622 ! intracellular anatomical structure -intersection_of: has_target_start_location GO:0005576 ! extracellular region -relationship: has_primary_input CHEBI:59905 ! dopaminium(1+) -relationship: has_target_end_location GO:0005622 ! intracellular anatomical structure -relationship: has_target_start_location GO:0005576 ! extracellular region +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005622 ! has target end location intracellular anatomical structure +intersection_of: RO:0004009 CHEBI:59905 ! has primary input dopaminium(1+) +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005622 ! has target end location intracellular anatomical structure +relationship: RO:0004009 CHEBI:59905 ! has primary input dopaminium(1+) created_by: tb creation_date: 2012-10-17T11:12:09Z @@ -110685,8 +110127,8 @@ namespace: biological_process def: "The orderly movement of a mesenchymal cell from one site to another, often during the development of a multicellular organism." [GOC:dph, GOC:tb] is_a: GO:0001667 ! ameboidal-type cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0008019 ! mesenchymal cell -relationship: results_in_movement_of CL:0008019 ! mesenchymal cell +intersection_of: RO:0002565 CL:0008019 ! results in movement of mesenchymal cell +relationship: RO:0002565 CL:0008019 ! results in movement of mesenchymal cell created_by: tb creation_date: 2012-10-17T12:08:17Z @@ -110698,14 +110140,14 @@ def: "The directed movement of L-tyrosine into the vacuole across the vacuolar m is_a: GO:0015828 ! tyrosine transport is_a: GO:0032975 ! amino acid transmembrane import into vacuole intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:58315 ! L-tyrosine zwitterion -intersection_of: has_target_end_location GO:0005775 ! vacuolar lumen -intersection_of: has_target_start_location GO:0005829 ! cytosol -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:58315 ! L-tyrosine zwitterion -relationship: has_target_end_location GO:0005775 ! vacuolar lumen -relationship: has_target_start_location GO:0005829 ! cytosol -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002338 GO:0005829 ! has target start location cytosol +intersection_of: RO:0002339 GO:0005775 ! has target end location vacuolar lumen +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:58315 ! has primary input L-tyrosine zwitterion +relationship: RO:0002338 GO:0005829 ! has target start location cytosol +relationship: RO:0002339 GO:0005775 ! has target end location vacuolar lumen +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:58315 ! has primary input L-tyrosine zwitterion created_by: tb creation_date: 2012-12-14T11:25:52Z @@ -110717,14 +110159,14 @@ def: "The directed movement of L-glutamate into the vacuole across the vacuolar is_a: GO:0015813 ! L-glutamate transmembrane transport is_a: GO:0090454 ! glutamate transmembrane import into vacuole intersection_of: GO:0015800 ! acidic amino acid transport -intersection_of: has_primary_input CHEBI:29985 ! L-glutamate(1-) -intersection_of: has_target_end_location GO:0005775 ! vacuolar lumen -intersection_of: has_target_start_location GO:0005829 ! cytosol -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:29985 ! L-glutamate(1-) -relationship: has_target_end_location GO:0005775 ! vacuolar lumen -relationship: has_target_start_location GO:0005829 ! cytosol -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002338 GO:0005829 ! has target start location cytosol +intersection_of: RO:0002339 GO:0005775 ! has target end location vacuolar lumen +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:29985 ! has primary input L-glutamate(1-) +relationship: RO:0002338 GO:0005829 ! has target start location cytosol +relationship: RO:0002339 GO:0005775 ! has target end location vacuolar lumen +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:29985 ! has primary input L-glutamate(1-) created_by: tb creation_date: 2012-12-14T11:25:52Z @@ -110736,8 +110178,8 @@ def: "The orderly movement of a podocyte from one site to another, often during synonym: "glomerular visceral epithelial cell migration" EXACT [] is_a: GO:0010631 ! epithelial cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000653 ! podocyte -relationship: results_in_movement_of CL:0000653 ! podocyte +intersection_of: RO:0002565 CL:0000653 ! results in movement of podocyte +relationship: RO:0002565 CL:0000653 ! results in movement of podocyte property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23000" xsd:anyURI created_by: tb creation_date: 2013-01-08T11:08:57Z @@ -110759,9 +110201,9 @@ namespace: biological_process def: "Morphogenesis of a sensory organ. A sensory organ is defined as a tissue or set of tissues that work together to receive and transmit signals from external or internal stimuli. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions." [GOC:kmv, ISBN:978-0199210893] is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000020 ! sense organ +intersection_of: RO:0002298 UBERON:0000020 ! results in morphogenesis of sense organ relationship: part_of GO:0007423 ! sensory organ development -relationship: results_in_morphogenesis_of UBERON:0000020 ! sense organ +relationship: RO:0002298 UBERON:0000020 ! results in morphogenesis of sense organ created_by: tb creation_date: 2014-08-22T13:23:20Z @@ -110772,9 +110214,9 @@ namespace: biological_process def: "The processes by which anatomical structures that are only present in the male organism are generated and organized." [GOC:kmv, GOC:tb] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0014403 ! male anatomical structure +intersection_of: RO:0002298 UBERON:0014403 ! results in morphogenesis of male anatomical structure relationship: part_of GO:0046661 ! male sex differentiation -relationship: results_in_morphogenesis_of UBERON:0014403 ! male anatomical structure +relationship: RO:0002298 UBERON:0014403 ! results in morphogenesis of male anatomical structure created_by: tb creation_date: 2014-08-22T13:29:45Z @@ -110786,8 +110228,8 @@ def: "A macromolecular localization process in which RNA is transported to and m synonym: "RNA localisation to nucleus" EXACT [GOC:mah] is_a: GO:0006403 ! RNA localization intersection_of: GO:0006403 ! RNA localization -intersection_of: has_target_end_location GO:0005634 ! nucleus -relationship: has_target_end_location GO:0005634 ! nucleus +intersection_of: RO:0002339 GO:0005634 ! has target end location nucleus +relationship: RO:0002339 GO:0005634 ! has target end location nucleus created_by: tb creation_date: 2016-07-19T17:00:49Z @@ -110844,8 +110286,8 @@ def: "Binding to a ceramide, a class of lipids composed of sphingosine linked to is_a: GO:0033218 ! amide binding is_a: GO:0046625 ! sphingolipid binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:17761 ! ceramide -relationship: has_primary_input CHEBI:17761 ! ceramide +intersection_of: RO:0004009 CHEBI:17761 ! has primary input ceramide +relationship: RO:0004009 CHEBI:17761 ! has primary input ceramide created_by: pr creation_date: 2011-03-09T11:34:09Z @@ -110879,8 +110321,8 @@ comment: Note that dendrites of dendritic cells should not be confused with neur synonym: "dendritic extension" BROAD [] is_a: GO:0120031 ! plasma membrane bounded cell projection assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0097511 ! dendritic cell dendrite -relationship: results_in_assembly_of GO:0097511 ! dendritic cell dendrite +intersection_of: RO:0002588 GO:0097511 ! results in assembly of dendritic cell dendrite +relationship: RO:0002588 GO:0097511 ! results in assembly of dendritic cell dendrite created_by: pr creation_date: 2011-03-31T04:52:53Z @@ -110892,8 +110334,8 @@ def: "The process in which a precursor cell type acquires the specialized featur comment: Note that immunologists typically use the word 'maturation' to refer to dendritic cells undergoing the process that GO describes as 'cell differentiation'. is_a: GO:1903131 ! mononuclear cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000451 ! dendritic cell -relationship: results_in_acquisition_of_features_of CL:0000451 ! dendritic cell +intersection_of: RO:0002315 CL:0000451 ! results in acquisition of features of dendritic cell +relationship: RO:0002315 CL:0000451 ! results in acquisition of features of dendritic cell created_by: pr creation_date: 2011-04-01T10:08:42Z @@ -110905,8 +110347,8 @@ def: "Any apoptotic process in a dendritic cell, a cell of hematopoietic origin, synonym: "dendritic cell apoptosis" NARROW [] is_a: GO:0071887 ! leukocyte apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000451 ! dendritic cell -relationship: occurs_in CL:0000451 ! dendritic cell +intersection_of: BFO:0000066 CL:0000451 ! occurs in dendritic cell +relationship: BFO:0000066 CL:0000451 ! occurs in dendritic cell created_by: pr creation_date: 2011-05-04T02:18:59Z @@ -110919,8 +110361,8 @@ synonym: "motoneuron apoptosis" EXACT [] synonym: "motor neuron apoptosis" NARROW [] is_a: GO:0051402 ! neuron apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000100 ! motor neuron -relationship: occurs_in CL:0000100 ! motor neuron +intersection_of: BFO:0000066 CL:0000100 ! occurs in motor neuron +relationship: BFO:0000066 CL:0000100 ! occurs in motor neuron created_by: pr creation_date: 2011-05-04T02:21:43Z @@ -110934,8 +110376,8 @@ synonym: "pancreatic beta cell apoptosis" EXACT [] synonym: "type B pancreatic cell apoptosis" NARROW [] is_a: GO:1904019 ! epithelial cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000169 ! type B pancreatic cell -relationship: occurs_in CL:0000169 ! type B pancreatic cell +intersection_of: BFO:0000066 CL:0000169 ! occurs in type B pancreatic cell +relationship: BFO:0000066 CL:0000169 ! occurs in type B pancreatic cell created_by: pr creation_date: 2011-05-04T02:24:38Z @@ -110950,8 +110392,8 @@ synonym: "L-glutamate formation" EXACT [] synonym: "L-glutamate synthesis" EXACT [] is_a: GO:0006537 ! glutamate biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:29985 ! L-glutamate(1-) -relationship: has_primary_output CHEBI:29985 ! L-glutamate(1-) +intersection_of: RO:0004008 CHEBI:29985 ! has primary output L-glutamate(1-) +relationship: RO:0004008 CHEBI:29985 ! has primary output L-glutamate(1-) created_by: pr creation_date: 2011-05-24T04:30:38Z @@ -110977,9 +110419,9 @@ def: "The process aimed at the progression of a vascular smooth muscle cell over synonym: "vascular smooth muscle cell development" EXACT [] is_a: GO:0055001 ! muscle cell development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of CL:0000359 ! vascular associated smooth muscle cell +intersection_of: RO:0002296 CL:0000359 ! results in development of vascular associated smooth muscle cell relationship: part_of GO:0035886 ! vascular associated smooth muscle cell differentiation -relationship: results_in_development_of CL:0000359 ! vascular associated smooth muscle cell +relationship: RO:0002296 CL:0000359 ! results in development of vascular associated smooth muscle cell created_by: pr creation_date: 2011-06-20T04:03:08Z @@ -110990,12 +110432,12 @@ namespace: biological_process def: "The process in which any suture between cranial and/or facial bones is generated and organized." [GOC:pr, GOC:sl, Wikipedia:Cranial_sutures, Wikipedia:Head_and_neck_anatomy#Musculoskeletal_system] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0009198 ! craniofacial suture +intersection_of: RO:0002298 UBERON:0009198 ! results in morphogenesis of craniofacial suture relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of GO:0060349 ! bone morphogenesis relationship: part_of GO:1904888 ! cranial skeletal system development -relationship: results_in_morphogenesis_of UBERON:0009198 ! craniofacial suture +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata +relationship: RO:0002298 UBERON:0009198 ! results in morphogenesis of craniofacial suture created_by: pr creation_date: 2011-07-05T02:51:54Z @@ -111007,8 +110449,8 @@ def: "The process in which the frontonasal suture, between frontal and nasal bon synonym: "nasofrontal suture morphogenesis" EXACT [] is_a: GO:0097094 ! craniofacial suture morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0005404 ! frontonasal suture -relationship: results_in_morphogenesis_of UBERON:0005404 ! frontonasal suture +intersection_of: RO:0002298 UBERON:0005404 ! results in morphogenesis of frontonasal suture +relationship: RO:0002298 UBERON:0005404 ! results in morphogenesis of frontonasal suture created_by: pr creation_date: 2011-07-05T02:57:46Z @@ -111019,8 +110461,8 @@ namespace: biological_process def: "The process in which any suture between facial bones is generated and organized." [GOC:pr, GOC:sl, Wikipedia:Cranial_sutures, Wikipedia:Head_and_neck_anatomy#Musculoskeletal_system] is_a: GO:0097094 ! craniofacial suture morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0009199 ! facial suture -relationship: results_in_morphogenesis_of UBERON:0009199 ! facial suture +intersection_of: RO:0002298 UBERON:0009199 ! results in morphogenesis of facial suture +relationship: RO:0002298 UBERON:0009199 ! results in morphogenesis of facial suture created_by: pr creation_date: 2011-07-05T03:06:27Z @@ -111032,8 +110474,8 @@ def: "The process in which the nasal suture is generated and organized." [GOC:pr synonym: "internasal suture morphogenesis" EXACT [] is_a: GO:0097096 ! facial suture morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0009203 ! internasal suture -relationship: results_in_morphogenesis_of UBERON:0009203 ! internasal suture +intersection_of: RO:0002298 UBERON:0009203 ! results in morphogenesis of internasal suture +relationship: RO:0002298 UBERON:0009203 ! results in morphogenesis of internasal suture created_by: pr creation_date: 2011-07-05T03:09:04Z @@ -111047,9 +110489,9 @@ synonym: "post-synaptic membrane assembly" EXACT [] is_a: GO:0001941 ! postsynaptic membrane organization is_a: GO:0071709 ! membrane assembly intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_assembly_of GO:0045211 ! postsynaptic membrane +intersection_of: RO:0002588 GO:0045211 ! results in assembly of postsynaptic membrane relationship: part_of GO:0099068 ! postsynapse assembly -relationship: results_in_assembly_of GO:0045211 ! postsynaptic membrane +relationship: RO:0002588 GO:0045211 ! results in assembly of postsynaptic membrane created_by: pr creation_date: 2011-07-27T01:26:49Z @@ -111061,10 +110503,10 @@ def: "Any process in which a receptor is transported to, and/or maintained at th synonym: "receptor localisation to synapse" EXACT [] is_a: GO:0031503 ! protein-containing complex localization intersection_of: GO:0051179 ! localization -intersection_of: has_primary_input GO:0098802 ! plasma membrane signaling receptor complex -intersection_of: has_target_end_location GO:0045202 ! synapse -relationship: has_primary_input GO:0098802 ! plasma membrane signaling receptor complex -relationship: has_target_end_location GO:0045202 ! synapse +intersection_of: RO:0002339 GO:0045202 ! has target end location synapse +intersection_of: RO:0004009 GO:0098802 ! has primary input plasma membrane signaling receptor complex +relationship: RO:0002339 GO:0045202 ! has target end location synapse +relationship: RO:0004009 GO:0098802 ! has primary input plasma membrane signaling receptor complex created_by: pr creation_date: 2011-07-31T09:20:30Z @@ -111076,8 +110518,8 @@ def: "Any apoptotic process in a mesenchymal cell. A mesenchymal cell is a loose synonym: "mesenchymal cell apoptosis" NARROW [] is_a: GO:0006915 ! apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0008019 ! mesenchymal cell -relationship: occurs_in CL:0008019 ! mesenchymal cell +intersection_of: BFO:0000066 CL:0008019 ! occurs in mesenchymal cell +relationship: BFO:0000066 CL:0008019 ! occurs in mesenchymal cell created_by: pr creation_date: 2011-09-06T02:31:59Z @@ -111088,8 +110530,8 @@ namespace: biological_process def: "The process in which a neuroblast acquires the specialized structural and functional features of a GABAergic neuron." [GOC:kmv, PMID:11517269] is_a: GO:0030182 ! neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000617 ! GABAergic neuron -relationship: results_in_acquisition_of_features_of CL:0000617 ! GABAergic neuron +intersection_of: RO:0002315 CL:0000617 ! results in acquisition of features of GABAergic neuron +relationship: RO:0002315 CL:0000617 ! results in acquisition of features of GABAergic neuron created_by: pr creation_date: 2011-09-14T09:39:11Z @@ -111098,10 +110540,11 @@ id: GO:0097159 name: organic cyclic compound binding namespace: molecular_function def: "Binding to an organic cyclic compound, any molecular entity that contains carbon arranged in a cyclic molecular structure." [GOC:sjw, PMID:7583672] +xref: Reactome:R-HSA-1497796 "BH2 binding can lead to eNOS uncoupling" is_a: GO:0005488 ! binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:33832 ! organic cyclic compound -relationship: has_primary_input CHEBI:33832 ! organic cyclic compound +intersection_of: RO:0004009 CHEBI:33832 ! has primary input organic cyclic compound +relationship: RO:0004009 CHEBI:33832 ! has primary input organic cyclic compound created_by: pr creation_date: 2011-09-23T02:31:01Z @@ -111114,8 +110557,8 @@ synonym: "ammonium ion metabolism" EXACT [] synonym: "ammonium metabolic process" RELATED [] is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:28938 ! ammonium -relationship: has_primary_input_or_output CHEBI:28938 ! ammonium +intersection_of: RO:0004007 CHEBI:28938 ! has primary input or output ammonium +relationship: RO:0004007 CHEBI:28938 ! has primary input or output ammonium created_by: pr creation_date: 2011-09-28T04:21:30Z @@ -111128,8 +110571,8 @@ synonym: "enamel development" EXACT [] is_a: GO:0042475 ! odontogenesis of dentin-containing tooth is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001752 ! enamel -relationship: results_in_formation_of_anatomical_entity UBERON:0001752 ! enamel +intersection_of: RO:0002297 UBERON:0001752 ! results in formation of anatomical entity enamel +relationship: RO:0002297 UBERON:0001752 ! results in formation of anatomical entity enamel created_by: pr creation_date: 2011-11-21T09:01:24Z @@ -111143,8 +110586,8 @@ synonym: "dentine development" EXACT [] is_a: GO:0042475 ! odontogenesis of dentin-containing tooth is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0001751 ! dentine -relationship: results_in_formation_of_anatomical_entity UBERON:0001751 ! dentine +intersection_of: RO:0002297 UBERON:0001751 ! results in formation of anatomical entity dentine +relationship: RO:0002297 UBERON:0001751 ! results in formation of anatomical entity dentine created_by: pr creation_date: 2011-11-21T09:04:17Z @@ -111193,9 +110636,9 @@ synonym: "lysosomal membrane organisation" EXACT [GOC:mah] synonym: "lysosome membrane organization" EXACT [] is_a: GO:0061024 ! membrane organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0005765 ! lysosomal membrane +intersection_of: RO:0002592 GO:0005765 ! results in organization of lysosomal membrane relationship: part_of GO:0007040 ! lysosome organization -relationship: results_in_organization_of GO:0005765 ! lysosomal membrane +relationship: RO:0002592 GO:0005765 ! results in organization of lysosomal membrane created_by: pr creation_date: 2012-01-12T10:16:15Z @@ -111215,8 +110658,8 @@ def: "Any apoptotic process in an oligodendrocyte. Oligodendrocytes belong to a synonym: "oligodendrocyte apoptosis" NARROW [] is_a: GO:0034349 ! glial cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000128 ! oligodendrocyte -relationship: occurs_in CL:0000128 ! oligodendrocyte +intersection_of: BFO:0000066 CL:0000128 ! occurs in oligodendrocyte +relationship: BFO:0000066 CL:0000128 ! occurs in oligodendrocyte created_by: pr creation_date: 2012-03-05T10:51:15Z @@ -111239,8 +110682,8 @@ def: "Any biological process involved in the maintenance of an internal steady s synonym: "ammonia homeostasis" EXACT [] is_a: GO:0098771 ! inorganic ion homeostasis intersection_of: GO:0048878 ! chemical homeostasis -intersection_of: regulates_levels_of CHEBI:28938 ! ammonium -relationship: regulates_levels_of CHEBI:28938 ! ammonium +intersection_of: RO:0002332 CHEBI:28938 ! regulates levels of ammonium +relationship: RO:0002332 CHEBI:28938 ! regulates levels of ammonium created_by: pr creation_date: 2012-03-22T02:51:22Z @@ -111254,8 +110697,8 @@ synonym: "cellular ammonium homeostasis" EXACT [] is_a: GO:0055082 ! intracellular chemical homeostasis is_a: GO:0097272 ! ammonium homeostasis intersection_of: GO:0055082 ! intracellular chemical homeostasis -intersection_of: regulates_levels_of CHEBI:28938 ! ammonium -relationship: regulates_levels_of CHEBI:28938 ! ammonium +intersection_of: RO:0002332 CHEBI:28938 ! regulates levels of ammonium +relationship: RO:0002332 CHEBI:28938 ! regulates levels of ammonium created_by: pr creation_date: 2012-03-22T02:54:38Z @@ -111267,9 +110710,9 @@ def: "Any apoptotic process in a keratinocyte. A keratinocyte is an epidermal ce synonym: "keratinocyte apoptosis" NARROW [] is_a: GO:1904019 ! epithelial cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000312 ! keratinocyte +intersection_of: BFO:0000066 CL:0000312 ! occurs in keratinocyte +relationship: BFO:0000066 CL:0000312 ! occurs in keratinocyte relationship: never_in_taxon NCBITaxon:6656 ! Arthropoda -relationship: occurs_in CL:0000312 ! keratinocyte created_by: pr creation_date: 2012-03-29T10:20:51Z @@ -111281,8 +110724,8 @@ def: "Any apoptotic process in a hepatocyte, the main structural component of th synonym: "hepatocyte apoptosis" NARROW [] is_a: GO:1904019 ! epithelial cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000182 ! hepatocyte -relationship: occurs_in CL:0000182 ! hepatocyte +intersection_of: BFO:0000066 CL:0000182 ! occurs in hepatocyte +relationship: BFO:0000066 CL:0000182 ! occurs in hepatocyte created_by: pr creation_date: 2012-03-29T10:23:21Z @@ -111295,8 +110738,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "process resulting in tolerance to alcohol" NARROW [] is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:30879 ! alcohol -relationship: has_primary_input CHEBI:30879 ! alcohol +intersection_of: RO:0004009 CHEBI:30879 ! has primary input alcohol +relationship: RO:0004009 CHEBI:30879 ! has primary input alcohol created_by: pr creation_date: 2012-05-15T03:48:45Z @@ -111308,8 +110751,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:0097305 ! response to alcohol is_a: GO:1901701 ! cellular response to oxygen-containing compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:30879 ! alcohol -relationship: has_primary_input CHEBI:30879 ! alcohol +intersection_of: RO:0004009 CHEBI:30879 ! has primary input alcohol +relationship: RO:0004009 CHEBI:30879 ! has primary input alcohol created_by: pr creation_date: 2012-05-15T03:49:51Z @@ -111320,8 +110763,8 @@ namespace: biological_process def: "The orderly movement of melanocytes from one site to another, often during the development of a multicellular organism. A melanocyte is a pigment cell derived from the neural crest. It contains melanin-filled pigment granules, which give a brown to black appearance." [CL:0000148, GOC:uh, PMID:22637532] is_a: GO:0010631 ! epithelial cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000148 ! melanocyte -relationship: results_in_movement_of CL:0000148 ! melanocyte +intersection_of: RO:0002565 CL:0000148 ! results in movement of melanocyte +relationship: RO:0002565 CL:0000148 ! results in movement of melanocyte created_by: pr creation_date: 2012-06-08T10:08:18Z @@ -111333,8 +110776,8 @@ def: "Any process in which a protein is transported to, or maintained at, a part synonym: "protein localisation to heterochromatin" EXACT [GOC:mah] is_a: GO:0071168 ! protein localization to chromatin intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0000792 ! heterochromatin -relationship: has_target_end_location GO:0000792 ! heterochromatin +intersection_of: RO:0002339 GO:0000792 ! has target end location heterochromatin +relationship: RO:0002339 GO:0000792 ! has target end location heterochromatin created_by: pr creation_date: 2012-07-03T03:19:07Z @@ -111345,8 +110788,8 @@ namespace: biological_process def: "The multiplication or reproduction of chorionic trophoblast cells, resulting in the expansion of their population." [CL:0011101, GOC:BHF, PMID:15150278] is_a: GO:0008283 ! cell population proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0011101 ! chorionic trophoblast cell -relationship: acts_on_population_of CL:0011101 ! chorionic trophoblast cell +intersection_of: RO:0012003 CL:0011101 ! acts on population of chorionic trophoblast cell +relationship: RO:0012003 CL:0011101 ! acts on population of chorionic trophoblast cell created_by: pr creation_date: 2012-07-19T10:17:37Z @@ -111359,8 +110802,8 @@ subset: goslim_agr subset: goslim_mouse is_a: GO:0005488 ! binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:63299 ! carbohydrate derivative -relationship: has_primary_input CHEBI:63299 ! carbohydrate derivative +intersection_of: RO:0004009 CHEBI:63299 ! has primary input carbohydrate derivative +relationship: RO:0004009 CHEBI:63299 ! has primary input carbohydrate derivative created_by: pr creation_date: 2012-08-02T13:03:39Z @@ -111386,8 +110829,8 @@ namespace: biological_process def: "The orderly movement of a neuroblast from one site to another, often during the development of a multicellular organism or multicellular structure. A neuroblast is any cell that will divide and give rise to a neuron." [CL:0000031, GOC:jc, PMID:15543145] is_a: GO:0016477 ! cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000031 ! neuroblast (sensu Vertebrata) -relationship: results_in_movement_of CL:0000031 ! neuroblast (sensu Vertebrata) +intersection_of: RO:0002565 CL:0000031 ! results in movement of neuroblast (sensu Vertebrata) +relationship: RO:0002565 CL:0000031 ! results in movement of neuroblast (sensu Vertebrata) created_by: pr creation_date: 2012-10-29T08:24:37Z @@ -111398,9 +110841,9 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a hippocampal interneuron." [CL:1001569, GOC:jc, PMID:19655320] is_a: GO:0021895 ! cerebral cortex neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1001569 ! hippocampal interneuron +intersection_of: RO:0002315 CL:1001569 ! results in acquisition of features of hippocampal interneuron relationship: part_of GO:0021766 ! hippocampus development -relationship: results_in_acquisition_of_features_of CL:1001569 ! hippocampal interneuron +relationship: RO:0002315 CL:1001569 ! results in acquisition of features of hippocampal interneuron created_by: pr creation_date: 2012-11-04T10:58:28Z @@ -111411,7 +110854,7 @@ namespace: cellular_component def: "An arrangement of closely apposed microtubules running parallel to each other." [NIF_Subcellular:sao1872343973] synonym: "microtubule fascicle" EXACT [] xref: NIF_Subcellular:sao1872343973 -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: has_part GO:0005874 ! microtubule relationship: part_of GO:0005856 ! cytoskeleton created_by: pr @@ -111425,8 +110868,8 @@ def: "The process in which a relatively unspecialized cell acquires specialized is_a: GO:0021859 ! pyramidal neuron differentiation is_a: GO:0021895 ! cerebral cortex neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:1001571 ! hippocampal pyramidal neuron -relationship: results_in_acquisition_of_features_of CL:1001571 ! hippocampal pyramidal neuron +intersection_of: RO:0002315 CL:1001571 ! results in acquisition of features of hippocampal pyramidal neuron +relationship: RO:0002315 CL:1001571 ! results in acquisition of features of hippocampal pyramidal neuron created_by: pr creation_date: 2012-11-22T09:33:31Z @@ -111443,8 +110886,8 @@ synonym: "fibril organisation" RELATED [] synonym: "fibril organization" RELATED [] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0099512 ! supramolecular fiber -relationship: results_in_organization_of GO:0099512 ! supramolecular fiber +intersection_of: RO:0002592 GO:0099512 ! results in organization of supramolecular fiber +relationship: RO:0002592 GO:0099512 ! results in organization of supramolecular fiber created_by: pr creation_date: 2012-11-27T15:46:25Z @@ -111524,8 +110967,8 @@ synonym: "rod photoreceptor apoptotic process" EXACT [] is_a: GO:0051402 ! neuron apoptotic process is_a: GO:1990009 ! retinal cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000604 ! retinal rod cell -relationship: occurs_in CL:0000604 ! retinal rod cell +intersection_of: BFO:0000066 CL:0000604 ! occurs in retinal rod cell +relationship: BFO:0000066 CL:0000604 ! occurs in retinal rod cell created_by: pr creation_date: 2013-03-21T09:44:45Z @@ -111538,8 +110981,8 @@ synonym: "cone photoreceptor apoptotic process" EXACT [] is_a: GO:0051402 ! neuron apoptotic process is_a: GO:1990009 ! retinal cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000573 ! retinal cone cell -relationship: occurs_in CL:0000573 ! retinal cone cell +intersection_of: BFO:0000066 CL:0000573 ! occurs in retinal cone cell +relationship: BFO:0000066 CL:0000573 ! occurs in retinal cone cell created_by: pr creation_date: 2013-03-21T09:46:22Z @@ -111550,8 +110993,8 @@ namespace: biological_process def: "The orderly movement of a motor neuron from one site to another. A motor neuron is an efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes movement." [CL:0000100, GOC:yaf, PMID:20711475] is_a: GO:0001764 ! neuron migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000100 ! motor neuron -relationship: results_in_movement_of CL:0000100 ! motor neuron +intersection_of: RO:0002565 CL:0000100 ! results in movement of motor neuron +relationship: RO:0002565 CL:0000100 ! results in movement of motor neuron created_by: pr creation_date: 2013-04-23T13:00:46Z @@ -111562,8 +111005,8 @@ namespace: biological_process def: "The orderly movement of a spinal cord motor neuron from one site to another. A spinal cord motor neuron is a motor neuron that passes from the spinal cord toward or to a muscle and conducts an impulse that causes movement." [CL:0011001, GOC:yaf, PMID:20711475] is_a: GO:0097475 ! motor neuron migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0011001 ! spinal cord motor neuron -relationship: results_in_movement_of CL:0011001 ! spinal cord motor neuron +intersection_of: RO:0002565 CL:0011001 ! results in movement of spinal cord motor neuron +relationship: RO:0002565 CL:0011001 ! results in movement of spinal cord motor neuron created_by: pr creation_date: 2013-04-23T13:03:46Z @@ -111575,8 +111018,8 @@ def: "A process in which a protein is transported to, or maintained in, a locati synonym: "protein localization to nonmotile primary cilium" RELATED [] is_a: GO:0061512 ! protein localization to cilium intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0097730 ! non-motile cilium -relationship: has_target_end_location GO:0097730 ! non-motile cilium +intersection_of: RO:0002339 GO:0097730 ! has target end location non-motile cilium +relationship: RO:0002339 GO:0097730 ! has target end location non-motile cilium created_by: pr creation_date: 2013-08-13T12:16:26Z @@ -111623,8 +111066,8 @@ namespace: biological_process def: "The movement of a myeloid leukocyte within or between different tissues and organs of the body." [GOC:cvs, PMID:22342843, PMID:24157461] is_a: GO:0050900 ! leukocyte migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000766 ! myeloid leukocyte -relationship: results_in_movement_of CL:0000766 ! myeloid leukocyte +intersection_of: RO:0002565 CL:0000766 ! results in movement of myeloid leukocyte +relationship: RO:0002565 CL:0000766 ! results in movement of myeloid leukocyte created_by: pr creation_date: 2013-11-11T13:59:43Z @@ -111635,8 +111078,8 @@ namespace: biological_process def: "The movement of a granulocyte within or between different tissues and organs of the body." [GOC:cvs, PMID:24163421, PMID:24193336] is_a: GO:0097529 ! myeloid leukocyte migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000094 ! granulocyte -relationship: results_in_movement_of CL:0000094 ! granulocyte +intersection_of: RO:0002565 CL:0000094 ! results in movement of granulocyte +relationship: RO:0002565 CL:0000094 ! results in movement of granulocyte created_by: pr creation_date: 2013-11-11T14:00:44Z @@ -111648,8 +111091,8 @@ def: "The orderly movement of a lymphoid lineage cell from one site to another. synonym: "lymphoid lineage restricted progenitor cell migration" EXACT [] is_a: GO:0016477 ! cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000838 ! lymphoid lineage restricted progenitor cell -relationship: results_in_movement_of CL:0000838 ! lymphoid lineage restricted progenitor cell +intersection_of: RO:0002565 CL:0000838 ! results in movement of lymphoid lineage restricted progenitor cell +relationship: RO:0002565 CL:0000838 ! results in movement of lymphoid lineage restricted progenitor cell created_by: pr creation_date: 2013-11-28T10:47:15Z @@ -111661,9 +111104,9 @@ def: "The process in which the thymus epithelium is generated and organized." [G synonym: "thymic epithelium morphogenesis" EXACT [] is_a: GO:0002009 ! morphogenesis of an epithelium intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003846 ! thymus epithelium +intersection_of: RO:0002298 UBERON:0003846 ! results in morphogenesis of thymus epithelium relationship: part_of GO:0048538 ! thymus development -relationship: results_in_morphogenesis_of UBERON:0003846 ! thymus epithelium +relationship: RO:0002298 UBERON:0003846 ! results in morphogenesis of thymus epithelium created_by: pr creation_date: 2013-11-28T10:51:03Z @@ -111677,12 +111120,12 @@ synonym: "calcium transmembrane import into cytosol" BROAD [] synonym: "cytosolic calcium ion transport" BROAD [] is_a: GO:0070588 ! calcium ion transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29108 ! calcium(2+) -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:29108 ! calcium(2+) -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23015" xsd:anyURI created_by: pr creation_date: 2014-01-23T11:05:13Z @@ -111695,11 +111138,37 @@ def: "Merging of two or more vacuoles, or of vacuoles and vesicles within a cell is_a: GO:0007033 ! vacuole organization is_a: GO:0048284 ! organelle fusion intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_fusion_of GO:0005773 ! vacuole -relationship: results_in_fusion_of GO:0005773 ! vacuole +intersection_of: RO:0012008 GO:0005773 ! results in fusion of vacuole +relationship: RO:0012008 GO:0005773 ! results in fusion of vacuole created_by: pr creation_date: 2014-02-28T09:49:31Z +[Term] +id: GO:0097623 +name: potassium ion export across plasma membrane +namespace: biological_process +alt_id: GO:0071435 +alt_id: GO:0098668 +def: "The directed movement of potassium ions from inside of a cell, across the plasma membrane and into the extracellular region." [GOC:vw, PMID:11932440] +synonym: "potassium export" BROAD [GOC:mah] +synonym: "potassium export across plasma membrane" EXACT [] +synonym: "potassium ion export" BROAD [] +synonym: "potassium ion export from cell" EXACT [] +is_a: GO:0071805 ! potassium ion transmembrane transport +is_a: GO:0140115 ! export across plasma membrane +intersection_of: GO:0006810 ! transport +intersection_of: RO:0002338 GO:0005829 ! has target start location cytosol +intersection_of: RO:0002339 GO:0005576 ! has target end location extracellular region +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:29103 ! has primary input potassium(1+) +relationship: RO:0002338 GO:0005829 ! has target start location cytosol +relationship: RO:0002339 GO:0005576 ! has target end location extracellular region +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:29103 ! has primary input potassium(1+) +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/14265" xsd:anyURI +created_by: pr +creation_date: 2009-12-16T11:10:45Z + [Term] id: GO:0097642 name: calcitonin family receptor activity @@ -111773,8 +111242,8 @@ def: "The regrowth of neural tissue following its loss or destruction." [Wikiped synonym: "neuroregeneration" RELATED [] is_a: GO:0042246 ! tissue regeneration intersection_of: GO:0031099 ! regeneration -intersection_of: results_in_maturation_of UBERON:0003714 ! neural tissue -relationship: results_in_maturation_of UBERON:0003714 ! neural tissue +intersection_of: RO:0002299 UBERON:0003714 ! results in maturation of neural tissue +relationship: RO:0002299 UBERON:0003714 ! results in maturation of neural tissue created_by: pr creation_date: 2016-08-25T13:14:27Z @@ -111788,8 +111257,8 @@ synonym: "sperm movement" EXACT [] is_a: GO:0022414 ! reproductive process is_a: GO:0048870 ! cell motility intersection_of: GO:0048870 ! cell motility -intersection_of: results_in_movement_of CL:0000019 ! sperm -relationship: results_in_movement_of CL:0000019 ! sperm +intersection_of: RO:0002565 CL:0000019 ! results in movement of sperm +relationship: RO:0002565 CL:0000019 ! results in movement of sperm created_by: pr creation_date: 2016-09-01T12:00:45Z @@ -111949,8 +111418,8 @@ def: "The process in which a relatively unspecialized cell acquires specialized is_a: GO:0014902 ! myotube differentiation is_a: GO:0035914 ! skeletal muscle cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0008002 ! skeletal muscle fiber -relationship: results_in_acquisition_of_features_of CL:0008002 ! skeletal muscle fiber +intersection_of: RO:0002315 CL:0008002 ! results in acquisition of features of skeletal muscle fiber +relationship: RO:0002315 CL:0008002 ! results in acquisition of features of skeletal muscle fiber created_by: dos creation_date: 2013-10-15T14:00:34Z @@ -111961,21 +111430,9 @@ namespace: biological_process def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a neuromuscular junction that targets a skeletal muscle fiber." [GOC:mtg_OBO2OWL_2013] is_a: GO:0007528 ! neuromuscular junction development intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0098522 ! neuromuscular junction of skeletal muscle fiber +intersection_of: RO:0002592 GO:0098522 ! results in organization of neuromuscular junction of skeletal muscle fiber relationship: part_of GO:0048741 ! skeletal muscle fiber development -relationship: results_in_organization_of GO:0098522 ! neuromuscular junction of skeletal muscle fiber - -[Term] -id: GO:0098531 -name: ligand-activated transcription factor activity -namespace: molecular_function -def: "A DNA-binding transcription factor activity regulated by binding to a ligand and that modulates the transcription of specific genes and gene sets. Examples include the lac and trp repressors in E.coli and steroid hormone receptors." [GOC:dos, PMID:25568920, PMID:8735275] -comment: For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity. -synonym: "direct ligand regulated sequence-specific DNA binding transcription factor activity" EXACT [] -synonym: "transcription factor activity, direct ligand regulated sequence-specific DNA binding" EXACT [] -is_a: GO:0003700 ! DNA-binding transcription factor activity -created_by: dos -creation_date: 2013-10-17T15:51:30Z +relationship: RO:0002592 GO:0098522 ! results in organization of neuromuscular junction of skeletal muscle fiber [Term] id: GO:0098542 @@ -111992,8 +111449,8 @@ synonym: "resistance response to pathogen" NARROW [] is_a: GO:0006952 ! defense response is_a: GO:0051707 ! response to other organism intersection_of: GO:0006952 ! defense response -intersection_of: has_primary_input NCBITaxon_Union:0000030 -relationship: has_primary_input NCBITaxon_Union:0000030 +intersection_of: RO:0004009 NCBITaxon_Union:0000030 ! has primary input +relationship: RO:0004009 NCBITaxon_Union:0000030 ! has primary input property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22173" xsd:anyURI created_by: dos creation_date: 2013-11-11T12:59:11Z @@ -112006,8 +111463,8 @@ def: "Any process in which a protein complex is maintained in a location and pre is_a: GO:0031503 ! protein-containing complex localization is_a: GO:0051235 ! maintenance of location intersection_of: GO:0051235 ! maintenance of location -intersection_of: has_primary_input GO:0032991 ! protein-containing complex -relationship: has_primary_input GO:0032991 ! protein-containing complex +intersection_of: RO:0004009 GO:0032991 ! has primary input protein-containing complex +relationship: RO:0004009 GO:0032991 ! has primary input protein-containing complex created_by: dos creation_date: 2013-11-15T18:20:16Z @@ -112019,10 +111476,10 @@ def: "Any process in which a protein complex is maintained in a specific locatio is_a: GO:0051651 ! maintenance of location in cell is_a: GO:0098544 ! maintenance of protein complex location intersection_of: GO:0098544 ! maintenance of protein complex location -intersection_of: has_primary_input GO:0032991 ! protein-containing complex -intersection_of: occurs_in GO:0005737 ! cytoplasm -relationship: has_primary_input GO:0032991 ! protein-containing complex -relationship: occurs_in GO:0005737 ! cytoplasm +intersection_of: BFO:0000066 GO:0005737 ! occurs in cytoplasm +intersection_of: RO:0004009 GO:0032991 ! has primary input protein-containing complex +relationship: BFO:0000066 GO:0005737 ! occurs in cytoplasm +relationship: RO:0004009 GO:0032991 ! has primary input protein-containing complex created_by: dos creation_date: 2013-11-15T20:49:15Z @@ -112129,8 +111586,8 @@ namespace: molecular_function def: "Binding to a collagen fibril." [GOC:dos, PMID:21421911] is_a: GO:0050840 ! extracellular matrix binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input GO:0098643 ! banded collagen fibril -relationship: has_primary_input GO:0098643 ! banded collagen fibril +intersection_of: RO:0004009 GO:0098643 ! has primary input banded collagen fibril +relationship: RO:0004009 GO:0098643 ! has primary input banded collagen fibril property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/21211" xsd:anyURI [Term] @@ -112185,8 +111642,8 @@ namespace: cellular_component def: "A supramolecular assembly of fibrillar collagen complexes in the form of a long fiber (fibril) with transverse striations (bands)." [GOC:dos, PMID:21421911] is_a: GO:0098644 ! complex of collagen trimers is_a: GO:0099512 ! supramolecular fiber -relationship: has_characteristic PATO:0002309 ! fiber shaped -relationship: has_characteristic PATO:0015006 ! polymeric +relationship: RO:0000053 PATO:0002309 ! has characteristic fiber shaped +relationship: RO:0000053 PATO:0015006 ! has characteristic polymeric [Term] id: GO:0098644 @@ -112206,7 +111663,7 @@ namespace: cellular_component def: "A supramolecular complex that consists of collagen triple helices associated to form a network." [GOC:dos, PMID:21421911] is_a: GO:0098644 ! complex of collagen trimers is_a: GO:0099081 ! supramolecular polymer -relationship: has_characteristic PATO:0015006 ! polymeric +relationship: RO:0000053 PATO:0015006 ! has characteristic polymeric [Term] id: GO:0098651 @@ -112230,10 +111687,10 @@ synonym: "cation transmembrane transport" BROAD [] is_a: GO:0006812 ! monoatomic cation transport is_a: GO:0034220 ! monoatomic ion transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:23906 ! monoatomic cation -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:23906 ! monoatomic cation -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:23906 ! has primary input monoatomic cation +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:23906 ! has primary input monoatomic cation [Term] id: GO:0098657 @@ -112243,12 +111700,12 @@ def: "The directed movement of some substance from outside of a cell into a cell synonym: "uptake" BROAD [] is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:24431 ! chemical entity -intersection_of: has_target_end_location GO:0005737 ! cytoplasm -intersection_of: has_target_start_location GO:0005576 ! extracellular region -relationship: has_primary_input CHEBI:24431 ! chemical entity -relationship: has_target_end_location GO:0005737 ! cytoplasm -relationship: has_target_start_location GO:0005576 ! extracellular region +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005737 ! has target end location cytoplasm +intersection_of: RO:0004009 CHEBI:24431 ! has primary input chemical entity +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005737 ! has target end location cytoplasm +relationship: RO:0004009 CHEBI:24431 ! has primary input chemical entity [Term] id: GO:0098658 @@ -112259,14 +111716,14 @@ synonym: "inorganic anion import into cell" EXACT [] is_a: GO:0098661 ! inorganic anion transmembrane transport is_a: GO:0099587 ! inorganic ion import across plasma membrane intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:24834 ! inorganic anion -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005576 ! extracellular region -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:24834 ! inorganic anion -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005576 ! extracellular region -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:24834 ! has primary input inorganic anion +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:24834 ! has primary input inorganic anion [Term] id: GO:0098659 @@ -112277,14 +111734,14 @@ synonym: "inorganic cation import into cell" EXACT [] is_a: GO:0098662 ! inorganic cation transmembrane transport is_a: GO:0099587 ! inorganic ion import across plasma membrane intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:36915 ! inorganic cation -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005576 ! extracellular region -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:36915 ! inorganic cation -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005576 ! extracellular region -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:36915 ! has primary input inorganic cation +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:36915 ! has primary input inorganic cation [Term] id: GO:0098660 @@ -112296,10 +111753,10 @@ synonym: "inorganic ion membrane transport" EXACT [] synonym: "transmembrane inorganic ion transport" EXACT [GOC:dph, GOC:tb] is_a: GO:0055085 ! transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:36914 ! inorganic ion -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:36914 ! inorganic ion -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:36914 ! has primary input inorganic ion +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:36914 ! has primary input inorganic ion [Term] id: GO:0098661 @@ -112312,10 +111769,10 @@ synonym: "transmembrane inorganic anion transport" EXACT [GOC:dph, GOC:tb] is_a: GO:0015698 ! inorganic anion transport is_a: GO:0098660 ! inorganic ion transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:24834 ! inorganic anion -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:24834 ! inorganic anion -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:24834 ! has primary input inorganic anion +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:24834 ! has primary input inorganic anion [Term] id: GO:0098662 @@ -112331,10 +111788,10 @@ synonym: "monovalent inorganic cation transport" NARROW [] synonym: "transmembrane inorganic cation transport" EXACT [GOC:dph, GOC:tb] is_a: GO:0098660 ! inorganic ion transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:36915 ! inorganic cation -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:36915 ! inorganic cation -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:36915 ! has primary input inorganic cation +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:36915 ! has primary input inorganic cation [Term] id: GO:0098664 @@ -112385,8 +111842,8 @@ def: "Any process that modulates the frequency, rate or extent of the synaptic v subset: goslim_synapse is_a: GO:0060627 ! regulation of vesicle-mediated transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0099504 ! synaptic vesicle cycle -relationship: regulates GO:0099504 ! synaptic vesicle cycle +intersection_of: RO:0002211 GO:0099504 ! regulates (processual) synaptic vesicle cycle +relationship: RO:0002211 GO:0099504 ! regulates (processual) synaptic vesicle cycle created_by: dos creation_date: 2017-03-21T16:06:48Z @@ -112401,14 +111858,14 @@ is_a: GO:0015853 ! adenine transport is_a: GO:0098739 ! import across plasma membrane is_a: GO:1904823 ! purine nucleobase transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:16708 ! adenine -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005576 ! extracellular region -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:16708 ! adenine -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005576 ! extracellular region -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:16708 ! has primary input adenine +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:16708 ! has primary input adenine created_by: dph creation_date: 2012-12-06T14:51:42Z @@ -112425,14 +111882,14 @@ is_a: GO:0097553 ! calcium ion transmembrane import into cytosol is_a: GO:0098659 ! inorganic cation import across plasma membrane is_a: GO:1902656 ! calcium ion import into cytosol intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29108 ! calcium(2+) -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005576 ! extracellular region -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:29108 ! calcium(2+) -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005576 ! extracellular region -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24965" xsd:anyURI created_by: mah creation_date: 2013-02-07T13:07:59Z @@ -112447,37 +111904,38 @@ synonym: "carbohydrate import into cell" EXACT [] is_a: GO:0034219 ! carbohydrate transmembrane transport is_a: GO:0098739 ! import across plasma membrane intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:16646 ! carbohydrate -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005576 ! extracellular region -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:16646 ! carbohydrate -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005576 ! extracellular region -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:16646 ! has primary input carbohydrate +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:16646 ! has primary input carbohydrate created_by: pr creation_date: 2012-05-31T02:45:02Z [Term] id: GO:0098708 -name: glucose import across plasma membrane +name: D-glucose import across plasma membrane namespace: biological_process alt_id: GO:0061490 alt_id: GO:1990821 -def: "The directed movement of glucose from outside of a cell, across the plasma membrane and into the cytosol." [GOC:dos] +def: "The directed movement of D-glucose from outside of a cell, across the plasma membrane and into the cytosol." [GOC:dos] +synonym: "glucose import across plasma membrane" EXACT [] synonym: "glucose import into cell" EXACT [] synonym: "high affinity glucose import" NARROW [] is_a: GO:0140271 ! hexose import across plasma membrane -is_a: GO:1904659 ! glucose transmembrane transport +is_a: GO:1904659 ! D-glucose transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:4167 ! D-glucopyranose -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005576 ! extracellular region -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:4167 ! D-glucopyranose -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005576 ! extracellular region -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:4167 ! has primary input D-glucopyranose +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:4167 ! has primary input D-glucopyranose created_by: al creation_date: 2012-12-06T14:54:07Z @@ -112498,14 +111956,14 @@ is_a: GO:0033212 ! iron import into cell is_a: GO:0034755 ! iron ion transmembrane transport is_a: GO:0098659 ! inorganic cation import across plasma membrane intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:24875 ! iron cation -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005576 ! extracellular region -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:24875 ! iron cation -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005576 ! extracellular region -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:24875 ! has primary input iron cation +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:24875 ! has primary input iron cation created_by: pr creation_date: 2012-12-20T08:29:00Z @@ -112522,14 +111980,14 @@ synonym: "L-glutamate(1-) import into cell" EXACT [] is_a: GO:0015813 ! L-glutamate transmembrane transport is_a: GO:0089718 ! amino acid import across plasma membrane intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29985 ! L-glutamate(1-) -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005576 ! extracellular region -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:29985 ! L-glutamate(1-) -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005576 ! extracellular region -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:29985 ! has primary input L-glutamate(1-) +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:29985 ! has primary input L-glutamate(1-) created_by: mah creation_date: 2013-06-12T12:32:47Z @@ -112546,14 +112004,14 @@ synonym: "sodium ion import into cell" EXACT [] is_a: GO:0035725 ! sodium ion transmembrane transport is_a: GO:0098659 ! inorganic cation import across plasma membrane intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29101 ! sodium(1+) -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005576 ! extracellular region -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:29101 ! sodium(1+) -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005576 ! extracellular region -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:29101 ! has primary input sodium(1+) +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:29101 ! has primary input sodium(1+) created_by: pr creation_date: 2012-08-03T16:55:52Z @@ -112565,8 +112023,8 @@ def: "Division of a stem cell during which it retains its identity and buds off is_a: GO:0008356 ! asymmetric cell division is_a: GO:0017145 ! stem cell division intersection_of: GO:0008356 ! asymmetric cell division -intersection_of: has_primary_input CL:0000034 ! stem cell -relationship: has_primary_input CL:0000034 ! stem cell +intersection_of: RO:0004009 CL:0000034 ! has primary input stem cell +relationship: RO:0004009 CL:0000034 ! has primary input stem cell [Term] id: GO:0098723 @@ -112593,8 +112051,8 @@ def: "The self-renewing division of a germline stem cell, to produce a daughter is_a: GO:0042078 ! germ-line stem cell division is_a: GO:0098722 ! asymmetric stem cell division intersection_of: GO:0008356 ! asymmetric cell division -intersection_of: has_primary_input CL:0000014 ! germ line stem cell -relationship: has_primary_input CL:0000014 ! germ line stem cell +intersection_of: RO:0004009 CL:0000014 ! has primary input germ line stem cell +relationship: RO:0004009 CL:0000014 ! has primary input germ line stem cell [Term] id: GO:0098739 @@ -112605,12 +112063,12 @@ synonym: "uptake" BROAD [] is_a: GO:0055085 ! transmembrane transport is_a: GO:0098657 ! import into cell intersection_of: GO:0006810 ! transport -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005576 ! extracellular region -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005576 ! extracellular region -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane [Term] id: GO:0098749 @@ -112619,9 +112077,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a cerebellar neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell." [GOC:dos] is_a: GO:0021954 ! central nervous system neuron development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:1001611 ! cerebellar neuron +intersection_of: RO:0002296 CL:1001611 ! results in development of cerebellar neuron relationship: part_of GO:0021549 ! cerebellum development -relationship: results_in_development_of CL:1001611 ! cerebellar neuron +relationship: RO:0002296 CL:1001611 ! results in development of cerebellar neuron [Term] id: GO:0098751 @@ -112632,9 +112090,9 @@ comment: Not to be used for manual annotation. Please choose a more specific cel subset: gocheck_do_not_annotate is_a: GO:0048468 ! cell development intersection_of: GO:0032502 ! developmental process -intersection_of: results_in_development_of CL:0001035 ! bone cell +intersection_of: RO:0002296 CL:0001035 ! results in development of bone cell relationship: part_of GO:0060348 ! bone development -relationship: results_in_development_of CL:0001035 ! bone cell +relationship: RO:0002296 CL:0001035 ! results in development of bone cell [Term] id: GO:0098754 @@ -112657,8 +112115,8 @@ def: "Any process involved in the maintenance of an internal steady state of ino subset: goslim_pombe is_a: GO:0048878 ! chemical homeostasis intersection_of: GO:0042592 ! homeostatic process -intersection_of: regulates_levels_of CHEBI:36914 ! inorganic ion -relationship: regulates_levels_of CHEBI:36914 ! inorganic ion +intersection_of: RO:0002332 CHEBI:36914 ! regulates levels of inorganic ion +relationship: RO:0002332 CHEBI:36914 ! regulates levels of inorganic ion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24455" xsd:anyURI [Term] @@ -112669,9 +112127,9 @@ def: "The process whose specific outcome is the progression of the skin epidermi is_a: GO:0008544 ! epidermis development is_a: GO:0060429 ! epithelium development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001003 ! skin epidermis +intersection_of: RO:0002296 UBERON:0001003 ! results in development of skin epidermis relationship: part_of GO:0043588 ! skin development -relationship: results_in_development_of UBERON:0001003 ! skin epidermis +relationship: RO:0002296 UBERON:0001003 ! results in development of skin epidermis [Term] id: GO:0098793 @@ -112680,7 +112138,7 @@ namespace: cellular_component def: "The part of a synapse that is part of the presynaptic cell." [GOC:dos] subset: goslim_synapse synonym: "presynaptic terminal" EXACT [] -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of CL:0000540 ! neuron relationship: part_of GO:0045202 ! synapse @@ -112690,7 +112148,7 @@ name: postsynapse namespace: cellular_component def: "The part of a synapse that is part of the post-synaptic cell." [GOC:dos] subset: goslim_synapse -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure relationship: part_of CL:0000000 ! cell relationship: part_of GO:0045202 ! synapse @@ -112722,8 +112180,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a system process, a multicellular organismal process carried out by the renal system." [GOC:dos] is_a: GO:0044057 ! regulation of system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003014 ! renal system process -relationship: regulates GO:0003014 ! renal system process +intersection_of: RO:0002211 GO:0003014 ! regulates (processual) renal system process +relationship: RO:0002211 GO:0003014 ! regulates (processual) renal system process [Term] id: GO:0098802 @@ -112769,11 +112227,11 @@ is_a: GO:0009966 ! regulation of signal transduction is_a: GO:0031644 ! regulation of nervous system process is_a: GO:0050804 ! modulation of chemical synaptic transmission intersection_of: GO:0050789 ! regulation of biological process -intersection_of: regulates GO:0060079 ! excitatory postsynaptic potential -relationship: regulates GO:0007165 ! signal transduction -relationship: regulates GO:0007268 ! chemical synaptic transmission -relationship: regulates GO:0050877 ! nervous system process -relationship: regulates GO:0060079 ! excitatory postsynaptic potential +intersection_of: RO:0002211 GO:0060079 ! regulates (processual) excitatory postsynaptic potential +relationship: RO:0002211 GO:0007165 ! regulates (processual) signal transduction +relationship: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +relationship: RO:0002211 GO:0050877 ! regulates (processual) nervous system process +relationship: RO:0002211 GO:0060079 ! regulates (processual) excitatory postsynaptic potential [Term] id: GO:0098831 @@ -112797,10 +112255,10 @@ is_a: GO:0006886 ! intracellular protein transport is_a: GO:0010970 ! transport along microtubule is_a: GO:0099118 ! microtubule-based protein transport intersection_of: GO:0046907 ! intracellular transport -intersection_of: has_primary_input PR:000000001 ! protein -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: has_primary_input PR:000000001 ! protein -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: RO:0004009 PR:000000001 ! has primary input protein [Term] id: GO:0098846 @@ -112834,6 +112292,15 @@ def: "A cell projection supported by an assembly of actin filaments, and which l is_a: GO:0120025 ! plasma membrane bounded cell projection relationship: has_part GO:0005884 ! actin filament +[Term] +id: GO:0098862 +name: cluster of actin-based cell projections +namespace: cellular_component +def: "A cell part consisting of multiple, closely packed actin-based cell projections." [GOC:dos] +is_a: GO:0110165 ! cellular anatomical structure +relationship: has_part GO:0098858 ! actin-based cell projection +relationship: part_of CL:0000000 ! cell + [Term] id: GO:0098867 name: intramembranous bone growth @@ -112841,8 +112308,8 @@ namespace: biological_process def: "The increase in size or mass of an intramembranous bone that contributes to the shaping of the bone." [PMID:26399686] is_a: GO:0098868 ! bone growth intersection_of: GO:0048589 ! developmental growth -intersection_of: results_in_growth_of UBERON:0002514 ! intramembranous bone -relationship: results_in_growth_of UBERON:0002514 ! intramembranous bone +intersection_of: RO:0002343 UBERON:0002514 ! results in growth of intramembranous bone +relationship: RO:0002343 UBERON:0002514 ! results in growth of intramembranous bone [Term] id: GO:0098868 @@ -112851,9 +112318,9 @@ namespace: biological_process def: "The increase in size or mass of a bone that contributes to the shaping of that bone." [GOC:dos] is_a: GO:0035265 ! organ growth intersection_of: GO:0048589 ! developmental growth -intersection_of: results_in_growth_of UBERON:0001474 ! bone element +intersection_of: RO:0002343 UBERON:0001474 ! results in growth of bone element relationship: part_of GO:0060348 ! bone development -relationship: results_in_growth_of UBERON:0001474 ! bone element +relationship: RO:0002343 UBERON:0001474 ! results in growth of bone element [Term] id: GO:0098871 @@ -112875,11 +112342,11 @@ def: "The directed movement of substances to the plasma membrane in transport ve is_a: GO:0016192 ! vesicle-mediated transport is_a: GO:0051668 ! localization within membrane intersection_of: GO:0006810 ! transport -intersection_of: has_target_end_location GO:0005886 ! plasma membrane -intersection_of: process_has_causal_agent GO:0031982 ! vesicle +intersection_of: RO:0002339 GO:0005886 ! has target end location plasma membrane +intersection_of: RO:0002608 GO:0031982 ! process has causal agent vesicle relationship: ends_with GO:0006887 ! exocytosis -relationship: has_target_end_location GO:0005886 ! plasma membrane -relationship: process_has_causal_agent GO:0031982 ! vesicle +relationship: RO:0002339 GO:0005886 ! has target end location plasma membrane +relationship: RO:0002608 GO:0031982 ! process has causal agent vesicle [Term] id: GO:0098877 @@ -112893,11 +112360,11 @@ is_a: GO:0098876 ! vesicle-mediated transport to the plasma membrane is_a: GO:0099637 ! neurotransmitter receptor transport is_a: GO:1990778 ! protein localization to cell periphery intersection_of: GO:0015031 ! protein transport -intersection_of: has_primary_input GO:0098878 ! neurotransmitter receptor complex -intersection_of: has_target_end_location GO:0005886 ! plasma membrane -relationship: has_primary_input GO:0098878 ! neurotransmitter receptor complex -relationship: has_target_end_location GO:0005886 ! plasma membrane -relationship: process_has_causal_agent GO:0031982 ! vesicle +intersection_of: RO:0002339 GO:0005886 ! has target end location plasma membrane +intersection_of: RO:0004009 GO:0098878 ! has primary input neurotransmitter receptor complex +relationship: RO:0002339 GO:0005886 ! has target end location plasma membrane +relationship: RO:0002608 GO:0031982 ! process has causal agent vesicle +relationship: RO:0004009 GO:0098878 ! has primary input neurotransmitter receptor complex [Term] id: GO:0098878 @@ -112923,8 +112390,8 @@ synonym: "synapse removal" EXACT [GOC:aruk, GOC:bc, PMID:22632716] is_a: GO:0050808 ! synapse organization is_a: GO:0150146 ! cell junction disassembly intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0045202 ! synapse -relationship: results_in_disassembly_of GO:0045202 ! synapse +intersection_of: RO:0002590 GO:0045202 ! results in disassembly of synapse +relationship: RO:0002590 GO:0045202 ! results in disassembly of synapse [Term] id: GO:0098900 @@ -112934,8 +112401,8 @@ def: "Any process that modulates the frequency, rate or extent of action potenti comment: The ion channels through which current flows during an action potential should be annotated to the process 'action potential'. Gene products involved in modulating the characteristics of an action potential via changing the expression levels or the activity of these channels (e.g. modulating their kinetics or voltage sensitivity) should be annotated to this regulation term. is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0050789 ! regulation of biological process -intersection_of: regulates GO:0001508 ! action potential -relationship: regulates GO:0001508 ! action potential +intersection_of: RO:0002211 GO:0001508 ! regulates (processual) action potential +relationship: RO:0002211 GO:0001508 ! regulates (processual) action potential [Term] id: GO:0098901 @@ -112944,8 +112411,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in a cardiac muscle cell. This typically occurs via modulation of the activity or expression of voltage-gated ion channels." [GOC:dos, GOC:mtg_cardiac_conduct_nov11] is_a: GO:0098900 ! regulation of action potential intersection_of: GO:0050789 ! regulation of biological process -intersection_of: regulates GO:0086001 ! cardiac muscle cell action potential -relationship: regulates GO:0086001 ! cardiac muscle cell action potential +intersection_of: RO:0002211 GO:0086001 ! regulates (processual) cardiac muscle cell action potential +relationship: RO:0002211 GO:0086001 ! regulates (processual) cardiac muscle cell action potential [Term] id: GO:0098904 @@ -112957,9 +112424,9 @@ synonym: "regulation of AV node cardiac muscle cell action potential" EXACT [] is_a: GO:0010646 ! regulation of cell communication is_a: GO:0098901 ! regulation of cardiac muscle cell action potential intersection_of: GO:0050789 ! regulation of biological process -intersection_of: regulates GO:0086016 ! AV node cell action potential -relationship: regulates GO:0007154 ! cell communication -relationship: regulates GO:0086016 ! AV node cell action potential +intersection_of: RO:0002211 GO:0086016 ! regulates (processual) AV node cell action potential +relationship: RO:0002211 GO:0007154 ! regulates (processual) cell communication +relationship: RO:0002211 GO:0086016 ! regulates (processual) AV node cell action potential created_by: tb creation_date: 2011-11-10T08:58:56Z @@ -112971,8 +112438,8 @@ def: "Any process that modulates the frequency, rate or extent of action potenti synonym: "regulation of bundle of His cardiac muscle cell action potential" EXACT [] is_a: GO:0098901 ! regulation of cardiac muscle cell action potential intersection_of: GO:0050789 ! regulation of biological process -intersection_of: regulates GO:0086043 ! bundle of His cell action potential -relationship: regulates GO:0086043 ! bundle of His cell action potential +intersection_of: RO:0002211 GO:0086043 ! regulates (processual) bundle of His cell action potential +relationship: RO:0002211 GO:0086043 ! regulates (processual) bundle of His cell action potential created_by: dph creation_date: 2011-11-15T12:01:18Z @@ -112984,9 +112451,9 @@ def: "Any process that modulates the frequency, rate or extent of action potenti is_a: GO:0010646 ! regulation of cell communication is_a: GO:0098901 ! regulation of cardiac muscle cell action potential intersection_of: GO:0050789 ! regulation of biological process -intersection_of: regulates GO:0086017 ! Purkinje myocyte action potential -relationship: regulates GO:0007154 ! cell communication -relationship: regulates GO:0086017 ! Purkinje myocyte action potential +intersection_of: RO:0002211 GO:0086017 ! regulates (processual) Purkinje myocyte action potential +relationship: RO:0002211 GO:0007154 ! regulates (processual) cell communication +relationship: RO:0002211 GO:0086017 ! regulates (processual) Purkinje myocyte action potential created_by: tb creation_date: 2011-11-10T08:58:56Z @@ -113002,9 +112469,9 @@ synonym: "regulation of sinus node cardiac muscle cell action potential" NARROW is_a: GO:0010646 ! regulation of cell communication is_a: GO:0098901 ! regulation of cardiac muscle cell action potential intersection_of: GO:0050789 ! regulation of biological process -intersection_of: regulates GO:0086015 ! SA node cell action potential -relationship: regulates GO:0007154 ! cell communication -relationship: regulates GO:0086015 ! SA node cell action potential +intersection_of: RO:0002211 GO:0086015 ! regulates (processual) SA node cell action potential +relationship: RO:0002211 GO:0007154 ! regulates (processual) cell communication +relationship: RO:0002211 GO:0086015 ! regulates (processual) SA node cell action potential created_by: tb creation_date: 2011-11-10T08:50:15Z @@ -113017,9 +112484,9 @@ synonym: "generation of action potential" RELATED [GOC:dph, GOC:tb] is_a: GO:0051969 ! regulation of transmission of nerve impulse is_a: GO:0098900 ! regulation of action potential intersection_of: GO:0050789 ! regulation of biological process -intersection_of: regulates GO:0019228 ! neuronal action potential -relationship: regulates GO:0019226 ! transmission of nerve impulse -relationship: regulates GO:0019228 ! neuronal action potential +intersection_of: RO:0002211 GO:0019228 ! regulates (processual) neuronal action potential +relationship: RO:0002211 GO:0019226 ! regulates (processual) transmission of nerve impulse +relationship: RO:0002211 GO:0019228 ! regulates (processual) neuronal action potential [Term] id: GO:0098916 @@ -113028,10 +112495,10 @@ namespace: biological_process def: "Cell-cell signaling from pre to post-synapse, across the synaptic cleft." [GOC:dos] is_a: GO:0099537 ! trans-synaptic signaling intersection_of: GO:0099537 ! trans-synaptic signaling -intersection_of: has_end_location GO:0098794 ! postsynapse -intersection_of: has_start_location GO:0098793 ! presynapse -relationship: has_end_location GO:0098794 ! postsynapse -relationship: has_start_location GO:0098793 ! presynapse +intersection_of: RO:0002231 GO:0098793 ! has start location presynapse +intersection_of: RO:0002232 GO:0098794 ! has end location postsynapse +relationship: RO:0002231 GO:0098793 ! has start location presynapse +relationship: RO:0002232 GO:0098794 ! has end location postsynapse [Term] id: GO:0098917 @@ -113040,10 +112507,10 @@ namespace: biological_process def: "Cell-cell signaling from post to pre-synapse, across the synaptic cleft." [GOC:dos] is_a: GO:0099537 ! trans-synaptic signaling intersection_of: GO:0099537 ! trans-synaptic signaling -intersection_of: has_end_location GO:0098793 ! presynapse -intersection_of: has_start_location GO:0098794 ! postsynapse -relationship: has_end_location GO:0098793 ! presynapse -relationship: has_start_location GO:0098794 ! postsynapse +intersection_of: RO:0002231 GO:0098794 ! has start location postsynapse +intersection_of: RO:0002232 GO:0098793 ! has end location presynapse +relationship: RO:0002231 GO:0098794 ! has start location postsynapse +relationship: RO:0002232 GO:0098793 ! has end location presynapse [Term] id: GO:0098920 @@ -113054,12 +112521,12 @@ subset: goslim_synapse is_a: GO:0098917 ! retrograde trans-synaptic signaling is_a: GO:0099541 ! trans-synaptic signaling by lipid intersection_of: GO:0099537 ! trans-synaptic signaling -intersection_of: has_end_location GO:0098793 ! presynapse -intersection_of: has_start_location GO:0098794 ! postsynapse -intersection_of: process_has_causal_agent CHEBI:18059 ! lipid -relationship: has_end_location GO:0098793 ! presynapse -relationship: has_start_location GO:0098794 ! postsynapse -relationship: process_has_causal_agent CHEBI:18059 ! lipid +intersection_of: RO:0002231 GO:0098794 ! has start location postsynapse +intersection_of: RO:0002232 GO:0098793 ! has end location presynapse +intersection_of: RO:0002608 CHEBI:18059 ! process has causal agent lipid +relationship: RO:0002231 GO:0098794 ! has start location postsynapse +relationship: RO:0002232 GO:0098793 ! has end location presynapse +relationship: RO:0002608 CHEBI:18059 ! process has causal agent lipid [Term] id: GO:0098926 @@ -113070,9 +112537,9 @@ subset: goslim_synapse synonym: "postsynaptic signaling pathway" EXACT syngo_official_label [] is_a: GO:0007165 ! signal transduction intersection_of: GO:0007165 ! signal transduction -intersection_of: has_start_location GO:0098794 ! postsynapse -relationship: has_start_location GO:0098794 ! postsynapse +intersection_of: RO:0002231 GO:0098794 ! has start location postsynapse relationship: part_of GO:0099536 ! synaptic signaling +relationship: RO:0002231 GO:0098794 ! has start location postsynapse [Term] id: GO:0098928 @@ -113083,8 +112550,8 @@ subset: goslim_synapse synonym: "presynaptic signaling pathway" EXACT syngo_official_label [] is_a: GO:0007165 ! signal transduction intersection_of: GO:0007165 ! signal transduction -intersection_of: has_start_location GO:0098793 ! presynapse -relationship: has_start_location GO:0098793 ! presynapse +intersection_of: RO:0002231 GO:0098793 ! has start location presynapse +relationship: RO:0002231 GO:0098793 ! has start location presynapse [Term] id: GO:0098930 @@ -113097,10 +112564,10 @@ synonym: "axoplasmic transport" EXACT [] xref: Wikipedia:Axoplasmic_transport is_a: GO:0008088 ! axo-dendritic transport intersection_of: GO:0046907 ! intracellular transport -intersection_of: occurs_in GO:0030424 ! axon -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: occurs_in GO:0030424 ! axon -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: BFO:0000066 GO:0030424 ! occurs in axon +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: BFO:0000066 GO:0030424 ! occurs in axon +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule [Term] id: GO:0098934 @@ -113110,12 +112577,12 @@ def: "The directed movement of organelles or molecules along microtubules in a d subset: goslim_synapse is_a: GO:0098935 ! dendritic transport intersection_of: GO:0006810 ! transport -intersection_of: has_target_start_location GO:0098793 ! presynapse -intersection_of: occurs_in GO:0032839 ! dendrite cytoplasm -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: has_target_start_location GO:0098793 ! presynapse -relationship: occurs_in GO:0032839 ! dendrite cytoplasm -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: BFO:0000066 GO:0032839 ! occurs in dendrite cytoplasm +intersection_of: RO:0002338 GO:0098793 ! has target start location presynapse +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: BFO:0000066 GO:0032839 ! occurs in dendrite cytoplasm +relationship: RO:0002338 GO:0098793 ! has target start location presynapse +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule [Term] id: GO:0098935 @@ -113126,10 +112593,10 @@ subset: goslim_synapse synonym: "dendrite cargo transport" EXACT [] is_a: GO:0008088 ! axo-dendritic transport intersection_of: GO:0046907 ! intracellular transport -intersection_of: occurs_in GO:0030425 ! dendrite -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: occurs_in GO:0030425 ! dendrite -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: BFO:0000066 GO:0030425 ! occurs in dendrite +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: BFO:0000066 GO:0030425 ! occurs in dendrite +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule [Term] id: GO:0098937 @@ -113139,12 +112606,12 @@ def: "The directed movement of organelles or molecules along microtubules from t subset: goslim_synapse is_a: GO:0098935 ! dendritic transport intersection_of: GO:0006810 ! transport -intersection_of: has_target_end_location GO:0098794 ! postsynapse -intersection_of: occurs_in GO:0032839 ! dendrite cytoplasm -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: has_target_end_location GO:0098794 ! postsynapse -relationship: occurs_in GO:0032839 ! dendrite cytoplasm -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: BFO:0000066 GO:0032839 ! occurs in dendrite cytoplasm +intersection_of: RO:0002339 GO:0098794 ! has target end location postsynapse +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: BFO:0000066 GO:0032839 ! occurs in dendrite cytoplasm +relationship: RO:0002339 GO:0098794 ! has target end location postsynapse +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule [Term] id: GO:0098960 @@ -113155,7 +112622,7 @@ synonym: "neurotransmitter receptor activity involved in chemical synaptic trans is_a: GO:0030594 ! neurotransmitter receptor activity intersection_of: GO:0030594 ! neurotransmitter receptor activity intersection_of: part_of GO:0007268 ! chemical synaptic transmission -relationship: occurs_in GO:0045211 ! postsynaptic membrane +relationship: BFO:0000066 GO:0045211 ! occurs in postsynaptic membrane relationship: part_of GO:0007268 ! chemical synaptic transmission relationship: part_of GO:0099565 ! chemical synaptic transmission, postsynaptic @@ -113169,27 +112636,27 @@ synonym: "dendritic transport of RNP complex" EXACT [] is_a: GO:0031503 ! protein-containing complex localization is_a: GO:0098935 ! dendritic transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input GO:1990904 ! ribonucleoprotein complex -intersection_of: occurs_in GO:0032839 ! dendrite cytoplasm -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: has_primary_input GO:1990904 ! ribonucleoprotein complex -relationship: occurs_in GO:0032839 ! dendrite cytoplasm -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: BFO:0000066 GO:0032839 ! occurs in dendrite cytoplasm +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +intersection_of: RO:0004009 GO:1990904 ! has primary input ribonucleoprotein complex +relationship: BFO:0000066 GO:0032839 ! occurs in dendrite cytoplasm +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: RO:0004009 GO:1990904 ! has primary input ribonucleoprotein complex [Term] id: GO:0098962 name: regulation of postsynaptic neurotransmitter receptor activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of neurotransmitter receptor activity involved in synaptic transmission. Modulation may be via an effect on ligand affinity, or effector function such as ion selectivity or pore opening/closing in ionotropic receptors." [GOC:dos] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate subset: goslim_synapse is_a: GO:0031644 ! regulation of nervous system process is_a: GO:0050804 ! modulation of chemical synaptic transmission is_a: GO:0099601 ! regulation of neurotransmitter receptor activity intersection_of: GO:0065009 ! regulation of molecular function -intersection_of: regulates GO:0098960 ! postsynaptic neurotransmitter receptor activity -relationship: regulates GO:0050877 ! nervous system process -relationship: regulates GO:0098960 ! postsynaptic neurotransmitter receptor activity +intersection_of: RO:0002211 GO:0098960 ! regulates (processual) postsynaptic neurotransmitter receptor activity +relationship: RO:0002211 GO:0050877 ! regulates (processual) nervous system process +relationship: RO:0002211 GO:0098960 ! regulates (processual) postsynaptic neurotransmitter receptor activity [Term] id: GO:0098967 @@ -113215,11 +112682,11 @@ is_a: GO:0099072 ! regulation of postsynaptic membrane neurotransmitter receptor is_a: GO:1903539 ! protein localization to postsynaptic membrane is_a: GO:1903540 ! establishment of protein localization to postsynaptic membrane intersection_of: GO:0015031 ! protein transport -intersection_of: has_primary_input GO:0098878 ! neurotransmitter receptor complex -intersection_of: has_target_end_location GO:0045211 ! postsynaptic membrane -relationship: has_primary_input GO:0098878 ! neurotransmitter receptor complex -relationship: has_target_end_location GO:0045211 ! postsynaptic membrane -relationship: process_has_causal_agent GO:0031982 ! vesicle +intersection_of: RO:0002339 GO:0045211 ! has target end location postsynaptic membrane +intersection_of: RO:0004009 GO:0098878 ! has primary input neurotransmitter receptor complex +relationship: RO:0002339 GO:0045211 ! has target end location postsynaptic membrane +relationship: RO:0002608 GO:0031982 ! process has causal agent vesicle +relationship: RO:0004009 GO:0098878 ! has primary input neurotransmitter receptor complex [Term] id: GO:0098971 @@ -113230,14 +112697,14 @@ subset: goslim_synapse is_a: GO:0097120 ! receptor localization to synapse is_a: GO:0098937 ! anterograde dendritic transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input GO:0098878 ! neurotransmitter receptor complex -intersection_of: has_target_end_location GO:0098794 ! postsynapse -intersection_of: occurs_in GO:0032839 ! dendrite cytoplasm -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: has_primary_input GO:0098878 ! neurotransmitter receptor complex -relationship: has_target_end_location GO:0098794 ! postsynapse -relationship: occurs_in GO:0032839 ! dendrite cytoplasm -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: BFO:0000066 GO:0032839 ! occurs in dendrite cytoplasm +intersection_of: RO:0002339 GO:0098794 ! has target end location postsynapse +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +intersection_of: RO:0004009 GO:0098878 ! has primary input neurotransmitter receptor complex +relationship: BFO:0000066 GO:0032839 ! occurs in dendrite cytoplasm +relationship: RO:0002339 GO:0098794 ! has target end location postsynapse +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: RO:0004009 GO:0098878 ! has primary input neurotransmitter receptor complex [Term] id: GO:0098974 @@ -113248,9 +112715,9 @@ subset: goslim_synapse is_a: GO:0030036 ! actin cytoskeleton organization is_a: GO:0099188 ! postsynaptic cytoskeleton organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0098871 ! postsynaptic actin cytoskeleton +intersection_of: RO:0002592 GO:0098871 ! results in organization of postsynaptic actin cytoskeleton relationship: part_of GO:0050808 ! synapse organization -relationship: results_in_organization_of GO:0098871 ! postsynaptic actin cytoskeleton +relationship: RO:0002592 GO:0098871 ! results in organization of postsynaptic actin cytoskeleton [Term] id: GO:0098975 @@ -113317,8 +112784,8 @@ synonym: "G-protein coupled glutamate receptor activity" EXACT [] is_a: GO:0004930 ! G protein-coupled receptor activity is_a: GO:0008066 ! glutamate receptor activity intersection_of: GO:0004930 ! G protein-coupled receptor activity -intersection_of: has_primary_input CHEBI:14321 ! glutamate(1-) -relationship: has_primary_input CHEBI:14321 ! glutamate(1-) +intersection_of: RO:0004009 CHEBI:14321 ! has primary input glutamate(1-) +relationship: RO:0004009 CHEBI:14321 ! has primary input glutamate(1-) [Term] id: GO:0098992 @@ -113339,10 +112806,10 @@ def: "Any vesicle-mediated transport that occurs in a synapse." [GOC:dos] subset: goslim_synapse is_a: GO:0016192 ! vesicle-mediated transport intersection_of: GO:0016192 ! vesicle-mediated transport -intersection_of: occurs_in GO:0045202 ! synapse +intersection_of: BFO:0000066 GO:0045202 ! occurs in synapse +relationship: BFO:0000066 GO:0045202 ! occurs in synapse relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: occurs_in GO:0045202 ! synapse -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa [Term] id: GO:0099012 @@ -113363,8 +112830,8 @@ namespace: biological_process def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a neuronal dense core vesicle." [GOC:dos] is_a: GO:0061109 ! dense core granule organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0098992 ! neuronal dense core vesicle -relationship: results_in_organization_of GO:0098992 ! neuronal dense core vesicle +intersection_of: RO:0002592 GO:0098992 ! results in organization of neuronal dense core vesicle +relationship: RO:0002592 GO:0098992 ! results in organization of neuronal dense core vesicle [Term] id: GO:0099054 @@ -113377,9 +112844,9 @@ synonym: "presynaptic terminal assembly" EXACT [PMID:24449494] is_a: GO:0022607 ! cellular component assembly is_a: GO:0099172 ! presynapse organization intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_assembly_of GO:0098793 ! presynapse +intersection_of: RO:0002588 GO:0098793 ! results in assembly of presynapse relationship: part_of GO:0007416 ! synapse assembly -relationship: results_in_assembly_of GO:0098793 ! presynapse +relationship: RO:0002588 GO:0098793 ! results in assembly of presynapse [Term] id: GO:0099068 @@ -113390,9 +112857,9 @@ synonym: "postsynapse biogenesis" EXACT [GOC:mah] is_a: GO:0022607 ! cellular component assembly is_a: GO:0099173 ! postsynapse organization intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_assembly_of GO:0098794 ! postsynapse +intersection_of: RO:0002588 GO:0098794 ! results in assembly of postsynapse relationship: part_of GO:0007416 ! synapse assembly -relationship: results_in_assembly_of GO:0098794 ! postsynapse +relationship: RO:0002588 GO:0098794 ! results in assembly of postsynapse [Term] id: GO:0099072 @@ -113407,7 +112874,7 @@ id: GO:0099080 name: supramolecular complex namespace: cellular_component def: "A cellular component that consists of an indeterminate number of proteins or macromolecular complexes, organized into a regular, higher-order structure such as a polymer, sheet, network or a fiber." [GOC:dos] -is_a: GO:0110165 ! cellular anatomical entity +is_a: GO:0110165 ! cellular anatomical structure [Term] id: GO:0099081 @@ -113416,8 +112883,8 @@ namespace: cellular_component def: "A polymeric supramolecular structure." [GOC:dos] is_a: GO:0099080 ! supramolecular complex intersection_of: GO:0099080 ! supramolecular complex -intersection_of: has_characteristic PATO:0015006 ! polymeric -relationship: has_characteristic PATO:0015006 ! polymeric +intersection_of: RO:0000053 PATO:0015006 ! has characteristic polymeric +relationship: RO:0000053 PATO:0015006 ! has characteristic polymeric [Term] id: GO:0099082 @@ -113428,12 +112895,12 @@ subset: goslim_synapse is_a: GO:0098917 ! retrograde trans-synaptic signaling is_a: GO:0099540 ! trans-synaptic signaling by neuropeptide intersection_of: GO:0099537 ! trans-synaptic signaling -intersection_of: has_end_location GO:0098793 ! presynapse -intersection_of: has_start_location GO:0098794 ! postsynapse -intersection_of: process_has_causal_agent CHEBI:60466 ! peptide zwitterion -relationship: has_end_location GO:0098793 ! presynapse -relationship: has_start_location GO:0098794 ! postsynapse -relationship: process_has_causal_agent CHEBI:60466 ! peptide zwitterion +intersection_of: RO:0002231 GO:0098794 ! has start location postsynapse +intersection_of: RO:0002232 GO:0098793 ! has end location presynapse +intersection_of: RO:0002608 CHEBI:60466 ! process has causal agent peptide zwitterion +relationship: RO:0002231 GO:0098794 ! has start location postsynapse +relationship: RO:0002232 GO:0098793 ! has end location presynapse +relationship: RO:0002608 CHEBI:60466 ! process has causal agent peptide zwitterion [Term] id: GO:0099083 @@ -113445,14 +112912,14 @@ subset: goslim_synapse is_a: GO:0099082 ! retrograde trans-synaptic signaling by neuropeptide is_a: GO:0099551 ! trans-synaptic signaling by neuropeptide, modulating synaptic transmission intersection_of: GO:0099537 ! trans-synaptic signaling -intersection_of: has_end_location GO:0098793 ! presynapse -intersection_of: has_start_location GO:0098794 ! postsynapse -intersection_of: process_has_causal_agent CHEBI:60466 ! peptide zwitterion -intersection_of: regulates GO:0007268 ! chemical synaptic transmission -relationship: has_end_location GO:0098793 ! presynapse -relationship: has_start_location GO:0098794 ! postsynapse -relationship: process_has_causal_agent CHEBI:60466 ! peptide zwitterion -relationship: regulates GO:0007268 ! chemical synaptic transmission +intersection_of: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +intersection_of: RO:0002231 GO:0098794 ! has start location postsynapse +intersection_of: RO:0002232 GO:0098793 ! has end location presynapse +intersection_of: RO:0002608 CHEBI:60466 ! process has causal agent peptide zwitterion +relationship: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +relationship: RO:0002231 GO:0098794 ! has start location postsynapse +relationship: RO:0002232 GO:0098793 ! has end location presynapse +relationship: RO:0002608 CHEBI:60466 ! process has causal agent peptide zwitterion [Term] id: GO:0099098 @@ -113471,8 +112938,8 @@ namespace: biological_process def: "A microtubule-based process that results in the transport of organelles, other microtubules, or other cellular components. Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules." [GOC:cjm, ISBN:0815316194] is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: process_has_causal_agent GO:0005874 ! microtubule -relationship: process_has_causal_agent GO:0005874 ! microtubule +intersection_of: RO:0002608 GO:0005874 ! process has causal agent microtubule +relationship: RO:0002608 GO:0005874 ! process has causal agent microtubule [Term] id: GO:0099112 @@ -113485,11 +112952,11 @@ is_a: GO:0046907 ! intracellular transport is_a: GO:0099111 ! microtubule-based transport intersection_of: GO:0046907 ! intracellular transport intersection_of: has_part GO:0046785 ! microtubule polymerization -intersection_of: has_primary_input CHEBI:36080 ! protein -intersection_of: process_has_causal_agent GO:0005874 ! microtubule +intersection_of: RO:0002608 GO:0005874 ! process has causal agent microtubule +intersection_of: RO:0004009 CHEBI:36080 ! has primary input protein relationship: has_part GO:0046785 ! microtubule polymerization -relationship: has_primary_input CHEBI:36080 ! protein -relationship: process_has_causal_agent GO:0005874 ! microtubule +relationship: RO:0002608 GO:0005874 ! process has causal agent microtubule +relationship: RO:0004009 CHEBI:36080 ! has primary input protein [Term] id: GO:0099118 @@ -113500,10 +112967,10 @@ is_a: GO:0007017 ! microtubule-based process is_a: GO:0015031 ! protein transport is_a: GO:0099111 ! microtubule-based transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input PR:000000001 ! protein -intersection_of: process_has_causal_agent GO:0005874 ! microtubule -relationship: has_primary_input PR:000000001 ! protein -relationship: process_has_causal_agent GO:0005874 ! microtubule +intersection_of: RO:0002608 GO:0005874 ! process has causal agent microtubule +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: RO:0002608 GO:0005874 ! process has causal agent microtubule +relationship: RO:0004009 PR:000000001 ! has primary input protein [Term] id: GO:0099123 @@ -113516,8 +112983,8 @@ synonym: "STD dopamine release" EXACT [PMID:21576241] is_a: GO:0014046 ! dopamine secretion is_a: GO:0051649 ! establishment of localization in cell intersection_of: GO:0014046 ! dopamine secretion -intersection_of: occurs_in GO:0036477 ! somatodendritic compartment -relationship: occurs_in GO:0036477 ! somatodendritic compartment +intersection_of: BFO:0000066 GO:0036477 ! occurs in somatodendritic compartment +relationship: BFO:0000066 GO:0036477 ! occurs in somatodendritic compartment [Term] id: GO:0099124 @@ -113529,8 +112996,8 @@ synonym: "axonal dopamine release" EXACT [PMID:21576241] is_a: GO:0014046 ! dopamine secretion is_a: GO:0051649 ! establishment of localization in cell intersection_of: GO:0014046 ! dopamine secretion -intersection_of: occurs_in GO:0030424 ! axon -relationship: occurs_in GO:0030424 ! axon +intersection_of: BFO:0000066 GO:0030424 ! occurs in axon +relationship: BFO:0000066 GO:0030424 ! occurs in axon [Term] id: GO:0099140 @@ -113541,8 +113008,8 @@ subset: goslim_synapse is_a: GO:0030036 ! actin cytoskeleton organization is_a: GO:0099187 ! presynaptic cytoskeleton organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0099143 ! presynaptic actin cytoskeleton -relationship: results_in_organization_of GO:0099143 ! presynaptic actin cytoskeleton +intersection_of: RO:0002592 GO:0099143 ! results in organization of presynaptic actin cytoskeleton +relationship: RO:0002592 GO:0099143 ! results in organization of presynaptic actin cytoskeleton created_by: dos creation_date: 2017-06-09T18:34:19Z @@ -113572,12 +113039,12 @@ is_a: GO:1902683 ! regulation of receptor localization to synapse is_a: GO:1904375 ! regulation of protein localization to cell periphery is_a: GO:1905475 ! regulation of protein localization to membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0098967 ! exocytic insertion of neurotransmitter receptor to postsynaptic membrane -relationship: regulates GO:0015031 ! protein transport -relationship: regulates GO:0072657 ! protein localization to membrane -relationship: regulates GO:0097120 ! receptor localization to synapse -relationship: regulates GO:0098967 ! exocytic insertion of neurotransmitter receptor to postsynaptic membrane -relationship: regulates GO:1990778 ! protein localization to cell periphery +intersection_of: RO:0002211 GO:0098967 ! regulates (processual) exocytic insertion of neurotransmitter receptor to postsynaptic membrane +relationship: RO:0002211 GO:0015031 ! regulates (processual) protein transport +relationship: RO:0002211 GO:0072657 ! regulates (processual) protein localization to membrane +relationship: RO:0002211 GO:0097120 ! regulates (processual) receptor localization to synapse +relationship: RO:0002211 GO:0098967 ! regulates (processual) exocytic insertion of neurotransmitter receptor to postsynaptic membrane +relationship: RO:0002211 GO:1990778 ! regulates (processual) protein localization to cell periphery created_by: dos creation_date: 2017-06-09T18:49:26Z @@ -113589,8 +113056,8 @@ def: "Cell-cell signaling in which the ligand is carried between cells by an exo synonym: "exosome mediated" EXACT [] is_a: GO:0007267 ! cell-cell signaling intersection_of: GO:0007267 ! cell-cell signaling -intersection_of: process_has_causal_agent GO:0070062 ! extracellular exosome -relationship: process_has_causal_agent GO:0070062 ! extracellular exosome +intersection_of: RO:0002608 GO:0070062 ! process has causal agent extracellular exosome +relationship: RO:0002608 GO:0070062 ! process has causal agent extracellular exosome created_by: dos creation_date: 2017-07-05T16:40:45Z @@ -113605,8 +113072,8 @@ synonym: "trans-synaptic signalling via exosome" EXACT [] is_a: GO:0099156 ! cell-cell signaling via exosome is_a: GO:0099537 ! trans-synaptic signaling intersection_of: GO:0099537 ! trans-synaptic signaling -intersection_of: process_has_causal_agent GO:0070062 ! extracellular exosome -relationship: process_has_causal_agent GO:0070062 ! extracellular exosome +intersection_of: RO:0002608 GO:0070062 ! process has causal agent extracellular exosome +relationship: RO:0002608 GO:0070062 ! process has causal agent extracellular exosome created_by: dos creation_date: 2017-07-05T16:49:44Z @@ -113632,8 +113099,8 @@ def: "Any process, acting in the postsynapse that results in modulation of chemi subset: goslim_synapse is_a: GO:0050804 ! modulation of chemical synaptic transmission intersection_of: GO:0050804 ! modulation of chemical synaptic transmission -intersection_of: occurs_in GO:0098794 ! postsynapse -relationship: occurs_in GO:0098794 ! postsynapse +intersection_of: BFO:0000066 GO:0098794 ! occurs in postsynapse +relationship: BFO:0000066 GO:0098794 ! occurs in postsynapse created_by: dos creation_date: 2017-09-11T17:09:17Z @@ -113645,8 +113112,8 @@ def: "Any process, acting in the presynapse that results in modulation of chemic subset: goslim_synapse is_a: GO:0050804 ! modulation of chemical synaptic transmission intersection_of: GO:0050804 ! modulation of chemical synaptic transmission -intersection_of: occurs_in GO:0098793 ! presynapse -relationship: occurs_in GO:0098793 ! presynapse +intersection_of: BFO:0000066 GO:0098793 ! occurs in presynapse +relationship: BFO:0000066 GO:0098793 ! occurs in presynapse created_by: dos creation_date: 2017-09-11T17:09:31Z @@ -113662,9 +113129,9 @@ synonym: "presynapse organisation" EXACT [] synonym: "presynapse organization and biogenesis" RELATED [GOC:mah] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_organization_of GO:0098793 ! presynapse +intersection_of: RO:0002592 GO:0098793 ! results in organization of presynapse relationship: part_of GO:0050808 ! synapse organization -relationship: results_in_organization_of GO:0098793 ! presynapse +relationship: RO:0002592 GO:0098793 ! results in organization of presynapse [Term] id: GO:0099173 @@ -113678,9 +113145,9 @@ synonym: "postsynapse organisation" EXACT [] synonym: "postsynapse organization and biogenesis" RELATED [GOC:mah] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_organization_of GO:0098794 ! postsynapse +intersection_of: RO:0002592 GO:0098794 ! results in organization of postsynapse relationship: part_of GO:0050808 ! synapse organization -relationship: results_in_organization_of GO:0098794 ! postsynapse +relationship: RO:0002592 GO:0098794 ! results in organization of postsynapse [Term] id: GO:0099174 @@ -113693,10 +113160,10 @@ synonym: "regulation of presynapse organization and biogenesis" RELATED [GOC:mah synonym: "regulation of presynapse structure" EXACT [] is_a: GO:0050807 ! regulation of synapse organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0099172 ! presynapse organization +intersection_of: RO:0002211 GO:0099172 ! regulates (processual) presynapse organization relationship: part_of GO:0050803 ! regulation of synapse structure or activity -relationship: regulates GO:0050808 ! synapse organization -relationship: regulates GO:0099172 ! presynapse organization +relationship: RO:0002211 GO:0050808 ! regulates (processual) synapse organization +relationship: RO:0002211 GO:0099172 ! regulates (processual) presynapse organization [Term] id: GO:0099175 @@ -113709,10 +113176,10 @@ synonym: "regulation of postsynapse organization and biogenesis" RELATED [GOC:ma synonym: "regulation of postsynapse structure" EXACT [] is_a: GO:0050807 ! regulation of synapse organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0099173 ! postsynapse organization +intersection_of: RO:0002211 GO:0099173 ! regulates (processual) postsynapse organization relationship: part_of GO:0050803 ! regulation of synapse structure or activity -relationship: regulates GO:0050808 ! synapse organization -relationship: regulates GO:0099173 ! postsynapse organization +relationship: RO:0002211 GO:0050808 ! regulates (processual) synapse organization +relationship: RO:0002211 GO:0099173 ! regulates (processual) postsynapse organization [Term] id: GO:0099177 @@ -113722,8 +113189,8 @@ def: "Any process that modulates the frequency, rate or extent of trans-synaptic is_a: GO:0010646 ! regulation of cell communication is_a: GO:0023051 ! regulation of signaling intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0099537 ! trans-synaptic signaling -relationship: regulates GO:0099537 ! trans-synaptic signaling +intersection_of: RO:0002211 GO:0099537 ! regulates (processual) trans-synaptic signaling +relationship: RO:0002211 GO:0099537 ! regulates (processual) trans-synaptic signaling [Term] id: GO:0099182 @@ -113748,9 +113215,9 @@ subset: goslim_synapse is_a: GO:0045104 ! intermediate filament cytoskeleton organization is_a: GO:0099188 ! postsynaptic cytoskeleton organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0099160 ! postsynaptic intermediate filament cytoskeleton +intersection_of: RO:0002592 GO:0099160 ! results in organization of postsynaptic intermediate filament cytoskeleton relationship: part_of GO:0050808 ! synapse organization -relationship: results_in_organization_of GO:0099160 ! postsynaptic intermediate filament cytoskeleton +relationship: RO:0002592 GO:0099160 ! results in organization of postsynaptic intermediate filament cytoskeleton created_by: dos creation_date: 2017-12-20T13:47:30Z @@ -113761,9 +113228,9 @@ namespace: biological_process def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures and their associated proteins in the presynaptic cytoskeleton." [GOC:dos] is_a: GO:0007010 ! cytoskeleton organization intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_organization_of GO:0099569 ! presynaptic cytoskeleton +intersection_of: RO:0002592 GO:0099569 ! results in organization of presynaptic cytoskeleton relationship: part_of GO:0099172 ! presynapse organization -relationship: results_in_organization_of GO:0099569 ! presynaptic cytoskeleton +relationship: RO:0002592 GO:0099569 ! results in organization of presynaptic cytoskeleton created_by: dos creation_date: 2017-12-20T15:05:34Z @@ -113775,9 +113242,9 @@ def: "A process that is carried out at the cellular level which results in the a subset: goslim_synapse is_a: GO:0007010 ! cytoskeleton organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0099571 ! postsynaptic cytoskeleton +intersection_of: RO:0002592 GO:0099571 ! results in organization of postsynaptic cytoskeleton relationship: part_of GO:0099173 ! postsynapse organization -relationship: results_in_organization_of GO:0099571 ! postsynaptic cytoskeleton +relationship: RO:0002592 GO:0099571 ! results in organization of postsynaptic cytoskeleton created_by: dos creation_date: 2017-12-20T15:06:57Z @@ -113790,11 +113257,11 @@ is_a: GO:0006906 ! vesicle fusion is_a: GO:0140029 ! exocytic process intersection_of: GO:0061025 ! membrane fusion intersection_of: part_of GO:0006887 ! exocytosis -intersection_of: results_in_fusion_of GO:0012506 ! vesicle membrane -intersection_of: results_in_fusion_of GO:0098590 ! plasma membrane region +intersection_of: RO:0012008 GO:0012506 ! results in fusion of vesicle membrane +intersection_of: RO:0012008 GO:0098590 ! results in fusion of plasma membrane region relationship: part_of GO:0006887 ! exocytosis -relationship: results_in_fusion_of GO:0012506 ! vesicle membrane -relationship: results_in_fusion_of GO:0098590 ! plasma membrane region +relationship: RO:0012008 GO:0012506 ! results in fusion of vesicle membrane +relationship: RO:0012008 GO:0098590 ! results in fusion of plasma membrane region [Term] id: GO:0099501 @@ -113827,7 +113294,7 @@ def: "A biological process in which synaptic vesicles are loaded with neurotrans subset: goslim_synapse is_a: GO:0051649 ! establishment of localization in cell is_a: GO:0099003 ! vesicle-mediated transport in synapse -relationship: occurs_in GO:0098793 ! presynapse +relationship: BFO:0000066 GO:0098793 ! occurs in presynapse [Term] id: GO:0099512 @@ -113838,10 +113305,10 @@ def: "A polymer consisting of an indefinite number of protein or protein complex synonym: "fibril" RELATED [] is_a: GO:0099081 ! supramolecular polymer intersection_of: GO:0099080 ! supramolecular complex -intersection_of: has_characteristic PATO:0002309 ! fiber shaped -intersection_of: has_characteristic PATO:0015006 ! polymeric -relationship: has_characteristic PATO:0002309 ! fiber shaped -relationship: has_characteristic PATO:0015006 ! polymeric +intersection_of: RO:0000053 PATO:0002309 ! has characteristic fiber shaped +intersection_of: RO:0000053 PATO:0015006 ! has characteristic polymeric +relationship: RO:0000053 PATO:0002309 ! has characteristic fiber shaped +relationship: RO:0000053 PATO:0015006 ! has characteristic polymeric [Term] id: GO:0099513 @@ -113850,10 +113317,10 @@ namespace: cellular_component def: "A component of the cytoskeleton consisting of a homo or heteropolymeric fiber constructed from an indeterminate number of protein subunits." [GOC:dos] is_a: GO:0099512 ! supramolecular fiber intersection_of: GO:0099512 ! supramolecular fiber -intersection_of: has_characteristic PATO:0015006 ! polymeric intersection_of: part_of GO:0005856 ! cytoskeleton -relationship: has_characteristic PATO:0015006 ! polymeric +intersection_of: RO:0000053 PATO:0015006 ! has characteristic polymeric relationship: part_of GO:0005856 ! cytoskeleton +relationship: RO:0000053 PATO:0015006 ! has characteristic polymeric [Term] id: GO:0099515 @@ -113862,8 +113329,8 @@ namespace: biological_process def: "The transport of organelles or other particles from one location in the cell to another along actin filaments." [GOC:dos, GOC:dph, GOC:mah, GOC:tb] is_a: GO:0030705 ! cytoskeleton-dependent intracellular transport intersection_of: GO:0046907 ! intracellular transport -intersection_of: results_in_transport_along GO:0005884 ! actin filament -relationship: results_in_transport_along GO:0005884 ! actin filament +intersection_of: RO:0002341 GO:0005884 ! results in transport along actin filament +relationship: RO:0002341 GO:0005884 ! results in transport along actin filament created_by: tb creation_date: 2009-05-27T10:56:08Z @@ -113877,10 +113344,10 @@ synonym: "vesicle cytoskeletal transport" EXACT [] is_a: GO:0030705 ! cytoskeleton-dependent intracellular transport is_a: GO:0051650 ! establishment of vesicle localization intersection_of: GO:0046907 ! intracellular transport -intersection_of: has_primary_input GO:0031982 ! vesicle -intersection_of: results_in_transport_along GO:0099513 ! polymeric cytoskeletal fiber -relationship: has_primary_input GO:0031982 ! vesicle -relationship: results_in_transport_along GO:0099513 ! polymeric cytoskeletal fiber +intersection_of: RO:0002341 GO:0099513 ! results in transport along polymeric cytoskeletal fiber +intersection_of: RO:0004009 GO:0031982 ! has primary input vesicle +relationship: RO:0002341 GO:0099513 ! results in transport along polymeric cytoskeletal fiber +relationship: RO:0004009 GO:0031982 ! has primary input vesicle [Term] id: GO:0099519 @@ -113891,12 +113358,12 @@ synonym: "dense core vesicle cytoskeletal trafficking" EXACT [] is_a: GO:0099518 ! vesicle cytoskeletal trafficking is_a: GO:1901950 ! dense core granule transport intersection_of: GO:0046907 ! intracellular transport -intersection_of: has_primary_input GO:0031045 ! dense core granule -intersection_of: occurs_in GO:0030424 ! axon -intersection_of: results_in_transport_along GO:0099513 ! polymeric cytoskeletal fiber -relationship: has_primary_input GO:0031045 ! dense core granule -relationship: occurs_in GO:0030424 ! axon -relationship: results_in_transport_along GO:0099513 ! polymeric cytoskeletal fiber +intersection_of: BFO:0000066 GO:0030424 ! occurs in axon +intersection_of: RO:0002341 GO:0099513 ! results in transport along polymeric cytoskeletal fiber +intersection_of: RO:0004009 GO:0031045 ! has primary input dense core granule +relationship: BFO:0000066 GO:0030424 ! occurs in axon +relationship: RO:0002341 GO:0099513 ! results in transport along polymeric cytoskeletal fiber +relationship: RO:0004009 GO:0031045 ! has primary input dense core granule [Term] id: GO:0099522 @@ -113955,7 +113422,7 @@ subset: goslim_synapse is_a: GO:0098960 ! postsynaptic neurotransmitter receptor activity intersection_of: GO:0030594 ! neurotransmitter receptor activity intersection_of: part_of GO:0060078 ! regulation of postsynaptic membrane potential -relationship: occurs_in GO:0045211 ! postsynaptic membrane +relationship: BFO:0000066 GO:0045211 ! occurs in postsynaptic membrane relationship: part_of GO:0060078 ! regulation of postsynaptic membrane potential relationship: part_of GO:0099565 ! chemical synaptic transmission, postsynaptic @@ -113969,7 +113436,7 @@ synonym: "G-protein coupled receptor activity involved in regulation of postsyna is_a: GO:0004930 ! G protein-coupled receptor activity intersection_of: GO:0004930 ! G protein-coupled receptor activity intersection_of: part_of GO:0060078 ! regulation of postsynaptic membrane potential -relationship: occurs_in GO:0045211 ! postsynaptic membrane +relationship: BFO:0000066 GO:0045211 ! occurs in postsynaptic membrane relationship: part_of GO:0060078 ! regulation of postsynaptic membrane potential [Term] @@ -113977,13 +113444,13 @@ id: GO:0099531 name: presynaptic process involved in chemical synaptic transmission namespace: biological_process def: "The pathway leading to secretion of a neurotransmitter from the presynapse as part of synaptic transmission." [GOC:dos] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate subset: goslim_synapse is_a: GO:0050877 ! nervous system process intersection_of: GO:0050877 ! nervous system process -intersection_of: occurs_in GO:0098793 ! presynapse +intersection_of: BFO:0000066 GO:0098793 ! occurs in presynapse intersection_of: part_of GO:0007268 ! chemical synaptic transmission -relationship: occurs_in GO:0098793 ! presynapse +relationship: BFO:0000066 GO:0098793 ! occurs in presynapse relationship: part_of GO:0007268 ! chemical synaptic transmission [Term] @@ -113995,10 +113462,10 @@ subset: goslim_drosophila subset: goslim_synapse is_a: GO:0007267 ! cell-cell signaling intersection_of: GO:0007267 ! cell-cell signaling -intersection_of: occurs_in GO:0045202 ! synapse +intersection_of: BFO:0000066 GO:0045202 ! occurs in synapse +relationship: BFO:0000066 GO:0045202 ! occurs in synapse relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: occurs_in GO:0045202 ! synapse -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa [Term] id: GO:0099537 @@ -114016,8 +113483,8 @@ def: "Cell-cell signaling to or from a synapse, mediated by a peptide." [GOC:dos subset: goslim_synapse is_a: GO:0099536 ! synaptic signaling intersection_of: GO:0099536 ! synaptic signaling -intersection_of: process_has_causal_agent CHEBI:60466 ! peptide zwitterion -relationship: process_has_causal_agent CHEBI:60466 ! peptide zwitterion +intersection_of: RO:0002608 CHEBI:60466 ! process has causal agent peptide zwitterion +relationship: RO:0002608 CHEBI:60466 ! process has causal agent peptide zwitterion [Term] id: GO:0099540 @@ -114028,8 +113495,8 @@ subset: goslim_synapse is_a: GO:0099537 ! trans-synaptic signaling is_a: GO:0099538 ! synaptic signaling via neuropeptide intersection_of: GO:0099537 ! trans-synaptic signaling -intersection_of: process_has_causal_agent CHEBI:60466 ! peptide zwitterion -relationship: process_has_causal_agent CHEBI:60466 ! peptide zwitterion +intersection_of: RO:0002608 CHEBI:60466 ! process has causal agent peptide zwitterion +relationship: RO:0002608 CHEBI:60466 ! process has causal agent peptide zwitterion [Term] id: GO:0099541 @@ -114039,8 +113506,8 @@ def: "Cell-cell signaling from post to pre-synapse, across the synaptic cleft, m subset: goslim_synapse is_a: GO:0099537 ! trans-synaptic signaling intersection_of: GO:0099537 ! trans-synaptic signaling -intersection_of: process_has_causal_agent CHEBI:18059 ! lipid -relationship: process_has_causal_agent CHEBI:18059 ! lipid +intersection_of: RO:0002608 CHEBI:18059 ! process has causal agent lipid +relationship: RO:0002608 CHEBI:18059 ! process has causal agent lipid [Term] id: GO:0099546 @@ -114051,14 +113518,14 @@ comment: Note that this term was created for the SynGO project, and will be obso subset: goslim_synapse is_a: GO:0140246 ! protein catabolic process at synapse intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:36080 ! protein -intersection_of: occurs_in GO:0045202 ! synapse -intersection_of: regulates GO:0007268 ! chemical synaptic transmission -relationship: has_primary_input CHEBI:36080 ! protein +intersection_of: BFO:0000066 GO:0045202 ! occurs in synapse +intersection_of: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +intersection_of: RO:0004009 CHEBI:36080 ! has primary input protein +relationship: BFO:0000066 GO:0045202 ! occurs in synapse relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: occurs_in GO:0045202 ! synapse -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa -relationship: regulates GO:0007268 ! chemical synaptic transmission +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +relationship: RO:0004009 CHEBI:36080 ! has primary input protein [Term] id: GO:0099547 @@ -114070,14 +113537,14 @@ subset: goslim_synapse is_a: GO:0050804 ! modulation of chemical synaptic transmission is_a: GO:0140243 ! regulation of translation at synapse intersection_of: GO:0065007 ! biological regulation -intersection_of: occurs_in GO:0045202 ! synapse -intersection_of: regulates GO:0006412 ! translation -intersection_of: regulates GO:0007268 ! chemical synaptic transmission +intersection_of: BFO:0000066 GO:0045202 ! occurs in synapse +intersection_of: RO:0002211 GO:0006412 ! regulates (processual) translation +intersection_of: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +relationship: BFO:0000066 GO:0045202 ! occurs in synapse relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: occurs_in GO:0045202 ! synapse -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa -relationship: regulates GO:0006412 ! translation -relationship: regulates GO:0007268 ! chemical synaptic transmission +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0002211 GO:0006412 ! regulates (processual) translation +relationship: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission [Term] id: GO:0099550 @@ -114089,8 +113556,8 @@ subset: goslim_synapse is_a: GO:0050804 ! modulation of chemical synaptic transmission is_a: GO:0099537 ! trans-synaptic signaling intersection_of: GO:0099537 ! trans-synaptic signaling -intersection_of: regulates GO:0007268 ! chemical synaptic transmission -relationship: regulates GO:0007268 ! chemical synaptic transmission +intersection_of: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +relationship: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission [Term] id: GO:0099551 @@ -114102,10 +113569,10 @@ subset: goslim_synapse is_a: GO:0099540 ! trans-synaptic signaling by neuropeptide is_a: GO:0099550 ! trans-synaptic signaling, modulating synaptic transmission intersection_of: GO:0099537 ! trans-synaptic signaling -intersection_of: process_has_causal_agent CHEBI:60466 ! peptide zwitterion -intersection_of: regulates GO:0007268 ! chemical synaptic transmission -relationship: process_has_causal_agent CHEBI:60466 ! peptide zwitterion -relationship: regulates GO:0007268 ! chemical synaptic transmission +intersection_of: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +intersection_of: RO:0002608 CHEBI:60466 ! process has causal agent peptide zwitterion +relationship: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +relationship: RO:0002608 CHEBI:60466 ! process has causal agent peptide zwitterion [Term] id: GO:0099552 @@ -114117,10 +113584,10 @@ subset: goslim_synapse is_a: GO:0099541 ! trans-synaptic signaling by lipid is_a: GO:0099550 ! trans-synaptic signaling, modulating synaptic transmission intersection_of: GO:0099537 ! trans-synaptic signaling -intersection_of: process_has_causal_agent CHEBI:18059 ! lipid -intersection_of: regulates GO:0007268 ! chemical synaptic transmission -relationship: process_has_causal_agent CHEBI:18059 ! lipid -relationship: regulates GO:0007268 ! chemical synaptic transmission +intersection_of: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +intersection_of: RO:0002608 CHEBI:18059 ! process has causal agent lipid +relationship: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +relationship: RO:0002608 CHEBI:18059 ! process has causal agent lipid [Term] id: GO:0099565 @@ -114132,9 +113599,9 @@ synonym: "postsynaptic process involved in chemical synaptic transmission" EXACT is_a: GO:0007166 ! cell surface receptor signaling pathway is_a: GO:0050877 ! nervous system process intersection_of: GO:0007166 ! cell surface receptor signaling pathway -intersection_of: occurs_in GO:0098794 ! postsynapse +intersection_of: BFO:0000066 GO:0098794 ! occurs in postsynapse intersection_of: part_of GO:0007268 ! chemical synaptic transmission -relationship: occurs_in GO:0098794 ! postsynapse +relationship: BFO:0000066 GO:0098794 ! occurs in postsynapse relationship: part_of GO:0007268 ! chemical synaptic transmission [Term] @@ -114180,16 +113647,16 @@ subset: goslim_synapse is_a: GO:0050804 ! modulation of chemical synaptic transmission is_a: GO:0140250 ! regulation protein catabolic process at synapse intersection_of: GO:0065007 ! biological regulation -intersection_of: has_primary_input CHEBI:36080 ! protein -intersection_of: occurs_in GO:0045202 ! synapse -intersection_of: regulates GO:0007268 ! chemical synaptic transmission -intersection_of: regulates GO:0009056 ! catabolic process -relationship: has_primary_input CHEBI:36080 ! protein +intersection_of: BFO:0000066 GO:0045202 ! occurs in synapse +intersection_of: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +intersection_of: RO:0002211 GO:0009056 ! regulates (processual) catabolic process +intersection_of: RO:0004009 CHEBI:36080 ! has primary input protein +relationship: BFO:0000066 GO:0045202 ! occurs in synapse relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: occurs_in GO:0045202 ! synapse -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa -relationship: regulates GO:0007268 ! chemical synaptic transmission -relationship: regulates GO:0009056 ! catabolic process +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +relationship: RO:0002211 GO:0009056 ! regulates (processual) catabolic process +relationship: RO:0004009 CHEBI:36080 ! has primary input protein [Term] id: GO:0099575 @@ -114201,10 +113668,10 @@ subset: goslim_synapse is_a: GO:0042176 ! regulation of protein catabolic process is_a: GO:0099171 ! presynaptic modulation of chemical synaptic transmission intersection_of: GO:0042176 ! regulation of protein catabolic process -intersection_of: occurs_in GO:0098793 ! presynapse -intersection_of: regulates GO:0007268 ! chemical synaptic transmission -relationship: occurs_in GO:0098793 ! presynapse -relationship: regulates GO:0007268 ! chemical synaptic transmission +intersection_of: BFO:0000066 GO:0098793 ! occurs in presynapse +intersection_of: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +relationship: BFO:0000066 GO:0098793 ! occurs in presynapse +relationship: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission [Term] id: GO:0099576 @@ -114216,10 +113683,10 @@ subset: goslim_synapse is_a: GO:0042176 ! regulation of protein catabolic process is_a: GO:0099170 ! postsynaptic modulation of chemical synaptic transmission intersection_of: GO:0042176 ! regulation of protein catabolic process -intersection_of: occurs_in GO:0098794 ! postsynapse -intersection_of: regulates GO:0007268 ! chemical synaptic transmission -relationship: occurs_in GO:0098794 ! postsynapse -relationship: regulates GO:0007268 ! chemical synaptic transmission +intersection_of: BFO:0000066 GO:0098794 ! occurs in postsynapse +intersection_of: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +relationship: BFO:0000066 GO:0098794 ! occurs in postsynapse +relationship: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission [Term] id: GO:0099577 @@ -114232,12 +113699,12 @@ is_a: GO:0099171 ! presynaptic modulation of chemical synaptic transmission is_a: GO:0099547 ! regulation of translation at synapse, modulating synaptic transmission is_a: GO:0140244 ! regulation of translation at presynapse intersection_of: GO:0065007 ! biological regulation -intersection_of: occurs_in GO:0098793 ! presynapse -intersection_of: regulates GO:0006412 ! translation -intersection_of: regulates GO:0007268 ! chemical synaptic transmission -relationship: occurs_in GO:0098793 ! presynapse -relationship: regulates GO:0006412 ! translation -relationship: regulates GO:0007268 ! chemical synaptic transmission +intersection_of: BFO:0000066 GO:0098793 ! occurs in presynapse +intersection_of: RO:0002211 GO:0006412 ! regulates (processual) translation +intersection_of: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +relationship: BFO:0000066 GO:0098793 ! occurs in presynapse +relationship: RO:0002211 GO:0006412 ! regulates (processual) translation +relationship: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission [Term] id: GO:0099578 @@ -114250,12 +113717,12 @@ is_a: GO:0099170 ! postsynaptic modulation of chemical synaptic transmission is_a: GO:0099547 ! regulation of translation at synapse, modulating synaptic transmission is_a: GO:0140245 ! regulation of translation at postsynapse intersection_of: GO:0065007 ! biological regulation -intersection_of: occurs_in GO:0098794 ! postsynapse -intersection_of: regulates GO:0006412 ! translation -intersection_of: regulates GO:0007268 ! chemical synaptic transmission -relationship: occurs_in GO:0098794 ! postsynapse -relationship: regulates GO:0006412 ! translation -relationship: regulates GO:0007268 ! chemical synaptic transmission +intersection_of: BFO:0000066 GO:0098794 ! occurs in postsynapse +intersection_of: RO:0002211 GO:0006412 ! regulates (processual) translation +intersection_of: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +relationship: BFO:0000066 GO:0098794 ! occurs in postsynapse +relationship: RO:0002211 GO:0006412 ! regulates (processual) translation +relationship: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission [Term] id: GO:0099579 @@ -114269,7 +113736,7 @@ is_a: GO:0099529 ! neurotransmitter receptor activity involved in regulation of is_a: GO:0099530 ! G protein-coupled receptor activity involved in regulation of postsynaptic membrane potential intersection_of: GO:0099528 ! G protein-coupled neurotransmitter receptor activity intersection_of: part_of GO:0060078 ! regulation of postsynaptic membrane potential -relationship: occurs_in GO:0045211 ! postsynaptic membrane +relationship: BFO:0000066 GO:0045211 ! occurs in postsynaptic membrane relationship: part_of GO:0060078 ! regulation of postsynaptic membrane potential [Term] @@ -114281,15 +113748,15 @@ subset: goslim_synapse is_a: GO:0051209 ! release of sequestered calcium ion into cytosol is_a: GO:0051649 ! establishment of localization in cell intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29108 ! calcium(2+) -intersection_of: has_target_end_location GO:0099523 ! presynaptic cytosol -intersection_of: has_target_start_location GO:0043231 ! intracellular membrane-bounded organelle -intersection_of: results_in_transport_across GO:0031090 ! organelle membrane -relationship: has_primary_input CHEBI:29108 ! calcium(2+) -relationship: has_target_end_location GO:0099523 ! presynaptic cytosol -relationship: has_target_start_location GO:0043231 ! intracellular membrane-bounded organelle -relationship: occurs_in GO:0098793 ! presynapse -relationship: results_in_transport_across GO:0031090 ! organelle membrane +intersection_of: RO:0002338 GO:0043231 ! has target start location intracellular membrane-bounded organelle +intersection_of: RO:0002339 GO:0099523 ! has target end location presynaptic cytosol +intersection_of: RO:0002342 GO:0031090 ! results in transport across organelle membrane +intersection_of: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) +relationship: BFO:0000066 GO:0098793 ! occurs in presynapse +relationship: RO:0002338 GO:0043231 ! has target start location intracellular membrane-bounded organelle +relationship: RO:0002339 GO:0099523 ! has target end location presynaptic cytosol +relationship: RO:0002342 GO:0031090 ! results in transport across organelle membrane +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) [Term] id: GO:0099586 @@ -114300,15 +113767,15 @@ subset: goslim_synapse is_a: GO:0051209 ! release of sequestered calcium ion into cytosol is_a: GO:0051649 ! establishment of localization in cell intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29108 ! calcium(2+) -intersection_of: has_target_end_location GO:0099524 ! postsynaptic cytosol -intersection_of: has_target_start_location GO:0043231 ! intracellular membrane-bounded organelle -intersection_of: results_in_transport_across GO:0031090 ! organelle membrane -relationship: has_primary_input CHEBI:29108 ! calcium(2+) -relationship: has_target_end_location GO:0099524 ! postsynaptic cytosol -relationship: has_target_start_location GO:0043231 ! intracellular membrane-bounded organelle -relationship: occurs_in GO:0098794 ! postsynapse -relationship: results_in_transport_across GO:0031090 ! organelle membrane +intersection_of: RO:0002338 GO:0043231 ! has target start location intracellular membrane-bounded organelle +intersection_of: RO:0002339 GO:0099524 ! has target end location postsynaptic cytosol +intersection_of: RO:0002342 GO:0031090 ! results in transport across organelle membrane +intersection_of: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) +relationship: BFO:0000066 GO:0098794 ! occurs in postsynapse +relationship: RO:0002338 GO:0043231 ! has target start location intracellular membrane-bounded organelle +relationship: RO:0002339 GO:0099524 ! has target end location postsynaptic cytosol +relationship: RO:0002342 GO:0031090 ! results in transport across organelle membrane +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) [Term] id: GO:0099587 @@ -114319,26 +113786,26 @@ synonym: "inorganic ion import into cell" EXACT [] is_a: GO:0098660 ! inorganic ion transmembrane transport is_a: GO:0098739 ! import across plasma membrane intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:36914 ! inorganic ion -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005576 ! extracellular region -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:36914 ! inorganic ion -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005576 ! extracellular region -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:36914 ! has primary input inorganic ion +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:36914 ! has primary input inorganic ion [Term] id: GO:0099601 name: regulation of neurotransmitter receptor activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of neurotransmitter receptor activity. Modulation may be via an effect on ligand affinity, or effector function such as ion selectivity or pore opening/closing in ionotropic receptors." [GOC:dos] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate subset: goslim_synapse is_a: GO:0010469 ! regulation of signaling receptor activity intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030594 ! neurotransmitter receptor activity -relationship: regulates GO:0030594 ! neurotransmitter receptor activity +intersection_of: RO:0002211 GO:0030594 ! regulates (processual) neurotransmitter receptor activity +relationship: RO:0002211 GO:0030594 ! regulates (processual) neurotransmitter receptor activity [Term] id: GO:0099612 @@ -114347,8 +113814,8 @@ namespace: biological_process def: "A process in which a protein is transported to or maintained in a location within an axon." [GOC:dos, PMID:26157139] is_a: GO:0008104 ! protein localization intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0030424 ! axon -relationship: has_target_end_location GO:0030424 ! axon +intersection_of: RO:0002339 GO:0030424 ! has target end location axon +relationship: RO:0002339 GO:0030424 ! has target end location axon [Term] id: GO:0099632 @@ -114357,10 +113824,10 @@ namespace: biological_process def: "A process in which protein is transported from one region of the plasma membrane to another." [GOC:dos] is_a: GO:0032594 ! protein transport within lipid bilayer intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input PR:000000001 ! protein -intersection_of: occurs_in GO:0005886 ! plasma membrane -relationship: has_primary_input PR:000000001 ! protein -relationship: occurs_in GO:0005886 ! plasma membrane +intersection_of: BFO:0000066 GO:0005886 ! occurs in plasma membrane +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: BFO:0000066 GO:0005886 ! occurs in plasma membrane +relationship: RO:0004009 PR:000000001 ! has primary input protein [Term] id: GO:0099637 @@ -114371,8 +113838,8 @@ subset: goslim_synapse is_a: GO:0015031 ! protein transport is_a: GO:0031503 ! protein-containing complex localization intersection_of: GO:0015031 ! protein transport -intersection_of: has_primary_input GO:0098878 ! neurotransmitter receptor complex -relationship: has_primary_input GO:0098878 ! neurotransmitter receptor complex +intersection_of: RO:0004009 GO:0098878 ! has primary input neurotransmitter receptor complex +relationship: RO:0004009 GO:0098878 ! has primary input neurotransmitter receptor complex [Term] id: GO:0099640 @@ -114384,12 +113851,12 @@ synonym: "axonal protein transport" NARROW [] is_a: GO:0008088 ! axo-dendritic transport is_a: GO:0098840 ! protein transport along microtubule intersection_of: GO:0046907 ! intracellular transport -intersection_of: has_primary_input PR:000000001 ! protein -intersection_of: occurs_in GO:0043005 ! neuron projection -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: has_primary_input PR:000000001 ! protein -relationship: occurs_in GO:0043005 ! neuron projection -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: BFO:0000066 GO:0043005 ! occurs in neuron projection +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: BFO:0000066 GO:0043005 ! occurs in neuron projection +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: RO:0004009 PR:000000001 ! has primary input protein [Term] id: GO:0099641 @@ -114402,14 +113869,14 @@ is_a: GO:0008089 ! anterograde axonal transport is_a: GO:0099640 ! axo-dendritic protein transport is_a: GO:1905383 ! protein localization to presynapse intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input PR:000000001 ! protein -intersection_of: has_target_end_location GO:0098793 ! presynapse -intersection_of: occurs_in GO:1904115 ! axon cytoplasm -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: has_primary_input PR:000000001 ! protein -relationship: has_target_end_location GO:0098793 ! presynapse -relationship: occurs_in GO:1904115 ! axon cytoplasm -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: BFO:0000066 GO:1904115 ! occurs in axon cytoplasm +intersection_of: RO:0002339 GO:0098793 ! has target end location presynapse +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: BFO:0000066 GO:1904115 ! occurs in axon cytoplasm +relationship: RO:0002339 GO:0098793 ! has target end location presynapse +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: RO:0004009 PR:000000001 ! has primary input protein [Term] id: GO:0099642 @@ -114421,14 +113888,14 @@ synonym: "retrograde axon cargo transport" BROAD [] is_a: GO:0008090 ! retrograde axonal transport is_a: GO:0099640 ! axo-dendritic protein transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input PR:000000001 ! protein -intersection_of: has_target_start_location GO:0098793 ! presynapse -intersection_of: occurs_in GO:1904115 ! axon cytoplasm -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: has_primary_input PR:000000001 ! protein -relationship: has_target_start_location GO:0098793 ! presynapse -relationship: occurs_in GO:1904115 ! axon cytoplasm -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: BFO:0000066 GO:1904115 ! occurs in axon cytoplasm +intersection_of: RO:0002338 GO:0098793 ! has target start location presynapse +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: BFO:0000066 GO:1904115 ! occurs in axon cytoplasm +relationship: RO:0002338 GO:0098793 ! has target start location presynapse +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: RO:0004009 PR:000000001 ! has primary input protein [Term] id: GO:0099643 @@ -114438,11 +113905,11 @@ def: "Any signal release from a synapse." [GOC:dos] subset: goslim_synapse is_a: GO:0023061 ! signal release intersection_of: GO:0023061 ! signal release -intersection_of: occurs_in GO:0045202 ! synapse +intersection_of: BFO:0000066 GO:0045202 ! occurs in synapse +relationship: BFO:0000066 GO:0045202 ! occurs in synapse relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: occurs_in GO:0045202 ! synapse -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa relationship: part_of GO:0099536 ! synaptic signaling +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa [Term] id: GO:0099738 @@ -114465,8 +113932,8 @@ def: "Any action potential process that regulates skeletal muscle contraction." is_a: BFO:0000015 ! process is_a: GO:0001508 ! action potential intersection_of: GO:0001508 ! action potential -intersection_of: regulates GO:0003009 ! skeletal muscle contraction -relationship: regulates GO:0003009 ! skeletal muscle contraction +intersection_of: RO:0002211 GO:0003009 ! regulates (processual) skeletal muscle contraction +relationship: RO:0002211 GO:0003009 ! regulates (processual) skeletal muscle contraction created_by: cjm creation_date: 2015-04-02T04:13:19Z @@ -114477,8 +113944,8 @@ namespace: biological_process def: "The multiplication or reproduction of blood vessel endothelial cells, resulting in the expansion of a cell population." [GOC:BHF, GOC:BHF_telomere, GOC:nc, PMID:23201774] is_a: GO:0001935 ! endothelial cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000071 ! blood vessel endothelial cell -relationship: acts_on_population_of CL:0000071 ! blood vessel endothelial cell +intersection_of: RO:0012003 CL:0000071 ! acts on population of blood vessel endothelial cell +relationship: RO:0012003 CL:0000071 ! acts on population of blood vessel endothelial cell [Term] id: GO:0101024 @@ -114492,8 +113959,8 @@ is_a: GO:1903047 ! mitotic cell cycle process intersection_of: GO:0071763 ! nuclear membrane organization intersection_of: part_of GO:0140014 ! mitotic nuclear division relationship: in_taxon NCBITaxon:2759 {all_only="true"} ! Eukaryota -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota relationship: part_of GO:0140014 ! mitotic nuclear division +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19949" xsd:anyURI [Term] @@ -114503,9 +113970,9 @@ namespace: biological_process def: "The process in which a nuclear membrane is synthesized, aggregates, and bonds together." [GOC:vw] is_a: GO:0044091 ! membrane biogenesis intersection_of: GO:0044085 ! cellular component biogenesis -intersection_of: has_primary_output GO:0031965 ! nuclear membrane -relationship: has_primary_output GO:0031965 ! nuclear membrane +intersection_of: RO:0004008 GO:0031965 ! has primary output nuclear membrane relationship: part_of GO:0071763 ! nuclear membrane organization +relationship: RO:0004008 GO:0031965 ! has primary output nuclear membrane [Term] id: GO:0104004 @@ -114524,8 +113991,8 @@ def: "Any process that modulates the frequency, rate or extent of the inflammato is_a: GO:0050727 ! regulation of inflammatory response is_a: GO:1903034 ! regulation of response to wounding intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0090594 ! inflammatory response to wounding -relationship: regulates GO:0090594 ! inflammatory response to wounding +intersection_of: RO:0002211 GO:0090594 ! regulates (processual) inflammatory response to wounding +relationship: RO:0002211 GO:0090594 ! regulates (processual) inflammatory response to wounding created_by: hjd creation_date: 2017-04-28T20:03:14Z @@ -114538,8 +114005,8 @@ is_a: GO:0050728 ! negative regulation of inflammatory response is_a: GO:0106014 ! regulation of inflammatory response to wounding is_a: GO:1903035 ! negative regulation of response to wounding intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0090594 ! inflammatory response to wounding -relationship: negatively_regulates GO:0090594 ! inflammatory response to wounding +intersection_of: RO:0002212 GO:0090594 ! negatively regulates inflammatory response to wounding +relationship: RO:0002212 GO:0090594 ! negatively regulates inflammatory response to wounding created_by: hjd creation_date: 2017-04-28T20:09:46Z @@ -114552,8 +114019,8 @@ is_a: GO:0050729 ! positive regulation of inflammatory response is_a: GO:0106014 ! regulation of inflammatory response to wounding is_a: GO:1903036 ! positive regulation of response to wounding intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0090594 ! inflammatory response to wounding -relationship: positively_regulates GO:0090594 ! inflammatory response to wounding +intersection_of: RO:0002213 GO:0090594 ! positively regulates inflammatory response to wounding +relationship: RO:0002213 GO:0090594 ! positively regulates inflammatory response to wounding created_by: hjd creation_date: 2017-04-28T20:16:31Z @@ -114564,8 +114031,8 @@ namespace: biological_process def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a prolongation or process extending from a neuron, e.g. an axon, or a dendrite." [GOC:aruk, GOC:bc, PMID:11585923] is_a: GO:0120036 ! plasma membrane bounded cell projection organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0043005 ! neuron projection -relationship: results_in_organization_of GO:0043005 ! neuron projection +intersection_of: RO:0002592 GO:0043005 ! results in organization of neuron projection +relationship: RO:0002592 GO:0043005 ! results in organization of neuron projection created_by: hjd creation_date: 2017-06-23T18:30:18Z @@ -114577,8 +114044,8 @@ def: "Any process that modulates the frequency, rate or extent of vesicle fusion is_a: GO:0031338 ! regulation of vesicle fusion is_a: GO:1903358 ! regulation of Golgi organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048280 ! vesicle fusion with Golgi apparatus -relationship: regulates GO:0048280 ! vesicle fusion with Golgi apparatus +intersection_of: RO:0002211 GO:0048280 ! regulates (processual) vesicle fusion with Golgi apparatus +relationship: RO:0002211 GO:0048280 ! regulates (processual) vesicle fusion with Golgi apparatus created_by: hjd creation_date: 2019-06-27T15:12:22Z @@ -114590,8 +114057,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0031339 ! negative regulation of vesicle fusion is_a: GO:0106214 ! regulation of vesicle fusion with Golgi apparatus intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048280 ! vesicle fusion with Golgi apparatus -relationship: negatively_regulates GO:0048280 ! vesicle fusion with Golgi apparatus +intersection_of: RO:0002212 GO:0048280 ! negatively regulates vesicle fusion with Golgi apparatus +relationship: RO:0002212 GO:0048280 ! negatively regulates vesicle fusion with Golgi apparatus created_by: hjd creation_date: 2019-06-27T15:17:17Z @@ -114603,8 +114070,8 @@ def: "Any process that activates or increases the frequency, rate or extent of v is_a: GO:0031340 ! positive regulation of vesicle fusion is_a: GO:0106214 ! regulation of vesicle fusion with Golgi apparatus intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048280 ! vesicle fusion with Golgi apparatus -relationship: positively_regulates GO:0048280 ! vesicle fusion with Golgi apparatus +intersection_of: RO:0002213 GO:0048280 ! positively regulates vesicle fusion with Golgi apparatus +relationship: RO:0002213 GO:0048280 ! positively regulates vesicle fusion with Golgi apparatus created_by: hjd creation_date: 2019-06-27T15:20:59Z @@ -114615,8 +114082,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the assembly, disassembly or arrangement of constituent parts of the basement membrane." [GOC:ha, PMID:27404358] is_a: GO:1903053 ! regulation of extracellular matrix organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0071711 ! basement membrane organization -relationship: regulates GO:0071711 ! basement membrane organization +intersection_of: RO:0002211 GO:0071711 ! regulates (processual) basement membrane organization +relationship: RO:0002211 GO:0071711 ! regulates (processual) basement membrane organization created_by: kmv [Term] @@ -114626,8 +114093,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and myosin or paramyosin." [GOC:lf, PMID:22790195] is_a: GO:0032956 ! regulation of actin cytoskeleton organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0031032 ! actomyosin structure organization -relationship: regulates GO:0031032 ! actomyosin structure organization +intersection_of: RO:0002211 GO:0031032 ! regulates (processual) actomyosin structure organization +relationship: RO:0002211 GO:0031032 ! regulates (processual) actomyosin structure organization created_by: kmv creation_date: 2017-06-20T19:28:58Z @@ -114638,8 +114105,8 @@ namespace: biological_process def: "The multiplication or reproduction of cardiac muscle myoblasts, resulting in the expansion of a cardiac muscle myoblast cell population. A cardiac myoblast is a precursor cell that has been committed to a cardiac muscle cell fate but retains the ability to divide and proliferate throughout life." [GOC:BHF, GOC:BHF_miRNA, GOC:rph, PMID:26512644] is_a: GO:0051450 ! myoblast proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000513 ! cardiac muscle myoblast -relationship: acts_on_population_of CL:0000513 ! cardiac muscle myoblast +intersection_of: RO:0012003 CL:0000513 ! acts on population of cardiac muscle myoblast +relationship: RO:0012003 CL:0000513 ! acts on population of cardiac muscle myoblast created_by: kmv creation_date: 2017-06-29T14:35:24Z @@ -114650,8 +114117,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cardiac muscle myoblast proliferation." [GOC:BHF, GOC:BHF_miRNA, GOC:rph, PMID:26512644] is_a: GO:2000291 ! regulation of myoblast proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0110021 ! cardiac muscle myoblast proliferation -relationship: regulates GO:0110021 ! cardiac muscle myoblast proliferation +intersection_of: RO:0002211 GO:0110021 ! regulates (processual) cardiac muscle myoblast proliferation +relationship: RO:0002211 GO:0110021 ! regulates (processual) cardiac muscle myoblast proliferation created_by: kmv creation_date: 2017-06-29T15:11:47Z @@ -114663,8 +114130,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0110022 ! regulation of cardiac muscle myoblast proliferation is_a: GO:2000818 ! negative regulation of myoblast proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0110021 ! cardiac muscle myoblast proliferation -relationship: negatively_regulates GO:0110021 ! cardiac muscle myoblast proliferation +intersection_of: RO:0002212 GO:0110021 ! negatively regulates cardiac muscle myoblast proliferation +relationship: RO:0002212 GO:0110021 ! negatively regulates cardiac muscle myoblast proliferation created_by: kmv creation_date: 2017-06-29T15:18:30Z @@ -114676,8 +114143,8 @@ def: "Any process that activates or increases the frequency, rate or extent of c is_a: GO:0110022 ! regulation of cardiac muscle myoblast proliferation is_a: GO:2000288 ! positive regulation of myoblast proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0110021 ! cardiac muscle myoblast proliferation -relationship: positively_regulates GO:0110021 ! cardiac muscle myoblast proliferation +intersection_of: RO:0002213 GO:0110021 ! positively regulates cardiac muscle myoblast proliferation +relationship: RO:0002213 GO:0110021 ! positively regulates cardiac muscle myoblast proliferation created_by: kmv creation_date: 2017-06-29T15:24:16Z @@ -114688,8 +114155,8 @@ namespace: biological_process def: "The process in which the anatomical structures of the nematode pharynx are generated and organized." [GOC:rz, PMID:20805556] is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0015232 ! nematode pharynx -relationship: results_in_morphogenesis_of UBERON:0015232 ! nematode pharynx +intersection_of: RO:0002298 UBERON:0015232 ! results in morphogenesis of nematode pharynx +relationship: RO:0002298 UBERON:0015232 ! results in morphogenesis of nematode pharynx property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/18285" xsd:anyURI created_by: kmv creation_date: 2017-07-24T20:51:28Z @@ -114701,8 +114168,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of nematode pharynx morphogenesis, the process in which the anatomical structure of the pharynx is generated and organized." [GOC:rz, PMID:20805556] is_a: GO:2000027 ! regulation of animal organ morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0110040 ! nematode pharynx morphogenesis -relationship: regulates GO:0110040 ! nematode pharynx morphogenesis +intersection_of: RO:0002211 GO:0110040 ! regulates (processual) nematode pharynx morphogenesis +relationship: RO:0002211 GO:0110040 ! regulates (processual) nematode pharynx morphogenesis property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/18285" xsd:anyURI created_by: kmv creation_date: 2017-07-24T21:00:20Z @@ -114715,8 +114182,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0110041 ! regulation of nematode pharynx morphogenesis is_a: GO:0110111 ! negative regulation of animal organ morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0110040 ! nematode pharynx morphogenesis -relationship: negatively_regulates GO:0110040 ! nematode pharynx morphogenesis +intersection_of: RO:0002212 GO:0110040 ! negatively regulates nematode pharynx morphogenesis +relationship: RO:0002212 GO:0110040 ! negatively regulates nematode pharynx morphogenesis property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/18285" xsd:anyURI created_by: kmv creation_date: 2017-07-24T21:05:08Z @@ -114729,8 +114196,8 @@ def: "Any process that activates or increases the frequency, rate or extent of n is_a: GO:0110041 ! regulation of nematode pharynx morphogenesis is_a: GO:0110110 ! positive regulation of animal organ morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0110040 ! nematode pharynx morphogenesis -relationship: positively_regulates GO:0110040 ! nematode pharynx morphogenesis +intersection_of: RO:0002213 GO:0110040 ! positively regulates nematode pharynx morphogenesis +relationship: RO:0002213 GO:0110040 ! positively regulates nematode pharynx morphogenesis property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/18285" xsd:anyURI created_by: kmv creation_date: 2017-07-24T21:09:48Z @@ -114743,9 +114210,9 @@ def: "Any process that modulates the frequency, rate or extent of actin filament is_a: GO:0032956 ! regulation of actin cytoskeleton organization is_a: GO:1902903 ! regulation of supramolecular fiber organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007015 ! actin filament organization -relationship: regulates GO:0007015 ! actin filament organization -relationship: regulates GO:0030036 ! actin cytoskeleton organization +intersection_of: RO:0002211 GO:0007015 ! regulates (processual) actin filament organization +relationship: RO:0002211 GO:0007015 ! regulates (processual) actin filament organization +relationship: RO:0002211 GO:0030036 ! regulates (processual) actin cytoskeleton organization created_by: kmv creation_date: 2017-09-20T19:52:57Z @@ -114756,8 +114223,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of blood vessel endothelial cell differentiation." [GOC:BHF, GOC:BHF_miRNA, GOC:rph, PMID:23072816] is_a: GO:0045601 ! regulation of endothelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060837 ! blood vessel endothelial cell differentiation -relationship: regulates GO:0060837 ! blood vessel endothelial cell differentiation +intersection_of: RO:0002211 GO:0060837 ! regulates (processual) blood vessel endothelial cell differentiation +relationship: RO:0002211 GO:0060837 ! regulates (processual) blood vessel endothelial cell differentiation created_by: kmv creation_date: 2017-10-23T14:32:09Z @@ -114769,8 +114236,8 @@ def: "Any process that activates or increases the frequency, rate or extent of b is_a: GO:0045603 ! positive regulation of endothelial cell differentiation is_a: GO:0110057 ! regulation of blood vessel endothelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060837 ! blood vessel endothelial cell differentiation -relationship: positively_regulates GO:0060837 ! blood vessel endothelial cell differentiation +intersection_of: RO:0002213 GO:0060837 ! positively regulates blood vessel endothelial cell differentiation +relationship: RO:0002213 GO:0060837 ! positively regulates blood vessel endothelial cell differentiation created_by: kmv creation_date: 2017-10-23T14:38:19Z @@ -114782,8 +114249,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0045602 ! negative regulation of endothelial cell differentiation is_a: GO:0110057 ! regulation of blood vessel endothelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060837 ! blood vessel endothelial cell differentiation -relationship: negatively_regulates GO:0060837 ! blood vessel endothelial cell differentiation +intersection_of: RO:0002212 GO:0060837 ! negatively regulates blood vessel endothelial cell differentiation +relationship: RO:0002212 GO:0060837 ! negatively regulates blood vessel endothelial cell differentiation created_by: kmv creation_date: 2017-10-23T14:47:29Z @@ -114796,8 +114263,8 @@ synonym: "endosomal trafficking" RELATED [] is_a: GO:0010496 ! intercellular transport is_a: GO:0016192 ! vesicle-mediated transport intersection_of: GO:0010496 ! intercellular transport -intersection_of: process_has_causal_agent GO:1903561 ! extracellular vesicle -relationship: process_has_causal_agent GO:1903561 ! extracellular vesicle +intersection_of: RO:0002608 GO:1903561 ! process has causal agent extracellular vesicle +relationship: RO:0002608 GO:1903561 ! process has causal agent extracellular vesicle created_by: kmv creation_date: 2018-01-29T14:46:52Z @@ -114808,9 +114275,9 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of placenta blood vessel development." [GOC:BHF, GOC:BHF_miRNA, GOC:rph, PMID:27748453] is_a: GO:1901342 ! regulation of vasculature development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060674 ! placenta blood vessel development -relationship: regulates GO:0001944 ! vasculature development -relationship: regulates GO:0060674 ! placenta blood vessel development +intersection_of: RO:0002211 GO:0060674 ! regulates (processual) placenta blood vessel development +relationship: RO:0002211 GO:0001944 ! regulates (processual) vasculature development +relationship: RO:0002211 GO:0060674 ! regulates (processual) placenta blood vessel development created_by: kmv creation_date: 2018-02-01T14:49:12Z @@ -114822,8 +114289,8 @@ def: "Any process that activates or increases the frequency, rate or extent of p is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0110079 ! regulation of placenta blood vessel development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060674 ! placenta blood vessel development -relationship: positively_regulates GO:0060674 ! placenta blood vessel development +intersection_of: RO:0002213 GO:0060674 ! positively regulates placenta blood vessel development +relationship: RO:0002213 GO:0060674 ! positively regulates placenta blood vessel development created_by: kmv creation_date: 2018-02-01T14:55:30Z @@ -114835,8 +114302,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0110079 ! regulation of placenta blood vessel development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060674 ! placenta blood vessel development -relationship: negatively_regulates GO:0060674 ! placenta blood vessel development +intersection_of: RO:0002212 GO:0060674 ! negatively regulates placenta blood vessel development +relationship: RO:0002212 GO:0060674 ! negatively regulates placenta blood vessel development created_by: kmv creation_date: 2018-02-01T15:01:11Z @@ -114847,8 +114314,8 @@ namespace: biological_process def: "Any apoptotic process that occurs in a hippocampal neuron." [GOC:sl, PMID:18940801] is_a: GO:0051402 ! neuron apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0002608 ! hippocampal neuron -relationship: occurs_in CL:0002608 ! hippocampal neuron +intersection_of: BFO:0000066 CL:0002608 ! occurs in hippocampal neuron +relationship: BFO:0000066 CL:0002608 ! occurs in hippocampal neuron created_by: kmv creation_date: 2018-02-13T21:06:23Z @@ -114859,8 +114326,8 @@ namespace: biological_process def: "Any process that modulates the occurrence or rate of cell death by apoptotic process in hippocampal neurons." [GOC:sl, PMID:18940801] is_a: GO:0043523 ! regulation of neuron apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0110088 ! hippocampal neuron apoptotic process -relationship: regulates GO:0110088 ! hippocampal neuron apoptotic process +intersection_of: RO:0002211 GO:0110088 ! regulates (processual) hippocampal neuron apoptotic process +relationship: RO:0002211 GO:0110088 ! regulates (processual) hippocampal neuron apoptotic process created_by: kmv creation_date: 2018-02-13T21:18:29Z @@ -114872,8 +114339,8 @@ def: "Any process that activates or increases the frequency, rate or extent of c is_a: GO:0043525 ! positive regulation of neuron apoptotic process is_a: GO:0110089 ! regulation of hippocampal neuron apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0110088 ! hippocampal neuron apoptotic process -relationship: positively_regulates GO:0110088 ! hippocampal neuron apoptotic process +intersection_of: RO:0002213 GO:0110088 ! positively regulates hippocampal neuron apoptotic process +relationship: RO:0002213 GO:0110088 ! positively regulates hippocampal neuron apoptotic process created_by: kmv creation_date: 2018-02-13T21:22:18Z @@ -114885,8 +114352,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0043524 ! negative regulation of neuron apoptotic process is_a: GO:0110089 ! regulation of hippocampal neuron apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0110088 ! hippocampal neuron apoptotic process -relationship: negatively_regulates GO:0110088 ! hippocampal neuron apoptotic process +intersection_of: RO:0002212 GO:0110088 ! negatively regulates hippocampal neuron apoptotic process +relationship: RO:0002212 GO:0110088 ! negatively regulates hippocampal neuron apoptotic process created_by: kmv creation_date: 2018-02-13T21:25:01Z @@ -114897,9 +114364,9 @@ namespace: biological_process def: "Any process carried out at the cellular level that reduces or removes the toxicity of an aldehyde. These may include transport of aldehydes away from sensitive areas and to compartments or complexes whose purpose is sequestration of the toxic substance." [GOC:vw, PMID:25656103] is_a: GO:1990748 ! cellular detoxification intersection_of: GO:1990748 ! cellular detoxification -intersection_of: has_primary_input CHEBI:17478 ! aldehyde -relationship: has_primary_input CHEBI:17478 ! aldehyde +intersection_of: RO:0004009 CHEBI:17478 ! has primary input aldehyde relationship: part_of GO:0110096 ! cellular response to aldehyde +relationship: RO:0004009 CHEBI:17478 ! has primary input aldehyde created_by: kmv creation_date: 2018-02-16T21:19:20Z @@ -114910,8 +114377,8 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aldehyde stimulus." [GOC:vw, PMID:25656103] is_a: GO:1901701 ! cellular response to oxygen-containing compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:17478 ! aldehyde -relationship: has_primary_input CHEBI:17478 ! aldehyde +intersection_of: RO:0004009 CHEBI:17478 ! has primary input aldehyde +relationship: RO:0004009 CHEBI:17478 ! has primary input aldehyde created_by: kmv creation_date: 2018-02-16T21:29:18Z @@ -114924,9 +114391,9 @@ is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:2000027 ! regulation of animal organ morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009887 ! animal organ morphogenesis -relationship: positively_regulates GO:0009887 ! animal organ morphogenesis -relationship: positively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002213 GO:0009887 ! positively regulates animal organ morphogenesis +relationship: RO:0002213 GO:0009887 ! positively regulates animal organ morphogenesis +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process created_by: kmv creation_date: 2018-07-05T14:10:14Z @@ -114939,9 +114406,9 @@ is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:2000027 ! regulation of animal organ morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009887 ! animal organ morphogenesis -relationship: negatively_regulates GO:0009887 ! animal organ morphogenesis -relationship: negatively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002212 GO:0009887 ! negatively regulates animal organ morphogenesis +relationship: RO:0002212 GO:0009887 ! negatively regulates animal organ morphogenesis +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process created_by: kmv creation_date: 2018-07-05T14:25:21Z @@ -114950,13 +114417,13 @@ id: GO:0110112 name: regulation of lipid transporter activity namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of lipid transporter activity." [GOC:BHF, GOC:BHF_miRNA, GOC:rph, PMID:27365390] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate is_a: GO:0032368 ! regulation of lipid transport is_a: GO:0032409 ! regulation of transporter activity intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0005319 ! lipid transporter activity -relationship: regulates GO:0005319 ! lipid transporter activity -relationship: regulates GO:0006869 ! lipid transport +intersection_of: RO:0002211 GO:0005319 ! regulates (processual) lipid transporter activity +relationship: RO:0002211 GO:0005319 ! regulates (processual) lipid transporter activity +relationship: RO:0002211 GO:0006869 ! regulates (processual) lipid transport created_by: kmv creation_date: 2018-07-06T18:53:55Z @@ -114965,14 +114432,14 @@ id: GO:0110113 name: positive regulation of lipid transporter activity namespace: biological_process def: "Any process that increases the frequency, rate, or extent of lipid transporter activity." [GOC:BHF, GOC:BHF_miRNA, GOC:rph, PMID:27365390] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate is_a: GO:0032370 ! positive regulation of lipid transport is_a: GO:0032411 ! positive regulation of transporter activity is_a: GO:0110112 ! regulation of lipid transporter activity intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0005319 ! lipid transporter activity -relationship: positively_regulates GO:0005319 ! lipid transporter activity -relationship: positively_regulates GO:0006869 ! lipid transport +intersection_of: RO:0002213 GO:0005319 ! positively regulates lipid transporter activity +relationship: RO:0002213 GO:0005319 ! positively regulates lipid transporter activity +relationship: RO:0002213 GO:0006869 ! positively regulates lipid transport created_by: kmv creation_date: 2018-07-06T19:14:13Z @@ -114981,14 +114448,14 @@ id: GO:0110114 name: negative regulation of lipid transporter activity namespace: biological_process def: "Any process that decreases the frequency, rate, or extent of lipid transporter activity." [GOC:BHF, GOC:BHF_miRNA, GOC:rph, PMID:27365390] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate is_a: GO:0032369 ! negative regulation of lipid transport is_a: GO:0032410 ! negative regulation of transporter activity is_a: GO:0110112 ! regulation of lipid transporter activity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0005319 ! lipid transporter activity -relationship: negatively_regulates GO:0005319 ! lipid transporter activity -relationship: negatively_regulates GO:0006869 ! lipid transport +intersection_of: RO:0002212 GO:0005319 ! negatively regulates lipid transporter activity +relationship: RO:0002212 GO:0005319 ! negatively regulates lipid transporter activity +relationship: RO:0002212 GO:0006869 ! negatively regulates lipid transport created_by: kmv creation_date: 2018-07-06T19:21:44Z @@ -114999,8 +114466,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of compound eye photoreceptor cell differentiation." [GOC:ha, PMID:16377567] is_a: GO:0046532 ! regulation of photoreceptor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001751 ! compound eye photoreceptor cell differentiation -relationship: regulates GO:0001751 ! compound eye photoreceptor cell differentiation +intersection_of: RO:0002211 GO:0001751 ! regulates (processual) compound eye photoreceptor cell differentiation +relationship: RO:0002211 GO:0001751 ! regulates (processual) compound eye photoreceptor cell differentiation created_by: kmv creation_date: 2018-07-16T18:08:49Z @@ -115012,8 +114479,8 @@ def: "Any process that activates or increases the frequency, rate or extent of c is_a: GO:0046534 ! positive regulation of photoreceptor cell differentiation is_a: GO:0110116 ! regulation of compound eye photoreceptor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001751 ! compound eye photoreceptor cell differentiation -relationship: positively_regulates GO:0001751 ! compound eye photoreceptor cell differentiation +intersection_of: RO:0002213 GO:0001751 ! positively regulates compound eye photoreceptor cell differentiation +relationship: RO:0002213 GO:0001751 ! positively regulates compound eye photoreceptor cell differentiation created_by: kmv creation_date: 2018-07-16T18:13:28Z @@ -115025,8 +114492,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0046533 ! negative regulation of photoreceptor cell differentiation is_a: GO:0110116 ! regulation of compound eye photoreceptor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001751 ! compound eye photoreceptor cell differentiation -relationship: negatively_regulates GO:0001751 ! compound eye photoreceptor cell differentiation +intersection_of: RO:0002212 GO:0001751 ! negatively regulates compound eye photoreceptor cell differentiation +relationship: RO:0002212 GO:0001751 ! negatively regulates compound eye photoreceptor cell differentiation created_by: kmv creation_date: 2018-07-16T18:15:52Z @@ -115037,8 +114504,8 @@ namespace: biological_process def: "The orderly movement of a myotube cell from one site to another, often during the development of a multicellular organism. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate, and fuse." [GOC:ha, PMID:29122742] is_a: GO:0014812 ! muscle cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0002372 ! myotube -relationship: results_in_movement_of CL:0002372 ! myotube +intersection_of: RO:0002565 CL:0002372 ! results in movement of myotube +relationship: RO:0002565 CL:0002372 ! results in movement of myotube created_by: kmv creation_date: 2018-08-22T20:58:09Z @@ -115049,8 +114516,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of myotube cell migration." [GOC:ha, PMID:29122742] is_a: GO:0030334 ! regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0110122 ! myotube cell migration -relationship: regulates GO:0110122 ! myotube cell migration +intersection_of: RO:0002211 GO:0110122 ! regulates (processual) myotube cell migration +relationship: RO:0002211 GO:0110122 ! regulates (processual) myotube cell migration created_by: kmv creation_date: 2018-08-22T21:06:53Z @@ -115062,8 +114529,8 @@ def: "Any process that activates, maintains or increases the frequency, rate or is_a: GO:0030335 ! positive regulation of cell migration is_a: GO:0110123 ! regulation of myotube cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0110122 ! myotube cell migration -relationship: positively_regulates GO:0110122 ! myotube cell migration +intersection_of: RO:0002213 GO:0110122 ! positively regulates myotube cell migration +relationship: RO:0002213 GO:0110122 ! positively regulates myotube cell migration created_by: kmv creation_date: 2018-08-22T21:09:38Z @@ -115075,8 +114542,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0030336 ! negative regulation of cell migration is_a: GO:0110123 ! regulation of myotube cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0110122 ! myotube cell migration -relationship: negatively_regulates GO:0110122 ! myotube cell migration +intersection_of: RO:0002212 GO:0110122 ! negatively regulates myotube cell migration +relationship: RO:0002212 GO:0110122 ! negatively regulates myotube cell migration created_by: kmv creation_date: 2018-08-22T21:12:47Z @@ -115087,8 +114554,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of imaginal disc-derived leg joint morphogenesis, the process in which the anatomical structure of the imaginal disc-derived leg joint is generated and organized." [GOC:ha, PMID:25329825] is_a: GO:0022603 ! regulation of anatomical structure morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007480 ! imaginal disc-derived leg morphogenesis -relationship: regulates GO:0007480 ! imaginal disc-derived leg morphogenesis +intersection_of: RO:0002211 GO:0007480 ! regulates (processual) imaginal disc-derived leg morphogenesis +relationship: RO:0002211 GO:0007480 ! regulates (processual) imaginal disc-derived leg morphogenesis created_by: kmv creation_date: 2019-02-12T15:31:25Z @@ -115100,8 +114567,8 @@ def: "Any process that activates or increases the frequency, rate or extent of i is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0110137 ! regulation of imaginal disc-derived leg joint morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007480 ! imaginal disc-derived leg morphogenesis -relationship: positively_regulates GO:0007480 ! imaginal disc-derived leg morphogenesis +intersection_of: RO:0002213 GO:0007480 ! positively regulates imaginal disc-derived leg morphogenesis +relationship: RO:0002213 GO:0007480 ! positively regulates imaginal disc-derived leg morphogenesis created_by: kmv creation_date: 2019-02-12T15:37:05Z @@ -115113,23 +114580,25 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0110137 ! regulation of imaginal disc-derived leg joint morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007480 ! imaginal disc-derived leg morphogenesis -relationship: negatively_regulates GO:0007480 ! imaginal disc-derived leg morphogenesis +intersection_of: RO:0002212 GO:0007480 ! negatively regulates imaginal disc-derived leg morphogenesis +relationship: RO:0002212 GO:0007480 ! negatively regulates imaginal disc-derived leg morphogenesis created_by: kmv creation_date: 2019-02-12T15:40:09Z [Term] id: GO:0110165 -name: cellular anatomical entity +name: cellular anatomical structure namespace: cellular_component -def: "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex." [GOC:kmv] +def: "A part of a cellular organism consisting of a material entity with granularity above the level of a protein complex but below that of an anatomical system. Note that cellular organisms exclude viruses." [GOC:kmv] subset: gocheck_do_not_annotate subset: goslim_pir +synonym: "cellular anatomical entity" EXACT [] is_a: CARO:0000000 ! anatomical entity is_a: GO:0005575 ! cellular_component is_a: UBERON:0000061 ! anatomical structure property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24200" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28978" xsd:anyURI created_by: kmv creation_date: 2019-08-12T18:01:37Z @@ -115140,8 +114609,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of glutamatergic neuron differentiation." [PMID:24030726] is_a: GO:0045664 ! regulation of neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1905962 ! glutamatergic neuron differentiation -relationship: regulates GO:1905962 ! glutamatergic neuron differentiation +intersection_of: RO:0002211 GO:1905962 ! regulates (processual) glutamatergic neuron differentiation +relationship: RO:0002211 GO:1905962 ! regulates (processual) glutamatergic neuron differentiation property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/13107" xsd:anyURI created_by: krc creation_date: 2017-03-01T16:10:27Z @@ -115154,8 +114623,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0045665 ! negative regulation of neuron differentiation is_a: GO:0120006 ! regulation of glutamatergic neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1905962 ! glutamatergic neuron differentiation -relationship: negatively_regulates GO:1905962 ! glutamatergic neuron differentiation +intersection_of: RO:0002212 GO:1905962 ! negatively regulates glutamatergic neuron differentiation +relationship: RO:0002212 GO:1905962 ! negatively regulates glutamatergic neuron differentiation property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/13107" xsd:anyURI created_by: krc creation_date: 2017-03-01T16:25:50Z @@ -115168,8 +114637,8 @@ def: "Any process that activates or increases the frequency, rate or extent of g is_a: GO:0045666 ! positive regulation of neuron differentiation is_a: GO:0120006 ! regulation of glutamatergic neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1905962 ! glutamatergic neuron differentiation -relationship: positively_regulates GO:1905962 ! glutamatergic neuron differentiation +intersection_of: RO:0002213 GO:1905962 ! positively regulates glutamatergic neuron differentiation +relationship: RO:0002213 GO:1905962 ! positively regulates glutamatergic neuron differentiation property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/13107" xsd:anyURI created_by: krc creation_date: 2017-03-01T16:35:45Z @@ -115181,8 +114650,8 @@ namespace: molecular_function def: "Binding to somatostatin, a polypeptide hormone involved in regulating pancreatic alpha and pancreatic beta cells and controlling growth hormone secretion as well as many other functions. Somatostatin is produced by several cell types including pancreatic delta cells. There are several different mature forms of somatostatin." [GOC:cvs, PMID:20472043] is_a: GO:0017046 ! peptide hormone binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:64628 ! somatostatin -relationship: has_primary_input CHEBI:64628 ! somatostatin +intersection_of: RO:0004009 CHEBI:64628 ! has primary input somatostatin +relationship: RO:0004009 CHEBI:64628 ! has primary input somatostatin property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/13143" xsd:anyURI created_by: krc creation_date: 2017-03-17T14:54:21Z @@ -115211,14 +114680,14 @@ synonym: "proton export from cell" BROAD [] is_a: GO:0140115 ! export across plasma membrane is_a: GO:1902600 ! proton transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:15378 ! hydron -intersection_of: has_target_end_location GO:0005576 ! extracellular region -intersection_of: has_target_start_location GO:0005829 ! cytosol -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:15378 ! hydron -relationship: has_target_end_location GO:0005576 ! extracellular region -relationship: has_target_start_location GO:0005829 ! cytosol -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005829 ! has target start location cytosol +intersection_of: RO:0002339 GO:0005576 ! has target end location extracellular region +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:15378 ! has primary input hydron +relationship: RO:0002338 GO:0005829 ! has target start location cytosol +relationship: RO:0002339 GO:0005576 ! has target end location extracellular region +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:15378 ! has primary input hydron property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/13271" xsd:anyURI created_by: krc creation_date: 2017-03-31T17:39:03Z @@ -115232,8 +114701,8 @@ synonym: "eupodium" NARROW [GOC:krc, GOC:rjd, PMID:10328951, PMID:9096956] is_a: GO:0030031 ! cell projection assembly is_a: GO:0120036 ! plasma membrane bounded cell projection organization intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0120025 ! plasma membrane bounded cell projection -relationship: results_in_assembly_of GO:0120025 ! plasma membrane bounded cell projection +intersection_of: RO:0002588 GO:0120025 ! results in assembly of plasma membrane bounded cell projection +relationship: RO:0002588 GO:0120025 ! results in assembly of plasma membrane bounded cell projection property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/13298" xsd:anyURI created_by: krc creation_date: 2017-04-24T23:56:08Z @@ -115246,8 +114715,8 @@ def: "Any process that modulates the rate, frequency, or extent of plasma membra is_a: GO:0060491 ! regulation of cell projection assembly is_a: GO:0120035 ! regulation of plasma membrane bounded cell projection organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0120031 ! plasma membrane bounded cell projection assembly -relationship: regulates GO:0120031 ! plasma membrane bounded cell projection assembly +intersection_of: RO:0002211 GO:0120031 ! regulates (processual) plasma membrane bounded cell projection assembly +relationship: RO:0002211 GO:0120031 ! regulates (processual) plasma membrane bounded cell projection assembly property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/13298" xsd:anyURI created_by: krc creation_date: 2017-04-26T04:27:04Z @@ -115260,8 +114729,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0031345 ! negative regulation of cell projection organization is_a: GO:0120032 ! regulation of plasma membrane bounded cell projection assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0120031 ! plasma membrane bounded cell projection assembly -relationship: negatively_regulates GO:0120031 ! plasma membrane bounded cell projection assembly +intersection_of: RO:0002212 GO:0120031 ! negatively regulates plasma membrane bounded cell projection assembly +relationship: RO:0002212 GO:0120031 ! negatively regulates plasma membrane bounded cell projection assembly property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/13298" xsd:anyURI created_by: krc creation_date: 2017-04-26T04:34:31Z @@ -115275,9 +114744,9 @@ is_a: GO:0031346 ! positive regulation of cell projection organization is_a: GO:0044089 ! positive regulation of cellular component biogenesis is_a: GO:0120032 ! regulation of plasma membrane bounded cell projection assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0120031 ! plasma membrane bounded cell projection assembly -relationship: positively_regulates GO:0044085 ! cellular component biogenesis -relationship: positively_regulates GO:0120031 ! plasma membrane bounded cell projection assembly +intersection_of: RO:0002213 GO:0120031 ! positively regulates plasma membrane bounded cell projection assembly +relationship: RO:0002213 GO:0044085 ! positively regulates cellular component biogenesis +relationship: RO:0002213 GO:0120031 ! positively regulates plasma membrane bounded cell projection assembly property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/13298" xsd:anyURI created_by: krc creation_date: 2017-04-26T04:34:45Z @@ -115289,8 +114758,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of plasma membrane bounded cell projections." [GOC:krc] is_a: GO:0031344 ! regulation of cell projection organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0120036 ! plasma membrane bounded cell projection organization -relationship: regulates GO:0120036 ! plasma membrane bounded cell projection organization +intersection_of: RO:0002211 GO:0120036 ! regulates (processual) plasma membrane bounded cell projection organization +relationship: RO:0002211 GO:0120036 ! regulates (processual) plasma membrane bounded cell projection organization property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/13298" xsd:anyURI created_by: krc creation_date: 2017-04-26T16:02:06Z @@ -115302,8 +114771,8 @@ namespace: biological_process def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a plasma membrane bounded prolongation or process extending from a cell, e.g. a cilium or axon." [GOC:krc] is_a: GO:0030030 ! cell projection organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0120025 ! plasma membrane bounded cell projection -relationship: results_in_organization_of GO:0120025 ! plasma membrane bounded cell projection +intersection_of: RO:0002592 GO:0120025 ! results in organization of plasma membrane bounded cell projection +relationship: RO:0002592 GO:0120025 ! results in organization of plasma membrane bounded cell projection property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/13298" xsd:anyURI created_by: krc creation_date: 2017-04-26T16:07:02Z @@ -115315,8 +114784,8 @@ namespace: biological_process def: "The process in which the anatomical structures of a plasma membrane bounded cell projection are generated and organized." [GOC:krc] is_a: GO:0048858 ! cell projection morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of GO:0120025 ! plasma membrane bounded cell projection -relationship: results_in_morphogenesis_of GO:0120025 ! plasma membrane bounded cell projection +intersection_of: RO:0002298 GO:0120025 ! results in morphogenesis of plasma membrane bounded cell projection +relationship: RO:0002298 GO:0120025 ! results in morphogenesis of plasma membrane bounded cell projection property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/13298" xsd:anyURI created_by: krc creation_date: 2017-04-28T23:39:37Z @@ -115341,8 +114810,8 @@ namespace: biological_process def: "The formation of mature glucagon by proteolysis of the precursor proglucagon." [PMID:28719828] is_a: GO:0016486 ! peptide hormone processing intersection_of: GO:0016485 ! protein processing -intersection_of: has_primary_input_or_output CHEBI:5391 ! glucagon -relationship: has_primary_input_or_output CHEBI:5391 ! glucagon +intersection_of: RO:0004007 CHEBI:5391 ! has primary input or output glucagon +relationship: RO:0004007 CHEBI:5391 ! has primary input or output glucagon property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/14505" xsd:anyURI created_by: krc creation_date: 2017-11-08T19:31:42Z @@ -115363,8 +114832,8 @@ is_a: GO:0009896 ! positive regulation of catabolic process is_a: GO:0010710 ! regulation of collagen catabolic process is_a: GO:0010714 ! positive regulation of collagen metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030574 ! collagen catabolic process -relationship: positively_regulates GO:0030574 ! collagen catabolic process +intersection_of: RO:0002213 GO:0030574 ! positively regulates collagen catabolic process +relationship: RO:0002213 GO:0030574 ! positively regulates collagen catabolic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/15720" xsd:anyURI created_by: krc creation_date: 2018-05-11T16:31:42Z @@ -115376,8 +114845,8 @@ namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of any steroid hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone." [GOC:krc, GOC:nln] is_a: GO:0006694 ! steroid biosynthetic process intersection_of: GO:0006694 ! steroid biosynthetic process -intersection_of: has_primary_output CHEBI:26764 ! steroid hormone -relationship: has_primary_output CHEBI:26764 ! steroid hormone +intersection_of: RO:0004008 CHEBI:26764 ! has primary output steroid hormone +relationship: RO:0004008 CHEBI:26764 ! has primary output steroid hormone property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16000" xsd:anyURI created_by: krc creation_date: 2019-05-20T22:34:00Z @@ -115391,8 +114860,8 @@ synonym: "negative regulation of protein localisation to chromatin" EXACT [GOC:k is_a: GO:1903828 ! negative regulation of protein localization is_a: GO:1905634 ! regulation of protein localization to chromatin intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0071168 ! protein localization to chromatin -relationship: negatively_regulates GO:0071168 ! protein localization to chromatin +intersection_of: RO:0002212 GO:0071168 ! negatively regulates protein localization to chromatin +relationship: RO:0002212 GO:0071168 ! negatively regulates protein localization to chromatin property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16012" xsd:anyURI created_by: krc creation_date: 2018-07-14T00:19:32Z @@ -115406,8 +114875,8 @@ synonym: "positive regulation of protein localisation to chromatin" EXACT [GOC:k is_a: GO:1903829 ! positive regulation of protein localization is_a: GO:1905634 ! regulation of protein localization to chromatin intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0071168 ! protein localization to chromatin -relationship: positively_regulates GO:0071168 ! protein localization to chromatin +intersection_of: RO:0002213 GO:0071168 ! positively regulates protein localization to chromatin +relationship: RO:0002213 GO:0071168 ! positively regulates protein localization to chromatin property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16012" xsd:anyURI created_by: krc creation_date: 2018-07-14T00:21:28Z @@ -115419,8 +114888,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the controlled release of bile acid from a cell or a tissue." [GOC:BHF, GOC:BHF_miRNA, GOC:rph, PMID:22767443] is_a: GO:0051046 ! regulation of secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032782 ! bile acid secretion -relationship: regulates GO:0032782 ! bile acid secretion +intersection_of: RO:0002211 GO:0032782 ! regulates (processual) bile acid secretion +relationship: RO:0002211 GO:0032782 ! regulates (processual) bile acid secretion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16040" xsd:anyURI created_by: krc creation_date: 2018-07-16T22:28:58Z @@ -115433,8 +114902,8 @@ def: "Any process that activates or increases the frequency, rate or extent of t is_a: GO:0051047 ! positive regulation of secretion is_a: GO:0120188 ! regulation of bile acid secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032782 ! bile acid secretion -relationship: positively_regulates GO:0032782 ! bile acid secretion +intersection_of: RO:0002213 GO:0032782 ! positively regulates bile acid secretion +relationship: RO:0002213 GO:0032782 ! positively regulates bile acid secretion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16040" xsd:anyURI created_by: krc creation_date: 2018-07-16T22:36:17Z @@ -115447,8 +114916,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0051048 ! negative regulation of secretion is_a: GO:0120188 ! regulation of bile acid secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032782 ! bile acid secretion -relationship: negatively_regulates GO:0032782 ! bile acid secretion +intersection_of: RO:0002212 GO:0032782 ! negatively regulates bile acid secretion +relationship: RO:0002212 GO:0032782 ! negatively regulates bile acid secretion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16040" xsd:anyURI created_by: krc creation_date: 2018-07-16T22:38:34Z @@ -115463,8 +114932,8 @@ synonym: "occluding junction assembly" EXACT [GOC:rl] is_a: GO:0007043 ! cell-cell junction assembly is_a: GO:0120193 ! tight junction organization intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0070160 ! tight junction -relationship: results_in_assembly_of GO:0070160 ! tight junction +intersection_of: RO:0002588 GO:0070160 ! results in assembly of tight junction +relationship: RO:0002588 GO:0070160 ! results in assembly of tight junction property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16187" xsd:anyURI created_by: krc creation_date: 2018-08-14T22:48:05Z @@ -115478,8 +114947,8 @@ synonym: "occluding cell junction organization" EXACT [GOC:rl] synonym: "occluding junction organization" EXACT [] is_a: GO:0045216 ! cell-cell junction organization intersection_of: GO:0016043 ! cellular component organization -intersection_of: results_in_organization_of GO:0070160 ! tight junction -relationship: results_in_organization_of GO:0070160 ! tight junction +intersection_of: RO:0002592 GO:0070160 ! results in organization of tight junction +relationship: RO:0002592 GO:0070160 ! results in organization of tight junction property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16187" xsd:anyURI created_by: krc creation_date: 2018-08-14T23:05:40Z @@ -115519,8 +114988,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of blastocyst development." [GOC:krc, PMID:29593216] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001824 ! blastocyst development -relationship: regulates GO:0001824 ! blastocyst development +intersection_of: RO:0002211 GO:0001824 ! regulates (processual) blastocyst development +relationship: RO:0002211 GO:0001824 ! regulates (processual) blastocyst development property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/18871" xsd:anyURI created_by: krc creation_date: 2020-02-17T19:59:20Z @@ -115533,9 +115002,9 @@ def: "The process in which the larynx is generated and organized. The larynx is synonym: "laryngeal morphogenesis" EXACT [GOC:krc, PMID:28177282] is_a: GO:0009887 ! animal organ morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001737 ! larynx +intersection_of: RO:0002298 UBERON:0001737 ! results in morphogenesis of larynx relationship: part_of GO:0120224 ! larynx development -relationship: results_in_morphogenesis_of UBERON:0001737 ! larynx +relationship: RO:0002298 UBERON:0001737 ! results in morphogenesis of larynx property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/18924" xsd:anyURI created_by: krc creation_date: 2020-02-22T01:42:04Z @@ -115547,9 +115016,9 @@ namespace: biological_process def: "The biological process whose specific outcome is the progression of a larynx from an initial condition to its mature state. This process begins with the formation of the larynx and ends with the mature structure. A larynx is a continuation of the pharynx that is involved in breathing, sound production, and protecting the trachea against food aspiration." [GOC:krc, PMID:28177282] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001737 ! larynx +intersection_of: RO:0002296 UBERON:0001737 ! results in development of larynx relationship: part_of GO:0060541 ! respiratory system development -relationship: results_in_development_of UBERON:0001737 ! larynx +relationship: RO:0002296 UBERON:0001737 ! results in development of larynx property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/18924" xsd:anyURI created_by: krc creation_date: 2020-02-24T17:13:10Z @@ -115562,8 +115031,8 @@ def: "A process in which a protein is transported to, or maintained in, a locati synonym: "protein localization to nonmotile primary cilium" RELATED [] is_a: GO:0061512 ! protein localization to cilium intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0031514 ! motile cilium -relationship: has_target_end_location GO:0031514 ! motile cilium +intersection_of: RO:0002339 GO:0031514 ! has target end location motile cilium +relationship: RO:0002339 GO:0031514 ! has target end location motile cilium property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19588" xsd:anyURI created_by: krc creation_date: 2020-06-05T23:43:04Z @@ -115580,8 +115049,8 @@ synonym: "hydrocarbon synthesis" EXACT [GOC:krc] is_a: GO:0009058 ! biosynthetic process is_a: GO:0120252 ! hydrocarbon metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:24632 ! hydrocarbon -relationship: has_primary_output CHEBI:24632 ! hydrocarbon +intersection_of: RO:0004008 CHEBI:24632 ! has primary output hydrocarbon +relationship: RO:0004008 CHEBI:24632 ! has primary output hydrocarbon property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19842" xsd:anyURI created_by: krc creation_date: 2020-09-02T20:35:53Z @@ -115594,8 +115063,8 @@ def: "The chemical reactions and pathways involving a hydrocarbon, a compound co synonym: "hydrocarbon metabolism" EXACT [GOC:krc] is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:24632 ! hydrocarbon -relationship: has_primary_input_or_output CHEBI:24632 ! hydrocarbon +intersection_of: RO:0004007 CHEBI:24632 ! has primary input or output hydrocarbon +relationship: RO:0004007 CHEBI:24632 ! has primary input or output hydrocarbon property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19842" xsd:anyURI created_by: krc creation_date: 2020-09-02T20:47:28Z @@ -115611,8 +115080,8 @@ synonym: "hydrocarbon degradation" EXACT [GOC:krc] is_a: GO:0009056 ! catabolic process is_a: GO:0120252 ! hydrocarbon metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:24632 ! hydrocarbon -relationship: has_primary_input CHEBI:24632 ! hydrocarbon +intersection_of: RO:0004009 CHEBI:24632 ! has primary input hydrocarbon +relationship: RO:0004009 CHEBI:24632 ! has primary input hydrocarbon property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19842" xsd:anyURI created_by: krc creation_date: 2020-09-02T20:58:57Z @@ -115626,8 +115095,8 @@ synonym: "alkene substituted compound metabolic process" EXACT [] synonym: "alkene substituted compound metabolism" EXACT [] is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:78840 ! olefinic compound -relationship: has_primary_input_or_output CHEBI:78840 ! olefinic compound +intersection_of: RO:0004007 CHEBI:78840 ! has primary input or output olefinic compound +relationship: RO:0004007 CHEBI:78840 ! has primary input or output olefinic compound property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19936" xsd:anyURI created_by: krc creation_date: 2020-09-02T23:13:44Z @@ -115645,8 +115114,8 @@ synonym: "alkene substituted compound synthesis" EXACT [GOC:krc] is_a: GO:0009058 ! biosynthetic process is_a: GO:0120254 ! olefinic compound metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:78840 ! olefinic compound -relationship: has_primary_output CHEBI:78840 ! olefinic compound +intersection_of: RO:0004008 CHEBI:78840 ! has primary output olefinic compound +relationship: RO:0004008 CHEBI:78840 ! has primary output olefinic compound property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19936" xsd:anyURI created_by: krc creation_date: 2020-09-02T23:30:20Z @@ -115663,8 +115132,8 @@ synonym: "alkene substituted compound degradation" EXACT [GOC:krc] is_a: GO:0009056 ! catabolic process is_a: GO:0120254 ! olefinic compound metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:78840 ! olefinic compound -relationship: has_primary_input CHEBI:78840 ! olefinic compound +intersection_of: RO:0004009 CHEBI:78840 ! has primary input olefinic compound +relationship: RO:0004009 CHEBI:78840 ! has primary input olefinic compound property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19936" xsd:anyURI created_by: krc creation_date: 2020-09-02T23:30:41Z @@ -115678,8 +115147,8 @@ synonym: "cerebrum blood circulation" EXACT [] synonym: "telencephelon blood circulation" EXACT [] is_a: GO:0008015 ! blood circulation intersection_of: GO:0008015 ! blood circulation -intersection_of: occurs_in UBERON:0001893 ! telencephalon -relationship: occurs_in UBERON:0001893 ! telencephalon +intersection_of: BFO:0000066 UBERON:0001893 ! occurs in telencephalon +relationship: BFO:0000066 UBERON:0001893 ! occurs in telencephalon property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20107" xsd:anyURI created_by: krc creation_date: 2020-10-20T19:13:51Z @@ -115693,8 +115162,8 @@ synonym: "regulation of cerebrum blood circulation" EXACT [] synonym: "regulation of telencephalon blood circulation" EXACT [] is_a: GO:1903522 ! regulation of blood circulation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0120275 ! cerebral blood circulation -relationship: regulates GO:0120275 ! cerebral blood circulation +intersection_of: RO:0002211 GO:0120275 ! regulates (processual) cerebral blood circulation +relationship: RO:0002211 GO:0120275 ! regulates (processual) cerebral blood circulation property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20107" xsd:anyURI created_by: krc creation_date: 2020-10-21T06:52:22Z @@ -115713,8 +115182,8 @@ synonym: "upregulation of cerebral blood circulation" EXACT [] is_a: GO:0120276 ! regulation of cerebral blood circulation is_a: GO:1903524 ! positive regulation of blood circulation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0120275 ! cerebral blood circulation -relationship: positively_regulates GO:0120275 ! cerebral blood circulation +intersection_of: RO:0002213 GO:0120275 ! positively regulates cerebral blood circulation +relationship: RO:0002213 GO:0120275 ! positively regulates cerebral blood circulation property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20107" xsd:anyURI created_by: krc creation_date: 2020-10-21T06:55:42Z @@ -115733,8 +115202,8 @@ synonym: "negative regulation of telencephalon blood circulation" EXACT [] is_a: GO:0120276 ! regulation of cerebral blood circulation is_a: GO:1903523 ! negative regulation of blood circulation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0120275 ! cerebral blood circulation -relationship: negatively_regulates GO:0120275 ! cerebral blood circulation +intersection_of: RO:0002212 GO:0120275 ! negatively regulates cerebral blood circulation +relationship: RO:0002212 GO:0120275 ! negatively regulates cerebral blood circulation property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20107" xsd:anyURI created_by: krc creation_date: 2020-10-21T07:02:05Z @@ -115746,8 +115215,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the deposition or modulates the distribution of coloring matter in an organism." [GOC:krc] is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0043473 ! pigmentation -relationship: regulates GO:0043473 ! pigmentation +intersection_of: RO:0002211 GO:0043473 ! regulates (processual) pigmentation +relationship: RO:0002211 GO:0043473 ! regulates (processual) pigmentation property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20524" xsd:anyURI created_by: krc creation_date: 2021-02-09T19:37:35Z @@ -115760,8 +115229,8 @@ def: "The assembly and organization of the sperm flagellum, the microtubule-base is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0044458 ! motile cilium assembly intersection_of: GO:0044458 ! motile cilium assembly -intersection_of: occurs_in CL:0000019 ! sperm -relationship: occurs_in CL:0000019 ! sperm +intersection_of: BFO:0000066 CL:0000019 ! occurs in sperm +relationship: BFO:0000066 CL:0000019 ! occurs in sperm relationship: part_of GO:0007286 ! spermatid development relationship: part_of GO:0030317 ! flagellated sperm motility property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/21361" xsd:anyURI @@ -115775,9 +115244,9 @@ namespace: biological_process def: "The developmental process pertaining to the initial formation of an endothelial tube." [GOC:sl, PMID:23239824] is_a: GO:0072175 ! epithelial tube formation intersection_of: GO:0035148 ! tube formation -intersection_of: results_in_formation_of_anatomical_entity UBERON:0003915 ! endothelial tube +intersection_of: RO:0002297 UBERON:0003915 ! results in formation of anatomical entity endothelial tube relationship: part_of GO:0061154 ! endothelial tube morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0003915 ! endothelial tube +relationship: RO:0002297 UBERON:0003915 ! results in formation of anatomical entity endothelial tube property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22302" xsd:anyURI created_by: krc creation_date: 2022-05-25T16:17:59Z @@ -115859,8 +115328,8 @@ def: "Any process that controls lipoprotein transport." [GOC:BHF, GOC:BHF_miRNA, is_a: GO:0051049 ! regulation of transport is_a: GO:0070201 ! regulation of establishment of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042953 ! lipoprotein transport -relationship: regulates GO:0042953 ! lipoprotein transport +intersection_of: RO:0002211 GO:0042953 ! regulates (processual) lipoprotein transport +relationship: RO:0002211 GO:0042953 ! regulates (processual) lipoprotein transport created_by: pg creation_date: 2017-07-21T15:35:47Z @@ -115873,8 +115342,8 @@ is_a: GO:0051051 ! negative regulation of transport is_a: GO:0140075 ! regulation of lipoprotein transport is_a: GO:1904950 ! negative regulation of establishment of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042953 ! lipoprotein transport -relationship: negatively_regulates GO:0042953 ! lipoprotein transport +intersection_of: RO:0002212 GO:0042953 ! negatively regulates lipoprotein transport +relationship: RO:0002212 GO:0042953 ! negatively regulates lipoprotein transport created_by: pg creation_date: 2017-07-21T15:39:50Z @@ -115887,8 +115356,8 @@ is_a: GO:0051050 ! positive regulation of transport is_a: GO:0140075 ! regulation of lipoprotein transport is_a: GO:1904951 ! positive regulation of establishment of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042953 ! lipoprotein transport -relationship: positively_regulates GO:0042953 ! lipoprotein transport +intersection_of: RO:0002213 GO:0042953 ! positively regulates lipoprotein transport +relationship: RO:0002213 GO:0042953 ! positively regulates lipoprotein transport created_by: pg creation_date: 2017-07-21T15:41:54Z @@ -115901,8 +115370,8 @@ subset: goslim_generic subset: goslim_prokaryote is_a: GO:0003824 ! catalytic activity intersection_of: GO:0003824 ! catalytic activity -intersection_of: has_primary_input PR:000000001 ! protein -relationship: has_primary_input PR:000000001 ! protein +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: RO:0004009 PR:000000001 ! has primary input protein property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/14225" xsd:anyURI created_by: pg creation_date: 2017-09-14T10:32:59Z @@ -115916,8 +115385,8 @@ subset: goslim_generic subset: goslim_prokaryote is_a: GO:0140640 ! catalytic activity, acting on a nucleic acid intersection_of: GO:0003824 ! catalytic activity -intersection_of: has_primary_input CHEBI:16991 ! deoxyribonucleic acid -relationship: has_primary_input CHEBI:16991 ! deoxyribonucleic acid +intersection_of: RO:0004009 CHEBI:16991 ! has primary input deoxyribonucleic acid +relationship: RO:0004009 CHEBI:16991 ! has primary input deoxyribonucleic acid property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/14225" xsd:anyURI created_by: pg creation_date: 2017-09-14T12:03:51Z @@ -115931,8 +115400,8 @@ subset: goslim_generic subset: goslim_prokaryote is_a: GO:0140640 ! catalytic activity, acting on a nucleic acid intersection_of: GO:0003824 ! catalytic activity -intersection_of: has_primary_input CHEBI:33697 ! ribonucleic acid -relationship: has_primary_input CHEBI:33697 ! ribonucleic acid +intersection_of: RO:0004009 CHEBI:33697 ! has primary input ribonucleic acid +relationship: RO:0004009 CHEBI:33697 ! has primary input ribonucleic acid property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/14225" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/21612" xsd:anyURI created_by: pg @@ -115945,31 +115414,12 @@ namespace: molecular_function def: "Catalysis of a biochemical reaction at physiological temperatures in which one of the substrates is a glycoprotein." [GOC:molecular_function_refactoring, GOC:pdt] is_a: GO:0003824 ! catalytic activity intersection_of: GO:0003824 ! catalytic activity -intersection_of: has_primary_input CHEBI:17089 ! glycoprotein -relationship: has_primary_input CHEBI:17089 ! glycoprotein +intersection_of: RO:0004009 CHEBI:17089 ! has primary input glycoprotein +relationship: RO:0004009 CHEBI:17089 ! has primary input glycoprotein property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/14225" xsd:anyURI created_by: pg creation_date: 2017-09-15T19:27:54Z -[Term] -id: GO:0140110 -name: transcription regulator activity -namespace: molecular_function -def: "A molecular function that controls the rate, timing and/or magnitude of gene transcription. The function of transcriptional regulators is to modulate gene expression at the transcription step so that they are expressed in the right cell at the right time and in the right amount throughout the life of the cell and the organism. Genes are transcriptional units, and include bacterial operons." [GOC:pg, GOC:txnOH-2018, Wikipedia:Transcription_factor] -subset: gocheck_do_not_annotate -subset: goslim_euk_cellular_processes_ribbon -subset: goslim_flybase_ribbon -subset: goslim_generic -subset: goslim_plant -subset: goslim_plant_ribbon -subset: goslim_prokaryote -subset: goslim_prokaryote_ribbon -is_a: GO:0003674 ! molecular_function -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/13588" xsd:anyURI -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23609" xsd:anyURI -created_by: pg -creation_date: 2017-10-18T07:05:44Z - [Term] id: GO:0140112 name: extracellular vesicle biogenesis @@ -115990,12 +115440,12 @@ synonym: "efflux" BROAD [] is_a: GO:0055085 ! transmembrane transport is_a: GO:0140352 ! export from cell intersection_of: GO:0006810 ! transport -intersection_of: has_target_end_location GO:0005576 ! extracellular region -intersection_of: has_target_start_location GO:0005829 ! cytosol -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_target_end_location GO:0005576 ! extracellular region -relationship: has_target_start_location GO:0005829 ! cytosol -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005829 ! has target start location cytosol +intersection_of: RO:0002339 GO:0005576 ! has target end location extracellular region +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0002338 GO:0005829 ! has target start location cytosol +relationship: RO:0002339 GO:0005576 ! has target end location extracellular region +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane created_by: pg creation_date: 2017-10-24T14:38:16Z @@ -116008,8 +115458,8 @@ is_a: GO:0002690 ! positive regulation of leukocyte chemotaxis is_a: GO:1901623 ! regulation of lymphocyte chemotaxis is_a: GO:2000403 ! positive regulation of lymphocyte migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048247 ! lymphocyte chemotaxis -relationship: positively_regulates GO:0048247 ! lymphocyte chemotaxis +intersection_of: RO:0002213 GO:0048247 ! positively regulates lymphocyte chemotaxis +relationship: RO:0002213 GO:0048247 ! positively regulates lymphocyte chemotaxis created_by: pg creation_date: 2017-11-02T10:26:40Z @@ -116021,14 +115471,14 @@ def: "The directed movement of calcium cations into the vacuole across the vacuo is_a: GO:0034486 ! vacuolar transmembrane transport is_a: GO:0070588 ! calcium ion transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29108 ! calcium(2+) -intersection_of: has_target_end_location GO:0005775 ! vacuolar lumen -intersection_of: has_target_start_location GO:0005829 ! cytosol -intersection_of: results_in_transport_across GO:0005774 ! vacuolar membrane -relationship: has_primary_input CHEBI:29108 ! calcium(2+) -relationship: has_target_end_location GO:0005775 ! vacuolar lumen -relationship: has_target_start_location GO:0005829 ! cytosol -relationship: results_in_transport_across GO:0005774 ! vacuolar membrane +intersection_of: RO:0002338 GO:0005829 ! has target start location cytosol +intersection_of: RO:0002339 GO:0005775 ! has target end location vacuolar lumen +intersection_of: RO:0002342 GO:0005774 ! results in transport across vacuolar membrane +intersection_of: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) +relationship: RO:0002338 GO:0005829 ! has target start location cytosol +relationship: RO:0002339 GO:0005775 ! has target end location vacuolar lumen +relationship: RO:0002342 GO:0005774 ! results in transport across vacuolar membrane +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) created_by: pg creation_date: 2017-12-13T15:15:29Z @@ -116040,14 +115490,14 @@ def: "The directed movement of an ammonium ion from outside of a cell, across th is_a: GO:0072488 ! ammonium transmembrane transport is_a: GO:0098659 ! inorganic cation import across plasma membrane intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:28938 ! ammonium -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005576 ! extracellular region -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:28938 ! ammonium -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005576 ! extracellular region -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:28938 ! has primary input ammonium +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:28938 ! has primary input ammonium created_by: pg creation_date: 2018-01-26T12:39:56Z @@ -116061,14 +115511,14 @@ is_a: GO:0097120 ! receptor localization to synapse is_a: GO:0099637 ! neurotransmitter receptor transport is_a: GO:0099641 ! anterograde axonal protein transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input GO:0098878 ! neurotransmitter receptor complex -intersection_of: has_target_end_location GO:0098793 ! presynapse -intersection_of: occurs_in GO:1904115 ! axon cytoplasm -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: has_primary_input GO:0098878 ! neurotransmitter receptor complex -relationship: has_target_end_location GO:0098793 ! presynapse -relationship: occurs_in GO:1904115 ! axon cytoplasm -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: BFO:0000066 GO:1904115 ! occurs in axon cytoplasm +intersection_of: RO:0002339 GO:0098793 ! has target end location presynapse +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +intersection_of: RO:0004009 GO:0098878 ! has primary input neurotransmitter receptor complex +relationship: BFO:0000066 GO:1904115 ! occurs in axon cytoplasm +relationship: RO:0002339 GO:0098793 ! has target end location presynapse +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: RO:0004009 GO:0098878 ! has primary input neurotransmitter receptor complex created_by: pg creation_date: 2018-07-09T09:41:37Z @@ -116081,8 +115531,8 @@ comment: Note that this term was created for the SynGO project, and will be obso subset: goslim_synapse is_a: GO:0140241 ! translation at synapse intersection_of: GO:0006412 ! translation -intersection_of: occurs_in GO:0098793 ! presynapse -relationship: occurs_in GO:0098793 ! presynapse +intersection_of: BFO:0000066 GO:0098793 ! occurs in presynapse +relationship: BFO:0000066 GO:0098793 ! occurs in presynapse property_value: term_tracker_item "https://github.com/geneontology/synapse/issues/216" xsd:anyURI created_by: pg creation_date: 2018-07-13T13:00:33Z @@ -116096,10 +115546,10 @@ comment: Note that this term was created for the SynGO project, and will be obso subset: goslim_synapse is_a: GO:0140236 ! translation at presynapse intersection_of: GO:0006412 ! translation -intersection_of: occurs_in GO:0098793 ! presynapse -intersection_of: regulates GO:0007268 ! chemical synaptic transmission -relationship: occurs_in GO:0098793 ! presynapse -relationship: regulates GO:0007268 ! chemical synaptic transmission +intersection_of: BFO:0000066 GO:0098793 ! occurs in presynapse +intersection_of: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission +relationship: BFO:0000066 GO:0098793 ! occurs in presynapse +relationship: RO:0002211 GO:0007268 ! regulates (processual) chemical synaptic transmission property_value: term_tracker_item "https://github.com/geneontology/synapse/issues/216" xsd:anyURI created_by: pg creation_date: 2018-07-13T13:07:23Z @@ -116115,8 +115565,8 @@ is_a: GO:0006897 ! endocytosis is_a: GO:0051649 ! establishment of localization in cell is_a: GO:0099003 ! vesicle-mediated transport in synapse intersection_of: GO:0006897 ! endocytosis -intersection_of: occurs_in GO:0098793 ! presynapse -relationship: occurs_in GO:0098793 ! presynapse +intersection_of: BFO:0000066 GO:0098793 ! occurs in presynapse +relationship: BFO:0000066 GO:0098793 ! occurs in presynapse property_value: term_tracker_item "https://github.com/geneontology/synapse/issues/230" xsd:anyURI created_by: pg creation_date: 2018-07-15T07:33:55Z @@ -116132,8 +115582,8 @@ is_a: GO:0006897 ! endocytosis is_a: GO:0051649 ! establishment of localization in cell is_a: GO:0099003 ! vesicle-mediated transport in synapse intersection_of: GO:0006897 ! endocytosis -intersection_of: occurs_in GO:0098794 ! postsynapse -relationship: occurs_in GO:0098794 ! postsynapse +intersection_of: BFO:0000066 GO:0098794 ! occurs in postsynapse +relationship: BFO:0000066 GO:0098794 ! occurs in postsynapse property_value: term_tracker_item "https://github.com/geneontology/synapse/issues/230" xsd:anyURI created_by: pg creation_date: 2018-07-15T07:38:27Z @@ -116147,10 +115597,10 @@ comment: Note that this term was created for the SynGO project, and will be obso subset: goslim_synapse is_a: GO:0006412 ! translation intersection_of: GO:0006412 ! translation -intersection_of: occurs_in GO:0045202 ! synapse +intersection_of: BFO:0000066 GO:0045202 ! occurs in synapse +relationship: BFO:0000066 GO:0045202 ! occurs in synapse relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: occurs_in GO:0045202 ! synapse -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa property_value: term_tracker_item "https://github.com/geneontology/synapse/issues/210" xsd:anyURI created_by: pg creation_date: 2018-07-15T09:23:12Z @@ -116164,8 +115614,8 @@ comment: Note that this term was created for the SynGO project, and will be obso subset: goslim_synapse is_a: GO:0140241 ! translation at synapse intersection_of: GO:0006412 ! translation -intersection_of: occurs_in GO:0098794 ! postsynapse -relationship: occurs_in GO:0098794 ! postsynapse +intersection_of: BFO:0000066 GO:0098794 ! occurs in postsynapse +relationship: BFO:0000066 GO:0098794 ! occurs in postsynapse property_value: term_tracker_item "https://github.com/geneontology/synapse/issues/210" xsd:anyURI created_by: pg creation_date: 2018-07-15T09:26:27Z @@ -116179,12 +115629,12 @@ comment: Note that this term was created for the SynGO project, and will be obso subset: goslim_synapse is_a: GO:0006417 ! regulation of translation intersection_of: GO:0065007 ! biological regulation -intersection_of: occurs_in GO:0045202 ! synapse -intersection_of: regulates GO:0006412 ! translation +intersection_of: BFO:0000066 GO:0045202 ! occurs in synapse +intersection_of: RO:0002211 GO:0006412 ! regulates (processual) translation +relationship: BFO:0000066 GO:0045202 ! occurs in synapse relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: occurs_in GO:0045202 ! synapse -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa -relationship: regulates GO:0006412 ! translation +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0002211 GO:0006412 ! regulates (processual) translation property_value: term_tracker_item "https://github.com/geneontology/synapse/issues/210" xsd:anyURI created_by: pg creation_date: 2018-07-15T09:38:26Z @@ -116198,10 +115648,10 @@ comment: Note that this term was created for the SynGO project, and will be obso subset: goslim_synapse is_a: GO:0140243 ! regulation of translation at synapse intersection_of: GO:0065007 ! biological regulation -intersection_of: occurs_in GO:0098793 ! presynapse -intersection_of: regulates GO:0006412 ! translation -relationship: occurs_in GO:0098793 ! presynapse -relationship: regulates GO:0006412 ! translation +intersection_of: BFO:0000066 GO:0098793 ! occurs in presynapse +intersection_of: RO:0002211 GO:0006412 ! regulates (processual) translation +relationship: BFO:0000066 GO:0098793 ! occurs in presynapse +relationship: RO:0002211 GO:0006412 ! regulates (processual) translation property_value: term_tracker_item "https://github.com/geneontology/synapse/issues/210" xsd:anyURI created_by: pg creation_date: 2018-07-15T09:38:33Z @@ -116215,10 +115665,10 @@ comment: Note that this term was created for the SynGO project, and will be obso subset: goslim_synapse is_a: GO:0140243 ! regulation of translation at synapse intersection_of: GO:0065007 ! biological regulation -intersection_of: occurs_in GO:0098794 ! postsynapse -intersection_of: regulates GO:0006412 ! translation -relationship: occurs_in GO:0098794 ! postsynapse -relationship: regulates GO:0006412 ! translation +intersection_of: BFO:0000066 GO:0098794 ! occurs in postsynapse +intersection_of: RO:0002211 GO:0006412 ! regulates (processual) translation +relationship: BFO:0000066 GO:0098794 ! occurs in postsynapse +relationship: RO:0002211 GO:0006412 ! regulates (processual) translation property_value: term_tracker_item "https://github.com/geneontology/synapse/issues/210" xsd:anyURI created_by: pg creation_date: 2018-07-15T09:38:54Z @@ -116232,12 +115682,12 @@ comment: Note that this term was created for the SynGO project, and will be obso subset: goslim_synapse is_a: GO:0009057 ! macromolecule catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:36080 ! protein -intersection_of: occurs_in GO:0045202 ! synapse -relationship: has_primary_input CHEBI:36080 ! protein +intersection_of: BFO:0000066 GO:0045202 ! occurs in synapse +intersection_of: RO:0004009 CHEBI:36080 ! has primary input protein +relationship: BFO:0000066 GO:0045202 ! occurs in synapse relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: occurs_in GO:0045202 ! synapse -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0004009 CHEBI:36080 ! has primary input protein property_value: term_tracker_item "https://github.com/geneontology/synapse/issues/210" xsd:anyURI created_by: pg creation_date: 2018-07-15T10:12:51Z @@ -116251,10 +115701,10 @@ comment: Note that this term was created for the SynGO project, and will be obso subset: goslim_synapse is_a: GO:0140246 ! protein catabolic process at synapse intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:36080 ! protein -intersection_of: occurs_in GO:0098793 ! presynapse -relationship: has_primary_input CHEBI:36080 ! protein -relationship: occurs_in GO:0098793 ! presynapse +intersection_of: BFO:0000066 GO:0098793 ! occurs in presynapse +intersection_of: RO:0004009 CHEBI:36080 ! has primary input protein +relationship: BFO:0000066 GO:0098793 ! occurs in presynapse +relationship: RO:0004009 CHEBI:36080 ! has primary input protein property_value: term_tracker_item "https://github.com/geneontology/synapse/issues/204" xsd:anyURI created_by: pg creation_date: 2018-07-15T10:23:49Z @@ -116268,10 +115718,10 @@ comment: Note that this term was created for the SynGO project, and will be obso subset: goslim_synapse is_a: GO:0140246 ! protein catabolic process at synapse intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:36080 ! protein -intersection_of: occurs_in GO:0098794 ! postsynapse -relationship: has_primary_input CHEBI:36080 ! protein -relationship: occurs_in GO:0098794 ! postsynapse +intersection_of: BFO:0000066 GO:0098794 ! occurs in postsynapse +intersection_of: RO:0004009 CHEBI:36080 ! has primary input protein +relationship: BFO:0000066 GO:0098794 ! occurs in postsynapse +relationship: RO:0004009 CHEBI:36080 ! has primary input protein property_value: term_tracker_item "https://github.com/geneontology/synapse/issues/204" xsd:anyURI created_by: pg creation_date: 2018-07-15T10:25:04Z @@ -116285,14 +115735,14 @@ comment: Note that this term was created for the SynGO project, and will be obso subset: goslim_synapse is_a: GO:0009894 ! regulation of catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: has_primary_input CHEBI:36080 ! protein -intersection_of: occurs_in GO:0045202 ! synapse -intersection_of: regulates GO:0009056 ! catabolic process -relationship: has_primary_input CHEBI:36080 ! protein +intersection_of: BFO:0000066 GO:0045202 ! occurs in synapse +intersection_of: RO:0002211 GO:0009056 ! regulates (processual) catabolic process +intersection_of: RO:0004009 CHEBI:36080 ! has primary input protein +relationship: BFO:0000066 GO:0045202 ! occurs in synapse relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: occurs_in GO:0045202 ! synapse -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa -relationship: regulates GO:0009056 ! catabolic process +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0002211 GO:0009056 ! regulates (processual) catabolic process +relationship: RO:0004009 CHEBI:36080 ! has primary input protein property_value: term_tracker_item "https://github.com/geneontology/synapse/issues/204" xsd:anyURI created_by: pg creation_date: 2018-07-15T10:34:56Z @@ -116306,12 +115756,12 @@ comment: Note that this term was created for the SynGO project, and will be obso subset: goslim_synapse is_a: GO:0140250 ! regulation protein catabolic process at synapse intersection_of: GO:0065007 ! biological regulation -intersection_of: has_primary_input CHEBI:36080 ! protein -intersection_of: occurs_in GO:0098793 ! presynapse -intersection_of: regulates GO:0009056 ! catabolic process -relationship: has_primary_input CHEBI:36080 ! protein -relationship: occurs_in GO:0098793 ! presynapse -relationship: regulates GO:0009056 ! catabolic process +intersection_of: BFO:0000066 GO:0098793 ! occurs in presynapse +intersection_of: RO:0002211 GO:0009056 ! regulates (processual) catabolic process +intersection_of: RO:0004009 CHEBI:36080 ! has primary input protein +relationship: BFO:0000066 GO:0098793 ! occurs in presynapse +relationship: RO:0002211 GO:0009056 ! regulates (processual) catabolic process +relationship: RO:0004009 CHEBI:36080 ! has primary input protein property_value: term_tracker_item "https://github.com/geneontology/synapse/issues/204" xsd:anyURI created_by: pg creation_date: 2018-07-15T10:35:39Z @@ -116325,12 +115775,12 @@ comment: Note that this term was created for the SynGO project, and will be obso subset: goslim_synapse is_a: GO:0140250 ! regulation protein catabolic process at synapse intersection_of: GO:0065007 ! biological regulation -intersection_of: has_primary_input CHEBI:36080 ! protein -intersection_of: occurs_in GO:0098794 ! postsynapse -intersection_of: regulates GO:0009056 ! catabolic process -relationship: has_primary_input CHEBI:36080 ! protein -relationship: occurs_in GO:0098794 ! postsynapse -relationship: regulates GO:0009056 ! catabolic process +intersection_of: BFO:0000066 GO:0098794 ! occurs in postsynapse +intersection_of: RO:0002211 GO:0009056 ! regulates (processual) catabolic process +intersection_of: RO:0004009 CHEBI:36080 ! has primary input protein +relationship: BFO:0000066 GO:0098794 ! occurs in postsynapse +relationship: RO:0002211 GO:0009056 ! regulates (processual) catabolic process +relationship: RO:0004009 CHEBI:36080 ! has primary input protein property_value: term_tracker_item "https://github.com/geneontology/synapse/issues/204" xsd:anyURI created_by: pg creation_date: 2018-07-15T10:35:56Z @@ -116356,14 +115806,14 @@ def: "The directed movement of hexose from outside of a cell, across the plasma is_a: GO:0008645 ! hexose transmembrane transport is_a: GO:0098704 ! carbohydrate import across plasma membrane intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:18133 ! hexose -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005576 ! extracellular region -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:18133 ! hexose -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005576 ! extracellular region -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:18133 ! has primary input hexose +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:18133 ! has primary input hexose created_by: pg creation_date: 2018-10-01T08:49:49Z @@ -116396,8 +115846,8 @@ xref: Reactome:R-HSA-9662747 "iRHOM2 transports ADAM17 from ER to the Golgi-netw xref: Reactome:R-HSA-9662818 "iRHOM2 transports ADAM17:Zn2+ from Golgi to the plasma membrane" is_a: GO:0005215 ! transporter activity intersection_of: GO:0005215 ! transporter activity -intersection_of: has_primary_input PR:000000001 ! protein -relationship: has_primary_input PR:000000001 ! protein +intersection_of: RO:0004009 PR:000000001 ! has primary input protein +relationship: RO:0004009 PR:000000001 ! has primary input protein property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/17073" xsd:anyURI created_by: pg creation_date: 2019-04-01T10:41:38Z @@ -116411,10 +115861,10 @@ synonym: "efflux" BROAD [] is_a: GO:0006810 ! transport is_a: GO:0009987 ! cellular process intersection_of: GO:0006810 ! transport -intersection_of: has_target_end_location GO:0005576 ! extracellular region -intersection_of: has_target_start_location GO:0005622 ! intracellular anatomical structure -relationship: has_target_end_location GO:0005576 ! extracellular region -relationship: has_target_start_location GO:0005622 ! intracellular anatomical structure +intersection_of: RO:0002338 GO:0005622 ! has target start location intracellular anatomical structure +intersection_of: RO:0002339 GO:0005576 ! has target end location extracellular region +relationship: RO:0002338 GO:0005622 ! has target start location intracellular anatomical structure +relationship: RO:0002339 GO:0005576 ! has target end location extracellular region created_by: pg creation_date: 2019-05-22T11:20:45Z @@ -116427,12 +115877,12 @@ synonym: "lipid efflux" BROAD [] is_a: GO:0006869 ! lipid transport is_a: GO:0140352 ! export from cell intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:18059 ! lipid -intersection_of: has_target_end_location GO:0005576 ! extracellular region -intersection_of: has_target_start_location GO:0005622 ! intracellular anatomical structure -relationship: has_primary_input CHEBI:18059 ! lipid -relationship: has_target_end_location GO:0005576 ! extracellular region -relationship: has_target_start_location GO:0005622 ! intracellular anatomical structure +intersection_of: RO:0002338 GO:0005622 ! has target start location intracellular anatomical structure +intersection_of: RO:0002339 GO:0005576 ! has target end location extracellular region +intersection_of: RO:0004009 CHEBI:18059 ! has primary input lipid +relationship: RO:0002338 GO:0005622 ! has target start location intracellular anatomical structure +relationship: RO:0002339 GO:0005576 ! has target end location extracellular region +relationship: RO:0004009 CHEBI:18059 ! has primary input lipid created_by: pg creation_date: 2019-05-22T11:33:07Z @@ -116444,12 +115894,12 @@ def: "The directed movement of a lipid from outside of a cell into a cell. This synonym: "lipid uptake" BROAD [] is_a: GO:0006869 ! lipid transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:18059 ! lipid -intersection_of: has_target_end_location GO:0005622 ! intracellular anatomical structure -intersection_of: has_target_start_location GO:0005576 ! extracellular region -relationship: has_primary_input CHEBI:18059 ! lipid -relationship: has_target_end_location GO:0005622 ! intracellular anatomical structure -relationship: has_target_start_location GO:0005576 ! extracellular region +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005622 ! has target end location intracellular anatomical structure +intersection_of: RO:0004009 CHEBI:18059 ! has primary input lipid +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005622 ! has target end location intracellular anatomical structure +relationship: RO:0004009 CHEBI:18059 ! has primary input lipid created_by: pg creation_date: 2019-05-22T11:38:15Z @@ -116519,8 +115969,8 @@ namespace: molecular_function def: "Catalytic activity that acts to modify a nucleic acid." [GOC:pg] is_a: GO:0003824 ! catalytic activity intersection_of: GO:0003824 ! catalytic activity -intersection_of: has_primary_input CHEBI:33696 ! nucleic acid -relationship: has_primary_input CHEBI:33696 ! nucleic acid +intersection_of: RO:0004009 CHEBI:33696 ! has primary input nucleic acid +relationship: RO:0004009 CHEBI:33696 ! has primary input nucleic acid property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/21402" xsd:anyURI created_by: pg creation_date: 2021-05-11T06:31:07Z @@ -116533,25 +115983,27 @@ def: "The radial migration of a pyramidal neuron along radial glial cells." [PMI synonym: "radial glia-dependent neuronal migration" EXACT [] is_a: GO:0001764 ! neuron migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000598 ! pyramidal neuron -relationship: results_in_movement_of CL:0000598 ! pyramidal neuron +intersection_of: RO:0002565 CL:0000598 ! results in movement of pyramidal neuron +relationship: RO:0002565 CL:0000598 ! results in movement of pyramidal neuron property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/21476" xsd:anyURI created_by: pg creation_date: 2021-05-25T12:48:12Z [Term] id: GO:0140694 -name: non-membrane-bounded organelle assembly +name: membraneless organelle assembly namespace: biological_process def: "The aggregation, arrangement and bonding together of a set of components to form a non-membrane-bounded organelle." [PMID:28225081] +synonym: "non-membrane-bounded organelle assembly" EXACT [] synonym: "non-membrane-bounded organelle formation" EXACT [] synonym: "non-membrane-enclosed organelle assembly" EXACT [] synonym: "non-membrane-enclosed organelle formation" EXACT [] is_a: GO:0070925 ! organelle assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0043228 ! non-membrane-bounded organelle -relationship: results_in_assembly_of GO:0043228 ! non-membrane-bounded organelle +intersection_of: RO:0002588 GO:0043228 ! results in assembly of membraneless organelle +relationship: RO:0002588 GO:0043228 ! results in assembly of membraneless organelle property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/21939" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29106" xsd:anyURI created_by: pg creation_date: 2021-08-09T15:30:06Z @@ -116563,8 +116015,8 @@ def: "The elimination of ammonium ions from an excretory cell." [PMID:25740900] synonym: "ammonia excretion" RELATED [] is_a: GO:0007588 ! excretion intersection_of: GO:0007588 ! excretion -intersection_of: has_primary_input CHEBI:28938 ! ammonium -relationship: has_primary_input CHEBI:28938 ! ammonium +intersection_of: RO:0004009 CHEBI:28938 ! has primary input ammonium +relationship: RO:0004009 CHEBI:28938 ! has primary input ammonium property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22368" xsd:anyURI created_by: pg creation_date: 2021-11-24T17:55:51Z @@ -116576,12 +116028,12 @@ namespace: biological_process def: "The directed movement of substances from the cytosol into the Golgi apparatus of a cell." [PMID:28373556] is_a: GO:0055085 ! transmembrane transport intersection_of: GO:0055085 ! transmembrane transport -intersection_of: has_target_end_location GO:0005794 ! Golgi apparatus -intersection_of: has_target_start_location GO:0005829 ! cytosol -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_target_end_location GO:0005794 ! Golgi apparatus -relationship: has_target_start_location GO:0005829 ! cytosol -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002338 GO:0005829 ! has target start location cytosol +intersection_of: RO:0002339 GO:0005794 ! has target end location Golgi apparatus +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0002338 GO:0005829 ! has target start location cytosol +relationship: RO:0002339 GO:0005794 ! has target end location Golgi apparatus +relationship: RO:0002342 GO:0016020 ! results in transport across membrane property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/21524" xsd:anyURI created_by: pg creation_date: 2022-05-16T06:59:22Z @@ -116593,14 +116045,14 @@ namespace: biological_process def: "The directed movement of L-phenylalanine from outside of a cell, across the plasma membrane and into the cytosol." [PMID:11069779] is_a: GO:0089718 ! amino acid import across plasma membrane intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:58095 ! L-phenylalanine zwitterion -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005576 ! extracellular region -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:58095 ! L-phenylalanine zwitterion -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005576 ! extracellular region -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:58095 ! has primary input L-phenylalanine zwitterion +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:58095 ! has primary input L-phenylalanine zwitterion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24183" xsd:anyURI created_by: pg creation_date: 2022-10-18T13:11:20Z @@ -116614,8 +116066,8 @@ synonym: "cellular detoxification of metal cation" EXACT [] is_a: GO:0061687 ! detoxification of inorganic compound is_a: GO:1990748 ! cellular detoxification intersection_of: GO:1990748 ! cellular detoxification -intersection_of: has_primary_input CHEBI:25213 ! metal cation -relationship: has_primary_input CHEBI:25213 ! metal cation +intersection_of: RO:0004009 CHEBI:25213 ! has primary input metal cation +relationship: RO:0004009 CHEBI:25213 ! has primary input metal cation created_by: pg creation_date: 2022-12-07T15:35:18Z @@ -116629,8 +116081,8 @@ synonym: "organismal level chemical homeostasis" EXACT [] is_a: GO:0048871 ! multicellular organismal-level homeostasis is_a: GO:0048878 ! chemical homeostasis intersection_of: GO:0048871 ! multicellular organismal-level homeostasis -intersection_of: regulates_levels_of CHEBI:24431 ! chemical entity -relationship: regulates_levels_of CHEBI:24431 ! chemical entity +intersection_of: RO:0002332 CHEBI:24431 ! regulates levels of chemical entity +relationship: RO:0002332 CHEBI:24431 ! regulates levels of chemical entity property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24554" xsd:anyURI created_by: pg creation_date: 2022-12-12T09:11:06Z @@ -116642,8 +116094,8 @@ namespace: biological_process def: "A homeostatic process involved in the maintenance of a steady state level of nucleotides within a cell." [PMID:23416111, PMID:34880500] is_a: GO:0055082 ! intracellular chemical homeostasis intersection_of: GO:0019725 ! cellular homeostasis -intersection_of: regulates_levels_of CHEBI:36976 ! nucleotide -relationship: regulates_levels_of CHEBI:36976 ! nucleotide +intersection_of: RO:0002332 CHEBI:36976 ! regulates levels of nucleotide +relationship: RO:0002332 CHEBI:36976 ! regulates levels of nucleotide property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24665" xsd:anyURI created_by: pg creation_date: 2023-01-10T14:13:19Z @@ -116655,8 +116107,8 @@ namespace: biological_process def: "A homeostatic process involved in the maintenance of a steady state level of nucleosides within a cell." [PMID:23416111, PMID:34880500] is_a: GO:0055082 ! intracellular chemical homeostasis intersection_of: GO:0019725 ! cellular homeostasis -intersection_of: regulates_levels_of CHEBI:33838 ! nucleoside -relationship: regulates_levels_of CHEBI:33838 ! nucleoside +intersection_of: RO:0002332 CHEBI:33838 ! regulates levels of nucleoside +relationship: RO:0002332 CHEBI:33838 ! regulates levels of nucleoside property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24665" xsd:anyURI created_by: pg creation_date: 2023-01-10T14:14:42Z @@ -116672,8 +116124,8 @@ is_a: GO:0009059 ! macromolecule biosynthetic process is_a: GO:0034654 ! nucleobase-containing compound biosynthetic process is_a: GO:0090304 ! nucleic acid metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:33696 ! nucleic acid -relationship: has_primary_output CHEBI:33696 ! nucleic acid +intersection_of: RO:0004008 CHEBI:33696 ! has primary output nucleic acid +relationship: RO:0004008 CHEBI:33696 ! has primary output nucleic acid property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27408" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27633" xsd:anyURI created_by: pg @@ -116690,24 +116142,13 @@ is_a: GO:0009057 ! macromolecule catabolic process is_a: GO:0034655 ! nucleobase-containing compound catabolic process is_a: GO:0090304 ! nucleic acid metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:33696 ! nucleic acid -relationship: has_primary_input CHEBI:33696 ! nucleic acid +intersection_of: RO:0004009 CHEBI:33696 ! has primary input nucleic acid +relationship: RO:0004009 CHEBI:33696 ! has primary input nucleic acid property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27408" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27633" xsd:anyURI created_by: pg creation_date: 2024-03-25T07:35:06Z -[Term] -id: GO:0141193 -name: nuclear receptor-mediated signaling pathway -namespace: biological_process -def: "The series of molecular signals initiated by a signaling molecule binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription." [PMID:25614732] -synonym: "nuclear receptor signaling pathway" EXACT [] -is_a: GO:0030522 ! intracellular receptor signaling pathway -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27599" xsd:anyURI -created_by: pg -creation_date: 2024-04-12T13:08:13Z - [Term] id: GO:0150031 name: regulation of protein localization to lysosome @@ -116715,8 +116156,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of protein localization to lysosome." [GOC:aruk, GOC:bc, PMID:24305806] is_a: GO:0032880 ! regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061462 ! protein localization to lysosome -relationship: regulates GO:0061462 ! protein localization to lysosome +intersection_of: RO:0002211 GO:0061462 ! regulates (processual) protein localization to lysosome +relationship: RO:0002211 GO:0061462 ! regulates (processual) protein localization to lysosome created_by: bc creation_date: 2018-02-06T17:07:03Z @@ -116728,8 +116169,8 @@ def: "Any process that activates or increases the frequency, rate or extent of p is_a: GO:0150031 ! regulation of protein localization to lysosome is_a: GO:1903829 ! positive regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061462 ! protein localization to lysosome -relationship: positively_regulates GO:0061462 ! protein localization to lysosome +intersection_of: RO:0002213 GO:0061462 ! positively regulates protein localization to lysosome +relationship: RO:0002213 GO:0061462 ! positively regulates protein localization to lysosome created_by: bc creation_date: 2018-02-06T17:11:02Z @@ -116741,8 +116182,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0150031 ! regulation of protein localization to lysosome is_a: GO:1903828 ! negative regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0061462 ! protein localization to lysosome -relationship: negatively_regulates GO:0061462 ! protein localization to lysosome +intersection_of: RO:0002212 GO:0061462 ! negatively regulates protein localization to lysosome +relationship: RO:0002212 GO:0061462 ! negatively regulates protein localization to lysosome created_by: bc creation_date: 2018-02-06T17:14:16Z @@ -116755,9 +116196,9 @@ subset: goslim_synapse is_a: GO:0051963 ! regulation of synapse assembly is_a: GO:0099175 ! regulation of postsynapse organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0099068 ! postsynapse assembly -relationship: regulates GO:0007416 ! synapse assembly -relationship: regulates GO:0099068 ! postsynapse assembly +intersection_of: RO:0002211 GO:0099068 ! regulates (processual) postsynapse assembly +relationship: RO:0002211 GO:0007416 ! regulates (processual) synapse assembly +relationship: RO:0002211 GO:0099068 ! regulates (processual) postsynapse assembly created_by: bc creation_date: 2018-05-08T16:38:55Z @@ -116791,10 +116232,10 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of neuroinflammatory response." [GOC:aruk, GOC:bc, PMID:10981966, PMID:11099416, PMID:18164423] is_a: GO:0050727 ! regulation of inflammatory response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0150076 ! neuroinflammatory response +intersection_of: RO:0002211 GO:0150076 ! regulates (processual) neuroinflammatory response relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata -relationship: regulates GO:0150076 ! neuroinflammatory response +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata +relationship: RO:0002211 GO:0150076 ! regulates (processual) neuroinflammatory response created_by: bc creation_date: 2018-07-26T12:32:18Z @@ -116806,8 +116247,8 @@ def: "Any process that activates or increases the frequency, rate or extent of n is_a: GO:0050729 ! positive regulation of inflammatory response is_a: GO:0150077 ! regulation of neuroinflammatory response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0150076 ! neuroinflammatory response -relationship: positively_regulates GO:0150076 ! neuroinflammatory response +intersection_of: RO:0002213 GO:0150076 ! positively regulates neuroinflammatory response +relationship: RO:0002213 GO:0150076 ! positively regulates neuroinflammatory response created_by: bc creation_date: 2018-07-26T12:35:50Z @@ -116819,8 +116260,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0050728 ! negative regulation of inflammatory response is_a: GO:0150077 ! regulation of neuroinflammatory response intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0150076 ! neuroinflammatory response -relationship: negatively_regulates GO:0150076 ! neuroinflammatory response +intersection_of: RO:0002212 GO:0150076 ! negatively regulates neuroinflammatory response +relationship: RO:0002212 GO:0150076 ! negatively regulates neuroinflammatory response created_by: bc creation_date: 2018-07-26T12:38:08Z @@ -116838,10 +116279,10 @@ synonym: "glial cell-neurone signalling" EXACT [] synonym: "glial cell-neurone singaling" EXACT [] is_a: GO:0007267 ! cell-cell signaling intersection_of: GO:0007267 ! cell-cell signaling -intersection_of: has_end_location CL:0000540 ! neuron -intersection_of: has_start_location CL:0000125 ! glial cell -relationship: has_end_location CL:0000540 ! neuron -relationship: has_start_location CL:0000125 ! glial cell +intersection_of: RO:0002231 CL:0000125 ! has start location glial cell +intersection_of: RO:0002232 CL:0000540 ! has end location neuron +relationship: RO:0002231 CL:0000125 ! has start location glial cell +relationship: RO:0002232 CL:0000540 ! has end location neuron created_by: bc creation_date: 2018-12-17T12:28:09Z @@ -116859,10 +116300,10 @@ synonym: "neurone-glial cell signaling" EXACT [] synonym: "neurone-glial cell signalling" EXACT [] is_a: GO:0007267 ! cell-cell signaling intersection_of: GO:0007267 ! cell-cell signaling -intersection_of: has_end_location CL:0000125 ! glial cell -intersection_of: has_start_location CL:0000540 ! neuron -relationship: has_end_location CL:0000125 ! glial cell -relationship: has_start_location CL:0000540 ! neuron +intersection_of: RO:0002231 CL:0000540 ! has start location neuron +intersection_of: RO:0002232 CL:0000125 ! has end location glial cell +relationship: RO:0002231 CL:0000540 ! has start location neuron +relationship: RO:0002232 CL:0000125 ! has end location glial cell created_by: bc creation_date: 2018-12-17T12:30:12Z @@ -116874,8 +116315,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent synonym: "repression of monocyte activation" EXACT [] is_a: GO:0002695 ! negative regulation of leukocyte activation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042117 ! monocyte activation -relationship: negatively_regulates GO:0042117 ! monocyte activation +intersection_of: RO:0002212 GO:0042117 ! negatively regulates monocyte activation +relationship: RO:0002212 GO:0042117 ! negatively regulates monocyte activation created_by: bc creation_date: 2019-04-26T20:01:24Z @@ -116888,10 +116329,10 @@ synonym: "transport across BBB" EXACT [] synonym: "transport across blood brain barrier" EXACT [] is_a: GO:0010232 ! vascular transport intersection_of: GO:0010232 ! vascular transport -intersection_of: results_in_transport_across UBERON:0000120 ! blood brain barrier +intersection_of: RO:0002342 UBERON:0000120 ! results in transport across blood brain barrier relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa -relationship: results_in_transport_across UBERON:0000120 ! blood brain barrier +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa +relationship: RO:0002342 UBERON:0000120 ! results in transport across blood brain barrier created_by: bc creation_date: 2019-05-27T09:12:03Z @@ -116902,8 +116343,8 @@ namespace: biological_process def: "A process in which a protein is transported to, or maintained, in a location within a cell-cell junction." [GOC:aruk, GOC:bc, PMID:26706435] is_a: GO:1902414 ! protein localization to cell junction intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005911 ! cell-cell junction -relationship: has_target_end_location GO:0005911 ! cell-cell junction +intersection_of: RO:0002339 GO:0005911 ! has target end location cell-cell junction +relationship: RO:0002339 GO:0005911 ! has target end location cell-cell junction created_by: bc creation_date: 2019-06-11T11:00:18Z @@ -116914,8 +116355,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of protein localization to cell-cell junction." [GOC:aruk, GOC:bc, PMID:26706435] is_a: GO:0032880 ! regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0150105 ! protein localization to cell-cell junction -relationship: regulates GO:0150105 ! protein localization to cell-cell junction +intersection_of: RO:0002211 GO:0150105 ! regulates (processual) protein localization to cell-cell junction +relationship: RO:0002211 GO:0150105 ! regulates (processual) protein localization to cell-cell junction created_by: bc creation_date: 2019-06-11T11:17:15Z @@ -116927,8 +116368,8 @@ def: "Any process that activates or increases the frequency, rate or extent of p is_a: GO:0150106 ! regulation of protein localization to cell-cell junction is_a: GO:1903829 ! positive regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0150105 ! protein localization to cell-cell junction -relationship: positively_regulates GO:0150105 ! protein localization to cell-cell junction +intersection_of: RO:0002213 GO:0150105 ! positively regulates protein localization to cell-cell junction +relationship: RO:0002213 GO:0150105 ! positively regulates protein localization to cell-cell junction created_by: bc creation_date: 2019-06-11T11:23:58Z @@ -116939,8 +116380,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of transepithelial transport." [GOC:aruk, PMID:27593915] is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070633 ! transepithelial transport -relationship: regulates GO:0070633 ! transepithelial transport +intersection_of: RO:0002211 GO:0070633 ! regulates (processual) transepithelial transport +relationship: RO:0002211 GO:0070633 ! regulates (processual) transepithelial transport created_by: bc creation_date: 2019-09-15T07:16:49Z @@ -116953,8 +116394,8 @@ synonym: "negative regulation of protein localisation to cell-cell junction" EXA is_a: GO:0150106 ! regulation of protein localization to cell-cell junction is_a: GO:1903828 ! negative regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0150105 ! protein localization to cell-cell junction -relationship: negatively_regulates GO:0150105 ! protein localization to cell-cell junction +intersection_of: RO:0002212 GO:0150105 ! negatively regulates protein localization to cell-cell junction +relationship: RO:0002212 GO:0150105 ! negatively regulates protein localization to cell-cell junction created_by: bc creation_date: 2019-11-21T13:53:34Z @@ -116966,8 +116407,8 @@ def: "The disaggregation of a cell junction into its constituent components." [G is_a: GO:0022411 ! cellular component disassembly is_a: GO:0034330 ! cell junction organization intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0030054 ! cell junction -relationship: results_in_disassembly_of GO:0030054 ! cell junction +intersection_of: RO:0002590 GO:0030054 ! results in disassembly of cell junction +relationship: RO:0002590 GO:0030054 ! results in disassembly of cell junction created_by: bc creation_date: 2019-12-08T11:12:13Z @@ -116979,8 +116420,8 @@ def: "The disaggregation of a cell-cell junction into its constituent components is_a: GO:0045216 ! cell-cell junction organization is_a: GO:0150146 ! cell junction disassembly intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0005911 ! cell-cell junction -relationship: results_in_disassembly_of GO:0005911 ! cell-cell junction +intersection_of: RO:0002590 GO:0005911 ! results in disassembly of cell-cell junction +relationship: RO:0002590 GO:0005911 ! results in disassembly of cell-cell junction created_by: bc creation_date: 2019-12-08T11:16:14Z @@ -116995,8 +116436,8 @@ synonym: "transport across blood/cerebrospinal fluid barrier" EXACT [] synonym: "transport across blood/CSF barrier" EXACT [] is_a: GO:0010232 ! vascular transport intersection_of: GO:0006810 ! transport -intersection_of: results_in_transport_across UBERON:0003210 ! blood-cerebrospinal fluid barrier -relationship: results_in_transport_across UBERON:0003210 ! blood-cerebrospinal fluid barrier +intersection_of: RO:0002342 UBERON:0003210 ! results in transport across blood-cerebrospinal fluid barrier +relationship: RO:0002342 UBERON:0003210 ! results in transport across blood-cerebrospinal fluid barrier created_by: bc creation_date: 2020-03-26T14:43:04Z @@ -117008,9 +116449,9 @@ def: "Any process that modulates the frequency, rate or extent of transport acro is_a: GO:0044057 ! regulation of system process is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0150104 ! transport across blood-brain barrier +intersection_of: RO:0002211 GO:0150104 ! regulates (processual) transport across blood-brain barrier relationship: part_of GO:0043114 ! regulation of vascular permeability -relationship: regulates GO:0150104 ! transport across blood-brain barrier +relationship: RO:0002211 GO:0150104 ! regulates (processual) transport across blood-brain barrier created_by: bc creation_date: 2020-03-26T19:22:26Z @@ -117023,9 +116464,9 @@ is_a: GO:0051050 ! positive regulation of transport is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:0150200 ! regulation of transport across blood-brain barrier intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0150104 ! transport across blood-brain barrier +intersection_of: RO:0002213 GO:0150104 ! positively regulates transport across blood-brain barrier relationship: part_of GO:0043117 ! positive regulation of vascular permeability -relationship: positively_regulates GO:0150104 ! transport across blood-brain barrier +relationship: RO:0002213 GO:0150104 ! positively regulates transport across blood-brain barrier created_by: bc creation_date: 2020-03-26T19:26:38Z @@ -117038,9 +116479,9 @@ is_a: GO:0051051 ! negative regulation of transport is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:0150200 ! regulation of transport across blood-brain barrier intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0150104 ! transport across blood-brain barrier -relationship: negatively_regulates GO:0150104 ! transport across blood-brain barrier +intersection_of: RO:0002212 GO:0150104 ! negatively regulates transport across blood-brain barrier relationship: part_of GO:0043116 ! negative regulation of vascular permeability +relationship: RO:0002212 GO:0150104 ! negatively regulates transport across blood-brain barrier created_by: bc creation_date: 2020-03-26T19:28:51Z @@ -117051,8 +116492,8 @@ namespace: biological_process def: "The multiplication or reproduction of Leydig cells, resulting in the expansion of a cell population. Leydig cells are interstitial cells located adjacent to the seminiferous tubules in the testis which produce testosterone." [PMID:29632025] is_a: GO:0008283 ! cell population proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000178 ! Leydig cell -relationship: acts_on_population_of CL:0000178 ! Leydig cell +intersection_of: RO:0012003 CL:0000178 ! acts on population of Leydig cell +relationship: RO:0012003 CL:0000178 ! acts on population of Leydig cell created_by: rynl creation_date: 2022-02-08T20:09:53Z @@ -117064,8 +116505,8 @@ def: "The process whose specific outcome is the progression of a somatic sensory synonym: "somatosensory system development" EXACT [] is_a: GO:0048880 ! sensory system development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003942 ! somatosensory system -relationship: results_in_development_of UBERON:0003942 ! somatosensory system +intersection_of: RO:0002296 UBERON:0003942 ! results in development of somatosensory system +relationship: RO:0002296 UBERON:0003942 ! results in development of somatosensory system created_by: rynl creation_date: 2022-07-07T16:49:26Z @@ -117077,8 +116518,8 @@ def: "The regulated release of catecholamine by a cell in which the catecholamin is_a: GO:0007269 ! neurotransmitter secretion is_a: GO:0050432 ! catecholamine secretion intersection_of: GO:0007269 ! neurotransmitter secretion -intersection_of: has_primary_input CHEBI:33567 ! catecholamine -relationship: has_primary_input CHEBI:33567 ! catecholamine +intersection_of: RO:0004009 CHEBI:33567 ! has primary input catecholamine +relationship: RO:0004009 CHEBI:33567 ! has primary input catecholamine property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23804" xsd:anyURI created_by: rynl creation_date: 2022-08-17T00:36:44Z @@ -117090,8 +116531,8 @@ namespace: biological_process def: "The process of fusing together the edges of a craniofacial suture." [PMID:33842480] is_a: GO:0060349 ! bone morphogenesis intersection_of: GO:0060349 ! bone morphogenesis -intersection_of: results_in_fusion_of UBERON:0009198 ! craniofacial suture -relationship: results_in_fusion_of UBERON:0009198 ! craniofacial suture +intersection_of: RO:0012008 UBERON:0009198 ! results in fusion of craniofacial suture +relationship: RO:0012008 UBERON:0009198 ! results in fusion of craniofacial suture property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23213" xsd:anyURI created_by: rynl creation_date: 2022-08-19T23:18:54Z @@ -117104,8 +116545,8 @@ def: "The process by which a single lipid droplet is created from the fusion of is_a: GO:0034389 ! lipid droplet organization is_a: GO:0048284 ! organelle fusion intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_fusion_of GO:0005811 ! lipid droplet -relationship: results_in_fusion_of GO:0005811 ! lipid droplet +intersection_of: RO:0012008 GO:0005811 ! results in fusion of lipid droplet +relationship: RO:0012008 GO:0005811 ! results in fusion of lipid droplet created_by: rynl creation_date: 2023-01-31T00:34:32Z @@ -117116,8 +116557,8 @@ namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate or extent of lipid droplet fusion." [PMID:36477540] is_a: GO:0010639 ! negative regulation of organelle organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0160077 ! lipid droplet fusion -relationship: negatively_regulates GO:0160077 ! lipid droplet fusion +intersection_of: RO:0002212 GO:0160077 ! negatively regulates lipid droplet fusion +relationship: RO:0002212 GO:0160077 ! negatively regulates lipid droplet fusion created_by: rynl creation_date: 2023-01-31T00:52:25Z @@ -117128,8 +116569,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of cordate pharynx over time, from its formation to the mature structure." [PMID:23020903] is_a: GO:0060465 ! pharynx development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001042 ! chordate pharynx -relationship: results_in_development_of UBERON:0001042 ! chordate pharynx +intersection_of: RO:0002296 UBERON:0001042 ! results in development of chordate pharynx +relationship: RO:0002296 UBERON:0001042 ! results in development of chordate pharynx property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/18285" xsd:anyURI created_by: rynl creation_date: 2023-08-29T21:05:28Z @@ -117141,8 +116582,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of nematode pharynx over time, from its formation to the mature structure." [PMID:18050503] is_a: GO:0060465 ! pharynx development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0015232 ! nematode pharynx -relationship: results_in_development_of UBERON:0015232 ! nematode pharynx +intersection_of: RO:0002296 UBERON:0015232 ! results in development of nematode pharynx +relationship: RO:0002296 UBERON:0015232 ! results in development of nematode pharynx property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/18285" xsd:anyURI created_by: rynl creation_date: 2023-08-29T22:05:32Z @@ -117154,8 +116595,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of insect pharynx over time, from its formation to the mature structure." [PMID:10952900] is_a: GO:0060465 ! pharynx development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:6005380 ! insect pharynx -relationship: results_in_development_of UBERON:6005380 ! insect pharynx +intersection_of: RO:0002296 UBERON:6005380 ! results in development of insect pharynx +relationship: RO:0002296 UBERON:6005380 ! results in development of insect pharynx property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/18285" xsd:anyURI created_by: rynl creation_date: 2023-08-29T22:14:25Z @@ -117167,8 +116608,8 @@ namespace: molecular_function def: "Enables the transfer of histamine from one side of a membrane to the other." [PMID:36288320] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:58432 ! histaminium -relationship: has_primary_input CHEBI:58432 ! histaminium +intersection_of: RO:0004009 CHEBI:58432 ! has primary input histaminium +relationship: RO:0004009 CHEBI:58432 ! has primary input histaminium property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27277" xsd:anyURI created_by: rynl creation_date: 2024-03-15T16:40:36Z @@ -117182,8 +116623,8 @@ synonym: "L-alpha-amino acid metabolism" EXACT [] synonym: "L-amino acid metabolism" EXACT [] is_a: GO:1901605 ! alpha-amino acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:59869 ! L-alpha-amino acid zwitterion -relationship: has_primary_input_or_output CHEBI:59869 ! L-alpha-amino acid zwitterion +intersection_of: RO:0004007 CHEBI:59869 ! has primary input or output L-alpha-amino acid zwitterion +relationship: RO:0004007 CHEBI:59869 ! has primary input or output L-alpha-amino acid zwitterion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23268" xsd:anyURI created_by: ew creation_date: 2023-11-20T23:41:23Z @@ -117200,8 +116641,8 @@ synonym: "L-amino acid synthesis" EXACT [] is_a: GO:0170033 ! L-amino acid metabolic process is_a: GO:1901607 ! alpha-amino acid biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:59869 ! L-alpha-amino acid zwitterion -relationship: has_primary_output CHEBI:59869 ! L-alpha-amino acid zwitterion +intersection_of: RO:0004008 CHEBI:59869 ! has primary output L-alpha-amino acid zwitterion +relationship: RO:0004008 CHEBI:59869 ! has primary output L-alpha-amino acid zwitterion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23268" xsd:anyURI created_by: ew creation_date: 2023-11-20T23:42:06Z @@ -117217,8 +116658,8 @@ synonym: "L-amino acid degradation" EXACT [] is_a: GO:0170033 ! L-amino acid metabolic process is_a: GO:1901606 ! alpha-amino acid catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:59869 ! L-alpha-amino acid zwitterion -relationship: has_primary_input CHEBI:59869 ! L-alpha-amino acid zwitterion +intersection_of: RO:0004009 CHEBI:59869 ! has primary input L-alpha-amino acid zwitterion +relationship: RO:0004009 CHEBI:59869 ! has primary input L-alpha-amino acid zwitterion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23268" xsd:anyURI created_by: ew creation_date: 2023-11-21T00:55:07Z @@ -117234,10 +116675,9 @@ synonym: "proteinogenic amino acid formation" EXACT [] synonym: "proteinogenic amino acid synthesis" EXACT [] is_a: GO:0016053 ! organic acid biosynthetic process is_a: GO:0170039 ! proteinogenic amino acid metabolic process -is_a: GO:1901566 ! organonitrogen compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:83813 ! proteinogenic amino acid -relationship: has_primary_output CHEBI:83813 ! proteinogenic amino acid +intersection_of: RO:0004008 CHEBI:83813 ! has primary output proteinogenic amino acid +relationship: RO:0004008 CHEBI:83813 ! has primary output proteinogenic amino acid property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23268" xsd:anyURI created_by: ew creation_date: 2023-12-18T16:28:19Z @@ -117250,10 +116690,9 @@ def: "The chemical reactions and pathways involving any amino acid that is incor synonym: "proteinogenic amino acid metabolism" EXACT [] is_a: GO:0006082 ! organic acid metabolic process is_a: GO:0006520 ! amino acid metabolic process -is_a: GO:1901564 ! organonitrogen compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:83813 ! proteinogenic amino acid -relationship: has_primary_input_or_output CHEBI:83813 ! proteinogenic amino acid +intersection_of: RO:0004007 CHEBI:83813 ! has primary input or output proteinogenic amino acid +relationship: RO:0004007 CHEBI:83813 ! has primary input or output proteinogenic amino acid property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23268" xsd:anyURI created_by: ew creation_date: 2023-12-18T17:31:08Z @@ -117268,10 +116707,9 @@ synonym: "proteinogenic amino acid catabolism" EXACT [] synonym: "proteinogenic amino acid degradation" EXACT [] is_a: GO:0016054 ! organic acid catabolic process is_a: GO:0170039 ! proteinogenic amino acid metabolic process -is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:83813 ! proteinogenic amino acid -relationship: has_primary_input CHEBI:83813 ! proteinogenic amino acid +intersection_of: RO:0004009 CHEBI:83813 ! has primary input proteinogenic amino acid +relationship: RO:0004009 CHEBI:83813 ! has primary input proteinogenic amino acid property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23268" xsd:anyURI created_by: ew creation_date: 2023-12-18T17:41:14Z @@ -117284,10 +116722,9 @@ def: "The chemical reactions and pathways involving non-proteingenic amino acids synonym: "non-proteinogenic amino acid metabolism" EXACT [] is_a: GO:0006082 ! organic acid metabolic process is_a: GO:0006520 ! amino acid metabolic process -is_a: GO:1901564 ! organonitrogen compound metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:83820 ! non-proteinogenic amino acid -relationship: has_primary_input_or_output CHEBI:83820 ! non-proteinogenic amino acid +intersection_of: RO:0004007 CHEBI:83820 ! has primary input or output non-proteinogenic amino acid +relationship: RO:0004007 CHEBI:83820 ! has primary input or output non-proteinogenic amino acid property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23269" xsd:anyURI created_by: ew creation_date: 2023-12-18T17:57:55Z @@ -117303,10 +116740,9 @@ synonym: "non-proteinogenic amino acid synthesis" EXACT [] synonym: "non-proteinogenic biosynthesis" EXACT [] is_a: GO:0016053 ! organic acid biosynthetic process is_a: GO:0170041 ! non-proteinogenic amino acid metabolic process -is_a: GO:1901566 ! organonitrogen compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:83820 ! non-proteinogenic amino acid -relationship: has_primary_output CHEBI:83820 ! non-proteinogenic amino acid +intersection_of: RO:0004008 CHEBI:83820 ! has primary output non-proteinogenic amino acid +relationship: RO:0004008 CHEBI:83820 ! has primary output non-proteinogenic amino acid property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23269" xsd:anyURI created_by: ew creation_date: 2023-12-18T19:03:08Z @@ -117321,10 +116757,9 @@ synonym: "non-proteinogenic amino acid catabolism" EXACT [] synonym: "non-proteinogenic amino acid degradation" EXACT [] is_a: GO:0016054 ! organic acid catabolic process is_a: GO:0170041 ! non-proteinogenic amino acid metabolic process -is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:83820 ! non-proteinogenic amino acid -relationship: has_primary_input CHEBI:83820 ! non-proteinogenic amino acid +intersection_of: RO:0004009 CHEBI:83820 ! has primary input non-proteinogenic amino acid +relationship: RO:0004009 CHEBI:83820 ! has primary input non-proteinogenic amino acid property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23269" xsd:anyURI created_by: ew creation_date: 2023-12-18T19:27:05Z @@ -117338,8 +116773,8 @@ subset: gocheck_do_not_annotate is_a: GO:0005319 ! lipid transporter activity is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:18059 ! lipid -relationship: has_primary_input CHEBI:18059 ! lipid +intersection_of: RO:0004009 CHEBI:18059 ! has primary input lipid +relationship: RO:0004009 CHEBI:18059 ! has primary input lipid property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27252" xsd:anyURI created_by: ew creation_date: 2024-03-15T18:47:58Z @@ -117354,8 +116789,8 @@ is_a: GO:0010976 ! positive regulation of neuron projection development is_a: GO:0050773 ! regulation of dendrite development is_a: GO:0051094 ! positive regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0016358 ! dendrite development -relationship: positively_regulates GO:0016358 ! dendrite development +intersection_of: RO:0002213 GO:0016358 ! positively regulates dendrite development +relationship: RO:0002213 GO:0016358 ! positively regulates dendrite development created_by: hjd creation_date: 2012-01-09T10:41:31Z @@ -117367,8 +116802,8 @@ def: "Any process that modulates the frequency, rate or extent of cytokine produ synonym: "regulation of cytokine production involved in acute inflammatory response" NARROW [GOC:TermGenie] is_a: GO:0001817 ! regulation of cytokine production intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002534 ! cytokine production involved in inflammatory response -relationship: regulates GO:0002534 ! cytokine production involved in inflammatory response +intersection_of: RO:0002211 GO:0002534 ! regulates (processual) cytokine production involved in inflammatory response +relationship: RO:0002211 GO:0002534 ! regulates (processual) cytokine production involved in inflammatory response created_by: rph creation_date: 2012-01-11T09:34:27Z @@ -117383,8 +116818,8 @@ synonym: "negative regulation of cytokine production involved in acute inflammat is_a: GO:0001818 ! negative regulation of cytokine production is_a: GO:1900015 ! regulation of cytokine production involved in inflammatory response intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002534 ! cytokine production involved in inflammatory response -relationship: negatively_regulates GO:0002534 ! cytokine production involved in inflammatory response +intersection_of: RO:0002212 GO:0002534 ! negatively regulates cytokine production involved in inflammatory response +relationship: RO:0002212 GO:0002534 ! negatively regulates cytokine production involved in inflammatory response created_by: rph creation_date: 2012-01-11T09:34:31Z @@ -117399,8 +116834,8 @@ synonym: "up regulation of cytokine production involved in inflammatory response is_a: GO:0001819 ! positive regulation of cytokine production is_a: GO:1900015 ! regulation of cytokine production involved in inflammatory response intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002534 ! cytokine production involved in inflammatory response -relationship: positively_regulates GO:0002534 ! cytokine production involved in inflammatory response +intersection_of: RO:0002213 GO:0002534 ! positively regulates cytokine production involved in inflammatory response +relationship: RO:0002213 GO:0002534 ! positively regulates cytokine production involved in inflammatory response created_by: rph creation_date: 2012-01-11T09:34:35Z @@ -117412,8 +116847,8 @@ def: "Any process that modulates the frequency, rate or extent of hemostasis." [ is_a: GO:0050789 ! regulation of biological process is_a: GO:0050878 ! regulation of body fluid levels intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007599 ! hemostasis -relationship: regulates GO:0007599 ! hemostasis +intersection_of: RO:0002211 GO:0007599 ! regulates (processual) hemostasis +relationship: RO:0002211 GO:0007599 ! regulates (processual) hemostasis created_by: jl creation_date: 2012-01-19T03:23:38Z @@ -117429,8 +116864,8 @@ synonym: "inhibition of hemostasis" NARROW [GOC:TermGenie] is_a: GO:0048519 ! negative regulation of biological process is_a: GO:1900046 ! regulation of hemostasis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007599 ! hemostasis -relationship: negatively_regulates GO:0007599 ! hemostasis +intersection_of: RO:0002212 GO:0007599 ! negatively regulates hemostasis +relationship: RO:0002212 GO:0007599 ! negatively regulates hemostasis created_by: jl creation_date: 2012-01-19T03:23:42Z @@ -117446,8 +116881,8 @@ synonym: "upregulation of hemostasis" EXACT [GOC:TermGenie] is_a: GO:0048518 ! positive regulation of biological process is_a: GO:1900046 ! regulation of hemostasis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007599 ! hemostasis -relationship: positively_regulates GO:0007599 ! hemostasis +intersection_of: RO:0002213 GO:0007599 ! positively regulates hemostasis +relationship: RO:0002213 GO:0007599 ! positively regulates hemostasis created_by: jl creation_date: 2012-01-19T03:23:45Z @@ -117484,8 +116919,8 @@ is_a: GO:0034249 ! negative regulation of amide metabolic process is_a: GO:0090155 ! negative regulation of sphingolipid biosynthetic process is_a: GO:2000303 ! regulation of ceramide biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0046513 ! ceramide biosynthetic process -relationship: negatively_regulates GO:0046513 ! ceramide biosynthetic process +intersection_of: RO:0002212 GO:0046513 ! negatively regulates ceramide biosynthetic process +relationship: RO:0002212 GO:0046513 ! negatively regulates ceramide biosynthetic process created_by: dph creation_date: 2012-01-25T03:18:07Z @@ -117496,8 +116931,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of neuromuscular synaptic transmission." [GOC:kmv, GOC:TermGenie] is_a: GO:0050804 ! modulation of chemical synaptic transmission intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007274 ! neuromuscular synaptic transmission -relationship: regulates GO:0007274 ! neuromuscular synaptic transmission +intersection_of: RO:0002211 GO:0007274 ! regulates (processual) neuromuscular synaptic transmission +relationship: RO:0002211 GO:0007274 ! regulates (processual) neuromuscular synaptic transmission created_by: kmv creation_date: 2012-01-26T10:14:10Z @@ -117513,8 +116948,8 @@ synonym: "inhibition of neuromuscular synaptic transmission" RELATED [GOC:TermGe is_a: GO:0050805 ! negative regulation of synaptic transmission is_a: GO:1900073 ! regulation of neuromuscular synaptic transmission intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007274 ! neuromuscular synaptic transmission -relationship: negatively_regulates GO:0007274 ! neuromuscular synaptic transmission +intersection_of: RO:0002212 GO:0007274 ! negatively regulates neuromuscular synaptic transmission +relationship: RO:0002212 GO:0007274 ! negatively regulates neuromuscular synaptic transmission created_by: kmv creation_date: 2012-01-26T10:14:18Z @@ -117530,8 +116965,8 @@ synonym: "upregulation of neuromuscular synaptic transmission" RELATED [GOC:Term is_a: GO:0050806 ! positive regulation of synaptic transmission is_a: GO:1900073 ! regulation of neuromuscular synaptic transmission intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007274 ! neuromuscular synaptic transmission -relationship: positively_regulates GO:0007274 ! neuromuscular synaptic transmission +intersection_of: RO:0002213 GO:0007274 ! positively regulates neuromuscular synaptic transmission +relationship: RO:0002213 GO:0007274 ! positively regulates neuromuscular synaptic transmission created_by: kmv creation_date: 2012-01-26T10:14:22Z @@ -117543,8 +116978,8 @@ def: "Any process that modulates the frequency, rate or extent of cellular respo is_a: GO:0048583 ! regulation of response to stimulus is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032869 ! cellular response to insulin stimulus -relationship: regulates GO:0032869 ! cellular response to insulin stimulus +intersection_of: RO:0002211 GO:0032869 ! regulates (processual) cellular response to insulin stimulus +relationship: RO:0002211 GO:0032869 ! regulates (processual) cellular response to insulin stimulus created_by: yaf creation_date: 2012-01-31T11:22:22Z @@ -117561,8 +116996,8 @@ is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:0048585 ! negative regulation of response to stimulus is_a: GO:1900076 ! regulation of cellular response to insulin stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032869 ! cellular response to insulin stimulus -relationship: negatively_regulates GO:0032869 ! cellular response to insulin stimulus +intersection_of: RO:0002212 GO:0032869 ! negatively regulates cellular response to insulin stimulus +relationship: RO:0002212 GO:0032869 ! negatively regulates cellular response to insulin stimulus created_by: yaf creation_date: 2012-01-31T11:23:15Z @@ -117579,8 +117014,8 @@ is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0048584 ! positive regulation of response to stimulus is_a: GO:1900076 ! regulation of cellular response to insulin stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032869 ! cellular response to insulin stimulus -relationship: positively_regulates GO:0032869 ! cellular response to insulin stimulus +intersection_of: RO:0002213 GO:0032869 ! positively regulates cellular response to insulin stimulus +relationship: RO:0002213 GO:0032869 ! positively regulates cellular response to insulin stimulus created_by: yaf creation_date: 2012-01-31T11:24:30Z @@ -117594,8 +117029,8 @@ is_a: GO:0002697 ! regulation of immune effector process is_a: GO:0045577 ! regulation of B cell differentiation is_a: GO:0050776 ! regulation of immune response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002317 ! plasma cell differentiation -relationship: regulates GO:0002317 ! plasma cell differentiation +intersection_of: RO:0002211 GO:0002317 ! regulates (processual) plasma cell differentiation +relationship: RO:0002211 GO:0002317 ! regulates (processual) plasma cell differentiation created_by: bf creation_date: 2012-02-15T10:46:00Z @@ -117618,8 +117053,8 @@ is_a: GO:0045578 ! negative regulation of B cell differentiation is_a: GO:0050777 ! negative regulation of immune response is_a: GO:1900098 ! regulation of plasma cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002317 ! plasma cell differentiation -relationship: negatively_regulates GO:0002317 ! plasma cell differentiation +intersection_of: RO:0002212 GO:0002317 ! negatively regulates plasma cell differentiation +relationship: RO:0002212 GO:0002317 ! negatively regulates plasma cell differentiation created_by: bf creation_date: 2012-02-15T10:46:05Z @@ -117642,8 +117077,8 @@ is_a: GO:0045579 ! positive regulation of B cell differentiation is_a: GO:0050778 ! positive regulation of immune response is_a: GO:1900098 ! regulation of plasma cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002317 ! plasma cell differentiation -relationship: positively_regulates GO:0002317 ! plasma cell differentiation +intersection_of: RO:0002213 GO:0002317 ! positively regulates plasma cell differentiation +relationship: RO:0002213 GO:0002317 ! positively regulates plasma cell differentiation created_by: bf creation_date: 2012-02-15T10:46:08Z @@ -117656,8 +117091,8 @@ synonym: "regulation of signaling pathway in extracellular region" EXACT [GOC:Te synonym: "regulation of signalling pathway in extracellular region" EXACT [GOC:TermGenie] is_a: GO:0009966 ! regulation of signal transduction intersection_of: GO:0009966 ! regulation of signal transduction -intersection_of: occurs_in GO:0005576 ! extracellular region -relationship: occurs_in GO:0005576 ! extracellular region +intersection_of: BFO:0000066 GO:0005576 ! occurs in extracellular region +relationship: BFO:0000066 GO:0005576 ! occurs in extracellular region created_by: bf creation_date: 2012-02-22T10:21:48Z @@ -117676,8 +117111,8 @@ synonym: "negative regulation of signalling pathway in extracellular region" EXA is_a: GO:0009968 ! negative regulation of signal transduction is_a: GO:1900115 ! extracellular regulation of signal transduction intersection_of: GO:0009968 ! negative regulation of signal transduction -intersection_of: occurs_in GO:0005576 ! extracellular region -relationship: occurs_in GO:0005576 ! extracellular region +intersection_of: BFO:0000066 GO:0005576 ! occurs in extracellular region +relationship: BFO:0000066 GO:0005576 ! occurs in extracellular region created_by: bf creation_date: 2012-02-22T10:27:56Z @@ -117688,8 +117123,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of execution phase of apoptosis." [GOC:mtg_apoptosis, GOC:TermGenie] is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0097194 ! execution phase of apoptosis -relationship: regulates GO:0097194 ! execution phase of apoptosis +intersection_of: RO:0002211 GO:0097194 ! regulates (processual) execution phase of apoptosis +relationship: RO:0002211 GO:0097194 ! regulates (processual) execution phase of apoptosis created_by: pr creation_date: 2012-02-22T11:26:20Z @@ -117705,9 +117140,9 @@ synonym: "inhibition of execution phase of apoptosis" NARROW [GOC:TermGenie] is_a: GO:0043066 ! negative regulation of apoptotic process is_a: GO:1900117 ! regulation of execution phase of apoptosis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0097194 ! execution phase of apoptosis -relationship: negatively_regulates GO:0006915 ! apoptotic process -relationship: negatively_regulates GO:0097194 ! execution phase of apoptosis +intersection_of: RO:0002212 GO:0097194 ! negatively regulates execution phase of apoptosis +relationship: RO:0002212 GO:0006915 ! negatively regulates apoptotic process +relationship: RO:0002212 GO:0097194 ! negatively regulates execution phase of apoptosis created_by: pr creation_date: 2012-02-22T11:26:24Z @@ -117723,9 +117158,9 @@ synonym: "upregulation of execution phase of apoptosis" EXACT [GOC:TermGenie] is_a: GO:0043065 ! positive regulation of apoptotic process is_a: GO:1900117 ! regulation of execution phase of apoptosis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0097194 ! execution phase of apoptosis -relationship: positively_regulates GO:0006915 ! apoptotic process -relationship: positively_regulates GO:0097194 ! execution phase of apoptosis +intersection_of: RO:0002213 GO:0097194 ! positively regulates execution phase of apoptosis +relationship: RO:0002213 GO:0006915 ! positively regulates apoptotic process +relationship: RO:0002213 GO:0097194 ! positively regulates execution phase of apoptosis created_by: pr creation_date: 2012-02-22T11:26:27Z @@ -117738,8 +117173,8 @@ subset: gocheck_do_not_annotate synonym: "regulation of receptor ligand" NARROW [GOC:TermGenie] is_a: GO:0043393 ! regulation of protein binding intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0005102 ! signaling receptor binding -relationship: regulates GO:0005102 ! signaling receptor binding +intersection_of: RO:0002211 GO:0005102 ! regulates (processual) signaling receptor binding +relationship: RO:0002211 GO:0005102 ! regulates (processual) signaling receptor binding created_by: bf creation_date: 2012-02-22T11:40:53Z @@ -117758,8 +117193,8 @@ synonym: "inhibition of receptor ligand" NARROW [GOC:TermGenie] is_a: GO:0032091 ! negative regulation of protein binding is_a: GO:1900120 ! regulation of receptor binding intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0005102 ! signaling receptor binding -relationship: negatively_regulates GO:0005102 ! signaling receptor binding +intersection_of: RO:0002212 GO:0005102 ! negatively regulates signaling receptor binding +relationship: RO:0002212 GO:0005102 ! negatively regulates signaling receptor binding created_by: bf creation_date: 2012-02-22T11:40:57Z @@ -117775,8 +117210,8 @@ synonym: "upregulation of receptor binding" EXACT [GOC:TermGenie] is_a: GO:0032092 ! positive regulation of protein binding is_a: GO:1900120 ! regulation of receptor binding intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0005102 ! signaling receptor binding -relationship: positively_regulates GO:0005102 ! signaling receptor binding +intersection_of: RO:0002213 GO:0005102 ! positively regulates signaling receptor binding +relationship: RO:0002213 GO:0005102 ! positively regulates signaling receptor binding created_by: bf creation_date: 2012-02-22T11:41:00Z @@ -117791,8 +117226,8 @@ synonym: "regulation of hyaluronan formation" EXACT [GOC:TermGenie] synonym: "regulation of hyaluronan synthesis" EXACT [GOC:TermGenie] is_a: GO:0032885 ! regulation of polysaccharide biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030213 ! hyaluronan biosynthetic process -relationship: regulates GO:0030213 ! hyaluronan biosynthetic process +intersection_of: RO:0002211 GO:0030213 ! regulates (processual) hyaluronan biosynthetic process +relationship: RO:0002211 GO:0030213 ! regulates (processual) hyaluronan biosynthetic process created_by: yaf creation_date: 2012-02-23T01:09:21Z @@ -117829,8 +117264,8 @@ is_a: GO:0010558 ! negative regulation of macromolecule biosynthetic process is_a: GO:0045912 ! negative regulation of carbohydrate metabolic process is_a: GO:1900125 ! regulation of hyaluronan biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030213 ! hyaluronan biosynthetic process -relationship: negatively_regulates GO:0030213 ! hyaluronan biosynthetic process +intersection_of: RO:0002212 GO:0030213 ! negatively regulates hyaluronan biosynthetic process +relationship: RO:0002212 GO:0030213 ! negatively regulates hyaluronan biosynthetic process created_by: yaf creation_date: 2012-02-23T01:09:29Z @@ -117867,8 +117302,8 @@ is_a: GO:0010557 ! positive regulation of macromolecule biosynthetic process is_a: GO:0045913 ! positive regulation of carbohydrate metabolic process is_a: GO:1900125 ! regulation of hyaluronan biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030213 ! hyaluronan biosynthetic process -relationship: positively_regulates GO:0030213 ! hyaluronan biosynthetic process +intersection_of: RO:0002213 GO:0030213 ! positively regulates hyaluronan biosynthetic process +relationship: RO:0002213 GO:0030213 ! positively regulates hyaluronan biosynthetic process created_by: yaf creation_date: 2012-02-23T01:09:33Z @@ -117880,8 +117315,8 @@ def: "Any process that modulates the frequency, rate or extent of lipid binding. subset: gocheck_do_not_annotate is_a: GO:0051098 ! regulation of binding intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008289 ! lipid binding -relationship: regulates GO:0008289 ! lipid binding +intersection_of: RO:0002211 GO:0008289 ! regulates (processual) lipid binding +relationship: RO:0002211 GO:0008289 ! regulates (processual) lipid binding created_by: pm creation_date: 2012-02-23T04:05:03Z @@ -117898,8 +117333,8 @@ synonym: "inhibition of lipid binding" NARROW [GOC:TermGenie] is_a: GO:0051100 ! negative regulation of binding is_a: GO:1900130 ! regulation of lipid binding intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008289 ! lipid binding -relationship: negatively_regulates GO:0008289 ! lipid binding +intersection_of: RO:0002212 GO:0008289 ! negatively regulates lipid binding +relationship: RO:0002212 GO:0008289 ! negatively regulates lipid binding created_by: pm creation_date: 2012-02-23T04:05:07Z @@ -117916,8 +117351,8 @@ synonym: "upregulation of lipid binding" EXACT [GOC:TermGenie] is_a: GO:0051099 ! positive regulation of binding is_a: GO:1900130 ! regulation of lipid binding intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008289 ! lipid binding -relationship: positively_regulates GO:0008289 ! lipid binding +intersection_of: RO:0002213 GO:0008289 ! positively regulates lipid binding +relationship: RO:0002213 GO:0008289 ! positively regulates lipid binding created_by: pm creation_date: 2012-02-23T04:05:11Z @@ -117931,10 +117366,10 @@ is_a: GO:0044060 ! regulation of endocrine process is_a: GO:0050708 ! regulation of protein secretion is_a: GO:0098801 ! regulation of renal system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002001 ! renin secretion into blood stream -relationship: regulates GO:0002001 ! renin secretion into blood stream -relationship: regulates GO:0003014 ! renal system process -relationship: regulates GO:0050886 ! endocrine process +intersection_of: RO:0002211 GO:0002001 ! regulates (processual) renin secretion into blood stream +relationship: RO:0002211 GO:0002001 ! regulates (processual) renin secretion into blood stream +relationship: RO:0002211 GO:0003014 ! regulates (processual) renal system process +relationship: RO:0002211 GO:0050886 ! regulates (processual) endocrine process created_by: rph creation_date: 2012-02-27T10:32:01Z @@ -117955,8 +117390,8 @@ synonym: "negative regulation of renin release into blood stream" EXACT [GOC:Ter is_a: GO:0050709 ! negative regulation of protein secretion is_a: GO:1900133 ! regulation of renin secretion into blood stream intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002001 ! renin secretion into blood stream -relationship: negatively_regulates GO:0002001 ! renin secretion into blood stream +intersection_of: RO:0002212 GO:0002001 ! negatively regulates renin secretion into blood stream +relationship: RO:0002212 GO:0002001 ! negatively regulates renin secretion into blood stream created_by: rph creation_date: 2012-02-27T10:32:05Z @@ -117977,8 +117412,8 @@ synonym: "upregulation of renin secretion into blood stream" EXACT [GOC:TermGeni is_a: GO:0050714 ! positive regulation of protein secretion is_a: GO:1900133 ! regulation of renin secretion into blood stream intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002001 ! renin secretion into blood stream -relationship: positively_regulates GO:0002001 ! renin secretion into blood stream +intersection_of: RO:0002213 GO:0002001 ! positively regulates renin secretion into blood stream +relationship: RO:0002213 GO:0002001 ! positively regulates renin secretion into blood stream created_by: rph creation_date: 2012-02-27T10:32:08Z @@ -117990,8 +117425,8 @@ def: "Any process that modulates the frequency, rate or extent of oligodendrocyt synonym: "regulation of oligodendrocyte apoptosis" NARROW [GOC:TermGenie] is_a: GO:0034350 ! regulation of glial cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0097252 ! oligodendrocyte apoptotic process -relationship: regulates GO:0097252 ! oligodendrocyte apoptotic process +intersection_of: RO:0002211 GO:0097252 ! regulates (processual) oligodendrocyte apoptotic process +relationship: RO:0002211 GO:0097252 ! regulates (processual) oligodendrocyte apoptotic process created_by: yaf creation_date: 2012-03-06T10:22:45Z @@ -118012,8 +117447,8 @@ synonym: "negative regulation of oligodendrocyte apoptosis" NARROW [GOC:TermGeni is_a: GO:0034351 ! negative regulation of glial cell apoptotic process is_a: GO:1900141 ! regulation of oligodendrocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0097252 ! oligodendrocyte apoptotic process -relationship: negatively_regulates GO:0097252 ! oligodendrocyte apoptotic process +intersection_of: RO:0002212 GO:0097252 ! negatively regulates oligodendrocyte apoptotic process +relationship: RO:0002212 GO:0097252 ! negatively regulates oligodendrocyte apoptotic process created_by: yaf creation_date: 2012-03-06T10:22:50Z @@ -118034,8 +117469,8 @@ synonym: "upregulation of oligodendrocyte apoptotic process" EXACT [GOC:TermGeni is_a: GO:0034352 ! positive regulation of glial cell apoptotic process is_a: GO:1900141 ! regulation of oligodendrocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0097252 ! oligodendrocyte apoptotic process -relationship: positively_regulates GO:0097252 ! oligodendrocyte apoptotic process +intersection_of: RO:0002213 GO:0097252 ! positively regulates oligodendrocyte apoptotic process +relationship: RO:0002213 GO:0097252 ! positively regulates oligodendrocyte apoptotic process created_by: yaf creation_date: 2012-03-06T10:22:54Z @@ -118046,8 +117481,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of Schwann cell migration." [GOC:sjw, GOC:TermGenie] is_a: GO:1903975 ! regulation of glial cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0036135 ! Schwann cell migration -relationship: regulates GO:0036135 ! Schwann cell migration +intersection_of: RO:0002211 GO:0036135 ! regulates (processual) Schwann cell migration +relationship: RO:0002211 GO:0036135 ! regulates (processual) Schwann cell migration created_by: bf creation_date: 2012-03-06T04:14:50Z @@ -118063,8 +117498,8 @@ synonym: "inhibition of Schwann cell migration" NARROW [GOC:TermGenie] is_a: GO:1900147 ! regulation of Schwann cell migration is_a: GO:1903976 ! negative regulation of glial cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0036135 ! Schwann cell migration -relationship: negatively_regulates GO:0036135 ! Schwann cell migration +intersection_of: RO:0002212 GO:0036135 ! negatively regulates Schwann cell migration +relationship: RO:0002212 GO:0036135 ! negatively regulates Schwann cell migration created_by: bf creation_date: 2012-03-06T04:14:55Z @@ -118080,8 +117515,8 @@ synonym: "upregulation of Schwann cell migration" EXACT [GOC:TermGenie] is_a: GO:1900147 ! regulation of Schwann cell migration is_a: GO:1903977 ! positive regulation of glial cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0036135 ! Schwann cell migration -relationship: positively_regulates GO:0036135 ! Schwann cell migration +intersection_of: RO:0002213 GO:0036135 ! positively regulates Schwann cell migration +relationship: RO:0002213 GO:0036135 ! positively regulates Schwann cell migration created_by: bf creation_date: 2012-03-06T04:14:58Z @@ -118103,8 +117538,8 @@ is_a: GO:0002831 ! regulation of response to biotic stimulus is_a: GO:0031347 ! regulation of defense response is_a: GO:0032101 ! regulation of response to external stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0050832 ! defense response to fungus -relationship: regulates GO:0050832 ! defense response to fungus +intersection_of: RO:0002211 GO:0050832 ! regulates (processual) defense response to fungus +relationship: RO:0002211 GO:0050832 ! regulates (processual) defense response to fungus created_by: dhl creation_date: 2012-03-06T10:00:16Z @@ -118120,8 +117555,8 @@ synonym: "regulation of skeletal trabecula formation" EXACT [GOC:TermGenie] synonym: "regulation of skeletal trabeculation" EXACT [GOC:TermGenie] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060346 ! bone trabecula formation -relationship: regulates GO:0060346 ! bone trabecula formation +intersection_of: RO:0002211 GO:0060346 ! regulates (processual) bone trabecula formation +relationship: RO:0002211 GO:0060346 ! regulates (processual) bone trabecula formation created_by: vk creation_date: 2012-03-07T01:47:03Z @@ -118162,8 +117597,8 @@ synonym: "negative regulation of skeletal trabeculation" EXACT [GOC:TermGenie] is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:1900154 ! regulation of bone trabecula formation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060346 ! bone trabecula formation -relationship: negatively_regulates GO:0060346 ! bone trabecula formation +intersection_of: RO:0002212 GO:0060346 ! negatively regulates bone trabecula formation +relationship: RO:0002212 GO:0060346 ! negatively regulates bone trabecula formation created_by: vk creation_date: 2012-03-07T01:47:07Z @@ -118204,8 +117639,8 @@ synonym: "upregulation of skeletal trabeculation" EXACT [GOC:TermGenie] is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:1900154 ! regulation of bone trabecula formation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060346 ! bone trabecula formation -relationship: positively_regulates GO:0060346 ! bone trabecula formation +intersection_of: RO:0002213 GO:0060346 ! positively regulates bone trabecula formation +relationship: RO:0002213 GO:0060346 ! positively regulates bone trabecula formation created_by: vk creation_date: 2012-03-07T01:47:10Z @@ -118216,8 +117651,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of bone mineralization involved in bone maturation." [GOC:BHF, GOC:TermGenie] is_a: GO:0030500 ! regulation of bone mineralization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035630 ! bone mineralization involved in bone maturation -relationship: regulates GO:0035630 ! bone mineralization involved in bone maturation +intersection_of: RO:0002211 GO:0035630 ! regulates (processual) bone mineralization involved in bone maturation +relationship: RO:0002211 GO:0035630 ! regulates (processual) bone mineralization involved in bone maturation created_by: vk creation_date: 2012-03-07T08:55:07Z @@ -118233,8 +117668,8 @@ synonym: "inhibition of bone mineralization involved in bone maturation" NARROW is_a: GO:0030502 ! negative regulation of bone mineralization is_a: GO:1900157 ! regulation of bone mineralization involved in bone maturation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035630 ! bone mineralization involved in bone maturation -relationship: negatively_regulates GO:0035630 ! bone mineralization involved in bone maturation +intersection_of: RO:0002212 GO:0035630 ! negatively regulates bone mineralization involved in bone maturation +relationship: RO:0002212 GO:0035630 ! negatively regulates bone mineralization involved in bone maturation created_by: vk creation_date: 2012-03-07T08:55:12Z @@ -118250,68 +117685,11 @@ synonym: "upregulation of bone mineralization involved in bone maturation" EXACT is_a: GO:0030501 ! positive regulation of bone mineralization is_a: GO:1900157 ! regulation of bone mineralization involved in bone maturation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035630 ! bone mineralization involved in bone maturation -relationship: positively_regulates GO:0035630 ! bone mineralization involved in bone maturation +intersection_of: RO:0002213 GO:0035630 ! positively regulates bone mineralization involved in bone maturation +relationship: RO:0002213 GO:0035630 ! positively regulates bone mineralization involved in bone maturation created_by: vk creation_date: 2012-03-07T08:55:16Z -[Term] -id: GO:1900169 -name: regulation of glucocorticoid mediated signaling pathway -namespace: biological_process -def: "Any process that modulates the frequency, rate or extent of glucocorticoid mediated signaling pathway." [GOC:TermGenie] -synonym: "regulation of glucocorticoid mediated signalling" EXACT [GOC:TermGenie] -is_a: GO:0009966 ! regulation of signal transduction -intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0043402 ! glucocorticoid mediated signaling pathway -relationship: regulates GO:0043402 ! glucocorticoid mediated signaling pathway -created_by: hjd -creation_date: 2012-03-08T08:33:16Z - -[Term] -id: GO:1900170 -name: negative regulation of glucocorticoid mediated signaling pathway -namespace: biological_process -def: "Any process that stops, prevents or reduces the frequency, rate or extent of glucocorticoid mediated signaling pathway." [GOC:TermGenie] -synonym: "down regulation of glucocorticoid mediated signaling pathway" EXACT [GOC:TermGenie] -synonym: "down regulation of glucocorticoid mediated signalling" EXACT [GOC:TermGenie] -synonym: "down-regulation of glucocorticoid mediated signaling pathway" EXACT [GOC:TermGenie] -synonym: "down-regulation of glucocorticoid mediated signalling" EXACT [GOC:TermGenie] -synonym: "downregulation of glucocorticoid mediated signaling pathway" EXACT [GOC:TermGenie] -synonym: "downregulation of glucocorticoid mediated signalling" EXACT [GOC:TermGenie] -synonym: "inhibition of glucocorticoid mediated signaling pathway" NARROW [GOC:TermGenie] -synonym: "inhibition of glucocorticoid mediated signalling" NARROW [GOC:TermGenie] -synonym: "negative regulation of glucocorticoid mediated signalling" EXACT [GOC:TermGenie] -is_a: GO:0009968 ! negative regulation of signal transduction -is_a: GO:1900169 ! regulation of glucocorticoid mediated signaling pathway -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0043402 ! glucocorticoid mediated signaling pathway -relationship: negatively_regulates GO:0043402 ! glucocorticoid mediated signaling pathway -created_by: hjd -creation_date: 2012-03-08T08:33:20Z - -[Term] -id: GO:1900171 -name: positive regulation of glucocorticoid mediated signaling pathway -namespace: biological_process -def: "Any process that activates or increases the frequency, rate or extent of glucocorticoid mediated signaling pathway." [GOC:TermGenie] -synonym: "activation of glucocorticoid mediated signaling pathway" NARROW [GOC:TermGenie] -synonym: "activation of glucocorticoid mediated signalling" NARROW [GOC:TermGenie] -synonym: "positive regulation of glucocorticoid mediated signalling" EXACT [GOC:TermGenie] -synonym: "up regulation of glucocorticoid mediated signaling pathway" EXACT [GOC:TermGenie] -synonym: "up regulation of glucocorticoid mediated signalling" EXACT [GOC:TermGenie] -synonym: "up-regulation of glucocorticoid mediated signaling pathway" EXACT [GOC:TermGenie] -synonym: "up-regulation of glucocorticoid mediated signalling" EXACT [GOC:TermGenie] -synonym: "upregulation of glucocorticoid mediated signaling pathway" EXACT [GOC:TermGenie] -synonym: "upregulation of glucocorticoid mediated signalling" EXACT [GOC:TermGenie] -is_a: GO:0009967 ! positive regulation of signal transduction -is_a: GO:1900169 ! regulation of glucocorticoid mediated signaling pathway -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0043402 ! glucocorticoid mediated signaling pathway -relationship: positively_regulates GO:0043402 ! glucocorticoid mediated signaling pathway -created_by: hjd -creation_date: 2012-03-08T08:33:23Z - [Term] id: GO:1900180 name: regulation of protein localization to nucleus @@ -118322,8 +117700,8 @@ synonym: "regulation of protein localization in cell nucleus" EXACT [GOC:TermGen synonym: "regulation of protein localization in nucleus" EXACT [GOC:TermGenie] is_a: GO:0032880 ! regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0034504 ! protein localization to nucleus -relationship: regulates GO:0034504 ! protein localization to nucleus +intersection_of: RO:0002211 GO:0034504 ! regulates (processual) protein localization to nucleus +relationship: RO:0002211 GO:0034504 ! regulates (processual) protein localization to nucleus created_by: bf creation_date: 2012-03-12T01:23:44Z @@ -118354,8 +117732,8 @@ synonym: "negative regulation of protein localization in nucleus" EXACT [GOC:Ter is_a: GO:1900180 ! regulation of protein localization to nucleus is_a: GO:1903828 ! negative regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0034504 ! protein localization to nucleus -relationship: negatively_regulates GO:0034504 ! protein localization to nucleus +intersection_of: RO:0002212 GO:0034504 ! negatively regulates protein localization to nucleus +relationship: RO:0002212 GO:0034504 ! negatively regulates protein localization to nucleus created_by: bf creation_date: 2012-03-12T01:23:48Z @@ -118386,8 +117764,8 @@ synonym: "upregulation of protein localization to nucleus" EXACT [GOC:TermGenie] is_a: GO:1900180 ! regulation of protein localization to nucleus is_a: GO:1903829 ! positive regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0034504 ! protein localization to nucleus -relationship: positively_regulates GO:0034504 ! protein localization to nucleus +intersection_of: RO:0002213 GO:0034504 ! positively regulates protein localization to nucleus +relationship: RO:0002213 GO:0034504 ! positively regulates protein localization to nucleus created_by: bf creation_date: 2012-03-12T01:23:52Z @@ -118399,8 +117777,8 @@ def: "Any process that modulates the frequency, rate or extent of oocyte maturat is_a: GO:1903429 ! regulation of cell maturation is_a: GO:2000241 ! regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001556 ! oocyte maturation -relationship: regulates GO:0001556 ! oocyte maturation +intersection_of: RO:0002211 GO:0001556 ! regulates (processual) oocyte maturation +relationship: RO:0002211 GO:0001556 ! regulates (processual) oocyte maturation created_by: kmv creation_date: 2012-03-19T09:41:18Z @@ -118417,8 +117795,8 @@ is_a: GO:1900193 ! regulation of oocyte maturation is_a: GO:1903430 ! negative regulation of cell maturation is_a: GO:2000242 ! negative regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001556 ! oocyte maturation -relationship: negatively_regulates GO:0001556 ! oocyte maturation +intersection_of: RO:0002212 GO:0001556 ! negatively regulates oocyte maturation +relationship: RO:0002212 GO:0001556 ! negatively regulates oocyte maturation created_by: kmv creation_date: 2012-03-19T09:41:27Z @@ -118435,8 +117813,8 @@ is_a: GO:1900193 ! regulation of oocyte maturation is_a: GO:1903431 ! positive regulation of cell maturation is_a: GO:2000243 ! positive regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001556 ! oocyte maturation -relationship: positively_regulates GO:0001556 ! oocyte maturation +intersection_of: RO:0002213 GO:0001556 ! positively regulates oocyte maturation +relationship: RO:0002213 GO:0001556 ! positively regulates oocyte maturation created_by: kmv creation_date: 2012-03-19T09:41:35Z @@ -118501,8 +117879,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of pronephric nephron tubule development." [GOC:TermGenie] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0039020 ! pronephric nephron tubule development -relationship: regulates GO:0039020 ! pronephric nephron tubule development +intersection_of: RO:0002211 GO:0039020 ! regulates (processual) pronephric nephron tubule development +relationship: RO:0002211 GO:0039020 ! regulates (processual) pronephric nephron tubule development created_by: bf creation_date: 2012-03-22T09:23:13Z @@ -118518,8 +117896,8 @@ synonym: "inhibition of pronephric nephron tubule development" NARROW [GOC:TermG is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:1900206 ! regulation of pronephric nephron tubule development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0039020 ! pronephric nephron tubule development -relationship: negatively_regulates GO:0039020 ! pronephric nephron tubule development +intersection_of: RO:0002212 GO:0039020 ! negatively regulates pronephric nephron tubule development +relationship: RO:0002212 GO:0039020 ! negatively regulates pronephric nephron tubule development created_by: bf creation_date: 2012-03-22T09:23:23Z @@ -118532,8 +117910,8 @@ synonym: "regulation of mesenchymal cell apoptosis involved in metanephros devel is_a: GO:1904748 ! regulation of apoptotic process involved in development is_a: GO:2001053 ! regulation of mesenchymal cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1900200 ! mesenchymal cell apoptotic process involved in metanephros development -relationship: regulates GO:1900200 ! mesenchymal cell apoptotic process involved in metanephros development +intersection_of: RO:0002211 GO:1900200 ! regulates (processual) mesenchymal cell apoptotic process involved in metanephros development +relationship: RO:0002211 GO:1900200 ! regulates (processual) mesenchymal cell apoptotic process involved in metanephros development created_by: yaf creation_date: 2012-03-22T10:52:50Z @@ -118551,8 +117929,8 @@ is_a: GO:1900211 ! regulation of mesenchymal cell apoptotic process involved in is_a: GO:1904746 ! negative regulation of apoptotic process involved in development is_a: GO:2001054 ! negative regulation of mesenchymal cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1900200 ! mesenchymal cell apoptotic process involved in metanephros development -relationship: negatively_regulates GO:1900200 ! mesenchymal cell apoptotic process involved in metanephros development +intersection_of: RO:0002212 GO:1900200 ! negatively regulates mesenchymal cell apoptotic process involved in metanephros development +relationship: RO:0002212 GO:1900200 ! negatively regulates mesenchymal cell apoptotic process involved in metanephros development created_by: yaf creation_date: 2012-03-22T10:53:00Z @@ -118570,8 +117948,8 @@ is_a: GO:1900211 ! regulation of mesenchymal cell apoptotic process involved in is_a: GO:1904747 ! positive regulation of apoptotic process involved in development is_a: GO:2001055 ! positive regulation of mesenchymal cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1900200 ! mesenchymal cell apoptotic process involved in metanephros development -relationship: positively_regulates GO:1900200 ! mesenchymal cell apoptotic process involved in metanephros development +intersection_of: RO:0002213 GO:1900200 ! positively regulates mesenchymal cell apoptotic process involved in metanephros development +relationship: RO:0002213 GO:1900200 ! positively regulates mesenchymal cell apoptotic process involved in metanephros development created_by: yaf creation_date: 2012-03-22T10:53:09Z @@ -118590,8 +117968,8 @@ synonym: "regulation of signaling (initiator) caspase activity of metanephric co synonym: "regulation of type I programmed cell death of metanephric collecting duct development" NARROW [GOC:TermGenie] is_a: GO:1904748 ! regulation of apoptotic process involved in development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1900204 ! apoptotic process involved in metanephric collecting duct development -relationship: regulates GO:1900204 ! apoptotic process involved in metanephric collecting duct development +intersection_of: RO:0002211 GO:1900204 ! regulates (processual) apoptotic process involved in metanephric collecting duct development +relationship: RO:0002211 GO:1900204 ! regulates (processual) apoptotic process involved in metanephric collecting duct development created_by: yaf creation_date: 2012-03-22T10:53:21Z @@ -118647,8 +118025,8 @@ synonym: "negative regulation of type I programmed cell death of metanephric col is_a: GO:1900214 ! regulation of apoptotic process involved in metanephric collecting duct development is_a: GO:1904746 ! negative regulation of apoptotic process involved in development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1900204 ! apoptotic process involved in metanephric collecting duct development -relationship: negatively_regulates GO:1900204 ! apoptotic process involved in metanephric collecting duct development +intersection_of: RO:0002212 GO:1900204 ! negatively regulates apoptotic process involved in metanephric collecting duct development +relationship: RO:0002212 GO:1900204 ! negatively regulates apoptotic process involved in metanephric collecting duct development created_by: yaf creation_date: 2012-03-22T10:53:31Z @@ -118704,8 +118082,8 @@ synonym: "upregulation of type I programmed cell death of metanephric collecting is_a: GO:1900214 ! regulation of apoptotic process involved in metanephric collecting duct development is_a: GO:1904747 ! positive regulation of apoptotic process involved in development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1900204 ! apoptotic process involved in metanephric collecting duct development -relationship: positively_regulates GO:1900204 ! apoptotic process involved in metanephric collecting duct development +intersection_of: RO:0002213 GO:1900204 ! positively regulates apoptotic process involved in metanephric collecting duct development +relationship: RO:0002213 GO:1900204 ! positively regulates apoptotic process involved in metanephric collecting duct development created_by: yaf creation_date: 2012-03-22T10:53:39Z @@ -118724,8 +118102,8 @@ synonym: "regulation of signaling (initiator) caspase activity of metanephric ne synonym: "regulation of type I programmed cell death of metanephric nephron tubule development" NARROW [GOC:TermGenie] is_a: GO:1904748 ! regulation of apoptotic process involved in development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1900205 ! apoptotic process involved in metanephric nephron tubule development -relationship: regulates GO:1900205 ! apoptotic process involved in metanephric nephron tubule development +intersection_of: RO:0002211 GO:1900205 ! regulates (processual) apoptotic process involved in metanephric nephron tubule development +relationship: RO:0002211 GO:1900205 ! regulates (processual) apoptotic process involved in metanephric nephron tubule development created_by: yaf creation_date: 2012-03-22T10:53:51Z @@ -118781,8 +118159,8 @@ synonym: "negative regulation of type I programmed cell death of metanephric nep is_a: GO:1900217 ! regulation of apoptotic process involved in metanephric nephron tubule development is_a: GO:1904746 ! negative regulation of apoptotic process involved in development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1900205 ! apoptotic process involved in metanephric nephron tubule development -relationship: negatively_regulates GO:1900205 ! apoptotic process involved in metanephric nephron tubule development +intersection_of: RO:0002212 GO:1900205 ! negatively regulates apoptotic process involved in metanephric nephron tubule development +relationship: RO:0002212 GO:1900205 ! negatively regulates apoptotic process involved in metanephric nephron tubule development created_by: yaf creation_date: 2012-03-22T10:54:01Z @@ -118838,8 +118216,8 @@ synonym: "upregulation of type I programmed cell death of metanephric nephron tu is_a: GO:1900217 ! regulation of apoptotic process involved in metanephric nephron tubule development is_a: GO:1904747 ! positive regulation of apoptotic process involved in development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1900205 ! apoptotic process involved in metanephric nephron tubule development -relationship: positively_regulates GO:1900205 ! apoptotic process involved in metanephric nephron tubule development +intersection_of: RO:0002213 GO:1900205 ! positively regulates apoptotic process involved in metanephric nephron tubule development +relationship: RO:0002213 GO:1900205 ! positively regulates apoptotic process involved in metanephric nephron tubule development created_by: yaf creation_date: 2012-03-22T10:54:09Z @@ -118850,8 +118228,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cytoplasmic translational elongation." [GOC:TermGenie] is_a: GO:0006448 ! regulation of translational elongation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002182 ! cytoplasmic translational elongation -relationship: regulates GO:0002182 ! cytoplasmic translational elongation +intersection_of: RO:0002211 GO:0002182 ! regulates (processual) cytoplasmic translational elongation +relationship: RO:0002211 GO:0002182 ! regulates (processual) cytoplasmic translational elongation created_by: vw creation_date: 2012-04-03T05:07:02Z @@ -118868,9 +118246,9 @@ is_a: GO:0045900 ! negative regulation of translational elongation is_a: GO:1900247 ! regulation of cytoplasmic translational elongation is_a: GO:2000766 ! negative regulation of cytoplasmic translation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002182 ! cytoplasmic translational elongation -relationship: negatively_regulates GO:0002181 ! cytoplasmic translation -relationship: negatively_regulates GO:0002182 ! cytoplasmic translational elongation +intersection_of: RO:0002212 GO:0002182 ! negatively regulates cytoplasmic translational elongation +relationship: RO:0002212 GO:0002181 ! negatively regulates cytoplasmic translation +relationship: RO:0002212 GO:0002182 ! negatively regulates cytoplasmic translational elongation created_by: vw creation_date: 2012-04-03T05:07:14Z @@ -118886,8 +118264,8 @@ synonym: "upregulation of cytoplasmic translational elongation" EXACT [GOC:TermG is_a: GO:0045901 ! positive regulation of translational elongation is_a: GO:1900247 ! regulation of cytoplasmic translational elongation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002182 ! cytoplasmic translational elongation -relationship: positively_regulates GO:0002182 ! cytoplasmic translational elongation +intersection_of: RO:0002213 GO:0002182 ! positively regulates cytoplasmic translational elongation +relationship: RO:0002213 GO:0002182 ! positively regulates cytoplasmic translational elongation created_by: vw creation_date: 2012-04-03T05:07:24Z @@ -118909,8 +118287,8 @@ synonym: "susceptibility to insect" RELATED [] is_a: GO:0031348 ! negative regulation of defense response is_a: GO:2000068 ! regulation of defense response to insect intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002213 ! defense response to insect -relationship: negatively_regulates GO:0002213 ! defense response to insect +intersection_of: RO:0002212 GO:0002213 ! negatively regulates defense response to insect +relationship: RO:0002212 GO:0002213 ! negatively regulates defense response to insect created_by: dhl creation_date: 2012-04-12T04:44:00Z @@ -118931,8 +118309,8 @@ synonym: "upregulation of physiological defense response to insect" EXACT [GOC:T is_a: GO:0031349 ! positive regulation of defense response is_a: GO:2000068 ! regulation of defense response to insect intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002213 ! defense response to insect -relationship: positively_regulates GO:0002213 ! defense response to insect +intersection_of: RO:0002213 GO:0002213 ! positively regulates defense response to insect +relationship: RO:0002213 GO:0002213 ! positively regulates defense response to insect created_by: dhl creation_date: 2012-04-12T04:44:10Z @@ -118948,8 +118326,8 @@ synonym: "regulation of purine nucleotide synthesis" EXACT [GOC:TermGenie] is_a: GO:0030808 ! regulation of nucleotide biosynthetic process is_a: GO:1900542 ! regulation of purine nucleotide metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006164 ! purine nucleotide biosynthetic process -relationship: regulates GO:0006164 ! purine nucleotide biosynthetic process +intersection_of: RO:0002211 GO:0006164 ! regulates (processual) purine nucleotide biosynthetic process +relationship: RO:0002211 GO:0006164 ! regulates (processual) purine nucleotide biosynthetic process created_by: krc creation_date: 2012-04-17T12:32:07Z @@ -118986,8 +118364,8 @@ is_a: GO:0030809 ! negative regulation of nucleotide biosynthetic process is_a: GO:1900371 ! regulation of purine nucleotide biosynthetic process is_a: GO:1900543 ! negative regulation of purine nucleotide metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006164 ! purine nucleotide biosynthetic process -relationship: negatively_regulates GO:0006164 ! purine nucleotide biosynthetic process +intersection_of: RO:0002212 GO:0006164 ! negatively regulates purine nucleotide biosynthetic process +relationship: RO:0002212 GO:0006164 ! negatively regulates purine nucleotide biosynthetic process created_by: krc creation_date: 2012-04-17T12:32:27Z @@ -119024,8 +118402,8 @@ is_a: GO:0030810 ! positive regulation of nucleotide biosynthetic process is_a: GO:1900371 ! regulation of purine nucleotide biosynthetic process is_a: GO:1900544 ! positive regulation of purine nucleotide metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006164 ! purine nucleotide biosynthetic process -relationship: positively_regulates GO:0006164 ! purine nucleotide biosynthetic process +intersection_of: RO:0002213 GO:0006164 ! positively regulates purine nucleotide biosynthetic process +relationship: RO:0002213 GO:0006164 ! positively regulates purine nucleotide biosynthetic process created_by: krc creation_date: 2012-04-17T12:32:37Z @@ -119038,8 +118416,8 @@ synonym: "regulation of secondary metabolite biosynthesis" EXACT [GOC:TermGenie] is_a: GO:0009889 ! regulation of biosynthetic process is_a: GO:0043455 ! regulation of secondary metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0044550 ! secondary metabolite biosynthetic process -relationship: regulates GO:0044550 ! secondary metabolite biosynthetic process +intersection_of: RO:0002211 GO:0044550 ! regulates (processual) secondary metabolite biosynthetic process +relationship: RO:0002211 GO:0044550 ! regulates (processual) secondary metabolite biosynthetic process created_by: di creation_date: 2012-04-17T01:55:23Z @@ -119060,8 +118438,8 @@ synonym: "negative regulation of secondary metabolite biosynthesis" EXACT [GOC:T is_a: GO:0009890 ! negative regulation of biosynthetic process is_a: GO:1900376 ! regulation of secondary metabolite biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0044550 ! secondary metabolite biosynthetic process -relationship: negatively_regulates GO:0044550 ! secondary metabolite biosynthetic process +intersection_of: RO:0002212 GO:0044550 ! negatively regulates secondary metabolite biosynthetic process +relationship: RO:0002212 GO:0044550 ! negatively regulates secondary metabolite biosynthetic process created_by: di creation_date: 2012-04-17T01:55:32Z @@ -119082,57 +118460,59 @@ synonym: "upregulation of secondary metabolite biosynthetic process" EXACT [GOC: is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:1900376 ! regulation of secondary metabolite biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0044550 ! secondary metabolite biosynthetic process -relationship: positively_regulates GO:0044550 ! secondary metabolite biosynthetic process +intersection_of: RO:0002213 GO:0044550 ! positively regulates secondary metabolite biosynthetic process +relationship: RO:0002213 GO:0044550 ! positively regulates secondary metabolite biosynthetic process created_by: di creation_date: 2012-04-17T01:55:41Z [Term] id: GO:1900419 -name: regulation of cellular alcohol catabolic process +name: regulation of alcohol catabolic process namespace: biological_process -def: "Any process that modulates the frequency, rate or extent of cellular alcohol catabolic process." [GOC:TermGenie] +def: "Any process that modulates the frequency, rate or extent of alcohol catabolic process within a cell." [GOC:TermGenie] is_a: GO:0009894 ! regulation of catabolic process is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0046164 ! alcohol catabolic process -relationship: regulates GO:0046164 ! alcohol catabolic process +intersection_of: RO:0002211 GO:0046164 ! regulates (processual) alcohol catabolic process +relationship: RO:0002211 GO:0046164 ! regulates (processual) alcohol catabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI created_by: krc creation_date: 2012-04-20T10:21:18Z [Term] id: GO:1900420 -name: negative regulation of cellular alcohol catabolic process +name: negative regulation of alcohol catabolic process namespace: biological_process -def: "Any process that stops, prevents or reduces the frequency, rate or extent of cellular alcohol catabolic process." [GOC:TermGenie] +def: "Any process that stops, prevents or reduces the frequency, rate or extent of alcohol catabolic process within a cell." [GOC:TermGenie] synonym: "down regulation of cellular alcohol catabolic process" EXACT [GOC:TermGenie] synonym: "down-regulation of cellular alcohol catabolic process" EXACT [GOC:TermGenie] synonym: "downregulation of cellular alcohol catabolic process" EXACT [GOC:TermGenie] synonym: "inhibition of cellular alcohol catabolic process" NARROW [GOC:TermGenie] is_a: GO:0009895 ! negative regulation of catabolic process is_a: GO:0062014 ! negative regulation of small molecule metabolic process -is_a: GO:1900419 ! regulation of cellular alcohol catabolic process +is_a: GO:1900419 ! regulation of alcohol catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0046164 ! alcohol catabolic process -relationship: negatively_regulates GO:0046164 ! alcohol catabolic process +intersection_of: RO:0002212 GO:0046164 ! negatively regulates alcohol catabolic process +relationship: RO:0002212 GO:0046164 ! negatively regulates alcohol catabolic process created_by: krc creation_date: 2012-04-20T10:21:28Z [Term] id: GO:1900421 -name: positive regulation of cellular alcohol catabolic process +name: positive regulation of alcohol catabolic process namespace: biological_process -def: "Any process that activates or increases the frequency, rate or extent of cellular alcohol catabolic process." [GOC:TermGenie] +def: "Any process that activates or increases the frequency, rate or extent of alcohol catabolic process within a cell." [GOC:TermGenie] synonym: "activation of cellular alcohol catabolic process" NARROW [GOC:TermGenie] synonym: "up regulation of cellular alcohol catabolic process" EXACT [GOC:TermGenie] synonym: "up-regulation of cellular alcohol catabolic process" EXACT [GOC:TermGenie] synonym: "upregulation of cellular alcohol catabolic process" EXACT [GOC:TermGenie] is_a: GO:0009896 ! positive regulation of catabolic process is_a: GO:0062013 ! positive regulation of small molecule metabolic process -is_a: GO:1900419 ! regulation of cellular alcohol catabolic process +is_a: GO:1900419 ! regulation of alcohol catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0046164 ! alcohol catabolic process -relationship: positively_regulates GO:0046164 ! alcohol catabolic process +intersection_of: RO:0002213 GO:0046164 ! positively regulates alcohol catabolic process +relationship: RO:0002213 GO:0046164 ! positively regulates alcohol catabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI created_by: krc creation_date: 2012-04-20T10:21:46Z @@ -119156,8 +118536,8 @@ is_a: GO:0002831 ! regulation of response to biotic stimulus is_a: GO:0031347 ! regulation of defense response is_a: GO:0032101 ! regulation of response to external stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042742 ! defense response to bacterium -relationship: regulates GO:0042742 ! defense response to bacterium +intersection_of: RO:0002211 GO:0042742 ! regulates (processual) defense response to bacterium +relationship: RO:0002211 GO:0042742 ! regulates (processual) defense response to bacterium created_by: dhl creation_date: 2012-04-24T10:12:43Z @@ -119204,8 +118584,8 @@ is_a: GO:0031348 ! negative regulation of defense response is_a: GO:0032102 ! negative regulation of response to external stimulus is_a: GO:1900424 ! regulation of defense response to bacterium intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042742 ! defense response to bacterium -relationship: negatively_regulates GO:0042742 ! defense response to bacterium +intersection_of: RO:0002212 GO:0042742 ! negatively regulates defense response to bacterium +relationship: RO:0002212 GO:0042742 ! negatively regulates defense response to bacterium created_by: dhl creation_date: 2012-04-24T10:12:54Z @@ -119247,8 +118627,8 @@ is_a: GO:0031349 ! positive regulation of defense response is_a: GO:0032103 ! positive regulation of response to external stimulus is_a: GO:1900424 ! regulation of defense response to bacterium intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042742 ! defense response to bacterium -relationship: positively_regulates GO:0042742 ! defense response to bacterium +intersection_of: RO:0002213 GO:0042742 ! positively regulates defense response to bacterium +relationship: RO:0002213 GO:0042742 ! positively regulates defense response to bacterium created_by: dhl creation_date: 2012-04-24T10:13:13Z @@ -119261,8 +118641,8 @@ synonym: "regulation of glutamate signaling pathway" EXACT [GOC:TermGenie] synonym: "regulation of glutamate signalling pathway" EXACT [GOC:TermGenie] is_a: GO:0009966 ! regulation of signal transduction intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007215 ! glutamate receptor signaling pathway -relationship: regulates GO:0007215 ! glutamate receptor signaling pathway +intersection_of: RO:0002211 GO:0007215 ! regulates (processual) glutamate receptor signaling pathway +relationship: RO:0002211 GO:0007215 ! regulates (processual) glutamate receptor signaling pathway created_by: rl creation_date: 2012-04-27T03:45:43Z @@ -119288,8 +118668,8 @@ synonym: "negative regulation of glutamate signalling pathway" EXACT [GOC:TermGe is_a: GO:0009968 ! negative regulation of signal transduction is_a: GO:1900449 ! regulation of glutamate receptor signaling pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007215 ! glutamate receptor signaling pathway -relationship: negatively_regulates GO:0007215 ! glutamate receptor signaling pathway +intersection_of: RO:0002212 GO:0007215 ! negatively regulates glutamate receptor signaling pathway +relationship: RO:0002212 GO:0007215 ! negatively regulates glutamate receptor signaling pathway created_by: rl creation_date: 2012-04-27T03:45:53Z @@ -119315,8 +118695,8 @@ synonym: "upregulation of glutamate signalling pathway" EXACT [GOC:TermGenie] is_a: GO:0009967 ! positive regulation of signal transduction is_a: GO:1900449 ! regulation of glutamate receptor signaling pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007215 ! glutamate receptor signaling pathway -relationship: positively_regulates GO:0007215 ! glutamate receptor signaling pathway +intersection_of: RO:0002213 GO:0007215 ! positively regulates glutamate receptor signaling pathway +relationship: RO:0002213 GO:0007215 ! positively regulates glutamate receptor signaling pathway created_by: rl creation_date: 2012-04-27T03:46:03Z @@ -119330,8 +118710,8 @@ synonym: "regulation of purine metabolism" NARROW [GOC:TermGenie] synonym: "regulation of purine nucleotide metabolism" EXACT [GOC:TermGenie] is_a: GO:0006140 ! regulation of nucleotide metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006163 ! purine nucleotide metabolic process -relationship: regulates GO:0006163 ! purine nucleotide metabolic process +intersection_of: RO:0002211 GO:0006163 ! regulates (processual) purine nucleotide metabolic process +relationship: RO:0002211 GO:0006163 ! regulates (processual) purine nucleotide metabolic process created_by: krc creation_date: 2012-05-11T05:43:15Z @@ -119362,8 +118742,8 @@ synonym: "negative regulation of purine nucleotide metabolism" EXACT [GOC:TermGe is_a: GO:0045980 ! negative regulation of nucleotide metabolic process is_a: GO:1900542 ! regulation of purine nucleotide metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006163 ! purine nucleotide metabolic process -relationship: negatively_regulates GO:0006163 ! purine nucleotide metabolic process +intersection_of: RO:0002212 GO:0006163 ! negatively regulates purine nucleotide metabolic process +relationship: RO:0002212 GO:0006163 ! negatively regulates purine nucleotide metabolic process created_by: krc creation_date: 2012-05-11T05:44:21Z @@ -119394,8 +118774,8 @@ synonym: "upregulation of purine nucleotide metabolism" EXACT [GOC:TermGenie] is_a: GO:0045981 ! positive regulation of nucleotide metabolic process is_a: GO:1900542 ! regulation of purine nucleotide metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006163 ! purine nucleotide metabolic process -relationship: positively_regulates GO:0006163 ! purine nucleotide metabolic process +intersection_of: RO:0002213 GO:0006163 ! positively regulates purine nucleotide metabolic process +relationship: RO:0002213 GO:0006163 ! positively regulates purine nucleotide metabolic process created_by: krc creation_date: 2012-05-11T05:44:43Z @@ -119409,8 +118789,8 @@ synonym: "acetyl ester metabolic process" EXACT [CHEBI:47622] synonym: "acetyl ester metabolism" EXACT [CHEBI:47622] is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:47622 ! acetate ester -relationship: has_primary_input_or_output CHEBI:47622 ! acetate ester +intersection_of: RO:0004007 CHEBI:47622 ! has primary input or output acetate ester +relationship: RO:0004007 CHEBI:47622 ! has primary input or output acetate ester created_by: bf creation_date: 2012-05-16T12:29:51Z @@ -119428,8 +118808,8 @@ synonym: "acetyl ester biosynthetic process" EXACT [CHEBI:47622] is_a: GO:0009058 ! biosynthetic process is_a: GO:1900619 ! acetate ester metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:47622 ! acetate ester -relationship: has_primary_output CHEBI:47622 ! acetate ester +intersection_of: RO:0004008 CHEBI:47622 ! has primary output acetate ester +relationship: RO:0004008 CHEBI:47622 ! has primary output acetate ester created_by: bf creation_date: 2012-05-16T12:30:12Z @@ -119441,8 +118821,8 @@ def: "The chemical reactions and pathways involving D-tyrosine." [GOC:TermGenie, synonym: "D-tyrosine metabolism" EXACT [GOC:TermGenie] is_a: GO:0046416 ! D-amino acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:58570 ! D-tyrosine zwitterion -relationship: has_primary_input_or_output CHEBI:58570 ! D-tyrosine zwitterion +intersection_of: RO:0004007 CHEBI:58570 ! has primary input or output D-tyrosine zwitterion +relationship: RO:0004007 CHEBI:58570 ! has primary input or output D-tyrosine zwitterion created_by: se creation_date: 2012-06-06T09:27:00Z @@ -119457,8 +118837,8 @@ synonym: "D-tyrosine degradation" EXACT [GOC:TermGenie] is_a: GO:0019478 ! D-amino acid catabolic process is_a: GO:1900828 ! D-tyrosine metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:58570 ! D-tyrosine zwitterion -relationship: has_primary_input CHEBI:58570 ! D-tyrosine zwitterion +intersection_of: RO:0004009 CHEBI:58570 ! has primary input D-tyrosine zwitterion +relationship: RO:0004009 CHEBI:58570 ! has primary input D-tyrosine zwitterion created_by: se creation_date: 2012-06-06T09:27:24Z @@ -119471,8 +118851,8 @@ synonym: "regulation of L-tyrosine import" BROAD [] synonym: "regulation of L-tyrosine uptake" EXACT [GOC:TermGenie] is_a: GO:0010958 ! regulation of amino acid import across plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1903808 ! L-tyrosine import across plasma membrane -relationship: regulates GO:1903808 ! L-tyrosine import across plasma membrane +intersection_of: RO:0002211 GO:1903808 ! regulates (processual) L-tyrosine import across plasma membrane +relationship: RO:0002211 GO:1903808 ! regulates (processual) L-tyrosine import across plasma membrane created_by: al creation_date: 2012-06-13T07:42:52Z @@ -119495,8 +118875,8 @@ is_a: GO:0034763 ! negative regulation of transmembrane transport is_a: GO:0051956 ! negative regulation of amino acid transport is_a: GO:1900929 ! regulation of L-tyrosine import across plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1903808 ! L-tyrosine import across plasma membrane -relationship: negatively_regulates GO:1903808 ! L-tyrosine import across plasma membrane +intersection_of: RO:0002212 GO:1903808 ! negatively regulates L-tyrosine import across plasma membrane +relationship: RO:0002212 GO:1903808 ! negatively regulates L-tyrosine import across plasma membrane created_by: al creation_date: 2012-06-13T07:43:14Z @@ -119519,8 +118899,8 @@ is_a: GO:0034764 ! positive regulation of transmembrane transport is_a: GO:0051957 ! positive regulation of amino acid transport is_a: GO:1900929 ! regulation of L-tyrosine import across plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1903808 ! L-tyrosine import across plasma membrane -relationship: positively_regulates GO:1903808 ! L-tyrosine import across plasma membrane +intersection_of: RO:0002213 GO:1903808 ! positively regulates L-tyrosine import across plasma membrane +relationship: RO:0002213 GO:1903808 ! positively regulates L-tyrosine import across plasma membrane created_by: al creation_date: 2012-06-13T07:43:21Z @@ -119535,8 +118915,8 @@ synonym: "benzene degradation" EXACT [GOC:TermGenie] is_a: GO:0018910 ! benzene metabolic process is_a: GO:0120253 ! hydrocarbon catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:16716 ! benzene -relationship: has_primary_input CHEBI:16716 ! benzene +intersection_of: RO:0004009 CHEBI:16716 ! has primary input benzene +relationship: RO:0004009 CHEBI:16716 ! has primary input benzene created_by: yaf creation_date: 2012-06-14T02:53:38Z @@ -119552,8 +118932,8 @@ synonym: "benzene synthesis" EXACT [GOC:TermGenie] is_a: GO:0018910 ! benzene metabolic process is_a: GO:0120251 ! hydrocarbon biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:16716 ! benzene -relationship: has_primary_output CHEBI:16716 ! benzene +intersection_of: RO:0004008 CHEBI:16716 ! has primary output benzene +relationship: RO:0004008 CHEBI:16716 ! has primary output benzene created_by: yaf creation_date: 2012-06-14T02:54:01Z @@ -119566,26 +118946,92 @@ synonym: "down regulation of fermentation" EXACT [GOC:TermGenie] synonym: "down-regulation of fermentation" EXACT [GOC:TermGenie] synonym: "downregulation of fermentation" EXACT [GOC:TermGenie] synonym: "inhibition of fermentation" NARROW [GOC:TermGenie] -is_a: GO:0031324 ! negative regulation of cellular metabolic process +is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0043465 ! regulation of fermentation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006113 ! fermentation -relationship: negatively_regulates GO:0006113 ! fermentation +intersection_of: RO:0002212 GO:0006113 ! negatively regulates fermentation +relationship: RO:0002212 GO:0006113 ! negatively regulates fermentation created_by: al creation_date: 2012-06-15T08:21:31Z +[Term] +id: GO:1901016 +name: regulation of potassium ion transmembrane transporter activity +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of potassium ion transmembrane transporter activity." [GOC:BHF, GOC:TermGenie] +subset: gocheck_obsoletion_candidate +synonym: "regulation of potassium transporter activity" EXACT [GOC:TermGenie] +is_a: GO:0032412 ! regulation of monoatomic ion transmembrane transporter activity +is_a: GO:1901379 ! regulation of potassium ion transmembrane transport +intersection_of: GO:0065007 ! biological regulation +intersection_of: RO:0002211 GO:0015079 ! regulates (processual) potassium ion transmembrane transporter activity +relationship: RO:0002211 GO:0015079 ! regulates (processual) potassium ion transmembrane transporter activity +relationship: RO:0002211 GO:0071805 ! regulates (processual) potassium ion transmembrane transport +created_by: rl +creation_date: 2012-06-15T01:13:49Z + +[Term] +id: GO:1901017 +name: negative regulation of potassium ion transmembrane transporter activity +namespace: biological_process +def: "Any process that stops, prevents or reduces the frequency, rate or extent of potassium ion transmembrane transporter activity." [GOC:BHF, GOC:TermGenie] +subset: gocheck_obsoletion_candidate +synonym: "down regulation of potassium ion transmembrane transporter activity" EXACT [GOC:TermGenie] +synonym: "down regulation of potassium transporter activity" EXACT [GOC:TermGenie] +synonym: "down-regulation of potassium ion transmembrane transporter activity" EXACT [GOC:TermGenie] +synonym: "down-regulation of potassium transporter activity" EXACT [GOC:TermGenie] +synonym: "downregulation of potassium ion transmembrane transporter activity" EXACT [GOC:TermGenie] +synonym: "downregulation of potassium transporter activity" EXACT [GOC:TermGenie] +synonym: "inhibition of potassium ion transmembrane transporter activity" NARROW [GOC:TermGenie] +synonym: "inhibition of potassium transporter activity" EXACT [GOC:TermGenie] +synonym: "negative regulation of potassium transporter activity" EXACT [GOC:TermGenie] +is_a: GO:0032413 ! negative regulation of ion transmembrane transporter activity +is_a: GO:1901016 ! regulation of potassium ion transmembrane transporter activity +is_a: GO:1901380 ! negative regulation of potassium ion transmembrane transport +intersection_of: GO:0065007 ! biological regulation +intersection_of: RO:0002212 GO:0015079 ! negatively regulates potassium ion transmembrane transporter activity +relationship: RO:0002212 GO:0015079 ! negatively regulates potassium ion transmembrane transporter activity +relationship: RO:0002212 GO:0071805 ! negatively regulates potassium ion transmembrane transport +created_by: rl +creation_date: 2012-06-15T01:14:10Z + +[Term] +id: GO:1901018 +name: positive regulation of potassium ion transmembrane transporter activity +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of potassium ion transmembrane transporter activity." [GOC:BHF, GOC:TermGenie] +subset: gocheck_obsoletion_candidate +synonym: "activation of potassium ion transmembrane transporter activity" NARROW [GOC:TermGenie] +synonym: "activation of potassium transporter activity" EXACT [GOC:TermGenie] +synonym: "positive regulation of potassium transporter activity" EXACT [GOC:TermGenie] +synonym: "up regulation of potassium ion transmembrane transporter activity" EXACT [GOC:TermGenie] +synonym: "up regulation of potassium transporter activity" EXACT [GOC:TermGenie] +synonym: "up-regulation of potassium ion transmembrane transporter activity" EXACT [GOC:TermGenie] +synonym: "up-regulation of potassium transporter activity" EXACT [GOC:TermGenie] +synonym: "upregulation of potassium ion transmembrane transporter activity" EXACT [GOC:TermGenie] +synonym: "upregulation of potassium transporter activity" EXACT [GOC:TermGenie] +is_a: GO:0032414 ! positive regulation of ion transmembrane transporter activity +is_a: GO:1901016 ! regulation of potassium ion transmembrane transporter activity +is_a: GO:1901381 ! positive regulation of potassium ion transmembrane transport +intersection_of: GO:0065007 ! biological regulation +intersection_of: RO:0002213 GO:0015079 ! positively regulates potassium ion transmembrane transporter activity +relationship: RO:0002213 GO:0015079 ! positively regulates potassium ion transmembrane transporter activity +relationship: RO:0002213 GO:0071805 ! positively regulates potassium ion transmembrane transport +created_by: rl +creation_date: 2012-06-15T01:14:18Z + [Term] id: GO:1901019 name: regulation of calcium ion transmembrane transporter activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of calcium ion transmembrane transporter activity." [GOC:BHF, GOC:TermGenie] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate is_a: GO:0032412 ! regulation of monoatomic ion transmembrane transporter activity is_a: GO:1903169 ! regulation of calcium ion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0015085 ! calcium ion transmembrane transporter activity -relationship: regulates GO:0015085 ! calcium ion transmembrane transporter activity -relationship: regulates GO:0070588 ! calcium ion transmembrane transport +intersection_of: RO:0002211 GO:0015085 ! regulates (processual) calcium ion transmembrane transporter activity +relationship: RO:0002211 GO:0015085 ! regulates (processual) calcium ion transmembrane transporter activity +relationship: RO:0002211 GO:0070588 ! regulates (processual) calcium ion transmembrane transport created_by: rl creation_date: 2012-06-15T07:54:12Z @@ -119594,7 +119040,7 @@ id: GO:1901020 name: negative regulation of calcium ion transmembrane transporter activity namespace: biological_process def: "Any process that stops, prevents or reduces the frequency, rate or extent of calcium ion transmembrane transporter activity." [GOC:BHF, GOC:TermGenie] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "down regulation of calcium ion transmembrane transporter activity" EXACT [GOC:TermGenie] synonym: "down-regulation of calcium ion transmembrane transporter activity" EXACT [GOC:TermGenie] synonym: "downregulation of calcium ion transmembrane transporter activity" EXACT [GOC:TermGenie] @@ -119603,9 +119049,9 @@ is_a: GO:0032413 ! negative regulation of ion transmembrane transporter activity is_a: GO:1901019 ! regulation of calcium ion transmembrane transporter activity is_a: GO:1903170 ! negative regulation of calcium ion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0015085 ! calcium ion transmembrane transporter activity -relationship: negatively_regulates GO:0015085 ! calcium ion transmembrane transporter activity -relationship: negatively_regulates GO:0070588 ! calcium ion transmembrane transport +intersection_of: RO:0002212 GO:0015085 ! negatively regulates calcium ion transmembrane transporter activity +relationship: RO:0002212 GO:0015085 ! negatively regulates calcium ion transmembrane transporter activity +relationship: RO:0002212 GO:0070588 ! negatively regulates calcium ion transmembrane transport created_by: rl creation_date: 2012-06-15T07:54:32Z @@ -119614,7 +119060,7 @@ id: GO:1901021 name: positive regulation of calcium ion transmembrane transporter activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of calcium ion transmembrane transporter activity." [GOC:BHF, GOC:TermGenie] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "activation of calcium ion transmembrane transporter activity" NARROW [GOC:TermGenie] synonym: "up regulation of calcium ion transmembrane transporter activity" EXACT [GOC:TermGenie] synonym: "up-regulation of calcium ion transmembrane transporter activity" EXACT [GOC:TermGenie] @@ -119623,9 +119069,9 @@ is_a: GO:0032414 ! positive regulation of ion transmembrane transporter activity is_a: GO:1901019 ! regulation of calcium ion transmembrane transporter activity is_a: GO:1904427 ! positive regulation of calcium ion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0015085 ! calcium ion transmembrane transporter activity -relationship: positively_regulates GO:0015085 ! calcium ion transmembrane transporter activity -relationship: positively_regulates GO:0070588 ! calcium ion transmembrane transport +intersection_of: RO:0002213 GO:0015085 ! positively regulates calcium ion transmembrane transporter activity +relationship: RO:0002213 GO:0015085 ! positively regulates calcium ion transmembrane transporter activity +relationship: RO:0002213 GO:0070588 ! positively regulates calcium ion transmembrane transport created_by: rl creation_date: 2012-06-15T07:54:40Z @@ -119639,8 +119085,8 @@ synonym: "glucosamines metabolic process" EXACT [CHEBI:24271] synonym: "glucosamines metabolism" EXACT [GOC:TermGenie] is_a: GO:0006040 ! amino sugar metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:24271 ! glucosamines -relationship: has_primary_input_or_output CHEBI:24271 ! glucosamines +intersection_of: RO:0004007 CHEBI:24271 ! has primary input or output glucosamines +relationship: RO:0004007 CHEBI:24271 ! has primary input or output glucosamines created_by: bf creation_date: 2012-07-02T03:18:04Z @@ -119659,8 +119105,8 @@ synonym: "glucosamines degradation" EXACT [GOC:TermGenie] is_a: GO:0046348 ! amino sugar catabolic process is_a: GO:1901071 ! glucosamine-containing compound metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:24271 ! glucosamines -relationship: has_primary_input CHEBI:24271 ! glucosamines +intersection_of: RO:0004009 CHEBI:24271 ! has primary input glucosamines +relationship: RO:0004009 CHEBI:24271 ! has primary input glucosamines created_by: bf creation_date: 2012-07-02T03:18:25Z @@ -119681,8 +119127,8 @@ synonym: "glucosamines synthesis" EXACT [GOC:TermGenie] is_a: GO:0046349 ! amino sugar biosynthetic process is_a: GO:1901071 ! glucosamine-containing compound metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:24271 ! glucosamines -relationship: has_primary_output CHEBI:24271 ! glucosamines +intersection_of: RO:0004008 CHEBI:24271 ! has primary output glucosamines +relationship: RO:0004008 CHEBI:24271 ! has primary output glucosamines created_by: bf creation_date: 2012-07-02T03:18:33Z @@ -119711,8 +119157,8 @@ subset: goslim_prokaryote synonym: "carbohydrate derivative metabolism" EXACT [GOC:TermGenie] is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:63299 ! carbohydrate derivative -relationship: has_primary_input_or_output CHEBI:63299 ! carbohydrate derivative +intersection_of: RO:0004007 CHEBI:63299 ! has primary input or output carbohydrate derivative +relationship: RO:0004007 CHEBI:63299 ! has primary input or output carbohydrate derivative created_by: bf creation_date: 2012-07-12T04:05:09Z @@ -119727,8 +119173,8 @@ synonym: "carbohydrate derivative degradation" EXACT [GOC:TermGenie] is_a: GO:0009056 ! catabolic process is_a: GO:1901135 ! carbohydrate derivative metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:63299 ! carbohydrate derivative -relationship: has_primary_input CHEBI:63299 ! carbohydrate derivative +intersection_of: RO:0004009 CHEBI:63299 ! has primary input carbohydrate derivative +relationship: RO:0004009 CHEBI:63299 ! has primary input carbohydrate derivative created_by: bf creation_date: 2012-07-12T04:05:31Z @@ -119744,8 +119190,8 @@ synonym: "carbohydrate derivative synthesis" EXACT [GOC:TermGenie] is_a: GO:0009058 ! biosynthetic process is_a: GO:1901135 ! carbohydrate derivative metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:63299 ! carbohydrate derivative -relationship: has_primary_output CHEBI:63299 ! carbohydrate derivative +intersection_of: RO:0004008 CHEBI:63299 ! has primary output carbohydrate derivative +relationship: RO:0004008 CHEBI:63299 ! has primary output carbohydrate derivative created_by: bf creation_date: 2012-07-12T04:05:39Z @@ -119757,10 +119203,12 @@ def: "The chemical reactions and pathways involving insulin." [GOC:TermGenie] synonym: "insulin metabolism" EXACT [GOC:TermGenie] is_a: GO:0019538 ! protein metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output PR:000009054 ! insulin gene translation product -relationship: has_primary_input_or_output PR:000009054 ! insulin gene translation product +intersection_of: RO:0004007 PR:000009054 ! has primary input or output insulin gene translation product +relationship: never_in_taxon NCBITaxon:2 ! Bacteria +relationship: never_in_taxon NCBITaxon:2157 ! Archaea relationship: never_in_taxon NCBITaxon:33090 ! Viridiplantae -relationship: never_in_taxon NCBITaxon_Union:0000023 +relationship: never_in_taxon NCBITaxon:4751 ! Fungi +relationship: RO:0004007 PR:000009054 ! has primary input or output insulin gene translation product created_by: pm creation_date: 2012-07-13T12:32:40Z @@ -119775,8 +119223,8 @@ synonym: "insulin degradation" EXACT [GOC:TermGenie] is_a: GO:0030163 ! protein catabolic process is_a: GO:1901142 ! insulin metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input PR:000009054 ! insulin gene translation product -relationship: has_primary_input PR:000009054 ! insulin gene translation product +intersection_of: RO:0004009 PR:000009054 ! has primary input insulin gene translation product +relationship: RO:0004009 PR:000009054 ! has primary input insulin gene translation product created_by: pm creation_date: 2012-07-13T12:33:03Z @@ -119838,10 +119286,10 @@ name: primary amino compound metabolic process namespace: biological_process def: "The chemical reactions and pathways involving primary amino compound." [GOC:TermGenie] synonym: "primary amino compound metabolism" EXACT [GOC:TermGenie] -is_a: GO:1901564 ! organonitrogen compound metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:50994 ! primary amino compound -relationship: has_primary_input_or_output CHEBI:50994 ! primary amino compound +intersection_of: RO:0004007 CHEBI:50994 ! has primary input or output primary amino compound +relationship: RO:0004007 CHEBI:50994 ! has primary input or output primary amino compound created_by: bf creation_date: 2012-07-18T04:44:39Z @@ -119853,11 +119301,11 @@ def: "The chemical reactions and pathways resulting in the breakdown of primary synonym: "primary amino compound breakdown" EXACT [GOC:TermGenie] synonym: "primary amino compound catabolism" EXACT [GOC:TermGenie] synonym: "primary amino compound degradation" EXACT [GOC:TermGenie] +is_a: GO:0009056 ! catabolic process is_a: GO:1901160 ! primary amino compound metabolic process -is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:50994 ! primary amino compound -relationship: has_primary_input CHEBI:50994 ! primary amino compound +intersection_of: RO:0004009 CHEBI:50994 ! has primary input primary amino compound +relationship: RO:0004009 CHEBI:50994 ! has primary input primary amino compound created_by: bf creation_date: 2012-07-18T04:45:06Z @@ -119870,11 +119318,11 @@ synonym: "primary amino compound anabolism" EXACT [GOC:TermGenie] synonym: "primary amino compound biosynthesis" EXACT [GOC:TermGenie] synonym: "primary amino compound formation" EXACT [GOC:TermGenie] synonym: "primary amino compound synthesis" EXACT [GOC:TermGenie] +is_a: GO:0009058 ! biosynthetic process is_a: GO:1901160 ! primary amino compound metabolic process -is_a: GO:1901566 ! organonitrogen compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:50994 ! primary amino compound -relationship: has_primary_output CHEBI:50994 ! primary amino compound +intersection_of: RO:0004008 CHEBI:50994 ! has primary output primary amino compound +relationship: RO:0004008 CHEBI:50994 ! has primary output primary amino compound created_by: bf creation_date: 2012-07-18T04:45:14Z @@ -119885,8 +119333,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of trophoblast cell migration." [GOC:BHF, GOC:TermGenie] is_a: GO:0030334 ! regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061450 ! trophoblast cell migration -relationship: regulates GO:0061450 ! trophoblast cell migration +intersection_of: RO:0002211 GO:0061450 ! regulates (processual) trophoblast cell migration +relationship: RO:0002211 GO:0061450 ! regulates (processual) trophoblast cell migration created_by: vk creation_date: 2012-07-19T07:53:06Z @@ -119904,9 +119352,9 @@ is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1901163 ! regulation of trophoblast cell migration is_a: GO:2000242 ! negative regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0061450 ! trophoblast cell migration -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0061450 ! trophoblast cell migration +intersection_of: RO:0002212 GO:0061450 ! negatively regulates trophoblast cell migration +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0061450 ! negatively regulates trophoblast cell migration created_by: vk creation_date: 2012-07-19T07:53:28Z @@ -119925,10 +119373,10 @@ is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1901163 ! regulation of trophoblast cell migration is_a: GO:2000243 ! positive regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061450 ! trophoblast cell migration -relationship: positively_regulates GO:0032501 ! multicellular organismal process -relationship: positively_regulates GO:0032502 ! developmental process -relationship: positively_regulates GO:0061450 ! trophoblast cell migration +intersection_of: RO:0002213 GO:0061450 ! positively regulates trophoblast cell migration +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process +relationship: RO:0002213 GO:0032502 ! positively regulates developmental process +relationship: RO:0002213 GO:0061450 ! positively regulates trophoblast cell migration created_by: vk creation_date: 2012-07-19T07:53:35Z @@ -119952,8 +119400,8 @@ def: "Any process that modulates the frequency, rate or extent of formation of t synonym: "regulation of translation initiation ternary complex assembly" EXACT [GOC:TermGenie] is_a: GO:0043254 ! regulation of protein-containing complex assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001677 ! formation of translation initiation ternary complex -relationship: regulates GO:0001677 ! formation of translation initiation ternary complex +intersection_of: RO:0002211 GO:0001677 ! regulates (processual) formation of translation initiation ternary complex +relationship: RO:0002211 GO:0001677 ! regulates (processual) formation of translation initiation ternary complex created_by: ss creation_date: 2012-07-25T02:26:58Z @@ -119975,9 +119423,9 @@ is_a: GO:0031333 ! negative regulation of protein-containing complex assembly is_a: GO:0045947 ! negative regulation of translational initiation is_a: GO:1901190 ! regulation of formation of translation initiation ternary complex intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001677 ! formation of translation initiation ternary complex -relationship: negatively_regulates GO:0001677 ! formation of translation initiation ternary complex -relationship: negatively_regulates GO:0006413 ! translational initiation +intersection_of: RO:0002212 GO:0001677 ! negatively regulates formation of translation initiation ternary complex +relationship: RO:0002212 GO:0001677 ! negatively regulates formation of translation initiation ternary complex +relationship: RO:0002212 GO:0006413 ! negatively regulates translational initiation created_by: ss creation_date: 2012-07-25T02:27:21Z @@ -119998,8 +119446,8 @@ synonym: "upregulation of translation initiation ternary complex assembly" EXACT is_a: GO:0031334 ! positive regulation of protein-containing complex assembly is_a: GO:1901190 ! regulation of formation of translation initiation ternary complex intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001677 ! formation of translation initiation ternary complex -relationship: positively_regulates GO:0001677 ! formation of translation initiation ternary complex +intersection_of: RO:0002213 GO:0001677 ! positively regulates formation of translation initiation ternary complex +relationship: RO:0002213 GO:0001677 ! positively regulates formation of translation initiation ternary complex created_by: ss creation_date: 2012-07-25T02:27:29Z @@ -120011,9 +119459,9 @@ def: "Any process that modulates the frequency, rate or extent of extracellular is_a: GO:0044087 ! regulation of cellular component biogenesis is_a: GO:1903053 ! regulation of extracellular matrix organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0085029 ! extracellular matrix assembly -relationship: regulates GO:0044085 ! cellular component biogenesis -relationship: regulates GO:0085029 ! extracellular matrix assembly +intersection_of: RO:0002211 GO:0085029 ! regulates (processual) extracellular matrix assembly +relationship: RO:0002211 GO:0044085 ! regulates (processual) cellular component biogenesis +relationship: RO:0002211 GO:0085029 ! regulates (processual) extracellular matrix assembly created_by: rl creation_date: 2012-07-27T04:04:00Z @@ -120029,8 +119477,8 @@ synonym: "inhibition of extracellular matrix assembly" NARROW [GOC:TermGenie] is_a: GO:1901201 ! regulation of extracellular matrix assembly is_a: GO:1903054 ! negative regulation of extracellular matrix organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0085029 ! extracellular matrix assembly -relationship: negatively_regulates GO:0085029 ! extracellular matrix assembly +intersection_of: RO:0002212 GO:0085029 ! negatively regulates extracellular matrix assembly +relationship: RO:0002212 GO:0085029 ! negatively regulates extracellular matrix assembly created_by: rl creation_date: 2012-07-27T04:04:24Z @@ -120047,9 +119495,9 @@ is_a: GO:0044089 ! positive regulation of cellular component biogenesis is_a: GO:1901201 ! regulation of extracellular matrix assembly is_a: GO:1903055 ! positive regulation of extracellular matrix organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0085029 ! extracellular matrix assembly -relationship: positively_regulates GO:0044085 ! cellular component biogenesis -relationship: positively_regulates GO:0085029 ! extracellular matrix assembly +intersection_of: RO:0002213 GO:0085029 ! positively regulates extracellular matrix assembly +relationship: RO:0002213 GO:0044085 ! positively regulates cellular component biogenesis +relationship: RO:0002213 GO:0085029 ! positively regulates extracellular matrix assembly created_by: rl creation_date: 2012-07-27T04:04:32Z @@ -120061,8 +119509,8 @@ def: "Any process that modulates the frequency, rate or extent of cardiac chambe synonym: "regulation of heart chamber formation" EXACT [GOC:TermGenie] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003207 ! cardiac chamber formation -relationship: regulates GO:0003207 ! cardiac chamber formation +intersection_of: RO:0002211 GO:0003207 ! regulates (processual) cardiac chamber formation +relationship: RO:0002211 GO:0003207 ! regulates (processual) cardiac chamber formation created_by: rl creation_date: 2012-07-31T07:18:35Z @@ -120083,8 +119531,8 @@ synonym: "negative regulation of heart chamber formation" EXACT [GOC:TermGenie] is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:1901210 ! regulation of cardiac chamber formation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003207 ! cardiac chamber formation -relationship: negatively_regulates GO:0003207 ! cardiac chamber formation +intersection_of: RO:0002212 GO:0003207 ! negatively regulates cardiac chamber formation +relationship: RO:0002212 GO:0003207 ! negatively regulates cardiac chamber formation created_by: rl creation_date: 2012-07-31T07:18:57Z @@ -120105,9 +119553,9 @@ synonym: "upregulation of heart chamber formation" EXACT [GOC:TermGenie] is_a: GO:1901210 ! regulation of cardiac chamber formation is_a: GO:1901221 ! positive regulation of cardiac chamber morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003207 ! cardiac chamber formation -relationship: positively_regulates GO:0003206 ! cardiac chamber morphogenesis -relationship: positively_regulates GO:0003207 ! cardiac chamber formation +intersection_of: RO:0002213 GO:0003207 ! positively regulates cardiac chamber formation +relationship: RO:0002213 GO:0003206 ! positively regulates cardiac chamber morphogenesis +relationship: RO:0002213 GO:0003207 ! positively regulates cardiac chamber formation created_by: rl creation_date: 2012-07-31T07:19:05Z @@ -120119,9 +119567,9 @@ def: "Any process that modulates the frequency, rate or extent of cardiac chambe synonym: "regulation of heart chamber morphogenesis" EXACT [GOC:TermGenie] is_a: GO:2000826 ! regulation of heart morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003206 ! cardiac chamber morphogenesis -relationship: regulates GO:0003007 ! heart morphogenesis -relationship: regulates GO:0003206 ! cardiac chamber morphogenesis +intersection_of: RO:0002211 GO:0003206 ! regulates (processual) cardiac chamber morphogenesis +relationship: RO:0002211 GO:0003007 ! regulates (processual) heart morphogenesis +relationship: RO:0002211 GO:0003206 ! regulates (processual) cardiac chamber morphogenesis created_by: rl creation_date: 2012-08-06T17:59:11Z @@ -120142,8 +119590,8 @@ synonym: "negative regulation of heart chamber morphogenesis" EXACT [GOC:TermGen is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:1901219 ! regulation of cardiac chamber morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003206 ! cardiac chamber morphogenesis -relationship: negatively_regulates GO:0003206 ! cardiac chamber morphogenesis +intersection_of: RO:0002212 GO:0003206 ! negatively regulates cardiac chamber morphogenesis +relationship: RO:0002212 GO:0003206 ! negatively regulates cardiac chamber morphogenesis created_by: rl creation_date: 2012-08-06T17:59:34Z @@ -120164,8 +119612,8 @@ synonym: "upregulation of heart chamber morphogenesis" EXACT [GOC:TermGenie] is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:1901219 ! regulation of cardiac chamber morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003206 ! cardiac chamber morphogenesis -relationship: positively_regulates GO:0003206 ! cardiac chamber morphogenesis +intersection_of: RO:0002213 GO:0003206 ! positively regulates cardiac chamber morphogenesis +relationship: RO:0002213 GO:0003206 ! positively regulates cardiac chamber morphogenesis created_by: rl creation_date: 2012-08-06T17:59:42Z @@ -120176,8 +119624,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of lung ciliated cell differentiation." [GOC:BHF, GOC:TermGenie] is_a: GO:0030856 ! regulation of epithelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061141 ! lung ciliated cell differentiation -relationship: regulates GO:0061141 ! lung ciliated cell differentiation +intersection_of: RO:0002211 GO:0061141 ! regulates (processual) lung ciliated cell differentiation +relationship: RO:0002211 GO:0061141 ! regulates (processual) lung ciliated cell differentiation created_by: vk creation_date: 2012-08-08T08:58:34Z @@ -120194,9 +119642,9 @@ is_a: GO:0030857 ! negative regulation of epithelial cell differentiation is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1901246 ! regulation of lung ciliated cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0061141 ! lung ciliated cell differentiation -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0061141 ! lung ciliated cell differentiation +intersection_of: RO:0002212 GO:0061141 ! negatively regulates lung ciliated cell differentiation +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0061141 ! negatively regulates lung ciliated cell differentiation created_by: vk creation_date: 2012-08-08T08:58:58Z @@ -120213,9 +119661,9 @@ is_a: GO:0030858 ! positive regulation of epithelial cell differentiation is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1901246 ! regulation of lung ciliated cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061141 ! lung ciliated cell differentiation -relationship: positively_regulates GO:0032501 ! multicellular organismal process -relationship: positively_regulates GO:0061141 ! lung ciliated cell differentiation +intersection_of: RO:0002213 GO:0061141 ! positively regulates lung ciliated cell differentiation +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process +relationship: RO:0002213 GO:0061141 ! positively regulates lung ciliated cell differentiation created_by: vk creation_date: 2012-08-08T08:59:05Z @@ -120227,8 +119675,8 @@ def: "Any process that modulates the frequency, rate or extent of lung goblet ce synonym: "regulation of pulmonary goblet cell differentiation" EXACT [GOC:TermGenie] is_a: GO:0030856 ! regulation of epithelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060480 ! lung goblet cell differentiation -relationship: regulates GO:0060480 ! lung goblet cell differentiation +intersection_of: RO:0002211 GO:0060480 ! regulates (processual) lung goblet cell differentiation +relationship: RO:0002211 GO:0060480 ! regulates (processual) lung goblet cell differentiation created_by: vk creation_date: 2012-08-08T08:59:12Z @@ -120250,9 +119698,9 @@ is_a: GO:0030857 ! negative regulation of epithelial cell differentiation is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1901249 ! regulation of lung goblet cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060480 ! lung goblet cell differentiation -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0060480 ! lung goblet cell differentiation +intersection_of: RO:0002212 GO:0060480 ! negatively regulates lung goblet cell differentiation +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0060480 ! negatively regulates lung goblet cell differentiation created_by: vk creation_date: 2012-08-08T08:59:36Z @@ -120274,9 +119722,9 @@ is_a: GO:0030858 ! positive regulation of epithelial cell differentiation is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1901249 ! regulation of lung goblet cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060480 ! lung goblet cell differentiation -relationship: positively_regulates GO:0032501 ! multicellular organismal process -relationship: positively_regulates GO:0060480 ! lung goblet cell differentiation +intersection_of: RO:0002213 GO:0060480 ! positively regulates lung goblet cell differentiation +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process +relationship: RO:0002213 GO:0060480 ! positively regulates lung goblet cell differentiation created_by: vk creation_date: 2012-08-08T08:59:44Z @@ -120287,8 +119735,8 @@ namespace: biological_process def: "The directed movement of a carbohydrate derivative into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:bf, GOC:jl, GOC:TermGenie] is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:63299 ! carbohydrate derivative -relationship: has_primary_input CHEBI:63299 ! carbohydrate derivative +intersection_of: RO:0004009 CHEBI:63299 ! has primary input carbohydrate derivative +relationship: RO:0004009 CHEBI:63299 ! has primary input carbohydrate derivative created_by: bf creation_date: 2012-08-16T14:51:22Z @@ -120299,8 +119747,8 @@ namespace: molecular_function def: "Binding to nucleoside phosphate." [GOC:TermGenie] is_a: GO:0097159 ! organic cyclic compound binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:25608 ! nucleoside phosphate -relationship: has_primary_input CHEBI:25608 ! nucleoside phosphate +intersection_of: RO:0004009 CHEBI:25608 ! has primary input nucleoside phosphate +relationship: RO:0004009 CHEBI:25608 ! has primary input nucleoside phosphate created_by: bf creation_date: 2012-08-17T12:59:58Z @@ -120316,8 +119764,8 @@ is_a: GO:0006753 ! nucleoside phosphate metabolic process is_a: GO:0034655 ! nucleobase-containing compound catabolic process is_a: GO:0046434 ! organophosphate catabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:25608 ! nucleoside phosphate -relationship: has_primary_input CHEBI:25608 ! nucleoside phosphate +intersection_of: RO:0004009 CHEBI:25608 ! has primary input nucleoside phosphate +relationship: RO:0004009 CHEBI:25608 ! has primary input nucleoside phosphate created_by: bf creation_date: 2012-08-20T12:33:25Z @@ -120334,8 +119782,8 @@ is_a: GO:0006753 ! nucleoside phosphate metabolic process is_a: GO:0034654 ! nucleobase-containing compound biosynthetic process is_a: GO:0090407 ! organophosphate biosynthetic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:25608 ! nucleoside phosphate -relationship: has_primary_output CHEBI:25608 ! nucleoside phosphate +intersection_of: RO:0004008 CHEBI:25608 ! has primary output nucleoside phosphate +relationship: RO:0004008 CHEBI:25608 ! has primary output nucleoside phosphate created_by: bf creation_date: 2012-08-20T12:33:45Z @@ -120349,8 +119797,8 @@ synonym: "regulation of sperm movement" BROAD [GOC:TermGenie] is_a: GO:0060295 ! regulation of cilium movement involved in cell motility is_a: GO:2000241 ! regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030317 ! flagellated sperm motility -relationship: regulates GO:0030317 ! flagellated sperm motility +intersection_of: RO:0002211 GO:0030317 ! regulates (processual) flagellated sperm motility +relationship: RO:0002211 GO:0030317 ! regulates (processual) flagellated sperm motility created_by: hjd creation_date: 2012-08-22T20:50:14Z @@ -120374,8 +119822,8 @@ is_a: GO:1901317 ! regulation of flagellated sperm motility is_a: GO:1902020 ! negative regulation of cilium-dependent cell motility is_a: GO:2000242 ! negative regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030317 ! flagellated sperm motility -relationship: negatively_regulates GO:0030317 ! flagellated sperm motility +intersection_of: RO:0002212 GO:0030317 ! negatively regulates flagellated sperm motility +relationship: RO:0002212 GO:0030317 ! negatively regulates flagellated sperm motility created_by: hjd creation_date: 2012-08-22T20:50:35Z @@ -120386,8 +119834,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of odontoblast differentiation." [GOC:TermGenie] is_a: GO:0030856 ! regulation of epithelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0071895 ! odontoblast differentiation -relationship: regulates GO:0071895 ! odontoblast differentiation +intersection_of: RO:0002211 GO:0071895 ! regulates (processual) odontoblast differentiation +relationship: RO:0002211 GO:0071895 ! regulates (processual) odontoblast differentiation created_by: hjd creation_date: 2012-08-31T16:50:05Z @@ -120403,8 +119851,8 @@ synonym: "inhibition of odontoblast differentiation" NARROW [GOC:TermGenie] is_a: GO:0002085 ! inhibition of neuroepithelial cell differentiation is_a: GO:1901329 ! regulation of odontoblast differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0071895 ! odontoblast differentiation -relationship: negatively_regulates GO:0071895 ! odontoblast differentiation +intersection_of: RO:0002212 GO:0071895 ! negatively regulates odontoblast differentiation +relationship: RO:0002212 GO:0071895 ! negatively regulates odontoblast differentiation created_by: hjd creation_date: 2012-08-31T16:50:27Z @@ -120420,8 +119868,8 @@ synonym: "upregulation of odontoblast differentiation" EXACT [GOC:TermGenie] is_a: GO:1901329 ! regulation of odontoblast differentiation is_a: GO:1902913 ! positive regulation of neuroepithelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0071895 ! odontoblast differentiation -relationship: positively_regulates GO:0071895 ! odontoblast differentiation +intersection_of: RO:0002213 GO:0071895 ! positively regulates odontoblast differentiation +relationship: RO:0002213 GO:0071895 ! positively regulates odontoblast differentiation created_by: hjd creation_date: 2012-08-31T16:50:35Z @@ -120432,8 +119880,8 @@ namespace: molecular_function def: "Binding to catecholamine." [GOC:TermGenie] is_a: GO:0097159 ! organic cyclic compound binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:33567 ! catecholamine -relationship: has_primary_input CHEBI:33567 ! catecholamine +intersection_of: RO:0004009 CHEBI:33567 ! has primary input catecholamine +relationship: RO:0004009 CHEBI:33567 ! has primary input catecholamine created_by: bf creation_date: 2012-09-03T14:08:44Z @@ -120445,8 +119893,8 @@ def: "Any process that modulates the frequency, rate or extent of vasculature de synonym: "regulation of vascular system development" RELATED [GOC:TermGenie] is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001944 ! vasculature development -relationship: regulates GO:0001944 ! vasculature development +intersection_of: RO:0002211 GO:0001944 ! regulates (processual) vasculature development +relationship: RO:0002211 GO:0001944 ! regulates (processual) vasculature development created_by: bf creation_date: 2012-09-06T09:16:15Z @@ -120468,8 +119916,8 @@ is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1901342 ! regulation of vasculature development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001944 ! vasculature development -relationship: negatively_regulates GO:0001944 ! vasculature development +intersection_of: RO:0002212 GO:0001944 ! negatively regulates vasculature development +relationship: RO:0002212 GO:0001944 ! negatively regulates vasculature development created_by: bf creation_date: 2012-09-06T09:17:24Z @@ -120480,8 +119928,8 @@ namespace: molecular_function def: "Binding to heterocyclic compound." [GOC:TermGenie] is_a: GO:0036094 ! small molecule binding intersection_of: GO:0036094 ! small molecule binding -intersection_of: has_primary_input CHEBI:5686 ! heterocyclic compound -relationship: has_primary_input CHEBI:5686 ! heterocyclic compound +intersection_of: RO:0004009 CHEBI:5686 ! has primary input heterocyclic compound +relationship: RO:0004009 CHEBI:5686 ! has primary input heterocyclic compound created_by: bf creation_date: 2012-09-14T13:53:50Z @@ -120492,8 +119940,8 @@ namespace: biological_process def: "The directed movement of an acetate ester into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:TermGenie] is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:47622 ! acetate ester -relationship: has_primary_input CHEBI:47622 ! acetate ester +intersection_of: RO:0004009 CHEBI:47622 ! has primary input acetate ester +relationship: RO:0004009 CHEBI:47622 ! has primary input acetate ester created_by: bf creation_date: 2012-09-28T10:42:13Z @@ -120504,12 +119952,64 @@ namespace: molecular_function def: "Enables the transfer of an acetate ester from one side of a membrane to the other." [GOC:TermGenie] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:47622 ! acetate ester -relationship: has_primary_input CHEBI:47622 ! acetate ester +intersection_of: RO:0004009 CHEBI:47622 ! has primary input acetate ester relationship: part_of GO:1901374 ! acetate ester transport +relationship: RO:0004009 CHEBI:47622 ! has primary input acetate ester created_by: bf creation_date: 2012-09-28T10:47:08Z +[Term] +id: GO:1901379 +name: regulation of potassium ion transmembrane transport +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of potassium ion transmembrane transport." [GOC:BHF, GOC:TermGenie] +synonym: "regulation of potassium ion membrane transport" EXACT [] +is_a: GO:0043266 ! regulation of potassium ion transport +is_a: GO:1904062 ! regulation of monoatomic cation transmembrane transport +intersection_of: GO:0065007 ! biological regulation +intersection_of: RO:0002211 GO:0071805 ! regulates (processual) potassium ion transmembrane transport +relationship: RO:0002211 GO:0071805 ! regulates (processual) potassium ion transmembrane transport +created_by: rl +creation_date: 2012-09-28T15:58:00Z + +[Term] +id: GO:1901380 +name: negative regulation of potassium ion transmembrane transport +namespace: biological_process +def: "Any process that stops, prevents or reduces the frequency, rate or extent of potassium ion transmembrane transport." [GOC:BHF, GOC:TermGenie] +synonym: "down regulation of potassium ion transmembrane transport" EXACT [GOC:TermGenie] +synonym: "down-regulation of potassium ion transmembrane transport" EXACT [GOC:TermGenie] +synonym: "downregulation of potassium ion transmembrane transport" EXACT [GOC:TermGenie] +synonym: "inhibition of potassium ion transmembrane transport" NARROW [GOC:TermGenie] +synonym: "negative regulation of potassium ion membrane transport" EXACT [] +is_a: GO:0043267 ! negative regulation of potassium ion transport +is_a: GO:1901379 ! regulation of potassium ion transmembrane transport +is_a: GO:1904063 ! negative regulation of cation transmembrane transport +intersection_of: GO:0065007 ! biological regulation +intersection_of: RO:0002212 GO:0071805 ! negatively regulates potassium ion transmembrane transport +relationship: RO:0002212 GO:0071805 ! negatively regulates potassium ion transmembrane transport +created_by: rl +creation_date: 2012-09-28T15:59:08Z + +[Term] +id: GO:1901381 +name: positive regulation of potassium ion transmembrane transport +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of potassium ion transmembrane transport." [GOC:BHF, GOC:TermGenie] +synonym: "activation of potassium ion transmembrane transport" NARROW [GOC:TermGenie] +synonym: "positive regulation of potassium ion membrane transport" EXACT [] +synonym: "up regulation of potassium ion transmembrane transport" EXACT [GOC:TermGenie] +synonym: "up-regulation of potassium ion transmembrane transport" EXACT [GOC:TermGenie] +synonym: "upregulation of potassium ion transmembrane transport" EXACT [GOC:TermGenie] +is_a: GO:0043268 ! positive regulation of potassium ion transport +is_a: GO:1901379 ! regulation of potassium ion transmembrane transport +is_a: GO:1904064 ! positive regulation of cation transmembrane transport +intersection_of: GO:0065007 ! biological regulation +intersection_of: RO:0002213 GO:0071805 ! positively regulates potassium ion transmembrane transport +relationship: RO:0002213 GO:0071805 ! positively regulates potassium ion transmembrane transport +created_by: rl +creation_date: 2012-09-28T15:59:25Z + [Term] id: GO:1901382 name: regulation of chorionic trophoblast cell proliferation @@ -120517,8 +120017,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of chorionic trophoblast cell proliferation." [GOC:BHF, GOC:TermGenie] is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0097360 ! chorionic trophoblast cell proliferation -relationship: regulates GO:0097360 ! chorionic trophoblast cell proliferation +intersection_of: RO:0002211 GO:0097360 ! regulates (processual) chorionic trophoblast cell proliferation +relationship: RO:0002211 GO:0097360 ! regulates (processual) chorionic trophoblast cell proliferation created_by: vk creation_date: 2012-10-01T10:03:13Z @@ -120534,8 +120034,8 @@ synonym: "inhibition of chorionic trophoblast cell proliferation" NARROW [GOC:Te is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:1901382 ! regulation of chorionic trophoblast cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0097360 ! chorionic trophoblast cell proliferation -relationship: negatively_regulates GO:0097360 ! chorionic trophoblast cell proliferation +intersection_of: RO:0002212 GO:0097360 ! negatively regulates chorionic trophoblast cell proliferation +relationship: RO:0002212 GO:0097360 ! negatively regulates chorionic trophoblast cell proliferation created_by: vk creation_date: 2012-10-01T10:04:23Z @@ -120551,8 +120051,8 @@ synonym: "upregulation of chorionic trophoblast cell proliferation" EXACT [GOC:T is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:1901382 ! regulation of chorionic trophoblast cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0097360 ! chorionic trophoblast cell proliferation -relationship: positively_regulates GO:0097360 ! chorionic trophoblast cell proliferation +intersection_of: RO:0002213 GO:0097360 ! positively regulates chorionic trophoblast cell proliferation +relationship: RO:0002213 GO:0097360 ! positively regulates chorionic trophoblast cell proliferation created_by: vk creation_date: 2012-10-01T10:04:41Z @@ -120564,8 +120064,8 @@ def: "Any process that modulates the frequency, rate or extent of tetrapyrrole m synonym: "regulation of tetrapyrrole metabolism" EXACT [GOC:TermGenie] is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0033013 ! tetrapyrrole metabolic process -relationship: regulates GO:0033013 ! tetrapyrrole metabolic process +intersection_of: RO:0002211 GO:0033013 ! regulates (processual) tetrapyrrole metabolic process +relationship: RO:0002211 GO:0033013 ! regulates (processual) tetrapyrrole metabolic process created_by: tt creation_date: 2012-10-01T14:34:03Z @@ -120586,8 +120086,8 @@ synonym: "negative regulation of tetrapyrrole metabolism" EXACT [GOC:TermGenie] is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:1901401 ! regulation of tetrapyrrole metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0033013 ! tetrapyrrole metabolic process -relationship: negatively_regulates GO:0033013 ! tetrapyrrole metabolic process +intersection_of: RO:0002212 GO:0033013 ! negatively regulates tetrapyrrole metabolic process +relationship: RO:0002212 GO:0033013 ! negatively regulates tetrapyrrole metabolic process created_by: tt creation_date: 2012-10-01T14:35:11Z @@ -120608,8 +120108,8 @@ synonym: "upregulation of tetrapyrrole metabolism" EXACT [GOC:TermGenie] is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:1901401 ! regulation of tetrapyrrole metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0033013 ! tetrapyrrole metabolic process -relationship: positively_regulates GO:0033013 ! tetrapyrrole metabolic process +intersection_of: RO:0002213 GO:0033013 ! positively regulates tetrapyrrole metabolic process +relationship: RO:0002213 GO:0033013 ! positively regulates tetrapyrrole metabolic process created_by: tt creation_date: 2012-10-01T14:35:29Z @@ -120624,8 +120124,8 @@ synonym: "regulation of tetrapyrrole degradation" EXACT [GOC:TermGenie] is_a: GO:0009894 ! regulation of catabolic process is_a: GO:1901401 ! regulation of tetrapyrrole metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0033015 ! tetrapyrrole catabolic process -relationship: regulates GO:0033015 ! tetrapyrrole catabolic process +intersection_of: RO:0002211 GO:0033015 ! regulates (processual) tetrapyrrole catabolic process +relationship: RO:0002211 GO:0033015 ! regulates (processual) tetrapyrrole catabolic process created_by: tt creation_date: 2012-10-01T14:38:12Z @@ -120657,8 +120157,8 @@ is_a: GO:0009895 ! negative regulation of catabolic process is_a: GO:1901402 ! negative regulation of tetrapyrrole metabolic process is_a: GO:1901404 ! regulation of tetrapyrrole catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0033015 ! tetrapyrrole catabolic process -relationship: negatively_regulates GO:0033015 ! tetrapyrrole catabolic process +intersection_of: RO:0002212 GO:0033015 ! negatively regulates tetrapyrrole catabolic process +relationship: RO:0002212 GO:0033015 ! negatively regulates tetrapyrrole catabolic process created_by: tt creation_date: 2012-10-01T14:39:22Z @@ -120690,8 +120190,8 @@ is_a: GO:0009896 ! positive regulation of catabolic process is_a: GO:1901403 ! positive regulation of tetrapyrrole metabolic process is_a: GO:1901404 ! regulation of tetrapyrrole catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0033015 ! tetrapyrrole catabolic process -relationship: positively_regulates GO:0033015 ! tetrapyrrole catabolic process +intersection_of: RO:0002213 GO:0033015 ! positively regulates tetrapyrrole catabolic process +relationship: RO:0002213 GO:0033015 ! positively regulates tetrapyrrole catabolic process created_by: tt creation_date: 2012-10-01T14:39:40Z @@ -120707,8 +120207,8 @@ synonym: "regulation of tetrapyrrole synthesis from glutamate" EXACT [GOC:TermGe is_a: GO:1901463 ! regulation of tetrapyrrole biosynthetic process is_a: GO:2000211 ! regulation of glutamate metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0033526 ! tetrapyrrole biosynthetic process from glutamate -relationship: regulates GO:0033526 ! tetrapyrrole biosynthetic process from glutamate +intersection_of: RO:0002211 GO:0033526 ! regulates (processual) tetrapyrrole biosynthetic process from glutamate +relationship: RO:0002211 GO:0033526 ! regulates (processual) tetrapyrrole biosynthetic process from glutamate created_by: tt creation_date: 2012-10-01T16:20:56Z @@ -120745,8 +120245,8 @@ is_a: GO:1901410 ! regulation of tetrapyrrole biosynthetic process from glutamat is_a: GO:1901464 ! negative regulation of tetrapyrrole biosynthetic process is_a: GO:2000212 ! negative regulation of glutamate metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0033526 ! tetrapyrrole biosynthetic process from glutamate -relationship: negatively_regulates GO:0033526 ! tetrapyrrole biosynthetic process from glutamate +intersection_of: RO:0002212 GO:0033526 ! negatively regulates tetrapyrrole biosynthetic process from glutamate +relationship: RO:0002212 GO:0033526 ! negatively regulates tetrapyrrole biosynthetic process from glutamate created_by: tt creation_date: 2012-10-01T16:22:03Z @@ -120783,8 +120283,8 @@ is_a: GO:1901410 ! regulation of tetrapyrrole biosynthetic process from glutamat is_a: GO:1901465 ! positive regulation of tetrapyrrole biosynthetic process is_a: GO:2000213 ! positive regulation of glutamate metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0033526 ! tetrapyrrole biosynthetic process from glutamate -relationship: positively_regulates GO:0033526 ! tetrapyrrole biosynthetic process from glutamate +intersection_of: RO:0002213 GO:0033526 ! positively regulates tetrapyrrole biosynthetic process from glutamate +relationship: RO:0002213 GO:0033526 ! positively regulates tetrapyrrole biosynthetic process from glutamate created_by: tt creation_date: 2012-10-01T16:22:21Z @@ -120795,8 +120295,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of response to alcohol." [GOC:mengo_curators, GOC:TermGenie] is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0097305 ! response to alcohol -relationship: regulates GO:0097305 ! response to alcohol +intersection_of: RO:0002211 GO:0097305 ! regulates (processual) response to alcohol +relationship: RO:0002211 GO:0097305 ! regulates (processual) response to alcohol created_by: tt creation_date: 2012-10-01T16:52:13Z @@ -120812,8 +120312,8 @@ synonym: "inhibition of response to alcohol" NARROW [GOC:TermGenie] is_a: GO:0048585 ! negative regulation of response to stimulus is_a: GO:1901419 ! regulation of response to alcohol intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0097305 ! response to alcohol -relationship: negatively_regulates GO:0097305 ! response to alcohol +intersection_of: RO:0002212 GO:0097305 ! negatively regulates response to alcohol +relationship: RO:0002212 GO:0097305 ! negatively regulates response to alcohol created_by: tt creation_date: 2012-10-01T16:53:25Z @@ -120829,8 +120329,8 @@ synonym: "upregulation of response to alcohol" EXACT [GOC:TermGenie] is_a: GO:0048584 ! positive regulation of response to stimulus is_a: GO:1901419 ! regulation of response to alcohol intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0097305 ! response to alcohol -relationship: positively_regulates GO:0097305 ! response to alcohol +intersection_of: RO:0002213 GO:0097305 ! positively regulates response to alcohol +relationship: RO:0002213 GO:0097305 ! positively regulates response to alcohol created_by: tt creation_date: 2012-10-01T16:53:42Z @@ -120841,8 +120341,8 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a benzene stimulus." [GOC:mengo_curators, GOC:TermGenie] is_a: GO:0014070 ! response to organic cyclic compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:16716 ! benzene -relationship: has_primary_input CHEBI:16716 ! benzene +intersection_of: RO:0004009 CHEBI:16716 ! has primary input benzene +relationship: RO:0004009 CHEBI:16716 ! has primary input benzene created_by: tt creation_date: 2012-10-01T18:35:11Z @@ -120853,8 +120353,8 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toluene stimulus." [GOC:mengo_curators, GOC:TermGenie] is_a: GO:0014070 ! response to organic cyclic compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:17578 ! toluene -relationship: has_primary_input CHEBI:17578 ! toluene +intersection_of: RO:0004009 CHEBI:17578 ! has primary input toluene +relationship: RO:0004009 CHEBI:17578 ! has primary input toluene created_by: tt creation_date: 2012-10-01T18:38:32Z @@ -120865,8 +120365,8 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a formic acid stimulus." [GOC:mengo_curators, GOC:TermGenie] is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:15740 ! formate -relationship: has_primary_input CHEBI:15740 ! formate +intersection_of: RO:0004009 CHEBI:15740 ! has primary input formate +relationship: RO:0004009 CHEBI:15740 ! has primary input formate created_by: tt creation_date: 2012-10-01T18:43:05Z @@ -120878,11 +120378,11 @@ def: "Any process that modulates the frequency, rate or extent of toluene catabo synonym: "regulation of toluene breakdown" EXACT [GOC:TermGenie] synonym: "regulation of toluene catabolism" EXACT [GOC:TermGenie] synonym: "regulation of toluene degradation" EXACT [GOC:TermGenie] -is_a: GO:0031329 ! regulation of cellular catabolic process +is_a: GO:0009894 ! regulation of catabolic process is_a: GO:1901437 ! regulation of toluene metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042203 ! toluene catabolic process -relationship: regulates GO:0042203 ! toluene catabolic process +intersection_of: RO:0002211 GO:0042203 ! regulates (processual) toluene catabolic process +relationship: RO:0002211 GO:0042203 ! regulates (processual) toluene catabolic process created_by: tt creation_date: 2012-10-01T21:12:31Z @@ -120910,12 +120410,12 @@ synonym: "inhibition of toluene degradation" EXACT [GOC:TermGenie] synonym: "negative regulation of toluene breakdown" EXACT [GOC:TermGenie] synonym: "negative regulation of toluene catabolism" EXACT [GOC:TermGenie] synonym: "negative regulation of toluene degradation" EXACT [GOC:TermGenie] -is_a: GO:0031330 ! negative regulation of cellular catabolic process +is_a: GO:0009895 ! negative regulation of catabolic process is_a: GO:1901434 ! regulation of toluene catabolic process is_a: GO:1901438 ! negative regulation of toluene metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042203 ! toluene catabolic process -relationship: negatively_regulates GO:0042203 ! toluene catabolic process +intersection_of: RO:0002212 GO:0042203 ! negatively regulates toluene catabolic process +relationship: RO:0002212 GO:0042203 ! negatively regulates toluene catabolic process created_by: tt creation_date: 2012-10-01T21:13:41Z @@ -120943,12 +120443,12 @@ synonym: "upregulation of toluene breakdown" EXACT [GOC:TermGenie] synonym: "upregulation of toluene catabolic process" EXACT [GOC:TermGenie] synonym: "upregulation of toluene catabolism" EXACT [GOC:TermGenie] synonym: "upregulation of toluene degradation" EXACT [GOC:TermGenie] -is_a: GO:0031331 ! positive regulation of cellular catabolic process +is_a: GO:0009896 ! positive regulation of catabolic process is_a: GO:1901434 ! regulation of toluene catabolic process is_a: GO:1901439 ! positive regulation of toluene metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042203 ! toluene catabolic process -relationship: positively_regulates GO:0042203 ! toluene catabolic process +intersection_of: RO:0002213 GO:0042203 ! positively regulates toluene catabolic process +relationship: RO:0002213 GO:0042203 ! positively regulates toluene catabolic process created_by: tt creation_date: 2012-10-01T21:13:57Z @@ -120962,8 +120462,8 @@ synonym: "regulation of methylbenzene metabolism" EXACT [GOC:TermGenie] synonym: "regulation of toluene metabolism" EXACT [GOC:TermGenie] is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0018970 ! toluene metabolic process -relationship: regulates GO:0018970 ! toluene metabolic process +intersection_of: RO:0002211 GO:0018970 ! regulates (processual) toluene metabolic process +relationship: RO:0002211 GO:0018970 ! regulates (processual) toluene metabolic process created_by: tt creation_date: 2012-10-01T21:17:41Z @@ -120994,8 +120494,8 @@ synonym: "negative regulation of toluene metabolism" EXACT [GOC:TermGenie] is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:1901437 ! regulation of toluene metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0018970 ! toluene metabolic process -relationship: negatively_regulates GO:0018970 ! toluene metabolic process +intersection_of: RO:0002212 GO:0018970 ! negatively regulates toluene metabolic process +relationship: RO:0002212 GO:0018970 ! negatively regulates toluene metabolic process created_by: tt creation_date: 2012-10-01T21:18:50Z @@ -121026,8 +120526,8 @@ synonym: "upregulation of toluene metabolism" EXACT [GOC:TermGenie] is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:1901437 ! regulation of toluene metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0018970 ! toluene metabolic process -relationship: positively_regulates GO:0018970 ! toluene metabolic process +intersection_of: RO:0002213 GO:0018970 ! positively regulates toluene metabolic process +relationship: RO:0002213 GO:0018970 ! positively regulates toluene metabolic process created_by: tt creation_date: 2012-10-01T21:19:08Z @@ -121038,8 +120538,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of response to benzene." [GOC:mengo_curators, GOC:TermGenie] is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1901423 ! response to benzene -relationship: regulates GO:1901423 ! response to benzene +intersection_of: RO:0002211 GO:1901423 ! regulates (processual) response to benzene +relationship: RO:0002211 GO:1901423 ! regulates (processual) response to benzene created_by: tt creation_date: 2012-10-02T14:19:10Z @@ -121055,8 +120555,8 @@ synonym: "inhibition of response to benzene" NARROW [GOC:TermGenie] is_a: GO:0048585 ! negative regulation of response to stimulus is_a: GO:1901451 ! regulation of response to benzene intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1901423 ! response to benzene -relationship: negatively_regulates GO:1901423 ! response to benzene +intersection_of: RO:0002212 GO:1901423 ! negatively regulates response to benzene +relationship: RO:0002212 GO:1901423 ! negatively regulates response to benzene created_by: tt creation_date: 2012-10-02T14:20:23Z @@ -121072,8 +120572,8 @@ synonym: "upregulation of response to benzene" EXACT [GOC:TermGenie] is_a: GO:0048584 ! positive regulation of response to stimulus is_a: GO:1901451 ! regulation of response to benzene intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1901423 ! response to benzene -relationship: positively_regulates GO:1901423 ! response to benzene +intersection_of: RO:0002213 GO:1901423 ! positively regulates response to benzene +relationship: RO:0002213 GO:1901423 ! positively regulates response to benzene created_by: tt creation_date: 2012-10-02T14:20:41Z @@ -121084,8 +120584,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of response to toluene." [GOC:mengo_curators, GOC:TermGenie] is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1901424 ! response to toluene -relationship: regulates GO:1901424 ! response to toluene +intersection_of: RO:0002211 GO:1901424 ! regulates (processual) response to toluene +relationship: RO:0002211 GO:1901424 ! regulates (processual) response to toluene created_by: tt creation_date: 2012-10-02T14:22:17Z @@ -121101,8 +120601,8 @@ synonym: "inhibition of response to toluene" NARROW [GOC:TermGenie] is_a: GO:0048585 ! negative regulation of response to stimulus is_a: GO:1901454 ! regulation of response to toluene intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1901424 ! response to toluene -relationship: negatively_regulates GO:1901424 ! response to toluene +intersection_of: RO:0002212 GO:1901424 ! negatively regulates response to toluene +relationship: RO:0002212 GO:1901424 ! negatively regulates response to toluene created_by: tt creation_date: 2012-10-02T14:23:28Z @@ -121118,8 +120618,8 @@ synonym: "upregulation of response to toluene" EXACT [GOC:TermGenie] is_a: GO:0048584 ! positive regulation of response to stimulus is_a: GO:1901454 ! regulation of response to toluene intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1901424 ! response to toluene -relationship: positively_regulates GO:1901424 ! response to toluene +intersection_of: RO:0002213 GO:1901424 ! positively regulates response to toluene +relationship: RO:0002213 GO:1901424 ! positively regulates response to toluene created_by: tt creation_date: 2012-10-02T14:23:45Z @@ -121130,8 +120630,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of response to acetate." [GOC:mengo_curators, GOC:TermGenie] is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0010034 ! response to acetate -relationship: regulates GO:0010034 ! response to acetate +intersection_of: RO:0002211 GO:0010034 ! regulates (processual) response to acetate +relationship: RO:0002211 GO:0010034 ! regulates (processual) response to acetate created_by: tt creation_date: 2012-10-02T14:25:06Z @@ -121147,8 +120647,8 @@ synonym: "inhibition of response to acetate" NARROW [GOC:TermGenie] is_a: GO:0048585 ! negative regulation of response to stimulus is_a: GO:1901457 ! regulation of response to acetate intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0010034 ! response to acetate -relationship: negatively_regulates GO:0010034 ! response to acetate +intersection_of: RO:0002212 GO:0010034 ! negatively regulates response to acetate +relationship: RO:0002212 GO:0010034 ! negatively regulates response to acetate created_by: tt creation_date: 2012-10-02T14:26:15Z @@ -121164,8 +120664,8 @@ synonym: "upregulation of response to acetate" EXACT [GOC:TermGenie] is_a: GO:0048584 ! positive regulation of response to stimulus is_a: GO:1901457 ! regulation of response to acetate intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0010034 ! response to acetate -relationship: positively_regulates GO:0010034 ! response to acetate +intersection_of: RO:0002213 GO:0010034 ! positively regulates response to acetate +relationship: RO:0002213 GO:0010034 ! positively regulates response to acetate created_by: tt creation_date: 2012-10-02T14:26:34Z @@ -121176,8 +120676,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of response to formic acid." [GOC:mengo_curators, GOC:TermGenie] is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1901425 ! response to formic acid -relationship: regulates GO:1901425 ! response to formic acid +intersection_of: RO:0002211 GO:1901425 ! regulates (processual) response to formic acid +relationship: RO:0002211 GO:1901425 ! regulates (processual) response to formic acid created_by: tt creation_date: 2012-10-02T14:27:54Z @@ -121193,8 +120693,8 @@ synonym: "inhibition of response to formic acid" NARROW [GOC:TermGenie] is_a: GO:0048585 ! negative regulation of response to stimulus is_a: GO:1901460 ! regulation of response to formic acid intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1901425 ! response to formic acid -relationship: negatively_regulates GO:1901425 ! response to formic acid +intersection_of: RO:0002212 GO:1901425 ! negatively regulates response to formic acid +relationship: RO:0002212 GO:1901425 ! negatively regulates response to formic acid created_by: tt creation_date: 2012-10-02T14:29:02Z @@ -121210,8 +120710,8 @@ synonym: "upregulation of response to formic acid" EXACT [GOC:TermGenie] is_a: GO:0048584 ! positive regulation of response to stimulus is_a: GO:1901460 ! regulation of response to formic acid intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1901425 ! response to formic acid -relationship: positively_regulates GO:1901425 ! response to formic acid +intersection_of: RO:0002213 GO:1901425 ! positively regulates response to formic acid +relationship: RO:0002213 GO:1901425 ! positively regulates response to formic acid created_by: tt creation_date: 2012-10-02T14:29:20Z @@ -121227,8 +120727,8 @@ synonym: "regulation of tetrapyrrole synthesis" EXACT [GOC:TermGenie] is_a: GO:0009889 ! regulation of biosynthetic process is_a: GO:1901401 ! regulation of tetrapyrrole metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0033014 ! tetrapyrrole biosynthetic process -relationship: regulates GO:0033014 ! tetrapyrrole biosynthetic process +intersection_of: RO:0002211 GO:0033014 ! regulates (processual) tetrapyrrole biosynthetic process +relationship: RO:0002211 GO:0033014 ! regulates (processual) tetrapyrrole biosynthetic process created_by: tt creation_date: 2012-10-02T14:34:14Z @@ -121265,8 +120765,8 @@ is_a: GO:0009890 ! negative regulation of biosynthetic process is_a: GO:1901402 ! negative regulation of tetrapyrrole metabolic process is_a: GO:1901463 ! regulation of tetrapyrrole biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0033014 ! tetrapyrrole biosynthetic process -relationship: negatively_regulates GO:0033014 ! tetrapyrrole biosynthetic process +intersection_of: RO:0002212 GO:0033014 ! negatively regulates tetrapyrrole biosynthetic process +relationship: RO:0002212 GO:0033014 ! negatively regulates tetrapyrrole biosynthetic process created_by: tt creation_date: 2012-10-02T14:35:26Z @@ -121303,8 +120803,8 @@ is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:1901403 ! positive regulation of tetrapyrrole metabolic process is_a: GO:1901463 ! regulation of tetrapyrrole biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0033014 ! tetrapyrrole biosynthetic process -relationship: positively_regulates GO:0033014 ! tetrapyrrole biosynthetic process +intersection_of: RO:0002213 GO:0033014 ! positively regulates tetrapyrrole biosynthetic process +relationship: RO:0002213 GO:0033014 ! positively regulates tetrapyrrole biosynthetic process created_by: tt creation_date: 2012-10-02T14:35:43Z @@ -121315,8 +120815,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of Golgi calcium ion export." [GOC:TermGenie] is_a: GO:0051279 ! regulation of release of sequestered calcium ion into cytosol intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061454 ! release of sequestered calcium ion into cytosol by Golgi -relationship: regulates GO:0061454 ! release of sequestered calcium ion into cytosol by Golgi +intersection_of: RO:0002211 GO:0061454 ! regulates (processual) release of sequestered calcium ion into cytosol by Golgi +relationship: RO:0002211 GO:0061454 ! regulates (processual) release of sequestered calcium ion into cytosol by Golgi created_by: al creation_date: 2012-10-03T07:26:03Z @@ -121329,9 +120829,9 @@ def: "Enables the directed movement of azoles, heterocyclic compound found in ma synonym: "azole transporter activity" RELATED [] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:68452 ! azole -relationship: has_primary_input CHEBI:68452 ! azole +intersection_of: RO:0004009 CHEBI:68452 ! has primary input azole relationship: part_of GO:0045117 ! azole transmembrane transport +relationship: RO:0004009 CHEBI:68452 ! has primary input azole created_by: tb creation_date: 2012-10-04T20:00:27Z @@ -121343,8 +120843,8 @@ def: "Any process that modulates the frequency, rate or extent of lymphangiogene synonym: "regulation of lymph vessel formation" EXACT [GOC:TermGenie] is_a: GO:0022603 ! regulation of anatomical structure morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001946 ! lymphangiogenesis -relationship: regulates GO:0001946 ! lymphangiogenesis +intersection_of: RO:0002211 GO:0001946 ! regulates (processual) lymphangiogenesis +relationship: RO:0002211 GO:0001946 ! regulates (processual) lymphangiogenesis created_by: dph creation_date: 2012-10-15T13:08:17Z @@ -121365,8 +120865,8 @@ synonym: "negative regulation of lymph vessel formation" EXACT [GOC:TermGenie] is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:1901490 ! regulation of lymphangiogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001946 ! lymphangiogenesis -relationship: negatively_regulates GO:0001946 ! lymphangiogenesis +intersection_of: RO:0002212 GO:0001946 ! negatively regulates lymphangiogenesis +relationship: RO:0002212 GO:0001946 ! negatively regulates lymphangiogenesis created_by: dph creation_date: 2012-10-15T13:08:21Z @@ -121387,8 +120887,8 @@ synonym: "upregulation of lymphangiogenesis" EXACT [GOC:TermGenie] is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:1901490 ! regulation of lymphangiogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001946 ! lymphangiogenesis -relationship: positively_regulates GO:0001946 ! lymphangiogenesis +intersection_of: RO:0002213 GO:0001946 ! positively regulates lymphangiogenesis +relationship: RO:0002213 GO:0001946 ! positively regulates lymphangiogenesis created_by: dph creation_date: 2012-10-15T13:08:25Z @@ -121400,9 +120900,9 @@ def: "Enables the transfer of carbohydrate derivative from one side of a membran synonym: "carbohydrate derivative transporter activity" RELATED [] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:63299 ! carbohydrate derivative -relationship: has_primary_input CHEBI:63299 ! carbohydrate derivative -relationship: part_of GO:1901264 ! carbohydrate derivative transport +intersection_of: RO:0004009 CHEBI:63299 ! has primary input carbohydrate derivative +relationship: part_of GO:1901264 {source="GO_REF:0000090"} ! carbohydrate derivative transport +relationship: RO:0004009 CHEBI:63299 ! has primary input carbohydrate derivative created_by: pr creation_date: 2012-10-17T10:31:22Z @@ -121413,8 +120913,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of endothelial tube morphogenesis." [GOC:dph, GOC:TermGenie] is_a: GO:1905330 ! regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061154 ! endothelial tube morphogenesis -relationship: regulates GO:0061154 ! endothelial tube morphogenesis +intersection_of: RO:0002211 GO:0061154 ! regulates (processual) endothelial tube morphogenesis +relationship: RO:0002211 GO:0061154 ! regulates (processual) endothelial tube morphogenesis created_by: dph creation_date: 2012-10-17T14:30:40Z @@ -121428,8 +120928,8 @@ synonym: "regulation of haemopoietic progenitor cell differentiation" EXACT [GOC synonym: "regulation of hemopoietic progenitor cell differentiation" EXACT [] is_a: GO:0045595 ! regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002244 ! hematopoietic progenitor cell differentiation -relationship: regulates GO:0002244 ! hematopoietic progenitor cell differentiation +intersection_of: RO:0002211 GO:0002244 ! regulates (processual) hematopoietic progenitor cell differentiation +relationship: RO:0002211 GO:0002244 ! regulates (processual) hematopoietic progenitor cell differentiation created_by: vk creation_date: 2012-10-24T11:23:01Z @@ -121460,8 +120960,8 @@ synonym: "negative regulation of hemopoietic progenitor cell differentiation" EX is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:1901532 ! regulation of hematopoietic progenitor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002244 ! hematopoietic progenitor cell differentiation -relationship: negatively_regulates GO:0002244 ! hematopoietic progenitor cell differentiation +intersection_of: RO:0002212 GO:0002244 ! negatively regulates hematopoietic progenitor cell differentiation +relationship: RO:0002212 GO:0002244 ! negatively regulates hematopoietic progenitor cell differentiation created_by: vk creation_date: 2012-10-24T11:23:06Z @@ -121492,8 +120992,8 @@ synonym: "upregulation of hemopoietic progenitor cell differentiation" EXACT [GO is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:1901532 ! regulation of hematopoietic progenitor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002244 ! hematopoietic progenitor cell differentiation -relationship: positively_regulates GO:0002244 ! hematopoietic progenitor cell differentiation +intersection_of: RO:0002213 GO:0002244 ! positively regulates hematopoietic progenitor cell differentiation +relationship: RO:0002213 GO:0002244 ! positively regulates hematopoietic progenitor cell differentiation created_by: vk creation_date: 2012-10-24T11:23:14Z @@ -121505,9 +121005,9 @@ def: "Any process that modulates the frequency, rate or extent of endothelial ce is_a: GO:0045601 ! regulation of endothelial cell differentiation is_a: GO:0060284 ! regulation of cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001885 ! endothelial cell development -relationship: regulates GO:0001885 ! endothelial cell development -relationship: regulates GO:0045446 ! endothelial cell differentiation +intersection_of: RO:0002211 GO:0001885 ! regulates (processual) endothelial cell development +relationship: RO:0002211 GO:0001885 ! regulates (processual) endothelial cell development +relationship: RO:0002211 GO:0045446 ! regulates (processual) endothelial cell differentiation created_by: pr creation_date: 2012-10-30T12:59:50Z @@ -121524,9 +121024,9 @@ is_a: GO:0010721 ! negative regulation of cell development is_a: GO:0045602 ! negative regulation of endothelial cell differentiation is_a: GO:1901550 ! regulation of endothelial cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001885 ! endothelial cell development -relationship: negatively_regulates GO:0001885 ! endothelial cell development -relationship: negatively_regulates GO:0045446 ! endothelial cell differentiation +intersection_of: RO:0002212 GO:0001885 ! negatively regulates endothelial cell development +relationship: RO:0002212 GO:0001885 ! negatively regulates endothelial cell development +relationship: RO:0002212 GO:0045446 ! negatively regulates endothelial cell differentiation created_by: pr creation_date: 2012-10-30T12:59:54Z @@ -121542,63 +121042,11 @@ synonym: "upregulation of endothelial cell development" EXACT [GOC:TermGenie] is_a: GO:0010720 ! positive regulation of cell development is_a: GO:1901550 ! regulation of endothelial cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001885 ! endothelial cell development -relationship: positively_regulates GO:0001885 ! endothelial cell development +intersection_of: RO:0002213 GO:0001885 ! positively regulates endothelial cell development +relationship: RO:0002213 GO:0001885 ! positively regulates endothelial cell development created_by: pr creation_date: 2012-10-30T12:59:58Z -[Term] -id: GO:1901564 -name: organonitrogen compound metabolic process -namespace: biological_process -def: "The chemical reactions and pathways involving organonitrogen compound." [GOC:pr, GOC:TermGenie] -subset: gocheck_do_not_annotate -synonym: "organonitrogen compound metabolism" EXACT [GOC:TermGenie] -is_a: GO:0008152 ! metabolic process -intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:35352 ! organonitrogen compound -relationship: has_primary_input_or_output CHEBI:35352 ! organonitrogen compound -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI -created_by: pr -creation_date: 2012-11-04T15:17:52Z - -[Term] -id: GO:1901565 -name: organonitrogen compound catabolic process -namespace: biological_process -def: "The chemical reactions and pathways resulting in the breakdown of organonitrogen compound." [GOC:pr, GOC:TermGenie] -subset: gocheck_do_not_annotate -synonym: "organonitrogen compound breakdown" EXACT [GOC:TermGenie] -synonym: "organonitrogen compound catabolism" EXACT [GOC:TermGenie] -synonym: "organonitrogen compound degradation" EXACT [GOC:TermGenie] -is_a: GO:0009056 ! catabolic process -is_a: GO:1901564 ! organonitrogen compound metabolic process -intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:35352 ! organonitrogen compound -relationship: has_primary_input CHEBI:35352 ! organonitrogen compound -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI -created_by: pr -creation_date: 2012-11-04T15:17:56Z - -[Term] -id: GO:1901566 -name: organonitrogen compound biosynthetic process -namespace: biological_process -def: "The chemical reactions and pathways resulting in the formation of organonitrogen compound." [GOC:pr, GOC:TermGenie] -subset: gocheck_do_not_annotate -synonym: "organonitrogen compound anabolism" EXACT [GOC:TermGenie] -synonym: "organonitrogen compound biosynthesis" EXACT [GOC:TermGenie] -synonym: "organonitrogen compound formation" EXACT [GOC:TermGenie] -synonym: "organonitrogen compound synthesis" EXACT [GOC:TermGenie] -is_a: GO:0009058 ! biosynthetic process -is_a: GO:1901564 ! organonitrogen compound metabolic process -intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:35352 ! organonitrogen compound -relationship: has_primary_output CHEBI:35352 ! organonitrogen compound -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI -created_by: pr -creation_date: 2012-11-04T15:18:00Z - [Term] id: GO:1901577 name: regulation of alkane biosynthetic process @@ -121608,10 +121056,10 @@ synonym: "regulation of alkane anabolism" EXACT [GOC:TermGenie] synonym: "regulation of alkane biosynthesis" EXACT [GOC:TermGenie] synonym: "regulation of alkane formation" EXACT [GOC:TermGenie] synonym: "regulation of alkane synthesis" EXACT [GOC:TermGenie] -is_a: GO:0031326 ! regulation of cellular biosynthetic process +is_a: GO:0009889 ! regulation of biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0043447 ! alkane biosynthetic process -relationship: regulates GO:0043447 ! alkane biosynthetic process +intersection_of: RO:0002211 GO:0043447 ! regulates (processual) alkane biosynthetic process +relationship: RO:0002211 GO:0043447 ! regulates (processual) alkane biosynthetic process created_by: dhl creation_date: 2012-11-05T21:54:06Z @@ -121644,11 +121092,11 @@ synonym: "negative regulation of alkane anabolism" EXACT [GOC:TermGenie] synonym: "negative regulation of alkane biosynthesis" EXACT [GOC:TermGenie] synonym: "negative regulation of alkane formation" EXACT [GOC:TermGenie] synonym: "negative regulation of alkane synthesis" EXACT [GOC:TermGenie] -is_a: GO:0031327 ! negative regulation of cellular biosynthetic process +is_a: GO:0009890 ! negative regulation of biosynthetic process is_a: GO:1901577 ! regulation of alkane biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0043447 ! alkane biosynthetic process -relationship: negatively_regulates GO:0043447 ! alkane biosynthetic process +intersection_of: RO:0002212 GO:0043447 ! negatively regulates alkane biosynthetic process +relationship: RO:0002212 GO:0043447 ! negatively regulates alkane biosynthetic process created_by: dhl creation_date: 2012-11-05T21:54:11Z @@ -121681,11 +121129,11 @@ synonym: "upregulation of alkane biosynthesis" EXACT [GOC:TermGenie] synonym: "upregulation of alkane biosynthetic process" EXACT [GOC:TermGenie] synonym: "upregulation of alkane formation" EXACT [GOC:TermGenie] synonym: "upregulation of alkane synthesis" EXACT [GOC:TermGenie] -is_a: GO:0031328 ! positive regulation of cellular biosynthetic process +is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:1901577 ! regulation of alkane biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0043447 ! alkane biosynthetic process -relationship: positively_regulates GO:0043447 ! alkane biosynthetic process +intersection_of: RO:0002213 GO:0043447 ! positively regulates alkane biosynthetic process +relationship: RO:0002213 GO:0043447 ! positively regulates alkane biosynthetic process created_by: dhl creation_date: 2012-11-05T21:54:19Z @@ -121730,8 +121178,8 @@ def: "The chemical reactions and pathways involving an alpha-amino acid." [GOC:T synonym: "alpha-amino acid metabolism" EXACT [GOC:TermGenie] is_a: GO:0006520 ! amino acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:78608 ! alpha-amino acid zwitterion -relationship: has_primary_input_or_output CHEBI:78608 ! alpha-amino acid zwitterion +intersection_of: RO:0004007 CHEBI:78608 ! has primary input or output alpha-amino-acid zwitterion +relationship: RO:0004007 CHEBI:78608 ! has primary input or output alpha-amino-acid zwitterion created_by: tb creation_date: 2012-11-08T17:39:50Z @@ -121746,8 +121194,8 @@ synonym: "alpha-amino acid degradation" EXACT [GOC:TermGenie] is_a: GO:0009063 ! amino acid catabolic process is_a: GO:1901605 ! alpha-amino acid metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:78608 ! alpha-amino acid zwitterion -relationship: has_primary_input CHEBI:78608 ! alpha-amino acid zwitterion +intersection_of: RO:0004009 CHEBI:78608 ! has primary input alpha-amino-acid zwitterion +relationship: RO:0004009 CHEBI:78608 ! has primary input alpha-amino-acid zwitterion created_by: tb creation_date: 2012-11-08T17:39:54Z @@ -121763,8 +121211,8 @@ synonym: "alpha-amino acid synthesis" EXACT [GOC:TermGenie] is_a: GO:0008652 ! amino acid biosynthetic process is_a: GO:1901605 ! alpha-amino acid metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:78608 ! alpha-amino acid zwitterion -relationship: has_primary_output CHEBI:78608 ! alpha-amino acid zwitterion +intersection_of: RO:0004008 CHEBI:78608 ! has primary output alpha-amino-acid zwitterion +relationship: RO:0004008 CHEBI:78608 ! has primary output alpha-amino-acid zwitterion created_by: tb creation_date: 2012-11-08T17:39:58Z @@ -121776,8 +121224,8 @@ def: "Any process that modulates the frequency, rate or extent of vesicle transp synonym: "regulation of microtubule-based vesicle localization" EXACT [GOC:TermGenie] is_a: GO:1902513 ! regulation of organelle transport along microtubule intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0047496 ! vesicle transport along microtubule -relationship: regulates GO:0047496 ! vesicle transport along microtubule +intersection_of: RO:0002211 GO:0047496 ! regulates (processual) vesicle transport along microtubule +relationship: RO:0002211 GO:0047496 ! regulates (processual) vesicle transport along microtubule created_by: hjd creation_date: 2012-11-08T21:49:44Z @@ -121798,8 +121246,8 @@ synonym: "negative regulation of microtubule-based vesicle localization" EXACT [ is_a: GO:0032387 ! negative regulation of intracellular transport is_a: GO:1901608 ! regulation of vesicle transport along microtubule intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0047496 ! vesicle transport along microtubule -relationship: negatively_regulates GO:0047496 ! vesicle transport along microtubule +intersection_of: RO:0002212 GO:0047496 ! negatively regulates vesicle transport along microtubule +relationship: RO:0002212 GO:0047496 ! negatively regulates vesicle transport along microtubule created_by: hjd creation_date: 2012-11-08T21:49:48Z @@ -121820,8 +121268,8 @@ synonym: "upregulation of vesicle transport along microtubule" EXACT [GOC:TermGe is_a: GO:0032388 ! positive regulation of intracellular transport is_a: GO:1901608 ! regulation of vesicle transport along microtubule intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0047496 ! vesicle transport along microtubule -relationship: positively_regulates GO:0047496 ! vesicle transport along microtubule +intersection_of: RO:0002213 GO:0047496 ! positively regulates vesicle transport along microtubule +relationship: RO:0002213 GO:0047496 ! positively regulates vesicle transport along microtubule created_by: hjd creation_date: 2012-11-08T21:49:53Z @@ -121833,8 +121281,8 @@ def: "The chemical reactions and pathways involving organic hydroxy compound." [ synonym: "organic hydroxy compound metabolism" EXACT [GOC:TermGenie] is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:33822 ! organic hydroxy compound -relationship: has_primary_input_or_output CHEBI:33822 ! organic hydroxy compound +intersection_of: RO:0004007 CHEBI:33822 ! has primary input or output organic hydroxy compound +relationship: RO:0004007 CHEBI:33822 ! has primary input or output organic hydroxy compound created_by: pr creation_date: 2012-11-13T12:54:27Z @@ -121849,8 +121297,8 @@ synonym: "organic hydroxy compound degradation" EXACT [GOC:TermGenie] is_a: GO:0009056 ! catabolic process is_a: GO:1901615 ! organic hydroxy compound metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:33822 ! organic hydroxy compound -relationship: has_primary_input CHEBI:33822 ! organic hydroxy compound +intersection_of: RO:0004009 CHEBI:33822 ! has primary input organic hydroxy compound +relationship: RO:0004009 CHEBI:33822 ! has primary input organic hydroxy compound created_by: pr creation_date: 2012-11-13T12:54:31Z @@ -121866,8 +121314,8 @@ synonym: "organic hydroxy compound synthesis" EXACT [GOC:TermGenie] is_a: GO:0009058 ! biosynthetic process is_a: GO:1901615 ! organic hydroxy compound metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:33822 ! organic hydroxy compound -relationship: has_primary_output CHEBI:33822 ! organic hydroxy compound +intersection_of: RO:0004008 CHEBI:33822 ! has primary output organic hydroxy compound +relationship: RO:0004008 CHEBI:33822 ! has primary output organic hydroxy compound created_by: pr creation_date: 2012-11-13T12:54:36Z @@ -121878,8 +121326,8 @@ namespace: molecular_function def: "Enables the transfer of organic hydroxy compound from one side of a membrane to the other." [GOC:pr, GOC:TermGenie] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:33822 ! organic hydroxy compound -relationship: has_primary_input CHEBI:33822 ! organic hydroxy compound +intersection_of: RO:0004009 CHEBI:33822 ! has primary input organic hydroxy compound +relationship: RO:0004009 CHEBI:33822 ! has primary input organic hydroxy compound created_by: pr creation_date: 2012-11-13T12:59:01Z @@ -121891,8 +121339,8 @@ def: "Any process that modulates the frequency, rate or extent of lymphocyte che is_a: GO:0002688 ! regulation of leukocyte chemotaxis is_a: GO:2000401 ! regulation of lymphocyte migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048247 ! lymphocyte chemotaxis -relationship: regulates GO:0048247 ! lymphocyte chemotaxis +intersection_of: RO:0002211 GO:0048247 ! regulates (processual) lymphocyte chemotaxis +relationship: RO:0002211 GO:0048247 ! regulates (processual) lymphocyte chemotaxis created_by: tb creation_date: 2012-11-13T23:03:23Z @@ -121909,8 +121357,8 @@ is_a: GO:0002689 ! negative regulation of leukocyte chemotaxis is_a: GO:1901623 ! regulation of lymphocyte chemotaxis is_a: GO:2000402 ! negative regulation of lymphocyte migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048247 ! lymphocyte chemotaxis -relationship: negatively_regulates GO:0048247 ! lymphocyte chemotaxis +intersection_of: RO:0002212 GO:0048247 ! negatively regulates lymphocyte chemotaxis +relationship: RO:0002212 GO:0048247 ! negatively regulates lymphocyte chemotaxis created_by: tb creation_date: 2012-11-13T23:03:28Z @@ -121923,8 +121371,8 @@ synonym: "regulation of post-synaptic membrane organization" EXACT [] synonym: "regulation of postsynaptic membrane organisation" EXACT [GOC:TermGenie] is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001941 ! postsynaptic membrane organization -relationship: regulates GO:0001941 ! postsynaptic membrane organization +intersection_of: RO:0002211 GO:0001941 ! regulates (processual) postsynaptic membrane organization +relationship: RO:0002211 GO:0001941 ! regulates (processual) postsynaptic membrane organization created_by: ans creation_date: 2012-11-15T11:40:15Z @@ -121946,9 +121394,9 @@ synonym: "negative regulation of postsynaptic membrane organisation" EXACT [GOC: is_a: GO:1901626 ! regulation of postsynaptic membrane organization is_a: GO:1905809 ! negative regulation of synapse organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001941 ! postsynaptic membrane organization -relationship: negatively_regulates GO:0001941 ! postsynaptic membrane organization -relationship: negatively_regulates GO:0050808 ! synapse organization +intersection_of: RO:0002212 GO:0001941 ! negatively regulates postsynaptic membrane organization +relationship: RO:0002212 GO:0001941 ! negatively regulates postsynaptic membrane organization +relationship: RO:0002212 GO:0050808 ! negatively regulates synapse organization created_by: ans creation_date: 2012-11-15T11:40:20Z @@ -121970,8 +121418,8 @@ synonym: "upregulation of postsynaptic membrane organization" EXACT [GOC:TermGen is_a: GO:0051130 ! positive regulation of cellular component organization is_a: GO:1901626 ! regulation of postsynaptic membrane organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001941 ! postsynaptic membrane organization -relationship: positively_regulates GO:0001941 ! postsynaptic membrane organization +intersection_of: RO:0002213 GO:0001941 ! positively regulates postsynaptic membrane organization +relationship: RO:0002213 GO:0001941 ! positively regulates postsynaptic membrane organization created_by: ans creation_date: 2012-11-15T11:40:24Z @@ -121985,10 +121433,10 @@ synonym: "nucleoside membrane transport" EXACT [] is_a: GO:0015858 ! nucleoside transport is_a: GO:0055085 ! transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:33838 ! nucleoside -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:33838 ! nucleoside -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:33838 ! has primary input nucleoside +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:33838 ! has primary input nucleoside created_by: pr creation_date: 2012-11-16T13:32:01Z @@ -121999,8 +121447,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of synoviocyte proliferation." [GOC:TermGenie] is_a: GO:0050678 ! regulation of epithelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002941 ! synoviocyte proliferation -relationship: regulates GO:0002941 ! synoviocyte proliferation +intersection_of: RO:0002211 GO:0002941 ! regulates (processual) synoviocyte proliferation +relationship: RO:0002211 GO:0002941 ! regulates (processual) synoviocyte proliferation created_by: hjd creation_date: 2012-11-16T20:16:23Z @@ -122016,8 +121464,8 @@ synonym: "inhibition of synoviocyte proliferation" NARROW [GOC:TermGenie] is_a: GO:0050680 ! negative regulation of epithelial cell proliferation is_a: GO:1901645 ! regulation of synoviocyte proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002941 ! synoviocyte proliferation -relationship: negatively_regulates GO:0002941 ! synoviocyte proliferation +intersection_of: RO:0002212 GO:0002941 ! negatively regulates synoviocyte proliferation +relationship: RO:0002212 GO:0002941 ! negatively regulates synoviocyte proliferation created_by: hjd creation_date: 2012-11-16T20:16:27Z @@ -122033,8 +121481,8 @@ synonym: "upregulation of synoviocyte proliferation" EXACT [GOC:TermGenie] is_a: GO:0050679 ! positive regulation of epithelial cell proliferation is_a: GO:1901645 ! regulation of synoviocyte proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002941 ! synoviocyte proliferation -relationship: positively_regulates GO:0002941 ! synoviocyte proliferation +intersection_of: RO:0002213 GO:0002941 ! positively regulates synoviocyte proliferation +relationship: RO:0002213 GO:0002941 ! positively regulates synoviocyte proliferation created_by: hjd creation_date: 2012-11-16T20:16:32Z @@ -122045,8 +121493,8 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide stimulus." [GOC:pr, GOC:TermGenie] is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:60466 ! peptide zwitterion -relationship: has_primary_input CHEBI:60466 ! peptide zwitterion +intersection_of: RO:0004009 CHEBI:60466 ! has primary input peptide zwitterion +relationship: RO:0004009 CHEBI:60466 ! has primary input peptide zwitterion created_by: pr creation_date: 2012-11-20T09:45:15Z @@ -122058,8 +121506,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:0070887 ! cellular response to chemical stimulus is_a: GO:1901652 ! response to peptide intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:60466 ! peptide zwitterion -relationship: has_primary_input CHEBI:60466 ! peptide zwitterion +intersection_of: RO:0004009 CHEBI:60466 ! has primary input peptide zwitterion +relationship: RO:0004009 CHEBI:60466 ! has primary input peptide zwitterion created_by: pr creation_date: 2012-11-20T09:45:19Z @@ -122072,8 +121520,8 @@ def: "A response that results in a state of tolerance to ketone." [GOC:mengo_cur synonym: "process resulting in tolerance to ketone" NARROW [] is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:17087 ! ketone -relationship: has_primary_input CHEBI:17087 ! ketone +intersection_of: RO:0004009 CHEBI:17087 ! has primary input ketone +relationship: RO:0004009 CHEBI:17087 ! has primary input ketone created_by: pr creation_date: 2012-11-20T10:55:47Z @@ -122085,8 +121533,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:1901654 ! response to ketone is_a: GO:1901701 ! cellular response to oxygen-containing compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:17087 ! ketone -relationship: has_primary_input CHEBI:17087 ! ketone +intersection_of: RO:0004009 CHEBI:17087 ! has primary input ketone +relationship: RO:0004009 CHEBI:17087 ! has primary input ketone created_by: pr creation_date: 2012-11-20T10:55:51Z @@ -122098,8 +121546,8 @@ def: "The chemical reactions and pathways involving glycosyl compound." [GOC:pr, synonym: "glycosyl compound metabolism" EXACT [GOC:TermGenie] is_a: GO:1901135 ! carbohydrate derivative metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:63161 ! glycosyl compound -relationship: has_primary_input_or_output CHEBI:63161 ! glycosyl compound +intersection_of: RO:0004007 CHEBI:63161 ! has primary input or output glycosyl compound +relationship: RO:0004007 CHEBI:63161 ! has primary input or output glycosyl compound created_by: pr creation_date: 2012-11-20T14:24:07Z @@ -122114,8 +121562,8 @@ synonym: "glycosyl compound degradation" EXACT [GOC:TermGenie] is_a: GO:1901136 ! carbohydrate derivative catabolic process is_a: GO:1901657 ! glycosyl compound metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:63161 ! glycosyl compound -relationship: has_primary_input CHEBI:63161 ! glycosyl compound +intersection_of: RO:0004009 CHEBI:63161 ! has primary input glycosyl compound +relationship: RO:0004009 CHEBI:63161 ! has primary input glycosyl compound created_by: pr creation_date: 2012-11-20T14:24:11Z @@ -122131,8 +121579,8 @@ synonym: "glycosyl compound synthesis" EXACT [GOC:TermGenie] is_a: GO:1901137 ! carbohydrate derivative biosynthetic process is_a: GO:1901657 ! glycosyl compound metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:63161 ! glycosyl compound -relationship: has_primary_output CHEBI:63161 ! glycosyl compound +intersection_of: RO:0004008 CHEBI:63161 ! has primary output glycosyl compound +relationship: RO:0004008 CHEBI:63161 ! has primary output glycosyl compound created_by: pr creation_date: 2012-11-20T14:24:19Z @@ -122146,10 +121594,10 @@ synonym: "nucleotide membrane transport" EXACT [] is_a: GO:0006862 ! nucleotide transport is_a: GO:0055085 ! transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:36976 ! nucleotide -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:36976 ! nucleotide -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:36976 ! has primary input nucleotide +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:36976 ! has primary input nucleotide created_by: pr creation_date: 2012-11-22T15:43:23Z @@ -122161,8 +121609,8 @@ def: "Binding to a sulfur compound." [GOC:pr, GOC:TermGenie] synonym: "sulfur molecular entity binding" EXACT [] is_a: GO:0005488 ! binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:26835 ! sulfur molecular entity -relationship: has_primary_input CHEBI:26835 ! sulfur molecular entity +intersection_of: RO:0004009 CHEBI:26835 ! has primary input sulfur molecular entity +relationship: RO:0004009 CHEBI:26835 ! has primary input sulfur molecular entity created_by: pr creation_date: 2012-11-26T20:45:23Z @@ -122174,8 +121622,8 @@ def: "Enables the transfer of a sulfur compound from one side of a membrane to t synonym: "sulfur molecular entity transmembrane transporter activity" EXACT [] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:26835 ! sulfur molecular entity -relationship: has_primary_input CHEBI:26835 ! sulfur molecular entity +intersection_of: RO:0004009 CHEBI:26835 ! has primary input sulfur molecular entity +relationship: RO:0004009 CHEBI:26835 ! has primary input sulfur molecular entity created_by: pr creation_date: 2012-11-26T20:45:29Z @@ -122187,8 +121635,8 @@ def: "Binding to proton." [GOC:TermGenie] synonym: "hydrogen ion binding" EXACT [GOC:bm] is_a: GO:0043169 ! cation binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:15378 ! hydron -relationship: has_primary_input CHEBI:15378 ! hydron +intersection_of: RO:0004009 CHEBI:15378 ! has primary input hydron +relationship: RO:0004009 CHEBI:15378 ! has primary input hydron created_by: al creation_date: 2012-12-07T13:50:53Z @@ -122199,8 +121647,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of compound eye retinal cell apoptotic process." [GOC:mtg_apoptosis, GOC:TermGenie, PMID:12021768] is_a: GO:0042981 ! regulation of apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990010 ! compound eye retinal cell apoptotic process -relationship: regulates GO:1990010 ! compound eye retinal cell apoptotic process +intersection_of: RO:0002211 GO:1990010 ! regulates (processual) compound eye retinal cell apoptotic process +relationship: RO:0002211 GO:1990010 ! regulates (processual) compound eye retinal cell apoptotic process created_by: pr creation_date: 2012-12-12T10:28:35Z @@ -122216,8 +121664,8 @@ synonym: "inhibition of compound eye retinal cell apoptotic process" NARROW [GOC is_a: GO:0043066 ! negative regulation of apoptotic process is_a: GO:1901692 ! regulation of compound eye retinal cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990010 ! compound eye retinal cell apoptotic process -relationship: negatively_regulates GO:1990010 ! compound eye retinal cell apoptotic process +intersection_of: RO:0002212 GO:1990010 ! negatively regulates compound eye retinal cell apoptotic process +relationship: RO:0002212 GO:1990010 ! negatively regulates compound eye retinal cell apoptotic process created_by: pr creation_date: 2012-12-12T10:28:40Z @@ -122236,8 +121684,8 @@ is_a: GO:0043065 ! positive regulation of apoptotic process is_a: GO:0046672 ! positive regulation of compound eye retinal cell programmed cell death is_a: GO:1901692 ! regulation of compound eye retinal cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990010 ! compound eye retinal cell apoptotic process -relationship: positively_regulates GO:1990010 ! compound eye retinal cell apoptotic process +intersection_of: RO:0002213 GO:1990010 ! positively regulates compound eye retinal cell apoptotic process +relationship: RO:0002213 GO:1990010 ! positively regulates compound eye retinal cell apoptotic process created_by: pr creation_date: 2012-12-12T10:28:45Z @@ -122251,8 +121699,8 @@ subset: gocheck_do_not_annotate synonym: "response to nitrogen molecular entity" EXACT [] is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:51143 ! nitrogen molecular entity -relationship: has_primary_input CHEBI:51143 ! nitrogen molecular entity +intersection_of: RO:0004009 CHEBI:51143 ! has primary input nitrogen molecular entity +relationship: RO:0004009 CHEBI:51143 ! has primary input nitrogen molecular entity property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27194" xsd:anyURI created_by: pr creation_date: 2012-12-13T15:06:08Z @@ -122268,8 +121716,8 @@ synonym: "cellular response to nitrogen molecular entity" EXACT [] is_a: GO:0070887 ! cellular response to chemical stimulus is_a: GO:1901698 ! response to nitrogen compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:51143 ! nitrogen molecular entity -relationship: has_primary_input CHEBI:51143 ! nitrogen molecular entity +intersection_of: RO:0004009 CHEBI:51143 ! has primary input nitrogen molecular entity +relationship: RO:0004009 CHEBI:51143 ! has primary input nitrogen molecular entity property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27194" xsd:anyURI created_by: pr creation_date: 2012-12-13T15:06:13Z @@ -122284,8 +121732,8 @@ subset: gocheck_do_not_annotate synonym: "response to oxygen molecular entity" EXACT [] is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:25806 ! oxygen molecular entity -relationship: has_primary_input CHEBI:25806 ! oxygen molecular entity +intersection_of: RO:0004009 CHEBI:25806 ! has primary input oxygen molecular entity +relationship: RO:0004009 CHEBI:25806 ! has primary input oxygen molecular entity property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27194" xsd:anyURI created_by: pr creation_date: 2012-12-13T15:11:37Z @@ -122299,8 +121747,8 @@ synonym: "cellular response to oxygen molecular entity" EXACT [] is_a: GO:0070887 ! cellular response to chemical stimulus is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:25806 ! oxygen molecular entity -relationship: has_primary_input CHEBI:25806 ! oxygen molecular entity +intersection_of: RO:0004009 CHEBI:25806 ! has primary input oxygen molecular entity +relationship: RO:0004009 CHEBI:25806 ! has primary input oxygen molecular entity created_by: pr creation_date: 2012-12-13T15:11:42Z @@ -122311,8 +121759,8 @@ namespace: molecular_function def: "Enables the transfer of salt from one side of a membrane to the other." [GOC:pr, GOC:TermGenie] is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:24866 ! salt -relationship: has_primary_input CHEBI:24866 ! salt +intersection_of: RO:0004009 CHEBI:24866 ! has primary input salt +relationship: RO:0004009 CHEBI:24866 ! has primary input salt created_by: pr creation_date: 2012-12-13T15:14:47Z @@ -122342,11 +121790,12 @@ synonym: "regulation of GABA catabolism" EXACT [GOC:TermGenie] synonym: "regulation of gamma-aminobutyric acid breakdown" EXACT [GOC:TermGenie] synonym: "regulation of gamma-aminobutyric acid catabolism" EXACT [GOC:TermGenie] synonym: "regulation of gamma-aminobutyric acid degradation" EXACT [GOC:TermGenie] -is_a: GO:0006521 ! regulation of cellular amino acid metabolic process +is_a: GO:0006521 ! regulation of amino acid metabolic process is_a: GO:0009894 ! regulation of catabolic process +is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009450 ! gamma-aminobutyric acid catabolic process -relationship: regulates GO:0009450 ! gamma-aminobutyric acid catabolic process +intersection_of: RO:0002211 GO:0009450 ! regulates (processual) gamma-aminobutyric acid catabolic process +relationship: RO:0002211 GO:0009450 ! regulates (processual) gamma-aminobutyric acid catabolic process created_by: mcc creation_date: 2012-12-19T16:13:24Z @@ -122405,13 +121854,12 @@ synonym: "negative regulation of gamma-aminobutyric acid breakdown" EXACT [GOC:T synonym: "negative regulation of gamma-aminobutyric acid catabolism" EXACT [GOC:TermGenie] synonym: "negative regulation of gamma-aminobutyric acid degradation" EXACT [GOC:TermGenie] is_a: GO:0009895 ! negative regulation of catabolic process -is_a: GO:0031324 ! negative regulation of cellular metabolic process -is_a: GO:0045763 ! negative regulation of cellular amino acid metabolic process +is_a: GO:0045763 ! negative regulation of amino acid metabolic process is_a: GO:0062014 ! negative regulation of small molecule metabolic process is_a: GO:1901715 ! regulation of gamma-aminobutyric acid catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009450 ! gamma-aminobutyric acid catabolic process -relationship: negatively_regulates GO:0009450 ! gamma-aminobutyric acid catabolic process +intersection_of: RO:0002212 GO:0009450 ! negatively regulates gamma-aminobutyric acid catabolic process +relationship: RO:0002212 GO:0009450 ! negatively regulates gamma-aminobutyric acid catabolic process created_by: mcc creation_date: 2012-12-19T16:13:31Z @@ -122470,13 +121918,12 @@ synonym: "upregulation of gamma-aminobutyric acid catabolic process" EXACT [GOC: synonym: "upregulation of gamma-aminobutyric acid catabolism" EXACT [GOC:TermGenie] synonym: "upregulation of gamma-aminobutyric acid degradation" EXACT [GOC:TermGenie] is_a: GO:0009896 ! positive regulation of catabolic process -is_a: GO:0031325 ! positive regulation of cellular metabolic process is_a: GO:0045764 ! positive regulation of amino acid metabolic process is_a: GO:0062013 ! positive regulation of small molecule metabolic process is_a: GO:1901715 ! regulation of gamma-aminobutyric acid catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009450 ! gamma-aminobutyric acid catabolic process -relationship: positively_regulates GO:0009450 ! gamma-aminobutyric acid catabolic process +intersection_of: RO:0002213 GO:0009450 ! positively regulates gamma-aminobutyric acid catabolic process +relationship: RO:0002213 GO:0009450 ! positively regulates gamma-aminobutyric acid catabolic process created_by: mcc creation_date: 2012-12-19T16:13:36Z @@ -122487,8 +121934,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cell proliferation involved in kidney development." [GOC:TermGenie, PMID:18182616] is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072111 ! cell proliferation involved in kidney development -relationship: regulates GO:0072111 ! cell proliferation involved in kidney development +intersection_of: RO:0002211 GO:0072111 ! regulates (processual) cell proliferation involved in kidney development +relationship: RO:0002211 GO:0072111 ! regulates (processual) cell proliferation involved in kidney development created_by: krc creation_date: 2012-12-27T19:30:31Z @@ -122504,8 +121951,8 @@ synonym: "inhibition of cell proliferation involved in kidney development" NARRO is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:1901722 ! regulation of cell proliferation involved in kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0072111 ! cell proliferation involved in kidney development -relationship: negatively_regulates GO:0072111 ! cell proliferation involved in kidney development +intersection_of: RO:0002212 GO:0072111 ! negatively regulates cell proliferation involved in kidney development +relationship: RO:0002212 GO:0072111 ! negatively regulates cell proliferation involved in kidney development created_by: krc creation_date: 2012-12-27T19:30:35Z @@ -122521,8 +121968,8 @@ synonym: "upregulation of cell proliferation involved in kidney development" EXA is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:1901722 ! regulation of cell proliferation involved in kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0072111 ! cell proliferation involved in kidney development -relationship: positively_regulates GO:0072111 ! cell proliferation involved in kidney development +intersection_of: RO:0002213 GO:0072111 ! positively regulates cell proliferation involved in kidney development +relationship: RO:0002213 GO:0072111 ! positively regulates cell proliferation involved in kidney development created_by: krc creation_date: 2012-12-27T19:30:40Z @@ -122535,8 +121982,8 @@ synonym: "prephenate metabolism" EXACT [GOC:yaf] synonym: "prephenate(2-) metabolism" EXACT [GOC:TermGenie] is_a: GO:0043648 ! dicarboxylic acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:57852 ! prephenate(2-) -relationship: has_primary_input_or_output CHEBI:57852 ! prephenate(2-) +intersection_of: RO:0004007 CHEBI:57852 ! has primary input or output prephenate(2-) +relationship: RO:0004007 CHEBI:57852 ! has primary input or output prephenate(2-) created_by: yaf creation_date: 2013-01-14T10:13:49Z @@ -122554,8 +122001,8 @@ synonym: "prephenate(2-) degradation" EXACT [GOC:TermGenie] is_a: GO:0043649 ! dicarboxylic acid catabolic process is_a: GO:1901745 ! prephenate(2-) metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:57852 ! prephenate(2-) -relationship: has_primary_input CHEBI:57852 ! prephenate(2-) +intersection_of: RO:0004009 CHEBI:57852 ! has primary input prephenate(2-) +relationship: RO:0004009 CHEBI:57852 ! has primary input prephenate(2-) created_by: yaf creation_date: 2013-01-14T10:13:53Z @@ -122575,8 +122022,8 @@ synonym: "prephenate(2-) synthesis" EXACT [GOC:TermGenie] is_a: GO:0043650 ! dicarboxylic acid biosynthetic process is_a: GO:1901745 ! prephenate(2-) metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:57852 ! prephenate(2-) -relationship: has_primary_output CHEBI:57852 ! prephenate(2-) +intersection_of: RO:0004008 CHEBI:57852 ! has primary output prephenate(2-) +relationship: RO:0004008 CHEBI:57852 ! has primary output prephenate(2-) created_by: yaf creation_date: 2013-01-14T10:13:57Z @@ -122589,8 +122036,8 @@ synonym: "beta-carotene metabolism" EXACT [GOC:TermGenie] is_a: GO:0016116 ! carotenoid metabolic process is_a: GO:0016119 ! carotene metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:17579 ! beta-carotene -relationship: has_primary_input_or_output CHEBI:17579 ! beta-carotene +intersection_of: RO:0004007 CHEBI:17579 ! has primary input or output beta-carotene +relationship: RO:0004007 CHEBI:17579 ! has primary input or output beta-carotene created_by: yaf creation_date: 2013-01-22T10:30:23Z @@ -122606,8 +122053,8 @@ is_a: GO:0016118 ! carotenoid catabolic process is_a: GO:0016121 ! carotene catabolic process is_a: GO:1901810 ! beta-carotene metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:17579 ! beta-carotene -relationship: has_primary_input CHEBI:17579 ! beta-carotene +intersection_of: RO:0004009 CHEBI:17579 ! has primary input beta-carotene +relationship: RO:0004009 CHEBI:17579 ! has primary input beta-carotene created_by: yaf creation_date: 2013-01-22T10:30:28Z @@ -122624,8 +122071,8 @@ is_a: GO:0016117 ! carotenoid biosynthetic process is_a: GO:0016120 ! carotene biosynthetic process is_a: GO:1901810 ! beta-carotene metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:17579 ! beta-carotene -relationship: has_primary_output CHEBI:17579 ! beta-carotene +intersection_of: RO:0004008 CHEBI:17579 ! has primary output beta-carotene +relationship: RO:0004008 CHEBI:17579 ! has primary output beta-carotene created_by: yaf creation_date: 2013-01-22T10:30:32Z @@ -122637,8 +122084,8 @@ def: "The chemical reactions and pathways involving zeaxanthin." [GOC:TermGenie, synonym: "zeaxanthin metabolism" EXACT [GOC:TermGenie] is_a: GO:0016122 ! xanthophyll metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:27547 ! zeaxanthin -relationship: has_primary_input_or_output CHEBI:27547 ! zeaxanthin +intersection_of: RO:0004007 CHEBI:27547 ! has primary input or output zeaxanthin +relationship: RO:0004007 CHEBI:27547 ! has primary input or output zeaxanthin created_by: yaf creation_date: 2013-01-22T11:36:55Z @@ -122653,8 +122100,8 @@ synonym: "zeaxanthin degradation" EXACT [GOC:TermGenie] is_a: GO:0016124 ! xanthophyll catabolic process is_a: GO:1901825 ! zeaxanthin metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:27547 ! zeaxanthin -relationship: has_primary_input CHEBI:27547 ! zeaxanthin +intersection_of: RO:0004009 CHEBI:27547 ! has primary input zeaxanthin +relationship: RO:0004009 CHEBI:27547 ! has primary input zeaxanthin created_by: yaf creation_date: 2013-01-22T11:37:00Z @@ -122670,8 +122117,8 @@ synonym: "zeaxanthin synthesis" EXACT [GOC:TermGenie] is_a: GO:0016123 ! xanthophyll biosynthetic process is_a: GO:1901825 ! zeaxanthin metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:27547 ! zeaxanthin -relationship: has_primary_output CHEBI:27547 ! zeaxanthin +intersection_of: RO:0004008 CHEBI:27547 ! has primary output zeaxanthin +relationship: RO:0004008 CHEBI:27547 ! has primary output zeaxanthin created_by: yaf creation_date: 2013-01-22T11:37:07Z @@ -122682,8 +122129,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of muscle tissue development." [GOC:TermGenie, GOC:yaf, PMID:23150719] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060537 ! muscle tissue development -relationship: regulates GO:0060537 ! muscle tissue development +intersection_of: RO:0002211 GO:0060537 ! regulates (processual) muscle tissue development +relationship: RO:0002211 GO:0060537 ! regulates (processual) muscle tissue development created_by: yaf creation_date: 2013-02-01T10:30:47Z @@ -122699,8 +122146,8 @@ synonym: "inhibition of muscle tissue development" NARROW [GOC:TermGenie] is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:1901861 ! regulation of muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060537 ! muscle tissue development -relationship: negatively_regulates GO:0060537 ! muscle tissue development +intersection_of: RO:0002212 GO:0060537 ! negatively regulates muscle tissue development +relationship: RO:0002212 GO:0060537 ! negatively regulates muscle tissue development created_by: yaf creation_date: 2013-02-01T10:30:52Z @@ -122716,8 +122163,8 @@ synonym: "upregulation of muscle tissue development" EXACT [GOC:TermGenie] is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:1901861 ! regulation of muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060537 ! muscle tissue development -relationship: positively_regulates GO:0060537 ! muscle tissue development +intersection_of: RO:0002213 GO:0060537 ! positively regulates muscle tissue development +relationship: RO:0002213 GO:0060537 ! positively regulates muscle tissue development created_by: yaf creation_date: 2013-02-01T10:30:57Z @@ -122730,8 +122177,8 @@ subset: gocheck_do_not_annotate synonym: "regulation of calcium ion storage activity" RELATED [GOC:TermGenie] is_a: GO:0051098 ! regulation of binding intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0005509 ! calcium ion binding -relationship: regulates GO:0005509 ! calcium ion binding +intersection_of: RO:0002211 GO:0005509 ! regulates (processual) calcium ion binding +relationship: RO:0002211 GO:0005509 ! regulates (processual) calcium ion binding created_by: rl creation_date: 2013-02-06T12:38:12Z @@ -122753,8 +122200,8 @@ synonym: "negative regulation of calcium ion storage activity" RELATED [GOC:Term is_a: GO:0051100 ! negative regulation of binding is_a: GO:1901876 ! regulation of calcium ion binding intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0005509 ! calcium ion binding -relationship: negatively_regulates GO:0005509 ! calcium ion binding +intersection_of: RO:0002212 GO:0005509 ! negatively regulates calcium ion binding +relationship: RO:0002212 GO:0005509 ! negatively regulates calcium ion binding created_by: rl creation_date: 2013-02-06T12:38:22Z @@ -122776,8 +122223,8 @@ synonym: "upregulation of calcium ion storage activity" RELATED [GOC:TermGenie] is_a: GO:0051099 ! positive regulation of binding is_a: GO:1901876 ! regulation of calcium ion binding intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0005509 ! calcium ion binding -relationship: positively_regulates GO:0005509 ! calcium ion binding +intersection_of: RO:0002213 GO:0005509 ! positively regulates calcium ion binding +relationship: RO:0002213 GO:0005509 ! positively regulates calcium ion binding created_by: rl creation_date: 2013-02-06T12:38:26Z @@ -122792,8 +122239,8 @@ synonym: "regulation of protein polymer catabolism" EXACT [GOC:TermGenie] synonym: "regulation of protein polymer degradation" EXACT [GOC:TermGenie] is_a: GO:0043244 ! regulation of protein-containing complex disassembly intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051261 ! protein depolymerization -relationship: regulates GO:0051261 ! protein depolymerization +intersection_of: RO:0002211 GO:0051261 ! regulates (processual) protein depolymerization +relationship: RO:0002211 GO:0051261 ! regulates (processual) protein depolymerization created_by: rl creation_date: 2013-02-06T13:57:23Z @@ -122829,8 +122276,8 @@ synonym: "negative regulation of protein polymer degradation" EXACT [GOC:TermGen is_a: GO:0043242 ! negative regulation of protein-containing complex disassembly is_a: GO:1901879 ! regulation of protein depolymerization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051261 ! protein depolymerization -relationship: negatively_regulates GO:0051261 ! protein depolymerization +intersection_of: RO:0002212 GO:0051261 ! negatively regulates protein depolymerization +relationship: RO:0002212 GO:0051261 ! negatively regulates protein depolymerization created_by: rl creation_date: 2013-02-06T13:57:28Z @@ -122866,8 +122313,8 @@ synonym: "upregulation of protein polymer degradation" EXACT [GOC:TermGenie] is_a: GO:0043243 ! positive regulation of protein-containing complex disassembly is_a: GO:1901879 ! regulation of protein depolymerization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051261 ! protein depolymerization -relationship: positively_regulates GO:0051261 ! protein depolymerization +intersection_of: RO:0002213 GO:0051261 ! positively regulates protein depolymerization +relationship: RO:0002213 GO:0051261 ! positively regulates protein depolymerization created_by: rl creation_date: 2013-02-06T13:57:32Z @@ -122879,9 +122326,9 @@ def: "Any process that modulates the frequency, rate or extent of cell junction is_a: GO:0044087 ! regulation of cellular component biogenesis is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0034329 ! cell junction assembly -relationship: regulates GO:0034329 ! cell junction assembly -relationship: regulates GO:0044085 ! cellular component biogenesis +intersection_of: RO:0002211 GO:0034329 ! regulates (processual) cell junction assembly +relationship: RO:0002211 GO:0034329 ! regulates (processual) cell junction assembly +relationship: RO:0002211 GO:0044085 ! regulates (processual) cellular component biogenesis created_by: tb creation_date: 2013-02-06T19:40:32Z @@ -122897,8 +122344,8 @@ synonym: "inhibition of cell junction assembly" NARROW [GOC:TermGenie] is_a: GO:0051129 ! negative regulation of cellular component organization is_a: GO:1901888 ! regulation of cell junction assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0034329 ! cell junction assembly -relationship: negatively_regulates GO:0034329 ! cell junction assembly +intersection_of: RO:0002212 GO:0034329 ! negatively regulates cell junction assembly +relationship: RO:0002212 GO:0034329 ! negatively regulates cell junction assembly created_by: tb creation_date: 2013-02-06T19:40:41Z @@ -122915,9 +122362,9 @@ is_a: GO:0044089 ! positive regulation of cellular component biogenesis is_a: GO:0051130 ! positive regulation of cellular component organization is_a: GO:1901888 ! regulation of cell junction assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0034329 ! cell junction assembly -relationship: positively_regulates GO:0034329 ! cell junction assembly -relationship: positively_regulates GO:0044085 ! cellular component biogenesis +intersection_of: RO:0002213 GO:0034329 ! positively regulates cell junction assembly +relationship: RO:0002213 GO:0034329 ! positively regulates cell junction assembly +relationship: RO:0002213 GO:0044085 ! positively regulates cellular component biogenesis created_by: tb creation_date: 2013-02-06T19:40:46Z @@ -122932,10 +122379,10 @@ is_a: GO:0016482 ! cytosolic transport is_a: GO:0032253 ! dense core granule localization is_a: GO:0051650 ! establishment of vesicle localization intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input GO:0031045 ! dense core granule -intersection_of: occurs_in GO:0005829 ! cytosol -relationship: has_primary_input GO:0031045 ! dense core granule -relationship: occurs_in GO:0005829 ! cytosol +intersection_of: BFO:0000066 GO:0005829 ! occurs in cytosol +intersection_of: RO:0004009 GO:0031045 ! has primary input dense core granule +relationship: BFO:0000066 GO:0005829 ! occurs in cytosol +relationship: RO:0004009 GO:0031045 ! has primary input dense core granule created_by: pr creation_date: 2013-02-19T13:00:52Z @@ -122947,8 +122394,8 @@ def: "Any process that modulates the frequency, rate or extent of anterograde de is_a: GO:1901608 ! regulation of vesicle transport along microtubule is_a: GO:1904809 ! regulation of dense core granule transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990048 ! anterograde neuronal dense core vesicle transport -relationship: regulates GO:1990048 ! anterograde neuronal dense core vesicle transport +intersection_of: RO:0002211 GO:1990048 ! regulates (processual) anterograde neuronal dense core vesicle transport +relationship: RO:0002211 GO:1990048 ! regulates (processual) anterograde neuronal dense core vesicle transport created_by: pr creation_date: 2013-02-19T13:36:21Z @@ -122965,8 +122412,8 @@ is_a: GO:1901609 ! negative regulation of vesicle transport along microtubule is_a: GO:1901951 ! regulation of anterograde dense core granule transport is_a: GO:1904810 ! negative regulation of dense core granule transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990048 ! anterograde neuronal dense core vesicle transport -relationship: negatively_regulates GO:1990048 ! anterograde neuronal dense core vesicle transport +intersection_of: RO:0002212 GO:1990048 ! negatively regulates anterograde neuronal dense core vesicle transport +relationship: RO:0002212 GO:1990048 ! negatively regulates anterograde neuronal dense core vesicle transport created_by: pr creation_date: 2013-02-19T13:36:30Z @@ -122983,8 +122430,8 @@ is_a: GO:1901610 ! positive regulation of vesicle transport along microtubule is_a: GO:1901951 ! regulation of anterograde dense core granule transport is_a: GO:1904811 ! positive regulation of dense core granule transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990048 ! anterograde neuronal dense core vesicle transport -relationship: positively_regulates GO:1990048 ! anterograde neuronal dense core vesicle transport +intersection_of: RO:0002213 GO:1990048 ! positively regulates anterograde neuronal dense core vesicle transport +relationship: RO:0002213 GO:1990048 ! positively regulates anterograde neuronal dense core vesicle transport created_by: pr creation_date: 2013-02-19T13:36:35Z @@ -122997,8 +122444,8 @@ is_a: GO:1901608 ! regulation of vesicle transport along microtubule is_a: GO:1904809 ! regulation of dense core granule transport is_a: GO:2001017 ! regulation of retrograde axon cargo transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990049 ! retrograde neuronal dense core vesicle transport -relationship: regulates GO:1990049 ! retrograde neuronal dense core vesicle transport +intersection_of: RO:0002211 GO:1990049 ! regulates (processual) retrograde neuronal dense core vesicle transport +relationship: RO:0002211 GO:1990049 ! regulates (processual) retrograde neuronal dense core vesicle transport created_by: pr creation_date: 2013-02-19T13:36:43Z @@ -123016,8 +122463,8 @@ is_a: GO:1901954 ! regulation of retrograde dense core granule transport is_a: GO:1904810 ! negative regulation of dense core granule transport is_a: GO:2001018 ! negative regulation of retrograde axon cargo transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990049 ! retrograde neuronal dense core vesicle transport -relationship: negatively_regulates GO:1990049 ! retrograde neuronal dense core vesicle transport +intersection_of: RO:0002212 GO:1990049 ! negatively regulates retrograde neuronal dense core vesicle transport +relationship: RO:0002212 GO:1990049 ! negatively regulates retrograde neuronal dense core vesicle transport created_by: pr creation_date: 2013-02-19T13:36:47Z @@ -123035,8 +122482,8 @@ is_a: GO:1901954 ! regulation of retrograde dense core granule transport is_a: GO:1904811 ! positive regulation of dense core granule transport is_a: GO:2001019 ! positive regulation of retrograde axon cargo transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990049 ! retrograde neuronal dense core vesicle transport -relationship: positively_regulates GO:1990049 ! retrograde neuronal dense core vesicle transport +intersection_of: RO:0002213 GO:1990049 ! positively regulates retrograde neuronal dense core vesicle transport +relationship: RO:0002213 GO:1990049 ! positively regulates retrograde neuronal dense core vesicle transport created_by: pr creation_date: 2013-02-19T13:36:52Z @@ -123047,8 +122494,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cell proliferation involved in outflow tract morphogenesis." [GOC:dph, GOC:mtg_heart, GOC:TermGenie, PMID:21419760] is_a: GO:2000136 ! regulation of cell proliferation involved in heart morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061325 ! cell proliferation involved in outflow tract morphogenesis -relationship: regulates GO:0061325 ! cell proliferation involved in outflow tract morphogenesis +intersection_of: RO:0002211 GO:0061325 ! regulates (processual) cell proliferation involved in outflow tract morphogenesis +relationship: RO:0002211 GO:0061325 ! regulates (processual) cell proliferation involved in outflow tract morphogenesis created_by: dph creation_date: 2013-02-20T20:30:26Z @@ -123064,8 +122511,8 @@ synonym: "upregulation of cell proliferation involved in outflow tract morphogen is_a: GO:1901963 ! regulation of cell proliferation involved in outflow tract morphogenesis is_a: GO:2000138 ! positive regulation of cell proliferation involved in heart morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061325 ! cell proliferation involved in outflow tract morphogenesis -relationship: positively_regulates GO:0061325 ! cell proliferation involved in outflow tract morphogenesis +intersection_of: RO:0002213 GO:0061325 ! positively regulates cell proliferation involved in outflow tract morphogenesis +relationship: RO:0002213 GO:0061325 ! positively regulates cell proliferation involved in outflow tract morphogenesis created_by: dph creation_date: 2013-02-20T20:30:31Z @@ -123077,10 +122524,10 @@ def: "The process in which a fatty acid is transported across a membrane." [GOC: is_a: GO:0015908 ! fatty acid transport is_a: GO:1905039 ! carboxylic acid transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:28868 ! fatty acid anion -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:28868 ! fatty acid anion -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:28868 ! has primary input fatty acid anion +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:28868 ! has primary input fatty acid anion created_by: pr creation_date: 2013-03-21T09:57:00Z @@ -123094,9 +122541,9 @@ synonym: "regulation of cilium biogenesis" RELATED [GOC:TermGenie] is_a: GO:0120032 ! regulation of plasma membrane bounded cell projection assembly is_a: GO:1902115 ! regulation of organelle assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060271 ! cilium assembly +intersection_of: RO:0002211 GO:0060271 ! regulates (processual) cilium assembly relationship: never_in_taxon NCBITaxon:4751 ! Fungi -relationship: regulates GO:0060271 ! cilium assembly +relationship: RO:0002211 GO:0060271 ! regulates (processual) cilium assembly created_by: dph creation_date: 2013-03-26T18:10:51Z @@ -123123,8 +122570,8 @@ is_a: GO:0120033 ! negative regulation of plasma membrane bounded cell projectio is_a: GO:1902017 ! regulation of cilium assembly is_a: GO:1902116 ! negative regulation of organelle assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060271 ! cilium assembly -relationship: negatively_regulates GO:0060271 ! cilium assembly +intersection_of: RO:0002212 GO:0060271 ! negatively regulates cilium assembly +relationship: RO:0002212 GO:0060271 ! negatively regulates cilium assembly created_by: dph creation_date: 2013-03-26T18:10:56Z @@ -123137,8 +122584,8 @@ synonym: "regulation of ciliary cell motility" RELATED [] synonym: "regulation of cilium cell motility" EXACT [] is_a: GO:2000145 ! regulation of cell motility intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060285 ! cilium-dependent cell motility -relationship: regulates GO:0060285 ! cilium-dependent cell motility +intersection_of: RO:0002211 GO:0060285 ! regulates (processual) cilium-dependent cell motility +relationship: RO:0002211 GO:0060285 ! regulates (processual) cilium-dependent cell motility created_by: jl creation_date: 2013-03-27T14:42:38Z @@ -123156,8 +122603,8 @@ synonym: "negative regulation of cilium cell motility" EXACT [] is_a: GO:1902019 ! regulation of cilium-dependent cell motility is_a: GO:2000146 ! negative regulation of cell motility intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060285 ! cilium-dependent cell motility -relationship: negatively_regulates GO:0060285 ! cilium-dependent cell motility +intersection_of: RO:0002212 GO:0060285 ! negatively regulates cilium-dependent cell motility +relationship: RO:0002212 GO:0060285 ! negatively regulates cilium-dependent cell motility created_by: jl creation_date: 2013-03-27T14:42:42Z @@ -123169,8 +122616,8 @@ def: "Any process that modulates the frequency, rate or extent of hematopoietic synonym: "regulation of hemopoietic stem cell proliferation" EXACT [GOC:TermGenie] is_a: GO:0072091 ! regulation of stem cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0071425 ! hematopoietic stem cell proliferation -relationship: regulates GO:0071425 ! hematopoietic stem cell proliferation +intersection_of: RO:0002211 GO:0071425 ! regulates (processual) hematopoietic stem cell proliferation +relationship: RO:0002211 GO:0071425 ! regulates (processual) hematopoietic stem cell proliferation created_by: ss creation_date: 2013-04-02T05:13:19Z @@ -123192,9 +122639,9 @@ is_a: GO:1902033 ! regulation of hematopoietic stem cell proliferation is_a: GO:1903707 ! negative regulation of hemopoiesis is_a: GO:2000647 ! negative regulation of stem cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0071425 ! hematopoietic stem cell proliferation -relationship: negatively_regulates GO:0030097 ! hemopoiesis -relationship: negatively_regulates GO:0071425 ! hematopoietic stem cell proliferation +intersection_of: RO:0002212 GO:0071425 ! negatively regulates hematopoietic stem cell proliferation +relationship: RO:0002212 GO:0030097 ! negatively regulates hemopoiesis +relationship: RO:0002212 GO:0071425 ! negatively regulates hematopoietic stem cell proliferation created_by: ss creation_date: 2013-04-02T05:13:24Z @@ -123215,8 +122662,8 @@ synonym: "upregulation of hemopoietic stem cell proliferation" EXACT [GOC:TermGe is_a: GO:1902033 ! regulation of hematopoietic stem cell proliferation is_a: GO:2000648 ! positive regulation of stem cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0071425 ! hematopoietic stem cell proliferation -relationship: positively_regulates GO:0071425 ! hematopoietic stem cell proliferation +intersection_of: RO:0002213 GO:0071425 ! positively regulates hematopoietic stem cell proliferation +relationship: RO:0002213 GO:0071425 ! positively regulates hematopoietic stem cell proliferation created_by: ss creation_date: 2013-04-02T05:13:31Z @@ -123231,8 +122678,8 @@ synonym: "regulation of hemopoietic stem cell differentiation" EXACT [GOC:TermGe is_a: GO:1901532 ! regulation of hematopoietic progenitor cell differentiation is_a: GO:2000736 ! regulation of stem cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060218 ! hematopoietic stem cell differentiation -relationship: regulates GO:0060218 ! hematopoietic stem cell differentiation +intersection_of: RO:0002211 GO:0060218 ! regulates (processual) hematopoietic stem cell differentiation +relationship: RO:0002211 GO:0060218 ! regulates (processual) hematopoietic stem cell differentiation created_by: ss creation_date: 2013-04-02T05:19:09Z @@ -123264,8 +122711,8 @@ is_a: GO:1901533 ! negative regulation of hematopoietic progenitor cell differen is_a: GO:1902036 ! regulation of hematopoietic stem cell differentiation is_a: GO:2000737 ! negative regulation of stem cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060218 ! hematopoietic stem cell differentiation -relationship: negatively_regulates GO:0060218 ! hematopoietic stem cell differentiation +intersection_of: RO:0002212 GO:0060218 ! negatively regulates hematopoietic stem cell differentiation +relationship: RO:0002212 GO:0060218 ! negatively regulates hematopoietic stem cell differentiation created_by: ss creation_date: 2013-04-02T05:19:14Z @@ -123297,8 +122744,8 @@ is_a: GO:1901534 ! positive regulation of hematopoietic progenitor cell differen is_a: GO:1902036 ! regulation of hematopoietic stem cell differentiation is_a: GO:2000738 ! positive regulation of stem cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060218 ! hematopoietic stem cell differentiation -relationship: positively_regulates GO:0060218 ! hematopoietic stem cell differentiation +intersection_of: RO:0002213 GO:0060218 ! positively regulates hematopoietic stem cell differentiation +relationship: RO:0002213 GO:0060218 ! positively regulates hematopoietic stem cell differentiation created_by: ss creation_date: 2013-04-02T05:19:19Z @@ -123307,11 +122754,11 @@ id: GO:1902065 name: response to L-glutamate namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an L-glutamate stimulus." [GOC:TermGenie, PMID:23574009] -is_a: GO:0010243 ! response to organonitrogen compound +is_a: GO:1901698 ! response to nitrogen compound is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:29985 ! L-glutamate(1-) -relationship: has_primary_input CHEBI:29985 ! L-glutamate(1-) +intersection_of: RO:0004009 CHEBI:29985 ! has primary input L-glutamate(1-) +relationship: RO:0004009 CHEBI:29985 ! has primary input L-glutamate(1-) created_by: tb creation_date: 2013-04-16T21:21:14Z @@ -123323,8 +122770,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to salinity" NARROW [GOC:mls] is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:24866 ! salt -relationship: has_primary_input CHEBI:24866 ! salt +intersection_of: RO:0004009 CHEBI:24866 ! has primary input salt +relationship: RO:0004009 CHEBI:24866 ! has primary input salt created_by: mls creation_date: 2013-04-22T15:41:57Z @@ -123337,8 +122784,8 @@ synonym: "cellular response to salinity" NARROW [GOC:mls] is_a: GO:0070887 ! cellular response to chemical stimulus is_a: GO:1902074 ! response to salt intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:24866 ! salt -relationship: has_primary_input CHEBI:24866 ! salt +intersection_of: RO:0004009 CHEBI:24866 ! has primary input salt +relationship: RO:0004009 CHEBI:24866 ! has primary input salt created_by: mls creation_date: 2013-04-22T15:42:02Z @@ -123362,8 +122809,8 @@ is_a: GO:1901317 ! regulation of flagellated sperm motility is_a: GO:2000155 ! positive regulation of cilium-dependent cell motility is_a: GO:2000243 ! positive regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030317 ! flagellated sperm motility -relationship: positively_regulates GO:0030317 ! flagellated sperm motility +intersection_of: RO:0002213 GO:0030317 ! positively regulates flagellated sperm motility +relationship: RO:0002213 GO:0030317 ! positively regulates flagellated sperm motility created_by: bf creation_date: 2013-04-29T09:15:25Z @@ -123376,8 +122823,8 @@ synonym: "regulation of immune cell differentiation" EXACT [GOC:TermGenie] synonym: "regulation of leucocyte differentiation" EXACT [GOC:TermGenie] is_a: GO:1903706 ! regulation of hemopoiesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002521 ! leukocyte differentiation -relationship: regulates GO:0002521 ! leukocyte differentiation +intersection_of: RO:0002211 GO:0002521 ! regulates (processual) leukocyte differentiation +relationship: RO:0002211 GO:0002521 ! regulates (processual) leukocyte differentiation created_by: pr creation_date: 2013-05-02T17:32:42Z @@ -123403,8 +122850,8 @@ synonym: "negative regulation of leucocyte differentiation" EXACT [GOC:TermGenie is_a: GO:1902105 ! regulation of leukocyte differentiation is_a: GO:1903707 ! negative regulation of hemopoiesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002521 ! leukocyte differentiation -relationship: negatively_regulates GO:0002521 ! leukocyte differentiation +intersection_of: RO:0002212 GO:0002521 ! negatively regulates leukocyte differentiation +relationship: RO:0002212 GO:0002521 ! negatively regulates leukocyte differentiation created_by: pr creation_date: 2013-05-02T17:32:47Z @@ -123430,8 +122877,8 @@ synonym: "upregulation of leukocyte differentiation" EXACT [GOC:TermGenie] is_a: GO:1902105 ! regulation of leukocyte differentiation is_a: GO:1903708 ! positive regulation of hemopoiesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002521 ! leukocyte differentiation -relationship: positively_regulates GO:0002521 ! leukocyte differentiation +intersection_of: RO:0002213 GO:0002521 ! positively regulates leukocyte differentiation +relationship: RO:0002213 GO:0002521 ! positively regulates leukocyte differentiation created_by: pr creation_date: 2013-05-02T17:32:52Z @@ -123443,9 +122890,9 @@ def: "Any process that modulates the frequency, rate or extent of organelle asse is_a: GO:0033043 ! regulation of organelle organization is_a: GO:0044087 ! regulation of cellular component biogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070925 ! organelle assembly -relationship: regulates GO:0044085 ! cellular component biogenesis -relationship: regulates GO:0070925 ! organelle assembly +intersection_of: RO:0002211 GO:0070925 ! regulates (processual) organelle assembly +relationship: RO:0002211 GO:0044085 ! regulates (processual) cellular component biogenesis +relationship: RO:0002211 GO:0070925 ! regulates (processual) organelle assembly created_by: pr creation_date: 2013-05-14T09:43:21Z @@ -123461,8 +122908,8 @@ synonym: "inhibition of organelle assembly" NARROW [GOC:TermGenie] is_a: GO:0010639 ! negative regulation of organelle organization is_a: GO:1902115 ! regulation of organelle assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070925 ! organelle assembly -relationship: negatively_regulates GO:0070925 ! organelle assembly +intersection_of: RO:0002212 GO:0070925 ! negatively regulates organelle assembly +relationship: RO:0002212 GO:0070925 ! negatively regulates organelle assembly created_by: pr creation_date: 2013-05-14T09:43:31Z @@ -123479,9 +122926,9 @@ is_a: GO:0010638 ! positive regulation of organelle organization is_a: GO:0044089 ! positive regulation of cellular component biogenesis is_a: GO:1902115 ! regulation of organelle assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070925 ! organelle assembly -relationship: positively_regulates GO:0044085 ! cellular component biogenesis -relationship: positively_regulates GO:0070925 ! organelle assembly +intersection_of: RO:0002213 GO:0070925 ! positively regulates organelle assembly +relationship: RO:0002213 GO:0044085 ! positively regulates cellular component biogenesis +relationship: RO:0002213 GO:0070925 ! positively regulates organelle assembly created_by: pr creation_date: 2013-05-14T09:43:36Z @@ -123493,8 +122940,8 @@ def: "Any process that modulates the frequency, rate or extent of keratinocyte a synonym: "regulation of keratinocyte apoptosis" NARROW [GOC:TermGenie] is_a: GO:1904035 ! regulation of epithelial cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0097283 ! keratinocyte apoptotic process -relationship: regulates GO:0097283 ! keratinocyte apoptotic process +intersection_of: RO:0002211 GO:0097283 ! regulates (processual) keratinocyte apoptotic process +relationship: RO:0002211 GO:0097283 ! regulates (processual) keratinocyte apoptotic process created_by: rl creation_date: 2013-05-29T14:36:11Z @@ -123515,8 +122962,8 @@ synonym: "negative regulation of keratinocyte apoptosis" NARROW [GOC:TermGenie] is_a: GO:1902172 ! regulation of keratinocyte apoptotic process is_a: GO:1904036 ! negative regulation of epithelial cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0097283 ! keratinocyte apoptotic process -relationship: negatively_regulates GO:0097283 ! keratinocyte apoptotic process +intersection_of: RO:0002212 GO:0097283 ! negatively regulates keratinocyte apoptotic process +relationship: RO:0002212 GO:0097283 ! negatively regulates keratinocyte apoptotic process created_by: rl creation_date: 2013-05-29T14:36:15Z @@ -123537,8 +122984,8 @@ synonym: "upregulation of keratinocyte apoptotic process" EXACT [GOC:TermGenie] is_a: GO:1902172 ! regulation of keratinocyte apoptotic process is_a: GO:1904037 ! positive regulation of epithelial cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0097283 ! keratinocyte apoptotic process -relationship: positively_regulates GO:0097283 ! keratinocyte apoptotic process +intersection_of: RO:0002213 GO:0097283 ! positively regulates keratinocyte apoptotic process +relationship: RO:0002213 GO:0097283 ! positively regulates keratinocyte apoptotic process created_by: rl creation_date: 2013-05-29T14:36:21Z @@ -123551,8 +122998,8 @@ synonym: "regulation of PRL signaling pathway" EXACT [GOC:TermGenie] synonym: "regulation of prolactin-mediated signaling pathway" EXACT [GOC:TermGenie] is_a: GO:0001959 ! regulation of cytokine-mediated signaling pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0038161 ! prolactin signaling pathway -relationship: regulates GO:0038161 ! prolactin signaling pathway +intersection_of: RO:0002211 GO:0038161 ! regulates (processual) prolactin signaling pathway +relationship: RO:0002211 GO:0038161 ! regulates (processual) prolactin signaling pathway created_by: lb creation_date: 2013-06-12T10:10:07Z @@ -123578,8 +123025,8 @@ synonym: "negative regulation of prolactin-mediated signaling pathway" EXACT [GO is_a: GO:0001960 ! negative regulation of cytokine-mediated signaling pathway is_a: GO:1902211 ! regulation of prolactin signaling pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0038161 ! prolactin signaling pathway -relationship: negatively_regulates GO:0038161 ! prolactin signaling pathway +intersection_of: RO:0002212 GO:0038161 ! negatively regulates prolactin signaling pathway +relationship: RO:0002212 GO:0038161 ! negatively regulates prolactin signaling pathway created_by: lb creation_date: 2013-06-12T10:10:12Z @@ -123605,8 +123052,8 @@ synonym: "upregulation of prolactin-mediated signaling pathway" EXACT [GOC:TermG is_a: GO:0001961 ! positive regulation of cytokine-mediated signaling pathway is_a: GO:1902211 ! regulation of prolactin signaling pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0038161 ! prolactin signaling pathway -relationship: positively_regulates GO:0038161 ! prolactin signaling pathway +intersection_of: RO:0002213 GO:0038161 ! positively regulates prolactin signaling pathway +relationship: RO:0002213 GO:0038161 ! positively regulates prolactin signaling pathway created_by: lb creation_date: 2013-06-12T10:10:18Z @@ -123622,9 +123069,9 @@ synonym: "red blood cell apoptosis" NARROW [GOC:TermGenie] synonym: "red blood cell apoptotic process" EXACT [GOC:TermGenie] is_a: GO:0033028 ! myeloid cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000232 ! erythrocyte +intersection_of: BFO:0000066 CL:0000232 ! occurs in erythrocyte +relationship: BFO:0000066 CL:0000232 ! occurs in erythrocyte relationship: never_in_taxon NCBITaxon:4751 ! Fungi -relationship: occurs_in CL:0000232 ! erythrocyte created_by: rl creation_date: 2013-06-13T10:02:29Z @@ -123636,8 +123083,8 @@ def: "The chemical reactions and pathways involving erythrose 4-phosphate/phosph synonym: "erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolism" EXACT [GOC:TermGenie] is_a: GO:0170039 ! proteinogenic amino acid metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:73690 ! erythrose 4-phosphate/phosphoenolpyruvate family amino acid -relationship: has_primary_input_or_output CHEBI:73690 ! erythrose 4-phosphate/phosphoenolpyruvate family amino acid +intersection_of: RO:0004007 CHEBI:73690 ! has primary input or output erythrose 4-phosphate/phosphoenolpyruvate family amino acid +relationship: RO:0004007 CHEBI:73690 ! has primary input or output erythrose 4-phosphate/phosphoenolpyruvate family amino acid created_by: pr creation_date: 2013-06-13T10:37:38Z @@ -123652,8 +123099,8 @@ synonym: "erythrose 4-phosphate/phosphoenolpyruvate family amino acid degradatio is_a: GO:0170040 ! proteinogenic amino acid catabolic process is_a: GO:1902221 ! erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:73690 ! erythrose 4-phosphate/phosphoenolpyruvate family amino acid -relationship: has_primary_input CHEBI:73690 ! erythrose 4-phosphate/phosphoenolpyruvate family amino acid +intersection_of: RO:0004009 CHEBI:73690 ! has primary input erythrose 4-phosphate/phosphoenolpyruvate family amino acid +relationship: RO:0004009 CHEBI:73690 ! has primary input erythrose 4-phosphate/phosphoenolpyruvate family amino acid created_by: pr creation_date: 2013-06-13T10:37:43Z @@ -123669,8 +123116,8 @@ synonym: "erythrose 4-phosphate/phosphoenolpyruvate family amino acid synthesis" is_a: GO:0170038 ! proteinogenic amino acid biosynthetic process is_a: GO:1902221 ! erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:73690 ! erythrose 4-phosphate/phosphoenolpyruvate family amino acid -relationship: has_primary_output CHEBI:73690 ! erythrose 4-phosphate/phosphoenolpyruvate family amino acid +intersection_of: RO:0004008 CHEBI:73690 ! has primary output erythrose 4-phosphate/phosphoenolpyruvate family amino acid +relationship: RO:0004008 CHEBI:73690 ! has primary output erythrose 4-phosphate/phosphoenolpyruvate family amino acid created_by: pr creation_date: 2013-06-13T10:37:49Z @@ -123686,8 +123133,8 @@ synonym: "regulation of red blood cell apoptosis" NARROW [GOC:TermGenie] synonym: "regulation of red blood cell apoptotic process" EXACT [GOC:TermGenie] is_a: GO:0033032 ! regulation of myeloid cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1902217 ! erythrocyte apoptotic process -relationship: regulates GO:1902217 ! erythrocyte apoptotic process +intersection_of: RO:0002211 GO:1902217 ! regulates (processual) erythrocyte apoptotic process +relationship: RO:0002211 GO:1902217 ! regulates (processual) erythrocyte apoptotic process created_by: rl creation_date: 2013-06-20T19:30:53Z @@ -123728,9 +123175,9 @@ synonym: "negative regulation of red blood cell apoptotic process" EXACT [GOC:Te is_a: GO:0033033 ! negative regulation of myeloid cell apoptotic process is_a: GO:1902250 ! regulation of erythrocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1902217 ! erythrocyte apoptotic process -relationship: negatively_regulates GO:1902217 ! erythrocyte apoptotic process +intersection_of: RO:0002212 GO:1902217 ! negatively regulates erythrocyte apoptotic process relationship: never_in_taxon NCBITaxon:4751 ! Fungi +relationship: RO:0002212 GO:1902217 ! negatively regulates erythrocyte apoptotic process created_by: rl creation_date: 2013-06-20T19:30:59Z @@ -123771,9 +123218,9 @@ synonym: "upregulation of red blood cell apoptotic process" EXACT [GOC:TermGenie is_a: GO:0033034 ! positive regulation of myeloid cell apoptotic process is_a: GO:1902250 ! regulation of erythrocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1902217 ! erythrocyte apoptotic process +intersection_of: RO:0002213 GO:1902217 ! positively regulates erythrocyte apoptotic process relationship: never_in_taxon NCBITaxon:4751 ! Fungi -relationship: positively_regulates GO:1902217 ! erythrocyte apoptotic process +relationship: RO:0002213 GO:1902217 ! positively regulates erythrocyte apoptotic process created_by: rl creation_date: 2013-06-20T19:31:04Z @@ -123785,8 +123232,8 @@ def: "Any process that modulates the frequency, rate or extent of apoptotic proc synonym: "regulation of apoptosis involved in outflow tract morphogenesis" NARROW [GOC:TermGenie] is_a: GO:1902337 ! regulation of apoptotic process involved in morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003275 ! apoptotic process involved in outflow tract morphogenesis -relationship: regulates GO:0003275 ! apoptotic process involved in outflow tract morphogenesis +intersection_of: RO:0002211 GO:0003275 ! regulates (processual) apoptotic process involved in outflow tract morphogenesis +relationship: RO:0002211 GO:0003275 ! regulates (processual) apoptotic process involved in outflow tract morphogenesis created_by: dph creation_date: 2013-06-24T19:12:24Z @@ -123807,8 +123254,8 @@ synonym: "negative regulation of apoptosis involved in outflow tract morphogenes is_a: GO:1902256 ! regulation of apoptotic process involved in outflow tract morphogenesis is_a: GO:1902338 ! negative regulation of apoptotic process involved in morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003275 ! apoptotic process involved in outflow tract morphogenesis -relationship: negatively_regulates GO:0003275 ! apoptotic process involved in outflow tract morphogenesis +intersection_of: RO:0002212 GO:0003275 ! negatively regulates apoptotic process involved in outflow tract morphogenesis +relationship: RO:0002212 GO:0003275 ! negatively regulates apoptotic process involved in outflow tract morphogenesis created_by: dph creation_date: 2013-06-24T19:12:30Z @@ -123829,8 +123276,8 @@ synonym: "upregulation of apoptotic process involved in outflow tract morphogene is_a: GO:1902256 ! regulation of apoptotic process involved in outflow tract morphogenesis is_a: GO:1902339 ! positive regulation of apoptotic process involved in morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003275 ! apoptotic process involved in outflow tract morphogenesis -relationship: positively_regulates GO:0003275 ! apoptotic process involved in outflow tract morphogenesis +intersection_of: RO:0002213 GO:0003275 ! positively regulates apoptotic process involved in outflow tract morphogenesis +relationship: RO:0002213 GO:0003275 ! positively regulates apoptotic process involved in outflow tract morphogenesis created_by: dph creation_date: 2013-06-24T19:12:42Z @@ -123867,8 +123314,8 @@ synonym: "regulation of chromatin organisation" EXACT [GOC:TermGenie] synonym: "regulation of establishment or maintenance of chromatin architecture" EXACT [GOC:TermGenie] is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006325 ! chromatin organization -relationship: regulates GO:0006325 ! chromatin organization +intersection_of: RO:0002211 GO:0006325 ! regulates (processual) chromatin organization +relationship: RO:0002211 GO:0006325 ! regulates (processual) chromatin organization created_by: bf creation_date: 2013-07-01T13:21:52Z @@ -123881,8 +123328,8 @@ synonym: "regulation of sodium ion membrane transport" EXACT [GOC:TermGenie] is_a: GO:0002028 ! regulation of sodium ion transport is_a: GO:1904062 ! regulation of monoatomic cation transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035725 ! sodium ion transmembrane transport -relationship: regulates GO:0035725 ! sodium ion transmembrane transport +intersection_of: RO:0002211 GO:0035725 ! regulates (processual) sodium ion transmembrane transport +relationship: RO:0002211 GO:0035725 ! regulates (processual) sodium ion transmembrane transport created_by: rl creation_date: 2013-07-18T13:33:53Z @@ -123904,8 +123351,8 @@ is_a: GO:0010766 ! negative regulation of sodium ion transport is_a: GO:1902305 ! regulation of sodium ion transmembrane transport is_a: GO:1904063 ! negative regulation of cation transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035725 ! sodium ion transmembrane transport -relationship: negatively_regulates GO:0035725 ! sodium ion transmembrane transport +intersection_of: RO:0002212 GO:0035725 ! negatively regulates sodium ion transmembrane transport +relationship: RO:0002212 GO:0035725 ! negatively regulates sodium ion transmembrane transport created_by: rl creation_date: 2013-07-18T13:34:01Z @@ -123927,8 +123374,8 @@ is_a: GO:0010765 ! positive regulation of sodium ion transport is_a: GO:1902305 ! regulation of sodium ion transmembrane transport is_a: GO:1904064 ! positive regulation of cation transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035725 ! sodium ion transmembrane transport -relationship: positively_regulates GO:0035725 ! sodium ion transmembrane transport +intersection_of: RO:0002213 GO:0035725 ! positively regulates sodium ion transmembrane transport +relationship: RO:0002213 GO:0035725 ! positively regulates sodium ion transmembrane transport created_by: rl creation_date: 2013-07-18T13:34:18Z @@ -123942,8 +123389,8 @@ synonym: "regulation of apoptosis involved in morphogenesis" NARROW [GOC:TermGen synonym: "regulation of morphogenetic apoptosis" RELATED [GOC:TermGenie] is_a: GO:1904748 ! regulation of apoptotic process involved in development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060561 ! apoptotic process involved in morphogenesis -relationship: regulates GO:0060561 ! apoptotic process involved in morphogenesis +intersection_of: RO:0002211 GO:0060561 ! regulates (processual) apoptotic process involved in morphogenesis +relationship: RO:0002211 GO:0060561 ! regulates (processual) apoptotic process involved in morphogenesis created_by: sart creation_date: 2013-07-29T15:03:16Z @@ -123974,8 +123421,8 @@ synonym: "negative regulation of morphogenetic apoptosis" RELATED [GOC:TermGenie is_a: GO:1902337 ! regulation of apoptotic process involved in morphogenesis is_a: GO:1904746 ! negative regulation of apoptotic process involved in development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060561 ! apoptotic process involved in morphogenesis -relationship: negatively_regulates GO:0060561 ! apoptotic process involved in morphogenesis +intersection_of: RO:0002212 GO:0060561 ! negatively regulates apoptotic process involved in morphogenesis +relationship: RO:0002212 GO:0060561 ! negatively regulates apoptotic process involved in morphogenesis created_by: sart creation_date: 2013-07-29T15:03:25Z @@ -124006,8 +123453,8 @@ synonym: "upregulation of morphogenetic apoptosis" RELATED [GOC:TermGenie] is_a: GO:1902337 ! regulation of apoptotic process involved in morphogenesis is_a: GO:1904747 ! positive regulation of apoptotic process involved in development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060561 ! apoptotic process involved in morphogenesis -relationship: positively_regulates GO:0060561 ! apoptotic process involved in morphogenesis +intersection_of: RO:0002213 GO:0060561 ! positively regulates apoptotic process involved in morphogenesis +relationship: RO:0002213 GO:0060561 ! positively regulates apoptotic process involved in morphogenesis created_by: sart creation_date: 2013-07-29T15:03:33Z @@ -124033,8 +123480,8 @@ synonym: "negative regulation of nuclear chromosome condensation" EXACT [GOC:Ter is_a: GO:0060623 ! regulation of chromosome condensation is_a: GO:2001251 ! negative regulation of chromosome organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030261 ! chromosome condensation -relationship: negatively_regulates GO:0030261 ! chromosome condensation +intersection_of: RO:0002212 GO:0030261 ! negatively regulates chromosome condensation +relationship: RO:0002212 GO:0030261 ! negatively regulates chromosome condensation created_by: dgf creation_date: 2013-07-29T20:54:14Z @@ -124043,11 +123490,13 @@ id: GO:1902358 name: sulfate transmembrane transport namespace: biological_process def: "The directed movement of sulfate across a membrane." [GOC:dph, GOC:TermGenie, PMID:9055073] -is_a: GO:0008272 ! sulfate transport +synonym: "sulphate transport" EXACT [] +is_a: GO:0072348 ! sulfur compound transport is_a: GO:0098661 ! inorganic anion transmembrane transport intersection_of: GO:0055085 ! transmembrane transport -intersection_of: has_primary_input CHEBI:16189 ! sulfate -relationship: has_primary_input CHEBI:16189 ! sulfate +intersection_of: RO:0004009 CHEBI:16189 ! has primary input sulfate +relationship: RO:0004009 CHEBI:16189 ! has primary input sulfate +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28653" xsd:anyURI created_by: dph creation_date: 2013-08-14T14:46:04Z @@ -124061,8 +123510,8 @@ synonym: "melanophore apoptosis" NARROW [GOC:TermGenie] synonym: "melanophore apoptotic process" NARROW [GOC:TermGenie] is_a: GO:0006915 ! apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000148 ! melanocyte -relationship: occurs_in CL:0000148 ! melanocyte +intersection_of: BFO:0000066 CL:0000148 ! occurs in melanocyte +relationship: BFO:0000066 CL:0000148 ! occurs in melanocyte created_by: pr creation_date: 2013-08-15T16:35:45Z @@ -124093,8 +123542,8 @@ synonym: "negative regulation of RNA degradation" EXACT [GOC:TermGenie] is_a: GO:0009895 ! negative regulation of catabolic process is_a: GO:0051253 ! negative regulation of RNA metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006401 ! RNA catabolic process -relationship: negatively_regulates GO:0006401 ! RNA catabolic process +intersection_of: RO:0002212 GO:0006401 ! negatively regulates RNA catabolic process +relationship: RO:0002212 GO:0006401 ! negatively regulates RNA catabolic process created_by: bf creation_date: 2013-08-22T14:59:39Z @@ -124108,8 +123557,8 @@ synonym: "protein localisation to tight junction" EXACT [GOC:TermGenie] synonym: "protein localization in tight junction" EXACT [GOC:TermGenie] is_a: GO:0150105 ! protein localization to cell-cell junction intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005923 ! bicellular tight junction -relationship: has_target_end_location GO:0005923 ! bicellular tight junction +intersection_of: RO:0002339 GO:0005923 ! has target end location bicellular tight junction +relationship: RO:0002339 GO:0005923 ! has target end location bicellular tight junction created_by: tb creation_date: 2013-09-11T21:43:13Z @@ -124123,8 +123572,8 @@ synonym: "protein localisation to cell junction" EXACT [GOC:TermGenie] synonym: "protein localization in cell junction" EXACT [GOC:TermGenie] is_a: GO:0008104 ! protein localization intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0030054 ! cell junction -relationship: has_target_end_location GO:0030054 ! cell junction +intersection_of: RO:0002339 GO:0030054 ! has target end location cell junction +relationship: RO:0002339 GO:0030054 ! has target end location cell junction created_by: tb creation_date: 2013-09-13T16:55:57Z @@ -124138,14 +123587,14 @@ synonym: "sulphate import into cell" EXACT [] is_a: GO:0098658 ! inorganic anion import across plasma membrane is_a: GO:1902358 ! sulfate transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:16189 ! sulfate -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005576 ! extracellular region -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:16189 ! sulfate -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005576 ! extracellular region -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:16189 ! has primary input sulfate +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:16189 ! has primary input sulfate created_by: mah creation_date: 2013-10-07T14:12:38Z @@ -124167,8 +123616,8 @@ is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:2000036 ! regulation of stem cell population maintenance intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0019827 ! stem cell population maintenance -relationship: negatively_regulates GO:0019827 ! stem cell population maintenance +intersection_of: RO:0002212 GO:0019827 ! negatively regulates stem cell population maintenance +relationship: RO:0002212 GO:0019827 ! negatively regulates stem cell population maintenance created_by: cjm creation_date: 2013-10-16T22:19:17Z @@ -124190,8 +123639,8 @@ is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:2000036 ! regulation of stem cell population maintenance intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0019827 ! stem cell population maintenance -relationship: positively_regulates GO:0019827 ! stem cell population maintenance +intersection_of: RO:0002213 GO:0019827 ! positively regulates stem cell population maintenance +relationship: RO:0002213 GO:0019827 ! positively regulates stem cell population maintenance created_by: cjm creation_date: 2013-10-16T22:27:47Z @@ -124205,8 +123654,8 @@ synonym: "protein localisation to cell leading edge" EXACT [GOC:TermGenie] synonym: "protein localization in cell leading edge" EXACT [GOC:TermGenie] is_a: GO:0008104 ! protein localization intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0031252 ! cell leading edge -relationship: has_target_end_location GO:0031252 ! cell leading edge +intersection_of: RO:0002339 GO:0031252 ! has target end location cell leading edge +relationship: RO:0002339 GO:0031252 ! has target end location cell leading edge created_by: jl creation_date: 2013-10-22T12:36:07Z @@ -124218,8 +123667,8 @@ def: "Any process that modulates the frequency, rate or extent of protein locali synonym: "regulation of protein localisation to synapse" EXACT [GOC:TermGenie] is_a: GO:0032880 ! regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035418 ! protein localization to synapse -relationship: regulates GO:0035418 ! protein localization to synapse +intersection_of: RO:0002211 GO:0035418 ! regulates (processual) protein localization to synapse +relationship: RO:0002211 GO:0035418 ! regulates (processual) protein localization to synapse created_by: kmv creation_date: 2013-10-25T15:09:09Z @@ -124240,8 +123689,8 @@ synonym: "upregulation of protein localization to synapse" EXACT [GOC:TermGenie] is_a: GO:1902473 ! regulation of protein localization to synapse is_a: GO:1903829 ! positive regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035418 ! protein localization to synapse -relationship: positively_regulates GO:0035418 ! protein localization to synapse +intersection_of: RO:0002213 GO:0035418 ! positively regulates protein localization to synapse +relationship: RO:0002213 GO:0035418 ! positively regulates protein localization to synapse created_by: kmv creation_date: 2013-10-25T15:09:18Z @@ -124253,8 +123702,8 @@ def: "The directed movement of L-alpha-amino acid across a membrane by means of is_a: GO:0003333 ! amino acid transmembrane transport is_a: GO:0015807 ! L-amino acid transport intersection_of: GO:0055085 ! transmembrane transport -intersection_of: has_primary_input CHEBI:59869 ! L-alpha-amino acid zwitterion -relationship: has_primary_input CHEBI:59869 ! L-alpha-amino acid zwitterion +intersection_of: RO:0004009 CHEBI:59869 ! has primary input L-alpha-amino acid zwitterion +relationship: RO:0004009 CHEBI:59869 ! has primary input L-alpha-amino acid zwitterion created_by: kmv creation_date: 2013-10-25T15:17:39Z @@ -124266,8 +123715,8 @@ def: "Any apoptotic process in a Sertoli cell." [GOC:ic, GOC:TermGenie, PMID:177 synonym: "Sertoli cell apoptosis" NARROW [GOC:TermGenie] is_a: GO:1904019 ! epithelial cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000216 ! Sertoli cell -relationship: occurs_in CL:0000216 ! Sertoli cell +intersection_of: BFO:0000066 CL:0000216 ! occurs in Sertoli cell +relationship: BFO:0000066 CL:0000216 ! occurs in Sertoli cell created_by: pr creation_date: 2013-11-06T11:27:34Z @@ -124281,8 +123730,8 @@ synonym: "epithelial cell of bile duct apoptosis" NARROW [GOC:TermGenie] synonym: "epithelial cell of bile duct apoptotic process" EXACT [GOC:TermGenie] is_a: GO:1904019 ! epithelial cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:1000488 ! cholangiocyte -relationship: occurs_in CL:1000488 ! cholangiocyte +intersection_of: BFO:0000066 CL:1000488 ! occurs in cholangiocyte +relationship: BFO:0000066 CL:1000488 ! occurs in cholangiocyte created_by: cls creation_date: 2013-11-12T15:30:08Z @@ -124294,8 +123743,8 @@ def: "Any apoptotic process in a hepatoblast." [GOC:TermGenie, PMID:22412967] synonym: "hepatoblast apoptosis" NARROW [GOC:TermGenie] is_a: GO:0006915 ! apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0005026 ! hepatoblast -relationship: occurs_in CL:0005026 ! hepatoblast +intersection_of: BFO:0000066 CL:0005026 ! occurs in hepatoblast +relationship: BFO:0000066 CL:0005026 ! occurs in hepatoblast created_by: cls creation_date: 2013-11-12T17:02:52Z @@ -124309,8 +123758,8 @@ is_a: GO:0051239 ! regulation of multicellular organismal process is_a: GO:1903429 ! regulation of cell maturation is_a: GO:2000241 ! regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048240 ! sperm capacitation -relationship: regulates GO:0048240 ! sperm capacitation +intersection_of: RO:0002211 GO:0048240 ! regulates (processual) sperm capacitation +relationship: RO:0002211 GO:0048240 ! regulates (processual) sperm capacitation created_by: hjd creation_date: 2013-11-12T21:17:03Z @@ -124333,8 +123782,8 @@ is_a: GO:1902490 ! regulation of sperm capacitation is_a: GO:1903430 ! negative regulation of cell maturation is_a: GO:2000242 ! negative regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048240 ! sperm capacitation -relationship: negatively_regulates GO:0048240 ! sperm capacitation +intersection_of: RO:0002212 GO:0048240 ! negatively regulates sperm capacitation +relationship: RO:0002212 GO:0048240 ! negatively regulates sperm capacitation created_by: hjd creation_date: 2013-11-12T21:17:12Z @@ -124357,8 +123806,8 @@ is_a: GO:1902490 ! regulation of sperm capacitation is_a: GO:1903431 ! positive regulation of cell maturation is_a: GO:2000243 ! positive regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048240 ! sperm capacitation -relationship: positively_regulates GO:0048240 ! sperm capacitation +intersection_of: RO:0002213 GO:0048240 ! positively regulates sperm capacitation +relationship: RO:0002213 GO:0048240 ! positively regulates sperm capacitation created_by: hjd creation_date: 2013-11-12T21:17:21Z @@ -124405,8 +123854,8 @@ synonym: "regulation of DNA fragmentation involved in apoptotic nuclear change" synonym: "regulation of endonucleolytic DNA catabolic process involved in apoptosis" EXACT [GOC:TermGenie] is_a: GO:1903624 ! regulation of DNA catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006309 ! apoptotic DNA fragmentation -relationship: regulates GO:0006309 ! apoptotic DNA fragmentation +intersection_of: RO:0002211 GO:0006309 ! regulates (processual) apoptotic DNA fragmentation +relationship: RO:0002211 GO:0006309 ! regulates (processual) apoptotic DNA fragmentation created_by: hjd creation_date: 2013-11-15T18:28:32Z @@ -124442,8 +123891,8 @@ synonym: "negative regulation of endonucleolytic DNA catabolic process involved is_a: GO:1902510 ! regulation of apoptotic DNA fragmentation is_a: GO:1903625 ! negative regulation of DNA catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006309 ! apoptotic DNA fragmentation -relationship: negatively_regulates GO:0006309 ! apoptotic DNA fragmentation +intersection_of: RO:0002212 GO:0006309 ! negatively regulates apoptotic DNA fragmentation +relationship: RO:0002212 GO:0006309 ! negatively regulates apoptotic DNA fragmentation created_by: hjd creation_date: 2013-11-15T18:28:41Z @@ -124479,8 +123928,8 @@ synonym: "upregulation of endonucleolytic DNA catabolic process involved in apop is_a: GO:1902510 ! regulation of apoptotic DNA fragmentation is_a: GO:1903626 ! positive regulation of DNA catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006309 ! apoptotic DNA fragmentation -relationship: positively_regulates GO:0006309 ! apoptotic DNA fragmentation +intersection_of: RO:0002213 GO:0006309 ! positively regulates apoptotic DNA fragmentation +relationship: RO:0002213 GO:0006309 ! positively regulates apoptotic DNA fragmentation created_by: hjd creation_date: 2013-11-15T18:28:50Z @@ -124493,8 +123942,8 @@ synonym: "regulation of microtubule-based organelle localization" EXACT [GOC:Ter is_a: GO:0032386 ! regulation of intracellular transport is_a: GO:0060632 ! regulation of microtubule-based movement intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072384 ! organelle transport along microtubule -relationship: regulates GO:0072384 ! organelle transport along microtubule +intersection_of: RO:0002211 GO:0072384 ! regulates (processual) organelle transport along microtubule +relationship: RO:0002211 GO:0072384 ! regulates (processual) organelle transport along microtubule created_by: dph creation_date: 2013-11-15T20:15:17Z @@ -124513,8 +123962,8 @@ synonym: "regulation of signal transduction via intracellular signaling cascade" synonym: "regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] is_a: GO:0009966 ! regulation of signal transduction intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035556 ! intracellular signal transduction -relationship: regulates GO:0035556 ! intracellular signal transduction +intersection_of: RO:0002211 GO:0035556 ! regulates (processual) intracellular signal transduction +relationship: RO:0002211 GO:0035556 ! regulates (processual) intracellular signal transduction created_by: bf creation_date: 2013-12-02T11:32:52Z @@ -124562,8 +124011,8 @@ synonym: "negative regulation of signal transmission via intracellular cascade" is_a: GO:0009968 ! negative regulation of signal transduction is_a: GO:1902531 ! regulation of intracellular signal transduction intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035556 ! intracellular signal transduction -relationship: negatively_regulates GO:0035556 ! intracellular signal transduction +intersection_of: RO:0002212 GO:0035556 ! negatively regulates intracellular signal transduction +relationship: RO:0002212 GO:0035556 ! negatively regulates intracellular signal transduction created_by: bf creation_date: 2013-12-02T11:33:01Z @@ -124611,8 +124060,8 @@ synonym: "upregulation of signal transmission via intracellular cascade" NARROW is_a: GO:0009967 ! positive regulation of signal transduction is_a: GO:1902531 ! regulation of intracellular signal transduction intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035556 ! intracellular signal transduction -relationship: positively_regulates GO:0035556 ! intracellular signal transduction +intersection_of: RO:0002213 GO:0035556 ! positively regulates intracellular signal transduction +relationship: RO:0002213 GO:0035556 ! positively regulates intracellular signal transduction created_by: bf creation_date: 2013-12-02T11:33:10Z @@ -124623,8 +124072,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of neutrophil activation." [GOC:TermGenie, PMID:17588661] is_a: GO:0002694 ! regulation of leukocyte activation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042119 ! neutrophil activation -relationship: regulates GO:0042119 ! neutrophil activation +intersection_of: RO:0002211 GO:0042119 ! regulates (processual) neutrophil activation +relationship: RO:0002211 GO:0042119 ! regulates (processual) neutrophil activation created_by: ecu creation_date: 2013-12-10T15:33:08Z @@ -124640,8 +124089,8 @@ synonym: "inhibition of neutrophil activation" NARROW [GOC:TermGenie] is_a: GO:0002695 ! negative regulation of leukocyte activation is_a: GO:1902563 ! regulation of neutrophil activation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042119 ! neutrophil activation -relationship: negatively_regulates GO:0042119 ! neutrophil activation +intersection_of: RO:0002212 GO:0042119 ! negatively regulates neutrophil activation +relationship: RO:0002212 GO:0042119 ! negatively regulates neutrophil activation created_by: ecu creation_date: 2013-12-10T15:33:16Z @@ -124657,8 +124106,8 @@ synonym: "upregulation of neutrophil activation" EXACT [GOC:TermGenie] is_a: GO:0002696 ! positive regulation of leukocyte activation is_a: GO:1902563 ! regulation of neutrophil activation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042119 ! neutrophil activation -relationship: positively_regulates GO:0042119 ! neutrophil activation +intersection_of: RO:0002213 GO:0042119 ! positively regulates neutrophil activation +relationship: RO:0002213 GO:0042119 ! positively regulates neutrophil activation created_by: ecu creation_date: 2013-12-10T15:33:26Z @@ -124672,8 +124121,8 @@ synonym: "protein localisation to nucleolus" EXACT [GOC:TermGenie] synonym: "protein localization in nucleolus" EXACT [GOC:TermGenie] is_a: GO:0034504 ! protein localization to nucleus intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005730 ! nucleolus -relationship: has_target_end_location GO:0005730 ! nucleolus +intersection_of: RO:0002339 GO:0005730 ! has target end location nucleolus +relationship: RO:0002339 GO:0005730 ! has target end location nucleolus created_by: mah creation_date: 2013-12-10T16:25:28Z @@ -124709,8 +124158,8 @@ synonym: "upregulation of response to water deprivation" EXACT [GOC:TermGenie] is_a: GO:0048584 ! positive regulation of response to stimulus is_a: GO:2000070 ! regulation of response to water deprivation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009414 ! response to water deprivation -relationship: positively_regulates GO:0009414 ! response to water deprivation +intersection_of: RO:0002213 GO:0009414 ! positively regulates response to water deprivation +relationship: RO:0002213 GO:0009414 ! positively regulates response to water deprivation created_by: tb creation_date: 2013-12-19T00:31:58Z @@ -124733,10 +124182,10 @@ synonym: "proton transport" BROAD [] is_a: GO:0098655 ! monoatomic cation transmembrane transport is_a: GO:0098662 ! inorganic cation transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:15378 ! hydron -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:15378 ! hydron -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:15378 ! has primary input hydron +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:15378 ! has primary input hydron created_by: pr creation_date: 2013-12-20T11:08:37Z @@ -124747,8 +124196,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of neutrophil migration." [GO_REF:0000058, GOC:TermGenie, PMID:1826836] is_a: GO:0002685 ! regulation of leukocyte migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990266 ! neutrophil migration -relationship: regulates GO:1990266 ! neutrophil migration +intersection_of: RO:0002211 GO:1990266 ! regulates (processual) neutrophil migration +relationship: RO:0002211 GO:1990266 ! regulates (processual) neutrophil migration created_by: sl creation_date: 2014-01-15T18:58:39Z @@ -124764,8 +124213,8 @@ synonym: "inhibition of neutrophil migration" NARROW [GOC:TermGenie] is_a: GO:0002686 ! negative regulation of leukocyte migration is_a: GO:1902622 ! regulation of neutrophil migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990266 ! neutrophil migration -relationship: negatively_regulates GO:1990266 ! neutrophil migration +intersection_of: RO:0002212 GO:1990266 ! negatively regulates neutrophil migration +relationship: RO:0002212 GO:1990266 ! negatively regulates neutrophil migration created_by: sl creation_date: 2014-01-15T18:58:49Z @@ -124781,8 +124230,8 @@ synonym: "upregulation of neutrophil migration" EXACT [GOC:TermGenie] is_a: GO:0002687 ! positive regulation of leukocyte migration is_a: GO:1902622 ! regulation of neutrophil migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990266 ! neutrophil migration -relationship: positively_regulates GO:1990266 ! neutrophil migration +intersection_of: RO:0002213 GO:1990266 ! positively regulates neutrophil migration +relationship: RO:0002213 GO:1990266 ! positively regulates neutrophil migration created_by: sl creation_date: 2014-01-15T18:58:58Z @@ -124817,8 +124266,8 @@ namespace: biological_process def: "The directed movement of calcium ion into a cytosol." [GO_REF:0000075, GOC:TermGenie, GOC:vw] synonym: "calcium import into cytosol" BROAD [] is_a: GO:0006816 ! calcium ion transport -relationship: has_primary_input CHEBI:29108 ! calcium(2+) -relationship: has_target_end_location GO:0005829 ! cytosol +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) created_by: pr creation_date: 2014-01-22T13:41:11Z @@ -124830,8 +124279,8 @@ def: "Binding to carbon dioxide." [GO_REF:0000067, GOC:bhm, GOC:TermGenie, PMID: synonym: "CO2 binding" EXACT [] is_a: GO:0036094 ! small molecule binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:16526 ! carbon dioxide -relationship: has_primary_input CHEBI:16526 ! carbon dioxide +intersection_of: RO:0004009 CHEBI:16526 ! has primary input carbon dioxide +relationship: RO:0004009 CHEBI:16526 ! has primary input carbon dioxide property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/21211" xsd:anyURI created_by: bhm creation_date: 2014-02-04T10:38:41Z @@ -124869,8 +124318,8 @@ is_a: GO:0010558 ! negative regulation of macromolecule biosynthetic process is_a: GO:0051253 ! negative regulation of RNA metabolic process is_a: GO:2001141 ! regulation of RNA biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032774 ! RNA biosynthetic process -relationship: negatively_regulates GO:0032774 ! RNA biosynthetic process +intersection_of: RO:0002212 GO:0032774 ! negatively regulates RNA biosynthetic process +relationship: RO:0002212 GO:0032774 ! negatively regulates RNA biosynthetic process created_by: jl creation_date: 2014-02-05T16:32:01Z @@ -124907,8 +124356,8 @@ is_a: GO:0010557 ! positive regulation of macromolecule biosynthetic process is_a: GO:0051254 ! positive regulation of RNA metabolic process is_a: GO:2001141 ! regulation of RNA biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032774 ! RNA biosynthetic process -relationship: positively_regulates GO:0032774 ! RNA biosynthetic process +intersection_of: RO:0002213 GO:0032774 ! positively regulates RNA biosynthetic process +relationship: RO:0002213 GO:0032774 ! positively regulates RNA biosynthetic process created_by: jl creation_date: 2014-02-05T16:32:10Z @@ -124920,8 +124369,8 @@ def: "Any process that modulates the frequency, rate or extent of receptor local synonym: "regulation of receptor localisation to synapse" EXACT [GOC:TermGenie] is_a: GO:0032879 ! regulation of localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0097120 ! receptor localization to synapse -relationship: regulates GO:0097120 ! receptor localization to synapse +intersection_of: RO:0002211 GO:0097120 ! regulates (processual) receptor localization to synapse +relationship: RO:0002211 GO:0097120 ! regulates (processual) receptor localization to synapse created_by: kmv creation_date: 2014-02-07T17:38:31Z @@ -124942,8 +124391,8 @@ synonym: "negative regulation of receptor localisation to synapse" EXACT [GOC:Te is_a: GO:0048519 ! negative regulation of biological process is_a: GO:1902683 ! regulation of receptor localization to synapse intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0097120 ! receptor localization to synapse -relationship: negatively_regulates GO:0097120 ! receptor localization to synapse +intersection_of: RO:0002212 GO:0097120 ! negatively regulates receptor localization to synapse +relationship: RO:0002212 GO:0097120 ! negatively regulates receptor localization to synapse created_by: kmv creation_date: 2014-02-07T17:38:41Z @@ -124964,8 +124413,8 @@ synonym: "upregulation of receptor localization to synapse" EXACT [GOC:TermGenie is_a: GO:0048518 ! positive regulation of biological process is_a: GO:1902683 ! regulation of receptor localization to synapse intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0097120 ! receptor localization to synapse -relationship: positively_regulates GO:0097120 ! receptor localization to synapse +intersection_of: RO:0002213 GO:0097120 ! positively regulates receptor localization to synapse +relationship: RO:0002213 GO:0097120 ! positively regulates receptor localization to synapse created_by: kmv creation_date: 2014-02-07T17:38:51Z @@ -124978,8 +124427,8 @@ comment: Changes in the lineage choice of ABCs or their undifferentiated daughte synonym: "airway basal cell differentiation" EXACT [MP:0011114] is_a: GO:0048863 ! stem cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002633 ! respiratory basal cell -relationship: results_in_acquisition_of_features_of CL:0002633 ! respiratory basal cell +intersection_of: RO:0002315 CL:0002633 ! results in acquisition of features of respiratory basal cell +relationship: RO:0002315 CL:0002633 ! results in acquisition of features of respiratory basal cell created_by: cjm creation_date: 2014-02-13T23:41:24Z @@ -124990,8 +124439,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of neuroblast proliferation." [GO_REF:0000058, GOC:PARL, GOC:rl, GOC:TermGenie, PMID:21168496] is_a: GO:2000177 ! regulation of neural precursor cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007405 ! neuroblast proliferation -relationship: regulates GO:0007405 ! neuroblast proliferation +intersection_of: RO:0002211 GO:0007405 ! regulates (processual) neuroblast proliferation +relationship: RO:0002211 GO:0007405 ! regulates (processual) neuroblast proliferation created_by: rl creation_date: 2014-02-18T10:03:31Z @@ -125020,8 +124469,8 @@ synonym: "inhibition of prolactin secretion" NARROW [GOC:TermGenie] is_a: GO:0050709 ! negative regulation of protein secretion is_a: GO:0090278 ! negative regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070459 ! prolactin secretion -relationship: negatively_regulates GO:0070459 ! prolactin secretion +intersection_of: RO:0002212 GO:0070459 ! negatively regulates prolactin secretion +relationship: RO:0002212 GO:0070459 ! negatively regulates prolactin secretion created_by: mr creation_date: 2014-02-24T16:09:28Z @@ -125037,8 +124486,8 @@ synonym: "upregulation of prolactin secretion" EXACT [GOC:TermGenie] is_a: GO:0050714 ! positive regulation of protein secretion is_a: GO:0090277 ! positive regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070459 ! prolactin secretion -relationship: positively_regulates GO:0070459 ! prolactin secretion +intersection_of: RO:0002213 GO:0070459 ! positively regulates prolactin secretion +relationship: RO:0002213 GO:0070459 ! positively regulates prolactin secretion created_by: mr creation_date: 2014-02-24T16:09:37Z @@ -125073,8 +124522,8 @@ synonym: "negative regulation of proteoglycan formation" EXACT [GOC:TermGenie] synonym: "negative regulation of proteoglycan synthesis" EXACT [GOC:TermGenie] is_a: GO:0010561 ! negative regulation of glycoprotein biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030166 ! proteoglycan biosynthetic process -relationship: negatively_regulates GO:0030166 ! proteoglycan biosynthetic process +intersection_of: RO:0002212 GO:0030166 ! negatively regulates proteoglycan biosynthetic process +relationship: RO:0002212 GO:0030166 ! negatively regulates proteoglycan biosynthetic process created_by: mr creation_date: 2014-02-24T16:10:43Z @@ -125109,8 +124558,8 @@ synonym: "upregulation of proteoglycan formation" EXACT [GOC:TermGenie] synonym: "upregulation of proteoglycan synthesis" EXACT [GOC:TermGenie] is_a: GO:0010560 ! positive regulation of glycoprotein biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030166 ! proteoglycan biosynthetic process -relationship: positively_regulates GO:0030166 ! proteoglycan biosynthetic process +intersection_of: RO:0002213 GO:0030166 ! positively regulates proteoglycan biosynthetic process +relationship: RO:0002213 GO:0030166 ! positively regulates proteoglycan biosynthetic process created_by: mr creation_date: 2014-02-24T16:10:52Z @@ -125121,8 +124570,8 @@ namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of the process in which a chondroblast acquires specialized structural and/or functional features of a chondrocyte that will contribute to the growth of a bone. A chondrocyte is a polymorphic cell that forms cartilage." [GO_REF:0000058, GOC:TermGenie, PMID:23212449] is_a: GO:1902738 ! regulation of chondrocyte differentiation involved in endochondral bone morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003418 ! growth plate cartilage chondrocyte differentiation -relationship: regulates GO:0003418 ! growth plate cartilage chondrocyte differentiation +intersection_of: RO:0002211 GO:0003418 ! regulates (processual) growth plate cartilage chondrocyte differentiation +relationship: RO:0002211 GO:0003418 ! regulates (processual) growth plate cartilage chondrocyte differentiation created_by: mr creation_date: 2014-02-24T16:11:28Z @@ -125135,8 +124584,8 @@ is_a: GO:0032330 ! regulation of chondrocyte differentiation is_a: GO:1903010 ! regulation of bone development is_a: GO:2000027 ! regulation of animal organ morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003413 ! chondrocyte differentiation involved in endochondral bone morphogenesis -relationship: regulates GO:0003413 ! chondrocyte differentiation involved in endochondral bone morphogenesis +intersection_of: RO:0002211 GO:0003413 ! regulates (processual) chondrocyte differentiation involved in endochondral bone morphogenesis +relationship: RO:0002211 GO:0003413 ! regulates (processual) chondrocyte differentiation involved in endochondral bone morphogenesis created_by: mr creation_date: 2014-02-26T15:36:15Z @@ -125188,8 +124637,8 @@ def: "Any process that modulates the frequency, rate or extent of lens fiber cel synonym: "regulation of lens fibre cell differentiation" EXACT [GOC:TermGenie] is_a: GO:0030856 ! regulation of epithelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070306 ! lens fiber cell differentiation -relationship: regulates GO:0070306 ! lens fiber cell differentiation +intersection_of: RO:0002211 GO:0070306 ! regulates (processual) lens fiber cell differentiation +relationship: RO:0002211 GO:0070306 ! regulates (processual) lens fiber cell differentiation created_by: mr creation_date: 2014-03-03T23:18:50Z @@ -125211,9 +124660,9 @@ is_a: GO:0030857 ! negative regulation of epithelial cell differentiation is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1902746 ! regulation of lens fiber cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070306 ! lens fiber cell differentiation -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0070306 ! lens fiber cell differentiation +intersection_of: RO:0002212 GO:0070306 ! negatively regulates lens fiber cell differentiation +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0070306 ! negatively regulates lens fiber cell differentiation created_by: mr creation_date: 2014-03-03T23:19:32Z @@ -125235,9 +124684,9 @@ is_a: GO:0030858 ! positive regulation of epithelial cell differentiation is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1902746 ! regulation of lens fiber cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070306 ! lens fiber cell differentiation -relationship: positively_regulates GO:0032501 ! multicellular organismal process -relationship: positively_regulates GO:0070306 ! lens fiber cell differentiation +intersection_of: RO:0002213 GO:0070306 ! positively regulates lens fiber cell differentiation +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process +relationship: RO:0002213 GO:0070306 ! positively regulates lens fiber cell differentiation created_by: mr creation_date: 2014-03-03T23:20:12Z @@ -125254,8 +124703,8 @@ is_a: GO:0010720 ! positive regulation of cell development is_a: GO:0032332 ! positive regulation of chondrocyte differentiation is_a: GO:0061181 ! regulation of chondrocyte development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002063 ! chondrocyte development -relationship: positively_regulates GO:0002063 ! chondrocyte development +intersection_of: RO:0002213 GO:0002063 ! positively regulates chondrocyte development +relationship: RO:0002213 GO:0002063 ! positively regulates chondrocyte development created_by: mr creation_date: 2014-03-07T17:45:55Z @@ -125268,8 +124717,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "process resulting in tolerance to alkane" NARROW [] is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:18310 ! alkane -relationship: has_primary_input CHEBI:18310 ! alkane +intersection_of: RO:0004009 CHEBI:18310 ! has primary input alkane +relationship: RO:0004009 CHEBI:18310 ! has primary input alkane [Term] id: GO:1902779 @@ -125279,8 +124728,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:0070887 ! cellular response to chemical stimulus is_a: GO:1902778 ! response to alkane intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:18310 ! alkane -relationship: has_primary_input CHEBI:18310 ! alkane +intersection_of: RO:0004009 CHEBI:18310 ! has primary input alkane +relationship: RO:0004009 CHEBI:18310 ! has primary input alkane created_by: tt creation_date: 2014-03-21T03:18:04Z @@ -125292,8 +124741,8 @@ def: "Any process that modulates the frequency, rate or extent of skeletal muscl is_a: GO:0010830 ! regulation of myotube differentiation is_a: GO:2001014 ! regulation of skeletal muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0098528 ! skeletal muscle fiber differentiation -relationship: regulates GO:0098528 ! skeletal muscle fiber differentiation +intersection_of: RO:0002211 GO:0098528 ! regulates (processual) skeletal muscle fiber differentiation +relationship: RO:0002211 GO:0098528 ! regulates (processual) skeletal muscle fiber differentiation created_by: mr creation_date: 2014-03-26T21:18:26Z @@ -125310,8 +124759,8 @@ is_a: GO:0010832 ! negative regulation of myotube differentiation is_a: GO:1902809 ! regulation of skeletal muscle fiber differentiation is_a: GO:2001015 ! negative regulation of skeletal muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0098528 ! skeletal muscle fiber differentiation -relationship: negatively_regulates GO:0098528 ! skeletal muscle fiber differentiation +intersection_of: RO:0002212 GO:0098528 ! negatively regulates skeletal muscle fiber differentiation +relationship: RO:0002212 GO:0098528 ! negatively regulates skeletal muscle fiber differentiation created_by: mr creation_date: 2014-03-26T21:18:32Z @@ -125328,8 +124777,8 @@ is_a: GO:0010831 ! positive regulation of myotube differentiation is_a: GO:1902809 ! regulation of skeletal muscle fiber differentiation is_a: GO:2001016 ! positive regulation of skeletal muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0098528 ! skeletal muscle fiber differentiation -relationship: positively_regulates GO:0098528 ! skeletal muscle fiber differentiation +intersection_of: RO:0002213 GO:0098528 ! positively regulates skeletal muscle fiber differentiation +relationship: RO:0002213 GO:0098528 ! positively regulates skeletal muscle fiber differentiation created_by: mr creation_date: 2014-03-26T21:18:38Z @@ -125341,8 +124790,8 @@ def: "Any process that modulates the frequency, rate or extent of protein locali synonym: "regulation of protein localisation to microtubule" EXACT [GOC:TermGenie] is_a: GO:0032880 ! regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035372 ! protein localization to microtubule -relationship: regulates GO:0035372 ! protein localization to microtubule +intersection_of: RO:0002211 GO:0035372 ! regulates (processual) protein localization to microtubule +relationship: RO:0002211 GO:0035372 ! regulates (processual) protein localization to microtubule created_by: tb creation_date: 2014-03-27T22:07:12Z @@ -125363,8 +124812,8 @@ synonym: "negative regulation of protein localisation to microtubule" EXACT [GOC is_a: GO:1902816 ! regulation of protein localization to microtubule is_a: GO:1903828 ! negative regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035372 ! protein localization to microtubule -relationship: negatively_regulates GO:0035372 ! protein localization to microtubule +intersection_of: RO:0002212 GO:0035372 ! negatively regulates protein localization to microtubule +relationship: RO:0002212 GO:0035372 ! negatively regulates protein localization to microtubule created_by: tb creation_date: 2014-03-27T22:07:18Z @@ -125380,8 +124829,8 @@ synonym: "inhibition of cell proliferation in dorsal spinal cord" NARROW [GOC:Te is_a: GO:0021921 ! regulation of cell proliferation in dorsal spinal cord is_a: GO:2000178 ! negative regulation of neural precursor cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0010456 ! cell proliferation in dorsal spinal cord -relationship: negatively_regulates GO:0010456 ! cell proliferation in dorsal spinal cord +intersection_of: RO:0002212 GO:0010456 ! negatively regulates cell proliferation in dorsal spinal cord +relationship: RO:0002212 GO:0010456 ! negatively regulates cell proliferation in dorsal spinal cord created_by: mr creation_date: 2014-03-31T17:42:50Z @@ -125397,8 +124846,8 @@ synonym: "upregulation of cell proliferation in dorsal spinal cord" EXACT [GOC:T is_a: GO:0021921 ! regulation of cell proliferation in dorsal spinal cord is_a: GO:2000179 ! positive regulation of neural precursor cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0010456 ! cell proliferation in dorsal spinal cord -relationship: positively_regulates GO:0010456 ! cell proliferation in dorsal spinal cord +intersection_of: RO:0002213 GO:0010456 ! positively regulates cell proliferation in dorsal spinal cord +relationship: RO:0002213 GO:0010456 ! positively regulates cell proliferation in dorsal spinal cord created_by: mr creation_date: 2014-03-31T17:43:33Z @@ -125419,8 +124868,8 @@ synonym: "regulation of transport of nucleus by microtubules" EXACT [GOC:TermGen synonym: "regulation of transport of nucleus, microtubule-mediated" EXACT [GOC:TermGenie] is_a: GO:1902513 ! regulation of organelle transport along microtubule intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030473 ! nuclear migration along microtubule -relationship: regulates GO:0030473 ! nuclear migration along microtubule +intersection_of: RO:0002211 GO:0030473 ! regulates (processual) nuclear migration along microtubule +relationship: RO:0002211 GO:0030473 ! regulates (processual) nuclear migration along microtubule created_by: vw creation_date: 2014-04-01T13:50:23Z @@ -125476,8 +124925,8 @@ synonym: "negative regulation of transport of nucleus, microtubule-mediated" EXA is_a: GO:0032387 ! negative regulation of intracellular transport is_a: GO:1902838 ! regulation of nuclear migration along microtubule intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030473 ! nuclear migration along microtubule -relationship: negatively_regulates GO:0030473 ! nuclear migration along microtubule +intersection_of: RO:0002212 GO:0030473 ! negatively regulates nuclear migration along microtubule +relationship: RO:0002212 GO:0030473 ! negatively regulates nuclear migration along microtubule created_by: vw creation_date: 2014-04-01T13:50:29Z @@ -125533,8 +124982,8 @@ synonym: "upregulation of transport of nucleus, microtubule-mediated" EXACT [GOC is_a: GO:0032388 ! positive regulation of intracellular transport is_a: GO:1902838 ! regulation of nuclear migration along microtubule intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030473 ! nuclear migration along microtubule -relationship: positively_regulates GO:0030473 ! nuclear migration along microtubule +intersection_of: RO:0002213 GO:0030473 ! positively regulates nuclear migration along microtubule +relationship: RO:0002213 GO:0030473 ! positively regulates nuclear migration along microtubule created_by: vw creation_date: 2014-04-01T13:50:35Z @@ -125566,8 +125015,8 @@ synonym: "regulation of sensory cilium assembly" RELATED [GOC:TermGenie] synonym: "regulation of sensory cilium biogenesis" RELATED [GOC:TermGenie] is_a: GO:1902017 ! regulation of cilium assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1905515 ! non-motile cilium assembly -relationship: regulates GO:1905515 ! non-motile cilium assembly +intersection_of: RO:0002211 GO:1905515 ! regulates (processual) non-motile cilium assembly +relationship: RO:0002211 GO:1905515 ! regulates (processual) non-motile cilium assembly created_by: kmv creation_date: 2014-04-02T15:41:57Z @@ -125604,8 +125053,8 @@ synonym: "negative regulation of sensory cilium biogenesis" RELATED [GOC:TermGen is_a: GO:1902018 ! negative regulation of cilium assembly is_a: GO:1902855 ! regulation of non-motile cilium assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1905515 ! non-motile cilium assembly -relationship: negatively_regulates GO:1905515 ! non-motile cilium assembly +intersection_of: RO:0002212 GO:1905515 ! negatively regulates non-motile cilium assembly +relationship: RO:0002212 GO:1905515 ! negatively regulates non-motile cilium assembly created_by: kmv creation_date: 2014-04-02T15:42:17Z @@ -125642,8 +125091,8 @@ synonym: "upregulation of sensory cilium biogenesis" RELATED [GOC:TermGenie] is_a: GO:0045724 ! positive regulation of cilium assembly is_a: GO:1902855 ! regulation of non-motile cilium assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1905515 ! non-motile cilium assembly -relationship: positively_regulates GO:1905515 ! non-motile cilium assembly +intersection_of: RO:0002213 GO:1905515 ! positively regulates non-motile cilium assembly +relationship: RO:0002213 GO:1905515 ! positively regulates non-motile cilium assembly created_by: kmv creation_date: 2014-04-02T15:42:31Z @@ -125655,8 +125104,8 @@ def: "Any process that modulates the frequency, rate or extent of embryonic came synonym: "regulation of embryonic eye development" EXACT [GOC:TermGenie] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0031076 ! embryonic camera-type eye development -relationship: regulates GO:0031076 ! embryonic camera-type eye development +intersection_of: RO:0002211 GO:0031076 ! regulates (processual) embryonic camera-type eye development +relationship: RO:0002211 GO:0031076 ! regulates (processual) embryonic camera-type eye development created_by: mr creation_date: 2014-04-03T15:24:00Z @@ -125677,8 +125126,8 @@ synonym: "negative regulation of embryonic eye development" EXACT [GOC:TermGenie is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:1902863 ! regulation of embryonic camera-type eye development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0031076 ! embryonic camera-type eye development -relationship: negatively_regulates GO:0031076 ! embryonic camera-type eye development +intersection_of: RO:0002212 GO:0031076 ! negatively regulates embryonic camera-type eye development +relationship: RO:0002212 GO:0031076 ! negatively regulates embryonic camera-type eye development created_by: mr creation_date: 2014-04-03T15:24:06Z @@ -125699,8 +125148,8 @@ synonym: "upregulation of embryonic eye development" EXACT [GOC:TermGenie] is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:1902863 ! regulation of embryonic camera-type eye development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0031076 ! embryonic camera-type eye development -relationship: positively_regulates GO:0031076 ! embryonic camera-type eye development +intersection_of: RO:0002213 GO:0031076 ! positively regulates embryonic camera-type eye development +relationship: RO:0002213 GO:0031076 ! positively regulates embryonic camera-type eye development created_by: mr creation_date: 2014-04-03T15:24:12Z @@ -125713,8 +125162,8 @@ synonym: "regulation of retina development in camera-style eye" EXACT [GOC:TermG synonym: "regulation of retinal development" RELATED [GOC:TermGenie] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060041 ! retina development in camera-type eye -relationship: regulates GO:0060041 ! retina development in camera-type eye +intersection_of: RO:0002211 GO:0060041 ! regulates (processual) retina development in camera-type eye +relationship: RO:0002211 GO:0060041 ! regulates (processual) retina development in camera-type eye created_by: mr creation_date: 2014-04-03T15:24:17Z @@ -125741,9 +125190,9 @@ is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1902866 ! regulation of retina development in camera-type eye intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060041 ! retina development in camera-type eye -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0060041 ! retina development in camera-type eye +intersection_of: RO:0002212 GO:0060041 ! negatively regulates retina development in camera-type eye +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0060041 ! negatively regulates retina development in camera-type eye created_by: mr creation_date: 2014-04-03T15:24:23Z @@ -125770,9 +125219,9 @@ is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1902866 ! regulation of retina development in camera-type eye intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060041 ! retina development in camera-type eye -relationship: positively_regulates GO:0032501 ! multicellular organismal process -relationship: positively_regulates GO:0060041 ! retina development in camera-type eye +intersection_of: RO:0002213 GO:0060041 ! positively regulates retina development in camera-type eye +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process +relationship: RO:0002213 GO:0060041 ! positively regulates retina development in camera-type eye created_by: mr creation_date: 2014-04-03T15:24:29Z @@ -125784,8 +125233,8 @@ def: "Any process that modulates the frequency, rate or extent of amacrine cell synonym: "regulation of amacrine neuron differentiation" EXACT [GOC:TermGenie] is_a: GO:0045664 ! regulation of neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035881 ! amacrine cell differentiation -relationship: regulates GO:0035881 ! amacrine cell differentiation +intersection_of: RO:0002211 GO:0035881 ! regulates (processual) amacrine cell differentiation +relationship: RO:0002211 GO:0035881 ! regulates (processual) amacrine cell differentiation created_by: mr creation_date: 2014-04-03T15:24:35Z @@ -125806,8 +125255,8 @@ synonym: "negative regulation of amacrine neuron differentiation" EXACT [GOC:Ter is_a: GO:0045665 ! negative regulation of neuron differentiation is_a: GO:1902869 ! regulation of amacrine cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035881 ! amacrine cell differentiation -relationship: negatively_regulates GO:0035881 ! amacrine cell differentiation +intersection_of: RO:0002212 GO:0035881 ! negatively regulates amacrine cell differentiation +relationship: RO:0002212 GO:0035881 ! negatively regulates amacrine cell differentiation created_by: mr creation_date: 2014-04-03T15:24:40Z @@ -125828,8 +125277,8 @@ synonym: "upregulation of amacrine neuron differentiation" EXACT [GOC:TermGenie] is_a: GO:0045666 ! positive regulation of neuron differentiation is_a: GO:1902869 ! regulation of amacrine cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035881 ! amacrine cell differentiation -relationship: positively_regulates GO:0035881 ! amacrine cell differentiation +intersection_of: RO:0002213 GO:0035881 ! positively regulates amacrine cell differentiation +relationship: RO:0002213 GO:0035881 ! positively regulates amacrine cell differentiation created_by: mr creation_date: 2014-04-03T15:24:46Z @@ -125843,8 +125292,8 @@ synonym: "regulation of embryonic pattern formation" BROAD [GOC:TermGenie] synonym: "regulation of ventral/lateral system" RELATED [GOC:TermGenie] is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009880 ! embryonic pattern specification -relationship: regulates GO:0009880 ! embryonic pattern specification +intersection_of: RO:0002211 GO:0009880 ! regulates (processual) embryonic pattern specification +relationship: RO:0002211 GO:0009880 ! regulates (processual) embryonic pattern specification created_by: mr creation_date: 2014-04-03T15:25:15Z @@ -125865,8 +125314,8 @@ synonym: "negative regulation of ventral/lateral system" RELATED [GOC:TermGenie] is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1902875 ! regulation of embryonic pattern specification intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009880 ! embryonic pattern specification -relationship: negatively_regulates GO:0009880 ! embryonic pattern specification +intersection_of: RO:0002212 GO:0009880 ! negatively regulates embryonic pattern specification +relationship: RO:0002212 GO:0009880 ! negatively regulates embryonic pattern specification created_by: mr creation_date: 2014-04-03T15:25:20Z @@ -125887,8 +125336,8 @@ synonym: "upregulation of ventral/lateral system" RELATED [GOC:TermGenie] is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1902875 ! regulation of embryonic pattern specification intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009880 ! embryonic pattern specification -relationship: positively_regulates GO:0009880 ! embryonic pattern specification +intersection_of: RO:0002213 GO:0009880 ! positively regulates embryonic pattern specification +relationship: RO:0002213 GO:0009880 ! positively regulates embryonic pattern specification created_by: mr creation_date: 2014-04-03T15:25:26Z @@ -125901,8 +125350,8 @@ comment: HSPA8, human, P11142 in PMID:23921388 inferred from direct assay to neg synonym: "regulation of fibril organisation" RELATED [GOC:TermGenie] is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0097435 ! supramolecular fiber organization -relationship: regulates GO:0097435 ! supramolecular fiber organization +intersection_of: RO:0002211 GO:0097435 ! regulates (processual) supramolecular fiber organization +relationship: RO:0002211 GO:0097435 ! regulates (processual) supramolecular fiber organization created_by: rl creation_date: 2014-04-15T16:46:36Z @@ -125924,8 +125373,8 @@ synonym: "negative regulation of fibril organisation" RELATED [GOC:TermGenie] is_a: GO:0051129 ! negative regulation of cellular component organization is_a: GO:1902903 ! regulation of supramolecular fiber organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0097435 ! supramolecular fiber organization -relationship: negatively_regulates GO:0097435 ! supramolecular fiber organization +intersection_of: RO:0002212 GO:0097435 ! negatively regulates supramolecular fiber organization +relationship: RO:0002212 GO:0097435 ! negatively regulates supramolecular fiber organization created_by: rl creation_date: 2014-04-15T16:46:42Z @@ -125947,8 +125396,8 @@ synonym: "upregulation of fibril organization" RELATED [GOC:TermGenie] is_a: GO:0051130 ! positive regulation of cellular component organization is_a: GO:1902903 ! regulation of supramolecular fiber organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0097435 ! supramolecular fiber organization -relationship: positively_regulates GO:0097435 ! supramolecular fiber organization +intersection_of: RO:0002213 GO:0097435 ! positively regulates supramolecular fiber organization +relationship: RO:0002213 GO:0097435 ! positively regulates supramolecular fiber organization created_by: rl creation_date: 2014-04-15T16:46:48Z @@ -125960,9 +125409,9 @@ def: "Any process that modulates the frequency, rate or extent of melanosome tra is_a: GO:0050794 ! regulation of cellular process is_a: GO:0051049 ! regulation of transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032402 ! melanosome transport -relationship: regulates GO:0009987 ! cellular process -relationship: regulates GO:0032402 ! melanosome transport +intersection_of: RO:0002211 GO:0032402 ! regulates (processual) melanosome transport +relationship: RO:0002211 GO:0009987 ! regulates (processual) cellular process +relationship: RO:0002211 GO:0032402 ! regulates (processual) melanosome transport created_by: als creation_date: 2014-04-17T11:40:16Z @@ -125979,9 +125428,9 @@ is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:0051051 ! negative regulation of transport is_a: GO:1902908 ! regulation of melanosome transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032402 ! melanosome transport -relationship: negatively_regulates GO:0009987 ! cellular process -relationship: negatively_regulates GO:0032402 ! melanosome transport +intersection_of: RO:0002212 GO:0032402 ! negatively regulates melanosome transport +relationship: RO:0002212 GO:0009987 ! negatively regulates cellular process +relationship: RO:0002212 GO:0032402 ! negatively regulates melanosome transport created_by: als creation_date: 2014-04-17T11:40:28Z @@ -125998,9 +125447,9 @@ is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0051050 ! positive regulation of transport is_a: GO:1902908 ! regulation of melanosome transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032402 ! melanosome transport -relationship: positively_regulates GO:0009987 ! cellular process -relationship: positively_regulates GO:0032402 ! melanosome transport +intersection_of: RO:0002213 GO:0032402 ! positively regulates melanosome transport +relationship: RO:0002213 GO:0009987 ! positively regulates cellular process +relationship: RO:0002213 GO:0032402 ! positively regulates melanosome transport created_by: als creation_date: 2014-04-17T11:40:34Z @@ -126028,8 +125477,8 @@ synonym: "up-regulation of neuroepithelial cell differentiation" EXACT [GOC:Term synonym: "upregulation of neuroepithelial cell differentiation" EXACT [GOC:TermGenie] is_a: GO:0030858 ! positive regulation of epithelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060563 ! neuroepithelial cell differentiation -relationship: positively_regulates GO:0060563 ! neuroepithelial cell differentiation +intersection_of: RO:0002213 GO:0060563 ! positively regulates neuroepithelial cell differentiation +relationship: RO:0002213 GO:0060563 ! positively regulates neuroepithelial cell differentiation created_by: mr creation_date: 2014-04-18T21:06:42Z @@ -126046,8 +125495,8 @@ synonym: "regulation of solventogenesis" BROAD [] is_a: GO:0009889 ! regulation of biosynthetic process is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0046165 ! alcohol biosynthetic process -relationship: regulates GO:0046165 ! alcohol biosynthetic process +intersection_of: RO:0002211 GO:0046165 ! regulates (processual) alcohol biosynthetic process +relationship: RO:0002211 GO:0046165 ! regulates (processual) alcohol biosynthetic process created_by: tt creation_date: 2014-04-22T21:55:03Z @@ -126085,8 +125534,8 @@ is_a: GO:0009890 ! negative regulation of biosynthetic process is_a: GO:0062014 ! negative regulation of small molecule metabolic process is_a: GO:1902930 ! regulation of alcohol biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0046165 ! alcohol biosynthetic process -relationship: negatively_regulates GO:0046165 ! alcohol biosynthetic process +intersection_of: RO:0002212 GO:0046165 ! negatively regulates alcohol biosynthetic process +relationship: RO:0002212 GO:0046165 ! negatively regulates alcohol biosynthetic process created_by: tt creation_date: 2014-04-22T21:55:13Z @@ -126124,8 +125573,8 @@ is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:0062013 ! positive regulation of small molecule metabolic process is_a: GO:1902930 ! regulation of alcohol biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0046165 ! alcohol biosynthetic process -relationship: positively_regulates GO:0046165 ! alcohol biosynthetic process +intersection_of: RO:0002213 GO:0046165 ! positively regulates alcohol biosynthetic process +relationship: RO:0002213 GO:0046165 ! positively regulates alcohol biosynthetic process created_by: tt creation_date: 2014-04-22T21:55:19Z @@ -126138,10 +125587,10 @@ synonym: "regulation of lipid transport across blood brain barrier" EXACT [] is_a: GO:0032368 ! regulation of lipid transport is_a: GO:0150200 ! regulation of transport across blood-brain barrier intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990379 ! lipid transport across blood-brain barrier +intersection_of: RO:0002211 GO:1990379 ! regulates (processual) lipid transport across blood-brain barrier relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa -relationship: regulates GO:1990379 ! lipid transport across blood-brain barrier +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa +relationship: RO:0002211 GO:1990379 ! regulates (processual) lipid transport across blood-brain barrier created_by: sjp creation_date: 2014-05-09T09:30:04Z @@ -126159,8 +125608,8 @@ is_a: GO:0032369 ! negative regulation of lipid transport is_a: GO:0150202 ! negative regulation of transport across blood-brain barrier is_a: GO:1903000 ! regulation of lipid transport across blood-brain barrier intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990379 ! lipid transport across blood-brain barrier -relationship: negatively_regulates GO:1990379 ! lipid transport across blood-brain barrier +intersection_of: RO:0002212 GO:1990379 ! negatively regulates lipid transport across blood-brain barrier +relationship: RO:0002212 GO:1990379 ! negatively regulates lipid transport across blood-brain barrier created_by: sjp creation_date: 2014-05-09T09:30:10Z @@ -126178,8 +125627,8 @@ is_a: GO:0032370 ! positive regulation of lipid transport is_a: GO:0150201 ! positive regulation of transport across blood-brain barrier is_a: GO:1903000 ! regulation of lipid transport across blood-brain barrier intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990379 ! lipid transport across blood-brain barrier -relationship: positively_regulates GO:1990379 ! lipid transport across blood-brain barrier +intersection_of: RO:0002213 GO:1990379 ! positively regulates lipid transport across blood-brain barrier +relationship: RO:0002213 GO:1990379 ! positively regulates lipid transport across blood-brain barrier created_by: sjp creation_date: 2014-05-09T09:30:16Z @@ -126192,8 +125641,8 @@ synonym: "organelle degradation" EXACT [] is_a: GO:0006996 ! organelle organization is_a: GO:0022411 ! cellular component disassembly intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0043226 ! organelle -relationship: results_in_disassembly_of GO:0043226 ! organelle +intersection_of: RO:0002590 GO:0043226 ! results in disassembly of organelle +relationship: RO:0002590 GO:0043226 ! results in disassembly of organelle created_by: jl creation_date: 2014-05-13T12:36:03Z @@ -126204,8 +125653,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of bone development." [GO_REF:0000058, GOC:mr, GOC:TermGenie, PMID:22510437] is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060348 ! bone development -relationship: regulates GO:0060348 ! bone development +intersection_of: RO:0002211 GO:0060348 ! regulates (processual) bone development +relationship: RO:0002211 GO:0060348 ! regulates (processual) bone development created_by: mr creation_date: 2014-05-13T22:41:53Z @@ -126222,8 +125671,8 @@ is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1903010 ! regulation of bone development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060348 ! bone development -relationship: negatively_regulates GO:0060348 ! bone development +intersection_of: RO:0002212 GO:0060348 ! negatively regulates bone development +relationship: RO:0002212 GO:0060348 ! negatively regulates bone development created_by: mr creation_date: 2014-05-13T22:42:00Z @@ -126240,8 +125689,8 @@ is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1903010 ! regulation of bone development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060348 ! bone development -relationship: positively_regulates GO:0060348 ! bone development +intersection_of: RO:0002213 GO:0060348 ! positively regulates bone development +relationship: RO:0002213 GO:0060348 ! positively regulates bone development created_by: mr creation_date: 2014-05-13T22:42:06Z @@ -126254,8 +125703,8 @@ comment: human serum amyloid P component (SAP) P02743 inhibits viral neuraminida synonym: "regulation of glycoprotein metabolism" EXACT [GOC:TermGenie] is_a: GO:0060255 ! regulation of macromolecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009100 ! glycoprotein metabolic process -relationship: regulates GO:0009100 ! glycoprotein metabolic process +intersection_of: RO:0002211 GO:0009100 ! regulates (processual) glycoprotein metabolic process +relationship: RO:0002211 GO:0009100 ! regulates (processual) glycoprotein metabolic process created_by: rl creation_date: 2014-05-14T18:44:19Z @@ -126277,8 +125726,8 @@ synonym: "negative regulation of glycoprotein metabolism" EXACT [GOC:TermGenie] is_a: GO:0010605 ! negative regulation of macromolecule metabolic process is_a: GO:1903018 ! regulation of glycoprotein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009100 ! glycoprotein metabolic process -relationship: negatively_regulates GO:0009100 ! glycoprotein metabolic process +intersection_of: RO:0002212 GO:0009100 ! negatively regulates glycoprotein metabolic process +relationship: RO:0002212 GO:0009100 ! negatively regulates glycoprotein metabolic process created_by: rl creation_date: 2014-05-14T18:44:25Z @@ -126300,42 +125749,11 @@ synonym: "upregulation of glycoprotein metabolism" EXACT [GOC:TermGenie] is_a: GO:0010604 ! positive regulation of macromolecule metabolic process is_a: GO:1903018 ! regulation of glycoprotein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009100 ! glycoprotein metabolic process -relationship: positively_regulates GO:0009100 ! glycoprotein metabolic process +intersection_of: RO:0002213 GO:0009100 ! positively regulates glycoprotein metabolic process +relationship: RO:0002213 GO:0009100 ! positively regulates glycoprotein metabolic process created_by: rl creation_date: 2014-05-14T18:44:31Z -[Term] -id: GO:1903025 -name: regulation of RNA polymerase II regulatory region sequence-specific DNA binding -namespace: biological_process -def: "Any process that modulates the frequency, rate or extent of RNA polymerase II regulatory region sequence-specific DNA binding." [GO_REF:0000059, GOC:dph, GOC:krc, GOC:TermGenie, PMID:20026326] -subset: gocheck_do_not_annotate -is_a: GO:2000677 ! regulation of transcription regulatory region DNA binding -intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0000977 ! RNA polymerase II transcription regulatory region sequence-specific DNA binding -relationship: regulates GO:0000977 ! RNA polymerase II transcription regulatory region sequence-specific DNA binding -created_by: dph -creation_date: 2014-05-15T17:55:54Z - -[Term] -id: GO:1903026 -name: negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding -namespace: biological_process -def: "Any process that stops, prevents or reduces the frequency, rate or extent of RNA polymerase II regulatory region sequence-specific DNA binding." [GO_REF:0000059, GOC:dph, GOC:krc, GOC:TermGenie, PMID:20026326] -subset: gocheck_do_not_annotate -synonym: "down regulation of RNA polymerase II regulatory region sequence-specific DNA binding" EXACT [GOC:TermGenie] -synonym: "down-regulation of RNA polymerase II regulatory region sequence-specific DNA binding" EXACT [GOC:TermGenie] -synonym: "downregulation of RNA polymerase II regulatory region sequence-specific DNA binding" EXACT [GOC:TermGenie] -synonym: "inhibition of RNA polymerase II regulatory region sequence-specific DNA binding" NARROW [GOC:TermGenie] -is_a: GO:1903025 ! regulation of RNA polymerase II regulatory region sequence-specific DNA binding -is_a: GO:2000678 ! negative regulation of transcription regulatory region DNA binding -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0000977 ! RNA polymerase II transcription regulatory region sequence-specific DNA binding -relationship: negatively_regulates GO:0000977 ! RNA polymerase II transcription regulatory region sequence-specific DNA binding -created_by: dph -creation_date: 2014-05-15T17:56:00Z - [Term] id: GO:1903034 name: regulation of response to wounding @@ -126344,8 +125762,8 @@ def: "Any process that modulates the frequency, rate or extent of response to wo synonym: "regulation of physiological response to wounding" EXACT [GOC:TermGenie] is_a: GO:0080134 ! regulation of response to stress intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009611 ! response to wounding -relationship: regulates GO:0009611 ! response to wounding +intersection_of: RO:0002211 GO:0009611 ! regulates (processual) response to wounding +relationship: RO:0002211 GO:0009611 ! regulates (processual) response to wounding created_by: kmv creation_date: 2014-05-18T01:28:46Z @@ -126366,8 +125784,8 @@ synonym: "negative regulation of physiological response to wounding" EXACT [GOC: is_a: GO:0048585 ! negative regulation of response to stimulus is_a: GO:1903034 ! regulation of response to wounding intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0009611 ! response to wounding -relationship: negatively_regulates GO:0009611 ! response to wounding +intersection_of: RO:0002212 GO:0009611 ! negatively regulates response to wounding +relationship: RO:0002212 GO:0009611 ! negatively regulates response to wounding created_by: kmv creation_date: 2014-05-18T01:28:52Z @@ -126388,8 +125806,8 @@ synonym: "upregulation of response to wounding" EXACT [GOC:TermGenie] is_a: GO:0048584 ! positive regulation of response to stimulus is_a: GO:1903034 ! regulation of response to wounding intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009611 ! response to wounding -relationship: positively_regulates GO:0009611 ! response to wounding +intersection_of: RO:0002213 GO:0009611 ! positively regulates response to wounding +relationship: RO:0002213 GO:0009611 ! positively regulates response to wounding created_by: kmv creation_date: 2014-05-18T01:28:58Z @@ -126403,8 +125821,8 @@ synonym: "regulation of leukocyte adhesion" EXACT [GOC:TermGenie] synonym: "regulation of leukocyte cell adhesion" EXACT [GOC:TermGenie] is_a: GO:0022407 ! regulation of cell-cell adhesion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007159 ! leukocyte cell-cell adhesion -relationship: regulates GO:0007159 ! leukocyte cell-cell adhesion +intersection_of: RO:0002211 GO:0007159 ! regulates (processual) leukocyte cell-cell adhesion +relationship: RO:0002211 GO:0007159 ! regulates (processual) leukocyte cell-cell adhesion created_by: rl creation_date: 2014-05-19T15:29:58Z @@ -126431,8 +125849,8 @@ synonym: "negative regulation of leukocyte cell adhesion" EXACT [GOC:TermGenie] is_a: GO:0022408 ! negative regulation of cell-cell adhesion is_a: GO:1903037 ! regulation of leukocyte cell-cell adhesion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007159 ! leukocyte cell-cell adhesion -relationship: negatively_regulates GO:0007159 ! leukocyte cell-cell adhesion +intersection_of: RO:0002212 GO:0007159 ! negatively regulates leukocyte cell-cell adhesion +relationship: RO:0002212 GO:0007159 ! negatively regulates leukocyte cell-cell adhesion created_by: rl creation_date: 2014-05-19T15:30:05Z @@ -126459,8 +125877,8 @@ synonym: "upregulation of leukocyte cell-cell adhesion" EXACT [GOC:TermGenie] is_a: GO:0022409 ! positive regulation of cell-cell adhesion is_a: GO:1903037 ! regulation of leukocyte cell-cell adhesion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007159 ! leukocyte cell-cell adhesion -relationship: positively_regulates GO:0007159 ! leukocyte cell-cell adhesion +intersection_of: RO:0002213 GO:0007159 ! positively regulates leukocyte cell-cell adhesion +relationship: RO:0002213 GO:0007159 ! positively regulates leukocyte cell-cell adhesion created_by: rl creation_date: 2014-05-19T15:30:15Z @@ -126473,8 +125891,8 @@ is_a: GO:0001558 ! regulation of cell growth is_a: GO:0048638 ! regulation of developmental growth is_a: GO:0061181 ! regulation of chondrocyte development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003415 ! chondrocyte hypertrophy -relationship: regulates GO:0003415 ! chondrocyte hypertrophy +intersection_of: RO:0002211 GO:0003415 ! regulates (processual) chondrocyte hypertrophy +relationship: RO:0002211 GO:0003415 ! regulates (processual) chondrocyte hypertrophy created_by: mr creation_date: 2014-05-20T21:23:13Z @@ -126492,8 +125910,8 @@ is_a: GO:0048640 ! negative regulation of developmental growth is_a: GO:0061182 ! negative regulation of chondrocyte development is_a: GO:1903041 ! regulation of chondrocyte hypertrophy intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003415 ! chondrocyte hypertrophy -relationship: negatively_regulates GO:0003415 ! chondrocyte hypertrophy +intersection_of: RO:0002212 GO:0003415 ! negatively regulates chondrocyte hypertrophy +relationship: RO:0002212 GO:0003415 ! negatively regulates chondrocyte hypertrophy created_by: mr creation_date: 2014-05-20T21:23:19Z @@ -126511,8 +125929,8 @@ is_a: GO:0048639 ! positive regulation of developmental growth is_a: GO:1902761 ! positive regulation of chondrocyte development is_a: GO:1903041 ! regulation of chondrocyte hypertrophy intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003415 ! chondrocyte hypertrophy -relationship: positively_regulates GO:0003415 ! chondrocyte hypertrophy +intersection_of: RO:0002213 GO:0003415 ! positively regulates chondrocyte hypertrophy +relationship: RO:0002213 GO:0003415 ! positively regulates chondrocyte hypertrophy created_by: mr creation_date: 2014-05-20T21:23:25Z @@ -126573,8 +125991,8 @@ synonym: "regulation of proteolysis during cellular protein catabolism" RELATED synonym: "regulation of proteolysis involved in cellular protein catabolic process" EXACT [] is_a: GO:0030162 ! regulation of proteolysis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051603 ! proteolysis involved in protein catabolic process -relationship: regulates GO:0051603 ! proteolysis involved in protein catabolic process +intersection_of: RO:0002211 GO:0051603 ! regulates (processual) proteolysis involved in protein catabolic process +relationship: RO:0002211 GO:0051603 ! regulates (processual) proteolysis involved in protein catabolic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23112" xsd:anyURI created_by: rl creation_date: 2014-05-22T18:00:45Z @@ -126623,8 +126041,8 @@ synonym: "negative regulation of proteolysis involved in cellular protein catabo is_a: GO:0045861 ! negative regulation of proteolysis is_a: GO:1903050 ! regulation of proteolysis involved in protein catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051603 ! proteolysis involved in protein catabolic process -relationship: negatively_regulates GO:0051603 ! proteolysis involved in protein catabolic process +intersection_of: RO:0002212 GO:0051603 ! negatively regulates proteolysis involved in protein catabolic process +relationship: RO:0002212 GO:0051603 ! negatively regulates proteolysis involved in protein catabolic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23112" xsd:anyURI created_by: rl creation_date: 2014-05-22T18:00:51Z @@ -126673,8 +126091,8 @@ synonym: "upregulation of proteolysis involved in cellular protein catabolic pro is_a: GO:0045862 ! positive regulation of proteolysis is_a: GO:1903050 ! regulation of proteolysis involved in protein catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051603 ! proteolysis involved in protein catabolic process -relationship: positively_regulates GO:0051603 ! proteolysis involved in protein catabolic process +intersection_of: RO:0002213 GO:0051603 ! positively regulates proteolysis involved in protein catabolic process +relationship: RO:0002213 GO:0051603 ! positively regulates proteolysis involved in protein catabolic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23112" xsd:anyURI created_by: rl creation_date: 2014-05-22T18:00:57Z @@ -126688,8 +126106,8 @@ synonym: "regulation of extracellular matrix organisation" EXACT [GOC:TermGenie] synonym: "regulation of extracellular matrix organization and biogenesis" RELATED [GOC:TermGenie] is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030198 ! extracellular matrix organization -relationship: regulates GO:0030198 ! extracellular matrix organization +intersection_of: RO:0002211 GO:0030198 ! regulates (processual) extracellular matrix organization +relationship: RO:0002211 GO:0030198 ! regulates (processual) extracellular matrix organization created_by: rl creation_date: 2014-05-23T17:15:41Z @@ -126715,8 +126133,8 @@ synonym: "negative regulation of extracellular matrix organization and biogenesi is_a: GO:0051129 ! negative regulation of cellular component organization is_a: GO:1903053 ! regulation of extracellular matrix organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030198 ! extracellular matrix organization -relationship: negatively_regulates GO:0030198 ! extracellular matrix organization +intersection_of: RO:0002212 GO:0030198 ! negatively regulates extracellular matrix organization +relationship: RO:0002212 GO:0030198 ! negatively regulates extracellular matrix organization created_by: rl creation_date: 2014-05-23T17:15:47Z @@ -126742,8 +126160,8 @@ synonym: "upregulation of extracellular matrix organization and biogenesis" RELA is_a: GO:0051130 ! positive regulation of cellular component organization is_a: GO:1903053 ! regulation of extracellular matrix organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030198 ! extracellular matrix organization -relationship: positively_regulates GO:0030198 ! extracellular matrix organization +intersection_of: RO:0002213 GO:0030198 ! positively regulates extracellular matrix organization +relationship: RO:0002213 GO:0030198 ! positively regulates extracellular matrix organization created_by: rl creation_date: 2014-05-23T17:15:53Z @@ -126757,8 +126175,8 @@ synonym: "regulation of melanosome organisation" EXACT [GOC:TermGenie] synonym: "regulation of melanosome organization and biogenesis" RELATED [GOC:TermGenie] is_a: GO:0033043 ! regulation of organelle organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032438 ! melanosome organization -relationship: regulates GO:0032438 ! melanosome organization +intersection_of: RO:0002211 GO:0032438 ! regulates (processual) melanosome organization +relationship: RO:0002211 GO:0032438 ! regulates (processual) melanosome organization created_by: rl creation_date: 2014-05-27T13:27:49Z @@ -126785,8 +126203,8 @@ synonym: "negative regulation of melanosome organization and biogenesis" RELATED is_a: GO:0010639 ! negative regulation of organelle organization is_a: GO:1903056 ! regulation of melanosome organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032438 ! melanosome organization -relationship: negatively_regulates GO:0032438 ! melanosome organization +intersection_of: RO:0002212 GO:0032438 ! negatively regulates melanosome organization +relationship: RO:0002212 GO:0032438 ! negatively regulates melanosome organization created_by: rl creation_date: 2014-05-27T13:27:55Z @@ -126813,8 +126231,8 @@ synonym: "upregulation of melanosome organization and biogenesis" RELATED [GOC:T is_a: GO:0010638 ! positive regulation of organelle organization is_a: GO:1903056 ! regulation of melanosome organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032438 ! melanosome organization -relationship: positively_regulates GO:0032438 ! melanosome organization +intersection_of: RO:0002213 GO:0032438 ! positively regulates melanosome organization +relationship: RO:0002213 GO:0032438 ! positively regulates melanosome organization created_by: rl creation_date: 2014-05-27T13:28:01Z @@ -126835,8 +126253,8 @@ synonym: "regulation of protein-plasma membrane targeting" RELATED [GOC:TermGeni is_a: GO:1904375 ! regulation of protein localization to cell periphery is_a: GO:1905475 ! regulation of protein localization to membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072659 ! protein localization to plasma membrane -relationship: regulates GO:0072659 ! protein localization to plasma membrane +intersection_of: RO:0002211 GO:0072659 ! regulates (processual) protein localization to plasma membrane +relationship: RO:0002211 GO:0072659 ! regulates (processual) protein localization to plasma membrane created_by: tb creation_date: 2009-07-10T10:32:44Z @@ -126878,8 +126296,8 @@ is_a: GO:1903076 ! regulation of protein localization to plasma membrane is_a: GO:1904376 ! negative regulation of protein localization to cell periphery is_a: GO:1905476 ! negative regulation of protein localization to membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0072659 ! protein localization to plasma membrane -relationship: negatively_regulates GO:0072659 ! protein localization to plasma membrane +intersection_of: RO:0002212 GO:0072659 ! negatively regulates protein localization to plasma membrane +relationship: RO:0002212 GO:0072659 ! negatively regulates protein localization to plasma membrane created_by: tb creation_date: 2014-05-29T17:10:16Z @@ -126920,8 +126338,8 @@ is_a: GO:1903076 ! regulation of protein localization to plasma membrane is_a: GO:1904377 ! positive regulation of protein localization to cell periphery is_a: GO:1905477 ! positive regulation of protein localization to membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0072659 ! protein localization to plasma membrane -relationship: positively_regulates GO:0072659 ! protein localization to plasma membrane +intersection_of: RO:0002213 GO:0072659 ! positively regulates protein localization to plasma membrane +relationship: RO:0002213 GO:0072659 ! positively regulates protein localization to plasma membrane created_by: tb creation_date: 2009-07-10T10:34:17Z @@ -126932,8 +126350,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of actin filament-based movement." [GO_REF:0000058, GOC:TermGenie, PMID:24798735] is_a: GO:0032970 ! regulation of actin filament-based process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030048 ! actin filament-based movement -relationship: regulates GO:0030048 ! actin filament-based movement +intersection_of: RO:0002211 GO:0030048 ! regulates (processual) actin filament-based movement +relationship: RO:0002211 GO:0030048 ! regulates (processual) actin filament-based movement created_by: al creation_date: 2014-06-12T16:55:57Z @@ -126949,8 +126367,8 @@ synonym: "upregulation of actin filament-based movement" EXACT [GOC:TermGenie] is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:1903115 ! regulation of actin filament-based movement intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030048 ! actin filament-based movement -relationship: positively_regulates GO:0030048 ! actin filament-based movement +intersection_of: RO:0002213 GO:0030048 ! positively regulates actin filament-based movement +relationship: RO:0002213 GO:0030048 ! positively regulates actin filament-based movement created_by: al creation_date: 2014-06-12T16:56:04Z @@ -126964,8 +126382,8 @@ synonym: "protein localisation to actin cytoskeleton" EXACT [GOC:TermGenie] synonym: "protein localization in actin cytoskeleton" EXACT [GOC:TermGenie] is_a: GO:0044380 ! protein localization to cytoskeleton intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0015629 ! actin cytoskeleton -relationship: has_target_end_location GO:0015629 ! actin cytoskeleton +intersection_of: RO:0002339 GO:0015629 ! has target end location actin cytoskeleton +relationship: RO:0002339 GO:0015629 ! has target end location actin cytoskeleton created_by: mah creation_date: 2014-06-16T11:27:09Z @@ -126980,8 +126398,8 @@ synonym: "protein localization in actin filament bundle" EXACT [GOC:TermGenie] synonym: "protein localization to actin cable" RELATED [GOC:mah] is_a: GO:1903119 ! protein localization to actin cytoskeleton intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0032432 ! actin filament bundle -relationship: has_target_end_location GO:0032432 ! actin filament bundle +intersection_of: RO:0002339 GO:0032432 ! has target end location actin filament bundle +relationship: RO:0002339 GO:0032432 ! has target end location actin filament bundle created_by: mah creation_date: 2014-06-16T11:27:16Z @@ -126992,8 +126410,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized features of a mononuclear cell." [CL:0000842, GO_REF:0000086, GOC:TermGenie, PMID:24759906] is_a: GO:0002521 ! leukocyte differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000842 ! mononuclear cell -relationship: results_in_acquisition_of_features_of CL:0000842 ! mononuclear cell +intersection_of: RO:0002315 CL:0000842 ! results in acquisition of features of mononuclear cell +relationship: RO:0002315 CL:0000842 ! results in acquisition of features of mononuclear cell created_by: cls creation_date: 2014-06-25T15:47:09Z @@ -127008,8 +126426,8 @@ synonym: "regulation of transmembrane calcium transport" EXACT [GOC:TermGenie] is_a: GO:0051924 ! regulation of calcium ion transport is_a: GO:1904062 ! regulation of monoatomic cation transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070588 ! calcium ion transmembrane transport -relationship: regulates GO:0070588 ! calcium ion transmembrane transport +intersection_of: RO:0002211 GO:0070588 ! regulates (processual) calcium ion transmembrane transport +relationship: RO:0002211 GO:0070588 ! regulates (processual) calcium ion transmembrane transport created_by: rl creation_date: 2014-07-11T17:09:26Z @@ -127037,8 +126455,8 @@ is_a: GO:0051926 ! negative regulation of calcium ion transport is_a: GO:1903169 ! regulation of calcium ion transmembrane transport is_a: GO:1904063 ! negative regulation of cation transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070588 ! calcium ion transmembrane transport -relationship: negatively_regulates GO:0070588 ! calcium ion transmembrane transport +intersection_of: RO:0002212 GO:0070588 ! negatively regulates calcium ion transmembrane transport +relationship: RO:0002212 GO:0070588 ! negatively regulates calcium ion transmembrane transport created_by: rl creation_date: 2014-07-11T17:09:32Z @@ -127054,8 +126472,8 @@ synonym: "regulation of dopamine synthesis" EXACT [GOC:TermGenie] is_a: GO:0009889 ! regulation of biosynthetic process is_a: GO:0042053 ! regulation of dopamine metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042416 ! dopamine biosynthetic process -relationship: regulates GO:0042416 ! dopamine biosynthetic process +intersection_of: RO:0002211 GO:0042416 ! regulates (processual) dopamine biosynthetic process +relationship: RO:0002211 GO:0042416 ! regulates (processual) dopamine biosynthetic process created_by: bf creation_date: 2014-07-14T12:17:41Z @@ -127092,8 +126510,8 @@ is_a: GO:0009890 ! negative regulation of biosynthetic process is_a: GO:0045963 ! negative regulation of dopamine metabolic process is_a: GO:1903179 ! regulation of dopamine biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042416 ! dopamine biosynthetic process -relationship: negatively_regulates GO:0042416 ! dopamine biosynthetic process +intersection_of: RO:0002212 GO:0042416 ! negatively regulates dopamine biosynthetic process +relationship: RO:0002212 GO:0042416 ! negatively regulates dopamine biosynthetic process created_by: bf creation_date: 2014-07-14T12:17:47Z @@ -127130,8 +126548,8 @@ is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:0045964 ! positive regulation of dopamine metabolic process is_a: GO:1903179 ! regulation of dopamine biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042416 ! dopamine biosynthetic process -relationship: positively_regulates GO:0042416 ! dopamine biosynthetic process +intersection_of: RO:0002213 GO:0042416 ! positively regulates dopamine biosynthetic process +relationship: RO:0002213 GO:0042416 ! positively regulates dopamine biosynthetic process created_by: bf creation_date: 2014-07-14T12:17:53Z @@ -127147,8 +126565,8 @@ synonym: "glomerular visceral epithelial cell apoptotic process" EXACT [] synonym: "podocyte apoptosis" NARROW [GOC:TermGenie] is_a: GO:1904019 ! epithelial cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000653 ! podocyte -relationship: occurs_in CL:0000653 ! podocyte +intersection_of: BFO:0000066 CL:0000653 ! occurs in podocyte +relationship: BFO:0000066 CL:0000653 ! occurs in podocyte property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23000" xsd:anyURI created_by: sl creation_date: 2014-07-23T17:07:55Z @@ -127161,8 +126579,8 @@ def: "Any process that modulates the frequency, rate or extent of endodermal cel synonym: "regulation of endoderm cell differentiation" EXACT [GOC:TermGenie] is_a: GO:0045595 ! regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035987 ! endodermal cell differentiation -relationship: regulates GO:0035987 ! endodermal cell differentiation +intersection_of: RO:0002211 GO:0035987 ! regulates (processual) endodermal cell differentiation +relationship: RO:0002211 GO:0035987 ! regulates (processual) endodermal cell differentiation created_by: als creation_date: 2014-07-29T13:22:35Z @@ -127183,8 +126601,8 @@ synonym: "negative regulation of endoderm cell differentiation" EXACT [GOC:TermG is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:1903224 ! regulation of endodermal cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035987 ! endodermal cell differentiation -relationship: negatively_regulates GO:0035987 ! endodermal cell differentiation +intersection_of: RO:0002212 GO:0035987 ! negatively regulates endodermal cell differentiation +relationship: RO:0002212 GO:0035987 ! negatively regulates endodermal cell differentiation created_by: als creation_date: 2014-07-29T13:22:41Z @@ -127205,8 +126623,8 @@ synonym: "upregulation of endodermal cell differentiation" EXACT [GOC:TermGenie] is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:1903224 ! regulation of endodermal cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035987 ! endodermal cell differentiation -relationship: positively_regulates GO:0035987 ! endodermal cell differentiation +intersection_of: RO:0002213 GO:0035987 ! positively regulates endodermal cell differentiation +relationship: RO:0002213 GO:0035987 ! positively regulates endodermal cell differentiation created_by: als creation_date: 2014-07-29T13:22:47Z @@ -127219,8 +126637,8 @@ synonym: "melanosome formation" EXACT [GOC:TermGenie] is_a: GO:0032438 ! melanosome organization is_a: GO:0070925 ! organelle assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0042470 ! melanosome -relationship: results_in_assembly_of GO:0042470 ! melanosome +intersection_of: RO:0002588 GO:0042470 ! results in assembly of melanosome +relationship: RO:0002588 GO:0042470 ! results in assembly of melanosome created_by: bf creation_date: 2014-07-31T10:41:38Z @@ -127230,10 +126648,10 @@ name: multi-ciliated epithelial cell differentiation namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized features of a multi-ciliated epithelial cell." [GO_REF:0000086, GOC:sp, GOC:TermGenie, PMID:22231168, PMID:24934224] synonym: "multiciliate cell differentiation" BROAD [] -is_a: GO:0030855 ! epithelial cell differentiation +is_a: GO:0002065 ! columnar/cuboidal epithelial cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0005012 ! multi-ciliated epithelial cell -relationship: results_in_acquisition_of_features_of CL:0005012 ! multi-ciliated epithelial cell +intersection_of: RO:0002315 CL:0005012 ! results in acquisition of features of multi-ciliated epithelial cell +relationship: RO:0002315 CL:0005012 ! results in acquisition of features of multi-ciliated epithelial cell created_by: tb creation_date: 2014-08-05T19:21:21Z @@ -127248,8 +126666,8 @@ synonym: "regulation of sodium ion export" RELATED [] synonym: "regulation of sodium ion export from cell" EXACT [] is_a: GO:1902305 ! regulation of sodium ion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0036376 ! sodium ion export across plasma membrane -relationship: regulates GO:0036376 ! sodium ion export across plasma membrane +intersection_of: RO:0002211 GO:0036376 ! regulates (processual) sodium ion export across plasma membrane +relationship: RO:0002211 GO:0036376 ! regulates (processual) sodium ion export across plasma membrane created_by: rl creation_date: 2014-08-08T17:06:46Z @@ -127277,8 +126695,8 @@ synonym: "negative regulation of sodium ion export from cell" EXACT [] is_a: GO:1902306 ! negative regulation of sodium ion transmembrane transport is_a: GO:1903276 ! regulation of sodium ion export across plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0036376 ! sodium ion export across plasma membrane -relationship: negatively_regulates GO:0036376 ! sodium ion export across plasma membrane +intersection_of: RO:0002212 GO:0036376 ! negatively regulates sodium ion export across plasma membrane +relationship: RO:0002212 GO:0036376 ! negatively regulates sodium ion export across plasma membrane created_by: rl creation_date: 2014-08-08T17:10:22Z @@ -127306,11 +126724,81 @@ synonym: "upregulation of sodium ion export from cell" EXACT [GOC:TermGenie] is_a: GO:1902307 ! positive regulation of sodium ion transmembrane transport is_a: GO:1903276 ! regulation of sodium ion export across plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0036376 ! sodium ion export across plasma membrane -relationship: positively_regulates GO:0036376 ! sodium ion export across plasma membrane +intersection_of: RO:0002213 GO:0036376 ! positively regulates sodium ion export across plasma membrane +relationship: RO:0002213 GO:0036376 ! positively regulates sodium ion export across plasma membrane created_by: rl creation_date: 2014-08-08T17:10:30Z +[Term] +id: GO:1903286 +name: regulation of potassium ion import +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of potassium ion import." [GO_REF:0000058, GOC:BHF, GOC:mtg_cardiac_conduct_nov11, GOC:rl, GOC:TermGenie, PMID:10636900] +synonym: "regulation of potassium import" EXACT [GOC:TermGenie] +synonym: "regulation of potassium ion uptake" EXACT [GOC:TermGenie] +is_a: GO:1901379 ! regulation of potassium ion transmembrane transport +intersection_of: GO:0065007 ! biological regulation +intersection_of: RO:0002211 GO:1990573 ! regulates (processual) potassium ion import across plasma membrane +relationship: RO:0002211 GO:1990573 ! regulates (processual) potassium ion import across plasma membrane +created_by: rl +creation_date: 2014-08-11T14:26:16Z + +[Term] +id: GO:1903287 +name: negative regulation of potassium ion import across plasma membrane +namespace: biological_process +def: "Any process that stops, prevents or reduces the frequency, rate or extent of potassium ion import across the plasma membrane." [GO_REF:0000058, GOC:BHF, GOC:mtg_cardiac_conduct_nov11, GOC:rl, GOC:TermGenie, PMID:10636900] +synonym: "down regulation of potassium import" BROAD [GOC:TermGenie] +synonym: "down regulation of potassium ion import" BROAD [GOC:TermGenie] +synonym: "down regulation of potassium ion uptake" BROAD [GOC:TermGenie] +synonym: "down-regulation of potassium import" BROAD [GOC:TermGenie] +synonym: "down-regulation of potassium ion import" BROAD [GOC:TermGenie] +synonym: "down-regulation of potassium ion uptake" BROAD [GOC:TermGenie] +synonym: "downregulation of potassium import" BROAD [GOC:TermGenie] +synonym: "downregulation of potassium ion import" BROAD [GOC:TermGenie] +synonym: "downregulation of potassium ion uptake" BROAD [GOC:TermGenie] +synonym: "inhibition of potassium import" NARROW [GOC:TermGenie] +synonym: "inhibition of potassium ion import" NARROW [GOC:TermGenie] +synonym: "inhibition of potassium ion uptake" NARROW [GOC:TermGenie] +synonym: "negative regulation of potassium import" BROAD [GOC:TermGenie] +synonym: "negative regulation of potassium ion import" BROAD [] +synonym: "negative regulation of potassium ion uptake" BROAD [GOC:TermGenie] +is_a: GO:1901380 ! negative regulation of potassium ion transmembrane transport +is_a: GO:1903286 ! regulation of potassium ion import +intersection_of: GO:0065007 ! biological regulation +intersection_of: RO:0002212 GO:1990573 ! negatively regulates potassium ion import across plasma membrane +relationship: RO:0002212 GO:1990573 ! negatively regulates potassium ion import across plasma membrane +created_by: rl +creation_date: 2014-08-11T14:26:24Z + +[Term] +id: GO:1903288 +name: positive regulation of potassium ion import across plasma membrane +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of potassium ion import across the plasma membrane." [GO_REF:0000058, GOC:BHF, GOC:mtg_cardiac_conduct_nov11, GOC:rl, GOC:TermGenie, PMID:10636900] +synonym: "activation of potassium import" NARROW [GOC:TermGenie] +synonym: "activation of potassium ion import" NARROW [GOC:TermGenie] +synonym: "activation of potassium ion uptake" NARROW [GOC:TermGenie] +synonym: "positive regulation of potassium import" EXACT [GOC:TermGenie] +synonym: "positive regulation of potassium ion import" BROAD [] +synonym: "positive regulation of potassium ion uptake" EXACT [GOC:TermGenie] +synonym: "up regulation of potassium import" EXACT [GOC:TermGenie] +synonym: "up regulation of potassium ion import" EXACT [GOC:TermGenie] +synonym: "up regulation of potassium ion uptake" EXACT [GOC:TermGenie] +synonym: "up-regulation of potassium import" EXACT [GOC:TermGenie] +synonym: "up-regulation of potassium ion import" EXACT [GOC:TermGenie] +synonym: "up-regulation of potassium ion uptake" EXACT [GOC:TermGenie] +synonym: "upregulation of potassium import" EXACT [GOC:TermGenie] +synonym: "upregulation of potassium ion import" EXACT [GOC:TermGenie] +synonym: "upregulation of potassium ion uptake" EXACT [GOC:TermGenie] +is_a: GO:1901381 ! positive regulation of potassium ion transmembrane transport +is_a: GO:1903286 ! regulation of potassium ion import +intersection_of: GO:0065007 ! biological regulation +intersection_of: RO:0002213 GO:1990573 ! positively regulates potassium ion import across plasma membrane +relationship: RO:0002213 GO:1990573 ! positively regulates potassium ion import across plasma membrane +created_by: rl +creation_date: 2014-08-11T14:26:32Z + [Term] id: GO:1903292 name: protein localization to Golgi membrane @@ -127322,8 +126810,8 @@ synonym: "protein localization in Golgi membrane" EXACT [GOC:TermGenie] is_a: GO:0034067 ! protein localization to Golgi apparatus is_a: GO:0072657 ! protein localization to membrane intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0000139 ! Golgi membrane -relationship: has_target_end_location GO:0000139 ! Golgi membrane +intersection_of: RO:0002339 GO:0000139 ! has target end location Golgi membrane +relationship: RO:0002339 GO:0000139 ! has target end location Golgi membrane created_by: mah creation_date: 2014-08-12T14:22:31Z @@ -127337,9 +126825,9 @@ is_a: GO:0014048 ! regulation of glutamate secretion is_a: GO:0046928 ! regulation of neurotransmitter secretion is_a: GO:0051966 ! regulation of synaptic transmission, glutamatergic intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061535 ! glutamate secretion, neurotransmission -relationship: regulates GO:0035249 ! synaptic transmission, glutamatergic -relationship: regulates GO:0061535 ! glutamate secretion, neurotransmission +intersection_of: RO:0002211 GO:0061535 ! regulates (processual) glutamate secretion, neurotransmission +relationship: RO:0002211 GO:0035249 ! regulates (processual) synaptic transmission, glutamatergic +relationship: RO:0002211 GO:0061535 ! regulates (processual) glutamate secretion, neurotransmission created_by: pad creation_date: 2014-08-13T13:54:15Z @@ -127358,9 +126846,9 @@ is_a: GO:0046929 ! negative regulation of neurotransmitter secretion is_a: GO:0051967 ! negative regulation of synaptic transmission, glutamatergic is_a: GO:1903294 ! regulation of glutamate secretion, neurotransmission intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0061535 ! glutamate secretion, neurotransmission -relationship: negatively_regulates GO:0035249 ! synaptic transmission, glutamatergic -relationship: negatively_regulates GO:0061535 ! glutamate secretion, neurotransmission +intersection_of: RO:0002212 GO:0061535 ! negatively regulates glutamate secretion, neurotransmission +relationship: RO:0002212 GO:0035249 ! negatively regulates synaptic transmission, glutamatergic +relationship: RO:0002212 GO:0061535 ! negatively regulates glutamate secretion, neurotransmission created_by: pad creation_date: 2014-08-13T13:54:23Z @@ -127379,9 +126867,9 @@ is_a: GO:0014049 ! positive regulation of glutamate secretion is_a: GO:0051968 ! positive regulation of synaptic transmission, glutamatergic is_a: GO:1903294 ! regulation of glutamate secretion, neurotransmission intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061535 ! glutamate secretion, neurotransmission -relationship: positively_regulates GO:0035249 ! synaptic transmission, glutamatergic -relationship: positively_regulates GO:0061535 ! glutamate secretion, neurotransmission +intersection_of: RO:0002213 GO:0061535 ! positively regulates glutamate secretion, neurotransmission +relationship: RO:0002213 GO:0035249 ! positively regulates synaptic transmission, glutamatergic +relationship: RO:0002213 GO:0061535 ! positively regulates glutamate secretion, neurotransmission created_by: pad creation_date: 2014-08-13T13:54:31Z @@ -127393,8 +126881,8 @@ def: "Any process that modulates the frequency, rate or extent of regulated secr comment: An example of this is protein domain-specific expression of Synaptotagmin 1 in rat (P21707) in PMID:12526776 inferred from mutant phenotype. is_a: GO:0017157 ! regulation of exocytosis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0045055 ! regulated exocytosis -relationship: regulates GO:0045055 ! regulated exocytosis +intersection_of: RO:0002211 GO:0045055 ! regulates (processual) regulated exocytosis +relationship: RO:0002211 GO:0045055 ! regulates (processual) regulated exocytosis created_by: pad creation_date: 2014-08-18T10:04:53Z @@ -127411,8 +126899,8 @@ synonym: "inhibition of regulated secretory pathway" NARROW [GOC:TermGenie] is_a: GO:0045920 ! negative regulation of exocytosis is_a: GO:1903305 ! regulation of regulated secretory pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0045055 ! regulated exocytosis -relationship: negatively_regulates GO:0045055 ! regulated exocytosis +intersection_of: RO:0002212 GO:0045055 ! negatively regulates regulated exocytosis +relationship: RO:0002212 GO:0045055 ! negatively regulates regulated exocytosis created_by: pad creation_date: 2014-08-18T10:05:02Z @@ -127429,8 +126917,8 @@ synonym: "upregulation of regulated secretory pathway" EXACT [GOC:TermGenie] is_a: GO:0045921 ! positive regulation of exocytosis is_a: GO:1903305 ! regulation of regulated secretory pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0045055 ! regulated exocytosis -relationship: positively_regulates GO:0045055 ! regulated exocytosis +intersection_of: RO:0002213 GO:0045055 ! positively regulates regulated exocytosis +relationship: RO:0002213 GO:0045055 ! positively regulates regulated exocytosis created_by: pad creation_date: 2014-08-18T10:05:10Z @@ -127442,9 +126930,9 @@ def: "Any process that modulates the frequency, rate or extent of protein matura is_a: GO:0010468 ! regulation of gene expression is_a: GO:0051246 ! regulation of protein metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051604 ! protein maturation -relationship: regulates GO:0010467 ! gene expression -relationship: regulates GO:0051604 ! protein maturation +intersection_of: RO:0002211 GO:0051604 ! regulates (processual) protein maturation +relationship: RO:0002211 GO:0010467 ! regulates (processual) gene expression +relationship: RO:0002211 GO:0051604 ! regulates (processual) protein maturation created_by: vw creation_date: 2014-08-18T12:59:07Z @@ -127461,9 +126949,9 @@ is_a: GO:0010629 ! negative regulation of gene expression is_a: GO:0051248 ! negative regulation of protein metabolic process is_a: GO:1903317 ! regulation of protein maturation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051604 ! protein maturation -relationship: negatively_regulates GO:0010467 ! gene expression -relationship: negatively_regulates GO:0051604 ! protein maturation +intersection_of: RO:0002212 GO:0051604 ! negatively regulates protein maturation +relationship: RO:0002212 GO:0010467 ! negatively regulates gene expression +relationship: RO:0002212 GO:0051604 ! negatively regulates protein maturation created_by: vw creation_date: 2014-08-18T12:59:15Z @@ -127480,9 +126968,9 @@ is_a: GO:0010628 ! positive regulation of gene expression is_a: GO:0051247 ! positive regulation of protein metabolic process is_a: GO:1903317 ! regulation of protein maturation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051604 ! protein maturation -relationship: positively_regulates GO:0010467 ! gene expression -relationship: positively_regulates GO:0051604 ! protein maturation +intersection_of: RO:0002213 GO:0051604 ! positively regulates protein maturation +relationship: RO:0002213 GO:0010467 ! positively regulates gene expression +relationship: RO:0002213 GO:0051604 ! positively regulates protein maturation created_by: vw creation_date: 2014-08-18T12:59:23Z @@ -127493,8 +126981,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of vacuolar transport." [GO_REF:0000058, GOC:TermGenie, GOC:vw] is_a: GO:0032386 ! regulation of intracellular transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007034 ! vacuolar transport -relationship: regulates GO:0007034 ! vacuolar transport +intersection_of: RO:0002211 GO:0007034 ! regulates (processual) vacuolar transport +relationship: RO:0002211 GO:0007034 ! regulates (processual) vacuolar transport created_by: vw creation_date: 2014-08-18T13:16:04Z @@ -127510,8 +126998,8 @@ synonym: "inhibition of vacuolar transport" NARROW [GOC:TermGenie] is_a: GO:0032387 ! negative regulation of intracellular transport is_a: GO:1903335 ! regulation of vacuolar transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007034 ! vacuolar transport -relationship: negatively_regulates GO:0007034 ! vacuolar transport +intersection_of: RO:0002212 GO:0007034 ! negatively regulates vacuolar transport +relationship: RO:0002212 GO:0007034 ! negatively regulates vacuolar transport created_by: vw creation_date: 2014-08-18T13:16:11Z @@ -127527,8 +127015,8 @@ synonym: "upregulation of vacuolar transport" EXACT [GOC:TermGenie] is_a: GO:0032388 ! positive regulation of intracellular transport is_a: GO:1903335 ! regulation of vacuolar transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007034 ! vacuolar transport -relationship: positively_regulates GO:0007034 ! vacuolar transport +intersection_of: RO:0002213 GO:0007034 ! positively regulates vacuolar transport +relationship: RO:0002213 GO:0007034 ! positively regulates vacuolar transport created_by: vw creation_date: 2014-08-18T13:16:19Z @@ -127549,8 +127037,8 @@ synonym: "negative regulation of tight junction formation" EXACT [GOC:TermGenie] is_a: GO:1901889 ! negative regulation of cell junction assembly is_a: GO:2000810 ! regulation of bicellular tight junction assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0070830 ! bicellular tight junction assembly -relationship: negatively_regulates GO:0070830 ! bicellular tight junction assembly +intersection_of: RO:0002212 GO:0070830 ! negatively regulates bicellular tight junction assembly +relationship: RO:0002212 GO:0070830 ! negatively regulates bicellular tight junction assembly created_by: pr creation_date: 2014-08-19T11:02:14Z @@ -127571,8 +127059,8 @@ synonym: "upregulation of tight junction formation" EXACT [GOC:TermGenie] is_a: GO:1901890 ! positive regulation of cell junction assembly is_a: GO:2000810 ! regulation of bicellular tight junction assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070830 ! bicellular tight junction assembly -relationship: positively_regulates GO:0070830 ! bicellular tight junction assembly +intersection_of: RO:0002213 GO:0070830 ! positively regulates bicellular tight junction assembly +relationship: RO:0002213 GO:0070830 ! positively regulates bicellular tight junction assembly created_by: pr creation_date: 2014-08-19T11:05:06Z @@ -127583,8 +127071,8 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dopamine stimulus." [GO_REF:0000071, GOC:mr, GOC:TermGenie, PMID:11118945] is_a: GO:1901698 ! response to nitrogen compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:59905 ! dopaminium(1+) -relationship: has_primary_input CHEBI:59905 ! dopaminium(1+) +intersection_of: RO:0004009 CHEBI:59905 ! has primary input dopaminium(1+) +relationship: RO:0004009 CHEBI:59905 ! has primary input dopaminium(1+) created_by: mr creation_date: 2014-08-19T19:33:26Z @@ -127596,8 +127084,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:1901699 ! cellular response to nitrogen compound is_a: GO:1903350 ! response to dopamine intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:59905 ! dopaminium(1+) -relationship: has_primary_input CHEBI:59905 ! dopaminium(1+) +intersection_of: RO:0004009 CHEBI:59905 ! has primary input dopaminium(1+) +relationship: RO:0004009 CHEBI:59905 ! has primary input dopaminium(1+) created_by: mr creation_date: 2014-08-19T19:33:35Z @@ -127613,8 +127101,8 @@ synonym: "regulation of nuclear organization and biogenesis" RELATED [GOC:TermGe synonym: "regulation of nucleus organization and biogenesis" RELATED [GOC:TermGenie] is_a: GO:0033043 ! regulation of organelle organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006997 ! nucleus organization -relationship: regulates GO:0006997 ! nucleus organization +intersection_of: RO:0002211 GO:0006997 ! regulates (processual) nucleus organization +relationship: RO:0002211 GO:0006997 ! regulates (processual) nucleus organization created_by: hjd creation_date: 2014-08-20T19:36:16Z @@ -127627,8 +127115,8 @@ synonym: "regulation of Golgi organisation" EXACT [GOC:TermGenie] synonym: "regulation of Golgi organization and biogenesis" RELATED [GOC:TermGenie] is_a: GO:0033043 ! regulation of organelle organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007030 ! Golgi organization -relationship: regulates GO:0007030 ! Golgi organization +intersection_of: RO:0002211 GO:0007030 ! regulates (processual) Golgi organization +relationship: RO:0002211 GO:0007030 ! regulates (processual) Golgi organization created_by: als creation_date: 2014-08-21T10:22:22Z @@ -127644,8 +127132,8 @@ synonym: "facio-acoustic ganglion development" EXACT [GOC:TermGenie] synonym: "facio-acoustic VII-VIII ganglion complex development" EXACT [GOC:TermGenie] is_a: GO:0061550 ! cranial ganglion development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0012175 ! acoustico-facial VII-VIII ganglion complex -relationship: results_in_development_of UBERON:0012175 ! acoustico-facial VII-VIII ganglion complex +intersection_of: RO:0002296 UBERON:0012175 ! results in development of acoustico-facial VII-VIII ganglion complex +relationship: RO:0002296 UBERON:0012175 ! results in development of acoustico-facial VII-VIII ganglion complex created_by: bf creation_date: 2014-08-26T12:40:36Z @@ -127657,8 +127145,8 @@ def: "Any process that modulates the frequency, rate or extent of mitotic chromo is_a: GO:0010564 ! regulation of cell cycle process is_a: GO:0060623 ! regulation of chromosome condensation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007076 ! mitotic chromosome condensation -relationship: regulates GO:0007076 ! mitotic chromosome condensation +intersection_of: RO:0002211 GO:0007076 ! regulates (processual) mitotic chromosome condensation +relationship: RO:0002211 GO:0007076 ! regulates (processual) mitotic chromosome condensation created_by: al creation_date: 2014-08-26T13:57:13Z @@ -127675,8 +127163,8 @@ is_a: GO:0090068 ! positive regulation of cell cycle process is_a: GO:1903379 ! regulation of mitotic chromosome condensation is_a: GO:1905821 ! positive regulation of chromosome condensation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007076 ! mitotic chromosome condensation -relationship: positively_regulates GO:0007076 ! mitotic chromosome condensation +intersection_of: RO:0002213 GO:0007076 ! positively regulates mitotic chromosome condensation +relationship: RO:0002213 GO:0007076 ! positively regulates mitotic chromosome condensation created_by: al creation_date: 2014-08-26T13:57:29Z @@ -127689,8 +127177,8 @@ is_a: GO:0014070 ! response to organic cyclic compound is_a: GO:0033993 ! response to lipid is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:3098 ! bile acid -relationship: has_primary_input CHEBI:3098 ! bile acid +intersection_of: RO:0004009 CHEBI:3098 ! has primary input bile acid +relationship: RO:0004009 CHEBI:3098 ! has primary input bile acid created_by: rl creation_date: 2014-09-03T12:45:43Z @@ -127704,8 +127192,8 @@ is_a: GO:0071407 ! cellular response to organic cyclic compound is_a: GO:1901701 ! cellular response to oxygen-containing compound is_a: GO:1903412 ! response to bile acid intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:3098 ! bile acid -relationship: has_primary_input CHEBI:3098 ! bile acid +intersection_of: RO:0004009 CHEBI:3098 ! has primary input bile acid +relationship: RO:0004009 CHEBI:3098 ! has primary input bile acid created_by: rl creation_date: 2014-09-03T12:45:51Z @@ -127717,8 +127205,8 @@ def: "Any process that modulates the frequency, rate or extent of cell maturatio synonym: "regulation of functional differentiation" RELATED [GOC:TermGenie] is_a: GO:0060284 ! regulation of cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048469 ! cell maturation -relationship: regulates GO:0048469 ! cell maturation +intersection_of: RO:0002211 GO:0048469 ! regulates (processual) cell maturation +relationship: RO:0002211 GO:0048469 ! regulates (processual) cell maturation created_by: jl creation_date: 2014-09-15T13:31:23Z @@ -127739,8 +127227,8 @@ synonym: "negative regulation of functional differentiation" RELATED [GOC:TermGe is_a: GO:0010721 ! negative regulation of cell development is_a: GO:1903429 ! regulation of cell maturation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048469 ! cell maturation -relationship: negatively_regulates GO:0048469 ! cell maturation +intersection_of: RO:0002212 GO:0048469 ! negatively regulates cell maturation +relationship: RO:0002212 GO:0048469 ! negatively regulates cell maturation created_by: jl creation_date: 2014-09-15T13:31:32Z @@ -127761,8 +127249,8 @@ synonym: "upregulation of functional differentiation" RELATED [GOC:TermGenie] is_a: GO:0010720 ! positive regulation of cell development is_a: GO:1903429 ! regulation of cell maturation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048469 ! cell maturation -relationship: positively_regulates GO:0048469 ! cell maturation +intersection_of: RO:0002213 GO:0048469 ! positively regulates cell maturation +relationship: RO:0002213 GO:0048469 ! positively regulates cell maturation created_by: jl creation_date: 2014-09-15T13:31:41Z @@ -127791,8 +127279,8 @@ is_a: GO:0061512 ! protein localization to cilium is_a: GO:0072657 ! protein localization to membrane is_a: GO:1990778 ! protein localization to cell periphery intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0060170 ! ciliary membrane -relationship: has_target_end_location GO:0060170 ! ciliary membrane +intersection_of: RO:0002339 GO:0060170 ! has target end location ciliary membrane +relationship: RO:0002339 GO:0060170 ! has target end location ciliary membrane created_by: pr creation_date: 2014-09-16T15:15:39Z @@ -127818,8 +127306,8 @@ synonym: "negative regulation of brown adipocyte differentiation" EXACT [GOC:Ter is_a: GO:0045599 ! negative regulation of fat cell differentiation is_a: GO:0090335 ! regulation of brown fat cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0050873 ! brown fat cell differentiation -relationship: negatively_regulates GO:0050873 ! brown fat cell differentiation +intersection_of: RO:0002212 GO:0050873 ! negatively regulates brown fat cell differentiation +relationship: RO:0002212 GO:0050873 ! negatively regulates brown fat cell differentiation created_by: hjd creation_date: 2014-09-17T19:15:00Z @@ -127832,8 +127320,8 @@ is_a: GO:0050878 ! regulation of body fluid levels is_a: GO:0051046 ! regulation of secretion is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007595 ! lactation -relationship: regulates GO:0007595 ! lactation +intersection_of: RO:0002211 GO:0007595 ! regulates (processual) lactation +relationship: RO:0002211 GO:0007595 ! regulates (processual) lactation created_by: mr creation_date: 2014-09-24T14:44:13Z @@ -127851,8 +127339,8 @@ is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1903487 ! regulation of lactation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007595 ! lactation -relationship: negatively_regulates GO:0007595 ! lactation +intersection_of: RO:0002212 GO:0007595 ! negatively regulates lactation +relationship: RO:0002212 GO:0007595 ! negatively regulates lactation created_by: mr creation_date: 2014-09-24T14:44:22Z @@ -127870,8 +127358,8 @@ is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1903487 ! regulation of lactation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007595 ! lactation -relationship: positively_regulates GO:0007595 ! lactation +intersection_of: RO:0002213 GO:0007595 ! positively regulates lactation +relationship: RO:0002213 GO:0007595 ! positively regulates lactation created_by: mr creation_date: 2014-09-24T14:44:30Z @@ -127884,8 +127372,8 @@ synonym: "liposaccharide metabolism" EXACT [GOC:TermGenie] is_a: GO:0006629 ! lipid metabolic process is_a: GO:1901135 ! carbohydrate derivative metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:35740 ! liposaccharide -relationship: has_primary_input_or_output CHEBI:35740 ! liposaccharide +intersection_of: RO:0004007 CHEBI:35740 ! has primary input or output liposaccharide +relationship: RO:0004007 CHEBI:35740 ! has primary input or output liposaccharide created_by: dph creation_date: 2014-10-01T21:52:52Z @@ -127897,8 +127385,8 @@ def: "The chemical reactions and pathways involving mucopolysaccharide." [GO_REF synonym: "mucopolysaccharide metabolism" EXACT [GOC:TermGenie] is_a: GO:0030203 ! glycosaminoglycan metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:37395 ! mucopolysaccharide -relationship: has_primary_input_or_output CHEBI:37395 ! mucopolysaccharide +intersection_of: RO:0004007 CHEBI:37395 ! has primary input or output mucopolysaccharide +relationship: RO:0004007 CHEBI:37395 ! has primary input or output mucopolysaccharide created_by: dph creation_date: 2014-10-01T21:55:47Z @@ -127910,8 +127398,8 @@ def: "Any process that modulates the frequency, rate or extent of blood circulat synonym: "regulation of hemolymph circulation" RELATED [GOC:TermGenie] is_a: GO:0044057 ! regulation of system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008015 ! blood circulation -relationship: regulates GO:0008015 ! blood circulation +intersection_of: RO:0002211 GO:0008015 ! regulates (processual) blood circulation +relationship: RO:0002211 GO:0008015 ! regulates (processual) blood circulation created_by: mr creation_date: 2014-10-06T18:38:56Z @@ -127932,8 +127420,8 @@ synonym: "negative regulation of hemolymph circulation" RELATED [GOC:TermGenie] is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1903522 ! regulation of blood circulation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008015 ! blood circulation -relationship: negatively_regulates GO:0008015 ! blood circulation +intersection_of: RO:0002212 GO:0008015 ! negatively regulates blood circulation +relationship: RO:0002212 GO:0008015 ! negatively regulates blood circulation created_by: mr creation_date: 2014-10-06T18:39:05Z @@ -127954,8 +127442,8 @@ synonym: "upregulation of hemolymph circulation" RELATED [GOC:TermGenie] is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1903522 ! regulation of blood circulation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008015 ! blood circulation -relationship: positively_regulates GO:0008015 ! blood circulation +intersection_of: RO:0002213 GO:0008015 ! positively regulates blood circulation +relationship: RO:0002213 GO:0008015 ! positively regulates blood circulation created_by: mr creation_date: 2014-10-06T18:39:13Z @@ -127968,8 +127456,8 @@ synonym: "regulation of cellular secretion" EXACT [GOC:TermGenie] is_a: GO:0050794 ! regulation of cellular process is_a: GO:0051046 ! regulation of secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032940 ! secretion by cell -relationship: regulates GO:0032940 ! secretion by cell +intersection_of: RO:0002211 GO:0032940 ! regulates (processual) secretion by cell +relationship: RO:0002211 GO:0032940 ! regulates (processual) secretion by cell created_by: pm creation_date: 2014-10-08T13:24:59Z @@ -127991,8 +127479,8 @@ is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:0051048 ! negative regulation of secretion is_a: GO:1903530 ! regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032940 ! secretion by cell -relationship: negatively_regulates GO:0032940 ! secretion by cell +intersection_of: RO:0002212 GO:0032940 ! negatively regulates secretion by cell +relationship: RO:0002212 GO:0032940 ! negatively regulates secretion by cell created_by: pm creation_date: 2014-10-08T13:25:08Z @@ -128014,8 +127502,8 @@ is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:0051047 ! positive regulation of secretion is_a: GO:1903530 ! regulation of secretion by cell intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032940 ! secretion by cell -relationship: positively_regulates GO:0032940 ! secretion by cell +intersection_of: RO:0002213 GO:0032940 ! positively regulates secretion by cell +relationship: RO:0002213 GO:0032940 ! positively regulates secretion by cell created_by: pm creation_date: 2014-10-08T13:25:17Z @@ -128041,8 +127529,8 @@ synonym: "regulation of meiosis involved in oocyte maturation" BROAD [GOC:TermGe is_a: GO:0010564 ! regulation of cell cycle process is_a: GO:2000241 ! regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1903537 ! meiotic cell cycle process involved in oocyte maturation -relationship: regulates GO:1903537 ! meiotic cell cycle process involved in oocyte maturation +intersection_of: RO:0002211 GO:1903537 ! regulates (processual) meiotic cell cycle process involved in oocyte maturation +relationship: RO:0002211 GO:1903537 ! regulates (processual) meiotic cell cycle process involved in oocyte maturation created_by: pr creation_date: 2014-10-09T10:52:38Z @@ -128058,8 +127546,8 @@ is_a: GO:0062237 ! protein localization to postsynapse is_a: GO:0072657 ! protein localization to membrane is_a: GO:1990778 ! protein localization to cell periphery intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0045211 ! postsynaptic membrane -relationship: has_target_end_location GO:0045211 ! postsynaptic membrane +intersection_of: RO:0002339 GO:0045211 ! has target end location postsynaptic membrane +relationship: RO:0002339 GO:0045211 ! has target end location postsynaptic membrane created_by: kmv creation_date: 2014-10-10T11:23:53Z @@ -128073,8 +127561,8 @@ synonym: "establishment of protein localisation to postsynaptic membrane" EXACT synonym: "establishment of protein localization in postsynaptic membrane" EXACT [GOC:TermGenie] is_a: GO:0090150 ! establishment of protein localization to membrane intersection_of: GO:0045184 ! establishment of protein localization -intersection_of: has_target_end_location GO:0045211 ! postsynaptic membrane -relationship: has_target_end_location GO:0045211 ! postsynaptic membrane +intersection_of: RO:0002339 GO:0045211 ! has target end location postsynaptic membrane +relationship: RO:0002339 GO:0045211 ! has target end location postsynaptic membrane created_by: kmv creation_date: 2014-10-10T11:24:03Z @@ -128089,8 +127577,8 @@ synonym: "regulation of extracellular vesicular exosome secretion" EXACT [GOC:Te synonym: "regulation of secretion of exosome" EXACT [GOC:TermGenie] is_a: GO:0017157 ! regulation of exocytosis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990182 ! exosomal secretion -relationship: regulates GO:1990182 ! exosomal secretion +intersection_of: RO:0002211 GO:1990182 ! regulates (processual) exosomal secretion +relationship: RO:0002211 GO:1990182 ! regulates (processual) exosomal secretion created_by: pga creation_date: 2014-10-14T11:38:52Z @@ -128126,8 +127614,8 @@ synonym: "negative regulation of secretion of exosome" EXACT [GOC:TermGenie] is_a: GO:0045920 ! negative regulation of exocytosis is_a: GO:1903541 ! regulation of exosomal secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990182 ! exosomal secretion -relationship: negatively_regulates GO:1990182 ! exosomal secretion +intersection_of: RO:0002212 GO:1990182 ! negatively regulates exosomal secretion +relationship: RO:0002212 GO:1990182 ! negatively regulates exosomal secretion created_by: pga creation_date: 2014-10-14T11:39:02Z @@ -128164,9 +127652,9 @@ is_a: GO:0044089 ! positive regulation of cellular component biogenesis is_a: GO:0045921 ! positive regulation of exocytosis is_a: GO:1903541 ! regulation of exosomal secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990182 ! exosomal secretion -relationship: positively_regulates GO:0044085 ! cellular component biogenesis -relationship: positively_regulates GO:1990182 ! exosomal secretion +intersection_of: RO:0002213 GO:1990182 ! positively regulates exosomal secretion +relationship: RO:0002213 GO:0044085 ! positively regulates cellular component biogenesis +relationship: RO:0002213 GO:1990182 ! positively regulates exosomal secretion created_by: pga creation_date: 2014-10-14T11:39:10Z @@ -128177,8 +127665,8 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a butyrate stimulus." [GO_REF:0000071, GOC:mr, GOC:TermGenie, PMID:9734870] is_a: GO:0070542 ! response to fatty acid intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:17968 ! butyrate -relationship: has_primary_input CHEBI:17968 ! butyrate +intersection_of: RO:0004009 CHEBI:17968 ! has primary input butyrate +relationship: RO:0004009 CHEBI:17968 ! has primary input butyrate created_by: mr creation_date: 2014-10-17T13:57:25Z @@ -128190,8 +127678,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:0071398 ! cellular response to fatty acid is_a: GO:1903544 ! response to butyrate intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:17968 ! butyrate -relationship: has_primary_input CHEBI:17968 ! butyrate +intersection_of: RO:0004009 CHEBI:17968 ! has primary input butyrate +relationship: RO:0004009 CHEBI:17968 ! has primary input butyrate created_by: mr creation_date: 2014-10-17T13:57:35Z @@ -128205,8 +127693,8 @@ synonym: "protein localisation to photoreceptor outer segment" EXACT [GOC:TermGe synonym: "protein localization in photoreceptor outer segment" EXACT [GOC:TermGenie] is_a: GO:0097499 ! protein localization to non-motile cilium intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0001750 ! photoreceptor outer segment -relationship: has_target_end_location GO:0001750 ! photoreceptor outer segment +intersection_of: RO:0002339 GO:0001750 ! has target end location photoreceptor outer segment +relationship: RO:0002339 GO:0001750 ! has target end location photoreceptor outer segment created_by: krc creation_date: 2014-10-17T21:14:11Z @@ -128218,8 +127706,8 @@ def: "Any process that modulates the frequency, rate or extent of extracellular synonym: "regulation of extracellular vesicular exosome assembly" EXACT [GOC:vesicles] is_a: GO:1902115 ! regulation of organelle assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0071971 ! extracellular exosome assembly -relationship: regulates GO:0071971 ! extracellular exosome assembly +intersection_of: RO:0002211 GO:0071971 ! regulates (processual) extracellular exosome assembly +relationship: RO:0002211 GO:0071971 ! regulates (processual) extracellular exosome assembly created_by: pga creation_date: 2014-10-20T15:37:25Z @@ -128236,8 +127724,8 @@ synonym: "negative regulation of extracellular vesicular exosome assembly" EXACT is_a: GO:1902116 ! negative regulation of organelle assembly is_a: GO:1903551 ! regulation of extracellular exosome assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0071971 ! extracellular exosome assembly -relationship: negatively_regulates GO:0071971 ! extracellular exosome assembly +intersection_of: RO:0002212 GO:0071971 ! negatively regulates extracellular exosome assembly +relationship: RO:0002212 GO:0071971 ! negatively regulates extracellular exosome assembly created_by: pga creation_date: 2014-10-20T15:37:33Z @@ -128254,8 +127742,8 @@ synonym: "upregulation of extracellular vesicular exosome assembly" EXACT [GOC:T is_a: GO:1902117 ! positive regulation of organelle assembly is_a: GO:1903551 ! regulation of extracellular exosome assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0071971 ! extracellular exosome assembly -relationship: positively_regulates GO:0071971 ! extracellular exosome assembly +intersection_of: RO:0002213 GO:0071971 ! positively regulates extracellular exosome assembly +relationship: RO:0002213 GO:0071971 ! positively regulates extracellular exosome assembly created_by: pga creation_date: 2014-10-20T15:37:42Z @@ -128280,8 +127768,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of protein localization to cilium." [GO_REF:0000058, GOC:cilia, GOC:krc, GOC:TermGenie, PMID:22072986] is_a: GO:0032880 ! regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061512 ! protein localization to cilium -relationship: regulates GO:0061512 ! protein localization to cilium +intersection_of: RO:0002211 GO:0061512 ! regulates (processual) protein localization to cilium +relationship: RO:0002211 GO:0061512 ! regulates (processual) protein localization to cilium created_by: krc creation_date: 2014-10-24T20:58:11Z @@ -128297,8 +127785,8 @@ synonym: "inhibition of protein localization to cilium" NARROW [GOC:TermGenie] is_a: GO:1903564 ! regulation of protein localization to cilium is_a: GO:1903828 ! negative regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0061512 ! protein localization to cilium -relationship: negatively_regulates GO:0061512 ! protein localization to cilium +intersection_of: RO:0002212 GO:0061512 ! negatively regulates protein localization to cilium +relationship: RO:0002212 GO:0061512 ! negatively regulates protein localization to cilium created_by: krc creation_date: 2014-10-24T20:58:20Z @@ -128314,8 +127802,8 @@ synonym: "upregulation of protein localization to cilium" EXACT [GOC:TermGenie] is_a: GO:1903564 ! regulation of protein localization to cilium is_a: GO:1903829 ! positive regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061512 ! protein localization to cilium -relationship: positively_regulates GO:0061512 ! protein localization to cilium +intersection_of: RO:0002213 GO:0061512 ! positively regulates protein localization to cilium +relationship: RO:0002213 GO:0061512 ! positively regulates protein localization to cilium created_by: krc creation_date: 2014-10-24T20:58:28Z @@ -128331,8 +127819,8 @@ is_a: GO:1903564 ! regulation of protein localization to cilium is_a: GO:1904375 ! regulation of protein localization to cell periphery is_a: GO:1905475 ! regulation of protein localization to membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1903441 ! protein localization to ciliary membrane -relationship: regulates GO:1903441 ! protein localization to ciliary membrane +intersection_of: RO:0002211 GO:1903441 ! regulates (processual) protein localization to ciliary membrane +relationship: RO:0002211 GO:1903441 ! regulates (processual) protein localization to ciliary membrane created_by: krc creation_date: 2014-10-24T21:32:51Z @@ -128365,8 +127853,8 @@ is_a: GO:1903567 ! regulation of protein localization to ciliary membrane is_a: GO:1904376 ! negative regulation of protein localization to cell periphery is_a: GO:1905476 ! negative regulation of protein localization to membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1903441 ! protein localization to ciliary membrane -relationship: negatively_regulates GO:1903441 ! protein localization to ciliary membrane +intersection_of: RO:0002212 GO:1903441 ! negatively regulates protein localization to ciliary membrane +relationship: RO:0002212 GO:1903441 ! negatively regulates protein localization to ciliary membrane created_by: krc creation_date: 2014-10-24T21:32:59Z @@ -128399,8 +127887,8 @@ is_a: GO:1903567 ! regulation of protein localization to ciliary membrane is_a: GO:1904377 ! positive regulation of protein localization to cell periphery is_a: GO:1905477 ! positive regulation of protein localization to membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1903441 ! protein localization to ciliary membrane -relationship: positively_regulates GO:1903441 ! protein localization to ciliary membrane +intersection_of: RO:0002213 GO:1903441 ! positively regulates protein localization to ciliary membrane +relationship: RO:0002213 GO:1903441 ! positively regulates protein localization to ciliary membrane created_by: krc creation_date: 2014-10-24T21:33:08Z @@ -128412,8 +127900,8 @@ def: "Any process that modulates the frequency, rate or extent of ATP metabolic synonym: "regulation of ATP metabolism" EXACT [GOC:TermGenie] is_a: GO:0051174 ! regulation of phosphorus metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0046034 ! ATP metabolic process -relationship: regulates GO:0046034 ! ATP metabolic process +intersection_of: RO:0002211 GO:0046034 ! regulates (processual) ATP metabolic process +relationship: RO:0002211 GO:0046034 ! regulates (processual) ATP metabolic process created_by: sl creation_date: 2014-10-30T19:04:24Z @@ -128434,8 +127922,8 @@ synonym: "negative regulation of ATP metabolism" EXACT [GOC:TermGenie] is_a: GO:0010563 ! negative regulation of phosphorus metabolic process is_a: GO:1903578 ! regulation of ATP metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0046034 ! ATP metabolic process -relationship: negatively_regulates GO:0046034 ! ATP metabolic process +intersection_of: RO:0002212 GO:0046034 ! negatively regulates ATP metabolic process +relationship: RO:0002212 GO:0046034 ! negatively regulates ATP metabolic process created_by: sl creation_date: 2014-10-30T19:04:33Z @@ -128456,8 +127944,8 @@ synonym: "upregulation of ATP metabolism" EXACT [GOC:TermGenie] is_a: GO:0010562 ! positive regulation of phosphorus metabolic process is_a: GO:1903578 ! regulation of ATP metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0046034 ! ATP metabolic process -relationship: positively_regulates GO:0046034 ! ATP metabolic process +intersection_of: RO:0002213 GO:0046034 ! positively regulates ATP metabolic process +relationship: RO:0002213 GO:0046034 ! positively regulates ATP metabolic process created_by: sl creation_date: 2014-10-30T19:04:42Z @@ -128472,8 +127960,8 @@ synonym: "regulation of DNA degradation" EXACT [GOC:TermGenie] is_a: GO:0009894 ! regulation of catabolic process is_a: GO:0051052 ! regulation of DNA metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006308 ! DNA catabolic process -relationship: regulates GO:0006308 ! DNA catabolic process +intersection_of: RO:0002211 GO:0006308 ! regulates (processual) DNA catabolic process +relationship: RO:0002211 GO:0006308 ! regulates (processual) DNA catabolic process created_by: sl creation_date: 2014-11-19T22:36:35Z @@ -128505,8 +127993,8 @@ is_a: GO:0009895 ! negative regulation of catabolic process is_a: GO:0051053 ! negative regulation of DNA metabolic process is_a: GO:1903624 ! regulation of DNA catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006308 ! DNA catabolic process -relationship: negatively_regulates GO:0006308 ! DNA catabolic process +intersection_of: RO:0002212 GO:0006308 ! negatively regulates DNA catabolic process +relationship: RO:0002212 GO:0006308 ! negatively regulates DNA catabolic process created_by: sl creation_date: 2014-11-19T22:36:43Z @@ -128538,8 +128026,8 @@ is_a: GO:0009896 ! positive regulation of catabolic process is_a: GO:0051054 ! positive regulation of DNA metabolic process is_a: GO:1903624 ! regulation of DNA catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006308 ! DNA catabolic process -relationship: positively_regulates GO:0006308 ! DNA catabolic process +intersection_of: RO:0002213 GO:0006308 ! positively regulates DNA catabolic process +relationship: RO:0002213 GO:0006308 ! positively regulates DNA catabolic process created_by: sl creation_date: 2014-11-19T22:36:51Z @@ -128552,8 +128040,8 @@ synonym: "sebocyte differentiation" EXACT [CL:0002140] is_a: GO:0001949 ! sebaceous gland cell differentiation is_a: GO:0090425 ! acinar cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0002140 ! acinar cell of sebaceous gland -relationship: results_in_acquisition_of_features_of CL:0002140 ! acinar cell of sebaceous gland +intersection_of: RO:0002315 CL:0002140 ! results in acquisition of features of acinar cell of sebaceous gland +relationship: RO:0002315 CL:0002140 ! results in acquisition of features of acinar cell of sebaceous gland created_by: cls creation_date: 2014-11-30T11:51:57Z @@ -128574,8 +128062,8 @@ synonym: "negative regulation of microvillus biogenesis" RELATED [GOC:TermGenie] is_a: GO:0032534 ! regulation of microvillus assembly is_a: GO:0120033 ! negative regulation of plasma membrane bounded cell projection assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030033 ! microvillus assembly -relationship: negatively_regulates GO:0030033 ! microvillus assembly +intersection_of: RO:0002212 GO:0030033 ! negatively regulates microvillus assembly +relationship: RO:0002212 GO:0030033 ! negatively regulates microvillus assembly created_by: als creation_date: 2014-12-03T11:45:08Z @@ -128596,8 +128084,8 @@ synonym: "upregulation of microvillus biogenesis" RELATED [GOC:TermGenie] is_a: GO:0032534 ! regulation of microvillus assembly is_a: GO:0120034 ! positive regulation of plasma membrane bounded cell projection assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030033 ! microvillus assembly -relationship: positively_regulates GO:0030033 ! microvillus assembly +intersection_of: RO:0002213 GO:0030033 ! positively regulates microvillus assembly +relationship: RO:0002213 GO:0030033 ! positively regulates microvillus assembly created_by: als creation_date: 2014-12-03T11:45:17Z @@ -128612,8 +128100,8 @@ synonym: "Meibomian gland development" EXACT [GOC:TermGenie] synonym: "tarsoconjunctival gland development" RELATED [GOC:TermGenie] is_a: GO:0048733 ! sebaceous gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001818 ! tarsal gland -relationship: results_in_development_of UBERON:0001818 ! tarsal gland +intersection_of: RO:0002296 UBERON:0001818 ! results in development of tarsal gland +relationship: RO:0002296 UBERON:0001818 ! results in development of tarsal gland created_by: cls creation_date: 2014-12-03T11:47:07Z @@ -128632,8 +128120,8 @@ synonym: "intestinum crassum caecum development" EXACT [GOC:TermGenie] synonym: "intestinum crassum cecum development" RELATED [GOC:TermGenie] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001153 ! caecum -relationship: results_in_development_of UBERON:0001153 ! caecum +intersection_of: RO:0002296 UBERON:0001153 ! results in development of caecum +relationship: RO:0002296 UBERON:0001153 ! results in development of caecum created_by: cls creation_date: 2014-12-03T12:05:00Z @@ -128647,8 +128135,8 @@ synonym: "stroma of cornea development" EXACT [GOC:TermGenie] synonym: "substantia propria development" RELATED [GOC:TermGenie] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001777 ! substantia propria of cornea -relationship: results_in_development_of UBERON:0001777 ! substantia propria of cornea +intersection_of: RO:0002296 UBERON:0001777 ! results in development of substantia propria of cornea +relationship: RO:0002296 UBERON:0001777 ! results in development of substantia propria of cornea created_by: cls creation_date: 2014-12-03T13:12:09Z @@ -128662,8 +128150,8 @@ synonym: "gullet development" EXACT [GOC:TermGenie] synonym: "oesophagus development" EXACT [GOC:TermGenie] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001043 ! esophagus -relationship: results_in_development_of UBERON:0001043 ! esophagus +intersection_of: RO:0002296 UBERON:0001043 ! results in development of esophagus +relationship: RO:0002296 UBERON:0001043 ! results in development of esophagus created_by: cls creation_date: 2014-12-03T14:41:30Z @@ -128681,8 +128169,8 @@ is_a: GO:0002682 ! regulation of immune system process is_a: GO:0060284 ! regulation of cell development is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030097 ! hemopoiesis -relationship: regulates GO:0030097 ! hemopoiesis +intersection_of: RO:0002211 GO:0030097 ! regulates (processual) hemopoiesis +relationship: RO:0002211 GO:0030097 ! regulates (processual) hemopoiesis created_by: pad creation_date: 2014-12-04T15:34:13Z @@ -128721,8 +128209,8 @@ is_a: GO:0010721 ! negative regulation of cell development is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1903706 ! regulation of hemopoiesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030097 ! hemopoiesis -relationship: negatively_regulates GO:0030097 ! hemopoiesis +intersection_of: RO:0002212 GO:0030097 ! negatively regulates hemopoiesis +relationship: RO:0002212 GO:0030097 ! negatively regulates hemopoiesis created_by: pad creation_date: 2014-12-04T15:34:21Z @@ -128761,8 +128249,8 @@ is_a: GO:0010720 ! positive regulation of cell development is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1903706 ! regulation of hemopoiesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030097 ! hemopoiesis -relationship: positively_regulates GO:0030097 ! hemopoiesis +intersection_of: RO:0002213 GO:0030097 ! positively regulates hemopoiesis +relationship: RO:0002213 GO:0030097 ! positively regulates hemopoiesis created_by: pad creation_date: 2014-12-04T15:34:30Z @@ -128780,8 +128268,8 @@ synonym: "uterine glands development" EXACT [GOC:TermGenie] synonym: "uterine glands set development" EXACT [GOC:TermGenie] is_a: GO:0048732 ! gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002451 ! endometrial gland -relationship: results_in_development_of UBERON:0002451 ! endometrial gland +intersection_of: RO:0002296 UBERON:0002451 ! results in development of endometrial gland +relationship: RO:0002296 UBERON:0002451 ! results in development of endometrial gland created_by: cls creation_date: 2014-12-04T18:57:21Z @@ -128794,8 +128282,8 @@ synonym: "regulation of phospholipid metabolism" EXACT [GOC:TermGenie] is_a: GO:0019216 ! regulation of lipid metabolic process is_a: GO:0019220 ! regulation of phosphate metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006644 ! phospholipid metabolic process -relationship: regulates GO:0006644 ! phospholipid metabolic process +intersection_of: RO:0002211 GO:0006644 ! regulates (processual) phospholipid metabolic process +relationship: RO:0002211 GO:0006644 ! regulates (processual) phospholipid metabolic process created_by: sl creation_date: 2014-12-09T20:49:27Z @@ -128817,8 +128305,8 @@ is_a: GO:0045833 ! negative regulation of lipid metabolic process is_a: GO:0045936 ! negative regulation of phosphate metabolic process is_a: GO:1903725 ! regulation of phospholipid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006644 ! phospholipid metabolic process -relationship: negatively_regulates GO:0006644 ! phospholipid metabolic process +intersection_of: RO:0002212 GO:0006644 ! negatively regulates phospholipid metabolic process +relationship: RO:0002212 GO:0006644 ! negatively regulates phospholipid metabolic process created_by: sl creation_date: 2014-12-09T20:49:35Z @@ -128840,8 +128328,8 @@ is_a: GO:0045834 ! positive regulation of lipid metabolic process is_a: GO:0045937 ! positive regulation of phosphate metabolic process is_a: GO:1903725 ! regulation of phospholipid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006644 ! phospholipid metabolic process -relationship: positively_regulates GO:0006644 ! phospholipid metabolic process +intersection_of: RO:0002213 GO:0006644 ! positively regulates phospholipid metabolic process +relationship: RO:0002213 GO:0006644 ! positively regulates phospholipid metabolic process created_by: sl creation_date: 2014-12-09T20:49:44Z @@ -128853,8 +128341,8 @@ def: "The process in which a relatively unspecialized cell acquires the speciali synonym: "lutein cell differentiation" EXACT [CL:0000175] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000175 ! luteal cell -relationship: results_in_acquisition_of_features_of CL:0000175 ! luteal cell +intersection_of: RO:0002315 CL:0000175 ! results in acquisition of features of luteal cell +relationship: RO:0002315 CL:0000175 ! results in acquisition of features of luteal cell created_by: cjm creation_date: 2014-12-10T01:36:43Z @@ -128867,11 +128355,83 @@ synonym: "regulation of plasma membrane organisation" EXACT [GOC:TermGenie] synonym: "regulation of plasma membrane organization and biogenesis" RELATED [GOC:TermGenie] is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007009 ! plasma membrane organization -relationship: regulates GO:0007009 ! plasma membrane organization +intersection_of: RO:0002211 GO:0007009 ! regulates (processual) plasma membrane organization +relationship: RO:0002211 GO:0007009 ! regulates (processual) plasma membrane organization created_by: al creation_date: 2014-12-10T18:59:44Z +[Term] +id: GO:1903764 +name: regulation of potassium ion export across plasma membrane +namespace: biological_process +alt_id: GO:1902302 +def: "Any process that modulates the frequency, rate or extent of potassium ion export across the plasma membrane." [GO_REF:0000058, GOC:BHF, GOC:mtg_cardiac_conduct_nov11, GOC:rl, GOC:TermGenie, PMID:19646991] +synonym: "regulation of potassium export" BROAD [GOC:TermGenie] +synonym: "regulation of potassium export across plasma membrane" BROAD [GOC:TermGenie] +synonym: "regulation of potassium ion export" BROAD [] +is_a: GO:1901379 ! regulation of potassium ion transmembrane transport +intersection_of: GO:0065007 ! biological regulation +intersection_of: RO:0002211 GO:0097623 ! regulates (processual) potassium ion export across plasma membrane +relationship: RO:0002211 GO:0097623 ! regulates (processual) potassium ion export across plasma membrane +created_by: rl +creation_date: 2013-07-17T16:39:53Z + +[Term] +id: GO:1903765 +name: negative regulation of potassium ion export across plasma membrane +namespace: biological_process +alt_id: GO:1902303 +def: "Any process that stops, prevents or reduces the frequency, rate or extent of potassium ion export across the plasma membrane." [GO_REF:0000058, GOC:BHF, GOC:mtg_cardiac_conduct_nov11, GOC:rl, GOC:TermGenie, PMID:19646991] +synonym: "down regulation of potassium export" BROAD [GOC:TermGenie] +synonym: "down regulation of potassium ion export" BROAD [GOC:TermGenie] +synonym: "down regulation of potassium ion export across plasma membrane" EXACT [GOC:TermGenie] +synonym: "down-regulation of potassium export" BROAD [GOC:TermGenie] +synonym: "down-regulation of potassium ion export" BROAD [GOC:TermGenie] +synonym: "down-regulation of potassium ion export across plasma membrane" EXACT [GOC:TermGenie] +synonym: "downregulation of potassium export" BROAD [GOC:TermGenie] +synonym: "downregulation of potassium ion export" BROAD [GOC:TermGenie] +synonym: "downregulation of potassium ion export across plasma membrane" EXACT [GOC:TermGenie] +synonym: "inhibition of potassium export" NARROW [GOC:TermGenie] +synonym: "inhibition of potassium ion export" RELATED [GOC:TermGenie] +synonym: "inhibition of potassium ion export across plasma membrane" EXACT [GOC:TermGenie] +synonym: "negative regulation of potassium export" BROAD [GOC:TermGenie] +synonym: "negative regulation of potassium ion export" BROAD [] +is_a: GO:1901380 ! negative regulation of potassium ion transmembrane transport +is_a: GO:1903764 ! regulation of potassium ion export across plasma membrane +intersection_of: GO:0065007 ! biological regulation +intersection_of: RO:0002212 GO:0097623 ! negatively regulates potassium ion export across plasma membrane +relationship: RO:0002212 GO:0097623 ! negatively regulates potassium ion export across plasma membrane +created_by: rl +creation_date: 2013-07-17T16:40:02Z + +[Term] +id: GO:1903766 +name: positive regulation of potassium ion export across plasma membrane +namespace: biological_process +alt_id: GO:1902304 +def: "Any process that activates or increases the frequency, rate or extent of potassium ion export across the plasma membrane." [GO_REF:0000058, GOC:BHF, GOC:mtg_cardiac_conduct_nov11, GOC:rl, GOC:TermGenie, PMID:19646991] +synonym: "activation of potassium export" RELATED [GOC:TermGenie] +synonym: "activation of potassium ion export" RELATED [GOC:TermGenie] +synonym: "activation of potassium ion export across plasma membrane" RELATED [GOC:TermGenie] +synonym: "positive regulation of potassium export" BROAD [GOC:TermGenie] +synonym: "positive regulation of potassium ion export" BROAD [] +synonym: "up regulation of potassium export" BROAD [GOC:TermGenie] +synonym: "up regulation of potassium ion export" BROAD [GOC:TermGenie] +synonym: "up regulation of potassium ion export across plasma membrane" EXACT [GOC:TermGenie] +synonym: "up-regulation of potassium export" BROAD [GOC:TermGenie] +synonym: "up-regulation of potassium ion export" BROAD [GOC:TermGenie] +synonym: "up-regulation of potassium ion export across plasma membrane" EXACT [GOC:TermGenie] +synonym: "upregulation of potassium export" BROAD [GOC:TermGenie] +synonym: "upregulation of potassium ion export" BROAD [GOC:TermGenie] +synonym: "upregulation of potassium ion export across plasma membrane" EXACT [GOC:TermGenie] +is_a: GO:1901381 ! positive regulation of potassium ion transmembrane transport +is_a: GO:1903764 ! regulation of potassium ion export across plasma membrane +intersection_of: GO:0065007 ! biological regulation +intersection_of: RO:0002213 GO:0097623 ! positively regulates potassium ion export across plasma membrane +relationship: RO:0002213 GO:0097623 ! positively regulates potassium ion export across plasma membrane +created_by: rl +creation_date: 2013-07-17T16:40:10Z + [Term] id: GO:1903778 name: protein localization to vacuolar membrane @@ -128883,8 +128443,8 @@ synonym: "protein localization in vacuolar membrane" EXACT [GOC:TermGenie] is_a: GO:0072657 ! protein localization to membrane is_a: GO:0072665 ! protein localization to vacuole intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005774 ! vacuolar membrane -relationship: has_target_end_location GO:0005774 ! vacuolar membrane +intersection_of: RO:0002339 GO:0005774 ! has target end location vacuolar membrane +relationship: RO:0002339 GO:0005774 ! has target end location vacuolar membrane created_by: mah creation_date: 2015-01-07T13:15:54Z @@ -128895,8 +128455,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cardiac conduction." [GO_REF:0000058, GOC:BHF, GOC:mtg_cardiac_conduct_nov11, GOC:rph, GOC:TermGenie, PMID:12967627] is_a: GO:0008016 ! regulation of heart contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061337 ! cardiac conduction -relationship: regulates GO:0061337 ! cardiac conduction +intersection_of: RO:0002211 GO:0061337 ! regulates (processual) cardiac conduction +relationship: RO:0002211 GO:0061337 ! regulates (processual) cardiac conduction created_by: rph creation_date: 2015-01-07T13:20:11Z @@ -128912,8 +128472,8 @@ synonym: "inhibition of cardiac conduction" NARROW [GOC:TermGenie] is_a: GO:0048519 ! negative regulation of biological process is_a: GO:1903779 ! regulation of cardiac conduction intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0061337 ! cardiac conduction -relationship: negatively_regulates GO:0061337 ! cardiac conduction +intersection_of: RO:0002212 GO:0061337 ! negatively regulates cardiac conduction +relationship: RO:0002212 GO:0061337 ! negatively regulates cardiac conduction created_by: rph creation_date: 2015-01-07T13:20:20Z @@ -128929,8 +128489,8 @@ synonym: "upregulation of cardiac conduction" EXACT [GOC:TermGenie] is_a: GO:0048518 ! positive regulation of biological process is_a: GO:1903779 ! regulation of cardiac conduction intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061337 ! cardiac conduction -relationship: positively_regulates GO:0061337 ! cardiac conduction +intersection_of: RO:0002213 GO:0061337 ! positively regulates cardiac conduction +relationship: RO:0002213 GO:0061337 ! positively regulates cardiac conduction created_by: rph creation_date: 2015-01-07T13:20:28Z @@ -128941,8 +128501,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of sodium ion import across the plasma membrane." [GO_REF:0000058, GOC:BHF, GOC:mtg_cardiac_conduct_nov11, GOC:nc, GOC:TermGenie, PMID:19376779] is_a: GO:1902305 ! regulation of sodium ion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0098719 ! sodium ion import across plasma membrane -relationship: regulates GO:0098719 ! sodium ion import across plasma membrane +intersection_of: RO:0002211 GO:0098719 ! regulates (processual) sodium ion import across plasma membrane +relationship: RO:0002211 GO:0098719 ! regulates (processual) sodium ion import across plasma membrane created_by: nc creation_date: 2015-01-07T16:48:43Z @@ -128958,8 +128518,8 @@ synonym: "inhibition of sodium ion import across plasma membrane" NARROW [GOC:Te is_a: GO:1902306 ! negative regulation of sodium ion transmembrane transport is_a: GO:1903782 ! regulation of sodium ion import across plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0098719 ! sodium ion import across plasma membrane -relationship: negatively_regulates GO:0098719 ! sodium ion import across plasma membrane +intersection_of: RO:0002212 GO:0098719 ! negatively regulates sodium ion import across plasma membrane +relationship: RO:0002212 GO:0098719 ! negatively regulates sodium ion import across plasma membrane created_by: nc creation_date: 2015-01-07T16:48:51Z @@ -128975,8 +128535,8 @@ synonym: "upregulation of sodium ion import across plasma membrane" EXACT [GOC:T is_a: GO:1902307 ! positive regulation of sodium ion transmembrane transport is_a: GO:1903782 ! regulation of sodium ion import across plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0098719 ! sodium ion import across plasma membrane -relationship: positively_regulates GO:0098719 ! sodium ion import across plasma membrane +intersection_of: RO:0002213 GO:0098719 ! positively regulates sodium ion import across plasma membrane +relationship: RO:0002213 GO:0098719 ! positively regulates sodium ion import across plasma membrane created_by: nc creation_date: 2015-01-07T16:49:00Z @@ -128989,8 +128549,8 @@ synonym: "regulation of amino acid membrane transport" EXACT [GOC:TermGenie] is_a: GO:0034762 ! regulation of transmembrane transport is_a: GO:0051955 ! regulation of amino acid transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003333 ! amino acid transmembrane transport -relationship: regulates GO:0003333 ! amino acid transmembrane transport +intersection_of: RO:0002211 GO:0003333 ! regulates (processual) amino acid transmembrane transport +relationship: RO:0002211 GO:0003333 ! regulates (processual) amino acid transmembrane transport created_by: al creation_date: 2015-01-08T17:42:18Z @@ -129003,8 +128563,8 @@ synonym: "regulation of inorganic anion membrane transport" EXACT [GOC:TermGenie synonym: "regulation of transmembrane inorganic anion transport" EXACT [GOC:TermGenie] is_a: GO:0034762 ! regulation of transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0098661 ! inorganic anion transmembrane transport -relationship: regulates GO:0098661 ! inorganic anion transmembrane transport +intersection_of: RO:0002211 GO:0098661 ! regulates (processual) inorganic anion transmembrane transport +relationship: RO:0002211 GO:0098661 ! regulates (processual) inorganic anion transmembrane transport created_by: sl creation_date: 2015-01-14T21:44:49Z @@ -129030,8 +128590,8 @@ synonym: "negative regulation of transmembrane inorganic anion transport" EXACT is_a: GO:0034763 ! negative regulation of transmembrane transport is_a: GO:1903795 ! regulation of inorganic anion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0098661 ! inorganic anion transmembrane transport -relationship: negatively_regulates GO:0098661 ! inorganic anion transmembrane transport +intersection_of: RO:0002212 GO:0098661 ! negatively regulates inorganic anion transmembrane transport +relationship: RO:0002212 GO:0098661 ! negatively regulates inorganic anion transmembrane transport created_by: sl creation_date: 2015-01-14T21:44:59Z @@ -129057,8 +128617,8 @@ synonym: "upregulation of transmembrane inorganic anion transport" EXACT [GOC:Te is_a: GO:0034764 ! positive regulation of transmembrane transport is_a: GO:1903795 ! regulation of inorganic anion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0098661 ! inorganic anion transmembrane transport -relationship: positively_regulates GO:0098661 ! inorganic anion transmembrane transport +intersection_of: RO:0002213 GO:0098661 ! positively regulates inorganic anion transmembrane transport +relationship: RO:0002213 GO:0098661 ! positively regulates inorganic anion transmembrane transport created_by: sl creation_date: 2015-01-14T21:45:08Z @@ -129074,14 +128634,14 @@ synonym: "L-tyrosine uptake" EXACT [GOC:bf] is_a: GO:0015828 ! tyrosine transport is_a: GO:0089718 ! amino acid import across plasma membrane intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:58315 ! L-tyrosine zwitterion -intersection_of: has_target_end_location GO:0005829 ! cytosol -intersection_of: has_target_start_location GO:0005576 ! extracellular region -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:58315 ! L-tyrosine zwitterion -relationship: has_target_end_location GO:0005829 ! cytosol -relationship: has_target_start_location GO:0005576 ! extracellular region -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:58315 ! has primary input L-tyrosine zwitterion +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:58315 ! has primary input L-tyrosine zwitterion created_by: bf creation_date: 2012-05-11T10:46:21Z @@ -129093,10 +128653,10 @@ def: "The process in which an organic acid is transported across a membrane." [G is_a: GO:0015849 ! organic acid transport is_a: GO:0055085 ! transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:64709 ! organic acid -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:64709 ! organic acid -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:64709 ! has primary input organic acid +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:64709 ! has primary input organic acid created_by: vw creation_date: 2015-01-20T10:20:58Z @@ -129118,8 +128678,8 @@ synonym: "negative regulation of cellular protein localization" EXACT [] is_a: GO:0032880 ! regulation of protein localization is_a: GO:0048523 ! negative regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008104 ! protein localization -relationship: negatively_regulates GO:0008104 ! protein localization +intersection_of: RO:0002212 GO:0008104 ! negatively regulates protein localization +relationship: RO:0002212 GO:0008104 ! negatively regulates protein localization property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22021" xsd:anyURI created_by: jl creation_date: 2015-01-20T14:32:24Z @@ -129140,8 +128700,8 @@ synonym: "upregulation of cellular protein localization" EXACT [GOC:TermGenie] is_a: GO:0032880 ! regulation of protein localization is_a: GO:0048522 ! positive regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008104 ! protein localization -relationship: positively_regulates GO:0008104 ! protein localization +intersection_of: RO:0002213 GO:0008104 ! positively regulates protein localization +relationship: RO:0002213 GO:0008104 ! positively regulates protein localization property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22021" xsd:anyURI created_by: jl creation_date: 2015-01-20T14:32:33Z @@ -129169,8 +128729,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of aorta morphogenesis." [GO_REF:0000058, GOC:BHF, GOC:BHF_miRNA, GOC:rph, GOC:TermGenie, PMID:22269326] is_a: GO:1905651 ! regulation of artery morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035909 ! aorta morphogenesis -relationship: regulates GO:0035909 ! aorta morphogenesis +intersection_of: RO:0002211 GO:0035909 ! regulates (processual) aorta morphogenesis +relationship: RO:0002211 GO:0035909 ! regulates (processual) aorta morphogenesis created_by: rph creation_date: 2015-01-23T14:00:51Z @@ -129186,8 +128746,8 @@ synonym: "inhibition of aorta morphogenesis" NARROW [GOC:TermGenie] is_a: GO:1903847 ! regulation of aorta morphogenesis is_a: GO:1905652 ! negative regulation of artery morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035909 ! aorta morphogenesis -relationship: negatively_regulates GO:0035909 ! aorta morphogenesis +intersection_of: RO:0002212 GO:0035909 ! negatively regulates aorta morphogenesis +relationship: RO:0002212 GO:0035909 ! negatively regulates aorta morphogenesis created_by: rph creation_date: 2015-01-23T14:01:01Z @@ -129203,8 +128763,8 @@ synonym: "upregulation of aorta morphogenesis" EXACT [GOC:TermGenie] is_a: GO:1903847 ! regulation of aorta morphogenesis is_a: GO:1905653 ! positive regulation of artery morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035909 ! aorta morphogenesis -relationship: positively_regulates GO:0035909 ! aorta morphogenesis +intersection_of: RO:0002213 GO:0035909 ! positively regulates aorta morphogenesis +relationship: RO:0002213 GO:0035909 ! positively regulates aorta morphogenesis created_by: rph creation_date: 2015-01-23T14:01:09Z @@ -129215,8 +128775,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of an extraembryonic membrane over time, from its formation to the mature structure." [GO_REF:0000094, GOC:TermGenie, ISBN:0073040584] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005631 ! extraembryonic membrane -relationship: results_in_development_of UBERON:0005631 ! extraembryonic membrane +intersection_of: RO:0002296 UBERON:0005631 ! results in development of extraembryonic membrane +relationship: RO:0002296 UBERON:0005631 ! results in development of extraembryonic membrane created_by: cjm creation_date: 2015-02-05T00:42:16Z @@ -129233,8 +128793,8 @@ synonym: "regulation of T lymphocyte polarization" EXACT [GOC:TermGenie] synonym: "regulation of T-cell polarization" EXACT [GOC:TermGenie] is_a: GO:2000114 ! regulation of establishment of cell polarity intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001768 ! establishment of T cell polarity -relationship: regulates GO:0001768 ! establishment of T cell polarity +intersection_of: RO:0002211 GO:0001768 ! regulates (processual) establishment of T cell polarity +relationship: RO:0002211 GO:0001768 ! regulates (processual) establishment of T cell polarity created_by: als creation_date: 2015-02-09T10:50:21Z @@ -129280,9 +128840,9 @@ synonym: "negative regulation of T-cell polarization" EXACT [GOC:TermGenie] is_a: GO:0050868 ! negative regulation of T cell activation is_a: GO:1903903 ! regulation of establishment of T cell polarity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001768 ! establishment of T cell polarity -relationship: negatively_regulates GO:0001768 ! establishment of T cell polarity -relationship: negatively_regulates GO:0042110 ! T cell activation +intersection_of: RO:0002212 GO:0001768 ! negatively regulates establishment of T cell polarity +relationship: RO:0002212 GO:0001768 ! negatively regulates establishment of T cell polarity +relationship: RO:0002212 GO:0042110 ! negatively regulates T cell activation created_by: als creation_date: 2015-02-09T10:50:30Z @@ -129328,9 +128888,9 @@ synonym: "upregulation of T-cell polarization" EXACT [GOC:TermGenie] is_a: GO:0050870 ! positive regulation of T cell activation is_a: GO:1903903 ! regulation of establishment of T cell polarity intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001768 ! establishment of T cell polarity -relationship: positively_regulates GO:0001768 ! establishment of T cell polarity -relationship: positively_regulates GO:0042110 ! T cell activation +intersection_of: RO:0002213 GO:0001768 ! positively regulates establishment of T cell polarity +relationship: RO:0002213 GO:0001768 ! positively regulates establishment of T cell polarity +relationship: RO:0002213 GO:0042110 ! positively regulates T cell activation created_by: als creation_date: 2015-02-09T10:50:40Z @@ -129345,8 +128905,8 @@ synonym: "primitive palate development" RELATED [GOC:TermGenie] synonym: "processus palatinus medianus development" RELATED [GOC:TermGenie] is_a: GO:0060021 ! roof of mouth development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005620 ! primary palate -relationship: results_in_development_of UBERON:0005620 ! primary palate +intersection_of: RO:0002296 UBERON:0005620 ! results in development of primary palate +relationship: RO:0002296 UBERON:0005620 ! results in development of primary palate created_by: cls creation_date: 2015-02-11T22:42:38Z @@ -129362,8 +128922,8 @@ synonym: "inhibition of respiratory gaseous exchange" NARROW [GOC:TermGenie] is_a: GO:0043576 ! regulation of respiratory gaseous exchange is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007585 ! respiratory gaseous exchange by respiratory system -relationship: negatively_regulates GO:0007585 ! respiratory gaseous exchange by respiratory system +intersection_of: RO:0002212 GO:0007585 ! negatively regulates respiratory gaseous exchange by respiratory system +relationship: RO:0002212 GO:0007585 ! negatively regulates respiratory gaseous exchange by respiratory system created_by: sl creation_date: 2015-02-17T20:26:24Z @@ -129379,8 +128939,8 @@ synonym: "upregulation of respiratory gaseous exchange" EXACT [GOC:TermGenie] is_a: GO:0043576 ! regulation of respiratory gaseous exchange is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007585 ! respiratory gaseous exchange by respiratory system -relationship: positively_regulates GO:0007585 ! respiratory gaseous exchange by respiratory system +intersection_of: RO:0002213 GO:0007585 ! positively regulates respiratory gaseous exchange by respiratory system +relationship: RO:0002213 GO:0007585 ! positively regulates respiratory gaseous exchange by respiratory system created_by: sl creation_date: 2015-02-17T20:26:35Z @@ -129392,8 +128952,8 @@ def: "Any process that modulates the frequency, rate or extent of hepatocyte apo synonym: "regulation of hepatocyte apoptosis" NARROW [GOC:TermGenie] is_a: GO:1904035 ! regulation of epithelial cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0097284 ! hepatocyte apoptotic process -relationship: regulates GO:0097284 ! hepatocyte apoptotic process +intersection_of: RO:0002211 GO:0097284 ! regulates (processual) hepatocyte apoptotic process +relationship: RO:0002211 GO:0097284 ! regulates (processual) hepatocyte apoptotic process created_by: sl creation_date: 2015-02-19T12:54:40Z @@ -129414,8 +128974,8 @@ synonym: "negative regulation of hepatocyte apoptosis" NARROW [GOC:TermGenie] is_a: GO:1903943 ! regulation of hepatocyte apoptotic process is_a: GO:1904036 ! negative regulation of epithelial cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0097284 ! hepatocyte apoptotic process -relationship: negatively_regulates GO:0097284 ! hepatocyte apoptotic process +intersection_of: RO:0002212 GO:0097284 ! negatively regulates hepatocyte apoptotic process +relationship: RO:0002212 GO:0097284 ! negatively regulates hepatocyte apoptotic process created_by: sl creation_date: 2015-02-19T12:54:50Z @@ -129436,8 +128996,8 @@ synonym: "upregulation of hepatocyte apoptotic process" EXACT [GOC:TermGenie] is_a: GO:1903943 ! regulation of hepatocyte apoptotic process is_a: GO:1904037 ! positive regulation of epithelial cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0097284 ! hepatocyte apoptotic process -relationship: positively_regulates GO:0097284 ! hepatocyte apoptotic process +intersection_of: RO:0002213 GO:0097284 ! positively regulates hepatocyte apoptotic process +relationship: RO:0002213 GO:0097284 ! positively regulates hepatocyte apoptotic process created_by: sl creation_date: 2015-02-19T12:54:59Z @@ -129463,8 +129023,8 @@ synonym: "negative regulation of AV node cardiac muscle cell action potential" E is_a: GO:0045759 ! negative regulation of action potential is_a: GO:0098904 ! regulation of AV node cell action potential intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0086016 ! AV node cell action potential -relationship: negatively_regulates GO:0086016 ! AV node cell action potential +intersection_of: RO:0002212 GO:0086016 ! negatively regulates AV node cell action potential +relationship: RO:0002212 GO:0086016 ! negatively regulates AV node cell action potential created_by: nc creation_date: 2015-02-20T14:59:41Z @@ -129490,8 +129050,8 @@ synonym: "upregulation of AV node cell action potential" EXACT [GOC:TermGenie] is_a: GO:0045760 ! positive regulation of action potential is_a: GO:0098904 ! regulation of AV node cell action potential intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0086016 ! AV node cell action potential -relationship: positively_regulates GO:0086016 ! AV node cell action potential +intersection_of: RO:0002213 GO:0086016 ! positively regulates AV node cell action potential +relationship: RO:0002213 GO:0086016 ! positively regulates AV node cell action potential created_by: nc creation_date: 2015-02-20T14:59:50Z @@ -129503,8 +129063,8 @@ def: "Any process that modulates the frequency, rate or extent of glial cell mig synonym: "regulation of glia cell migration" EXACT [GOC:TermGenie] is_a: GO:0030334 ! regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008347 ! glial cell migration -relationship: regulates GO:0008347 ! glial cell migration +intersection_of: RO:0002211 GO:0008347 ! regulates (processual) glial cell migration +relationship: RO:0002211 GO:0008347 ! regulates (processual) glial cell migration created_by: nc creation_date: 2015-03-02T15:13:31Z @@ -129525,8 +129085,8 @@ synonym: "negative regulation of glia cell migration" EXACT [GOC:TermGenie] is_a: GO:0030336 ! negative regulation of cell migration is_a: GO:1903975 ! regulation of glial cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008347 ! glial cell migration -relationship: negatively_regulates GO:0008347 ! glial cell migration +intersection_of: RO:0002212 GO:0008347 ! negatively regulates glial cell migration +relationship: RO:0002212 GO:0008347 ! negatively regulates glial cell migration created_by: nc creation_date: 2015-03-02T15:13:38Z @@ -129547,8 +129107,8 @@ synonym: "upregulation of glial cell migration" EXACT [GOC:TermGenie] is_a: GO:0030335 ! positive regulation of cell migration is_a: GO:1903975 ! regulation of glial cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008347 ! glial cell migration -relationship: positively_regulates GO:0008347 ! glial cell migration +intersection_of: RO:0002213 GO:0008347 ! positively regulates glial cell migration +relationship: RO:0002213 GO:0008347 ! positively regulates glial cell migration created_by: nc creation_date: 2015-03-02T15:13:43Z @@ -129566,14 +129126,14 @@ synonym: "iron(2+) export" RELATED [] is_a: GO:0034755 ! iron ion transmembrane transport is_a: GO:0140115 ! export across plasma membrane intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:24875 ! iron cation -intersection_of: has_target_end_location GO:0005576 ! extracellular region -intersection_of: has_target_start_location GO:0005829 ! cytosol -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:24875 ! iron cation -relationship: has_target_end_location GO:0005576 ! extracellular region -relationship: has_target_start_location GO:0005829 ! cytosol -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005829 ! has target start location cytosol +intersection_of: RO:0002339 GO:0005576 ! has target end location extracellular region +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:24875 ! has primary input iron cation +relationship: RO:0002338 GO:0005829 ! has target start location cytosol +relationship: RO:0002339 GO:0005576 ! has target end location extracellular region +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:24875 ! has primary input iron cation created_by: rl creation_date: 2014-09-03T13:01:37Z @@ -129585,8 +129145,8 @@ def: "Any process that modulates the frequency, rate or extent of sebum secretin synonym: "regulation of sebocyte proliferation" RELATED [GOC:TermGenie] is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990654 ! sebum secreting cell proliferation -relationship: regulates GO:1990654 ! sebum secreting cell proliferation +intersection_of: RO:0002211 GO:1990654 ! regulates (processual) sebum secreting cell proliferation +relationship: RO:0002211 GO:1990654 ! regulates (processual) sebum secreting cell proliferation created_by: hjd creation_date: 2015-03-06T16:19:44Z @@ -129607,8 +129167,8 @@ synonym: "negative regulation of sebocyte proliferation" RELATED [GOC:TermGenie] is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:1904002 ! regulation of sebum secreting cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990654 ! sebum secreting cell proliferation -relationship: negatively_regulates GO:1990654 ! sebum secreting cell proliferation +intersection_of: RO:0002212 GO:1990654 ! negatively regulates sebum secreting cell proliferation +relationship: RO:0002212 GO:1990654 ! negatively regulates sebum secreting cell proliferation created_by: hjd creation_date: 2015-03-06T16:19:50Z @@ -129629,8 +129189,8 @@ synonym: "upregulation of sebum secreting cell proliferation" EXACT [GOC:TermGen is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:1904002 ! regulation of sebum secreting cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990654 ! sebum secreting cell proliferation -relationship: positively_regulates GO:1990654 ! sebum secreting cell proliferation +intersection_of: RO:0002213 GO:1990654 ! positively regulates sebum secreting cell proliferation +relationship: RO:0002213 GO:1990654 ! positively regulates sebum secreting cell proliferation created_by: hjd creation_date: 2015-03-06T16:19:56Z @@ -129641,8 +129201,8 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a serotonin stimulus." [GO_REF:0000071, GOC:TermGenie, PMID:1505525] is_a: GO:1901698 ! response to nitrogen compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:350546 ! serotonin(1+) -relationship: has_primary_input CHEBI:350546 ! serotonin(1+) +intersection_of: RO:0004009 CHEBI:350546 ! has primary input serotonin(1+) +relationship: RO:0004009 CHEBI:350546 ! has primary input serotonin(1+) created_by: sl creation_date: 2015-03-06T19:33:54Z @@ -129654,8 +129214,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:1901699 ! cellular response to nitrogen compound is_a: GO:1904014 ! response to serotonin intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:350546 ! serotonin(1+) -relationship: has_primary_input CHEBI:350546 ! serotonin(1+) +intersection_of: RO:0004009 CHEBI:350546 ! has primary input serotonin(1+) +relationship: RO:0004009 CHEBI:350546 ! has primary input serotonin(1+) created_by: sl creation_date: 2015-03-06T19:34:00Z @@ -129677,8 +129237,8 @@ is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1901342 ! regulation of vasculature development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001944 ! vasculature development -relationship: positively_regulates GO:0001944 ! vasculature development +intersection_of: RO:0002213 GO:0001944 ! positively regulates vasculature development +relationship: RO:0002213 GO:0001944 ! positively regulates vasculature development created_by: sl creation_date: 2015-03-06T22:17:04Z @@ -129692,10 +129252,12 @@ synonym: "epitheliocyte apoptosis" NARROW [GOC:TermGenie] synonym: "epitheliocyte apoptotic process" EXACT [GOC:TermGenie] is_a: GO:0006915 ! apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000066 ! epithelial cell +intersection_of: BFO:0000066 CL:0000066 ! occurs in epithelial cell +relationship: BFO:0000066 CL:0000066 ! occurs in epithelial cell +relationship: never_in_taxon NCBITaxon:2 ! Bacteria +relationship: never_in_taxon NCBITaxon:2157 ! Archaea relationship: never_in_taxon NCBITaxon:33090 ! Viridiplantae -relationship: never_in_taxon NCBITaxon_Union:0000023 -relationship: occurs_in CL:0000066 ! epithelial cell +relationship: never_in_taxon NCBITaxon:4751 ! Fungi created_by: sl creation_date: 2015-03-06T22:27:17Z @@ -129710,8 +129272,8 @@ synonym: "regulation of fibrillar collagen organization" EXACT [GOC:TermGenie] is_a: GO:1902903 ! regulation of supramolecular fiber organization is_a: GO:1903053 ! regulation of extracellular matrix organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030199 ! collagen fibril organization -relationship: regulates GO:0030199 ! collagen fibril organization +intersection_of: RO:0002211 GO:0030199 ! regulates (processual) collagen fibril organization +relationship: RO:0002211 GO:0030199 ! regulates (processual) collagen fibril organization created_by: ae creation_date: 2015-03-12T12:36:52Z @@ -129738,8 +129300,8 @@ is_a: GO:1902904 ! negative regulation of supramolecular fiber organization is_a: GO:1903054 ! negative regulation of extracellular matrix organization is_a: GO:1904026 ! regulation of collagen fibril organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030199 ! collagen fibril organization -relationship: negatively_regulates GO:0030199 ! collagen fibril organization +intersection_of: RO:0002212 GO:0030199 ! negatively regulates collagen fibril organization +relationship: RO:0002212 GO:0030199 ! negatively regulates collagen fibril organization created_by: ae creation_date: 2015-03-12T12:36:59Z @@ -129766,8 +129328,8 @@ is_a: GO:1902905 ! positive regulation of supramolecular fiber organization is_a: GO:1903055 ! positive regulation of extracellular matrix organization is_a: GO:1904026 ! regulation of collagen fibril organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030199 ! collagen fibril organization -relationship: positively_regulates GO:0030199 ! collagen fibril organization +intersection_of: RO:0002213 GO:0030199 ! positively regulates collagen fibril organization +relationship: RO:0002213 GO:0030199 ! positively regulates collagen fibril organization created_by: ae creation_date: 2015-03-12T12:37:06Z @@ -129781,8 +129343,8 @@ synonym: "regulation of epitheliocyte apoptosis" NARROW [GOC:TermGenie] synonym: "regulation of epitheliocyte apoptotic process" EXACT [GOC:TermGenie] is_a: GO:0042981 ! regulation of apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1904019 ! epithelial cell apoptotic process -relationship: regulates GO:1904019 ! epithelial cell apoptotic process +intersection_of: RO:0002211 GO:1904019 ! regulates (processual) epithelial cell apoptotic process +relationship: RO:0002211 GO:1904019 ! regulates (processual) epithelial cell apoptotic process created_by: sl creation_date: 2015-03-13T22:05:41Z @@ -129813,8 +129375,8 @@ synonym: "negative regulation of epitheliocyte apoptotic process" EXACT [GOC:Ter is_a: GO:0043066 ! negative regulation of apoptotic process is_a: GO:1904035 ! regulation of epithelial cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1904019 ! epithelial cell apoptotic process -relationship: negatively_regulates GO:1904019 ! epithelial cell apoptotic process +intersection_of: RO:0002212 GO:1904019 ! negatively regulates epithelial cell apoptotic process +relationship: RO:0002212 GO:1904019 ! negatively regulates epithelial cell apoptotic process created_by: sl creation_date: 2015-03-13T22:05:47Z @@ -129845,8 +129407,8 @@ synonym: "upregulation of epitheliocyte apoptotic process" EXACT [GOC:TermGenie] is_a: GO:0043065 ! positive regulation of apoptotic process is_a: GO:1904035 ! regulation of epithelial cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1904019 ! epithelial cell apoptotic process -relationship: positively_regulates GO:1904019 ! epithelial cell apoptotic process +intersection_of: RO:0002213 GO:1904019 ! positively regulates epithelial cell apoptotic process +relationship: RO:0002213 GO:1904019 ! positively regulates epithelial cell apoptotic process created_by: sl creation_date: 2015-03-13T22:05:53Z @@ -129859,8 +129421,8 @@ synonym: "regulation of ferrous iron export" NARROW [] synonym: "regulation of iron(2+) export" NARROW [] is_a: GO:0034759 ! regulation of iron ion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1903988 ! iron ion export across plasma membrane -relationship: regulates GO:1903988 ! iron ion export across plasma membrane +intersection_of: RO:0002211 GO:1903988 ! regulates (processual) iron ion export across plasma membrane +relationship: RO:0002211 GO:1903988 ! regulates (processual) iron ion export across plasma membrane created_by: kom creation_date: 2015-03-16T15:36:37Z @@ -129882,8 +129444,8 @@ synonym: "negative regulation of iron(2+) export" NARROW [] is_a: GO:0034760 ! negative regulation of iron ion transmembrane transport is_a: GO:1904038 ! regulation of iron export across plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1903988 ! iron ion export across plasma membrane -relationship: negatively_regulates GO:1903988 ! iron ion export across plasma membrane +intersection_of: RO:0002212 GO:1903988 ! negatively regulates iron ion export across plasma membrane +relationship: RO:0002212 GO:1903988 ! negatively regulates iron ion export across plasma membrane created_by: kom creation_date: 2015-03-16T15:36:43Z @@ -129905,8 +129467,8 @@ synonym: "upregulation of iron(2+) export" NARROW [GOC:TermGenie] is_a: GO:0034761 ! positive regulation of iron ion transmembrane transport is_a: GO:1904038 ! regulation of iron export across plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1903988 ! iron ion export across plasma membrane -relationship: positively_regulates GO:1903988 ! iron ion export across plasma membrane +intersection_of: RO:0002213 GO:1903988 ! positively regulates iron ion export across plasma membrane +relationship: RO:0002213 GO:1903988 ! positively regulates iron ion export across plasma membrane created_by: kom creation_date: 2015-03-16T15:36:49Z @@ -129919,8 +129481,8 @@ is_a: GO:0051385 ! response to mineralocorticoid is_a: GO:0097305 ! response to alcohol is_a: GO:1901654 ! response to ketone intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:27584 ! aldosterone -relationship: has_primary_input CHEBI:27584 ! aldosterone +intersection_of: RO:0004009 CHEBI:27584 ! has primary input aldosterone +relationship: RO:0004009 CHEBI:27584 ! has primary input aldosterone created_by: sl creation_date: 2015-03-16T23:07:53Z @@ -129935,8 +129497,8 @@ is_a: GO:0110096 ! cellular response to aldehyde is_a: GO:1901655 ! cellular response to ketone is_a: GO:1904044 ! response to aldosterone intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:27584 ! aldosterone -relationship: has_primary_input CHEBI:27584 ! aldosterone +intersection_of: RO:0004009 CHEBI:27584 ! has primary input aldosterone +relationship: RO:0004009 CHEBI:27584 ! has primary input aldosterone created_by: sl creation_date: 2015-03-16T23:07:59Z @@ -129948,8 +129510,8 @@ def: "Any process that modulates the frequency, rate or extent of cholangiocyte synonym: "regulation of hepatoblast proliferation" EXACT [GOC:TermGenie] is_a: GO:0050678 ! regulation of epithelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990705 ! cholangiocyte proliferation -relationship: regulates GO:1990705 ! cholangiocyte proliferation +intersection_of: RO:0002211 GO:1990705 ! regulates (processual) cholangiocyte proliferation +relationship: RO:0002211 GO:1990705 ! regulates (processual) cholangiocyte proliferation created_by: sl creation_date: 2015-03-18T17:56:14Z @@ -129970,8 +129532,8 @@ synonym: "negative regulation of hepatoblast proliferation" EXACT [GOC:TermGenie is_a: GO:0050680 ! negative regulation of epithelial cell proliferation is_a: GO:1904054 ! regulation of cholangiocyte proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990705 ! cholangiocyte proliferation -relationship: negatively_regulates GO:1990705 ! cholangiocyte proliferation +intersection_of: RO:0002212 GO:1990705 ! negatively regulates cholangiocyte proliferation +relationship: RO:0002212 GO:1990705 ! negatively regulates cholangiocyte proliferation created_by: sl creation_date: 2015-03-18T17:56:20Z @@ -129992,8 +129554,8 @@ synonym: "upregulation of hepatoblast proliferation" EXACT [GOC:TermGenie] is_a: GO:0050679 ! positive regulation of epithelial cell proliferation is_a: GO:1904054 ! regulation of cholangiocyte proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990705 ! cholangiocyte proliferation -relationship: positively_regulates GO:1990705 ! cholangiocyte proliferation +intersection_of: RO:0002213 GO:1990705 ! positively regulates cholangiocyte proliferation +relationship: RO:0002213 GO:1990705 ! positively regulates cholangiocyte proliferation created_by: sl creation_date: 2015-03-18T17:56:26Z @@ -130019,8 +129581,8 @@ synonym: "negative regulation of perception of physiological pain" NARROW [GOC:T is_a: GO:0031645 ! negative regulation of nervous system process is_a: GO:0051930 ! regulation of sensory perception of pain intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0019233 ! sensory perception of pain -relationship: negatively_regulates GO:0019233 ! sensory perception of pain +intersection_of: RO:0002212 GO:0019233 ! negatively regulates sensory perception of pain +relationship: RO:0002212 GO:0019233 ! negatively regulates sensory perception of pain created_by: sl creation_date: 2015-03-18T20:33:57Z @@ -130046,8 +129608,8 @@ synonym: "upregulation of sensory perception of pain" EXACT [GOC:TermGenie] is_a: GO:0031646 ! positive regulation of nervous system process is_a: GO:0051930 ! regulation of sensory perception of pain intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0019233 ! sensory perception of pain -relationship: positively_regulates GO:0019233 ! sensory perception of pain +intersection_of: RO:0002213 GO:0019233 ! positively regulates sensory perception of pain +relationship: RO:0002213 GO:0019233 ! positively regulates sensory perception of pain created_by: sl creation_date: 2015-03-18T20:34:03Z @@ -130059,8 +129621,8 @@ def: "Any process that modulates the frequency, rate or extent of cation transme synonym: "regulation of cation transmembrane transport" BROAD [] is_a: GO:0034765 ! regulation of monoatomic ion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0098655 ! monoatomic cation transmembrane transport -relationship: regulates GO:0098655 ! monoatomic cation transmembrane transport +intersection_of: RO:0002211 GO:0098655 ! regulates (processual) monoatomic cation transmembrane transport +relationship: RO:0002211 GO:0098655 ! regulates (processual) monoatomic cation transmembrane transport created_by: sl creation_date: 2015-03-18T21:11:43Z @@ -130076,8 +129638,8 @@ synonym: "inhibition of cation transmembrane transport" NARROW [GOC:TermGenie] is_a: GO:0034766 ! negative regulation of monoatomic ion transmembrane transport is_a: GO:1904062 ! regulation of monoatomic cation transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0098655 ! monoatomic cation transmembrane transport -relationship: negatively_regulates GO:0098655 ! monoatomic cation transmembrane transport +intersection_of: RO:0002212 GO:0098655 ! negatively regulates monoatomic cation transmembrane transport +relationship: RO:0002212 GO:0098655 ! negatively regulates monoatomic cation transmembrane transport created_by: sl creation_date: 2015-03-18T21:11:50Z @@ -130093,8 +129655,8 @@ synonym: "upregulation of cation transmembrane transport" EXACT [GOC:TermGenie] is_a: GO:0034767 ! positive regulation of monoatomic ion transmembrane transport is_a: GO:1904062 ! regulation of monoatomic cation transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0098655 ! monoatomic cation transmembrane transport -relationship: positively_regulates GO:0098655 ! monoatomic cation transmembrane transport +intersection_of: RO:0002213 GO:0098655 ! positively regulates monoatomic cation transmembrane transport +relationship: RO:0002213 GO:0098655 ! positively regulates monoatomic cation transmembrane transport created_by: sl creation_date: 2015-03-18T21:11:55Z @@ -130141,9 +129703,9 @@ synonym: "presynaptic active zone formation" EXACT [GOC:TermGenie] is_a: GO:0022607 ! cellular component assembly is_a: GO:1990709 ! presynaptic active zone organization intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0048786 ! presynaptic active zone +intersection_of: RO:0002588 GO:0048786 ! results in assembly of presynaptic active zone relationship: part_of GO:0099054 ! presynapse assembly -relationship: results_in_assembly_of GO:0048786 ! presynaptic active zone +relationship: RO:0002588 GO:0048786 ! results in assembly of presynaptic active zone created_by: pr creation_date: 2015-03-20T10:36:27Z @@ -130157,8 +129719,8 @@ synonym: "pre-synaptic active zone disassembly" EXACT [GOC:TermGenie] is_a: GO:0022411 ! cellular component disassembly is_a: GO:1990709 ! presynaptic active zone organization intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0048786 ! presynaptic active zone -relationship: results_in_disassembly_of GO:0048786 ! presynaptic active zone +intersection_of: RO:0002590 GO:0048786 ! results in disassembly of presynaptic active zone +relationship: RO:0002590 GO:0048786 ! results in disassembly of presynaptic active zone created_by: pr creation_date: 2015-03-20T10:36:33Z @@ -130171,9 +129733,9 @@ synonym: "regulation of trophectoderm cell proliferation" EXACT [GOC:TermGenie] is_a: GO:0042127 ! regulation of cell population proliferation is_a: GO:0048638 ! regulation of developmental growth intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001834 ! trophectodermal cell proliferation -relationship: regulates GO:0001834 ! trophectodermal cell proliferation -relationship: regulates GO:0048589 ! developmental growth +intersection_of: RO:0002211 GO:0001834 ! regulates (processual) trophectodermal cell proliferation +relationship: RO:0002211 GO:0001834 ! regulates (processual) trophectodermal cell proliferation +relationship: RO:0002211 GO:0048589 ! regulates (processual) developmental growth created_by: tb creation_date: 2015-03-20T16:55:56Z @@ -130194,8 +129756,8 @@ synonym: "negative regulation of trophectoderm cell proliferation" EXACT [GOC:Te is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:1904073 ! regulation of trophectodermal cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001834 ! trophectodermal cell proliferation -relationship: negatively_regulates GO:0001834 ! trophectodermal cell proliferation +intersection_of: RO:0002212 GO:0001834 ! negatively regulates trophectodermal cell proliferation +relationship: RO:0002212 GO:0001834 ! negatively regulates trophectodermal cell proliferation created_by: tb creation_date: 2015-03-20T16:56:02Z @@ -130216,8 +129778,8 @@ synonym: "upregulation of trophectodermal cell proliferation" EXACT [GOC:TermGen is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:1904073 ! regulation of trophectodermal cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001834 ! trophectodermal cell proliferation -relationship: positively_regulates GO:0001834 ! trophectodermal cell proliferation +intersection_of: RO:0002213 GO:0001834 ! positively regulates trophectodermal cell proliferation +relationship: RO:0002213 GO:0001834 ! positively regulates trophectodermal cell proliferation created_by: tb creation_date: 2015-03-20T16:56:08Z @@ -130231,8 +129793,8 @@ synonym: "protein localisation to microvillus" EXACT [GOC:TermGenie] synonym: "protein localization in microvillus" EXACT [GOC:TermGenie] is_a: GO:0008104 ! protein localization intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005902 ! microvillus -relationship: has_target_end_location GO:0005902 ! microvillus +intersection_of: RO:0002339 GO:0005902 ! has target end location microvillus +relationship: RO:0002339 GO:0005902 ! has target end location microvillus created_by: kmv creation_date: 2015-04-01T18:14:41Z @@ -130257,8 +129819,8 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vasopressin stimulus." [GO_REF:0000071, GOC:TermGenie, PMID:22811487] is_a: GO:0043434 ! response to peptide hormone intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:9937 ! vasopressin -relationship: has_primary_input CHEBI:9937 ! vasopressin +intersection_of: RO:0004009 CHEBI:9937 ! has primary input vasopressin +relationship: RO:0004009 CHEBI:9937 ! has primary input vasopressin created_by: sl creation_date: 2015-04-06T19:39:42Z @@ -130270,8 +129832,8 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:0071375 ! cellular response to peptide hormone stimulus is_a: GO:1904116 ! response to vasopressin intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:9937 ! vasopressin -relationship: has_primary_input CHEBI:9937 ! vasopressin +intersection_of: RO:0004009 CHEBI:9937 ! has primary input vasopressin +relationship: RO:0004009 CHEBI:9937 ! has primary input vasopressin created_by: sl creation_date: 2015-04-06T19:39:48Z @@ -130283,8 +129845,8 @@ def: "Any process that modulates the frequency, rate or extent of otic vesicle m is_a: GO:1905330 ! regulation of morphogenesis of an epithelium is_a: GO:2000027 ! regulation of animal organ morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0071600 ! otic vesicle morphogenesis -relationship: regulates GO:0071600 ! otic vesicle morphogenesis +intersection_of: RO:0002211 GO:0071600 ! regulates (processual) otic vesicle morphogenesis +relationship: RO:0002211 GO:0071600 ! regulates (processual) otic vesicle morphogenesis created_by: pga creation_date: 2015-04-07T14:00:56Z @@ -130301,8 +129863,8 @@ is_a: GO:0110111 ! negative regulation of animal organ morphogenesis is_a: GO:1904118 ! regulation of otic vesicle morphogenesis is_a: GO:1905331 ! negative regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0071600 ! otic vesicle morphogenesis -relationship: negatively_regulates GO:0071600 ! otic vesicle morphogenesis +intersection_of: RO:0002212 GO:0071600 ! negatively regulates otic vesicle morphogenesis +relationship: RO:0002212 GO:0071600 ! negatively regulates otic vesicle morphogenesis created_by: pga creation_date: 2015-04-07T14:01:02Z @@ -130319,8 +129881,8 @@ is_a: GO:0110110 ! positive regulation of animal organ morphogenesis is_a: GO:1904118 ! regulation of otic vesicle morphogenesis is_a: GO:1905332 ! positive regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0071600 ! otic vesicle morphogenesis -relationship: positively_regulates GO:0071600 ! otic vesicle morphogenesis +intersection_of: RO:0002213 GO:0071600 ! positively regulates otic vesicle morphogenesis +relationship: RO:0002213 GO:0071600 ! positively regulates otic vesicle morphogenesis created_by: pga creation_date: 2015-04-07T14:01:08Z @@ -130353,12 +129915,11 @@ synonym: "negative regulation of carotenoid anabolism" EXACT [GOC:TermGenie] synonym: "negative regulation of carotenoid biosynthesis" EXACT [GOC:TermGenie] synonym: "negative regulation of carotenoid formation" EXACT [GOC:TermGenie] synonym: "negative regulation of carotenoid synthesis" EXACT [GOC:TermGenie] -is_a: GO:0031327 ! negative regulation of cellular biosynthetic process is_a: GO:0045827 ! negative regulation of isoprenoid metabolic process is_a: GO:0051055 ! negative regulation of lipid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0016117 ! carotenoid biosynthetic process -relationship: negatively_regulates GO:0016117 ! carotenoid biosynthetic process +intersection_of: RO:0002212 GO:0016117 ! negatively regulates carotenoid biosynthetic process +relationship: RO:0002212 GO:0016117 ! negatively regulates carotenoid biosynthetic process created_by: tb creation_date: 2015-04-13T19:39:13Z @@ -130391,12 +129952,11 @@ synonym: "upregulation of carotenoid biosynthesis" EXACT [GOC:TermGenie] synonym: "upregulation of carotenoid biosynthetic process" EXACT [GOC:TermGenie] synonym: "upregulation of carotenoid formation" EXACT [GOC:TermGenie] synonym: "upregulation of carotenoid synthesis" EXACT [GOC:TermGenie] -is_a: GO:0031328 ! positive regulation of cellular biosynthetic process is_a: GO:0045828 ! positive regulation of isoprenoid metabolic process is_a: GO:0046889 ! positive regulation of lipid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0016117 ! carotenoid biosynthetic process -relationship: positively_regulates GO:0016117 ! carotenoid biosynthetic process +intersection_of: RO:0002213 GO:0016117 ! positively regulates carotenoid biosynthetic process +relationship: RO:0002213 GO:0016117 ! positively regulates carotenoid biosynthetic process created_by: tb creation_date: 2015-04-13T19:39:19Z @@ -130414,10 +129974,10 @@ is_a: GO:0051447 ! negative regulation of meiotic cell cycle is_a: GO:1900194 ! negative regulation of oocyte maturation is_a: GO:1903538 ! regulation of meiotic cell cycle process involved in oocyte maturation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1903537 ! meiotic cell cycle process involved in oocyte maturation -relationship: negatively_regulates GO:0001556 ! oocyte maturation -relationship: negatively_regulates GO:0051321 ! meiotic cell cycle -relationship: negatively_regulates GO:1903537 ! meiotic cell cycle process involved in oocyte maturation +intersection_of: RO:0002212 GO:1903537 ! negatively regulates meiotic cell cycle process involved in oocyte maturation +relationship: RO:0002212 GO:0001556 ! negatively regulates oocyte maturation +relationship: RO:0002212 GO:0051321 ! negatively regulates meiotic cell cycle +relationship: RO:0002212 GO:1903537 ! negatively regulates meiotic cell cycle process involved in oocyte maturation created_by: tb creation_date: 2015-04-14T15:59:22Z @@ -130434,9 +129994,9 @@ is_a: GO:0051446 ! positive regulation of meiotic cell cycle is_a: GO:0090068 ! positive regulation of cell cycle process is_a: GO:1903538 ! regulation of meiotic cell cycle process involved in oocyte maturation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1903537 ! meiotic cell cycle process involved in oocyte maturation -relationship: positively_regulates GO:0051321 ! meiotic cell cycle -relationship: positively_regulates GO:1903537 ! meiotic cell cycle process involved in oocyte maturation +intersection_of: RO:0002213 GO:1903537 ! positively regulates meiotic cell cycle process involved in oocyte maturation +relationship: RO:0002213 GO:0051321 ! positively regulates meiotic cell cycle +relationship: RO:0002213 GO:1903537 ! positively regulates meiotic cell cycle process involved in oocyte maturation created_by: tb creation_date: 2015-04-14T15:59:28Z @@ -130448,8 +130008,8 @@ def: "Any process that modulates the frequency, rate or extent of bleb assembly. synonym: "regulation of cell blebbing" EXACT [GOC:TermGenie] is_a: GO:0120032 ! regulation of plasma membrane bounded cell projection assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032060 ! bleb assembly -relationship: regulates GO:0032060 ! bleb assembly +intersection_of: RO:0002211 GO:0032060 ! regulates (processual) bleb assembly +relationship: RO:0002211 GO:0032060 ! regulates (processual) bleb assembly created_by: als creation_date: 2015-04-23T09:32:19Z @@ -130470,8 +130030,8 @@ synonym: "negative regulation of cell blebbing" EXACT [GOC:TermGenie] is_a: GO:0120033 ! negative regulation of plasma membrane bounded cell projection assembly is_a: GO:1904170 ! regulation of bleb assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0032060 ! bleb assembly -relationship: negatively_regulates GO:0032060 ! bleb assembly +intersection_of: RO:0002212 GO:0032060 ! negatively regulates bleb assembly +relationship: RO:0002212 GO:0032060 ! negatively regulates bleb assembly created_by: als creation_date: 2015-04-23T09:32:25Z @@ -130492,8 +130052,8 @@ synonym: "upregulation of cell blebbing" EXACT [GOC:TermGenie] is_a: GO:0120034 ! positive regulation of plasma membrane bounded cell projection assembly is_a: GO:1904170 ! regulation of bleb assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0032060 ! bleb assembly -relationship: positively_regulates GO:0032060 ! bleb assembly +intersection_of: RO:0002213 GO:0032060 ! positively regulates bleb assembly +relationship: RO:0002213 GO:0032060 ! positively regulates bleb assembly created_by: als creation_date: 2015-04-23T09:32:31Z @@ -130505,8 +130065,8 @@ def: "Any process that modulates the frequency, rate or extent of adipose tissue synonym: "regulation of adipogenesis" RELATED [GOC:TermGenie] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060612 ! adipose tissue development -relationship: regulates GO:0060612 ! adipose tissue development +intersection_of: RO:0002211 GO:0060612 ! regulates (processual) adipose tissue development +relationship: RO:0002211 GO:0060612 ! regulates (processual) adipose tissue development created_by: sl creation_date: 2015-04-29T20:01:01Z @@ -130528,9 +130088,9 @@ is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1904177 ! regulation of adipose tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060612 ! adipose tissue development -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0060612 ! adipose tissue development +intersection_of: RO:0002212 GO:0060612 ! negatively regulates adipose tissue development +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0060612 ! negatively regulates adipose tissue development created_by: sl creation_date: 2015-04-29T20:01:07Z @@ -130552,9 +130112,9 @@ is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1904177 ! regulation of adipose tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060612 ! adipose tissue development -relationship: positively_regulates GO:0032501 ! multicellular organismal process -relationship: positively_regulates GO:0060612 ! adipose tissue development +intersection_of: RO:0002213 GO:0060612 ! positively regulates adipose tissue development +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process +relationship: RO:0002213 GO:0060612 ! positively regulates adipose tissue development created_by: sl creation_date: 2015-04-29T20:01:13Z @@ -130568,8 +130128,8 @@ synonym: "regulation of epithelial cell of bile duct apoptosis" NARROW [GOC:Term synonym: "regulation of epithelial cell of bile duct apoptotic process" EXACT [GOC:TermGenie] is_a: GO:1904035 ! regulation of epithelial cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1902488 ! cholangiocyte apoptotic process -relationship: regulates GO:1902488 ! cholangiocyte apoptotic process +intersection_of: RO:0002211 GO:1902488 ! regulates (processual) cholangiocyte apoptotic process +relationship: RO:0002211 GO:1902488 ! regulates (processual) cholangiocyte apoptotic process created_by: sl creation_date: 2015-05-06T15:25:48Z @@ -130600,8 +130160,8 @@ synonym: "negative regulation of epithelial cell of bile duct apoptotic process" is_a: GO:1904036 ! negative regulation of epithelial cell apoptotic process is_a: GO:1904192 ! regulation of cholangiocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1902488 ! cholangiocyte apoptotic process -relationship: negatively_regulates GO:1902488 ! cholangiocyte apoptotic process +intersection_of: RO:0002212 GO:1902488 ! negatively regulates cholangiocyte apoptotic process +relationship: RO:0002212 GO:1902488 ! negatively regulates cholangiocyte apoptotic process created_by: sl creation_date: 2015-05-06T15:25:55Z @@ -130632,8 +130192,8 @@ synonym: "upregulation of epithelial cell of bile duct apoptotic process" EXACT is_a: GO:1904037 ! positive regulation of epithelial cell apoptotic process is_a: GO:1904192 ! regulation of cholangiocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1902488 ! cholangiocyte apoptotic process -relationship: positively_regulates GO:1902488 ! cholangiocyte apoptotic process +intersection_of: RO:0002213 GO:1902488 ! positively regulates cholangiocyte apoptotic process +relationship: RO:0002213 GO:1902488 ! positively regulates cholangiocyte apoptotic process created_by: sl creation_date: 2015-05-06T15:26:00Z @@ -130644,8 +130204,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of granulosa cell proliferation." [GO_REF:0000058, GOC:TermGenie, PMID:22383759] is_a: GO:0050678 ! regulation of epithelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990739 ! granulosa cell proliferation -relationship: regulates GO:1990739 ! granulosa cell proliferation +intersection_of: RO:0002211 GO:1990739 ! regulates (processual) granulosa cell proliferation +relationship: RO:0002211 GO:1990739 ! regulates (processual) granulosa cell proliferation created_by: sl creation_date: 2015-05-07T17:02:25Z @@ -130661,8 +130221,8 @@ synonym: "inhibition of granulosa cell proliferation" NARROW [GOC:TermGenie] is_a: GO:0050680 ! negative regulation of epithelial cell proliferation is_a: GO:1904195 ! regulation of granulosa cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990739 ! granulosa cell proliferation -relationship: negatively_regulates GO:1990739 ! granulosa cell proliferation +intersection_of: RO:0002212 GO:1990739 ! negatively regulates granulosa cell proliferation +relationship: RO:0002212 GO:1990739 ! negatively regulates granulosa cell proliferation created_by: sl creation_date: 2015-05-07T17:02:34Z @@ -130678,8 +130238,8 @@ synonym: "upregulation of granulosa cell proliferation" EXACT [GOC:TermGenie] is_a: GO:0050679 ! positive regulation of epithelial cell proliferation is_a: GO:1904195 ! regulation of granulosa cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990739 ! granulosa cell proliferation -relationship: positively_regulates GO:1990739 ! granulosa cell proliferation +intersection_of: RO:0002213 GO:1990739 ! positively regulates granulosa cell proliferation +relationship: RO:0002213 GO:1990739 ! positively regulates granulosa cell proliferation created_by: sl creation_date: 2015-05-07T17:02:40Z @@ -130691,8 +130251,8 @@ def: "Any process that modulates the frequency, rate or extent of skeletal muscl is_a: GO:0014733 ! regulation of skeletal muscle adaptation is_a: GO:0014743 ! regulation of muscle hypertrophy intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014734 ! skeletal muscle hypertrophy -relationship: regulates GO:0014734 ! skeletal muscle hypertrophy +intersection_of: RO:0002211 GO:0014734 ! regulates (processual) skeletal muscle hypertrophy +relationship: RO:0002211 GO:0014734 ! regulates (processual) skeletal muscle hypertrophy created_by: sl creation_date: 2015-05-08T17:38:13Z @@ -130709,8 +130269,8 @@ is_a: GO:0014741 ! negative regulation of muscle hypertrophy is_a: GO:0014745 ! negative regulation of muscle adaptation is_a: GO:1904204 ! regulation of skeletal muscle hypertrophy intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014734 ! skeletal muscle hypertrophy -relationship: negatively_regulates GO:0014734 ! skeletal muscle hypertrophy +intersection_of: RO:0002212 GO:0014734 ! negatively regulates skeletal muscle hypertrophy +relationship: RO:0002212 GO:0014734 ! negatively regulates skeletal muscle hypertrophy created_by: sl creation_date: 2015-05-08T17:38:19Z @@ -130727,8 +130287,8 @@ is_a: GO:0014742 ! positive regulation of muscle hypertrophy is_a: GO:0014744 ! positive regulation of muscle adaptation is_a: GO:1904204 ! regulation of skeletal muscle hypertrophy intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014734 ! skeletal muscle hypertrophy -relationship: positively_regulates GO:0014734 ! skeletal muscle hypertrophy +intersection_of: RO:0002213 GO:0014734 ! positively regulates skeletal muscle hypertrophy +relationship: RO:0002213 GO:0014734 ! positively regulates skeletal muscle hypertrophy created_by: sl creation_date: 2015-05-08T17:38:25Z @@ -130739,8 +130299,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized features of a pericyte cell." [GO_REF:0000086, GOC:dph, GOC:TermGenie, PMID:23868830] is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000669 ! pericyte -relationship: results_in_acquisition_of_features_of CL:0000669 ! pericyte +intersection_of: RO:0002315 CL:0000669 ! results in acquisition of features of pericyte +relationship: RO:0002315 CL:0000669 ! results in acquisition of features of pericyte created_by: dph creation_date: 2015-05-15T14:50:13Z @@ -130751,11 +130311,10 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of bile acid metabolic process." [GO_REF:0000058, GOC:bf, GOC:TermGenie] synonym: "regulation of bile acid metabolism" EXACT [GOC:TermGenie] is_a: GO:0019218 ! regulation of steroid metabolic process -is_a: GO:0031323 ! regulation of cellular metabolic process is_a: GO:0062012 ! regulation of small molecule metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008206 ! bile acid metabolic process -relationship: regulates GO:0008206 ! bile acid metabolic process +intersection_of: RO:0002211 GO:0008206 ! regulates (processual) bile acid metabolic process +relationship: RO:0002211 GO:0008206 ! regulates (processual) bile acid metabolic process created_by: bf creation_date: 2015-05-20T11:04:28Z @@ -130773,13 +130332,12 @@ synonym: "downregulation of bile acid metabolism" EXACT [GOC:TermGenie] synonym: "inhibition of bile acid metabolic process" NARROW [GOC:TermGenie] synonym: "inhibition of bile acid metabolism" NARROW [GOC:TermGenie] synonym: "negative regulation of bile acid metabolism" EXACT [GOC:TermGenie] -is_a: GO:0031324 ! negative regulation of cellular metabolic process is_a: GO:0045939 ! negative regulation of steroid metabolic process is_a: GO:0062014 ! negative regulation of small molecule metabolic process is_a: GO:1904251 ! regulation of bile acid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008206 ! bile acid metabolic process -relationship: negatively_regulates GO:0008206 ! bile acid metabolic process +intersection_of: RO:0002212 GO:0008206 ! negatively regulates bile acid metabolic process +relationship: RO:0002212 GO:0008206 ! negatively regulates bile acid metabolic process created_by: bf creation_date: 2015-05-20T11:04:35Z @@ -130797,13 +130355,12 @@ synonym: "up-regulation of bile acid metabolic process" EXACT [GOC:TermGenie] synonym: "up-regulation of bile acid metabolism" EXACT [GOC:TermGenie] synonym: "upregulation of bile acid metabolic process" EXACT [GOC:TermGenie] synonym: "upregulation of bile acid metabolism" EXACT [GOC:TermGenie] -is_a: GO:0031325 ! positive regulation of cellular metabolic process is_a: GO:0045940 ! positive regulation of steroid metabolic process is_a: GO:0062013 ! positive regulation of small molecule metabolic process is_a: GO:1904251 ! regulation of bile acid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008206 ! bile acid metabolic process -relationship: positively_regulates GO:0008206 ! bile acid metabolic process +intersection_of: RO:0002213 GO:0008206 ! positively regulates bile acid metabolic process +relationship: RO:0002213 GO:0008206 ! positively regulates bile acid metabolic process created_by: bf creation_date: 2015-05-20T11:04:40Z @@ -130812,82 +130369,19 @@ id: GO:1904254 name: regulation of iron ion transmembrane transporter activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of an iron transmembrane transporter activity." [GO_REF:0000059, GOC:BHF, GOC:kom, GOC:TermGenie, PMID:15514116] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "regulation of iron cation channel activity" EXACT [GOC:TermGenie] synonym: "regulation of iron channel activity" EXACT [] synonym: "regulation of iron-specific channel activity" EXACT [GOC:TermGenie] is_a: GO:0032412 ! regulation of monoatomic ion transmembrane transporter activity is_a: GO:0034759 ! regulation of iron ion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0005381 ! iron ion transmembrane transporter activity -relationship: regulates GO:0005381 ! iron ion transmembrane transporter activity -relationship: regulates GO:0034755 ! iron ion transmembrane transport +intersection_of: RO:0002211 GO:0005381 ! regulates (processual) iron ion transmembrane transporter activity +relationship: RO:0002211 GO:0005381 ! regulates (processual) iron ion transmembrane transporter activity +relationship: RO:0002211 GO:0034755 ! regulates (processual) iron ion transmembrane transport created_by: kom creation_date: 2015-05-20T14:05:00Z -[Term] -id: GO:1904255 -name: negative regulation of iron ion transmembrane transporter activity -namespace: biological_process -def: "Any process that stops, prevents or reduces the frequency, rate or extent of an iron transmembrane transporter activity." [GO_REF:0000059, GOC:BHF, GOC:kom, GOC:TermGenie, PMID:15514116] -subset: gocheck_do_not_annotate -synonym: "down regulation of iron cation channel activity" EXACT [GOC:TermGenie] -synonym: "down regulation of iron channel activity" EXACT [GOC:TermGenie] -synonym: "down regulation of iron-specific channel activity" EXACT [GOC:TermGenie] -synonym: "down-regulation of iron cation channel activity" EXACT [GOC:TermGenie] -synonym: "down-regulation of iron channel activity" EXACT [GOC:TermGenie] -synonym: "down-regulation of iron-specific channel activity" EXACT [GOC:TermGenie] -synonym: "downregulation of iron cation channel activity" EXACT [GOC:TermGenie] -synonym: "downregulation of iron channel activity" EXACT [GOC:TermGenie] -synonym: "downregulation of iron-specific channel activity" EXACT [GOC:TermGenie] -synonym: "inhibition of iron cation channel activity" NARROW [GOC:TermGenie] -synonym: "inhibition of iron channel activity" NARROW [GOC:TermGenie] -synonym: "inhibition of iron-specific channel activity" NARROW [GOC:TermGenie] -synonym: "negative regulation of iron cation channel activity" EXACT [GOC:TermGenie] -synonym: "negative regulation of iron channel activity" EXACT [] -synonym: "negative regulation of iron-specific channel activity" EXACT [GOC:TermGenie] -is_a: GO:0032413 ! negative regulation of ion transmembrane transporter activity -is_a: GO:0034760 ! negative regulation of iron ion transmembrane transport -is_a: GO:1904254 ! regulation of iron ion transmembrane transporter activity -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0005381 ! iron ion transmembrane transporter activity -relationship: negatively_regulates GO:0005381 ! iron ion transmembrane transporter activity -relationship: negatively_regulates GO:0034755 ! iron ion transmembrane transport -created_by: kom -creation_date: 2015-05-20T14:05:06Z - -[Term] -id: GO:1904256 -name: positive regulation of iron ion transmembrane transporter activity -namespace: biological_process -def: "Any process that activates or increases the frequency, rate or extent of an iron transmembrane transporter activity." [GO_REF:0000059, GOC:BHF, GOC:kom, GOC:TermGenie, PMID:15514116] -subset: gocheck_do_not_annotate -synonym: "activation of iron cation channel activity" NARROW [GOC:TermGenie] -synonym: "activation of iron channel activity" NARROW [GOC:TermGenie] -synonym: "activation of iron-specific channel activity" NARROW [GOC:TermGenie] -synonym: "positive regulation of iron cation channel activity" EXACT [GOC:TermGenie] -synonym: "positive regulation of iron channel activity" EXACT [] -synonym: "positive regulation of iron transmembrane transporter activity" EXACT [] -synonym: "positive regulation of iron-specific channel activity" EXACT [GOC:TermGenie] -synonym: "up regulation of iron cation channel activity" EXACT [GOC:TermGenie] -synonym: "up regulation of iron channel activity" EXACT [GOC:TermGenie] -synonym: "up regulation of iron-specific channel activity" EXACT [GOC:TermGenie] -synonym: "up-regulation of iron cation channel activity" EXACT [GOC:TermGenie] -synonym: "up-regulation of iron channel activity" EXACT [GOC:TermGenie] -synonym: "up-regulation of iron-specific channel activity" EXACT [GOC:TermGenie] -synonym: "upregulation of iron cation channel activity" EXACT [GOC:TermGenie] -synonym: "upregulation of iron channel activity" EXACT [GOC:TermGenie] -synonym: "upregulation of iron-specific channel activity" EXACT [GOC:TermGenie] -is_a: GO:0032414 ! positive regulation of ion transmembrane transporter activity -is_a: GO:0034761 ! positive regulation of iron ion transmembrane transport -is_a: GO:1904254 ! regulation of iron ion transmembrane transporter activity -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0005381 ! iron ion transmembrane transporter activity -relationship: positively_regulates GO:0005381 ! iron ion transmembrane transporter activity -relationship: positively_regulates GO:0034755 ! iron ion transmembrane transport -created_by: kom -creation_date: 2015-05-20T14:05:12Z - [Term] id: GO:1904266 name: regulation of Schwann cell chemotaxis @@ -130896,8 +130390,8 @@ def: "Any process that modulates the frequency, rate or extent of Schwann cell c is_a: GO:0050920 ! regulation of chemotaxis is_a: GO:1900147 ! regulation of Schwann cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990751 ! Schwann cell chemotaxis -relationship: regulates GO:1990751 ! Schwann cell chemotaxis +intersection_of: RO:0002211 GO:1990751 ! regulates (processual) Schwann cell chemotaxis +relationship: RO:0002211 GO:1990751 ! regulates (processual) Schwann cell chemotaxis created_by: sl creation_date: 2015-05-28T17:47:41Z @@ -130914,8 +130408,8 @@ is_a: GO:0050922 ! negative regulation of chemotaxis is_a: GO:1900148 ! negative regulation of Schwann cell migration is_a: GO:1904266 ! regulation of Schwann cell chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990751 ! Schwann cell chemotaxis -relationship: negatively_regulates GO:1990751 ! Schwann cell chemotaxis +intersection_of: RO:0002212 GO:1990751 ! negatively regulates Schwann cell chemotaxis +relationship: RO:0002212 GO:1990751 ! negatively regulates Schwann cell chemotaxis created_by: sl creation_date: 2015-05-28T17:47:48Z @@ -130932,8 +130426,8 @@ is_a: GO:0050921 ! positive regulation of chemotaxis is_a: GO:1900149 ! positive regulation of Schwann cell migration is_a: GO:1904266 ! regulation of Schwann cell chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990751 ! Schwann cell chemotaxis -relationship: positively_regulates GO:1990751 ! Schwann cell chemotaxis +intersection_of: RO:0002213 GO:1990751 ! positively regulates Schwann cell chemotaxis +relationship: RO:0002213 GO:1990751 ! positively regulates Schwann cell chemotaxis created_by: sl creation_date: 2015-05-28T17:47:55Z @@ -130965,8 +130459,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of gastro-intestinal system smooth muscle contraction." [GO_REF:0000058, GOC:TermGenie, PMID:10821044] is_a: GO:0006940 ! regulation of smooth muscle contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014831 ! gastro-intestinal system smooth muscle contraction -relationship: regulates GO:0014831 ! gastro-intestinal system smooth muscle contraction +intersection_of: RO:0002211 GO:0014831 ! regulates (processual) gastro-intestinal system smooth muscle contraction +relationship: RO:0002211 GO:0014831 ! regulates (processual) gastro-intestinal system smooth muscle contraction created_by: sl creation_date: 2015-06-09T23:18:42Z @@ -130982,8 +130476,8 @@ synonym: "inhibition of gastro-intestinal system smooth muscle contraction" NARR is_a: GO:0045986 ! negative regulation of smooth muscle contraction is_a: GO:1904304 ! regulation of gastro-intestinal system smooth muscle contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014831 ! gastro-intestinal system smooth muscle contraction -relationship: negatively_regulates GO:0014831 ! gastro-intestinal system smooth muscle contraction +intersection_of: RO:0002212 GO:0014831 ! negatively regulates gastro-intestinal system smooth muscle contraction +relationship: RO:0002212 GO:0014831 ! negatively regulates gastro-intestinal system smooth muscle contraction created_by: sl creation_date: 2015-06-09T23:18:48Z @@ -130999,8 +130493,8 @@ synonym: "upregulation of gastro-intestinal system smooth muscle contraction" EX is_a: GO:0045987 ! positive regulation of smooth muscle contraction is_a: GO:1904304 ! regulation of gastro-intestinal system smooth muscle contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014831 ! gastro-intestinal system smooth muscle contraction -relationship: positively_regulates GO:0014831 ! gastro-intestinal system smooth muscle contraction +intersection_of: RO:0002213 GO:0014831 ! positively regulates gastro-intestinal system smooth muscle contraction +relationship: RO:0002213 GO:0014831 ! positively regulates gastro-intestinal system smooth muscle contraction created_by: sl creation_date: 2015-06-09T23:18:54Z @@ -131015,8 +130509,8 @@ is_a: GO:0006940 ! regulation of smooth muscle contraction is_a: GO:0044062 ! regulation of excretion is_a: GO:0098801 ! regulation of renal system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060083 ! smooth muscle contraction involved in micturition -relationship: regulates GO:0060083 ! smooth muscle contraction involved in micturition +intersection_of: RO:0002211 GO:0060083 ! regulates (processual) smooth muscle contraction involved in micturition +relationship: RO:0002211 GO:0060083 ! regulates (processual) smooth muscle contraction involved in micturition created_by: sl creation_date: 2015-06-10T18:46:11Z @@ -131042,8 +130536,8 @@ synonym: "negative regulation of urinary bladder smooth muscle contraction invol is_a: GO:0045986 ! negative regulation of smooth muscle contraction is_a: GO:1904318 ! regulation of smooth muscle contraction involved in micturition intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060083 ! smooth muscle contraction involved in micturition -relationship: negatively_regulates GO:0060083 ! smooth muscle contraction involved in micturition +intersection_of: RO:0002212 GO:0060083 ! negatively regulates smooth muscle contraction involved in micturition +relationship: RO:0002212 GO:0060083 ! negatively regulates smooth muscle contraction involved in micturition created_by: sl creation_date: 2015-06-10T18:46:17Z @@ -131069,8 +130563,8 @@ synonym: "upregulation of urinary bladder smooth muscle contraction involved in is_a: GO:0045987 ! positive regulation of smooth muscle contraction is_a: GO:1904318 ! regulation of smooth muscle contraction involved in micturition intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060083 ! smooth muscle contraction involved in micturition -relationship: positively_regulates GO:0060083 ! smooth muscle contraction involved in micturition +intersection_of: RO:0002213 GO:0060083 ! positively regulates smooth muscle contraction involved in micturition +relationship: RO:0002213 GO:0060083 ! positively regulates smooth muscle contraction involved in micturition created_by: sl creation_date: 2015-06-10T18:46:23Z @@ -131081,8 +130575,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of dopaminergic neuron differentiation." [GO_REF:0000058, GOC:TermGenie, PMID:15522889] is_a: GO:0045664 ! regulation of neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0071542 ! dopaminergic neuron differentiation -relationship: regulates GO:0071542 ! dopaminergic neuron differentiation +intersection_of: RO:0002211 GO:0071542 ! regulates (processual) dopaminergic neuron differentiation +relationship: RO:0002211 GO:0071542 ! regulates (processual) dopaminergic neuron differentiation created_by: sl creation_date: 2015-06-11T18:06:19Z @@ -131098,8 +130592,8 @@ synonym: "inhibition of dopaminergic neuron differentiation" NARROW [GOC:TermGen is_a: GO:0045665 ! negative regulation of neuron differentiation is_a: GO:1904338 ! regulation of dopaminergic neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0071542 ! dopaminergic neuron differentiation -relationship: negatively_regulates GO:0071542 ! dopaminergic neuron differentiation +intersection_of: RO:0002212 GO:0071542 ! negatively regulates dopaminergic neuron differentiation +relationship: RO:0002212 GO:0071542 ! negatively regulates dopaminergic neuron differentiation created_by: sl creation_date: 2015-06-11T18:06:25Z @@ -131115,8 +130609,8 @@ synonym: "upregulation of dopaminergic neuron differentiation" EXACT [GOC:TermGe is_a: GO:0045666 ! positive regulation of neuron differentiation is_a: GO:1904338 ! regulation of dopaminergic neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0071542 ! dopaminergic neuron differentiation -relationship: positively_regulates GO:0071542 ! dopaminergic neuron differentiation +intersection_of: RO:0002213 GO:0071542 ! positively regulates dopaminergic neuron differentiation +relationship: RO:0002213 GO:0071542 ! positively regulates dopaminergic neuron differentiation created_by: sl creation_date: 2015-06-11T18:06:32Z @@ -131127,9 +130621,9 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of colon smooth muscle contraction." [GO_REF:0000058, GOC:TermGenie, PMID:24170253] is_a: GO:1904304 ! regulation of gastro-intestinal system smooth muscle contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990765 ! colon smooth muscle contraction -relationship: regulates GO:0014831 ! gastro-intestinal system smooth muscle contraction -relationship: regulates GO:1990765 ! colon smooth muscle contraction +intersection_of: RO:0002211 GO:1990765 ! regulates (processual) colon smooth muscle contraction +relationship: RO:0002211 GO:0014831 ! regulates (processual) gastro-intestinal system smooth muscle contraction +relationship: RO:0002211 GO:1990765 ! regulates (processual) colon smooth muscle contraction created_by: sl creation_date: 2015-06-11T21:16:58Z @@ -131145,9 +130639,9 @@ synonym: "inhibition of colon smooth muscle contraction" NARROW [GOC:TermGenie] is_a: GO:1904305 ! negative regulation of gastro-intestinal system smooth muscle contraction is_a: GO:1904341 ! regulation of colon smooth muscle contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990765 ! colon smooth muscle contraction -relationship: negatively_regulates GO:0014831 ! gastro-intestinal system smooth muscle contraction -relationship: negatively_regulates GO:1990765 ! colon smooth muscle contraction +intersection_of: RO:0002212 GO:1990765 ! negatively regulates colon smooth muscle contraction +relationship: RO:0002212 GO:0014831 ! negatively regulates gastro-intestinal system smooth muscle contraction +relationship: RO:0002212 GO:1990765 ! negatively regulates colon smooth muscle contraction created_by: sl creation_date: 2015-06-11T21:17:05Z @@ -131163,9 +130657,9 @@ synonym: "upregulation of colon smooth muscle contraction" EXACT [GOC:TermGenie] is_a: GO:1904306 ! positive regulation of gastro-intestinal system smooth muscle contraction is_a: GO:1904341 ! regulation of colon smooth muscle contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990765 ! colon smooth muscle contraction -relationship: positively_regulates GO:0014831 ! gastro-intestinal system smooth muscle contraction -relationship: positively_regulates GO:1990765 ! colon smooth muscle contraction +intersection_of: RO:0002213 GO:1990765 ! positively regulates colon smooth muscle contraction +relationship: RO:0002213 GO:0014831 ! positively regulates gastro-intestinal system smooth muscle contraction +relationship: RO:0002213 GO:1990765 ! positively regulates colon smooth muscle contraction created_by: sl creation_date: 2015-06-11T21:17:11Z @@ -131177,8 +130671,8 @@ def: "Any process that modulates the frequency, rate or extent of gastric mucosa synonym: "regulation of stomach mucosal blood circulation" EXACT [GOC:TermGenie] is_a: GO:1903522 ! regulation of blood circulation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990768 ! gastric mucosal blood circulation -relationship: regulates GO:1990768 ! gastric mucosal blood circulation +intersection_of: RO:0002211 GO:1990768 ! regulates (processual) gastric mucosal blood circulation +relationship: RO:0002211 GO:1990768 ! regulates (processual) gastric mucosal blood circulation created_by: sl creation_date: 2015-06-11T21:20:31Z @@ -131199,8 +130693,8 @@ synonym: "negative regulation of stomach mucosal blood circulation" EXACT [GOC:T is_a: GO:1903523 ! negative regulation of blood circulation is_a: GO:1904344 ! regulation of gastric mucosal blood circulation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990768 ! gastric mucosal blood circulation -relationship: negatively_regulates GO:1990768 ! gastric mucosal blood circulation +intersection_of: RO:0002212 GO:1990768 ! negatively regulates gastric mucosal blood circulation +relationship: RO:0002212 GO:1990768 ! negatively regulates gastric mucosal blood circulation created_by: sl creation_date: 2015-06-11T21:20:44Z @@ -131221,8 +130715,8 @@ synonym: "upregulation of stomach mucosal blood circulation" EXACT [GOC:TermGeni is_a: GO:1903524 ! positive regulation of blood circulation is_a: GO:1904344 ! regulation of gastric mucosal blood circulation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990768 ! gastric mucosal blood circulation -relationship: positively_regulates GO:1990768 ! gastric mucosal blood circulation +intersection_of: RO:0002213 GO:1990768 ! positively regulates gastric mucosal blood circulation +relationship: RO:0002213 GO:1990768 ! positively regulates gastric mucosal blood circulation created_by: sl creation_date: 2015-06-11T21:20:50Z @@ -131233,9 +130727,9 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of small intestine smooth muscle contraction." [GO_REF:0000058, GOC:TermGenie, PMID:11991626] is_a: GO:1904304 ! regulation of gastro-intestinal system smooth muscle contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990770 ! small intestine smooth muscle contraction -relationship: regulates GO:0014831 ! gastro-intestinal system smooth muscle contraction -relationship: regulates GO:1990770 ! small intestine smooth muscle contraction +intersection_of: RO:0002211 GO:1990770 ! regulates (processual) small intestine smooth muscle contraction +relationship: RO:0002211 GO:0014831 ! regulates (processual) gastro-intestinal system smooth muscle contraction +relationship: RO:0002211 GO:1990770 ! regulates (processual) small intestine smooth muscle contraction created_by: sl creation_date: 2015-06-11T21:37:34Z @@ -131251,9 +130745,9 @@ synonym: "inhibition of small intestine smooth muscle contraction" NARROW [GOC:T is_a: GO:1904305 ! negative regulation of gastro-intestinal system smooth muscle contraction is_a: GO:1904347 ! regulation of small intestine smooth muscle contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990770 ! small intestine smooth muscle contraction -relationship: negatively_regulates GO:0014831 ! gastro-intestinal system smooth muscle contraction -relationship: negatively_regulates GO:1990770 ! small intestine smooth muscle contraction +intersection_of: RO:0002212 GO:1990770 ! negatively regulates small intestine smooth muscle contraction +relationship: RO:0002212 GO:0014831 ! negatively regulates gastro-intestinal system smooth muscle contraction +relationship: RO:0002212 GO:1990770 ! negatively regulates small intestine smooth muscle contraction created_by: sl creation_date: 2015-06-11T21:37:40Z @@ -131269,9 +130763,9 @@ synonym: "upregulation of small intestine smooth muscle contraction" EXACT [GOC: is_a: GO:1904306 ! positive regulation of gastro-intestinal system smooth muscle contraction is_a: GO:1904347 ! regulation of small intestine smooth muscle contraction intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990770 ! small intestine smooth muscle contraction -relationship: positively_regulates GO:0014831 ! gastro-intestinal system smooth muscle contraction -relationship: positively_regulates GO:1990770 ! small intestine smooth muscle contraction +intersection_of: RO:0002213 GO:1990770 ! positively regulates small intestine smooth muscle contraction +relationship: RO:0002213 GO:0014831 ! positively regulates gastro-intestinal system smooth muscle contraction +relationship: RO:0002213 GO:1990770 ! positively regulates small intestine smooth muscle contraction created_by: sl creation_date: 2015-06-11T21:37:46Z @@ -131286,8 +130780,8 @@ synonym: "regulation of vacuolar protein catabolism" RELATED [GOC:TermGenie] synonym: "regulation of vacuolar protein degradation" RELATED [GOC:TermGenie] is_a: GO:0042176 ! regulation of protein catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007039 ! protein catabolic process in the vacuole -relationship: regulates GO:0007039 ! protein catabolic process in the vacuole +intersection_of: RO:0002211 GO:0007039 ! regulates (processual) protein catabolic process in the vacuole +relationship: RO:0002211 GO:0007039 ! regulates (processual) protein catabolic process in the vacuole created_by: rl creation_date: 2015-06-12T09:10:36Z @@ -131323,8 +130817,8 @@ synonym: "negative regulation of vacuolar protein degradation" RELATED [GOC:Term is_a: GO:0042177 ! negative regulation of protein catabolic process is_a: GO:1904350 ! regulation of protein catabolic process in the vacuole intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007039 ! protein catabolic process in the vacuole -relationship: negatively_regulates GO:0007039 ! protein catabolic process in the vacuole +intersection_of: RO:0002212 GO:0007039 ! negatively regulates protein catabolic process in the vacuole +relationship: RO:0002212 GO:0007039 ! negatively regulates protein catabolic process in the vacuole created_by: rl creation_date: 2015-06-12T09:10:42Z @@ -131360,8 +130854,8 @@ synonym: "upregulation of vacuolar protein degradation" RELATED [GOC:TermGenie] is_a: GO:0045732 ! positive regulation of protein catabolic process is_a: GO:1904350 ! regulation of protein catabolic process in the vacuole intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007039 ! protein catabolic process in the vacuole -relationship: positively_regulates GO:0007039 ! protein catabolic process in the vacuole +intersection_of: RO:0002213 GO:0007039 ! positively regulates protein catabolic process in the vacuole +relationship: RO:0002213 GO:0007039 ! positively regulates protein catabolic process in the vacuole created_by: rl creation_date: 2015-06-12T09:10:49Z @@ -131372,8 +130866,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of calcitonin secretion." [GO_REF:0000058, GOC:TermGenie, PMID:11278900] is_a: GO:0090276 ! regulation of peptide hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0036161 ! calcitonin secretion -relationship: regulates GO:0036161 ! calcitonin secretion +intersection_of: RO:0002211 GO:0036161 ! regulates (processual) calcitonin secretion +relationship: RO:0002211 GO:0036161 ! regulates (processual) calcitonin secretion created_by: sl creation_date: 2015-06-15T17:54:52Z @@ -131389,8 +130883,8 @@ synonym: "inhibition of calcitonin secretion" NARROW [GOC:TermGenie] is_a: GO:0090278 ! negative regulation of peptide hormone secretion is_a: GO:1904362 ! regulation of calcitonin secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0036161 ! calcitonin secretion -relationship: negatively_regulates GO:0036161 ! calcitonin secretion +intersection_of: RO:0002212 GO:0036161 ! negatively regulates calcitonin secretion +relationship: RO:0002212 GO:0036161 ! negatively regulates calcitonin secretion created_by: sl creation_date: 2015-06-15T17:54:58Z @@ -131406,8 +130900,8 @@ synonym: "upregulation of calcitonin secretion" EXACT [GOC:TermGenie] is_a: GO:0090277 ! positive regulation of peptide hormone secretion is_a: GO:1904362 ! regulation of calcitonin secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0036161 ! calcitonin secretion -relationship: positively_regulates GO:0036161 ! calcitonin secretion +intersection_of: RO:0002213 GO:0036161 ! positively regulates calcitonin secretion +relationship: RO:0002213 GO:0036161 ! positively regulates calcitonin secretion created_by: sl creation_date: 2015-06-15T17:55:05Z @@ -131418,8 +130912,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of protein localization to cell periphery." [GO_REF:0000058, GOC:TermGenie, PMID:18216290] is_a: GO:0032880 ! regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990778 ! protein localization to cell periphery -relationship: regulates GO:1990778 ! protein localization to cell periphery +intersection_of: RO:0002211 GO:1990778 ! regulates (processual) protein localization to cell periphery +relationship: RO:0002211 GO:1990778 ! regulates (processual) protein localization to cell periphery created_by: sl creation_date: 2015-06-22T22:09:25Z @@ -131435,8 +130929,8 @@ synonym: "inhibition of protein localization to cell periphery" NARROW [GOC:Term is_a: GO:1903828 ! negative regulation of protein localization is_a: GO:1904375 ! regulation of protein localization to cell periphery intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990778 ! protein localization to cell periphery -relationship: negatively_regulates GO:1990778 ! protein localization to cell periphery +intersection_of: RO:0002212 GO:1990778 ! negatively regulates protein localization to cell periphery +relationship: RO:0002212 GO:1990778 ! negatively regulates protein localization to cell periphery created_by: sl creation_date: 2015-06-22T22:09:32Z @@ -131452,8 +130946,8 @@ synonym: "upregulation of protein localization to cell periphery" EXACT [GOC:Ter is_a: GO:1903829 ! positive regulation of protein localization is_a: GO:1904375 ! regulation of protein localization to cell periphery intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990778 ! protein localization to cell periphery -relationship: positively_regulates GO:1990778 ! protein localization to cell periphery +intersection_of: RO:0002213 GO:1990778 ! positively regulates protein localization to cell periphery +relationship: RO:0002213 GO:1990778 ! positively regulates protein localization to cell periphery created_by: sl creation_date: 2015-06-22T22:09:37Z @@ -131462,10 +130956,10 @@ id: GO:1904386 name: response to L-phenylalanine derivative namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-phenylalanine derivative stimulus." [GO_REF:0000071, GOC:TermGenie, PMID:12112407] -is_a: GO:0010243 ! response to organonitrogen compound +is_a: GO:1901698 ! response to nitrogen compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:84144 ! L-phenylalanine derivative -relationship: has_primary_input CHEBI:84144 ! L-phenylalanine derivative +intersection_of: RO:0004009 CHEBI:84144 ! has primary input L-phenylalanine derivative +relationship: RO:0004009 CHEBI:84144 ! has primary input L-phenylalanine derivative created_by: sl creation_date: 2015-06-23T17:56:19Z @@ -131474,11 +130968,11 @@ id: GO:1904387 name: cellular response to L-phenylalanine derivative namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-phenylalanine derivative stimulus." [GO_REF:0000071, GOC:TermGenie, PMID:12112407] -is_a: GO:0071417 ! cellular response to organonitrogen compound +is_a: GO:1901699 ! cellular response to nitrogen compound is_a: GO:1904386 ! response to L-phenylalanine derivative intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:84144 ! L-phenylalanine derivative -relationship: has_primary_input CHEBI:84144 ! L-phenylalanine derivative +intersection_of: RO:0004009 CHEBI:84144 ! has primary input L-phenylalanine derivative +relationship: RO:0004009 CHEBI:84144 ! has primary input L-phenylalanine derivative created_by: sl creation_date: 2015-06-23T17:56:25Z @@ -131491,8 +130985,8 @@ synonym: "cone bipolar cell differentiation" EXACT [PMID:14745032] synonym: "retinal cone bipolar cell differentiation" EXACT [] is_a: GO:0060040 ! retinal bipolar neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000752 ! cone retinal bipolar cell -relationship: results_in_acquisition_of_features_of CL:0000752 ! cone retinal bipolar cell +intersection_of: RO:0002315 CL:0000752 ! results in acquisition of features of cone retinal bipolar cell +relationship: RO:0002315 CL:0000752 ! results in acquisition of features of cone retinal bipolar cell created_by: sl creation_date: 2015-06-23T19:01:16Z @@ -131506,8 +131000,8 @@ synonym: "regulation of neuromuscular junction stability" RELATED [GOC:TermGenie synonym: "regulation of NMJ stability" RELATED [GOC:TermGenie] is_a: GO:0050807 ! regulation of synapse organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007528 ! neuromuscular junction development -relationship: regulates GO:0007528 ! neuromuscular junction development +intersection_of: RO:0002211 GO:0007528 ! regulates (processual) neuromuscular junction development +relationship: RO:0002211 GO:0007528 ! regulates (processual) neuromuscular junction development created_by: sl creation_date: 2015-06-23T19:23:42Z @@ -131538,8 +131032,8 @@ synonym: "negative regulation of NMJ stability" RELATED [GOC:TermGenie] is_a: GO:1904396 ! regulation of neuromuscular junction development is_a: GO:1905809 ! negative regulation of synapse organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007528 ! neuromuscular junction development -relationship: negatively_regulates GO:0007528 ! neuromuscular junction development +intersection_of: RO:0002212 GO:0007528 ! negatively regulates neuromuscular junction development +relationship: RO:0002212 GO:0007528 ! negatively regulates neuromuscular junction development created_by: sl creation_date: 2015-06-23T19:23:48Z @@ -131570,8 +131064,8 @@ synonym: "upregulation of NMJ stability" RELATED [GOC:TermGenie] is_a: GO:0051130 ! positive regulation of cellular component organization is_a: GO:1904396 ! regulation of neuromuscular junction development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007528 ! neuromuscular junction development -relationship: positively_regulates GO:0007528 ! neuromuscular junction development +intersection_of: RO:0002213 GO:0007528 ! positively regulates neuromuscular junction development +relationship: RO:0002213 GO:0007528 ! positively regulates neuromuscular junction development created_by: sl creation_date: 2015-06-23T19:23:54Z @@ -131583,8 +131077,8 @@ def: "Binding to melatonin." [GO_REF:0000067, GOC:mr, GOC:TermGenie, PMID:103799 is_a: GO:0033218 ! amide binding is_a: GO:0097159 ! organic cyclic compound binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:16796 ! melatonin -relationship: has_primary_input CHEBI:16796 ! melatonin +intersection_of: RO:0004009 CHEBI:16796 ! has primary input melatonin +relationship: RO:0004009 CHEBI:16796 ! has primary input melatonin created_by: mr creation_date: 2015-06-25T19:19:53Z @@ -131597,8 +131091,8 @@ synonym: "regulation of secretory granule organisation" EXACT [GOC:TermGenie] synonym: "regulation of secretory granule organization and biogenesis" RELATED [GOC:TermGenie] is_a: GO:0033043 ! regulation of organelle organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0033363 ! secretory granule organization -relationship: regulates GO:0033363 ! secretory granule organization +intersection_of: RO:0002211 GO:0033363 ! regulates (processual) secretory granule organization +relationship: RO:0002211 GO:0033363 ! regulates (processual) secretory granule organization created_by: sl creation_date: 2015-06-25T19:40:42Z @@ -131624,8 +131118,8 @@ synonym: "negative regulation of secretory granule organization and biogenesis" is_a: GO:0010639 ! negative regulation of organelle organization is_a: GO:1904409 ! regulation of secretory granule organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0033363 ! secretory granule organization -relationship: negatively_regulates GO:0033363 ! secretory granule organization +intersection_of: RO:0002212 GO:0033363 ! negatively regulates secretory granule organization +relationship: RO:0002212 GO:0033363 ! negatively regulates secretory granule organization created_by: sl creation_date: 2015-06-25T19:40:49Z @@ -131651,8 +131145,8 @@ synonym: "upregulation of secretory granule organization and biogenesis" RELATED is_a: GO:0010638 ! positive regulation of organelle organization is_a: GO:1904409 ! regulation of secretory granule organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0033363 ! secretory granule organization -relationship: positively_regulates GO:0033363 ! secretory granule organization +intersection_of: RO:0002213 GO:0033363 ! positively regulates secretory granule organization +relationship: RO:0002213 GO:0033363 ! positively regulates secretory granule organization created_by: sl creation_date: 2015-06-25T19:40:55Z @@ -131663,8 +131157,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cardiac ventricle development." [GO_REF:0000058, GOC:TermGenie, PMID:19590510] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003231 ! cardiac ventricle development -relationship: regulates GO:0003231 ! cardiac ventricle development +intersection_of: RO:0002211 GO:0003231 ! regulates (processual) cardiac ventricle development +relationship: RO:0002211 GO:0003231 ! regulates (processual) cardiac ventricle development created_by: sl creation_date: 2015-06-25T19:52:15Z @@ -131681,9 +131175,9 @@ is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1904412 ! regulation of cardiac ventricle development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003231 ! cardiac ventricle development -relationship: negatively_regulates GO:0003231 ! cardiac ventricle development -relationship: negatively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002212 GO:0003231 ! negatively regulates cardiac ventricle development +relationship: RO:0002212 GO:0003231 ! negatively regulates cardiac ventricle development +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process created_by: sl creation_date: 2015-06-25T19:52:21Z @@ -131700,9 +131194,9 @@ is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1904412 ! regulation of cardiac ventricle development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003231 ! cardiac ventricle development -relationship: positively_regulates GO:0003231 ! cardiac ventricle development -relationship: positively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002213 GO:0003231 ! positively regulates cardiac ventricle development +relationship: RO:0002213 GO:0003231 ! positively regulates cardiac ventricle development +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process created_by: sl creation_date: 2015-06-25T19:52:27Z @@ -131729,8 +131223,8 @@ is_a: GO:0051928 ! positive regulation of calcium ion transport is_a: GO:1903169 ! regulation of calcium ion transmembrane transport is_a: GO:1904064 ! positive regulation of cation transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0070588 ! calcium ion transmembrane transport -relationship: positively_regulates GO:0070588 ! calcium ion transmembrane transport +intersection_of: RO:0002213 GO:0070588 ! positively regulates calcium ion transmembrane transport +relationship: RO:0002213 GO:0070588 ! positively regulates calcium ion transmembrane transport created_by: sl creation_date: 2015-07-02T20:44:25Z @@ -131746,9 +131240,9 @@ synonym: "regulation of ferrous iron import into cell" RELATED [] is_a: GO:0034759 ! regulation of iron ion transmembrane transport is_a: GO:0060341 ! regulation of cellular localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0098711 ! iron ion import across plasma membrane -relationship: regulates GO:0051641 ! cellular localization -relationship: regulates GO:0098711 ! iron ion import across plasma membrane +intersection_of: RO:0002211 GO:0098711 ! regulates (processual) iron ion import across plasma membrane +relationship: RO:0002211 GO:0051641 ! regulates (processual) cellular localization +relationship: RO:0002211 GO:0098711 ! regulates (processual) iron ion import across plasma membrane created_by: rl creation_date: 2015-03-04T14:37:36Z @@ -131772,8 +131266,8 @@ synonym: "negative regulation of ferrous iron import into cell" RELATED [] is_a: GO:0034760 ! negative regulation of iron ion transmembrane transport is_a: GO:1904438 ! regulation of iron ion import across plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0098711 ! iron ion import across plasma membrane -relationship: negatively_regulates GO:0098711 ! iron ion import across plasma membrane +intersection_of: RO:0002212 GO:0098711 ! negatively regulates iron ion import across plasma membrane +relationship: RO:0002212 GO:0098711 ! negatively regulates iron ion import across plasma membrane created_by: rl creation_date: 2015-07-06T13:49:58Z @@ -131797,8 +131291,8 @@ synonym: "upregulation of ferrous iron import across plasma membrane" RELATED [G is_a: GO:0034761 ! positive regulation of iron ion transmembrane transport is_a: GO:1904438 ! regulation of iron ion import across plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0098711 ! iron ion import across plasma membrane -relationship: positively_regulates GO:0098711 ! iron ion import across plasma membrane +intersection_of: RO:0002213 GO:0098711 ! positively regulates iron ion import across plasma membrane +relationship: RO:0002213 GO:0098711 ! positively regulates iron ion import across plasma membrane created_by: rl creation_date: 2015-07-06T13:50:04Z @@ -131820,9 +131314,9 @@ is_a: GO:0045759 ! negative regulation of action potential is_a: GO:0051970 ! negative regulation of transmission of nerve impulse is_a: GO:0098908 ! regulation of neuronal action potential intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0019228 ! neuronal action potential -relationship: negatively_regulates GO:0019226 ! transmission of nerve impulse -relationship: negatively_regulates GO:0019228 ! neuronal action potential +intersection_of: RO:0002212 GO:0019228 ! negatively regulates neuronal action potential +relationship: RO:0002212 GO:0019226 ! negatively regulates transmission of nerve impulse +relationship: RO:0002212 GO:0019228 ! negatively regulates neuronal action potential created_by: sl creation_date: 2015-07-09T18:02:40Z @@ -131844,9 +131338,9 @@ is_a: GO:0045760 ! positive regulation of action potential is_a: GO:0051971 ! positive regulation of transmission of nerve impulse is_a: GO:0098908 ! regulation of neuronal action potential intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0019228 ! neuronal action potential -relationship: positively_regulates GO:0019226 ! transmission of nerve impulse -relationship: positively_regulates GO:0019228 ! neuronal action potential +intersection_of: RO:0002213 GO:0019228 ! positively regulates neuronal action potential +relationship: RO:0002213 GO:0019226 ! positively regulates transmission of nerve impulse +relationship: RO:0002213 GO:0019228 ! positively regulates neuronal action potential created_by: sl creation_date: 2015-07-09T18:02:46Z @@ -131857,8 +131351,8 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a cloacal gland over time, from its formation to the mature structure." [GO_REF:0000094, GOC:mr, GOC:TermGenie, PMID:18805421] is_a: GO:0048732 ! gland development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0012478 ! cloacal gland -relationship: results_in_development_of UBERON:0012478 ! cloacal gland +intersection_of: RO:0002296 UBERON:0012478 ! results in development of cloacal gland +relationship: RO:0002296 UBERON:0012478 ! results in development of cloacal gland created_by: mr creation_date: 2015-07-15T22:14:39Z @@ -131872,8 +131366,8 @@ synonym: "protein localisation to ciliary transition zone" EXACT [GOC:TermGenie] synonym: "protein localization in ciliary transition zone" EXACT [GOC:TermGenie] is_a: GO:0061512 ! protein localization to cilium intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0035869 ! ciliary transition zone -relationship: has_target_end_location GO:0035869 ! ciliary transition zone +intersection_of: RO:0002339 GO:0035869 ! has target end location ciliary transition zone +relationship: RO:0002339 GO:0035869 ! has target end location ciliary transition zone created_by: kmv creation_date: 2015-07-17T20:43:21Z @@ -131887,8 +131381,8 @@ synonym: "regulation of microtubule severing activity" RELATED [GOC:TermGenie] synonym: "regulation of microtubule/chromatin interaction" RELATED [GOC:TermGenie] is_a: GO:0043393 ! regulation of protein binding intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008017 ! microtubule binding -relationship: regulates GO:0008017 ! microtubule binding +intersection_of: RO:0002211 GO:0008017 ! regulates (processual) microtubule binding +relationship: RO:0002211 GO:0008017 ! regulates (processual) microtubule binding created_by: als creation_date: 2015-07-30T10:32:13Z @@ -131915,8 +131409,8 @@ synonym: "negative regulation of microtubule/chromatin interaction" RELATED [GOC is_a: GO:0032091 ! negative regulation of protein binding is_a: GO:1904526 ! regulation of microtubule binding intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008017 ! microtubule binding -relationship: negatively_regulates GO:0008017 ! microtubule binding +intersection_of: RO:0002212 GO:0008017 ! negatively regulates microtubule binding +relationship: RO:0002212 GO:0008017 ! negatively regulates microtubule binding created_by: als creation_date: 2015-07-30T10:32:29Z @@ -131943,8 +131437,8 @@ synonym: "upregulation of microtubule/chromatin interaction" RELATED [GOC:TermGe is_a: GO:0032092 ! positive regulation of protein binding is_a: GO:1904526 ! regulation of microtubule binding intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008017 ! microtubule binding -relationship: positively_regulates GO:0008017 ! microtubule binding +intersection_of: RO:0002213 GO:0008017 ! positively regulates microtubule binding +relationship: RO:0002213 GO:0008017 ! positively regulates microtubule binding created_by: als creation_date: 2015-07-30T10:32:36Z @@ -131956,8 +131450,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to glycoproteins" EXACT [] is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:17089 ! glycoprotein -relationship: has_primary_input CHEBI:17089 ! glycoprotein +intersection_of: RO:0004009 CHEBI:17089 ! has primary input glycoprotein +relationship: RO:0004009 CHEBI:17089 ! has primary input glycoprotein created_by: sl creation_date: 2015-08-20T16:46:24Z @@ -131970,8 +131464,8 @@ synonym: "cellular response to glycoproteins" EXACT [] is_a: GO:1901701 ! cellular response to oxygen-containing compound is_a: GO:1904587 ! response to glycoprotein intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:17089 ! glycoprotein -relationship: has_primary_input CHEBI:17089 ! glycoprotein +intersection_of: RO:0004009 CHEBI:17089 ! has primary input glycoprotein +relationship: RO:0004009 CHEBI:17089 ! has primary input glycoprotein created_by: sl creation_date: 2015-08-20T16:46:30Z @@ -131987,8 +131481,8 @@ synonym: "adipose cell apoptotic process" EXACT [GOC:TermGenie] synonym: "fat cell apoptosis" NARROW [GOC:TermGenie] is_a: GO:0006915 ! apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000136 ! adipocyte -relationship: occurs_in CL:0000136 ! adipocyte +intersection_of: BFO:0000066 CL:0000136 ! occurs in adipocyte +relationship: BFO:0000066 CL:0000136 ! occurs in adipocyte created_by: sl creation_date: 2015-08-27T18:13:06Z @@ -132004,8 +131498,8 @@ synonym: "regulation of glomerular visceral epithelial cell apoptotic process" E synonym: "regulation of podocyte apoptosis" NARROW [GOC:TermGenie] is_a: GO:1904035 ! regulation of epithelial cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1903210 ! podocyte apoptotic process -relationship: regulates GO:1903210 ! podocyte apoptotic process +intersection_of: RO:0002211 GO:1903210 ! regulates (processual) podocyte apoptotic process +relationship: RO:0002211 GO:1903210 ! regulates (processual) podocyte apoptotic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23000" xsd:anyURI created_by: sl creation_date: 2015-08-28T14:14:44Z @@ -132047,8 +131541,8 @@ synonym: "negative regulation of podocyte apoptosis" EXACT [GOC:TermGenie] is_a: GO:1904036 ! negative regulation of epithelial cell apoptotic process is_a: GO:1904633 ! regulation of podocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1903210 ! podocyte apoptotic process -relationship: negatively_regulates GO:1903210 ! podocyte apoptotic process +intersection_of: RO:0002212 GO:1903210 ! negatively regulates podocyte apoptotic process +relationship: RO:0002212 GO:1903210 ! negatively regulates podocyte apoptotic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23000" xsd:anyURI created_by: sl creation_date: 2015-08-28T14:14:50Z @@ -132090,8 +131584,8 @@ synonym: "upregulation of podocyte apoptotic process" EXACT [GOC:TermGenie] is_a: GO:1904037 ! positive regulation of epithelial cell apoptotic process is_a: GO:1904633 ! regulation of podocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1903210 ! podocyte apoptotic process -relationship: positively_regulates GO:1903210 ! podocyte apoptotic process +intersection_of: RO:0002213 GO:1903210 ! positively regulates podocyte apoptotic process +relationship: RO:0002213 GO:1903210 ! positively regulates podocyte apoptotic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23000" xsd:anyURI created_by: sl creation_date: 2015-08-28T14:14:56Z @@ -132108,8 +131602,8 @@ synonym: "regulation of adipose cell apoptotic process" EXACT [GOC:TermGenie] synonym: "regulation of fat cell apoptosis" NARROW [GOC:TermGenie] is_a: GO:0042981 ! regulation of apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1904606 ! fat cell apoptotic process -relationship: regulates GO:1904606 ! fat cell apoptotic process +intersection_of: RO:0002211 GO:1904606 ! regulates (processual) fat cell apoptotic process +relationship: RO:0002211 GO:1904606 ! regulates (processual) fat cell apoptotic process created_by: sl creation_date: 2015-08-31T20:59:28Z @@ -132150,8 +131644,8 @@ synonym: "negative regulation of fat cell apoptosis" NARROW [GOC:TermGenie] is_a: GO:0043066 ! negative regulation of apoptotic process is_a: GO:1904649 ! regulation of fat cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1904606 ! fat cell apoptotic process -relationship: negatively_regulates GO:1904606 ! fat cell apoptotic process +intersection_of: RO:0002212 GO:1904606 ! negatively regulates fat cell apoptotic process +relationship: RO:0002212 GO:1904606 ! negatively regulates fat cell apoptotic process created_by: sl creation_date: 2015-08-31T20:59:34Z @@ -132192,8 +131686,8 @@ synonym: "upregulation of fat cell apoptotic process" EXACT [GOC:TermGenie] is_a: GO:0043065 ! positive regulation of apoptotic process is_a: GO:1904649 ! regulation of fat cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1904606 ! fat cell apoptotic process -relationship: positively_regulates GO:1904606 ! fat cell apoptotic process +intersection_of: RO:0002213 GO:1904606 ! positively regulates fat cell apoptotic process +relationship: RO:0002213 GO:1904606 ! positively regulates fat cell apoptotic process created_by: sl creation_date: 2015-08-31T20:59:40Z @@ -132206,8 +131700,8 @@ synonym: "regulation of alveolarization" EXACT [GOC:TermGenie] synonym: "regulation of alveologenesis" EXACT [GOC:TermGenie] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048286 ! lung alveolus development -relationship: regulates GO:0048286 ! lung alveolus development +intersection_of: RO:0002211 GO:0048286 ! regulates (processual) lung alveolus development +relationship: RO:0002211 GO:0048286 ! regulates (processual) lung alveolus development created_by: sl creation_date: 2015-09-03T22:44:44Z @@ -132234,9 +131728,9 @@ is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1904653 ! regulation of lung alveolus development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048286 ! lung alveolus development -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0048286 ! lung alveolus development +intersection_of: RO:0002212 GO:0048286 ! negatively regulates lung alveolus development +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0048286 ! negatively regulates lung alveolus development created_by: sl creation_date: 2015-09-03T22:44:50Z @@ -132263,25 +131757,26 @@ is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1904653 ! regulation of lung alveolus development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048286 ! lung alveolus development -relationship: positively_regulates GO:0032501 ! multicellular organismal process -relationship: positively_regulates GO:0048286 ! lung alveolus development +intersection_of: RO:0002213 GO:0048286 ! positively regulates lung alveolus development +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process +relationship: RO:0002213 GO:0048286 ! positively regulates lung alveolus development created_by: sl creation_date: 2015-09-03T22:44:56Z [Term] id: GO:1904659 -name: glucose transmembrane transport +name: D-glucose transmembrane transport namespace: biological_process alt_id: GO:0015758 -def: "The process in which glucose is transported across a membrane." [GO_REF:0000069, GOC:TermGenie, PMID:9090050] +def: "The process in which D-glucose is transported across a membrane." [GO_REF:0000069, GOC:TermGenie, PMID:9090050] +synonym: "glucose transmembrane transport" EXACT [] synonym: "glucose transport" RELATED [] is_a: GO:0008645 ! hexose transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:4167 ! D-glucopyranose -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:4167 ! D-glucopyranose -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:4167 ! has primary input D-glucopyranose +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:4167 ! has primary input D-glucopyranose created_by: vw creation_date: 2015-09-04T17:20:16Z @@ -132313,8 +131808,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of somatic stem cell population maintenance." [GO_REF:0000058, GOC:BHF, GOC:BHF_miRNA, GOC:rph, GOC:TermGenie, PMID:19409607] is_a: GO:2000036 ! regulation of stem cell population maintenance intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035019 ! somatic stem cell population maintenance -relationship: regulates GO:0035019 ! somatic stem cell population maintenance +intersection_of: RO:0002211 GO:0035019 ! regulates (processual) somatic stem cell population maintenance +relationship: RO:0002211 GO:0035019 ! regulates (processual) somatic stem cell population maintenance created_by: rph creation_date: 2015-09-14T08:40:19Z @@ -132330,8 +131825,8 @@ synonym: "inhibition of somatic stem cell population maintenance" NARROW [GOC:Te is_a: GO:1902455 ! negative regulation of stem cell population maintenance is_a: GO:1904672 ! regulation of somatic stem cell population maintenance intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035019 ! somatic stem cell population maintenance -relationship: negatively_regulates GO:0035019 ! somatic stem cell population maintenance +intersection_of: RO:0002212 GO:0035019 ! negatively regulates somatic stem cell population maintenance +relationship: RO:0002212 GO:0035019 ! negatively regulates somatic stem cell population maintenance created_by: rph creation_date: 2015-09-14T08:40:25Z @@ -132347,8 +131842,8 @@ synonym: "upregulation of somatic stem cell population maintenance" EXACT [GOC:T is_a: GO:1902459 ! positive regulation of stem cell population maintenance is_a: GO:1904672 ! regulation of somatic stem cell population maintenance intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035019 ! somatic stem cell population maintenance -relationship: positively_regulates GO:0035019 ! somatic stem cell population maintenance +intersection_of: RO:0002213 GO:0035019 ! positively regulates somatic stem cell population maintenance +relationship: RO:0002213 GO:0035019 ! positively regulates somatic stem cell population maintenance created_by: rph creation_date: 2015-09-14T08:40:32Z @@ -132360,8 +131855,8 @@ def: "Any process that modulates the frequency, rate or extent of somatic stem c synonym: "regulation of somatic stem cell renewal" EXACT [GOC:TermGenie] is_a: GO:2000035 ! regulation of stem cell division intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048103 ! somatic stem cell division -relationship: regulates GO:0048103 ! somatic stem cell division +intersection_of: RO:0002211 GO:0048103 ! regulates (processual) somatic stem cell division +relationship: RO:0002211 GO:0048103 ! regulates (processual) somatic stem cell division created_by: rph creation_date: 2015-09-14T08:47:22Z @@ -132382,8 +131877,8 @@ synonym: "negative regulation of somatic stem cell renewal" EXACT [GOC:TermGenie is_a: GO:0051782 ! negative regulation of cell division is_a: GO:1904675 ! regulation of somatic stem cell division intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048103 ! somatic stem cell division -relationship: negatively_regulates GO:0048103 ! somatic stem cell division +intersection_of: RO:0002212 GO:0048103 ! negatively regulates somatic stem cell division +relationship: RO:0002212 GO:0048103 ! negatively regulates somatic stem cell division created_by: rph creation_date: 2015-09-14T08:47:28Z @@ -132404,8 +131899,8 @@ synonym: "upregulation of somatic stem cell renewal" EXACT [GOC:TermGenie] is_a: GO:0051781 ! positive regulation of cell division is_a: GO:1904675 ! regulation of somatic stem cell division intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048103 ! somatic stem cell division -relationship: positively_regulates GO:0048103 ! somatic stem cell division +intersection_of: RO:0002213 GO:0048103 ! positively regulates somatic stem cell division +relationship: RO:0002213 GO:0048103 ! positively regulates somatic stem cell division created_by: rph creation_date: 2015-09-14T08:47:34Z @@ -132421,10 +131916,10 @@ synonym: "peptide uptake permease activity" RELATED [] xref: Reactome:R-HSA-1500817 "Glutathione is taken up by the bacterium" is_a: GO:0022857 ! transmembrane transporter activity intersection_of: GO:0005215 ! transporter activity -intersection_of: has_primary_input CHEBI:60466 ! peptide zwitterion -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:60466 ! peptide zwitterion -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:60466 ! has primary input peptide zwitterion +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:60466 ! has primary input peptide zwitterion created_by: tb creation_date: 2015-09-22T18:50:41Z @@ -132436,9 +131931,9 @@ def: "Any process that modulates the frequency, rate or extent of cytoplasmic tr is_a: GO:0006446 ! regulation of translational initiation is_a: GO:2000765 ! regulation of cytoplasmic translation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002183 ! cytoplasmic translational initiation -relationship: regulates GO:0002181 ! cytoplasmic translation -relationship: regulates GO:0002183 ! cytoplasmic translational initiation +intersection_of: RO:0002211 GO:0002183 ! regulates (processual) cytoplasmic translational initiation +relationship: RO:0002211 GO:0002181 ! regulates (processual) cytoplasmic translation +relationship: RO:0002211 GO:0002183 ! regulates (processual) cytoplasmic translational initiation property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/21560" xsd:anyURI created_by: dos creation_date: 2015-09-25T14:39:38Z @@ -132455,8 +131950,8 @@ synonym: "inhibition of cytoplasmic translational initiation" NARROW [GOC:TermGe is_a: GO:0045947 ! negative regulation of translational initiation is_a: GO:1904688 ! regulation of cytoplasmic translational initiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002183 ! cytoplasmic translational initiation -relationship: negatively_regulates GO:0002183 ! cytoplasmic translational initiation +intersection_of: RO:0002212 GO:0002183 ! negatively regulates cytoplasmic translational initiation +relationship: RO:0002212 GO:0002183 ! negatively regulates cytoplasmic translational initiation created_by: dos creation_date: 2015-09-25T14:39:44Z @@ -132472,8 +131967,8 @@ synonym: "upregulation of cytoplasmic translational initiation" EXACT [GOC:TermG is_a: GO:0045948 ! positive regulation of translational initiation is_a: GO:1904688 ! regulation of cytoplasmic translational initiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002183 ! cytoplasmic translational initiation -relationship: positively_regulates GO:0002183 ! cytoplasmic translational initiation +intersection_of: RO:0002213 GO:0002183 ! positively regulates cytoplasmic translational initiation +relationship: RO:0002213 GO:0002183 ! positively regulates cytoplasmic translational initiation created_by: dos creation_date: 2015-09-25T14:39:50Z @@ -132499,8 +131994,8 @@ synonym: "negative regulation of pancreatic beta cell proliferation" EXACT [GOC: is_a: GO:0050680 ! negative regulation of epithelial cell proliferation is_a: GO:0061469 ! regulation of type B pancreatic cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0044342 ! type B pancreatic cell proliferation -relationship: negatively_regulates GO:0044342 ! type B pancreatic cell proliferation +intersection_of: RO:0002212 GO:0044342 ! negatively regulates type B pancreatic cell proliferation +relationship: RO:0002212 GO:0044342 ! negatively regulates type B pancreatic cell proliferation created_by: sl creation_date: 2015-09-25T15:23:38Z @@ -132526,8 +132021,8 @@ synonym: "upregulation of type B pancreatic cell proliferation" EXACT [GOC:TermG is_a: GO:0050679 ! positive regulation of epithelial cell proliferation is_a: GO:0061469 ! regulation of type B pancreatic cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0044342 ! type B pancreatic cell proliferation -relationship: positively_regulates GO:0044342 ! type B pancreatic cell proliferation +intersection_of: RO:0002213 GO:0044342 ! positively regulates type B pancreatic cell proliferation +relationship: RO:0002213 GO:0044342 ! positively regulates type B pancreatic cell proliferation created_by: sl creation_date: 2015-09-25T15:23:44Z @@ -132540,10 +132035,10 @@ synonym: "MB morphogenesis" BROAD [GOC:TermGenie] synonym: "mesencephalon morphogenesis" RELATED [GOC:TermGenie] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0001891 ! midbrain +intersection_of: RO:0002298 UBERON:0001891 ! results in morphogenesis of midbrain relationship: part_of GO:0030901 ! midbrain development relationship: part_of GO:0048854 ! brain morphogenesis -relationship: results_in_morphogenesis_of UBERON:0001891 ! midbrain +relationship: RO:0002298 UBERON:0001891 ! results in morphogenesis of midbrain created_by: bf creation_date: 2015-09-29T09:15:28Z @@ -132556,8 +132051,8 @@ synonym: "regulation of acinic cell proliferation" EXACT [GOC:TermGenie] synonym: "regulation of acinous cell proliferation" EXACT [GOC:TermGenie] is_a: GO:0050678 ! regulation of epithelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990863 ! acinar cell proliferation -relationship: regulates GO:1990863 ! acinar cell proliferation +intersection_of: RO:0002211 GO:1990863 ! regulates (processual) acinar cell proliferation +relationship: RO:0002211 GO:1990863 ! regulates (processual) acinar cell proliferation created_by: sl creation_date: 2015-09-30T15:19:50Z @@ -132583,8 +132078,8 @@ synonym: "negative regulation of acinous cell proliferation" EXACT [GOC:TermGeni is_a: GO:0050680 ! negative regulation of epithelial cell proliferation is_a: GO:1904697 ! regulation of acinar cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990863 ! acinar cell proliferation -relationship: negatively_regulates GO:1990863 ! acinar cell proliferation +intersection_of: RO:0002212 GO:1990863 ! negatively regulates acinar cell proliferation +relationship: RO:0002212 GO:1990863 ! negatively regulates acinar cell proliferation created_by: sl creation_date: 2015-09-30T15:19:57Z @@ -132610,8 +132105,8 @@ synonym: "upregulation of acinous cell proliferation" EXACT [GOC:TermGenie] is_a: GO:0050679 ! positive regulation of epithelial cell proliferation is_a: GO:1904697 ! regulation of acinar cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990863 ! acinar cell proliferation -relationship: positively_regulates GO:1990863 ! acinar cell proliferation +intersection_of: RO:0002213 GO:1990863 ! positively regulates acinar cell proliferation +relationship: RO:0002213 GO:1990863 ! positively regulates acinar cell proliferation created_by: sl creation_date: 2015-09-30T15:20:03Z @@ -132625,8 +132120,8 @@ synonym: "granulosa cell of ovary apoptosis" NARROW [GOC:TermGenie] synonym: "granulosa cell of ovary apoptotic process" EXACT [GOC:TermGenie] is_a: GO:1904019 ! epithelial cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000501 ! granulosa cell -relationship: occurs_in CL:0000501 ! granulosa cell +intersection_of: BFO:0000066 CL:0000501 ! occurs in granulosa cell +relationship: BFO:0000066 CL:0000501 ! occurs in granulosa cell created_by: sl creation_date: 2015-09-30T21:29:54Z @@ -132639,8 +132134,8 @@ synonym: "regulation of vascular smooth muscle cell proliferation" EXACT [] synonym: "regulation of VSMC proliferation" EXACT [GOC:TermGenie] is_a: GO:0048660 ! regulation of smooth muscle cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990874 ! vascular associated smooth muscle cell proliferation -relationship: regulates GO:1990874 ! vascular associated smooth muscle cell proliferation +intersection_of: RO:0002211 GO:1990874 ! regulates (processual) vascular associated smooth muscle cell proliferation +relationship: RO:0002211 GO:1990874 ! regulates (processual) vascular associated smooth muscle cell proliferation created_by: sl creation_date: 2015-10-01T16:05:20Z @@ -132662,8 +132157,8 @@ synonym: "negative regulation of VSMC proliferation" EXACT [GOC:TermGenie] is_a: GO:0048662 ! negative regulation of smooth muscle cell proliferation is_a: GO:1904705 ! regulation of vascular associated smooth muscle cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990874 ! vascular associated smooth muscle cell proliferation -relationship: negatively_regulates GO:1990874 ! vascular associated smooth muscle cell proliferation +intersection_of: RO:0002212 GO:1990874 ! negatively regulates vascular associated smooth muscle cell proliferation +relationship: RO:0002212 GO:1990874 ! negatively regulates vascular associated smooth muscle cell proliferation created_by: sl creation_date: 2015-10-01T16:05:26Z @@ -132685,8 +132180,8 @@ synonym: "upregulation of VSMC proliferation" EXACT [GOC:TermGenie] is_a: GO:0048661 ! positive regulation of smooth muscle cell proliferation is_a: GO:1904705 ! regulation of vascular associated smooth muscle cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990874 ! vascular associated smooth muscle cell proliferation -relationship: positively_regulates GO:1990874 ! vascular associated smooth muscle cell proliferation +intersection_of: RO:0002213 GO:1990874 ! positively regulates vascular associated smooth muscle cell proliferation +relationship: RO:0002213 GO:1990874 ! positively regulates vascular associated smooth muscle cell proliferation created_by: sl creation_date: 2015-10-01T16:05:32Z @@ -132700,8 +132195,8 @@ synonym: "regulation of granulosa cell of ovary apoptosis" NARROW [GOC:TermGenie synonym: "regulation of granulosa cell of ovary apoptotic process" EXACT [GOC:TermGenie] is_a: GO:1904035 ! regulation of epithelial cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1904700 ! granulosa cell apoptotic process -relationship: regulates GO:1904700 ! granulosa cell apoptotic process +intersection_of: RO:0002211 GO:1904700 ! regulates (processual) granulosa cell apoptotic process +relationship: RO:0002211 GO:1904700 ! regulates (processual) granulosa cell apoptotic process created_by: sl creation_date: 2015-10-01T16:09:38Z @@ -132732,8 +132227,8 @@ synonym: "negative regulation of granulosa cell of ovary apoptotic process" EXAC is_a: GO:1904036 ! negative regulation of epithelial cell apoptotic process is_a: GO:1904708 ! regulation of granulosa cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1904700 ! granulosa cell apoptotic process -relationship: negatively_regulates GO:1904700 ! granulosa cell apoptotic process +intersection_of: RO:0002212 GO:1904700 ! negatively regulates granulosa cell apoptotic process +relationship: RO:0002212 GO:1904700 ! negatively regulates granulosa cell apoptotic process created_by: sl creation_date: 2015-10-01T16:09:45Z @@ -132764,8 +132259,8 @@ synonym: "upregulation of granulosa cell of ovary apoptotic process" EXACT [GOC: is_a: GO:1904037 ! positive regulation of epithelial cell apoptotic process is_a: GO:1904708 ! regulation of granulosa cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1904700 ! granulosa cell apoptotic process -relationship: positively_regulates GO:1904700 ! granulosa cell apoptotic process +intersection_of: RO:0002213 GO:1904700 ! positively regulates granulosa cell apoptotic process +relationship: RO:0002213 GO:1904700 ! positively regulates granulosa cell apoptotic process created_by: sl creation_date: 2015-10-01T16:09:51Z @@ -132777,8 +132272,8 @@ def: "The orderly movement of a vascular associated smooth muscle cell from one synonym: "vascular smooth muscle cell migration" EXACT [] is_a: GO:0014909 ! smooth muscle cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000359 ! vascular associated smooth muscle cell -relationship: results_in_movement_of CL:0000359 ! vascular associated smooth muscle cell +intersection_of: RO:0002565 CL:0000359 ! results in movement of vascular associated smooth muscle cell +relationship: RO:0002565 CL:0000359 ! results in movement of vascular associated smooth muscle cell created_by: rph creation_date: 2015-10-15T09:56:00Z @@ -132936,9 +132431,9 @@ is_a: GO:0043066 ! negative regulation of apoptotic process is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:1904748 ! regulation of apoptotic process involved in development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1902742 ! apoptotic process involved in development -relationship: negatively_regulates GO:0032502 ! developmental process -relationship: negatively_regulates GO:1902742 ! apoptotic process involved in development +intersection_of: RO:0002212 GO:1902742 ! negatively regulates apoptotic process involved in development +relationship: RO:0002212 GO:0032502 ! negatively regulates developmental process +relationship: RO:0002212 GO:1902742 ! negatively regulates apoptotic process involved in development created_by: es creation_date: 2015-10-19T14:12:27Z @@ -133096,9 +132591,9 @@ is_a: GO:0043065 ! positive regulation of apoptotic process is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:1904748 ! regulation of apoptotic process involved in development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1902742 ! apoptotic process involved in development -relationship: positively_regulates GO:0032502 ! developmental process -relationship: positively_regulates GO:1902742 ! apoptotic process involved in development +intersection_of: RO:0002213 GO:1902742 ! positively regulates apoptotic process involved in development +relationship: RO:0002213 GO:0032502 ! positively regulates developmental process +relationship: RO:0002213 GO:1902742 ! positively regulates apoptotic process involved in development created_by: es creation_date: 2015-10-19T14:12:34Z @@ -133139,9 +132634,9 @@ synonym: "regulation of type I programmed cell death involved in development of is_a: GO:0042981 ! regulation of apoptotic process is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1902742 ! apoptotic process involved in development -relationship: regulates GO:0032502 ! developmental process -relationship: regulates GO:1902742 ! apoptotic process involved in development +intersection_of: RO:0002211 GO:1902742 ! regulates (processual) apoptotic process involved in development +relationship: RO:0002211 GO:0032502 ! regulates (processual) developmental process +relationship: RO:0002211 GO:1902742 ! regulates (processual) apoptotic process involved in development created_by: es creation_date: 2015-10-19T15:02:28Z @@ -133155,8 +132650,8 @@ synonym: "regulation of protein localisation to nucleolus" EXACT [GOC:TermGenie] synonym: "regulation of protein localization in nucleolus" EXACT [GOC:TermGenie] is_a: GO:1900180 ! regulation of protein localization to nucleus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1902570 ! protein localization to nucleolus -relationship: regulates GO:1902570 ! protein localization to nucleolus +intersection_of: RO:0002211 GO:1902570 ! regulates (processual) protein localization to nucleolus +relationship: RO:0002211 GO:1902570 ! regulates (processual) protein localization to nucleolus created_by: nc creation_date: 2015-10-19T15:16:17Z @@ -133187,8 +132682,8 @@ synonym: "negative regulation of protein localization in nucleolus" EXACT [GOC:T is_a: GO:1900181 ! negative regulation of protein localization to nucleus is_a: GO:1904749 ! regulation of protein localization to nucleolus intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1902570 ! protein localization to nucleolus -relationship: negatively_regulates GO:1902570 ! protein localization to nucleolus +intersection_of: RO:0002212 GO:1902570 ! negatively regulates protein localization to nucleolus +relationship: RO:0002212 GO:1902570 ! negatively regulates protein localization to nucleolus created_by: nc creation_date: 2015-10-19T15:16:24Z @@ -133219,8 +132714,8 @@ synonym: "upregulation of protein localization to nucleolus" EXACT [GOC:TermGeni is_a: GO:1900182 ! positive regulation of protein localization to nucleus is_a: GO:1904749 ! regulation of protein localization to nucleolus intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1902570 ! protein localization to nucleolus -relationship: positively_regulates GO:1902570 ! protein localization to nucleolus +intersection_of: RO:0002213 GO:1902570 ! positively regulates protein localization to nucleolus +relationship: RO:0002213 GO:1902570 ! positively regulates protein localization to nucleolus created_by: nc creation_date: 2015-10-19T15:16:30Z @@ -133232,8 +132727,8 @@ def: "Any process that modulates the frequency, rate or extent of vascular assoc synonym: "regulation of vascular smooth muscle cell migration" EXACT [GOC:TermGenie] is_a: GO:0014910 ! regulation of smooth muscle cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1904738 ! vascular associated smooth muscle cell migration -relationship: regulates GO:1904738 ! vascular associated smooth muscle cell migration +intersection_of: RO:0002211 GO:1904738 ! regulates (processual) vascular associated smooth muscle cell migration +relationship: RO:0002211 GO:1904738 ! regulates (processual) vascular associated smooth muscle cell migration created_by: rph creation_date: 2015-10-19T15:49:52Z @@ -133254,8 +132749,8 @@ synonym: "negative regulation of vascular smooth muscle cell migration" EXACT [G is_a: GO:0014912 ! negative regulation of smooth muscle cell migration is_a: GO:1904752 ! regulation of vascular associated smooth muscle cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1904738 ! vascular associated smooth muscle cell migration -relationship: negatively_regulates GO:1904738 ! vascular associated smooth muscle cell migration +intersection_of: RO:0002212 GO:1904738 ! negatively regulates vascular associated smooth muscle cell migration +relationship: RO:0002212 GO:1904738 ! negatively regulates vascular associated smooth muscle cell migration created_by: rph creation_date: 2015-10-19T15:49:58Z @@ -133276,8 +132771,8 @@ synonym: "upregulation of vascular smooth muscle cell migration" EXACT [GOC:Term is_a: GO:0014911 ! positive regulation of smooth muscle cell migration is_a: GO:1904752 ! regulation of vascular associated smooth muscle cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1904738 ! vascular associated smooth muscle cell migration -relationship: positively_regulates GO:1904738 ! vascular associated smooth muscle cell migration +intersection_of: RO:0002213 GO:1904738 ! positively regulates vascular associated smooth muscle cell migration +relationship: RO:0002213 GO:1904738 ! positively regulates vascular associated smooth muscle cell migration created_by: rph creation_date: 2015-10-19T15:50:05Z @@ -133290,8 +132785,8 @@ synonym: "intramembranous bones morphogenesis" RELATED [GOC:TermGenie] synonym: "membrane bone morphogenesis" RELATED [GOC:TermGenie] is_a: GO:0060349 ! bone morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002514 ! intramembranous bone -relationship: results_in_morphogenesis_of UBERON:0002514 ! intramembranous bone +intersection_of: RO:0002298 UBERON:0002514 ! results in morphogenesis of intramembranous bone +relationship: RO:0002298 UBERON:0002514 ! results in morphogenesis of intramembranous bone created_by: dos creation_date: 2015-10-28T11:46:04Z @@ -133304,8 +132799,8 @@ comment: An example is cye-1 in C. elegans, UniProt ID O01501 in PMID:17115027. synonym: "regulation of protein localisation to cell cortex" EXACT [GOC:TermGenie] is_a: GO:1904375 ! regulation of protein localization to cell periphery intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072697 ! protein localization to cell cortex -relationship: regulates GO:0072697 ! protein localization to cell cortex +intersection_of: RO:0002211 GO:0072697 ! regulates (processual) protein localization to cell cortex +relationship: RO:0002211 GO:0072697 ! regulates (processual) protein localization to cell cortex created_by: es creation_date: 2015-10-29T16:55:01Z @@ -133327,8 +132822,8 @@ synonym: "negative regulation of protein localisation to cell cortex" EXACT [GOC is_a: GO:1904376 ! negative regulation of protein localization to cell periphery is_a: GO:1904776 ! regulation of protein localization to cell cortex intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0072697 ! protein localization to cell cortex -relationship: negatively_regulates GO:0072697 ! protein localization to cell cortex +intersection_of: RO:0002212 GO:0072697 ! negatively regulates protein localization to cell cortex +relationship: RO:0002212 GO:0072697 ! negatively regulates protein localization to cell cortex created_by: es creation_date: 2015-10-29T16:55:08Z @@ -133350,8 +132845,8 @@ synonym: "upregulation of protein localization to cell cortex" EXACT [GOC:TermGe is_a: GO:1904377 ! positive regulation of protein localization to cell periphery is_a: GO:1904776 ! regulation of protein localization to cell cortex intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0072697 ! protein localization to cell cortex -relationship: positively_regulates GO:0072697 ! protein localization to cell cortex +intersection_of: RO:0002213 GO:0072697 ! positively regulates protein localization to cell cortex +relationship: RO:0002213 GO:0072697 ! positively regulates protein localization to cell cortex created_by: es creation_date: 2015-10-29T16:55:15Z @@ -133363,8 +132858,8 @@ def: "Any process that modulates the frequency, rate or extent of euchromatin bi subset: gocheck_do_not_annotate is_a: GO:0035561 ! regulation of chromatin binding intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990188 ! euchromatin binding -relationship: regulates GO:1990188 ! euchromatin binding +intersection_of: RO:0002211 GO:1990188 ! regulates (processual) euchromatin binding +relationship: RO:0002211 GO:1990188 ! regulates (processual) euchromatin binding created_by: nc creation_date: 2015-11-09T11:43:04Z @@ -133381,8 +132876,8 @@ synonym: "inhibition of euchromatin binding" NARROW [GOC:TermGenie] is_a: GO:0035562 ! negative regulation of chromatin binding is_a: GO:1904793 ! regulation of euchromatin binding intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990188 ! euchromatin binding -relationship: negatively_regulates GO:1990188 ! euchromatin binding +intersection_of: RO:0002212 GO:1990188 ! negatively regulates euchromatin binding +relationship: RO:0002212 GO:1990188 ! negatively regulates euchromatin binding created_by: nc creation_date: 2015-11-09T11:43:12Z @@ -133399,8 +132894,8 @@ synonym: "upregulation of euchromatin binding" EXACT [GOC:TermGenie] is_a: GO:0035563 ! positive regulation of chromatin binding is_a: GO:1904793 ! regulation of euchromatin binding intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990188 ! euchromatin binding -relationship: positively_regulates GO:1990188 ! euchromatin binding +intersection_of: RO:0002213 GO:1990188 ! positively regulates euchromatin binding +relationship: RO:0002213 GO:1990188 ! positively regulates euchromatin binding created_by: nc creation_date: 2015-11-09T11:43:19Z @@ -133413,8 +132908,8 @@ comment: cdk-5 in C.elegans (G5ECH7) in PMID:22699897 (inferred from mutant phen synonym: "regulation of dense core vesicle transport" EXACT [GOC:TermGenie] is_a: GO:0032386 ! regulation of intracellular transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1901950 ! dense core granule transport -relationship: regulates GO:1901950 ! dense core granule transport +intersection_of: RO:0002211 GO:1901950 ! regulates (processual) dense core granule transport +relationship: RO:0002211 GO:1901950 ! regulates (processual) dense core granule transport created_by: es creation_date: 2015-11-11T10:40:10Z @@ -133436,8 +132931,8 @@ synonym: "negative regulation of dense core vesicle transport" EXACT [GOC:TermGe is_a: GO:0032387 ! negative regulation of intracellular transport is_a: GO:1904809 ! regulation of dense core granule transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1901950 ! dense core granule transport -relationship: negatively_regulates GO:1901950 ! dense core granule transport +intersection_of: RO:0002212 GO:1901950 ! negatively regulates dense core granule transport +relationship: RO:0002212 GO:1901950 ! negatively regulates dense core granule transport created_by: es creation_date: 2015-11-11T10:40:18Z @@ -133459,8 +132954,8 @@ synonym: "upregulation of dense core vesicle transport" EXACT [GOC:TermGenie] is_a: GO:0032388 ! positive regulation of intracellular transport is_a: GO:1904809 ! regulation of dense core granule transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1901950 ! dense core granule transport -relationship: positively_regulates GO:1901950 ! dense core granule transport +intersection_of: RO:0002213 GO:1901950 ! positively regulates dense core granule transport +relationship: RO:0002213 GO:1901950 ! positively regulates dense core granule transport created_by: es creation_date: 2015-11-11T10:40:25Z @@ -133474,8 +132969,8 @@ synonym: "tunica serosa development" EXACT [GOC:TermGenie] synonym: "wall of serous sac development" EXACT [GOC:TermGenie] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000042 ! serous membrane -relationship: results_in_development_of UBERON:0000042 ! serous membrane +intersection_of: RO:0002296 UBERON:0000042 ! results in development of serous membrane +relationship: RO:0002296 UBERON:0000042 ! results in development of serous membrane created_by: dph creation_date: 2015-11-17T19:00:01Z @@ -133486,9 +132981,9 @@ namespace: biological_process def: "The process whose specific outcome is the progression of a visceral peritoneum over time, from its formation to the mature structure." [GO_REF:0000094, GOC:dph, GOC:TermGenie, PMID:15840053] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001178 ! visceral peritoneum +intersection_of: RO:0002296 UBERON:0001178 ! results in development of visceral peritoneum relationship: part_of GO:1904820 ! peritoneum development -relationship: results_in_development_of UBERON:0001178 ! visceral peritoneum +relationship: RO:0002296 UBERON:0001178 ! results in development of visceral peritoneum created_by: dph creation_date: 2015-11-17T19:00:17Z @@ -133500,9 +132995,9 @@ def: "The process whose specific outcome is the progression of a parietal perito synonym: "peritoneal cavity lining development" EXACT [GOC:TermGenie] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001366 ! parietal peritoneum +intersection_of: RO:0002296 UBERON:0001366 ! results in development of parietal peritoneum relationship: part_of GO:1904820 ! peritoneum development -relationship: results_in_development_of UBERON:0001366 ! parietal peritoneum +relationship: RO:0002296 UBERON:0001366 ! results in development of parietal peritoneum created_by: dph creation_date: 2015-11-17T19:00:24Z @@ -133514,8 +133009,8 @@ def: "The process whose specific outcome is the progression of a peritoneum over synonym: "peritonaeum development" RELATED [GOC:TermGenie] is_a: GO:1904817 ! serous membrane development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002358 ! peritoneum -relationship: results_in_development_of UBERON:0002358 ! peritoneum +intersection_of: RO:0002296 UBERON:0002358 ! results in development of peritoneum +relationship: RO:0002296 UBERON:0002358 ! results in development of peritoneum created_by: dph creation_date: 2015-11-18T17:23:51Z @@ -133527,10 +133022,10 @@ def: "The process in which a purine nucleobase is transported across a membrane. is_a: GO:0006863 ! purine nucleobase transport is_a: GO:0072530 ! purine-containing compound transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:26386 ! purine nucleobase -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:26386 ! purine nucleobase -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:26386 ! has primary input purine nucleobase +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:26386 ! has primary input purine nucleobase created_by: vw creation_date: 2015-11-19T09:07:56Z @@ -133541,8 +133036,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of aortic smooth muscle cell differentiation." [GO_REF:0000058, GOC:BHF, GOC:BHF_miRNA, GOC:rph, GOC:TermGenie, PMID:22034194] is_a: GO:1905063 ! regulation of vascular associated smooth muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035887 ! aortic smooth muscle cell differentiation -relationship: regulates GO:0035887 ! aortic smooth muscle cell differentiation +intersection_of: RO:0002211 GO:0035887 ! regulates (processual) aortic smooth muscle cell differentiation +relationship: RO:0002211 GO:0035887 ! regulates (processual) aortic smooth muscle cell differentiation created_by: rph creation_date: 2015-11-24T10:20:40Z @@ -133558,8 +133053,8 @@ synonym: "inhibition of aortic smooth muscle cell differentiation" NARROW [GOC:T is_a: GO:1904829 ! regulation of aortic smooth muscle cell differentiation is_a: GO:1905064 ! negative regulation of vascular associated smooth muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035887 ! aortic smooth muscle cell differentiation -relationship: negatively_regulates GO:0035887 ! aortic smooth muscle cell differentiation +intersection_of: RO:0002212 GO:0035887 ! negatively regulates aortic smooth muscle cell differentiation +relationship: RO:0002212 GO:0035887 ! negatively regulates aortic smooth muscle cell differentiation created_by: rph creation_date: 2015-11-24T10:20:47Z @@ -133575,8 +133070,8 @@ synonym: "upregulation of aortic smooth muscle cell differentiation" EXACT [GOC: is_a: GO:1904829 ! regulation of aortic smooth muscle cell differentiation is_a: GO:1905065 ! positive regulation of vascular associated smooth muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035887 ! aortic smooth muscle cell differentiation -relationship: positively_regulates GO:0035887 ! aortic smooth muscle cell differentiation +intersection_of: RO:0002213 GO:0035887 ! positively regulates aortic smooth muscle cell differentiation +relationship: RO:0002213 GO:0035887 ! positively regulates aortic smooth muscle cell differentiation created_by: rph creation_date: 2015-11-24T10:20:54Z @@ -133596,9 +133091,9 @@ synonym: "spinal ganglion morphogenesis" EXACT [GOC:TermGenie] synonym: "spinal ganglion part of peripheral nervous system morphogenesis" EXACT [GOC:TermGenie] is_a: GO:0061552 ! ganglion morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0000044 ! dorsal root ganglion +intersection_of: RO:0002298 UBERON:0000044 ! results in morphogenesis of dorsal root ganglion relationship: part_of GO:1990791 ! dorsal root ganglion development -relationship: results_in_morphogenesis_of UBERON:0000044 ! dorsal root ganglion +relationship: RO:0002298 UBERON:0000044 ! results in morphogenesis of dorsal root ganglion created_by: bf creation_date: 2015-12-01T16:41:17Z @@ -133615,9 +133110,9 @@ synonym: "facio-acoustic ganglion morphogenesis" EXACT [GOC:TermGenie] synonym: "facio-acoustic VII-VIII ganglion complex morphogenesis" RELATED [GOC:TermGenie] is_a: GO:0061559 ! cranial ganglion morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0012175 ! acoustico-facial VII-VIII ganglion complex +intersection_of: RO:0002298 UBERON:0012175 ! results in morphogenesis of acoustico-facial VII-VIII ganglion complex relationship: part_of GO:1903375 ! facioacoustic ganglion development -relationship: results_in_morphogenesis_of UBERON:0012175 ! acoustico-facial VII-VIII ganglion complex +relationship: RO:0002298 UBERON:0012175 ! results in morphogenesis of acoustico-facial VII-VIII ganglion complex created_by: bf creation_date: 2015-12-01T17:02:06Z @@ -133629,8 +133124,8 @@ def: "The aggregation, arrangement and bonding together of a set of components t synonym: "excitatory synapse formation" EXACT [GOC:TermGenie] is_a: GO:0007416 ! synapse assembly intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_assembly_of GO:0060076 ! excitatory synapse -relationship: results_in_assembly_of GO:0060076 ! excitatory synapse +intersection_of: RO:0002588 GO:0060076 ! results in assembly of excitatory synapse +relationship: RO:0002588 GO:0060076 ! results in assembly of excitatory synapse created_by: bf creation_date: 2015-12-17T10:31:26Z @@ -133654,9 +133149,9 @@ synonym: "ventromedial mesencephalic tegmentum development" RELATED [GOC:TermGen synonym: "VTA development" BROAD [GOC:TermGenie] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002691 ! ventral tegmental area +intersection_of: RO:0002296 UBERON:0002691 ! results in development of ventral tegmental area relationship: part_of GO:0030901 ! midbrain development -relationship: results_in_development_of UBERON:0002691 ! ventral tegmental area +relationship: RO:0002296 UBERON:0002691 ! results in development of ventral tegmental area created_by: bf creation_date: 2015-12-17T14:44:18Z @@ -133671,8 +133166,8 @@ synonym: "cranium development" RELATED [GOC:TermGenie] synonym: "osteocranium development" NARROW [GOC:TermGenie] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0010323 ! cranial skeletal system -relationship: results_in_development_of UBERON:0010323 ! cranial skeletal system +intersection_of: RO:0002296 UBERON:0010323 ! results in development of cranial skeletal system +relationship: RO:0002296 UBERON:0010323 ! results in development of cranial skeletal system created_by: bf creation_date: 2016-01-07T13:45:06Z @@ -133684,8 +133179,8 @@ def: "Any process that modulates the frequency, rate or extent of excitatory syn synonym: "regulation of excitatory synapse formation" EXACT [GOC:TermGenie] is_a: GO:0051963 ! regulation of synapse assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1904861 ! excitatory synapse assembly -relationship: regulates GO:1904861 ! excitatory synapse assembly +intersection_of: RO:0002211 GO:1904861 ! regulates (processual) excitatory synapse assembly +relationship: RO:0002211 GO:1904861 ! regulates (processual) excitatory synapse assembly created_by: bf creation_date: 2016-01-07T14:35:53Z @@ -133706,8 +133201,8 @@ synonym: "negative regulation of excitatory synapse formation" EXACT [GOC:TermGe is_a: GO:0051964 ! negative regulation of synapse assembly is_a: GO:1904889 ! regulation of excitatory synapse assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1904861 ! excitatory synapse assembly -relationship: negatively_regulates GO:1904861 ! excitatory synapse assembly +intersection_of: RO:0002212 GO:1904861 ! negatively regulates excitatory synapse assembly +relationship: RO:0002212 GO:1904861 ! negatively regulates excitatory synapse assembly created_by: bf creation_date: 2016-01-07T14:36:00Z @@ -133728,8 +133223,8 @@ synonym: "upregulation of excitatory synapse formation" EXACT [GOC:TermGenie] is_a: GO:0051965 ! positive regulation of synapse assembly is_a: GO:1904889 ! regulation of excitatory synapse assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1904861 ! excitatory synapse assembly -relationship: positively_regulates GO:1904861 ! excitatory synapse assembly +intersection_of: RO:0002213 GO:1904861 ! positively regulates excitatory synapse assembly +relationship: RO:0002213 GO:1904861 ! positively regulates excitatory synapse assembly created_by: bf creation_date: 2016-01-07T14:36:07Z @@ -133743,8 +133238,8 @@ synonym: "regulation of Ito cell proliferation" EXACT [GOC:TermGenie] synonym: "regulation of perisinusoidal cell proliferation" EXACT [GOC:TermGenie] is_a: GO:0048145 ! regulation of fibroblast proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990922 ! hepatic stellate cell proliferation -relationship: regulates GO:1990922 ! hepatic stellate cell proliferation +intersection_of: RO:0002211 GO:1990922 ! regulates (processual) hepatic stellate cell proliferation +relationship: RO:0002211 GO:1990922 ! regulates (processual) hepatic stellate cell proliferation created_by: sl creation_date: 2016-01-14T15:56:59Z @@ -133775,8 +133270,8 @@ synonym: "negative regulation of perisinusoidal cell proliferation" EXACT [GOC:T is_a: GO:0048147 ! negative regulation of fibroblast proliferation is_a: GO:1904897 ! regulation of hepatic stellate cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990922 ! hepatic stellate cell proliferation -relationship: negatively_regulates GO:1990922 ! hepatic stellate cell proliferation +intersection_of: RO:0002212 GO:1990922 ! negatively regulates hepatic stellate cell proliferation +relationship: RO:0002212 GO:1990922 ! negatively regulates hepatic stellate cell proliferation created_by: sl creation_date: 2016-01-14T15:57:06Z @@ -133807,8 +133302,8 @@ synonym: "upregulation of perisinusoidal cell proliferation" EXACT [GOC:TermGeni is_a: GO:0048146 ! positive regulation of fibroblast proliferation is_a: GO:1904897 ! regulation of hepatic stellate cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990922 ! hepatic stellate cell proliferation -relationship: positively_regulates GO:1990922 ! hepatic stellate cell proliferation +intersection_of: RO:0002213 GO:1990922 ! positively regulates hepatic stellate cell proliferation +relationship: RO:0002213 GO:1990922 ! positively regulates hepatic stellate cell proliferation created_by: sl creation_date: 2016-01-14T15:57:13Z @@ -133821,8 +133316,8 @@ synonym: "regulation of cell proliferation in mesencephalon" EXACT [GOC:TermGeni synonym: "regulation of mesencepahalic cell proliferation" RELATED [GOC:TermGenie] is_a: GO:2000177 ! regulation of neural precursor cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0033278 ! cell proliferation in midbrain -relationship: regulates GO:0033278 ! cell proliferation in midbrain +intersection_of: RO:0002211 GO:0033278 ! regulates (processual) cell proliferation in midbrain +relationship: RO:0002211 GO:0033278 ! regulates (processual) cell proliferation in midbrain created_by: bf creation_date: 2016-02-01T13:16:11Z @@ -133848,8 +133343,8 @@ synonym: "negative regulation of mesencepahalic cell proliferation" RELATED [GOC is_a: GO:1904933 ! regulation of cell proliferation in midbrain is_a: GO:2000178 ! negative regulation of neural precursor cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0033278 ! cell proliferation in midbrain -relationship: negatively_regulates GO:0033278 ! cell proliferation in midbrain +intersection_of: RO:0002212 GO:0033278 ! negatively regulates cell proliferation in midbrain +relationship: RO:0002212 GO:0033278 ! negatively regulates cell proliferation in midbrain created_by: bf creation_date: 2016-02-01T13:16:19Z @@ -133875,8 +133370,8 @@ synonym: "upregulation of mesencepahalic cell proliferation" RELATED [GOC:TermGe is_a: GO:1904933 ! regulation of cell proliferation in midbrain is_a: GO:2000179 ! positive regulation of neural precursor cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0033278 ! cell proliferation in midbrain -relationship: positively_regulates GO:0033278 ! cell proliferation in midbrain +intersection_of: RO:0002213 GO:0033278 ! positively regulates cell proliferation in midbrain +relationship: RO:0002213 GO:0033278 ! positively regulates cell proliferation in midbrain created_by: bf creation_date: 2016-02-01T13:16:27Z @@ -133889,8 +133384,8 @@ synonym: "inter neuron migration" EXACT [GOC:ah] synonym: "inter-neuron migration" EXACT [GOC:ah] is_a: GO:0001764 ! neuron migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000099 ! interneuron -relationship: results_in_movement_of CL:0000099 ! interneuron +intersection_of: RO:0002565 CL:0000099 ! results in movement of interneuron +relationship: RO:0002565 CL:0000099 ! results in movement of interneuron created_by: ah creation_date: 2016-02-01T14:04:32Z @@ -133901,8 +133396,8 @@ namespace: biological_process def: "The orderly movement of a sensory neuron from one site to another." [GO_REF:0000091, GOC:ah, GOC:TermGenie, PMID:18622031] is_a: GO:0001764 ! neuron migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000101 ! sensory neuron -relationship: results_in_movement_of CL:0000101 ! sensory neuron +intersection_of: RO:0002565 CL:0000101 ! results in movement of sensory neuron +relationship: RO:0002565 CL:0000101 ! results in movement of sensory neuron created_by: ah creation_date: 2016-02-01T14:15:50Z @@ -133913,8 +133408,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cardiac ventricle formation." [GO_REF:0000058, GOC:bc, GOC:BHF, GOC:BHF_miRNA, GOC:TermGenie, PMID:23575307] is_a: GO:1901210 ! regulation of cardiac chamber formation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003211 ! cardiac ventricle formation -relationship: regulates GO:0003211 ! cardiac ventricle formation +intersection_of: RO:0002211 GO:0003211 ! regulates (processual) cardiac ventricle formation +relationship: RO:0002211 GO:0003211 ! regulates (processual) cardiac ventricle formation created_by: bc creation_date: 2016-02-02T16:37:16Z @@ -133931,9 +133426,9 @@ is_a: GO:1901211 ! negative regulation of cardiac chamber formation is_a: GO:1904413 ! negative regulation of cardiac ventricle development is_a: GO:1904942 ! regulation of cardiac ventricle formation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003211 ! cardiac ventricle formation -relationship: negatively_regulates GO:0003211 ! cardiac ventricle formation -relationship: negatively_regulates GO:0003231 ! cardiac ventricle development +intersection_of: RO:0002212 GO:0003211 ! negatively regulates cardiac ventricle formation +relationship: RO:0002212 GO:0003211 ! negatively regulates cardiac ventricle formation +relationship: RO:0002212 GO:0003231 ! negatively regulates cardiac ventricle development created_by: bc creation_date: 2016-02-02T16:37:24Z @@ -133949,8 +133444,8 @@ synonym: "upregulation of cardiac ventricle formation" EXACT [GOC:TermGenie] is_a: GO:1901212 ! positive regulation of cardiac chamber formation is_a: GO:1904942 ! regulation of cardiac ventricle formation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003211 ! cardiac ventricle formation -relationship: positively_regulates GO:0003211 ! cardiac ventricle formation +intersection_of: RO:0002213 GO:0003211 ! positively regulates cardiac ventricle formation +relationship: RO:0002213 GO:0003211 ! positively regulates cardiac ventricle formation created_by: bc creation_date: 2016-02-02T16:37:31Z @@ -133966,9 +133461,9 @@ synonym: "midbrain dopaminergic neuron production" EXACT [PMID:19122665] is_a: GO:0021953 ! central nervous system neuron differentiation is_a: GO:0071542 ! dopaminergic neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:2000097 ! midbrain dopaminergic neuron +intersection_of: RO:0002315 CL:2000097 ! results in acquisition of features of midbrain dopaminergic neuron relationship: part_of GO:0030901 ! midbrain development -relationship: results_in_acquisition_of_features_of CL:2000097 ! midbrain dopaminergic neuron +relationship: RO:0002315 CL:2000097 ! results in acquisition of features of midbrain dopaminergic neuron created_by: bf creation_date: 2016-02-04T14:38:10Z @@ -133999,8 +133494,8 @@ synonym: "negative regulation of protein recruitment" EXACT [GOC:TermGenie] is_a: GO:0048519 ! negative regulation of biological process is_a: GO:0070201 ! regulation of establishment of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0045184 ! establishment of protein localization -relationship: negatively_regulates GO:0045184 ! establishment of protein localization +intersection_of: RO:0002212 GO:0045184 ! negatively regulates establishment of protein localization +relationship: RO:0002212 GO:0045184 ! negatively regulates establishment of protein localization created_by: mec creation_date: 2016-02-05T09:59:24Z @@ -134031,8 +133526,8 @@ synonym: "upregulation of protein recruitment" EXACT [GOC:TermGenie] is_a: GO:0048518 ! positive regulation of biological process is_a: GO:0070201 ! regulation of establishment of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0045184 ! establishment of protein localization -relationship: positively_regulates GO:0045184 ! establishment of protein localization +intersection_of: RO:0002213 GO:0045184 ! positively regulates establishment of protein localization +relationship: RO:0002213 GO:0045184 ! positively regulates establishment of protein localization created_by: mec creation_date: 2016-02-05T09:59:32Z @@ -134047,8 +133542,8 @@ synonym: "regulation of midbrain DA neurogenesis" EXACT [GOC:TermGenie] synonym: "regulation of midbrain dopaminergic neuron production" EXACT [GOC:TermGenie] is_a: GO:1904338 ! regulation of dopaminergic neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1904948 ! midbrain dopaminergic neuron differentiation -relationship: regulates GO:1904948 ! midbrain dopaminergic neuron differentiation +intersection_of: RO:0002211 GO:1904948 ! regulates (processual) midbrain dopaminergic neuron differentiation +relationship: RO:0002211 GO:1904948 ! regulates (processual) midbrain dopaminergic neuron differentiation created_by: bf creation_date: 2016-02-09T12:00:21Z @@ -134084,8 +133579,8 @@ synonym: "negative regulation of midbrain dopaminergic neuron production" EXACT is_a: GO:1904339 ! negative regulation of dopaminergic neuron differentiation is_a: GO:1904956 ! regulation of midbrain dopaminergic neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1904948 ! midbrain dopaminergic neuron differentiation -relationship: negatively_regulates GO:1904948 ! midbrain dopaminergic neuron differentiation +intersection_of: RO:0002212 GO:1904948 ! negatively regulates midbrain dopaminergic neuron differentiation +relationship: RO:0002212 GO:1904948 ! negatively regulates midbrain dopaminergic neuron differentiation created_by: bf creation_date: 2016-02-09T12:00:29Z @@ -134121,8 +133616,8 @@ synonym: "upregulation of midbrain dopaminergic neuron production" EXACT [GOC:Te is_a: GO:1904340 ! positive regulation of dopaminergic neuron differentiation is_a: GO:1904956 ! regulation of midbrain dopaminergic neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1904948 ! midbrain dopaminergic neuron differentiation -relationship: positively_regulates GO:1904948 ! midbrain dopaminergic neuron differentiation +intersection_of: RO:0002213 GO:1904948 ! positively regulates midbrain dopaminergic neuron differentiation +relationship: RO:0002213 GO:1904948 ! positively regulates midbrain dopaminergic neuron differentiation created_by: bf creation_date: 2016-02-09T12:00:36Z @@ -134135,11 +133630,25 @@ comment: The directional migration of a slow muscle cell from one site to anothe synonym: "slow-twitch muscle cell migration" EXACT [PMID:14667409] is_a: GO:0110122 ! myotube cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000189 ! slow muscle cell -relationship: results_in_movement_of CL:0000189 ! slow muscle cell +intersection_of: RO:0002565 CL:0000189 ! results in movement of slow muscle cell +relationship: RO:0002565 CL:0000189 ! results in movement of slow muscle cell created_by: ymb creation_date: 2016-02-16T21:20:11Z +[Term] +id: GO:1904970 +name: brush border assembly +namespace: biological_process +def: "The aggregation, arrangement and bonding together of adjacent microvilli through the formation of Ca(2+)-dependent adhesion links between them, forming a brush border." [GO_REF:0000079, GOC:lb, GOC:TermGenie, PMID:24725409] +synonym: "brush border formation" EXACT [GOC:TermGenie] +is_a: GO:0022607 ! cellular component assembly +intersection_of: GO:0022607 ! cellular component assembly +intersection_of: RO:0002588 GO:0005903 ! results in assembly of brush border +relationship: never_in_taxon NCBITaxon:4751 ! Fungi +relationship: RO:0002588 GO:0005903 ! results in assembly of brush border +created_by: tb +creation_date: 2016-02-17T00:58:30Z + [Term] id: GO:1904977 name: lymphatic endothelial cell migration @@ -134147,9 +133656,9 @@ namespace: biological_process def: "The orderly movement of a lymphatic endothelial cell from one site to another in the wall of a lymphatic vessel." [GO_REF:0000091, GOC:TermGenie, PMID:25745057] is_a: GO:0043542 ! endothelial cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0002138 ! endothelial cell of lymphatic vessel +intersection_of: RO:0002565 CL:0002138 ! results in movement of endothelial cell of lymphatic vessel relationship: part_of GO:0036303 ! lymph vessel morphogenesis -relationship: results_in_movement_of CL:0002138 ! endothelial cell of lymphatic vessel +relationship: RO:0002565 CL:0002138 ! results in movement of endothelial cell of lymphatic vessel created_by: dgh creation_date: 2016-02-18T20:49:43Z @@ -134160,8 +133669,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of endothelial cell activation." [GO_REF:0000058, GOC:bc, GOC:BHF, GOC:BHF_miRNA, GOC:TermGenie, PMID:24255059] is_a: GO:0050865 ! regulation of cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042118 ! endothelial cell activation -relationship: regulates GO:0042118 ! endothelial cell activation +intersection_of: RO:0002211 GO:0042118 ! regulates (processual) endothelial cell activation +relationship: RO:0002211 GO:0042118 ! regulates (processual) endothelial cell activation created_by: bc creation_date: 2016-02-29T16:16:09Z @@ -134177,8 +133686,8 @@ synonym: "inhibition of endothelial cell activation" NARROW [GOC:TermGenie] is_a: GO:0050866 ! negative regulation of cell activation is_a: GO:1904987 ! regulation of endothelial cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042118 ! endothelial cell activation -relationship: negatively_regulates GO:0042118 ! endothelial cell activation +intersection_of: RO:0002212 GO:0042118 ! negatively regulates endothelial cell activation +relationship: RO:0002212 GO:0042118 ! negatively regulates endothelial cell activation created_by: bc creation_date: 2016-02-29T16:16:18Z @@ -134194,8 +133703,8 @@ synonym: "upregulation of endothelial cell activation" EXACT [GOC:TermGenie] is_a: GO:0050867 ! positive regulation of cell activation is_a: GO:1904987 ! regulation of endothelial cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042118 ! endothelial cell activation -relationship: positively_regulates GO:0042118 ! endothelial cell activation +intersection_of: RO:0002213 GO:0042118 ! positively regulates endothelial cell activation +relationship: RO:0002213 GO:0042118 ! positively regulates endothelial cell activation created_by: bc creation_date: 2016-02-29T16:16:25Z @@ -134209,14 +133718,14 @@ synonym: "vacuolar phosphate transport" BROAD [] is_a: GO:0034486 ! vacuolar transmembrane transport is_a: GO:0035435 ! phosphate ion transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:43474 ! hydrogenphosphate -intersection_of: has_target_end_location GO:0005775 ! vacuolar lumen -intersection_of: has_target_start_location GO:0005829 ! cytosol -intersection_of: results_in_transport_across GO:0005774 ! vacuolar membrane -relationship: has_primary_input CHEBI:43474 ! hydrogenphosphate -relationship: has_target_end_location GO:0005775 ! vacuolar lumen -relationship: has_target_start_location GO:0005829 ! cytosol -relationship: results_in_transport_across GO:0005774 ! vacuolar membrane +intersection_of: RO:0002338 GO:0005829 ! has target start location cytosol +intersection_of: RO:0002339 GO:0005775 ! has target end location vacuolar lumen +intersection_of: RO:0002342 GO:0005774 ! results in transport across vacuolar membrane +intersection_of: RO:0004009 CHEBI:43474 ! has primary input hydrogenphosphate +relationship: RO:0002338 GO:0005829 ! has target start location cytosol +relationship: RO:0002339 GO:0005775 ! has target end location vacuolar lumen +relationship: RO:0002342 GO:0005774 ! results in transport across vacuolar membrane +relationship: RO:0004009 CHEBI:43474 ! has primary input hydrogenphosphate created_by: tb creation_date: 2016-03-03T00:34:12Z @@ -134227,10 +133736,9 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of membrane lipid metabolic process." [GO_REF:0000058, GOC:TermGenie, PMID:25954280] synonym: "regulation of membrane lipid metabolism" EXACT [GOC:TermGenie] is_a: GO:0019216 ! regulation of lipid metabolic process -is_a: GO:0031323 ! regulation of cellular metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006643 ! membrane lipid metabolic process -relationship: regulates GO:0006643 ! membrane lipid metabolic process +intersection_of: RO:0002211 GO:0006643 ! regulates (processual) membrane lipid metabolic process +relationship: RO:0002211 GO:0006643 ! regulates (processual) membrane lipid metabolic process created_by: tb creation_date: 2016-03-08T20:41:32Z @@ -134242,10 +133750,10 @@ def: "The process in which carboxylic acid is transported across a membrane." [G is_a: GO:0046942 ! carboxylic acid transport is_a: GO:0055085 ! transmembrane transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29067 ! carboxylic acid anion -intersection_of: results_in_transport_across GO:0016020 ! membrane -relationship: has_primary_input CHEBI:29067 ! carboxylic acid anion -relationship: results_in_transport_across GO:0016020 ! membrane +intersection_of: RO:0002342 GO:0016020 ! results in transport across membrane +intersection_of: RO:0004009 CHEBI:29067 ! has primary input carboxylic acid anion +relationship: RO:0002342 GO:0016020 ! results in transport across membrane +relationship: RO:0004009 CHEBI:29067 ! has primary input carboxylic acid anion created_by: vw creation_date: 2016-03-09T15:33:53Z @@ -134262,8 +133770,8 @@ synonym: "octaval VIII placode development" RELATED [GOC:TermGenie] synonym: "placoda otica development" EXACT [GOC:TermGenie] is_a: GO:0071696 ! ectodermal placode development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003069 ! otic placode -relationship: results_in_development_of UBERON:0003069 ! otic placode +intersection_of: RO:0002296 UBERON:0003069 ! results in development of otic placode +relationship: RO:0002296 UBERON:0003069 ! results in development of otic placode created_by: bf creation_date: 2016-03-10T09:30:20Z @@ -134276,8 +133784,8 @@ synonym: "regulation of vascular smooth muscle cell differentiation" EXACT [GOC: synonym: "regulation of VSMC differentiation" EXACT [GOC:TermGenie] is_a: GO:0051150 ! regulation of smooth muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035886 ! vascular associated smooth muscle cell differentiation -relationship: regulates GO:0035886 ! vascular associated smooth muscle cell differentiation +intersection_of: RO:0002211 GO:0035886 ! regulates (processual) vascular associated smooth muscle cell differentiation +relationship: RO:0002211 GO:0035886 ! regulates (processual) vascular associated smooth muscle cell differentiation created_by: rph creation_date: 2016-03-21T11:14:53Z @@ -134303,8 +133811,8 @@ synonym: "negative regulation of VSMC differentiation" EXACT [GOC:TermGenie] is_a: GO:0051151 ! negative regulation of smooth muscle cell differentiation is_a: GO:1905063 ! regulation of vascular associated smooth muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035886 ! vascular associated smooth muscle cell differentiation -relationship: negatively_regulates GO:0035886 ! vascular associated smooth muscle cell differentiation +intersection_of: RO:0002212 GO:0035886 ! negatively regulates vascular associated smooth muscle cell differentiation +relationship: RO:0002212 GO:0035886 ! negatively regulates vascular associated smooth muscle cell differentiation created_by: rph creation_date: 2016-03-21T11:15:03Z @@ -134330,8 +133838,8 @@ synonym: "upregulation of VSMC differentiation" EXACT [GOC:TermGenie] is_a: GO:0051152 ! positive regulation of smooth muscle cell differentiation is_a: GO:1905063 ! regulation of vascular associated smooth muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035886 ! vascular associated smooth muscle cell differentiation -relationship: positively_regulates GO:0035886 ! vascular associated smooth muscle cell differentiation +intersection_of: RO:0002213 GO:0035886 ! positively regulates vascular associated smooth muscle cell differentiation +relationship: RO:0002213 GO:0035886 ! positively regulates vascular associated smooth muscle cell differentiation created_by: rph creation_date: 2016-03-21T11:15:13Z @@ -134343,8 +133851,8 @@ def: "The process whose specific outcome is the progression of an allantois over synonym: "allantoic bud development" RELATED [GOC:TermGenie] is_a: GO:1903867 ! extraembryonic membrane development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0004340 ! allantois -relationship: results_in_development_of UBERON:0004340 ! allantois +intersection_of: RO:0002296 UBERON:0004340 ! results in development of allantois +relationship: RO:0002296 UBERON:0004340 ! results in development of allantois created_by: cls creation_date: 2016-03-21T15:18:21Z @@ -134355,8 +133863,8 @@ namespace: biological_process def: "The orderly movement of an anterior visceral endoderm cell from one site to another." [GO_REF:0000091, GOC:TermGenie, PMID:17078044] is_a: GO:0016477 ! cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:2000075 ! anterior visceral endoderm cell -relationship: results_in_movement_of CL:2000075 ! anterior visceral endoderm cell +intersection_of: RO:0002565 CL:2000075 ! results in movement of anterior visceral endoderm cell +relationship: RO:0002565 CL:2000075 ! results in movement of anterior visceral endoderm cell created_by: cls creation_date: 2016-03-21T15:18:32Z @@ -134370,8 +133878,8 @@ synonym: "occluding junction disassembly" EXACT [] is_a: GO:0120193 ! tight junction organization is_a: GO:0150147 ! cell-cell junction disassembly intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0070160 ! tight junction -relationship: results_in_disassembly_of GO:0070160 ! tight junction +intersection_of: RO:0002590 GO:0070160 ! results in disassembly of tight junction +relationship: RO:0002590 GO:0070160 ! results in disassembly of tight junction created_by: rl creation_date: 2016-03-23T12:35:08Z @@ -134383,9 +133891,9 @@ def: "The process whose specific outcome is the progression of cardiac jelly ove synonym: "heart cardiac jelly development" EXACT [GOC:TermGenie] is_a: GO:0009888 ! tissue development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0003906 ! cardiac jelly +intersection_of: RO:0002296 UBERON:0003906 ! results in development of cardiac jelly relationship: part_of GO:0007507 ! heart development -relationship: results_in_development_of UBERON:0003906 ! cardiac jelly +relationship: RO:0002296 UBERON:0003906 ! results in development of cardiac jelly created_by: rl creation_date: 2016-03-23T13:17:59Z @@ -134398,8 +133906,8 @@ synonym: "regulation of occluding cell junction disassembly" EXACT [GOC:TermGeni synonym: "regulation of occluding junction disassembly" EXACT [GOC:TermGenie] is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1905071 ! tight junction disassembly -relationship: regulates GO:1905071 ! tight junction disassembly +intersection_of: RO:0002211 GO:1905071 ! regulates (processual) tight junction disassembly +relationship: RO:0002211 GO:1905071 ! regulates (processual) tight junction disassembly created_by: rl creation_date: 2016-03-23T19:32:51Z @@ -134422,8 +133930,8 @@ synonym: "negative regulation of occluding cell junction disassembly" EXACT [GOC is_a: GO:0051129 ! negative regulation of cellular component organization is_a: GO:1905073 ! regulation of tight junction disassembly intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1905071 ! tight junction disassembly -relationship: negatively_regulates GO:1905071 ! tight junction disassembly +intersection_of: RO:0002212 GO:1905071 ! negatively regulates tight junction disassembly +relationship: RO:0002212 GO:1905071 ! negatively regulates tight junction disassembly created_by: rl creation_date: 2016-03-23T19:33:01Z @@ -134446,8 +133954,8 @@ synonym: "upregulation of tight junction disassembly" EXACT [GOC:TermGenie] is_a: GO:0051130 ! positive regulation of cellular component organization is_a: GO:1905073 ! regulation of tight junction disassembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1905071 ! tight junction disassembly -relationship: positively_regulates GO:1905071 ! tight junction disassembly +intersection_of: RO:0002213 GO:1905071 ! positively regulates tight junction disassembly +relationship: RO:0002213 GO:1905071 ! positively regulates tight junction disassembly created_by: rl creation_date: 2016-03-23T19:33:10Z @@ -134459,9 +133967,9 @@ def: "Any process that modulates the frequency, rate or extent of cerebellar neu is_a: GO:0045664 ! regulation of neuron differentiation is_a: GO:0060284 ! regulation of cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0098749 ! cerebellar neuron development -relationship: regulates GO:0030182 ! neuron differentiation -relationship: regulates GO:0098749 ! cerebellar neuron development +intersection_of: RO:0002211 GO:0098749 ! regulates (processual) cerebellar neuron development +relationship: RO:0002211 GO:0030182 ! regulates (processual) neuron differentiation +relationship: RO:0002211 GO:0098749 ! regulates (processual) cerebellar neuron development created_by: hjd creation_date: 2016-03-24T19:45:17Z @@ -134478,9 +133986,9 @@ is_a: GO:0010721 ! negative regulation of cell development is_a: GO:0045665 ! negative regulation of neuron differentiation is_a: GO:1905079 ! regulation of cerebellar neuron development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0098749 ! cerebellar neuron development -relationship: negatively_regulates GO:0030182 ! neuron differentiation -relationship: negatively_regulates GO:0098749 ! cerebellar neuron development +intersection_of: RO:0002212 GO:0098749 ! negatively regulates cerebellar neuron development +relationship: RO:0002212 GO:0030182 ! negatively regulates neuron differentiation +relationship: RO:0002212 GO:0098749 ! negatively regulates cerebellar neuron development created_by: hjd creation_date: 2016-03-24T19:45:26Z @@ -134497,9 +134005,9 @@ is_a: GO:0010720 ! positive regulation of cell development is_a: GO:0045666 ! positive regulation of neuron differentiation is_a: GO:1905079 ! regulation of cerebellar neuron development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0098749 ! cerebellar neuron development -relationship: positively_regulates GO:0030182 ! neuron differentiation -relationship: positively_regulates GO:0098749 ! cerebellar neuron development +intersection_of: RO:0002213 GO:0098749 ! positively regulates cerebellar neuron development +relationship: RO:0002213 GO:0030182 ! positively regulates neuron differentiation +relationship: RO:0002213 GO:0098749 ! positively regulates cerebellar neuron development created_by: hjd creation_date: 2016-03-24T19:45:35Z @@ -134512,8 +134020,8 @@ synonym: "regulation of axonal protein transport" NARROW [GOC:TermGenie] is_a: GO:0033157 ! regulation of intracellular protein transport is_a: GO:0060632 ! regulation of microtubule-based movement intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0099640 ! axo-dendritic protein transport -relationship: regulates GO:0099640 ! axo-dendritic protein transport +intersection_of: RO:0002211 GO:0099640 ! regulates (processual) axo-dendritic protein transport +relationship: RO:0002211 GO:0099640 ! regulates (processual) axo-dendritic protein transport created_by: sl creation_date: 2016-04-11T20:38:31Z @@ -134534,8 +134042,8 @@ synonym: "negative regulation of axonal protein transport" NARROW [GOC:TermGenie is_a: GO:0090317 ! negative regulation of intracellular protein transport is_a: GO:1905126 ! regulation of axo-dendritic protein transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0099640 ! axo-dendritic protein transport -relationship: negatively_regulates GO:0099640 ! axo-dendritic protein transport +intersection_of: RO:0002212 GO:0099640 ! negatively regulates axo-dendritic protein transport +relationship: RO:0002212 GO:0099640 ! negatively regulates axo-dendritic protein transport created_by: sl creation_date: 2016-04-11T20:38:40Z @@ -134556,8 +134064,8 @@ synonym: "upregulation of axonal protein transport" NARROW [GOC:TermGenie] is_a: GO:0090316 ! positive regulation of intracellular protein transport is_a: GO:1905126 ! regulation of axo-dendritic protein transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0099640 ! axo-dendritic protein transport -relationship: positively_regulates GO:0099640 ! axo-dendritic protein transport +intersection_of: RO:0002213 GO:0099640 ! positively regulates axo-dendritic protein transport +relationship: RO:0002213 GO:0099640 ! positively regulates axo-dendritic protein transport created_by: sl creation_date: 2016-04-11T20:38:48Z @@ -134571,9 +134079,9 @@ synonym: "apical epidermal ridge formation" EXACT [GOC:TermGenie] synonym: "crista ectodermalis apicalis formation" RELATED [GOC:TermGenie] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0004356 ! apical ectodermal ridge +intersection_of: RO:0002297 UBERON:0004356 ! results in formation of anatomical entity apical ectodermal ridge relationship: part_of GO:0035107 ! appendage morphogenesis -relationship: results_in_formation_of_anatomical_entity UBERON:0004356 ! apical ectodermal ridge +relationship: RO:0002297 UBERON:0004356 ! results in formation of anatomical entity apical ectodermal ridge created_by: dph creation_date: 2016-04-13T11:46:40Z @@ -134587,9 +134095,9 @@ synonym: "regulation of apical epidermal ridge formation" EXACT [GOC:TermGenie] synonym: "regulation of crista ectodermalis apicalis formation" RELATED [GOC:TermGenie] is_a: GO:0022603 ! regulation of anatomical structure morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1905139 ! apical ectodermal ridge formation -relationship: regulates GO:0009653 ! anatomical structure morphogenesis -relationship: regulates GO:1905139 ! apical ectodermal ridge formation +intersection_of: RO:0002211 GO:1905139 ! regulates (processual) apical ectodermal ridge formation +relationship: RO:0002211 GO:0009653 ! regulates (processual) anatomical structure morphogenesis +relationship: RO:0002211 GO:1905139 ! regulates (processual) apical ectodermal ridge formation created_by: dph creation_date: 2016-04-13T12:16:40Z @@ -134621,9 +134129,9 @@ is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1905140 ! regulation of apical ectodermal ridge formation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1905139 ! apical ectodermal ridge formation -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:1905139 ! apical ectodermal ridge formation +intersection_of: RO:0002212 GO:1905139 ! negatively regulates apical ectodermal ridge formation +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:1905139 ! negatively regulates apical ectodermal ridge formation created_by: dph creation_date: 2016-04-13T12:16:48Z @@ -134652,9 +134160,9 @@ is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1905140 ! regulation of apical ectodermal ridge formation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1905139 ! apical ectodermal ridge formation -relationship: positively_regulates GO:0032501 ! multicellular organismal process -relationship: positively_regulates GO:1905139 ! apical ectodermal ridge formation +intersection_of: RO:0002213 GO:1905139 ! positively regulates apical ectodermal ridge formation +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process +relationship: RO:0002213 GO:1905139 ! positively regulates apical ectodermal ridge formation created_by: dph creation_date: 2016-04-13T12:16:57Z @@ -134666,8 +134174,8 @@ def: "Any process that results in a change in state or activity of a cell or an is_a: GO:1901698 ! response to nitrogen compound is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:15355 ! acetylcholine -relationship: has_primary_input CHEBI:15355 ! acetylcholine +intersection_of: RO:0004009 CHEBI:15355 ! has primary input acetylcholine +relationship: RO:0004009 CHEBI:15355 ! has primary input acetylcholine created_by: dos creation_date: 2016-04-14T08:54:49Z @@ -134680,8 +134188,8 @@ is_a: GO:1901699 ! cellular response to nitrogen compound is_a: GO:1901701 ! cellular response to oxygen-containing compound is_a: GO:1905144 ! response to acetylcholine intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:15355 ! acetylcholine -relationship: has_primary_input CHEBI:15355 ! acetylcholine +intersection_of: RO:0004009 CHEBI:15355 ! has primary input acetylcholine +relationship: RO:0004009 CHEBI:15355 ! has primary input acetylcholine created_by: dos creation_date: 2016-04-14T08:54:58Z @@ -134701,8 +134209,8 @@ synonym: "lysosomal proteolysis" RELATED [PMID:24334770] synonym: "proteolysis within lysosome" RELATED [GOC:bf] is_a: GO:0007039 ! protein catabolic process in the vacuole intersection_of: GO:0030163 ! protein catabolic process -intersection_of: occurs_in GO:0005764 ! lysosome -relationship: occurs_in GO:0005764 ! lysosome +intersection_of: BFO:0000066 GO:0005764 ! occurs in lysosome +relationship: BFO:0000066 GO:0005764 ! occurs in lysosome created_by: bf creation_date: 2016-04-14T12:50:34Z @@ -134714,8 +134222,8 @@ def: "Any process that modulates the frequency, rate or extent of smooth muscle is_a: GO:0014743 ! regulation of muscle hypertrophy is_a: GO:0043502 ! regulation of muscle adaptation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014895 ! smooth muscle hypertrophy -relationship: regulates GO:0014895 ! smooth muscle hypertrophy +intersection_of: RO:0002211 GO:0014895 ! regulates (processual) smooth muscle hypertrophy +relationship: RO:0002211 GO:0014895 ! regulates (processual) smooth muscle hypertrophy created_by: bc creation_date: 2016-04-15T12:47:07Z @@ -134732,8 +134240,8 @@ is_a: GO:0014741 ! negative regulation of muscle hypertrophy is_a: GO:0014745 ! negative regulation of muscle adaptation is_a: GO:1905147 ! regulation of smooth muscle hypertrophy intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014895 ! smooth muscle hypertrophy -relationship: negatively_regulates GO:0014895 ! smooth muscle hypertrophy +intersection_of: RO:0002212 GO:0014895 ! negatively regulates smooth muscle hypertrophy +relationship: RO:0002212 GO:0014895 ! negatively regulates smooth muscle hypertrophy created_by: bc creation_date: 2016-04-15T12:47:16Z @@ -134750,8 +134258,8 @@ is_a: GO:0014742 ! positive regulation of muscle hypertrophy is_a: GO:0014744 ! positive regulation of muscle adaptation is_a: GO:1905147 ! regulation of smooth muscle hypertrophy intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014895 ! smooth muscle hypertrophy -relationship: positively_regulates GO:0014895 ! smooth muscle hypertrophy +intersection_of: RO:0002213 GO:0014895 ! positively regulates smooth muscle hypertrophy +relationship: RO:0002213 GO:0014895 ! positively regulates smooth muscle hypertrophy created_by: bc creation_date: 2016-04-15T12:47:24Z @@ -134762,8 +134270,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of membrane invagination." [GO_REF:0000058, GOC:bf, GOC:PARL, GOC:TermGenie, PMID:26589353] is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0010324 ! membrane invagination -relationship: regulates GO:0010324 ! membrane invagination +intersection_of: RO:0002211 GO:0010324 ! regulates (processual) membrane invagination +relationship: RO:0002211 GO:0010324 ! regulates (processual) membrane invagination created_by: bf creation_date: 2016-04-18T15:43:54Z @@ -134779,8 +134287,8 @@ synonym: "inhibition of membrane invagination" NARROW [GOC:TermGenie] is_a: GO:0051129 ! negative regulation of cellular component organization is_a: GO:1905153 ! regulation of membrane invagination intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0010324 ! membrane invagination -relationship: negatively_regulates GO:0010324 ! membrane invagination +intersection_of: RO:0002212 GO:0010324 ! negatively regulates membrane invagination +relationship: RO:0002212 GO:0010324 ! negatively regulates membrane invagination created_by: bf creation_date: 2016-04-18T15:44:04Z @@ -134796,8 +134304,8 @@ synonym: "upregulation of membrane invagination" EXACT [GOC:TermGenie] is_a: GO:0051130 ! positive regulation of cellular component organization is_a: GO:1905153 ! regulation of membrane invagination intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0010324 ! membrane invagination -relationship: positively_regulates GO:0010324 ! membrane invagination +intersection_of: RO:0002213 GO:0010324 ! positively regulates membrane invagination +relationship: RO:0002213 GO:0010324 ! positively regulates membrane invagination created_by: bf creation_date: 2016-04-18T15:44:12Z @@ -134816,8 +134324,8 @@ synonym: "regulation of lysosomal proteolysis" RELATED [GOC:TermGenie] synonym: "regulation of proteolysis within lysosome" RELATED [GOC:TermGenie] is_a: GO:1904350 ! regulation of protein catabolic process in the vacuole intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1905146 ! lysosomal protein catabolic process -relationship: regulates GO:1905146 ! lysosomal protein catabolic process +intersection_of: RO:0002211 GO:1905146 ! regulates (processual) lysosomal protein catabolic process +relationship: RO:0002211 GO:1905146 ! regulates (processual) lysosomal protein catabolic process created_by: bf creation_date: 2016-04-26T12:10:01Z @@ -134873,8 +134381,8 @@ synonym: "negative regulation of proteolysis within lysosome" RELATED [GOC:TermG is_a: GO:1904351 ! negative regulation of protein catabolic process in the vacuole is_a: GO:1905165 ! regulation of lysosomal protein catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1905146 ! lysosomal protein catabolic process -relationship: negatively_regulates GO:1905146 ! lysosomal protein catabolic process +intersection_of: RO:0002212 GO:1905146 ! negatively regulates lysosomal protein catabolic process +relationship: RO:0002212 GO:1905146 ! negatively regulates lysosomal protein catabolic process created_by: bf creation_date: 2016-04-26T12:10:10Z @@ -134930,8 +134438,8 @@ synonym: "upregulation of proteolysis within lysosome" RELATED [GOC:TermGenie] is_a: GO:1904352 ! positive regulation of protein catabolic process in the vacuole is_a: GO:1905165 ! regulation of lysosomal protein catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1905146 ! lysosomal protein catabolic process -relationship: positively_regulates GO:1905146 ! lysosomal protein catabolic process +intersection_of: RO:0002213 GO:1905146 ! positively regulates lysosomal protein catabolic process +relationship: RO:0002213 GO:1905146 ! positively regulates lysosomal protein catabolic process created_by: bf creation_date: 2016-04-26T12:10:19Z @@ -134944,8 +134452,8 @@ synonym: "regulation of cardiac cell differentiation" EXACT [GOC:TermGenie] synonym: "regulation of heart cell differentiation" EXACT [GOC:TermGenie] is_a: GO:0045595 ! regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035051 ! cardiocyte differentiation -relationship: regulates GO:0035051 ! cardiocyte differentiation +intersection_of: RO:0002211 GO:0035051 ! regulates (processual) cardiocyte differentiation +relationship: RO:0002211 GO:0035051 ! regulates (processual) cardiocyte differentiation created_by: bc creation_date: 2016-06-02T07:20:01Z @@ -134972,9 +134480,9 @@ is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1905207 ! regulation of cardiocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035051 ! cardiocyte differentiation -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0035051 ! cardiocyte differentiation +intersection_of: RO:0002212 GO:0035051 ! negatively regulates cardiocyte differentiation +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0035051 ! negatively regulates cardiocyte differentiation created_by: bc creation_date: 2016-06-02T07:20:09Z @@ -135001,9 +134509,9 @@ is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1905207 ! regulation of cardiocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035051 ! cardiocyte differentiation -relationship: positively_regulates GO:0032501 ! multicellular organismal process -relationship: positively_regulates GO:0035051 ! cardiocyte differentiation +intersection_of: RO:0002213 GO:0035051 ! positively regulates cardiocyte differentiation +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process +relationship: RO:0002213 GO:0035051 ! positively regulates cardiocyte differentiation created_by: bc creation_date: 2016-06-02T07:20:16Z @@ -135016,8 +134524,8 @@ is_a: GO:0010948 ! negative regulation of cell cycle process is_a: GO:1902340 ! negative regulation of chromosome condensation is_a: GO:1903379 ! regulation of mitotic chromosome condensation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007076 ! mitotic chromosome condensation -relationship: negatively_regulates GO:0007076 ! mitotic chromosome condensation +intersection_of: RO:0002212 GO:0007076 ! negatively regulates mitotic chromosome condensation +relationship: RO:0002212 GO:0007076 ! negatively regulates mitotic chromosome condensation created_by: vw creation_date: 2016-06-03T08:41:08Z @@ -135029,8 +134537,8 @@ def: "Any process that modulates the frequency, rate or extent of RNA binding." subset: gocheck_do_not_annotate is_a: GO:0051098 ! regulation of binding intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003723 ! RNA binding -relationship: regulates GO:0003723 ! RNA binding +intersection_of: RO:0002211 GO:0003723 ! regulates (processual) RNA binding +relationship: RO:0002211 GO:0003723 ! regulates (processual) RNA binding created_by: bf creation_date: 2016-06-06T10:20:56Z @@ -135047,8 +134555,8 @@ synonym: "inhibition of RNA binding" NARROW [GOC:TermGenie] is_a: GO:0051100 ! negative regulation of binding is_a: GO:1905214 ! regulation of RNA binding intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003723 ! RNA binding -relationship: negatively_regulates GO:0003723 ! RNA binding +intersection_of: RO:0002212 GO:0003723 ! negatively regulates RNA binding +relationship: RO:0002212 GO:0003723 ! negatively regulates RNA binding created_by: bf creation_date: 2016-06-06T10:21:04Z @@ -135065,8 +134573,8 @@ synonym: "upregulation of RNA binding" EXACT [GOC:TermGenie] is_a: GO:0051099 ! positive regulation of binding is_a: GO:1905214 ! regulation of RNA binding intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003723 ! RNA binding -relationship: positively_regulates GO:0003723 ! RNA binding +intersection_of: RO:0002213 GO:0003723 ! positively regulates RNA binding +relationship: RO:0002213 GO:0003723 ! positively regulates RNA binding created_by: bf creation_date: 2016-06-06T10:21:12Z @@ -135079,9 +134587,9 @@ synonym: "regulation of platelet extrusion" EXACT [GOC:TermGenie] is_a: GO:0022604 ! regulation of cell morphogenesis is_a: GO:0045637 ! regulation of myeloid cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030220 ! platelet formation -relationship: regulates GO:0000902 ! cell morphogenesis -relationship: regulates GO:0030220 ! platelet formation +intersection_of: RO:0002211 GO:0030220 ! regulates (processual) platelet formation +relationship: RO:0002211 GO:0000902 ! regulates (processual) cell morphogenesis +relationship: RO:0002211 GO:0030220 ! regulates (processual) platelet formation created_by: sl creation_date: 2016-06-06T22:15:46Z @@ -135102,8 +134610,8 @@ synonym: "negative regulation of platelet extrusion" EXACT [GOC:TermGenie] is_a: GO:0045638 ! negative regulation of myeloid cell differentiation is_a: GO:1905219 ! regulation of platelet formation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030220 ! platelet formation -relationship: negatively_regulates GO:0030220 ! platelet formation +intersection_of: RO:0002212 GO:0030220 ! negatively regulates platelet formation +relationship: RO:0002212 GO:0030220 ! negatively regulates platelet formation created_by: sl creation_date: 2016-06-06T22:15:54Z @@ -135125,9 +134633,9 @@ is_a: GO:0010770 ! positive regulation of cell morphogenesis is_a: GO:0045639 ! positive regulation of myeloid cell differentiation is_a: GO:1905219 ! regulation of platelet formation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030220 ! platelet formation -relationship: positively_regulates GO:0000902 ! cell morphogenesis -relationship: positively_regulates GO:0030220 ! platelet formation +intersection_of: RO:0002213 GO:0030220 ! positively regulates platelet formation +relationship: RO:0002213 GO:0000902 ! positively regulates cell morphogenesis +relationship: RO:0002213 GO:0030220 ! positively regulates platelet formation created_by: sl creation_date: 2016-06-06T22:16:02Z @@ -135144,9 +134652,9 @@ synonym: "canalis atrioventricularis morphogenesis" RELATED [GOC:TermGenie] synonym: "ependymal canal morphogenesis" RELATED [GOC:TermGenie] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002087 ! atrioventricular canal +intersection_of: RO:0002298 UBERON:0002087 ! results in morphogenesis of atrioventricular canal relationship: part_of GO:0036302 ! atrioventricular canal development -relationship: results_in_morphogenesis_of UBERON:0002087 ! atrioventricular canal +relationship: RO:0002298 UBERON:0002087 ! results in morphogenesis of atrioventricular canal created_by: rl creation_date: 2016-06-07T09:09:51Z @@ -135161,8 +134669,8 @@ synonym: "visceral serous pericardium of heart morphogenesis" EXACT [GOC:TermGen synonym: "visceral serous pericardium proper morphogenesis" EXACT [GOC:TermGenie] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0002348 ! epicardium -relationship: results_in_morphogenesis_of UBERON:0002348 ! epicardium +intersection_of: RO:0002298 UBERON:0002348 ! results in morphogenesis of epicardium +relationship: RO:0002298 UBERON:0002348 ! results in morphogenesis of epicardium created_by: rl creation_date: 2016-06-07T10:02:32Z @@ -135172,12 +134680,12 @@ name: cellular response to L-glutamate namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-glutamate(1-) stimulus." [GO_REF:0000071, GOC:TermGenie, PMID:25962137] synonym: "cellular response to L-glutamate(1-)" RELATED [] -is_a: GO:0071417 ! cellular response to organonitrogen compound +is_a: GO:1901699 ! cellular response to nitrogen compound is_a: GO:1901701 ! cellular response to oxygen-containing compound is_a: GO:1902065 ! response to L-glutamate intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:29985 ! L-glutamate(1-) -relationship: has_primary_input CHEBI:29985 ! L-glutamate(1-) +intersection_of: RO:0004009 CHEBI:29985 ! has primary input L-glutamate(1-) +relationship: RO:0004009 CHEBI:29985 ! has primary input L-glutamate(1-) created_by: sl creation_date: 2016-06-07T17:30:08Z @@ -135212,8 +134720,8 @@ synonym: "negative regulation of establishment or maintenance of chromatin archi is_a: GO:0051129 ! negative regulation of cellular component organization is_a: GO:1902275 ! regulation of chromatin organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006325 ! chromatin organization -relationship: negatively_regulates GO:0006325 ! chromatin organization +intersection_of: RO:0002212 GO:0006325 ! negatively regulates chromatin organization +relationship: RO:0002212 GO:0006325 ! negatively regulates chromatin organization property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22766" xsd:anyURI created_by: pr creation_date: 2016-06-15T20:14:47Z @@ -135250,9 +134758,9 @@ synonym: "upregulation of establishment or maintenance of chromatin architecture is_a: GO:1902275 ! regulation of chromatin organization is_a: GO:2001252 ! positive regulation of chromosome organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006325 ! chromatin organization -relationship: positively_regulates GO:0006325 ! chromatin organization -relationship: positively_regulates GO:0051276 ! chromosome organization +intersection_of: RO:0002213 GO:0006325 ! positively regulates chromatin organization +relationship: RO:0002213 GO:0006325 ! positively regulates chromatin organization +relationship: RO:0002213 GO:0051276 ! positively regulates chromosome organization property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22766" xsd:anyURI created_by: pr creation_date: 2016-06-15T20:14:56Z @@ -135266,8 +134774,8 @@ comment: An example of this is MMRN2 in human (Q9H8L6) in PMID:25745997 (inferre is_a: GO:1905330 ! regulation of morphogenesis of an epithelium is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072175 ! epithelial tube formation -relationship: regulates GO:0072175 ! epithelial tube formation +intersection_of: RO:0002211 GO:0072175 ! regulates (processual) epithelial tube formation +relationship: RO:0002211 GO:0072175 ! regulates (processual) epithelial tube formation created_by: bhm creation_date: 2016-06-20T09:35:41Z @@ -135285,8 +134793,8 @@ is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1905276 ! regulation of epithelial tube formation is_a: GO:1905331 ! negative regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0072175 ! epithelial tube formation -relationship: negatively_regulates GO:0072175 ! epithelial tube formation +intersection_of: RO:0002212 GO:0072175 ! negatively regulates epithelial tube formation +relationship: RO:0002212 GO:0072175 ! negatively regulates epithelial tube formation created_by: bhm creation_date: 2016-06-20T09:35:49Z @@ -135304,8 +134812,8 @@ is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1905276 ! regulation of epithelial tube formation is_a: GO:1905332 ! positive regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0072175 ! epithelial tube formation -relationship: positively_regulates GO:0072175 ! epithelial tube formation +intersection_of: RO:0002213 GO:0072175 ! positively regulates epithelial tube formation +relationship: RO:0002213 GO:0072175 ! positively regulates epithelial tube formation created_by: bhm creation_date: 2016-06-20T09:35:57Z @@ -135323,8 +134831,8 @@ synonym: "coronary tendon morphogenesis" RELATED [GOC:TermGenie] synonym: "Lower's ring morphogenesis" RELATED [GOC:TermGenie] is_a: GO:0048729 ! tissue morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0006008 ! fibrous ring of heart -relationship: results_in_morphogenesis_of UBERON:0006008 ! fibrous ring of heart +intersection_of: RO:0002298 UBERON:0006008 ! results in morphogenesis of fibrous ring of heart +relationship: RO:0002298 UBERON:0006008 ! results in morphogenesis of fibrous ring of heart created_by: rl creation_date: 2016-06-21T09:46:54Z @@ -135340,8 +134848,8 @@ synonym: "VSMC apoptosis" NARROW [GOC:TermGenie] synonym: "VSMC apoptotic process" EXACT [GOC:TermGenie] is_a: GO:0034390 ! smooth muscle cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0000359 ! vascular associated smooth muscle cell -relationship: occurs_in CL:0000359 ! vascular associated smooth muscle cell +intersection_of: BFO:0000066 CL:0000359 ! occurs in vascular associated smooth muscle cell +relationship: BFO:0000066 CL:0000359 ! occurs in vascular associated smooth muscle cell created_by: rph creation_date: 2016-06-23T13:24:20Z @@ -135352,8 +134860,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of neural crest cell differentiation." [GO_REF:0000058, GOC:BHF, GOC:rl, GOC:TermGenie, PMID:15073157] is_a: GO:2000736 ! regulation of stem cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0014033 ! neural crest cell differentiation -relationship: regulates GO:0014033 ! neural crest cell differentiation +intersection_of: RO:0002211 GO:0014033 ! regulates (processual) neural crest cell differentiation +relationship: RO:0002211 GO:0014033 ! regulates (processual) neural crest cell differentiation created_by: rl creation_date: 2016-06-28T15:02:01Z @@ -135370,9 +134878,9 @@ is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1905292 ! regulation of neural crest cell differentiation is_a: GO:2000737 ! negative regulation of stem cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0014033 ! neural crest cell differentiation -relationship: negatively_regulates GO:0014033 ! neural crest cell differentiation -relationship: negatively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002212 GO:0014033 ! negatively regulates neural crest cell differentiation +relationship: RO:0002212 GO:0014033 ! negatively regulates neural crest cell differentiation +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process created_by: rl creation_date: 2016-06-28T15:02:09Z @@ -135389,9 +134897,9 @@ is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1905292 ! regulation of neural crest cell differentiation is_a: GO:2000738 ! positive regulation of stem cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0014033 ! neural crest cell differentiation -relationship: positively_regulates GO:0014033 ! neural crest cell differentiation -relationship: positively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002213 GO:0014033 ! positively regulates neural crest cell differentiation +relationship: RO:0002213 GO:0014033 ! positively regulates neural crest cell differentiation +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process created_by: rl creation_date: 2016-06-28T15:02:16Z @@ -135403,9 +134911,9 @@ def: "Any process that modulates the frequency, rate or extent of intestinal epi is_a: GO:0030856 ! regulation of epithelial cell differentiation is_a: GO:0060284 ! regulation of cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060576 ! intestinal epithelial cell development -relationship: regulates GO:0030855 ! epithelial cell differentiation -relationship: regulates GO:0060576 ! intestinal epithelial cell development +intersection_of: RO:0002211 GO:0060576 ! regulates (processual) intestinal epithelial cell development +relationship: RO:0002211 GO:0030855 ! regulates (processual) epithelial cell differentiation +relationship: RO:0002211 GO:0060576 ! regulates (processual) intestinal epithelial cell development created_by: rph creation_date: 2016-06-30T11:40:47Z @@ -135423,10 +134931,10 @@ is_a: GO:0030857 ! negative regulation of epithelial cell differentiation is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1905298 ! regulation of intestinal epithelial cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060576 ! intestinal epithelial cell development -relationship: negatively_regulates GO:0030855 ! epithelial cell differentiation -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0060576 ! intestinal epithelial cell development +intersection_of: RO:0002212 GO:0060576 ! negatively regulates intestinal epithelial cell development +relationship: RO:0002212 GO:0030855 ! negatively regulates epithelial cell differentiation +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0060576 ! negatively regulates intestinal epithelial cell development created_by: rph creation_date: 2016-06-30T11:40:55Z @@ -135443,9 +134951,9 @@ is_a: GO:0010720 ! positive regulation of cell development is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1905298 ! regulation of intestinal epithelial cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060576 ! intestinal epithelial cell development -relationship: positively_regulates GO:0032501 ! multicellular organismal process -relationship: positively_regulates GO:0060576 ! intestinal epithelial cell development +intersection_of: RO:0002213 GO:0060576 ! positively regulates intestinal epithelial cell development +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process +relationship: RO:0002213 GO:0060576 ! positively regulates intestinal epithelial cell development created_by: rph creation_date: 2016-06-30T11:41:02Z @@ -135462,9 +134970,9 @@ is_a: GO:0110020 ! regulation of actomyosin structure organization is_a: GO:1902115 ! regulation of organelle assembly is_a: GO:1902903 ! regulation of supramolecular fiber organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0055003 ! cardiac myofibril assembly -relationship: regulates GO:0048468 ! cell development -relationship: regulates GO:0055003 ! cardiac myofibril assembly +intersection_of: RO:0002211 GO:0055003 ! regulates (processual) cardiac myofibril assembly +relationship: RO:0002211 GO:0048468 ! regulates (processual) cell development +relationship: RO:0002211 GO:0055003 ! regulates (processual) cardiac myofibril assembly created_by: rl creation_date: 2016-07-06T10:01:49Z @@ -135498,9 +135006,9 @@ is_a: GO:1902904 ! negative regulation of supramolecular fiber organization is_a: GO:1905304 ! regulation of cardiac myofibril assembly is_a: GO:2000726 ! negative regulation of cardiac muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0055003 ! cardiac myofibril assembly -relationship: negatively_regulates GO:0055003 ! cardiac myofibril assembly -relationship: negatively_regulates GO:0055007 ! cardiac muscle cell differentiation +intersection_of: RO:0002212 GO:0055003 ! negatively regulates cardiac myofibril assembly +relationship: RO:0002212 GO:0055003 ! negatively regulates cardiac myofibril assembly +relationship: RO:0002212 GO:0055007 ! negatively regulates cardiac muscle cell differentiation created_by: rl creation_date: 2016-07-06T10:01:58Z @@ -135534,8 +135042,8 @@ is_a: GO:1902117 ! positive regulation of organelle assembly is_a: GO:1902905 ! positive regulation of supramolecular fiber organization is_a: GO:1905304 ! regulation of cardiac myofibril assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0055003 ! cardiac myofibril assembly -relationship: positively_regulates GO:0055003 ! cardiac myofibril assembly +intersection_of: RO:0002213 GO:0055003 ! positively regulates cardiac myofibril assembly +relationship: RO:0002213 GO:0055003 ! positively regulates cardiac myofibril assembly created_by: rl creation_date: 2016-07-06T10:02:07Z @@ -135546,8 +135054,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cardiac neural crest cell migration involved in outflow tract morphogenesis." [GO_REF:0000058, GOC:BHF, GOC:rl, GOC:TermGenie, PMID:17628518] is_a: GO:0030334 ! regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003253 ! cardiac neural crest cell migration involved in outflow tract morphogenesis -relationship: regulates GO:0003253 ! cardiac neural crest cell migration involved in outflow tract morphogenesis +intersection_of: RO:0002211 GO:0003253 ! regulates (processual) cardiac neural crest cell migration involved in outflow tract morphogenesis +relationship: RO:0002211 GO:0003253 ! regulates (processual) cardiac neural crest cell migration involved in outflow tract morphogenesis created_by: rl creation_date: 2016-07-11T17:34:26Z @@ -135563,8 +135071,8 @@ synonym: "inhibition of cardiac neural crest cell migration involved in outflow is_a: GO:0030336 ! negative regulation of cell migration is_a: GO:1905310 ! regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003253 ! cardiac neural crest cell migration involved in outflow tract morphogenesis -relationship: negatively_regulates GO:0003253 ! cardiac neural crest cell migration involved in outflow tract morphogenesis +intersection_of: RO:0002212 GO:0003253 ! negatively regulates cardiac neural crest cell migration involved in outflow tract morphogenesis +relationship: RO:0002212 GO:0003253 ! negatively regulates cardiac neural crest cell migration involved in outflow tract morphogenesis created_by: rl creation_date: 2016-07-11T17:34:35Z @@ -135580,8 +135088,8 @@ synonym: "upregulation of cardiac neural crest cell migration involved in outflo is_a: GO:0030335 ! positive regulation of cell migration is_a: GO:1905310 ! regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003253 ! cardiac neural crest cell migration involved in outflow tract morphogenesis -relationship: positively_regulates GO:0003253 ! cardiac neural crest cell migration involved in outflow tract morphogenesis +intersection_of: RO:0002213 GO:0003253 ! positively regulates cardiac neural crest cell migration involved in outflow tract morphogenesis +relationship: RO:0002213 GO:0003253 ! positively regulates cardiac neural crest cell migration involved in outflow tract morphogenesis created_by: rl creation_date: 2016-07-11T17:34:43Z @@ -135594,8 +135102,8 @@ synonym: "semilunar valve development" EXACT [GOC:TermGenie] synonym: "semilunar valves development" EXACT [GOC:TermGenie] is_a: GO:0003170 ! heart valve development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0005623 ! semi-lunar valve -relationship: results_in_development_of UBERON:0005623 ! semi-lunar valve +intersection_of: RO:0002296 UBERON:0005623 ! results in development of semi-lunar valve +relationship: RO:0002296 UBERON:0005623 ! results in development of semi-lunar valve created_by: rl creation_date: 2016-07-11T17:50:44Z @@ -135619,8 +135127,8 @@ def: "The developmental process by which a superior endocardial cushion is gener synonym: "dorsal endocardial cushion morphogenesis" EXACT [GOC:TermGenie] is_a: GO:0003203 ! endocardial cushion morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0036067 ! superior endocardial cushion -relationship: results_in_morphogenesis_of UBERON:0036067 ! superior endocardial cushion +intersection_of: RO:0002298 UBERON:0036067 ! results in morphogenesis of superior endocardial cushion +relationship: RO:0002298 UBERON:0036067 ! results in morphogenesis of superior endocardial cushion created_by: rl creation_date: 2016-07-12T14:08:35Z @@ -135632,8 +135140,8 @@ def: "The developmental process by which an inferior endocardial cushion is gene synonym: "ventral endocardial cushion morphogenesis" EXACT [GOC:TermGenie] is_a: GO:0003203 ! endocardial cushion morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0036066 ! inferior endocardial cushion -relationship: results_in_morphogenesis_of UBERON:0036066 ! inferior endocardial cushion +intersection_of: RO:0002298 UBERON:0036066 ! results in morphogenesis of inferior endocardial cushion +relationship: RO:0002298 UBERON:0036066 ! results in morphogenesis of inferior endocardial cushion created_by: rl creation_date: 2016-07-12T14:14:56Z @@ -135644,8 +135152,8 @@ namespace: biological_process def: "The orderly movement of a mesenchymal stem cell from one site to another." [GO_REF:0000091, GOC:TermGenie, PMID:24924806, PMID:25181476] is_a: GO:0016477 ! cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000134 ! mesenchymal stem cell -relationship: results_in_movement_of CL:0000134 ! mesenchymal stem cell +intersection_of: RO:0002565 CL:0000134 ! results in movement of mesenchymal stem cell +relationship: RO:0002565 CL:0000134 ! results in movement of mesenchymal stem cell created_by: sl creation_date: 2016-07-14T17:13:02Z @@ -135656,8 +135164,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of mesenchymal stem cell migration." [GO_REF:0000058, GOC:TermGenie, PMID:26846297] is_a: GO:0030334 ! regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1905319 ! mesenchymal stem cell migration -relationship: regulates GO:1905319 ! mesenchymal stem cell migration +intersection_of: RO:0002211 GO:1905319 ! regulates (processual) mesenchymal stem cell migration +relationship: RO:0002211 GO:1905319 ! regulates (processual) mesenchymal stem cell migration created_by: sl creation_date: 2016-07-15T22:19:14Z @@ -135673,8 +135181,8 @@ synonym: "inhibition of mesenchymal stem cell migration" NARROW [GOC:TermGenie] is_a: GO:0030336 ! negative regulation of cell migration is_a: GO:1905320 ! regulation of mesenchymal stem cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1905319 ! mesenchymal stem cell migration -relationship: negatively_regulates GO:1905319 ! mesenchymal stem cell migration +intersection_of: RO:0002212 GO:1905319 ! negatively regulates mesenchymal stem cell migration +relationship: RO:0002212 GO:1905319 ! negatively regulates mesenchymal stem cell migration created_by: sl creation_date: 2016-07-15T22:19:22Z @@ -135690,8 +135198,8 @@ synonym: "upregulation of mesenchymal stem cell migration" EXACT [GOC:TermGenie] is_a: GO:0030335 ! positive regulation of cell migration is_a: GO:1905320 ! regulation of mesenchymal stem cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1905319 ! mesenchymal stem cell migration -relationship: positively_regulates GO:1905319 ! mesenchymal stem cell migration +intersection_of: RO:0002213 GO:1905319 ! positively regulates mesenchymal stem cell migration +relationship: RO:0002213 GO:1905319 ! positively regulates mesenchymal stem cell migration created_by: sl creation_date: 2016-07-15T22:19:29Z @@ -135704,8 +135212,8 @@ synonym: "esophagotracheal septum formation" EXACT [GOC:TermGenie] synonym: "tracheoesophageal ridges formation" RELATED [GOC:TermGenie] is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis -intersection_of: results_in_formation_of_anatomical_entity UBERON:0036070 ! tracheoesophageal septum -relationship: results_in_formation_of_anatomical_entity UBERON:0036070 ! tracheoesophageal septum +intersection_of: RO:0002297 UBERON:0036070 ! results in formation of anatomical entity tracheoesophageal septum +relationship: RO:0002297 UBERON:0036070 ! results in formation of anatomical entity tracheoesophageal septum created_by: tb creation_date: 2016-07-21T18:18:57Z @@ -135718,8 +135226,8 @@ comment: An example of this is MMRN2 in human (Q9H8L6) in PMID:25745997 (inferre synonym: "regulation of epithelium morphogenesis" EXACT [GOC:TermGenie] is_a: GO:0022603 ! regulation of anatomical structure morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002009 ! morphogenesis of an epithelium -relationship: regulates GO:0002009 ! morphogenesis of an epithelium +intersection_of: RO:0002211 GO:0002009 ! regulates (processual) morphogenesis of an epithelium +relationship: RO:0002211 GO:0002009 ! regulates (processual) morphogenesis of an epithelium created_by: bhm creation_date: 2016-07-22T07:13:49Z @@ -135741,8 +135249,8 @@ synonym: "negative regulation of epithelium morphogenesis" EXACT [GOC:TermGenie] is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:1905330 ! regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002009 ! morphogenesis of an epithelium -relationship: negatively_regulates GO:0002009 ! morphogenesis of an epithelium +intersection_of: RO:0002212 GO:0002009 ! negatively regulates morphogenesis of an epithelium +relationship: RO:0002212 GO:0002009 ! negatively regulates morphogenesis of an epithelium created_by: bhm creation_date: 2016-07-22T07:13:57Z @@ -135764,8 +135272,8 @@ synonym: "upregulation of morphogenesis of an epithelium" EXACT [GOC:TermGenie] is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:1905330 ! regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002009 ! morphogenesis of an epithelium -relationship: positively_regulates GO:0002009 ! morphogenesis of an epithelium +intersection_of: RO:0002213 GO:0002009 ! positively regulates morphogenesis of an epithelium +relationship: RO:0002213 GO:0002009 ! positively regulates morphogenesis of an epithelium created_by: bhm creation_date: 2016-07-22T07:14:05Z @@ -135781,9 +135289,9 @@ synonym: "cilium transition zone assembly" EXACT [GOC:TermGenie] synonym: "cilium transition zone formation" EXACT [GOC:TermGenie] is_a: GO:0022607 ! cellular component assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0035869 ! ciliary transition zone +intersection_of: RO:0002588 GO:0035869 ! results in assembly of ciliary transition zone relationship: part_of GO:0060271 ! cilium assembly -relationship: results_in_assembly_of GO:0035869 ! ciliary transition zone +relationship: RO:0002588 GO:0035869 ! results in assembly of ciliary transition zone created_by: pr creation_date: 2016-08-04T14:49:43Z @@ -135794,8 +135302,8 @@ namespace: biological_process def: "The orderly movement of a pericyte cell from one site to another." [GO_REF:0000091, GOC:BHF, GOC:BHF_miRNA, GOC:rph, GOC:TermGenie, PMID:26268439] is_a: GO:0016477 ! cell migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000669 ! pericyte -relationship: results_in_movement_of CL:0000669 ! pericyte +intersection_of: RO:0002565 CL:0000669 ! results in movement of pericyte +relationship: RO:0002565 CL:0000669 ! results in movement of pericyte created_by: rph creation_date: 2016-08-05T12:01:48Z @@ -135810,8 +135318,8 @@ synonym: "protein localization in presynapse" EXACT [GOC:TermGenie] synonym: "recruitment of presynaptic proteins" EXACT [PMID:24449494] is_a: GO:0035418 ! protein localization to synapse intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0098793 ! presynapse -relationship: has_target_end_location GO:0098793 ! presynapse +intersection_of: RO:0002339 GO:0098793 ! has target end location presynapse +relationship: RO:0002339 GO:0098793 ! has target end location presynapse created_by: dos creation_date: 2016-08-18T14:42:59Z @@ -135826,8 +135334,8 @@ synonym: "regulation of protein localization in presynapse" EXACT [GOC:TermGenie synonym: "regulation of recruitment of presynaptic proteins" EXACT [GOC:TermGenie] is_a: GO:1902473 ! regulation of protein localization to synapse intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1905383 ! protein localization to presynapse -relationship: regulates GO:1905383 ! protein localization to presynapse +intersection_of: RO:0002211 GO:1905383 ! regulates (processual) protein localization to presynapse +relationship: RO:0002211 GO:1905383 ! regulates (processual) protein localization to presynapse created_by: dos creation_date: 2016-08-18T14:56:00Z @@ -135863,8 +135371,8 @@ synonym: "negative regulation of recruitment of presynaptic proteins" EXACT [GOC is_a: GO:1903828 ! negative regulation of protein localization is_a: GO:1905384 ! regulation of protein localization to presynapse intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1905383 ! protein localization to presynapse -relationship: negatively_regulates GO:1905383 ! protein localization to presynapse +intersection_of: RO:0002212 GO:1905383 ! negatively regulates protein localization to presynapse +relationship: RO:0002212 GO:1905383 ! negatively regulates protein localization to presynapse created_by: dos creation_date: 2016-08-18T14:56:08Z @@ -135900,8 +135408,8 @@ synonym: "upregulation of recruitment of presynaptic proteins" EXACT [GOC:TermGe is_a: GO:1902474 ! positive regulation of protein localization to synapse is_a: GO:1905384 ! regulation of protein localization to presynapse intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1905383 ! protein localization to presynapse -relationship: positively_regulates GO:1905383 ! protein localization to presynapse +intersection_of: RO:0002213 GO:1905383 ! positively regulates protein localization to presynapse +relationship: RO:0002213 GO:1905383 ! positively regulates protein localization to presynapse created_by: dos creation_date: 2016-08-18T14:56:21Z @@ -135913,8 +135421,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to beta,beta-carotene" EXACT [] is_a: GO:0033993 ! response to lipid intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:17579 ! beta-carotene -relationship: has_primary_input CHEBI:17579 ! beta-carotene +intersection_of: RO:0004009 CHEBI:17579 ! has primary input beta-carotene +relationship: RO:0004009 CHEBI:17579 ! has primary input beta-carotene created_by: sl creation_date: 2016-08-18T16:18:24Z @@ -135927,8 +135435,8 @@ synonym: "cellular response to beta,beta-carotene" EXACT [] is_a: GO:0071396 ! cellular response to lipid is_a: GO:1905387 ! response to beta-carotene intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:17579 ! beta-carotene -relationship: has_primary_input CHEBI:17579 ! beta-carotene +intersection_of: RO:0004009 CHEBI:17579 ! has primary input beta-carotene +relationship: RO:0004009 CHEBI:17579 ! has primary input beta-carotene created_by: sl creation_date: 2016-08-18T16:18:31Z @@ -135940,8 +135448,8 @@ def: "Any process that modulates the frequency, rate or extent of retrograde tra synonym: "regulation of neuropeptide-mediated retrograde trans-synaptic signaling" RELATED [GOC:bf] is_a: GO:0099177 ! regulation of trans-synaptic signaling intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0099082 ! retrograde trans-synaptic signaling by neuropeptide -relationship: regulates GO:0099082 ! retrograde trans-synaptic signaling by neuropeptide +intersection_of: RO:0002211 GO:0099082 ! regulates (processual) retrograde trans-synaptic signaling by neuropeptide +relationship: RO:0002211 GO:0099082 ! regulates (processual) retrograde trans-synaptic signaling by neuropeptide created_by: bf creation_date: 2016-09-14T10:56:47Z @@ -135960,8 +135468,8 @@ is_a: GO:0010648 ! negative regulation of cell communication is_a: GO:0023057 ! negative regulation of signaling is_a: GO:1905432 ! regulation of retrograde trans-synaptic signaling by neuropeptide intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0099082 ! retrograde trans-synaptic signaling by neuropeptide -relationship: negatively_regulates GO:0099082 ! retrograde trans-synaptic signaling by neuropeptide +intersection_of: RO:0002212 GO:0099082 ! negatively regulates retrograde trans-synaptic signaling by neuropeptide +relationship: RO:0002212 GO:0099082 ! negatively regulates retrograde trans-synaptic signaling by neuropeptide created_by: bf creation_date: 2016-09-14T10:56:55Z @@ -135979,8 +135487,8 @@ is_a: GO:0010647 ! positive regulation of cell communication is_a: GO:0023056 ! positive regulation of signaling is_a: GO:1905432 ! regulation of retrograde trans-synaptic signaling by neuropeptide intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0099082 ! retrograde trans-synaptic signaling by neuropeptide -relationship: positively_regulates GO:0099082 ! retrograde trans-synaptic signaling by neuropeptide +intersection_of: RO:0002213 GO:0099082 ! positively regulates retrograde trans-synaptic signaling by neuropeptide +relationship: RO:0002213 GO:0099082 ! positively regulates retrograde trans-synaptic signaling by neuropeptide created_by: bf creation_date: 2016-09-14T10:57:02Z @@ -135991,8 +135499,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of myeloid progenitor cell differentiation." [GO_REF:0000058, GOC:TermGenie, PMID:27010503] is_a: GO:1901532 ! regulation of hematopoietic progenitor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002318 ! myeloid progenitor cell differentiation -relationship: regulates GO:0002318 ! myeloid progenitor cell differentiation +intersection_of: RO:0002211 GO:0002318 ! regulates (processual) myeloid progenitor cell differentiation +relationship: RO:0002211 GO:0002318 ! regulates (processual) myeloid progenitor cell differentiation created_by: rz creation_date: 2016-09-16T12:32:18Z @@ -136008,8 +135516,8 @@ synonym: "inhibition of myeloid progenitor cell differentiation" NARROW [GOC:Ter is_a: GO:1901533 ! negative regulation of hematopoietic progenitor cell differentiation is_a: GO:1905453 ! regulation of myeloid progenitor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002318 ! myeloid progenitor cell differentiation -relationship: negatively_regulates GO:0002318 ! myeloid progenitor cell differentiation +intersection_of: RO:0002212 GO:0002318 ! negatively regulates myeloid progenitor cell differentiation +relationship: RO:0002212 GO:0002318 ! negatively regulates myeloid progenitor cell differentiation created_by: rz creation_date: 2016-09-16T12:32:26Z @@ -136025,8 +135533,8 @@ synonym: "upregulation of myeloid progenitor cell differentiation" EXACT [GOC:Te is_a: GO:1901534 ! positive regulation of hematopoietic progenitor cell differentiation is_a: GO:1905453 ! regulation of myeloid progenitor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002318 ! myeloid progenitor cell differentiation -relationship: positively_regulates GO:0002318 ! myeloid progenitor cell differentiation +intersection_of: RO:0002213 GO:0002318 ! positively regulates myeloid progenitor cell differentiation +relationship: RO:0002213 GO:0002318 ! positively regulates myeloid progenitor cell differentiation created_by: rz creation_date: 2016-09-16T12:32:33Z @@ -136037,8 +135545,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of lymphoid progenitor cell differentiation." [GO_REF:0000058, GOC:TermGenie, PMID:27010503] is_a: GO:1901532 ! regulation of hematopoietic progenitor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002320 ! lymphoid progenitor cell differentiation -relationship: regulates GO:0002320 ! lymphoid progenitor cell differentiation +intersection_of: RO:0002211 GO:0002320 ! regulates (processual) lymphoid progenitor cell differentiation +relationship: RO:0002211 GO:0002320 ! regulates (processual) lymphoid progenitor cell differentiation created_by: rz creation_date: 2016-09-16T12:32:40Z @@ -136054,8 +135562,8 @@ synonym: "inhibition of lymphoid progenitor cell differentiation" NARROW [GOC:Te is_a: GO:1901533 ! negative regulation of hematopoietic progenitor cell differentiation is_a: GO:1905456 ! regulation of lymphoid progenitor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002320 ! lymphoid progenitor cell differentiation -relationship: negatively_regulates GO:0002320 ! lymphoid progenitor cell differentiation +intersection_of: RO:0002212 GO:0002320 ! negatively regulates lymphoid progenitor cell differentiation +relationship: RO:0002212 GO:0002320 ! negatively regulates lymphoid progenitor cell differentiation created_by: rz creation_date: 2016-09-16T12:32:48Z @@ -136071,8 +135579,8 @@ synonym: "upregulation of lymphoid progenitor cell differentiation" EXACT [GOC:T is_a: GO:1901534 ! positive regulation of hematopoietic progenitor cell differentiation is_a: GO:1905456 ! regulation of lymphoid progenitor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002320 ! lymphoid progenitor cell differentiation -relationship: positively_regulates GO:0002320 ! lymphoid progenitor cell differentiation +intersection_of: RO:0002213 GO:0002320 ! positively regulates lymphoid progenitor cell differentiation +relationship: RO:0002213 GO:0002320 ! positively regulates lymphoid progenitor cell differentiation created_by: rz creation_date: 2016-09-16T12:32:55Z @@ -136088,8 +135596,8 @@ synonym: "regulation of VSMC apoptosis" NARROW [GOC:TermGenie] synonym: "regulation of VSMC apoptotic process" EXACT [GOC:TermGenie] is_a: GO:0034391 ! regulation of smooth muscle cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1905288 ! vascular associated smooth muscle cell apoptotic process -relationship: regulates GO:1905288 ! vascular associated smooth muscle cell apoptotic process +intersection_of: RO:0002211 GO:1905288 ! regulates (processual) vascular associated smooth muscle cell apoptotic process +relationship: RO:0002211 GO:1905288 ! regulates (processual) vascular associated smooth muscle cell apoptotic process created_by: rph creation_date: 2016-09-19T11:33:54Z @@ -136130,8 +135638,8 @@ synonym: "negative regulation of VSMC apoptotic process" EXACT [GOC:TermGenie] is_a: GO:0034392 ! negative regulation of smooth muscle cell apoptotic process is_a: GO:1905459 ! regulation of vascular associated smooth muscle cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1905288 ! vascular associated smooth muscle cell apoptotic process -relationship: negatively_regulates GO:1905288 ! vascular associated smooth muscle cell apoptotic process +intersection_of: RO:0002212 GO:1905288 ! negatively regulates vascular associated smooth muscle cell apoptotic process +relationship: RO:0002212 GO:1905288 ! negatively regulates vascular associated smooth muscle cell apoptotic process created_by: rph creation_date: 2016-09-19T11:34:03Z @@ -136172,8 +135680,8 @@ synonym: "upregulation of VSMC apoptotic process" EXACT [GOC:TermGenie] is_a: GO:0034393 ! positive regulation of smooth muscle cell apoptotic process is_a: GO:1905459 ! regulation of vascular associated smooth muscle cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1905288 ! vascular associated smooth muscle cell apoptotic process -relationship: positively_regulates GO:1905288 ! vascular associated smooth muscle cell apoptotic process +intersection_of: RO:0002213 GO:1905288 ! positively regulates vascular associated smooth muscle cell apoptotic process +relationship: RO:0002213 GO:1905288 ! positively regulates vascular associated smooth muscle cell apoptotic process created_by: rph creation_date: 2016-09-19T11:34:10Z @@ -136186,8 +135694,8 @@ synonym: "regulation of protein localisation in membrane" EXACT [GOC:TermGenie] synonym: "regulation of protein localization in membrane" EXACT [GOC:TermGenie] is_a: GO:0032880 ! regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072657 ! protein localization to membrane -relationship: regulates GO:0072657 ! protein localization to membrane +intersection_of: RO:0002211 GO:0072657 ! regulates (processual) protein localization to membrane +relationship: RO:0002211 GO:0072657 ! regulates (processual) protein localization to membrane created_by: bc creation_date: 2016-09-21T16:20:03Z @@ -136213,8 +135721,8 @@ synonym: "negative regulation of protein localization in membrane" EXACT [GOC:Te is_a: GO:1903828 ! negative regulation of protein localization is_a: GO:1905475 ! regulation of protein localization to membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0072657 ! protein localization to membrane -relationship: negatively_regulates GO:0072657 ! protein localization to membrane +intersection_of: RO:0002212 GO:0072657 ! negatively regulates protein localization to membrane +relationship: RO:0002212 GO:0072657 ! negatively regulates protein localization to membrane created_by: bc creation_date: 2016-09-21T16:20:10Z @@ -136240,8 +135748,8 @@ synonym: "upregulation of protein localization to membrane" EXACT [GOC:TermGenie is_a: GO:1903829 ! positive regulation of protein localization is_a: GO:1905475 ! regulation of protein localization to membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0072657 ! protein localization to membrane -relationship: positively_regulates GO:0072657 ! protein localization to membrane +intersection_of: RO:0002213 GO:0072657 ! positively regulates protein localization to membrane +relationship: RO:0002213 GO:0072657 ! positively regulates protein localization to membrane created_by: bc creation_date: 2016-09-21T16:20:18Z @@ -136252,8 +135760,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of motor neuron migration." [GO_REF:0000058, GOC:TermGenie, PMID:16516839] is_a: GO:2001222 ! regulation of neuron migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0097475 ! motor neuron migration -relationship: regulates GO:0097475 ! motor neuron migration +intersection_of: RO:0002211 GO:0097475 ! regulates (processual) motor neuron migration +relationship: RO:0002211 GO:0097475 ! regulates (processual) motor neuron migration created_by: hbye creation_date: 2016-09-23T12:49:54Z @@ -136269,8 +135777,8 @@ synonym: "inhibition of motor neuron migration" NARROW [GOC:TermGenie] is_a: GO:1905483 ! regulation of motor neuron migration is_a: GO:2001223 ! negative regulation of neuron migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0097475 ! motor neuron migration -relationship: negatively_regulates GO:0097475 ! motor neuron migration +intersection_of: RO:0002212 GO:0097475 ! negatively regulates motor neuron migration +relationship: RO:0002212 GO:0097475 ! negatively regulates motor neuron migration created_by: hbye creation_date: 2016-09-23T12:50:11Z @@ -136286,8 +135794,8 @@ synonym: "upregulation of motor neuron migration" EXACT [GOC:TermGenie] is_a: GO:1905483 ! regulation of motor neuron migration is_a: GO:2001224 ! positive regulation of neuron migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0097475 ! motor neuron migration -relationship: positively_regulates GO:0097475 ! motor neuron migration +intersection_of: RO:0002213 GO:0097475 ! positively regulates motor neuron migration +relationship: RO:0002213 GO:0097475 ! positively regulates motor neuron migration created_by: hbye creation_date: 2016-09-23T12:50:19Z @@ -136304,8 +135812,8 @@ is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:2000172 ! regulation of branching morphogenesis of a nerve intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048755 ! branching morphogenesis of a nerve -relationship: positively_regulates GO:0048755 ! branching morphogenesis of a nerve +intersection_of: RO:0002213 GO:0048755 ! positively regulates branching morphogenesis of a nerve +relationship: RO:0002213 GO:0048755 ! positively regulates branching morphogenesis of a nerve created_by: hbye creation_date: 2016-09-23T14:11:52Z @@ -136322,8 +135830,8 @@ synonym: "regulation of nodal cilium assembly" RELATED [GOC:TermGenie] synonym: "regulation of nodal cilium formation" RELATED [GOC:TermGenie] is_a: GO:1902017 ! regulation of cilium assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0044458 ! motile cilium assembly -relationship: regulates GO:0044458 ! motile cilium assembly +intersection_of: RO:0002211 GO:0044458 ! regulates (processual) motile cilium assembly +relationship: RO:0002211 GO:0044458 ! regulates (processual) motile cilium assembly created_by: krc creation_date: 2016-09-27T18:27:47Z @@ -136365,8 +135873,8 @@ synonym: "negative regulation of nodal cilium formation" RELATED [GOC:TermGenie] is_a: GO:1902018 ! negative regulation of cilium assembly is_a: GO:1905503 ! regulation of motile cilium assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0044458 ! motile cilium assembly -relationship: negatively_regulates GO:0044458 ! motile cilium assembly +intersection_of: RO:0002212 GO:0044458 ! negatively regulates motile cilium assembly +relationship: RO:0002212 GO:0044458 ! negatively regulates motile cilium assembly created_by: krc creation_date: 2016-09-27T18:27:55Z @@ -136408,8 +135916,8 @@ synonym: "upregulation of nodal cilium formation" RELATED [GOC:TermGenie] is_a: GO:0045724 ! positive regulation of cilium assembly is_a: GO:1905503 ! regulation of motile cilium assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0044458 ! motile cilium assembly -relationship: positively_regulates GO:0044458 ! motile cilium assembly +intersection_of: RO:0002213 GO:0044458 ! positively regulates motile cilium assembly +relationship: RO:0002213 GO:0044458 ! positively regulates motile cilium assembly created_by: krc creation_date: 2016-09-27T18:28:03Z @@ -136429,8 +135937,8 @@ synonym: "sensory cilium assembly" RELATED [GOC:kmv] synonym: "sensory cilium biogenesis" RELATED [GOC:mah] is_a: GO:0060271 ! cilium assembly intersection_of: GO:0022607 ! cellular component assembly -intersection_of: results_in_assembly_of GO:0097730 ! non-motile cilium -relationship: results_in_assembly_of GO:0097730 ! non-motile cilium +intersection_of: RO:0002588 GO:0097730 ! results in assembly of non-motile cilium +relationship: RO:0002588 GO:0097730 ! results in assembly of non-motile cilium created_by: pr creation_date: 2016-09-30T11:55:15Z @@ -136451,8 +135959,8 @@ synonym: "upregulation of syngamy" EXACT [GOC:TermGenie] is_a: GO:0080154 ! regulation of fertilization is_a: GO:2000243 ! positive regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0009566 ! fertilization -relationship: positively_regulates GO:0009566 ! fertilization +intersection_of: RO:0002213 GO:0009566 ! positively regulates fertilization +relationship: RO:0002213 GO:0009566 ! positively regulates fertilization created_by: pr creation_date: 2016-09-30T14:32:32Z @@ -136464,8 +135972,8 @@ def: "The orderly movement of a macrophage from one site to another." [GO_REF:00 is_a: GO:0071674 ! mononuclear cell migration is_a: GO:0097529 ! myeloid leukocyte migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000235 ! macrophage -relationship: results_in_movement_of CL:0000235 ! macrophage +intersection_of: RO:0002565 CL:0000235 ! results in movement of macrophage +relationship: RO:0002565 CL:0000235 ! results in movement of macrophage created_by: sl creation_date: 2016-09-30T22:17:45Z @@ -136481,8 +135989,8 @@ synonym: "regulation of pre-synaptic active zone formation" EXACT [GOC:TermGenie synonym: "regulation of presynaptic active zone formation" EXACT [GOC:TermGenie] is_a: GO:0051128 ! regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1904071 ! presynaptic active zone assembly -relationship: regulates GO:1904071 ! presynaptic active zone assembly +intersection_of: RO:0002211 GO:1904071 ! regulates (processual) presynaptic active zone assembly +relationship: RO:0002211 GO:1904071 ! regulates (processual) presynaptic active zone assembly created_by: rl creation_date: 2016-10-01T09:37:51Z @@ -136523,9 +136031,9 @@ synonym: "negative regulation of presynaptic active zone formation" EXACT [GOC:T is_a: GO:1905518 ! regulation of presynaptic active zone assembly is_a: GO:1905607 ! negative regulation of presynapse assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1904071 ! presynaptic active zone assembly -relationship: negatively_regulates GO:0099054 ! presynapse assembly -relationship: negatively_regulates GO:1904071 ! presynaptic active zone assembly +intersection_of: RO:0002212 GO:1904071 ! negatively regulates presynaptic active zone assembly +relationship: RO:0002212 GO:0099054 ! negatively regulates presynapse assembly +relationship: RO:0002212 GO:1904071 ! negatively regulates presynaptic active zone assembly created_by: rl creation_date: 2016-10-01T09:38:00Z @@ -136566,9 +136074,9 @@ synonym: "upregulation of presynaptic active zone formation" EXACT [GOC:TermGeni is_a: GO:1905518 ! regulation of presynaptic active zone assembly is_a: GO:1905608 ! positive regulation of presynapse assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1904071 ! presynaptic active zone assembly -relationship: positively_regulates GO:0099054 ! presynapse assembly -relationship: positively_regulates GO:1904071 ! presynaptic active zone assembly +intersection_of: RO:0002213 GO:1904071 ! positively regulates presynaptic active zone assembly +relationship: RO:0002213 GO:0099054 ! positively regulates presynapse assembly +relationship: RO:0002213 GO:1904071 ! positively regulates presynaptic active zone assembly created_by: rl creation_date: 2016-10-01T09:38:07Z @@ -136579,8 +136087,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of macrophage migration." [GO_REF:0000058, GOC:TermGenie, PMID:25749876] is_a: GO:0071675 ! regulation of mononuclear cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1905517 ! macrophage migration -relationship: regulates GO:1905517 ! macrophage migration +intersection_of: RO:0002211 GO:1905517 ! regulates (processual) macrophage migration +relationship: RO:0002211 GO:1905517 ! regulates (processual) macrophage migration created_by: sl creation_date: 2016-10-03T15:29:06Z @@ -136596,8 +136104,8 @@ synonym: "inhibition of macrophage migration" NARROW [GOC:TermGenie] is_a: GO:0071676 ! negative regulation of mononuclear cell migration is_a: GO:1905521 ! regulation of macrophage migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1905517 ! macrophage migration -relationship: negatively_regulates GO:1905517 ! macrophage migration +intersection_of: RO:0002212 GO:1905517 ! negatively regulates macrophage migration +relationship: RO:0002212 GO:1905517 ! negatively regulates macrophage migration created_by: sl creation_date: 2016-10-03T15:29:14Z @@ -136613,8 +136121,8 @@ synonym: "upregulation of macrophage migration" EXACT [GOC:TermGenie] is_a: GO:0071677 ! positive regulation of mononuclear cell migration is_a: GO:1905521 ! regulation of macrophage migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1905517 ! macrophage migration -relationship: positively_regulates GO:1905517 ! macrophage migration +intersection_of: RO:0002213 GO:1905517 ! positively regulates macrophage migration +relationship: RO:0002213 GO:1905517 ! positively regulates macrophage migration created_by: sl creation_date: 2016-10-03T15:29:21Z @@ -136628,8 +136136,8 @@ is_a: GO:0045765 ! regulation of angiogenesis is_a: GO:0060688 ! regulation of morphogenesis of a branching structure is_a: GO:1905330 ! regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001569 ! branching involved in blood vessel morphogenesis -relationship: regulates GO:0001569 ! branching involved in blood vessel morphogenesis +intersection_of: RO:0002211 GO:0001569 ! regulates (processual) branching involved in blood vessel morphogenesis +relationship: RO:0002211 GO:0001569 ! regulates (processual) branching involved in blood vessel morphogenesis created_by: nc creation_date: 2016-10-12T14:19:33Z @@ -136651,8 +136159,8 @@ is_a: GO:0016525 ! negative regulation of angiogenesis is_a: GO:1905331 ! negative regulation of morphogenesis of an epithelium is_a: GO:1905553 ! regulation of blood vessel branching intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001569 ! branching involved in blood vessel morphogenesis -relationship: negatively_regulates GO:0001569 ! branching involved in blood vessel morphogenesis +intersection_of: RO:0002212 GO:0001569 ! negatively regulates branching involved in blood vessel morphogenesis +relationship: RO:0002212 GO:0001569 ! negatively regulates branching involved in blood vessel morphogenesis created_by: nc creation_date: 2016-10-12T14:19:41Z @@ -136674,8 +136182,8 @@ is_a: GO:0045766 ! positive regulation of angiogenesis is_a: GO:1905332 ! positive regulation of morphogenesis of an epithelium is_a: GO:1905553 ! regulation of blood vessel branching intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001569 ! branching involved in blood vessel morphogenesis -relationship: positively_regulates GO:0001569 ! branching involved in blood vessel morphogenesis +intersection_of: RO:0002213 GO:0001569 ! positively regulates branching involved in blood vessel morphogenesis +relationship: RO:0002213 GO:0001569 ! positively regulates branching involved in blood vessel morphogenesis created_by: nc creation_date: 2016-10-12T14:19:49Z @@ -136690,8 +136198,8 @@ synonym: "regulation of mitotic nuclear envelope degradation" EXACT [GOC:TermGen is_a: GO:0010549 ! regulation of membrane disassembly is_a: GO:0010564 ! regulation of cell cycle process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007077 ! mitotic nuclear membrane disassembly -relationship: regulates GO:0007077 ! mitotic nuclear membrane disassembly +intersection_of: RO:0002211 GO:0007077 ! regulates (processual) mitotic nuclear membrane disassembly +relationship: RO:0002211 GO:0007077 ! regulates (processual) mitotic nuclear membrane disassembly created_by: hbye creation_date: 2016-10-14T13:14:57Z @@ -136723,8 +136231,8 @@ is_a: GO:0010948 ! negative regulation of cell cycle process is_a: GO:0051129 ! negative regulation of cellular component organization is_a: GO:1905557 ! regulation of mitotic nuclear envelope disassembly intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007077 ! mitotic nuclear membrane disassembly -relationship: negatively_regulates GO:0007077 ! mitotic nuclear membrane disassembly +intersection_of: RO:0002212 GO:0007077 ! negatively regulates mitotic nuclear membrane disassembly +relationship: RO:0002212 GO:0007077 ! negatively regulates mitotic nuclear membrane disassembly created_by: hbye creation_date: 2016-10-14T13:15:08Z @@ -136756,8 +136264,8 @@ is_a: GO:0051130 ! positive regulation of cellular component organization is_a: GO:0090068 ! positive regulation of cell cycle process is_a: GO:1905557 ! regulation of mitotic nuclear envelope disassembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007077 ! mitotic nuclear membrane disassembly -relationship: positively_regulates GO:0007077 ! mitotic nuclear membrane disassembly +intersection_of: RO:0002213 GO:0007077 ! positively regulates mitotic nuclear membrane disassembly +relationship: RO:0002213 GO:0007077 ! positively regulates mitotic nuclear membrane disassembly created_by: hbye creation_date: 2016-10-14T13:15:17Z @@ -136768,8 +136276,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of vascular endothelial cell proliferation." [GO_REF:0000058, GOC:BHF, GOC:BHF_telomere, GOC:nc, GOC:TermGenie, PMID:23201774] is_a: GO:0001936 ! regulation of endothelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0101023 ! vascular endothelial cell proliferation -relationship: regulates GO:0101023 ! vascular endothelial cell proliferation +intersection_of: RO:0002211 GO:0101023 ! regulates (processual) vascular endothelial cell proliferation +relationship: RO:0002211 GO:0101023 ! regulates (processual) vascular endothelial cell proliferation created_by: nc creation_date: 2016-10-17T09:24:17Z @@ -136785,8 +136293,8 @@ synonym: "inhibition of vascular endothelial cell proliferation" NARROW [GOC:Ter is_a: GO:0001937 ! negative regulation of endothelial cell proliferation is_a: GO:1905562 ! regulation of vascular endothelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0101023 ! vascular endothelial cell proliferation -relationship: negatively_regulates GO:0101023 ! vascular endothelial cell proliferation +intersection_of: RO:0002212 GO:0101023 ! negatively regulates vascular endothelial cell proliferation +relationship: RO:0002212 GO:0101023 ! negatively regulates vascular endothelial cell proliferation created_by: nc creation_date: 2016-10-17T09:24:26Z @@ -136802,8 +136310,8 @@ synonym: "upregulation of vascular endothelial cell proliferation" EXACT [GOC:Te is_a: GO:0001938 ! positive regulation of endothelial cell proliferation is_a: GO:1905562 ! regulation of vascular endothelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0101023 ! vascular endothelial cell proliferation -relationship: positively_regulates GO:0101023 ! vascular endothelial cell proliferation +intersection_of: RO:0002213 GO:0101023 ! positively regulates vascular endothelial cell proliferation +relationship: RO:0002213 GO:0101023 ! positively regulates vascular endothelial cell proliferation created_by: nc creation_date: 2016-10-17T09:24:35Z @@ -136818,9 +136326,9 @@ synonym: "regulation of presynaptic terminal assembly" EXACT [GOC:TermGenie] is_a: GO:0051963 ! regulation of synapse assembly is_a: GO:0099174 ! regulation of presynapse organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0099054 ! presynapse assembly -relationship: regulates GO:0007416 ! synapse assembly -relationship: regulates GO:0099054 ! presynapse assembly +intersection_of: RO:0002211 GO:0099054 ! regulates (processual) presynapse assembly +relationship: RO:0002211 GO:0007416 ! regulates (processual) synapse assembly +relationship: RO:0002211 GO:0099054 ! regulates (processual) presynapse assembly created_by: bc creation_date: 2016-10-27T16:08:13Z @@ -136846,9 +136354,9 @@ synonym: "negative regulation of presynaptic terminal assembly" EXACT [GOC:TermG is_a: GO:0051964 ! negative regulation of synapse assembly is_a: GO:1905606 ! regulation of presynapse assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0099054 ! presynapse assembly -relationship: negatively_regulates GO:0007416 ! synapse assembly -relationship: negatively_regulates GO:0099054 ! presynapse assembly +intersection_of: RO:0002212 GO:0099054 ! negatively regulates presynapse assembly +relationship: RO:0002212 GO:0007416 ! negatively regulates synapse assembly +relationship: RO:0002212 GO:0099054 ! negatively regulates presynapse assembly created_by: bc creation_date: 2016-10-27T16:08:20Z @@ -136874,8 +136382,8 @@ synonym: "upregulation of presynaptic terminal assembly" EXACT [GOC:TermGenie] is_a: GO:0051130 ! positive regulation of cellular component organization is_a: GO:1905606 ! regulation of presynapse assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0099054 ! presynapse assembly -relationship: positively_regulates GO:0099054 ! presynapse assembly +intersection_of: RO:0002213 GO:0099054 ! positively regulates presynapse assembly +relationship: RO:0002213 GO:0099054 ! positively regulates presynapse assembly created_by: bc creation_date: 2016-10-27T16:08:28Z @@ -136890,8 +136398,8 @@ synonym: "regulation of serotonin formation" EXACT [GOC:TermGenie] synonym: "regulation of serotonin synthesis" EXACT [GOC:TermGenie] is_a: GO:0009889 ! regulation of biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042427 ! serotonin biosynthetic process -relationship: regulates GO:0042427 ! serotonin biosynthetic process +intersection_of: RO:0002211 GO:0042427 ! regulates (processual) serotonin biosynthetic process +relationship: RO:0002211 GO:0042427 ! regulates (processual) serotonin biosynthetic process created_by: pad creation_date: 2016-10-31T14:26:20Z @@ -136927,8 +136435,8 @@ synonym: "negative regulation of serotonin synthesis" EXACT [GOC:TermGenie] is_a: GO:0009890 ! negative regulation of biosynthetic process is_a: GO:1905627 ! regulation of serotonin biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042427 ! serotonin biosynthetic process -relationship: negatively_regulates GO:0042427 ! serotonin biosynthetic process +intersection_of: RO:0002212 GO:0042427 ! negatively regulates serotonin biosynthetic process +relationship: RO:0002212 GO:0042427 ! negatively regulates serotonin biosynthetic process created_by: pad creation_date: 2016-10-31T14:26:28Z @@ -136964,8 +136472,8 @@ synonym: "upregulation of serotonin synthesis" EXACT [GOC:TermGenie] is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:1905627 ! regulation of serotonin biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042427 ! serotonin biosynthetic process -relationship: positively_regulates GO:0042427 ! serotonin biosynthetic process +intersection_of: RO:0002213 GO:0042427 ! positively regulates serotonin biosynthetic process +relationship: RO:0002213 GO:0042427 ! positively regulates serotonin biosynthetic process created_by: pad creation_date: 2016-10-31T14:26:36Z @@ -136979,8 +136487,8 @@ synonym: "protein localisation to euchromatin" EXACT [GOC:TermGenie] synonym: "protein localization in euchromatin" EXACT [GOC:TermGenie] is_a: GO:0071168 ! protein localization to chromatin intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0000791 ! euchromatin -relationship: has_target_end_location GO:0000791 ! euchromatin +intersection_of: RO:0002339 GO:0000791 ! has target end location euchromatin +relationship: RO:0002339 GO:0000791 ! has target end location euchromatin created_by: pga creation_date: 2016-11-01T16:16:14Z @@ -136994,8 +136502,8 @@ synonym: "establishment of protein localisation to euchromatin" EXACT [GOC:TermG synonym: "establishment of protein localization in euchromatin" EXACT [GOC:TermGenie] is_a: GO:0071169 ! establishment of protein localization to chromatin intersection_of: GO:0045184 ! establishment of protein localization -intersection_of: has_target_end_location GO:0000791 ! euchromatin -relationship: has_target_end_location GO:0000791 ! euchromatin +intersection_of: RO:0002339 GO:0000791 ! has target end location euchromatin +relationship: RO:0002339 GO:0000791 ! has target end location euchromatin created_by: pga creation_date: 2016-11-01T16:16:22Z @@ -137007,29 +136515,11 @@ def: "Any process that modulates the frequency, rate or extent of protein locali synonym: "regulation of protein localisation to chromatin" EXACT [GOC:TermGenie] is_a: GO:0032880 ! regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0071168 ! protein localization to chromatin -relationship: regulates GO:0071168 ! protein localization to chromatin +intersection_of: RO:0002211 GO:0071168 ! regulates (processual) protein localization to chromatin +relationship: RO:0002211 GO:0071168 ! regulates (processual) protein localization to chromatin created_by: pga creation_date: 2016-11-01T16:33:52Z -[Term] -id: GO:1905636 -name: positive regulation of RNA polymerase II regulatory region sequence-specific DNA binding -namespace: biological_process -def: "Any process that activates or increases the frequency, rate or extent of RNA polymerase II regulatory region sequence-specific DNA binding." [GO_REF:0000059, GOC:bc, GOC:PARL, GOC:TermGenie, PMID:23675531] -subset: gocheck_do_not_annotate -synonym: "activation of RNA polymerase II regulatory region sequence-specific DNA binding" NARROW [GOC:TermGenie] -synonym: "up regulation of RNA polymerase II regulatory region sequence-specific DNA binding" EXACT [GOC:TermGenie] -synonym: "up-regulation of RNA polymerase II regulatory region sequence-specific DNA binding" EXACT [GOC:TermGenie] -synonym: "upregulation of RNA polymerase II regulatory region sequence-specific DNA binding" EXACT [GOC:TermGenie] -is_a: GO:1903025 ! regulation of RNA polymerase II regulatory region sequence-specific DNA binding -is_a: GO:2000679 ! positive regulation of transcription regulatory region DNA binding -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0000977 ! RNA polymerase II transcription regulatory region sequence-specific DNA binding -relationship: positively_regulates GO:0000977 ! RNA polymerase II transcription regulatory region sequence-specific DNA binding -created_by: bc -creation_date: 2016-11-03T12:03:07Z - [Term] id: GO:1905651 name: regulation of artery morphogenesis @@ -137039,8 +136529,8 @@ synonym: "regulation of arterial morphogenesis" EXACT [GOC:TermGenie] synonym: "regulation of arteriogenesis" EXACT [GOC:TermGenie] is_a: GO:0022603 ! regulation of anatomical structure morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048844 ! artery morphogenesis -relationship: regulates GO:0048844 ! artery morphogenesis +intersection_of: RO:0002211 GO:0048844 ! regulates (processual) artery morphogenesis +relationship: RO:0002211 GO:0048844 ! regulates (processual) artery morphogenesis created_by: rph creation_date: 2016-11-09T12:19:37Z @@ -137066,8 +136556,8 @@ synonym: "negative regulation of arteriogenesis" EXACT [GOC:TermGenie] is_a: GO:1905651 ! regulation of artery morphogenesis is_a: GO:2000181 ! negative regulation of blood vessel morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048844 ! artery morphogenesis -relationship: negatively_regulates GO:0048844 ! artery morphogenesis +intersection_of: RO:0002212 GO:0048844 ! negatively regulates artery morphogenesis +relationship: RO:0002212 GO:0048844 ! negatively regulates artery morphogenesis created_by: rph creation_date: 2016-11-09T12:19:53Z @@ -137093,8 +136583,8 @@ synonym: "upregulation of artery morphogenesis" EXACT [GOC:TermGenie] is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:1905651 ! regulation of artery morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048844 ! artery morphogenesis -relationship: positively_regulates GO:0048844 ! artery morphogenesis +intersection_of: RO:0002213 GO:0048844 ! positively regulates artery morphogenesis +relationship: RO:0002213 GO:0048844 ! positively regulates artery morphogenesis created_by: rph creation_date: 2016-11-09T12:20:01Z @@ -137107,8 +136597,8 @@ comment: An example of this is PPP3CA in human (Q08209) in 17640527 (inferred fr is_a: GO:0090279 ! regulation of calcium ion import is_a: GO:1903169 ! regulation of calcium ion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0098703 ! calcium ion import across plasma membrane -relationship: regulates GO:0098703 ! calcium ion import across plasma membrane +intersection_of: RO:0002211 GO:0098703 ! regulates (processual) calcium ion import across plasma membrane +relationship: RO:0002211 GO:0098703 ! regulates (processual) calcium ion import across plasma membrane created_by: bhm creation_date: 2016-11-11T09:26:06Z @@ -137126,8 +136616,8 @@ is_a: GO:0090280 ! positive regulation of calcium ion import is_a: GO:1904427 ! positive regulation of calcium ion transmembrane transport is_a: GO:1905664 ! regulation of calcium ion import across plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0098703 ! calcium ion import across plasma membrane -relationship: positively_regulates GO:0098703 ! calcium ion import across plasma membrane +intersection_of: RO:0002213 GO:0098703 ! positively regulates calcium ion import across plasma membrane +relationship: RO:0002213 GO:0098703 ! positively regulates calcium ion import across plasma membrane created_by: bhm creation_date: 2016-11-11T09:26:23Z @@ -137140,8 +136630,8 @@ synonym: "regulation of lysosome organisation" EXACT [GOC:TermGenie] synonym: "regulation of lysosome organization and biogenesis" RELATED [GOC:TermGenie] is_a: GO:0044088 ! regulation of vacuole organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007040 ! lysosome organization -relationship: regulates GO:0007040 ! lysosome organization +intersection_of: RO:0002211 GO:0007040 ! regulates (processual) lysosome organization +relationship: RO:0002211 GO:0007040 ! regulates (processual) lysosome organization created_by: sl creation_date: 2016-11-11T22:01:04Z @@ -137167,8 +136657,8 @@ synonym: "negative regulation of lysosome organization and biogenesis" RELATED [ is_a: GO:0010639 ! negative regulation of organelle organization is_a: GO:1905671 ! regulation of lysosome organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007040 ! lysosome organization -relationship: negatively_regulates GO:0007040 ! lysosome organization +intersection_of: RO:0002212 GO:0007040 ! negatively regulates lysosome organization +relationship: RO:0002212 GO:0007040 ! negatively regulates lysosome organization created_by: sl creation_date: 2016-11-11T22:01:12Z @@ -137194,8 +136684,8 @@ synonym: "upregulation of lysosome organization and biogenesis" RELATED [GOC:Ter is_a: GO:0044090 ! positive regulation of vacuole organization is_a: GO:1905671 ! regulation of lysosome organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007040 ! lysosome organization -relationship: positively_regulates GO:0007040 ! lysosome organization +intersection_of: RO:0002213 GO:0007040 ! positively regulates lysosome organization +relationship: RO:0002213 GO:0007040 ! positively regulates lysosome organization created_by: sl creation_date: 2016-11-11T22:01:20Z @@ -137208,8 +136698,8 @@ synonym: "cell nucleus disassembly" EXACT [GOC:TermGenie] is_a: GO:0006997 ! nucleus organization is_a: GO:1903008 ! organelle disassembly intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0005634 ! nucleus -relationship: results_in_disassembly_of GO:0005634 ! nucleus +intersection_of: RO:0002590 GO:0005634 ! results in disassembly of nucleus +relationship: RO:0002590 GO:0005634 ! results in disassembly of nucleus created_by: pr creation_date: 2016-11-14T13:38:57Z @@ -137225,8 +136715,8 @@ synonym: "lipid particle disassembly" EXACT [GOC:TermGenie] is_a: GO:0034389 ! lipid droplet organization is_a: GO:1903008 ! organelle disassembly intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0005811 ! lipid droplet -relationship: results_in_disassembly_of GO:0005811 ! lipid droplet +intersection_of: RO:0002590 GO:0005811 ! results in disassembly of lipid droplet +relationship: RO:0002590 GO:0005811 ! results in disassembly of lipid droplet created_by: pr creation_date: 2016-11-14T13:39:06Z @@ -137262,8 +136752,8 @@ is_a: GO:0046877 ! regulation of saliva secretion is_a: GO:0051048 ! negative regulation of secretion is_a: GO:0060457 ! negative regulation of digestive system process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0046541 ! saliva secretion -relationship: negatively_regulates GO:0046541 ! saliva secretion +intersection_of: RO:0002212 GO:0046541 ! negatively regulates saliva secretion +relationship: RO:0002212 GO:0046541 ! negatively regulates saliva secretion created_by: pga creation_date: 2016-12-09T10:24:00Z @@ -137275,8 +136765,8 @@ def: "The developmental process by which a hard palate is generated and organize synonym: "palatum durum morphogenesis" EXACT [GOC:TermGenie] is_a: GO:0009653 ! anatomical structure morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis -intersection_of: results_in_morphogenesis_of UBERON:0003216 ! hard palate -relationship: results_in_morphogenesis_of UBERON:0003216 ! hard palate +intersection_of: RO:0002298 UBERON:0003216 ! results in morphogenesis of hard palate +relationship: RO:0002298 UBERON:0003216 ! results in morphogenesis of hard palate created_by: pga creation_date: 2016-12-09T12:22:24Z @@ -137288,8 +136778,8 @@ def: "A process in which a protein is transported to, or maintained in, a locati synonym: "protein localisation to cytoplasmic microtubule" EXACT [GOC:TermGenie] is_a: GO:0035372 ! protein localization to microtubule intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005881 ! cytoplasmic microtubule -relationship: has_target_end_location GO:0005881 ! cytoplasmic microtubule +intersection_of: RO:0002339 GO:0005881 ! has target end location cytoplasmic microtubule +relationship: RO:0002339 GO:0005881 ! has target end location cytoplasmic microtubule created_by: mah creation_date: 2016-12-12T15:31:07Z @@ -137301,8 +136791,8 @@ def: "Any process that modulates the frequency, rate or extent of mesodermal cel synonym: "regulation of mesoderm cell differentiation" EXACT [GOC:TermGenie] is_a: GO:0045595 ! regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048333 ! mesodermal cell differentiation -relationship: regulates GO:0048333 ! mesodermal cell differentiation +intersection_of: RO:0002211 GO:0048333 ! regulates (processual) mesodermal cell differentiation +relationship: RO:0002211 GO:0048333 ! regulates (processual) mesodermal cell differentiation created_by: rph creation_date: 2016-12-21T12:44:13Z @@ -137323,8 +136813,8 @@ synonym: "negative regulation of mesoderm cell differentiation" EXACT [GOC:TermG is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:1905770 ! regulation of mesodermal cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048333 ! mesodermal cell differentiation -relationship: negatively_regulates GO:0048333 ! mesodermal cell differentiation +intersection_of: RO:0002212 GO:0048333 ! negatively regulates mesodermal cell differentiation +relationship: RO:0002212 GO:0048333 ! negatively regulates mesodermal cell differentiation created_by: rph creation_date: 2016-12-21T12:44:23Z @@ -137345,8 +136835,8 @@ synonym: "upregulation of mesodermal cell differentiation" EXACT [GOC:TermGenie] is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:1905770 ! regulation of mesodermal cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048333 ! mesodermal cell differentiation -relationship: positively_regulates GO:0048333 ! mesodermal cell differentiation +intersection_of: RO:0002213 GO:0048333 ! positively regulates mesodermal cell differentiation +relationship: RO:0002213 GO:0048333 ! positively regulates mesodermal cell differentiation created_by: rph creation_date: 2016-12-21T12:44:32Z @@ -137364,9 +136854,9 @@ synonym: "regulation of tactition, sensory detection of mechanical stimulus" EXA is_a: GO:0032101 ! regulation of response to external stimulus is_a: GO:0051931 ! regulation of sensory perception intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0050976 ! detection of mechanical stimulus involved in sensory perception of touch -relationship: regulates GO:0007600 ! sensory perception -relationship: regulates GO:0050976 ! detection of mechanical stimulus involved in sensory perception of touch +intersection_of: RO:0002211 GO:0050976 ! regulates (processual) detection of mechanical stimulus involved in sensory perception of touch +relationship: RO:0002211 GO:0007600 ! regulates (processual) sensory perception +relationship: RO:0002211 GO:0050976 ! regulates (processual) detection of mechanical stimulus involved in sensory perception of touch created_by: hbye creation_date: 2017-01-09T15:11:04Z @@ -137413,9 +136903,9 @@ is_a: GO:0031645 ! negative regulation of nervous system process is_a: GO:0032102 ! negative regulation of response to external stimulus is_a: GO:1905787 ! regulation of detection of mechanical stimulus involved in sensory perception of touch intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0050976 ! detection of mechanical stimulus involved in sensory perception of touch -relationship: negatively_regulates GO:0050877 ! nervous system process -relationship: negatively_regulates GO:0050976 ! detection of mechanical stimulus involved in sensory perception of touch +intersection_of: RO:0002212 GO:0050976 ! negatively regulates detection of mechanical stimulus involved in sensory perception of touch +relationship: RO:0002212 GO:0050877 ! negatively regulates nervous system process +relationship: RO:0002212 GO:0050976 ! negatively regulates detection of mechanical stimulus involved in sensory perception of touch created_by: hbye creation_date: 2017-01-09T15:11:14Z @@ -137462,9 +136952,9 @@ is_a: GO:0031646 ! positive regulation of nervous system process is_a: GO:0032103 ! positive regulation of response to external stimulus is_a: GO:1905787 ! regulation of detection of mechanical stimulus involved in sensory perception of touch intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0050976 ! detection of mechanical stimulus involved in sensory perception of touch -relationship: positively_regulates GO:0050877 ! nervous system process -relationship: positively_regulates GO:0050976 ! detection of mechanical stimulus involved in sensory perception of touch +intersection_of: RO:0002213 GO:0050976 ! positively regulates detection of mechanical stimulus involved in sensory perception of touch +relationship: RO:0002213 GO:0050877 ! positively regulates nervous system process +relationship: RO:0002213 GO:0050976 ! positively regulates detection of mechanical stimulus involved in sensory perception of touch created_by: hbye creation_date: 2017-01-09T15:11:23Z @@ -137479,8 +136969,8 @@ synonym: "synapse elimination" BROAD [] synonym: "synapse removal" BROAD [] is_a: GO:0098883 ! synapse pruning intersection_of: GO:0022411 ! cellular component disassembly -intersection_of: results_in_disassembly_of GO:0060076 ! excitatory synapse -relationship: results_in_disassembly_of GO:0060076 ! excitatory synapse +intersection_of: RO:0002590 GO:0060076 ! results in disassembly of excitatory synapse +relationship: RO:0002590 GO:0060076 ! results in disassembly of excitatory synapse created_by: tb creation_date: 2017-01-11T22:03:06Z @@ -137496,8 +136986,8 @@ synonym: "regulation of synapse elimination" EXACT [] synonym: "regulation of synapse removal" EXACT [] is_a: GO:0050807 ! regulation of synapse organization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0098883 ! synapse pruning -relationship: regulates GO:0098883 ! synapse pruning +intersection_of: RO:0002211 GO:0098883 ! regulates (processual) synapse pruning +relationship: RO:0002211 GO:0098883 ! regulates (processual) synapse pruning created_by: tb creation_date: 2017-01-11T22:03:15Z @@ -137517,8 +137007,8 @@ synonym: "regulation of synapse removal" BROAD [] is_a: GO:1905806 ! regulation of synapse pruning is_a: GO:1905809 ! negative regulation of synapse organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0098883 ! synapse pruning -relationship: negatively_regulates GO:0098883 ! synapse pruning +intersection_of: RO:0002212 GO:0098883 ! negatively regulates synapse pruning +relationship: RO:0002212 GO:0098883 ! negatively regulates synapse pruning created_by: tb creation_date: 2017-01-11T22:03:24Z @@ -137538,8 +137028,8 @@ synonym: "upregulation of synapse disassembly" EXACT [GOC:TermGenie] is_a: GO:0051130 ! positive regulation of cellular component organization is_a: GO:1905806 ! regulation of synapse pruning intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0098883 ! synapse pruning -relationship: positively_regulates GO:0098883 ! synapse pruning +intersection_of: RO:0002213 GO:0098883 ! positively regulates synapse pruning +relationship: RO:0002213 GO:0098883 ! positively regulates synapse pruning created_by: tb creation_date: 2017-01-11T22:03:33Z @@ -137575,8 +137065,8 @@ synonym: "negative regulation of synapse organization and biogenesis" RELATED [G is_a: GO:0050807 ! regulation of synapse organization is_a: GO:0051129 ! negative regulation of cellular component organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0050808 ! synapse organization -relationship: negatively_regulates GO:0050808 ! synapse organization +intersection_of: RO:0002212 GO:0050808 ! negatively regulates synapse organization +relationship: RO:0002212 GO:0050808 ! negatively regulates synapse organization created_by: tb creation_date: 2017-01-11T22:03:41Z @@ -137591,8 +137081,8 @@ synonym: "regulation of synapse elimination" BROAD [] synonym: "regulation of synapse removal" BROAD [] is_a: GO:1905806 ! regulation of synapse pruning intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1905805 ! excitatory synapse pruning -relationship: regulates GO:1905805 ! excitatory synapse pruning +intersection_of: RO:0002211 GO:1905805 ! regulates (processual) excitatory synapse pruning +relationship: RO:0002211 GO:1905805 ! regulates (processual) excitatory synapse pruning created_by: tb creation_date: 2017-01-12T02:38:27Z @@ -137612,8 +137102,8 @@ synonym: "regulation of synapse removal" BROAD [] is_a: GO:1905807 ! negative regulation of synapse pruning is_a: GO:1905810 ! regulation of excitatory synapse pruning intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1905805 ! excitatory synapse pruning -relationship: negatively_regulates GO:1905805 ! excitatory synapse pruning +intersection_of: RO:0002212 GO:1905805 ! negatively regulates excitatory synapse pruning +relationship: RO:0002212 GO:1905805 ! negatively regulates excitatory synapse pruning created_by: tb creation_date: 2017-01-12T02:38:36Z @@ -137639,8 +137129,8 @@ synonym: "upregulation of nuclear chromosome condensation" EXACT [GOC:TermGenie] is_a: GO:0060623 ! regulation of chromosome condensation is_a: GO:2001252 ! positive regulation of chromosome organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030261 ! chromosome condensation -relationship: positively_regulates GO:0030261 ! chromosome condensation +intersection_of: RO:0002213 GO:0030261 ! positively regulates chromosome condensation +relationship: RO:0002213 GO:0030261 ! positively regulates chromosome condensation created_by: bhm creation_date: 2017-01-13T14:13:44Z @@ -137656,9 +137146,9 @@ synonym: "inhibition of microtubule nucleation" NARROW [GOC:TermGenie] is_a: GO:0010968 ! regulation of microtubule nucleation is_a: GO:0031115 ! negative regulation of microtubule polymerization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007020 ! microtubule nucleation -relationship: negatively_regulates GO:0007020 ! microtubule nucleation -relationship: negatively_regulates GO:0046785 ! microtubule polymerization +intersection_of: RO:0002212 GO:0007020 ! negatively regulates microtubule nucleation +relationship: RO:0002212 GO:0007020 ! negatively regulates microtubule nucleation +relationship: RO:0002212 GO:0046785 ! negatively regulates microtubule polymerization created_by: hbye creation_date: 2017-01-17T12:00:56Z @@ -137670,8 +137160,8 @@ def: "The process whose specific outcome is the progression of an epididymis ove synonym: "epididymus development" EXACT [GOC:TermGenie] is_a: GO:0035295 ! tube development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0001301 ! epididymis -relationship: results_in_development_of UBERON:0001301 ! epididymis +intersection_of: RO:0002296 UBERON:0001301 ! results in development of epididymis +relationship: RO:0002296 UBERON:0001301 ! results in development of epididymis created_by: sl creation_date: 2017-01-27T00:00:33Z @@ -137685,8 +137175,8 @@ synonym: "regulation of protein localisation to cell leading edge" EXACT [GOC:Te synonym: "regulation of protein localization in cell leading edge" EXACT [GOC:TermGenie] is_a: GO:0032880 ! regulation of protein localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1902463 ! protein localization to cell leading edge -relationship: regulates GO:1902463 ! protein localization to cell leading edge +intersection_of: RO:0002211 GO:1902463 ! regulates (processual) protein localization to cell leading edge +relationship: RO:0002211 GO:1902463 ! regulates (processual) protein localization to cell leading edge created_by: sl creation_date: 2017-01-27T19:34:55Z @@ -137717,8 +137207,8 @@ synonym: "negative regulation of protein localization in cell leading edge" EXAC is_a: GO:1903828 ! negative regulation of protein localization is_a: GO:1905871 ! regulation of protein localization to cell leading edge intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1902463 ! protein localization to cell leading edge -relationship: negatively_regulates GO:1902463 ! protein localization to cell leading edge +intersection_of: RO:0002212 GO:1902463 ! negatively regulates protein localization to cell leading edge +relationship: RO:0002212 GO:1902463 ! negatively regulates protein localization to cell leading edge created_by: sl creation_date: 2017-01-27T19:35:04Z @@ -137749,8 +137239,8 @@ synonym: "upregulation of protein localization to cell leading edge" EXACT [GOC: is_a: GO:1903829 ! positive regulation of protein localization is_a: GO:1905871 ! regulation of protein localization to cell leading edge intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1902463 ! protein localization to cell leading edge -relationship: positively_regulates GO:1902463 ! protein localization to cell leading edge +intersection_of: RO:0002213 GO:1902463 ! positively regulates protein localization to cell leading edge +relationship: RO:0002213 GO:1902463 ! positively regulates protein localization to cell leading edge created_by: sl creation_date: 2017-01-27T19:35:13Z @@ -137764,9 +137254,9 @@ is_a: GO:0051239 ! regulation of multicellular organismal process is_a: GO:0060284 ! regulation of cell development is_a: GO:2000241 ! regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048477 ! oogenesis -relationship: regulates GO:0032501 ! multicellular organismal process -relationship: regulates GO:0048477 ! oogenesis +intersection_of: RO:0002211 GO:0048477 ! regulates (processual) oogenesis +relationship: RO:0002211 GO:0032501 ! regulates (processual) multicellular organismal process +relationship: RO:0002211 GO:0048477 ! regulates (processual) oogenesis created_by: hbye creation_date: 2017-01-31T09:31:05Z @@ -137789,9 +137279,9 @@ is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1905879 ! regulation of oogenesis is_a: GO:2000242 ! negative regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048477 ! oogenesis -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0048477 ! oogenesis +intersection_of: RO:0002212 GO:0048477 ! negatively regulates oogenesis +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0048477 ! negatively regulates oogenesis created_by: hbye creation_date: 2017-01-31T09:31:15Z @@ -137814,9 +137304,9 @@ is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1905879 ! regulation of oogenesis is_a: GO:2000243 ! positive regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048477 ! oogenesis -relationship: positively_regulates GO:0032501 ! multicellular organismal process -relationship: positively_regulates GO:0048477 ! oogenesis +intersection_of: RO:0002213 GO:0048477 ! positively regulates oogenesis +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process +relationship: RO:0002213 GO:0048477 ! positively regulates oogenesis created_by: hbye creation_date: 2017-01-31T09:31:23Z @@ -137827,8 +137317,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of smooth muscle tissue development." [GO_REF:0000058, GOC:bhm, GOC:TermGenie, PMID:14709716] is_a: GO:1901861 ! regulation of muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048745 ! smooth muscle tissue development -relationship: regulates GO:0048745 ! smooth muscle tissue development +intersection_of: RO:0002211 GO:0048745 ! regulates (processual) smooth muscle tissue development +relationship: RO:0002211 GO:0048745 ! regulates (processual) smooth muscle tissue development created_by: bhm creation_date: 2017-02-01T14:31:16Z @@ -137844,8 +137334,8 @@ synonym: "inhibition of smooth muscle tissue development" NARROW [GOC:TermGenie] is_a: GO:1901862 ! negative regulation of muscle tissue development is_a: GO:1905899 ! regulation of smooth muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048745 ! smooth muscle tissue development -relationship: negatively_regulates GO:0048745 ! smooth muscle tissue development +intersection_of: RO:0002212 GO:0048745 ! negatively regulates smooth muscle tissue development +relationship: RO:0002212 GO:0048745 ! negatively regulates smooth muscle tissue development created_by: bhm creation_date: 2017-02-01T14:31:24Z @@ -137861,8 +137351,8 @@ synonym: "upregulation of smooth muscle tissue development" EXACT [GOC:TermGenie is_a: GO:1901863 ! positive regulation of muscle tissue development is_a: GO:1905899 ! regulation of smooth muscle tissue development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048745 ! smooth muscle tissue development -relationship: positively_regulates GO:0048745 ! smooth muscle tissue development +intersection_of: RO:0002213 GO:0048745 ! positively regulates smooth muscle tissue development +relationship: RO:0002213 GO:0048745 ! positively regulates smooth muscle tissue development created_by: bhm creation_date: 2017-02-01T14:31:33Z @@ -137873,8 +137363,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of mesoderm formation." [GO_REF:0000058, GOC:BHF, GOC:BHF_miRNA, GOC:rph, GOC:TermGenie, PMID:23939491] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001707 ! mesoderm formation -relationship: regulates GO:0001707 ! mesoderm formation +intersection_of: RO:0002211 GO:0001707 ! regulates (processual) mesoderm formation +relationship: RO:0002211 GO:0001707 ! regulates (processual) mesoderm formation created_by: rph creation_date: 2017-02-03T12:28:20Z @@ -137890,9 +137380,9 @@ synonym: "inhibition of mesoderm formation" NARROW [GOC:TermGenie] is_a: GO:1905902 ! regulation of mesoderm formation is_a: GO:2000381 ! negative regulation of mesoderm development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001707 ! mesoderm formation -relationship: negatively_regulates GO:0001707 ! mesoderm formation -relationship: negatively_regulates GO:0007498 ! mesoderm development +intersection_of: RO:0002212 GO:0001707 ! negatively regulates mesoderm formation +relationship: RO:0002212 GO:0001707 ! negatively regulates mesoderm formation +relationship: RO:0002212 GO:0007498 ! negatively regulates mesoderm development created_by: rph creation_date: 2017-02-03T12:28:29Z @@ -137908,9 +137398,9 @@ synonym: "upregulation of mesoderm formation" EXACT [GOC:TermGenie] is_a: GO:1905902 ! regulation of mesoderm formation is_a: GO:2000382 ! positive regulation of mesoderm development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001707 ! mesoderm formation -relationship: positively_regulates GO:0001707 ! mesoderm formation -relationship: positively_regulates GO:0007498 ! mesoderm development +intersection_of: RO:0002213 GO:0001707 ! positively regulates mesoderm formation +relationship: RO:0002213 GO:0001707 ! positively regulates mesoderm formation +relationship: RO:0002213 GO:0007498 ! positively regulates mesoderm development created_by: rph creation_date: 2017-02-03T12:28:38Z @@ -137923,8 +137413,8 @@ synonym: "regulation of calcium ion efflux from cell" EXACT [GOC:TermGenie] synonym: "regulation of calcium ion export from cell" EXACT [] is_a: GO:1903169 ! regulation of calcium ion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:1990034 ! calcium ion export across plasma membrane -relationship: regulates GO:1990034 ! calcium ion export across plasma membrane +intersection_of: RO:0002211 GO:1990034 ! regulates (processual) calcium ion export across plasma membrane +relationship: RO:0002211 GO:1990034 ! regulates (processual) calcium ion export across plasma membrane created_by: rph creation_date: 2017-02-07T13:20:39Z @@ -137946,8 +137436,8 @@ synonym: "negative regulation of calcium ion export from cell" EXACT [] is_a: GO:1903170 ! negative regulation of calcium ion transmembrane transport is_a: GO:1905912 ! regulation of calcium ion export across plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1990034 ! calcium ion export across plasma membrane -relationship: negatively_regulates GO:1990034 ! calcium ion export across plasma membrane +intersection_of: RO:0002212 GO:1990034 ! negatively regulates calcium ion export across plasma membrane +relationship: RO:0002212 GO:1990034 ! negatively regulates calcium ion export across plasma membrane created_by: rph creation_date: 2017-02-07T13:20:48Z @@ -137969,8 +137459,8 @@ synonym: "upregulation of calcium ion export from cell" EXACT [GOC:TermGenie] is_a: GO:1904427 ! positive regulation of calcium ion transmembrane transport is_a: GO:1905912 ! regulation of calcium ion export across plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:1990034 ! calcium ion export across plasma membrane -relationship: positively_regulates GO:1990034 ! calcium ion export across plasma membrane +intersection_of: RO:0002213 GO:1990034 ! positively regulates calcium ion export across plasma membrane +relationship: RO:0002213 GO:1990034 ! positively regulates calcium ion export across plasma membrane created_by: rph creation_date: 2017-02-07T13:20:56Z @@ -137986,8 +137476,8 @@ synonym: "regulation of acetylcholine synthesis" EXACT [GOC:TermGenie] is_a: GO:0009889 ! regulation of biosynthetic process is_a: GO:0060408 ! regulation of acetylcholine metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008292 ! acetylcholine biosynthetic process -relationship: regulates GO:0008292 ! acetylcholine biosynthetic process +intersection_of: RO:0002211 GO:0008292 ! regulates (processual) acetylcholine biosynthetic process +relationship: RO:0002211 GO:0008292 ! regulates (processual) acetylcholine biosynthetic process created_by: bc creation_date: 2017-02-08T13:08:30Z @@ -138024,8 +137514,8 @@ is_a: GO:0009890 ! negative regulation of biosynthetic process is_a: GO:0060410 ! negative regulation of acetylcholine metabolic process is_a: GO:1905921 ! regulation of acetylcholine biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008292 ! acetylcholine biosynthetic process -relationship: negatively_regulates GO:0008292 ! acetylcholine biosynthetic process +intersection_of: RO:0002212 GO:0008292 ! negatively regulates acetylcholine biosynthetic process +relationship: RO:0002212 GO:0008292 ! negatively regulates acetylcholine biosynthetic process created_by: bc creation_date: 2017-02-08T13:08:39Z @@ -138062,8 +137552,8 @@ is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:0060409 ! positive regulation of acetylcholine metabolic process is_a: GO:1905921 ! regulation of acetylcholine biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008292 ! acetylcholine biosynthetic process -relationship: positively_regulates GO:0008292 ! acetylcholine biosynthetic process +intersection_of: RO:0002213 GO:0008292 ! positively regulates acetylcholine biosynthetic process +relationship: RO:0002213 GO:0008292 ! positively regulates acetylcholine biosynthetic process created_by: bc creation_date: 2017-02-08T13:08:48Z @@ -138075,9 +137565,9 @@ def: "Any process that modulates the frequency, rate or extent of germ cell prol is_a: GO:0042127 ! regulation of cell population proliferation is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0036093 ! germ cell proliferation -relationship: regulates GO:0032501 ! multicellular organismal process -relationship: regulates GO:0036093 ! germ cell proliferation +intersection_of: RO:0002211 GO:0036093 ! regulates (processual) germ cell proliferation +relationship: RO:0002211 GO:0032501 ! regulates (processual) multicellular organismal process +relationship: RO:0002211 GO:0036093 ! regulates (processual) germ cell proliferation created_by: hbye creation_date: 2017-02-09T14:51:31Z @@ -138094,9 +137584,9 @@ is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1905936 ! regulation of germ cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0036093 ! germ cell proliferation -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0036093 ! germ cell proliferation +intersection_of: RO:0002212 GO:0036093 ! negatively regulates germ cell proliferation +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0036093 ! negatively regulates germ cell proliferation created_by: hbye creation_date: 2017-02-09T14:51:41Z @@ -138113,9 +137603,9 @@ is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1905936 ! regulation of germ cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0036093 ! germ cell proliferation -relationship: positively_regulates GO:0032501 ! multicellular organismal process -relationship: positively_regulates GO:0036093 ! germ cell proliferation +intersection_of: RO:0002213 GO:0036093 ! positively regulates germ cell proliferation +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process +relationship: RO:0002213 GO:0036093 ! positively regulates germ cell proliferation created_by: hbye creation_date: 2017-02-09T14:51:51Z @@ -138128,8 +137618,8 @@ synonym: "regulation of gonadogenesis" EXACT [GOC:TermGenie] is_a: GO:0050793 ! regulation of developmental process is_a: GO:2000241 ! regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008406 ! gonad development -relationship: regulates GO:0008406 ! gonad development +intersection_of: RO:0002211 GO:0008406 ! regulates (processual) gonad development +relationship: RO:0002211 GO:0008406 ! regulates (processual) gonad development created_by: hbye creation_date: 2017-02-09T17:01:50Z @@ -138152,9 +137642,9 @@ is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1905939 ! regulation of gonad development is_a: GO:2000242 ! negative regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008406 ! gonad development -relationship: negatively_regulates GO:0008406 ! gonad development -relationship: negatively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002212 GO:0008406 ! negatively regulates gonad development +relationship: RO:0002212 GO:0008406 ! negatively regulates gonad development +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process created_by: hbye creation_date: 2017-02-09T17:01:59Z @@ -138177,9 +137667,9 @@ is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1905939 ! regulation of gonad development is_a: GO:2000243 ! positive regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008406 ! gonad development -relationship: positively_regulates GO:0008406 ! gonad development -relationship: positively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002213 GO:0008406 ! positively regulates gonad development +relationship: RO:0002213 GO:0008406 ! positively regulates gonad development +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process created_by: hbye creation_date: 2017-02-09T17:02:08Z @@ -138191,8 +137681,8 @@ def: "Any process that modulates the frequency, rate or extent of response to ca synonym: "regulation of response to Ca2+ ion" EXACT [GOC:TermGenie] is_a: GO:0048583 ! regulation of response to stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051592 ! response to calcium ion -relationship: regulates GO:0051592 ! response to calcium ion +intersection_of: RO:0002211 GO:0051592 ! regulates (processual) response to calcium ion +relationship: RO:0002211 GO:0051592 ! regulates (processual) response to calcium ion created_by: bc creation_date: 2017-02-13T10:56:34Z @@ -138213,8 +137703,8 @@ synonym: "negative regulation of response to Ca2+ ion" EXACT [GOC:TermGenie] is_a: GO:0048585 ! negative regulation of response to stimulus is_a: GO:1905945 ! regulation of response to calcium ion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051592 ! response to calcium ion -relationship: negatively_regulates GO:0051592 ! response to calcium ion +intersection_of: RO:0002212 GO:0051592 ! negatively regulates response to calcium ion +relationship: RO:0002212 GO:0051592 ! negatively regulates response to calcium ion created_by: bc creation_date: 2017-02-13T10:56:41Z @@ -138235,8 +137725,8 @@ synonym: "upregulation of response to calcium ion" EXACT [GOC:TermGenie] is_a: GO:0048584 ! positive regulation of response to stimulus is_a: GO:1905945 ! regulation of response to calcium ion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051592 ! response to calcium ion -relationship: positively_regulates GO:0051592 ! response to calcium ion +intersection_of: RO:0002213 GO:0051592 ! positively regulates response to calcium ion +relationship: RO:0002213 GO:0051592 ! positively regulates response to calcium ion created_by: bc creation_date: 2017-02-13T10:56:49Z @@ -138254,8 +137744,8 @@ is_a: GO:0090281 ! negative regulation of calcium ion import is_a: GO:1903170 ! negative regulation of calcium ion transmembrane transport is_a: GO:1905664 ! regulation of calcium ion import across plasma membrane intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0098703 ! calcium ion import across plasma membrane -relationship: negatively_regulates GO:0098703 ! calcium ion import across plasma membrane +intersection_of: RO:0002212 GO:0098703 ! negatively regulates calcium ion import across plasma membrane +relationship: RO:0002212 GO:0098703 ! negatively regulates calcium ion import across plasma membrane created_by: bhm creation_date: 2017-02-17T09:42:30Z @@ -138267,8 +137757,8 @@ def: "Any process that modulates the frequency, rate or extent of lipid localiza synonym: "regulation of lipid localisation" EXACT [GOC:TermGenie] is_a: GO:0032879 ! regulation of localization intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0010876 ! lipid localization -relationship: regulates GO:0010876 ! lipid localization +intersection_of: RO:0002211 GO:0010876 ! regulates (processual) lipid localization +relationship: RO:0002211 GO:0010876 ! regulates (processual) lipid localization created_by: rz creation_date: 2017-02-21T12:12:22Z @@ -138289,8 +137779,8 @@ synonym: "negative regulation of lipid localisation" EXACT [GOC:TermGenie] is_a: GO:0048519 ! negative regulation of biological process is_a: GO:1905952 ! regulation of lipid localization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0010876 ! lipid localization -relationship: negatively_regulates GO:0010876 ! lipid localization +intersection_of: RO:0002212 GO:0010876 ! negatively regulates lipid localization +relationship: RO:0002212 GO:0010876 ! negatively regulates lipid localization created_by: rz creation_date: 2017-02-21T12:12:41Z @@ -138311,8 +137801,8 @@ synonym: "upregulation of lipid localization" EXACT [GOC:TermGenie] is_a: GO:0048518 ! positive regulation of biological process is_a: GO:1905952 ! regulation of lipid localization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0010876 ! lipid localization -relationship: positively_regulates GO:0010876 ! lipid localization +intersection_of: RO:0002213 GO:0010876 ! positively regulates lipid localization +relationship: RO:0002213 GO:0010876 ! positively regulates lipid localization created_by: rz creation_date: 2017-02-21T12:12:49Z @@ -138329,9 +137819,9 @@ is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:1901509 ! regulation of endothelial tube morphogenesis is_a: GO:1905331 ! negative regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0061154 ! endothelial tube morphogenesis -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0061154 ! endothelial tube morphogenesis +intersection_of: RO:0002212 GO:0061154 ! negatively regulates endothelial tube morphogenesis +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0061154 ! negatively regulates endothelial tube morphogenesis created_by: rph creation_date: 2017-02-21T15:17:31Z @@ -138348,9 +137838,9 @@ is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:1901509 ! regulation of endothelial tube morphogenesis is_a: GO:1905332 ! positive regulation of morphogenesis of an epithelium intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061154 ! endothelial tube morphogenesis -relationship: positively_regulates GO:0032501 ! multicellular organismal process -relationship: positively_regulates GO:0061154 ! endothelial tube morphogenesis +intersection_of: RO:0002213 GO:0061154 ! positively regulates endothelial tube morphogenesis +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process +relationship: RO:0002213 GO:0061154 ! positively regulates endothelial tube morphogenesis created_by: rph creation_date: 2017-02-21T15:17:39Z @@ -138362,8 +137852,8 @@ def: "Any process that modulates the frequency, rate or extent of cellular respo is_a: GO:0050794 ! regulation of cellular process is_a: GO:1901419 ! regulation of response to alcohol intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0097306 ! cellular response to alcohol -relationship: regulates GO:0097306 ! cellular response to alcohol +intersection_of: RO:0002211 GO:0097306 ! regulates (processual) cellular response to alcohol +relationship: RO:0002211 GO:0097306 ! regulates (processual) cellular response to alcohol created_by: hbye creation_date: 2017-02-22T12:03:00Z @@ -138380,8 +137870,8 @@ is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:1901420 ! negative regulation of response to alcohol is_a: GO:1905957 ! regulation of cellular response to alcohol intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0097306 ! cellular response to alcohol -relationship: negatively_regulates GO:0097306 ! cellular response to alcohol +intersection_of: RO:0002212 GO:0097306 ! negatively regulates cellular response to alcohol +relationship: RO:0002212 GO:0097306 ! negatively regulates cellular response to alcohol created_by: hbye creation_date: 2017-02-22T12:03:08Z @@ -138398,8 +137888,8 @@ is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:1901421 ! positive regulation of response to alcohol is_a: GO:1905957 ! regulation of cellular response to alcohol intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0097306 ! cellular response to alcohol -relationship: positively_regulates GO:0097306 ! cellular response to alcohol +intersection_of: RO:0002213 GO:0097306 ! positively regulates cellular response to alcohol +relationship: RO:0002213 GO:0097306 ! positively regulates cellular response to alcohol created_by: hbye creation_date: 2017-02-22T12:03:16Z @@ -138410,8 +137900,8 @@ namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized features of a glutamatergic neuron." [GO_REF:0000086, GOC:TermGenie, PMID:24030726] is_a: GO:0030182 ! neuron differentiation intersection_of: GO:0030154 ! cell differentiation -intersection_of: results_in_acquisition_of_features_of CL:0000679 ! glutamatergic neuron -relationship: results_in_acquisition_of_features_of CL:0000679 ! glutamatergic neuron +intersection_of: RO:0002315 CL:0000679 ! results in acquisition of features of glutamatergic neuron +relationship: RO:0002315 CL:0000679 ! results in acquisition of features of glutamatergic neuron created_by: sl creation_date: 2017-02-23T17:40:43Z @@ -138424,8 +137914,8 @@ def: "Any apoptotic process in a retinal cell." [GOC:mtg_apoptosis, PMID:1555848 synonym: "induction of retinal programmed cell death" RELATED [] is_a: GO:0006915 ! apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0009004 ! retinal cell -relationship: occurs_in CL:0009004 ! retinal cell +intersection_of: BFO:0000066 CL:0009004 ! occurs in retinal cell +relationship: BFO:0000066 CL:0009004 ! occurs in retinal cell created_by: pr creation_date: 2012-12-12T10:15:08Z @@ -138436,8 +137926,8 @@ namespace: biological_process def: "Any apoptotic process in a compound eye retinal cell." [GOC:mtg_apoptosis, PMID:12021768] is_a: GO:1990009 ! retinal cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0009001 ! compound eye retinal cell -relationship: occurs_in CL:0009001 ! compound eye retinal cell +intersection_of: BFO:0000066 CL:0009001 ! occurs in compound eye retinal cell +relationship: BFO:0000066 CL:0009001 ! occurs in compound eye retinal cell created_by: pr creation_date: 2012-12-12T10:21:07Z @@ -138451,14 +137941,14 @@ synonym: "calcium ion export from cell" EXACT [] is_a: GO:0070588 ! calcium ion transmembrane transport is_a: GO:0140115 ! export across plasma membrane intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:29108 ! calcium(2+) -intersection_of: has_target_end_location GO:0005576 ! extracellular region -intersection_of: has_target_start_location GO:0005829 ! cytosol -intersection_of: results_in_transport_across GO:0005886 ! plasma membrane -relationship: has_primary_input CHEBI:29108 ! calcium(2+) -relationship: has_target_end_location GO:0005576 ! extracellular region -relationship: has_target_start_location GO:0005829 ! cytosol -relationship: results_in_transport_across GO:0005886 ! plasma membrane +intersection_of: RO:0002338 GO:0005829 ! has target start location cytosol +intersection_of: RO:0002339 GO:0005576 ! has target end location extracellular region +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) +relationship: RO:0002338 GO:0005829 ! has target start location cytosol +relationship: RO:0002339 GO:0005576 ! has target end location extracellular region +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:29108 ! has primary input calcium(2+) created_by: mah creation_date: 2013-02-07T13:01:29Z @@ -138476,8 +137966,8 @@ synonym: "protein localization to lipid body" EXACT [] synonym: "protein localization to lipid particle" EXACT [] is_a: GO:0033365 ! protein localization to organelle intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0005811 ! lipid droplet -relationship: has_target_end_location GO:0005811 ! lipid droplet +intersection_of: RO:0002339 GO:0005811 ! has target end location lipid droplet +relationship: RO:0002339 GO:0005811 ! has target end location lipid droplet created_by: sart creation_date: 2013-02-15T12:40:57Z @@ -138493,14 +137983,14 @@ is_a: GO:0008089 ! anterograde axonal transport is_a: GO:0047496 ! vesicle transport along microtubule is_a: GO:0099519 ! dense core granule cytoskeletal transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input GO:0098992 ! neuronal dense core vesicle -intersection_of: has_target_end_location GO:0098793 ! presynapse -intersection_of: occurs_in GO:1904115 ! axon cytoplasm -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: has_primary_input GO:0098992 ! neuronal dense core vesicle -relationship: has_target_end_location GO:0098793 ! presynapse -relationship: occurs_in GO:1904115 ! axon cytoplasm -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: BFO:0000066 GO:1904115 ! occurs in axon cytoplasm +intersection_of: RO:0002339 GO:0098793 ! has target end location presynapse +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +intersection_of: RO:0004009 GO:0098992 ! has primary input neuronal dense core vesicle +relationship: BFO:0000066 GO:1904115 ! occurs in axon cytoplasm +relationship: RO:0002339 GO:0098793 ! has target end location presynapse +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: RO:0004009 GO:0098992 ! has primary input neuronal dense core vesicle [Term] id: GO:1990049 @@ -138514,14 +138004,14 @@ is_a: GO:0008090 ! retrograde axonal transport is_a: GO:0047496 ! vesicle transport along microtubule is_a: GO:0099519 ! dense core granule cytoskeletal transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input GO:0098992 ! neuronal dense core vesicle -intersection_of: has_target_start_location GO:0098793 ! presynapse -intersection_of: occurs_in GO:1904115 ! axon cytoplasm -intersection_of: results_in_transport_along GO:0005874 ! microtubule -relationship: has_primary_input GO:0098992 ! neuronal dense core vesicle -relationship: has_target_start_location GO:0098793 ! presynapse -relationship: occurs_in GO:1904115 ! axon cytoplasm -relationship: results_in_transport_along GO:0005874 ! microtubule +intersection_of: BFO:0000066 GO:1904115 ! occurs in axon cytoplasm +intersection_of: RO:0002338 GO:0098793 ! has target start location presynapse +intersection_of: RO:0002341 GO:0005874 ! results in transport along microtubule +intersection_of: RO:0004009 GO:0098992 ! has primary input neuronal dense core vesicle +relationship: BFO:0000066 GO:1904115 ! occurs in axon cytoplasm +relationship: RO:0002338 GO:0098793 ! has target start location presynapse +relationship: RO:0002341 GO:0005874 ! results in transport along microtubule +relationship: RO:0004009 GO:0098992 ! has primary input neuronal dense core vesicle created_by: pr creation_date: 2013-02-19T13:31:44Z @@ -138532,8 +138022,8 @@ namespace: biological_process def: "Any apoptotic process in a lens fiber cell. Lens fiber cells are elongated, tightly packed cells that make up the bulk of the mature lens in a camera-type eye." [CL:0011004, GOC:hjd, PMID:11095619] is_a: GO:1904019 ! epithelial cell apoptotic process intersection_of: GO:0006915 ! apoptotic process -intersection_of: occurs_in CL:0011004 ! lens fiber cell -relationship: occurs_in CL:0011004 ! lens fiber cell +intersection_of: BFO:0000066 CL:0011004 ! occurs in lens fiber cell +relationship: BFO:0000066 CL:0011004 ! occurs in lens fiber cell created_by: hjd creation_date: 2013-05-01T19:09:28Z @@ -138550,10 +138040,10 @@ synonym: "secretion of exosome" EXACT [PMID:18617898] is_a: GO:0006887 ! exocytosis is_a: GO:0051650 ! establishment of vesicle localization intersection_of: GO:0006887 ! exocytosis -intersection_of: has_primary_input GO:0070062 ! extracellular exosome -relationship: has_primary_input GO:0070062 ! extracellular exosome +intersection_of: RO:0004009 GO:0070062 ! has primary input extracellular exosome relationship: never_in_taxon NCBITaxon:4890 ! Ascomycota relationship: part_of GO:0097734 ! extracellular exosome biogenesis +relationship: RO:0004009 GO:0070062 ! has primary input extracellular exosome created_by: hjd creation_date: 2013-09-04T21:08:14Z @@ -138564,8 +138054,8 @@ namespace: molecular_function def: "Binding to euchromatin, a dispersed and relatively uncompacted form of chromatin." [GOC:vw, PMID:22431512] is_a: GO:0003682 ! chromatin binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input GO:0000791 ! euchromatin -relationship: has_primary_input GO:0000791 ! euchromatin +intersection_of: RO:0004009 GO:0000791 ! has primary input euchromatin +relationship: RO:0004009 GO:0000791 ! has primary input euchromatin created_by: tb creation_date: 2013-09-11T19:18:38Z @@ -138589,8 +138079,8 @@ def: "Binding to a steroid hormone." [GOC:ln] is_a: GO:0005496 ! steroid binding is_a: GO:0042562 ! hormone binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:26764 ! steroid hormone -relationship: has_primary_input CHEBI:26764 ! steroid hormone +intersection_of: RO:0004009 CHEBI:26764 ! has primary input steroid hormone +relationship: RO:0004009 CHEBI:26764 ! has primary input steroid hormone created_by: pr creation_date: 2013-11-15T09:26:18Z @@ -138601,8 +138091,8 @@ namespace: molecular_function def: "Binding to a keratin filament, an intermediate filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells." [GOC:krc, PMID:6170061] is_a: GO:0019215 ! intermediate filament binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input GO:0045095 ! keratin filament -relationship: has_primary_input GO:0045095 ! keratin filament +intersection_of: RO:0004009 GO:0045095 ! has primary input keratin filament +relationship: RO:0004009 GO:0045095 ! has primary input keratin filament created_by: tb creation_date: 2013-12-13T22:05:25Z @@ -138613,8 +138103,8 @@ namespace: biological_process def: "The movement of a neutrophil within or between different tissues and organs of the body." [PMID:1826836] is_a: GO:0097530 ! granulocyte migration intersection_of: GO:0016477 ! cell migration -intersection_of: results_in_movement_of CL:0000775 ! neutrophil -relationship: results_in_movement_of CL:0000775 ! neutrophil +intersection_of: RO:0002565 CL:0000775 ! results in movement of neutrophil +relationship: RO:0002565 CL:0000775 ! results in movement of neutrophil created_by: sl creation_date: 2014-01-10T00:17:47Z @@ -138626,8 +138116,8 @@ def: "A process in which RNA is transported to and maintained in a part of a chr synonym: "RNA localisation to chromatin" EXACT [] is_a: GO:0006403 ! RNA localization intersection_of: GO:0006403 ! RNA localization -intersection_of: has_target_end_location GO:0000785 ! chromatin -relationship: has_target_end_location GO:0000785 ! chromatin +intersection_of: RO:0002339 GO:0000785 ! has target end location chromatin +relationship: RO:0002339 GO:0000785 ! has target end location chromatin created_by: mah creation_date: 2014-01-30T15:55:34Z @@ -138654,8 +138144,8 @@ synonym: "penile bone development" EXACT [GOC:sl] synonym: "penis bone development" EXACT [GOC:sl] is_a: GO:0048608 ! reproductive structure development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0006435 ! os penis -relationship: results_in_development_of UBERON:0006435 ! os penis +intersection_of: RO:0002296 UBERON:0006435 ! results in development of os penis +relationship: RO:0002296 UBERON:0006435 ! results in development of os penis created_by: sl creation_date: 2014-05-01T23:59:13Z @@ -138668,12 +138158,12 @@ synonym: "lipid transport across blood brain barrier" EXACT [] is_a: GO:0006869 ! lipid transport is_a: GO:0150104 ! transport across blood-brain barrier intersection_of: GO:0150104 ! transport across blood-brain barrier -intersection_of: has_primary_input CHEBI:18059 ! lipid -intersection_of: results_in_transport_across UBERON:0000120 ! blood brain barrier -relationship: has_primary_input CHEBI:18059 ! lipid +intersection_of: RO:0002342 UBERON:0000120 ! results in transport across blood brain barrier +intersection_of: RO:0004009 CHEBI:18059 ! has primary input lipid relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa -relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa -relationship: results_in_transport_across UBERON:0000120 ! blood brain barrier +relationship: RO:0002160 NCBITaxon:6072 ! only in taxon Eumetazoa +relationship: RO:0002342 UBERON:0000120 ! results in transport across blood brain barrier +relationship: RO:0004009 CHEBI:18059 ! has primary input lipid created_by: sjp creation_date: 2014-05-08T09:52:28Z @@ -138684,9 +138174,9 @@ namespace: biological_process def: "Any process that reduces or removes the toxicity of iron ion. These include transport of iron away from sensitive areas and to compartments or complexes whose purpose is sequestration of iron ion." [GOC:sart, PMID:23064556] is_a: GO:0061687 ! detoxification of inorganic compound intersection_of: GO:0098754 ! detoxification -intersection_of: has_primary_input CHEBI:24875 ! iron cation -relationship: has_primary_input CHEBI:24875 ! iron cation +intersection_of: RO:0004009 CHEBI:24875 ! has primary input iron cation relationship: part_of GO:0010039 ! response to iron ion +relationship: RO:0004009 CHEBI:24875 ! has primary input iron cation created_by: sart creation_date: 2014-08-19T10:12:46Z @@ -138698,11 +138188,34 @@ def: "Steps required to transform a dense core granule generated at the trans-Go synonym: "dense core vesicle maturation" EXACT [] is_a: GO:0061792 ! secretory granule maturation intersection_of: GO:0021700 ! developmental maturation -intersection_of: results_in_maturation_of GO:0031045 ! dense core granule -relationship: results_in_maturation_of GO:0031045 ! dense core granule +intersection_of: RO:0002299 GO:0031045 ! results in maturation of dense core granule +relationship: RO:0002299 GO:0031045 ! results in maturation of dense core granule created_by: kmv creation_date: 2014-09-30T20:35:11Z +[Term] +id: GO:1990573 +name: potassium ion import across plasma membrane +namespace: biological_process +alt_id: GO:0010107 +def: "The directed movement of potassium ions from outside of a cell, across the plasma membrane and into the cytosol." [PMID:9139127] +synonym: "potassium import" BROAD [] +synonym: "potassium ion import" BROAD [] +synonym: "potassium ion uptake" BROAD [GOC:dph, GOC:tb] +is_a: GO:0071805 ! potassium ion transmembrane transport +is_a: GO:0098659 ! inorganic cation import across plasma membrane +intersection_of: GO:0006810 ! transport +intersection_of: RO:0002338 GO:0005576 ! has target start location extracellular region +intersection_of: RO:0002339 GO:0005829 ! has target end location cytosol +intersection_of: RO:0002342 GO:0005886 ! results in transport across plasma membrane +intersection_of: RO:0004009 CHEBI:29103 ! has primary input potassium(1+) +relationship: RO:0002338 GO:0005576 ! has target start location extracellular region +relationship: RO:0002339 GO:0005829 ! has target end location cytosol +relationship: RO:0002342 GO:0005886 ! results in transport across plasma membrane +relationship: RO:0004009 CHEBI:29103 ! has primary input potassium(1+) +created_by: vw +creation_date: 2014-12-04T09:48:12Z + [Term] id: GO:1990580 name: regulation of cytoplasmic translational termination @@ -138711,9 +138224,9 @@ def: "Any process that modulates the frequency, rate or extent of cytoplasmic tr is_a: GO:0006449 ! regulation of translational termination is_a: GO:2000765 ! regulation of cytoplasmic translation intersection_of: GO:0050789 ! regulation of biological process -intersection_of: regulates GO:0002184 ! cytoplasmic translational termination -relationship: regulates GO:0002181 ! cytoplasmic translation -relationship: regulates GO:0002184 ! cytoplasmic translational termination +intersection_of: RO:0002211 GO:0002184 ! regulates (processual) cytoplasmic translational termination +relationship: RO:0002211 GO:0002181 ! regulates (processual) cytoplasmic translation +relationship: RO:0002211 GO:0002184 ! regulates (processual) cytoplasmic translational termination created_by: vw creation_date: 2014-12-10T15:48:55Z @@ -138725,8 +138238,8 @@ def: "The multiplication or reproduction of sebocytes by cell division, resultin synonym: "sebocyte proliferation" RELATED [GOC:dph] is_a: GO:0008283 ! cell population proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000317 ! sebum secreting cell -relationship: acts_on_population_of CL:0000317 ! sebum secreting cell +intersection_of: RO:0012003 CL:0000317 ! acts on population of sebum secreting cell +relationship: RO:0012003 CL:0000317 ! acts on population of sebum secreting cell created_by: hjd creation_date: 2015-02-23T19:43:49Z @@ -138738,8 +138251,8 @@ def: "The multiplication or reproduction of cholangiocytes, resulting in the exp synonym: "hepatoblast proliferation" EXACT [] is_a: GO:0050673 ! epithelial cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:1000488 ! cholangiocyte -relationship: acts_on_population_of CL:1000488 ! cholangiocyte +intersection_of: RO:0012003 CL:1000488 ! acts on population of cholangiocyte +relationship: RO:0012003 CL:1000488 ! acts on population of cholangiocyte creation_date: 2015-03-16T23:23:50Z [Term] @@ -138750,9 +138263,9 @@ def: "A process that results in the assembly, arrangement of constituent parts, synonym: "presynaptic active zone organisation" EXACT [] is_a: GO:0016043 ! cellular component organization intersection_of: GO:0009987 ! cellular process -intersection_of: results_in_organization_of GO:0048786 ! presynaptic active zone +intersection_of: RO:0002592 GO:0048786 ! results in organization of presynaptic active zone relationship: part_of GO:0050808 ! synapse organization -relationship: results_in_organization_of GO:0048786 ! presynaptic active zone +relationship: RO:0002592 GO:0048786 ! results in organization of presynaptic active zone created_by: pr creation_date: 2015-03-20T10:16:24Z @@ -138763,8 +138276,8 @@ namespace: biological_process def: "The multiplication or reproduction of granulosa cells, resulting in the expansion of the granulosa cells population. A granulosa cell is a supporting cell for the developing female gamete in the ovary of mammals. They develop from the coelomic epithelial cells of the gonadal ridge." [PMID:22383759] is_a: GO:0050673 ! epithelial cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000501 ! granulosa cell -relationship: acts_on_population_of CL:0000501 ! granulosa cell +intersection_of: RO:0012003 CL:0000501 ! acts on population of granulosa cell +relationship: RO:0012003 CL:0000501 ! acts on population of granulosa cell created_by: sl creation_date: 2015-05-06T18:56:04Z @@ -138776,8 +138289,8 @@ def: "Any process carried out at the cellular level that reduces or removes the is_a: GO:0009987 ! cellular process is_a: GO:0098754 ! detoxification intersection_of: GO:0098754 ! detoxification -intersection_of: occurs_in CL:0000000 ! cell -relationship: occurs_in CL:0000000 ! cell +intersection_of: BFO:0000066 CL:0000000 ! occurs in cell +relationship: BFO:0000066 CL:0000000 ! occurs in cell relationship: part_of GO:0097237 ! cellular response to toxic substance created_by: vw creation_date: 2015-05-18T16:17:46Z @@ -138790,8 +138303,8 @@ def: "The directed movement of a Schwann cell guided by a specific chemical conc is_a: GO:0036135 ! Schwann cell migration is_a: GO:0060326 ! cell chemotaxis intersection_of: GO:0006935 ! chemotaxis -intersection_of: results_in_movement_of CL:0002573 ! Schwann cell -relationship: results_in_movement_of CL:0002573 ! Schwann cell +intersection_of: RO:0002565 CL:0002573 ! results in movement of Schwann cell +relationship: RO:0002565 CL:0002573 ! results in movement of Schwann cell created_by: sl creation_date: 2015-05-21T19:19:09Z @@ -138802,11 +138315,11 @@ namespace: biological_process def: "A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry of the large intestine, exclusive of the rectum. The colon is that part of the large intestine that connects the small intestine to the rectum." [PMID:24170253] is_a: GO:0006939 ! smooth muscle contraction intersection_of: GO:0006939 ! smooth muscle contraction -intersection_of: occurs_in UBERON:0001155 ! colon +intersection_of: BFO:0000066 UBERON:0001155 ! occurs in colon +relationship: BFO:0000066 UBERON:0001155 ! occurs in colon relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: occurs_in UBERON:0001155 ! colon -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of GO:0014827 ! intestine smooth muscle contraction +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata created_by: sl creation_date: 2015-06-10T18:29:21Z @@ -138818,8 +138331,8 @@ def: "The flow of blood through the gastric mucosa of an animal, enabling the tr synonym: "stomach mucosal blood circulation" EXACT [] is_a: GO:0008015 ! blood circulation intersection_of: GO:0008015 ! blood circulation -intersection_of: occurs_in UBERON:0004786 ! gastrointestinal system mucosa -relationship: occurs_in UBERON:0004786 ! gastrointestinal system mucosa +intersection_of: BFO:0000066 UBERON:0004786 ! occurs in gastrointestinal system mucosa +relationship: BFO:0000066 UBERON:0004786 ! occurs in gastrointestinal system mucosa created_by: sl creation_date: 2015-06-10T20:11:09Z @@ -138830,11 +138343,11 @@ namespace: biological_process def: "A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry in the intestine between the stomach and the large intestine." [PMID:11991626] is_a: GO:0006939 ! smooth muscle contraction intersection_of: GO:0006939 ! smooth muscle contraction -intersection_of: occurs_in UBERON:0002108 ! small intestine +intersection_of: BFO:0000066 UBERON:0002108 ! occurs in small intestine +relationship: BFO:0000066 UBERON:0002108 ! occurs in small intestine relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata -relationship: occurs_in UBERON:0002108 ! small intestine -relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of GO:0014827 ! intestine smooth muscle contraction +relationship: RO:0002160 NCBITaxon:7742 ! only in taxon Vertebrata created_by: sl creation_date: 2015-06-11T18:02:33Z @@ -138845,38 +138358,10 @@ namespace: biological_process def: "A process in which a protein is transported to, or maintained in, the cell periphery." [PMID:18216290] is_a: GO:0008104 ! protein localization intersection_of: GO:0008104 ! protein localization -intersection_of: has_target_end_location GO:0071944 ! cell periphery -relationship: has_target_end_location GO:0071944 ! cell periphery +intersection_of: RO:0002339 GO:0071944 ! has target end location cell periphery +relationship: RO:0002339 GO:0071944 ! has target end location cell periphery creation_date: 2015-06-18T22:37:39Z -[Term] -id: GO:1990784 -name: response to dsDNA -namespace: biological_process -def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded DNA stimulus." [PMID:10051633] -synonym: "response to double-stranded DNA" EXACT [] -is_a: GO:0014070 ! response to organic cyclic compound -is_a: GO:1901698 ! response to nitrogen compound -intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:4705 ! double-stranded DNA -relationship: has_primary_input CHEBI:4705 ! double-stranded DNA -created_by: sl -creation_date: 2015-06-24T17:54:13Z - -[Term] -id: GO:1990786 -name: cellular response to dsDNA -namespace: biological_process -def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded DNA stimulus." [PMID:10051633] -is_a: GO:0071407 ! cellular response to organic cyclic compound -is_a: GO:1901699 ! cellular response to nitrogen compound -is_a: GO:1990784 ! response to dsDNA -intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:4705 ! double-stranded DNA -relationship: has_primary_input CHEBI:4705 ! double-stranded DNA -created_by: sl -creation_date: 2015-06-24T22:48:25Z - [Term] id: GO:1990791 name: dorsal root ganglion development @@ -138885,22 +138370,11 @@ def: "The process whose specific outcome is the progression of a dorsal root gan synonym: "DRG development" EXACT [] is_a: GO:0061548 ! ganglion development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0000044 ! dorsal root ganglion -relationship: results_in_development_of UBERON:0000044 ! dorsal root ganglion +intersection_of: RO:0002296 UBERON:0000044 ! results in development of dorsal root ganglion +relationship: RO:0002296 UBERON:0000044 ! results in development of dorsal root ganglion created_by: sl creation_date: 2015-07-02T22:09:54Z -[Term] -id: GO:1990837 -name: sequence-specific double-stranded DNA binding -namespace: molecular_function -def: "Binding to double-stranded DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA, e.g. promotor binding or rDNA binding." [GOC:dos, GOC:sl] -synonym: "sequence-specific dsDNA binding" EXACT [] -is_a: GO:0003690 ! double-stranded DNA binding -is_a: GO:0043565 ! sequence-specific DNA binding -created_by: sl -creation_date: 2015-08-25T17:30:06Z - [Term] id: GO:1990845 name: adaptive thermogenesis @@ -138921,8 +138395,8 @@ synonym: "maintenance of vacuole localization" EXACT [] synonym: "maintenance of vacuole location" EXACT [] is_a: GO:0051640 ! organelle localization intersection_of: GO:0051179 ! localization -intersection_of: has_primary_input GO:0005773 ! vacuole -relationship: has_primary_input GO:0005773 ! vacuole +intersection_of: RO:0004009 GO:0005773 ! has primary input vacuole +relationship: RO:0004009 GO:0005773 ! has primary input vacuole property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22182" xsd:anyURI created_by: mcc creation_date: 2015-09-10T08:16:02Z @@ -138936,8 +138410,8 @@ synonym: "acinic cell proliferation" EXACT [] synonym: "acinous cell proliferation" EXACT [] is_a: GO:0050673 ! epithelial cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000622 ! acinar cell -relationship: acts_on_population_of CL:0000622 ! acinar cell +intersection_of: RO:0012003 CL:0000622 ! acts on population of acinar cell +relationship: RO:0012003 CL:0000622 ! acts on population of acinar cell created_by: sl creation_date: 2015-09-25T14:26:09Z @@ -138950,8 +138424,8 @@ synonym: "vascular smooth muscle cell proliferation" EXACT [] synonym: "VSMC proliferation" EXACT [] is_a: GO:0048659 ! smooth muscle cell proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000359 ! vascular associated smooth muscle cell -relationship: acts_on_population_of CL:0000359 ! vascular associated smooth muscle cell +intersection_of: RO:0012003 CL:0000359 ! acts on population of vascular associated smooth muscle cell +relationship: RO:0012003 CL:0000359 ! acts on population of vascular associated smooth muscle cell created_by: sl creation_date: 2015-09-29T16:34:59Z @@ -138998,8 +138472,8 @@ synonym: "Ito cell proliferation" EXACT [] synonym: "perisinusoidal cell proliferation" EXACT [] is_a: GO:0048144 ! fibroblast proliferation intersection_of: GO:0008283 ! cell population proliferation -intersection_of: acts_on_population_of CL:0000632 ! hepatic stellate cell -relationship: acts_on_population_of CL:0000632 ! hepatic stellate cell +intersection_of: RO:0012003 CL:0000632 ! acts on population of hepatic stellate cell +relationship: RO:0012003 CL:0000632 ! acts on population of hepatic stellate cell created_by: sl creation_date: 2016-01-13T23:12:57Z @@ -139010,9 +138484,9 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of metanephric S-shaped body morphogenesis." [GOC:mtg_kidney_jan10, GOC:obol, GOC:yaf] is_a: GO:2000027 ! regulation of animal organ morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072284 ! metanephric S-shaped body morphogenesis -relationship: regulates GO:0009887 ! animal organ morphogenesis -relationship: regulates GO:0072284 ! metanephric S-shaped body morphogenesis +intersection_of: RO:0002211 GO:0072284 ! regulates (processual) metanephric S-shaped body morphogenesis +relationship: RO:0002211 GO:0009887 ! regulates (processual) animal organ morphogenesis +relationship: RO:0002211 GO:0072284 ! regulates (processual) metanephric S-shaped body morphogenesis created_by: jl creation_date: 2010-07-30T02:14:33Z @@ -139024,8 +138498,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:2000004 ! regulation of metanephric S-shaped body morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0072284 ! metanephric S-shaped body morphogenesis -relationship: negatively_regulates GO:0072284 ! metanephric S-shaped body morphogenesis +intersection_of: RO:0002212 GO:0072284 ! negatively regulates metanephric S-shaped body morphogenesis +relationship: RO:0002212 GO:0072284 ! negatively regulates metanephric S-shaped body morphogenesis created_by: jl creation_date: 2010-07-30T02:14:37Z @@ -139036,9 +138510,9 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of metanephric comma-shaped body morphogenesis." [GOC:mtg_kidney_jan10, GOC:obol, GOC:yaf] is_a: GO:2000027 ! regulation of animal organ morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072278 ! metanephric comma-shaped body morphogenesis -relationship: regulates GO:0009887 ! animal organ morphogenesis -relationship: regulates GO:0072278 ! metanephric comma-shaped body morphogenesis +intersection_of: RO:0002211 GO:0072278 ! regulates (processual) metanephric comma-shaped body morphogenesis +relationship: RO:0002211 GO:0009887 ! regulates (processual) animal organ morphogenesis +relationship: RO:0002211 GO:0072278 ! regulates (processual) metanephric comma-shaped body morphogenesis created_by: jl creation_date: 2010-07-30T02:17:12Z @@ -139050,8 +138524,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:2000006 ! regulation of metanephric comma-shaped body morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0072278 ! metanephric comma-shaped body morphogenesis -relationship: negatively_regulates GO:0072278 ! metanephric comma-shaped body morphogenesis +intersection_of: RO:0002212 GO:0072278 ! negatively regulates metanephric comma-shaped body morphogenesis +relationship: RO:0002212 GO:0072278 ! negatively regulates metanephric comma-shaped body morphogenesis created_by: jl creation_date: 2010-07-30T02:17:17Z @@ -139064,8 +138538,8 @@ synonym: "regulation of testicular development" EXACT [GOC:obol] synonym: "regulation of testis development" EXACT [GOC:obol] is_a: GO:1905939 ! regulation of gonad development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008584 ! male gonad development -relationship: regulates GO:0008584 ! male gonad development +intersection_of: RO:0002211 GO:0008584 ! regulates (processual) male gonad development +relationship: RO:0002211 GO:0008584 ! regulates (processual) male gonad development created_by: jl creation_date: 2010-07-15T03:29:05Z @@ -139079,8 +138553,8 @@ synonym: "negative regulation of testis development" EXACT [GOC:obol] is_a: GO:1905940 ! negative regulation of gonad development is_a: GO:2000018 ! regulation of male gonad development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008584 ! male gonad development -relationship: negatively_regulates GO:0008584 ! male gonad development +intersection_of: RO:0002212 GO:0008584 ! negatively regulates male gonad development +relationship: RO:0002212 GO:0008584 ! negatively regulates male gonad development created_by: jl creation_date: 2010-07-15T03:29:10Z @@ -139094,8 +138568,8 @@ synonym: "positive regulation of testis development" EXACT [GOC:obol] is_a: GO:1905941 ! positive regulation of gonad development is_a: GO:2000018 ! regulation of male gonad development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008584 ! male gonad development -relationship: positively_regulates GO:0008584 ! male gonad development +intersection_of: RO:0002213 GO:0008584 ! positively regulates male gonad development +relationship: RO:0002213 GO:0008584 ! positively regulates male gonad development created_by: jl creation_date: 2010-07-15T03:29:13Z @@ -139107,8 +138581,8 @@ def: "Any process that modulates the frequency, rate or extent of multicellular is_a: GO:0050793 ! regulation of developmental process is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007275 ! multicellular organism development -relationship: regulates GO:0007275 ! multicellular organism development +intersection_of: RO:0002211 GO:0007275 ! regulates (processual) multicellular organism development +relationship: RO:0002211 GO:0007275 ! regulates (processual) multicellular organism development created_by: tb creation_date: 2010-08-05T11:25:59Z @@ -139120,8 +138594,8 @@ def: "Any process that modulates the frequency, rate or extent of animal organ m synonym: "regulation of histogenesis and organogenesis" RELATED [GOC:obol] is_a: GO:0022603 ! regulation of anatomical structure morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009887 ! animal organ morphogenesis -relationship: regulates GO:0009887 ! animal organ morphogenesis +intersection_of: RO:0002211 GO:0009887 ! regulates (processual) animal organ morphogenesis +relationship: RO:0002211 GO:0009887 ! regulates (processual) animal organ morphogenesis created_by: tb creation_date: 2010-08-05T11:26:27Z @@ -139133,8 +138607,8 @@ def: "Any process that modulates the frequency, rate or extent of stem cell divi synonym: "regulation of stem cell renewal" EXACT [GOC:obol] is_a: GO:0051302 ! regulation of cell division intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0017145 ! stem cell division -relationship: regulates GO:0017145 ! stem cell division +intersection_of: RO:0002211 GO:0017145 ! regulates (processual) stem cell division +relationship: RO:0002211 GO:0017145 ! regulates (processual) stem cell division created_by: tb creation_date: 2010-08-05T11:34:53Z @@ -139147,9 +138621,9 @@ synonym: "regulation of maintenance of pluripotency" RELATED [GOC:obol] is_a: GO:0050793 ! regulation of developmental process is_a: GO:0051239 ! regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0019827 ! stem cell population maintenance +intersection_of: RO:0002211 GO:0019827 ! regulates (processual) stem cell population maintenance relationship: never_in_taxon NCBITaxon:4751 ! Fungi -relationship: regulates GO:0019827 ! stem cell population maintenance +relationship: RO:0002211 GO:0019827 ! regulates (processual) stem cell population maintenance created_by: tb creation_date: 2010-08-05T11:35:25Z @@ -139161,8 +138635,8 @@ def: "Any process that modulates the frequency, rate or extent of ureter smooth is_a: GO:0048634 ! regulation of muscle organ development is_a: GO:0051150 ! regulation of smooth muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072193 ! ureter smooth muscle cell differentiation -relationship: regulates GO:0072193 ! ureter smooth muscle cell differentiation +intersection_of: RO:0002211 GO:0072193 ! regulates (processual) ureter smooth muscle cell differentiation +relationship: RO:0002211 GO:0072193 ! regulates (processual) ureter smooth muscle cell differentiation created_by: jl creation_date: 2010-08-20T01:44:16Z @@ -139175,9 +138649,9 @@ is_a: GO:0051151 ! negative regulation of smooth muscle cell differentiation is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:2000061 ! regulation of ureter smooth muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0072193 ! ureter smooth muscle cell differentiation -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0072193 ! ureter smooth muscle cell differentiation +intersection_of: RO:0002212 GO:0072193 ! negatively regulates ureter smooth muscle cell differentiation +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0072193 ! negatively regulates ureter smooth muscle cell differentiation created_by: jl creation_date: 2010-08-20T01:44:23Z @@ -139190,9 +138664,9 @@ is_a: GO:0051152 ! positive regulation of smooth muscle cell differentiation is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:2000061 ! regulation of ureter smooth muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0072193 ! ureter smooth muscle cell differentiation -relationship: positively_regulates GO:0032501 ! multicellular organismal process -relationship: positively_regulates GO:0072193 ! ureter smooth muscle cell differentiation +intersection_of: RO:0002213 GO:0072193 ! positively regulates ureter smooth muscle cell differentiation +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process +relationship: RO:0002213 GO:0072193 ! positively regulates ureter smooth muscle cell differentiation created_by: jl creation_date: 2010-08-20T01:44:28Z @@ -139204,8 +138678,8 @@ def: "Any process that modulates the frequency, rate or extent of defense respon synonym: "regulation of physiological defense response to insect" EXACT [GOC:obol] is_a: GO:0031347 ! regulation of defense response intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002213 ! defense response to insect -relationship: regulates GO:0002213 ! defense response to insect +intersection_of: RO:0002211 GO:0002213 ! regulates (processual) defense response to insect +relationship: RO:0002211 GO:0002213 ! regulates (processual) defense response to insect created_by: tb creation_date: 2010-08-23T09:30:00Z @@ -139220,8 +138694,8 @@ synonym: "regulation of response to drought" EXACT [GOC:obol] synonym: "regulation of response to thirst" EXACT [GOC:obol] is_a: GO:0080134 ! regulation of response to stress intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0009414 ! response to water deprivation -relationship: regulates GO:0009414 ! response to water deprivation +intersection_of: RO:0002211 GO:0009414 ! regulates (processual) response to water deprivation +relationship: RO:0002211 GO:0009414 ! regulates (processual) response to water deprivation created_by: tb creation_date: 2010-08-23T11:32:32Z @@ -139234,8 +138708,8 @@ synonym: "regulation of pancreatic B cell development" EXACT [GOC:mah] synonym: "regulation of pancreatic beta cell development" EXACT [GOC:obol] is_a: GO:0060284 ! regulation of cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003323 ! type B pancreatic cell development -relationship: regulates GO:0003323 ! type B pancreatic cell development +intersection_of: RO:0002211 GO:0003323 ! regulates (processual) type B pancreatic cell development +relationship: RO:0002211 GO:0003323 ! regulates (processual) type B pancreatic cell development created_by: tb creation_date: 2010-08-27T11:19:37Z @@ -139250,9 +138724,9 @@ is_a: GO:0010721 ! negative regulation of cell development is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:2000074 ! regulation of type B pancreatic cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003323 ! type B pancreatic cell development -relationship: negatively_regulates GO:0003323 ! type B pancreatic cell development -relationship: negatively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002212 GO:0003323 ! negatively regulates type B pancreatic cell development +relationship: RO:0002212 GO:0003323 ! negatively regulates type B pancreatic cell development +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process created_by: tb creation_date: 2010-08-27T11:21:17Z @@ -139268,10 +138742,10 @@ is_a: GO:0030858 ! positive regulation of epithelial cell differentiation is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:2000074 ! regulation of type B pancreatic cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003323 ! type B pancreatic cell development -relationship: positively_regulates GO:0003323 ! type B pancreatic cell development -relationship: positively_regulates GO:0030855 ! epithelial cell differentiation -relationship: positively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002213 GO:0003323 ! positively regulates type B pancreatic cell development +relationship: RO:0002213 GO:0003323 ! positively regulates type B pancreatic cell development +relationship: RO:0002213 GO:0030855 ! positively regulates epithelial cell differentiation +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process created_by: tb creation_date: 2010-08-27T11:21:19Z @@ -139283,8 +138757,8 @@ def: "Any process that modulates the frequency, rate or extent of mesenchymal to synonym: "regulation of mesonephric mesenchyme to epithelial transition" RELATED [GOC:obol] is_a: GO:2000696 ! regulation of epithelial cell differentiation involved in kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061261 ! mesenchymal to epithelial transition involved in mesonephros morphogenesis -relationship: regulates GO:0061261 ! mesenchymal to epithelial transition involved in mesonephros morphogenesis +intersection_of: RO:0002211 GO:0061261 ! regulates (processual) mesenchymal to epithelial transition involved in mesonephros morphogenesis +relationship: RO:0002211 GO:0061261 ! regulates (processual) mesenchymal to epithelial transition involved in mesonephros morphogenesis created_by: dph creation_date: 2010-09-03T06:06:41Z @@ -139297,8 +138771,8 @@ synonym: "negative regulation of mesonephric mesenchyme to epithelial transition is_a: GO:2000084 ! regulation of mesenchymal to epithelial transition involved in mesonephros morphogenesis is_a: GO:2000697 ! negative regulation of epithelial cell differentiation involved in kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0061261 ! mesenchymal to epithelial transition involved in mesonephros morphogenesis -relationship: negatively_regulates GO:0061261 ! mesenchymal to epithelial transition involved in mesonephros morphogenesis +intersection_of: RO:0002212 GO:0061261 ! negatively regulates mesenchymal to epithelial transition involved in mesonephros morphogenesis +relationship: RO:0002212 GO:0061261 ! negatively regulates mesenchymal to epithelial transition involved in mesonephros morphogenesis created_by: dph creation_date: 2010-09-03T06:08:21Z @@ -139311,8 +138785,8 @@ synonym: "positive regulation of mesonephric mesenchyme to epithelial transition is_a: GO:2000084 ! regulation of mesenchymal to epithelial transition involved in mesonephros morphogenesis is_a: GO:2000698 ! positive regulation of epithelial cell differentiation involved in kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061261 ! mesenchymal to epithelial transition involved in mesonephros morphogenesis -relationship: positively_regulates GO:0061261 ! mesenchymal to epithelial transition involved in mesonephros morphogenesis +intersection_of: RO:0002213 GO:0061261 ! positively regulates mesenchymal to epithelial transition involved in mesonephros morphogenesis +relationship: RO:0002213 GO:0061261 ! positively regulates mesenchymal to epithelial transition involved in mesonephros morphogenesis created_by: dph creation_date: 2010-09-03T06:08:24Z @@ -139324,9 +138798,9 @@ def: "Any process that modulates the frequency, rate or extent of mesonephric gl is_a: GO:0061217 ! regulation of mesonephros development is_a: GO:0090192 ! regulation of glomerulus development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061224 ! mesonephric glomerulus development -relationship: regulates GO:0001823 ! mesonephros development -relationship: regulates GO:0061224 ! mesonephric glomerulus development +intersection_of: RO:0002211 GO:0061224 ! regulates (processual) mesonephric glomerulus development +relationship: RO:0002211 GO:0001823 ! regulates (processual) mesonephros development +relationship: RO:0002211 GO:0061224 ! regulates (processual) mesonephric glomerulus development created_by: dph creation_date: 2010-09-03T06:09:19Z @@ -139338,8 +138812,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0090194 ! negative regulation of glomerulus development is_a: GO:2000087 ! regulation of mesonephric glomerulus development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0061224 ! mesonephric glomerulus development -relationship: negatively_regulates GO:0061224 ! mesonephric glomerulus development +intersection_of: RO:0002212 GO:0061224 ! negatively regulates mesonephric glomerulus development +relationship: RO:0002212 GO:0061224 ! negatively regulates mesonephric glomerulus development created_by: dph creation_date: 2010-09-03T06:09:22Z @@ -139351,8 +138825,8 @@ def: "Any process that activates or increases the frequency, rate or extent of m is_a: GO:0090193 ! positive regulation of glomerulus development is_a: GO:2000087 ! regulation of mesonephric glomerulus development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061224 ! mesonephric glomerulus development -relationship: positively_regulates GO:0061224 ! mesonephric glomerulus development +intersection_of: RO:0002213 GO:0061224 ! positively regulates mesonephric glomerulus development +relationship: RO:0002213 GO:0061224 ! positively regulates mesonephric glomerulus development created_by: dph creation_date: 2010-09-03T06:09:24Z @@ -139363,8 +138837,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of mesonephric nephron tubule epithelial cell differentiation." [GOC:mtg_kidney_jan10] is_a: GO:0072182 ! regulation of nephron tubule epithelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061265 ! mesonephric nephron tubule epithelial cell differentiation -relationship: regulates GO:0061265 ! mesonephric nephron tubule epithelial cell differentiation +intersection_of: RO:0002211 GO:0061265 ! regulates (processual) mesonephric nephron tubule epithelial cell differentiation +relationship: RO:0002211 GO:0061265 ! regulates (processual) mesonephric nephron tubule epithelial cell differentiation created_by: dph creation_date: 2010-09-03T06:12:25Z @@ -139376,8 +138850,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0072183 ! negative regulation of nephron tubule epithelial cell differentiation is_a: GO:2000093 ! regulation of mesonephric nephron tubule epithelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0061265 ! mesonephric nephron tubule epithelial cell differentiation -relationship: negatively_regulates GO:0061265 ! mesonephric nephron tubule epithelial cell differentiation +intersection_of: RO:0002212 GO:0061265 ! negatively regulates mesonephric nephron tubule epithelial cell differentiation +relationship: RO:0002212 GO:0061265 ! negatively regulates mesonephric nephron tubule epithelial cell differentiation created_by: dph creation_date: 2010-09-03T06:12:28Z @@ -139389,8 +138863,8 @@ def: "Any process that modulates the frequency, rate or extent of leukocyte apop synonym: "regulation of leukocyte apoptosis" NARROW [] is_a: GO:0042981 ! regulation of apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0071887 ! leukocyte apoptotic process -relationship: regulates GO:0071887 ! leukocyte apoptotic process +intersection_of: RO:0002211 GO:0071887 ! regulates (processual) leukocyte apoptotic process +relationship: RO:0002211 GO:0071887 ! regulates (processual) leukocyte apoptotic process created_by: mah creation_date: 2010-09-15T01:42:05Z @@ -139403,8 +138877,8 @@ synonym: "negative regulation of leukocyte apoptosis" NARROW [] is_a: GO:0043066 ! negative regulation of apoptotic process is_a: GO:2000106 ! regulation of leukocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0071887 ! leukocyte apoptotic process -relationship: negatively_regulates GO:0071887 ! leukocyte apoptotic process +intersection_of: RO:0002212 GO:0071887 ! negatively regulates leukocyte apoptotic process +relationship: RO:0002212 GO:0071887 ! negatively regulates leukocyte apoptotic process created_by: mah creation_date: 2010-09-15T01:42:09Z @@ -139417,8 +138891,8 @@ synonym: "positive regulation of leukocyte apoptosis" NARROW [] is_a: GO:0043065 ! positive regulation of apoptotic process is_a: GO:2000106 ! regulation of leukocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0071887 ! leukocyte apoptotic process -relationship: positively_regulates GO:0071887 ! leukocyte apoptotic process +intersection_of: RO:0002213 GO:0071887 ! positively regulates leukocyte apoptotic process +relationship: RO:0002213 GO:0071887 ! positively regulates leukocyte apoptotic process created_by: mah creation_date: 2010-09-15T01:42:12Z @@ -139433,8 +138907,8 @@ synonym: "regulation of macrophage apoptosis" NARROW [] is_a: GO:0033032 ! regulation of myeloid cell apoptotic process is_a: GO:2000106 ! regulation of leukocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0071888 ! macrophage apoptotic process -relationship: regulates GO:0071888 ! macrophage apoptotic process +intersection_of: RO:0002211 GO:0071888 ! regulates (processual) macrophage apoptotic process +relationship: RO:0002211 GO:0071888 ! regulates (processual) macrophage apoptotic process created_by: mah creation_date: 2010-09-15T01:44:15Z @@ -139450,8 +138924,8 @@ is_a: GO:0033033 ! negative regulation of myeloid cell apoptotic process is_a: GO:2000107 ! negative regulation of leukocyte apoptotic process is_a: GO:2000109 ! regulation of macrophage apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0071888 ! macrophage apoptotic process -relationship: negatively_regulates GO:0071888 ! macrophage apoptotic process +intersection_of: RO:0002212 GO:0071888 ! negatively regulates macrophage apoptotic process +relationship: RO:0002212 GO:0071888 ! negatively regulates macrophage apoptotic process created_by: mah creation_date: 2010-09-15T01:44:18Z @@ -139467,8 +138941,8 @@ is_a: GO:0033034 ! positive regulation of myeloid cell apoptotic process is_a: GO:2000108 ! positive regulation of leukocyte apoptotic process is_a: GO:2000109 ! regulation of macrophage apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0071888 ! macrophage apoptotic process -relationship: positively_regulates GO:0071888 ! macrophage apoptotic process +intersection_of: RO:0002213 GO:0071888 ! positively regulates macrophage apoptotic process +relationship: RO:0002213 GO:0071888 ! positively regulates macrophage apoptotic process created_by: mah creation_date: 2010-09-15T01:44:21Z @@ -139481,8 +138955,8 @@ synonym: "regulation of bud site selection/establishment of cell polarity" RELAT synonym: "regulation of cell polarization" EXACT [GOC:obol] is_a: GO:0032878 ! regulation of establishment or maintenance of cell polarity intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030010 ! establishment of cell polarity -relationship: regulates GO:0030010 ! establishment of cell polarity +intersection_of: RO:0002211 GO:0030010 ! regulates (processual) establishment of cell polarity +relationship: RO:0002211 GO:0030010 ! regulates (processual) establishment of cell polarity created_by: dph creation_date: 2010-09-16T01:22:36Z @@ -139493,8 +138967,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cell proliferation involved in heart morphogenesis." [GOC:dph] is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061323 ! cell proliferation involved in heart morphogenesis -relationship: regulates GO:0061323 ! cell proliferation involved in heart morphogenesis +intersection_of: RO:0002211 GO:0061323 ! regulates (processual) cell proliferation involved in heart morphogenesis +relationship: RO:0002211 GO:0061323 ! regulates (processual) cell proliferation involved in heart morphogenesis created_by: dph creation_date: 2010-09-29T12:43:53Z @@ -139506,8 +138980,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:2000136 ! regulation of cell proliferation involved in heart morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0061323 ! cell proliferation involved in heart morphogenesis -relationship: negatively_regulates GO:0061323 ! cell proliferation involved in heart morphogenesis +intersection_of: RO:0002212 GO:0061323 ! negatively regulates cell proliferation involved in heart morphogenesis +relationship: RO:0002212 GO:0061323 ! negatively regulates cell proliferation involved in heart morphogenesis created_by: dph creation_date: 2010-09-29T12:43:55Z @@ -139519,8 +138993,8 @@ def: "Any process that activates or increases the frequency, rate or extent of c is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:2000136 ! regulation of cell proliferation involved in heart morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061323 ! cell proliferation involved in heart morphogenesis -relationship: positively_regulates GO:0061323 ! cell proliferation involved in heart morphogenesis +intersection_of: RO:0002213 GO:0061323 ! positively regulates cell proliferation involved in heart morphogenesis +relationship: RO:0002213 GO:0061323 ! positively regulates cell proliferation involved in heart morphogenesis created_by: dph creation_date: 2010-09-29T12:43:57Z @@ -139535,8 +139009,8 @@ synonym: "regulation of movement of a cell" EXACT [GOC:obol] is_a: GO:0040012 ! regulation of locomotion is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048870 ! cell motility -relationship: regulates GO:0048870 ! cell motility +intersection_of: RO:0002211 GO:0048870 ! regulates (processual) cell motility +relationship: RO:0002211 GO:0048870 ! regulates (processual) cell motility created_by: mah creation_date: 2010-10-01T09:41:21Z @@ -139552,8 +139026,8 @@ is_a: GO:0040013 ! negative regulation of locomotion is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:2000145 ! regulation of cell motility intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048870 ! cell motility -relationship: negatively_regulates GO:0048870 ! cell motility +intersection_of: RO:0002212 GO:0048870 ! negatively regulates cell motility +relationship: RO:0002212 GO:0048870 ! negatively regulates cell motility created_by: mah creation_date: 2010-10-01T09:41:26Z @@ -139569,8 +139043,8 @@ is_a: GO:0040017 ! positive regulation of locomotion is_a: GO:0048522 ! positive regulation of cellular process is_a: GO:2000145 ! regulation of cell motility intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048870 ! cell motility -relationship: positively_regulates GO:0048870 ! cell motility +intersection_of: RO:0002213 GO:0048870 ! positively regulates cell motility +relationship: RO:0002213 GO:0048870 ! positively regulates cell motility created_by: mah creation_date: 2010-10-01T09:41:30Z @@ -139583,8 +139057,8 @@ synonym: "positive regulation of ciliary cell motility" RELATED [] is_a: GO:1902019 ! regulation of cilium-dependent cell motility is_a: GO:2000147 ! positive regulation of cell motility intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060285 ! cilium-dependent cell motility -relationship: positively_regulates GO:0060285 ! cilium-dependent cell motility +intersection_of: RO:0002213 GO:0060285 ! positively regulates cilium-dependent cell motility +relationship: RO:0002213 GO:0060285 ! positively regulates cilium-dependent cell motility created_by: mah creation_date: 2010-10-04T12:41:05Z @@ -139597,8 +139071,8 @@ is_a: GO:0010977 ! negative regulation of neuron projection development is_a: GO:0050773 ! regulation of dendrite development is_a: GO:0051093 ! negative regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0016358 ! dendrite development -relationship: negatively_regulates GO:0016358 ! dendrite development +intersection_of: RO:0002212 GO:0016358 ! negatively regulates dendrite development +relationship: RO:0002212 GO:0016358 ! negatively regulates dendrite development created_by: rl creation_date: 2010-10-07T10:53:15Z @@ -139609,8 +139083,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of branching morphogenesis of a nerve." [GOC:BHF] is_a: GO:0060688 ! regulation of morphogenesis of a branching structure intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048755 ! branching morphogenesis of a nerve -relationship: regulates GO:0048755 ! branching morphogenesis of a nerve +intersection_of: RO:0002211 GO:0048755 ! regulates (processual) branching morphogenesis of a nerve +relationship: RO:0002211 GO:0048755 ! regulates (processual) branching morphogenesis of a nerve created_by: rl creation_date: 2010-10-07T12:07:54Z @@ -139623,8 +139097,8 @@ is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:2000172 ! regulation of branching morphogenesis of a nerve intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048755 ! branching morphogenesis of a nerve -relationship: negatively_regulates GO:0048755 ! branching morphogenesis of a nerve +intersection_of: RO:0002212 GO:0048755 ! negatively regulates branching morphogenesis of a nerve +relationship: RO:0002212 GO:0048755 ! negatively regulates branching morphogenesis of a nerve created_by: rl creation_date: 2010-10-07T12:07:56Z @@ -139637,9 +139111,9 @@ synonym: "regulation of pro-T lymphocyte differentiation" EXACT [GOC:obol] is_a: GO:0045580 ! regulation of T cell differentiation is_a: GO:1905456 ! regulation of lymphoid progenitor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002572 ! pro-T cell differentiation -relationship: regulates GO:0002572 ! pro-T cell differentiation -relationship: regulates GO:0030217 ! T cell differentiation +intersection_of: RO:0002211 GO:0002572 ! regulates (processual) pro-T cell differentiation +relationship: RO:0002211 GO:0002572 ! regulates (processual) pro-T cell differentiation +relationship: RO:0002211 GO:0030217 ! regulates (processual) T cell differentiation created_by: mah creation_date: 2010-10-11T10:24:30Z @@ -139653,9 +139127,9 @@ is_a: GO:0045581 ! negative regulation of T cell differentiation is_a: GO:1905457 ! negative regulation of lymphoid progenitor cell differentiation is_a: GO:2000174 ! regulation of pro-T cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002572 ! pro-T cell differentiation -relationship: negatively_regulates GO:0002572 ! pro-T cell differentiation -relationship: negatively_regulates GO:0030217 ! T cell differentiation +intersection_of: RO:0002212 GO:0002572 ! negatively regulates pro-T cell differentiation +relationship: RO:0002212 GO:0002572 ! negatively regulates pro-T cell differentiation +relationship: RO:0002212 GO:0030217 ! negatively regulates T cell differentiation created_by: mah creation_date: 2010-10-11T10:24:33Z @@ -139669,9 +139143,9 @@ is_a: GO:0045582 ! positive regulation of T cell differentiation is_a: GO:1905458 ! positive regulation of lymphoid progenitor cell differentiation is_a: GO:2000174 ! regulation of pro-T cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002572 ! pro-T cell differentiation -relationship: positively_regulates GO:0002572 ! pro-T cell differentiation -relationship: positively_regulates GO:0030217 ! T cell differentiation +intersection_of: RO:0002213 GO:0002572 ! positively regulates pro-T cell differentiation +relationship: RO:0002213 GO:0002572 ! positively regulates pro-T cell differentiation +relationship: RO:0002213 GO:0030217 ! positively regulates T cell differentiation created_by: mah creation_date: 2010-10-11T10:24:35Z @@ -139682,8 +139156,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of neural precursor cell proliferation." [GOC:dph, GOC:yaf] is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061351 ! neural precursor cell proliferation -relationship: regulates GO:0061351 ! neural precursor cell proliferation +intersection_of: RO:0002211 GO:0061351 ! regulates (processual) neural precursor cell proliferation +relationship: RO:0002211 GO:0061351 ! regulates (processual) neural precursor cell proliferation created_by: dph creation_date: 2010-10-13T12:40:41Z @@ -139695,8 +139169,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:2000177 ! regulation of neural precursor cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0061351 ! neural precursor cell proliferation -relationship: negatively_regulates GO:0061351 ! neural precursor cell proliferation +intersection_of: RO:0002212 GO:0061351 ! negatively regulates neural precursor cell proliferation +relationship: RO:0002212 GO:0061351 ! negatively regulates neural precursor cell proliferation created_by: dph creation_date: 2010-10-13T12:40:43Z @@ -139708,8 +139182,8 @@ def: "Any process that activates or increases the frequency, rate or extent of n is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:2000177 ! regulation of neural precursor cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061351 ! neural precursor cell proliferation -relationship: positively_regulates GO:0061351 ! neural precursor cell proliferation +intersection_of: RO:0002213 GO:0061351 ! positively regulates neural precursor cell proliferation +relationship: RO:0002213 GO:0061351 ! positively regulates neural precursor cell proliferation created_by: dph creation_date: 2010-10-13T12:40:45Z @@ -139721,8 +139195,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0022603 ! regulation of anatomical structure morphogenesis is_a: GO:1901343 ! negative regulation of vasculature development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048514 ! blood vessel morphogenesis -relationship: negatively_regulates GO:0048514 ! blood vessel morphogenesis +intersection_of: RO:0002212 GO:0048514 ! negatively regulates blood vessel morphogenesis +relationship: RO:0002212 GO:0048514 ! negatively regulates blood vessel morphogenesis created_by: dph creation_date: 2010-10-13T12:46:31Z @@ -139739,8 +139213,8 @@ is_a: GO:0010566 ! regulation of ketone biosynthetic process is_a: GO:0046885 ! regulation of hormone biosynthetic process is_a: GO:0050810 ! regulation of steroid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006701 ! progesterone biosynthetic process -relationship: regulates GO:0006701 ! progesterone biosynthetic process +intersection_of: RO:0002211 GO:0006701 ! regulates (processual) progesterone biosynthetic process +relationship: RO:0002211 GO:0006701 ! regulates (processual) progesterone biosynthetic process created_by: dph creation_date: 2010-10-14T07:36:06Z @@ -139758,8 +139232,8 @@ is_a: GO:0032353 ! negative regulation of hormone biosynthetic process is_a: GO:0062014 ! negative regulation of small molecule metabolic process is_a: GO:2000182 ! regulation of progesterone biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006701 ! progesterone biosynthetic process -relationship: negatively_regulates GO:0006701 ! progesterone biosynthetic process +intersection_of: RO:0002212 GO:0006701 ! negatively regulates progesterone biosynthetic process +relationship: RO:0002212 GO:0006701 ! negatively regulates progesterone biosynthetic process created_by: dph creation_date: 2010-10-14T07:36:10Z @@ -139777,8 +139251,8 @@ is_a: GO:0046886 ! positive regulation of hormone biosynthetic process is_a: GO:0062013 ! positive regulation of small molecule metabolic process is_a: GO:2000182 ! regulation of progesterone biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006701 ! progesterone biosynthetic process -relationship: positively_regulates GO:0006701 ! progesterone biosynthetic process +intersection_of: RO:0002213 GO:0006701 ! positively regulates progesterone biosynthetic process +relationship: RO:0002213 GO:0006701 ! positively regulates progesterone biosynthetic process created_by: dph creation_date: 2010-10-14T07:36:14Z @@ -139791,8 +139265,8 @@ synonym: "regulation of phosphate membrane transport" EXACT [] is_a: GO:0010966 ! regulation of phosphate transport is_a: GO:1903795 ! regulation of inorganic anion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035435 ! phosphate ion transmembrane transport -relationship: regulates GO:0035435 ! phosphate ion transmembrane transport +intersection_of: RO:0002211 GO:0035435 ! regulates (processual) phosphate ion transmembrane transport +relationship: RO:0002211 GO:0035435 ! regulates (processual) phosphate ion transmembrane transport created_by: vw creation_date: 2010-10-15T11:33:04Z @@ -139805,8 +139279,8 @@ synonym: "negative regulation of phosphate membrane transport" EXACT [] is_a: GO:1903796 ! negative regulation of inorganic anion transmembrane transport is_a: GO:2000185 ! regulation of phosphate transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035435 ! phosphate ion transmembrane transport -relationship: negatively_regulates GO:0035435 ! phosphate ion transmembrane transport +intersection_of: RO:0002212 GO:0035435 ! negatively regulates phosphate ion transmembrane transport +relationship: RO:0002212 GO:0035435 ! negatively regulates phosphate ion transmembrane transport created_by: vw creation_date: 2010-10-15T11:33:08Z @@ -139819,8 +139293,8 @@ synonym: "positive regulation of phosphate membrane transport" EXACT [] is_a: GO:1903797 ! positive regulation of inorganic anion transmembrane transport is_a: GO:2000185 ! regulation of phosphate transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035435 ! phosphate ion transmembrane transport -relationship: positively_regulates GO:0035435 ! phosphate ion transmembrane transport +intersection_of: RO:0002213 GO:0035435 ! positively regulates phosphate ion transmembrane transport +relationship: RO:0002213 GO:0035435 ! positively regulates phosphate ion transmembrane transport created_by: vw creation_date: 2010-10-15T11:33:10Z @@ -139831,8 +139305,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of fatty acid transport." [GOC:BHF] is_a: GO:0032368 ! regulation of lipid transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0015908 ! fatty acid transport -relationship: regulates GO:0015908 ! fatty acid transport +intersection_of: RO:0002211 GO:0015908 ! regulates (processual) fatty acid transport +relationship: RO:0002211 GO:0015908 ! regulates (processual) fatty acid transport created_by: rl creation_date: 2010-10-18T10:37:13Z @@ -139844,8 +139318,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0032369 ! negative regulation of lipid transport is_a: GO:2000191 ! regulation of fatty acid transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0015908 ! fatty acid transport -relationship: negatively_regulates GO:0015908 ! fatty acid transport +intersection_of: RO:0002212 GO:0015908 ! negatively regulates fatty acid transport +relationship: RO:0002212 GO:0015908 ! negatively regulates fatty acid transport created_by: rl creation_date: 2010-10-18T10:37:15Z @@ -139857,8 +139331,8 @@ def: "Any process that activates or increases the frequency, rate or extent of f is_a: GO:0032370 ! positive regulation of lipid transport is_a: GO:2000191 ! regulation of fatty acid transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0015908 ! fatty acid transport -relationship: positively_regulates GO:0015908 ! fatty acid transport +intersection_of: RO:0002213 GO:0015908 ! positively regulates fatty acid transport +relationship: RO:0002213 GO:0015908 ! positively regulates fatty acid transport created_by: rl creation_date: 2010-10-18T10:37:17Z @@ -139872,8 +139346,8 @@ synonym: "regulation of ovary development" EXACT [GOC:obol] is_a: GO:1905939 ! regulation of gonad development is_a: GO:2000026 ! regulation of multicellular organismal development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008585 ! female gonad development -relationship: regulates GO:0008585 ! female gonad development +intersection_of: RO:0002211 GO:0008585 ! regulates (processual) female gonad development +relationship: RO:0002211 GO:0008585 ! regulates (processual) female gonad development created_by: yaf creation_date: 2010-10-19T10:45:34Z @@ -139887,8 +139361,8 @@ synonym: "negative regulation of ovary development" EXACT [GOC:obol] is_a: GO:1905940 ! negative regulation of gonad development is_a: GO:2000194 ! regulation of female gonad development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008585 ! female gonad development -relationship: negatively_regulates GO:0008585 ! female gonad development +intersection_of: RO:0002212 GO:0008585 ! negatively regulates female gonad development +relationship: RO:0002212 GO:0008585 ! negatively regulates female gonad development created_by: yaf creation_date: 2010-10-19T10:45:38Z @@ -139902,8 +139376,8 @@ synonym: "positive regulation of ovary development" EXACT [GOC:obol] is_a: GO:1905941 ! positive regulation of gonad development is_a: GO:2000194 ! regulation of female gonad development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008585 ! female gonad development -relationship: positively_regulates GO:0008585 ! female gonad development +intersection_of: RO:0002213 GO:0008585 ! positively regulates female gonad development +relationship: RO:0002213 GO:0008585 ! positively regulates female gonad development created_by: yaf creation_date: 2010-10-19T10:45:41Z @@ -139917,8 +139391,8 @@ synonym: "regulation of glutamic acid metabolic process" EXACT [GOC:obol] synonym: "regulation of glutamic acid metabolism" EXACT [GOC:obol] is_a: GO:0000820 ! regulation of glutamine family amino acid metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006536 ! glutamate metabolic process -relationship: regulates GO:0006536 ! glutamate metabolic process +intersection_of: RO:0002211 GO:0006536 ! regulates (processual) glutamate metabolic process +relationship: RO:0002211 GO:0006536 ! regulates (processual) glutamate metabolic process created_by: mah creation_date: 2010-11-03T02:43:51Z @@ -139930,13 +139404,12 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent synonym: "negative regulation of glutamate metabolism" EXACT [GOC:obol] synonym: "negative regulation of glutamic acid metabolic process" EXACT [GOC:obol] synonym: "negative regulation of glutamic acid metabolism" EXACT [GOC:obol] -is_a: GO:0031324 ! negative regulation of cellular metabolic process -is_a: GO:0045763 ! negative regulation of cellular amino acid metabolic process +is_a: GO:0045763 ! negative regulation of amino acid metabolic process is_a: GO:0062014 ! negative regulation of small molecule metabolic process is_a: GO:2000211 ! regulation of glutamate metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006536 ! glutamate metabolic process -relationship: negatively_regulates GO:0006536 ! glutamate metabolic process +intersection_of: RO:0002212 GO:0006536 ! negatively regulates glutamate metabolic process +relationship: RO:0002212 GO:0006536 ! negatively regulates glutamate metabolic process created_by: mah creation_date: 2010-11-03T02:43:55Z @@ -139948,13 +139421,12 @@ def: "Any process that activates or increases the frequency, rate or extent of g synonym: "positive regulation of glutamate metabolism" EXACT [GOC:obol] synonym: "positive regulation of glutamic acid metabolic process" EXACT [GOC:obol] synonym: "positive regulation of glutamic acid metabolism" EXACT [GOC:obol] -is_a: GO:0031325 ! positive regulation of cellular metabolic process is_a: GO:0045764 ! positive regulation of amino acid metabolic process is_a: GO:0062013 ! positive regulation of small molecule metabolic process is_a: GO:2000211 ! regulation of glutamate metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006536 ! glutamate metabolic process -relationship: positively_regulates GO:0006536 ! glutamate metabolic process +intersection_of: RO:0002213 GO:0006536 ! positively regulates glutamate metabolic process +relationship: RO:0002213 GO:0006536 ! positively regulates glutamate metabolic process created_by: mah creation_date: 2010-11-03T02:43:59Z @@ -139966,8 +139438,8 @@ def: "Any process that modulates the frequency, rate or extent of testosterone b is_a: GO:0010566 ! regulation of ketone biosynthetic process is_a: GO:0050810 ! regulation of steroid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061370 ! testosterone biosynthetic process -relationship: regulates GO:0061370 ! testosterone biosynthetic process +intersection_of: RO:0002211 GO:0061370 ! regulates (processual) testosterone biosynthetic process +relationship: RO:0002211 GO:0061370 ! regulates (processual) testosterone biosynthetic process created_by: yaf creation_date: 2010-11-09T10:38:33Z @@ -139977,12 +139449,11 @@ name: negative regulation of testosterone biosynthetic process namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate or extent of testosterone biosynthetic process." [GOC:obol, GOC:yaf] is_a: GO:0010894 ! negative regulation of steroid biosynthetic process -is_a: GO:0031327 ! negative regulation of cellular biosynthetic process is_a: GO:0062014 ! negative regulation of small molecule metabolic process is_a: GO:2000224 ! regulation of testosterone biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0061370 ! testosterone biosynthetic process -relationship: negatively_regulates GO:0061370 ! testosterone biosynthetic process +intersection_of: RO:0002212 GO:0061370 ! negatively regulates testosterone biosynthetic process +relationship: RO:0002212 GO:0061370 ! negatively regulates testosterone biosynthetic process created_by: yaf creation_date: 2010-11-09T10:38:37Z @@ -139994,8 +139465,8 @@ def: "Any process that modulates the frequency, rate or extent of pancreatic A c synonym: "regulation of pancreatic alpha cell differentiation" EXACT [GOC:obol] is_a: GO:0030856 ! regulation of epithelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003310 ! pancreatic A cell differentiation -relationship: regulates GO:0003310 ! pancreatic A cell differentiation +intersection_of: RO:0002211 GO:0003310 ! regulates (processual) pancreatic A cell differentiation +relationship: RO:0002211 GO:0003310 ! regulates (processual) pancreatic A cell differentiation created_by: mah creation_date: 2010-11-09T03:43:37Z @@ -140009,9 +139480,9 @@ is_a: GO:0030857 ! negative regulation of epithelial cell differentiation is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:2000226 ! regulation of pancreatic A cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003310 ! pancreatic A cell differentiation -relationship: negatively_regulates GO:0003310 ! pancreatic A cell differentiation -relationship: negatively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002212 GO:0003310 ! negatively regulates pancreatic A cell differentiation +relationship: RO:0002212 GO:0003310 ! negatively regulates pancreatic A cell differentiation +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process created_by: mah creation_date: 2010-11-09T03:43:40Z @@ -140025,9 +139496,9 @@ is_a: GO:0030858 ! positive regulation of epithelial cell differentiation is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:2000226 ! regulation of pancreatic A cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003310 ! pancreatic A cell differentiation -relationship: positively_regulates GO:0003310 ! pancreatic A cell differentiation -relationship: positively_regulates GO:0032501 ! multicellular organismal process +intersection_of: RO:0002213 GO:0003310 ! positively regulates pancreatic A cell differentiation +relationship: RO:0002213 GO:0003310 ! positively regulates pancreatic A cell differentiation +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process created_by: mah creation_date: 2010-11-09T03:43:42Z @@ -140038,8 +139509,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of reproductive process." [GOC:mah] is_a: GO:0050789 ! regulation of biological process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0022414 ! reproductive process -relationship: regulates GO:0022414 ! reproductive process +intersection_of: RO:0002211 GO:0022414 ! regulates (processual) reproductive process +relationship: RO:0002211 GO:0022414 ! regulates (processual) reproductive process created_by: mah creation_date: 2010-11-10T02:44:02Z @@ -140051,8 +139522,8 @@ def: "Any process that stops, prevents, or reduces the frequency, rate or extent is_a: GO:0048519 ! negative regulation of biological process is_a: GO:2000241 ! regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0022414 ! reproductive process -relationship: negatively_regulates GO:0022414 ! reproductive process +intersection_of: RO:0002212 GO:0022414 ! negatively regulates reproductive process +relationship: RO:0002212 GO:0022414 ! negatively regulates reproductive process created_by: mah creation_date: 2010-11-10T02:44:05Z @@ -140064,8 +139535,8 @@ def: "Any process that activates or increases the frequency, rate or extent of r is_a: GO:0048518 ! positive regulation of biological process is_a: GO:2000241 ! regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0022414 ! reproductive process -relationship: positively_regulates GO:0022414 ! reproductive process +intersection_of: RO:0002213 GO:0022414 ! positively regulates reproductive process +relationship: RO:0002213 GO:0022414 ! positively regulates reproductive process created_by: mah creation_date: 2010-11-10T02:44:08Z @@ -140079,10 +139550,10 @@ is_a: GO:0010454 ! negative regulation of cell fate commitment is_a: GO:0032878 ! regulation of establishment or maintenance of cell polarity is_a: GO:0045769 ! negative regulation of asymmetric cell division intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0045196 ! establishment or maintenance of neuroblast polarity -relationship: negatively_regulates GO:0008356 ! asymmetric cell division -relationship: negatively_regulates GO:0045165 ! cell fate commitment -relationship: negatively_regulates GO:0045196 ! establishment or maintenance of neuroblast polarity +intersection_of: RO:0002212 GO:0045196 ! negatively regulates establishment or maintenance of neuroblast polarity +relationship: RO:0002212 GO:0008356 ! negatively regulates asymmetric cell division +relationship: RO:0002212 GO:0045165 ! negatively regulates cell fate commitment +relationship: RO:0002212 GO:0045196 ! negatively regulates establishment or maintenance of neuroblast polarity created_by: vw creation_date: 2010-11-11T11:40:34Z @@ -140099,8 +139570,8 @@ synonym: "negative regulation of feeding behaviour" EXACT [GOC:obol] is_a: GO:0048521 ! negative regulation of behavior is_a: GO:0060259 ! regulation of feeding behavior intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007631 ! feeding behavior -relationship: negatively_regulates GO:0007631 ! feeding behavior +intersection_of: RO:0002212 GO:0007631 ! negatively regulates feeding behavior +relationship: RO:0002212 GO:0007631 ! negatively regulates feeding behavior created_by: yaf creation_date: 2010-11-18T11:24:14Z @@ -140117,8 +139588,8 @@ synonym: "positive regulation of feeding behaviour" EXACT [GOC:obol] is_a: GO:0048520 ! positive regulation of behavior is_a: GO:0060259 ! regulation of feeding behavior intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007631 ! feeding behavior -relationship: positively_regulates GO:0007631 ! feeding behavior +intersection_of: RO:0002213 GO:0007631 ! positively regulates feeding behavior +relationship: RO:0002213 GO:0007631 ! positively regulates feeding behavior created_by: yaf creation_date: 2010-11-18T11:24:18Z @@ -140129,8 +139600,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of male germ cell proliferation." [GOC:obol] is_a: GO:1905936 ! regulation of germ cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002176 ! male germ cell proliferation -relationship: regulates GO:0002176 ! male germ cell proliferation +intersection_of: RO:0002211 GO:0002176 ! regulates (processual) male germ cell proliferation +relationship: RO:0002211 GO:0002176 ! regulates (processual) male germ cell proliferation created_by: dph creation_date: 2010-11-18T09:29:44Z @@ -140143,8 +139614,8 @@ is_a: GO:1905937 ! negative regulation of germ cell proliferation is_a: GO:2000242 ! negative regulation of reproductive process is_a: GO:2000254 ! regulation of male germ cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002176 ! male germ cell proliferation -relationship: negatively_regulates GO:0002176 ! male germ cell proliferation +intersection_of: RO:0002212 GO:0002176 ! negatively regulates male germ cell proliferation +relationship: RO:0002212 GO:0002176 ! negatively regulates male germ cell proliferation created_by: dph creation_date: 2010-11-18T09:29:47Z @@ -140157,8 +139628,8 @@ is_a: GO:1905938 ! positive regulation of germ cell proliferation is_a: GO:2000243 ! positive regulation of reproductive process is_a: GO:2000254 ! regulation of male germ cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002176 ! male germ cell proliferation -relationship: positively_regulates GO:0002176 ! male germ cell proliferation +intersection_of: RO:0002213 GO:0002176 ! positively regulates male germ cell proliferation +relationship: RO:0002213 GO:0002176 ! positively regulates male germ cell proliferation created_by: dph creation_date: 2010-11-18T09:29:50Z @@ -140170,8 +139641,8 @@ def: "Any process that modulates the frequency, rate or extent of fibroblast apo synonym: "regulation of fibroblast apoptosis" NARROW [] is_a: GO:0042981 ! regulation of apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0044346 ! fibroblast apoptotic process -relationship: regulates GO:0044346 ! fibroblast apoptotic process +intersection_of: RO:0002211 GO:0044346 ! regulates (processual) fibroblast apoptotic process +relationship: RO:0002211 GO:0044346 ! regulates (processual) fibroblast apoptotic process created_by: jl creation_date: 2010-11-23T01:07:23Z @@ -140184,8 +139655,8 @@ synonym: "negative regulation of fibroblast apoptosis" NARROW [] is_a: GO:0043066 ! negative regulation of apoptotic process is_a: GO:2000269 ! regulation of fibroblast apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0044346 ! fibroblast apoptotic process -relationship: negatively_regulates GO:0044346 ! fibroblast apoptotic process +intersection_of: RO:0002212 GO:0044346 ! negatively regulates fibroblast apoptotic process +relationship: RO:0002212 GO:0044346 ! negatively regulates fibroblast apoptotic process created_by: jl creation_date: 2010-11-23T01:07:27Z @@ -140198,8 +139669,8 @@ synonym: "positive regulation of fibroblast apoptosis" NARROW [] is_a: GO:0043065 ! positive regulation of apoptotic process is_a: GO:2000269 ! regulation of fibroblast apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0044346 ! fibroblast apoptotic process -relationship: positively_regulates GO:0044346 ! fibroblast apoptotic process +intersection_of: RO:0002213 GO:0044346 ! positively regulates fibroblast apoptotic process +relationship: RO:0002213 GO:0044346 ! positively regulates fibroblast apoptotic process created_by: jl creation_date: 2010-11-23T01:07:29Z @@ -140208,14 +139679,14 @@ id: GO:2000272 name: negative regulation of signaling receptor activity namespace: biological_process def: "Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity." [GOC:obol] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "negative regulation of receptor activity" BROAD [] synonym: "negative regulation of signalling receptor activity" EXACT [] is_a: GO:0010469 ! regulation of signaling receptor activity is_a: GO:0044092 ! negative regulation of molecular function intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0038023 ! signaling receptor activity -relationship: negatively_regulates GO:0038023 ! signaling receptor activity +intersection_of: RO:0002212 GO:0038023 ! negatively regulates signaling receptor activity +relationship: RO:0002212 GO:0038023 ! negatively regulates signaling receptor activity created_by: bf creation_date: 2010-12-02T09:28:47Z @@ -140224,13 +139695,13 @@ id: GO:2000273 name: positive regulation of signaling receptor activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of signaling receptor activity." [GOC:obol] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "positive regulation of signalling receptor activity" EXACT [] is_a: GO:0010469 ! regulation of signaling receptor activity is_a: GO:0044093 ! positive regulation of molecular function intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0038023 ! signaling receptor activity -relationship: positively_regulates GO:0038023 ! signaling receptor activity +intersection_of: RO:0002213 GO:0038023 ! positively regulates signaling receptor activity +relationship: RO:0002213 GO:0038023 ! positively regulates signaling receptor activity created_by: bf creation_date: 2010-12-02T09:28:50Z @@ -140246,8 +139717,8 @@ synonym: "regulation of DNA synthesis" EXACT [GOC:obol] is_a: GO:0010556 ! regulation of macromolecule biosynthetic process is_a: GO:0051052 ! regulation of DNA metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0071897 ! DNA biosynthetic process -relationship: regulates GO:0071897 ! DNA biosynthetic process +intersection_of: RO:0002211 GO:0071897 ! regulates (processual) DNA biosynthetic process +relationship: RO:0002211 GO:0071897 ! regulates (processual) DNA biosynthetic process created_by: yaf creation_date: 2010-12-08T04:48:15Z @@ -140264,26 +139735,27 @@ is_a: GO:0010558 ! negative regulation of macromolecule biosynthetic process is_a: GO:0051053 ! negative regulation of DNA metabolic process is_a: GO:2000278 ! regulation of DNA biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0071897 ! DNA biosynthetic process -relationship: negatively_regulates GO:0071897 ! DNA biosynthetic process +intersection_of: RO:0002212 GO:0071897 ! negatively regulates DNA biosynthetic process +relationship: RO:0002212 GO:0071897 ! negatively regulates DNA biosynthetic process created_by: yaf creation_date: 2010-12-08T04:48:20Z [Term] id: GO:2000282 -name: regulation of cellular amino acid biosynthetic process +name: regulation of amino acid biosynthetic process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cellular amino acid biosynthetic process." [GOC:obol] -synonym: "regulation of amino acid biosynthetic process" EXACT [GOC:obol] synonym: "regulation of cellular amino acid anabolism" EXACT [GOC:obol] synonym: "regulation of cellular amino acid biosynthesis" EXACT [GOC:obol] +synonym: "regulation of cellular amino acid biosynthetic process" EXACT [GOC:obol] synonym: "regulation of cellular amino acid formation" EXACT [GOC:obol] synonym: "regulation of cellular amino acid synthesis" EXACT [GOC:obol] -is_a: GO:0006521 ! regulation of cellular amino acid metabolic process +is_a: GO:0006521 ! regulation of amino acid metabolic process is_a: GO:0009889 ! regulation of biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008652 ! amino acid biosynthetic process -relationship: regulates GO:0008652 ! amino acid biosynthetic process +intersection_of: RO:0002211 GO:0008652 ! regulates (processual) amino acid biosynthetic process +relationship: RO:0002211 GO:0008652 ! regulates (processual) amino acid biosynthetic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI created_by: vw creation_date: 2010-12-10T11:54:19Z @@ -140298,11 +139770,11 @@ synonym: "negative regulation of amino acid formation" EXACT [GOC:obol] synonym: "negative regulation of amino acid synthesis" EXACT [GOC:obol] synonym: "negative regulation of cellular amino acid biosynthetic process" EXACT [GOC:obol] is_a: GO:0009890 ! negative regulation of biosynthetic process -is_a: GO:0045763 ! negative regulation of cellular amino acid metabolic process -is_a: GO:2000282 ! regulation of cellular amino acid biosynthetic process +is_a: GO:0045763 ! negative regulation of amino acid metabolic process +is_a: GO:2000282 ! regulation of amino acid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008652 ! amino acid biosynthetic process -relationship: negatively_regulates GO:0008652 ! amino acid biosynthetic process +intersection_of: RO:0002212 GO:0008652 ! negatively regulates amino acid biosynthetic process +relationship: RO:0002212 GO:0008652 ! negatively regulates amino acid biosynthetic process created_by: vw creation_date: 2010-12-10T11:54:23Z @@ -140318,10 +139790,10 @@ synonym: "positive regulation of amino acid synthesis" EXACT [GOC:obol] synonym: "positive regulation of cellular amino acid biosynthetic process" EXACT [GOC:obol] is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:0045764 ! positive regulation of amino acid metabolic process -is_a: GO:2000282 ! regulation of cellular amino acid biosynthetic process +is_a: GO:2000282 ! regulation of amino acid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008652 ! amino acid biosynthetic process -relationship: positively_regulates GO:0008652 ! amino acid biosynthetic process +intersection_of: RO:0002213 GO:0008652 ! positively regulates amino acid biosynthetic process +relationship: RO:0002213 GO:0008652 ! positively regulates amino acid biosynthetic process created_by: vw creation_date: 2010-12-10T11:54:27Z @@ -140333,8 +139805,8 @@ def: "Any process that activates or increases the frequency, rate or extent of m is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:2000290 ! regulation of myotome development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061055 ! myotome development -relationship: positively_regulates GO:0061055 ! myotome development +intersection_of: RO:0002213 GO:0061055 ! positively regulates myotome development +relationship: RO:0002213 GO:0061055 ! positively regulates myotome development created_by: rl creation_date: 2010-12-16T05:17:15Z @@ -140346,8 +139818,8 @@ def: "Any process that activates or increases the frequency, rate or extent of m is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:2000291 ! regulation of myoblast proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051450 ! myoblast proliferation -relationship: positively_regulates GO:0051450 ! myoblast proliferation +intersection_of: RO:0002213 GO:0051450 ! positively regulates myoblast proliferation +relationship: RO:0002213 GO:0051450 ! positively regulates myoblast proliferation created_by: rl creation_date: 2010-12-16T05:20:52Z @@ -140358,8 +139830,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of myotome development." [GOC:mah] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061055 ! myotome development -relationship: regulates GO:0061055 ! myotome development +intersection_of: RO:0002211 GO:0061055 ! regulates (processual) myotome development +relationship: RO:0002211 GO:0061055 ! regulates (processual) myotome development created_by: mah creation_date: 2010-12-20T10:22:05Z @@ -140370,8 +139842,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of myoblast proliferation." [GOC:mah] is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0051450 ! myoblast proliferation -relationship: regulates GO:0051450 ! myoblast proliferation +intersection_of: RO:0002211 GO:0051450 ! regulates (processual) myoblast proliferation +relationship: RO:0002211 GO:0051450 ! regulates (processual) myoblast proliferation created_by: mah creation_date: 2010-12-20T10:34:26Z @@ -140383,8 +139855,8 @@ def: "Any process that modulates the frequency, rate or extent of defecation." [ is_a: GO:0044058 ! regulation of digestive system process is_a: GO:0044062 ! regulation of excretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030421 ! defecation -relationship: regulates GO:0030421 ! defecation +intersection_of: RO:0002211 GO:0030421 ! regulates (processual) defecation +relationship: RO:0002211 GO:0030421 ! regulates (processual) defecation created_by: bf creation_date: 2010-12-21T09:23:08Z @@ -140397,8 +139869,8 @@ is_a: GO:0051048 ! negative regulation of secretion is_a: GO:0060457 ! negative regulation of digestive system process is_a: GO:2000292 ! regulation of defecation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030421 ! defecation -relationship: negatively_regulates GO:0030421 ! defecation +intersection_of: RO:0002212 GO:0030421 ! negatively regulates defecation +relationship: RO:0002212 GO:0030421 ! negatively regulates defecation created_by: bf creation_date: 2010-12-21T09:23:13Z @@ -140411,8 +139883,8 @@ is_a: GO:0051047 ! positive regulation of secretion is_a: GO:0060456 ! positive regulation of digestive system process is_a: GO:2000292 ! regulation of defecation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030421 ! defecation -relationship: positively_regulates GO:0030421 ! defecation +intersection_of: RO:0002213 GO:0030421 ! positively regulates defecation +relationship: RO:0002213 GO:0030421 ! positively regulates defecation created_by: bf creation_date: 2010-12-21T09:23:16Z @@ -140425,9 +139897,9 @@ subset: goslim_synapse is_a: GO:0046928 ! regulation of neurotransmitter secretion is_a: GO:1903305 ! regulation of regulated secretory pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0016079 ! synaptic vesicle exocytosis -relationship: regulates GO:0007269 ! neurotransmitter secretion -relationship: regulates GO:0016079 ! synaptic vesicle exocytosis +intersection_of: RO:0002211 GO:0016079 ! regulates (processual) synaptic vesicle exocytosis +relationship: RO:0002211 GO:0007269 ! regulates (processual) neurotransmitter secretion +relationship: RO:0002211 GO:0016079 ! regulates (processual) synaptic vesicle exocytosis created_by: dph creation_date: 2011-01-03T08:20:40Z @@ -140439,8 +139911,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:1903306 ! negative regulation of regulated secretory pathway is_a: GO:2000300 ! regulation of synaptic vesicle exocytosis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0016079 ! synaptic vesicle exocytosis -relationship: negatively_regulates GO:0016079 ! synaptic vesicle exocytosis +intersection_of: RO:0002212 GO:0016079 ! negatively regulates synaptic vesicle exocytosis +relationship: RO:0002212 GO:0016079 ! negatively regulates synaptic vesicle exocytosis created_by: dph creation_date: 2011-01-03T08:21:00Z @@ -140453,9 +139925,9 @@ is_a: GO:0001956 ! positive regulation of neurotransmitter secretion is_a: GO:1903307 ! positive regulation of regulated secretory pathway is_a: GO:2000300 ! regulation of synaptic vesicle exocytosis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0016079 ! synaptic vesicle exocytosis -relationship: positively_regulates GO:0007269 ! neurotransmitter secretion -relationship: positively_regulates GO:0016079 ! synaptic vesicle exocytosis +intersection_of: RO:0002213 GO:0016079 ! positively regulates synaptic vesicle exocytosis +relationship: RO:0002213 GO:0007269 ! positively regulates neurotransmitter secretion +relationship: RO:0002213 GO:0016079 ! positively regulates synaptic vesicle exocytosis created_by: dph creation_date: 2011-01-03T08:21:14Z @@ -140471,8 +139943,8 @@ synonym: "regulation of ceramide synthesis" EXACT [GOC:obol] is_a: GO:0034248 ! regulation of amide metabolic process is_a: GO:0090153 ! regulation of sphingolipid biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0046513 ! ceramide biosynthetic process -relationship: regulates GO:0046513 ! ceramide biosynthetic process +intersection_of: RO:0002211 GO:0046513 ! regulates (processual) ceramide biosynthetic process +relationship: RO:0002211 GO:0046513 ! regulates (processual) ceramide biosynthetic process created_by: dph creation_date: 2011-01-04T02:37:12Z @@ -140489,52 +139961,11 @@ is_a: GO:0034250 ! positive regulation of amide metabolic process is_a: GO:0090154 ! positive regulation of sphingolipid biosynthetic process is_a: GO:2000303 ! regulation of ceramide biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0046513 ! ceramide biosynthetic process -relationship: positively_regulates GO:0046513 ! ceramide biosynthetic process +intersection_of: RO:0002213 GO:0046513 ! positively regulates ceramide biosynthetic process +relationship: RO:0002213 GO:0046513 ! positively regulates ceramide biosynthetic process created_by: dph creation_date: 2011-01-04T02:37:32Z -[Term] -id: GO:2000322 -name: regulation of glucocorticoid receptor signaling pathway -namespace: biological_process -def: "Any process that modulates the frequency, rate or extent of glucocorticoid receptor signaling pathway." [GOC:BHF] -synonym: "regulation of glucocorticoid receptor signalling pathway" EXACT [GOC:obol] -is_a: GO:0033143 ! regulation of intracellular steroid hormone receptor signaling pathway -intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042921 ! nuclear receptor-mediated glucocorticoid signaling pathway -relationship: regulates GO:0042921 ! nuclear receptor-mediated glucocorticoid signaling pathway -created_by: vk -creation_date: 2011-01-18T04:38:10Z - -[Term] -id: GO:2000323 -name: negative regulation of glucocorticoid receptor signaling pathway -namespace: biological_process -def: "Any process that stops, prevents or reduces the frequency, rate or extent of glucocorticoid receptor signaling pathway." [GOC:BHF] -synonym: "negative regulation of glucocorticoid receptor signalling pathway" EXACT [GOC:obol] -is_a: GO:0033144 ! negative regulation of intracellular steroid hormone receptor signaling pathway -is_a: GO:2000322 ! regulation of glucocorticoid receptor signaling pathway -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042921 ! nuclear receptor-mediated glucocorticoid signaling pathway -relationship: negatively_regulates GO:0042921 ! nuclear receptor-mediated glucocorticoid signaling pathway -created_by: vk -creation_date: 2011-01-18T04:38:43Z - -[Term] -id: GO:2000324 -name: positive regulation of glucocorticoid receptor signaling pathway -namespace: biological_process -def: "Any process that activates or increases the frequency, rate or extent of glucocorticoid receptor signaling pathway." [GOC:BHF] -synonym: "positive regulation of glucocorticoid receptor signalling pathway" EXACT [GOC:obol] -is_a: GO:0033145 ! positive regulation of intracellular steroid hormone receptor signaling pathway -is_a: GO:2000322 ! regulation of glucocorticoid receptor signaling pathway -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042921 ! nuclear receptor-mediated glucocorticoid signaling pathway -relationship: positively_regulates GO:0042921 ! nuclear receptor-mediated glucocorticoid signaling pathway -created_by: vk -creation_date: 2011-01-18T04:39:05Z - [Term] id: GO:2000351 name: regulation of endothelial cell apoptotic process @@ -140548,8 +139979,8 @@ synonym: "regulation of programmed cell death of endothelial cells by apoptosis" synonym: "regulation of programmed cell death, endothelial cells" EXACT [GOC:obol] is_a: GO:0042981 ! regulation of apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072577 ! endothelial cell apoptotic process -relationship: regulates GO:0072577 ! endothelial cell apoptotic process +intersection_of: RO:0002211 GO:0072577 ! regulates (processual) endothelial cell apoptotic process +relationship: RO:0002211 GO:0072577 ! regulates (processual) endothelial cell apoptotic process created_by: mah creation_date: 2011-02-03T10:43:16Z @@ -140567,8 +139998,8 @@ synonym: "negative regulation of programmed cell death, endothelial cells" EXACT is_a: GO:0043066 ! negative regulation of apoptotic process is_a: GO:2000351 ! regulation of endothelial cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0072577 ! endothelial cell apoptotic process -relationship: negatively_regulates GO:0072577 ! endothelial cell apoptotic process +intersection_of: RO:0002212 GO:0072577 ! negatively regulates endothelial cell apoptotic process +relationship: RO:0002212 GO:0072577 ! negatively regulates endothelial cell apoptotic process created_by: mah creation_date: 2011-02-03T10:43:20Z @@ -140586,8 +140017,8 @@ synonym: "positive regulation of programmed cell death, endothelial cells" EXACT is_a: GO:0043065 ! positive regulation of apoptotic process is_a: GO:2000351 ! regulation of endothelial cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0072577 ! endothelial cell apoptotic process -relationship: positively_regulates GO:0072577 ! endothelial cell apoptotic process +intersection_of: RO:0002213 GO:0072577 ! positively regulates endothelial cell apoptotic process +relationship: RO:0002213 GO:0072577 ! positively regulates endothelial cell apoptotic process created_by: mah creation_date: 2011-02-03T10:43:23Z @@ -140599,8 +140030,8 @@ def: "Any process that modulates the frequency, rate or extent of ovarian follic synonym: "regulation of follicular phase" RELATED [GOC:obol] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001541 ! ovarian follicle development -relationship: regulates GO:0001541 ! ovarian follicle development +intersection_of: RO:0002211 GO:0001541 ! regulates (processual) ovarian follicle development +relationship: RO:0002211 GO:0001541 ! regulates (processual) ovarian follicle development created_by: yaf creation_date: 2011-02-03T02:01:28Z @@ -140613,8 +140044,8 @@ synonym: "negative regulation of follicular phase" RELATED [GOC:obol] is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:2000354 ! regulation of ovarian follicle development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001541 ! ovarian follicle development -relationship: negatively_regulates GO:0001541 ! ovarian follicle development +intersection_of: RO:0002212 GO:0001541 ! negatively regulates ovarian follicle development +relationship: RO:0002212 GO:0001541 ! negatively regulates ovarian follicle development created_by: yaf creation_date: 2011-02-03T02:01:32Z @@ -140625,10 +140056,10 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of oxygen metabolic process." [GOC:mah] synonym: "regulation of diatomic oxygen metabolic process" EXACT [GOC:obol] synonym: "regulation of oxygen metabolism" EXACT [GOC:obol] -is_a: GO:0031323 ! regulation of cellular metabolic process +is_a: GO:0019222 ! regulation of metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072592 ! oxygen metabolic process -relationship: regulates GO:0072592 ! oxygen metabolic process +intersection_of: RO:0002211 GO:0072592 ! regulates (processual) oxygen metabolic process +relationship: RO:0002211 GO:0072592 ! regulates (processual) oxygen metabolic process created_by: mah creation_date: 2011-02-11T02:03:32Z @@ -140639,11 +140070,11 @@ namespace: biological_process def: "Any process that stops, prevents or reduces the frequency, rate or extent of oxygen metabolic process." [GOC:mah] synonym: "negative regulation of diatomic oxygen metabolic process" EXACT [GOC:obol] synonym: "negative regulation of oxygen metabolism" EXACT [GOC:obol] -is_a: GO:0031324 ! negative regulation of cellular metabolic process +is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:2000374 ! regulation of oxygen metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0072592 ! oxygen metabolic process -relationship: negatively_regulates GO:0072592 ! oxygen metabolic process +intersection_of: RO:0002212 GO:0072592 ! negatively regulates oxygen metabolic process +relationship: RO:0002212 GO:0072592 ! negatively regulates oxygen metabolic process created_by: mah creation_date: 2011-02-11T02:03:44Z @@ -140654,11 +140085,11 @@ namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of oxygen metabolic process." [GOC:mah] synonym: "positive regulation of diatomic oxygen metabolic process" EXACT [GOC:obol] synonym: "positive regulation of oxygen metabolism" EXACT [GOC:obol] -is_a: GO:0031325 ! positive regulation of cellular metabolic process +is_a: GO:0009893 ! positive regulation of metabolic process is_a: GO:2000374 ! regulation of oxygen metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0072592 ! oxygen metabolic process -relationship: positively_regulates GO:0072592 ! oxygen metabolic process +intersection_of: RO:0002213 GO:0072592 ! positively regulates oxygen metabolic process +relationship: RO:0002213 GO:0072592 ! positively regulates oxygen metabolic process created_by: mah creation_date: 2011-02-11T02:03:52Z @@ -140669,8 +140100,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of mesoderm development." [GOC:BHF] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007498 ! mesoderm development -relationship: regulates GO:0007498 ! mesoderm development +intersection_of: RO:0002211 GO:0007498 ! regulates (processual) mesoderm development +relationship: RO:0002211 GO:0007498 ! regulates (processual) mesoderm development created_by: vk creation_date: 2011-02-15T03:09:46Z @@ -140682,8 +140113,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:2000380 ! regulation of mesoderm development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007498 ! mesoderm development -relationship: negatively_regulates GO:0007498 ! mesoderm development +intersection_of: RO:0002212 GO:0007498 ! negatively regulates mesoderm development +relationship: RO:0002212 GO:0007498 ! negatively regulates mesoderm development created_by: vk creation_date: 2011-02-15T03:10:02Z @@ -140695,8 +140126,8 @@ def: "Any process that activates or increases the frequency, rate or extent of m is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:2000380 ! regulation of mesoderm development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007498 ! mesoderm development -relationship: positively_regulates GO:0007498 ! mesoderm development +intersection_of: RO:0002213 GO:0007498 ! positively regulates mesoderm development +relationship: RO:0002213 GO:0007498 ! positively regulates mesoderm development created_by: vk creation_date: 2011-02-15T03:10:12Z @@ -140707,8 +140138,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of ectoderm development." [GOC:BHF] is_a: GO:0050793 ! regulation of developmental process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007398 ! ectoderm development -relationship: regulates GO:0007398 ! ectoderm development +intersection_of: RO:0002211 GO:0007398 ! regulates (processual) ectoderm development +relationship: RO:0002211 GO:0007398 ! regulates (processual) ectoderm development created_by: vk creation_date: 2011-02-15T03:17:10Z @@ -140720,8 +140151,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:2000383 ! regulation of ectoderm development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007398 ! ectoderm development -relationship: negatively_regulates GO:0007398 ! ectoderm development +intersection_of: RO:0002212 GO:0007398 ! negatively regulates ectoderm development +relationship: RO:0002212 GO:0007398 ! negatively regulates ectoderm development created_by: vk creation_date: 2011-02-15T03:17:27Z @@ -140733,8 +140164,8 @@ def: "Any process that activates or increases the frequency, rate or extent of e is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:2000383 ! regulation of ectoderm development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007398 ! ectoderm development -relationship: positively_regulates GO:0007398 ! ectoderm development +intersection_of: RO:0002213 GO:0007398 ! positively regulates ectoderm development +relationship: RO:0002213 GO:0007398 ! positively regulates ectoderm development created_by: vk creation_date: 2011-02-15T03:17:39Z @@ -140747,8 +140178,8 @@ synonym: "positive regulation of follicular phase" RELATED [GOC:obol] is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:2000354 ! regulation of ovarian follicle development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001541 ! ovarian follicle development -relationship: positively_regulates GO:0001541 ! ovarian follicle development +intersection_of: RO:0002213 GO:0001541 ! positively regulates ovarian follicle development +relationship: RO:0002213 GO:0001541 ! positively regulates ovarian follicle development created_by: yaf creation_date: 2011-02-16T02:21:21Z @@ -140760,8 +140191,8 @@ def: "Any process that modulates the frequency, rate or extent of antral ovarian is_a: GO:0048638 ! regulation of developmental growth is_a: GO:2000241 ! regulation of reproductive process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001547 ! antral ovarian follicle growth -relationship: regulates GO:0001547 ! antral ovarian follicle growth +intersection_of: RO:0002211 GO:0001547 ! regulates (processual) antral ovarian follicle growth +relationship: RO:0002211 GO:0001547 ! regulates (processual) antral ovarian follicle growth created_by: yaf creation_date: 2011-02-16T04:53:43Z @@ -140774,8 +140205,8 @@ is_a: GO:0048639 ! positive regulation of developmental growth is_a: GO:2000243 ! positive regulation of reproductive process is_a: GO:2000387 ! regulation of antral ovarian follicle growth intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001547 ! antral ovarian follicle growth -relationship: positively_regulates GO:0001547 ! antral ovarian follicle growth +intersection_of: RO:0002213 GO:0001547 ! positively regulates antral ovarian follicle growth +relationship: RO:0002213 GO:0001547 ! positively regulates antral ovarian follicle growth created_by: yaf creation_date: 2011-02-16T04:54:01Z @@ -140786,8 +140217,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of lymphocyte migration." [GOC:mah] is_a: GO:0071675 ! regulation of mononuclear cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072676 ! lymphocyte migration -relationship: regulates GO:0072676 ! lymphocyte migration +intersection_of: RO:0002211 GO:0072676 ! regulates (processual) lymphocyte migration +relationship: RO:0002211 GO:0072676 ! regulates (processual) lymphocyte migration created_by: mah creation_date: 2011-02-23T10:45:19Z @@ -140799,8 +140230,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0071676 ! negative regulation of mononuclear cell migration is_a: GO:2000401 ! regulation of lymphocyte migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0072676 ! lymphocyte migration -relationship: negatively_regulates GO:0072676 ! lymphocyte migration +intersection_of: RO:0002212 GO:0072676 ! negatively regulates lymphocyte migration +relationship: RO:0002212 GO:0072676 ! negatively regulates lymphocyte migration created_by: mah creation_date: 2011-02-23T10:45:47Z @@ -140812,8 +140243,8 @@ def: "Any process that activates or increases the frequency, rate or extent of l is_a: GO:0071677 ! positive regulation of mononuclear cell migration is_a: GO:2000401 ! regulation of lymphocyte migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0072676 ! lymphocyte migration -relationship: positively_regulates GO:0072676 ! lymphocyte migration +intersection_of: RO:0002213 GO:0072676 ! positively regulates lymphocyte migration +relationship: RO:0002213 GO:0072676 ! positively regulates lymphocyte migration created_by: mah creation_date: 2011-02-23T10:46:06Z @@ -140827,8 +140258,8 @@ synonym: "regulation of T-cell migration" EXACT [GOC:obol] synonym: "regulation of T-lymphocyte migration" EXACT [GOC:obol] is_a: GO:2000401 ! regulation of lymphocyte migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072678 ! T cell migration -relationship: regulates GO:0072678 ! T cell migration +intersection_of: RO:0002211 GO:0072678 ! regulates (processual) T cell migration +relationship: RO:0002211 GO:0072678 ! regulates (processual) T cell migration created_by: mah creation_date: 2011-02-23T10:48:24Z @@ -140843,8 +140274,8 @@ synonym: "negative regulation of T-lymphocyte migration" EXACT [GOC:obol] is_a: GO:2000402 ! negative regulation of lymphocyte migration is_a: GO:2000404 ! regulation of T cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0072678 ! T cell migration -relationship: negatively_regulates GO:0072678 ! T cell migration +intersection_of: RO:0002212 GO:0072678 ! negatively regulates T cell migration +relationship: RO:0002212 GO:0072678 ! negatively regulates T cell migration created_by: mah creation_date: 2011-02-23T10:48:52Z @@ -140859,8 +140290,8 @@ synonym: "positive regulation of T-lymphocyte migration" EXACT [GOC:obol] is_a: GO:2000403 ! positive regulation of lymphocyte migration is_a: GO:2000404 ! regulation of T cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0072678 ! T cell migration -relationship: positively_regulates GO:0072678 ! T cell migration +intersection_of: RO:0002213 GO:0072678 ! positively regulates T cell migration +relationship: RO:0002213 GO:0072678 ! positively regulates T cell migration created_by: mah creation_date: 2011-02-23T10:49:12Z @@ -140876,8 +140307,8 @@ synonym: "regulation of immature T-lymphocyte migration" RELATED [GOC:obol] synonym: "regulation of thymic lymphocyte migration" EXACT [GOC:obol] is_a: GO:2000404 ! regulation of T cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072679 ! thymocyte migration -relationship: regulates GO:0072679 ! thymocyte migration +intersection_of: RO:0002211 GO:0072679 ! regulates (processual) thymocyte migration +relationship: RO:0002211 GO:0072679 ! regulates (processual) thymocyte migration created_by: mah creation_date: 2011-02-23T01:33:32Z @@ -140894,8 +140325,8 @@ synonym: "negative regulation of thymic lymphocyte migration" EXACT [GOC:obol] is_a: GO:2000405 ! negative regulation of T cell migration is_a: GO:2000410 ! regulation of thymocyte migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0072679 ! thymocyte migration -relationship: negatively_regulates GO:0072679 ! thymocyte migration +intersection_of: RO:0002212 GO:0072679 ! negatively regulates thymocyte migration +relationship: RO:0002212 GO:0072679 ! negatively regulates thymocyte migration created_by: mah creation_date: 2011-02-23T01:34:01Z @@ -140912,8 +140343,8 @@ synonym: "positive regulation of thymic lymphocyte migration" EXACT [GOC:obol] is_a: GO:2000406 ! positive regulation of T cell migration is_a: GO:2000410 ! regulation of thymocyte migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0072679 ! thymocyte migration -relationship: positively_regulates GO:0072679 ! thymocyte migration +intersection_of: RO:0002213 GO:0072679 ! positively regulates thymocyte migration +relationship: RO:0002213 GO:0072679 ! positively regulates thymocyte migration created_by: mah creation_date: 2011-02-23T01:34:23Z @@ -140925,8 +140356,8 @@ def: "Any process that modulates the frequency, rate or extent of astrocyte chem is_a: GO:0050920 ! regulation of chemotaxis is_a: GO:1903975 ! regulation of glial cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035700 ! astrocyte chemotaxis -relationship: regulates GO:0035700 ! astrocyte chemotaxis +intersection_of: RO:0002211 GO:0035700 ! regulates (processual) astrocyte chemotaxis +relationship: RO:0002211 GO:0035700 ! regulates (processual) astrocyte chemotaxis created_by: bf creation_date: 2011-03-04T10:53:50Z @@ -140939,8 +140370,8 @@ is_a: GO:0050922 ! negative regulation of chemotaxis is_a: GO:1903976 ! negative regulation of glial cell migration is_a: GO:2000458 ! regulation of astrocyte chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035700 ! astrocyte chemotaxis -relationship: negatively_regulates GO:0035700 ! astrocyte chemotaxis +intersection_of: RO:0002212 GO:0035700 ! negatively regulates astrocyte chemotaxis +relationship: RO:0002212 GO:0035700 ! negatively regulates astrocyte chemotaxis created_by: bf creation_date: 2011-03-04T10:54:28Z @@ -140954,9 +140385,9 @@ synonym: "positive regulation of excitatory post-synaptic membrane potential" EX is_a: GO:0009967 ! positive regulation of signal transduction is_a: GO:0098815 ! modulation of excitatory postsynaptic potential intersection_of: GO:0050789 ! regulation of biological process -intersection_of: positively_regulates GO:0060079 ! excitatory postsynaptic potential -relationship: positively_regulates GO:0007165 ! signal transduction -relationship: positively_regulates GO:0060079 ! excitatory postsynaptic potential +intersection_of: RO:0002213 GO:0060079 ! positively regulates excitatory postsynaptic potential +relationship: RO:0002213 GO:0007165 ! positively regulates signal transduction +relationship: RO:0002213 GO:0060079 ! positively regulates excitatory postsynaptic potential created_by: rl creation_date: 2011-03-04T02:43:32Z @@ -140969,8 +140400,8 @@ is_a: GO:0050921 ! positive regulation of chemotaxis is_a: GO:1903977 ! positive regulation of glial cell migration is_a: GO:2000458 ! regulation of astrocyte chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035700 ! astrocyte chemotaxis -relationship: positively_regulates GO:0035700 ! astrocyte chemotaxis +intersection_of: RO:0002213 GO:0035700 ! positively regulates astrocyte chemotaxis +relationship: RO:0002213 GO:0035700 ! positively regulates astrocyte chemotaxis created_by: bf creation_date: 2011-03-04T04:43:29Z @@ -140982,8 +140413,8 @@ def: "Any process that modulates the frequency, rate or extent of hematopoietic synonym: "regulation of hemopoietic stem cell migration" EXACT [GOC:obol] is_a: GO:0030334 ! regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035701 ! hematopoietic stem cell migration -relationship: regulates GO:0035701 ! hematopoietic stem cell migration +intersection_of: RO:0002211 GO:0035701 ! regulates (processual) hematopoietic stem cell migration +relationship: RO:0002211 GO:0035701 ! regulates (processual) hematopoietic stem cell migration created_by: bf creation_date: 2011-03-09T09:34:08Z @@ -140996,8 +140427,8 @@ synonym: "negative regulation of hemopoietic stem cell migration" EXACT [GOC:obo is_a: GO:0030336 ! negative regulation of cell migration is_a: GO:2000471 ! regulation of hematopoietic stem cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035701 ! hematopoietic stem cell migration -relationship: negatively_regulates GO:0035701 ! hematopoietic stem cell migration +intersection_of: RO:0002212 GO:0035701 ! negatively regulates hematopoietic stem cell migration +relationship: RO:0002212 GO:0035701 ! negatively regulates hematopoietic stem cell migration created_by: bf creation_date: 2011-03-09T09:34:54Z @@ -141010,8 +140441,8 @@ synonym: "positive regulation of hemopoietic stem cell migration" EXACT [GOC:obo is_a: GO:0030335 ! positive regulation of cell migration is_a: GO:2000471 ! regulation of hematopoietic stem cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035701 ! hematopoietic stem cell migration -relationship: positively_regulates GO:0035701 ! hematopoietic stem cell migration +intersection_of: RO:0002213 GO:0035701 ! positively regulates hematopoietic stem cell migration +relationship: RO:0002213 GO:0035701 ! positively regulates hematopoietic stem cell migration created_by: bf creation_date: 2011-03-09T09:35:25Z @@ -141023,8 +140454,8 @@ def: "Any process that modulates the frequency, rate or extent of metanephric gl synonym: "regulation of metanephric glomerular visceral epithelial cell development" EXACT [] is_a: GO:0060284 ! regulation of cell development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0072249 ! metanephric podocyte development -relationship: regulates GO:0072249 ! metanephric podocyte development +intersection_of: RO:0002211 GO:0072249 ! regulates (processual) metanephric podocyte development +relationship: RO:0002211 GO:0072249 ! regulates (processual) metanephric podocyte development property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23000" xsd:anyURI created_by: yaf creation_date: 2011-03-09T05:16:40Z @@ -141038,8 +140469,8 @@ synonym: "positive regulation of metanephric glomerular visceral epithelial cell is_a: GO:0010720 ! positive regulation of cell development is_a: GO:2000477 ! regulation of metanephric podocyte development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0072249 ! metanephric podocyte development -relationship: positively_regulates GO:0072249 ! metanephric podocyte development +intersection_of: RO:0002213 GO:0072249 ! positively regulates metanephric podocyte development +relationship: RO:0002213 GO:0072249 ! positively regulates metanephric podocyte development property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23000" xsd:anyURI created_by: yaf creation_date: 2011-03-09T05:17:26Z @@ -141051,8 +140482,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of hepatic stellate cell activation." [GOC:obol] is_a: GO:0050865 ! regulation of cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035733 ! hepatic stellate cell activation -relationship: regulates GO:0035733 ! hepatic stellate cell activation +intersection_of: RO:0002211 GO:0035733 ! regulates (processual) hepatic stellate cell activation +relationship: RO:0002211 GO:0035733 ! regulates (processual) hepatic stellate cell activation created_by: bf creation_date: 2011-03-14T03:48:32Z @@ -141064,8 +140495,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0050866 ! negative regulation of cell activation is_a: GO:2000489 ! regulation of hepatic stellate cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035733 ! hepatic stellate cell activation -relationship: negatively_regulates GO:0035733 ! hepatic stellate cell activation +intersection_of: RO:0002212 GO:0035733 ! negatively regulates hepatic stellate cell activation +relationship: RO:0002212 GO:0035733 ! negatively regulates hepatic stellate cell activation created_by: bf creation_date: 2011-03-14T03:49:18Z @@ -141077,8 +140508,8 @@ def: "Any process that activates or increases the frequency, rate or extent of h is_a: GO:0050867 ! positive regulation of cell activation is_a: GO:2000489 ! regulation of hepatic stellate cell activation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035733 ! hepatic stellate cell activation -relationship: positively_regulates GO:0035733 ! hepatic stellate cell activation +intersection_of: RO:0002213 GO:0035733 ! positively regulates hepatic stellate cell activation +relationship: RO:0002213 GO:0035733 ! positively regulates hepatic stellate cell activation created_by: bf creation_date: 2011-03-14T03:49:48Z @@ -141089,8 +140520,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cell proliferation involved in compound eye morphogenesis." [GOC:obol] is_a: GO:0042127 ! regulation of cell population proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035736 ! cell proliferation involved in compound eye morphogenesis -relationship: regulates GO:0035736 ! cell proliferation involved in compound eye morphogenesis +intersection_of: RO:0002211 GO:0035736 ! regulates (processual) cell proliferation involved in compound eye morphogenesis +relationship: RO:0002211 GO:0035736 ! regulates (processual) cell proliferation involved in compound eye morphogenesis created_by: bf creation_date: 2011-03-18T02:18:34Z @@ -141102,8 +140533,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:2000495 ! regulation of cell proliferation involved in compound eye morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035736 ! cell proliferation involved in compound eye morphogenesis -relationship: negatively_regulates GO:0035736 ! cell proliferation involved in compound eye morphogenesis +intersection_of: RO:0002212 GO:0035736 ! negatively regulates cell proliferation involved in compound eye morphogenesis +relationship: RO:0002212 GO:0035736 ! negatively regulates cell proliferation involved in compound eye morphogenesis created_by: bf creation_date: 2011-03-18T02:19:22Z @@ -141115,8 +140546,8 @@ def: "Any process that activates or increases the frequency, rate or extent of c is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:2000495 ! regulation of cell proliferation involved in compound eye morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035736 ! cell proliferation involved in compound eye morphogenesis -relationship: positively_regulates GO:0035736 ! cell proliferation involved in compound eye morphogenesis +intersection_of: RO:0002213 GO:0035736 ! positively regulates cell proliferation involved in compound eye morphogenesis +relationship: RO:0002213 GO:0035736 ! positively regulates cell proliferation involved in compound eye morphogenesis created_by: bf creation_date: 2011-03-18T02:19:54Z @@ -141127,8 +140558,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of natural killer cell chemotaxis." [GOC:BHF] is_a: GO:1901623 ! regulation of lymphocyte chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035747 ! natural killer cell chemotaxis -relationship: regulates GO:0035747 ! natural killer cell chemotaxis +intersection_of: RO:0002211 GO:0035747 ! regulates (processual) natural killer cell chemotaxis +relationship: RO:0002211 GO:0035747 ! regulates (processual) natural killer cell chemotaxis created_by: bf creation_date: 2011-03-21T10:09:23Z @@ -141140,8 +140571,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:1901624 ! negative regulation of lymphocyte chemotaxis is_a: GO:2000501 ! regulation of natural killer cell chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035747 ! natural killer cell chemotaxis -relationship: negatively_regulates GO:0035747 ! natural killer cell chemotaxis +intersection_of: RO:0002212 GO:0035747 ! negatively regulates natural killer cell chemotaxis +relationship: RO:0002212 GO:0035747 ! negatively regulates natural killer cell chemotaxis created_by: bf creation_date: 2011-03-21T10:09:32Z @@ -141153,8 +140584,8 @@ def: "Any process that activates or increases the frequency, rate or extent of n is_a: GO:0140131 ! positive regulation of lymphocyte chemotaxis is_a: GO:2000501 ! regulation of natural killer cell chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035747 ! natural killer cell chemotaxis -relationship: positively_regulates GO:0035747 ! natural killer cell chemotaxis +intersection_of: RO:0002213 GO:0035747 ! positively regulates natural killer cell chemotaxis +relationship: RO:0002213 GO:0035747 ! positively regulates natural killer cell chemotaxis created_by: bf creation_date: 2011-03-21T10:09:38Z @@ -141166,8 +140597,8 @@ def: "Any process that modulates the frequency, rate or extent of dendritic cell is_a: GO:0002688 ! regulation of leukocyte chemotaxis is_a: GO:0071675 ! regulation of mononuclear cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002407 ! dendritic cell chemotaxis -relationship: regulates GO:0002407 ! dendritic cell chemotaxis +intersection_of: RO:0002211 GO:0002407 ! regulates (processual) dendritic cell chemotaxis +relationship: RO:0002211 GO:0002407 ! regulates (processual) dendritic cell chemotaxis created_by: ebc creation_date: 2011-03-22T10:21:38Z @@ -141180,8 +140611,8 @@ is_a: GO:0002689 ! negative regulation of leukocyte chemotaxis is_a: GO:0071676 ! negative regulation of mononuclear cell migration is_a: GO:2000508 ! regulation of dendritic cell chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002407 ! dendritic cell chemotaxis -relationship: negatively_regulates GO:0002407 ! dendritic cell chemotaxis +intersection_of: RO:0002212 GO:0002407 ! negatively regulates dendritic cell chemotaxis +relationship: RO:0002212 GO:0002407 ! negatively regulates dendritic cell chemotaxis created_by: ebc creation_date: 2011-03-22T10:21:45Z @@ -141194,8 +140625,8 @@ is_a: GO:0002690 ! positive regulation of leukocyte chemotaxis is_a: GO:0071677 ! positive regulation of mononuclear cell migration is_a: GO:2000508 ! regulation of dendritic cell chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002407 ! dendritic cell chemotaxis -relationship: positively_regulates GO:0002407 ! dendritic cell chemotaxis +intersection_of: RO:0002213 GO:0002407 ! positively regulates dendritic cell chemotaxis +relationship: RO:0002213 GO:0002407 ! positively regulates dendritic cell chemotaxis created_by: ebc creation_date: 2011-03-22T10:21:49Z @@ -141206,8 +140637,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of myeloid dendritic cell chemotaxis." [GOC:obol] is_a: GO:2000508 ! regulation of dendritic cell chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002408 ! myeloid dendritic cell chemotaxis -relationship: regulates GO:0002408 ! myeloid dendritic cell chemotaxis +intersection_of: RO:0002211 GO:0002408 ! regulates (processual) myeloid dendritic cell chemotaxis +relationship: RO:0002211 GO:0002408 ! regulates (processual) myeloid dendritic cell chemotaxis created_by: ebc creation_date: 2011-03-23T12:18:32Z @@ -141219,8 +140650,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:2000509 ! negative regulation of dendritic cell chemotaxis is_a: GO:2000527 ! regulation of myeloid dendritic cell chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002408 ! myeloid dendritic cell chemotaxis -relationship: negatively_regulates GO:0002408 ! myeloid dendritic cell chemotaxis +intersection_of: RO:0002212 GO:0002408 ! negatively regulates myeloid dendritic cell chemotaxis +relationship: RO:0002212 GO:0002408 ! negatively regulates myeloid dendritic cell chemotaxis created_by: ebc creation_date: 2011-03-23T12:18:39Z @@ -141232,8 +140663,8 @@ def: "Any process that activates or increases the frequency, rate or extent of m is_a: GO:2000510 ! positive regulation of dendritic cell chemotaxis is_a: GO:2000527 ! regulation of myeloid dendritic cell chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002408 ! myeloid dendritic cell chemotaxis -relationship: positively_regulates GO:0002408 ! myeloid dendritic cell chemotaxis +intersection_of: RO:0002213 GO:0002408 ! positively regulates myeloid dendritic cell chemotaxis +relationship: RO:0002213 GO:0002408 ! positively regulates myeloid dendritic cell chemotaxis created_by: ebc creation_date: 2011-03-23T12:18:45Z @@ -141244,8 +140675,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of B cell chemotaxis." [GOC:obol] is_a: GO:1901623 ! regulation of lymphocyte chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035754 ! B cell chemotaxis -relationship: regulates GO:0035754 ! B cell chemotaxis +intersection_of: RO:0002211 GO:0035754 ! regulates (processual) B cell chemotaxis +relationship: RO:0002211 GO:0035754 ! regulates (processual) B cell chemotaxis created_by: ebc creation_date: 2011-03-29T09:49:25Z @@ -141257,8 +140688,8 @@ def: "Any process that activates or increases the frequency, rate or extent of B is_a: GO:0140131 ! positive regulation of lymphocyte chemotaxis is_a: GO:2000537 ! regulation of B cell chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035754 ! B cell chemotaxis -relationship: positively_regulates GO:0035754 ! B cell chemotaxis +intersection_of: RO:0002213 GO:0035754 ! positively regulates B cell chemotaxis +relationship: RO:0002213 GO:0035754 ! positively regulates B cell chemotaxis created_by: ebc creation_date: 2011-03-29T09:49:33Z @@ -141270,8 +140701,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0010470 ! regulation of gastrulation is_a: GO:0045992 ! negative regulation of embryonic development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0007369 ! gastrulation -relationship: negatively_regulates GO:0007369 ! gastrulation +intersection_of: RO:0002212 GO:0007369 ! negatively regulates gastrulation +relationship: RO:0002212 GO:0007369 ! negatively regulates gastrulation created_by: yaf creation_date: 2011-04-01T04:10:08Z @@ -141283,8 +140714,8 @@ def: "Any process that activates or increases the frequency, rate or extent of g is_a: GO:0010470 ! regulation of gastrulation is_a: GO:0040019 ! positive regulation of embryonic development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0007369 ! gastrulation -relationship: positively_regulates GO:0007369 ! gastrulation +intersection_of: RO:0002213 GO:0007369 ! positively regulates gastrulation +relationship: RO:0002213 GO:0007369 ! positively regulates gastrulation created_by: yaf creation_date: 2011-04-01T04:10:15Z @@ -141296,8 +140727,8 @@ def: "Any process that modulates the frequency, rate or extent of dendritic cell synonym: "regulation of dendritic extension" RELATED [GOC:obol] is_a: GO:0120032 ! regulation of plasma membrane bounded cell projection assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0097026 ! dendritic cell dendrite assembly -relationship: regulates GO:0097026 ! dendritic cell dendrite assembly +intersection_of: RO:0002211 GO:0097026 ! regulates (processual) dendritic cell dendrite assembly +relationship: RO:0002211 GO:0097026 ! regulates (processual) dendritic cell dendrite assembly created_by: ebc creation_date: 2011-04-03T07:21:55Z @@ -141310,8 +140741,8 @@ synonym: "negative regulation of dendritic extension" RELATED [GOC:obol] is_a: GO:0120033 ! negative regulation of plasma membrane bounded cell projection assembly is_a: GO:2000547 ! regulation of dendritic cell dendrite assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0097026 ! dendritic cell dendrite assembly -relationship: negatively_regulates GO:0097026 ! dendritic cell dendrite assembly +intersection_of: RO:0002212 GO:0097026 ! negatively regulates dendritic cell dendrite assembly +relationship: RO:0002212 GO:0097026 ! negatively regulates dendritic cell dendrite assembly created_by: ebc creation_date: 2011-04-03T07:22:01Z @@ -141324,8 +140755,8 @@ synonym: "positive regulation of dendritic extension" RELATED [GOC:obol] is_a: GO:0120034 ! positive regulation of plasma membrane bounded cell projection assembly is_a: GO:2000547 ! regulation of dendritic cell dendrite assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0097026 ! dendritic cell dendrite assembly -relationship: positively_regulates GO:0097026 ! dendritic cell dendrite assembly +intersection_of: RO:0002213 GO:0097026 ! positively regulates dendritic cell dendrite assembly +relationship: RO:0002213 GO:0097026 ! positively regulates dendritic cell dendrite assembly created_by: ebc creation_date: 2011-04-03T07:22:06Z @@ -141337,8 +140768,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:1901624 ! negative regulation of lymphocyte chemotaxis is_a: GO:2000537 ! regulation of B cell chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035754 ! B cell chemotaxis -relationship: negatively_regulates GO:0035754 ! B cell chemotaxis +intersection_of: RO:0002212 GO:0035754 ! negatively regulates B cell chemotaxis +relationship: RO:0002212 GO:0035754 ! negatively regulates B cell chemotaxis created_by: ebc creation_date: 2011-04-03T07:25:59Z @@ -141355,8 +140786,8 @@ is_a: GO:0010557 ! positive regulation of macromolecule biosynthetic process is_a: GO:0051054 ! positive regulation of DNA metabolic process is_a: GO:2000278 ! regulation of DNA biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0071897 ! DNA biosynthetic process -relationship: positively_regulates GO:0071897 ! DNA biosynthetic process +intersection_of: RO:0002213 GO:0071897 ! positively regulates DNA biosynthetic process +relationship: RO:0002213 GO:0071897 ! positively regulates DNA biosynthetic process created_by: yaf creation_date: 2011-04-04T10:01:20Z @@ -141369,9 +140800,9 @@ synonym: "regulation of CN II biosynthesis" RELATED [GOC:obol] synonym: "regulation of CN II formation" RELATED [GOC:obol] is_a: GO:0022603 ! regulation of anatomical structure morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0021634 ! optic nerve formation -relationship: regulates GO:0009653 ! anatomical structure morphogenesis -relationship: regulates GO:0021634 ! optic nerve formation +intersection_of: RO:0002211 GO:0021634 ! regulates (processual) optic nerve formation +relationship: RO:0002211 GO:0009653 ! regulates (processual) anatomical structure morphogenesis +relationship: RO:0002211 GO:0021634 ! regulates (processual) optic nerve formation created_by: yaf creation_date: 2011-04-11T03:41:30Z @@ -141385,8 +140816,8 @@ synonym: "negative regulation of CN II formation" RELATED [GOC:obol] is_a: GO:0051093 ! negative regulation of developmental process is_a: GO:2000595 ! regulation of optic nerve formation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0021634 ! optic nerve formation -relationship: negatively_regulates GO:0021634 ! optic nerve formation +intersection_of: RO:0002212 GO:0021634 ! negatively regulates optic nerve formation +relationship: RO:0002212 GO:0021634 ! negatively regulates optic nerve formation created_by: yaf creation_date: 2011-04-11T03:41:35Z @@ -141400,8 +140831,8 @@ synonym: "positive regulation of CN II formation" RELATED [GOC:obol] is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:2000595 ! regulation of optic nerve formation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0021634 ! optic nerve formation -relationship: positively_regulates GO:0021634 ! optic nerve formation +intersection_of: RO:0002213 GO:0021634 ! positively regulates optic nerve formation +relationship: RO:0002213 GO:0021634 ! positively regulates optic nerve formation created_by: yaf creation_date: 2011-04-11T03:41:39Z @@ -141412,8 +140843,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cell proliferation involved in mesonephros development." [GOC:obol] is_a: GO:1901722 ! regulation of cell proliferation involved in kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0061209 ! cell proliferation involved in mesonephros development -relationship: regulates GO:0061209 ! cell proliferation involved in mesonephros development +intersection_of: RO:0002211 GO:0061209 ! regulates (processual) cell proliferation involved in mesonephros development +relationship: RO:0002211 GO:0061209 ! regulates (processual) cell proliferation involved in mesonephros development created_by: yaf creation_date: 2011-04-18T08:42:19Z @@ -141425,8 +140856,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:1901723 ! negative regulation of cell proliferation involved in kidney development is_a: GO:2000606 ! regulation of cell proliferation involved in mesonephros development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0061209 ! cell proliferation involved in mesonephros development -relationship: negatively_regulates GO:0061209 ! cell proliferation involved in mesonephros development +intersection_of: RO:0002212 GO:0061209 ! negatively regulates cell proliferation involved in mesonephros development +relationship: RO:0002212 GO:0061209 ! negatively regulates cell proliferation involved in mesonephros development created_by: yaf creation_date: 2011-04-18T08:42:23Z @@ -141438,8 +140869,8 @@ def: "Any process that activates or increases the frequency, rate or extent of c is_a: GO:1901724 ! positive regulation of cell proliferation involved in kidney development is_a: GO:2000606 ! regulation of cell proliferation involved in mesonephros development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0061209 ! cell proliferation involved in mesonephros development -relationship: positively_regulates GO:0061209 ! cell proliferation involved in mesonephros development +intersection_of: RO:0002213 GO:0061209 ! positively regulates cell proliferation involved in mesonephros development +relationship: RO:0002213 GO:0061209 ! positively regulates cell proliferation involved in mesonephros development created_by: yaf creation_date: 2011-04-18T08:42:25Z @@ -141448,11 +140879,10 @@ id: GO:2000609 name: regulation of thyroid hormone generation namespace: biological_process def: "Any process that modulates the frequency, rate or extent of thyroid hormone generation." [GOC:obol] -is_a: GO:0031323 ! regulation of cellular metabolic process is_a: GO:0032350 ! regulation of hormone metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006590 ! thyroid hormone generation -relationship: regulates GO:0006590 ! thyroid hormone generation +intersection_of: RO:0002211 GO:0006590 ! regulates (processual) thyroid hormone generation +relationship: RO:0002211 GO:0006590 ! regulates (processual) thyroid hormone generation created_by: yaf creation_date: 2011-04-18T10:12:14Z @@ -141461,12 +140891,11 @@ id: GO:2000610 name: negative regulation of thyroid hormone generation namespace: biological_process def: "Any process that stops, prevents or reduces the frequency, rate or extent of thyroid hormone generation." [GOC:obol] -is_a: GO:0031324 ! negative regulation of cellular metabolic process is_a: GO:0032351 ! negative regulation of hormone metabolic process is_a: GO:2000609 ! regulation of thyroid hormone generation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006590 ! thyroid hormone generation -relationship: negatively_regulates GO:0006590 ! thyroid hormone generation +intersection_of: RO:0002212 GO:0006590 ! negatively regulates thyroid hormone generation +relationship: RO:0002212 GO:0006590 ! negatively regulates thyroid hormone generation created_by: yaf creation_date: 2011-04-18T10:12:19Z @@ -141475,12 +140904,11 @@ id: GO:2000611 name: positive regulation of thyroid hormone generation namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of thyroid hormone generation." [GOC:obol] -is_a: GO:0031325 ! positive regulation of cellular metabolic process is_a: GO:0032352 ! positive regulation of hormone metabolic process is_a: GO:2000609 ! regulation of thyroid hormone generation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006590 ! thyroid hormone generation -relationship: positively_regulates GO:0006590 ! thyroid hormone generation +intersection_of: RO:0002213 GO:0006590 ! positively regulates thyroid hormone generation +relationship: RO:0002213 GO:0006590 ! positively regulates thyroid hormone generation created_by: yaf creation_date: 2011-04-18T10:12:22Z @@ -141492,8 +140920,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:0072091 ! regulation of stem cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0072089 ! stem cell proliferation -relationship: negatively_regulates GO:0072089 ! stem cell proliferation +intersection_of: RO:0002212 GO:0072089 ! negatively regulates stem cell proliferation +relationship: RO:0002212 GO:0072089 ! negatively regulates stem cell proliferation created_by: dph creation_date: 2011-04-27T01:04:22Z @@ -141505,8 +140933,8 @@ def: "Any process that activates or increases the frequency, rate or extent of s is_a: GO:0008284 ! positive regulation of cell population proliferation is_a: GO:0072091 ! regulation of stem cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0072089 ! stem cell proliferation -relationship: positively_regulates GO:0072089 ! stem cell proliferation +intersection_of: RO:0002213 GO:0072089 ! positively regulates stem cell proliferation +relationship: RO:0002213 GO:0072089 ! positively regulates stem cell proliferation created_by: dph creation_date: 2011-04-27T01:04:25Z @@ -141515,14 +140943,14 @@ id: GO:2000649 name: regulation of sodium ion transmembrane transporter activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of sodium ion transmembrane transporter activity." [GOC:obol] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "regulation of sodium transporter activity" EXACT [GOC:obol] is_a: GO:0032412 ! regulation of monoatomic ion transmembrane transporter activity is_a: GO:1902305 ! regulation of sodium ion transmembrane transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0015081 ! sodium ion transmembrane transporter activity -relationship: regulates GO:0015081 ! sodium ion transmembrane transporter activity -relationship: regulates GO:0035725 ! sodium ion transmembrane transport +intersection_of: RO:0002211 GO:0015081 ! regulates (processual) sodium ion transmembrane transporter activity +relationship: RO:0002211 GO:0015081 ! regulates (processual) sodium ion transmembrane transporter activity +relationship: RO:0002211 GO:0035725 ! regulates (processual) sodium ion transmembrane transport created_by: yaf creation_date: 2011-04-28T08:42:53Z @@ -141531,15 +140959,15 @@ id: GO:2000650 name: negative regulation of sodium ion transmembrane transporter activity namespace: biological_process def: "Any process that stops, prevents or reduces the frequency, rate or extent of sodium ion transmembrane transporter activity." [GOC:obol] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "negative regulation of sodium transporter activity" EXACT [GOC:obol] is_a: GO:0032413 ! negative regulation of ion transmembrane transporter activity is_a: GO:1902306 ! negative regulation of sodium ion transmembrane transport is_a: GO:2000649 ! regulation of sodium ion transmembrane transporter activity intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0015081 ! sodium ion transmembrane transporter activity -relationship: negatively_regulates GO:0015081 ! sodium ion transmembrane transporter activity -relationship: negatively_regulates GO:0035725 ! sodium ion transmembrane transport +intersection_of: RO:0002212 GO:0015081 ! negatively regulates sodium ion transmembrane transporter activity +relationship: RO:0002212 GO:0015081 ! negatively regulates sodium ion transmembrane transporter activity +relationship: RO:0002212 GO:0035725 ! negatively regulates sodium ion transmembrane transport created_by: yaf creation_date: 2011-04-28T08:42:57Z @@ -141548,15 +140976,15 @@ id: GO:2000651 name: positive regulation of sodium ion transmembrane transporter activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of sodium ion transmembrane transporter activity." [GOC:obol] -subset: gocheck_do_not_annotate +subset: gocheck_obsoletion_candidate synonym: "positive regulation of sodium transporter activity" EXACT [GOC:obol] is_a: GO:0032414 ! positive regulation of ion transmembrane transporter activity is_a: GO:1902307 ! positive regulation of sodium ion transmembrane transport is_a: GO:2000649 ! regulation of sodium ion transmembrane transporter activity intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0015081 ! sodium ion transmembrane transporter activity -relationship: positively_regulates GO:0015081 ! sodium ion transmembrane transporter activity -relationship: positively_regulates GO:0035725 ! sodium ion transmembrane transport +intersection_of: RO:0002213 GO:0015081 ! positively regulates sodium ion transmembrane transporter activity +relationship: RO:0002213 GO:0015081 ! positively regulates sodium ion transmembrane transporter activity +relationship: RO:0002213 GO:0035725 ! positively regulates sodium ion transmembrane transport created_by: yaf creation_date: 2011-04-28T08:43:00Z @@ -141568,8 +140996,8 @@ def: "Any process that modulates the frequency, rate or extent of cellular respo is_a: GO:0048583 ! regulation of response to stimulus is_a: GO:0050794 ! regulation of cellular process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0071394 ! cellular response to testosterone stimulus -relationship: regulates GO:0071394 ! cellular response to testosterone stimulus +intersection_of: RO:0002211 GO:0071394 ! regulates (processual) cellular response to testosterone stimulus +relationship: RO:0002211 GO:0071394 ! regulates (processual) cellular response to testosterone stimulus created_by: vk creation_date: 2011-05-02T03:23:56Z @@ -141582,8 +141010,8 @@ is_a: GO:0048523 ! negative regulation of cellular process is_a: GO:0048585 ! negative regulation of response to stimulus is_a: GO:2000654 ! regulation of cellular response to testosterone stimulus intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0071394 ! cellular response to testosterone stimulus -relationship: negatively_regulates GO:0071394 ! cellular response to testosterone stimulus +intersection_of: RO:0002212 GO:0071394 ! negatively regulates cellular response to testosterone stimulus +relationship: RO:0002212 GO:0071394 ! negatively regulates cellular response to testosterone stimulus created_by: vk creation_date: 2011-05-02T03:23:59Z @@ -141595,8 +141023,8 @@ def: "Any process that modulates the frequency, rate or extent of apolipoprotein subset: gocheck_do_not_annotate is_a: GO:0043393 ! regulation of protein binding intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0034185 ! apolipoprotein binding -relationship: regulates GO:0034185 ! apolipoprotein binding +intersection_of: RO:0002211 GO:0034185 ! regulates (processual) apolipoprotein binding +relationship: RO:0002211 GO:0034185 ! regulates (processual) apolipoprotein binding created_by: vk creation_date: 2011-05-02T05:33:41Z @@ -141609,8 +141037,8 @@ subset: gocheck_do_not_annotate is_a: GO:0032091 ! negative regulation of protein binding is_a: GO:2000656 ! regulation of apolipoprotein binding intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0034185 ! apolipoprotein binding -relationship: negatively_regulates GO:0034185 ! apolipoprotein binding +intersection_of: RO:0002212 GO:0034185 ! negatively regulates apolipoprotein binding +relationship: RO:0002212 GO:0034185 ! negatively regulates apolipoprotein binding created_by: vk creation_date: 2011-05-02T05:33:44Z @@ -141623,8 +141051,8 @@ subset: gocheck_do_not_annotate is_a: GO:0032092 ! positive regulation of protein binding is_a: GO:2000656 ! regulation of apolipoprotein binding intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0034185 ! apolipoprotein binding -relationship: positively_regulates GO:0034185 ! apolipoprotein binding +intersection_of: RO:0002213 GO:0034185 ! positively regulates apolipoprotein binding +relationship: RO:0002213 GO:0034185 ! positively regulates apolipoprotein binding created_by: vk creation_date: 2011-05-02T05:33:46Z @@ -141636,8 +141064,8 @@ def: "Any process that modulates the frequency, rate or extent of dendritic cell synonym: "regulation of dendritic cell apoptosis" NARROW [] is_a: GO:2000106 ! regulation of leukocyte apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0097048 ! dendritic cell apoptotic process -relationship: regulates GO:0097048 ! dendritic cell apoptotic process +intersection_of: RO:0002211 GO:0097048 ! regulates (processual) dendritic cell apoptotic process +relationship: RO:0002211 GO:0097048 ! regulates (processual) dendritic cell apoptotic process created_by: pr creation_date: 2011-05-09T07:34:16Z @@ -141650,8 +141078,8 @@ synonym: "negative regulation of dendritic cell apoptosis" NARROW [] is_a: GO:2000107 ! negative regulation of leukocyte apoptotic process is_a: GO:2000668 ! regulation of dendritic cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0097048 ! dendritic cell apoptotic process -relationship: negatively_regulates GO:0097048 ! dendritic cell apoptotic process +intersection_of: RO:0002212 GO:0097048 ! negatively regulates dendritic cell apoptotic process +relationship: RO:0002212 GO:0097048 ! negatively regulates dendritic cell apoptotic process created_by: pr creation_date: 2011-05-09T07:34:21Z @@ -141664,8 +141092,8 @@ synonym: "positive regulation of dendritic cell apoptosis" NARROW [] is_a: GO:2000108 ! positive regulation of leukocyte apoptotic process is_a: GO:2000668 ! regulation of dendritic cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0097048 ! dendritic cell apoptotic process -relationship: positively_regulates GO:0097048 ! dendritic cell apoptotic process +intersection_of: RO:0002213 GO:0097048 ! positively regulates dendritic cell apoptotic process +relationship: RO:0002213 GO:0097048 ! positively regulates dendritic cell apoptotic process created_by: pr creation_date: 2011-05-09T07:34:26Z @@ -141678,8 +141106,8 @@ synonym: "regulation of motoneuron apoptosis" EXACT [GOC:obol] synonym: "regulation of motor neuron apoptosis" NARROW [] is_a: GO:0043523 ! regulation of neuron apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0097049 ! motor neuron apoptotic process -relationship: regulates GO:0097049 ! motor neuron apoptotic process +intersection_of: RO:0002211 GO:0097049 ! regulates (processual) motor neuron apoptotic process +relationship: RO:0002211 GO:0097049 ! regulates (processual) motor neuron apoptotic process created_by: pr creation_date: 2011-05-09T10:56:17Z @@ -141693,8 +141121,8 @@ synonym: "negative regulation of motor neuron apoptosis" NARROW [] is_a: GO:0043524 ! negative regulation of neuron apoptotic process is_a: GO:2000671 ! regulation of motor neuron apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0097049 ! motor neuron apoptotic process -relationship: negatively_regulates GO:0097049 ! motor neuron apoptotic process +intersection_of: RO:0002212 GO:0097049 ! negatively regulates motor neuron apoptotic process +relationship: RO:0002212 GO:0097049 ! negatively regulates motor neuron apoptotic process created_by: pr creation_date: 2011-05-09T10:56:21Z @@ -141708,8 +141136,8 @@ synonym: "positive regulation of motor neuron apoptosis" NARROW [] is_a: GO:0043525 ! positive regulation of neuron apoptotic process is_a: GO:2000671 ! regulation of motor neuron apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0097049 ! motor neuron apoptotic process -relationship: positively_regulates GO:0097049 ! motor neuron apoptotic process +intersection_of: RO:0002213 GO:0097049 ! positively regulates motor neuron apoptotic process +relationship: RO:0002213 GO:0097049 ! positively regulates motor neuron apoptotic process created_by: pr creation_date: 2011-05-09T10:56:24Z @@ -141723,8 +141151,8 @@ synonym: "regulation of pancreatic beta cell apoptosis" EXACT [GOC:obol] synonym: "regulation of type B pancreatic cell apoptosis" NARROW [] is_a: GO:1904035 ! regulation of epithelial cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0097050 ! type B pancreatic cell apoptotic process -relationship: regulates GO:0097050 ! type B pancreatic cell apoptotic process +intersection_of: RO:0002211 GO:0097050 ! regulates (processual) type B pancreatic cell apoptotic process +relationship: RO:0002211 GO:0097050 ! regulates (processual) type B pancreatic cell apoptotic process created_by: pr creation_date: 2011-05-09T11:51:09Z @@ -141739,8 +141167,8 @@ synonym: "negative regulation of type B pancreatic cell apoptosis" NARROW [] is_a: GO:1904036 ! negative regulation of epithelial cell apoptotic process is_a: GO:2000674 ! regulation of type B pancreatic cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0097050 ! type B pancreatic cell apoptotic process -relationship: negatively_regulates GO:0097050 ! type B pancreatic cell apoptotic process +intersection_of: RO:0002212 GO:0097050 ! negatively regulates type B pancreatic cell apoptotic process +relationship: RO:0002212 GO:0097050 ! negatively regulates type B pancreatic cell apoptotic process created_by: pr creation_date: 2011-05-09T11:51:12Z @@ -141755,52 +141183,11 @@ synonym: "positive regulation of type B pancreatic cell apoptosis" NARROW [] is_a: GO:1904037 ! positive regulation of epithelial cell apoptotic process is_a: GO:2000674 ! regulation of type B pancreatic cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0097050 ! type B pancreatic cell apoptotic process -relationship: positively_regulates GO:0097050 ! type B pancreatic cell apoptotic process +intersection_of: RO:0002213 GO:0097050 ! positively regulates type B pancreatic cell apoptotic process +relationship: RO:0002213 GO:0097050 ! positively regulates type B pancreatic cell apoptotic process created_by: pr creation_date: 2011-05-09T11:51:15Z -[Term] -id: GO:2000677 -name: regulation of transcription regulatory region DNA binding -namespace: biological_process -def: "Any process that modulates the frequency, rate or extent of transcription regulatory region DNA binding." [GOC:obol] -subset: gocheck_do_not_annotate -is_a: GO:0051101 ! regulation of DNA binding -intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0000976 ! transcription cis-regulatory region binding -relationship: regulates GO:0000976 ! transcription cis-regulatory region binding -created_by: yaf -creation_date: 2011-05-09T03:28:11Z - -[Term] -id: GO:2000678 -name: negative regulation of transcription regulatory region DNA binding -namespace: biological_process -def: "Any process that stops, prevents or reduces the frequency, rate or extent of transcription regulatory region DNA binding." [GOC:obol] -subset: gocheck_do_not_annotate -is_a: GO:0043392 ! negative regulation of DNA binding -is_a: GO:2000677 ! regulation of transcription regulatory region DNA binding -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0000976 ! transcription cis-regulatory region binding -relationship: negatively_regulates GO:0000976 ! transcription cis-regulatory region binding -created_by: yaf -creation_date: 2011-05-09T03:28:14Z - -[Term] -id: GO:2000679 -name: positive regulation of transcription regulatory region DNA binding -namespace: biological_process -def: "Any process that activates or increases the frequency, rate or extent of transcription regulatory region DNA binding." [GOC:obol] -subset: gocheck_do_not_annotate -is_a: GO:0043388 ! positive regulation of DNA binding -is_a: GO:2000677 ! regulation of transcription regulatory region DNA binding -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0000976 ! transcription cis-regulatory region binding -relationship: positively_regulates GO:0000976 ! transcription cis-regulatory region binding -created_by: yaf -creation_date: 2011-05-09T03:28:17Z - [Term] id: GO:2000690 name: regulation of cardiac muscle cell myoblast differentiation @@ -141811,8 +141198,8 @@ synonym: "regulation of myocardial precursor cell differentiation" EXACT [GOC:ob is_a: GO:0045661 ! regulation of myoblast differentiation is_a: GO:0051890 ! regulation of cardioblast differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060379 ! cardiac muscle cell myoblast differentiation -relationship: regulates GO:0060379 ! cardiac muscle cell myoblast differentiation +intersection_of: RO:0002211 GO:0060379 ! regulates (processual) cardiac muscle cell myoblast differentiation +relationship: RO:0002211 GO:0060379 ! regulates (processual) cardiac muscle cell myoblast differentiation created_by: yaf creation_date: 2011-05-25T09:08:01Z @@ -141827,8 +141214,8 @@ is_a: GO:0045662 ! negative regulation of myoblast differentiation is_a: GO:0051892 ! negative regulation of cardioblast differentiation is_a: GO:2000690 ! regulation of cardiac muscle cell myoblast differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060379 ! cardiac muscle cell myoblast differentiation -relationship: negatively_regulates GO:0060379 ! cardiac muscle cell myoblast differentiation +intersection_of: RO:0002212 GO:0060379 ! negatively regulates cardiac muscle cell myoblast differentiation +relationship: RO:0002212 GO:0060379 ! negatively regulates cardiac muscle cell myoblast differentiation created_by: yaf creation_date: 2011-05-25T09:08:06Z @@ -141839,8 +141226,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of epithelial cell differentiation involved in kidney development." [GOC:mtg_kidney_jan10, GOC:yaf] is_a: GO:0030856 ! regulation of epithelial cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035850 ! epithelial cell differentiation involved in kidney development -relationship: regulates GO:0035850 ! epithelial cell differentiation involved in kidney development +intersection_of: RO:0002211 GO:0035850 ! regulates (processual) epithelial cell differentiation involved in kidney development +relationship: RO:0002211 GO:0035850 ! regulates (processual) epithelial cell differentiation involved in kidney development created_by: bf creation_date: 2011-05-16T04:23:52Z @@ -141852,8 +141239,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0030857 ! negative regulation of epithelial cell differentiation is_a: GO:2000696 ! regulation of epithelial cell differentiation involved in kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035850 ! epithelial cell differentiation involved in kidney development -relationship: negatively_regulates GO:0035850 ! epithelial cell differentiation involved in kidney development +intersection_of: RO:0002212 GO:0035850 ! negatively regulates epithelial cell differentiation involved in kidney development +relationship: RO:0002212 GO:0035850 ! negatively regulates epithelial cell differentiation involved in kidney development created_by: bf creation_date: 2011-05-16T04:23:55Z @@ -141865,8 +141252,8 @@ def: "Any process that activates or increases the frequency, rate or extent of e is_a: GO:0030858 ! positive regulation of epithelial cell differentiation is_a: GO:2000696 ! regulation of epithelial cell differentiation involved in kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035850 ! epithelial cell differentiation involved in kidney development -relationship: positively_regulates GO:0035850 ! epithelial cell differentiation involved in kidney development +intersection_of: RO:0002213 GO:0035850 ! positively regulates epithelial cell differentiation involved in kidney development +relationship: RO:0002213 GO:0035850 ! positively regulates epithelial cell differentiation involved in kidney development created_by: bf creation_date: 2011-05-16T04:23:57Z @@ -141881,8 +141268,8 @@ is_a: GO:0045663 ! positive regulation of myoblast differentiation is_a: GO:0051891 ! positive regulation of cardioblast differentiation is_a: GO:2000690 ! regulation of cardiac muscle cell myoblast differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060379 ! cardiac muscle cell myoblast differentiation -relationship: positively_regulates GO:0060379 ! cardiac muscle cell myoblast differentiation +intersection_of: RO:0002213 GO:0060379 ! positively regulates cardiac muscle cell myoblast differentiation +relationship: RO:0002213 GO:0060379 ! positively regulates cardiac muscle cell myoblast differentiation created_by: yaf creation_date: 2011-05-25T09:08:09Z @@ -141896,8 +141283,8 @@ synonym: "regulation of heart muscle cell differentiation" RELATED [GOC:obol] is_a: GO:0051153 ! regulation of striated muscle cell differentiation is_a: GO:1905207 ! regulation of cardiocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0055007 ! cardiac muscle cell differentiation -relationship: regulates GO:0055007 ! cardiac muscle cell differentiation +intersection_of: RO:0002211 GO:0055007 ! regulates (processual) cardiac muscle cell differentiation +relationship: RO:0002211 GO:0055007 ! regulates (processual) cardiac muscle cell differentiation created_by: vk creation_date: 2011-06-08T10:51:06Z @@ -141912,8 +141299,8 @@ is_a: GO:0051154 ! negative regulation of striated muscle cell differentiation is_a: GO:1905208 ! negative regulation of cardiocyte differentiation is_a: GO:2000725 ! regulation of cardiac muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0055007 ! cardiac muscle cell differentiation -relationship: negatively_regulates GO:0055007 ! cardiac muscle cell differentiation +intersection_of: RO:0002212 GO:0055007 ! negatively regulates cardiac muscle cell differentiation +relationship: RO:0002212 GO:0055007 ! negatively regulates cardiac muscle cell differentiation created_by: vk creation_date: 2011-06-08T10:51:11Z @@ -141928,8 +141315,8 @@ is_a: GO:0051155 ! positive regulation of striated muscle cell differentiation is_a: GO:1905209 ! positive regulation of cardiocyte differentiation is_a: GO:2000725 ! regulation of cardiac muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0055007 ! cardiac muscle cell differentiation -relationship: positively_regulates GO:0055007 ! cardiac muscle cell differentiation +intersection_of: RO:0002213 GO:0055007 ! positively regulates cardiac muscle cell differentiation +relationship: RO:0002213 GO:0055007 ! positively regulates cardiac muscle cell differentiation created_by: vk creation_date: 2011-06-08T10:51:15Z @@ -141944,9 +141331,9 @@ is_a: GO:0002053 ! positive regulation of mesenchymal cell proliferation is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0072199 ! regulation of mesenchymal cell proliferation involved in ureter development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0072198 ! mesenchymal cell proliferation involved in ureter development -relationship: positively_regulates GO:0032502 ! developmental process -relationship: positively_regulates GO:0072198 ! mesenchymal cell proliferation involved in ureter development +intersection_of: RO:0002213 GO:0072198 ! positively regulates mesenchymal cell proliferation involved in ureter development +relationship: RO:0002213 GO:0032502 ! positively regulates developmental process +relationship: RO:0002213 GO:0072198 ! positively regulates mesenchymal cell proliferation involved in ureter development created_by: yaf creation_date: 2011-06-10T02:27:19Z @@ -141957,8 +141344,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of stem cell differentiation." [GOC:obol] is_a: GO:0045595 ! regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0048863 ! stem cell differentiation -relationship: regulates GO:0048863 ! stem cell differentiation +intersection_of: RO:0002211 GO:0048863 ! regulates (processual) stem cell differentiation +relationship: RO:0002211 GO:0048863 ! regulates (processual) stem cell differentiation created_by: yaf creation_date: 2011-06-14T02:05:16Z @@ -141970,8 +141357,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:2000736 ! regulation of stem cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0048863 ! stem cell differentiation -relationship: negatively_regulates GO:0048863 ! stem cell differentiation +intersection_of: RO:0002212 GO:0048863 ! negatively regulates stem cell differentiation +relationship: RO:0002212 GO:0048863 ! negatively regulates stem cell differentiation created_by: yaf creation_date: 2011-06-14T02:05:20Z @@ -141983,8 +141370,8 @@ def: "Any process that activates or increases the frequency, rate or extent of s is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:2000736 ! regulation of stem cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0048863 ! stem cell differentiation -relationship: positively_regulates GO:0048863 ! stem cell differentiation +intersection_of: RO:0002213 GO:0048863 ! positively regulates stem cell differentiation +relationship: RO:0002213 GO:0048863 ! positively regulates stem cell differentiation created_by: yaf creation_date: 2011-06-14T02:05:23Z @@ -141995,8 +141382,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cytoplasmic translation." [GOC:obol] is_a: GO:0006417 ! regulation of translation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002181 ! cytoplasmic translation -relationship: regulates GO:0002181 ! cytoplasmic translation +intersection_of: RO:0002211 GO:0002181 ! regulates (processual) cytoplasmic translation +relationship: RO:0002211 GO:0002181 ! regulates (processual) cytoplasmic translation created_by: vw creation_date: 2011-06-20T10:39:19Z @@ -142008,8 +141395,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0017148 ! negative regulation of translation is_a: GO:2000765 ! regulation of cytoplasmic translation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002181 ! cytoplasmic translation -relationship: negatively_regulates GO:0002181 ! cytoplasmic translation +intersection_of: RO:0002212 GO:0002181 ! negatively regulates cytoplasmic translation +relationship: RO:0002212 GO:0002181 ! negatively regulates cytoplasmic translation created_by: vw creation_date: 2011-06-20T10:39:23Z @@ -142021,8 +141408,8 @@ def: "Any process that activates or increases the frequency, rate or extent of c is_a: GO:0045727 ! positive regulation of translation is_a: GO:2000765 ! regulation of cytoplasmic translation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002181 ! cytoplasmic translation -relationship: positively_regulates GO:0002181 ! cytoplasmic translation +intersection_of: RO:0002213 GO:0002181 ! positively regulates cytoplasmic translation +relationship: RO:0002213 GO:0002181 ! positively regulates cytoplasmic translation created_by: vw creation_date: 2011-06-20T10:39:26Z @@ -142034,8 +141421,8 @@ def: "Any process that activates or increases the frequency, rate or extent of n is_a: GO:0072182 ! regulation of nephron tubule epithelial cell differentiation is_a: GO:2000698 ! positive regulation of epithelial cell differentiation involved in kidney development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0072160 ! nephron tubule epithelial cell differentiation -relationship: positively_regulates GO:0072160 ! nephron tubule epithelial cell differentiation +intersection_of: RO:0002213 GO:0072160 ! positively regulates nephron tubule epithelial cell differentiation +relationship: RO:0002213 GO:0072160 ! positively regulates nephron tubule epithelial cell differentiation created_by: yaf creation_date: 2011-06-22T11:55:06Z @@ -142046,8 +141433,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of mesenchymal cell proliferation involved in lung development." [PMID:21513708] is_a: GO:0010464 ! regulation of mesenchymal cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060916 ! mesenchymal cell proliferation involved in lung development -relationship: regulates GO:0060916 ! mesenchymal cell proliferation involved in lung development +intersection_of: RO:0002211 GO:0060916 ! regulates (processual) mesenchymal cell proliferation involved in lung development +relationship: RO:0002211 GO:0060916 ! regulates (processual) mesenchymal cell proliferation involved in lung development created_by: pr creation_date: 2011-06-24T01:53:50Z @@ -142061,10 +141448,10 @@ is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:0072201 ! negative regulation of mesenchymal cell proliferation is_a: GO:2000790 ! regulation of mesenchymal cell proliferation involved in lung development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060916 ! mesenchymal cell proliferation involved in lung development -relationship: negatively_regulates GO:0032501 ! multicellular organismal process -relationship: negatively_regulates GO:0032502 ! developmental process -relationship: negatively_regulates GO:0060916 ! mesenchymal cell proliferation involved in lung development +intersection_of: RO:0002212 GO:0060916 ! negatively regulates mesenchymal cell proliferation involved in lung development +relationship: RO:0002212 GO:0032501 ! negatively regulates multicellular organismal process +relationship: RO:0002212 GO:0032502 ! negatively regulates developmental process +relationship: RO:0002212 GO:0060916 ! negatively regulates mesenchymal cell proliferation involved in lung development created_by: pr creation_date: 2011-06-24T01:53:53Z @@ -142078,10 +141465,10 @@ is_a: GO:0051094 ! positive regulation of developmental process is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:2000790 ! regulation of mesenchymal cell proliferation involved in lung development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060916 ! mesenchymal cell proliferation involved in lung development -relationship: positively_regulates GO:0032501 ! multicellular organismal process -relationship: positively_regulates GO:0032502 ! developmental process -relationship: positively_regulates GO:0060916 ! mesenchymal cell proliferation involved in lung development +intersection_of: RO:0002213 GO:0060916 ! positively regulates mesenchymal cell proliferation involved in lung development +relationship: RO:0002213 GO:0032501 ! positively regulates multicellular organismal process +relationship: RO:0002213 GO:0032502 ! positively regulates developmental process +relationship: RO:0002213 GO:0060916 ! positively regulates mesenchymal cell proliferation involved in lung development created_by: pr creation_date: 2011-06-24T01:53:56Z @@ -142106,8 +141493,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of epithelial cell proliferation involved in lung morphogenesis." [PMID:21513708] is_a: GO:0050678 ! regulation of epithelial cell proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060502 ! epithelial cell proliferation involved in lung morphogenesis -relationship: regulates GO:0060502 ! epithelial cell proliferation involved in lung morphogenesis +intersection_of: RO:0002211 GO:0060502 ! regulates (processual) epithelial cell proliferation involved in lung morphogenesis +relationship: RO:0002211 GO:0060502 ! regulates (processual) epithelial cell proliferation involved in lung morphogenesis created_by: pr creation_date: 2011-06-25T07:22:38Z @@ -142119,8 +141506,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0050680 ! negative regulation of epithelial cell proliferation is_a: GO:2000794 ! regulation of epithelial cell proliferation involved in lung morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060502 ! epithelial cell proliferation involved in lung morphogenesis -relationship: negatively_regulates GO:0060502 ! epithelial cell proliferation involved in lung morphogenesis +intersection_of: RO:0002212 GO:0060502 ! negatively regulates epithelial cell proliferation involved in lung morphogenesis +relationship: RO:0002212 GO:0060502 ! negatively regulates epithelial cell proliferation involved in lung morphogenesis created_by: pr creation_date: 2011-06-25T07:22:42Z @@ -142132,8 +141519,8 @@ def: "Any process that modulates the frequency, rate or extent of tight junction synonym: "regulation of tight junction formation" EXACT [GOC:obol] is_a: GO:1901888 ! regulation of cell junction assembly intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0070830 ! bicellular tight junction assembly -relationship: regulates GO:0070830 ! bicellular tight junction assembly +intersection_of: RO:0002211 GO:0070830 ! regulates (processual) bicellular tight junction assembly +relationship: RO:0002211 GO:0070830 ! regulates (processual) bicellular tight junction assembly created_by: vk creation_date: 2011-07-06T01:08:28Z @@ -142145,8 +141532,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0008285 ! negative regulation of cell population proliferation is_a: GO:2000291 ! regulation of myoblast proliferation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051450 ! myoblast proliferation -relationship: negatively_regulates GO:0051450 ! myoblast proliferation +intersection_of: RO:0002212 GO:0051450 ! negatively regulates myoblast proliferation +relationship: RO:0002212 GO:0051450 ! negatively regulates myoblast proliferation created_by: pr creation_date: 2011-07-12T03:06:04Z @@ -142158,27 +141545,11 @@ def: "Any process that modulates the frequency, rate or extent of grooming behav synonym: "regulation of grooming behaviour" EXACT [GOC:obol] is_a: GO:0050795 ! regulation of behavior intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0007625 ! grooming behavior -relationship: regulates GO:0007625 ! grooming behavior +intersection_of: RO:0002211 GO:0007625 ! regulates (processual) grooming behavior +relationship: RO:0002211 GO:0007625 ! regulates (processual) grooming behavior created_by: rl creation_date: 2011-07-14T04:48:12Z -[Term] -id: GO:2000825 -name: positive regulation of androgen receptor activity -namespace: biological_process -def: "Any process that activates or increases the frequency, rate or extent of androgen receptor activity." [GOC:obol] -subset: gocheck_do_not_annotate -is_a: GO:0006357 ! regulation of transcription by RNA polymerase II -is_a: GO:0051091 ! positive regulation of DNA-binding transcription factor activity -is_a: GO:2000273 ! positive regulation of signaling receptor activity -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0004879 ! nuclear receptor activity -relationship: positively_regulates GO:0004879 ! nuclear receptor activity -relationship: regulates GO:0006366 ! transcription by RNA polymerase II -created_by: yaf -creation_date: 2011-07-15T10:56:14Z - [Term] id: GO:2000826 name: regulation of heart morphogenesis @@ -142187,8 +141558,8 @@ def: "Any process that modulates the frequency, rate or extent of heart morphoge synonym: "regulation of cardiac morphogenesis" RELATED [GOC:obol] is_a: GO:2000027 ! regulation of animal organ morphogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003007 ! heart morphogenesis -relationship: regulates GO:0003007 ! heart morphogenesis +intersection_of: RO:0002211 GO:0003007 ! regulates (processual) heart morphogenesis +relationship: RO:0002211 GO:0003007 ! regulates (processual) heart morphogenesis created_by: vk creation_date: 2011-07-19T10:08:58Z @@ -142203,8 +141574,8 @@ synonym: "regulation of PTH secretion" EXACT [GOC:obol] is_a: GO:0044060 ! regulation of endocrine process is_a: GO:0046883 ! regulation of hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035898 ! parathyroid hormone secretion -relationship: regulates GO:0035898 ! parathyroid hormone secretion +intersection_of: RO:0002211 GO:0035898 ! regulates (processual) parathyroid hormone secretion +relationship: RO:0002211 GO:0035898 ! regulates (processual) parathyroid hormone secretion created_by: bf creation_date: 2011-07-26T08:37:53Z @@ -142220,8 +141591,8 @@ is_a: GO:0046888 ! negative regulation of hormone secretion is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:2000828 ! regulation of parathyroid hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035898 ! parathyroid hormone secretion -relationship: negatively_regulates GO:0035898 ! parathyroid hormone secretion +intersection_of: RO:0002212 GO:0035898 ! negatively regulates parathyroid hormone secretion +relationship: RO:0002212 GO:0035898 ! negatively regulates parathyroid hormone secretion created_by: bf creation_date: 2011-07-26T08:37:57Z @@ -142237,8 +141608,8 @@ is_a: GO:0046887 ! positive regulation of hormone secretion is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:2000828 ! regulation of parathyroid hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035898 ! parathyroid hormone secretion -relationship: positively_regulates GO:0035898 ! parathyroid hormone secretion +intersection_of: RO:0002213 GO:0035898 ! positively regulates parathyroid hormone secretion +relationship: RO:0002213 GO:0035898 ! positively regulates parathyroid hormone secretion created_by: bf creation_date: 2011-07-26T08:38:00Z @@ -142251,8 +141622,8 @@ is_a: GO:0032368 ! regulation of lipid transport is_a: GO:0044060 ! regulation of endocrine process is_a: GO:0046883 ! regulation of hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035929 ! steroid hormone secretion -relationship: regulates GO:0035929 ! steroid hormone secretion +intersection_of: RO:0002211 GO:0035929 ! regulates (processual) steroid hormone secretion +relationship: RO:0002211 GO:0035929 ! regulates (processual) steroid hormone secretion created_by: bf creation_date: 2011-07-26T08:38:46Z @@ -142266,8 +141637,8 @@ is_a: GO:0046888 ! negative regulation of hormone secretion is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:2000831 ! regulation of steroid hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035929 ! steroid hormone secretion -relationship: negatively_regulates GO:0035929 ! steroid hormone secretion +intersection_of: RO:0002212 GO:0035929 ! negatively regulates steroid hormone secretion +relationship: RO:0002212 GO:0035929 ! negatively regulates steroid hormone secretion created_by: bf creation_date: 2011-07-26T08:38:50Z @@ -142281,8 +141652,8 @@ is_a: GO:0046887 ! positive regulation of hormone secretion is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:2000831 ! regulation of steroid hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035929 ! steroid hormone secretion -relationship: positively_regulates GO:0035929 ! steroid hormone secretion +intersection_of: RO:0002213 GO:0035929 ! positively regulates steroid hormone secretion +relationship: RO:0002213 GO:0035929 ! positively regulates steroid hormone secretion created_by: bf creation_date: 2011-07-26T08:38:51Z @@ -142293,8 +141664,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of androgen secretion." [GOC:sl] is_a: GO:2000831 ! regulation of steroid hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035935 ! androgen secretion -relationship: regulates GO:0035935 ! androgen secretion +intersection_of: RO:0002211 GO:0035935 ! regulates (processual) androgen secretion +relationship: RO:0002211 GO:0035935 ! regulates (processual) androgen secretion created_by: bf creation_date: 2011-07-26T08:39:45Z @@ -142306,8 +141677,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:2000832 ! negative regulation of steroid hormone secretion is_a: GO:2000834 ! regulation of androgen secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035935 ! androgen secretion -relationship: negatively_regulates GO:0035935 ! androgen secretion +intersection_of: RO:0002212 GO:0035935 ! negatively regulates androgen secretion +relationship: RO:0002212 GO:0035935 ! negatively regulates androgen secretion created_by: bf creation_date: 2011-07-26T08:39:48Z @@ -142319,8 +141690,8 @@ def: "Any process that activates or increases the frequency, rate or extent of a is_a: GO:2000833 ! positive regulation of steroid hormone secretion is_a: GO:2000834 ! regulation of androgen secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035935 ! androgen secretion -relationship: positively_regulates GO:0035935 ! androgen secretion +intersection_of: RO:0002213 GO:0035935 ! positively regulates androgen secretion +relationship: RO:0002213 GO:0035935 ! positively regulates androgen secretion created_by: bf creation_date: 2011-07-26T08:39:51Z @@ -142332,8 +141703,8 @@ def: "Any process that modulates the frequency, rate or extent of testosterone s is_a: GO:0032368 ! regulation of lipid transport is_a: GO:0046883 ! regulation of hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035936 ! testosterone secretion -relationship: regulates GO:0035936 ! testosterone secretion +intersection_of: RO:0002211 GO:0035936 ! regulates (processual) testosterone secretion +relationship: RO:0002211 GO:0035936 ! regulates (processual) testosterone secretion created_by: bf creation_date: 2011-07-26T08:42:29Z @@ -142346,8 +141717,8 @@ is_a: GO:0032369 ! negative regulation of lipid transport is_a: GO:0046888 ! negative regulation of hormone secretion is_a: GO:2000843 ! regulation of testosterone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035936 ! testosterone secretion -relationship: negatively_regulates GO:0035936 ! testosterone secretion +intersection_of: RO:0002212 GO:0035936 ! negatively regulates testosterone secretion +relationship: RO:0002212 GO:0035936 ! negatively regulates testosterone secretion created_by: bf creation_date: 2011-07-26T08:42:33Z @@ -142360,8 +141731,8 @@ is_a: GO:0032370 ! positive regulation of lipid transport is_a: GO:0046887 ! positive regulation of hormone secretion is_a: GO:2000843 ! regulation of testosterone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035936 ! testosterone secretion -relationship: positively_regulates GO:0035936 ! testosterone secretion +intersection_of: RO:0002213 GO:0035936 ! positively regulates testosterone secretion +relationship: RO:0002213 GO:0035936 ! positively regulates testosterone secretion created_by: bf creation_date: 2011-07-26T08:42:36Z @@ -142373,8 +141744,8 @@ def: "Any process that modulates the frequency, rate or extent of corticosteroid synonym: "regulation of corticosteroid secretion" RELATED [GOC:obol] is_a: GO:2000831 ! regulation of steroid hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035930 ! corticosteroid hormone secretion -relationship: regulates GO:0035930 ! corticosteroid hormone secretion +intersection_of: RO:0002211 GO:0035930 ! regulates (processual) corticosteroid hormone secretion +relationship: RO:0002211 GO:0035930 ! regulates (processual) corticosteroid hormone secretion created_by: bf creation_date: 2011-07-26T08:43:38Z @@ -142387,8 +141758,8 @@ synonym: "negative regulation of corticosteroid secretion" RELATED [GOC:obol] is_a: GO:2000832 ! negative regulation of steroid hormone secretion is_a: GO:2000846 ! regulation of corticosteroid hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035930 ! corticosteroid hormone secretion -relationship: negatively_regulates GO:0035930 ! corticosteroid hormone secretion +intersection_of: RO:0002212 GO:0035930 ! negatively regulates corticosteroid hormone secretion +relationship: RO:0002212 GO:0035930 ! negatively regulates corticosteroid hormone secretion created_by: bf creation_date: 2011-07-26T08:43:42Z @@ -142401,8 +141772,8 @@ synonym: "positive regulation of corticosteroid secretion" RELATED [GOC:obol] is_a: GO:2000833 ! positive regulation of steroid hormone secretion is_a: GO:2000846 ! regulation of corticosteroid hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035930 ! corticosteroid hormone secretion -relationship: positively_regulates GO:0035930 ! corticosteroid hormone secretion +intersection_of: RO:0002213 GO:0035930 ! positively regulates corticosteroid hormone secretion +relationship: RO:0002213 GO:0035930 ! positively regulates corticosteroid hormone secretion created_by: bf creation_date: 2011-07-26T08:43:45Z @@ -142413,8 +141784,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of glucocorticoid secretion." [GOC:sl] is_a: GO:2000846 ! regulation of corticosteroid hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035933 ! glucocorticoid secretion -relationship: regulates GO:0035933 ! glucocorticoid secretion +intersection_of: RO:0002211 GO:0035933 ! regulates (processual) glucocorticoid secretion +relationship: RO:0002211 GO:0035933 ! regulates (processual) glucocorticoid secretion created_by: bf creation_date: 2011-07-26T08:44:43Z @@ -142426,8 +141797,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:2000847 ! negative regulation of corticosteroid hormone secretion is_a: GO:2000849 ! regulation of glucocorticoid secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035933 ! glucocorticoid secretion -relationship: negatively_regulates GO:0035933 ! glucocorticoid secretion +intersection_of: RO:0002212 GO:0035933 ! negatively regulates glucocorticoid secretion +relationship: RO:0002212 GO:0035933 ! negatively regulates glucocorticoid secretion created_by: bf creation_date: 2011-07-26T08:44:48Z @@ -142439,8 +141810,8 @@ def: "Any process that activates or increases the frequency, rate or extent of g is_a: GO:2000848 ! positive regulation of corticosteroid hormone secretion is_a: GO:2000849 ! regulation of glucocorticoid secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035933 ! glucocorticoid secretion -relationship: positively_regulates GO:0035933 ! glucocorticoid secretion +intersection_of: RO:0002213 GO:0035933 ! positively regulates glucocorticoid secretion +relationship: RO:0002213 GO:0035933 ! positively regulates glucocorticoid secretion created_by: bf creation_date: 2011-07-26T08:44:51Z @@ -142451,8 +141822,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of mineralocorticoid secretion." [GOC:sl] is_a: GO:2000846 ! regulation of corticosteroid hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035931 ! mineralocorticoid secretion -relationship: regulates GO:0035931 ! mineralocorticoid secretion +intersection_of: RO:0002211 GO:0035931 ! regulates (processual) mineralocorticoid secretion +relationship: RO:0002211 GO:0035931 ! regulates (processual) mineralocorticoid secretion created_by: bf creation_date: 2011-07-26T08:46:38Z @@ -142464,8 +141835,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:2000847 ! negative regulation of corticosteroid hormone secretion is_a: GO:2000855 ! regulation of mineralocorticoid secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035931 ! mineralocorticoid secretion -relationship: negatively_regulates GO:0035931 ! mineralocorticoid secretion +intersection_of: RO:0002212 GO:0035931 ! negatively regulates mineralocorticoid secretion +relationship: RO:0002212 GO:0035931 ! negatively regulates mineralocorticoid secretion created_by: bf creation_date: 2011-07-26T08:46:42Z @@ -142477,8 +141848,8 @@ def: "Any process that activates or increases the frequency, rate or extent of m is_a: GO:2000848 ! positive regulation of corticosteroid hormone secretion is_a: GO:2000855 ! regulation of mineralocorticoid secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035931 ! mineralocorticoid secretion -relationship: positively_regulates GO:0035931 ! mineralocorticoid secretion +intersection_of: RO:0002213 GO:0035931 ! positively regulates mineralocorticoid secretion +relationship: RO:0002213 GO:0035931 ! positively regulates mineralocorticoid secretion created_by: bf creation_date: 2011-07-26T08:46:45Z @@ -142489,8 +141860,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of aldosterone secretion." [GOC:sl] is_a: GO:2000855 ! regulation of mineralocorticoid secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035932 ! aldosterone secretion -relationship: regulates GO:0035932 ! aldosterone secretion +intersection_of: RO:0002211 GO:0035932 ! regulates (processual) aldosterone secretion +relationship: RO:0002211 GO:0035932 ! regulates (processual) aldosterone secretion created_by: bf creation_date: 2011-07-26T08:47:27Z @@ -142502,8 +141873,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:2000856 ! negative regulation of mineralocorticoid secretion is_a: GO:2000858 ! regulation of aldosterone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035932 ! aldosterone secretion -relationship: negatively_regulates GO:0035932 ! aldosterone secretion +intersection_of: RO:0002212 GO:0035932 ! negatively regulates aldosterone secretion +relationship: RO:0002212 GO:0035932 ! negatively regulates aldosterone secretion created_by: bf creation_date: 2011-07-26T08:47:31Z @@ -142515,8 +141886,8 @@ def: "Any process that activates or increases the frequency, rate or extent of a is_a: GO:2000857 ! positive regulation of mineralocorticoid secretion is_a: GO:2000858 ! regulation of aldosterone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035932 ! aldosterone secretion -relationship: positively_regulates GO:0035932 ! aldosterone secretion +intersection_of: RO:0002213 GO:0035932 ! positively regulates aldosterone secretion +relationship: RO:0002213 GO:0035932 ! positively regulates aldosterone secretion created_by: bf creation_date: 2011-07-26T08:47:34Z @@ -142528,8 +141899,8 @@ def: "Any process that modulates the frequency, rate or extent of progesterone s is_a: GO:2000194 ! regulation of female gonad development is_a: GO:2000831 ! regulation of steroid hormone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042701 ! progesterone secretion -relationship: regulates GO:0042701 ! progesterone secretion +intersection_of: RO:0002211 GO:0042701 ! regulates (processual) progesterone secretion +relationship: RO:0002211 GO:0042701 ! regulates (processual) progesterone secretion created_by: bf creation_date: 2011-07-26T08:51:14Z @@ -142542,8 +141913,8 @@ is_a: GO:2000195 ! negative regulation of female gonad development is_a: GO:2000832 ! negative regulation of steroid hormone secretion is_a: GO:2000870 ! regulation of progesterone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042701 ! progesterone secretion -relationship: negatively_regulates GO:0042701 ! progesterone secretion +intersection_of: RO:0002212 GO:0042701 ! negatively regulates progesterone secretion +relationship: RO:0002212 GO:0042701 ! negatively regulates progesterone secretion created_by: bf creation_date: 2011-07-26T08:51:19Z @@ -142556,8 +141927,8 @@ is_a: GO:2000196 ! positive regulation of female gonad development is_a: GO:2000833 ! positive regulation of steroid hormone secretion is_a: GO:2000870 ! regulation of progesterone secretion intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042701 ! progesterone secretion -relationship: positively_regulates GO:0042701 ! progesterone secretion +intersection_of: RO:0002213 GO:0042701 ! positively regulates progesterone secretion +relationship: RO:0002213 GO:0042701 ! positively regulates progesterone secretion created_by: bf creation_date: 2011-07-26T08:51:22Z @@ -142570,8 +141941,8 @@ synonym: "regulation of pro-B cell development" RELATED [GOC:obol] synonym: "regulation of pro-B lymphocyte differentiation" EXACT [GOC:obol] is_a: GO:1905456 ! regulation of lymphoid progenitor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0002328 ! pro-B cell differentiation -relationship: regulates GO:0002328 ! pro-B cell differentiation +intersection_of: RO:0002211 GO:0002328 ! regulates (processual) pro-B cell differentiation +relationship: RO:0002211 GO:0002328 ! regulates (processual) pro-B cell differentiation created_by: yaf creation_date: 2011-08-02T03:05:45Z @@ -142585,8 +141956,8 @@ synonym: "negative regulation of pro-B lymphocyte differentiation" EXACT [GOC:ob is_a: GO:1905457 ! negative regulation of lymphoid progenitor cell differentiation is_a: GO:2000973 ! regulation of pro-B cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0002328 ! pro-B cell differentiation -relationship: negatively_regulates GO:0002328 ! pro-B cell differentiation +intersection_of: RO:0002212 GO:0002328 ! negatively regulates pro-B cell differentiation +relationship: RO:0002212 GO:0002328 ! negatively regulates pro-B cell differentiation created_by: yaf creation_date: 2011-08-02T03:05:50Z @@ -142600,8 +141971,8 @@ synonym: "positive regulation of pro-B lymphocyte differentiation" EXACT [GOC:ob is_a: GO:1905458 ! positive regulation of lymphoid progenitor cell differentiation is_a: GO:2000973 ! regulation of pro-B cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0002328 ! pro-B cell differentiation -relationship: positively_regulates GO:0002328 ! pro-B cell differentiation +intersection_of: RO:0002213 GO:0002328 ! positively regulates pro-B cell differentiation +relationship: RO:0002213 GO:0002328 ! positively regulates pro-B cell differentiation created_by: yaf creation_date: 2011-08-02T03:05:53Z @@ -142612,8 +141983,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of forebrain neuron differentiation." [GOC:obol] is_a: GO:0045664 ! regulation of neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0021879 ! forebrain neuron differentiation -relationship: regulates GO:0021879 ! forebrain neuron differentiation +intersection_of: RO:0002211 GO:0021879 ! regulates (processual) forebrain neuron differentiation +relationship: RO:0002211 GO:0021879 ! regulates (processual) forebrain neuron differentiation created_by: yaf creation_date: 2011-08-03T12:09:12Z @@ -142625,8 +141996,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0045665 ! negative regulation of neuron differentiation is_a: GO:2000977 ! regulation of forebrain neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0021879 ! forebrain neuron differentiation -relationship: negatively_regulates GO:0021879 ! forebrain neuron differentiation +intersection_of: RO:0002212 GO:0021879 ! negatively regulates forebrain neuron differentiation +relationship: RO:0002212 GO:0021879 ! negatively regulates forebrain neuron differentiation created_by: yaf creation_date: 2011-08-03T12:09:16Z @@ -142638,8 +142009,8 @@ def: "Any process that activates or increases the frequency, rate or extent of f is_a: GO:0045666 ! positive regulation of neuron differentiation is_a: GO:2000977 ! regulation of forebrain neuron differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0021879 ! forebrain neuron differentiation -relationship: positively_regulates GO:0021879 ! forebrain neuron differentiation +intersection_of: RO:0002213 GO:0021879 ! positively regulates forebrain neuron differentiation +relationship: RO:0002213 GO:0021879 ! positively regulates forebrain neuron differentiation created_by: yaf creation_date: 2011-08-03T12:09:19Z @@ -142651,8 +142022,8 @@ def: "Any process that modulates the frequency, rate or extent of inner ear rece synonym: "regulation of inner ear hair cell differentiation" EXACT [GOC:obol] is_a: GO:0045631 ! regulation of mechanoreceptor differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0060113 ! inner ear receptor cell differentiation -relationship: regulates GO:0060113 ! inner ear receptor cell differentiation +intersection_of: RO:0002211 GO:0060113 ! regulates (processual) inner ear receptor cell differentiation +relationship: RO:0002211 GO:0060113 ! regulates (processual) inner ear receptor cell differentiation created_by: yaf creation_date: 2011-08-03T02:38:43Z @@ -142665,8 +142036,8 @@ synonym: "negative regulation of inner ear hair cell differentiation" EXACT [GOC is_a: GO:0045632 ! negative regulation of mechanoreceptor differentiation is_a: GO:2000980 ! regulation of inner ear receptor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060113 ! inner ear receptor cell differentiation -relationship: negatively_regulates GO:0060113 ! inner ear receptor cell differentiation +intersection_of: RO:0002212 GO:0060113 ! negatively regulates inner ear receptor cell differentiation +relationship: RO:0002212 GO:0060113 ! negatively regulates inner ear receptor cell differentiation created_by: yaf creation_date: 2011-08-03T02:38:47Z @@ -142679,8 +142050,8 @@ synonym: "positive regulation of inner ear hair cell differentiation" EXACT [GOC is_a: GO:0045633 ! positive regulation of mechanoreceptor differentiation is_a: GO:2000980 ! regulation of inner ear receptor cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0060113 ! inner ear receptor cell differentiation -relationship: positively_regulates GO:0060113 ! inner ear receptor cell differentiation +intersection_of: RO:0002213 GO:0060113 ! positively regulates inner ear receptor cell differentiation +relationship: RO:0002213 GO:0060113 ! positively regulates inner ear receptor cell differentiation created_by: yaf creation_date: 2011-08-03T02:38:51Z @@ -142695,8 +142066,8 @@ synonym: "regulation of cellulose degradation" EXACT [GOC:obol] is_a: GO:0032950 ! regulation of beta-glucan metabolic process is_a: GO:0043470 ! regulation of carbohydrate catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030245 ! cellulose catabolic process -relationship: regulates GO:0030245 ! cellulose catabolic process +intersection_of: RO:0002211 GO:0030245 ! regulates (processual) cellulose catabolic process +relationship: RO:0002211 GO:0030245 ! regulates (processual) cellulose catabolic process created_by: tt creation_date: 2011-08-08T03:21:20Z @@ -142713,8 +142084,8 @@ is_a: GO:0010605 ! negative regulation of macromolecule metabolic process is_a: GO:0045912 ! negative regulation of carbohydrate metabolic process is_a: GO:2000997 ! regulation of cellulose catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030245 ! cellulose catabolic process -relationship: negatively_regulates GO:0030245 ! cellulose catabolic process +intersection_of: RO:0002212 GO:0030245 ! negatively regulates cellulose catabolic process +relationship: RO:0002212 GO:0030245 ! negatively regulates cellulose catabolic process created_by: tt creation_date: 2011-08-08T03:21:26Z @@ -142731,8 +142102,8 @@ is_a: GO:0010604 ! positive regulation of macromolecule metabolic process is_a: GO:0045913 ! positive regulation of carbohydrate metabolic process is_a: GO:2000997 ! regulation of cellulose catabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030245 ! cellulose catabolic process -relationship: positively_regulates GO:0030245 ! cellulose catabolic process +intersection_of: RO:0002213 GO:0030245 ! positively regulates cellulose catabolic process +relationship: RO:0002213 GO:0030245 ! positively regulates cellulose catabolic process created_by: tt creation_date: 2011-08-08T03:21:30Z @@ -142747,8 +142118,8 @@ synonym: "regulation of cellulose formation" EXACT [GOC:obol] synonym: "regulation of cellulose synthesis" EXACT [GOC:obol] is_a: GO:0032951 ! regulation of beta-glucan biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030244 ! cellulose biosynthetic process -relationship: regulates GO:0030244 ! cellulose biosynthetic process +intersection_of: RO:0002211 GO:0030244 ! regulates (processual) cellulose biosynthetic process +relationship: RO:0002211 GO:0030244 ! regulates (processual) cellulose biosynthetic process created_by: tt creation_date: 2011-08-08T08:42:17Z @@ -142765,8 +142136,8 @@ is_a: GO:0010558 ! negative regulation of macromolecule biosynthetic process is_a: GO:0045912 ! negative regulation of carbohydrate metabolic process is_a: GO:2001006 ! regulation of cellulose biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030244 ! cellulose biosynthetic process -relationship: negatively_regulates GO:0030244 ! cellulose biosynthetic process +intersection_of: RO:0002212 GO:0030244 ! negatively regulates cellulose biosynthetic process +relationship: RO:0002212 GO:0030244 ! negatively regulates cellulose biosynthetic process created_by: tt creation_date: 2011-08-08T08:42:24Z @@ -142783,8 +142154,8 @@ is_a: GO:0010557 ! positive regulation of macromolecule biosynthetic process is_a: GO:0045913 ! positive regulation of carbohydrate metabolic process is_a: GO:2001006 ! regulation of cellulose biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030244 ! cellulose biosynthetic process -relationship: positively_regulates GO:0030244 ! cellulose biosynthetic process +intersection_of: RO:0002213 GO:0030244 ! positively regulates cellulose biosynthetic process +relationship: RO:0002213 GO:0030244 ! positively regulates cellulose biosynthetic process created_by: tt creation_date: 2011-08-08T08:42:29Z @@ -142821,8 +142192,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of skeletal muscle cell differentiation." [GOC:obol] is_a: GO:0045595 ! regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035914 ! skeletal muscle cell differentiation -relationship: regulates GO:0035914 ! skeletal muscle cell differentiation +intersection_of: RO:0002211 GO:0035914 ! regulates (processual) skeletal muscle cell differentiation +relationship: RO:0002211 GO:0035914 ! regulates (processual) skeletal muscle cell differentiation created_by: yaf creation_date: 2011-08-11T08:54:37Z @@ -142834,8 +142205,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:2001014 ! regulation of skeletal muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035914 ! skeletal muscle cell differentiation -relationship: negatively_regulates GO:0035914 ! skeletal muscle cell differentiation +intersection_of: RO:0002212 GO:0035914 ! negatively regulates skeletal muscle cell differentiation +relationship: RO:0002212 GO:0035914 ! negatively regulates skeletal muscle cell differentiation created_by: yaf creation_date: 2011-08-11T08:54:41Z @@ -142847,8 +142218,8 @@ def: "Any process that activates or increases the frequency, rate or extent of s is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:2001014 ! regulation of skeletal muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035914 ! skeletal muscle cell differentiation -relationship: positively_regulates GO:0035914 ! skeletal muscle cell differentiation +intersection_of: RO:0002213 GO:0035914 ! positively regulates skeletal muscle cell differentiation +relationship: RO:0002213 GO:0035914 ! positively regulates skeletal muscle cell differentiation created_by: yaf creation_date: 2011-08-11T08:54:44Z @@ -142861,8 +142232,8 @@ synonym: "regulation of retrograde axonal transport" EXACT [GOC:obol] is_a: GO:0032386 ! regulation of intracellular transport is_a: GO:0060632 ! regulation of microtubule-based movement intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008090 ! retrograde axonal transport -relationship: regulates GO:0008090 ! retrograde axonal transport +intersection_of: RO:0002211 GO:0008090 ! regulates (processual) retrograde axonal transport +relationship: RO:0002211 GO:0008090 ! regulates (processual) retrograde axonal transport created_by: kmv creation_date: 2011-08-11T09:44:42Z @@ -142875,8 +142246,8 @@ synonym: "negative regulation of retrograde axonal transport" EXACT [GOC:obol] is_a: GO:0032387 ! negative regulation of intracellular transport is_a: GO:2001017 ! regulation of retrograde axon cargo transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008090 ! retrograde axonal transport -relationship: negatively_regulates GO:0008090 ! retrograde axonal transport +intersection_of: RO:0002212 GO:0008090 ! negatively regulates retrograde axonal transport +relationship: RO:0002212 GO:0008090 ! negatively regulates retrograde axonal transport created_by: kmv creation_date: 2011-08-11T09:44:46Z @@ -142889,8 +142260,8 @@ synonym: "positive regulation of retrograde axonal transport" EXACT [GOC:obol] is_a: GO:0032388 ! positive regulation of intracellular transport is_a: GO:2001017 ! regulation of retrograde axon cargo transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008090 ! retrograde axonal transport -relationship: positively_regulates GO:0008090 ! retrograde axonal transport +intersection_of: RO:0002213 GO:0008090 ! positively regulates retrograde axonal transport +relationship: RO:0002213 GO:0008090 ! positively regulates retrograde axonal transport created_by: kmv creation_date: 2011-08-11T09:44:49Z @@ -142902,8 +142273,8 @@ def: "Any process that modulates the frequency, rate or extent of endothelial ce is_a: GO:0010594 ! regulation of endothelial cell migration is_a: GO:0050920 ! regulation of chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035767 ! endothelial cell chemotaxis -relationship: regulates GO:0035767 ! endothelial cell chemotaxis +intersection_of: RO:0002211 GO:0035767 ! regulates (processual) endothelial cell chemotaxis +relationship: RO:0002211 GO:0035767 ! regulates (processual) endothelial cell chemotaxis created_by: rl creation_date: 2011-08-22T01:07:26Z @@ -142916,8 +142287,8 @@ is_a: GO:0010596 ! negative regulation of endothelial cell migration is_a: GO:0050922 ! negative regulation of chemotaxis is_a: GO:2001026 ! regulation of endothelial cell chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035767 ! endothelial cell chemotaxis -relationship: negatively_regulates GO:0035767 ! endothelial cell chemotaxis +intersection_of: RO:0002212 GO:0035767 ! negatively regulates endothelial cell chemotaxis +relationship: RO:0002212 GO:0035767 ! negatively regulates endothelial cell chemotaxis created_by: rl creation_date: 2011-08-22T01:07:31Z @@ -142930,8 +142301,8 @@ is_a: GO:0010595 ! positive regulation of endothelial cell migration is_a: GO:0050921 ! positive regulation of chemotaxis is_a: GO:2001026 ! regulation of endothelial cell chemotaxis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035767 ! endothelial cell chemotaxis -relationship: positively_regulates GO:0035767 ! endothelial cell chemotaxis +intersection_of: RO:0002213 GO:0035767 ! positively regulates endothelial cell chemotaxis +relationship: RO:0002213 GO:0035767 ! positively regulates endothelial cell chemotaxis created_by: rl creation_date: 2011-08-22T01:07:34Z @@ -142942,8 +142313,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of tongue muscle cell differentiation." [GOC:obol] is_a: GO:1902809 ! regulation of skeletal muscle fiber differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035981 ! tongue muscle cell differentiation -relationship: regulates GO:0035981 ! tongue muscle cell differentiation +intersection_of: RO:0002211 GO:0035981 ! regulates (processual) tongue muscle cell differentiation +relationship: RO:0002211 GO:0035981 ! regulates (processual) tongue muscle cell differentiation created_by: yaf creation_date: 2011-08-24T11:10:16Z @@ -142955,8 +142326,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:1902810 ! negative regulation of skeletal muscle fiber differentiation is_a: GO:2001035 ! regulation of tongue muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035981 ! tongue muscle cell differentiation -relationship: negatively_regulates GO:0035981 ! tongue muscle cell differentiation +intersection_of: RO:0002212 GO:0035981 ! negatively regulates tongue muscle cell differentiation +relationship: RO:0002212 GO:0035981 ! negatively regulates tongue muscle cell differentiation created_by: yaf creation_date: 2011-08-24T11:10:20Z @@ -142968,8 +142339,8 @@ def: "Any process that activates or increases the frequency, rate or extent of t is_a: GO:1902811 ! positive regulation of skeletal muscle fiber differentiation is_a: GO:2001035 ! regulation of tongue muscle cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035981 ! tongue muscle cell differentiation -relationship: positively_regulates GO:0035981 ! tongue muscle cell differentiation +intersection_of: RO:0002213 GO:0035981 ! positively regulates tongue muscle cell differentiation +relationship: RO:0002213 GO:0035981 ! positively regulates tongue muscle cell differentiation created_by: yaf creation_date: 2011-08-24T11:10:22Z @@ -142980,8 +142351,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of cellular response to drug." [GOC:obol] is_a: GO:0065007 ! biological regulation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0071466 ! cellular response to xenobiotic stimulus -relationship: regulates GO:0071466 ! cellular response to xenobiotic stimulus +intersection_of: RO:0002211 GO:0071466 ! regulates (processual) cellular response to xenobiotic stimulus +relationship: RO:0002211 GO:0071466 ! regulates (processual) cellular response to xenobiotic stimulus created_by: yaf creation_date: 2011-08-27T04:12:19Z @@ -142992,8 +142363,8 @@ namespace: biological_process def: "Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to drug." [GOC:obol] is_a: GO:2001038 ! regulation of cellular response to drug intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0071466 ! cellular response to xenobiotic stimulus -relationship: negatively_regulates GO:0071466 ! cellular response to xenobiotic stimulus +intersection_of: RO:0002212 GO:0071466 ! negatively regulates cellular response to xenobiotic stimulus +relationship: RO:0002212 GO:0071466 ! negatively regulates cellular response to xenobiotic stimulus created_by: yaf creation_date: 2011-08-27T04:12:23Z @@ -143004,8 +142375,8 @@ namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of cellular response to drug." [GOC:obol] is_a: GO:2001038 ! regulation of cellular response to drug intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0071466 ! cellular response to xenobiotic stimulus -relationship: positively_regulates GO:0071466 ! cellular response to xenobiotic stimulus +intersection_of: RO:0002213 GO:0071466 ! positively regulates cellular response to xenobiotic stimulus +relationship: RO:0002213 GO:0071466 ! positively regulates cellular response to xenobiotic stimulus created_by: yaf creation_date: 2011-08-27T04:12:25Z @@ -143018,8 +142389,8 @@ synonym: "regulation of muscle attachment cell differentiation" EXACT [GOC:obol] synonym: "regulation of tenocyte differentiation" RELATED [GOC:obol] is_a: GO:0045595 ! regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0035990 ! tendon cell differentiation -relationship: regulates GO:0035990 ! tendon cell differentiation +intersection_of: RO:0002211 GO:0035990 ! regulates (processual) tendon cell differentiation +relationship: RO:0002211 GO:0035990 ! regulates (processual) tendon cell differentiation created_by: yaf creation_date: 2011-09-01T09:20:32Z @@ -143033,8 +142404,8 @@ synonym: "negative regulation of tenocyte differentiation" RELATED [GOC:obol] is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:2001049 ! regulation of tendon cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0035990 ! tendon cell differentiation -relationship: negatively_regulates GO:0035990 ! tendon cell differentiation +intersection_of: RO:0002212 GO:0035990 ! negatively regulates tendon cell differentiation +relationship: RO:0002212 GO:0035990 ! negatively regulates tendon cell differentiation created_by: yaf creation_date: 2011-09-01T09:20:38Z @@ -143048,8 +142419,8 @@ synonym: "positive regulation of tenocyte differentiation" RELATED [GOC:obol] is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:2001049 ! regulation of tendon cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0035990 ! tendon cell differentiation -relationship: positively_regulates GO:0035990 ! tendon cell differentiation +intersection_of: RO:0002213 GO:0035990 ! positively regulates tendon cell differentiation +relationship: RO:0002213 GO:0035990 ! positively regulates tendon cell differentiation created_by: yaf creation_date: 2011-09-01T09:20:42Z @@ -143061,8 +142432,8 @@ def: "Any process that modulates the frequency, rate or extent of mesenchymal ce synonym: "regulation of mesenchymal cell apoptosis" NARROW [] is_a: GO:0042981 ! regulation of apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0097152 ! mesenchymal cell apoptotic process -relationship: regulates GO:0097152 ! mesenchymal cell apoptotic process +intersection_of: RO:0002211 GO:0097152 ! regulates (processual) mesenchymal cell apoptotic process +relationship: RO:0002211 GO:0097152 ! regulates (processual) mesenchymal cell apoptotic process created_by: yaf creation_date: 2011-09-08T02:49:59Z @@ -143075,8 +142446,8 @@ synonym: "negative regulation of mesenchymal cell apoptosis" NARROW [] is_a: GO:0043066 ! negative regulation of apoptotic process is_a: GO:2001053 ! regulation of mesenchymal cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0097152 ! mesenchymal cell apoptotic process -relationship: negatively_regulates GO:0097152 ! mesenchymal cell apoptotic process +intersection_of: RO:0002212 GO:0097152 ! negatively regulates mesenchymal cell apoptotic process +relationship: RO:0002212 GO:0097152 ! negatively regulates mesenchymal cell apoptotic process created_by: yaf creation_date: 2011-09-08T02:50:05Z @@ -143089,8 +142460,8 @@ synonym: "positive regulation of mesenchymal cell apoptosis" NARROW [] is_a: GO:0043065 ! positive regulation of apoptotic process is_a: GO:2001053 ! regulation of mesenchymal cell apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0097152 ! mesenchymal cell apoptotic process -relationship: positively_regulates GO:0097152 ! mesenchymal cell apoptotic process +intersection_of: RO:0002213 GO:0097152 ! positively regulates mesenchymal cell apoptotic process +relationship: RO:0002213 GO:0097152 ! positively regulates mesenchymal cell apoptotic process created_by: yaf creation_date: 2011-09-08T02:50:09Z @@ -143103,8 +142474,8 @@ synonym: "animal starch binding" RELATED [GOC:obol] synonym: "liver starch binding" RELATED [GOC:obol] is_a: GO:0030247 ! polysaccharide binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:28087 ! glycogen -relationship: has_primary_input CHEBI:28087 ! glycogen +intersection_of: RO:0004009 CHEBI:28087 ! has primary input glycogen +relationship: RO:0004009 CHEBI:28087 ! has primary input glycogen created_by: jl creation_date: 2011-09-14T12:01:06Z @@ -143115,8 +142486,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of phospholipid transport." [GOC:obol] is_a: GO:0032368 ! regulation of lipid transport intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0015914 ! phospholipid transport -relationship: regulates GO:0015914 ! phospholipid transport +intersection_of: RO:0002211 GO:0015914 ! regulates (processual) phospholipid transport +relationship: RO:0002211 GO:0015914 ! regulates (processual) phospholipid transport created_by: kmv creation_date: 2011-10-14T06:16:06Z @@ -143128,8 +142499,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:0032369 ! negative regulation of lipid transport is_a: GO:2001138 ! regulation of phospholipid transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0015914 ! phospholipid transport -relationship: negatively_regulates GO:0015914 ! phospholipid transport +intersection_of: RO:0002212 GO:0015914 ! negatively regulates phospholipid transport +relationship: RO:0002212 GO:0015914 ! negatively regulates phospholipid transport created_by: kmv creation_date: 2011-10-14T06:16:11Z @@ -143141,8 +142512,8 @@ def: "Any process that activates or increases the frequency, rate or extent of p is_a: GO:0032370 ! positive regulation of lipid transport is_a: GO:2001138 ! regulation of phospholipid transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0015914 ! phospholipid transport -relationship: positively_regulates GO:0015914 ! phospholipid transport +intersection_of: RO:0002213 GO:0015914 ! positively regulates phospholipid transport +relationship: RO:0002213 GO:0015914 ! positively regulates phospholipid transport created_by: kmv creation_date: 2011-10-14T06:16:14Z @@ -143158,8 +142529,8 @@ synonym: "regulation of RNA synthesis" EXACT [GOC:obol] is_a: GO:0010556 ! regulation of macromolecule biosynthetic process is_a: GO:0051252 ! regulation of RNA metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0032774 ! RNA biosynthetic process -relationship: regulates GO:0032774 ! RNA biosynthetic process +intersection_of: RO:0002211 GO:0032774 ! regulates (processual) RNA biosynthetic process +relationship: RO:0002211 GO:0032774 ! regulates (processual) RNA biosynthetic process created_by: dph creation_date: 2011-10-17T11:36:25Z @@ -143172,8 +142543,8 @@ is_a: GO:0050878 ! regulation of body fluid levels is_a: GO:0051049 ! regulation of transport is_a: GO:0098801 ! regulation of renal system process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0003097 ! renal water transport -relationship: regulates GO:0003097 ! renal water transport +intersection_of: RO:0002211 GO:0003097 ! regulates (processual) renal water transport +relationship: RO:0002211 GO:0003097 ! regulates (processual) renal water transport created_by: yaf creation_date: 2011-10-24T11:37:51Z @@ -143186,8 +142557,8 @@ is_a: GO:0051051 ! negative regulation of transport is_a: GO:0051241 ! negative regulation of multicellular organismal process is_a: GO:2001151 ! regulation of renal water transport intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003097 ! renal water transport -relationship: negatively_regulates GO:0003097 ! renal water transport +intersection_of: RO:0002212 GO:0003097 ! negatively regulates renal water transport +relationship: RO:0002212 GO:0003097 ! negatively regulates renal water transport created_by: yaf creation_date: 2011-10-24T11:37:57Z @@ -143200,8 +142571,8 @@ is_a: GO:0051050 ! positive regulation of transport is_a: GO:0051240 ! positive regulation of multicellular organismal process is_a: GO:2001151 ! regulation of renal water transport intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003097 ! renal water transport -relationship: positively_regulates GO:0003097 ! renal water transport +intersection_of: RO:0002213 GO:0003097 ! positively regulates renal water transport +relationship: RO:0002213 GO:0003097 ! positively regulates renal water transport created_by: yaf creation_date: 2011-10-24T11:38:01Z @@ -143218,8 +142589,8 @@ synonym: "regulation of ATP synthesis" EXACT [GOC:obol] is_a: GO:0009889 ! regulation of biosynthetic process is_a: GO:1903578 ! regulation of ATP metabolic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0006754 ! ATP biosynthetic process -relationship: regulates GO:0006754 ! ATP biosynthetic process +intersection_of: RO:0002211 GO:0006754 ! regulates (processual) ATP biosynthetic process +relationship: RO:0002211 GO:0006754 ! regulates (processual) ATP biosynthetic process created_by: kmv creation_date: 2011-10-26T03:18:03Z @@ -143237,8 +142608,8 @@ is_a: GO:0009890 ! negative regulation of biosynthetic process is_a: GO:1903579 ! negative regulation of ATP metabolic process is_a: GO:2001169 ! regulation of ATP biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0006754 ! ATP biosynthetic process -relationship: negatively_regulates GO:0006754 ! ATP biosynthetic process +intersection_of: RO:0002212 GO:0006754 ! negatively regulates ATP biosynthetic process +relationship: RO:0002212 GO:0006754 ! negatively regulates ATP biosynthetic process created_by: kmv creation_date: 2011-10-26T03:18:13Z @@ -143256,8 +142627,8 @@ is_a: GO:0009891 ! positive regulation of biosynthetic process is_a: GO:1903580 ! positive regulation of ATP metabolic process is_a: GO:2001169 ! regulation of ATP biosynthetic process intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0006754 ! ATP biosynthetic process -relationship: positively_regulates GO:0006754 ! ATP biosynthetic process +intersection_of: RO:0002213 GO:0006754 ! positively regulates ATP biosynthetic process +relationship: RO:0002213 GO:0006754 ! positively regulates ATP biosynthetic process created_by: kmv creation_date: 2011-10-26T03:18:26Z @@ -143268,8 +142639,8 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of dendritic cell differentiation." [GOC:obol] is_a: GO:1902105 ! regulation of leukocyte differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0097028 ! dendritic cell differentiation -relationship: regulates GO:0097028 ! dendritic cell differentiation +intersection_of: RO:0002211 GO:0097028 ! regulates (processual) dendritic cell differentiation +relationship: RO:0002211 GO:0097028 ! regulates (processual) dendritic cell differentiation created_by: yaf creation_date: 2011-11-04T02:01:27Z @@ -143281,8 +142652,8 @@ def: "Any process that stops, prevents or reduces the frequency, rate or extent is_a: GO:1902106 ! negative regulation of leukocyte differentiation is_a: GO:2001198 ! regulation of dendritic cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0097028 ! dendritic cell differentiation -relationship: negatively_regulates GO:0097028 ! dendritic cell differentiation +intersection_of: RO:0002212 GO:0097028 ! negatively regulates dendritic cell differentiation +relationship: RO:0002212 GO:0097028 ! negatively regulates dendritic cell differentiation created_by: yaf creation_date: 2011-11-04T02:01:33Z @@ -143294,8 +142665,8 @@ def: "Any process that activates or increases the frequency, rate or extent of d is_a: GO:1902107 ! positive regulation of leukocyte differentiation is_a: GO:2001198 ! regulation of dendritic cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0097028 ! dendritic cell differentiation -relationship: positively_regulates GO:0097028 ! dendritic cell differentiation +intersection_of: RO:0002213 GO:0097028 ! positively regulates dendritic cell differentiation +relationship: RO:0002213 GO:0097028 ! positively regulates dendritic cell differentiation created_by: yaf creation_date: 2011-11-04T02:01:36Z @@ -143307,8 +142678,8 @@ def: "Any process that modulates the frequency, rate or extent of osteoclast dev synonym: "regulation of osteoclast cell development" EXACT [GOC:obol] is_a: GO:1903706 ! regulation of hemopoiesis intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0036035 ! osteoclast development -relationship: regulates GO:0036035 ! osteoclast development +intersection_of: RO:0002211 GO:0036035 ! regulates (processual) osteoclast development +relationship: RO:0002211 GO:0036035 ! regulates (processual) osteoclast development created_by: yaf creation_date: 2011-11-10T10:58:59Z @@ -143321,9 +142692,9 @@ synonym: "negative regulation of osteoclast cell development" EXACT [GOC:obol] is_a: GO:0045671 ! negative regulation of osteoclast differentiation is_a: GO:2001204 ! regulation of osteoclast development intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0036035 ! osteoclast development -relationship: negatively_regulates GO:0030316 ! osteoclast differentiation -relationship: negatively_regulates GO:0036035 ! osteoclast development +intersection_of: RO:0002212 GO:0036035 ! negatively regulates osteoclast development +relationship: RO:0002212 GO:0030316 ! negatively regulates osteoclast differentiation +relationship: RO:0002212 GO:0036035 ! negatively regulates osteoclast development created_by: yaf creation_date: 2011-11-10T10:59:06Z @@ -143336,9 +142707,9 @@ synonym: "positive regulation of osteoclast cell development" EXACT [GOC:obol] is_a: GO:0045672 ! positive regulation of osteoclast differentiation is_a: GO:2001204 ! regulation of osteoclast development intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0036035 ! osteoclast development -relationship: positively_regulates GO:0030316 ! osteoclast differentiation -relationship: positively_regulates GO:0036035 ! osteoclast development +intersection_of: RO:0002213 GO:0036035 ! positively regulates osteoclast development +relationship: RO:0002213 GO:0030316 ! positively regulates osteoclast differentiation +relationship: RO:0002213 GO:0036035 ! positively regulates osteoclast development created_by: yaf creation_date: 2011-11-10T10:59:12Z @@ -143350,8 +142721,8 @@ def: "Any process that modulates the frequency, rate or extent of vasculogenesis synonym: "regulation of vascular morphogenesis" EXACT [GOC:obol] is_a: GO:0045595 ! regulation of cell differentiation intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001570 ! vasculogenesis -relationship: regulates GO:0001570 ! vasculogenesis +intersection_of: RO:0002211 GO:0001570 ! regulates (processual) vasculogenesis +relationship: RO:0002211 GO:0001570 ! regulates (processual) vasculogenesis created_by: yaf creation_date: 2011-11-15T01:22:31Z @@ -143364,8 +142735,8 @@ synonym: "negative regulation of vascular morphogenesis" EXACT [GOC:obol] is_a: GO:0045596 ! negative regulation of cell differentiation is_a: GO:2001212 ! regulation of vasculogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001570 ! vasculogenesis -relationship: negatively_regulates GO:0001570 ! vasculogenesis +intersection_of: RO:0002212 GO:0001570 ! negatively regulates vasculogenesis +relationship: RO:0002212 GO:0001570 ! negatively regulates vasculogenesis created_by: yaf creation_date: 2011-11-15T01:22:36Z @@ -143378,8 +142749,8 @@ synonym: "positive regulation of vascular morphogenesis" EXACT [GOC:obol] is_a: GO:0045597 ! positive regulation of cell differentiation is_a: GO:2001212 ! regulation of vasculogenesis intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001570 ! vasculogenesis -relationship: positively_regulates GO:0001570 ! vasculogenesis +intersection_of: RO:0002213 GO:0001570 ! positively regulates vasculogenesis +relationship: RO:0002213 GO:0001570 ! positively regulates vasculogenesis created_by: yaf creation_date: 2011-11-15T01:22:39Z @@ -143393,10 +142764,10 @@ synonym: "regulation of neuron guidance" RELATED [GOC:obol] synonym: "regulation of neuronal migration" EXACT [GOC:obol] is_a: GO:0030334 ! regulation of cell migration intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0001764 ! neuron migration +intersection_of: RO:0002211 GO:0001764 ! regulates (processual) neuron migration relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa -relationship: regulates GO:0001764 ! neuron migration +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa +relationship: RO:0002211 GO:0001764 ! regulates (processual) neuron migration created_by: kmv creation_date: 2011-11-17T10:01:38Z @@ -143411,8 +142782,8 @@ synonym: "negative regulation of neuronal migration" EXACT [GOC:obol] is_a: GO:0030336 ! negative regulation of cell migration is_a: GO:2001222 ! regulation of neuron migration intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0001764 ! neuron migration -relationship: negatively_regulates GO:0001764 ! neuron migration +intersection_of: RO:0002212 GO:0001764 ! negatively regulates neuron migration +relationship: RO:0002212 GO:0001764 ! negatively regulates neuron migration created_by: kmv creation_date: 2011-11-17T10:01:45Z @@ -143427,8 +142798,8 @@ synonym: "positive regulation of neuronal migration" EXACT [GOC:obol] is_a: GO:0030335 ! positive regulation of cell migration is_a: GO:2001222 ! regulation of neuron migration intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0001764 ! neuron migration -relationship: positively_regulates GO:0001764 ! neuron migration +intersection_of: RO:0002213 GO:0001764 ! positively regulates neuron migration +relationship: RO:0002213 GO:0001764 ! positively regulates neuron migration created_by: kmv creation_date: 2011-11-17T10:01:49Z @@ -143441,9 +142812,9 @@ synonym: "regulation of apoptotic signalling pathway" EXACT [GOC:mah] is_a: GO:0009966 ! regulation of signal transduction is_a: GO:0042981 ! regulation of apoptotic process intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0097190 ! apoptotic signaling pathway -relationship: regulates GO:0006915 ! apoptotic process -relationship: regulates GO:0097190 ! apoptotic signaling pathway +intersection_of: RO:0002211 GO:0097190 ! regulates (processual) apoptotic signaling pathway +relationship: RO:0002211 GO:0006915 ! regulates (processual) apoptotic process +relationship: RO:0002211 GO:0097190 ! regulates (processual) apoptotic signaling pathway created_by: pr creation_date: 2011-11-24T01:20:49Z @@ -143457,9 +142828,9 @@ is_a: GO:0009968 ! negative regulation of signal transduction is_a: GO:0043066 ! negative regulation of apoptotic process is_a: GO:2001233 ! regulation of apoptotic signaling pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0097190 ! apoptotic signaling pathway -relationship: negatively_regulates GO:0006915 ! apoptotic process -relationship: negatively_regulates GO:0097190 ! apoptotic signaling pathway +intersection_of: RO:0002212 GO:0097190 ! negatively regulates apoptotic signaling pathway +relationship: RO:0002212 GO:0006915 ! negatively regulates apoptotic process +relationship: RO:0002212 GO:0097190 ! negatively regulates apoptotic signaling pathway created_by: pr creation_date: 2011-11-24T01:20:54Z @@ -143473,10 +142844,10 @@ is_a: GO:0009967 ! positive regulation of signal transduction is_a: GO:0043065 ! positive regulation of apoptotic process is_a: GO:2001233 ! regulation of apoptotic signaling pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0097190 ! apoptotic signaling pathway +intersection_of: RO:0002213 GO:0097190 ! positively regulates apoptotic signaling pathway relationship: never_in_taxon NCBITaxon:4896 ! Schizosaccharomyces pombe -relationship: positively_regulates GO:0006915 ! apoptotic process -relationship: positively_regulates GO:0097190 ! apoptotic signaling pathway +relationship: RO:0002213 GO:0006915 ! positively regulates apoptotic process +relationship: RO:0002213 GO:0097190 ! positively regulates apoptotic signaling pathway created_by: pr creation_date: 2011-11-24T01:20:58Z @@ -143492,8 +142863,8 @@ synonym: "negative regulation of nuclear genome maintenance" RELATED [GOC:obol] is_a: GO:0010639 ! negative regulation of organelle organization is_a: GO:0033044 ! regulation of chromosome organization intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0051276 ! chromosome organization -relationship: negatively_regulates GO:0051276 ! chromosome organization +intersection_of: RO:0002212 GO:0051276 ! negatively regulates chromosome organization +relationship: RO:0002212 GO:0051276 ! negatively regulates chromosome organization created_by: yaf creation_date: 2011-12-02T02:01:20Z @@ -143509,8 +142880,8 @@ synonym: "positive regulation of nuclear genome maintenance" RELATED [GOC:obol] is_a: GO:0010638 ! positive regulation of organelle organization is_a: GO:0033044 ! regulation of chromosome organization intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0051276 ! chromosome organization -relationship: positively_regulates GO:0051276 ! chromosome organization +intersection_of: RO:0002213 GO:0051276 ! positively regulates chromosome organization +relationship: RO:0002213 GO:0051276 ! positively regulates chromosome organization created_by: yaf creation_date: 2011-12-02T02:01:26Z @@ -143522,7 +142893,6 @@ is_a: IAO:0000030 ! information content entity [Term] id: IAO:0000030 name: information content entity -is_a: BFO:0000031 ! generically dependent continuant [Term] id: IAO:0000078 @@ -143588,7 +142958,7 @@ namespace: behavior_ontology def: "A feeding behavior associated with the intake or the frequency of intake or preference or manner of intake of food." [] {source="NBO:GVG"} synonym: "eating behaviour" EXACT [] is_a: NBO:0002436 ! regulation of feeding behavior -relationship: regulates NBO:0000134 ! food consumption +relationship: RO:0002211 NBO:0000134 ! regulates (processual) food consumption created_by: George Gkoutos [Term] @@ -143598,7 +142968,7 @@ namespace: behavior_ontology def: "A feeding behavior associated with the intake or the frequency of intake or preference or manner of intake of liquids." [] {source="NBO:GVG"} synonym: "drinking behaviour" EXACT [] is_a: NBO:0002436 ! regulation of feeding behavior -relationship: regulates NBO:0000130 ! liquid consumption +relationship: RO:0002211 NBO:0000130 ! regulates (processual) liquid consumption created_by: George Gkoutos [Term] @@ -143862,7 +143232,7 @@ id: NBO:0001786 name: regulation of behavior def: "\"Any process that modulates the frequency, rate or extent of behavior, the specific actions or reactions of an organism in response to external or internal stimuli.\" [GO:0050795]" [] is_a: NBO:0000313 ! behavior process -relationship: regulates NBO:0000313 ! behavior process +relationship: RO:0002211 NBO:0000313 ! regulates (processual) behavior process created_by: George Gkoutos [Term] @@ -143878,7 +143248,7 @@ id: NBO:0002169 name: regulation of consumption behavior def: "Any process that modulates the frequency, rate or extent of consumption behavior, the specific actions or reactions of an organism in response to external or internal stimuli." [] {source="NBOC:GVG"} is_a: NBO:0001786 ! regulation of behavior -relationship: regulates NBO:0001845 ! consumption behavior +relationship: RO:0002211 NBO:0001845 ! regulates (processual) consumption behavior created_by: George Gkoutos [Term] @@ -143893,7 +143263,7 @@ id: NBO:0002468 name: regulation of water consumption def: "Any process that modulates the frequency, rate or extent of water consumption, the specific actions or reactions of an organism in response to external or internal stimuli." [] {source="NBOC:GVG"} is_a: NBO:0000064 ! regulation of drinking behavior -relationship: regulates NBO:0000132 ! water consumption +relationship: RO:0002211 NBO:0000132 ! regulates (processual) water consumption created_by: George Gkoutos [Term] @@ -148523,6 +147893,7 @@ name: quality namespace: quality alt_id: PATO:0000072 def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" [PATOC:GVG] +is_a: BFO:0000020 ! specifically dependent continuant [Term] id: PATO:0000014 @@ -148560,7 +147931,7 @@ subset: attribute_slim subset: relational_slim subset: scalar_slim synonym: "concentration" EXACT [] -is_a: PATO:0002182 ! molecular quality +is_a: PATO:0000070 ! amount [Term] id: PATO:0000051 @@ -148607,6 +147978,25 @@ synonym: "distribution" EXACT [] synonym: "pattern" RELATED [] is_a: PATO:0000051 ! morphology +[Term] +id: PATO:0000070 +name: amount +namespace: quality +alt_id: PATO:0000053 +alt_id: PATO:0000071 +alt_id: PATO:0001169 +alt_id: PATO:0001226 +def: "The number of entities of this type that are part of the whole organism." [PATOC:GVG] +comment: This term was originally named "presence". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10. +subset: attribute_slim +synonym: "count in organism" RELATED [] +synonym: "number" RELATED [] +synonym: "presence" RELATED [] +synonym: "presence or absence in organism" EXACT [] +synonym: "quantitative" EXACT [] +is_a: PATO:0103000 ! quantitative +relationship: RO:0015012 PATO:0001555 ! reciprocal of has number of + [Term] id: PATO:0000136 name: closure @@ -149115,16 +148505,6 @@ subset: mpath_slim subset: value_slim is_a: PATO:0001404 ! nucleate quality -[Term] -id: PATO:0001406 -name: binucleate -namespace: quality -def: "A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei." [Biology-online:Biology-online] -subset: cell_quality -subset: mpath_slim -subset: value_slim -is_a: PATO:0001908 ! multinucleate - [Term] id: PATO:0001407 name: mononucleate @@ -149137,9 +148517,9 @@ is_a: PATO:0002505 ! nucleated [Term] id: PATO:0001408 -name: ciliatedness +name: ciliated namespace: quality -def: "A cellular quality inhering in a bearer by virtue of the bearer's having thin, tail-like projections extending outwards from the cell body." [Wikipedia:http\://en.wikipedia.org/wiki/Ciliated] +def: "A cellular quality inhering in a bearer by virtue of the bearer's having one or more cilia as a part." [PMID:36924208, wikipedia:Cilium] subset: cell_quality subset: value_slim is_a: PATO:0001396 ! cellular quality @@ -149263,6 +148643,22 @@ subset: attribute_slim synonym: "liquidity" EXACT [] is_a: PATO:0002198 ! quality of a substance +[Term] +id: PATO:0001555 +name: has number of +namespace: quality +def: "The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts." [PATOC:CJM] +subset: attribute_slim +subset: relational_slim +synonym: "cardinality" RELATED [] +synonym: "extra or missing physical or functional parts" EXACT [] +synonym: "has or lacks parts of type" EXACT [] +synonym: "mereological quality" EXACT [] +synonym: "number" RELATED [] +synonym: "number of" EXACT [] +xref: OBO_REL:has_part +is_a: PATO:0000070 ! amount + [Term] id: PATO:0001579 name: contractility @@ -149384,7 +148780,7 @@ synonym: "rod-like" EXACT [] synonym: "rod-shaped" EXACT [] synonym: "tubulate" NARROW [] is_a: PATO:0002007 ! convex 3-D shape -relationship: has_cross_section PATO:0000411 ! circular +relationship: RO:0015011 PATO:0000411 ! has cross section circular [Term] id: PATO:0001874 @@ -149512,7 +148908,7 @@ comment: Use this term or an is_a child of this term when the entire shape of th subset: attribute_slim xref: Image:http\://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png is_a: PATO:0002266 ! 3-D shape -relationship: has_cross_section PATO:0002006 ! 2-D shape +relationship: RO:0015011 PATO:0002006 ! has cross section 2-D shape [Term] id: PATO:0002008 @@ -149616,17 +149012,6 @@ is_a: PATO:0000141 ! structure relationship: dc-contributor https://orcid.org/0000-0002-2061-091X creation_date: 2009-10-06T04:37:14Z -[Term] -id: PATO:0002182 -name: molecular quality -namespace: quality -alt_id: PATO:0002061 -def: "A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc." [PATOC:GVG] -synonym: "relational molecular quality" EXACT [] -is_a: PATO:0001241 ! physical object quality -relationship: dc-contributor https://orcid.org/0000-0002-2061-091X -creation_date: 2010-03-10T03:18:15Z - [Term] id: PATO:0002198 name: quality of a substance @@ -149889,12 +149274,21 @@ creation_date: 2014-12-12T08:43:17Z id: PATO:0010006 name: cell morphology namespace: quality -def: "A quality of a single cell inhering in the bearer by virtue of the bearer's size or shape or structure." [ORCID:0000-0002-7073-9172] +def: "A quality of a single cell inhering in the bearer by virtue of the bearer's size or shape or structure." [https://orcid.org/0000-0002-7073-9172] comment: Use this term for morphologies that can *only* inhere in a cell, e.g. morphological qualities inhering in a cell by virtue of the presence, location or shape of one or more cell parts. is_a: PATO:0000051 ! morphology relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 creation_date: 2021-01-23T11:31:53Z +[Term] +id: PATO:0010007 +name: multiciliated +namespace: quality +def: "A cellular quality inhering in a bearer by virtue of the bearer's having multiple cilia." [PMID:36924208] +is_a: PATO:0001408 ! ciliated +relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 +property_value: dcterms-date "2024-07-23T10:43:20Z" xsd:dateTime + [Term] id: PATO:0015006 name: polymeric @@ -150024,12 +149418,20 @@ def: "A quality of a substance on which or through which electromagnetic radiati subset: attribute_slim is_a: PATO:0002198 ! quality of a substance +[Term] +id: PATO:0103000 +name: quantitative +namespace: quality +def: "A quality of an entity that can be represented numerically, including anything that can be counted, measured, or given a numerical value." [https://libguides.macalester.edu/c.php?g=527786&p=3608639, https://www.nnlm.gov/guides/data-glossary/quantitative-data] +is_a: PATO:0000001 ! quality +created_by: https://orcid.org/0000-0001-8314-2140 + [Term] id: PR:000000001 name: protein namespace: protein def: "An amino acid chain that is produced de novo by ribosome-mediated translation of a genetically-encoded mRNA, and any derivatives thereof." [PRO:DAN, PRO:WCB] -comment: The definition above excludes protein complexes, which some also consider a protein. Those who wish to refer to a class representing both senses of the word are directed to CHEBI:36080. Note that the definition allows for experimentally-manipulated genes, and allows for artifically-produced derivatives that mimic those found naturally. Proteins (in the sense defined here) that descended from a common ancestor can be classified into families and superfamilies composed of products of evolutionarily-related genes. The domain architecture of a protein is described by the order of its constituent domains. Proteins with the same domains in the same order are defined as homeomorphic [PRO:WCB]. +comment: The definition above excludes protein complexes, which some also consider a protein. Those who wish to refer to a class representing both senses of the word are directed to CHEBI:36080. Note that the definition allows for experimentally-manipulated genes, and allows for artifically-produced derivatives that mimic those found naturally. Proteins (in the sense defined here) that descended from a common ancestor can be classified into families and superfamilies composed of products of evolutionarily-related genes. The domain architecture of a protein is described by the order of its constituent domains. Proteins with the same domains in the same order are defined as homeomorphic [PRO:WCB). synonym: "native protein" NARROW [IEDB:BP] synonym: "natural protein" EXACT [PRO:DAN] is_a: PR:000018263 ! amino acid chain @@ -151311,7 +150713,7 @@ synonym: "mLy76" EXACT PRO-short-label [PRO:DNx] synonym: "ter-119" EXACT [] synonym: "ter119" EXACT [] is_a: PR:000029032 ! Mus musculus protein -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:000003457 @@ -151829,8 +151231,8 @@ synonym: "mCALCA" EXACT PRO-short-label [PRO:DNx] is_a: PR:000027222 ! CALCA gene translation product is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000027222 ! CALCA gene translation product -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:000028527 @@ -151849,8 +151251,8 @@ def: "A protein that is encoded in the genome of Mus musculus." [PRO:DAN] synonym: "mouse protein" EXACT PRO-short-label [PRO:DAN] is_a: PR:000036194 ! eukaryotic protein intersection_of: PR:000000001 ! protein -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:000029063 @@ -151860,8 +151262,8 @@ def: "A protein that is encoded in the genome of Gallus gallus." [PRO:DAN] synonym: "chicken protein" EXACT PRO-short-label [PRO:DAN] is_a: PR:000036194 ! eukaryotic protein intersection_of: PR:000000001 ! protein -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:000029067 @@ -151871,8 +151273,8 @@ def: "A protein that is encoded in the genome of Homo sapiens." [PRO:DAN] synonym: "human protein" EXACT PRO-short-label [PRO:DAN] is_a: PR:000036194 ! eukaryotic protein intersection_of: PR:000000001 ! protein -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:000029968 @@ -151897,8 +151299,8 @@ synonym: "hCALCA" EXACT PRO-short-label [PRO:DNx] is_a: PR:000027222 ! CALCA gene translation product is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000027222 ! CALCA gene translation product -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:000030035 @@ -151924,8 +151326,8 @@ def: "A protein that is encoded in the genome of some Eukaryota." [PRO:DAN] synonym: "Eukaryota protein" EXACT [PRO:DAN] is_a: PR:000000001 ! protein intersection_of: PR:000000001 ! protein -intersection_of: only_in_taxon NCBITaxon:2759 ! Eukaryota -relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota +intersection_of: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota +relationship: RO:0002160 NCBITaxon:2759 ! only in taxon Eukaryota [Term] id: PR:000036870 @@ -151937,9 +151339,8 @@ synonym: "chick-CALCA" EXACT PRO-short-label [PRO:DNx] is_a: PR:000027222 ! CALCA gene translation product is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000027222 ! CALCA gene translation product -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://birdgenenames.org/cgnc/GeneReport?id=49721 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:000040662 @@ -151950,7 +151351,7 @@ comment: Category=family. synonym: "cathepsin" NARROW [PRO:DAN] synonym: "fam:CTS" EXACT PRO-short-label [PRO:DNx] is_a: PR:000036194 ! eukaryotic protein -relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: RO:0002160 NCBITaxon:33208 ! only in taxon Metazoa [Term] id: PR:000045358 @@ -151980,6 +151381,15 @@ synonym: "CD45R" EXACT [] synonym: "PTPRC/iso:CD45R" EXACT PRO-short-label [PRO:DNx] is_a: PR:000001006 ! receptor-type tyrosine-protein phosphatase C +[Term] +id: PR:000050567 +name: obsolete protein-containing material entity +namespace: protein +def: "OBSOLETE. A material entity that minimally consists of a protein." [PRO:DAN] +comment: Note: Made obsolete since the term definition was much broader than intended. Originally meant to include only single proteins (and derivatives thereof; PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050566), it instead also included cells defined as having certain protein attachments. +is_obsolete: true +consider: PR:000064867 + [Term] id: PR:000064867 name: protein-containing molecular entity @@ -152006,9 +151416,8 @@ xref: UniProtKB:A1EA95 is_a: PR:000001869 ! interleukin-7 receptor subunit alpha is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000001869 ! interleukin-7 receptor subunit alpha -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://birdgenenames.org/cgnc/GeneReport?id=10067 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:A2VEC9 @@ -152025,8 +151434,8 @@ xref: UniProtKB:A2VEC9 is_a: PR:000015658 ! SCO-spondin is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000015658 ! SCO-spondin -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:B0BL87 @@ -152039,9 +151448,8 @@ xref: UniProtKB:B0BL87 is_a: PR:000001889 ! CD14 molecule is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000001889 ! CD14 molecule -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://birdgenenames.org/cgnc/GeneReport?id=14621 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:E1C261 @@ -152055,8 +151463,8 @@ xref: UniProtKB:E1C261 is_a: PR:000001867 ! interleukin-5 receptor subunit alpha is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000001867 ! interleukin-5 receptor subunit alpha -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:E1C9E2 @@ -152065,12 +151473,13 @@ namespace: protein def: "A prominin-1 that is encoded in the genome of chicken." [OMA:E1C9E2, PRO:CNA] comment: Category=organism-gene. synonym: "chick-PROM1" EXACT PRO-short-label [PRO:DNx] +synonym: "PROM1" RELATED Gene-based [PRO:DAN] xref: UniProtKB:E1C9E2 is_a: PR:000001786 ! prominin-1 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000001786 ! prominin-1 -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:F1NXT4 @@ -152083,9 +151492,8 @@ xref: UniProtKB:F1NXT4 is_a: PR:000001084 ! T-cell surface glycoprotein CD8 alpha chain is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000001084 ! T-cell surface glycoprotein CD8 alpha chain -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://birdgenenames.org/cgnc/GeneReport?id=49868 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:O08710 @@ -152100,8 +151508,8 @@ xref: UniProtKB:O08710 is_a: PR:000016283 ! thyroglobulin is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000016283 ! thyroglobulin -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:O09100 @@ -152116,8 +151524,8 @@ xref: UniProtKB:O09100 is_a: PR:000007858 ! endothelial transcription factor GATA-2 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000007858 ! endothelial transcription factor GATA-2 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:O15353 @@ -152134,8 +151542,8 @@ xref: UniProtKB:O15353 is_a: PR:000007636 ! forkhead box protein N1 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000007636 ! forkhead box protein N1 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:O35305 @@ -152154,8 +151562,8 @@ xref: UniProtKB:O35305 is_a: PR:000001954 ! tumor necrosis factor receptor superfamily member 11A is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001954 ! tumor necrosis factor receptor superfamily member 11A -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:O43490 @@ -152174,8 +151582,8 @@ xref: UniProtKB:O43490 is_a: PR:000001786 ! prominin-1 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001786 ! prominin-1 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:O54990 @@ -152194,8 +151602,8 @@ xref: UniProtKB:O54990 is_a: PR:000001786 ! prominin-1 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001786 ! prominin-1 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:O89103 @@ -152221,8 +151629,8 @@ xref: UniProtKB:O89103 is_a: PR:000002037 ! complement component C1q receptor is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000002037 ! complement component C1q receptor -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P00797 @@ -152237,8 +151645,8 @@ xref: UniProtKB:P00797 is_a: PR:000013883 ! renin is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000013883 ! renin -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P01100 @@ -152259,8 +151667,8 @@ xref: UniProtKB:P01100 is_a: PR:000007597 ! protein c-Fos is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000007597 ! protein c-Fos -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P01101 @@ -152277,8 +151685,8 @@ xref: UniProtKB:P01101 is_a: PR:000007597 ! protein c-Fos is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000007597 ! protein c-Fos -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P01236 @@ -152292,8 +151700,8 @@ xref: UniProtKB:P01236 is_a: PR:000013246 ! prolactin is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000013246 ! prolactin -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P01266 @@ -152308,8 +151716,8 @@ xref: UniProtKB:P01266 is_a: PR:000016283 ! thyroglobulin is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000016283 ! thyroglobulin -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P01308 @@ -152322,8 +151730,8 @@ xref: UniProtKB:P01308 is_a: PR:000009054 ! insulin gene translation product is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000009054 ! insulin gene translation product -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P01589 @@ -152344,8 +151752,8 @@ xref: UniProtKB:P01589 is_a: PR:000001380 ! interleukin-2 receptor subunit alpha is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001380 ! interleukin-2 receptor subunit alpha -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P01590 @@ -152366,8 +151774,8 @@ xref: UniProtKB:P01590 is_a: PR:000001380 ! interleukin-2 receptor subunit alpha is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001380 ! interleukin-2 receptor subunit alpha -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P01730 @@ -152382,8 +151790,8 @@ xref: UniProtKB:P01730 is_a: PR:000001004 ! CD4 molecule is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001004 ! CD4 molecule -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P01731 @@ -152401,8 +151809,8 @@ xref: UniProtKB:P01731 is_a: PR:000001084 ! T-cell surface glycoprotein CD8 alpha chain is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001084 ! T-cell surface glycoprotein CD8 alpha chain -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P01732 @@ -152419,8 +151827,8 @@ xref: UniProtKB:P01732 is_a: PR:000001084 ! T-cell surface glycoprotein CD8 alpha chain is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001084 ! T-cell surface glycoprotein CD8 alpha chain -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P01831 @@ -152437,8 +151845,8 @@ xref: UniProtKB:P01831 is_a: PR:000001843 ! Thy-1 membrane glycoprotein is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001843 ! Thy-1 membrane glycoprotein -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P02686 @@ -152455,8 +151863,8 @@ xref: UniProtKB:P02686 is_a: PR:000010228 ! myelin basic protein is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000010228 ! myelin basic protein -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P02724 @@ -152475,8 +151883,8 @@ xref: UniProtKB:P02724 is_a: PR:000001460 ! glycophorin-A is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001460 ! glycophorin-A -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P02786 @@ -152502,8 +151910,8 @@ xref: UniProtKB:P02786 is_a: PR:000001945 ! transferrin receptor protein 1 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001945 ! transferrin receptor protein 1 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P02788 @@ -152522,8 +151930,8 @@ xref: UniProtKB:P02788 is_a: PR:000009978 ! lactotransferrin is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000009978 ! lactotransferrin -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P03995 @@ -152538,8 +151946,8 @@ xref: UniProtKB:P03995 is_a: PR:000007939 ! glial fibrillary acidic protein is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000007939 ! glial fibrillary acidic protein -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P04053 @@ -152557,8 +151965,8 @@ xref: UniProtKB:P04053 is_a: PR:000006611 ! DNA nucleotidylexotransferase is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000006611 ! DNA nucleotidylexotransferase -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P04216 @@ -152575,8 +151983,8 @@ xref: UniProtKB:P04216 is_a: PR:000001843 ! Thy-1 membrane glycoprotein is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001843 ! Thy-1 membrane glycoprotein -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P04370 @@ -152593,8 +152001,8 @@ xref: UniProtKB:P04370 is_a: PR:000010228 ! myelin basic protein is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000010228 ! myelin basic protein -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P05532 @@ -152613,8 +152021,8 @@ xref: UniProtKB:P05532 is_a: PR:000002065 ! mast/stem cell growth factor receptor is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000002065 ! mast/stem cell growth factor receptor -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P05533 @@ -152634,8 +152042,8 @@ xref: UniProtKB:P05533 is_a: PR:000002979 ! lymphocyte antigen 6A-2/6E-1 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000002979 ! lymphocyte antigen 6A-2/6E-1 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P05555 @@ -152654,8 +152062,8 @@ xref: UniProtKB:P05555 is_a: PR:000001012 ! integrin alpha-M is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001012 ! integrin alpha-M -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P06127 @@ -152671,8 +152079,8 @@ xref: UniProtKB:P06127 is_a: PR:000001839 ! T-cell surface glycoprotein CD5 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001839 ! T-cell surface glycoprotein CD5 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P06332 @@ -152689,8 +152097,8 @@ xref: UniProtKB:P06332 is_a: PR:000001004 ! CD4 molecule is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001004 ! CD4 molecule -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P06729 @@ -152710,8 +152118,8 @@ xref: UniProtKB:P06729 is_a: PR:000001083 ! CD2 molecule is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001083 ! CD2 molecule -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P06734 @@ -152736,8 +152144,8 @@ xref: UniProtKB:P06734 is_a: PR:000001880 ! low affinity immunoglobulin epsilon Fc receptor is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001880 ! low affinity immunoglobulin epsilon Fc receptor -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P06800 @@ -152757,8 +152165,8 @@ xref: UniProtKB:P06800 is_a: PR:000001006 ! receptor-type tyrosine-protein phosphatase C is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001006 ! receptor-type tyrosine-protein phosphatase C -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P06879 @@ -152773,8 +152181,8 @@ xref: UniProtKB:P06879 is_a: PR:000013246 ! prolactin is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000013246 ! prolactin -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P07333 @@ -152796,8 +152204,8 @@ xref: UniProtKB:P07333 is_a: PR:000002062 ! macrophage colony-stimulating factor 1 receptor is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000002062 ! macrophage colony-stimulating factor 1 receptor -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P07766 @@ -152814,8 +152222,8 @@ xref: UniProtKB:P07766 is_a: PR:000001020 ! CD3 epsilon is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001020 ! CD3 epsilon -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P08071 @@ -152830,8 +152238,8 @@ xref: UniProtKB:P08071 is_a: PR:000009978 ! lactotransferrin is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000009978 ! lactotransferrin -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P08101 @@ -152854,8 +152262,8 @@ xref: UniProtKB:P08101 is_a: PR:000001479 ! low affinity immunoglobulin gamma Fc region receptor II is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001479 ! low affinity immunoglobulin gamma Fc region receptor II -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P08473 @@ -152880,8 +152288,8 @@ xref: UniProtKB:P08473 is_a: PR:000001898 ! neprilysin is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001898 ! neprilysin -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P08508 @@ -152899,8 +152307,8 @@ xref: UniProtKB:P08508 is_a: PR:000001483 ! low affinity immunoglobulin gamma Fc region receptor III is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001483 ! low affinity immunoglobulin gamma Fc region receptor III -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P08514 @@ -152920,8 +152328,8 @@ xref: UniProtKB:P08514 is_a: PR:000009127 ! integrin alpha-IIb is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000009127 ! integrin alpha-IIb -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P08571 @@ -152936,8 +152344,8 @@ xref: UniProtKB:P08571 is_a: PR:000001889 ! CD14 molecule is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001889 ! CD14 molecule -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P08575 @@ -152955,8 +152363,8 @@ xref: UniProtKB:P08575 is_a: PR:000001006 ! receptor-type tyrosine-protein phosphatase C is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001006 ! receptor-type tyrosine-protein phosphatase C -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P08575-3 @@ -152969,8 +152377,8 @@ xref: UniProtKB:P08575-3 is_a: PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC is_a: PR:P08575 ! receptor-type tyrosine-protein phosphatase C (human) intersection_of: PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P08575-8 @@ -152984,8 +152392,8 @@ xref: UniProtKB:P08575-8 is_a: PR:000001015 ! receptor-type tyrosine-protein phosphatase C isoform CD45RA is_a: PR:P08575 ! receptor-type tyrosine-protein phosphatase C (human) intersection_of: PR:000001015 ! receptor-type tyrosine-protein phosphatase C isoform CD45RA -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P08920 @@ -153005,8 +152413,8 @@ xref: UniProtKB:P08920 is_a: PR:000001083 ! CD2 molecule is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001083 ! CD2 molecule -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P09326 @@ -153029,8 +152437,8 @@ xref: UniProtKB:P09326 is_a: PR:000001308 ! CD48 molecule is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001308 ! CD48 molecule -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P09564 @@ -153048,8 +152456,8 @@ xref: UniProtKB:P09564 is_a: PR:000001836 ! CD7 molecule is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001836 ! CD7 molecule -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P09581 @@ -153071,8 +152479,8 @@ xref: UniProtKB:P09581 is_a: PR:000002062 ! macrophage colony-stimulating factor 1 receptor is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000002062 ! macrophage colony-stimulating factor 1 receptor -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P09838 @@ -153091,8 +152499,8 @@ xref: UniProtKB:P09838 is_a: PR:000006611 ! DNA nucleotidylexotransferase is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000006611 ! DNA nucleotidylexotransferase -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P0CW03 @@ -153108,8 +152516,8 @@ xref: UniProtKB:P0CW03 is_a: PR:000002980 ! lymphocyte antigen 6C2 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000002980 ! lymphocyte antigen 6C2 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P10721 @@ -153132,8 +152540,8 @@ xref: UniProtKB:P10721 is_a: PR:000002065 ! mast/stem cell growth factor receptor is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000002065 ! mast/stem cell growth factor receptor -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P10810 @@ -153149,8 +152557,8 @@ xref: UniProtKB:P10810 is_a: PR:000001889 ! CD14 molecule is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001889 ! CD14 molecule -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P11215 @@ -153171,8 +152579,8 @@ xref: UniProtKB:P11215 is_a: PR:000001012 ! integrin alpha-M is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001012 ! integrin alpha-M -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P11836 @@ -153191,8 +152599,8 @@ xref: UniProtKB:P11836 is_a: PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P11939 @@ -153208,9 +152616,8 @@ xref: UniProtKB:P11939 is_a: PR:000007597 ! protein c-Fos is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000007597 ! protein c-Fos -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://birdgenenames.org/cgnc/GeneReport?id=49845 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:P12018 @@ -153230,8 +152637,8 @@ xref: UniProtKB:P12018 is_a: PR:000001858 ! immunoglobulin iota chain is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001858 ! immunoglobulin iota chain -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P13379 @@ -153249,8 +152656,8 @@ xref: UniProtKB:P13379 is_a: PR:000001839 ! T-cell surface glycoprotein CD5 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001839 ! T-cell surface glycoprotein CD5 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P13590 @@ -153266,8 +152673,8 @@ xref: UniProtKB:P13590 is_a: PR:000001024 ! neural cell adhesion molecule 1 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000001024 ! neural cell adhesion molecule 1 -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:P13591 @@ -153285,8 +152692,8 @@ xref: UniProtKB:P13591 is_a: PR:000001024 ! neural cell adhesion molecule 1 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001024 ! neural cell adhesion molecule 1 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P13595 @@ -153304,8 +152711,8 @@ xref: UniProtKB:P13595 is_a: PR:000001024 ! neural cell adhesion molecule 1 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001024 ! neural cell adhesion molecule 1 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P13686 @@ -153323,8 +152730,8 @@ xref: UniProtKB:P13686 is_a: PR:000001937 ! tartrate-resistant acid phosphatase type 5 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001937 ! tartrate-resistant acid phosphatase type 5 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P14136 @@ -153340,8 +152747,8 @@ xref: UniProtKB:P14136 is_a: PR:000007939 ! glial fibrillary acidic protein is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000007939 ! glial fibrillary acidic protein -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P14676 @@ -153355,9 +152762,8 @@ xref: UniProtKB:P14676 is_a: PR:000013246 ! prolactin is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000013246 ! prolactin -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/396453 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:P14784 @@ -153380,8 +152786,8 @@ xref: UniProtKB:P14784 is_a: PR:000001381 ! interleukin-2 receptor subunit beta is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001381 ! interleukin-2 receptor subunit beta -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P15379 @@ -153408,8 +152814,8 @@ xref: UniProtKB:P15379 is_a: PR:000001307 ! CD44 molecule is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001307 ! CD44 molecule -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P15391 @@ -153426,8 +152832,8 @@ xref: UniProtKB:P15391 is_a: PR:000001002 ! CD19 molecule is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001002 ! CD19 molecule -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P15702 @@ -153447,8 +152853,8 @@ xref: UniProtKB:P15702 is_a: PR:000001879 ! leukosialin is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001879 ! leukosialin -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P15720 @@ -153462,9 +152868,8 @@ xref: UniProtKB:P15720 is_a: PR:000010228 ! myelin basic protein is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000010228 ! myelin basic protein -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/396217 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:P15814 @@ -153484,8 +152889,8 @@ xref: UniProtKB:P15814 is_a: PR:000001859 ! immunoglobulin lambda-like polypeptide 1 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001859 ! immunoglobulin lambda-like polypeptide 1 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P15918 @@ -153503,8 +152908,8 @@ xref: UniProtKB:P15918 is_a: PR:000003457 ! V(D)J recombination-activating protein 1 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000003457 ! V(D)J recombination-activating protein 1 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P15919 @@ -153519,8 +152924,8 @@ xref: UniProtKB:P15919 is_a: PR:000003457 ! V(D)J recombination-activating protein 1 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000003457 ! V(D)J recombination-activating protein 1 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P15976 @@ -153541,8 +152946,8 @@ xref: UniProtKB:P15976 is_a: PR:000007857 ! erythroid transcription factor is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000007857 ! erythroid transcription factor -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P16070 @@ -153573,8 +152978,8 @@ xref: UniProtKB:P16070 is_a: PR:000001307 ! CD44 molecule is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001307 ! CD44 molecule -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P16150 @@ -153594,8 +152999,8 @@ xref: UniProtKB:P16150 is_a: PR:000001879 ! leukosialin is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001879 ! leukosialin -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P16297 @@ -153615,8 +153020,8 @@ xref: UniProtKB:P16297 is_a: PR:000001381 ! interleukin-2 receptor subunit beta is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001381 ! interleukin-2 receptor subunit beta -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P16406 @@ -153635,8 +153040,8 @@ xref: UniProtKB:P16406 is_a: PR:000002039 ! glutamyl aminopeptidase is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000002039 ! glutamyl aminopeptidase -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P16871 @@ -153656,8 +153061,8 @@ xref: UniProtKB:P16871 is_a: PR:000001869 ! interleukin-7 receptor subunit alpha is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001869 ! interleukin-7 receptor subunit alpha -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P16872 @@ -153676,8 +153081,8 @@ xref: UniProtKB:P16872 is_a: PR:000001869 ! interleukin-7 receptor subunit alpha is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001869 ! interleukin-7 receptor subunit alpha -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P17433 @@ -153695,8 +153100,8 @@ xref: UniProtKB:P17433 is_a: PR:000001944 ! transcription factor PU.1 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001944 ! transcription factor PU.1 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P17542 @@ -153718,8 +153123,8 @@ xref: UniProtKB:P17542 is_a: PR:000016043 ! T-cell acute lymphocytic leukemia protein 1 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000016043 ! T-cell acute lymphocytic leukemia protein 1 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P17678 @@ -153739,9 +153144,8 @@ xref: UniProtKB:P17678 is_a: PR:000007857 ! erythroid transcription factor is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000007857 ! erythroid transcription factor -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://birdgenenames.org/cgnc/GeneReport?id=49811 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:P17679 @@ -153761,8 +153165,8 @@ xref: UniProtKB:P17679 is_a: PR:000007857 ! erythroid transcription factor is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000007857 ! erythroid transcription factor -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P17813 @@ -153778,8 +153182,8 @@ xref: UniProtKB:P17813 is_a: PR:000001345 ! endoglin is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001345 ! endoglin -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P17947 @@ -153795,8 +153199,8 @@ xref: UniProtKB:P17947 is_a: PR:000001944 ! transcription factor PU.1 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001944 ! transcription factor PU.1 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P18181 @@ -153820,8 +153224,8 @@ xref: UniProtKB:P18181 is_a: PR:000001308 ! CD48 molecule is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001308 ! CD48 molecule -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P18827 @@ -153838,8 +153242,8 @@ xref: UniProtKB:P18827 is_a: PR:000001935 ! syndecan-1 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001935 ! syndecan-1 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P18828 @@ -153857,8 +153261,8 @@ xref: UniProtKB:P18828 is_a: PR:000001935 ! syndecan-1 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001935 ! syndecan-1 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P19070 @@ -153874,8 +153278,8 @@ xref: UniProtKB:P19070 is_a: PR:000001338 ! complement receptor type 2 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001338 ! complement receptor type 2 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P19437 @@ -153896,8 +153300,8 @@ xref: UniProtKB:P19437 is_a: PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P20023 @@ -153917,8 +153321,8 @@ xref: UniProtKB:P20023 is_a: PR:000001338 ! complement receptor type 2 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001338 ! complement receptor type 2 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P20138 @@ -153936,8 +153340,8 @@ xref: UniProtKB:P20138 is_a: PR:000001892 ! CD33 molecule is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001892 ! CD33 molecule -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P20693 @@ -153955,8 +153359,8 @@ xref: UniProtKB:P20693 is_a: PR:000001880 ! low affinity immunoglobulin epsilon Fc receptor is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001880 ! low affinity immunoglobulin epsilon Fc receptor -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P20702 @@ -153975,8 +153379,8 @@ xref: UniProtKB:P20702 is_a: PR:000001013 ! integrin alpha-X is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001013 ! integrin alpha-X -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P21183 @@ -153996,8 +153400,8 @@ xref: UniProtKB:P21183 is_a: PR:000001867 ! interleukin-5 receptor subunit alpha is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001867 ! interleukin-5 receptor subunit alpha -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P21784 @@ -154013,8 +153417,8 @@ xref: UniProtKB:P21784 is_a: PR:000003460 ! V(D)J recombination-activating protein 2 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000003460 ! V(D)J recombination-activating protein 2 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P22091 @@ -154032,8 +153436,8 @@ xref: UniProtKB:P22091 is_a: PR:000016043 ! T-cell acute lymphocytic leukemia protein 1 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000016043 ! T-cell acute lymphocytic leukemia protein 1 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P22646 @@ -154049,8 +153453,8 @@ xref: UniProtKB:P22646 is_a: PR:000001020 ! CD3 epsilon is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001020 ! CD3 epsilon -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P23769 @@ -154066,8 +153470,8 @@ xref: UniProtKB:P23769 is_a: PR:000007858 ! endothelial transcription factor GATA-2 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000007858 ! endothelial transcription factor GATA-2 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P23824 @@ -154083,9 +153487,8 @@ xref: UniProtKB:P23824 is_a: PR:000007858 ! endothelial transcription factor GATA-2 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000007858 ! endothelial transcription factor GATA-2 -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/416018 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:P24271 @@ -154100,9 +153503,8 @@ xref: UniProtKB:P24271 is_a: PR:000003457 ! V(D)J recombination-activating protein 1 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000003457 ! V(D)J recombination-activating protein 1 -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://birdgenenames.org/cgnc/GeneReport?id=6004 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:P24807 @@ -154125,8 +153527,8 @@ xref: UniProtKB:P24807 is_a: PR:000001932 ! signal transducer CD24 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001932 ! signal transducer CD24 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P24899 @@ -154143,9 +153545,8 @@ xref: UniProtKB:P24899 is_a: PR:000016043 ! T-cell acute lymphocytic leukemia protein 1 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000016043 ! T-cell acute lymphocytic leukemia protein 1 -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://birdgenenames.org/cgnc/GeneReport?id=16227 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:P25063 @@ -154161,8 +153562,8 @@ xref: UniProtKB:P25063 is_a: PR:000001932 ! signal transducer CD24 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001932 ! signal transducer CD24 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P25918 @@ -154178,8 +153579,8 @@ xref: UniProtKB:P25918 is_a: PR:000001002 ! CD19 molecule is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001002 ! CD19 molecule -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P26842 @@ -154198,8 +153599,8 @@ xref: UniProtKB:P26842 is_a: PR:000001963 ! CD27 molecule is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001963 ! CD27 molecule -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P26951 @@ -154219,8 +153620,8 @@ xref: UniProtKB:P26951 is_a: PR:000001865 ! interleukin-3 receptor class 2 alpha chain is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001865 ! interleukin-3 receptor class 2 alpha chain -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P26952 @@ -154241,8 +153642,8 @@ xref: UniProtKB:P26952 is_a: PR:000001865 ! interleukin-3 receptor class 2 alpha chain is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001865 ! interleukin-3 receptor class 2 alpha chain -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P27814 @@ -154267,8 +153668,8 @@ xref: UniProtKB:P27814 is_a: PR:000002977 ! killer cell lectin-like receptor subfamily B member 1C is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000002977 ! killer cell lectin-like receptor subfamily B member 1C -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P28906 @@ -154282,8 +153683,8 @@ xref: UniProtKB:P28906 is_a: PR:000001003 ! CD34 molecule is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001003 ! CD34 molecule -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P28907 @@ -154306,8 +153707,8 @@ xref: UniProtKB:P28907 is_a: PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P31994 @@ -154330,8 +153731,8 @@ xref: UniProtKB:P31994 is_a: PR:000001481 ! low affinity immunoglobulin gamma Fc region receptor II-b is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001481 ! low affinity immunoglobulin gamma Fc region receptor II-b -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P31997 @@ -154350,8 +153751,8 @@ xref: UniProtKB:P31997 is_a: PR:000001332 ! carcinoembryonic antigen-related cell adhesion molecule 8 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001332 ! carcinoembryonic antigen-related cell adhesion molecule 8 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P33151 @@ -154369,8 +153770,8 @@ xref: UniProtKB:P33151 is_a: PR:000001444 ! cadherin-5 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001444 ! cadherin-5 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P35456 @@ -154387,8 +153788,8 @@ xref: UniProtKB:P35456 is_a: PR:000001969 ! urokinase plasminogen activator surface receptor is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001969 ! urokinase plasminogen activator surface receptor -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P35461 @@ -154404,8 +153805,8 @@ xref: UniProtKB:P35461 is_a: PR:000002978 ! lymphocyte antigen 6G is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000002978 ! lymphocyte antigen 6G -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P35918 @@ -154427,8 +153828,8 @@ xref: UniProtKB:P35918 is_a: PR:000002112 ! vascular endothelial growth factor receptor 2 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000002112 ! vascular endothelial growth factor receptor 2 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P35968 @@ -154451,8 +153852,8 @@ xref: UniProtKB:P35968 is_a: PR:000002112 ! vascular endothelial growth factor receptor 2 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000002112 ! vascular endothelial growth factor receptor 2 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P36195 @@ -154470,9 +153871,8 @@ xref: UniProtKB:P36195 is_a: PR:000006611 ! DNA nucleotidylexotransferase is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000006611 ! DNA nucleotidylexotransferase -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/396351 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:P36888 @@ -154497,8 +153897,8 @@ xref: UniProtKB:P36888 is_a: PR:000002001 ! receptor-type tyrosine-protein kinase FLT3 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000002001 ! receptor-type tyrosine-protein kinase FLT3 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P37237 @@ -154518,8 +153918,8 @@ xref: UniProtKB:P37237 is_a: PR:000007499 ! fibroblast growth factor 8 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000007499 ! fibroblast growth factor 8 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P41272 @@ -154538,8 +153938,8 @@ xref: UniProtKB:P41272 is_a: PR:000001963 ! CD27 molecule is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001963 ! CD27 molecule -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P41597 @@ -154562,8 +153962,8 @@ xref: UniProtKB:P41597 is_a: PR:000001199 ! C-C chemokine receptor type 2 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001199 ! C-C chemokine receptor type 2 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P43235 @@ -154582,8 +153982,8 @@ xref: UniProtKB:P43235 is_a: PR:000001850 ! cathepsin K is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001850 ! cathepsin K -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P49238 @@ -154608,8 +154008,8 @@ xref: UniProtKB:P49238 is_a: PR:000001206 ! CX3C chemokine receptor 1 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001206 ! CX3C chemokine receptor 1 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P49715 @@ -154626,8 +154026,8 @@ xref: UniProtKB:P49715 is_a: PR:000005307 ! CCAAT/enhancer-binding protein alpha is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000005307 ! CCAAT/enhancer-binding protein alpha -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P50283 @@ -154642,8 +154042,8 @@ xref: UniProtKB:P50283 is_a: PR:000001836 ! CD7 molecule is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001836 ! CD7 molecule -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P51683 @@ -154665,8 +154065,8 @@ xref: UniProtKB:P51683 is_a: PR:000001199 ! C-C chemokine receptor type 2 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001199 ! C-C chemokine receptor type 2 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P53566 @@ -154682,8 +154082,8 @@ xref: UniProtKB:P53566 is_a: PR:000005307 ! CCAAT/enhancer-binding protein alpha is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000005307 ! CCAAT/enhancer-binding protein alpha -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P55075 @@ -154702,8 +154102,8 @@ xref: UniProtKB:P55075 is_a: PR:000007499 ! fibroblast growth factor 8 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000007499 ! fibroblast growth factor 8 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P55097 @@ -154717,8 +154117,8 @@ xref: UniProtKB:P55097 is_a: PR:000001850 ! cathepsin K is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001850 ! cathepsin K -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P55284 @@ -154735,8 +154135,8 @@ xref: UniProtKB:P55284 is_a: PR:000001444 ! cadherin-5 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001444 ! cadherin-5 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P55895 @@ -154752,8 +154152,8 @@ xref: UniProtKB:P55895 is_a: PR:000003460 ! V(D)J recombination-activating protein 2 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000003460 ! V(D)J recombination-activating protein 2 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:P56528 @@ -154777,8 +154177,8 @@ xref: UniProtKB:P56528 is_a: PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:P67970 @@ -154792,9 +154192,8 @@ xref: UniProtKB:P67970 is_a: PR:000009054 ! insulin gene translation product is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000009054 ! insulin gene translation product -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://birdgenenames.org/cgnc/GeneReport?id=4941 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:P98150 @@ -154812,9 +154211,8 @@ xref: UniProtKB:P98150 is_a: PR:000011178 ! nuclear factor NF-kappa-B p100 subunit is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000011178 ! nuclear factor NF-kappa-B p100 subunit -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/386574 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:Q00342 @@ -154837,8 +154235,8 @@ xref: UniProtKB:Q00342 is_a: PR:000002001 ! receptor-type tyrosine-protein kinase FLT3 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000002001 ! receptor-type tyrosine-protein kinase FLT3 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q00653 @@ -154859,8 +154257,8 @@ xref: UniProtKB:Q00653 is_a: PR:000011178 ! nuclear factor NF-kappa-B p100 subunit is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000011178 ! nuclear factor NF-kappa-B p100 subunit -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:Q01344 @@ -154881,8 +154279,8 @@ xref: UniProtKB:Q01344 is_a: PR:000001867 ! interleukin-5 receptor subunit alpha is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001867 ! interleukin-5 receptor subunit alpha -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:Q02548 @@ -154899,8 +154297,8 @@ xref: UniProtKB:Q02548 is_a: PR:000001903 ! paired box protein PAX-5 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001903 ! paired box protein PAX-5 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:Q02650 @@ -154917,8 +154315,8 @@ xref: UniProtKB:Q02650 is_a: PR:000001903 ! paired box protein PAX-5 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001903 ! paired box protein PAX-5 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q03405 @@ -154937,8 +154335,8 @@ xref: UniProtKB:Q03405 is_a: PR:000001969 ! urokinase plasminogen activator surface receptor is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001969 ! urokinase plasminogen activator surface receptor -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:Q05117 @@ -154958,8 +154356,8 @@ xref: UniProtKB:Q05117 is_a: PR:000001937 ! tartrate-resistant acid phosphatase type 5 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001937 ! tartrate-resistant acid phosphatase type 5 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q07075 @@ -154979,8 +154377,8 @@ xref: UniProtKB:Q07075 is_a: PR:000002039 ! glutamyl aminopeptidase is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000002039 ! glutamyl aminopeptidase -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:Q07763 @@ -155003,8 +154401,8 @@ xref: UniProtKB:Q07763 is_a: PR:000001896 ! natural killer cell receptor 2B4 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001896 ! natural killer cell receptor 2B4 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q08156 @@ -155021,9 +154419,8 @@ xref: UniProtKB:Q08156 is_a: PR:000002065 ! mast/stem cell growth factor receptor is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000002065 ! mast/stem cell growth factor receptor -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/378783 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:Q13291 @@ -155042,8 +154439,8 @@ xref: UniProtKB:Q13291 is_a: PR:000001833 ! SLAM family member 1 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001833 ! SLAM family member 1 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:Q15465 @@ -155060,8 +154457,8 @@ xref: UniProtKB:Q15465 is_a: PR:000014841 ! sonic hedgehog protein is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000014841 ! sonic hedgehog protein -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:Q2VLH6 @@ -155077,8 +154474,8 @@ xref: UniProtKB:Q2VLH6 is_a: PR:000001925 ! scavenger receptor cysteine-rich type 1 protein M130 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001925 ! scavenger receptor cysteine-rich type 1 protein M130 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q61391 @@ -155100,8 +154497,8 @@ xref: UniProtKB:Q61391 is_a: PR:000001898 ! neprilysin is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001898 ! neprilysin -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q61575 @@ -155122,8 +154519,8 @@ xref: UniProtKB:Q61575 is_a: PR:000007636 ! forkhead box protein N1 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000007636 ! forkhead box protein N1 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q62226 @@ -155142,8 +154539,8 @@ xref: UniProtKB:Q62226 is_a: PR:000014841 ! sonic hedgehog protein is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000014841 ! sonic hedgehog protein -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q62351 @@ -155162,8 +154559,8 @@ xref: UniProtKB:Q62351 is_a: PR:000001945 ! transferrin receptor protein 1 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001945 ! transferrin receptor protein 1 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q63961 @@ -155180,8 +154577,8 @@ xref: UniProtKB:Q63961 is_a: PR:000001345 ! endoglin is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001345 ! endoglin -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q63994 @@ -155199,8 +154596,8 @@ xref: UniProtKB:Q63994 is_a: PR:000001892 ! CD33 molecule is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001892 ! CD33 molecule -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q64314 @@ -155215,8 +154612,8 @@ xref: UniProtKB:Q64314 is_a: PR:000001003 ! CD34 molecule is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001003 ! CD34 molecule -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q67BJ4 @@ -155236,8 +154633,8 @@ xref: UniProtKB:Q67BJ4 is_a: PR:000003516 ! lactosylceramide 4-alpha-galactosyltransferase is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000003516 ! lactosylceramide 4-alpha-galactosyltransferase -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q86VB7 @@ -155253,8 +154650,8 @@ xref: UniProtKB:Q86VB7 is_a: PR:000001925 ! scavenger receptor cysteine-rich type 1 protein M130 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001925 ! scavenger receptor cysteine-rich type 1 protein M130 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:Q8AYD0 @@ -155270,9 +154667,8 @@ xref: UniProtKB:Q8AYD0 is_a: PR:000001444 ! cadherin-5 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000001444 ! cadherin-5 -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/374068 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:Q8CG65 @@ -155286,8 +154682,8 @@ xref: UniProtKB:Q8CG65 is_a: PR:000015658 ! SCO-spondin is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000015658 ! SCO-spondin -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q8VBX4 @@ -155304,8 +154700,8 @@ xref: UniProtKB:Q8VBX4 is_a: PR:000001293 ! C-type lectin domain family 4 member K is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001293 ! C-type lectin domain family 4 member K -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q8VCC9 @@ -155320,8 +154716,8 @@ xref: UniProtKB:Q8VCC9 is_a: PR:000015557 ! spondin-1 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000015557 ! spondin-1 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q90722 @@ -155338,9 +154734,8 @@ xref: UniProtKB:Q90722 is_a: PR:000007499 ! fibroblast growth factor 8 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000007499 ! fibroblast growth factor 8 -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/396313 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:Q90997 @@ -155358,9 +154753,8 @@ xref: UniProtKB:Q90997 is_a: PR:000001945 ! transferrin receptor protein 1 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000001945 ! transferrin receptor protein 1 -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/396191 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:Q91035 @@ -155376,9 +154770,8 @@ xref: UniProtKB:Q91035 is_a: PR:000014841 ! sonic hedgehog protein is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000014841 ! sonic hedgehog protein -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/395615 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:Q9BZW8 @@ -155401,8 +154794,8 @@ xref: UniProtKB:Q9BZW8 is_a: PR:000001896 ! natural killer cell receptor 2B4 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001896 ! natural killer cell receptor 2B4 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:Q9HCB6 @@ -155420,8 +154813,8 @@ xref: UniProtKB:Q9HCB6 is_a: PR:000015557 ! spondin-1 is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000015557 ! spondin-1 -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:Q9NPC4 @@ -155445,8 +154838,8 @@ xref: UniProtKB:Q9NPC4 is_a: PR:000003516 ! lactosylceramide 4-alpha-galactosyltransferase is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000003516 ! lactosylceramide 4-alpha-galactosyltransferase -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:Q9NPY3 @@ -155469,8 +154862,8 @@ xref: UniProtKB:Q9NPY3 is_a: PR:000002037 ! complement component C1q receptor is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000002037 ! complement component C1q receptor -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:Q9QUM0 @@ -155488,8 +154881,8 @@ xref: UniProtKB:Q9QUM0 is_a: PR:000009127 ! integrin alpha-IIb is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000009127 ! integrin alpha-IIb -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q9QUM4 @@ -155506,8 +154899,8 @@ xref: UniProtKB:Q9QUM4 is_a: PR:000001833 ! SLAM family member 1 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001833 ! SLAM family member 1 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q9QXH4 @@ -155525,8 +154918,8 @@ xref: UniProtKB:Q9QXH4 is_a: PR:000001013 ! integrin alpha-X is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001013 ! integrin alpha-X -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q9UJ71 @@ -155545,8 +154938,8 @@ xref: UniProtKB:Q9UJ71 is_a: PR:000001293 ! C-type lectin domain family 4 member K is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001293 ! C-type lectin domain family 4 member K -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:Q9W601 @@ -155559,9 +154952,8 @@ xref: UniProtKB:Q9W601 is_a: PR:000001903 ! paired box protein PAX-5 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000001903 ! paired box protein PAX-5 -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://birdgenenames.org/cgnc/GeneReport?id=49160 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:Q9W770 @@ -155576,9 +154968,8 @@ xref: UniProtKB:Q9W770 is_a: PR:000015557 ! spondin-1 is_a: PR:000029063 ! Gallus gallus protein intersection_of: PR:000015557 ! spondin-1 -intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus -relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/395657 -relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +intersection_of: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus +relationship: RO:0002160 NCBITaxon:9031 ! only in taxon Gallus gallus [Term] id: PR:Q9WTK5 @@ -155594,8 +154985,8 @@ xref: UniProtKB:Q9WTK5 is_a: PR:000011178 ! nuclear factor NF-kappa-B p100 subunit is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000011178 ! nuclear factor NF-kappa-B p100 subunit -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: PR:Q9Y6Q6 @@ -155614,8 +155005,8 @@ xref: UniProtKB:Q9Y6Q6 is_a: PR:000001954 ! tumor necrosis factor receptor superfamily member 11A is_a: PR:000029067 ! Homo sapiens protein intersection_of: PR:000001954 ! tumor necrosis factor receptor superfamily member 11A -intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +intersection_of: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens +relationship: RO:0002160 NCBITaxon:9606 ! only in taxon Homo sapiens [Term] id: PR:Q9Z0D9 @@ -155632,8 +155023,8 @@ xref: UniProtKB:Q9Z0D9 is_a: PR:000001206 ! CX3C chemokine receptor 1 is_a: PR:000029032 ! Mus musculus protein intersection_of: PR:000001206 ! CX3C chemokine receptor 1 -intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus -relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus +intersection_of: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus +relationship: RO:0002160 NCBITaxon:10090 ! only in taxon Mus musculus [Term] id: RO:0002577 @@ -155647,6 +155038,8 @@ id: UBERON:0000000 name: processual entity def: "An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity." [span:ProcessualEntity] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: upper_level xref: BFO:0000003 is_a: BFO:0000003 ! occurrent @@ -155661,6 +155054,8 @@ name: uterine cervix def: "Lower, narrow portion of the uterus where it joins with the top end of the vagina." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Cervix] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "canalis cervicis uteri" EXACT OMO:0003011 [FMA:17740, FMA:TA] @@ -155707,6 +155102,8 @@ property_value: homology_notes "The evolution of mammals is associated with radi id: UBERON:0000003 name: naris def: "Orifice of the olfactory system. The naris is the route by which odorants enter the olfactory system[MAH]." [http://orcid.org/0000-0001-9114-8737] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core xref: AAO:0000311 @@ -155736,7 +155133,9 @@ id: UBERON:0000004 name: nose def: "The olfactory organ of vertebrates, consisting of nares, olfactory epithelia and the structures and skeletal framework of the nasal cavity." [UBERON:cjm] subset: efo_slim +subset: human_subset subset: major_organ +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -155788,6 +155187,8 @@ property_value: taxon_notes "the structure of the nose varies across vertebrates id: UBERON:0000005 name: chemosensory organ subset: functional_classification +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "chemosensory sensory organ" EXACT [FBbt:00005157] xref: FBbt:00005157 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} @@ -155804,6 +155205,8 @@ name: islet of Langerhans def: "The clusters of hormone-producing cells that are scattered throughout the pancreas." [MA:0000127, MESH:A03.734.414, MP:0005215] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "island of Langerhans" RELATED [BTO:0000991] @@ -155850,6 +155253,8 @@ name: pituitary gland def: "The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [GO]. An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin [ZFIN]." [Wikipedia:Pituitary_gland, ZFIN:curator] comment: Terminology note: hypophysis and pituitary gland are often used informally as synonyms, but the hypophysis also includes the small infundibular or pituitary stalk[Neumann 2020] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -155915,6 +155320,8 @@ property_value: taxon_notes "The lamprey possesses a distinct pituitary organ an id: UBERON:0000009 name: submucosa def: "A layer of dense irregular connective tissue that lines organs and supports the mucosa, as well as joins the mucosa to the bulk of underlying smooth muscle. [WP,unvetted]." [Wikipedia:Submucosa] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "organ submucosa" EXACT [FMA:85391] @@ -155946,6 +155353,8 @@ def: "A major division of the nervous system that contains nerves which connect subset: cumbo subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -155994,6 +155403,8 @@ id: UBERON:0000011 name: parasympathetic nervous system def: "The parasympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system. Parasympathetic nerves emerge cranially as pre ganglionic fibers from oculomotor, facial, glossopharyngeal and vagus and from the sacral region of the spinal cord. Most neurons are cholinergic and responses are mediated by muscarinic receptors. The parasympathetic system innervates, for example: salivary glands, thoracic and abdominal viscera, bladder and genitalia[GO]." [GO:0048486] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -156037,6 +155448,8 @@ property_value: homology_notes "In mammals, the autonomic nervous system is divi id: UBERON:0000012 name: somatic nervous system def: "Part of peripheral nervous system that includes the somatic parts of the cranial and spinal nerves and their ganglia and the peripheral sensory receptors." [NLXANAT:100301] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "PNS - somatic" EXACT [] @@ -156059,6 +155472,8 @@ id: UBERON:0000013 name: sympathetic nervous system def: "The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [GO]." [GO:0048485] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -156100,6 +155515,8 @@ property_value: homology_notes "The autonomic nervous system is composed of thre id: UBERON:0000014 name: zone of skin def: "Any portion of the organ that covers that body and consists of a layer of epidermis and a layer of dermis." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Skin] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "portion of skin" EXACT [] synonym: "region of skin" EXACT [] @@ -156134,6 +155551,8 @@ name: non-material anatomical boundary def: "A non-material anatomical entity of two dimensions. Anatomical boundaries are contiguous structures." [CARO:0000010] comment: Except in the case of abstracted fiat boundaries such as the midline plane of an organism, all 2D anatomical entities have a 3 dimensional projection. For example, the surface of the shell of a muscle has a distinct shape that projects into the third dimension. Note that boundaries are 2D structures. They have no thickness - and so can not be sites of gene expression or gene product localisation. For this, use boundary region terms. subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "anatomical boundary" EXACT [CARO:0000010] xref: AEO:0000192 @@ -156150,6 +155569,8 @@ name: endocrine pancreas def: "The part of the pancreas that is part of the endocrine system and is made up of islet cells, which produce insulin, glucagon and somatostatin." [GO:GO, http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -156195,6 +155616,8 @@ id: UBERON:0000017 name: exocrine pancreas def: "The part of the pancreas that is part of the exocrine system and which produces and store zymogens of digestive enzymes, such as chymotrypsinogen and trypsinogen in the acinar cells [GO]." [GOC:GO, http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -156266,6 +155689,8 @@ property_value: taxon_notes "The term compound eye is sometimes used for the mul id: UBERON:0000019 name: camera-type eye def: "An organ of sight that includes the camera-type eyeball and supporting structures such as the lacrimal apparatus, the conjunctiva, the eyelid." [GO:0043010, https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -156311,6 +155736,8 @@ property_value: homology_notes "The eye of the adult lamprey is remarkably simil id: UBERON:0000020 name: sense organ def: "An organ that is capable of transducing sensory stimulus to the nervous system." [https://github.com/obophenotype/uberon/issues/549, https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "organ of sense organ system" EXACT [OBOL:accepted] synonym: "organ of sensory organ system" EXACT [OBOL:accepted] @@ -156351,6 +155778,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gr id: UBERON:0000021 name: cutaneous appendage def: "Anatomical projection that protrudes from the skin. Examples: hair, nail, feather, claw, hoof, horn, wattle, spur, beak, antler, bristle and some scales." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "epidermal appendage" NARROW [] synonym: "epidermal growth" RELATED [] @@ -156438,6 +155867,8 @@ relationship: has_quality PATO:0002236 ! aliform id: UBERON:0000025 name: tube def: "Any hollow cylindrical anatomical structure containing a lumen through which substances are transported." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "anatomical tube" EXACT [] synonym: "duct" NARROW [] xref: galen:Tube @@ -156454,6 +155885,8 @@ id: UBERON:0000026 name: appendage def: "Major subdivision of an organism that protrudes from the body[DOS, CARO]." [CARO:DOS] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "appendages" RELATED OMO:0003004 [XAO:0000218] @@ -156491,6 +155924,8 @@ name: lymph node def: "Any of the rounded masses of lymphoid tissue that are surrounded by a capsule of connective tissue, are distributed along the lymphatic vessels, and contain numerous lymphocytes which filter the flow of lymph." [BTO:0000784] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -156537,6 +155972,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/650" xsd: id: UBERON:0000030 name: lamina propria def: "A thin layer of loose connective tissue which lies beneath the epithelium and together with the epithelium constitutes the mucosa[WP]. The lamina propria contains capillaries and a central lacteal (lymph vessel) in the small intestine, as well as lymphoid tissue. Lamina propria also contains glands with the ducts opening on to the mucosal epithelium, that secrete mucus and serous secretions." [Wikipedia:Lamina_propria] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "lamina propria mucosa" EXACT [] synonym: "lamina propria mucosae" EXACT [] @@ -156557,6 +155994,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/f/fb/G id: UBERON:0000031 name: lamina propria of trachea def: "A lamina propria that is part of a respiratory airway." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lamina propria mucosa of trachea" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of windpipe" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of trachea" EXACT [OBOL:automatic] @@ -156591,6 +156030,8 @@ id: UBERON:0000033 name: head def: "The head is the anterior-most division of the body [GO]." [GO:0060322, Wikipedia:Head] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -156624,7 +156065,6 @@ xref: VHOG:0001644 xref: WBbt:0005739 xref: Wikipedia:Head xref: XAO:0003024 -xref: ZFA:0001114 is_a: UBERON:0011676 ! subdivision of organism along main body axis relationship: has_skeleton UBERON:0003129 {gci_relation="part_of", gci_filler="NCBITaxon:7776"} ! skull relationship: in_taxon NCBITaxon:33213 ! Bilateria @@ -156640,6 +156080,8 @@ id: UBERON:0000035 name: primary ovarian follicle def: "An ovarian follicle that has one layer of granulosa cells." [GO:0001545, GOC:mtg_mpo, http://ovary.stanford.edu] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "folliculus ovaricus primarius" EXACT OMO:0003011 [FMA:18634] synonym: "ovary primary follicle" EXACT [EMAPA:35631, MA:0002907] @@ -156665,6 +156107,8 @@ id: UBERON:0000036 name: secondary ovarian follicle def: "A maturing ovarian follicle that has two more more layers of granulosa cells, up to the onset of antrum formation." [GO:0001546, http://ovary.stanford.edu, http://www.repropedia.org/secondary-ovarian-follicle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "antral follicle of ovary" RELATED [FMA:18637] synonym: "folliculus ovaricus secondarius" EXACT [] @@ -156692,6 +156136,8 @@ property_value: editor_note "consider adopting distinction in MA" xsd:string id: UBERON:0000037 name: tertiary ovarian follicle def: "A follicle that has reached the most mature stage of folliculogenesis, characterized by the presence of the antrum." [http://orcid.org/0000-0002-6601-2165, http://www.repropedia.org/antral-follicle] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "antral follicle" BROAD [] @@ -156726,6 +156172,8 @@ id: UBERON:0000038 name: follicular fluid def: "The fluid surrounding the ovum and granulosa cells in the ovarian follicle." [ISBN:145114847X, MESH:D015571, Wikipedia:Follicular_fluid] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "antral fluid, ovarian follicle" RELATED [] synonym: "liquor follicularis" EXACT [FMA:18665] @@ -156760,6 +156208,8 @@ id: UBERON:0000039 name: follicular antrum def: "Region of ovarian follicle filled with follicular fluid." [Wikipedia:Follicular_antrum] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "antral cavity" EXACT [FMA:18675] synonym: "antrum folliculare" EXACT [FMA:18675] @@ -156818,6 +156268,8 @@ property_value: taxon_notes "Scales and teeth of sharks are examples of dermal s id: UBERON:0000042 name: serous membrane def: "Multi-tissue structure that is comprised of a secretory epithelial layer (mesothelium) and a connective tissue layer." [https://github.com/obophenotype/uberon/issues/86, Wikipedia:Serous_membrane] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "serosa" RELATED [Wikipedia:Serous_membrane] @@ -156850,6 +156302,8 @@ property_value: external_ontology_notes "in FMA, SM = mesothelium + connective t id: UBERON:0000043 name: tendon def: "Dense regular connective tissue that connects muscle to bone[VSAO]." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000073, Wikipedia:Tendon] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "sinew" RELATED [Wikipedia:Tendon] @@ -156892,6 +156346,8 @@ alt_id: UBERON:0026602 def: "Sensory ganglia located on the dorsal spinal roots within the vertebral column. The spinal ganglion cells are pseudounipolar. The single primary branch bifurcates sending a peripheral process to carry sensory information from the periphery and a central branch which relays that information to the spinal cord or brain. (MSH) * ganglion found on the posterior root of each spinal nerve, composed of the unipolar nerve cell bodies of the sensory neurons of the nerve. (CSP)." [BIRNLEX:2596] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -156954,6 +156410,8 @@ name: ganglion def: "A biological tissue mass, most commonly a mass of nerve cell bodies." [https://github.com/obophenotype/uberon/issues/300, Wikipedia:Ganglion] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -157020,6 +156478,8 @@ id: UBERON:0000047 name: simple eye def: "An eye with one concave chamber. Note that 'simple' does not imply a reduced level of complexity or acuity." [Wikipedia:Eye#Simple_eyes] subset: grouping_class +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: TGMA:0000729 xref: Wikipedia:Eye#Simple_eyes @@ -157040,6 +156500,8 @@ id: UBERON:0000049 name: spherical lensed eye def: "Simple eye that consists of a lens of one refractive index." [Wikipedia:Eye#Spherical_lensed_eye] subset: grouping_class +subset: human_subset +subset: mouse_subset is_a: UBERON:0000047 ! simple eye [Term] @@ -157057,6 +156519,8 @@ relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata id: UBERON:0000051 name: fornix of vagina def: "The deepest portions of the vagina, extending into the recesses created by the vaginal portion of cervix[WP,unvetted]." [Wikipedia:Vaginal_fornix] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "fornix" BROAD [] synonym: "fornix vaginae" EXACT OMO:0003011 [FMA:19985, FMA:TA] @@ -157077,6 +156541,8 @@ id: UBERON:0000052 name: fornix of brain def: "A C-shaped bundle of fibres (axons) in the brain, and carries signals from the hippocampus to the mammillary bodies and septal nuclei. It is typically divided into the columns (crus), body, commissure and the pre-commissural and post-commissural fornix (MM)." [BIRNLEX:705] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "brain fornix" EXACT [] @@ -157118,6 +156584,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0000053 name: macula lutea def: "An oval area in the retina, usually located temporal to the posterior pole of the eye and slightly below the level of the optic disk. It is characterized by the presence of a yellow pigment diffusely permeating the inner layers, contains the fovea centralis in its center, and provides the best phototopic visual acuity. It is devoid of retinal blood vessels, except in its periphery, and receives nourishment from the choriocapillaris of the choroid. (From Cline et al., Dictionary of Visual Science, 4th ed)." [MESH:A09.371.729.522] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "macula" RELATED [] @@ -157149,6 +156617,8 @@ id: UBERON:0000054 name: macula def: "Thickened areas of the saccule or utricle where the termination of the vestibular nerve occurs[MESH,modified]." [MESH:A09.246.631.909.625.125] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "acoustic macula" RELATED [MESH:A09.246.631.909.625.125] @@ -157176,6 +156646,8 @@ name: vessel def: "A tubular structure that contains, conveys body fluid, such as blood or lymph." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0004111 ! anatomical conduit relationship: channel_for UBERON:0006314 ! bodily fluid @@ -157187,7 +156659,9 @@ name: ureter def: "Muscular duct that propels urine from the kidneys to the urinary bladder, or related organs." [GO:0090189, Wikipedia:Ureter] subset: efo_slim subset: human_reference_atlas +subset: human_subset subset: major_organ +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -157239,7 +156713,9 @@ id: UBERON:0000057 name: urethra def: "The fibromuscular tubular canal through which urine is discharged from the bladder to the exterior via the external urinary meatus; in males, the urethra is joined by the ejaculatory ducts and serves as a passageway for semen during ejaculation, as well as a canal for urine during voiding; in females, the urethra is shorter and emerges above the vaginal opening." [MGI:anna, MP:0000537] subset: efo_slim +subset: human_subset subset: major_organ +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -157280,6 +156756,8 @@ id: UBERON:0000058 name: duct def: "A tubular structure that transports secreted or excreted substances." [http://orcid.org/0000-0002-6601-2165, http://www.siumed.edu/~dking2/intro/glands.htm#ducts] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "anatomical duct" EXACT [] synonym: "ducts" RELATED OMO:0003004 [XAO:0004000] synonym: "exocrine duct" NARROW [] @@ -157309,7 +156787,9 @@ name: large intestine def: "A subdivision of the digestive tract that connects the small intestine to the cloaca or anus. Lacks or has few villi[Kardong]." [ISBN:0073040584, Wikipedia:Large_intestine_(anatomy)] subset: efo_slim subset: human_reference_atlas +subset: human_subset subset: major_organ +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "intestinum crassum" RELATED [BTO:0000706] @@ -157347,6 +156827,8 @@ id: UBERON:0000060 name: anatomical wall alt_id: UBERON:0009915 def: "Organ component adjacent to an organ cavity and which consists of a maximal aggregate of organ component layers." [FMA:82482] +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "organ wall" RELATED [FMA:82482] synonym: "wall" BROAD [] @@ -157363,6 +156845,8 @@ id: UBERON:0000061 name: anatomical structure def: "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome." [CARO:0000003] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "biological structure" EXACT [] synonym: "connected biological structure" EXACT [CARO:0000003] @@ -157398,6 +156882,8 @@ id: UBERON:0000062 name: organ def: "Anatomical structure that performs a specific function or group of functions [WP]." [Wikipedia:Organ_(anatomy)] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "anatomical unit" RELATED [] synonym: "body organ" RELATED [] @@ -157419,7 +156905,7 @@ disjoint_from: UBERON:0002095 {source="PMID:28192867"} ! mesentery disjoint_from: UBERON:0034921 ! multi organ part structure relationship: capable_of GO:0008150 ! biological_process relationship: existence_starts_during_or_after UBERON:0000111 {gci_filler="NCBITaxon:6072", gci_relation="in_taxon"} ! organogenesis stage -relationship: has_2D_boundary UBERON:0006984 ! anatomical surface +relationship: has_boundary UBERON:0006984 ! anatomical surface relationship: never_in_taxon NCBITaxon:110815 {source="Wikipedia"} ! Xenoturbella relationship: part_of UBERON:0000467 ! anatomical system relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae @@ -157432,6 +156918,8 @@ property_value: external_ontology_notes "CARO v1 does not include a generic 'org id: UBERON:0000063 name: organ subunit def: "A part of an organ that constitutes a distinct modular sub-unit. In some cases, the organ may also contain other sub-units of identical or similar types, in other cases this may be a distinct entity." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "organ region with fixed fiat boundary" RELATED [FMA:86140] synonym: "organ segment" RELATED [FMA:86140] @@ -157448,6 +156936,8 @@ name: organ part def: "A multicellular structure that is a part of an organ." [http://orcid.org/0000-0002-6601-2165] subset: common_anatomy subset: efo_slim +subset: human_subset +subset: mouse_subset subset: non_informative subset: upper_level synonym: "cardinal organ part" EXACT [FMA:82472] @@ -157470,6 +156960,8 @@ id: UBERON:0000065 name: respiratory tract def: "Anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts." [https://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001606 xref: EHDAA:1568 xref: EHDAA:2219 @@ -157489,6 +156981,8 @@ id: UBERON:0000066 name: fully formed stage def: "The stage of development at which the animal is fully formed, including immaturity and maturity. Includes both sexually immature stage, and adult stage." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "adult stage" BROAD [] synonym: "fully formed animal stage" EXACT [] synonym: "juvenile-adult stage" EXACT [] @@ -157517,6 +157011,8 @@ is_obsolete: true id: UBERON:0000068 name: embryo stage def: "A life cycle stage that starts with fertilization and ends with the fully formed embryo." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "embryogenesis" RELATED [] synonym: "embryonic stage" EXACT [] xref: BilaDO:0000002 @@ -157621,6 +157117,8 @@ id: UBERON:0000071 name: death stage def: "End of the life of an organism." [XAO:0000437] subset: common_anatomy +subset: human_subset +subset: mouse_subset synonym: "death" RELATED [] xref: XAO:0000437 xref: XtroDO:0000085 @@ -157636,6 +157134,8 @@ property_value: external_ontology_notes "ncit:Death is an outcome" xsd:string {e id: UBERON:0000072 name: proximo-distal subdivision of respiratory tract def: "An section of a respiratory tract." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "respiratory tract" RELATED [MA:0000434] synonym: "subdivision of respiratory tract" RELATED [] @@ -157652,6 +157152,8 @@ property_value: external_ontology_notes "MA:0000434 has subclasses upper and low id: UBERON:0000073 name: regional part of nervous system def: "Any part or collection of parts of the central or peripheral nervous system. Parts may span both CNS and PNS." [BIRNLEX:1157] +subset: human_subset +subset: mouse_subset subset: non_informative subset: upper_level synonym: "part of nervous system" EXACT [BIRNLEX:1157] @@ -157673,6 +157175,8 @@ name: renal glomerulus def: "A capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the vertebrate kidney[GO]." [MP:0005325, Wikipedia:Glomerulus] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "glomerular capillary tuft" RELATED [ZFA:0001288] @@ -157716,6 +157220,8 @@ id: UBERON:0000075 name: subdivision of skeletal system alt_id: UBERON:0010322 def: "Anatomical cluster consisting of the skeletal elements and articular elements that are part of an individual subdivision of the organism." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "skeletal system part" RELATED [] synonym: "skeletal system subdivision" EXACT [FMA:85544] @@ -157733,6 +157239,8 @@ relationship: part_of UBERON:0001434 ! skeletal system id: UBERON:0000076 name: external ectoderm def: "The surface (external) layer of ectoderm which begins to proliferate shortly after separation from the neuroectoderm." [MGI:anna, MP:0012532] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "surface (external) ectoderm" EXACT [] synonym: "surface ectoderm" EXACT [MP:0012532] @@ -157763,6 +157271,8 @@ id: UBERON:0000077 name: mixed endoderm/mesoderm-derived structure def: "An anatomical structure that develops from the endoderm and the mesoderm." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000061 ! anatomical structure @@ -157777,6 +157287,8 @@ id: UBERON:0000078 name: mixed ectoderm/mesoderm/endoderm-derived structure def: "An anatomical structure that develops from the ectoderm, mesoderm and endoderm." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000061 ! anatomical structure @@ -157794,6 +157306,8 @@ name: male reproductive system def: "The organs associated with producing offspring in the gender that produces spermatozoa." [MP:0001145] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "genitalia of male organism" EXACT [OBOL:automatic] synonym: "male genital organ" RELATED [BTO:0000082] @@ -157841,6 +157355,8 @@ id: UBERON:0000080 name: mesonephros def: "The second stage of the kidney. It serves as the main excretory organ of aquatic vertebrates and as a temporary embryonic kidney in higher vertebrates. It is composed of the mesonephric duct (also called the Wolffian duct), mesonephric tubules, and associated capillary tufts. A single tubule and its associated capillary tuft is called a mesonephric excretory unit; these units are similar in structure and function to nephrons of the adult kidney. The mesonephros is derived from intermediate mesoderm in the vertebrate embryo." [GO:0001823, Wikipedia:Mesonephros] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: vertebrate_core @@ -157887,6 +157403,8 @@ property_value: taxon_notes "In mammals, the mesonephros is the second of the th id: UBERON:0000081 name: metanephros def: "In mammals, the metanephros is the excretory organ of the fetus, which develops into the mature kidney and is formed from the rear portion of the nephrogenic cord. The metanephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine[GO]." [GO:0001656, Wikipedia:Metanephros#Metanephros] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "definite kidney" RELATED [BTO:0001543] @@ -157923,6 +157441,8 @@ property_value: homology_notes "The ureteric diverticulum grows dorsally into th id: UBERON:0000082 name: adult mammalian kidney def: "A kidney at the most advanced stage of development in a mammal." [https://github.com/obophenotype/uberon/issues/1232, Wikipedia:Kidney_development] +subset: human_subset +subset: mouse_subset xref: BTO:0000671 xref: CALOHA:TS-0510 xref: FMA:7203 @@ -157942,6 +157462,8 @@ relationship: develops_from UBERON:0000081 ! metanephros id: UBERON:0000083 name: mesonephric tubule def: "A mesonephric tubule is an epithelial tube that is part of the mesonephros[GO]. Genital ridge that is next to the mesonephros[WP]." [Wikipedia:Mesonephric_tubules] +subset: human_subset +subset: mouse_subset synonym: "renal tubules" RELATED OMO:0003004 [VHOG:0000500] synonym: "tubuli mesonephrici" RELATED OMO:0003011 [Wikipedia:Mesonephric_tubules] xref: AAO:0010389 @@ -157964,6 +157486,8 @@ property_value: homology_notes "As the pronephros regresses, the archinephric du id: UBERON:0000084 name: ureteric bud def: "An epithelial swelling on the Wolffian duct that elongates to invade the adjacent metanephric mesenchyme[MP]." [MP:0010979, PMID:19828308] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "diverticulum" RELATED [BTO:0001646] synonym: "diverticulum metanephricum" RELATED OMO:0003011 [Wikipedia:Ureteric_bud] @@ -157996,6 +157520,8 @@ property_value: homology_notes "The first embryonic hint of a metanephros is the id: UBERON:0000085 name: morula def: "A spherical embryonic mass of blastomeres formed before the blastula and resulting from cleavage of the fertilized ovum." [MP:0012130] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "morula (2-16 cells)" RELATED [EHDAA2:0000005] xref: BTO:0001508 @@ -158021,6 +157547,8 @@ id: UBERON:0000086 name: zona pellucida def: "A glycoprotein membrane surrounding the plasma membrane of an oocyte. It is a vital constitutive part of the latter, external but not extraneous to it. The zona pellucida first appears in multilaminar primary oocytes." [Wikipedia:Zona_pellucida] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "oolemma" RELATED [BTO:0003135] @@ -158060,6 +157588,8 @@ name: inner cell mass def: "A mass of cells that develop into the body of the embryo and some extraembryonic tissues." [ISBN:0-683-40008-8, MGI:pvb] subset: early_development subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "early embryoblast" RELATED [FMA:86557] synonym: "embryoblast" RELATED [] @@ -158092,6 +157622,8 @@ name: trophoblast def: "The mesectodermal cell layer arising from the trophectoderm that erodes the uterine mucosa and contributes to the formation of the placenta." [ISBN:0-683-40008-8, MP:0005031] comment: Aggregate of cells forming the outer layer of a blastocyst, which provide nutrients to the embryo and develop into a large part of the placenta. They are formed during the first stage of pregnancy and are the first cells to differentiate from the fertilized egg. [Wikipedia:Trophoblast] subset: early_development +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "massa cellularis externa" RELATED OMO:0003011 [Wikipedia:Trophoblast] synonym: "trophoblast layer" EXACT [MP:0005031] @@ -158123,6 +157655,8 @@ def: "Missing definition for term UBERON:0000089. Please replace it using linked subset: early_development subset: efo_slim subset: grouping_class +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "endomesoderm" RELATED [ISBN:0073040584, VHOG:0001222] @@ -158161,6 +157695,8 @@ id: UBERON:0000090 name: blastocele def: "Fluid-filled central region of a blastocyst." [Wikipedia:Blastocele] subset: early_development +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "blastocelic cavity" RELATED [EMAPA:16044] synonym: "blastocoel" RELATED [VHOG:0000811] @@ -158192,6 +157728,8 @@ id: UBERON:0000091 name: bilaminar disc def: "A flattened, almost circular bilaminar plate of cells formed when the inner cell mass (aka embryoblast) forms two epithelial layers, each of a distinct lineage, separated by an extracellular basement membrane: the external (dorsal) layer is called the epiblast and the internal (ventral) layer is called the hypoblast (aka primitive endoderm); together, they compose the bilaminar embryonic disc." [MP:0003886] subset: early_development +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bilaminar disk" RELATED [Wikipedia:Bilaminar_disc] synonym: "bilaminary embryonic disc" EXACT [] @@ -158212,6 +157750,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Gr id: UBERON:0000092 name: post-embryonic stage def: "Stage succeeding embryo, including mature structure." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "post-hatching stage" NARROW [] synonym: "postembryonic" RELATED [] synonym: "postembryonic stage" EXACT [] @@ -158234,6 +157774,8 @@ id: UBERON:0000093 name: sulcus def: "A depression or fissure in the surface of an organ." [Wikipedia:Sulcus_(anatomy)] subset: grouping_class +subset: human_subset +subset: mouse_subset subset: non_informative xref: Wikipedia:Sulcus_(anatomy) is_a: UBERON:0000464 ! anatomical space @@ -158244,6 +157786,8 @@ creation_date: 2009-04-09T06:23:22Z id: UBERON:0000094 name: membrane organ def: "Nonparenchymatous organ that primarily consists of dense connective tissue organized into a sheet which interconnects two or more organs, separates two or more body spaces from one another, or surrounds an organ or body part. Examples: interosseous membrane of forearm, obturator membrane, tympanic membrane, fibrous pericardium, fascia lata, dura mater. [FMA]." [FMA:7145] +subset: human_subset +subset: mouse_subset synonym: "membrane" BROAD [] synonym: "membrane of organ" EXACT [] xref: FMA:7145 @@ -158256,6 +157800,8 @@ creation_date: 2009-07-30T05:19:13Z id: UBERON:0000095 name: cardiac neural crest def: "Portion of neural crest that develops from the dorsal neural tube. It overlaps the vagal neural crest and migrates to populate the pharyngeal arches 3, 4 and 6 (producing structures in the head) and to the heart, forming connective tissue that separates the great vessels of the heart. [Wikipedia]." [Wikipedia:Cardiac_neural_crest] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "cardiac neural crest complex" RELATED [Wikipedia:Cardiac_neural_crest] synonym: "complexus cristae neuralis cardiacus" RELATED [Wikipedia:Cardiac_neural_crest] @@ -158277,7 +157823,9 @@ id: UBERON:0000100 name: blastopore def: "The orifice of invagination of the endomesodermal cells during the embryonic stages of an organism." [https://github.com/obophenotype/uberon/issues/660, https://orcid.org/0000-0003-3308-6245, PMID:23103190] subset: early_development +subset: human_subset subset: metazoa_core +subset: mouse_subset xref: AAO:0000045 xref: BTO:0001695 xref: Wikipedia:Blastopore @@ -158295,6 +157843,8 @@ property_value: taxon_notes "In protostome development, the first opening in dev id: UBERON:0000101 name: lobe of lung def: "A lung lobe is one of the rounded projections that compose the lung[GO]." [GOC:GO] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lung lobe" EXACT [] synonym: "pulminory lobe" EXACT [] @@ -158315,6 +157865,8 @@ relationship: part_of UBERON:0002048 ! lung id: UBERON:0000102 name: lung vasculature def: "The lung vasculature is composed of the tubule structures that carry blood or lymph in the lungs[GO]." [GOC:GO] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lung vascular network" EXACT [OBOL:automatic] synonym: "pulmonary vasculature" EXACT [FMA:73750] @@ -158341,6 +157893,8 @@ id: UBERON:0000104 name: life cycle def: "An entire span of an organism's life. In metazoans, commences with the zygote stage and ends with the death of the organism." [https://orcid.org/0000-0002-6601-2165] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "entire life cycle" EXACT [] synonym: "entire lifespan" EXACT [] @@ -158366,6 +157920,8 @@ name: life cycle stage def: "A spatiotemporal region encompassing some part of the life cycle of an organism." [https://orcid.org/0000-0002-6601-2165] subset: common_anatomy subset: efo_slim +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "developmental stage" NARROW [] synonym: "stage" NARROW [] @@ -158397,6 +157953,8 @@ id: UBERON:0000106 name: zygote stage def: "A stage at which the organism is a single cell produced by means of sexual reproduction." [Wikipedia:Zygote] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "1-cell stage" EXACT [] synonym: "fertilized egg stage" EXACT [BTO:0000854] synonym: "fertilized egg stage" RELATED [] @@ -158427,6 +157985,8 @@ id: UBERON:0000107 name: cleavage stage def: "The first few specialized divisions of an activated animal egg; Stage consisting of division of cells in the early embryo. The zygotes of many species undergo rapid cell cycles with no significant growth, producing a cluster of cells the same size as the original zygote. The different cells derived from cleavage are called blastomeres and form a compact mass called the morula. Cleavage ends with the formation of the blastula." [GO:0040016, Wikipedia:Cleavage_(embryo)] subset: efo_slim +subset: human_subset +subset: mouse_subset xref: BilaDO:0000006 xref: BILS:0000107 xref: EFO:0001290 @@ -158451,6 +158011,8 @@ id: UBERON:0000108 name: blastula stage def: "An early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula] subset: efo_slim +subset: human_subset +subset: mouse_subset xref: BilaDO:0000007 xref: BILS:0000108 xref: EFO:0001282 @@ -158474,6 +158036,8 @@ id: UBERON:0000109 name: gastrula stage def: "A stage defined by complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm." [GO:0007369] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "blastocystis trilaminaris stage" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "trilaminar blastocyst stage" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "trilaminar blastoderm stage" RELATED [https://orcid.org/0000-0002-6601-2165] @@ -158501,6 +158065,8 @@ relationship: simultaneous_with GO:0007369 ! gastrulation id: UBERON:0000110 name: neurula stage def: "Staged defined by the formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system." [GO:0001841] +subset: human_subset +subset: mouse_subset xref: BilaDO:0000009 xref: BILS:0000110 xref: HsapDv:0000012 @@ -158520,6 +158086,8 @@ property_value: taxon_notes "In zebrafish, the times of neurulation and segmenta id: UBERON:0000111 name: organogenesis stage def: "A stage at which the ectoderm, endoderm, and mesoderm develop into the internal organs of the organism." [Wikipedia:Organogenesis] +subset: human_subset +subset: mouse_subset synonym: "segmentation stage" RELATED [] xref: BilaDO:0000010 xref: BILS:0000111 @@ -158540,6 +158108,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/533" xsd: id: UBERON:0000112 name: sexually immature stage subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "immature stage" EXACT [VHOG:FB] synonym: "juvenile stage" NARROW [XAO:1000010] synonym: "subadult stage" RELATED [http://eol.org/schema/terms/subadult] @@ -158563,6 +158133,8 @@ property_value: taxon_notes "In mammals this would include infant (nourishment f id: UBERON:0000113 name: post-juvenile adult stage def: "The stage of being a sexually mature adult animal." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "adult stage" BROAD [] xref: BILS:0000113 xref: EV:0300064 @@ -158584,6 +158156,8 @@ id: UBERON:0000114 name: lung connective tissue def: "The connective tissue located between the respiratory (airway and alveolar) epithelium, the capillary endothelium and pleural mesothelium; it contains basement membrane composed of collagen, elastin, proteoglycans, and fibronectin." [ISBN:0-683-40008-8, MGI:anna, MP:0002276, PMID:14635660] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "connective tissue of lung" EXACT [OBOL:automatic] synonym: "lung interstitial tissue" RELATED [MA:0001782] @@ -158611,6 +158185,8 @@ property_value: function_notes "it functions in the mechanical behavior of the l id: UBERON:0000115 name: lung epithelium def: "The epithelial layer of the lung." [MP:0006382] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epithelial tissue of lung" EXACT [OBOL:automatic] synonym: "epithelium of lung" EXACT [OBOL:automatic] @@ -158631,6 +158207,8 @@ property_value: taxon_notes "A pseudostratified epithelium, containing basal cel id: UBERON:0000116 name: lung saccule def: "Primitive gas exchange portion of the lung composed of type I and type II cells[GO]." [GO:0060430] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0000064 ! organ part is_a: UBERON:0004119 ! endoderm-derived structure @@ -158641,6 +158219,8 @@ relationship: part_of UBERON:0002299 {source="GO"} ! alveolus of lung id: UBERON:0000117 name: respiratory tube def: "A tube in the respiratory system. Examples: bronchus, bronchiole, trachea." [GO:0030323, http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "airway" RELATED [] synonym: "respiratory conducting tube" NARROW [MP:0004391] synonym: "segment of tracheobronchial tree" EXACT [FMA:12224] @@ -158660,6 +158240,8 @@ property_value: external_ontology_notes "in GO lung development is part of respi id: UBERON:0000118 name: lung bud def: "Structure derived from foregut that becomes a lung[GO]." [GO:0060431, Wikipedia:Respiratory_bud] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "gemma pulmonalis" RELATED OMO:0003011 [Wikipedia:Lung_buds] synonym: "gemma respiratoria" RELATED OMO:0003011 [Wikipedia:Lung_buds] @@ -158686,6 +158268,8 @@ property_value: editor_note "clarify successors - include bronchi?" xsd:string id: UBERON:0000119 name: cell layer def: "Portion of tissue, that consists of single layer of cells connected to each other by cell junctions. Examples: layer of glial cells; epithelium." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "cell sheath" RELATED [] synonym: "layer" BROAD [NCIT:C66831] @@ -158700,6 +158284,8 @@ property_value: editor_note "consider adding to caro" xsd:string id: UBERON:0000120 name: blood brain barrier def: "Cell layer consisting of lining cells that separates the central nervous system and the bloodstream. The BBB may consist of endothelial cells or glial cells. An endothelial barrier may have arisen independently several times during evolution. In bichir and lungfish the barrier is formed by brain endothelial cells, while in sturgeon it is formed by a complex perivascular glial sheath, but with no detectable tight junctions." [DOI:10.1002/glia.20642, Wikipedia:Blood-brain_barrier] +subset: human_subset +subset: mouse_subset synonym: "BBB" RELATED [] synonym: "blood-brain barrier" EXACT [] xref: http://uri.neuinfo.org/nif/nifstd/nlx_subcell_100205 @@ -158716,6 +158302,8 @@ relationship: part_of UBERON:0001016 ! nervous system id: UBERON:0000121 name: perineurium def: "A layer of thin, concentrically arranged cells with interspersed collagen that lies within the epineurium. The perineurium is a component of the blood–nerve barrier and is essential for protecting axons and their associated Schwann cells from ionic flux, toxins and infection." [NLXANAT:090205, PMID:18434767, PMID:25818566] +subset: human_subset +subset: mouse_subset xref: BTO:0003153 xref: EMAPA:37849 {source="MA:th"} xref: FMA:52585 @@ -158742,6 +158330,8 @@ id: UBERON:0000122 name: neuron projection bundle alt_id: UBERON:0005163 def: "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses." [CARO:0001001, FBbt:00005099, FBC:DOS] +subset: human_subset +subset: mouse_subset synonym: "funiculus" EXACT [] synonym: "nerve fiber bundle" EXACT [FBbt:00005099] synonym: "neural fiber bundle" EXACT [] @@ -158756,6 +158346,8 @@ relationship: part_of UBERON:0001016 ! nervous system id: UBERON:0000123 name: endoneurium def: "The loose connective tissue within the perineurium that continues into nerve fascicles and surrounds individual fibers. (Nolte, J. The Human Brain 3rd edition)." [NLXANAT:090202] +subset: human_subset +subset: mouse_subset xref: EMAPA:37847 {source="MA:th"} xref: FMA:52586 xref: NCIT:C32518 @@ -158775,6 +158367,8 @@ property_value: external_definition "a layer of delicate connective tissue that id: UBERON:0000124 name: epineurium def: "A loose connective tissue sheath surrounding each peripheral nerve. Composed mainly of colagen and fibroblasts, it forms a substantial covering over nerve trunks, then thins to an incomplete layer around smaller branches near their terminations. The epineurium is continuous centrally with the dura. Peripherally, it usually ends near the termination of a nerve fiber, but it may continue as the capsule of Meissner corpuscles and a few other encapsulated endings. Nolte, J. The Human Brain 3rd edition." [NLXANAT:090203] +subset: human_subset +subset: mouse_subset xref: BTO:0003154 xref: EMAPA:37848 {source="MA:th"} xref: FMA:12234 @@ -158794,6 +158388,8 @@ id: UBERON:0000125 name: neural nucleus def: "A spatially aggregated collection of nerve cell bodies in the CNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections, and including nearby cells that share the same cell type, chemical phenotype, and connections. (CUMBO)." [NLX:28443] subset: cumbo +subset: human_subset +subset: mouse_subset synonym: "nervous system nucleus" EXACT [] synonym: "neuraxis nucleus" EXACT [FMA:83686] synonym: "neuronal nucleus" EXACT [AEO:0000136] @@ -158816,6 +158412,8 @@ property_value: external_ontology_notes "Proposed CUMBO def from MM: A subcortic id: UBERON:0000126 name: cranial nerve nucleus def: "Nucleus that receives projections from or contains neurons that send projections through one of the cranial nerves." [NLX:28532] +subset: human_subset +subset: mouse_subset synonym: "cranial neural nucleus" EXACT [FMA:54501] synonym: "nucleus nervi cranialis" RELATED OMO:0003011 [Wikipedia:Cranial_nerve_nucleus] synonym: "nucleus of cranial nerve" EXACT [] @@ -158835,6 +158433,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gr id: UBERON:0000127 name: facial nucleus def: "The group of motor neurons residing in the pons that innervate the muscles of facial expression." [ISBN:0838580343, MP:0000909] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "facial nerve nucleus" EXACT [] synonym: "facial VII motor nucleus" RELATED [MA:0001014] @@ -158871,6 +158471,8 @@ property_value: external_ontology_notes "FMA has 3 subclasses - left, right and id: UBERON:0000128 name: olivary body def: "Prominent oval structure in the medulla oblongata, present in pairs, the lower portion of the brainstem. They contain the olivary nuclei." [Wikipedia:Olivary_body] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "oliva" RELATED OMO:0003011 [Wikipedia:Olivary_body] synonym: "olivary nucleus" RELATED [BTO:0002299] @@ -158888,6 +158490,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9a/Gr id: UBERON:0000130 name: transverse foramen def: "Foramen that pierces the transverse processes of the seven cervical vertebrae. In the upper six vertebrae, the foramen gives passage to the vertebral artery, vertebral vein, and a plexus of sympathetic nerves. The seventh foramen lacks the artery, but contains the vein and sympathetic nerves." [Wikipedia:Transverse_foramen] +subset: human_subset +subset: mouse_subset synonym: "foramen transversarium" EXACT [Wikipedia:Transverse_foramen] synonym: "foramen transversarium" RELATED OMO:0003011 [Wikipedia:Transverse_foramen] synonym: "foramen transversarium of cervical vertebra" EXACT [FMA:23998] @@ -158910,6 +158514,8 @@ id: UBERON:0000144 name: trochlea of humerus def: "The medial portion of the articular surface of the humerus is named the trochlea, and presents a deep depression between two well-marked borders; it is convex from before backward, concave from side to side, and occupies the anterior, lower, and posterior parts of the extremity. It is directly inferior to the most prominent anterior humeral fossia, the Coronoid fossia. It articulates with the ulna." [Wikipedia:Trochlea_of_humerus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "humeral trochlea" EXACT [FMA:23370] synonym: "trochlea humeri" EXACT [Wikipedia:Trochlea_of_humerus] xref: FMA:23370 @@ -158969,6 +158575,8 @@ property_value: external_definition "Paired fin located in the abdominal positio [Term] id: UBERON:0000153 name: anterior region of body +subset: human_subset +subset: mouse_subset is_a: UBERON:0000475 ! organism subdivision disjoint_from: UBERON:0000154 {source="lexical"} ! posterior region of body relationship: anterior_to UBERON:0000154 ! posterior region of body @@ -158977,6 +158585,8 @@ relationship: in_taxon NCBITaxon:33213 ! Bilateria [Term] id: UBERON:0000154 name: posterior region of body +subset: human_subset +subset: mouse_subset is_a: UBERON:0000475 ! organism subdivision relationship: in_taxon NCBITaxon:33213 ! Bilateria @@ -158986,6 +158596,8 @@ name: theca cell layer def: "A layer of the ovarian follicle that consists of theca cells." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "layer of theca cells" EXACT [] @@ -159022,6 +158634,8 @@ name: theca externa alt_id: UBERON:0005182 def: "The theca externa is the outer layers of the theca folliculi. It contains abundant collagen and is mainly supportive." [Wikipedia:Theca_externa] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "external coat of theca folliculi" RELATED [BTO:0002852] synonym: "ovary theca externa" EXACT [MA:0001713] @@ -159049,6 +158663,8 @@ name: theca interna alt_id: UBERON:0005183 def: "Theca interna cells express receptors for luteinizing hormone, which when activated will stimulate the production of androstenedione from cholesterol by the enzyme desmolase. Androstenedione ultimately gives the granulosa cells the precursor substrate for estrogen manufacturing." [Wikipedia:Theca_externa#Theca_interna] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "internal coat of capsule of Graafian follicle" RELATED [BTO:0002851] synonym: "ovary theca interna" EXACT [MA:0001714] @@ -159070,6 +158686,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0000158 name: membranous layer +subset: human_subset +subset: mouse_subset synonym: "membrane" BROAD [] synonym: "membranous organ component" EXACT [FMA:82500] xref: FMA:30322 @@ -159085,6 +158703,8 @@ id: UBERON:0000159 name: anal canal def: "The terminal part of the large intestine, continuous proximally with the rectum and distally terminates with the anus." [Wikipedia:Anal_canal] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "anal canal" EXACT [] @@ -159125,6 +158745,8 @@ id: UBERON:0000160 name: intestine def: "Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine." [GOC:GO, Wikipedia:Intestine] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -159167,6 +158789,8 @@ property_value: taxon_notes "In zebrafish, No stomach, small intestine, or large id: UBERON:0000161 name: orifice def: "Anatomical conduit that connects two adjacent body spaces (or a body space with the space surrounding the organism)[FMA,modified]." [FMA:3724] +subset: human_subset +subset: mouse_subset synonym: "anatomical orifice" EXACT [FMA:3724] synonym: "anatomical ostium" BROAD [FMA:3724] synonym: "hilum" NARROW [] @@ -159180,6 +158804,8 @@ property_value: external_ontology_notes "in FMA, this is an anatomical conduit * id: UBERON:0000162 name: cloaca def: "Common chamber into which the intestines and excretory system opens. Arises during development in all vertebrates, but in many it becomes subdivided, lost or incorporated into other structures." [ISBN:0073040584, Wikipedia:Cloaca] +subset: human_subset +subset: mouse_subset synonym: "cloacal chamber" RELATED [AAO:0000095] synonym: "vent" RELATED [XAO:0000244] xref: AAO:0000095 @@ -159210,6 +158836,8 @@ property_value: taxon_notes "Human beings only have an embryonic cloaca, which i id: UBERON:0000163 name: embryonic cloaca def: "Endoderm-lined chamber that develops as pouch-like dilation of the caudal end of the hindgut and receives the allantois ventrally and two mesonephric ducts laterally; caudally it ends blindly at the cloacal membrane formed by the union of proctodeal (anal pit) ectoderm and cloacal endoderm, with no intervening mesoderm[MP]." [MP:0010115, Wikipedia:Cloaca_(embryology)] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cloaca" RELATED SENSU [] xref: EHDAA2:0000256 @@ -159227,6 +158855,8 @@ property_value: curator_notes "this class represents the embryonic form of the c id: UBERON:0000164 name: primitive urogenital sinus def: "The ventral part of the cloaca remaining after septation of the rectum, which further develops into part of the bladder, part of the prostatic part of the male urethra and the urethra and vestibule in females." [ISBN:0-683-40008-8, MP:0010116] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fetal UGS" EXACT [PMID:18977204] synonym: "sinus urogenitalis" EXACT OMO:0003011 [] @@ -159257,7 +158887,9 @@ id: UBERON:0000165 name: mouth def: "The proximal portion of the digestive tract, containing the oral cavity and bounded by the oral opening. In vertebrates, this extends to the pharynx and includes gums, lips, tongue and parts of the palate. Typically also includes the teeth, except where these occur elsewhere (e.g. pharyngeal jaws) or protrude from the mouth (tusks)." [https://github.com/obophenotype/uberon/wiki/The-digestive-tract, Wikipedia:Mouth] subset: efo_slim +subset: human_subset subset: major_organ +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -159322,6 +158954,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/661" xsd: id: UBERON:0000166 name: oral opening def: "The orifice that connects the mouth to the exterior of the body." [https://github.com/obophenotype/uberon/wiki/The-digestive-tract] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "mouth" RELATED INCONSISTENT [] @@ -159338,6 +158972,8 @@ property_value: homology_notes "(...) mouth development is very similar in proto id: UBERON:0000167 name: oral cavity def: "Anatomical cavity at the start of the digestive tract that that is enclosed by the mouth. The boundaries and contents vary depending on the species. In vertebrates, the boundaries are the oral opening, the cheeks, the palate and (if present) the palatoglossal arch - if this is not present then the mouth and pharynx form the oropharyngeal cavity. The buccal cavity contains the teeth, tongue and palate (when present)." [https://github.com/obophenotype/uberon/wiki/The-digestive-tract, https://orcid.org/0000-0002-6601-2165, ISBN:0073040584] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -159380,6 +159016,8 @@ property_value: homology_notes "Echinoderms, hemichordates, and chordates are ca id: UBERON:0000168 name: proximal-distal subdivision of colon def: "A section dividing a colon along a proximal-distal axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "segment of colon" RELATED [FMA:222905] xref: FMA:222905 @@ -159394,6 +159032,8 @@ id: UBERON:0000170 name: pair of lungs def: "The pair of anatomical structures comprised of a left lung and right lung." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lungs" EXACT [] synonym: "lungs pair" EXACT [] @@ -159417,6 +159057,8 @@ id: UBERON:0000171 name: respiration organ def: "Organ that functions in gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms." [GO:0007585] subset: functional_classification +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "apparatus respiratorius organ" EXACT [OBOL:automatic] synonym: "breathing organ" EXACT [] @@ -159438,6 +159080,8 @@ relationship: part_of UBERON:0001004 ! respiratory system id: UBERON:0000172 name: vomit def: "A bodily fluid consisting of the expulsed contents of the stomach disgorged through the mouth or nose that happens as a result of a vomit reflex." [ENVO:00000338, UBERON:cjm, Wikipedia:Vomiting] +subset: human_subset +subset: mouse_subset synonym: "vomitus" EXACT OMO:0003011 [] xref: ENVO:00000338 xref: galen:Vomitus @@ -159448,6 +159092,8 @@ is_a: UBERON:0036017 ! regurgitated substance id: UBERON:0000173 name: amniotic fluid def: "Amniotic fluid is a bodily fluid consisting of watery liquid surrounding and cushioning a growing fetus within the amnion. It allows the fetus to move freely without the walls of the uterus being too tight against its body. Buoyancy is also provided. The composition of the fluid changes over the course of gestation. Initially, amniotic fluid is similar to maternal plasma, mainly water with electrolytes. As the fetus develops, proteins, carbohydrates, lipids, phospholipids originating from the lungs, fetal cells, and urea are deposited in the fluid." [ENVO:02000021, MP:MP] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "acqua amnii" RELATED OMO:0003011 [BTO:0000068] synonym: "liquor amnii" RELATED OMO:0003011 [BTO:0000068] @@ -159475,6 +159121,8 @@ name: excreta alt_id: UBERON:0000324 alt_id: UBERON:0007550 def: "A portion of organism substance that is the product of an excretion process that will be eliminated from the body. An excretion process is elimination by an organism of the waste products that arise as a result of metabolic activity." [GO:0007588, http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "excreted substance" EXACT [] synonym: "excretion" RELATED [BTO:0000491] synonym: "portion of excreted substance" EXACT [FMA:9674] @@ -159494,6 +159142,8 @@ relationship: output_of GO:0007588 ! excretion id: UBERON:0000175 name: pleural effusion def: "Pleural effusion is a bodily fluid that is produced in exess and accumulates in the pleural cavity, the fluid-filled space that surrounds the lungs. Excessive amounts of such fluid can impair breathing by limiting the expansion of the lungs during inhalation." [ENVO:02000033] +subset: human_subset +subset: mouse_subset xref: ENVO:02000033 xref: MESH:D010996 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ncithesaurus:Pleural_Effusion @@ -159505,6 +159155,8 @@ property_value: editor_note "cede to MPATH? Note the ncit class is under finding id: UBERON:0000176 name: oronasal secretion def: "A bodily fluid secreted from the body via the mouth or nose." [ENVO:02000035] +subset: human_subset +subset: mouse_subset synonym: "oronasal discharge" NARROW [] xref: ENVO:02000035 is_a: UBERON:0000463 ! organism substance @@ -159515,6 +159167,8 @@ relationship: produced_by UBERON:0001826 ! nasal cavity mucosa id: UBERON:0000177 name: pus def: "Pus is a bodily fluid consisting of a whitish-yellow or yellow substance produced during inflammatory responses of the body that can be found in regions of pyogenic bacterial infections. Pus is produced from the dead and living cells which travel into the intercellular spaces around the affected cells." [ENVO:02000038, Wikipedia:Pus] +subset: human_subset +subset: mouse_subset synonym: "purulent exudate" RELATED [] xref: ENVO:02000038 xref: galen:Pus @@ -159532,6 +159186,8 @@ name: blood def: "A fluid that is composed of blood plasma and erythrocytes." [FMA:9670, http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/9, Wikipedia:Blood] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -159580,6 +159236,8 @@ property_value: homology_notes "Recent findings strongly suggest that the molecu id: UBERON:0000179 name: haemolymphatic fluid def: "Circulating fluid that is part of the hemolymphoid system. Blood, lymph, interstitial fluid or its analogs." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "blood or blood analog" RELATED [] synonym: "circulating fluid" RELATED [] xref: CARO:0000081 @@ -159595,6 +159253,8 @@ creation_date: 2009-04-08T04:38:19Z id: UBERON:0000180 name: lateral lumbar region of abdomen def: "A region of the posterior torso (lower back) beneath the ribs and above the ilium." [Wikipedia:Abdomen#9-region_scheme, Wikipedia:Latus_(anatomy)] +subset: human_subset +subset: mouse_subset synonym: "flank" EXACT [Wikipedia:Latus_(anatomy)] synonym: "lateral region" EXACT [FMA:14603] synonym: "lateral region of abdomen" EXACT [FMA:14603] @@ -159615,6 +159275,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gr id: UBERON:0000199 name: neck of radius def: "The narrow part of the shaft of the radius just below the head." [http://www.medilexicon.com/medicaldictionary.php?t=58913] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "collum radii" EXACT [_rib] synonym: "radial neck" EXACT [FMA:23479] @@ -159633,6 +159295,8 @@ relationship: part_of UBERON:0004413 {source="FMA"} ! proximal epiphysis of radi id: UBERON:0000200 name: gyrus def: "A ridge on the cerebral cortex. It is generally surrounded by one or more sulci ." [https://github.com/obophenotype/uberon/issues/573, Wikipedia:Gyrus] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebral gyrus" EXACT [BTO:0002495] synonym: "folia" RELATED OMO:0003004 [] @@ -159668,6 +159332,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/573" xsd: id: UBERON:0000201 name: endothelial blood brain barrier def: "A blood brain barrier that is composed of endothelial cells." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: NIF_Subcellular:nlx_subcell_100205 is_a: UBERON:0000120 ! blood brain barrier intersection_of: UBERON:0000120 ! blood brain barrier @@ -159680,6 +159346,8 @@ creation_date: 2009-04-10T08:15:44Z id: UBERON:0000202 name: glial blood brain barrier def: "A blood brain barrier composed of glial cells." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: FBbt:00007091 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000120 ! blood brain barrier intersection_of: UBERON:0000120 ! blood brain barrier @@ -159695,6 +159363,8 @@ alt_id: UBERON:0007333 def: "Dorsal part (roof region) of the telencephalon[GO]." [GO:0021543, https://github.com/obophenotype/uberon/issues/287, ISBN:0471888893, Wikipedia:Pallium_(neuroanatomy)] subset: developmental_classification subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "area dorsalis telencephali" EXACT [ZFA:0000505] synonym: "dorsal part of telencephalon" EXACT [ISBN:0471888893] synonym: "dorsal telencephalic area" EXACT [ZFA:0000505] @@ -159724,6 +159394,8 @@ name: ventral part of telencephalon def: "Ventral part (base region) of the telencephalon." [GO:0021544, GO_REF:0000021, ISBN:0471888893, PMID:12626695] subset: developmental_classification subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "area ventralis telencephali" EXACT [ZFA:0000304] synonym: "subpallium" EXACT [GO:0021544, ZFA:0000304] synonym: "subpallium" NARROW [BTO:0003401, NCBITaxon:8782] @@ -159791,6 +159463,8 @@ id: UBERON:0000209 name: tetrapod frontal bone def: "The bone forming the forehead and roof of the eye orbit." [ISBN:0-683-40008-8, MP:0000107, PMID:7914451, Wikipedia:Frontal_bone] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "frontal" NARROW [AAO:0000206] synonym: "frontal bone" NARROW SENSU [FMA:52734, MA:0001466] @@ -159827,6 +159501,8 @@ id: UBERON:0000210 name: tetrapod parietal bone def: "In humans: bone forming side and roof of cranium. Each bone is irregularly quadrilateral in form, and has two surfaces, four borders, and four angles." [Wikipedia:Parietal_bone, ZFA:0000514] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "actinopterygian frontal bone" NARROW [TAO:0000514] synonym: "frontal bone" NARROW [TAO:0000514] @@ -159860,6 +159536,8 @@ id: UBERON:0000211 name: ligament def: "Dense regular connective tissue connecting two or more adjacent skeletal elements or supporting an organ." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000073] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -159893,6 +159571,8 @@ property_value: homology_notes "Compared with their Ediacarian predecessor, Camb id: UBERON:0000212 name: toilet claw def: "A specialized claw or nail on the foot of certain primates, used for personal grooming." [Wikipedia:Toilet-claw] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Toilet-claw is_a: UBERON:0001705 ! nail relationship: capable_of_part_of GO:0007625 ! grooming behavior @@ -159904,6 +159584,8 @@ creation_date: 2009-05-19T08:19:58Z id: UBERON:0000218 name: vertebral arch of axis def: "A neural arch that is part of a vertebral bone 2." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "vertebral foramen of cervical vertebra 2" EXACT [] xref: FMA:24053 is_a: UBERON:0003861 ! neural arch @@ -159914,6 +159596,8 @@ relationship: part_of UBERON:0001093 ! vertebral bone 2 [Term] id: UBERON:0000219 name: vertebral foramen of atlas +subset: human_subset +subset: mouse_subset synonym: "vertebral foramen of cervical vertebra 1" EXACT [] xref: FMA:24293 xref: SCTID:281228008 @@ -159928,6 +159612,8 @@ relationship: part_of UBERON:0001092 ! vertebral bone 1 id: UBERON:0000220 name: atlanto-occipital joint def: "The Atlanto-occipital joint (articulation between the atlas and the occipital bone) consists of a pair of condyloid joints. The atlanto-occipital joint is a synovial joint. The ligaments connecting the bones are: Two Articular capsules; Posterior atlantoöccipital membrane; Anterior atlantoöccipital membrane; Lateral atlantoöccipital." [Wikipedia:Atlanto-occipital_joint] +subset: human_subset +subset: mouse_subset synonym: "articulatio atlanto-occipitalis" EXACT [FMA:24939] synonym: "articulatio atlantooccipitalis" RELATED OMO:0003011 [Wikipedia:Atlanto-occipital_joint] synonym: "atlanto occipital joint" EXACT [] @@ -159958,6 +159644,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gr id: UBERON:0000221 name: supraauricular point def: "A craniometric point on the posterior root of the zygomatic process of the temporal bone directly above the auricular point." [http://www.medilexicon.com/medicaldictionary.php?t=70620] +subset: human_subset +subset: mouse_subset synonym: "supra-auricular part of head" EXACT [FMA:224222] xref: FMA:224222 is_a: UBERON:0006983 {source="FMA"} ! anatomical point @@ -159967,6 +159655,8 @@ relationship: part_of UBERON:0004655 ! zygomatic process of temporal bone id: UBERON:0000301 name: amniotic cavity def: "A closed space between the embryo and the amnion which contains the amniotic fluid and is formed by the fusion of the parts of the anterior and posterior amniotic folds." [MP:0011199] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cavitas amniotica" RELATED OMO:0003011 [Wikipedia:Amniotic_cavity] xref: BTO:0000025 @@ -159995,6 +159685,8 @@ id: UBERON:0000303 name: adductor longus def: "An adductor muscle that attaches to the hip and femur. In humans, it is a part of the adductor group of the thigh, that as the name suggests adducts the thigh. The adductor longus muscle forms the medial wall of the femoral triangle[WP, generalized]." [Wikipedia:Adductor_longus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "adductor longus muscle" EXACT [] synonym: "long adductor muscle" RELATED [BTO:0000029] @@ -160019,6 +159711,8 @@ property_value: external_ontology_notes "definition generalized to accommodate A id: UBERON:0000304 name: tendon sheath def: "A layer of membrane around a tendon. It has 2 layers: synovial sheath + fibrous tendon sheath." [Wikipedia:Tendon_sheath] +subset: human_subset +subset: mouse_subset synonym: "synovial tendon sheath" EXACT [FMA:45087] synonym: "vagina tendinis" RELATED OMO:0003011 [Wikipedia:Tendon_sheath] xref: BTO:0000051 @@ -160042,6 +159736,8 @@ id: UBERON:0000305 name: amnion def: "The thin innermost layer of the extraembryonic membranes that contains the amniotic fluid; the membrane forms a closed sac in which the embryo and later, the fetus, is suspended and protected." [MGI:csmith, MP:0005029] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "amnios" EXACT [http://placentation.ucsd.edu/glossfs.html] xref: BTO:0000065 @@ -160079,7 +159775,9 @@ id: UBERON:0000307 name: blastula alt_id: UBERON:0007011 def: "Organism at the blastula stage - an early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula] +subset: human_subset subset: inconsistent_with_fma +subset: mouse_subset synonym: "blastosphere" RELATED [Wikipedia:Blastula] synonym: "blastula embryo" EXACT [BILA:0000059] xref: BILA:0000059 @@ -160100,6 +159798,8 @@ property_value: editor_note "TODO - check relationship with epiblast. Note in FM id: UBERON:0000309 name: body wall def: "The external portion of an animal body derived from ectoderm and mesoderm layers that encloses the body cavity." [MP:0003385] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "trunk wall" NARROW [FMA:10427] synonym: "wall fo trunk" EXACT [FMA:10427] @@ -160117,6 +159817,8 @@ property_value: taxon_notes "defined generically to encompass both vertebrates a id: UBERON:0000310 name: breast def: "The upper ventral region of the torso of an organism." [Wikipedia:Breast] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "mamma" RELATED OMO:0003011 [Wikipedia:Breast] synonym: "mammary part of chest" EXACT [FMA:9601] @@ -160142,6 +159844,8 @@ id: UBERON:0000311 name: extensor muscle def: "A skeletal muscle whose contraction extends or stretches a body part." [http://www.thefreedictionary.com/extensor+muscle, https://github.com/obophenotype/uberon/issues/57] comment: Any of the muscles that increase the angle between segments of a limb, E.g. straightening the elbow or knee or bending the wrist or spine backward. The movement is usually directed backward, with the notable exception of the knee joint. In humans, certain muscles of the hand and foot are named for this function. In the hand these include the extensor carpi radialis brevis, extensor carpi radialis longus, and extensor carpi ulnaris, which run from the humerus along the back of the forearm to the metacarpal bones at the back of the hand. [http://www.britannica.com/EBchecked/topic/198909/extensor-muscle] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "extensor" RELATED [] xref: BTO:0000151 @@ -160154,6 +159858,8 @@ property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0000312 name: inner cambium layer of periosteum +subset: human_subset +subset: mouse_subset synonym: "cambial layer" EXACT [FMA:234358] synonym: "cambial layer of periosteum" EXACT [FMA:234358] synonym: "cambium" EXACT [] @@ -160173,6 +159879,8 @@ relationship: part_of UBERON:0002515 {source="FMA"} ! periosteum id: UBERON:0000313 name: portion of cartilage tissue in tibia def: "Cartilage pertaining to the tibia." [Dorlands_Medical_Dictionary:MerckSource] +subset: human_subset +subset: mouse_subset synonym: "cartilage of tibia" RELATED [FMA:33923] synonym: "tibial cartilage" EXACT [] xref: BTO:0000207 @@ -160189,6 +159897,8 @@ id: UBERON:0000314 name: cecum mucosa def: "A mucosa that is part of a cecum [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "caecum mucosa" EXACT [OBOL:automatic] synonym: "caecum mucosa of organ" EXACT [OBOL:automatic] synonym: "caecum mucous membrane" EXACT [OBOL:automatic] @@ -160225,6 +159935,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0000315 name: subarachnoid space def: "The space between the arachnoid and pia mater." [GOC:add, https://sourceforge.net/p/obo/mammalian-phenotype-requests/1168/, Wikipedia:Subarachnoid_space] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cavitas subarachnoidea" RELATED OMO:0003011 [BTO:0000230] synonym: "cavum subarachnoideale" RELATED OMO:0003011 [Wikipedia:Subarachnoid_space] @@ -160257,6 +159969,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gr id: UBERON:0000316 name: cervical mucus def: "A substance produced by the cervix and endocervical glands[BTO]. Thick acidic mucus that blocks the cervical os after mestruation[WP]. This 'infertile' mucus blocks spermatozoa from entering the uterus." [BTO:0000242, Wikipedia:Cervix#Cervical_mucus, Wikipedia:Mucus#Reproductive_system] +subset: human_subset +subset: mouse_subset synonym: "cervix mucus" EXACT [OBOL:automatic] xref: BTO:0000242 xref: FMA:83689 @@ -160275,6 +159989,8 @@ alt_id: UBERON:0004981 def: "Mucosa that is part of a colon. The mucosa of the colon is lined by a simple columnar epithelium with a thin brush border and numerous goblet cells." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "colon mucosa" EXACT [FMA:14984] synonym: "colon mucous membrane" EXACT [OBOL:automatic] synonym: "colonic mucosa" EXACT [] @@ -160300,6 +160016,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0000319 name: cytotrophoblast def: "The inner layer of the trophoblast, interior to the syncytiotrophoblast in an embryo. It serves to anchor the embryonic chorion to the maternal endometrium. Cytotrophoblasts are stem cells in the chorionic villi. During differentiation, mononuclear cytotrophoblast fuse together into the multinucleated syncytiotrophoblasts. The primary villi has only the cytotrophoblast as an axe. [WP,unvetted]." [http://placentation.ucsd.edu/glossfs.html, Wikipedia:Cytotrophoblast] +subset: human_subset +subset: mouse_subset synonym: "cellular trophoblast" EXACT [FMA:83039] synonym: "cytotrophoblastic cell" RELATED [FMA:83039] synonym: "cytotrophoblastic cell layer" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -160331,6 +160049,8 @@ name: duodenal mucosa alt_id: UBERON:0003348 def: "A mucosa that is part of a duodenum [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "doudenal mucosa" EXACT [FMA:14942] synonym: "duodenal mucous membrane" EXACT [FMA:14942] synonym: "duodenum mucosa" RELATED [BTO:0000367] @@ -160353,6 +160073,8 @@ id: UBERON:0000323 name: late embryo def: "An embryo that is at the late embryonic stage; this stage covers late steps of the embryogenesis with a fully formed embryo still developing before birth or egg hatching." [https://orcid.org/0000-0003-3308-6245] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "embryo late growth stage" RELATED [BTO:0000449] synonym: "embryo late stage" RELATED [BTO:0000449] @@ -160378,6 +160100,8 @@ property_value: external_definition "Fetal structure, which is a developmental f id: UBERON:0000325 name: gastric gland def: "The branched tubular glands found in the mucosa of the fundus and body of the stomach which contain parietal cells that secrete hydrochloric acid and zymogenic cells that produce pepsin." [MGI:anna] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim xref: BTO:0000503 @@ -160391,6 +160115,8 @@ relationship: part_of UBERON:0006924 {source="ISBN:0073040584"} ! stomach glandu id: UBERON:0000326 name: pancreatic juice def: "Pancreatic juice is slightly alkaline and contains numerous enzymes and inactive enzyme precursors including alpha-amylase, chymotrypsinogen, lipase, procarboxypeptidase, proelastase, prophospholipase A2, ribonuclease, and trypsinogen. Its high concentration of bicarbonate ions helps to neutralize the acid from the stomach." [GO:0030157] +subset: human_subset +subset: mouse_subset synonym: "pancreatic fluid" RELATED [] synonym: "pancreatic secretion" RELATED [] synonym: "succus pancreaticus" RELATED [BTO:0000504] @@ -160408,6 +160134,8 @@ relationship: produced_by UBERON:0001264 ! pancreas id: UBERON:0000328 name: gut wall def: "The wall of the digestive tract. This encompasses all parts of the digestive tract with the exception of the lumen (cavity)." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digestive tract wall" EXACT [] synonym: "wall of alimentary tract" RELATED [] synonym: "wall of digestive tract" EXACT [] @@ -160424,6 +160152,8 @@ property_value: curator_notes "We model the digestive tract as consisting of two id: UBERON:0000329 name: hair root def: "The enlarged basal part of a hair within the skin[BTO]. The root of the hair ends in an enlargement, the hair bulb, which is whiter in color and softer in texture than the shaft, and is lodged in a follicular involution of the epidermis called the hair follicle. [Wikipedia]." [BTO:0000555, Wikipedia:Hair_root] +subset: human_subset +subset: mouse_subset synonym: "root of hair" EXACT [FMA:70730] xref: BTO:0000555 xref: CALOHA:TS-0433 @@ -160442,6 +160172,8 @@ id: UBERON:0000331 name: ileal mucosa def: "A mucosa that is part of a ileum [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ileal mucous membrane" EXACT [FMA:14956] synonym: "ileum mucosa" EXACT [FMA:14956, OBOL:automatic] synonym: "ileum mucosa of organ" EXACT [OBOL:automatic] @@ -160467,6 +160199,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0000332 name: yellow bone marrow def: "Bone marrow in which the fat cells predominate in the meshes of the reticular network." [http://medical-dictionary.thefreedictionary.com/Yellow+Marrow] +subset: human_subset +subset: mouse_subset synonym: "fat marrow" RELATED [BTO:0000635] synonym: "medulla ossium flava" EXACT OMO:0003011 [BTO:0000635] synonym: "yellow marrow" EXACT [BTO:0000635] @@ -160484,6 +160218,8 @@ relationship: part_of UBERON:0007195 ! stroma of bone marrow id: UBERON:0000333 name: intestinal gland def: "A gland that is part of the intestinal mucosa. Examples include the intestinal crypts, duodenal gland[cjm]." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "bowel mucosa gland" EXACT [OBOL:automatic] synonym: "bowel mucosa of organ gland" EXACT [OBOL:automatic] @@ -160534,6 +160270,8 @@ property_value: external_ontology_notes "Note that some sources treat 'intestina id: UBERON:0000341 name: throat def: "In anatomy, the throat is the anterior part of the neck, in front of the vertebral column. It consists of the pharynx and larynx. An important feature of the throat is the epiglottis, a flap which separates the esophagus from the trachea and prevents inhalation of food or drink. The throat contains various blood vessels, various pharyngeal muscles, the trachea (windpipe) and the esophagus. The hyoid bone and the clavicle are the only bones located in the throat of mammals. It is sometimes considered a synonym for fauces. [WP,unvetted]." [Wikipedia:Throat] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "gula" RELATED OMO:0003011 [] xref: BTO:0000828 @@ -160552,6 +160290,8 @@ property_value: taxon_notes "The hyoid bone and the clavicle are the only bones id: UBERON:0000344 name: mucosa def: "A lining of mostly endodermal origin, covered in epithelium, which is involved in absorption and secretion. They line various body cavities that are exposed to the external environment and internal organs. It is at several places continuous with skin: at the nostrils, the lips, the ears, the genital area, and the anus. The sticky, thick fluid secreted by the mucous membranes and gland is termed mucus. The term mucous membrane refers to where they are found in the body and not every mucous membrane secretes mucus[WP]." [Wikipedia:Mucous_membrane] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "mucosa of organ" EXACT [FMA:85355] synonym: "mucosa of organ part" EXACT [FMA:85358] @@ -160588,6 +160328,8 @@ property_value: has_relational_adjective "mucosal" xsd:string id: UBERON:0000345 name: myelin def: "A dielectric (electrically insulating) material consisting of protein and fat that forms a layer, the myelin sheath, usually around only the axon of a neuron. Myelin is about 40 % water; the dry mass of myelin is about 70 - 85 % lipids and about 15 - 30 % proteins. Some of the proteins that make up myelin are myelin basic protein (MBP), myelin oligodendrocyte glycoprotein (MOG), and proteolipid protein (PLP). The primary lipid of myelin is a glycolipid called galactocerebroside (GalC). The intertwining hydrocarbon chains of sphingomyelin serve to strengthen the myelin sheath." [Wikipedia:Myelin] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: BTO:0000894 xref: FMA:62977 @@ -160617,6 +160359,8 @@ consider: FMA:73417 id: UBERON:0000347 name: entire myelin sheath def: "The insulating envelope that surrounds nerve fibers or axons." [MP:0003871] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "medullary sheath" RELATED [BTO:0000900] xref: BTO:0000900 @@ -160638,6 +160382,8 @@ name: ophthalmic nerve def: "The sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the orbit and its contents, the nasal cavity and the skin of the nose and forehead." [MP:0009798, Wikipedia:Ophthalmic_nerve] comment: Terminology notes. This nerve is known by a ridiculous number of names[http://palaeos.com/vertebrates/glossary/glossaryPo.html] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ciliary nerve" RELATED [http://palaeos.com/vertebrates/glossary/glossaryPo.html] synonym: "cranial nerve V, branch V1" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -160694,6 +160440,8 @@ id: UBERON:0000349 name: limbic system def: "A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. [BirnLex]." [BIRNLEX:Limbic_system, Wikipedia:Limbic_system] comment: includes the hippocampus, amygdala, anterior thalamic nuclei, and limbic cortex, which support a variety of functions including emotion, behavior, long term memory, and olfaction [Wikipedia] +subset: human_subset +subset: mouse_subset subset: non_informative subset: pheno_slim synonym: "visceral brain" RELATED [ISBN:0123813611] @@ -160717,6 +160465,8 @@ property_value: editor_note "obsoletion proposes. The current part_of children w id: UBERON:0000351 name: nuchal ligament def: "A fibrous membrane, which, in the neck, represents the supraspinal ligaments of the upper vertebrae." [Wikipedia:Nuchal_ligament] +subset: human_subset +subset: mouse_subset synonym: "ligament of neck" EXACT [FMA:13427] synonym: "ligamentum nuchae" EXACT OMO:0003011 [FMA:13427] synonym: "paddywhack" NARROW [NCBITaxon:9895, Wikipedia:Paddywhack] @@ -160743,6 +160493,8 @@ property_value: taxon_notes "In humans it is a tendon-like structure that has de id: UBERON:0000353 name: parenchyma def: "Functional part of an organ in the body. This is in contrast to the stroma, which refers to the structural tissue of organs, being exactly, connective tissues." [Wikipedia:Parenchyma] +subset: human_subset +subset: mouse_subset xref: BTO:0000999 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: BTO:0001539 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA:3015 @@ -160774,6 +160526,8 @@ id: UBERON:0000355 name: pharyngeal mucosa alt_id: UBERON:0003344 def: "A mucosa that is part of a pharynx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of pharynx" EXACT [OBOL:automatic] synonym: "mucosa of pharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of pharynx" EXACT [FMA:55031, OBOL:automatic] @@ -160800,6 +160554,8 @@ id: UBERON:0000358 name: blastocyst def: "The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm[GO]." [GO:0001824, Wikipedia:Blastocyst] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "blastocystis" RELATED OMO:0003011 [Wikipedia:Blastocyst] synonym: "blastula" RELATED [FMA:83041] xref: BTO:0001099 @@ -160828,6 +160584,7 @@ property_value: editor_note "Gilbert fig11.32 has blastocyst has giving rise to id: UBERON:0000359 name: preputial gland def: "An aired, lobulated, modified sebaceous glands located in the inguinal region adjacent to the penis and vagina, with pheromonal functions in male rodents; in males, the preputial gland empties into the preputial cavity and in females, the preputial (aka clitoral) gland duct empties into the clitoral fossa." [MP:0013329] +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "clitoral/preputial gland" RELATED [MA:0003044] @@ -160863,6 +160620,8 @@ consider: UBERON:0004760 id: UBERON:0000361 name: red bone marrow def: "The red vascular substance consisting of connective tissue and blood vessels, containing primitive blood cells, macrophages, megakaryocytes, and fat cells. Red marrow is found in the cavities of many bones. It manufactures and releases leukocytes and erythrocytes into the bloodstream." [http://medical-dictionary.thefreedictionary.com/red+marrow] +subset: human_subset +subset: mouse_subset synonym: "medulla ossium rubra" EXACT OMO:0003011 [BTO:0001160] synonym: "parenchyma of none marrow marrow" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "parenchymal red marrow" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -160883,6 +160642,8 @@ name: renal medulla def: "The inner portion of the kidney consisting of the renal pyramids." [ISBN:0-683-40008-8, MGI:smb, MP:0003014] comment: Note that 'renal medulla' is not synonymous with 'medullary region of kidney'. The former is composed of kidney pyramids only, while the latter covers kidney pyramids and renal columns, which are histologically different. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "kidney medulla" EXACT [OBOL:automatic] synonym: "medulla of kidney" EXACT [OBOL:automatic] @@ -160924,6 +160685,8 @@ property_value: structure_notes "The renal medulla is split up into a number of id: UBERON:0000363 name: reticuloendothelial system def: "A part of the immune system that consists of the phagocytic cells located in reticular connective tissue. The cells are primarily monocytes and macrophages, and they accumulate in lymph nodes and the spleen. The Kupffer cells of the liver and tissue histiocytes are also part of the RES[WP]." [Wikipedia:Reticuloendothelial_system] +subset: human_subset +subset: mouse_subset synonym: "lymphoreticular" RELATED [BioMart:BioMart] synonym: "lymphoreticular system" EXACT [Wikipedia:Reticuloendothelial_system] synonym: "mononuclear phagocyte system" EXACT [FMA:84189] @@ -160958,6 +160721,8 @@ consider: FMA:76787 id: UBERON:0000365 name: urothelium def: "An epithelial tissue layer that lines much of the urinary tract, including the renal pelvis, the ureters, the bladder, and parts of the urethra." [https://github.com/obophenotype/uberon/issues/92, Wikipedia:Urothelium] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epithelium transitionale" EXACT [FMA:63914] synonym: "transitional epithelium" BROAD INCONSISTENT [] @@ -160987,6 +160752,8 @@ property_value: has_relational_adjective "urothelial" xsd:string id: UBERON:0000366 name: flexor muscle def: "A skeletal muscle whose contraction bends a joint." [http://www.thefreedictionary.com/flexor+muscle, https://github.com/obophenotype/uberon/issues/57] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "flexor" RELATED [] @@ -161006,6 +160773,8 @@ id: UBERON:0000368 name: adductor brevis def: "The adductor brevis is a muscle in the thigh situated immediately behind the pectineus and adductor longus. It is somewhat triangular in form, and arises by a narrow origin from the outer surfaces of the superior and inferior rami of the pubis, between the gracilis and obturator externus. Its fibers, passing backward, lateralward, and downward, are inserted, by an aponeurosis, into the line leading from the lesser trochanter to the linea aspera and into the upper part of the linea aspera, immediately behind the pectineus and upper part of the adductor longus.[WP]." [Wikipedia:Adductor_brevis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "adductor brevis muscle" EXACT [] synonym: "musculus adductos brevis" EXACT [FMA:22442] xref: BTO:0001288 @@ -161029,6 +160798,8 @@ alt_id: UBERON:0010082 def: "The corpus striatum (striated body) is a compound structure consisting of the caudate nucleus and the lentiform nucleus, which consists of the putamen and the globus pallidus[WP]." [Wikipedia:Corpus_striatum] comment: * According to the 1917 version of Gray's Anatomy, it is the combination of the lentiform nucleus (also known as the lenticular nucleus) and the caudate nucleus * According to BrainInfo it is a part of the basal ganglia comprising the globus pallidus and striatum subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "striate body" RELATED [BTO:0001311] synonym: "striated body" RELATED [BTO:0001311] xref: BAMS:CSTR @@ -161058,6 +160829,8 @@ id: UBERON:0000370 name: adductor magnus def: "An adductor muscle that attaches to the pelvic bone and the femur. In humans, the adductor magnus is a large triangular muscle, situated on the medial side of the thigh. The portion which arises from the ischiopubic ramus (a small part of the inferior ramus of the pubis, and the inferior ramus of the ischium) is called the 'adductor magnesius portion', and the portion arising from the tuberosity of the ischium is called the 'hamstring portion'. The hamstring portion is not considered part of the hamstring group of muscles, but it is adjacent to it.[WP,generalized]." [Wikipedia:Adductor_magnus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "adductor magnus muscle" EXACT [] synonym: "musculus adductor magnus" RELATED OMO:0003011 [Wikipedia:Adductor_magnus_muscle] xref: AAO:0010040 @@ -161083,6 +160856,8 @@ property_value: external_ontology_notes "Definition generalized to accommodate A id: UBERON:0000371 name: syncytiotrophoblast def: "Extraembryonic cells of trophoblastic shell surrounding embryo, outside the cytotrophoblast layer, involved with implantation of the blastocyst by eroding extracellular matrix surrounding maternal endometrial cells at site of implantation, also contribute to villi. (dark staining, multinucleated)." [http://embryology.med.unsw.edu.au/Notes/placenta5.htm, Wikipedia:Syncytiotrophoblast] +subset: human_subset +subset: mouse_subset synonym: "syncitiotrophoblast" RELATED [] synonym: "syncitiotrophoblastus" RELATED OMO:0003011 [Wikipedia:Syncytiotrophoblast] synonym: "syncytial trophoblast" EXACT [FMA:83040] @@ -161108,6 +160883,8 @@ id: UBERON:0000372 name: extensor digitorum brevis pes def: "A muscle on the upper surface of the foot that helps extend digits 2 through 4." [Wikipedia:Extensor_digitorum_brevis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "extensor digitorum brevis" EXACT [FMA:51140] synonym: "extensor digitorum brevis muscle" EXACT [] synonym: "musculus extensor digitorum brevis" RELATED OMO:0003011 [Wikipedia:Extensor_digitorum_brevis_muscle] @@ -161128,6 +160905,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gr id: UBERON:0000373 name: tapetum of corpus callosum def: "On either side of the corpus collosum, the fibers radiate in the white substance and pass to the various parts of the cerebral cortex; those curving forward from the genu into the frontal lobe constitute the forceps anterior, and those curving backward into the occipital lobe, the forceps posterior. Between these two parts is the main body of the fibers which constitute the tapetum and extend laterally on either side into the temporal lobe, and cover in the central part of the lateral ventricle. [Wikipedia via Greys]." [Wikipedia:Tapetum_of_corpus_callosum] +subset: human_subset +subset: mouse_subset synonym: "tapetum" BROAD INCONSISTENT [FMA:77208] synonym: "tapetum corporis callosi" RELATED OMO:0003011 [Wikipedia:Tapetum_of_corpus_callosum] xref: DHBA:12027 @@ -161146,6 +160925,8 @@ id: UBERON:0000375 name: mandibular nerve def: "The motor and sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the auricle, the external acoustic meatus, tympanic membrane, temporal region, the cheek, the skin overlying the mandible, the anterior portion of the tongue, the floor of the mouth, lower teeth and gingiva and transmits motor information from the muscles of mastication, the mylohyoid muscle and digastric muscle and the muscles tensor tympani and tensor veli palatini." [MP:0009800, Wikipedia:Mandibular_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "inferior maxillary nerve" EXACT [FMA:52996] synonym: "mandibular division [V3]" EXACT [FMA:52996] @@ -161189,6 +160970,8 @@ id: UBERON:0000376 name: hindlimb stylopod def: "The part of the hindlimb between pelvis and the knee, corresponding to the femur." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "femur" RELATED OMO:0003011 [Wikipedia:Thigh] synonym: "hind limb stylopod" EXACT [OBOL:automatic] @@ -161237,6 +161020,8 @@ id: UBERON:0000377 name: maxillary nerve def: "The sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the palate, upper teeth and gingiva, the skin between the palpebral fissure and the mouth, and from the nasal cavity and maxillary sinuses." [MP:0009799, Wikipedia:Maxillary_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "maxillary division [V2]" EXACT [FMA:52724] synonym: "maxillary division [Vb]" EXACT [FMA:52724] @@ -161277,6 +161062,8 @@ property_value: external_definition "Medial ramus (sensory) of the trigeminal ne id: UBERON:0000378 name: tongue muscle def: "The muscular portion of the tongue." [MP:0004136, Wikipedia:Muscles_of_tongue] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "muscle of tongue" EXACT [FMA:46689] synonym: "muscle organ of tongue" EXACT [OBOL:accepted] @@ -161314,6 +161101,8 @@ property_value: homology_notes "The lamprey head contains another group of muscl id: UBERON:0000379 name: tracheal mucosa def: "A mucosa that is part of a respiratory airway." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of trachea" EXACT [OBOL:automatic] synonym: "mucosa of organ of windpipe" EXACT [OBOL:automatic] synonym: "mucosa of trachea" EXACT [OBOL:automatic] @@ -161354,6 +161143,8 @@ id: UBERON:0000381 name: urinary bladder detrusor smooth muscle def: "Bundles of smooth muscle fibers forming the muscular wall of the urinary bladder, which are arranged in a longitudinal and a circular layer and, on contraction, serve to expel urine[MP]." [MP:0011774, Wikipedia:Detrusor_urinae_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "detrusor" EXACT [FMA:68018] synonym: "detrusor muscle" EXACT [BTO:0001453] @@ -161388,6 +161179,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/57/I id: UBERON:0000382 name: apocrine sweat gland def: "Apocrine sweat glands are sweat glands composed of a coiled secretory portion located at the junction of the dermis and subcutaneous fat, from which a straight portion inserts and secretes into the infundibular portion of the hair follicle. The ducts of apocrine glands open into the canals of hair follicles. The stimulus for the secretion of apocrine sweat glands is adrenaline, which is a hormone carried in the blood[WP]." [PMID:18489347, Wikipedia:Apocrine_sweat_gland] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "glandula sudorifera apocrina" EXACT OMO:0003011 [Wikipedia:Apocrine_sweat_gland] @@ -161413,6 +161206,8 @@ name: musculature of body def: "The subdivision of the musculoskeletal system that consists of all the muscles of the body[VSAO, modified]." [VSAO:0000033] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "muscle system" EXACT [] synonym: "muscle system of body" EXACT [] @@ -161461,6 +161256,8 @@ consider: HAO:0000449 id: UBERON:0000387 name: meniscus def: "Crescent-shaped fibrocartilaginous structure present in the knee, acromioclavicular, sternoclavicular, and temporomandibular joints[2] that, in contrast to articular disks, only partly divides a joint cavity.[3] A small meniscus also occurs in the radio-carpal joint." [Wikipedia:Meniscus_(anatomy)] +subset: human_subset +subset: mouse_subset synonym: "articular disc" EXACT [FMA:76690] xref: BTO:0001592 xref: EV:0100145 @@ -161478,6 +161275,8 @@ relationship: part_of UBERON:0000982 ! skeletal joint id: UBERON:0000388 name: epiglottis def: "A part of the pharynx that consists of a flap of elastic cartilage tissue plus a mucous membrane covering, attached to the entrance of the larynx. The epiglottis is found at the root of the tongue and folds back over the entrance to the larynx during swallowing, preventing inhalation of food or drink[MP,modified]." [http://orcid.org/0000-0002-6601-2165, MGI:llw2, MP:0010371, Wikipedia:Epiglottis] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: BTO:0001628 xref: EHDAA2:0004081 @@ -161503,6 +161302,8 @@ id: UBERON:0000389 name: lens cortex def: "Tissue that surrounds the lens nucleus." [http://www.thefreedictionary.com/lens+cortex] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cortex of lens" EXACT [FMA:58970] xref: BTO:0001632 xref: CALOHA:TS-0542 @@ -161523,6 +161324,8 @@ id: UBERON:0000390 name: lens nucleus def: "The core of the crystalline lens, surrounded by the cortex." [BTO:0001633] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "nucleus of lens" EXACT [FMA:58971] xref: BTO:0001633 xref: FMA:58971 @@ -161541,6 +161344,8 @@ relationship: surrounded_by UBERON:0000389 ! lens cortex id: UBERON:0000391 name: leptomeninx def: "Pia mater or arachnoid mater." [https://github.com/obophenotype/uberon/issues/300, Wikipedia:Leptomeninges] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "arachnoid mater and pia mater" RELATED [FMA:231515] synonym: "arachnoidea mater et pia mater" RELATED [BTO:0001634] @@ -161568,6 +161373,8 @@ property_value: external_ontology_notes "in FMA/NIF this is a superclass of PM/A id: UBERON:0000392 name: longissimus muscle def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus] +subset: human_subset +subset: mouse_subset synonym: "intermediate column of erector spinae" RELATED [] synonym: "longissimus" EXACT [FMA:77178] synonym: "musculus longissimus" EXACT OMO:0003011 [BTO:0001648, Wikipedia:Longissimus] @@ -161587,6 +161394,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1f/Lo id: UBERON:0000395 name: cochlear ganglion def: "The group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain and resides on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)[MP]. distributed to the hair cells of the spiral organ. The cochlear fibers arise in bipolar cells in the spiral ganglion in the modiolus." [http://www.dartmouth.edu/~humananatomy/part_8/chapter_44.html, MP:0002855] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cochlear part of vestibulocochlear ganglion" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "Corti's ganglion" EXACT [FMA:53445] @@ -161626,6 +161435,8 @@ id: UBERON:0000396 name: vallate papilla alt_id: UBERON:0002927 def: "Any of the large papillae, which have multiple taste buds in the trough surrounding the papillae, located near the base and on the dorsal side of the tongue." [MGI:smb, MP:0006258] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "circumvallate papilla" EXACT [MA:0001594] synonym: "circumvallate papilla of tongue" EXACT [FMA:54822] @@ -161653,6 +161464,8 @@ id: UBERON:0000397 name: colonic epithelium def: "An epithelium that is part of a colon [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "colon epithelial tissue" EXACT [OBOL:automatic] synonym: "colon epithelium" EXACT [FMA:17302, OBOL:automatic] @@ -161683,6 +161496,8 @@ id: UBERON:0000398 name: cartilage tissue of sternum def: "Any portion of cartilage tissue that is part of the sternum." [https://orcid.org/0000-0002-6601-2165] comment: Examples: cartilage of manubrium, cartilage of xiphoid process +subset: human_subset +subset: mouse_subset synonym: "cartilage of sternum" EXACT [FMA:32567] xref: FMA:32567 is_a: UBERON:0002418 ! cartilage tissue @@ -161696,6 +161511,8 @@ id: UBERON:0000399 name: jejunal mucosa def: "A mucosa that is part of a jejunum [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "jejunal mucous membrane" EXACT [FMA:14949] synonym: "jejunum mucosa" EXACT [FMA:14949] synonym: "jejunum mucosa of organ" EXACT [OBOL:automatic] @@ -161722,6 +161539,8 @@ id: UBERON:0000400 name: jejunal epithelium def: "An epithelium that is part of a jejunum." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "epithelium of jejunum" EXACT [] xref: BTO:0001743 xref: CALOHA:TS-0494 @@ -161741,6 +161560,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0000401 name: mandibular ramus def: "The upturned perpendicular extremity of the mandible." [ISBN:0-683-40008-8, MP:0010150] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lower ramus" RELATED [Wikipedia:Ramus_of_the_mandible] synonym: "mandible ramus" EXACT [MA:0002815] @@ -161763,6 +161584,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Gr id: UBERON:0000402 name: nasal vestibule def: "The nasal vestibule is the most anterior part of the nasal cavity. It's enclosed by the cartilages of nose and lined by the same epithelium of the skin. The other part of the nasal cavity, which is lined by the respiratory epithelium, is called nasal cavity proper. [WP,unvetted]." [Wikipedia:Nasal_vestibule] +subset: human_subset +subset: mouse_subset synonym: "vestibular part of nasal cavity" EXACT [FMA:59644] synonym: "vestibulum nasale" RELATED [BTO:0001761] synonym: "vestibulum nasi" RELATED OMO:0003011 [BTO:0001761, Wikipedia:Nasal_vestibule] @@ -161779,6 +161602,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7c/Gr id: UBERON:0000403 name: scalp def: "The outer covering of the calvaria. It is composed of several layers: SKIN; subcutaneous connective tissue; the occipitofrontal muscle which includes the tendonous galea aponeurotica; Loose connective tissue; and the pericranium (the PERIOSTEUM of the SKULL)." [MESH:A01.456.810] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "scalpus" RELATED OMO:0003011 [Wikipedia:Scalp] xref: BTO:0001809 @@ -161806,6 +161631,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/e/eb/D id: UBERON:0000407 name: sympathetic trunk def: "One of a a paired bundle of nerve fibers plus ganglia that run from the base of the skull to the coccyx." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Sympathetic_trunk] +subset: human_subset +subset: mouse_subset synonym: "gangliated cord" EXACT [Wikipedia:Sympathetic_trunk] synonym: "sympathetic chain" EXACT [FMA:6258] synonym: "sympathetic ganglionic chain" EXACT [Wikipedia:Sympathetic_trunk] @@ -161829,6 +161656,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gr id: UBERON:0000408 name: vertebral ganglion def: "Any of a group of sympathetic ganglia which form two chains extending from the base of the skull to the coccyx along the sides of the spinal column." [BTO:0001835] +subset: human_subset +subset: mouse_subset synonym: "intermediate ganglion" EXACT [FMA:6572] xref: BTO:0001835 xref: FMA:6572 @@ -161841,6 +161670,8 @@ relationship: part_of UBERON:0001991 ! cervical ganglion id: UBERON:0000409 name: serous gland def: "A gland in which the principal secretory cells are serous secreting cells." [http://orcid.org/0000-0002-6601-2165, http://www.siumed.edu/~dking2/intro/glands.htm] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim xref: BTO:0001837 @@ -161860,6 +161691,8 @@ property_value: external_definition "glands that secrete watery albuminous mater id: UBERON:0000410 name: bronchial mucosa def: "A mucosa that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchi mucosa" EXACT [OBOL:automatic] synonym: "bronchi mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchi mucous membrane" EXACT [OBOL:automatic] @@ -161900,6 +161733,8 @@ name: visual cortex def: "The part of the occipital lobe responsible for processing visual information." [Wikipedia:Visual_cortex] comment: The visual cortex is made up of Brodmann area 17 (the primary visual cortex), and Brodmann area 18 and Brodmann area 19, the extrastriate cortical areas, in humans. subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "higher-order visual cortex" RELATED [FMA:242644] synonym: "visual areas" RELATED [BAMS:VIS] xref: BAMS:VIS @@ -161925,6 +161760,8 @@ id: UBERON:0000412 name: dermal papilla def: "A mesodermal signaling center of the hair follicle consisting of closely packed specialized mesenchymal fibroblasts. Framed by the enlarged bulb matrix in anagen." [DOI:10.1016/j.cub.2008.12.005] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "dermal papilla cell" RELATED [BTO:0001858] synonym: "dermal papillae" EXACT OMO:0003004 [] @@ -161961,6 +161798,8 @@ property_value: taxon_notes "In humans, at the surface of the skin in hands and id: UBERON:0000414 name: mucous gland def: "A gland in which the principal secretory cells are mucus secreting cells." [http://orcid.org/0000-0002-6601-2165, http://www.siumed.edu/~dking2/intro/glands.htm] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "glandula mucosa" EXACT OMO:0003011 [Wikipedia:Mucous_gland] synonym: "muciparous gland" RELATED [BTO:0001979] @@ -161986,6 +161825,8 @@ property_value: taxon_notes "In frogs and salamanders, this is the smaller of th id: UBERON:0000415 name: artery wall def: "An anatomical wall that is part of an artery [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arterial wall" EXACT [FMA:14155] synonym: "wall of artery" EXACT [FMA:14155] xref: BTO:0002009 @@ -162000,6 +161841,8 @@ relationship: part_of UBERON:0001637 ! artery id: UBERON:0000416 name: subdural space def: "A narrow fluid-containing space, often only a potential space, between the dura mater and the arachnoid." [BTO:0002082, PMID:8421539, Wikipedia:Subdural_space] +subset: human_subset +subset: mouse_subset synonym: "cavum subdurale" RELATED OMO:0003011 [BTO:0002082, Wikipedia:Subdural_space] synonym: "spatium subdurale" RELATED OMO:0003011 [BTO:0002082, Wikipedia:Subdural_space] synonym: "subdural cavity" RELATED [BTO:0002082] @@ -162027,6 +161870,8 @@ is_obsolete: true id: UBERON:0000420 name: myoepithelium def: "An epithelium consisting of myopethelial cells, which are contractile cells resembling smooth muscle cells that are present in glands, notably the mammary gland, and aid in secretion. This cell has long weaving dendritic processes containing myofilament[CL]." [CL:0000185, Wikipedia:Myoepithelial_cell] +subset: human_subset +subset: mouse_subset synonym: "myo-epithelium" EXACT [FMA:67805] synonym: "myoepitheliocytus" RELATED OMO:0003011 [Wikipedia:Myoepithelial_cell] xref: BTO:0002308 @@ -162043,6 +161888,8 @@ id: UBERON:0000423 name: eccrine sweat gland def: "A merocrine, unbranched, unbranched, coiled, tubular gland sweat gland. In humans, distributed over almost all of the body surface, and promote cooling by evaporation of their secretion." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Eccrine_sweat_gland] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "eccrine gland" RELATED [FMA:59154] @@ -162070,6 +161917,8 @@ id: UBERON:0000424 name: gastric pit alt_id: UBERON:0000425 def: "Gastric pits are indentations in the stomach which denote entrances to the gastric glands. They are deeper in the pylorus than they are in the other parts of the stomach. The human stomach has several million of these pits." [Wikipedia:Gastric_pits] +subset: human_subset +subset: mouse_subset synonym: "foveola gastrica" RELATED [BTO:0002364] synonym: "foveolae gastricae" EXACT OMO:0003004 [FMA:76583, FMA:TA] synonym: "foveolae gastricae" RELATED OMO:0003011 [Wikipedia:Gastric_pits] @@ -162088,6 +161937,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/73/Il id: UBERON:0000426 name: extravillous trophoblast def: "The outermost layer of trophoblast, produced by cytotrophoblast where there is direct contact with maternal decidua rather than blood. The EVT cells travel into the decidua, reacting with NK cells and invading maternal blood vessels feeding the placenta, softening the walls and replacing the lining with fetal tissue, a process called conversion." [BTO:0002366] +subset: human_subset +subset: mouse_subset synonym: "intermediate trophoblast" EXACT [FMA:86561] synonym: "interstitial trophoblast" RELATED [BTO:0002366] xref: BTO:0002366 @@ -162107,6 +161958,8 @@ name: prostate epithelium alt_id: UBERON:0002452 def: "The prostate epithelium." [MP:0001168] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epithelial tissue of prostate" EXACT [OBOL:automatic] synonym: "epithelial tissue of prostate gland" EXACT [OBOL:automatic] @@ -162143,6 +161996,8 @@ name: enteric plexus alt_id: UBERON:0012372 def: "A plexus of autonomic nerve fibers within the wall of the digestive tube, and made up of the submucosal, myenteric, and subserosal plexuses; it contains visceral afferent fibers, sympathetic postganglionic fibers, parasympathetic preganglionic and postganglionic fibers, and parasympathetic postganglionic cell bodies." [BTO:0002437] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "enteric nerve plexus" EXACT [FMA:77597] synonym: "intrinsic nerve plexus" EXACT [MA:0001147] synonym: "plexus entericus" EXACT [BTO:0002437] @@ -162163,6 +162018,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0000430 name: ventral intermediate nucleus of thalamus def: "A nucleus medially located within the ventral nuclei of the thalamus." [BTO:0002469] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "intermediate thalamic nuclei" RELATED OMO:0003004 [ZFA:0000370] synonym: "intermediate thalamic nucleus" RELATED [TAO:0000370] @@ -162179,6 +162036,8 @@ relationship: part_of UBERON:0001900 {source="BTO-definition", source="ZFA"} ! v id: UBERON:0000431 name: ventral medial complex of thalamus def: "A group of nuclei located in the medial portion of the ventral thalamic nuclei." [BTO:0002470] +subset: human_subset +subset: mouse_subset synonym: "nuclei ventrales mediales thalami" RELATED OMO:0003011 [BTO:0002470] synonym: "set of ventral medial nuclei of thalamus" RELATED [FMA:77795] synonym: "ventral medial complex of thalamus" EXACT [FMA:77795] @@ -162193,6 +162052,8 @@ id: UBERON:0000432 name: endopeduncular nucleus def: "A portion of the nucleus of ansa lenticularis located medial to the posterior limb of the internal capsule, along the course of the ansa lenticularis and the inferior thalamic peduncle or as a separate nucleus within the internal capsule adjacent to the medial GLOBUS PALLIDUS (NeuroNames, http://rprcsgi.rprc. washington.edu/neuronames/ (September 28, 1998)). In non-primates, the entopeduncular nucleus is analogous to both the medial globus pallidus and the entopeduncular nucleus of human." [MESH:A08.186.211.730.385.800.240] comment: The term entopeduncular nucleus in human neuroanatomy refers to a portion of the nucleus of the ansa lenticularis described variously as located medial to the posterior limb of the internal capsule ( Riley-1943 ), along the course of the ansa lenticularis and the inferior thalamic peduncle ( Crosby-1962 ), or as a separate nucleus within the internal capsule adjacent to the medial segment of the globus pallidus ( Nomina-1983 ).[NN] +subset: human_subset +subset: mouse_subset synonym: "entopeduncular nucleus" RELATED [] synonym: "nucleus endopeduncularis" RELATED [BTO:0002475] synonym: "nucleus entopeduncularis" RELATED [] @@ -162210,6 +162071,8 @@ relationship: part_of UBERON:0009641 {source="NN"} ! ansa lenticularis id: UBERON:0000433 name: posterior paraventricular nucleus of thalamus def: "The posterior of the two nuclei paraventriculares thalami." [BTO:0002456] +subset: human_subset +subset: mouse_subset synonym: "caecal epithelium" RELATED [BTO:0002477] synonym: "dorsal paraventricular nucleus of thalamus" EXACT [FMA:76961] synonym: "nucleus paraventricularis posterior thalami" RELATED [BTO:0002456, BTO:0002477] @@ -162227,6 +162090,8 @@ disjoint_from: UBERON:0000434 {source="lexical"} ! anterior paraventricular nucl id: UBERON:0000434 name: anterior paraventricular nucleus of thalamus def: "The anterior of the two nuclei paraventriculares thalami." [BTO:0002455, Dorlands_Medical_Dictionary:MerckSource] +subset: human_subset +subset: mouse_subset synonym: "anterior paraventricular nuclei" RELATED [BTO:0002455] synonym: "anterior paraventricular nucleus" EXACT [BTO:0002455] synonym: "anterior paraventricular nucleus of thalamus" RELATED [BTO:0002455] @@ -162252,6 +162117,7 @@ name: lateral tuberal nucleus def: "Nerve cell nuclei situated ventrally in the intermediate hypothalamic region, mainly in the lateral hypothalamic area." [BTO:0002481] comment: The lateral tuberal nucleus is specific to humans and higher primates, however, this term is sometimes used loosely. If using for rodents, please use tuberal nucleus (sensu Rodentia) instead. If refering to the nucleus lateralis tuberis of fish, please use nucleus lateralis tuberis system (sensu Teleostei) {xref="PMID:29976824", xref="PMID:29976812", xref="DOI:10.1016/0016-6480(71)90165-1", xref="PMID:1362279"} subset: human_reference_atlas +subset: human_subset synonym: "lateral tuberal hypothalamic nuclei" EXACT [FMA:62336] synonym: "lateral tuberal nuclear complex" EXACT [BIRNLEX:1206] synonym: "lateral tuberal nuclei" EXACT [FMA:62336] @@ -162279,6 +162145,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0000437 name: arachnoid barrier layer def: "The arachnoid barrier layer is a part of the arachnoid meningeal layer. It is formed by tight junctions between the endothelial cells of cerebral capillaries in the arachnoid mater." [BTO:0002498] +subset: human_subset +subset: mouse_subset xref: BTO:0002498 xref: FMA:231559 is_a: UBERON:0004923 {source="FMA"} ! organ component layer @@ -162299,6 +162167,8 @@ consider: FMA:77761 id: UBERON:0000439 name: arachnoid trabecula def: "The arachnoid trabeculae are delicate strands of connective tissue that loosely connect the two innermost layers of the meninges -- the arachnoid mater and the pia mater. They are found within the subarachnoid space where cerebrospinal fluid is also found. Embryologically, the trabeculae are the remnants of the common precursor that forms both the arachnoid and pial layers of the meninges." [Wikipedia:Arachnoid_trabeculae] +subset: human_subset +subset: mouse_subset synonym: "arachnoid trabeculae" RELATED OMO:0003004 [] synonym: "trabecula arachnoideum" RELATED OMO:0003011 [] xref: BTO:0002500 @@ -162316,6 +162186,8 @@ id: UBERON:0000440 name: trabecula def: "A small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue. On histological section, a trabecula can look like a septum, but in three dimensions they are topologically distinct, with trabeculae being roughly rod or pillar-shaped and septa being sheet-like. Trabeculae are usually composed of dense fibrous tissue, i.e. mainly of collagen, and in most cases provide mechanical strengthening or stiffening to a soft solid organ, such as the spleen. They can be composed of other materials, such as bone or muscle[WP]." [GO:0060343, Wikipedia:Trabecula] subset: grouping_class +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "trabeculae" EXACT OMO:0003004 [] xref: BTO:0002501 @@ -162331,6 +162203,8 @@ id: UBERON:0000442 name: right testicular vein def: "A vein that drains the left pampiniform plexus and empties into the left renal vein." [Dorlands_Medical_Dictionary:MerckSource] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "right spermatic vein" EXACT [MA:0002220] synonym: "vena testicularis (adrenalis) dextra" EXACT [FMA:14341] synonym: "vena testicularis dextra" RELATED [BTO:0002679] @@ -162354,6 +162228,8 @@ id: UBERON:0000443 name: left testicular vein def: "A vein that drains the right pampiniform plexus and empties into the inferior vena cava." [Dorlands_Medical_Dictionary:MerckSource] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "left spermatic vein" EXACT [MA:0002219] synonym: "vena testicularis dextra" RELATED [BTO:0002679] synonym: "vena testicularis sinistra" RELATED [BTO:0002680] @@ -162374,6 +162250,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0000444 name: lymphoid follicle +subset: human_subset +subset: mouse_subset synonym: "folliculus lymphaticus" RELATED [BTO:0002684] synonym: "lymphatic follicle" RELATED [BTO:0002684] synonym: "lymphatic nodule" RELATED [BTO:0002684] @@ -162398,6 +162276,8 @@ id: UBERON:0000445 name: habenular trigone def: "The habenular trigone is a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the taenia thalami. It contains a group of nerve cells termed the ganglion habenulC&. Fibers enter it from the stalk of the pineal body, and others, forming what is termed the habenular commissure, pass across the middle line to the corresponding ganglion of the opposite side. Most of its fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion." [Wikipedia:Habenular_trigone] comment: superclass in BTO is thalamic nucleus, not present in most ontologies +subset: human_subset +subset: mouse_subset synonym: "trigone of habenulae" RELATED [BTO:0002700] synonym: "trigonum habenulae" RELATED OMO:0003011 [BTO:0002700, Wikipedia:Habenular_trigone] xref: BAMS:hbt @@ -162413,6 +162293,8 @@ relationship: part_of UBERON:0001904 ! habenula id: UBERON:0000446 name: septum of telencephalon def: "Gray matter structure located on the midline of the forebrain consisting of the septum pellucidum (in some species) and the septal nuclei (Heimer, 1996)." [BIRNLEX:963] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "area septalis" EXACT OMO:0003011 [FMA:61842, FMA:TA] synonym: "massa praecommissuralis" RELATED OMO:0003011 [NeuroNames:255] @@ -162456,6 +162338,8 @@ id: UBERON:0000450 name: corpus albicans def: "White fibrous tissue that replaces the regressing corpus luteum in the human ovary in the latter half of pregnancy, or soon after ovulation when pregnancy does not supervene." [BTO:0002784] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "corpus albicans of ovary" EXACT [FMA:18620] synonym: "corpus fibrosum" RELATED [BTO:0002784] synonym: "corpus mamillare" RELATED [BTO:0002784] @@ -162473,6 +162357,8 @@ id: UBERON:0000451 name: prefrontal cortex def: "The anterior part of the frontal lobes of the brain, lying in front of the motor and premotor areas.nnThis brain region has been implicated in planning complex cognitive behaviors, personality expression, decision making and moderating correct social behavior. The basic activity of this brain region is considered to be orchestration of thoughts and actions in accordance with internal goals.nnThe most typical psychological term for functions carried out by the pre-frontal cortex area is executive function. Executive function relates to abilities to differentiate among conflicting thoughts, determine good and bad, better and best, same and different, future consequences of current activities, working toward a defined goal, prediction of outcomes, expectation based on actions, and social 'control' (the ability to suppress urges that, if not suppressed, could lead to socially-unacceptable outcomes).nnMany authors have indicated an integral link between a person's personality and the functions of the prefrontal cortex. - definition adapted from Wikipedia." [NLXANAT:090801] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "frontal association cortex" RELATED PENDING_REVIEW [MA:0000906] synonym: "prefrontal association complex" RELATED [BTO:0002807] synonym: "prefrontal association cortex" EXACT [FMA:224850] @@ -162499,6 +162385,8 @@ id: UBERON:0000453 name: decidua basalis def: "Area of uterine endometrium found between the implanted chorionic vesicle and the myometrium." [https://sourceforge.net/p/obo/mammalian-phenotype-requests/1599, MP:0012529] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "basal decidua" RELATED [MGI:anna] synonym: "decidua serotina" RELATED [BTO:0002819] @@ -162518,6 +162406,8 @@ property_value: development_notes "As the embryo enlarges, the decidua capsulari id: UBERON:0000454 name: cerebral subcortex def: "The layer located below the cerebral cortex that includes the forebrain, midbrain and hindbrain." [ncithesaurus:Cerebral_Subcortex] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebral medulla" EXACT [FMA:242188] synonym: "subcortex" RELATED [BTO:0002858] @@ -162534,6 +162424,8 @@ id: UBERON:0000456 name: secretion of exocrine gland alt_id: UBERON:0006540 def: "A portion of organism substance that is produced by exocrine glands." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "bodily secretion" EXACT [MESH:D012634] synonym: "exocrine gland fluid" RELATED [] synonym: "exocrine gland fluid or secretion" RELATED [] @@ -162562,6 +162454,8 @@ property_value: external_ontology_notes "BTO has two distunct classes, with exoc id: UBERON:0000457 name: cavernous artery def: "Any of several small branches of the internal carotid artery that supply the trigeminal ganglion and the walls of the cavernous and petrosal sinuses." [BTO:0002996] +subset: human_subset +subset: mouse_subset synonym: "cavernous branch of cavernous part of internal carotid artery" EXACT [FMA:70527] synonym: "ramus sinus cavernosi (pars cavernosa) (arteria carotis interna)" EXACT OMO:0003011 [FMA:70527, FMA:TA] xref: BTO:0002996 @@ -162579,6 +162473,8 @@ id: UBERON:0000458 name: endocervix def: "The region of the opening of the uterine cervix into the uterine cavity." [BTO:0003002] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: BTO:0003002 xref: FMA:86485 xref: NCIT:C12309 @@ -162597,6 +162493,8 @@ relationship: proximalmost_part_of UBERON:0000002 ! uterine cervix id: UBERON:0000459 name: uterine wall def: "An anatomical wall that is part of a uterus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anatomical wall of uterus" EXACT [OBOL:automatic] synonym: "uterus anatomical wall" EXACT [OBOL:automatic] synonym: "uterus wall" EXACT [OBOL:automatic] @@ -162614,6 +162512,8 @@ relationship: part_of UBERON:0000995 ! uterus id: UBERON:0000460 name: major vestibular gland def: "The paired glands located slightly posterior and to the left and right of the opening of the vagina in the superficial perineal pouch in females; they secrete mucus to lubricate the vagina and are homologous to bulbourethral (Cowper's) glands in males." [MGI:anna, MP:0011787] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "Bartholin gland" EXACT [] @@ -162651,6 +162551,8 @@ property_value: editor_note "resolve difference in WP vs MP, superficial vs deep id: UBERON:0000461 name: minor vestibular gland def: "Small mucous glands opening upon the vestibular mucous membrane between the urethral and the vaginal orifice." [BTO:0003116] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "glandula vestibular minor" EXACT [FMA:20019] synonym: "glandula vestibulares minor" RELATED [BTO:0003116] @@ -162685,6 +162587,8 @@ id: UBERON:0000463 name: organism substance def: "Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [http://orcid.org/0000-0001-9114-8737] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: upper_level synonym: "body fluid or substance" EXACT [MA:0002450] @@ -162723,6 +162627,8 @@ id: UBERON:0000464 name: anatomical space def: "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." [http://orcid.org/0000-0001-9114-8737] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "anatomical spaces" RELATED OMO:0003004 [ZFA:0001643] synonym: "lumen" BROAD [] @@ -162755,6 +162661,8 @@ id: UBERON:0000465 name: material anatomical entity def: "Anatomical entity that has mass." [http://orcid.org/0000-0001-9114-8737] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: upper_level xref: AAO:0010264 xref: AEO:0000006 @@ -162779,6 +162687,8 @@ id: UBERON:0000466 name: immaterial anatomical entity def: "Anatomical entity that has no mass." [http://orcid.org/0000-0001-9114-8737] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "immaterial physical anatomical entity" EXACT [FMA:67112] xref: AAO:0010265 @@ -162804,6 +162714,8 @@ name: anatomical system def: "Multicellular, connected anatomical structure that has multiple organs as parts and whose parts work together to achieve some shared function." [CARO:0000011] subset: common_anatomy subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: upper_level @@ -162856,6 +162768,8 @@ name: multicellular organism def: "Anatomical structure that is an individual member of a species and consists of more than one cell." [CARO:0000012, http://orcid.org/0000-0001-9114-8737, Wikipedia:Multi-cellular_organism] subset: common_anatomy subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: upper_level @@ -162926,6 +162840,8 @@ consider: UMLS:C1178969 {source="ncithesaurus:Cell_Part"} id: UBERON:0000471 name: compound organ component def: "Multi-tissue structure that is part of a compound organ." [CARO:0000019, http://orcid.org/0000-0001-9114-8737] +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "compound organ components" RELATED OMO:0003004 [ZFA:0001489] xref: AAO:0010017 @@ -162946,6 +162862,8 @@ property_value: curator_notes "this class was introduced for consistency with CA id: UBERON:0000472 name: simple organ def: "Multi-tissue structure that is not part of a compound organ." [CARO:0000021, http://orcid.org/0000-0001-9114-8737] +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "simple organs" RELATED OMO:0003004 [ZFA:0001492] xref: AAO:0010051 @@ -162967,6 +162885,8 @@ name: testis alt_id: UBERON:0002117 def: "A gonad of a male animal. A gonad produces and releases sperm." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -163027,6 +162947,8 @@ name: female reproductive system def: "The organs and associated structures associated with bearing offspring in a female animal." [http://orcid.org/0000-0002-6601-2165, MP:0001119, Wikipedia:Female_genitalia] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "female genital system" RELATED [] @@ -163076,6 +162998,8 @@ name: organism subdivision def: "Anatomical structure which is a subdivision of a whole organism, consisting of components of multiple anatomical systems, largely surrounded by a contiguous region of integument." [CARO:0000032, CARO:DOS, http://orcid.org/0000-0001-9114-8737] subset: common_anatomy subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: upper_level @@ -163127,6 +163051,8 @@ id: UBERON:0000476 name: acellular anatomical structure def: "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue." [http://orcid.org/0000-0001-9114-8737] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "acellular anatomical structures" RELATED OMO:0003004 [ZFA:0000382] xref: AAO:0010268 @@ -163152,6 +163078,8 @@ id: UBERON:0000477 name: anatomical cluster def: "Anatomical group whose component anatomical structures lie in close proximity to each other." [FBbt:00007277] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: upper_level xref: FBbt:00007277 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: VHOG:0001737 @@ -163165,6 +163093,8 @@ id: UBERON:0000478 name: extraembryonic structure def: "A multicellular anatomical structure that is associated with an embryo and derived from the zygote from which it develops, but which does not contribute to the embryo proper or to structures that are part of the same organism after embryogenesis." [CARO:DOS, http://orcid.org/0000-0001-9114-8737, https://cedar.bio.indiana.edu/trac/env/ontologies/ticket/279] comment: see also conceptus extraembryonic component in EHDAA2. +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -163200,6 +163130,8 @@ id: UBERON:0000479 name: tissue def: "Multicellular anatomical structure that consists of many cells of one or a few types, arranged in an extracellular matrix such that their long-range organisation is at least partly a repetition of their short-range organisation." [CARO:0000043] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: upper_level synonym: "portion of tissue" EXACT [CARO:0000043] @@ -163241,6 +163173,8 @@ id: UBERON:0000480 name: anatomical group def: "Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue." [CARO:0000054, http://orcid.org/0000-0001-9114-8737] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: upper_level xref: AAO:0010008 xref: AEO:0000054 @@ -163266,6 +163200,8 @@ id: UBERON:0000481 name: multi-tissue structure def: "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types." [CARO:0000055, http://orcid.org/0000-0001-9114-8737] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "multi-tissue structures" RELATED OMO:0003004 [ZFA:0001488] xref: AAO:0010048 @@ -163292,6 +163228,8 @@ id: UBERON:0000482 name: basal lamina of epithelium def: "Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue." [http://orcid.org/0000-0001-9114-8737] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "basal lamina" RELATED [CARO:0000065] @@ -163329,6 +163267,8 @@ id: UBERON:0000483 name: epithelium def: "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. Examples: simple squamous epithelium, glandular cuboidal epithelium, transitional epithelium, myoepithelium[CARO]." [http://orcid.org/0000-0001-9114-8737, Wikipedia:Epithelium] comment: Editor note: surface epithelium may contain non-epithelial cells, such as melanocytes, lymphocytes and dendritic cells, within the sheet of epithelial cells. Do we consider these part of the epithelium, or located-in it? +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -163374,6 +163314,8 @@ property_value: homology_notes "The two basic types of metazoan tissue are epith id: UBERON:0000484 name: simple cuboidal epithelium def: "Unilaminar epithelium that consists of a single layer of cuboidal cells." [http://orcid.org/0000-0001-9114-8737, Wikipedia:Simple_cuboidal_epithelium] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "epithelium simplex cuboideum" EXACT [] @@ -163400,6 +163342,8 @@ property_value: editor_note "needs to be synchronized with CL - there is no dist id: UBERON:0000485 name: simple columnar epithelium def: "Unilaminar epithelium, which consists of a single layer of columnar cells. Examples: ciliated columnar epithelium, gastric epithelium, microvillus columnar epithelium.[FMA]." [FMA:FMA, http://orcid.org/0000-0001-9114-8737, Wikipedia:Simple_columnar_epithelium] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "columnar epithelium" BROAD [EHDAA2:0003068] @@ -163430,6 +163374,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gr id: UBERON:0000486 name: multilaminar epithelium def: "Epithelium which consists of more than one layer of epithelial cells that may or may not be in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, ciliated stratified columnar epithelium.[FMA]." [FMA:FMA, http://orcid.org/0000-0001-9114-8737, Wikipedia:Stratified_epithelium] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "laminated epithelium" RELATED [BTO:0002074] @@ -163456,6 +163402,8 @@ property_value: external_definition "Epithelium that consists of more than one l id: UBERON:0000487 name: simple squamous epithelium def: "Unilaminar epithelium which consists of a single layer of squamous cells. Examples: pulmonary alveolar epithelium, endothelium.[FMA]." [FMA:45565, http://orcid.org/0000-0001-9114-8737, Wikipedia:Simple_squamous_epithelium] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "epithelium simplex squamosum" EXACT [] @@ -163486,6 +163434,8 @@ property_value: external_definition "Unilaminar epithelium that consists of a si id: UBERON:0000488 name: atypical epithelium def: "Epithelium that consists of epithelial cells not arranged in one ore more layers." [http://orcid.org/0000-0001-9114-8737] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "atypical epithelia" RELATED OMO:0003004 [ZFA:0001493] synonym: "heterogenous epithelium" EXACT [] @@ -163505,6 +163455,8 @@ is_a: UBERON:0000483 ! epithelium id: UBERON:0000489 name: cavitated compound organ def: "Compound organ that contains one or more macroscopic anatomical spaces." [http://orcid.org/0000-0001-9114-8737] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: upper_level synonym: "cavitated compound organs" RELATED OMO:0003004 [ZFA:0001490] @@ -163531,6 +163483,8 @@ property_value: curator_notes "this class was introduced for consistency with CA id: UBERON:0000490 name: unilaminar epithelium def: "Epithelium which consists of a single layer of epithelial cells. Examples: endothelium, mesothelium, glandular squamous epithelium.[FMA]." [FMA:45561, http://orcid.org/0000-0001-9114-8737] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "simple epithelium" EXACT [FMA:45561] synonym: "unilaminar epithelia" RELATED OMO:0003004 [ZFA:0001495] @@ -163556,6 +163510,8 @@ property_value: external_definition "Epithelium that consists of a single layer id: UBERON:0000491 name: solid compound organ def: "Compound organ that does not contain macroscopic anatomical spaces." [http://orcid.org/0000-0001-9114-8737] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: upper_level synonym: "solid compound organs" RELATED OMO:0003004 [ZFA:0001491] @@ -163579,6 +163535,8 @@ id: UBERON:0000569 name: ileocecal valve def: "The ileocecal valve is a sphincter muscle situated at the junction of the small intestine (ileum) and the large intestine. Its critical function is to limit the reflux of colonic contents into the ileum." [Wikipedia:Ileocecal_valve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "Tulp's valve" RELATED [Wikipedia:Ileocecal_valve] synonym: "valva ileocaecalis" RELATED OMO:0003011 [Wikipedia:Ileocecal_valve] synonym: "valva ileocaecalis (valva ilealis)" EXACT [FMA:15973] @@ -163602,6 +163560,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l id: UBERON:0000642 name: suspensory ligament of duodenum def: "A thin muscle connecting the junction between the duodenum, jejunum, and duodenojejunal flexure to connective tissue surrounding the superior mesenteric artery and coeliac artery." [Wikipedia:Suspensory_muscle_of_duodenum] +subset: human_subset +subset: mouse_subset synonym: "ligament of Treitz" EXACT [FMA:20509] synonym: "muscle of Treitz" EXACT [FMA:20509] synonym: "musculus suspensorius duodeni" EXACT [FMA:20509] @@ -163622,6 +163582,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ed/Gr id: UBERON:0000711 name: splenius capitis def: "A muscle that arises from the lower half of the ligamentum nuchæ, from the spinous process of the seventh cervical vertebra, and from the spinous processes of the upper three or four thoracic vertebræ and inserts the mastoid process of the temporal bone, and into the rough surface on the occipital bone just below the lateral third of the superior nuchal line[WP,modified]." [Wikipedia:Splenius_capitis_muscle] +subset: human_subset +subset: mouse_subset synonym: "musculus splenius capitis" RELATED OMO:0003011 [Wikipedia:Splenius_capitis_muscle] synonym: "splenius capitis muscle" EXACT [Wikipedia:Splenius_capitis_muscle] xref: FMA:22653 @@ -163639,6 +163601,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/51/Sp id: UBERON:0000908 name: hippocampal commissure def: "The triangular subcallosal plate of commissural fibers resulting from the converging of the right and left fornix bundles which exchange numerous fibers and which curve back in the contralateral fornix to end in the hippocampus of the opposite side." [ISBN:0-683-40008-8, MP:0008221] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "commissura hippocampi" EXACT OMO:0003011 [FMA:61970, FMA:TA] @@ -163680,6 +163644,8 @@ id: UBERON:0000910 name: chyme def: "A semifluid mass of partly digested food expelled by the stomach into the duodenum." [Wikipedia:Chyme] comment: Chyme has a low pH that is countered by the production of bile, helping to further digest food. Chyme is also part liquid and part solid: a thick semifluid mass of partially digested food and digestive secretions that is formed in the stomach and intestine during digestion. +subset: human_subset +subset: mouse_subset synonym: "chymus" EXACT [ENVO:02000026] xref: ENVO:02000026 xref: FMA:62961 @@ -163696,6 +163662,8 @@ relationship: output_of GO:0007586 ! digestion id: UBERON:0000911 name: chyle def: "Chyle is a bodily fluid consisting of a milky fluid consisting of lymph and emulsified fats; formed in the small intestine during digestion of ingested fats." [http://wordnet.princeton.edu/perl/webwn?s=chyle, Wikipedia:Chyle] +subset: human_subset +subset: mouse_subset xref: ENVO:02000030 xref: FMA:61403 xref: GAID:1187 @@ -163713,6 +163681,8 @@ relationship: produced_by UBERON:0002108 ! small intestine id: UBERON:0000912 name: mucus def: "Mucus is a bodily fluid consisting of a slippery secretion of the lining of the mucous membranes in the body. It is a viscous colloid containing antiseptic enzymes (such as lysozyme) and immunoglobulins. Mucus is produced by goblet cells in the mucous membranes that cover the surfaces of the membranes. It is made up of mucins and inorganic salts suspended in water." [Wikipedia:Mucus] +subset: human_subset +subset: mouse_subset xref: CALOHA:TS-2144 xref: ENVO:02000040 xref: FMA:66938 @@ -163734,6 +163704,8 @@ property_value: has_relational_adjective "mucous" xsd:string id: UBERON:0000913 name: interstitial fluid def: "Interstitial fluid is a bodily fluid consisting of a solution which bathes and surrounds the cells of multicellular animals. It is the main component of the extracellular fluid, which also includes plasma and transcellular fluid." [Wikipedia:Interstitial_fluid] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "intercellular fluid" EXACT [ENVO:02000042] synonym: "tissue fluid" EXACT [ENVO:02000042] @@ -163751,6 +163723,8 @@ relationship: surrounds CL:0000000 ! cell id: UBERON:0000914 name: organismal segment def: "One of the repeated divisions of the whole organism." [FB:gg, Wikipedia:Segmentation_(biology)] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: upper_level synonym: "segment" EXACT [FBbt:00000003] @@ -163767,6 +163741,8 @@ property_value: editor_note "review this post-CARO2" xsd:string id: UBERON:0000915 name: thoracic segment of trunk def: "Subdivision of trunk that lies between the head and the abdomen." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "anterior subdivision of trunk" RELATED [] synonym: "thorax" EXACT [MA:0000022] @@ -163792,6 +163768,8 @@ id: UBERON:0000916 name: abdomen def: "The subdivision of the vertebrate body between the thorax and pelvis. The ventral part of the abdomen contains the abdominal cavity and visceral organs. The dorsal part includes the abdominal section of the vertebral column." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "abdominopelvic region" EXACT [FMA:9577] @@ -163859,6 +163837,8 @@ id: UBERON:0000920 name: egg chorion def: "A protective, noncellular membrane that surrounds the eggs of various animals including insects and fish [GO]." [GO:0042600, Wikipedia:Chorion_(egg)] subset: dubious_grouping +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "chorion" RELATED [] @@ -163891,6 +163871,8 @@ id: UBERON:0000922 name: embryo def: "Anatomical entity that comprises the organism in the early stages of growth and differentiation that are characterized by cleavage, the laying down of fundamental tissues, and the formation of primitive organs and organ systems. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant." [BTO:0000379, FB:FBrf0039741, FB:FBrf0041814, GO:0009790, Wikipedia:Embryo] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -163940,6 +163922,8 @@ id: UBERON:0000923 name: germ layer def: "A layer of cells produced during the process of gastrulation during the early development of the animal embryo, which is distinct from other such layers of cells, as an early step of cell differentiation. The three types of germ layers are the endoderm, ectoderm, and mesoderm." [https://github.com/obophenotype/uberon/issues/203, Wikipedia:Germ_layer] comment: Classically the germ layers are ectoderm, mesoderm and endoderm. Alternatively: primary = ectoderm, endoderm; secondary=mesoderm; tertiary=dorsal mesoderm, NC[https://github.com/obophenotype/uberon/wiki/The-neural-crest] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "embryonic germ layer" RELATED [] @@ -163975,6 +163959,8 @@ id: UBERON:0000924 name: ectoderm def: "Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [Wikipedia:Ectoderm] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -164016,6 +164002,8 @@ id: UBERON:0000925 name: endoderm def: "Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut." [Wikipedia:Endoderm] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -164057,6 +164045,8 @@ name: mesoderm alt_id: UBERON:0003263 def: "The middle germ layer of the embryo, between the endoderm and ectoderm." [Wikipedia:Mesoderm] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -164106,6 +164096,8 @@ name: mesectoderm def: "A double row of cells which are located at the midline from the end of gastrulations. The morphology of these cells is distinct from adjacent ectodermal cells - they are elongated such that one end remains exposed to the outside of the embryo at the mideline while the other end bissects the internalised mesoderm." [FB:FBrf0089570] comment: Split term? The part of the mesenchyme derived from ectoderm, especially from the embryonic neural crest from which the pigment cells, meninges, and most of the branchial cartilages develop.[TFD] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "MesEc" RELATED [] xref: EFO:0003336 @@ -164129,6 +164121,8 @@ consider: MIAA:0000244 id: UBERON:0000929 name: pharyngeal branch of vagus nerve def: "Motor nerve of the pharynx, arises from the upper part of the ganglion nodosum, and consists principally of filaments from the cranial portion of the accessory nerve." [Wikipedia:Pharyngeal_part_of_vagus_nerve] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "pharyngeal branch" EXACT [FMA:6234] synonym: "pharyngeal branch of inferior vagal ganglion" EXACT [FMA:6234] @@ -164154,6 +164148,8 @@ id: UBERON:0000930 name: stomodeum def: "Anterior part of the embryonic digestive tract that develops into a mouth. The stomodeum includes as parts an invagination of the ectoderm and the stomodeal cavity." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/326, Wikipedia:Stomodeum] subset: grouping_class +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -164192,6 +164188,8 @@ property_value: taxon_notes "This class groups together disparate structures as id: UBERON:0000931 name: proctodeum def: "Inward fold on the surface of the embryonic ectoderm that develops into an ectodermal terminal part of the digestive tract." [https://github.com/obophenotype/uberon/issues/685, https://sourceforge.net/p/fbbtdv/tickets/52, ZFA:0000066] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "amnioproctodeal invagination" NARROW [FBbt:00000123] synonym: "anal pit" RELATED [VHOG:0000139] @@ -164239,6 +164237,8 @@ name: chordate pharyngeal muscle def: "A muscle that acts on the pharynx[WP, vetted]." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Pharyngeal_muscles] comment: Innervation notes: They are innervated by the pharyngeal branch of the Vagus nerve (CN X) with the exception of the stylopharyngeus muscle which is innervated by the glossopharyngeal nerve (CN IX).[WP] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "branchial muscle" EXACT [ZFA:0000172] synonym: "branchial muscles" RELATED OMO:0003004 [TAO:0000172] @@ -164300,6 +164300,8 @@ id: UBERON:0000935 name: anterior commissure def: "A bundle of myelinated nerve fibers passing transversely through the lamina terminalis and connecting symmetrical parts of the two cerebral hemispheres; it consists of a smaller anterior part (pars anterior commissurae anterioris) and a larger posterior part (pars posterior commissurae anterioris)." [BTO:0002169] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -164349,6 +164351,8 @@ property_value: homology_notes "In all vertebrates the thin structure that conne id: UBERON:0000936 name: posterior commissure def: "Rounded band of white fibers crossing the middle line on the dorsal aspect of the upper end of the cerebral aqueduct. It is important in the bilateral pupillary light reflex. Its fibers acquire their medullary sheaths early, but their connections have not been definitely determined. Most of them have their origin in a nucleus, the nucleus of the posterior commissure (nucleus of Darkschewitsch), which lies in the central gray substance of the upper end of the cerebral aqueduct, in front of the nucleus of the oculomotor nerve. Some are probably derived from the posterior part of the thalamus and from the superior colliculus, whereas others are believed to be continued downward into the medial longitudinal fasciculus. The posterior commissure interconnects the pretectal nuclei, mediating the consensual pupillary light reflex[WP]. Diencephalic tract which is located in the vicinity of the dorsal diencephalon and mesencephalon and connects the pretectal nuclei. From Neuroanatomy of the Zebrafish Brain[ZFA]." [Wikipedia:Posterior_commissure, ZFA:0000320] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -164417,6 +164421,8 @@ id: UBERON:0000941 name: cranial nerve II def: "Cranial nerve fiber tract which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract. Transmits visual information from the retina to the brain[ZFA]." [ISBN:0471209627, ISBN:0471888893] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -164481,6 +164487,8 @@ id: UBERON:0000942 name: frontal nerve (branch of ophthalmic) def: "The frontal nerve is the largest branch of the ophthalmic, and may be regarded, both from its size and direction, as the continuation of the nerve. It enters the orbit through the supraorbital foramen, and runs forward between the Levator palpebræ superioris and the periosteum. Midway between the apex and base of the orbit it divides into two branches, supratrochlear nerve and supraorbital nerve. [WP,unvetted]." [Wikipedia:Frontal_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "frontal nerve" EXACT [FMA:52638] synonym: "nervus frontalis" RELATED OMO:0003011 [Wikipedia:Frontal_nerve] @@ -164518,7 +164526,9 @@ name: stomach def: "An expanded region of the vertebrate alimentary tract that serves as a food storage compartment and digestive organ. A stomach is lined, in whole or in part by a glandular epithelium." [https://orcid.org/0000-0002-6601-2165, ISBN:0073040584, Wikipedia:Stomach] subset: efo_slim subset: human_reference_atlas +subset: human_subset subset: major_organ +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -164573,6 +164583,8 @@ id: UBERON:0000946 name: cardiac valve def: "A membranous fold of the heart that prevents reflux of fluid." [MESH:A07.541.510, MP:0000285, PMID:7926784] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -164616,6 +164628,8 @@ def: "The main trunk of the systemic arterial system that carries blood from the subset: efo_slim subset: grouping_class subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "arteria maxima" RELATED OMO:0003011 [Wikipedia:Aorta] @@ -164665,7 +164679,9 @@ def: "A myogenic muscular circulatory organ found in the vertebrate cardiovascul comment: Taxon notes:" the ascidian tube-like heart lacks chambers....The ascidian heart is formed after metamorphosis as a simple tube-like structure with a single-layered myoepithelium that is continuous with a single-layered pericar- dial wall. It lacks chambers and endocardium.... The innovation of the chambered heart was a key event in vertebrate evolution, because the chambered heart generates one-way blood flow with high pressure, a critical requirement for the efficient blood supply of large-body vertebrates... all extant vertebrates have hearts with two or more chambers (Moorman and Christoffels 2003)" DOI:10.1101/gad.1485706 subset: efo_slim subset: human_reference_atlas +subset: human_subset subset: major_organ +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -164726,6 +164742,8 @@ id: UBERON:0000949 name: endocrine system def: "Anatomical system that consists of the glands and parts of glands that produce endocrine secretions and help to integrate and control bodily metabolic activity." [NLM:endocrine+system, Wikipedia:Endocrine_system] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -164780,6 +164798,8 @@ id: UBERON:0000950 name: gracilis def: "The most superficial muscle on the medial side of the thigh. It is thin and flattened, broad above, narrow and tapering below. It arises by a thin aponeurosis from the anterior margins of the lower half of the symphysis pubis and the upper half of the pubic arch." [Wikipedia:Gracilis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "gracilis muscle" EXACT [BTO:0000536] synonym: "musculus gracilis" EXACT OMO:0003011 [Wikipedia:Gracilis_muscle] @@ -164806,6 +164826,8 @@ property_value: taxon_notes "A&P heads in rat, single head in humans[DOI:10.1002 id: UBERON:0000951 name: rotator muscle of the vertebral column def: "Any of a number of short transversospinal muscles chiefly developed in cervical, lumbar, and thoracic regions, arising from the transverse process of one vertebra and inserted into the root of the spinous process of the next two or three vertebrae above, with nerve supply from the dorsal branches of the spinal nerve, and whose actions rotate the vertebral column." [http://medical-dictionary.thefreedictionary.com/rotator+muscle] +subset: human_subset +subset: mouse_subset synonym: "rotator muscle" BROAD [FMA:23081] xref: FMA:23081 xref: SCTID:244872002 @@ -164855,7 +164877,9 @@ def: "The brain is the center of the nervous system in all vertebrate, and most subset: cumbo subset: efo_slim subset: human_reference_atlas +subset: human_subset subset: major_organ +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -164928,6 +164952,8 @@ name: cerebral cortex def: "The thin layer of gray matter on the surface of the cerebral hemisphere that develops from the telencephalon. It consists of the neocortex (6 layered cortex or isocortex), the hippocampal formation and the olfactory cortex." [BIRNLEX:1494] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "brain cortex" RELATED [BTO:0000233] @@ -164987,6 +165013,8 @@ property_value: taxon_notes "hagfishes have independently evolved a highly lamin id: UBERON:0000957 name: lamina def: "Any thin layer or plate." [Wikipedia:Lamina_of_the_vertebral_arch] +subset: human_subset +subset: mouse_subset subset: non_informative subset: uberon_slim subset: upper_level @@ -165004,6 +165032,8 @@ property_value: has_relational_adjective "laminar" xsd:string id: UBERON:0000958 name: medulla of organ def: "Middle part of an organ, surrounded by the cortex." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "medulla" EXACT [FMA:61108] xref: FMA:61108 @@ -165019,6 +165049,8 @@ property_value: has_relational_adjective "medullary" xsd:string id: UBERON:0000959 name: optic chiasma def: "A decussation of the diencephalon where the fibers of the optic nerve cross." [http://orcid.org/0000-0002-6601-2165, MGI:llw2, MP:0009770, Wikipedia:Optic_chiasm] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -165088,6 +165120,8 @@ id: UBERON:0000961 name: thoracic ganglion def: "The thoracic ganglia are paravertebral ganglia. The thoracic portion of the sympathetic trunk typically has 12 thoracic ganglia. Emerging from the ganglia are thoracic splancic nerves (the cardiopulmonary, the greater, lesser, and least splanchic nerves) that help provide sympathetic innervation to abdominal structures. Also, the ganglia of the thoracic sympathetic trunk have both white and gray rami communicantes. The white rami carry sympathetic fibers arising in the spinal cord into the sympathetic trunk. [WP,unvetted]." [Wikipedia:Thoracic_ganglion] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "ganglion of thorax" EXACT [OBOL:automatic] synonym: "ganglion thoracicum splanchnicum" EXACT OMO:0003011 [FMA:6471, FMA:TA] @@ -165120,6 +165154,8 @@ name: nerve of cervical vertebra def: "The cervical nerves are the spinal nerves from the cervical vertebrae. Although there are seven cervical vertebrae (C1-C7), there are eight cervical nerves (C1-C8). All nerves except C8 emerge above their corresponding vertebrae, while the C8 nerve emerges below the C7 vertebra. (In the other portions of the spine, the nerve emerges below the vertebra with the same name. Dorsal (posterior) distribution includes the greater occipital (C2) and third occipital (C3). Ventral (anterior) distribution includes the cervical plexus (C1-C4) and brachial plexus (C5-C8) [WP,unvetted]." [Wikipedia:Cervical_nerves] comment: Innervates: sternohyoid muscle, sternothyroid muscle, omohyoid muscle[WP] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "cervical nerve" EXACT [FMA:5859] synonym: "cervical nerve tree" EXACT [] @@ -165158,6 +165194,8 @@ name: cornea def: "The transparent anterior portion of the fibrous coat of the eye that serves as the chief refractory structure." [ISBN:0-683-40008-8, MESH:A09.371.060.217, MP:0001312] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -165208,6 +165246,8 @@ name: lens of camera-type eye def: "A transparent and refractive lens located posterior to the iris. The lens of camera-type eye refracts light to be focused on the retina." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Lens_(anatomy)] comment: The lens is avascular and nourished by diffusion from the aqueous and vitreous humors. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -165257,6 +165297,8 @@ def: "The retina is the innermost layer or coating at the back of the eyeball, w comment: Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Use the parent class photoreceptor array / light-sensitive tissue for arthropods subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -165346,7 +165388,9 @@ def: "An organ that detects light." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: functional_classification subset: human_reference_atlas +subset: human_subset subset: major_organ +subset: mouse_subset subset: organ_slim subset: uberon_slim synonym: "light-detecting organ" RELATED [] @@ -165428,6 +165472,8 @@ id: UBERON:0000974 name: neck def: "An organism subdivision that extends from the head to the pectoral girdle, encompassing the cervical vertebral column." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "collum" RELATED OMO:0003011 [Wikipedia:Neck] @@ -165464,6 +165510,8 @@ id: UBERON:0000975 name: sternum def: "A midventral endochondral skeletal element which represents the origin site of the pectoral muscles[PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/67, PHENOSCAPE:ad] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "breastbone" RELATED [BTO:0001302] @@ -165515,6 +165563,8 @@ name: humerus def: "Paired endochondral long bone that extends between the pectoral girdle and the skeletal parts of the forelimb. [PHENOSCAPE:mah]." [AAO:0000679, https://github.com/obophenotype/uberon/issues/106, PHENOSCAPE:mah] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "humeri" EXACT OMO:0003004 [PHENOSCAPE:ad] @@ -165563,6 +165613,8 @@ id: UBERON:0000977 name: pleura def: "The invaginated serous membrane that surrounds the lungs (the visceral portion) and lines the walls of the pleural cavity (parietal portion)." [https://github.com/obophenotype/uberon/issues/1231, ISBN:0-683-40008-8, MP:0010820, UBERON:cjm, Wikipedia:Pulmonary_pleurae] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "pleura" RELATED [] @@ -165607,6 +165659,8 @@ name: leg def: "The portion of the hindlimb that contains both the stylopod and zeugopod." [Wikipedia:Leg#Limb] comment: we use the less open to misinterpretation 'hindlimb zeugopod'. Editor note: currently declared as overlapping foot, as AOs disagree over whether some ankle parts are in the leg or foot subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "lower extremity" RELATED [MESH:A01.378.610] @@ -165638,6 +165692,8 @@ name: tibia def: "The major preaxial endochondral bone in the posterior zeugopod[Phenoscape]." [PHENOSCAPE:mah] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "shankbone" EXACT [Wikipedia:Tibia] @@ -165675,6 +165731,8 @@ property_value: external_definition "One of the two long bones of endochondral o id: UBERON:0000980 name: trochanter def: "A bony prominence near the extremity of the femur that normally serves as attachment points for hip and thigh muscles[MP,modified]." [MP:0004627] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "femoral trochanter" EXACT [AAO:0000897] @@ -165701,6 +165759,8 @@ name: femur def: "Endochondral longbone connecting the pelvic girdle with posterior zeugopodium skeleton.[VSAO, modified]." [VSAO:0000186, Wikipedia:Femur] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "femoral bone" RELATED [BTO:0001284] @@ -165756,6 +165816,8 @@ id: UBERON:0000982 name: skeletal joint def: "Anatomical structure that consists of two or more adjacent skeletal structures, which may be interconnected by various types of tissue[VSAO]." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000101, Wikipedia:Joint] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -165800,6 +165862,8 @@ property_value: external_definition "Anatomical cluster which consists of two or id: UBERON:0000983 name: metatarsus region def: "A metapodium region that is part of a pes." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "hind metapodium" EXACT [AAO:0000221, http://en.wiktionary.org/wiki/metapodial, MA:th] synonym: "hindlimb cannon region" NARROW [http://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] @@ -165847,6 +165911,8 @@ id: UBERON:0000985 name: axillary vein def: "Vein that drains the axilla." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "subcostal vein" RELATED [] synonym: "vena axillaris" EXACT OMO:0003011 [Wikipedia:Axillary_vein] @@ -165894,6 +165960,8 @@ name: pons def: "The part of the central nervous system lying between the medulla oblongata and the midbrain, ventral to the cerebellum." [VHOG:0001176] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "pons cerebri" RELATED OMO:0003011 [NeuroNames:547] @@ -165943,6 +166011,8 @@ id: UBERON:0000989 name: penis def: "An intromittent organ in certain biologically male organisms. In placental mammals, this also serves as the organ of urination." [http://orcid.org/0000-0002-6601-2165, ISBN:0-683-40008-8, MP:0005187, Wikipedia:Penis] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -165984,6 +166054,8 @@ def: "Anatomical system that has as its parts the organs concerned with reproduc subset: efo_slim subset: functional_classification subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -166055,7 +166127,9 @@ property_value: homology_notes "Arguably, one of the most important aspects of u id: UBERON:0000991 name: gonad def: "Reproductive organ that produces and releases eggs (ovary) or sperm (testis)." [ISBN:0140512888, Wikipedia:Gonad, ZFA:0000413, ZFIN:curator] +subset: human_subset subset: major_organ +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -166100,6 +166174,8 @@ name: ovary def: "The gonad of a female organism which contains germ cells." [ISBN:0-683-40008-8, MP:0001126, Wikipedia:Ovary] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -166176,6 +166252,8 @@ id: UBERON:0000993 name: oviduct def: "A tube or collection of tubes in an animal from the ovaries to the outside of the body." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "female reproductive tracts" RELATED [http://orcid.org/0000-0002-6601-2165] @@ -166185,7 +166263,7 @@ synonym: "oviducts" RELATED OMO:0003004 [ZFA:0000560] synonym: "tuba uterina" RELATED [BTO:0000980] synonym: "tuba uterinae" RELATED [BTO:0000980] synonym: "tubular parts of female reproductive system" RELATED [http://orcid.org/0000-0002-6601-2165] -synonym: "uterine tube" EXACT [] +synonym: "uterine tube" NARROW [] xref: AAO:0010533 xref: BSA:0000083 xref: BTO:0000980 @@ -166247,6 +166325,8 @@ name: uterus def: "The female muscular organ of gestation in which the developing embryo or fetus is nourished until birth." [MGI:csmith, MP:0001120] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -166287,6 +166367,8 @@ id: UBERON:0000996 name: vagina def: "A fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Vagina] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "distal oviductal region" RELATED [] @@ -166327,6 +166409,8 @@ id: UBERON:0000997 name: mammalian vulva def: "External genital organs of the female mammal[WP]." [Wikipedia:Vulva] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "female pudendum" EXACT DEPRECATED [BTO:0003101, doi:10.1002/ca.23705, FMA:20462] @@ -166367,6 +166451,8 @@ id: UBERON:0000998 name: seminal vesicle def: "Either of a pair of glandular pouches that lie one on either side of the male reproductive tract posterolateral to the urinary bladder and in the human male secrete a sugar- and protein-containing fluid into the ejaculatory duct." [BTO:0001234, Wikipedia:Seminal_vesicle] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -166415,6 +166501,8 @@ id: UBERON:0000999 name: ejaculatory duct def: "The Ejaculatory ducts (ductus ejaculatorii) are paired structures in male anatomy, about 2 cm in length. Each ejaculatory duct is formed by the union of the vas deferens with the duct of the seminal vesicle. They pass through the prostate, and empty into the urethra at the Colliculus seminalis. During ejaculation, semen passes through the ducts and exits the body via the penis[WP,unvetted]." [Wikipedia:Ejaculatory_duct] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "ductus ejaculatorii" EXACT OMO:0003004 [BTO:0001580] synonym: "ductus ejaculatorii" RELATED OMO:0003011 [Wikipedia:Ejaculatory_duct] @@ -166453,6 +166541,8 @@ id: UBERON:0001000 name: vas deferens def: "A secretory duct that transports sperm from the testis. In mammals this is a continuation of the epididymis and ends in the prostatic urethra where it terminates to form ejaculatory duct." [http://orcid.org/0000-0002-6601-2165, ISBN:0-683-40008-8, MGI:pvb, MP:0002769, Wikipedia:Vas_deferens] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -166524,6 +166614,8 @@ name: cuticle def: "Tough but flexible, non-mineral outer coverings of an organism, or parts of an organism, that provide protection. Cuticles are non-homologous, differing in their origin, structure and chemical composition[WP]." [http://sourceforge.net/tracker/?func=detail&aid=3348965&group_id=36855&atid=440764, Wikipedia:Cuticle] comment: EDITOR_NOTE TODO - check cuticle vs exoskeleton. Note that GO has a very generic definition of cuticle. See also arthropod-anatomy ontology. Note in ncit Cuticle is a plant part subset: grouping_class +subset: human_subset +subset: mouse_subset subset: non_informative subset: uberon_slim synonym: "cuticula" RELATED [BTO:0001600] @@ -166541,6 +166633,8 @@ name: skin epidermis def: "The outer epithelial layer of the skin that is superficial to the dermis." [http://orcid.org/0000-0002-6601-2165, ISBN:0073040584] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -166589,6 +166683,8 @@ def: "Functional system which consists of structures involved in respiration." [ subset: efo_slim subset: functional_classification subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -166653,6 +166749,8 @@ id: UBERON:0001005 name: respiratory airway def: "An airway through which respiratory air passes in organisms." [Wikipedia:Trachea] subset: grouping_class +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "airway" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "airways" BROAD OMO:0003004 [http://orcid.org/0000-0002-6601-2165] @@ -166689,6 +166787,8 @@ name: digestive system def: "Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes." [FB:gg, NLM:alimentary+system, Wikipedia:Digestive_system] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -166747,6 +166847,8 @@ def: "The renal system in an anatomical system that maintains fluid balance and comment: EDITOR_NOTE In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page); we merge two BTO classes here subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -166803,7 +166905,8 @@ property_value: taxon_notes "This definition is inclusive of the organs of the v id: UBERON:0001009 name: circulatory system def: "Organ system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells, etc. to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis[WP]." [Wikipedia:Circulatory_system] -subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "systema cardiovasculare" RELATED OMO:0003011 [Wikipedia:Circulatory_system] xref: AAO:0000959 @@ -166831,7 +166934,6 @@ relationship: in_taxon NCBITaxon:33213 ! Bilateria relationship: never_in_taxon NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"} ! Acoelomorpha relationship: never_in_taxon NCBITaxon:6073 ! Cnidaria relationship: never_in_taxon NCBITaxon:6157 ! Platyhelminthes -relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: curator_notes "the cardiovascular system and the lymphatic system are parts of the circulatory system" xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg" xsd:anyURI property_value: external_definition "Anatomical system of ion binding, a pumping mechanism, and an efficient vascular system; consisting of the blood, heart, and blood and lymph vessels, respectively.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000959", ontology="AAO", source="AAO:BJB"} @@ -166841,6 +166943,8 @@ property_value: homology_notes "We should divest ourselves of the view that earl id: UBERON:0001010 name: diaphysis of ulna def: "The body of the ulna at its upper part is prismatic in form, and curved so as to be convex behind and lateralward; its central part is straight; its lower part is rounded, smooth, and bent a little lateralward. It tapers gradually from above downward, and has three borders and three surfaces." [Wikipedia:Body_of_ulna] +subset: human_subset +subset: mouse_subset synonym: "body of ulna" EXACT [FMA:33760] synonym: "corpus ulnae" EXACT [FMA:33760] synonym: "shaft of ulna" EXACT [FMA:33760] @@ -166879,6 +166983,8 @@ relationship: part_of UBERON:0001009 ! circulatory system id: UBERON:0001012 name: head of radius def: "The head of the radius has a cylindrical form, and on its upper surface is a shallow cup or fovea for articulation with the capitulum (or capitellum) of the humerus. The circumference of the head is smooth; it is broad medially where it articulates with the radial notch of the ulna, narrow in the rest of its extent, which is embraced by the annular ligament. The deepest point in the fovea is not axi-symmetric with the long axis of the radius, creating a cam effect during pronation and supination[WP]." [Wikipedia:Head_of_radius] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "caput radii" RELATED OMO:0003011 [Wikipedia:Head_of_radius] synonym: "radial head" EXACT [FMA:33773] @@ -166899,6 +167005,8 @@ name: adipose tissue def: "Portion of connective tissue composed of adipocytes enmeshed in areolar tissue." [http://orcid.org/0000-0002-6601-2165, MESH:A10.165.114, MGI:cwg, MP:0000003, Wikipedia:Adipose_tissue] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -166958,6 +167066,8 @@ id: UBERON:0001015 name: musculature def: "A subdivision of the muscular system corresponding to a subdisivision of an organism." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Muscular_system] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -166995,6 +167105,8 @@ name: nervous system def: "The nervous system is an organ system containing predominantly neuron and glial cells. In bilaterally symmetrical organism, it is arranged in a network of tree-like structures connected to a central body. The main functions of the nervous system are to regulate and control body functions, and to receive sensory input, process this information, and generate behavior [CUMBO]." [BIRNLEX:844, ISBN:0-14-051288-8, ISBN:3110148986, NLM:nervous+system, WB:rynl, Wikipedia:Nervous_system, ZFIN:curator] subset: cumbo subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -167063,6 +167175,8 @@ def: "The central nervous system is the core nervous system that serves an integ subset: cumbo subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -167117,6 +167231,8 @@ name: axon tract def: "A group of axons linking two or more neuropils and having a common origin, termination[FBbt]." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, https://github.com/obophenotype/uberon/issues/286] comment: WP says this is the analog of peripheral nerves in CNS. subset: cumbo +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "axonal tract" EXACT [] synonym: "nerve tract" NARROW [BIRNLEX:1649] @@ -167139,6 +167255,8 @@ id: UBERON:0001019 name: nerve fasciculus def: "A slender neuron projection bundle[FBbt]; A bundle of anatomical fibers, as of muscle or nerve (American Heritage Dictionary 4th ed)." [BIRNLEX:872, FBbt:00005101] comment: EDITOR_NOTE note FBbt class not disjoint from tract. Consider merging with 'neuron projection bundle' +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "fascicle" BROAD [FBbt:00005101] synonym: "fasciculus" EXACT OMO:0003011 [] @@ -167162,6 +167280,8 @@ name: nervous system commissure def: "Axon tract that crosses the midline of the central nervous system[NIF, modified]. In the context of Drosophila refers to a broad band of axons connecting equivalent neuropils each side of the brain[FBbt]." [https://github.com/obophenotype/uberon/issues/300, https://github.com/obophenotype/uberon/issues/325, NLXANAT:20090513] comment: *not* the same as FMA:76741 Commissure subset: cumbo +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "commissure" BROAD [] synonym: "commissure of neuraxis" EXACT [FMA:83906] @@ -167187,6 +167307,8 @@ id: UBERON:0001021 name: nerve def: "An enclosed, cable-like bundle of axons in the peripheral nervous system originating in a nerve root in the central nervous system (or a condensed nervous structure) connecting with peripheral structures." [FBbt:00005105, http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -167316,6 +167438,8 @@ replaced_by: UBERON:0006798 id: UBERON:0001027 name: sensory nerve def: "A nerve that transmits from sensory receptors on the surface of the body to the central nervous system." [UBERON:cjm, Wikipedia:Sensory_nerve] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "afferent nerve" RELATED [] @@ -167332,6 +167456,8 @@ relationship: has_part CL:0000526 {source="AEO"} ! afferent neuron id: UBERON:0001028 name: diaphysis of radius def: "A diaphysis that is part of a radius bone[Automatically generated definition]." [OBOL:automatic, Wikipedia:Body_of_radius] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "body of radius" EXACT [FMA:33782] synonym: "corpus radii" EXACT [FMA:33782] @@ -167379,6 +167505,8 @@ consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1884931180 id: UBERON:0001031 name: sheath of Schwann def: "The outermost nucleated cytoplasmic layer of Schwann cells that surrounds the axon of the neuron. It forms the outermost layer of the nerve fiber in the peripheral nervous system. The neurolemma is underlain by the basal lamina (referred to as the medullary sheath in the included illustrations. In CNS, axons are myelinated by oligodendrocytes, thus lack neurolemma." [Wikipedia:Neurolemma] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "endoneural membrane" RELATED [BTO:0003048] synonym: "neurilemma" EXACT [FMA:62976] @@ -167404,6 +167532,8 @@ id: UBERON:0001032 name: sensory system def: "Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information." [Wikipedia:Sensory_system] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "organa sensuum" EXACT OMO:0003011 [FMA:75259, FMA:TA] @@ -167445,6 +167575,8 @@ id: UBERON:0001033 name: gustatory system def: "The sensory system for the sense of taste." [NLXANAT:090803] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -167501,6 +167633,8 @@ consider: GAID:778 id: UBERON:0001035 name: dento-alveolar joint def: "A joint that binds the teeth to the alveolar ridge." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Gomphosis] +subset: human_subset +subset: mouse_subset synonym: "dento-alveolar syndesmosis" EXACT [FMA:7495] synonym: "gomphosis" EXACT [MA:0001499] synonym: "peg-and-socket joint" EXACT [FMA:7495] @@ -167525,6 +167659,8 @@ id: UBERON:0001037 name: strand of hair def: "A filament, mostly protein, that grows from follicles found in the dermis[WP]." [Wikipedia:Hair] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "coat hair" RELATED [] @@ -167586,6 +167722,8 @@ id: UBERON:0001040 name: yolk sac def: "A sac-like expansion of the ventral wall of the intestine, narrowed into a yolk stalk near the body[Hyman's]. Membranous sac attached to an embryo, providing early nourishment in the form of yolk in bony fishes, sharks, reptiles, birds, and primitive mammals. It functions as the developmental circulatory system of the human embryo, before internal circulation begins. In the mouse, the yolk sac is the first site of blood formation, generating primitive macrophages and erythrocytes[WP]." [Wikipedia:Yolk_sac] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "saccus vitellinus" RELATED OMO:0003011 [Wikipedia:Yolk_sac] @@ -167621,6 +167759,8 @@ id: UBERON:0001041 name: foregut def: "Anterior subdivision of a digestive tract." [http://orcid.org/0000-0002-6601-2165] subset: developmental_classification +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "praeenteron" RELATED OMO:0003011 [Wikipedia:Foregut] @@ -167653,6 +167793,8 @@ name: chordate pharynx def: "A portion of the respiratory and digestive tracts; its distal limit is the superior part of the esophagus and it connects the nasal and oral cavities with the esophagus and larynx; it contains the valleculae and the pyriform recesses; its upper limits are the nasal cavity and cranial base.[FEED]." [http://www.feedexp.org] comment: Consider generalizing to deuterostome pharynx subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -167701,7 +167843,9 @@ name: esophagus def: "Tube that connects the pharynx to the stomach. In mammals, the oesophagus connects the buccal cavity with the stomach. The stratified squamous non-keratinised epithelium lining the buccal cavity is continued through the pharynx down into the oesophagus. The lowest part of the oesophagus (ca. 2 cm) is lined with gastric mucosa and covered by peritoneum. The main body of the oesophagus is lined with small, simple mucous glands. Each gland opens into the lumen by a long duct which pierces the muscularis mucosae (Wilson and Washington, 1989). A sphincter is situated at the point where the oesophagus enters the stomach to prevent gastro-oesophageal reflux, i.e. to prevent acidic gastric contents from reaching stratified epithelia of the oesophagus, where they can cause inflammation and irritation (Wilson and Washington, 1989; Brown et al., 1993)." [http://www.rivm.nl/interspeciesinfo/inter/oesophagus/, Wikipedia:Esophagus] subset: efo_slim subset: human_reference_atlas +subset: human_subset subset: major_organ +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -167755,6 +167899,8 @@ name: saliva-secreting gland def: "Saliva-secreting exocrine glands of the oral cavity[GO]." [GO:0007431, Wikipedia:Salivary_gland] subset: efo_slim subset: functional_classification +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -167801,6 +167947,8 @@ name: midgut def: "Middle subdivision of a digestive tract[CJM]. In vertebrates: The middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine[GO]." [GO:0007494, Wikipedia:Midgut] subset: developmental_classification subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "mesenteron" RELATED OMO:0003011 [Wikipedia:Midgut] @@ -167834,6 +167982,8 @@ id: UBERON:0001046 name: hindgut def: "The caudalmost subdivision of a digestive tract." [http://orcid.org/0000-0002-6601-2165] subset: developmental_classification +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "metenteron" RELATED OMO:0003011 [Wikipedia:Hindgut] @@ -167867,6 +168017,8 @@ property_value: homology_notes "The bilaterian gut is typically a complete tube id: UBERON:0001047 name: neural glomerulus def: "A large synaptic bouton found in areas like olfactory bulb, cerebellar cortex and thalamus, that contacts many post-synaptic targets." [DOI:10.1016/B978-0-12-374245-2.00007-3, ILX:0728797] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "glomerulus" BROAD [FBbt:00005386] xref: FBbt:00005386 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} @@ -167879,6 +168031,8 @@ id: UBERON:0001048 name: primordium def: "Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue[FBbt, Hartenstein, V. (2004)]." [BTO:0001886, FB:DJS, FB:FBrf0089570, http://flybase.org/reports/FBrf0178740.html] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "bud" RELATED [] @@ -167904,6 +168058,8 @@ relationship: part_of UBERON:0000468 ! multicellular organism id: UBERON:0001049 name: neural tube def: "In the developing vertebrate, the neural tube is the embryo's precursor to the central nervous system, which comprises the brain and spinal cord. The neural groove gradually deepens as the neural folds become elevated, and ultimately the folds meet and coalesce in the middle line and convert the groove into a closed tube, the neural tube or neural canal (which strictly speaking is the center of the neural tube), the ectodermal wall of which forms the rudiment of the nervous system. [WP,unvetted]." [Wikipedia:Neural_tube] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -167956,6 +168112,8 @@ id: UBERON:0001051 name: hypopharynx def: "Bottom part of the pharynx that connects to the esophagus." [Wikipedia:Hypopharynx] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "laryngeal pharynx" EXACT [FMA:54877] @@ -167989,6 +168147,8 @@ name: rectum def: "The terminal portion of the intestinal tube, terminating with the anus." [http://orcid.org/0000-0002-6601-2165, ISBN:0-683-40008-8, MP:0000492] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "intestinum rectum" RELATED [BTO:0001158] @@ -168037,6 +168197,8 @@ name: arthropod neurohemal organ def: "A system of neurons that has the specialized function to produce and secrete hormones, and that constitutes, in whole or in part, an endocrine organ or system." [BTO:0002106] comment: brain areas from which substances enter blood for example, the neurohypophysis from which oxytocin and vasopressin enter blood. subset: efo_slim +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "neurohaemal organ" RELATED [] xref: BTO:0002106 @@ -168162,6 +168324,8 @@ id: UBERON:0001062 name: anatomical entity def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [FMA:62955, http://orcid.org/0000-0001-9114-8737] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: upper_level xref: AAO:0010841 xref: AEO:0000000 @@ -168192,6 +168356,8 @@ relationship: present_in_taxon NCBITaxon:4751 ! Fungi id: UBERON:0001063 name: flocculus def: "The small lobe of the cerebellum at the posterior border of the middle cerebellar peduncle anterior to the biventer lobule that receives input from the inferior and medial vestibular nuclei and sends fibers back to the vestibular nuclei, and processes and integrates these signals to allow for the constant maintenance of balance." [http://orcid.org/0000-0002-6601-2165, ISBN:0838580343, MGI:csmith, MP:0010006, Wikipedia:Flocculus_(cerebellar)] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "flocculus of cerebellum" EXACT [FMA:83881] @@ -168235,6 +168401,8 @@ alt_id: UBERON:0005627 def: "A duct joining the pancreas to the common bile duct to supply pancreatic juices which aid in digestion provided by the exocrine pancreas. The pancreatic duct joins the common bile duct just prior to the ampulla of Vater, after which both ducts perforate the medial side of the second portion of the duodenum at the major duodenal papilla." [Wikipedia:Pancreatic_duct] comment: EDITOR_NOTE in EHDAA2 this is an epithelium, in FMA the wall consists of epithelium and connective tissue subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "canal of Wirsung" RELATED [BTO:0002362] synonym: "chief pancreatic duct" EXACT [FMA:16003] @@ -168274,6 +168442,8 @@ id: UBERON:0001065 name: parotid main excretory duct def: "The main excretory tubular canal that connects the parotid gland and the buccal mucosa and secretes a serous saliva into the vestibule of the oral cavity; it arises from the anterior surface of the gland, traversing the masseter muscle; the duct then pierces the buccinator muscle, moving medially, and opens out into the oral cavity near the second upper molar; saliva produced by acinar secretory cells in the glandular body flows sequentially through the intercalated ducts, striated ducts, and excretory ducts." [MP:0009530] comment: EDITOR_NOTE we follow MP in identifying the 'parotid duct' with the main excretory duct, although in fact the parotid has many other ducts of different types +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "duct of parotid" BROAD [OBOL:automatic] @@ -168310,6 +168480,8 @@ name: intervertebral disk def: "A pad of fibrocartilage between the articular surfaces of two successive vertebral centra which has nucleus pulposus at its core." [ISBN:0073040584, Wikipedia:Intervertebral_disk] comment: whose gel-like core is nucleus puloposus, by this definition only in mammals subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "discus intervertebralis" EXACT OMO:0003011 [FMA:10446, FMA:TA] @@ -168339,6 +168511,8 @@ property_value: taxon_notes "strictly speaking the term intervertebral disk [app id: UBERON:0001067 name: vertebral arch joint def: "A synovial joint between the prezygapophysis of one vertebra and the postzygapophysis of the vertebra directly above it. There are two facet joints in each spinal motion segment[WP]." [Wikipedia:Zygapophysial_joint] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "articulationes zygapophysiales" RELATED OMO:0003011 [Wikipedia:Zygapophysial_joint] @@ -168370,6 +168544,8 @@ id: UBERON:0001068 name: skin of back def: "A zone of skin that is part of a back [Automatically generated definition]." [OBOL:automatic] comment: EDITOR_NOTE TODO - distinguish between entire skin of region and arbitrary zone of skin on region +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "back skin" EXACT [] synonym: "back zone of skin" EXACT [OBOL:automatic] @@ -168391,6 +168567,8 @@ id: UBERON:0001069 name: head of pancreas def: "The head of pancreas is a portion of the pancreas that is lodged within the curve of the duodenum, and is flattened anteriorly (from before). The other parts of the pancreas are the body and the tail. Its upper border is overlapped by the superior part of the duodenum and its lower overlaps the horizontal part; its right and left borders overlap in front, and insinuate themselves behind, the descending and ascending parts of the duodenum respectively. [WP,unvetted]." [Wikipedia:Head_of_pancreas] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "caput pancreatis" RELATED OMO:0003011 [Wikipedia:Head_of_pancreas] synonym: "pancreas head" EXACT [] @@ -168421,6 +168599,8 @@ name: external carotid artery def: "A terminal branch of the left or right common carotid artery which supplies oxygenated blood to to the throat, neck glands, tongue, face, mouth, ear, scalp and dura mater of the meninges[MP]." [MGI:anna] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -168458,6 +168638,8 @@ name: superficial cervical artery def: "It ascends beneath the anterior margin of the trapezius, distributing branches to it, and to the neighboring muscles and lymph glands in the neck, and anastomosing with the superficial branch of the descending branch of the occipital artery." [Wikipedia:Superficial_part_of_transverse_cervical_artery] comment: The transverse cervical artery splits into two branches, a superficial one and a deep one[WP] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "superficial branch of transverse cervical artery" EXACT [Wikipedia:Superficial_part_of_transverse_cervical_artery] xref: EMAPA:37117 {source="MA:th"} @@ -168479,6 +168661,8 @@ id: UBERON:0001072 name: inferior vena cava def: "A vein that carries deoxygenated blood from the lower half of the body into the right atrium of the heart." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Inferior_vena_cava] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "caudal vena cava" RELATED [VHOG:0001194] @@ -168519,6 +168703,8 @@ property_value: homology_notes "Phylogenetic modifications within this basic pat id: UBERON:0001073 name: ileocecal junction def: "A point along the course of the gastrointestinal tract where the small intestine (ileum) ends as it opens into the cecal portion of the large intestine; occurs usually within the iliac fossa, demarcated internally as the ileocecal orifice." [http://www.medilexicon.com/medicaldictionary.php?t=46539] +subset: human_subset +subset: mouse_subset synonym: "ileocaecal junction" EXACT [] xref: EMAPA:37601 {source="MA:th"} xref: FMA:11338 @@ -168537,6 +168723,8 @@ relationship: part_of UBERON:0000160 ! intestine id: UBERON:0001074 name: pericardial cavity def: "A potential space between the visceral and parietal layers of the pericardium." [Wikipedia:Pericardium] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -168574,6 +168762,8 @@ property_value: homology_notes "In hagfishes a transverse septum extends upward id: UBERON:0001075 name: bony vertebral centrum def: "Ossified form of a vertebral centrum, a skeletal element that functionally replaces the notochord[VSAP,modified]." [http://orcid.org/0000-0002-6601-2165, VSAO:0000183, VSAO:curator] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -168616,6 +168806,8 @@ property_value: external_ontology_notes "VSAO definition states it surrounds not id: UBERON:0001076 name: neural spine def: "An extension of a neural arches dorsal to the neural canal[TAO,modified]." [http://orcid.org/0000-0002-6601-2165, TAO:0001336] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -168649,6 +168841,8 @@ property_value: taxon_notes "The spinous process of a vertebra is directed backw id: UBERON:0001077 name: transverse process of vertebra def: "The transverse or costal processes of a vertebra, two in number, project one at either side from the point where the lamina joins the pedicle, between the superior and inferior articular processes. They serve for the attachment of muscles and ligaments. [WP,unvetted]." [Wikipedia:Transverse_process] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "diapophyses" RELATED [] @@ -168671,6 +168865,8 @@ property_value: external_definition "Projections on each side of the vertebra fr id: UBERON:0001078 name: pedicle of vertebra def: "The two short, thick processes, which project backward, one on either side, from the upper part of the body to the laminae." [ISBN:0-683-40008-8, MGI:csmith, MP:0004604] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "pedicle" BROAD [] @@ -168695,6 +168891,8 @@ id: UBERON:0001079 name: prezygapophysis def: "Paired processes at the cephalic end of the neural arch. The articular facets of the prezygapophyses face dorsomedially and articulate with the lateroventrally facing facets of the postzygapophyses of the preceding vertebra." [AAO:Pugener_and_Maglia_2008] comment: EDITOR_NOTE TODO - add distinct classes for hemal vs neural? +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "cranial articular process of vertebra" EXACT [] synonym: "neural prezygapophyses" RELATED OMO:0003004 [TAO:0001325] @@ -168722,6 +168920,8 @@ id: UBERON:0001080 name: postzygapophysis def: "Paired processes at the caudal end of the neural arch. The articular facets of the postzygapophyses face lateroventrally and articulate with the dorsomedially facing facets of the prezygapophyses of the succeeding vertebra." [AAO:LAP] comment: Posteriorly projecting processes allowing de facto contact between consecutive vertebrae (some soft tissues are also present) via articular facets. [PHENOSCAPE:NI] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "caudal articular process of vertebra" EXACT [] @@ -168750,6 +168950,8 @@ property_value: external_definition "Paired, dorsomedially directed processes on id: UBERON:0001081 name: endocardium of ventricle def: "Endocardium that is part of the cardiac ventricle." [ZFIN:curator] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "cardiac ventricle endocardium" EXACT [OBOL:automatic] @@ -168784,6 +168986,8 @@ relationship: part_of UBERON:0004784 {source="https://github.com/obophenotype/ub id: UBERON:0001082 name: epicardium of ventricle def: "An epicardial layer that lines a cardiac ventricle." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "cardiac ventricle epicardium" EXACT [OBOL:automatic] synonym: "ventricular epicardium" EXACT [] @@ -168801,6 +169005,8 @@ id: UBERON:0001083 name: myocardium of ventricle def: "Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer." [ZFIN:curator] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "ventricle cardiac muscle" RELATED [VHOG:0000604] @@ -168828,6 +169034,8 @@ id: UBERON:0001084 name: skin of head def: "A zone of skin that is part of a head [Automatically generated definition]." [OBOL:automatic] comment: EDITOR_NOTE TODO - distinguish between entire skin of region and arbitrary zone of skin on region +subset: human_subset +subset: mouse_subset synonym: "adult head zone of skin" EXACT [OBOL:automatic] synonym: "head skin" EXACT [] synonym: "head zone of skin" EXACT [OBOL:automatic] @@ -168849,6 +169057,8 @@ id: UBERON:0001085 name: skin of trunk def: "A zone of skin that is part of a trunk [Automatically generated definition]." [OBOL:automatic] comment: EDITOR_NOTE TODO - distinguish between entire skin of region and arbitrary zone of skin on region +subset: human_subset +subset: mouse_subset synonym: "torso zone of skin" EXACT [OBOL:automatic] synonym: "trunk skin" EXACT [] synonym: "trunk zone of skin" EXACT [OBOL:automatic] @@ -168878,6 +169088,8 @@ consider: UBERON:0011002 id: UBERON:0001087 name: pleural fluid def: "Transudate contained in the pleural cavity." [FMA:12273] +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: BTO:0003080 xref: FMA:12273 @@ -168895,6 +169107,8 @@ id: UBERON:0001088 name: urine def: "Excretion that is the output of a kidney." [https://github.com/geneontology/go-ontology/issues/11025, Wikipedia:Urine] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: BTO:0001419 @@ -168923,6 +169137,8 @@ property_value: taxon_notes "kidney excreta from some taxa (e.g. in aves) may no id: UBERON:0001089 name: sweat def: "Secretion produced by a sweat gland." [FMA:12275] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "skin exudate" RELATED [BTO:0001254] @@ -168946,6 +169162,8 @@ relationship: produced_by UBERON:0001820 ! sweat gland id: UBERON:0001090 name: synovial fluid def: "Joint fluid is a transudate of plasma that is actively secreted by synovial cells." [https://www.ncbi.nlm.nih.gov/books/NBK274/] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "joint fluid" EXACT [https://www.ncbi.nlm.nih.gov/books/NBK274/] @@ -168979,6 +169197,8 @@ name: calcareous tooth def: "Skeletal element within the mouth (or in some species, upper part of the digestive tract) that is composed of dentine and is used in procuring or masticating food." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Tooth_(animal)] comment: EDITOR_NOTE we place ZFA ctb 5 tooth here for now. Consider changing name from calcaeeous tooth. Note that sea cucumbers develop calcareous tooth-like structures subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -169031,6 +169251,8 @@ id: UBERON:0001092 name: vertebral bone 1 def: "The first vertebral bone in the vertebral column." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -169071,6 +169293,8 @@ id: UBERON:0001093 name: vertebral bone 2 def: "The second vertebral bone in the vertebral column." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -169111,6 +169335,8 @@ name: sacral vertebra def: "A vertebra bone that is part of the sacral region of the vertebral column." [http://orcid.org/0000-0002-6601-2165] comment: EDITOR_NOTE todo - AAO placement to be confirmed by AAO curators (the AAO class may also include modified ribs) subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "sacral segment" EXACT [] @@ -169144,6 +169370,8 @@ alt_id: UBERON:0006070 def: "Any vertebral bone that is part of the caudal region of the vertebral column (tail or coccyx)." [http://orcid.org/0000-0002-6601-2165] comment: Taxon notes In zebrafish, Vertebra bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -169182,6 +169410,8 @@ property_value: external_ontology_notes "we deliberately merge the MA classes as id: UBERON:0001096 name: wall of esophagus def: "An anatomical wall that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anatomical wall of esophagus" EXACT [OBOL:automatic] synonym: "anatomical wall of gullet" EXACT [OBOL:automatic] synonym: "anatomical wall of oesophagus" EXACT [OBOL:automatic] @@ -169206,6 +169436,8 @@ relationship: part_of UBERON:0001043 ! esophagus id: UBERON:0001097 name: axillary lymph node def: "The lymph nodes located around the axillary vein that receive lymphatic drainage from the upper or forelimb, scapular region and pectoral region." [ISBN:0-683-40008-8, MP:0002340] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "axillary node" EXACT [] @@ -169225,6 +169457,8 @@ id: UBERON:0001098 name: incisor tooth def: "Incisors are the first kind of tooth in heterodont mammals. They are located in the premaxilla above and mandible below. [WP,unvetted]." [https://github.com/obophenotype/uberon/issues/221, Wikipedia:Incisor_tooth] comment: Humans normally have eight (8) incisors; Among other animals, some other primates, cats and horses have twelve. Rodents have four, while Foxes have nine. Rabbits and hares (lagomorphs) were once considered rodents, but are distinguished by having eight - one small pair, called 'peg teeth', is located directly behind the most anterior pair. Incisors are used to bite off tough foods, such as red meat +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "incisor" EXACT [MA:0000349] @@ -169251,6 +169485,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4c/Gr id: UBERON:0001099 name: subcostal vein def: "A vein that runs along the bottom of the lowest rib. Each subcostal vein gives off a posterior (dorsal) branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,modified]." [Wikipedia:Subcostal_vein] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "vena subcostalis" RELATED OMO:0003011 [Wikipedia:Subcostal_vein] xref: EMAPA:37189 {source="MA:th"} @@ -169268,6 +169504,8 @@ id: UBERON:0001100 name: pectoralis minor def: "The Pectoralis minor is a thin, triangular muscle, situated at the upper part of the chest, beneath the Pectoralis major. [WP,unvetted]." [Wikipedia:Pectoralis_minor_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -169296,6 +169534,8 @@ id: UBERON:0001101 name: external jugular vein def: "The external jugular vein receives the greater part of the blood from the exterior of the cranium and the deep parts of the face, being formed by the junction of the posterior division of the posterior facial with the posterior auricular vein. [WP,unvetted]." [Wikipedia:External_jugular_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "external jugular" RELATED [EHDAA2:0000468] synonym: "external jugular venous tree" EXACT [] @@ -169322,6 +169562,8 @@ property_value: external_definition "Vein which collects blood from the muscles id: UBERON:0001102 name: cartilage of main bronchus def: "A cartilage that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchus principalis cartilage" EXACT [OBOL:automatic] synonym: "cartilage of bronchus principalis" EXACT [OBOL:automatic] synonym: "cartilage of primary bronchus" EXACT [OBOL:automatic] @@ -169344,6 +169586,8 @@ id: UBERON:0001103 name: diaphragm def: "A thin musculomebranous barrier that separates the abdominal and thoracic cavities. Often used for breathing control." [MP:0002279] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -169392,6 +169636,8 @@ id: UBERON:0001104 name: anterior jugular vein def: "The anterior jugular vein begins near the hyoid bone by the confluence of several superficial veins from the submaxillary region. It descends between the median line and the anterior border of the Sternocleidomastoideus, and, at the lower part of the neck, passes beneath that muscle to open into the termination of the external jugular, or, in some instances, into the subclavian vein. It varies considerably in size, bearing usually an inverse proportion to the external jugular; most frequently there are two anterior jugulars, a right and left; but sometimes only one. Its tributaries are some laryngeal veins, and occasionally a small thyroid vein. Just above the sternum the two anterior jugular veins communicate by a transverse trunk, the venous jugular arch, which receive tributaries from the inferior thyroid veins; each also communicates with the internal jugular. There are no valves in this vein. [WP,unvetted]." [Wikipedia:Anterior_jugular_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "anterior external jugular vein" EXACT [] synonym: "vena jugularis anterior" RELATED OMO:0003011 [Wikipedia:Anterior_jugular_vein] @@ -169414,6 +169660,8 @@ id: UBERON:0001105 name: clavicle bone def: "A paired dermal or endochondral bone that is part of the pectoral girdle. The clavicle may be in contact with the interclavicle or coracoid and forms an attachment site for pectoral musculature. [PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/103, PHENOSCAPE:ad] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "clavicle" EXACT [VSAO:0005031] @@ -169461,6 +169709,8 @@ id: UBERON:0001106 name: cephalic vein def: "A superficial vein of the upper limb that communicates with the basilic vein via the median cubital vein at the elbow and is located in the superficial fascia along the anterolateral surface of the biceps brachii muscle. Superiorly the cephalic vein passes between the deltoid and pectoralis major muscles and through the deltopectoral triangle, where it empties into the axillary vein. It is often visible through the skin, and its location in the deltopectoral groove is fairly consistent, making this site a good candidate for cannulation. It is often referred to as the 'House-man's Friend' for this reason and is generally a good place for cannulaton when a large bore cannula needs to be sited. [WP,modified]." [Wikipedia:Cephalic_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "cephalic vein of forearm" EXACT [] synonym: "vena cephalica" RELATED OMO:0003011 [Wikipedia:Cephalic_vein] @@ -169486,6 +169736,8 @@ id: UBERON:0001107 name: sternohyoid muscle def: "The sternohyoid muscle is a thin, narrow muscle attaching the hyoid bone to the sternum, one of the paired strap muscles of the infrahyoid muscles serving to depress the hyoid bone. It is innervated by the ansa cervicalis. The muscle arises from the posterior border of the medial end of the clavicle, the posterior sternoclavicular ligament, and the upper and posterior part of the manubrium sterni. Passing upward and medially, it is inserted by short tendinous fibers into the lower border of the body of the hyoid bone. [WP,unvetted]." [Wikipedia:Sternohyoid_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "m. sternohyoideus" EXACT [] @@ -169518,6 +169770,8 @@ name: omohyoid muscle def: "The omohyoid muscle is a muscle at the front of the neck that consists of two bellies separated by an intermediate tendon. It belongs to the group of infrahyoid muscles. [WP,unvetted]." [Wikipedia:Omohyoid_muscle] comment: interior and superior belly subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus omohyoideus" RELATED OMO:0003011 [Wikipedia:Omohyoid_muscle] synonym: "omohyoid" EXACT [] @@ -169543,6 +169797,8 @@ id: UBERON:0001109 name: sternothyroid muscle def: "The Sternothyreoideus (or Sternothyroid muscle) is shorter and wider than the Sternohyoideus, beneath which it is situated. It arises from the posterior surface of the manubrium sterni, below the origin of the Sternohyoideus, and from the edge of the cartilage of the first rib, and sometimes that of the second rib, it is inserted into the oblique line on the lamina of the thyroid cartilage. This muscle is in close contact with its fellow at the lower part of the neck, but diverges somewhat as it ascends; it is occasionally traversed by a transverse or oblique tendinous inscription. [WP,unvetted]." [Wikipedia:Sternothyroid_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus sternothyroideus" RELATED OMO:0003011 [Wikipedia:Sternothyroid_muscle] synonym: "sterno-thyroideus" RELATED [Wikipedia:Sternothyroid_muscle] @@ -169572,6 +169828,8 @@ id: UBERON:0001110 name: thyrohyoid muscle def: "The thyrohyoid muscle is a small, quadrilateral muscle appearing like an upward continuation of the Sternothyreoideus. It belongs to the infrahyoid muscles group. It arises from the oblique line on the lamina of the thyroid cartilage, and is inserted into the lower border of the greater cornu of the hyoid bone. [WP,unvetted]." [Wikipedia:Thyrohyoid_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus thyrohyoideus" RELATED OMO:0003011 [Wikipedia:Thyrohyoid_muscle] synonym: "thyreohyoideus" RELATED [Wikipedia:Thyrohyoid_muscle] @@ -169598,6 +169856,8 @@ id: UBERON:0001111 name: intercostal muscle def: "The respiratory muscles that arise from the lower border of one rib and insert into the upper border of the adjoining rib." [MESH:A02.633.567.900.500, MGI:csmith, MP:0002280] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "intercostales" RELATED [] @@ -169642,6 +169902,8 @@ def: "The latissimus dorsi is the larger, flat, dorso-lateral muscle on the trun comment: Dorsal group[Kardong] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "dorsal latissimus muscle" EXACT [] @@ -169678,6 +169940,8 @@ property_value: taxon_notes "In humans it inserts along a roughened line deep in id: UBERON:0001113 name: lobe of liver def: "Traditional gross anatomy divided the liver into four lobes based on surface features. The falciform ligament is visible on the front (anterior side) of the liver. This divides the liver into a left anatomical lobe, and a right anatomical lobe." [Wikipedia:Liver#Lobes] +subset: human_subset +subset: mouse_subset synonym: "hepatic lobe" EXACT [] synonym: "liver lobe" EXACT [] synonym: "lobus hepatis" EXACT [] @@ -169697,6 +169961,8 @@ property_value: editor_note "some work needs to be done to ensure the child term id: UBERON:0001114 name: right lobe of liver def: "The right lobe is much larger than the left; the proportion between them being as six to one. It occupies the right hypochondrium, and is separated from the left lobe on its upper surface by the falciform ligament; on its under and posterior surfaces by the left sagittal fossa; and in front by the umbilical notch. It is of a somewhat quadrilateral form, its under and posterior surfaces being marked by three fossæ: the porta and the fossæ for the gall-bladder and inferior vena cava, which separate its left part into two smaller lobes; the quadrate and caudate lobes. [WP,unvetted]." [Wikipedia:Right_lobe_of_liver] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "2nd lobe" RELATED [TAO:0005173] @@ -169729,6 +169995,8 @@ property_value: external_definition "Portion of the liver which develops on the id: UBERON:0001115 name: left lobe of liver def: "The left lobe is smaller and more flattened than the right. It is situated in the epigastric and left hypochondriac regions. Its upper surface is slightly convex and is moulded on to the diaphragm; its under surface presents the gastric impression and omental tuberosity. [WP,unvetted]." [Wikipedia:Left_lobe_of_liver] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "left hepatic lobe" RELATED [EMAPA:18307] @@ -169758,6 +170026,8 @@ property_value: external_definition "Portion of the liver which develops on the id: UBERON:0001116 name: quadrate lobe of liver def: "The quadrate lobe is an area of the liver situated on the under surface of the right lobe, bounded in front by the anterior margin of the liver; behind by the porta hepatis; on the right, by the fossa for the gall-bladder; and on the left, by the fossa for the umbilical vein. It is oblong in shape, its antero-posterior diameter being greater than its transverse. [WP,unvetted]." [Wikipedia:Quadrate_lobe_of_liver] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "liver quadrate lobe" EXACT [] synonym: "lobus quadratus" EXACT [] @@ -169782,6 +170052,8 @@ property_value: external_definition "The portion of the right lobe of the liver id: UBERON:0001117 name: caudate lobe of liver def: "The caudate lobe (posterior hepatic segment I, Spigelian lobe) is situated upon the postero-superior surface of the liver on the right lobe of the liver, opposite the tenth and eleventh thoracic vertebrae. It is bounded on the left side by the physiological division of the liver called the ligamentum venosum. It is bounded, below, by the porta; on the right, by the fossa for the inferior vena cava; and, on the left, by the fossa for the ductus venosus. It looks backward, being nearly vertical in position; it is longer from above downward than from side to side, and is somewhat concave in the transverse direction. The caudate process is a small elevation of the hepatic substance extending obliquely and laterally, from the lower extremity of the caudate lobe to the under surface of the right lobe. It is situated behind the porta, and separates the fossa for the gall-bladder from the commencement of the fossa for the inferior vena cava. Budd-Chiari syndrome, caused by occlusion of hepatic venous outflow, can lead to hypertrophy of the caudate lobe due to its own caval anastomosis that allows for continued function of this lobe of the liver. [WP,unvetted]." [Wikipedia:Caudate_lobe_of_liver] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "couinaud hepatic segment I" EXACT [FMA:13365] synonym: "hepatovenous segment I" EXACT [] @@ -169822,6 +170094,8 @@ id: UBERON:0001118 name: lobe of thyroid gland def: "A lobe of tissue that is part of a thyroid gland." [http://orcid.org/0000-0002-6601-2165] comment: The lobes of the thyroid gland are conical in shape, the apex of each being directed upward and lateralward as far as the junction of the middle with the lower third of the thyroid cartilage; the base looks downward, and is on a level with the fifth or sixth tracheal ring. Each lobe is about 5 cm. long; its greatest width is about 3 cm. , and its thickness about 2 cm. The lateral or superficial surface is convex, and covered by the skin, the superficial and deep fasciæ, the Sternocleidomastoideus, the superior belly of the Omohyoideus, the Sternohyoideus and Sternothyreoideus, and beneath the last muscle by the pretracheal layer of the deep fascia, which forms a capsule for the gland. The deep or medial surface is moulded over the underlying structures, viz. , the thyroid and cricoid cartilages, the trachea, the Constrictor pharyngis inferior and posterior part of the Cricothyreoideus, the esophagus (particularly on the left side of the neck), the superior and inferior thyroid arteries, and the recurrent nerves. The anterior border is thin, and inclines obliquely from above downward toward the middle line of the neck, while the posterior border is thick and overlaps the common carotid artery, and, as a rule, the parathyroids +subset: human_subset +subset: mouse_subset synonym: "lobuli glandulae thyroideae" RELATED OMO:0003011 [Wikipedia:Lobes_of_thyroid_gland] synonym: "lobus (glandula thyroidea)" EXACT [] synonym: "lobus glandulae thyroideae" EXACT OMO:0003011 [FMA:13367, FMA:TA] @@ -169850,6 +170124,8 @@ property_value: homology_notes "Thus, a thyroid capable of forming iodotyrosines id: UBERON:0001119 name: right lobe of thyroid gland def: "A lobe of thyroid gland that is in the right side of a thyroid gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lobus dexter (glandula thyroidea)" EXACT [] synonym: "right thyroid lobe" EXACT [] synonym: "thyroid gland right lobe" EXACT [] @@ -169872,6 +170148,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0001120 name: left lobe of thyroid gland def: "A lobe of thyroid gland that is in the left side of a thyroid gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left thyroid lobe" EXACT [] synonym: "lobus sinister (glandula thyroidea)" EXACT [] synonym: "thyroid gland left lobe" EXACT [] @@ -169894,6 +170172,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0001121 name: longus colli muscle def: "The Longus colli muscle is a muscle of the human body. The Longus colli is situated on the anterior surface of the vertebral column, between the atlas and the third thoracic vertebra. It is broad in the middle, narrow and pointed at either end, and consists of three portions, a superior oblique, an inferior oblique, and a vertical. The superior oblique portion arises from the anterior tubercles of the transverse processes of the third, fourth, and fifth cervical vertebræ and, ascending obliquely with a medial inclination, is inserted by a narrow tendon into the tubercle on the anterior arch of the atlas. The inferior oblique portion, the smallest part of the muscle, arises from the front of the bodies of the first two or three thoracic vertebræ; and, ascending obliquely in a lateral direction, is inserted into the anterior tubercles of the transverse processes of the fifth and sixth cervical vertebræ. The vertical portion arises, below, from the front of the bodies of the upper three thoracic and lower three cervical vertebræ, and is inserted into the front of the bodies of the second, third, and fourth cervical vertebræ. [WP,unvetted]." [Wikipedia:Longus_colli_muscle] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: uberon_slim synonym: "longi colli" RELATED [Wikipedia:Longus_colli_muscle] @@ -169920,6 +170200,8 @@ id: UBERON:0001122 name: scalenus medius def: "The Scalenus medius, the largest and longest of the three scalene muscles, arises from the posterior tubercles of the transverse processes of the lower six cervical vertebræ. It descendes along the side of the vertebral column to insert by a broad attachment into the upper surface of the first rib, between the tubercle and the subclavian groove. The brachial plexus and the subclavian artery pass anterior to it. Because it elevates the upper ribs, the middle scalene muscle is also one of the accessory muscles of respiration. [WP,unvetted]." [Wikipedia:Scalenus_medius] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "medial scalene muscle" EXACT [] synonym: "middle scalene" EXACT [] @@ -169945,6 +170227,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/f/fa/S id: UBERON:0001123 name: scalenus posterior def: "The Scalenus posterior (Scalenus posticus), the smallest and most deeply seated of the three Scaleni, arises, by two or three separate tendons, from the posterior tubercles of the transverse processes of the lower two or three cervical vertebræ, and is inserted by a thin tendon into the outer surface of the second rib, behind the attachment of the serratus ventralis. It is occasionally blended with the Scalenus medius. [WP,unvetted]." [Wikipedia:Scalenus_posterior] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus scalenus posterior" EXACT OMO:0003011 [FMA:13387, FMA:TA] synonym: "musculus scalenus posterior" RELATED OMO:0003011 [Wikipedia:Scalenus_posterior] @@ -169968,6 +170252,8 @@ id: UBERON:0001125 name: serratus ventralis def: "The serratus ventralis is a muscle that originates on the surface of the upper eight or nine ribs at the side of the chest and inserts along the entire anterior length of the medial border of the scapula. [WP,unvetted]." [Wikipedia:Serratus_anterior_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "Boxer's muscle" EXACT [] @@ -170000,6 +170286,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/c6/S id: UBERON:0001126 name: serratus dorsalis superior muscle def: "The serratus dorsalis superior is a thin, quadrilateral muscle, situated at the upper and back part of the thorax. It arises by a thin and broad aponeurosis from the lower part of the ligamentum nuchae, from the spinous processes of the seventh cervical and upper two or three thoracic vertebræ and from the supraspinal ligament. Inclining downward and lateralward it becomes muscular, and is inserted, by four fleshy digitations, into the upper borders of the second, third, fourth, and fifth ribs, a little beyond their angles. [WP,unvetted]." [Wikipedia:Serratus_posterior_superior_muscle] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "serratus dorsalis cranialis" EXACT [MA:0002377] synonym: "serratus dorsalis cranialis muscle" EXACT [] @@ -170025,6 +170313,8 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk id: UBERON:0001127 name: serratus dorsalis inferior muscle def: "A muscle that originates from the vertebrae and inserts in the ribs." [Wikipedia:Serratus_posterior_inferior_muscle] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "inferior serratus dorsalis" EXACT [] synonym: "inferior serratus posterior" EXACT [FMA:13402] @@ -170050,6 +170340,8 @@ id: UBERON:0001128 name: sternocleidomastoid def: "A paired muscle in the superficial layers of the anterior portion of the neck. It acts to flex and rotate the head. It also acts as an accessory muscle of inspiration, along with the scalene muscles of the neck. [WP,unvetted]." [Wikipedia:Sternocleidomastoid_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus sternocleidomastoideus" RELATED OMO:0003011 [Wikipedia:Sternocleidomastoid_muscle] synonym: "SCM" BROAD OMO:0003000 [] @@ -170097,6 +170389,8 @@ name: subscapularis muscle def: "The subscapularis is a large triangular muscle which fills the subscapular fossa and inserts into the lesser tubercle of the humerus and the front of the capsule of the shoulder-joint. [WP,unvetted]." [Wikipedia:Subscapularis_muscle] comment: Dorsal group[Kardong]; Note from cmungall "we changed the attachment site to be the scapula (for technical reasons), put it's in the fossa, see https://github.com/obophenotype/uberon/issues/1455" subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus subscapularis" RELATED OMO:0003011 [Wikipedia:Subscapularis_muscle] synonym: "subcoracoscapularis" RELATED SENSU [ISBN:0073040584] @@ -170130,6 +170424,8 @@ name: vertebral column def: "Subdivision of skeletal system that consists of all the vertebra and associated skeletal elements and joints in the body[modified from VSAO]." [https://orcid.org/0000-0002-6601-2165, https://sourceforge.net/tracker/?func=detail&aid=3530322&group_id=76834&atid=2257941, VSAO:0000185] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -170182,6 +170478,8 @@ property_value: homology_notes "Vertebrata is characterized by three synapomorph id: UBERON:0001131 name: vertebral foramen def: "A foramen within a vertebral element through which the spinal cord runs. It is formed by the anterior segment, and the posterior part, the vertebral arch." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Vertebral_foramen] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "foramen vertebrale" RELATED OMO:0003011 [Wikipedia:Vertebral_foramen] synonym: "vertebra neural canal" EXACT [] @@ -170206,6 +170504,8 @@ property_value: external_definition "Opening on the vertebra for a spinal nerve id: UBERON:0001132 name: parathyroid gland def: "The parathyroid gland is an endocrine gland for secretion of parathyroid hormone, usually found as a pair, embedded in the connective tissue capsule on the posterior surface of the thyroid gland. Parathyroid regulates calcium and phosphorous metabolism." [ISBN:0-683-40008-8, MP:0000678, Wikipedia:Parathyroid_gland] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -170258,6 +170558,8 @@ id: UBERON:0001133 name: cardiac muscle tissue alt_id: UBERON:0007096 def: "Muscle tissue composed of cardiac muscle cells, forming the muscles of the heart[ZFA,modified]." [ZFA:0005280] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -170310,6 +170612,8 @@ property_value: editor_note "check relationship with myocardium. part_of in MA - id: UBERON:0001134 name: skeletal muscle tissue def: "Muscle tissue that consists primarily of skeletal muscle fibers." [https://github.com/obophenotype/uberon/issues/324] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -170344,6 +170648,8 @@ id: UBERON:0001135 name: smooth muscle tissue def: "Muscle tissue which is unstriated, composed primarily of smooth muscle fibers surrounded by a reticulum of collagen and elastic fibers. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length[GO]." [GO:0006939, Wikipedia:Smooth_muscle_tissue] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -170395,6 +170701,8 @@ property_value: terminology_notes "GO uses visceral and smooth interchangeably. id: UBERON:0001136 name: mesothelium def: "Simple squamous epithelium of mesodermal origin which lines serous membranes. Examples: mesothelium of pleura, mesothelium of peritoneum[FMA]. Wikipedia: The mesothelium is a membrane that forms the lining of several body cavities: the pleura (thoracal cavity), peritoneum (abdominal cavity including the mesentery) and pericardium (heart sac). Mesothelial tissue also surrounds the male internal reproductive organs (the tunica vaginalis testis) and covers the internal reproductive organs of women (the tunica serosa uteri)." [FMA:14074, Wikipedia:Mesothelium] +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: AEO:0000111 xref: BTO:0002422 @@ -170428,6 +170736,8 @@ id: UBERON:0001137 name: dorsum def: "A major subdivision of an organism that is the entire part of the organism dorsal to a horizontal plane and bounded on one side by the same transverse plane. In vertebrares this includes the vertebral column.." [BSPO:0000063, UBERONREF:0000006, Wikipedia:Dorsum_(anatomy)] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "back" EXACT [FMA:14181] synonym: "back of body proper" EXACT [FMA:14181] @@ -170454,6 +170764,8 @@ id: UBERON:0001138 name: superior mesenteric vein def: "In anatomy, the superior mesenteric vein (SMV) is a blood vessel that drains blood from the small intestine. At its termination behind the neck of the pancreas, the SMV combines with the splenic vein to form the hepatic portal vein. The SMV lies to the right of the similarly named artery, the superior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]." [Wikipedia:Superior_mesenteric_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "upper mesenteric vein" RELATED [BTO:0002783] synonym: "vena mesenterica superior" RELATED OMO:0003011 [Wikipedia:Superior_mesenteric_vein] @@ -170484,6 +170796,8 @@ id: UBERON:0001139 name: common iliac vein def: "A vein that drains the pelvis and lower limbs into the inferior vena cava." [MURDOCH:403, Wikipedia:Common_iliac_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "common iliac venous tree" EXACT [] synonym: "vena iliaca communis" RELATED OMO:0003011 [Wikipedia:Common_iliac_vein] @@ -170511,6 +170825,8 @@ id: UBERON:0001140 name: renal vein def: "Either of the pair of major vessels which arise from the renal hilus and return blood from the kidneys, suprarenal gland and the ureter to the inferior vena cava." [ISBN:0-683-40008-8, MGI:csmith, MP:0011323] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "kidney vein" EXACT [OBOL:automatic] @@ -170548,6 +170864,8 @@ id: UBERON:0001141 name: right renal vein def: "A renal vein that drains the right kidney." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37381 {source="MA:th"} xref: FMA:14335 @@ -170569,6 +170887,8 @@ id: UBERON:0001142 name: left renal vein def: "A renal vein that drains the left kidney." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37166 {source="MA:th"} xref: FMA:14336 @@ -170590,6 +170910,8 @@ property_value: external_definition "A vein that drains blood from the left kidn id: UBERON:0001143 name: hepatic vein def: "Vein that carries blood away from the liver[ZFA]." [https://sourceforge.net/tracker/?func=detail&aid=3565355&group_id=76834&atid=1205376, Wikipedia:Hepatic_vein, ZFA:0000670] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -170629,6 +170951,8 @@ property_value: editor_note "todo - add developmental relationships for other ta id: UBERON:0001144 name: testicular vein def: "A vein that carries deoxygenated blood from a single male gonad. It is the male equivalent of the ovarian vein, and is the venous counterpart of the testicular artery. It is a paired vein, with one supplying each testis." [http://orcid.org/0000-0002-6601-2165, https://sourceforge.net/tracker/?func=detail&aid=3220553&group_id=76834&atid=1205376, Wikipedia:Testicular_vein] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "male gonadal vein" EXACT [Wikipedia:Testicular_vein] synonym: "spermatic vein" EXACT [Wikipedia:Testicular_vein] @@ -170666,6 +170990,8 @@ property_value: taxon_notes "In humans, the right testicular vein generally join id: UBERON:0001145 name: ovarian vein def: "A vein that carries deoxygenated blood from its corresponding ovary to inferior vena cava or one of its tributaries." [Wikipedia:Ovarian_vein] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "female reproductive system gonad vein" EXACT [OBOL:automatic] synonym: "female reproductive system gonada vein" EXACT [OBOL:automatic] @@ -170699,6 +171025,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/cf/Ov id: UBERON:0001146 name: suprarenal vein def: "A vein that drains the adrenal gland." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/mouse-anatomy-ontology/issues/110] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "adrenal vein" RELATED [MA:0002081] xref: EHDAA2:0001966 @@ -170723,6 +171051,8 @@ name: median nerve def: "A nerve of the arm that originates from the brachial plexus and is formed from parts of the medial and lateral cords of the brachial plexus, and continues down the arm to enter the forearm with the brachial artery. It originates from the brachial plexus with roots from C5, C6, C7, C8 & T1." [Wikipedia:Median_nerve] comment: The median nerve is the only nerve that passes through the carpal tunnel, where it may be compressed to cause carpal tunnel syndrome. [WP] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nervus medianus" RELATED OMO:0003011 [Wikipedia:Median_nerve] xref: EHDAA2:0001086 @@ -170747,6 +171077,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a7/Ne id: UBERON:0001149 name: bare area of liver def: "A large triangular surface of the liver devoid of peritoneal covering." [Wikipedia:Bare_area_of_the_liver] +subset: human_subset +subset: mouse_subset synonym: "area nuda" RELATED [Wikipedia:Bare_area_of_the_liver] synonym: "area nuda (hepar)" EXACT [] synonym: "area nuda hepatis" EXACT [] @@ -170768,6 +171100,8 @@ id: UBERON:0001150 name: body of pancreas def: "The body of the pancreas is a subsection of the pancreas organ in the human body. It is somewhat prismatic in shape, and has three surfaces: anterior, posterior, and inferior. It is at the same level as the transpyloric plane. [WP,unvetted]." [Wikipedia:Body_of_pancreas] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "corpus pancreatis" RELATED OMO:0003011 [Wikipedia:Body_of_pancreas] synonym: "pancreas body" EXACT [] @@ -170796,6 +171130,8 @@ id: UBERON:0001151 name: tail of pancreas def: "The tail of the pancreas, located anatomically left near the hilum of the spleen, is not simply an anatomical distinction. The tail is the only part of the pancreas which contains Pancreatic Polypeptide (PP) cells, which are responsible for secreting pancreatic polypeptide to coordinate exocrine and islet enzyme release. PP cells are found in the tail's periphery. Beta cells and delta cells are found in the central part of the tail as with the rest of the pancreas. The cells described above are located exclusively in the islet cells; their secretions reach exocrine portions of the pancreas via the capillary network surrounding the islet cell populations. [WP,unvetted]." [Wikipedia:Tail_of_pancreas] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "cauda pancreatis" RELATED OMO:0003011 [Wikipedia:Tail_of_pancreas] synonym: "left extremity of pancreas" EXACT [FMA:14519] @@ -170824,6 +171160,8 @@ property_value: homology_notes "Hagfish and lampreys may have one or more endocr id: UBERON:0001152 name: cystic duct def: "The tubular structure that conducts gall bladder contents from the gall bladder to the common bile duct." [ISBN:0-683-40008-8, MP:0009493] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -170866,6 +171204,8 @@ def: "A pouch in the digestive tract that connects the ileum with the ascending comment: Taxon notes: in some herbivorous lizards, a cecum is present between small and large intestines[Kardong] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "blind intestine" RELATED [BTO:0000166] @@ -170916,6 +171256,8 @@ name: vermiform appendix def: "A blind-ended tube connected to the cecum, from which it develops embryologically[WP]." [https://orcid.org/0000-0002-6826-8770, Wikipedia:Vermiform_appendix] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: uberon_slim synonym: "apex of caecum" RELATED [EMAPA:35140] @@ -170963,6 +171305,8 @@ id: UBERON:0001155 name: colon def: "A portion of the large intestine before it becomes the rectum. In mammals, the colon is the most part of the large intestine, excluding the vermiform appendix, the rectum and the anal canal." [http://orcid.org/0000-0002-2825-0621, http://orcid.org/0000-0002-6601-2165, Wikipedia:Colon_(anatomy), ZFIN:curator] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -171010,6 +171354,8 @@ name: ascending colon def: "Section of colon which is distal to the cecum and proximal to the transversecolon.[FMA,modified]." [FMA:14545, Wikipedia:Ascending_colon] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "colon ascendens" EXACT OMO:0003011 [Wikipedia:Ascending_colon] synonym: "spiral colon" RELATED SENSU [Wikipedia:Spiral_colon] @@ -171042,6 +171388,8 @@ name: transverse colon def: "The proximal-distal subdivision of colon that runs transversely across the upper part of the abdomen, from the right to the left colic flexure. Continuous with the descending colon[BTO,modified]." [BTO:0000272, Wikipedia:Transverse_colon] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "colon transversum" EXACT OMO:0003011 [Wikipedia:Transverse_colon] xref: BTO:0000272 @@ -171072,6 +171420,8 @@ name: descending colon def: "The portion of the colon between the left colic flexure and the sigmoid colon at the pelvic brim; the portion of the descending colon lying in the left iliac fossa is sometimes called the iliac colon." [BTO:0000641] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "colon descendens" EXACT OMO:0003011 [Wikipedia:Descending_colon] xref: BTO:0000641 @@ -171102,6 +171452,8 @@ name: sigmoid colon def: "The part of the large intestine that is closest to the rectum and anus. It forms a loop that averages about 40 cm. in length, and normally lies within the pelvis, but on account of its freedom of movement it is liable to be displaced into the abdominal cavity." [Wikipedia:Sigmoid_colon] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "colon sigmoideum" RELATED OMO:0003011 [Wikipedia:Sigmoid_colon] synonym: "pelvic colon" RELATED [] @@ -171135,6 +171487,8 @@ id: UBERON:0001160 name: fundus of stomach def: "The fundus is the portion of the stomach that lies above the cardiac notch, and contains the fundic glands[GO, Kardong]." [GO:0014825, ISBN:0073040584, Wikipedia:Fundus_(stomach)] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "fundus gastricus" RELATED [BTO:0000502] @@ -171170,6 +171524,8 @@ property_value: homology_notes "Although all vertebrates have a digestive tract id: UBERON:0001161 name: body of stomach def: "The body of stomach is the part of the stomach that lies between the fundus above and the pyloric antrum below; its boundaries are poorly defined[GO]." [GO:0014845, Wikipedia:Body_of_stomach] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "corpus gastricum" RELATED OMO:0003011 [BTO:0000505, Wikipedia:Body_of_stomach] synonym: "corpus gastricum (ventriculare)" EXACT [] @@ -171196,6 +171552,8 @@ id: UBERON:0001162 name: cardia of stomach alt_id: UBERON:0004712 def: "The part of the stomach attached to the esophagus. The cardia begins immediately distal to the z-line of the gastroeosphageal junction, where the squamous epithelium of the esophagus gives way to the columnar epithelium of the gastrointestinal tract[WP]." [BTO:0000198, Wikipedia:Cardia] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "antrum cardiacum" RELATED OMO:0003011 [Wikipedia:Cardia] synonym: "cardiac antrum" RELATED [] @@ -171233,6 +171591,8 @@ property_value: editor_note "We follow Kardong in defining stomach regions by gl id: UBERON:0001163 name: lesser curvature of stomach def: "The lesser curvature of the stomach, extending between the cardiac and pyloric orifices, forms the right or posterior border of the stomach. It descends as a continuation of the right margin of the esophagus in front of the fibers of the right crus of the diaphragm, and then, turning to the right, it crosses the first lumbar vertebra and ends at the pylorus. Nearer its pyloric than its cardiac end is a well-marked notch, the incisura angularis, which varies somewhat in position with the state of distension of the viscus; it serves to separate the stomach into a right and a left portion. The lesser curvature gives attachment to the two layers of the hepatogastric ligament, and between these two layers are the left gastric artery and the right gastric branch of the hepatic artery. [WP,unvetted]." [Wikipedia:Lesser_curvature_of_stomach] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "stomach lesser curvature" EXACT [] xref: EMAPA:37754 {source="MA:th"} @@ -171250,6 +171610,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/31/Gr id: UBERON:0001164 name: greater curvature of stomach def: "The greater curvature of the stomach is directed mainly forward, and is four or five times as long as the lesser curvature. [WP,unvetted]." [Wikipedia:Greater_curvature_of_stomach] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "stomach greater curvature" EXACT [] xref: EMAPA:37753 {source="MA:th"} @@ -171268,6 +171630,8 @@ id: UBERON:0001165 name: pyloric antrum def: "The area at the bottom of the stomach on the caudal side of the pyloric canal that contains gastrin-producing G cells, which stimulate acid production, and the luminal pH-sensitive population of somatostatin-producing D cells." [ISBN:0-683-40008-8, MP:0010790] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "antrum" BROAD [] @@ -171302,6 +171666,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/31/Gr id: UBERON:0001166 name: pylorus def: "The stomach tissue region surrounding and controlling the distal outlet of the stomach, which opens into the duodenum." [MGI:csmith, MP:0010785] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "pars pylorica" EXACT OMO:0003011 [] @@ -171343,6 +171709,8 @@ property_value: homology_notes "Although all vertebrates have a digestive tract id: UBERON:0001167 name: wall of stomach def: "The layered structure that makes up the stomach, typiclly consists of a serous coat, a muscular coat, a mucous membrane, and other tissue layers in between." [MGI:csmith, MP:0010783] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anatomical wall of stomach" EXACT [OBOL:automatic] synonym: "anatomical wall of ventriculus" EXACT [OBOL:automatic] @@ -171367,6 +171735,8 @@ relationship: part_of UBERON:0000945 ! stomach id: UBERON:0001168 name: wall of small intestine def: "An anatomical wall that is part of a small intestine [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anatomical wall of small bowel" EXACT [OBOL:automatic] synonym: "anatomical wall of small intestine" EXACT [OBOL:automatic] synonym: "small bowel anatomical wall" EXACT [OBOL:automatic] @@ -171389,6 +171759,8 @@ relationship: part_of UBERON:0002108 ! small intestine id: UBERON:0001169 name: wall of large intestine def: "An anatomical wall that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anatomical wall of large intestine" EXACT [OBOL:automatic] synonym: "large intestinal wall" EXACT [] synonym: "large intestine anatomical wall" EXACT [OBOL:automatic] @@ -171405,6 +171777,8 @@ relationship: part_of UBERON:0000059 ! large intestine id: UBERON:0001170 name: mesentery of small intestine def: "The peritoneum responsible for connecting the jejunum and ileum (parts of the small intestine) to the back wall of the abdomen. Between the two sheets of peritoneum are blood vessels, lymph vessels, and nerves. This allows these parts of the small intestine to move relatively freely within the abdominopelvic cavity. The brain, however, cannot map sensation accurately, so sensation is usually referred to the midline, an example of referred pain[WP]." [Wikipedia:Mesentery#Mesentery_.28proper.29] +subset: human_subset +subset: mouse_subset synonym: "mesentery (proper)" EXACT [Wikipedia:Mesentery] synonym: "mesentery proper" EXACT [FMA:14643] synonym: "small intestinal mesentery" EXACT [FMA:14643] @@ -171425,6 +171799,8 @@ relationship: part_of UBERON:0002108 ! small intestine id: UBERON:0001171 name: portal lobule def: "The triangular region on the periphery of the liver lobules that contain a bile duct and a terminal branch of the hepatic artery and portal vein, and may also include a lymphatic vessel." [MP:0008992] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:14653 xref: MA:0002498 @@ -171439,6 +171815,8 @@ relationship: part_of UBERON:0001280 {source="MA", source="MP"} ! liver parenchy id: UBERON:0001172 name: hepatic acinus def: "The functional unit of the liver, consisting of a mass of hepatocytes from adjacent liver lobules aligned around the hepatic arterioles and portal venules just as they anastomose into sinusoids." [http://orcid.org/0000-0002-6601-2165, http://www.vivo.colostate.edu/hbooks/pathphys/digestion/liver/histo_acinus.html] +subset: human_subset +subset: mouse_subset synonym: "liver acinus" EXACT [] synonym: "portal acinus" EXACT [] xref: EMAPA:35497 @@ -171459,6 +171837,8 @@ id: UBERON:0001173 name: biliary tree def: "A complex network of conduits that begins with the canals of Hering (intralobar bile duct) and progressively merges into a system of interlobular, septal, and major ducts which then coalesce to form the extrahepatic bile ducts, which finally deliver bile to the intestine, and in some species to the gallbladder." [DOI:10.1002/ar.20664] comment: The path in many species is as follows: Bile canaliculi -> Canals of Hering (intralobar bile duct) -> interlobular bile ducts -> intrahepatic bile ducts -> left and right hepatic ducts merge to form -> common hepatic duct *exits liver* and joins -> cystic duct (from gall bladder) forming -> common bile duct -> joins with pancreatic duct -> forming ampulla of Vater -> enters duodenum [WP] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -171491,6 +171871,8 @@ id: UBERON:0001174 name: common bile duct def: "The part of the biliary tree formed by the union of the cystic duct and the common hepatic duct." [MGI:csmith, MP:0009495] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -171526,6 +171908,8 @@ property_value: external_definition "The duct formed by the union of the common id: UBERON:0001175 name: common hepatic duct def: "Predominantly extrahepatic bile duct which is formed by the junction of the right and left hepatic ducts, which are predominantly intrahepatic, and, in turn, joins the cystic duct to form the common bile duct[GAID]. The common hepatic duct is the duct formed by the convergence of the right hepatic duct (which drains bile from the right functional lobe of the liver) and the left hepatic duct (which drains bile from the left functional lobe of the liver). The common hepatic duct then joins the cystic duct coming from the gallbladder to form the common bile duct[WP]." [Wikipedia:Common_hepatic_duct, ZFIN:curator] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ductus hepaticus communis" RELATED OMO:0003011 [Wikipedia:Common_hepatic_duct] @@ -171556,6 +171940,8 @@ property_value: external_definition "The duct which conveys the bile from the li id: UBERON:0001176 name: right hepatic duct def: "The duct that drains bile from the right half of the liver and joins the left hepatic duct to form the common hepatic duct." [http://www.medterms.com/script/main/art.asp?articlekey=26034] +subset: human_subset +subset: mouse_subset synonym: "ductus hepaticus dexter" RELATED OMO:0003011 [] xref: EHDAA2:0001727 xref: EHDAA:3992 @@ -171577,6 +171963,8 @@ property_value: external_definition "The duct which drains bile from the right h id: UBERON:0001177 name: left hepatic duct def: "The duct that drains bile from the left half of the liver and joins the right hepatic duct to form the common hepatic duct." [http://www.medterms.com/script/main/art.asp?articlekey=26035] +subset: human_subset +subset: mouse_subset synonym: "ductus hepaticus sinister" RELATED OMO:0003011 [] xref: EHDAA2:0000941 xref: EHDAA:3990 @@ -171598,6 +171986,8 @@ property_value: external_definition "The duct which drains bile from the left ha id: UBERON:0001178 name: visceral peritoneum def: "The inner layer of peritoneum that is wrapped around organs located inside the intraperitoneal space." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Peritoneum#Types] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "visceral serous membrane of peritoneum" EXACT [UBERON:cjm] @@ -171618,6 +172008,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gr id: UBERON:0001179 name: peritoneal cavity def: "Anatomical cavity bounded by visceral and parietal peritoneum." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/86, Wikipedia:Peritoneal_cavity] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cavitas peritonealis" RELATED OMO:0003011 [BTO:0001782, Wikipedia:Peritoneal_cavity] @@ -171651,6 +172043,8 @@ property_value: homology_notes "In hagfishes a transverse septum extends upward id: UBERON:0001180 name: superior recess of lesser sac alt_id: UBERON:0006299 +subset: human_subset +subset: mouse_subset synonym: "omental bursa superior recess" EXACT [MA:0000447] synonym: "recessus superior bursae omentalis" EXACT OMO:0003011 [FMA:14708, FMA:TA] synonym: "recessus superior omentalis" EXACT [FMA:14708] @@ -171672,6 +172066,8 @@ property_value: external_ontology_notes "classified as a cavity in EHDAA2, organ id: UBERON:0001181 name: inferior recess of lesser sac alt_id: UBERON:0006249 +subset: human_subset +subset: mouse_subset synonym: "inferior omental bursa" EXACT [FMA:14709] synonym: "inferior recess" EXACT [EHDAA2:0000825] synonym: "inferior recess of omental bursa" EXACT [FMA:14709] @@ -171692,6 +172088,8 @@ id: UBERON:0001182 name: superior mesenteric artery def: "Mesenteric artery that supplies the whole length of the small intestine except the superior part of the duodenum. It also supplies the cecum and the ascending part of the colon and about half the transverse part of the colon. It arises from the anterior surface of the aorta below the celiac artery at the level of the first lumbar vertebra." [MESH:A07.231.114.565.755] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "arteria mesenterica superior" RELATED OMO:0003011 [BTO:0002303, Wikipedia:Superior_mesenteric_artery] @@ -171729,6 +172127,8 @@ id: UBERON:0001183 name: inferior mesenteric artery def: "Mesenteric artery that supplies the large intestine from the left colic (or splenic) flexure to the upper part of the rectum, which includes the descending colon, the sigmoid colon, and part of the rectum. Proximally, its territory of distribution overlaps (forms a watershed) with the middle colic artery, and therefore the superior mesenteric artery. The SMA and IMA anastomose via the marginal artery (artery of Drummond). The territory of distribution of the IMA is more or less equivalent to the embryonic hindgut. [WP,unvetted]." [Wikipedia:Inferior_mesenteric_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "arteria mesenterica inferior" RELATED OMO:0003011 [BTO:0002302, Wikipedia:Inferior_mesenteric_artery] @@ -171768,6 +172168,8 @@ name: renal artery def: "One of two laterally paired arteries that supplies the kidneys. These are large arteries that branch from the dorsal aorta in primitive vertebrates." [ISBN:0073040584, Wikipedia:Renal_artery] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -171812,6 +172214,8 @@ name: right renal artery def: "Renal artery that supplies the right kidney." [https://orcid.org/0000-0002-6601-2165] comment: The right [renal artery] passes behind the inferior vena cava, the right renal vein, the head of the pancreas, and the descending part of the duodenum[WP] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "right renal arterial tree" EXACT [] @@ -171836,6 +172240,8 @@ name: left renal artery def: "Renal artery that supplies the left kidney." [https://orcid.org/0000-0002-6601-2165] comment: The left [renal artery] is somewhat higher than the right; it lies behind the left renal vein, the body of the pancreas and the splenic vein, and is crossed by the inferior mesenteric vein[WP] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "left renal arterial tree" EXACT [] xref: EMAPA:37098 {source="MA:th"} @@ -171857,6 +172263,8 @@ id: UBERON:0001187 name: testicular artery def: "One of a pair of arteries that is a branch of the abdominal aorta that supplies blood to a male gonad." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Testicular_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria testicularis" RELATED OMO:0003011 [Wikipedia:Testicular_artery] synonym: "internal spermatic" RELATED [Wikipedia:Testicular_artery] @@ -171886,6 +172294,8 @@ id: UBERON:0001188 name: right testicular artery def: "A testicular artery that supplies a right testicle." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "right spermatic artery" EXACT [] synonym: "trunk of right testicular arterial tree" EXACT [] xref: EMAPA:37382 {source="MA:th"} @@ -171906,6 +172316,8 @@ id: UBERON:0001189 name: left testicular artery def: "A testicular artery that supplies a left testicle." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "left spermatic artery" EXACT [] synonym: "trunk of left testicular arterial tree" EXACT [] xref: EMAPA:37099 {source="MA:th"} @@ -171926,6 +172338,8 @@ id: UBERON:0001190 name: ovarian artery def: "An artery that supplies an ovary." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria ovarica" RELATED OMO:0003011 [Wikipedia:Ovarian_artery] synonym: "ovarian arterial tree" EXACT [] @@ -171952,6 +172366,8 @@ name: common iliac artery def: "The common iliac arteries are two large arteries, about 4cm long in adults but more than a centimetre in diameter, that originate from the aortic bifurcation. The arteries run inferolaterally, along the medial border of the psoas muscles to the pelvic brim, where they bifurcate into the external iliac artery and internal iliac artery. The common iliac artery, and all of its branches, exist as paired structures (that is to say, there is one on the left side and one on the right). The distribution of the common iliac artery is basically the pelvis and lower limb on the corresponding side. Both common iliac arteries are accompanied along their course by common iliac veins. [WP,unvetted]." [Wikipedia:Common_iliac_artery] comment: See notes for parent class subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria iliaca communis" RELATED OMO:0003011 [Wikipedia:Common_iliac_artery] synonym: "common iliac arterial tree" EXACT [] @@ -171977,6 +172393,8 @@ id: UBERON:0001192 name: left gastric artery def: "An artery that arises from the celiac artery and supplies the stomach." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria gastrica sinistra" RELATED OMO:0003011 [Wikipedia:Left_gastric_artery] synonym: "gastric artery" RELATED [FMA:14768] @@ -172000,6 +172418,8 @@ id: UBERON:0001193 name: hepatic artery def: "An artery that supplies the liver." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Hepatic_artery_proper] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "arteria hepatica" RELATED [BTO:0004307] @@ -172031,6 +172451,8 @@ id: UBERON:0001194 name: splenic artery def: "An artery that supplies the spleen." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria lienalis" RELATED OMO:0003011 [Wikipedia:Splenic_artery] synonym: "arteria splenica" EXACT OMO:0003011 [Wikipedia:Splenic_artery] @@ -172064,6 +172486,8 @@ id: UBERON:0001195 name: inferior pancreaticoduodenal artery def: "The inferior pancreaticoduodenal artery is a branch of the superior mesenteric artery or from its first intestinal branch, opposite the upper border of the inferior part of the duodenum. It courses to the right between the head of the pancreas and duodenum, and then ascends to anastomose with the anterior and posterior superior pancreaticoduodenal artery. It distributes branches to the head of the pancreas and to the descending and inferior parts of the duodenum. [WP,unvetted]." [Wikipedia:Inferior_pancreaticoduodenal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteriae pancreaticoduodenales inferiores" RELATED OMO:0003011 [Wikipedia:Inferior_pancreaticoduodenal_artery] synonym: "inferior pancreatico-duodenal artery" EXACT [] @@ -172086,6 +172510,8 @@ id: UBERON:0001196 name: middle colic artery def: "The middle colic artery is a branch of the superior mesenteric artery that mostly supplies the transverse colon. It arises just below the pancreas, and, passing downward and forward between the layers of the transverse mesocolon, divides into two branches: right and left. The right branch anastomoses with the right colic artery The left branch anastomoses with the left colic artery, a branch of the inferior mesenteric artery. The arches thus formed are placed about two fingers' breadth from the transverse colon, to which they distribute branches. [WP,unvetted]." [Wikipedia:Middle_colic_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria colica media" RELATED OMO:0003011 [Wikipedia:Middle_colic_artery] xref: EMAPA:37106 {source="MA:th"} @@ -172113,6 +172539,8 @@ id: UBERON:0001197 name: ileocolic artery def: "The Ileocolic Artery is the lowest branch arising from the concavity of the superior mesenteric artery. It passes downward and to the right behind the peritoneum toward the right iliac fossa, where it divides into a superior and an inferior branch; the inferior anastomoses with the end of the superior mesenteric artery, the superior with the right colic artery. Supplies the cecum, ileum, and appendix. [WP,unvetted]." [Wikipedia:Ileocolic_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria ileocolica" RELATED OMO:0003011 [Wikipedia:Ileocolic_artery] xref: EMAPA:37083 {source="MA:th"} @@ -172142,6 +172570,8 @@ id: UBERON:0001198 name: superior suprarenal artery def: "Each (left and right) superior suprarenal artery is a branch of the inferior phrenic artery on that side of the body. The left and right phrenic arteries supply the diaphragm, and come off the aorta. [WP,unvetted]." [Wikipedia:Superior_suprarenal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteriae suprarenales superiores" EXACT OMO:0003011 [Wikipedia:Superior_suprarenal_artery] synonym: "superior adrenal branch of inferior phrenic artery" EXACT [] @@ -172164,6 +172594,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/61/Gr id: UBERON:0001199 name: mucosa of stomach def: "The mucosal layer that lines the stomach." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "gastric mucosa" EXACT [] @@ -172213,6 +172645,8 @@ property_value: external_definition "The gastric mucosa is the mucous membrane l id: UBERON:0001200 name: submucosa of stomach def: "The fibrous connective tissue layer beneath the stomach mucosa." [MGI:csmith, MP:0010794] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "gastric submucosa" EXACT [] synonym: "stomach submucosa" EXACT [] @@ -172240,6 +172674,8 @@ relationship: part_of UBERON:0001167 ! wall of stomach id: UBERON:0001201 name: serosa of stomach def: "The outermost layer of the stomach wall, consisting of layers of connective tissue continuous with the peritoneum." [MGI:csmith, MP:0010793] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anatomical wall of stomach serosa" EXACT [OBOL:automatic] synonym: "anatomical wall of stomach serous membrane" EXACT [OBOL:automatic] @@ -172300,6 +172736,8 @@ property_value: editor_note "TODO - check serosa/peritoneum" xsd:string id: UBERON:0001202 name: pyloric sphincter def: "A strong ring of smooth muscle at the end of the pyloric canal which lets food pass from the stomach to the duodenum. It receives sympathetic innervation from the celiac ganglion[WP]." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "pyloric valve" EXACT [Wikipedia:Pylorus] @@ -172326,6 +172764,8 @@ property_value: homology_notes "(...) the adult Xenopus stomach exhibits both gl id: UBERON:0001203 name: muscularis mucosae of stomach def: "The thin layer of smooth muscle in the mucosal layer of the stomach that functions to agitate the surface area stomach mucosa by moving the villi back and forth." [MGI:csmith, MP:0010806] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "gastric muscularis mucosa" EXACT [] synonym: "lamina muscularis mucosae (tunica mucosa)(gaster)" EXACT [] @@ -172352,6 +172792,8 @@ property_value: function_notes "agitate the surface area stomach mucosa by movin id: UBERON:0001204 name: mucosa of small intestine def: "A mucosa that is part of a small intestine [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of small bowel" EXACT [OBOL:automatic] synonym: "mucosa of organ of small intestine" EXACT [OBOL:automatic] synonym: "mucosa of small bowel" EXACT [OBOL:automatic] @@ -172389,6 +172831,8 @@ relationship: part_of UBERON:0002108 ! small intestine id: UBERON:0001205 name: submucosa of small intestine def: "Submucosal tissue in the small intestines." [Wikipedia:Small_intestinal_submucosa] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "small bowel submucosa" EXACT [OBOL:automatic] synonym: "small intestinal submucosa" EXACT [] @@ -172414,6 +172858,8 @@ relationship: part_of UBERON:0002108 ! small intestine id: UBERON:0001206 name: serosa of small intestine def: "A serous membrane that is part of a small intestine [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "serosa of small bowel" EXACT [OBOL:automatic] synonym: "serous coat of small intestine" EXACT [] synonym: "serous membrane of small bowel" EXACT [OBOL:automatic] @@ -172442,6 +172888,8 @@ property_value: structure_notes "duodenum, 1st part serosa, 2nd - 4th adventitia id: UBERON:0001207 name: mucosa of large intestine def: "A mucosa that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "large intestinal mucosa" EXACT [] synonym: "large intestine mucosa" EXACT [] synonym: "large intestine mucosa of organ" EXACT [OBOL:automatic] @@ -172468,6 +172916,8 @@ relationship: part_of UBERON:0001242 ! intestinal mucosa id: UBERON:0001208 name: submucosa of large intestine def: "A submucosa that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "large intestinal submucosa" EXACT [] synonym: "large intestine submucosa" EXACT [] synonym: "submucous layer of large intestine" RELATED [BTO:0002111] @@ -172488,6 +172938,8 @@ relationship: part_of UBERON:0001169 ! wall of large intestine id: UBERON:0001209 name: serosa of large intestine def: "A serous membrane that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "large intestinal serosa" EXACT [] synonym: "large intestine serosa" EXACT [] synonym: "large intestine serous membrane" EXACT [OBOL:automatic] @@ -172512,6 +172964,8 @@ property_value: editor_note "TODO - check serosa/peritoneum" xsd:string id: UBERON:0001210 name: muscularis mucosae of small intestine def: "A muscularis mucosa that is part of a small intestine." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lamina muscularis mucosae (tunica mucosa)(intestinum tenue)" EXACT [] synonym: "lamina muscularis mucosae intestini tenuis" EXACT OMO:0003011 [FMA:15051, FMA:TA] synonym: "lamina muscularis of small intestine mucous membrane" EXACT [] @@ -172535,6 +172989,8 @@ id: UBERON:0001211 name: Peyer's patch def: "The protruding lymphoid tissue located on the mucosa of the intestine that is composed of densely packed B cell follicles." [http://orcid.org/0000-0002-6601-2165, MESH:A10.549.600, MP:0000696, PMID:15841100] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "aggregated lymphoid follicle of intestine" RELATED [] @@ -172565,6 +173021,8 @@ property_value: taxon_notes "Reptiles have accumulations of lymphocytes in their id: UBERON:0001212 name: duodenal gland def: "A compound tubular submucosal gland found in that portion of the duodenum which is above the hepatopancreatic sphincter (Sphincter of Oddi). The main function of these glands is to produce a mucus-rich alkaline secretion (containing bicarbonate)[WP]." [Wikipedia:Brunner's_glands] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -172601,6 +173059,8 @@ id: UBERON:0001213 name: intestinal villus alt_id: UBERON:0007607 def: "The tiny hair-like projections that protrude from the inside of the small intestine that contain blood vessels that capture digested nutrients that are absorbed through the intestinal wall; the villi increase the absorptive surface area of the small intestine by approximately 30-fold." [MGI:csmith, MGI:rbabiuk, MP:0008108] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -172640,6 +173100,8 @@ id: UBERON:0001214 name: pancreatic tributary of splenic vein def: "The pancreatic veins consist of several small vessels which drain the body and tail of the pancreas, and open into the trunk of the great pancreatic vein. [WP,unvetted]." [Wikipedia:Pancreatic_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "pancreatic vein" EXACT [] xref: EMAPA:37678 {source="MA:th"} @@ -172660,6 +173122,8 @@ id: UBERON:0001215 name: inferior mesenteric vein def: "A blood vessel that drains blood from the large intestine that usually terminates when reaching the splenic vein, which goes on to form the portal vein with the superior mesenteric vein (SMV). Anatomical variations include the IMV draining into the confluence of the SMV and splenic vein and the IMV draining in the SMV. The IMV lies to the right of the similarly name artery, the inferior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]." [Wikipedia:Inferior_mesenteric_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "lower mesenteric vein" RELATED [BTO:0002782] synonym: "vena mesenterica inferior" RELATED OMO:0003011 [Wikipedia:Inferior_mesenteric_vein] @@ -172688,6 +173152,8 @@ id: UBERON:0001216 name: jejunal vein def: "A tributary of the superior mesenteric vein that drains the jejunum." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Jejunal_veins] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "venae jejunales" RELATED OMO:0003011 [Wikipedia:Jejunal_veins] xref: EMAPA:37160 {source="MA:th"} xref: FMA:15402 @@ -172707,6 +173173,8 @@ id: UBERON:0001217 name: ileal vein def: "The veins that drain blood from the ileum into the superior mesenteric vein." [ncithesaurus:Ileal_Vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:37149 {source="MA:th"} xref: FMA:15405 xref: MA:0002140 @@ -172726,6 +173194,8 @@ id: UBERON:0001218 name: middle colic vein def: "The middle colic vein drains the transverse colon. It is a tributary of the superior mesenteric vein, and follows the path of its corresponding artery, the middle colic artery. [WP,unvetted]." [Wikipedia:Middle_colic_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "vena colica media" RELATED OMO:0003011 [Wikipedia:Middle_colic_vein] synonym: "vena colica media (intermedia)" EXACT [] @@ -172751,6 +173221,8 @@ id: UBERON:0001219 name: ileocolic vein def: "The ileocolic vein is a vein which drains the ileum, colon, and cecum. [WP,unvetted]." [Wikipedia:Ileocolic_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "vena ileocolica" RELATED OMO:0003011 [Wikipedia:Ileocolic_vein] xref: EMAPA:37150 {source="MA:th"} @@ -172779,6 +173251,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0001220 name: quadratus lumborum def: "An abdominal muscle that inserts on the last rib and transverse processes of lumbar vertebrae. It is irregular and quadrilateral in shape, and broader below than above." [Wikipedia:Quadratus_lumborum_muscle] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: uberon_slim synonym: "muscle of posterior abdominal wall" EXACT [] @@ -172800,6 +173274,8 @@ id: UBERON:0001221 name: transversus abdominis muscle def: "The lateral abdominal wall muscle that is deep to the internal oblique." [ISBN:9781435464339, UBERON:cjm] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: uberon_slim synonym: "musculus transversus abdominis" EXACT OMO:0003011 [FMA:15570, FMA:TA] @@ -172842,6 +173318,8 @@ property_value: homology_notes "Behind the thorax, the lateral group (of muscles id: UBERON:0001222 name: right ureter def: "An ureter that is part of a right side of organism [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37373 {source="MA:th"} xref: FMA:15571 xref: MA:0001685 @@ -172860,6 +173338,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0001223 name: left ureter def: "An ureter that is part of a left side of organism [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37372 {source="MA:th"} xref: FMA:15572 xref: MA:0001684 @@ -172880,6 +173360,8 @@ name: renal pelvis def: "A funnel shaped proximal portion of the ureter that is formed by convergence of the major calices [MP]." [MP:0004194] comment: In this ontology, the renal pelvis is represented as the area of part-overlap between the kidney and the ureter subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "kidney pelvis" EXACT [] @@ -172915,6 +173397,8 @@ id: UBERON:0001225 name: cortex of kidney def: "Outer cortical portion of the kidney, between the renal capsule and the renal medulla." [Wikipedia:Renal_cortex] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cortex renalis" EXACT OMO:0003011 [FMA:15581, FMA:TA] @@ -172952,6 +173436,8 @@ name: major calyx def: "Portion of the urinary collecting system within the kidney that drains several minor calyces." [http://anatomy.uams.edu/anatomyhtml/kidney.html] comment: major calyx collects urine from several renal papillae; all major calyces unite to form the renal pelvis subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "calices renales majores" EXACT OMO:0003011 [Wikipedia:Major_calyx] synonym: "calices renales majores" RELATED OMO:0003011 [Wikipedia:Major_calyx] @@ -172971,6 +173457,8 @@ name: minor calyx def: "Portion of the urinary collecting system within the kidney that drains one renal papilla." [http://anatomy.uams.edu/anatomyhtml/kidney.html] comment: one renal papilla projects into the lumen of one minor calyx; several minor calyces unite to form a major calyx subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "calices renales minores" EXACT OMO:0003011 [Wikipedia:Minor_calyx] synonym: "calices renales minores" RELATED OMO:0003011 [Wikipedia:Minor_calyx] @@ -172989,6 +173477,8 @@ id: UBERON:0001228 name: renal papilla def: "Tip of renal pyramid projecting into a minor calyx." [http://anatomy.uams.edu/anatomyhtml/kidney.html] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "kidney papilla" EXACT [MP:0011303] @@ -173019,6 +173509,8 @@ name: renal corpuscle def: "The structure containing the glomerular capsule and the glomerulus that serves as the initial blood-filtering component of a nephron." [ISBN:0-683-40008-8, MP:0002827] comment: Together, the Bowmans capsule and the glomerulus comprise the definitive renal corpuscle. http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -173058,6 +173550,8 @@ property_value: external_definition "The part of the nephron that filters blood. id: UBERON:0001230 name: glomerular capsule def: "A cup-like sac at the expanded beginning of a tubular component of a nephron that contains the glomerulus." [MGI:pvb, MP:0002828, Wikipedia:Bowman%27s_capsule] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -173105,6 +173599,8 @@ alt_id: UBERON:0004210 def: "An epithelial tube that is part of the nephron, the functional part of the kidney." [GO:0072078, Wikipedia:Renal_tubule] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -173143,6 +173639,8 @@ id: UBERON:0001232 name: collecting duct of renal tubule def: "The collecting duct is a portion of the nephron through which water flows, moving passively down its concentration gradient." [GO:0072044, Wikipedia:Collecting_tubule] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -173182,6 +173680,8 @@ property_value: external_ontology_notes "in ISBN:0073040584 (Vertebrates, Kardon id: UBERON:0001233 name: right adrenal gland def: "An adrenal gland that is in the right side of the abdomen." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "glandula suprarenalis dexter" EXACT OMO:0003011 [] synonym: "right suprarenal gland" EXACT [] xref: EMAPA:37357 {source="MA:th"} @@ -173201,6 +173701,8 @@ property_value: taxon_notes "In humans, the right adrenal gland is triangular sh id: UBERON:0001234 name: left adrenal gland def: "An adrenal gland that is in the left side of the abdomen." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "glandula suprarenalis sinister" EXACT OMO:0003011 [] synonym: "left suprarenal gland" EXACT [] xref: EMAPA:37356 {source="MA:th"} @@ -173221,6 +173723,8 @@ id: UBERON:0001235 name: adrenal cortex def: "The thick outer layer of the adrenal gland that produces and secretes steroid hormones such as corticosterone, estrone and aldosterone." [ISBN:0-683-40008-8, MGI:llw2, MP:0008288] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "adrenal gland cortex" EXACT [] @@ -173267,6 +173771,8 @@ id: UBERON:0001236 name: adrenal medulla def: "The inner portion of the adrenal gland that consists mainly of chromaffin cells which produce, store and secrete neurotransmitters such as epinephrine and norepinephrine." [MESH:A06.407.071.265, MGI:llw2, MP:0008289] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "adrenal central medulla" RELATED [] @@ -173315,6 +173821,8 @@ id: UBERON:0001237 name: paraaortic body def: "A chromaffin paraganglion located at the bifurcation of the aorta or at the origin of the inferior mesenteric artery." [Wikipedia:Organ_of_Zuckerkandl] comment: The largest chromaffin paraganglia, and the largest source of circulating catecholamines in the fetus and young infants, and gradually atrophies to microscopic loci[WP] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: uberon_slim synonym: "organ of Zuckerkandl" EXACT [] @@ -173337,6 +173845,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/af/Gr id: UBERON:0001238 name: lamina propria of small intestine def: "Lamina propria that is part_of the small intestine." [GOC:Obol] +subset: human_subset +subset: mouse_subset synonym: "lamina propria mucosa of small bowel" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of small intestine" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of small bowel" EXACT [OBOL:automatic] @@ -173366,6 +173876,8 @@ relationship: part_of UBERON:0002108 ! small intestine id: UBERON:0001239 name: muscularis mucosae of large intestine def: "A muscularis mucosa that is part of a large intestine." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lamina muscularis mucosae intestini crassi" EXACT OMO:0003011 [FMA:15655, FMA:TA] synonym: "lamina muscularis of large intestine mucosa" EXACT [] synonym: "lamina muscularis of large intestine mucous membrane" EXACT [] @@ -173387,6 +173899,8 @@ relationship: part_of UBERON:0001240 ! muscularis mucosae of intestine id: UBERON:0001240 name: muscularis mucosae of intestine def: "A muscularis mucosa that is part of a intestine." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "intestinal muscularis mucosa" RELATED [EMAPA:35442] synonym: "intestine muscularis mucosa" EXACT [MA:0002694] xref: EMAPA:35442 @@ -173403,6 +173917,8 @@ relationship: part_of UBERON:0001242 ! intestinal mucosa id: UBERON:0001241 name: crypt of Lieberkuhn of small intestine def: "The tubular intestinal glands found in the mucosal membranes of the small intestine." [ISBN:0-683-40008-8, MP:0004841] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "crypt of Lieberkuhn of small bowel" EXACT [OBOL:automatic] synonym: "crypt of Lieberkuhn of small intestine" EXACT [OBOL:automatic] @@ -173433,6 +173949,8 @@ relationship: part_of UBERON:0002108 ! small intestine id: UBERON:0001242 name: intestinal mucosa def: "Mucosal layer that lines the intestine." [UBERON:cjm] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "bowel mucosa" EXACT [OBOL:automatic] @@ -173471,6 +173989,8 @@ relationship: part_of UBERON:0001262 ! wall of intestine id: UBERON:0001243 name: serosa of intestine def: "A serous membrane that is part of a wall of intestine [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anatomical wall of bowel serosa" EXACT [OBOL:automatic] synonym: "anatomical wall of bowel serous membrane" EXACT [OBOL:automatic] synonym: "anatomical wall of intestine serosa" EXACT [OBOL:automatic] @@ -173524,6 +174044,8 @@ property_value: editor_note "TODO - check serosa/peritoneum" xsd:string id: UBERON:0001244 name: internal anal sphincter def: "The smooth muscle ring, formed by an increase of the circular muscle fibers of the rectum, situated at the upper end of the anal canal, internal to the outer voluntary external anal sphincter." [MGI:anna, MP:0009055] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "circular layer of anal muscularis externa" EXACT [] @@ -173549,6 +174071,8 @@ id: UBERON:0001245 name: anus def: "Orifice at the opposite end of an animal's digestive tract from the mouth. Its function is to expel feces, unwanted semi-solid matter produced during digestion, which, depending on the type of animal, may be one or more of: matter which the animal cannot digest, such as bones; food material after all the nutrients have been extracted, for example cellulose or lignin; ingested matter which would be toxic if it remained in the digestive tract; and dead or excess gut bacteria and other endosymbionts." [Wikipedia:Anus, ZFIN:curator] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "anal opening" EXACT [] @@ -173587,6 +174111,8 @@ property_value: taxon_notes "In the lungfish, sharks and rays the rectum opens i id: UBERON:0001246 name: interlobular bile duct def: "The canals that carry bile in the liver between the intralobular ducts and the biliary ductules; interlobular bile ducts are part of the interlobular portal triad." [MP:0009500] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "interlobular ductule" EXACT [MP:0009500] xref: FMA:15767 @@ -173605,6 +174131,8 @@ relationship: part_of UBERON:0001279 {source="FMA", source="MA", source="MP"} ! id: UBERON:0001247 name: falciform ligament def: "A ligament that attaches the liver to the anterior body wall. It is a broad and thin antero-posterior peritoneal fold, falciform in shape, its base being directed downward and backward and its apex upward and backward. It is a remnant of the ventral mesentery of the fetus. It is situated in an antero-posterior plane but lies obliquely, so that one surface faces forward and is in contact with the peritoneum behind the right rectus and the diaphragm, while the other is directed backward and is in contact with the left lobe of the liver. It is attached by its left margin to the under surface of the diaphragm and the posterior surface of the sheath of the right Rectus as low down as the umbilicus; by its right margin it extends from the notch on the anterior margin of the liver, as far back as the posterior surface. It is composed of two layers of peritoneum closely united together. Its base or free edge contains between its layers the round ligament and the paraumbilical veins[WP]." [Wikipedia:Falciform_ligament] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "falciform ligament of liver" EXACT [] synonym: "ligamentum falciforme (hepatis)" EXACT [] @@ -173638,6 +174166,8 @@ id: UBERON:0001248 name: hilum of spleen def: "The splenic hilum is a location on the surface of the spleen. It is the point of attachment for the gastrosplenic ligament, and the point of insertion for the splenic artery and splenic vein. [WP,unvetted]." [Wikipedia:Splenic_hilum] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "hilum" BROAD [EMAPA:19303] synonym: "hilum lienale" EXACT OMO:0003011 [FMA:15841, FMA:TA] @@ -173666,6 +174196,8 @@ id: UBERON:0001249 name: spleen lymphoid follicle alt_id: UBERON:0003969 def: "The area of the white pulp where the affinity maturation of B cells and the generation of memory B cells and plasma cells occur." [CL:tm, https://github.com/obophenotype/uberon/issues/6, MP:0008470] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lymphatic follicle of spleen" EXACT [FMA:15843] synonym: "lymphoid follicle of spleen" EXACT [FMA:15843] @@ -173700,6 +174232,8 @@ id: UBERON:0001250 name: red pulp of spleen def: "The parenchymatous tissue network of the spleen that consists of loose plates or cords (sinuses) infiltrated with red blood cells where most of the blood filtration occurs and degenerate erythrocytes are removed from the circulation." [MGI:csmith, MP:0002356] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "pulpa rubra" EXACT OMO:0003011 [FMA:15844, FMA:TA] @@ -173727,6 +174261,8 @@ id: UBERON:0001251 name: marginal zone of spleen def: "The zone between the red and white pulp of the spleen containing numerous macrophages and lymphocytes, and a rich plexus of sinusoids supplied by white pulp arterioles carrying blood-borne antigens." [ISBN:0-683-40008-8, MP:0002362] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "junctional zone of spleen" EXACT [] synonym: "marginal zone" BROAD [Wikipedia:Marginal_zone] @@ -173752,6 +174288,8 @@ property_value: external_ontology_notes "WP says - (Some sources consider it to id: UBERON:0001252 name: adventitia of ureter def: "An adventitia that is part of a ureter." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "external adventitia of ureter" EXACT [] synonym: "tunica adventitia (ureter)" EXACT OMO:0003011 [FMA:15892, FMA:TA] synonym: "tunica adventitia ureteris" EXACT OMO:0003011 [FMA:15892, FMA:TA] @@ -173774,6 +174312,8 @@ id: UBERON:0001253 name: lamina propria of ureter def: "A lamina propria that is part of a ureter [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lamina propria mucosa of ureter" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of ureter" EXACT [OBOL:automatic] synonym: "ureter lamina propria" EXACT [] @@ -173798,6 +174338,8 @@ id: UBERON:0001254 name: urothelium of ureter def: "The luminal epithelium of the tube that conducts the urine from the renal pelvis to the bladder[MP]." [MP:0000535] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "transitional epithelium of ureter" EXACT [] synonym: "ureter luminal urothelium" RELATED INCONSISTENT [MP:0000535] @@ -173822,7 +174364,9 @@ name: urinary bladder def: "Distensible musculomembranous organ situated in the anterior part of the pelvic cavity in which urine collects before excretion[MP]." [MGI:anna, Wikipedia:Urinary_bladder] subset: efo_slim subset: human_reference_atlas +subset: human_subset subset: major_organ +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -173873,6 +174417,8 @@ id: UBERON:0001256 name: wall of urinary bladder def: "An anatomical wall that lines the insider of a urinary bladder." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anatomical wall of bladder" EXACT [OBOL:automatic] synonym: "anatomical wall of urinary bladder" EXACT [OBOL:automatic] @@ -173900,6 +174446,8 @@ id: UBERON:0001257 name: trigone of urinary bladder def: "The smooth triangular region of the wall of the urinary bladder formed by the two ureteral orifices and the internal urethral orifice; it is an area in which the muscle fibers are closely adherent to the mucosa." [MGI:anna, MP:0011768] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "bladder trigone" EXACT [] @@ -173935,6 +174483,8 @@ property_value: function_notes "The area is very sensitive to expansion and once id: UBERON:0001258 name: neck of urinary bladder def: "The constricted portion of the urinary bladder, formed by the meeting of its inferolateral surfaces proximal to the opening of the urethra[MP]." [MP:anna, Wikipedia:Neck_of_urinary_bladder] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "bladder neck" EXACT [] @@ -173966,6 +174516,8 @@ name: mucosa of urinary bladder def: "The mucous membrane lining the urinary bladder." [MGI:anna, MP:0011766] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bladder mucosa" EXACT [] synonym: "bladder mucous membrane" EXACT [OBOL:automatic] @@ -173999,6 +174551,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0001260 name: serosa of urinary bladder def: "A serous membrane that is part of a urinary bladder [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bladder serosa" EXACT [] synonym: "bladder serous membrane" EXACT [OBOL:automatic] synonym: "serosa of bladder" EXACT [] @@ -174027,6 +174581,8 @@ id: UBERON:0001261 name: lamina propria of urinary bladder def: "A lamina propria that is part of a urinary bladder [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "bladder lamina propria" EXACT [OBOL:automatic] synonym: "bladder lamina propria mucosa" EXACT [OBOL:automatic] synonym: "bladder lamina propria mucosae" EXACT [OBOL:automatic] @@ -174057,6 +174613,8 @@ property_value: structure_notes "Contains loose to dense connective tissue, vari id: UBERON:0001262 name: wall of intestine def: "An anatomical wall that is part of a intestine [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anatomical wall of bowel" EXACT [OBOL:automatic] synonym: "anatomical wall of intestine" EXACT [OBOL:automatic] synonym: "bowel anatomical wall" EXACT [OBOL:automatic] @@ -174084,6 +174642,8 @@ id: UBERON:0001263 name: pancreatic acinus def: "The secretory units of the exocrine pancreas, where fluid containing digestive enzymes is produced; consists of a group of secretory cells surrounding a luminal space that connects to the pancreatic duct." [MP:0009145] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "acinus pancreaticus" EXACT OMO:0003011 [FMA:16011] synonym: "pancreas acinus" EXACT [] @@ -174112,7 +174672,9 @@ name: pancreas def: "An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating hormones[GO]." [GO:0031016] subset: efo_slim subset: human_reference_atlas +subset: human_subset subset: major_organ +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -174165,6 +174727,8 @@ id: UBERON:0001265 name: trabecula of spleen def: "A trabecula that is part of a spleen." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "spleen trabeculum" EXACT [] synonym: "splenic trabecula" EXACT [] synonym: "trabeculae of spleen" EXACT OMO:0003004 [] @@ -174188,6 +174752,8 @@ id: UBERON:0001266 name: splenic cord def: "A structure found in the red pulp of the spleen between the sinusoids, consisting of fibrils and connective tissue cells with a large population of monocytes and macrophages. These cords contain half of the human body's monocytes as a reserve so that after tissue injury these monocytes can move in and aid locally sourced monocytes in wound healing. Erythrocytes pass through the cords of Billroth before entering the sinusoids. The passage into the sinusoids may be seen as a bottleneck, where erythrocytes need to be flexible in order to pass through. In disorders of erythrocyte shape and/or flexibility, such as hereditary spherocytosis, erythrocytes fail to pass through and get phagocytosed, causing extravascular hemolysis." [Wikipedia:Cords_of_Billroth] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cord of Billroth" EXACT [Wikipedia:Cords_of_Billroth] synonym: "cord of Bilroth" EXACT [FMA:16031] xref: EMAPA:37752 {source="MA:th"} @@ -174206,6 +174772,8 @@ id: UBERON:0001267 name: femoral nerve def: "The femoral nerve, the largest branch of the lumbar plexus, arises from the ventral divisions of the second, third, and fourth lumbar nerves. It descends through the fibers of the Psoas major, emerging from the muscle at the lower part of its lateral border, and passes down between it and the Iliacus, behind the iliac fascia; it then runs beneath the inguinal ligament, into the thigh, and splits into an anterior and a posterior division. Under the inguinal ligament, it is separated from the femoral artery by a portion of the Psoas major. [WP,unvetted]." [Wikipedia:Femoral_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "anterior crural nerve" EXACT [] synonym: "nervus femoralis" RELATED OMO:0003011 [Wikipedia:Femoral_nerve] @@ -174231,6 +174799,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7c/Gr id: UBERON:0001268 name: peritoneal fluid def: "Transudate contained in the peritoneal cavity." [FMA:16515] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: BTO:0001031 @@ -174251,6 +174821,8 @@ relationship: located_in UBERON:0001179 ! peritoneal cavity id: UBERON:0001269 name: acetabular part of hip bone def: "The acetabulum is a concave surface of the pelvis. The head of the femur meets with the pelvis at the acetabulum, forming the hip joint. There are three bones of the os coxae (hip bone) that come together to form the acetabulum. Contributing a little more than two-fifths of the structure is the ischium, which provides lower and side boundaries to the acetabulum. The ilium forms the upper boundary, providing a little less than two-fifths of the structure of the acetabulum. The rest is formed by the pubis, near the midline. It is bounded by a prominent uneven rim, which is thick and strong above, and serves for the attachment of the acetabular labrum, which reduces its opening, and deepens the surface for formation of the hip joint. At the lower part of the acetabulum is the acetabular notch, which is continuous with a circular depression, the acetabular fossa, at the bottom of the cavity of the acetabulum. The rest of the acetabulum is formed by a curved, crescent-moon shaped surface, the lunate surface, where the joint is made with the head of the femur. Its counterpart in the pectoral girdle is the glenoid fossa.[WP,unvetted]." [Wikipedia:Acetabulum] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "acetabular region" EXACT [VHOG:0000974] @@ -174282,6 +174854,8 @@ property_value: taxon_notes "In reptiles and in birds, the acetabula are deep so id: UBERON:0001270 name: bony pelvis def: "A ring of bone formed by the sacrum and the first few coccygeal vertebrae as the roof, the pubis and ischia as the floor and the ilia and the acetabular part of the ischia as the walls." [http://medical-dictionary.thefreedictionary.com/bony+pelvis] +subset: human_subset +subset: mouse_subset synonym: "pelvis ossea" EXACT [] synonym: "skeletal system of pelvis" EXACT [FMA:16580] xref: FMA:16580 @@ -174300,6 +174874,8 @@ property_value: external_ontology_notes "in FMA, this is part of the axial skele id: UBERON:0001271 name: pelvic girdle region def: "The organism subdivision that includes the pelvic girdle skeleton and associated soft tissue. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). Examples: There are only two instances in an organism, right and left pelvic girdle regions." [DOI:10.1002/dvdy.22617, FMA:16581, FMA:23217, https://groups.google.com/d/topic/obo-anatomy/h4R4xKmINrw/discussion, https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "girdle - pelvic" RELATED [] @@ -174327,6 +174903,8 @@ id: UBERON:0001272 name: innominate bone def: "A fused bone consisting of the ilium, ischium and pubis. Together with the sacrum and coccyx, it comprises the pelvis. [WP,modified]." [https://github.com/obophenotype/uberon/issues/290, https://orcid.org/0000-0002-6601-2165, Wikipedia:Hip_bone] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "basipterygium" RELATED [] synonym: "bone of pelvic girdle" BROAD [FMA:16585] @@ -174359,6 +174937,8 @@ id: UBERON:0001273 name: ilium def: "Paired endochondral bone that is the dorsal-most of the pelvic bones, offering attachment areas for gluteal muscles on its main surface [PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/105, https://github.com/obophenotype/uberon/issues/60, PHENOSCAPE:ad] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "iliac bone" EXACT [EMAPA:18726] @@ -174407,6 +174987,8 @@ property_value: taxon_notes "All reptiles have an ilium except snakes, although id: UBERON:0001274 name: ischium def: "Endochondral bone that is paired, forming the posterior part of the pelvis, articulating with the pubis and ilium." [VSAO:0005006, VSAO:NI, Wikipedia:Ischium] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ischial bone" EXACT [EMAPA:18727] @@ -174448,6 +175030,8 @@ property_value: has_relational_adjective "ischial" xsd:string id: UBERON:0001275 name: pubis def: "A paired endochondral bone making up the anteroventral region of the tripartite pelvic girdle forming part of the ventral edge of the acetabulum. The origin site of many proximal hindlimb muscles. [PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/68, PHENOSCAPE:ad] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "os pubis" RELATED [Wikipedia:Pubis_(bone)] @@ -174487,6 +175071,8 @@ property_value: external_ontology_notes "isa bone zone in FMA" xsd:string {exter id: UBERON:0001276 name: epithelium of stomach def: "The epithelial layer of the stomach ." [MP:0000471] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epithelial tissue of stomach" EXACT [OBOL:automatic] synonym: "epithelial tissue of ventriculus" EXACT [OBOL:automatic] @@ -174519,6 +175105,8 @@ property_value: external_ontology_notes "in FMA this is classified as simple col id: UBERON:0001277 name: intestinal epithelium def: "Epithelial layer that lines the intestine." [UBERON:cjm] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -174556,6 +175144,8 @@ property_value: external_definition "Simple columnar epithelium that lines the i id: UBERON:0001278 name: epithelium of large intestine def: "An epithelium that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of large intestine" EXACT [OBOL:automatic] synonym: "large intestinal epithelium" EXACT [] synonym: "large intestine epithelial tissue" EXACT [OBOL:automatic] @@ -174575,6 +175165,8 @@ id: UBERON:0001279 name: portal triad def: "A multi-organ-part structure that consists of three vessels of the portal lobule including the bile duct, a terminal branch of the hepatic artery and portal vein, and may also include a lymphatic vessel." [http://orcid.org/0000-0002-6601-2165, ISBN:0-683-40008-8, MGI:csmith, MP:0008993] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "trias hepatica" EXACT [] @@ -174601,6 +175193,8 @@ id: UBERON:0001280 name: liver parenchyma alt_id: UBERON:0003223 def: "The functional units of the liver including the lobules." [MP:0008986] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hepatic parenchyma" EXACT [FMA:17540] synonym: "hepatic parenchyme" RELATED [VHOG:0000539] @@ -174632,6 +175226,8 @@ name: hepatic sinusoid alt_id: UBERON:0003275 def: "Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [Wikipedia:Hepatic_sinusoid, ZFIN:curator] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -174674,6 +175270,8 @@ id: UBERON:0001282 name: intralobular bile duct def: "The tubules located between the bile canaliculi and interlobular bile ducts near the outer edge of a classic liver lobule." [MGI:csmith, MP:0009499] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "canal of Hering" RELATED [] @@ -174704,6 +175302,8 @@ property_value: editor_note "Note that this is part of the intrahepatic bile duc id: UBERON:0001283 name: bile canaliculus def: "An intercellular channel that takes up bile from hepatocytes, transporting it to the bile ducts." [MP:0008991] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -174737,6 +175337,8 @@ name: renal column def: "A column of tissue that is histologically identical to tissue found in the renal cortex, and which is located in the medullary region of kidney, between the renal pyramids." [https://orcid.org/0000-0002-1572-1316, PMID:17449786] comment: The renal columns have been thought of as being part of the medulla only because they are located in the inner, medullary region of the kidney, rather than in the outer, cortical region. Histologically, they are extensions of the renal cortex. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "Bertin's column" RELATED [FMA:17633] synonym: "column of Bertin" RELATED [FMA:17633] @@ -174767,6 +175369,8 @@ id: UBERON:0001285 name: nephron def: "The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP]." [PMID:9268568, Wikipedia:Nephron] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -174804,6 +175408,8 @@ property_value: taxon_notes "In the avian kidney, three types of nephron are ide id: UBERON:0001286 name: Bowman's space def: "A narrow chalice-shaped cavity between the glomerular and capsular epithelium of the glomerular capsule of the kidney[TFD]. Between the visceral and parietal layers, into which the filtrate enters after passing through the podocytes' filtration slits[WP]. luminal region between the glomerular capsule visceral and parietal layers, into which filtrate enters after passing through the filtration barrier from the glomerular capillaries[MP]." [http://medical-dictionary.thefreedictionary.com/bowman's+space, MP:0011499, Wikipedia:Bowman's_space] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -174839,6 +175445,8 @@ property_value: external_definition "Space between the renal glomerulus and the id: UBERON:0001287 name: proximal convoluted tubule def: "The proximal convoluted tubule is the most proximal portion of the proximal tubule and extends from the glomerular capsule to the proximal straight tubule." [GO:0072019] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -174878,6 +175486,8 @@ property_value: external_definition "Renal tubule that connects to the renal cor id: UBERON:0001288 name: loop of Henle def: "The section of the renal tubule in the kidney medulla with a hairpin bend; consists of a descending limb and an ascending limb, and is situated between the proximal convoluted tubule to the distal convoluted tubule; it functions to reabsorb water and ions from the urine." [MGI:csmith, MP:0004755] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ansa nephroni" EXACT OMO:0003011 [Wikipedia:Loop_of_Henle] @@ -174915,6 +175525,8 @@ id: UBERON:0001289 name: descending limb of loop of Henle def: "The portion of the renal tubule that constitutes the proximal part of the loop of Henle, has low permeability to ions and urea, and is highly permeable to water; it consists of an initial short thick segment lined by low simple cuboidal epithelium and a long thin segment lined by simple squamous epithelium; however, this distinction is not as important physiologically as in the ascending limb, so often the two are treated as one structure." [MGI:anna, MP:0011341] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "descending limb" BROAD [] @@ -174939,6 +175551,8 @@ name: proximal straight tubule alt_id: UBERON:0005166 def: "The proximal straight tubule is the part of the descending limb that extends from the proximal convoluted tubule to the descending thin tubule." [GO:0072020] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "pars recta" RELATED [] @@ -174973,6 +175587,8 @@ id: UBERON:0001291 name: thick ascending limb of loop of Henle def: "The distal sub-portion of the ascending loop of Henle which is lined by simple cuboidal epithelium and enters the renal cortex to empty a hypotonic filtrate into the distal convoluted tubule." [MGI:anna, MP:0011344] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ascending thick limb" EXACT [] @@ -175005,6 +175621,8 @@ id: UBERON:0001292 name: distal convoluted tubule def: "The first segment of the nephron lying just downstream from the loop of Henle, immediately after the macula densa." [GO:0072025] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "distal convoluted renal tubule" EXACT [] @@ -175036,6 +175654,8 @@ property_value: function_notes "in humans it is responsible for the reabsorption id: UBERON:0001293 name: outer medulla of kidney def: "The renal outer medulla is the region of the kidney that lies between the renal cortex and the renal inner medulla[GO]." [DOI:10.1371/journal.pone.0099864, GOC:mtg_kidney_jan10] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "kidney outer medulla" RELATED [BTO:0001746] synonym: "outer renal medulla" EXACT [] @@ -175060,6 +175680,8 @@ id: UBERON:0001294 name: inner medulla of kidney def: "Innermost region of the mammalian kidney." [GO:0072053] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "inner renal medulla" EXACT [] synonym: "inner zone of medulla of kidney" EXACT [] @@ -175088,6 +175710,8 @@ name: endometrium def: "The glandular mucous membrane lining of the uterine cavity that is hormonally responsive during the estrous/menstrual cycle and during pregnancy." [MESH:A05.360.319.679.490, MGI:smb, MP:0004896] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "tunica mucosa (endometrium)" EXACT [FMA:17742] @@ -175131,6 +175755,8 @@ id: UBERON:0001296 name: myometrium def: "The smooth muscle coat of the uterus, which forms the main mass of the organ and surrounds and supports the endometrium." [MESH:A02.633.570.500, MGI:brs, MP:0008256] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "tunica muscularis" RELATED OMO:0003011 [Wikipedia:Myometrium] @@ -175169,6 +175795,8 @@ property_value: homology_notes "In all mammals, the uterus develops as a special id: UBERON:0001297 name: serosa of uterus def: "Outer serosa layer of the uterus." [Wikipedia:Perimetrium] +subset: human_subset +subset: mouse_subset synonym: "perimetrium" EXACT [Wikipedia:Perimetrium] synonym: "serous coat of uterus" EXACT [Wikipedia:Perimetrium] synonym: "serous membrane of uterus" EXACT [OBOL:automatic] @@ -175199,6 +175827,8 @@ id: UBERON:0001298 name: psoas major muscle def: "The psoas major is a long fusiform muscle placed on the side of the lumbar region of the vertebral column and brim of the lesser pelvis. It joins the iliacus muscle to form the iliopsoas. In less than 50 per cent of subjects the psoas major is accompanied by the psoas minor. [WP,unvetted]." [Wikipedia:Psoas_major_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "m. psoas major" RELATED OMO:0003011 [Wikipedia:Psoas_major_muscle] synonym: "psoas major" EXACT [MA:0002358] @@ -175221,6 +175851,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e2/An id: UBERON:0001299 name: glans penis def: "The conic expansion of the corpus spongiosum that forms the head of the penis." [MGI:anna, MP:0009102] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "balanus" RELATED [BTO:0003118] @@ -175252,6 +175884,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/35/M id: UBERON:0001300 name: scrotum def: "The external sac of skin that encloses the testes. It is an extension of the abdomen, and in placentals is located between the penis and anus." [ISBN:0-683-40008-8, MP:0002669, Wikipedia:Scrotum] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: BTO:0003098 @@ -175287,6 +175921,8 @@ id: UBERON:0001301 name: epididymis def: "The elongated structure connected to the posterior surface of the testis that transports, stores, and matures spermatozoa between testis and vas deferens." [MGI:pvb, MP:0002631] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: BTO:0000408 @@ -175326,6 +175962,8 @@ property_value: taxon_notes "A similar, but probably non-homologous, structure i id: UBERON:0001302 name: right fallopian tube def: "A fallopian tube that is part of a right side of organism [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "right oviduct" BROAD [] synonym: "right uterine tube" EXACT [] xref: EMAPA:37369 {source="MA:th"} @@ -175346,6 +175984,8 @@ property_value: taxon_notes "non-functional in monotremes[ISBN:978-0226870137]" id: UBERON:0001303 name: left fallopian tube def: "A fallopian tube that is part of a left side of organism [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left oviduct" BROAD [] synonym: "left uterine tube" EXACT [] xref: EMAPA:37368 {source="MA:th"} @@ -175366,6 +176006,8 @@ id: UBERON:0001304 name: germinal epithelium of ovary def: "Layer of simple cuboidal cells covering surface of ovary[WP]." [PMID:16923182, Wikipedia:Germinal_epithelium_(female), Wikipedia:Talk\:Germinal_epithelium_(female)] comment: Controversial - see article. Requires expert input. Also check BTO placement +subset: human_subset +subset: mouse_subset synonym: "epithelium superficiale (ovarium)" EXACT [] synonym: "female coelomic epithelium" RELATED [EMAPA:17384] synonym: "germinal epithelium (female)" EXACT [Wikipedia:Germinal_epithelium_(female)] @@ -175395,6 +176037,8 @@ id: UBERON:0001305 name: ovarian follicle def: "A spherical aggregation of cells in the ovary that contains a single oocyte[WP,modified]." [http://www.repropedia.org/ovarian-follicle, Wikipedia:Ovarian_follicle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -175439,6 +176083,8 @@ id: UBERON:0001306 name: cumulus oophorus def: "A cluster of cells that project into the cavity of the mature ovarian follicle. It is released with the embedded oocyte during ovulation. In order for fertilization to occur this layer must be penetrated by the spermatocyte. [WP,modified]." [Wikipedia:Cumulus_oophorus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cumulus ovaricus" EXACT OMO:0003011 [FMA:18659] @@ -175461,6 +176107,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3a/Gr id: UBERON:0001307 name: capsule of ovary def: "A capsule that surrounds a female gonad." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ovarian capsule" EXACT [] synonym: "ovary capsule" EXACT [] @@ -175482,6 +176130,8 @@ id: UBERON:0001308 name: external iliac artery def: "The external iliac artery is a large artery in the pelvic region that carries blood to the lower limb. The external iliac artery is a paired artery, meaning there is one on each side of the body: a right external iliac artery and left external iliac artery. The external iliac artery is accompanied by the external iliac vein, which is located posterior to the artery. [WP,unvetted]." [Wikipedia:External_iliac_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria iliaca externa" RELATED OMO:0003011 [Wikipedia:External_iliac_artery] xref: BTO:0004666 @@ -175505,6 +176155,8 @@ id: UBERON:0001309 name: internal iliac artery def: "The internal iliac artery (formerly known as the hypogastric artery) is the main artery of the pelvis. [WP,unvetted]." [Wikipedia:Internal_iliac_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria iliaca interna" RELATED OMO:0003011 [Wikipedia:Internal_iliac_artery] synonym: "hypogastric artery" RELATED [BTO:0004667] @@ -175527,6 +176179,8 @@ id: UBERON:0001310 name: umbilical artery def: "The umbilical artery is a paired artery (with one for each half of the body) that is found in the abdominal and pelvic regions. In the fetus, it extends into the umbilical cord. [WP,unvetted]." [https://github.com/obophenotype/uberon/issues/328, Wikipedia:Umbilical_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "a. umbilicalis" RELATED OMO:0003011 [Wikipedia:Umbilical_artery] @@ -175559,6 +176213,8 @@ id: UBERON:0001311 name: inferior vesical artery def: "An artery that supplies blood to the lower urinary bladder." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria vesicali inferior" EXACT OMO:0003011 [Wikipedia:Inferior_vesical_artery] synonym: "arteria vesicalis inferior" EXACT OMO:0003011 [Wikipedia:Inferior_vesical_artery] @@ -175586,6 +176242,8 @@ id: UBERON:0001312 name: superior vesical artery def: "An artery that supplies blood to the upper urinary bladder." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria vesicali superior" EXACT OMO:0003011 [Wikipedia:Superior_vesical_artery] synonym: "arteria vesicalis superior" EXACT OMO:0003011 [Wikipedia:Superior_vesical_artery] @@ -175613,6 +176271,8 @@ id: UBERON:0001313 name: iliolumbar artery def: "The iliolumbar artery is a branch of the posterior trunk of the internal iliac artery. [WP,unvetted]." [Wikipedia:Iliolumbar_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria iliolumbalis" RELATED OMO:0003011 [Wikipedia:Iliolumbar_artery] synonym: "ilio-lumbar artery" EXACT [] @@ -175634,6 +176294,8 @@ id: UBERON:0001314 name: obturator artery def: "The obturator artery passes antero-inferiorly (forwards and downwards) on the lateral wall of the pelvis, to the upper part of the obturator foramen, and, escaping from the pelvic cavity through the obturator canal, it divides into both an anterior and a posterior branch. [WP,unvetted]." [Wikipedia:Obturator_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria obturatoria" RELATED OMO:0003011 [Wikipedia:Obturator_artery] xref: EMAPA:37671 {source="MA:th"} @@ -175654,6 +176316,8 @@ id: UBERON:0001315 name: superior gluteal artery def: "The superior gluteal artery (gluteal artery) is the largest branch of the internal iliac artery, and appears to be the continuation of the posterior division of that vessel. It is a short artery which runs backward between the lumbosacral trunk and the first sacral nerve, and, passing out of the pelvis above the upper border of the Piriformis, immediately divides into a superficial and a deep branch. Within the pelvis it gives off a few branches to the Iliacus, Piriformis, and Obturator internus, and just previous to quitting that cavity, a nutrient artery which enters the ilium. [WP,unvetted]." [Wikipedia:Superior_gluteal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria glutea superior" RELATED OMO:0003011 [Wikipedia:Superior_gluteal_artery] synonym: "arteria glutealis superior" EXACT [] @@ -175679,6 +176343,8 @@ id: UBERON:0001316 name: external iliac vein def: "A large vein that connects the femoral vein to the common iliac vein. Their origin is at the inferior margin of the inguinal ligaments and they terminate when they join the internal iliac veins (to form the common iliac veins). Both external iliac veins are accompanied along their course by external iliac arteries. [WP,modified]." [Wikipedia:External_iliac_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "vena iliaca externa" RELATED OMO:0003011 [Wikipedia:External_iliac_vein] xref: EHDAA2:0000464 @@ -175702,6 +176368,8 @@ id: UBERON:0001317 name: internal iliac vein def: "A vein that begins near the upper part of the greater sciatic foramen, passes upward behind and slightly medial to the hypogastric artery and, at the brim of the pelvis, joins with the external iliac to form the common iliac vein. [WP,unvetted]." [Wikipedia:Internal_iliac_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "hypogastric vein" RELATED [MA:0002139, Wikipedia:Internal_iliac_vein] synonym: "v. hypogastrica" RELATED OMO:0003011 [Wikipedia:Internal_iliac_vein] @@ -175729,6 +176397,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0001318 name: inferior vesical vein subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:37158 {source="MA:th"} xref: FMA:18890 xref: MA:0002264 @@ -175744,6 +176414,8 @@ id: UBERON:0001319 name: vaginal vein def: "One the veins that drains the vaginal venous plexus, into the hypogastric veins. [WP,modified]." [Wikipedia:Vaginal_venous_plexus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "vagina vein" EXACT [OBOL:automatic] synonym: "vein of vagina" EXACT [OBOL:automatic] @@ -175766,6 +176438,8 @@ id: UBERON:0001320 name: iliolumbar vein def: "The iliolumbar vein is the vena comitans of the iliolumbar artery. The obturator nerve crosses superficial to it. A single vein is found more commonly than a double vein. It drains vertebral segments four and five. It is closely related to the ascending lumbar vein. [WP,unvetted]." [Wikipedia:Iliolumbar_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "ilio-lumbar vein" EXACT [] synonym: "vena iliolumbalis" RELATED OMO:0003011 [Wikipedia:Iliolumbar_vein] @@ -175789,6 +176463,8 @@ id: UBERON:0001321 name: obturator vein def: "The obturator vein begins in the upper portion of the adductor region of the thigh and enters the pelvis through the upper part of the obturator foramen, in the obturator canal. It runs backward and upward on the lateral wall of the pelvis below the obturator artery, and then passes between the ureter and the hypogastric artery, to end in the hypogastric vein. It has an anterior and posterior branch (similar to obturator artery). [WP,unvetted]." [Wikipedia:Obturator_veins] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: EMAPA:37677 {source="MA:th"} xref: FMA:18914 @@ -175809,6 +176485,8 @@ name: sciatic nerve def: "A large nerve that supplies nearly the whole of the skin of the leg, the muscles of the back of the thigh, and those of the leg and foot. It begins in the lower back and runs through the buttock and down the lower limb." [Wikipedia:Sciatic_nerve] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ischiadic nerve" RELATED [Wikipedia:Sciatic_nerve] @@ -175843,6 +176521,8 @@ property_value: taxon_notes "mouse sciatic nerve origins predominantly from the id: UBERON:0001323 name: tibial nerve def: "The tibial nerve is a branch of the sciatic nerve. The tibial nerve passes through the popliteal fossa to pass below the arch of soleus. In the popliteal fossa the nerve gives off branches to gastrocnemius, popliteus, soleus and plantaris muscles, an articular branch to the knee joint, and a cutaneous branch that will become the sural nerve. The sural nerve is joined by fibres from the common peroneal nerve and runs down the calf to supply the lateral side of the foot. Below the soleus muscle the nerve lies close to the tibia and supplies the tibialis posterior, the flexor digitorum longus and the flexor hallucis longus. The nerve passes into the foot running posterior to the medial malleolus. Here it is bound down by the flexor retinaculum in company with the posterior tibial artery. [WP,unvetted]." [Wikipedia:Tibial_nerve] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "medial popliteal nerve" EXACT [] synonym: "n. tibialis" RELATED OMO:0003011 [Wikipedia:Tibial_nerve] @@ -175867,6 +176547,8 @@ id: UBERON:0001324 name: common fibular nerve def: "A nerve arising at the terminal division of the sciatic nerve at the popliteal fossa and extending to the neck of the fibula, ultimately innervating the Peroneus muscle[MP]." [MP:0011211] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "common peroneal nerve" EXACT [] @@ -175898,6 +176580,8 @@ property_value: structure_notes "derives into deep and superficial branches" xsd id: UBERON:0001325 name: muscle of pelvis def: "Muscle (organ) which is a part of the pelvis. Examples: levator ani,." [FMA:19086] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "muscle organ of pelvis" EXACT [OBOL:automatic] @@ -175917,6 +176601,8 @@ relationship: part_of UBERON:0002355 ! pelvic region of trunk id: UBERON:0001326 name: levator ani muscle def: "The Levator ani is a broad, thin muscle, situated on the side of the pelvis. It is attached to the inner surface of the side of the lesser pelvis, and unites with its fellow of the opposite side to form the greater part of the floor of the pelvic cavity. It supports the viscera in pelvic cavity, and surrounds the various structures which pass through it. In combination with the Coccygeus muscle, it forms the pelvic diaphragm. [WP,unvetted]." [Wikipedia:Levator_ani] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "levator ani" EXACT [MA:0002332] synonym: "musculus levator ani" EXACT OMO:0003011 [Wikipedia:Levator_ani] @@ -175937,6 +176623,8 @@ id: UBERON:0001327 name: coccygeus muscle def: "The Coccygeus is a muscle of the pelvic wall (i.e. peripheral to the pelvic floor), situated behind the levator ani and in front of the sacrospinous ligament. It is a triangular plane of muscular and tendinous fibers, arising by its apex from the spine of the ischium and sacrospinous ligament, and inserted by its base into the margin of the coccyx and into the side of the lowest piece of the sacrum. It assists the Levator ani and Piriformis in closing in the back part of the outlet of the pelvis. [WP,unvetted]." [Wikipedia:Coccygeus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: uberon_slim synonym: "coccygeus" EXACT [MA:0002277] @@ -175961,6 +176649,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/63/Gr id: UBERON:0001328 name: lobe of prostate def: "A portion of a prostate that forms a lobe." [https://github.com/obophenotype/uberon/issues/665] +subset: human_subset +subset: mouse_subset synonym: "lobe of prostate gland" EXACT [] synonym: "prostate gland lobe" EXACT [] synonym: "prostatic lobe" EXACT [] @@ -175986,6 +176676,8 @@ property_value: taxon_notes "Anatomically, the human prostate gland is located b [Term] id: UBERON:0001329 name: prostate gland anterior lobe +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior lobe of prostate" EXACT [FMA:19574] synonym: "anterior lobe of prostate gland" EXACT [] @@ -176012,6 +176704,8 @@ id: UBERON:0001330 name: pampiniform plexus def: "The pampiniform plexus is a network of many small veins found in the male spermatic cord. It is formed by the union of multiple spermatic veins from the back of the testis and tributaries from the epididymis. The veins of the plexus ascend along the cord in front of the ductus deferens. Below the subcutaneous inguinal ring they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins. These again unite to form a single vein, the testicular vein, which opens on the right side into the inferior vena cava, at an acute angle, and on the left side into the left renal vein, at a right angle. The pampinoform plexus forms the chief mass of the cord. In addition to its function in venous return from the testes, the pampiniform plexus also plays a role in the temperature regulation of the testes. It acts as a heat exchanger, cooling blood in adjacent arteries. An abnormal enlargement of the pampiniform plexus is a medical condition called varicocele. [WP,unvetted]." [Wikipedia:Pampiniform_venous_plexus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "pampiniform venous plexus" EXACT [] synonym: "plexus of veins of fascia of prostate" EXACT [] @@ -176034,6 +176728,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/af/Gr id: UBERON:0001331 name: skin of penis def: "A zone of skin that is part of a penis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "penile skin" EXACT [FMA:19638] synonym: "penis skin" EXACT [] synonym: "penis zone of skin" EXACT [OBOL:automatic] @@ -176055,6 +176751,8 @@ id: UBERON:0001332 name: prepuce of penis def: "A retractable double-layered fold of skin and mucous membrane that covers the glans penis and protects the urinary meatus when the penis is not erect." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Foreskin] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "foreskin" RELATED [FMA:19639] @@ -176089,6 +176787,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/e/e6/F id: UBERON:0001333 name: male urethra def: "A urethra that is part of a male reproductive system." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: BTO:0004089 @@ -176109,6 +176809,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/cb/F id: UBERON:0001334 name: female urethra def: "A urethra that is part of a female reproductive system." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "urethra feminina" RELATED [BTO:0004088] @@ -176131,6 +176833,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/cb/F id: UBERON:0001335 name: prostatic urethra def: "The widest and most dilatable part of the male urethra canal which runs almost vertically through the prostate from its base to its apex, lying nearer its anterior than its posterior surface; this portion of the urethral canal is spindle-shaped, being wider in the middle than at either extremity, and narrowest below, where it joins the membranous portion; it is lined by transitional epithelium and contains in its posterior wall, or floor, the orifices of the prostatic utricle, ejaculatory ducts, and prostatic ducts, collectively known as the seminal colliculus (aka verumontanum)." [MGI:anna, MP:0011777] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "male prostatic urethra" EXACT [MP:0011777] @@ -176156,6 +176860,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gr [Term] id: UBERON:0001336 name: membranous urethra of male or female +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "intermediate part of urethra" EXACT [] synonym: "intermediate urethra" EXACT [] @@ -176174,6 +176880,8 @@ property_value: external_ontology_notes "MA class sex-neutral" xsd:string {exter id: UBERON:0001337 name: spongiose part of urethra def: "The longest part of the male urethra contained in the corpus spongiosum and extending from the end of the membranous portion to the external urethral orifice; commencing below the inferior fascia of the urogenital diaphragm it passes forward and upward to the front of the symphysis pubis; and then, in the flaccid condition of the penis, it bends downward and forward; while narrow and of uniform size in the body of the penis, it is dilated behind, within the bulb, and again anteriorly within the glans penis, where it forms the fossa navicularis urethrae; the spongy urethra is lined by pseudostratified columnar epithelium proximally, and by stratified squamous epithelium distally." [MGI:anna, MP:0011779] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cavernous portion of male urethra" EXACT [MP:0011779] @@ -176204,6 +176912,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gr id: UBERON:0001338 name: urethral gland def: "Any of the numerous small mucous-secreting glands located in the wall of the male or female urethra that help protect the epithelium from the corrosive urine." [MP:anna] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -176230,6 +176940,8 @@ id: UBERON:0001339 name: ischiocavernosus muscle def: "The ischiocavernosus muscle is a muscle just below the surface of the perineum, present in both men and women. [WP,unvetted]." [Wikipedia:Ischiocavernosus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: uberon_slim synonym: "erector penis" RELATED [Wikipedia:Ischiocavernosus_muscle] @@ -176256,6 +176968,8 @@ id: UBERON:0001340 name: dorsal artery of penis def: "The Dorsal Artery of the Penis ascends between the crus penis and the pubic symphysis, and, piercing the inferior fascia of the urogenital diaphragm, passes between the two layers of the suspensory ligament of the penis, and runs forward on the dorsum of the penis to the glans, where it divides into two branches, which supply the glans and prepuce. On the penis, it lies between the dorsal nerve and deep dorsal vein, the former being on its lateral side. It supplies the integument and fibrous sheath of the corpus cavernosum penis, sending branches through the sheath to anastomose with the deep artery of the penis. [WP,unvetted]." [Wikipedia:Dorsal_artery_of_penis] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria dorsalis penis" EXACT [BTO:0005088] synonym: "dorsal artery of the penis" RELATED [BTO:0005088] @@ -176281,6 +176995,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gr id: UBERON:0001341 name: lesser sac def: "The lesser sac, also known as the omental bursa, is the cavity in the abdomen that is formed by the lesser and greater omentum. Usually found in mammals, it is connected with the greater sac via the epiploic foramen (also known as the Foramen of Winslow). [WP,unvetted]." [Wikipedia:Lesser_sac] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "bursa omentalis" EXACT OMO:0003011 [FMA:19800, FMA:TA] synonym: "omental bursa" EXACT [] @@ -176308,6 +177024,8 @@ id: UBERON:0001342 name: mesovarium def: "The mesentery that suspends the ovary from the dorsal wall of the coelom[VHOG]." [VHOG:0001566, Wikipedia:Mesovarium] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "mesovarian ligament" RELATED [] @@ -176336,6 +177054,8 @@ id: UBERON:0001343 name: seminiferous tubule of testis def: "The tubules in the testes where spermatogenesis occurs." [https://github.com/obophenotype/uberon/issues/1381, ISBN:0-683-40008-8, MGI:csmith, MP:0002216] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "seminiferous cord" EXACT [EMAPA:18685] @@ -176381,6 +177101,8 @@ property_value: homology_notes "Frogs among amphibians and the amniotes have mal id: UBERON:0001344 name: epithelium of vagina def: "The epithelial layer of the vagina." [MP:0001140] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epithelial tissue of vagina" EXACT [OBOL:automatic] synonym: "epithelium, vaginal" RELATED [BTO:0000422] @@ -176416,6 +177138,8 @@ consider: UBERON:0000052 id: UBERON:0001346 name: vaginal hymen def: "A membrane that surrounds or partially covers the vaginal opening." [Wikipedia:Hymen] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hymen" BROAD [MESH:A05.360.319.779.479] synonym: "hymen of vagina" EXACT [FMA:20005] @@ -176441,6 +177165,8 @@ id: UBERON:0001347 name: white adipose tissue def: "Connective tissue consisting of fat-storing cells and arranged in lobular groups or along minor blood vessels[MP,modified]." [ISBN:0-683-40008-8, MP:0005670] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "adipocytus unigutturalis" EXACT [] @@ -176471,6 +177197,8 @@ id: UBERON:0001348 name: brown adipose tissue def: "A thermogenic form of adipose tissue that is composed of brown adipocytes[MP,modified]." [MGI:smb, MP:0011698] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "adipocytus multigutturalis" EXACT [] @@ -176507,6 +177235,8 @@ property_value: taxon_notes "especially abundant in newborns and in hibernating id: UBERON:0001349 name: externally connecting tube lumen def: "Anatomical cavity that connects an organ cavity, organ cavity subdivision or cavity of body part subdivision to the exterior, completely or partially surrounded by organs or organ parts that are lined by epithelium. Examples: preputial cavity, vestibule of vagina.[FMA]." [FMA:20192] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "vestibule" RELATED [FMA:20192] xref: FMA:20192 @@ -176518,6 +177248,8 @@ id: UBERON:0001350 name: coccyx def: "A collection of caudal vertebrae in the coccygeal region that are fused and part of the bony pelvis." [https://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -176544,11 +177276,11 @@ is_a: UBERON:0004247 ! bone of dorsum is_a: UBERON:0006076 ! caudal region of vertebral column is_a: UBERON:0008001 {source="FMA"} ! irregular bone intersection_of: UBERON:0006076 ! caudal region of vertebral column -intersection_of: derived_from_ancestral_fusion_of UBERON:0001095 ! caudal vertebra +intersection_of: has_fused_element UBERON:0001095 ! caudal vertebra intersection_of: part_of UBERON:0001270 ! bony pelvis relationship: anteriorly_connected_to UBERON:0003690 {gci_relation="part_of", gci_filler="NCBITaxon:9606", source="FMA"} ! fused sacrum -relationship: derived_from_ancestral_fusion_of UBERON:0001095 ! caudal vertebra relationship: develops_from UBERON:0007144 ! embryonic post-anal tail +relationship: has_fused_element UBERON:0001095 ! caudal vertebra relationship: part_of UBERON:0001270 {source="FMA"} ! bony pelvis relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Gray100.png" xsd:anyURI @@ -176562,6 +177294,8 @@ property_value: taxon_notes "In humans: The coccyx, commonly referred to as the id: UBERON:0001351 name: lacrimal sac def: "The upper dilated end of the nasolacrimal duct that is lodged in a deep groove formed by the lacrimal bone and frontal process of the maxilla; it connects the lacrimal canaliculi, which drain tears from the eye's surface, and the nasolacrimal duct, which conveys this fluid into the nasal cavity; like the nasolacrimal duct, the sac is lined by stratified columnar epithelium with mucus-secreting goblet cells, and is surrounded by connective tissue." [MGI:anna] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "lachrymal sac" EXACT [] @@ -176582,6 +177316,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/cf/Gr id: UBERON:0001352 name: external acoustic meatus def: "A tube running from the outer ear to the middle ear. The human ear canal extends from the pinna to the eardrum and is about 26 mm in length and 7 mm in diameter." [Wikipedia:External_acoustic_meatus] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "auditory canal" EXACT [] @@ -176621,6 +177357,8 @@ id: UBERON:0001353 name: anal region def: "The anus and surrounding regions. Encompasses both internal and external regions, where present." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "posterior" RELATED [] @@ -176649,6 +177387,8 @@ id: UBERON:0001354 name: inferior epigastric artery def: "The artery that arises from the external iliac artery and anastomoses with the superior epigastric artery." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Inferior_epigastric_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria epigastrica inferior" RELATED OMO:0003011 [Wikipedia:Inferior_epigastric_artery] xref: EMAPA:18751 @@ -176672,6 +177412,8 @@ id: UBERON:0001355 name: deep femoral artery def: "The profunda femoris artery (also known as the deep femoral artery, or the deep artery of the thigh) is a branch of the femoral artery that, as its name suggests, travels more deeply (posteriorly) than the rest of the femoral artery. [WP,unvetted]." [Wikipedia:Deep_femoral_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria profunda femoris" EXACT [] synonym: "profunda femoris artery" EXACT [] @@ -176697,6 +177439,8 @@ id: UBERON:0001356 name: medial circumflex femoral artery def: "The medial circumflex femoral artery (internal circumflex artery, medial femoral circumflex artery) is an artery in the upper thigh that helps supply blood to the neck of the femur. [WP,unvetted]." [Wikipedia:Medial_circumflex_femoral_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria circumflexa femoris medialis" RELATED OMO:0003011 [Wikipedia:Medial_circumflex_femoral_artery] synonym: "medial femoral circumflex artery" EXACT [] @@ -176719,6 +177463,8 @@ id: UBERON:0001357 name: inferior rectal artery def: "The inferior rectal artery (inferior hemorrhoidal artery) is an artery that supplies blood to the lower half of the anal canal. [WP,unvetted]." [Wikipedia:Inferior_rectal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria haemorrhoidalis inferior" RELATED OMO:0003011 [Wikipedia:Inferior_rectal_artery] synonym: "arteria rectalis inferior" RELATED OMO:0003011 [Wikipedia:Inferior_rectal_artery] @@ -176752,6 +177498,8 @@ id: UBERON:0001358 name: perineal artery def: "The perineal artery (superficial perineal artery) arises from the internal pudendal artery, and turns upward, crossing either over or under the Transversus perinæi superficialis, and runs forward, parallel to the pubic arch, in the interspace between the Bulbocavernosus and Ischiocavernosus, both of which it supplies, and finally divides into several posterior scrotal branches which are distributed to the skin and dartos tunic of the scrotum. As it crosses the Transversus perinæi superficialis it gives off the transverse perineal artery which runs transversely on the cutaneous surface of the muscle, and anastomoses with the corresponding vessel of the opposite side and with the perineal and inferior hemorrhoidal arteries. It supplies the Transversus perinæi superficialis and the structures between the anus and the urethral bulb. [WP,unvetted]." [Wikipedia:Perineal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria perinei" RELATED OMO:0003011 [Wikipedia:Perineal_artery] synonym: "superficial perineal artery" NARROW [Wikipedia:Perineal_artery] @@ -176773,6 +177521,8 @@ id: UBERON:0001359 name: cerebrospinal fluid def: "A clear, colorless, bodily fluid, that occupies the subarachnoid space and the ventricular system around and inside the brain and spinal cord." [Wikipedia:Cerebrospinal_fluid] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -176813,6 +177563,8 @@ id: UBERON:0001360 name: deep circumflex iliac vein def: "A vein that corresponds to the deep circumflex iliac artery and empties near or in a common trunk with the inferior epigastric vein into the external iliac vein; deep circumflex iliac vein." [http://medical-dictionary.thefreedictionary.com/circumflex+iliac+vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "circumflex iliac vein" EXACT [] synonym: "deep iliac circumflex vein" EXACT [] @@ -176836,6 +177588,8 @@ id: UBERON:0001361 name: femoral vein def: "In the human body, the femoral vein is a blood vessel that accompanies the femoral artery in the femoral sheath. It begins at the adductor canal (also known as Hunter's canal) and is a continuation of the popliteal vein. It ends at the inferior margin of the inguinal ligament, where it becomes the external iliac vein. [WP,unvetted]." [Wikipedia:Femoral_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "vena femoralis" RELATED OMO:0003011 [Wikipedia:Femoral_vein] xref: AAO:0010237 @@ -176860,6 +177614,8 @@ property_value: external_definition "Either of the primary veins in the hindlimb id: UBERON:0001362 name: perineal vein subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:37179 {source="MA:th"} xref: FMA:21246 xref: MA:0002193 @@ -176874,6 +177630,8 @@ id: UBERON:0001363 name: great saphenous vein def: "The great saphenous vein (GSV), also greater saphenous vein, is the large (subcutaneous) superficial vein of the leg and thigh. The terms 'safaina' (Greek) and 'el safin' (Arabic) have both been claimed as the origin for the word 'saphenous'. [WP,unvetted]." [Wikipedia:Great_saphenous_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "greater saphenous vein" EXACT [] synonym: "large saphenous vein" RELATED [BTO:0003271] @@ -176908,6 +177666,8 @@ consider: ZFA:0000271 id: UBERON:0001365 name: sacro-iliac joint def: "The joint in the bony pelvis between the sacrum and the ilium of the pelvis, which are joined by strong ligaments." [Wikipedia:Sacroiliac_joint] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "articulatio sacro-iliaca" EXACT [] @@ -176938,6 +177698,8 @@ id: UBERON:0001366 name: parietal peritoneum alt_id: UBERON:0004459 def: "The outer layer of peritoneum that is attached to the abdominal and pelvic walls." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Peritoneum#Types] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "parietal serous membrane of peritoneum" EXACT [UBERON:cjm] @@ -176965,6 +177727,8 @@ name: external anal sphincter def: "The Sphincter ani externus (external anal sphincter) is a flat plane of muscular fibers, elliptical in shape and intimately adherent to the integument surrounding the margin of the anus. [WP,unvetted]." [Wikipedia:Sphincter_ani_externus_muscle] comment: Some literature reports don't consider the external anal sphincter to be a true sphincter muscle. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "external sphincter ani" EXACT [] @@ -176992,6 +177756,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2344" xsd id: UBERON:0001368 name: obturator externus def: "An adductor muscle that attaches to the femur and the pelvis. In humans, the obturator externus muscle is a flat, triangular muscle, which covers the outer surface of the anterior wall of the pelvis. It is sometimes considered part of the medial compartment of thigh, and sometimes considered part of the gluteal region. [WP,generalized]." [Wikipedia:Obturator_externus_muscle] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "external obturator" EXACT [] synonym: "external obturator" RELATED [Wikipedia:Obturator_externus_muscle] @@ -177025,6 +177791,8 @@ id: UBERON:0001369 name: iliacus muscle def: "The iliacus is a flat, triangular muscle, which fills the iliac fossa. [WP,unvetted]." [Wikipedia:Iliacus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "anterior muscle of pelvic girdle" EXACT [] synonym: "iliacus" EXACT [MA:0002318] @@ -177051,6 +177819,8 @@ id: UBERON:0001370 name: gluteus maximus def: "The largest and most superficial of the three gluteal muscles [WP,unvetted]." [Wikipedia:Gluteus_maximus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "glutaeus maximus muscle" RELATED [Wikipedia:Gluteus_maximus_muscle] synonym: "gluteus maximus muscle" EXACT [Wikipedia:Gluteus_maximus_muscle] @@ -177082,6 +177852,8 @@ property_value: taxon_notes "In humans, it makes up a large portion of the shape id: UBERON:0001371 name: gluteus medius def: "One of three gluteal muscles, is a broad, thick, radiating muscle, situated on the outer surface of the pelvis. Its posterior third is covered by the gluteus maximus, its anterior two-thirds by the gluteal aponeurosis, which separates it from the superficial fascia and integument. [WP,unvetted]." [Wikipedia:Gluteus_medius_muscle] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "gluteus medius muscle" RELATED [Wikipedia:Gluteus_medius_muscle] synonym: "musculus gluteus medius" RELATED OMO:0003011 [Wikipedia:Gluteus_medius_muscle] @@ -177107,6 +177879,8 @@ name: psoas minor muscle def: "The psoas minor is a long, slender skeletal muscle that, when present, is placed in front of the psoas major muscle. [WP,unvetted]." [Wikipedia:Psoas_minor_muscle] comment: Human variation notes: It is absent in 40% of individuals. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "m. psoas minor" RELATED OMO:0003011 [Wikipedia:Psoas_minor_muscle] synonym: "psoas minor" EXACT [MA:0002359] @@ -177129,6 +177903,8 @@ id: UBERON:0001373 name: sartorius muscle def: "The Sartorius muscle - the longest muscle in the human body - is a long thin muscle that runs down the length of the thigh. Its upper portion forms the lateral border of the femoral triangle." [Wikipedia:Sartorius_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "ambliens" RELATED SENSU [] synonym: "M. sartorius" RELATED [] @@ -177165,6 +177941,8 @@ name: biceps femoris def: "The biceps femoris is a muscle of the posterior (the back) thigh. As its name implies, it has two parts, one of which (the long head) forms part of the hamstrings muscle group. [WP,unvetted]." [Wikipedia:Biceps_femoris_muscle] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "biceps femoris muscle" EXACT [BTO:0003418] synonym: "musculus biceps femoris" RELATED OMO:0003011 [Wikipedia:Biceps_femoris_muscle] @@ -177192,6 +177970,8 @@ id: UBERON:0001375 name: semitendinosus def: "The semitendinosus is a muscle in the back of the thigh; it is one of the hamstrings. [WP,unvetted]." [Wikipedia:Semitendinosus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus semitendinosus" RELATED OMO:0003011 [BTO:0001236, Wikipedia:Semitendinosus_muscle] synonym: "semitendinosus muscle" EXACT [] @@ -177215,6 +177995,8 @@ property_value: taxon_notes "A&P heads in rat, single head in humans[DOI:10.1002 id: UBERON:0001376 name: tensor fasciae latae muscle def: "The tensor fasciae latae or tensor fasciæ latæ is a muscle of the thigh. [WP,unvetted]." [Wikipedia:Tensor_fasciae_latae_muscle] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus tensor fasciae latae" EXACT OMO:0003011 [FMA:22423, FMA:TA, Wikipedia:Tensor_fasciae_latae_muscle] synonym: "tensor fasciae lata" EXACT [MA:0002391] @@ -177239,6 +178021,8 @@ name: quadriceps femoris def: "One of the muscles belong to the group consisting of the rectus femoris and the three heads of the vastus (lateralis, medialis, intermedius)." [ISBN:0073040584] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "musculus quadriceps femoris" RELATED OMO:0003011 [BTO:0001149, Wikipedia:Quadriceps_femoris_muscle] @@ -177280,6 +178064,8 @@ id: UBERON:0001378 name: rectus femoris def: "The Rectus femoris muscle is one of the four quadriceps muscles of the human body. (The others are the vastus medialis, the vastus intermedius, and the vastus lateralis. All four combine to form the quadriceps tendon, which inserts into the patella and continues as the patellar ligament. ) The Rectus femoris is situated in the middle of the front of the thigh; it is fusiform in shape, and its superficial fibers are arranged in a bipenniform manner, the deep fibers running straight down to the deep aponeurosis. [WP,unvetted]." [Wikipedia:Rectus_femoris_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus rectos femoris" EXACT [] xref: BTO:0001564 @@ -177304,6 +178090,8 @@ name: vastus lateralis def: "The Vastus lateralis (Vastus externus) is the largest part of the Quadriceps femoris. It arises by a broad aponeurosis, which is attached to the upper part of the intertrochanteric line, to the anterior and inferior borders of the greater trochanter, to the lateral lip of the gluteal tuberosity, and to the upper half of the lateral lip of the linea aspera; this aponeurosis covers the upper three-fourths of the muscle, and from its deep surface many fibers take origin. A few additional fibers arise from the tendon of the Glutæus maximus, and from the lateral intermuscular septum between the Vastus lateralis and short head of the Biceps femoris. The fibers form a large fleshy mass, which is attached to a strong aponeurosis, placed on the deep surface of the lower part of the muscle: this aponeurosis becomes contracted and thickened into a flat tendon inserted into the lateral border of the patella, blending with the Quadriceps femoris tendon, and giving an expansion to the capsule of the knee-joint. [WP,unvetted]." [Wikipedia:Vastus_lateralis] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "lateralis" BROAD [] synonym: "vastus externus" RELATED [BTO:0001563] @@ -177327,6 +178115,8 @@ id: UBERON:0001380 name: vastus medialis def: "The vastus medialis, often called the 'teardrop' muscle, is a medially located muscle of the quadriceps. [WP,unvetted]." [Wikipedia:Vastus_medialis] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "medialis" BROAD [] synonym: "vastus internus" RELATED [BTO:0004913] @@ -177351,6 +178141,8 @@ id: UBERON:0001381 name: semimembranosus muscle def: "The semimembranosus is a muscle in the back of the thigh. It is the most medial of the three hamstring muscles. [WP,unvetted]." [Wikipedia:Semimembranosus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus semimembranosus" EXACT OMO:0003011 [BTO:0003177] synonym: "semimembranosus" EXACT [MA:0002371] @@ -177371,6 +178163,8 @@ id: UBERON:0001382 name: pectineus muscle def: "An adductor muscle that attaches to the pelvic bone and the femur. In humans, The pectineus muscle is a flat, quadrangular muscle, situated at the anterior part of the upper and medial aspect of the thigh. It can be classified in the medial compartment of thigh (when the function is emphasized) or the anterior compartment of thigh (when the nerve is emphasized). [WP,generalized]." [Wikipedia:Pectineus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "M. pectineus" EXACT [AAO:0010036] synonym: "musculus pectineus" RELATED OMO:0003011 [Wikipedia:Pectineus_muscle] @@ -177401,6 +178195,8 @@ name: muscle of leg alt_id: UBERON:0003270 def: "A muscle that is part of the region of the hindlimb between the pelvis and ankle." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Leg_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "leg muscle" EXACT [] @@ -177432,6 +178228,8 @@ name: primary motor cortex def: "The part of the cerebral cortex that receives projections from the motor thalamus and which projects to motor neurons in the brainstem and spinal cord. The motor cortex corresponds to Brodmann's area 4 (MM). The primary motor cortex, or M1, is located on the precentral gyrus and on the anterior paracentral lobule on the medial surface of the brain. Of the three motor cortex areas, stimulation of the primary motor cortex requires the least amount of electrical current to elicit a movement. http://neuroscience.uth.tmc.edu/s3/chapter03.html." [NLX:143555] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "excitable area" RELATED [BTO:0004348] @@ -177478,6 +178276,8 @@ id: UBERON:0001385 name: tibialis anterior def: "A muscle that originates in the upper two-thirds of the lateral surface of the tibia and inserts into the medial cuneiform and first metatarsal bones of the foot. Its acts to invert the foot. It is situated on the lateral side of the tibia; it is thick and fleshy above, tendinous below. This muscle overlaps the anterior tibial vessels and deep peroneal nerve in the upper part of the leg. [WP,unvetted]. The M. tibialis cranialis is a muscle that flexes the tarsometatarsus. It originates on the craniodistal aspect of the femur and proximal tibiotarsus and inserts on the cranial surface of the tarsometarsus[EvoWiki]." [http://evolutionwiki.org/wiki/M._tibialis_cranialis, Wikipedia:Tibialis_anterior_muscle] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "anterior tibialis" RELATED [BTO:0001382] @@ -177509,6 +178309,8 @@ id: UBERON:0001386 name: extensor digitorum longus def: "A penniform muscle of the lateral front part of the hindlimb responsible for extension of the digits and dorsiflexion of the ankle." [MP:0004246] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "extensor digitorum longus muscle" EXACT [BTO:0000436] @@ -177537,6 +178339,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gr id: UBERON:0001387 name: fibularis longus def: "A superficial muscle in the lateral compartment of the leg, and acts to evert and plantar flex the ankle. It is situated at the upper part of the lateral side of the leg, and is the most superficial of the three peroneus muscles. It is innervated by the superficial fibular nerve (superficial peroneal nerve). [WP,unvetted]." [Wikipedia:Peroneus_longus] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "fibularis longus" RELATED [Wikipedia:Peroneus_longus] @@ -177568,6 +178372,8 @@ name: gastrocnemius def: "The most superficial muscle of the triceps surae group, in the posterior portion of the lower hindleg." [http://orcid.org/0000-0002-6601-2165, ISBN:0073040584, MP:0013188] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "gastrocnemius muscle" EXACT [BTO:0000506] @@ -177610,6 +178416,8 @@ name: soleus muscle def: "A deep muscle of the triceps surae group, in the superficial posterior compartment of the leg." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Soleus_muscle] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "soleus" EXACT [MA:0002424] @@ -177641,6 +178449,8 @@ id: UBERON:0001390 name: sural artery def: "The sural arteries (inferior muscular arteries) are two large branches, which are distributed to the Gastrocnemius, Soleus, and Plantaris. The term applies to any of four or five arteries arising from the popliteal artery, with distribution to the muscles and integument of the calf, and with anastomoses to the posterior tibial, medial and lateral inferior genicular arteries. [WP,unvetted]." [Wikipedia:Sural_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: EMAPA:37125 {source="MA:th"} xref: FMA:22570 @@ -177660,6 +178470,8 @@ id: UBERON:0001391 name: popliteus muscle def: "The popliteus muscle in the leg is used to unlock the knee by laterally rotating the femur on the tibia during a closed chain movement (such as one with the foot in contact with the ground). [WP,unvetted]." [Wikipedia:Popliteus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "m.popliteus" EXACT [] synonym: "musculus popliteus" RELATED OMO:0003011 [Wikipedia:Popliteus_muscle] @@ -177686,6 +178498,8 @@ id: UBERON:0001392 name: flexor hallucis longus def: "A deep muscle of the posterior compartment of the hindlimb that is innervated by the tibial nerve, arises from the fibula and insets in the distal phalanx of pedal digit 1." [Wikipedia:Flexor_hallucis_longus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "flexor hallucis longus muscle" EXACT [Wikipedia:Flexor_hallucis_longus_muscle] xref: EMAPA:37588 {source="MA:th"} @@ -177708,6 +178522,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/92/Gr id: UBERON:0001393 name: auditory cortex def: "The part of the brain that is the ultimate target of afferent auditory information." [http://www.ncbi.nlm.nih.gov/books/NBK10900/] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "A1 (primary auditory cortex)" RELATED [Wikipedia:Primary_auditory_cortex] @@ -177749,6 +178565,8 @@ id: UBERON:0001394 name: axillary artery def: "Artery that supplies the axilla." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria axillaris" EXACT OMO:0003011 [Wikipedia:Axillary_artery] synonym: "axillary part of subclavian artery" EXACT [FMA:22654] @@ -177780,6 +178598,8 @@ id: UBERON:0001395 name: thoraco-acromial artery def: "The thoracoacromial artery (acromiothoracic artery; thoracic axis) is a short trunk, which arises from the forepart of the axillary artery, its origin being generally overlapped by the upper edge of the Pectoralis minor. [WP,unvetted]." [Wikipedia:Thoraco-acromial_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "acromiothoracic artery" EXACT [] synonym: "thoracoacromial artery" EXACT [] @@ -177802,6 +178622,8 @@ id: UBERON:0001396 name: lateral thoracic artery def: "A blood vessel that supplies oxygenated blood to the lateral structures of the thorax and breast. It originates from the axillary artery and follows the lower border of the Pectoralis minor muscle to the side of the chest, supplies the serratus ventralis muscle and the Pectoralis major muscle, and sends branches across the axilla to the axillary lymph nodes and Subscapularis muscle. It anastomoses with the internal thoracic artery, subscapular, and intercostal arteries, and with the pectoral branch of the thoracoacromial artery. In the female it supplies an external mammary branch which turns round the free edge of the Pectoralis major and supplies the breasts. [WP,unvetted]." [Wikipedia:Lateral_thoracic_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria thoracalis lateralis" RELATED OMO:0003011 [Wikipedia:Lateral_thoracic_artery] synonym: "external mammary artery" EXACT [] @@ -177824,6 +178646,8 @@ id: UBERON:0001397 name: subscapular artery def: "The subscapular artery, the largest branch of the axillary artery, arises at the lower border of the Subscapularis, which it follows to the inferior angle of the scapula, where it anastomoses with the lateral thoracic and intercostal arteries and with the descending branch of the transverse cervical, and ends in the neighboring muscles. About 4 cm. from its origin it gives off two branches, first the scapular circumflex artery and then the thoracodorsal artery. [WP,unvetted]." [Wikipedia:Subscapular_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria subscapularis" RELATED OMO:0003011 [Wikipedia:Subscapular_artery] xref: EMAPA:37116 {source="MA:th"} @@ -177845,6 +178669,8 @@ name: brachial artery def: "The brachial artery is the major blood vessel of the (upper) arm. It is the continuation of the axillary artery beyond the lower margin of teres major muscle. It continues down the ventral surface of the arm until it reaches the cubital fossa at the elbow. It then divides into the radial and ulnar arteries which run down the forearm. In some individuals, the bifurcation occurs much earlier and the ulnar and radial arteries extend through the upper arm. The pulse of the brachial artery is palpable on the anterior aspect of the elbow, medial to the tendon of the biceps, and, with the use of a stethoscope and sphygmomanometer (blood pressure cuff) often used to measure the blood pressure. The brachial artery is closely related to the median nerve; in proximal regions, the median nerve is immediately lateral to the brachial artery. Distally, the median nerve crosses the medial side of the brachial artery and lies anterior to the elbow joint. [WP,unvetted]." [Wikipedia:Brachial_artery] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria brachialis" RELATED OMO:0003011 [Wikipedia:Brachial_artery] synonym: "brachial part of trunk of subclavian artery" EXACT [] @@ -177871,6 +178697,8 @@ id: UBERON:0001399 name: deep brachial artery def: "The arteria profunda brachii (also known as deep artery of the arm and the deep brachial artery) is a large vessel which arises from the medial and back part of the brachial, just below the lower border of the Teres major. [WP,unvetted]." [Wikipedia:Deep_brachial_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria profunda brachii" EXACT OMO:0003011 [FMA:22695, FMA:TA] synonym: "profunda brachii artery" EXACT [] @@ -177891,6 +178719,8 @@ id: UBERON:0001400 name: iliocostalis thoracis muscle def: "The iliocostalis dorsi (musculus accessorius; iliocostalis thoracis) arises by flattened tendons from the upper borders of the angles of the lower six ribs medial to the tendons of insertion of the iliocostalis lumborum; these become muscular, and are inserted into the upper borders of the angles of the upper six ribs and into the back of the transverse process of the seventh cervical vertebra." [Wikipedia:Iliocostalis#Iliocostalis_thoracis] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "iliocostalis thoracis" RELATED [Wikipedia:Iliocostalis] synonym: "iliocostalis thoracis muscle" RELATED [Wikipedia:Iliocostalis] synonym: "musculus accessorius" RELATED [Wikipedia:Iliocostalis] @@ -177907,6 +178737,8 @@ id: UBERON:0001401 name: longissimus thoracis muscle def: "The longissimus thoracis is the intermediate and largest of the continuations of the sacrospinalis.[WP]. intermediate erector spinae muscle of back; origin, with iliocostalis and from transverse processes of lower thoracic vertebrae; insertion, by lateral slips into most or all of the ribs between angles and tubercles and into tips of transverse processes of upper lumbar vertebrae, and by medial slips into accessory processes of upper lumbar and transverse processes of thoracic vertebrae; action, extends vertebral column; nerve supply, dorsal primary rami of thoracic and lumbar spinal nerves[Stedmans]." [http://www.medilexicon.com/medicaldictionary.php?s=longissimus+thoracis+%28muscle%29, Wikipedia:Longissimus#Longissimus_thoracis] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "longissimus dorsi" EXACT [BTO:0001651] synonym: "longissimus dorsi muscle" EXACT [] @@ -177934,6 +178766,8 @@ name: longissimus cervicis muscle def: "A muscle with origin in transverse processes of upper thoracic vertebrae, and insertion in transverse processes of middle and upper cervical vertebrae that extends cervical vertebrae." [http://medical-dictionary.thefreedictionary.com/longissimus+cervicis+muscle, UBERON:cjm] comment: ; nerve supply, dorsal primary rami of lower cervical and upper thoracic spinal nerves subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "longissimus cervicis" EXACT [MA:0002337] synonym: "musculus longissimus cervicis" RELATED [BTO:0001650] @@ -177956,6 +178790,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1f/Lo id: UBERON:0001403 name: longissimus capitis def: "A longissimus muscle that lies medial to the longissimus cervicis, between it and the semispinalis capitis. It arises by tendons from the transverse processes of the upper four or five thoracic vertebrae, and the articular processes of the lower three or four cervical vertebrae, and is inserted into the posterior margin of the mastoid process, beneath the splenius capitis and sternocleidomastoid.[WP,unvetted]." [Wikipedia:Longissimus#Longissimus_capitis] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus longissimus capitis" RELATED [BTO:0001649] synonym: "trachelomastoid muscle" RELATED [Wikipedia:Longissimus#Longissimus_capitis] @@ -177976,6 +178812,8 @@ id: UBERON:0001404 name: radial artery def: "Branch of the brachial artery beginning below the elbow and extending down the forearm around the wrist and into the palm." [https://www.vocabulary.com/dictionary/arteria%20radialis] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria radialis" RELATED OMO:0003011 [Wikipedia:Radial_artery] xref: EMAPA:37112 {source="MA:th"} @@ -177999,6 +178837,8 @@ id: UBERON:0001405 name: spinalis thoracis muscle def: "Origin: spinous processes of two upper lumbar and two lower thoracic; insertion: spines of upper thoracic vertebrae; innervation: branches of spinal nerves; action: extends vertebral column." [BTO:0002624] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus spinalis dorsi" RELATED [BTO:0002624] synonym: "musculus spinalis thoracis" RELATED [BTO:0002624] @@ -178021,6 +178861,8 @@ id: UBERON:0001406 name: ulnar artery def: "The ulnar artery is the main blood vessel, with oxygenated blood, of the medial aspect of the forearm. It arises from the brachial artery and terminates in the superficial palmar arch, which joins with the superficial branch of the radial artery. It is palpable on the anterior and medial aspect of the wrist. Along its course, it is accompanied by a similarly named vein or veins, the ulnar vein or ulnar veins. The ulnar artery, the larger of the two terminal branches of the brachial, begins a little below the bend of the elbow in the cubital fossa, and, passing obliquely downward, reaches the ulnar side of the forearm at a point about midway between the elbow and the wrist. It then runs along the ulnar border to the wrist, crosses the transverse carpal ligament on the radial side of the pisiform bone, and immediately beyond this bone divides into two branches, which enter into the formation of the superficial and deep volar arches. [WP,unvetted]." [Wikipedia:Ulnar_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria ulnaris" EXACT OMO:0003011 [Wikipedia:Ulnar_artery] xref: EMAPA:37675 {source="MA:th"} @@ -178043,6 +178885,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a9/Gr id: UBERON:0001407 name: semispinalis thoracis def: "The Semispinalis dorsi (or semispinalis thoracis) consists of thin, narrow, fleshy fasciculi, interposed between tendons of considerable length. It arises by a series of small tendons from the transverse processes of the sixth to the tenth thoracic vertebræ, and is inserted, by tendons, into the spinous processes of the upper four thoracic and lower two cervical vertebrae. [WP,unvetted]." [Wikipedia:Semispinalis_dorsi] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus semispinalis dorsi" RELATED OMO:0003011 [Wikipedia:Semispinalis_dorsi] synonym: "musculus semispinalis thoracis" RELATED OMO:0003011 [Wikipedia:Semispinalis_dorsi] @@ -178064,6 +178908,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Se id: UBERON:0001408 name: semispinalis cervicis def: "The semispinalis cervicis (semispinalis colli), thicker than the semispinalis dorsi, arises by a series of tendinous and fleshy fibers from the transverse processes of the upper five or six thoracic vertebræ, and is inserted into the cervical spinous processes, from the axis to the fifth inclusive. The fasciculus connected with the axis is the largest, and is chiefly muscular in structure. [WP,unvetted]." [Wikipedia:Semispinalis_cervicis] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus semispinalis cervicis" RELATED OMO:0003011 [Wikipedia:Semispinalis_cervicis] xref: EMAPA:37695 {source="MA:th"} @@ -178082,6 +178928,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7f/Gr id: UBERON:0001409 name: semispinalis capitis def: "The Semispinalis capitis (Complexus) is situated at the upper and back part of the neck, deep to the Splenius, and medial to the Longissimus cervicis and capitis. It arises by a series of tendons from the tips of the transverse processes of the upper six or seven thoracic and the seventh cervical vertebræ, and from the articular processes of the three cervical above this. The tendons, uniting, form a broad muscle, which passes upward, and is inserted between the superior and inferior nuchal lines of the occipital bone. The medial part, usually more or less distinct from the remainder of the muscle, is frequently termed the Spinalis capitis; it is also named the Biventer cervicis since it is traversed by an imperfect tendinous inscription. [WP,unvetted]." [Wikipedia:Semispinalis_capitis] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "biventer cervicis" NARROW [Wikipedia:Semispinalis_capitis] synonym: "complexus" RELATED [Wikipedia:Semispinalis_capitis] @@ -178105,6 +178953,8 @@ id: UBERON:0001410 name: common palmar digital artery def: "Three common palmar digital arteries arise from the convexity of the superficial palmar arch and proceed distally on the second, third, and fourth lumbricales muscles." [Wikipedia:Common_palmar_digital_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "common palmar digital arteries" EXACT [] xref: EMAPA:37207 {source="MA:th"} @@ -178124,6 +178974,8 @@ id: UBERON:0001411 name: basilic vein def: "A superficial vein of the upper limb that drain parts of manus and forearm." [Wikipedia:Basilic_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "basilic vein of forearm" EXACT [] synonym: "vena basilica antebrachii" EXACT OMO:0003011 [FMA:22908, FMA:TA] @@ -178150,6 +179002,8 @@ id: UBERON:0001412 name: common palmar digital vein comment: Some sources distinguish between the "proper palmar digital veins", which are more distal, and the "common palmar digital veins", which are more proximal. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "proximal palmar digital vein" EXACT [Wikipedia:Palmar_digital_veins] xref: EMAPA:37222 {source="MA:th"} xref: FMA:22923 @@ -178162,6 +179016,8 @@ id: UBERON:0001413 name: brachial vein def: "A vein that accompanies the brachial artery between the shoulder and the elbow." [UBERON:cjm] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: AAO:0010512 xref: EMAPA:37445 {source="MA:th"} @@ -178186,6 +179042,8 @@ id: UBERON:0001414 name: median basilic vein def: "A vein between the biceps and pronator radii teres muscles that unites with the common ulnar vein to form the basilic vein within the forearm." [ncithesaurus:Median_Basilic_Vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "medial antecubital vein" RELATED [Wikipedia:Median_cubital_vein] synonym: "median cubital" RELATED [Wikipedia:Median_cubital_vein] @@ -178212,6 +179070,8 @@ property_value: editor_note "Merged median cubital and basilic veins on basis of id: UBERON:0001415 name: skin of pelvis def: "A zone of skin that is part of a pelvis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pelvic skin" EXACT [] synonym: "pelvis skin" EXACT [] synonym: "pelvis zone of skin" EXACT [OBOL:automatic] @@ -178230,6 +179090,8 @@ id: UBERON:0001416 name: skin of abdomen def: "A zone of skin that is part of an abdomen [Automatically generated definition]." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "abdomen skin" EXACT [] synonym: "abdomen zone of skin" EXACT [OBOL:automatic] @@ -178252,6 +179114,8 @@ relationship: part_of UBERON:0000916 ! abdomen id: UBERON:0001417 name: skin of neck def: "A zone of skin that is part of a neck [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "neck (volume) zone of skin" EXACT [OBOL:automatic] synonym: "neck skin" EXACT [] synonym: "neck zone of skin" EXACT [OBOL:automatic] @@ -178273,6 +179137,8 @@ relationship: part_of UBERON:0000974 ! neck id: UBERON:0001418 name: skin of thorax def: "A zone of skin that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "thoracic skin" EXACT [] synonym: "thorax skin" EXACT [] synonym: "thorax zone of skin" EXACT [OBOL:automatic] @@ -178292,6 +179158,8 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk id: UBERON:0001419 name: skin of limb def: "A zone of skin that is part of a limb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "limb skin" EXACT [] synonym: "limb zone of skin" EXACT [OBOL:automatic] @@ -178312,6 +179180,8 @@ id: UBERON:0001420 name: subscapular vein def: "A vein formed by the confluence of the thoracodorsal and circumflex scapular veins and accompanying the subscapular artery to drain into the axillary vein." [http://www.medilexicon.com/medicaldictionary.php?t=97509] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "vena subscapularis" EXACT OMO:0003011 [] xref: EMAPA:37190 {source="MA:th"} xref: FMA:23113 @@ -178326,6 +179196,8 @@ relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein id: UBERON:0001421 name: pectoral girdle region def: "An organism subdivision that includes the pectoral girdle skeleton and associated soft tissue. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). Examples: There are only two instances in an organism, right and left pectoral girdle regions." [FMA:23217, https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -178358,6 +179230,8 @@ property_value: external_definition "An organism subdivision that includes the p id: UBERON:0001422 name: facial lymphatic vessel def: "A lymphatic vessel that is part of a face [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "buccal lymphatic vessel" EXACT [] synonym: "face lymph vessel" EXACT [OBOL:automatic] @@ -178380,6 +179254,8 @@ name: radius bone def: "The major preaxial endochondral bone in the anterior zeugopod[Phenoscape]." [PHENOSCAPE:mah] comment: Due to the presence of the radius in Tetrpodomorph fish this element is not inherently linked to the presence of digits or flexor musculature. The corresponding bone in the posterior fin/limb is the tibia.[Phenoscape]. In four-legged animals, the radius is the main load-bearing bone of the lower forelimb. Its structure is similar in most terrestrial tetrapods, but it may be fused with the ulna in some mammals (such as horses) and reduced or modified in animals with flippers or vestigial forelimbs [ISBN:0-03-910284-X] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "radius" EXACT [MA:0001357] @@ -178414,6 +179290,8 @@ name: ulna def: "The major postaxial endochondral bone in the anterior zeugopod[Phenoscape]." [PHENOSCAPE:mah] comment: The corresponding bone in the posterior fin/limb is the fibula. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: AAO:0000789 @@ -178445,6 +179323,8 @@ property_value: has_relational_adjective "ulnar" xsd:string [Term] id: UBERON:0001425 name: pectoral lymphatic vessel +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "PL" RELATED OMO:0003000 [] xref: FMA:234865 @@ -178458,6 +179338,8 @@ relationship: part_of UBERON:0001421 ! pectoral girdle region [Term] id: UBERON:0001426 name: jugular lymphatic vessel +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "JL" RELATED OMO:0003000 [] synonym: "JLV" BROAD OMO:0003000 [ZFA:0005109] @@ -178472,6 +179354,8 @@ id: UBERON:0001427 name: radiale def: "Endochondral proximal carpal bone articulating with the radius." [https://github.com/obophenotype/uberon/issues/112, UBERON:mah] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "navicular bone of hand" EXACT [] @@ -178511,6 +179395,8 @@ id: UBERON:0001428 name: intermedium def: "Endochondral carpal bone articulating with the ulnare and the radiale." [https://github.com/obophenotype/uberon/issues/113, UBERON:mah] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "intermediate carpal bone" RELATED [] @@ -178549,6 +179435,8 @@ id: UBERON:0001429 name: pisiform def: "A laterally positioned sesamoid bone found in close proximity with and occasionally fused to the ulnare." [https://github.com/obophenotype/uberon/issues/116, PHENOSCAPE:ad] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "accessory carpal bone" RELATED [MA:0001339] synonym: "os pisiforme" RELATED OMO:0003011 [Wikipedia:Pisiform_bone] @@ -178574,6 +179462,8 @@ property_value: editor_note "check: accessory carpal" xsd:string id: UBERON:0001430 name: distal carpal bone 1 subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "carpal 1" RELATED [AAO:0010634] @@ -178611,6 +179501,8 @@ property_value: taxon_notes "located between radiale and first metacarpal[VSAO]. id: UBERON:0001431 name: distal carpal bone 2 subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "carpal 2" RELATED [AAO:0000848] @@ -178649,6 +179541,8 @@ property_value: taxon_notes "located in the distal part of the carpus and articu id: UBERON:0001432 name: distal carpal bone 3 subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "capitate" EXACT [MA:0001342] @@ -178693,6 +179587,8 @@ property_value: taxon_notes "medially located and articulates with metacarpals 2 id: UBERON:0001433 name: distal carpal bone 4 subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "carpal 4" RELATED [AAO:0000850] @@ -178731,6 +179627,8 @@ id: UBERON:0001434 name: skeletal system def: "Anatomical system that is a multi-element, multi-tissue anatomical cluster that consists of the skeleton and the articular system." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000027] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -178783,6 +179681,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/The-skeleta id: UBERON:0001435 name: carpal bone def: "A bone that is part of the carpal skeleton. Examples: scaphoid, lunate, capitate[cjm]." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "bone of carpus" EXACT [] @@ -178815,6 +179715,8 @@ property_value: taxon_notes "In tetrapods, the carpals is the sole cluster of th id: UBERON:0001436 name: phalanx of manus def: "A phalanx that is part of a forelimb autopod[Automatically generated definition]." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Phalanges_of_the_hand] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bone of finger" RELATED [FMA:23914] synonym: "digital bone of manus" NARROW [OBOL:automatic] @@ -178857,6 +179759,8 @@ property_value: external_definition "Dumb-bell shaped bones of endochondral orig id: UBERON:0001437 name: epiphysis def: "The head of a long bone that articulates with a neighboring skeletal element and is separated from the shaft by the epiphyseal plate until bone growth stops. At that time, the plate disappears and the head and shaft are united[MESH,modified]." [http://orcid.org/0000-0002-6601-2165, MESH:A02.835.232.251] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "bone epiphysis" EXACT [] @@ -178887,6 +179791,8 @@ property_value: has_relational_adjective "epiphysial" xsd:string id: UBERON:0001438 name: metaphysis def: "Zone of long bone that is between the epiphysis and diaphysis. Subdivision of diaphysis which forms the proximal or distal end of diaphysis next to the epiphysis; together with diaphysis proper, it constitutes the diaphysis. Examples: proximal metaphysis of humerus, distal metaphysis of femur.[FMA]." [FMA:24014, Wikipedia:Metaphysis] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "diaphyseal end of long bone" EXACT [] @@ -178911,6 +179817,8 @@ id: UBERON:0001439 name: compact bone tissue def: "The outer layers of solid, hard bone that covers spongy bone; consists of parallel osteons containing mineral deposits and interstitial lamellae." [ISBN:0-683-40008-8, MGI:hdene, MP:0003797] comment: MP distinguishes compact/cortical bone. in other AOs they are syns +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "bony cortex" EXACT [HP:0002753] @@ -178941,6 +179849,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/p id: UBERON:0001440 name: forelimb skeleton def: "The collection of all skeletal elements in a free forelimb region. Excludes the pectoral girdle." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "bones of upper limb" EXACT [] synonym: "fore limb skeleton" EXACT [] synonym: "forelimb skeleton" EXACT [VHOG:0001256] @@ -178980,6 +179890,8 @@ id: UBERON:0001441 name: hindlimb skeleton def: "Subdivision of skeleton consisting of all skeletal elements in an hindlimb region." [https://orcid.org/0000-0002-6601-2165] comment: TOOD - find a home for: FMA:24140 +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "bones of lower limb" EXACT [] synonym: "free lower limb skeleton" EXACT [FMA:24144] @@ -179015,6 +179927,8 @@ id: UBERON:0001442 name: skeleton of manus def: "Subdivision of skeleton that is the collection of all skeletal elements in a manus, which is the distal section of the anterior forelimb skeleton consisting of the mesopodium, the metapodium and the acropodium (e.g. including the wrist, palm, and fingers)[Phenoscape]." [https://github.com/obophenotype/uberon/issues/74, https://orcid.org/0000-0002-6601-2165, PHENOSCAPE:MAH] comment: here 'manus' includes both the wrist region, metatarsal region and acropodial region +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior autopodium" RELATED [VSAO:0005020, VSAO:NI] synonym: "anterior autopodium skeleton" EXACT [] @@ -179049,6 +179963,8 @@ id: UBERON:0001443 name: chest def: "Subdivision of trunk proper, which is demarcated from the neck by the plane of the superior thoracic aperture and from the abdomen internally by the inferior surface of the diaphragm and externally by the costal margin and associated with the thoracic vertebral column and ribcage and from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the abdomen and the perineum, it constitutes the trunk proper[FMA]." [FMA:9576, Wikipedia:Chest] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "anterolateral part of thorax" EXACT [] @@ -179086,6 +180002,8 @@ property_value: has_relational_adjective "thoracic" xsd:string [Term] id: UBERON:0001444 name: subdivision of head +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "head region" RELATED [] synonym: "head subdivision" EXACT [] @@ -179101,6 +180019,8 @@ id: UBERON:0001445 name: skeleton of pes def: "Subdivision of skeleton that is the collection of all skeletal elements in a pes, which is the distal section of the posterior hindlimb skeleton consisting of the mesopodium, the metapodium and the acropodium (e.g. including the ankle, sole, and toes)[Phenoscape]." [https://github.com/obophenotype/uberon/issues/75, https://orcid.org/0000-0002-6601-2165, PHENOSCAPE:MAH] comment: here 'pes' includes both the ankle region, metatarsals and acropodial region +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "foot region skeleton" EXACT [EHDAA2:0002228] synonym: "foot skeleton" EXACT [FMA:24222] @@ -179130,6 +180050,8 @@ name: fibula def: "The major postaxial endochondral bone in the posterior zeugopod[Phenoscape]." [PHENOSCAPE:mah] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: AAO:0000891 @@ -179165,6 +180087,8 @@ property_value: has_relational_adjective "fibular" xsd:string id: UBERON:0001447 name: tarsal bone def: "A bone that is part of the tarsal skeleton. Examples: calcaneus, talus, centralia." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ankle bone" EXACT [FMA:24491] @@ -179203,6 +180127,8 @@ property_value: taxon_notes "In primitive tetrapods, such as Trematops, the tars id: UBERON:0001448 name: metatarsal bone def: "The metatarsus or metatarsal bones are a group of five long bones in the pes located between the tarsal bones of the hind- and mid-pes and the phalanges of the toes. Lacking individual names, the metatarsal bones are numbered from the medial side (side of big toe): the first, second, third, fourth, and fifth metatarsal. The metatarsals are analogous to the metacarpal bones of the manus. [WP,unvetted]." [Wikipedia:Metatarsal_bone] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "metatarsal" EXACT [] @@ -179237,6 +180163,8 @@ id: UBERON:0001449 name: phalanx of pes alt_id: UBERON:0004272 def: "A phalanx that is part of a hindlimb autopod[Automatically generated definition]." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Phalanges_of_the_foot] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bone of toe" RELATED [FMA:24493] synonym: "digital bone of pes" BROAD [OBOL:automatic] @@ -179279,6 +180207,8 @@ id: UBERON:0001450 name: calcaneus def: "The postaxial bone of the proximal tarsals series[Phenoscape]." [https://github.com/obophenotype/uberon/issues/72, PHENOSCAPE:mah] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "calcaneal bone" EXACT [BTO:0002355] @@ -179320,6 +180250,8 @@ id: UBERON:0001451 name: navicular bone of pes def: "The oval-shaped tarsal bone found between the talus and the 3 cuneiform bones." [MGI:llw2, MP:0009727] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "central tarsal bone" RELATED [] @@ -179357,6 +180289,8 @@ id: UBERON:0001452 name: distal tarsal bone 1 def: "Endochondral tarsal bone articulating with centralia and metatarsal 1." [VSAO:0005052, Wikipedia:Medial_cuneiform_bone] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "1st cuneiform" RELATED [EMAPA:36176] synonym: "cuneiforme 1" EXACT [VSAO:0005052] @@ -179407,6 +180341,8 @@ name: distal tarsal bone 2 def: "Endochondral tarsal bone articulating with centralia and metatarsal 2." [VSAO:0005053, Wikipedia:Intermediate_cuneiform_bone] comment: The intermediate cuneiform (also known as second cuneiform / middle cuneiform) is shaped like a wedge, the thin end pointing downwards. It is situated between the other two cuneiforms (the medial and lateral cuneiforms), and articulates with the navicular posteriorly, the second metatarsal anteriorly and with the other cuneiforms on either side. [WP,unvetted] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "2nd cuneiform" RELATED [EMAPA:36177] synonym: "cuneiforme 2" EXACT [VSAO:0005053] @@ -179455,6 +180391,8 @@ name: distal tarsal bone 3 def: "Endochondral tarsal bone articulating with centralia and metatarsal 3." [VSAO:0005054, Wikipedia:Lateral_cuneiform_bone] comment: The lateral cuneiform (also known as third cuneiform / external cuneiform) intermediate in size between the other two cuneiform bones, is also wedge-shaped, the base being uppermost. It occupies the center of the front row of the tarsal bones, between the second cuneiform medially, the cuboid laterally, the navicular posteriorly and the third metatarsal in front. [WP,unvetted] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "3rd cuneiform" RELATED [EMAPA:36178] synonym: "cuneiforme 3" EXACT [VSAO:0005054] @@ -179503,6 +180441,8 @@ id: UBERON:0001455 name: cuboid bone def: "A tarsal bone that is formed from distal tarsals 4 and 5. [WP,modified]." [Wikipedia:Cuboid_bone] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "cuboid" EXACT [] synonym: "cuboideum" RELATED [] @@ -179521,10 +180461,10 @@ xref: UMLS:C0376381 {source="ncithesaurus:Cuboid_Bone"} xref: Wikipedia:Cuboid_bone is_a: UBERON:0010721 ! distal tarsal bone intersection_of: UBERON:0010721 ! distal tarsal bone -intersection_of: derived_from_ancestral_fusion_of UBERON:0010737 ! distal tarsal bone 4 -intersection_of: derived_from_ancestral_fusion_of UBERON:0010738 ! distal tarsal bone 5 -relationship: derived_from_ancestral_fusion_of UBERON:0010737 ! distal tarsal bone 4 -relationship: derived_from_ancestral_fusion_of UBERON:0010738 ! distal tarsal bone 5 +intersection_of: has_fused_element UBERON:0010737 ! distal tarsal bone 4 +intersection_of: has_fused_element UBERON:0010738 ! distal tarsal bone 5 +relationship: has_fused_element UBERON:0010737 ! distal tarsal bone 4 +relationship: has_fused_element UBERON:0010738 ! distal tarsal bone 5 relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/18/Gray274.png" xsd:anyURI property_value: terminology_notes "NominaAnatomicaVeterinaria uses os cuboideum as an official synonym for distal tarsal IV, but some sources also use this as the label for the human cuboid bone which is regarded to be formed from tarsals IV and V. We therefore decline to use exact syns in either case." xsd:string @@ -179533,6 +180473,8 @@ property_value: terminology_notes "NominaAnatomicaVeterinaria uses os cuboideum id: UBERON:0001456 name: face def: "A subdivision of the head that has as parts the layers deep to the surface of the anterior surface, including the mouth, eyes, and nose (when present). In vertebrates, this includes the facial skeleton and structures superficial to the facial skeleton (cheeks, mouth, eyeballs, skin of face, etc)." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "facia/facies" RELATED OMO:0003011 [Wikipedia:Face] @@ -179565,6 +180507,8 @@ property_value: has_relational_adjective "facial" xsd:string id: UBERON:0001457 name: skin of eyelid def: "A zone of skin that is part of a eyelid [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "blepharon zone of skin" EXACT [OBOL:automatic] synonym: "eyelid skin" EXACT [] @@ -179586,6 +180530,8 @@ relationship: part_of UBERON:0001711 ! eyelid id: UBERON:0001458 name: skin of lip def: "A zone of skin that is part of a lip [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lip skin" EXACT [] synonym: "lip zone of skin" EXACT [OBOL:automatic] synonym: "skin of lips" RELATED OMO:0003004 [] @@ -179605,6 +180551,8 @@ relationship: part_of UBERON:0001833 ! lip id: UBERON:0001459 name: skin of external ear def: "A zone of skin that is part of a external ear [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "auricular region of head zone of skin" EXACT [OBOL:automatic] synonym: "auricular region zone of skin" EXACT [OBOL:automatic] @@ -179633,6 +180581,8 @@ id: UBERON:0001460 name: arm def: "The part of the forelimb extending from the shoulder to the autopod[cjm]." [Wikipedia:Arm] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "brachium" RELATED OMO:0003011 [Wikipedia:Arm] @@ -179665,6 +180615,8 @@ id: UBERON:0001461 name: elbow def: "The elbow is the region surrounding the elbow-joint-the ginglymus or hinge joint in the middle of the arm. Three bones form the elbow joint: the humerus of the upper arm, and the paired radius and ulna of the forearm. The bony prominence at the very tip of the elbow is the olecranon process of the ulna, and the inner aspect of the elbow is called the antecubital fossa. [WP,unvetted,human-specific]." [Wikipedia:Elbow] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "articulatio cubiti" RELATED OMO:0003011 [Wikipedia:Elbow] @@ -179696,6 +180648,8 @@ property_value: terminology_notes "Naming conventions for pod terms under discus id: UBERON:0001463 name: manual digit 1 def: "1st (preaxial) digit of the manus[Wikipedia]." [PMCID:PMC2553264, Wikipedia:Thumb] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "alula" NARROW SENSU [Wikipedia:Alula] @@ -179748,6 +180702,8 @@ id: UBERON:0001464 name: hip def: "The hip region is located lateral to the gluteal region (i.e. the buttock), inferior to the iliac crest, and overlying the greater trochanter of the thigh bone. In adults, three of the bones of the pelvis have fused into the hip bone which forms part of the hip region. The hip joint, scientifically referred to as the acetabulofemoral joint (art. coxae), is the joint between the femur and acetabulum of the pelvis and its primary function is to support the weight of the body in both static (e.g. standing) and dynamic (e.g. walking or running) postures. [WP,modified]." [Wikipedia:Hip] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "coxa" RELATED OMO:0003011 [Wikipedia:Hip] @@ -179784,6 +180740,8 @@ name: knee def: "A segment of the hindlimb that corresponds to the joint connecting a hindlimb stylopod and zeugopod." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "knee region" EXACT [] @@ -179810,6 +180768,8 @@ id: UBERON:0001466 name: pedal digit alt_id: UBERON:0000027 def: "A digit that is part of a pes (foot)." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "digit of foot" EXACT [] @@ -179850,6 +180810,8 @@ id: UBERON:0001467 name: shoulder def: "A subdivision of the pectoral complex consisting of the structures in the region of the shoulder joint (which connects the humerus, scapula and clavicle)." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "articulatio humeri" RELATED OMO:0003011 [Wikipedia:Shoulder] @@ -179883,6 +180845,8 @@ property_value: homology_notes "(...) endochondral elements of the early tetrapo id: UBERON:0001468 name: intervertebral joint def: "The joint between adjacent vertebral bodies. May be composed of the nucleus pulposus, annular ligament, and the anterior and posterior longitudinal ligaments." [http://www.medilexicon.com/medicaldictionary.php?t=87401] +subset: human_subset +subset: mouse_subset synonym: "inter-centrum joint" EXACT [] synonym: "inter-vertebral joint" EXACT [] synonym: "intervertebral symphysis" EXACT [FMA:25511] @@ -179905,6 +180869,8 @@ property_value: external_ontology_notes "FMA has 'intervertebral joint' as a GAT id: UBERON:0001469 name: sternoclavicular joint def: "The sternoclavicular articulation is a double arthrodial joint composed of two portions separated by an articular disc. The parts entering into its formation are the sternal end of the clavicle, the upper and lateral part of the manubrium sterni, and the cartilage of the first rib, visible from the outside as the suprasternal notch. The articular surface of the clavicle is much larger than that of the sternum, and is invested with a layer of cartilage, which is considerably thicker than that on the latter bone. The ligaments of this joint are: Articular capsule Anterior sternoclavicular ligament Posterior sternoclavicular ligament Interclavicular ligament Costoclavicular ligament Articular disk [WP,unvetted]." [Wikipedia:Sternoclavicular_articulation] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "articulatio sternoclavicularis" RELATED OMO:0003011 [Wikipedia:Sternoclavicular_articulation] synonym: "sterno clavicular joint" EXACT [] @@ -179932,6 +180898,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3f/Gr id: UBERON:0001470 name: glenohumeral joint def: "The glenohumeral joint, commonly known as the shoulder joint, is a multiaxial synovial ball and socket joint and involves articulation between the glenoid fossa of the scapula (shoulder blade) and the head of the humerus (upper arm bone). [WP,unvetted]." [Wikipedia:Glenohumeral_joint] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "articulatio humeri" EXACT OMO:0003011 [FMA:25912, FMA:TA] synonym: "humeral joint" EXACT [FMA:25912] @@ -179968,6 +180936,8 @@ property_value: external_ontology_notes "in FMA, this is part of the bony pector id: UBERON:0001471 name: skin of prepuce of penis def: "The loose fold of skin that covers the penis." [MP:0003553, NCBI:matt] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "foreskin of penis" EXACT [] synonym: "penis foreskin" EXACT [] @@ -179986,6 +180956,8 @@ relationship: part_of UBERON:0001332 ! prepuce of penis id: UBERON:0001472 name: vaginal venous plexus def: "The vaginal plexuses are placed at the sides of the vagina; they communicate with the uterine, vesical, and hemorrhoidal plexuses, and are drained by the vaginal veins, one on either side, into the hypogastric veins. [WP,unvetted]." [Wikipedia:Vaginal_venous_plexus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "plexus venosus vaginalis" RELATED OMO:0003011 [Wikipedia:Vaginal_venous_plexus] synonym: "venous vaginal plexus" EXACT [] @@ -180007,6 +180979,8 @@ name: lymphatic vessel def: "A vessel that contains or conveys lymph, that originates as an interfibrillar or intercellular cleft or space in a tissue or organ, and that if small has no distinct walls or walls composed only of endothelial cells and if large resembles a vein in structure[BTO]." [BTO:0000752, Wikipedia:Lymphatic_vessel] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -180047,7 +181021,9 @@ id: UBERON:0001474 name: bone element def: "Skeletal element that is composed of bone tissue." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/277, PSPUB:0000170, VSAO:0000057] subset: efo_slim +subset: human_subset subset: major_organ +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -180114,6 +181090,8 @@ def: "A muscle of shoulder which attaches to the scapula, clavicle and humerus.[ comment: We use a generic definition that includes the deltoideus as represented in AAO: 'Muscle which originates as three heads, the pars externalis, pars clavicularis, and pars scapularis. The pars externalis originates from the lateral border of the omosternum and inserts on the distal portion of the humerus. The pars clavicularis originates from the ventro-lateral surface of the clavicle and inserts on the deltoid crest of the humerus. The pars scapularis originates from the lateral surface of the clavicle and inserts on the deltoid crest of the humerus'. Kardong: Dorsal group subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "common shoulder muscle" RELATED [Wikipedia:Deltoid_muscle] @@ -180163,6 +181141,8 @@ id: UBERON:0001477 name: infraspinatus muscle def: "The infraspinatus muscle is a thick triangular muscle, which occupies the chief part of the infraspinatous fossa. The infraspinatus is a muscle of the rotator cuff. [WP,unvetted]." [Wikipedia:Infraspinatus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "infrascapularis" RELATED [EMAPA:18526] @@ -180193,6 +181173,8 @@ id: UBERON:0001478 name: teres major muscle def: "Teres major is a muscle of the upper limb and one of six scapulohumeral muscles. It is a thick but somewhat flattened muscle. [WP,unvetted]." [Wikipedia:Teres_major_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "musculus teres major" RELATED OMO:0003011 [Wikipedia:Teres_major_muscle] @@ -180220,6 +181202,8 @@ id: UBERON:0001479 name: sesamoid bone def: "A sesamoid element that is composed of bone tissue." [http://orcid.org/0000-0002-6601-2165] comment: Sesamoids are often endochondral replacement elements and in addition to bone tissue, may also be composed of articular cartilage, fibrocartilage, hyaline cartilage, and calcified cartilage.[VSAO] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "ossa sesamoidea" EXACT OMO:0003011 [Wikipedia:Sesamoid_bone] synonym: "sesamoid" BROAD [] @@ -180246,6 +181230,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gr id: UBERON:0001480 name: proximal carpal bone def: "A carpal bone that proximally_connected_to a forelimb zeugopod skeleton." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:36164 xref: FMA:33302 xref: MA:0002557 @@ -180263,6 +181249,8 @@ relationship: part_of UBERON:0009880 ! carpal skeleton id: UBERON:0001481 name: distal carpal bone def: "A distal carpal endochondral element that is composed primarily of a bone tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal carpal" EXACT [AAO:0000847] xref: AAO:0000847 xref: EMAPA:36168 @@ -180287,6 +181275,8 @@ id: UBERON:0001482 name: muscle of shoulder def: "Any muscle organ that is part of a shoulder [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "muscle organ of shoulder" EXACT [OBOL:automatic] synonym: "shoulder muscle" EXACT [] synonym: "shoulder muscle organ" EXACT [OBOL:automatic] @@ -180305,6 +181295,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0001483 name: skin of shoulder def: "A zone of skin that is part of a shoulder region." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +subset: human_subset +subset: mouse_subset synonym: "shoulder skin" EXACT [] synonym: "shoulder zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of shoulder" EXACT [OBOL:automatic] @@ -180322,6 +181314,8 @@ property_value: external_ontology_notes "in MA this is a subclass of forelimb sk id: UBERON:0001484 name: articular capsule def: "An articular capsule (or joint capsule) is an envelope surrounding a synovial joint. [WP,unvetted]." [Wikipedia:Articular_capsule] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: uberon_slim synonym: "capsula articularis" EXACT OMO:0003011 [FMA:34836, FMA:TA] @@ -180356,6 +181350,8 @@ name: knee joint def: "The knee joint joins the thigh with the leg and consists of two articulations: one between the femur and tibia, and one between the femur and patella. It is the largest and most complicated joint in the human body. The knee is a mobile trocho-ginglymus (i.e. a pivotal hinge joint), which permits flexion and extension as well as a slight medial and lateral rotation[WP,unvetted]." [Wikipedia:Knee] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "articulatio genus" RELATED OMO:0003011 [Wikipedia:Knee] @@ -180390,6 +181386,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/ca/Kn id: UBERON:0001486 name: hip joint def: "A synovial joint that connects the femur to the acetbulum of the innominate bone." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "articulatio coxofemoralis" EXACT [FMA:35178] @@ -180420,6 +181418,8 @@ relationship: part_of UBERON:0001464 {source="FMA"} ! hip id: UBERON:0001487 name: pes joint def: "A skeletal joint that is part of a pes [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "articulationes pedis" EXACT OMO:0003011 [FMA:71349, FMA:TA] synonym: "foot joint" EXACT [] @@ -180449,6 +181449,8 @@ id: UBERON:0001488 name: ankle joint def: "A joint that connects the hindlimb autopod and zeugopod skeletons." [https://orcid.org/0000-0002-6601-2165, MESH:A02.835.583.378.062, Wikipedia:Ankle] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "gambrel" NARROW [Wikipedia:Hock_(anatomy)] synonym: "hock" NARROW [Wikipedia:Hock_(anatomy)] @@ -180486,6 +181488,8 @@ property_value: taxon_notes "todo - accurately represent different types of ankl id: UBERON:0001489 name: manus joint def: "A skeletal joint that is part of a manus (hand) [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "articulationes manus" EXACT OMO:0003011 [FMA:71345, FMA:TA] synonym: "hand joint" EXACT [] @@ -180510,6 +181514,8 @@ property_value: editor_note "TODO check FMA - use the set class for now" xsd:str id: UBERON:0001490 name: elbow joint def: "A joint that connects the forelimb zeugopod and stylopod skeletons[Obol]." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Elbow] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "articulatio cubiti" EXACT OMO:0003011 [] @@ -180543,6 +181549,8 @@ property_value: taxon_notes "In human anatomy, the elbow joint is a compound joi id: UBERON:0001491 name: wrist joint def: "A joint connecting the forelimb zeugopod skeleton with the carpal skeleton." [https://orcid.org/0000-0002-6601-2165, https://sourceforge.net/tracker/?group_id=76834&atid=1205376, Wikipedia:Wrist] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "carpal region joint" EXACT [OBOL:automatic] synonym: "joint of carpal region" EXACT [OBOL:automatic] @@ -180572,6 +181580,8 @@ id: UBERON:0001492 name: radial nerve def: "A nerve that supplies the upper limb, including the triceps brachii muscle of the arm, as well as all 12 muscles in the posterior osteofascial compartment of the forearm, as well as the associated joints and overlying skin." [Wikipedia:Radial_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nervus radialis" RELATED OMO:0003011 [Wikipedia:Radial_nerve] xref: EHDAA2:0001584 @@ -180601,6 +181611,8 @@ id: UBERON:0001493 name: axillary nerve def: "The axillary nerve is a nerve of the human body, that comes off the posterior cord of the brachial plexus at the level of the axilla (armpit) and carries nerve fibers from C5 and C6. The axillary nerve travels through the quadrangular space with the posterior circumflex humeral artery and vein. [WP,unvetted]." [Wikipedia:Axillary_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "auxillery nerve" RELATED [Wikipedia:Axillary_nerve] synonym: "circumflex humeral nerve" EXACT [] @@ -180627,6 +181639,8 @@ name: ulnar nerve alt_id: UBERON:0005668 def: "A nerve which runs near the ulna bone." [Wikipedia:Ulnar_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nervus ulnaris" RELATED OMO:0003011 [Wikipedia:Ulnar_nerve] xref: EHDAA2:0002099 @@ -180657,6 +181671,8 @@ def: "Muscles of the upper chest. The term may refer to one of two muscles, the comment: This currently groups the major and minor muscles (which have different attachment sites) as well as the AAO structure: Muscle which is comprised of three heads. The anterior head is the portio epicoracoidea that originates on the epicoracoid cartilage and inserts on the deltoid crest of the humerus. The next more posterior head, portio sternalis, originates on the sternum and inserts in the groove next to the deltoid crest of the humerus. The most posterior head, portio abdominalis, arises from the M. rectus abdominis and inserts on the deltoid crest of the humerus subset: grouping_class subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "breast muscle" RELATED [BTO:0000023] @@ -180691,6 +181707,8 @@ id: UBERON:0001496 name: ascending aorta def: "The ascending aorta is the portion of the aorta in a two-pass circulatory system that lies between the heart and the arch of aorta[GO]. A portion of the aorta commencing at the upper part of the base of the left ventricle, on a level with the lower border of the third costal cartilage behind the left half of the sternum; it passes obliquely upward, forward, and to the right, in the direction of the heart's axis, as high as the upper border of the second right costal cartilage, describing a slight curve in its course, and being situated, about 6 cm behind the posterior surface of the sternum. The total length is about 5 cm in length [Wikipedia]." [GO:0035905, Wikipedia:Ascending_aorta] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "aorta ascendens" RELATED OMO:0003011 [Wikipedia:Ascending_aorta] @@ -180722,6 +181740,8 @@ id: UBERON:0001497 name: muscle of pelvic girdle alt_id: UBERON:0003271 def: "Any muscle organ that is part of a pelvic girdle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "girdle-pelvic muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of girdle-pelvic" EXACT [OBOL:automatic] @@ -180747,6 +181767,8 @@ property_value: external_ontology_notes "Note that in MA, this is a subclass of id: UBERON:0001498 name: muscle of pes def: "Any muscle organ that is part of a pes [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot muscle" EXACT [] synonym: "foot muscle organ" EXACT [OBOL:automatic] synonym: "muscle of foot" EXACT [FMA:37369] @@ -180768,6 +181790,8 @@ name: muscle of arm alt_id: UBERON:0003272 def: "A muscle organ that is part of an arm [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "arm muscle" EXACT [MA:0000594] synonym: "arm muscle system" RELATED [EHDAA2:0000141] @@ -180792,6 +181816,8 @@ id: UBERON:0001500 name: muscle of manus def: "Any muscle organ that is part of a manus [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "hand muscle" EXACT [MA:0000628] synonym: "manus muscle" EXACT [] synonym: "manus muscle organ" EXACT [OBOL:automatic] @@ -180812,6 +181838,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0001501 name: lumbrical muscle of manus def: "The lumbricals are intrinsic muscles of the manus that flex the metacarpophalangeal joints and extend the interphalangeal joints." [Wikipedia:Lumbricals_of_the_hand] +subset: human_subset +subset: mouse_subset synonym: "hand lumbrical" EXACT [] synonym: "hand lumbrical muscle" EXACT [MA:0002316] synonym: "lumbrical muscle of hand" RELATED [FMA:37385] @@ -180829,6 +181857,8 @@ relationship: has_muscle_origin UBERON:0001523 ! flexor digitorum profundus id: UBERON:0001502 name: interosseous muscle of manus def: "Any of the interosseous muscles of the manus (hand). This includes the dorsal and plantar interossei." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hand interosseous muscle" EXACT [MA:0002313] synonym: "interosseous muscle of hand" EXACT [FMA:37417] @@ -180853,6 +181883,8 @@ id: UBERON:0001503 name: dorsal interosseous of manus def: "The dorsal interossei of the hand are muscles that occupy the space between the metacarpals. There are four dorsal interossei in each hand. They are specified as 'dorsal' to contrast them with the palmar interossei, which are located on the anterior side of the metacarpals. The dorsal interosseous muscles are bipennate, with each muscle arising by two heads from the adjacent sides of the metacarpal bones, but more extensively from the metacarpal bone of the finger into which the muscle is inserted. They are inserted into the bases of the proximal phalanges and into the extensor expansion of the corresponding extensor digitorum tendon. The middle digit has two dorsal interossei insert onto it while the first digit (thumb) and the fifth digit (little finger) have none[WP]." [Wikipedia:Dorsal_interossei_muscles_(hand)] comment: Action: abducts medial digits +subset: human_subset +subset: mouse_subset synonym: "dorsal hand interosseus muscle" EXACT [MA:0002314] synonym: "dorsal interosseous muscle of hand" RELATED [FMA:37418] synonym: "dorsal interosseous of hand" EXACT [FMA:37418] @@ -180873,6 +181905,8 @@ relationship: has_muscle_origin UBERON:0010544 {source="dbpedia"} ! metacarpus s id: UBERON:0001504 name: lumbrical muscle of pes def: "The lumbricals are four small skeletal muscles, accessory to the tendons of the flexor digitorum longus and numbered from the medial side of the pes; they arise from these tendons, as far back as their angles of division, each springing from two tendons, except the first." [Wikipedia:Lumbricals_of_the_foot] +subset: human_subset +subset: mouse_subset synonym: "foot lumbrical" EXACT [FMA:37453] synonym: "foot lumbrical muscle" EXACT [MA:0002305] synonym: "lumbrical muscle of foot" RELATED [FMA:37453] @@ -180891,6 +181925,8 @@ id: UBERON:0001505 name: coracobrachialis muscle def: "The Coracobrachialis is the smallest of the three muscles that attach to the coracoid process of the scapula. (The other two muscles are pectoralis minor and biceps brachii. ) It is situated at the upper and medial part of the arm. It is perforated by and innervated by the musculocutaneous nerve. [WP,unvetted]." [Wikipedia:Coracobrachialis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "coracobrachial" EXACT [MA:0002282] synonym: "coracobrachialis" EXACT [] @@ -180917,6 +181953,8 @@ id: UBERON:0001506 name: brachialis muscle def: "The brachialis (brachialis anticus) is a muscle in the upper arm that flexes the elbow joint. It lies just deep of the biceps brachii, and is a synergist that assists the biceps brachii in flexing at the elbow. It makes up part of the floor of the region known as the cubital fossa. [WP,unvetted]." [Wikipedia:Brachialis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "brachialis" RELATED [Wikipedia:Brachialis_muscle] synonym: "brachialis anticus muscle" RELATED [Wikipedia:Brachialis_muscle] @@ -180945,6 +181983,8 @@ property_value: external_definition "A muscle of the stylopodium, covering the d id: UBERON:0001507 name: biceps brachii def: "A muscle in the forelimb stylopod which in humans has several functions, the most important being to rotate the forearm and to flex the elbow. [WP,unvetted]." [Wikipedia:Biceps_brachii_muscle] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "biceps" BROAD [EHDAA2:0000167] @@ -180978,6 +182018,8 @@ id: UBERON:0001508 name: arch of aorta def: "The convex portion of the aorta between the ascending and descending parts of the aorta; branches from it include the brachiocephalic trunk, the left common carotid artery, and the left subclavian artery; the brachiocephalic trunk further splits to form the right subclavian artery and the right common carotid artery." [ISBN:0-683-40008-8, MP:0004113] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "aortic arch" RELATED [FMA:3768] @@ -181015,6 +182057,8 @@ name: triceps brachii def: "The triceps brachii muscle (Latin for 'three-headed' muscle of the arm, it is called a three headed muscle because there are three bundles of muscle, each of different origin, joining together at the elbow) is the large muscle on the back of the human upper limb. It is the muscle principally responsible for extension of the elbow joint (i.e. straightening of the arm). Though a similarly-named muscle, the triceps surae, is found on the lower leg, the triceps brachii is commonly called simply the 'triceps'. [WP,unvetted]." [Wikipedia:Triceps_brachii_muscle] comment: Dorsal group derivative that acts on the forearm[Kardong] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "musculus triceps brachii" RELATED OMO:0003011 [Wikipedia:Triceps_brachii_muscle] @@ -181049,6 +182093,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/8/83/T id: UBERON:0001510 name: skin of knee def: "A zone of skin that is part of a knee [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "knee skin" EXACT [] synonym: "knee zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of knee" EXACT [OBOL:automatic] @@ -181067,6 +182113,8 @@ relationship: part_of UBERON:0001465 ! knee id: UBERON:0001511 name: skin of leg def: "A zone of skin that is part of a leg [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "leg skin" EXACT [] synonym: "leg zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of leg" EXACT [OBOL:automatic] @@ -181084,6 +182132,8 @@ relationship: part_of UBERON:0000978 ! leg id: UBERON:0001512 name: skin of ankle def: "A zone of skin that is part of an ankle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ankle skin" EXACT [] synonym: "ankle zone of skin" EXACT [OBOL:automatic] synonym: "tarsal region skin" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -181103,6 +182153,8 @@ relationship: part_of UBERON:0004454 ! tarsal region id: UBERON:0001513 name: skin of pes def: "A zone of skin that is part of a pes [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "foot skin" EXACT [] synonym: "skin of foot" EXACT [FMA:37834] @@ -181124,6 +182176,8 @@ id: UBERON:0001514 name: descending aorta def: "The descending aorta is the portion of the aorta in a two-pass circulatory system from the arch of aorta to the point where it divides into the common iliac arteries[GO]. The descending aorta is part of the aorta, the largest artery in the body. The descending aorta is the part of the aorta beginning at the aortic arch that runs down through the chest and abdomen. The descending aorta is divided into two portions, the thoracic and abdominal, in correspondence with the two great cavities of the trunk in which it is situated. Within the abdomen, the descending aorta branches into the two common iliac arteries which serve the legs. [WP,unvetted]." [GO:0035906, Wikipedia:Descending_aorta] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "aorta descendens" RELATED OMO:0003011 [Wikipedia:Descending_aorta] @@ -181154,6 +182208,8 @@ id: UBERON:0001515 name: thoracic aorta def: "The part of the aorta that extends from the origin at the heart to the diaphragm, and from which arises numerous branches that supply oxygenated blood to the chest cage and the organs within the chest." [http://www.medterms.com, MP:0010468] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "aorta thoracalis" RELATED OMO:0003011 [Wikipedia:Thoracic_aorta] @@ -181185,6 +182241,8 @@ name: abdominal aorta def: "Abdominal part of aorta: the distal part of the descending aorta, which is the continuation of the thoracic part and gives rise to the inferior phrenic, lumbar, median sacral, superior and inferior mesenteric, middle suprarenal, renal, and testicular or ovarian arteries, and celiac trunk[BTO]. The abdominal aorta is the largest artery in the abdominal cavity. As part of the aorta, it is a direct continuation of descending aorta(of the thorax). [WP,unvetted]." [BTO:0002976, Wikipedia:Abdominal_aorta] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "abdominal part of aorta" EXACT [FMA:3789] @@ -181219,6 +182277,8 @@ id: UBERON:0001517 name: skin of elbow alt_id: UBERON:0003399 def: "A zone of skin that is part of a elbow [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cubital region zone of skin" EXACT [OBOL:automatic] synonym: "elbow skin" EXACT [] synonym: "elbow zone of skin" EXACT [OBOL:automatic] @@ -181240,6 +182300,8 @@ relationship: part_of UBERON:0001461 ! elbow id: UBERON:0001518 name: skin of wrist def: "A zone of skin that is part of a wrist [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "carpal region zone of skin" EXACT [OBOL:automatic] synonym: "wrist skin" EXACT [] synonym: "wrist zone of skin" EXACT [OBOL:automatic] @@ -181260,6 +182322,8 @@ relationship: part_of UBERON:0004452 ! carpal region id: UBERON:0001519 name: skin of manus def: "A zone of skin that is part of a manus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hand skin" EXACT [MA:0000630] synonym: "manus skin" EXACT [] @@ -181281,6 +182345,8 @@ relationship: part_of UBERON:0002398 ! manus id: UBERON:0001520 name: pronator teres def: "The pronator teres is a muscle of the human body (located mainly in the forearm) that, along with the pronator quadratus, serves to pronate the forearm (turning it so the palm faces posteriorly). [WP,unvetted]." [Wikipedia:Pronator_teres_muscle] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus pronator teres" RELATED OMO:0003011 [Wikipedia:Pronator_teres_muscle] synonym: "pronator teres muscle" RELATED [Wikipedia:Pronator_teres_muscle] @@ -181305,6 +182371,8 @@ id: UBERON:0001521 name: flexor carpi radialis muscle def: "A muscle of the forearm that acts to flex and abduct the manus. [WP,unvetted]." [Wikipedia:Flexor_carpi_radialis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "flexor carpi radialis" EXACT [MA:0002297] xref: AAO:0010733 @@ -181330,6 +182398,8 @@ id: UBERON:0001522 name: flexor carpi ulnaris muscle def: "The flexor carpi ulnaris muscle (FCU) is a muscle of the human forearm that acts to flex and adduct the manus. [WP,unvetted]." [Wikipedia:Flexor_carpi_ulnaris_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "flexor carpi ulnaris" EXACT [Wikipedia:Flexor_carpi_ulnaris_muscle] synonym: "musculus flexor carpi ulnaris" RELATED OMO:0003011 [Wikipedia:Flexor_carpi_ulnaris_muscle] @@ -181354,6 +182424,8 @@ id: UBERON:0001523 name: flexor digitorum profundus def: "A muscle in the forearm that flexes the manual digits[WP,modified]." [Wikipedia:Flexor_digitorum_profundus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "flexor digitorum profundus muscle" EXACT [Wikipedia:Flexor_digitorum_profundus_muscle] synonym: "musculus flexor digitorum profundus" RELATED OMO:0003011 [Wikipedia:Flexor_digitorum_profundus_muscle] @@ -181379,6 +182451,8 @@ id: UBERON:0001524 name: extensor carpi radialis longus muscle def: "Extensor carpi radialis longus is one of the five main muscles that control movements at the wrist. This muscle is quite long, starting on the lateral side of the humerus, and attaching to the base of the second metacarpal bone (metacarpal of the index finger). [WP,unvetted]." [Wikipedia:Extensor_carpi_radialis_longus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "extensor carpi radialis longus" EXACT [MA:0002291] synonym: "musculus extensor carpi radialis longus" RELATED OMO:0003011 [Wikipedia:Extensor_carpi_radialis_longus_muscle] @@ -181401,6 +182475,8 @@ id: UBERON:0001525 name: extensor carpi radialis brevis muscle def: "The Extensor carpi radialis brevis is shorter and thicker than the extensor carpi radialis longus. The longus muscle can be found above the distal end of the Extensor carpi radialis brevis. [WP,unvetted]." [Wikipedia:Extensor_carpi_radialis_brevis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "extensor carpi radialis brevis" EXACT [MA:0002290] synonym: "musculus extensor carpi radialis brevis" EXACT OMO:0003011 [Wikipedia:Extensor_carpi_radialis_brevis_muscle] @@ -181422,6 +182498,8 @@ id: UBERON:0001526 name: extensor carpi ulnaris muscle def: "Extensor carpi ulnaris is a muscle located in the forearm that acts to extend and adduct the wrist. Being an extensor muscle, extensor carpi ulnaris is on the posterior side of the forearm. [WP]." [Wikipedia:Extensor_carpi_ulnaris_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "ECU muscle" EXACT [] synonym: "extensor carpi ulnaris" EXACT [] @@ -181449,6 +182527,8 @@ property_value: external_definition "Muscle of the forearm: It shares a common o id: UBERON:0001527 name: abductor pollicis longus def: "The Abductor pollicis longus lies immediately below the Supinator and is sometimes united with it. [WP,unvetted]." [Wikipedia:Abductor_pollicis_longus_muscle] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "abductor pollicis longus muscle" RELATED [Wikipedia:Abductor_pollicis_longus_muscle] synonym: "musculus abductor pollicis longus" RELATED OMO:0003011 [Wikipedia:Abductor_pollicis_longus_muscle] @@ -181470,6 +182550,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/66/Gr id: UBERON:0001528 name: radio-ulnar joint def: "A joint that connects the radius and the ulna. Examples: proximal and distal radio-ulnar joints." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "articulation of the radus and ulna" EXACT [] @@ -181495,6 +182577,8 @@ name: brachiocephalic artery def: "The short first aortic arch branch and divides into the right subclavian artery and the right common carotid artery." [MGI:csmith, MP:0010663] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "brachiocephalic trunk" EXACT [MA:0001922] @@ -181529,6 +182613,8 @@ id: UBERON:0001530 name: common carotid artery plus branches def: "A bilaterally paired branched artery that originates from the aortic arches and divides into and includes as parts the internal and external carotid arteries[cjm]." [Wikipedia:Common_carotid_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "a. carotis communis" RELATED OMO:0003011 [Wikipedia:Common_carotid_artery] @@ -181565,6 +182651,8 @@ id: UBERON:0001531 name: right common carotid artery plus branches def: "The rightmost of the two common carotid arteries, originating from in the neck from the brachiocephalic trunk." [UBERON:cjm] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "right common carotid artery" EXACT [MA:0001928] synonym: "right common carotid artery" RELATED [FMA:3941] @@ -181589,6 +182677,8 @@ name: internal carotid artery def: "A terminal branch of the left or right common carotid artery which supplies oxygenated blood to the brain and eyes[MP]." [MGI:anna] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -181635,6 +182725,8 @@ id: UBERON:0001533 name: subclavian artery def: "One of two laterally paired arteries that supplies the pectoral appendages, usually branching from the dorsal aorta." [https://orcid.org/0000-0002-6601-2165, ISBN:0073040584] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: unverified_taxonomic_grouping @@ -181679,6 +182771,8 @@ id: UBERON:0001534 name: right subclavian artery def: "The subclavian artery that supplies the right pectoral appendage." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "arteria subclavia dextra" EXACT OMO:0003011 [FMA:3953, FMA:TA] @@ -181709,6 +182803,8 @@ name: vertebral artery def: "The first branch of the left and right subclavian arteries that merge to form the single midline basilar artery; branches of the vertebral arteries supply the musculature of the neck." [ISBN:0-683-40008-8, MP:0011513] comment: The two vertebral arteries and the basilar artery are sometimes together called the vertebrobasilar system, which supplies blood to the posterior part of circle of Willis and anastomoses with blood supplied to the anterior part of the circle of Willis from the carotid arteries. [WP,unvetted] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -181739,6 +182835,8 @@ id: UBERON:0001536 name: left common carotid artery plus branches def: "The leftmost of the two common carotid arteries, originating from the aortic arch in the thorax." [UBERON:cjm] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "left common carotid artery" EXACT [MA:0001927] synonym: "left common carotid artery" RELATED [FMA:4058] @@ -181763,6 +182861,8 @@ id: UBERON:0001537 name: anterior tibial artery def: "The anterior tibial artery of the lower limb carries blood to the anterior compartment of the leg and dorsal surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the anterior tibial vein, along its course. It crosses the anterior aspect of the ankle joint, at which point it becomes the dorsalis pedis artery. [WP,unvetted]." [Wikipedia:Anterior_tibial_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria tibialis anterior" RELATED OMO:0003011 [Wikipedia:Anterior_tibial_artery] xref: EMAPA:37071 {source="MA:th"} @@ -181782,6 +182882,8 @@ id: UBERON:0001538 name: posterior tibial artery def: "The posterior tibial artery of the lower limb carries blood to the posterior compartment of the leg and plantar surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the posterior tibial vein, along its course. [WP,unvetted]." [Wikipedia:Posterior_tibial_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria tibialis posterior" RELATED OMO:0003011 [Wikipedia:Posterior_tibial_artery] xref: EMAPA:37110 {source="MA:th"} @@ -181800,6 +182902,8 @@ id: UBERON:0001539 name: dorsalis pedis artery def: "A blood vessel of the lower limb that carries oxygenated blood to the dorsal surface of the foot. It arises at the anterior aspect of the ankle joint and is a continuation of the anterior tibial artery. It terminates at the proximal part of the first intermetatarsal space, where it divides into two branches, the first dorsal metatarsal artery and the deep plantar artery. Along its course, it is accompanied by a deep vein, the dorsalis pedis vein. [WP,unvetted]." [Wikipedia:Dorsalis_pedis_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria dorsalis pedis" EXACT OMO:0003011 [FMA:43915, FMA:TA] synonym: "arteria dorsalis pedis" RELATED OMO:0003011 [Wikipedia:Dorsalis_pedis_artery] @@ -181825,6 +182929,8 @@ id: UBERON:0001540 name: peroneal artery def: "An artery that supplies blood to the lateral compartment of the leg and is typically a branch of posterior tibial artery. [WP,unvetted]." [Wikipedia:Peroneal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria fibularis" EXACT OMO:0003011 [FMA:43921, FMA:TA] synonym: "fibular artery" EXACT [] xref: EMAPA:37674 {source="MA:th"} @@ -181845,6 +182951,8 @@ id: UBERON:0001541 name: medial plantar artery def: "The medial plantar artery (internal plantar artery), much smaller than the lateral, passes forward along the medial side of the foot. It is at first situated above the Abductor hallucis, and then between it and the Flexor digitorum brevis, both of which it supplies. At the base of the first metatarsal bone, where it is much diminished in size, it passes along the medial border of the first toe, anastomosing with the first dorsal metatarsal artery. Small superficial digital branches accompany the digital branches of the medial plantar nerve and join the plantar metatarsal arteries of the first three spaces. [WP,unvetted]." [Wikipedia:Medial_plantar_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "a. plantaris medialis" RELATED OMO:0003011 [Wikipedia:Medial_plantar_artery] xref: EMAPA:37101 {source="MA:th"} @@ -181866,6 +182974,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3e/Gr id: UBERON:0001542 name: inguinal lymph node def: "The lymph nodes located in the groin area." [MGI:cwg, MP:0002353] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: EMAPA:35431 @@ -181886,6 +182996,8 @@ id: UBERON:0001543 name: popliteal lymph node def: "The lymph nodes which drain the legs; contained in the popliteal fossa." [MGI:cwg, MP:0002352, Wikipedia:Popliteal_lymph_node] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "popliteal glands" RELATED [Wikipedia:Popliteal_lymph_nodes] @@ -181913,6 +183025,8 @@ id: UBERON:0001544 name: popliteal vein def: "The popliteal vein course runs alongside the popliteal artery but carries the blood from the knee joint and muscles in the thigh and calf back to the heart. Its origin is defined by the junction of the posterior tibial vein and anterior tibial vein. It drains the peroneal vein before reaching the knee joint and turns into the femoral vein when leaving the adductor canal (also known as Hunter's canal). The popliteal artery extends from the femoral artery behind the popliteal fossa which is the space behind the knee. [WP,unvetted]." [Wikipedia:Popliteal_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "vena poplitea" RELATED OMO:0003011 [Wikipedia:Popliteal_vein] xref: EMAPA:37181 {source="MA:th"} @@ -181937,6 +183051,8 @@ id: UBERON:0001545 name: anterior tibial vein def: "A vein of the lower limb that carries blood from the anterior compartment of the leg to the popliteal vein which is forms when it joins with the posterior tibial vein. Like most deep veins, the anterior tibial vein is accompanied by an artery of the same name, the anterior tibial artery, along its course. [WP,unvetted]." [Wikipedia:Anterior_tibial_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "venae tibiales anteriores" RELATED OMO:0003011 [Wikipedia:Anterior_tibial_vein] xref: EMAPA:37135 {source="MA:th"} @@ -181959,6 +183075,8 @@ id: UBERON:0001546 name: posterior tibial vein def: "A vein of the lower limb carries blood from the posterior compartment and plantar surface of the foot to the popliteal vein which it forms when it joins with the anterior tibial vein. Like most deep veins, the posterior tibial vein is accompanied by an artery of the same name, the posterior tibial artery, along its course. [WP,unvetted]." [Wikipedia:Posterior_tibial_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "venae tibiales posteriores" RELATED OMO:0003011 [Wikipedia:Posterior_tibial_vein] xref: EMAPA:37183 {source="MA:th"} @@ -181980,6 +183098,8 @@ id: UBERON:0001547 name: small saphenous vein def: "The small saphenous vein (also lesser saphenous vein), is a relatively large vein of the superficial posterior leg. [WP,unvetted]." [Wikipedia:Small_saphenous_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "lesser saphenous vein" EXACT [] synonym: "short saphenous vein" EXACT [] @@ -182003,6 +183123,8 @@ id: UBERON:0001548 name: lateral marginal vein def: "A continuation of the Dorsal venous arch of the foot and is the origin of the short saphenous vein." [Wikipedia:Lateral_marginal_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lateral marginal vein of foot" EXACT [] synonym: "vena marginalis lateralis" EXACT [] synonym: "vena marginalis lateralis pedis" EXACT OMO:0003011 [FMA:44359, FMA:TA] @@ -182021,6 +183143,8 @@ id: UBERON:0001549 name: dorsal metatarsal vein def: "The dorsal metatarsal veins are veins which drain the metatarsus of the foot. [WP,unvetted]." [Wikipedia:Dorsal_metatarsal_veins] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "metatarsal vein" EXACT [] synonym: "venae metatarsales dorsales" RELATED OMO:0003011 [Wikipedia:Dorsal_metatarsal_veins] xref: EMAPA:37143 {source="MA:th"} @@ -182042,6 +183166,8 @@ id: UBERON:0001550 name: medial marginal vein def: "A continuation of the Dorsal venous arch of the foot and is the origin of the long saphenous vein." [Wikipedia:Medial_marginal_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "medial marginal vein of foot" EXACT [] synonym: "vena marginalis medialis" EXACT [] synonym: "vena marginalis medialis pedis" EXACT OMO:0003011 [FMA:44420, FMA:TA] @@ -182057,6 +183183,8 @@ relationship: tributary_of UBERON:0001363 {source="FMA/obol"} ! great saphenous [Term] id: UBERON:0001551 name: vein of hindlimb zeugopod +subset: human_subset +subset: mouse_subset synonym: "sural vein" EXACT [FMA:44561] xref: EMAPA:37231 {source="MA:th"} xref: FMA:44561 @@ -182073,6 +183201,8 @@ id: UBERON:0001552 name: kidney arcuate artery def: "One of the curved arteries at the corticomedullary border of the kidney that arise from the interlobar arteries and give rise to the interlobular arteries." [MP:0011315, Wikipedia:Arcuate_artery_of_the_foot] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "arcuate artery" BROAD [MA:0002583] @@ -182094,6 +183224,8 @@ id: UBERON:0001553 name: medial tarsal artery def: "The medial tarsal arteries are two or three small branches which ramify on the medial border of the foot and join the medial malleolar net-work." [Wikipedia:Medial_tarsal_arteries] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:37102 {source="MA:th"} xref: FMA:44598 xref: MA:0001998 @@ -182111,6 +183243,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0001554 name: skin of hip def: "A zone of skin that is part of a hip region." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +subset: human_subset +subset: mouse_subset synonym: "hip region zone of skin" EXACT [OBOL:automatic] synonym: "hip skin" EXACT [] synonym: "hip zone of skin" EXACT [OBOL:automatic] @@ -182133,6 +183267,8 @@ id: UBERON:0001555 name: digestive tract def: "A tube extending from the mouth to the anus." [https://github.com/geneontology/go-ontology/issues/7549, Wikipedia:Talk\:Human_gastrointestinal_tract] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "alimentary canal" NARROW [] @@ -182181,6 +183317,8 @@ id: UBERON:0001556 name: lower urinary tract def: "Subdivision of urinary system which consists of the urinary bladder and the urethra." [FMA:45659] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: FMA:45659 @@ -182198,6 +183336,8 @@ id: UBERON:0001557 name: upper respiratory tract def: "The segment of the respiratory tract that starts proximally with the nose and ends distally with the cricoid cartilage, before continuing to the trachea." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: EHDAA2:0002136 @@ -182220,6 +183360,8 @@ id: UBERON:0001558 name: lower respiratory tract def: "The segment of the respiratory tract that starts proximally with the trachea and includes all distal structures including the lungs[WP,modified]." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Lower_respiratory_tract] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "lower respiratory system" EXACT [] @@ -182249,6 +183391,8 @@ consider: MA:0000581 [Term] id: UBERON:0001560 name: neck of organ +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "organ neck" EXACT [] xref: FMA:45733 @@ -182260,6 +183404,8 @@ id: UBERON:0001561 name: subcostal artery def: "An artery that runs along the bottom of the lowest rib. They constitute the lowest pair of branches derived from the thoracic aorta, and are in series with the intercostal arteries. Each passes along the lower border of the twelfth rib behind the kidney and in front of the Quadratus lumborum muscle, and is accompanied by the twelfth thoracic nerve. It then pierces the posterior aponeurosis of the Transversus abdominis, and, passing forward between this muscle and the Obliquus internus, anastomoses with the superior epigastric, lower intercostal, and lumbar arteries. Each subcostal artery gives off a posterior branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,unvetted]." [Wikipedia:Subcostal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: EMAPA:19097 xref: FMA:4613 @@ -182278,6 +183424,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0001562 name: digastric muscle group def: "A group of muscles (or in some classifications, muscle bellies) that are located under the jaw and attach to the base of the cranium and typically attaches to the hyoid apparatus via a common tendon." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "digastric" EXACT [MA:0002288] synonym: "digastric" RELATED [FMA:46291] @@ -182304,6 +183452,8 @@ property_value: taxon_notes "In most mammals there is a common tendon between th id: UBERON:0001563 name: longus capitis muscle def: "A muscle that arises by four tendinous slips from the transverse processes of the third, fourth, fifth, and sixth cervical vertebrae and inserts into the inferior surface of the basilar part of the occipital bone.[WP,modified]." [Wikipedia:Longus_capitis_muscle] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "longus capitis" EXACT [MA:0002340] synonym: "longus capitus muscle" RELATED [Wikipedia:Longus_capitis_muscle] @@ -182331,6 +183481,8 @@ name: mylohyoid muscle def: "The mylohyoid is a pharyngeal arch I muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to mylohyoid and attaches to the midline raphe linking right and left mylohyoid and the mandible." [MFMO:0000084] comment: Taxon motes: mylohyoideus and digastricus anterior of rats derived from intermandibularis posterior, see e.g. Jarvik [53] http://www.biomedcentral.com/1471-213X/8/24/table/T3 subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus mylohyoideus" EXACT [Wikipedia:Mylohyoid_muscle] synonym: "musculus mylohyoideus" RELATED OMO:0003011 [Wikipedia:Mylohyoid_muscle] @@ -182359,6 +183511,8 @@ id: UBERON:0001565 name: geniohyoid muscle def: "The geniohyoid is a muscle that attaches to the mandible and the hyoid apparatus and is innervated by the first cervical nerve (C1)." [MFMO:0000068] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "genio-hyoideus" EXACT [] synonym: "genio-hyoideus muscle" EXACT [] @@ -182390,6 +183544,8 @@ id: UBERON:0001566 name: cricothyroid muscle def: "Intrinsic muscle of the larynx, innervated by the external division of the laryngeal nerve, a branch of the vagus nerve. It attaches to the anterolateral surface of the cricoid cartilage and the external surface of the thyroid cartilage." [MFMO:0000324] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "cricothyroid" EXACT [] synonym: "cricothyroideus" EXACT [] @@ -182420,6 +183576,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f4/Mu id: UBERON:0001567 name: cheek def: "A fleshy subdivision of one side of the face bounded by an eye, ear and the nose." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Cheek] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "buccae" RELATED OMO:0003011 [Wikipedia:Cheek] @@ -182452,6 +183610,8 @@ id: UBERON:0001568 name: muscle of larynx def: "The muscles associated with the larynx." [MP:0002263] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "laryngeal muscle" EXACT [] synonym: "larynx muscle" EXACT [] @@ -182483,6 +183643,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0001569 name: constrictor muscle of pharynx def: "Pharyngeal constrictor refers to one of the muscles that serves to constrict the pharynx. They include: Superior pharyngeal constrictor muscle Middle pharyngeal constrictor muscle Inferior pharyngeal constrictor muscle." [Wikipedia:Pharyngeal_constrictor] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "pharyngeal constrictor muscle" EXACT [] xref: EMAPA:18964 @@ -182498,6 +183660,8 @@ property_value: editor_note "TODO - evaluate taxonomic specificity - functional id: UBERON:0001570 name: inferior pharyngeal constrictor def: "The inferior pharyngeal constrictor, the thickest of the three constrictors, arises from the sides of the cricoid and thyroid cartilage. Similarly to the superior and middle pharyngeal constrictor muscles, it is innervated by the vagus nerve (cranial nerve X), specifically, by branches from the pharyngeal plexus and by neuronal branches from the recurrent laryngeal nerve. [WP,unvetted]." [Wikipedia:Inferior_pharyngeal_constrictor_muscle] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "constrictor inferior" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle] synonym: "constrictor muscle of pharynx inferior" EXACT [MA:0002279] @@ -182530,6 +183694,8 @@ id: UBERON:0001571 name: genioglossus muscle def: "Either of a pair of lingual muscles with origin in the mandible, with insertion to the lingual fascia below the mucous membrane and epiglottis, with nerve supply from the hypoglossal nerve, and whose action depresses and protrudes the tongue." [VHOG:0000847, Wikipedia:Genioglossus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "genioglossus" EXACT [] synonym: "m. genioglossus" EXACT [] @@ -182565,6 +183731,8 @@ id: UBERON:0001572 name: hyoglossus muscle def: "A muscle that attaches to the hyopid bone and to the tongue and is innervated by cranial nerve XII." [FEED:rd] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "hyoglossus" EXACT [Wikipedia:Hyoglossus] synonym: "m. hyoglossus" EXACT [] @@ -182597,6 +183765,8 @@ property_value: external_definition "The hyoglossus is a muscle that attaches to id: UBERON:0001573 name: styloglossus def: "The Styloglossus, the shortest and smallest of the three styloid muscles, arises from the anterior and lateral surfaces of the styloid process, near its apex, and from the stylomandibular ligament. Passing downward and forward between the internal and external carotid arteries, it divides upon the side of the tongue near its dorsal surface, blending with the fibers of the Longitudinalis inferior in front of the Hyoglossus; the other, oblique, overlaps the Hyoglossus and decussates with its fibers. [WP,unvetted]." [Wikipedia:Styloglossus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus styloglossus" RELATED OMO:0003011 [Wikipedia:Styloglossus] synonym: "syloglossus muscle" EXACT [] @@ -182618,6 +183788,8 @@ id: UBERON:0001574 name: palatoglossus muscle def: "The palatoglossus, glossopalatinus, or palatoglossal muscle is a small fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the glossopalatine arch. It arises from the anterior surface of the soft palate, where it is continuous with the muscle of the opposite side, and passing downward, forward, and lateralward in front of the palatine tonsil, is inserted into the side of the tongue, some of its fibers spreading over the dorsum, and others passing deeply into the substance of the organ to intermingle with the Transversus linguæ. [WP,unvetted]." [Wikipedia:Palatoglossus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus palatoglossus" RELATED OMO:0003011 [Wikipedia:Palatoglossus_muscle] synonym: "palatoglossal" EXACT [] @@ -182645,6 +183817,8 @@ id: UBERON:0001575 name: extrinsic muscle of tongue def: "A muscle organ that attaches the tongue to some other structure." [https://github.com/obophenotype/uberon/issues/331, Wikipedia:Muscles_of_tongue] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "extrinsic lingual muscle" EXACT [] synonym: "extrinsic tongue muscle" EXACT [] xref: EHDAA2:0002063 @@ -182678,6 +183852,8 @@ id: UBERON:0001576 name: intrinsic muscle of tongue def: "The intrinsic tongue muscles are an integral part of the tongue and completely contained within the tongue that are innervated by Cranial Nerve XII." [http://www.feedexp.org/wiki/Mammalian_Muscle_Ontology_Workshop] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "intrinsic lingual muscle" EXACT [] synonym: "intrinsic tongue muscle" EXACT [] xref: EHDAA2:0002064 @@ -182706,6 +183882,8 @@ property_value: homology_notes "The lamprey head contains another group of muscl id: UBERON:0001577 name: facial muscle def: "A muscle innervated by a facial nerve." [FEED:rd] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cranial-facial muscle" RELATED [EMAPA:25133] @@ -182747,6 +183925,8 @@ name: orbicularis oculi muscle def: "A circumorbital muscle in the face that closes the eyelid[HP]." [Wikipedia:Orbicularis_oculi_muscle] comment: It arises from the nasal part of the frontal bone, from the frontal process of the maxilla in front of the lacrimal groove, and from the anterior surface and borders of a short fibrous band, the medial palpebral ligament. From this origin, the fibers are directed lateralward, forming a broad and thin layer, which occupies the eyelids or palpebræ, surrounds the circumference of the orbit, and spreads over the temple, and downward on the cheek. The palpebral portion of the muscle is thin and pale; it arises from the bifurcation of the medial palpebral ligament, forms a series of concentric curves, and is inserted into the lateral palpebral raphé. The orbital portion is thicker and of a reddish color; its fibers form a complete ellipse without interruption at the lateral palpebral commissure; the upper fibers of this portion blend with the Frontalis and Corrugator. The lacrimal part (Tensor tarsi) is a small, thin muscle, about 6 mm. in breadth and 12 mm. in length, situated behind the medial palpebral ligament and lacrimal sac. It arises from the posterior crest and adjacent part of the orbital surface of the lacrimal bone, and passing behind the lacrimal sac, divides into two slips, upper and lower, which are inserted into the superior and inferior tarsi medial to the puncta lacrimalia; occasionally it is very indistinct. [WP,unvetted]. [Wikipedia:Orbicularis_oculi_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "musculus orbicularis oculi" RELATED OMO:0003011 [Wikipedia:Orbicularis_oculi_muscle] @@ -182776,6 +183956,8 @@ id: UBERON:0001579 name: olfactory nerve def: "Nerve that carries information from the olfactory epithelium to the olfactory bulb[Butler and Hodos]." [ISBN:0471209627, Wikipedia:Olfactory_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -182837,6 +184019,8 @@ property_value: taxon_notes "connects to main OB (in taxa where main/accessory d id: UBERON:0001580 name: levator labii superioris def: "The levator labii superioris (or quadratus labii superioris) is a broad sheet, the origin of which extends from the side of the nose to the zygomatic bone. Its medial fibers form the angular head, which arises by a pointed extremity from the upper part of the frontal process of the maxilla and passing obliquely downward and lateralward divides into two slips. One of these is inserted into the greater alar cartilage and skin of the nose; the other is prolonged into the lateral part of the upper lip, blending with the infraorbital head and with the Orbicularis oris. The intermediate portion or infraorbital head arises from the lower margin of the orbit immediately above the infraorbital foramen, some of its fibers being attached to the maxilla, others to the zygomatic bone. Its fibers converge, to be inserted into the muscular substance of the upper lip between the angular head and the Caninus. The lateral fibers, forming the zygomatic head, arise from the malar surface of the zygomatic bone immediately behind the zygomaticomaxillary suture and pass downward and medialward to the upper lip. [WP,unvetted]." [Wikipedia:Levator_labii_superioris] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus levator labii superioris" RELATED OMO:0003011 [Wikipedia:Levator_labii_superioris] xref: EMAPA:37503 {source="MA:th"} @@ -182856,6 +184040,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8f/Le id: UBERON:0001581 name: depressor labii inferioris def: "A muscle of facial expression, innervated by the facial nerve, attached to the skin of the lower lip, orbicularis oris muscle, and mandible, and superficial and lateral to the mentalis muscle. See Diogo et al., 2009; Burrows et al., 2011)." [MFMO:0000123] +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: EMAPA:37516 {source="MA:th"} xref: FMA:46816 @@ -182880,6 +184066,8 @@ id: UBERON:0001582 name: buccinator muscle def: "The buccinator is a muscle that is attached to the mandible, skin, pterygomandibular raphe and maxilla, and is innervated by Cranial Nerve VII and participates in oropharyngeal behavior." [FEED:cw, FEED:rd, http://www.feedexp.org/, MFMO:0000002] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "buccinator" EXACT [] synonym: "buccinatorius" RELATED [MFMO:0000002] @@ -182917,6 +184105,8 @@ property_value: editor_note "logical definition provided by FEED" xsd:string id: UBERON:0001583 name: extrinsic auricular muscle def: "Auricular muscle attaching the cartilage of the ear to the epicranial aponeurosis. The 3 extrinsic auricular muscles in humans are: anterior auricular muscle superior auricular muscle posterior auricular muscle [WP,modified]." [http://www.daviddarling.info/encyclopedia/A/auricle.html, Wikipedia:Auriculares_muscles] +subset: human_subset +subset: mouse_subset xref: EMAPA:37527 {source="MA:th"} xref: FMA:46854 xref: MA:0001230 @@ -182936,6 +184126,8 @@ id: UBERON:0001584 name: left subclavian artery def: "The subclavian artery that supplies the left pectoral appendage." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "arteria subclavia (sinistra)" EXACT OMO:0003011 [FMA:4694, FMA:TA] @@ -182965,6 +184157,8 @@ id: UBERON:0001585 name: anterior vena cava def: "A vein that carries deoxygenated blood from the upper half of the body into the right atrium of the heart." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Superior_vena_cava] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cranial vena cava" RELATED [VHOG:0001195] @@ -183003,6 +184197,8 @@ id: UBERON:0001586 name: internal jugular vein def: "One of two jugular veins that collect the blood from the brain, the superficial parts of the face, and the neck. [WP,unvetted]." [Wikipedia:Internal_jugular_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "internal jugular" EXACT [EHDAA2:0000877] synonym: "internal jugular venous tree" EXACT [] @@ -183033,6 +184229,8 @@ id: UBERON:0001587 name: subclavian vein def: "The subclavian vein is a paired large vein, one on either side of the body. Their diameter is approximately that of the smallest finger." [Wikipedia:Subclavian_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "subclavian venous tree" EXACT [] synonym: "vena subclavia" EXACT OMO:0003011 [Wikipedia:Subclavian_vein] @@ -183062,6 +184260,8 @@ id: UBERON:0001588 name: vertebral vein def: "The vertebral vein is formed in the suboccipital triangle, from numerous small tributaries which spring from the internal vertebral venous plexuses and issue from the vertebral canal above the posterior arch of the atlas. They unite with small veins from the deep muscles at the upper part of the back of the neck, and form a vessel which enters the foramen in the transverse process of the atlas, and descends, forming a dense plexus around the vertebral artery, in the canal formed by the foramina transversaria of the cervical vertebrae. This plexus ends in a single trunk, which emerges from the foramen transversarium of the sixth cervical vertebra, and opens at the root of the neck into the back part of the innominate vein near its origin, its mouth being guarded by a pair of valves. On the right side, it crosses the first part of the subclavian artery. [WP,unvetted]." [Wikipedia:Vertebral_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "vena vertebralis" RELATED OMO:0003011 [Wikipedia:Vertebral_vein] xref: AAO:0010509 @@ -183085,6 +184285,8 @@ id: UBERON:0001589 name: internal thoracic vein def: "A vessel that drains the chest wall and breats and arises from the superior epigastric vein, accompanies the internal thoracic artery along its course and terminates in the brachiocephalic vein." [Wikipedia:Internal_thoracic_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "internal mammary vein" RELATED INCONSISTENT [Wikipedia:Internal_thoracic_vein] synonym: "vena thoracica interna" RELATED OMO:0003011 [Wikipedia:Internal_thoracic_vein] @@ -183106,6 +184308,8 @@ id: UBERON:0001590 name: pericardiacophrenic vein def: "Vena comitans of the pericardiacophrenic arteries." [Wikipedia:Pericardiacophrenic_veins] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "venae pericardiacophrenicae" RELATED OMO:0003011 [Wikipedia:Pericardiacophrenic_veins] xref: EMAPA:37178 {source="MA:th"} xref: FMA:4742 @@ -183125,6 +184329,8 @@ id: UBERON:0001591 name: thymic vein def: "A vein that drains blood from the thymus." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "thymic tributary of brachiocephalic vein" EXACT [] synonym: "vena thymica" EXACT OMO:0003011 [Wikipedia:Thymic_veins] synonym: "venae thymicae" RELATED OMO:0003011 [Wikipedia:Thymic_veins] @@ -183148,6 +184354,8 @@ id: UBERON:0001592 name: bronchial vein def: "The bronchial veins are small vessels that return blood from the larger bronchi and structures at the roots of the lungs. The right side drains into the azygos vein, while the left side drains into the left superior intercostal vein or the accessory hemiazygos vein. The bronchial veins are counterparts to the bronchial arteries. The veins, however, do not return all of the blood supplied by the arteries; much of the blood that is carried in the bronchial arteries is returned to the heart via the pulmonary veins. [WP,unvetted]." [Wikipedia:Bronchial_veins] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "bronchial venous tree" EXACT [] xref: EMAPA:36284 @@ -183168,6 +184376,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0001593 name: venous plexus def: "A congregation of multiple veins." [Wikipedia:Venous_plexus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "plexus venosus" RELATED OMO:0003011 [Wikipedia:Venous_plexus] synonym: "rete venosum" RELATED OMO:0003011 [Wikipedia:Venous_plexus] @@ -183190,6 +184400,8 @@ id: UBERON:0001594 name: azygos vein def: "An unpaired vein which in humans arises from the right ascending lumbar vein or the vena cava, enters the thorax through the aortic orifice in the diaphragm, and terminates in the superior vena cava; unlike humans, mice have a single and left-sided azygos vein that develops from the paired embryonic cardinal venous system and drains most of the right and left thoracic walls into the left anterior vena cava[MP]." [MP:0011569, Wikipedia:Azygos_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "azygos venous tree" EXACT [] @@ -183215,6 +184427,8 @@ property_value: editor_note "check development relationships in different specie id: UBERON:0001595 name: auricular muscle def: "A muscle that is part of the pinna and is attached to the auricular cartilage." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "attolens aurem muscle" RELATED [Wikipedia:Auricular_muscles] synonym: "attrahens aurem muscle" RELATED [Wikipedia:Auricular_muscles] synonym: "auriclular" BROAD [] @@ -183243,6 +184457,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gr id: UBERON:0001596 name: intrinsic auricular muscle def: "Auricular muscle attached only to the cartilage of the ear and not to the epicranial aponeurosis." [http://www.daviddarling.info/encyclopedia/A/auricle.html] +subset: human_subset +subset: mouse_subset xref: EMAPA:37528 {source="MA:th"} xref: FMA:48967 xref: MA:0001231 @@ -183256,6 +184472,8 @@ def: "Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, i subset: efo_slim subset: feed_aligned subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "masseter" EXACT [BTO:0001755, FMA:48996, MA:0002343] @@ -183298,6 +184516,8 @@ id: UBERON:0001598 name: temporalis muscle def: "Pharyngeal arch 1 muscle that is innervated by the deep temporal branches of the trigeminal nerve and attaches to the wall of the braincase (including the cranial vault) and mandible." [MFMO:0000085] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "jaw adductor muscle" BROAD [] @@ -183334,6 +184554,8 @@ id: UBERON:0001599 name: stapedius muscle def: "The muscle that stabilizes the stapes bone. The stapedius emerges from a pinpoint foramen in the apex of the pyramidal eminence (a hollow, cone-shaped prominence in the posterior wall of the tympanic cavity), and inserts into the neck of the stapes. [WP,unvetted]." [Wikipedia:Stapedius_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "musculus stapedius" RELATED OMO:0003011 [Wikipedia:Stapedius_muscle] @@ -183367,6 +184589,8 @@ name: tensor tympani alt_id: UBERON:0005238 def: "The larger of the two muscles of the tympanic cavity, is contained in the bony canal above the osseous portion of the auditory tube. Its role is to dampen sounds produced from chewing. It arises from the cartilaginous portion of the auditory tube and the adjoining part of the great wing of the sphenoid, as well as from the osseous canal in which it is contained. Passing backward through the canal, it ends in a slender tendon which enters the tympanic cavity, makes a sharp bend around the extremity of the septum, known as the processus cochleariformis[1], and is inserted into the manubrium of the malleus, near its root[WP]." [Wikipedia:Tensor_tympani_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "eustachian muscle" EXACT [] synonym: "M. tensor tympani" RELATED [Wikipedia:Tensor_tympani_muscle] @@ -183407,6 +184631,8 @@ alt_id: UBERON:0006229 def: "Skeletal muscle derived from cranial mesoderm and controls eye movements." [GO:0002074, Wikipedia:Extraocular_muscles] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -183459,6 +184685,8 @@ alt_id: UBERON:0004836 def: "The medial rectus muscle is a muscle in the orbit. As with most of the muscles of the orbit, it is innervated by the inferior division of the oculomotor nerve (Cranial Nerve III). This muscle shares an origin with several other extrinsic eye muscles, the anulus tendineus, or common tendon. It is the largest of the extraocular muscles and its only action is adduction of the eyeball. [WP,unvetted]." [Wikipedia:Medial_rectus_muscle] comment: Taxon notes (from VHOG): "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.331 [VHOG:0001127] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -183493,6 +184721,8 @@ name: lateral rectus extra-ocular muscle alt_id: UBERON:0004837 def: "The lateral rectus muscle is a muscle in the orbit. It is one of six extraocular muscles that control the movements of the eye (abduction in this case) and the only muscle innervated by the abducens nerve, cranial nerve VI. [WP,unvetted]." [Wikipedia:Lateral_rectus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -183527,6 +184757,8 @@ property_value: homology_notes "The ability to rotate the eyeball is common to a id: UBERON:0001604 name: levator palpebrae superioris def: "The levator palpebrae superioris (or levator muscle of upper eyelid) is the muscle in the orbit that elevates the superior (upper) eyelid. [WP,unvetted]." [Wikipedia:Levator_palpebrae_superioris] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: EMAPA:36652 @@ -183547,6 +184779,8 @@ id: UBERON:0001605 name: ciliary muscle def: "The ciliary muscle is a ring of smooth muscle in the middle layer of the eye that controls the eye's accommodation for viewing objects at varying distances and regulates the flow of aqueous humour through Schlemm's canal. [WP,unvetted]." [Wikipedia:Ciliary_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "Bowman`s muscles" RELATED [BTO:0000654] @@ -183572,6 +184806,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/28/Gr [Term] id: UBERON:0001606 name: muscle of iris +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "iris muscle" EXACT [] synonym: "iris muscle organ" EXACT [OBOL:automatic] @@ -183592,6 +184828,8 @@ property_value: taxon_notes "The muscle cells of the iris are smooth muscle in m id: UBERON:0001607 name: sphincter pupillae def: "A sphincter muscle that is part of the iris." [Wikipedia:Iris_sphincter_muscle] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "circular fibers" RELATED [Wikipedia:Iris_sphincter_muscle] synonym: "constrictor pupillae" RELATED [Wikipedia:Iris_sphincter_muscle] @@ -183638,6 +184876,8 @@ id: UBERON:0001608 name: dilatator pupillae def: "A smooth muscle of the eye, running radially in the iris that functions as a dilator. [WP,unvetted]." [Wikipedia:Iris_dilator_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "dilator muscle of pupil" EXACT [] synonym: "dilator of pupil" EXACT [] @@ -183679,6 +184919,8 @@ property_value: function_notes "It is innervated by the sympathetic system, whic id: UBERON:0001609 name: isthmus of thyroid gland def: "A narrow median bridge that joins together the lower thirds of the two lateral (right and left) lobes of the thyroid gland and usually covers the second and the third tracheal rings; the thyroid isthmus is variable in presence and size, can change shape and size, and can encompass a cranially extending pyramid lobe (lobus pyramidalis or processus pyramidalis), remnant of the thyroglossal duct." [MP:0013163] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "isthmus" BROAD [VHOG:0000739] synonym: "isthmus glandulae thyroideae" EXACT OMO:0003011 [] @@ -183709,6 +184951,8 @@ id: UBERON:0001610 name: lingual artery def: "The lingual artery arises from the external carotid between the superior thyroid and facial artery[WP]." [Wikipedia:Lingual_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria lingualis" RELATED OMO:0003011 [Wikipedia:Lingual_artery] synonym: "lingual branch of external carotid artery" EXACT [] @@ -183738,6 +184982,8 @@ id: UBERON:0001611 name: sublingual artery def: "A branch of the lingual artery that supplies the sublingual gland." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria sublingualis" RELATED OMO:0003011 [Wikipedia:Sublingual_artery] synonym: "sublingual branch of lingual artery" EXACT [] @@ -183766,6 +185012,8 @@ id: UBERON:0001612 name: facial artery def: "A branch of the external carotid artery that supplies structures of the face. [WP,unvetted]." [Wikipedia:Facial_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria maxillaris externa" RELATED OMO:0003011 [Wikipedia:Facial_artery] synonym: "external maxillary artery" RELATED [] @@ -183790,6 +185038,8 @@ id: UBERON:0001613 name: occipital artery def: "The occipital artery arises opposite the facial artery, its path is below the posterior belly of digastric to the occipital region. This artery supplies blood to the back of the scalp and sterno-mastoid muscles. Other muscles it supplies are deep muscles in the back and neck. [WP,unvetted]." [Wikipedia:Occipital_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria occipitalis" RELATED OMO:0003011 [Wikipedia:Occipital_artery] xref: EMAPA:37672 {source="MA:th"} @@ -183815,6 +185065,8 @@ id: UBERON:0001614 name: superficial temporal artery def: "A major artery of the head that arises from the external carotid artery when it bifurcates into the superficial temporal artery and maxillary artery. Its pulse is palpable superior to the zygomatic arch, anterior and superior to the tragus. [WP,unvetted]." [Wikipedia:Superficial_temporal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria temporalis superficialis" RELATED OMO:0003011 [Wikipedia:Superficial_temporal_artery] xref: BTO:0003747 @@ -183834,6 +185086,8 @@ id: UBERON:0001615 name: transverse facial artery def: "The transverse facial artery is an artery that branches from the superficial temporal artery and runs across the face. [WP,unvetted]." [Wikipedia:Transverse_facial_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria transversa faciei" RELATED OMO:0003011 [Wikipedia:Transverse_facial_artery] xref: EMAPA:37130 {source="MA:th"} @@ -183859,6 +185113,8 @@ id: UBERON:0001616 name: maxillary artery def: "An artery that supplies deep structures of the face. It comes just out behind the neck of the mandible. [WP,unvetted]." [Wikipedia:Maxillary_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria maxillaris" RELATED OMO:0003011 [Wikipedia:Maxillary_artery] synonym: "internal maxillary artery" RELATED [] @@ -183889,6 +185145,8 @@ id: UBERON:0001617 name: mental artery def: "The mental branch of inferior alveolar artery escapes with the nerve at the mental foramen, supplies the chin, and anastomoses with the submental and inferior labial arteries. [WP,unvetted]." [Wikipedia:Mental_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "mental branch of inferior alveolar artery" EXACT [] synonym: "ramus mentalis (arteria alveolaris inferior)" EXACT OMO:0003011 [FMA:49701, FMA:TA] @@ -183913,6 +185171,8 @@ id: UBERON:0001618 name: buccal artery def: "The buccal artery (buccinator artery) is small and runs obliquely forward, between the Pterygoideus internus and the insertion of the Temporalis, to the outer surface of the Buccinator, to which it is distributed, anastomosing with branches of the external maxillary and with the infraorbital. [WP,unvetted]." [Wikipedia:Buccal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria buccalis" RELATED OMO:0003011 [Wikipedia:Buccal_artery] synonym: "arteria buccinatoria" RELATED OMO:0003011 [Wikipedia:Buccal_artery] @@ -183940,6 +185200,8 @@ id: UBERON:0001619 name: ophthalmic artery def: "The ophthalmic artery is a branch of the internal carotid artery which supplies branches to supply the eye and other structures in the orbit. It enters the orbit together with the Optic nerve through the Optic foramen/canal. [WP,modified]." [Wikipedia:Ophthalmic_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria ophthalmica" RELATED OMO:0003011 [Wikipedia:Ophthalmic_artery] synonym: "opthalmic artery" RELATED [Wikipedia:Ophthalmic_artery] @@ -183971,6 +185233,8 @@ id: UBERON:0001620 name: central retinal artery def: "The central retinal artery (retinal artery) branches off the ophthalmic artery, running inferior to the optic nerve within its dural sheath to the eyeball. [WP,unvetted]." [Wikipedia:Central_retinal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria centralis retinae" RELATED OMO:0003011 [Wikipedia:Central_retinal_artery] synonym: "central artery of retina" EXACT [] @@ -184002,6 +185266,8 @@ id: UBERON:0001621 name: coronary artery def: "An artery that supplies the myocardium." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Coronary_circulation#Coronary_anatomy] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "coronary arterial tree" EXACT [] @@ -184032,6 +185298,8 @@ id: UBERON:0001622 name: lacrimal artery def: "The lacrimal artery arises close to the optic foramen, and is one of the largest branches derived from the ophthalmic artery: not infrequently it is given off before the artery enters the orbit. It accompanies the lacrimal nerve along the upper border of the Lateral Rectus, supplies the lacrimal gland. [WP,unvetted]." [Wikipedia:Lacrimal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "a. lacrimalis" RELATED OMO:0003011 [Wikipedia:Lacrimal_artery] xref: EMAPA:37094 {source="MA:th"} @@ -184055,6 +185323,8 @@ id: UBERON:0001623 name: dorsal nasal artery def: "The dorsal nasal artery (nasal artery) is an artery of the head. It is one of the two terminal branches of the ophthalmic artery. [WP,unvetted]." [Wikipedia:Dorsal_nasal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria dorsalis nasi" RELATED OMO:0003011 [Wikipedia:Dorsal_nasal_artery] synonym: "dorsal nasal branch of ophthalmic artery" EXACT [FMA:50000] @@ -184075,6 +185345,8 @@ id: UBERON:0001624 name: anterior cerebral artery def: "One of a pair of arteries on the brain that supply oxygen to most medial portions of frontal lobes and superior medial parietal lobes. The 2 anterior cerebral arteries arise from the internal carotid artery and are part of the Circle of Willis." [Wikipedia:Anterior_cerebral_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria cerebri anterior" RELATED OMO:0003011 [Wikipedia:Anterior_cerebral_artery] xref: EHDAA2:0000128 @@ -184099,6 +185371,8 @@ id: UBERON:0001625 name: right coronary artery def: "Coronary artery which runs along the right side of the heart and predominantly supplies the mycocardium of the right side of the heart[Wikipedia,modified]." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Right_coronary_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria coronaria dextra" RELATED OMO:0003011 [Wikipedia:Right_coronary_artery] synonym: "right coronary arterial tree" RELATED [] @@ -184124,6 +185398,8 @@ id: UBERON:0001626 name: left coronary artery def: "Coronary artery which runs along the left side of the heart and predominantly supplies the mycocardium of the left side of the heart[Wikipedia,modified]." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Left_coronary_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria coronaria sinistra" RELATED OMO:0003011 [Wikipedia:Left_coronary_artery] synonym: "left coronary arterial tree" RELATED [] @@ -184149,6 +185425,8 @@ id: UBERON:0001627 name: middle cerebral artery def: "The middle cerebral artery (MCA) is one of the three major paired arteries that supplies blood to the cerebrum. The MCA arises from the internal carotid and continues into the lateral sulcus where it then branches and projects to many parts of the lateral cerebral cortex. It also supplies blood to the anterior temporal lobes and the insular cortices. The left and right MCAs rise from trifurcations of the internal carotid arteries and thus are connected to the anterior cerebral arteries and the posterior communicating arteries, which connect to the posterior cerebral arteries. The MCAs are not considered a part of the Circle of Willis. [WP,unvetted]." [Wikipedia:Middle_cerebral_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria cerebri media" RELATED OMO:0003011 [Wikipedia:Middle_cerebral_artery] synonym: "Sylvian artery" EXACT [] @@ -184174,6 +185452,8 @@ id: UBERON:0001628 name: posterior communicating artery def: "One of a pair of right-sided and left-sided blood vessels in the circle of Willis. It connects the three cerebral arteries of the same side. Anteriorly, it is one portion of the terminal trifurcation of the internal carotid artery. The anterior cerebral artery and the middle cerebral artery are the other two branches of the trifurcation. Posteriorly, it communicates with the posterior cerebral artery." [Wikipedia:Posterior_communicating_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "arteria cerebri communicans posterior" RELATED OMO:0003011 [Wikipedia:Posterior_communicating_artery] @@ -184213,6 +185493,8 @@ property_value: taxon_notes "todo - verify ZFA link: An artery that connects cau id: UBERON:0001629 name: carotid body def: "A small epithelioid structure consisting of a small cluster of chemoreceptive and supporting cells located near the bifurcation of the common carotid artery that serves as a chemoreceptive organ that senses the pH, carbon dioxide, and oxygen concentrations in the blood and plays a crucial role in their homeostatic control." [MP:0003438] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -184244,6 +185526,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gr id: UBERON:0001630 name: muscle organ def: "Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work[GO]." [GO:0007517] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -184275,6 +185559,8 @@ id: UBERON:0001631 name: thoracic duct def: "A major lymphatic vessel that drains lymph from the lower body, left appendage, and left thorax into the junction of the left jugular and subclavian veins." [Wikipedia:Thoracic_duct] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -184306,6 +185592,8 @@ property_value: external_definition "The thoracic duct is the first perfused lym id: UBERON:0001632 name: temporal artery subset: grouping_class +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: EMAPA:37127 {source="MA:th"} xref: FMA:50438 @@ -184326,6 +185614,8 @@ id: UBERON:0001633 name: basilar artery def: "A major artery that supplues the hindbrain and runs along the ventral keel of the hindbrain." [https://orcid.org/0000-0003-3308-6245] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: unverified_taxonomic_grouping @@ -184364,6 +185654,8 @@ id: UBERON:0001634 name: mesencephalic artery def: "The major artery of the midbrain, which crosses the midbrain medially to meet its partner the mesencephalic vein." [PMID:12606281, XAO:0004173] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "MsA" EXACT OMO:0003000 [ZFA:0001068] xref: FMA:50570 xref: TAO:0001068 @@ -184385,6 +185677,8 @@ id: UBERON:0001635 name: superior cerebellar artery def: "The superior cerebellar artery (SCA) arises near the termination of the basilar artery. It passes lateralward, immediately below the oculomotor nerve, which separates it from the posterior cerebral artery, winds around the cerebral peduncle, close to the trochlear nerve, and, arriving at the upper surface of the cerebellum, divides into branches which ramify in the pia mater and anastomose with those of the inferior cerebellar arteries. Several branches are given to the pineal body, the anterior medullary velum, and the tela chorioidea of the third ventricle. [WP,unvetted]." [Wikipedia:Superior_cerebellar_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria superior cerebelli" RELATED OMO:0003011 [Wikipedia:Superior_cerebellar_artery] xref: EHDAA2:0000681 @@ -184414,6 +185708,8 @@ id: UBERON:0001636 name: posterior cerebral artery def: "The posterior cerebral artery (PCA) is one of a pair of blood vessels that supplies oxygenated blood to the posterior aspect of the brain in human anatomy]. It arises near the intersection of the posterior communicating artery and the basilar artery and connects with the ipsilateral middle cerebral artery (MCA) and internal carotid artery via the posterior communicating artery (PCommA). [WP,unvetted]." [Wikipedia:Posterior_cerebral_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria cerebri posterior" RELATED OMO:0003011 [Wikipedia:Posterior_cerebral_artery] xref: EHDAA2:0000659 @@ -184445,6 +185741,8 @@ id: UBERON:0001637 name: artery def: "An epithelial tube or tree of tibes that transports blood away from the heart[modified from AEO definition]." [AEO:JB] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -184491,6 +185789,8 @@ id: UBERON:0001638 name: vein def: "Any of the tubular branching vessels that carry blood from the capillaries toward the heart." [Wikipedia:Vein] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -184540,6 +185840,8 @@ id: UBERON:0001639 name: hepatic portal vein def: "A portal vein that transports nutrients from the digestive tract to the liver[Kardong]." [http://sourceforge.net/tracker/?func=detail&aid=3091300&group_id=76834&atid=1205376, ISBN:0073040584, Wikipedia:Hepatic_portal_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -184576,6 +185878,8 @@ name: celiac artery def: "The first major branch of the abdominal aorta." [Wikipedia:Celiac_artery] comment: dorsal aorta in Kardong subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "arteria coeliaca" RELATED OMO:0003011 [Wikipedia:Celiac_artery] @@ -184614,6 +185918,8 @@ id: UBERON:0001641 name: transverse sinus def: "One of the dural venous sinuses and drains the superior sagittal sinus the occipital sinus and the straight sinus, and empties into the sigmoid sinus which in turn reaches the jugular bulb." [http://radiopaedia.org/articles/transverse-sinus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "groove for right and left transverse sinuses" RELATED [Wikipedia:Transverse_sinuses] synonym: "lateral sinus" RELATED [FMA:50763] @@ -184641,6 +185947,8 @@ id: UBERON:0001642 name: superior sagittal sinus def: "The superior sagittal sinus (also known as the superior longitudinal sinus), within a human cranium, is an area above/behind the brain, which allows blood veins to span the area, from the top of the head towards the back. It is believed that the cerebrospinal fluid drains through the arachnoid granulations into the dural venous sinuses of the superior sagittal sinus. [WP,unvetted]." [Wikipedia:Superior_sagittal_sinus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "sinus sagittalis superior" RELATED OMO:0003011 [Wikipedia:Superior_sagittal_sinus] xref: EMAPA:18636 @@ -184661,6 +185969,8 @@ id: UBERON:0001643 name: oculomotor nerve def: "Cranial nerve which connects the midbrain to the extra-ocular and intra-ocular muscles." [ISBN:0471209627, Wikipedia:Oculomotor_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -184720,6 +186030,8 @@ id: UBERON:0001644 name: trochlear nerve def: "A cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Trochlear_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -184780,6 +186092,8 @@ name: trigeminal nerve def: "Cranial nerve that has three branches - the ophthalmic (supplying the skin of the nose and upper jaw), the maxillary and the mandibular (supplying the lower jaw)." [ISBN:0471209627, Wikipedia:Trigeminal_nerve] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -184846,6 +186160,8 @@ id: UBERON:0001646 name: abducens nerve def: "Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Abducens_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -184907,6 +186223,8 @@ id: UBERON:0001647 name: facial nerve def: "Cranial nerve that branches into the supraorbital (supplying the skin of the eye region and the lateral line organs here), the palatine (to the roof of the buccal cavity), and the hyomandibular (dividing into the jugular and mental branches)." [ISBN:0471209627, Wikipedia:Facial_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -184973,6 +186291,8 @@ id: UBERON:0001648 name: vestibulocochlear nerve def: "Cranial nerve that transmits sound and equilibrium (balance) information from the inner ear to the brain." [ISBN:0471209627, Wikipedia:Vestibulocochlear_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -185040,6 +186360,8 @@ id: UBERON:0001649 name: glossopharyngeal nerve def: "Cranial nerve that branches into the ramus communicans (to the skin), the pretrematic (to the walls of the pharynx and mouth, viscero-sensory fibers), and the larval post-trematic branch (lost in the adult)." [ISBN:0471209627, Wikipedia:Glossopharyngeal_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -185095,6 +186417,8 @@ id: UBERON:0001650 name: hypoglossal nerve def: "Cranial nerve that innervates the muscles of the tongue." [http://orcid.org/0000-0002-6601-2165, ISBN:080184780X, VHOG:0000693] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "12n" BROAD OMO:0003000 [BIRNLEX:820, NIFSTD:NeuroNames_abbrevSource] @@ -185155,6 +186479,8 @@ id: UBERON:0001651 name: right pulmonary artery def: "The pulmonary artery that supplies the right lung." [UBERON:cjm] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria pulmonalis dextra" RELATED OMO:0003011 [Wikipedia:Right_pulmonary_artery] synonym: "right main pulmonary artery" EXACT [] @@ -185185,6 +186511,8 @@ id: UBERON:0001652 name: left pulmonary artery def: "The pulmonary artery that supplies the left lung." [UBERON:cjm] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria pulmonalis sinistra" RELATED OMO:0003011 [Wikipedia:Left_pulmonary_artery] synonym: "left main pulmonary artery" EXACT [] @@ -185215,6 +186543,8 @@ id: UBERON:0001653 name: facial vein def: "The anterior facial vein (facial vein) commences at the side of the root of the nose, and is a direct continuation of the angular vein where it also receives a small nasal branch. It lies behind the facial artery and follows a less tortuous course. It receives blood from the external palatine vein before it either joins the anterior branch of the retromandibular vein to form the common facial vein, or drains directly into the internal jugular vein. [WP,unvetted]." [Wikipedia:Facial_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "anterior facial vein" RELATED INCONSISTENT [Wikipedia:Facial_vein] synonym: "face vein" EXACT [OBOL:automatic] @@ -185243,6 +186573,8 @@ id: UBERON:0001654 name: supraorbital vein def: "The supraorbital vein begins on the forehead where it communicates with the frontal branch of the superficial temporal vein. It runs downward superficial to the Frontalis muscle, and joins the frontal vein at the medial angle of the orbit to form the angular vein. Previous to its junction with the frontal vein, it sends through the supraorbital notch into the orbit a branch which communicates with the ophthalmic vein; as this vessel passes through the notch, it receives the frontal diploic vein through a foramen at the bottom of the notch. The areas drained by this vessel are the forehead, eyebrow and upper eyelid. [WP,unvetted]." [Wikipedia:Supra-orbital_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "supra-orbital vein" EXACT [FMA:50904] xref: EMAPA:37195 {source="MA:th"} @@ -185264,6 +186596,8 @@ id: UBERON:0001655 name: submental vein def: "A vein in the chin that is connected to the sublingual and anterior jugular veins and drains into the facial vein." [ncithesaurus:Submental_Vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:37188 {source="MA:th"} xref: FMA:50925 xref: MA:0002223 @@ -185282,6 +186616,8 @@ id: UBERON:0001656 name: retromandibular vein def: "The retromandibular vein (temporomaxillary vein, posterior facial vein), formed by the union of the superficial temporal and maxillary veins, descends in the substance of the parotid gland, superficial to the external carotid artery but beneath the facial nerve, between the ramus of the mandible and the sternocleidomastoideus muscle. It divides into two branches: an anterior, which passes forward and unites with the anterior facial vein to form the common facial vein. a posterior, which is joined by the posterior auricular vein and becomes the external jugular vein. [WP,unvetted]." [Wikipedia:Retromandibular_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "posterior facial vein" EXACT [] synonym: "vena facialis posterior" RELATED OMO:0003011 [Wikipedia:Retromandibular_vein] @@ -185304,6 +186640,8 @@ id: UBERON:0001657 name: superficial temporal vein def: "The superficial temporal vein is a vein of the side of the head. [WP,unvetted]." [Wikipedia:Superficial_temporal_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "venae temporales superficiales" RELATED OMO:0003011 [Wikipedia:Superficial_temporal_vein] xref: BTO:0003748 @@ -185324,6 +186662,8 @@ id: UBERON:0001658 name: middle temporal vein def: "A temporal vein that arises near the lateral angle of the eye; joins the superficial temporal veins to form the retromandibular vein." [http://medical-dictionary.thefreedictionary.com/middle+temporal+vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:37176 {source="MA:th"} xref: FMA:50935 xref: MA:0002241 @@ -185338,6 +186678,8 @@ id: UBERON:0001659 name: transverse facial vein def: "A tributary of the superficial temporal or retromandibular veins, anastomosing with the facial vein." [http://medical-dictionary.thefreedictionary.com/transverse+facial+vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: EMAPA:37200 {source="MA:th"} xref: FMA:50938 @@ -185359,6 +186701,8 @@ id: UBERON:0001660 name: maxillary vein def: "A vein that consists of a short trunk which accompanies the first part of the internal maxillary artery. It is formed by a confluence of the veins of the pterygoid plexus, and passes backward between the sphenomandibular ligament and the neck of the mandible, and unites with the superficial temporal vein to form the retromandibular vein. [WP,unvetted]." [Wikipedia:Maxillary_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: EMAPA:37169 {source="MA:th"} xref: FMA:50941 @@ -185379,6 +186723,8 @@ id: UBERON:0001661 name: deep temporal vein def: "The blood vessels at the vertex and on either side of the head that drain deoxygenated blood into the pterygoid venous plexus." [ncithesaurus:Deep_Temporal_Vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:37512 {source="MA:th"} xref: FMA:50954 xref: MA:0002240 @@ -185397,6 +186743,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0001662 name: anterior auricular vein def: "The anterior auricular veins are veins which drain the anterior aspect of the external ear. [WP,unvetted]." [Wikipedia:Anterior_auricular_veins] +subset: human_subset +subset: mouse_subset synonym: "venae auriculares anteriores" RELATED OMO:0003011 [Wikipedia:Anterior_auricular_veins] xref: EMAPA:37132 {source="MA:th"} xref: FMA:50956 @@ -185415,6 +186763,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gr id: UBERON:0001663 name: cerebral vein def: "The cerebral veins are divisible into external and internal groups according to the outer surfaces or the inner parts of the hemispheres they drain into. The external veins are the superior cerebral veins, inferior cerebral veins, and middle cerebral vein. [WP,unvetted]." [Wikipedia:Cerebral_veins] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "venae cerebri" RELATED OMO:0003011 [Wikipedia:Cerebral_veins] synonym: "venae encephali" RELATED OMO:0003011 [Wikipedia:Cerebral_veins] @@ -185443,6 +186793,8 @@ id: UBERON:0001664 name: inferior cerebral vein def: "The inferior cerebral veins, of small size, drain the under surfaces of the hemispheres. Those on the orbital surface of the frontal lobe join the superior cerebral veins, and through these open into the superior sagittal sinus. Those of the temporal lobe anastomose with the middle cerebral and basal veins, and join the cavernous, sphenoparietal, and superior petrosal sinuses. [WP,unvetted]." [Wikipedia:Inferior_cerebral_veins] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "small cerebral vein" RELATED [] xref: EMAPA:37154 {source="MA:th"} @@ -185459,6 +186811,8 @@ id: UBERON:0001665 name: triceps surae def: "The triceps surae is a pair of muscles located at the calf - the gastrocnemius and the soleus. These muscles both insert into the calcaneus, the bone of the heel of the human foot, and form the major part of the muscle of the back part of the lower leg, commonly known as the calf muscle. The triceps surae is connected to the foot through the Achilles tendon, and has 3 heads deriving from the 2 major masses of muscle. The superficial portion (the gastrocnemius) gives off 2 heads attaching to the base of the femur directly above the knee. The deep (profundis) mass of muscle (the soleus) forms the remaining head which attaches to the superior posterior area of the tibia. The triceps surae is innervated by the tibial nerve, specifically, nerve roots L5-S2. [WP,unvetted]." [Wikipedia:Triceps_surae_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "calf muscle" RELATED [Wikipedia:Triceps_surae_muscle] synonym: "gastrosoleus" RELATED [Wikipedia:Triceps_surae_muscle] @@ -185484,6 +186838,8 @@ property_value: external_ontology_notes "A set of muscles in FMA, a single organ id: UBERON:0001666 name: flexor digitorum longus def: "The Flexor digitorum longus is situated on the tibial side of the leg. At its origin it is thin and pointed, but it gradually increases in size as it descends. This muscle serves to curl the second, third, fourth, and fifth toes (flexion of phalanges II-V). [WP,unvetted]." [Wikipedia:Flexor_digitorum_longus] +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: BTO:0000466 xref: EMAPA:36248 @@ -185506,6 +186862,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/92/Gr id: UBERON:0001667 name: tibialis posterior def: "The Tibialis posterior is the most central of all the leg muscles, and is located in the posterior compartment of the leg. It is the key stabilizing muscle of the lower leg. [WP,unvetted]." [Wikipedia:Tibialis_posterior_muscle] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "ibialis posticus" RELATED [BTO:0000867] synonym: "musculus tibialis posterior" RELATED OMO:0003011 [Wikipedia:Tibialis_posterior_muscle] @@ -185533,6 +186891,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/92/Gr id: UBERON:0001668 name: cerebellar vein def: "A vein that drains the cerebellum." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "cerebellum vein" EXACT [OBOL:automatic] synonym: "epencephalon-1 vein" EXACT [OBOL:automatic] synonym: "vein of cerebellum" EXACT [OBOL:automatic] @@ -185555,6 +186915,8 @@ id: UBERON:0001669 name: superior cerebellar vein def: "The superior cerebellar veins pass partly forward and medialward, across the superior vermis, to end in the straight sinus and the internal cerebral veins, partly lateralward to the transverse and superior petrosal sinuses. [WP,unvetted]." [Wikipedia:Superior_cerebellar_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "vein of superior cerebellar hemisphere" EXACT [] xref: EMAPA:37191 {source="MA:th"} @@ -185572,6 +186934,8 @@ id: UBERON:0001670 name: inferior cerebellar vein def: "The inferior cerebellar veins are of large size, end in the transverse, superior petrosal, and occipital sinuses. [WP,unvetted]." [Wikipedia:Inferior_cerebellar_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "inferior vein of cerebellar hemisphere" EXACT [] xref: EMAPA:37153 {source="MA:th"} @@ -185588,6 +186952,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/97/Gr id: UBERON:0001671 name: temporal vein def: "Any of the veins draining the temporal region." [http://www.thefreedictionary.com/temporal+vein] +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: EMAPA:37196 {source="MA:th"} xref: FMA:51302 @@ -185609,6 +186975,8 @@ property_value: external_definition "A vein in front of the ear that drains the id: UBERON:0001672 name: anterior cerebral vein subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "ACeV" RELATED [] synonym: "rostral cerebral vein" RELATED [] @@ -185629,6 +186997,8 @@ name: central retinal vein def: "The central retinal vein (retinal vein) is a short vein that runs through the optic nerve and drains blood from the capillaries of the retina into the larger veins outside the eye. The anatomy of the veins of the orbit of the eye varies between individuals, and in some the central retinal vein drains into the superior ophthalmic vein, and in some it drains directly into the cavernous sinus. [WP,unvetted]." [Wikipedia:Central_retinal_vein] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "retinal vein" EXACT [MA:0002213] synonym: "vena centralis retinae" RELATED OMO:0003011 [Wikipedia:Central_retinal_vein] @@ -185658,6 +187028,8 @@ relationship: tributary_of UBERON:0005486 {source="FMA/obol"} ! venous dural sin id: UBERON:0001674 name: masseteric vein def: "A plexiform vein accompanying the masseteric artery that empty into the pterygoid venous plexus." [http://www.drugs.com/dict/masseteric-veins.html] +subset: human_subset +subset: mouse_subset synonym: "masseteric veins" RELATED OMO:0003004 [] xref: EMAPA:37168 {source="MA:th"} xref: FMA:52519 @@ -185675,6 +187047,8 @@ id: UBERON:0001675 name: trigeminal ganglion def: "The cranial ganglion that is associated with and extends fibers into the trigeminal nerve." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/books/NBK53171, https://github.com/obophenotype/uberon/issues/693] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -185737,6 +187111,8 @@ id: UBERON:0001676 name: occipital bone def: "The bone at the lower, posterior part of the skull." [ISBN:0-683-40008-8, MP:0005269] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "occipital complex" RELATED [http://palaeos.com/vertebrates/bones/braincase/occiput.html] @@ -185772,6 +187148,8 @@ id: UBERON:0001677 name: sphenoid bone def: "An unpaired bone situated at the base of the skull in front of the temporal bone and basilar part of the occipital bone. The sphenoid bone is one of the seven bones that articulate to form the orbit. Its shape somewhat resembles that of a butterfly or bat with its wings extended." [Wikipedia:Sphenoid_bone] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "butterfly bone" RELATED [Wikipedia:Sphenoid_bone] @@ -185816,6 +187194,8 @@ id: UBERON:0001678 name: temporal bone def: "The large, irregular bone located at the base and side of the skull; consists of three parts at birth: squamous, tympanic, and petrous." [ISBN:0-683-40008-8, MP:0005272] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "os temporale" RELATED OMO:0003011 [Wikipedia:Temporal_bone] @@ -185846,6 +187226,8 @@ id: UBERON:0001679 name: ethmoid bone def: "A bone in the skull that separates the nasal cavity from the brain. As such, it is located at the roof of the nose, between the two orbits. The cubical bone is lightweight due to a spongy construction. The ethmoid bone is one of the bones that makes up the orbit of the eye[WP]." [Wikipedia:Ethmoid_bone] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ethmoid" EXACT [FMA:52740] @@ -185886,6 +187268,8 @@ id: UBERON:0001680 name: lacrimal bone def: "The irregularly thin plate that forms part of the medial wall of the orbit behind the frontal process of the maxilla." [ISBN:0-683-40008-8, MP:0005271] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -185927,6 +187311,8 @@ id: UBERON:0001681 name: nasal bone def: "One of two small oblong bones, varying in size and form in different individuals; they are placed side by side at the middle and upper part of the face, and form, by their junction, 'the bridge' of the nose[WP]. Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish[ZFA]." [https://github.com/obophenotype/uberon/issues/265, Wikipedia:Nasal_bone, ZFIN:curator] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -185970,6 +187356,8 @@ id: UBERON:0001682 name: palatine bone def: "A paired dermal bone situated in the mid-palate that helps form the hard palate [Palaeos]." [http://palaeos.com/vertebrates/bones/dermal/palatal-palatines.html, Wikipedia:Palatine_bone] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "dermopalatine" NARROW [http://palaeos.com/vertebrates/glossary/glossaryD.html] @@ -186015,6 +187403,8 @@ id: UBERON:0001683 name: jugal bone def: "The quadrilateral bone that forms the prominence of the cheek." [ISBN:0-683-40008-8, MP:0005270] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cheek bone" EXACT [] @@ -186064,6 +187454,8 @@ name: mandible def: "A dentary bone that is the only bone in one of the lateral halves of the lower jaw skeleton." [Wikipedia:Human_mandible, Wikipedia:Mandible] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "inferior maxillary bone" EXACT [] @@ -186104,6 +187496,8 @@ id: UBERON:0001685 name: hyoid bone def: "A horseshoe shaped bone situated in the anterior midline of the neck between the chin and the thyroid cartilage. The hyoid bone provides attachment to the muscles of the floor of the mouth and the tongue above, the larynx below, and the epiglottis and pharynx behind. [WP,modified]." [Wikipedia:Hyoid_bone] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "hyoid" RELATED [Wikipedia:Hyoid_bone] @@ -186138,6 +187532,8 @@ property_value: taxon_notes "The hyoid bone is derived from the lower half of th id: UBERON:0001686 name: auditory ossicle bone def: "One of 3 small bones contained within the middle ear space and serve to transmit sounds from the air to the fluid-filled labyrinth. The absence of the auditory ossicles would constitute a moderate-to-severe hearing loss. The term 'ossicles' literally means 'tiny bones' and commonly refers to the auditory ossicles, though the term may refer to any small bone throughout the body. [WP,unvetted]." [https://github.com/obophenotype/uberon/issues/91, Wikipedia:Auditory_ossicle] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "auditory bone" EXACT [] @@ -186184,6 +187580,8 @@ id: UBERON:0001687 name: stapes bone def: "The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used[WP,unvetted]." [DOI:10.1111/j.1469-7580.2005.00441.x, Wikipedia:Stapes] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "columella" RELATED SENSU [Wikipedia:Stapes] @@ -186230,6 +187628,8 @@ id: UBERON:0001688 name: incus bone def: "The incus or anvil is the anvil-shaped small bone or ossicle in the middle ear. It connects the malleus to the stapes. It was first described by Alessandro Achillin of Bologna. The incus transmits sound vibrations from the malleus to the stapes. The incus only exists in mammals, and is derived from a reptilian upper jaw bone, the quadrate bone. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Incus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "incus" EXACT [MA:0001215] @@ -186261,6 +187661,8 @@ id: UBERON:0001689 name: malleus bone def: "The malleus or hammer is a hammer-shaped small bone or ossicle of the middle ear which connects with the incus and is attached to the inner surface of the eardrum. The word is Latin for hammer. It transmits the sound vibrations from the eardrum to the incus. The malleus is unique to mammals, and evolved from a lower jaw bone in basal amniotes called the articular, which still forms part of the jaw joint in reptiles. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Malleus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "anguloarticular - malleus" BROAD [VHOG:0000690] @@ -186293,6 +187695,8 @@ id: UBERON:0001690 name: ear def: "Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -186338,6 +187742,8 @@ id: UBERON:0001691 name: external ear def: "Part of the ear external to the tympanum (eardrum). It typically consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull[GO]." [GO:0042473, Wikipedia:External_ear] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "auricular region" BROAD [] @@ -186383,6 +187789,8 @@ property_value: homology_notes "Some species, like Amolops tormotus (Feng et al id: UBERON:0001692 name: basioccipital bone def: "One of the bones of the occiput, the part of the skull which articulates with the spine. The basioccipital is located (if present) ventral to the foramen magnum. It often rests on or articulates with the basisphenoid, as well as meeting the exoccipitals. The basioccipital usually forms most (sometimes all) of the occipital condyle(s) and the ventral margin of the foramen magnum." [http://palaeos.com/vertebrates/glossary/glossaryB.html, Wikipedia:Basilar_part_of_occipital_bone] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -186425,6 +187833,8 @@ property_value: external_definition "Chondral bone that articulates with the exo id: UBERON:0001693 name: exoccipital bone def: "Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum." [Wikipedia:Lateral_parts_of_occipital_bone, ZFIN:curator] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -186468,6 +187878,8 @@ property_value: external_definition "Endochondral bone that forms the posterior id: UBERON:0001694 name: petrous part of temporal bone def: "The petrous portion of the temporal bone or pyramid is pyramidal and is wedged in at the base of the skull between the sphenoid and occipital bones. Directed medially, forward, and a little upward, it presents for examination a base, an apex, three surfaces, and three angles, and contains, in its interior, the essential parts of the organ of hearing. The petrous portion is among the most basal elements of the skull and forms part of the endocranium.[WP,unvetted]." [Wikipedia:Petrous_part_of_the_temporal_bone] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "pars petrosa (os temporale)" EXACT [FMA:52871] synonym: "pars petrosa ossis temporalis" EXACT [] @@ -186498,6 +187910,8 @@ property_value: taxon_notes "derivative of prootic and opisthotic" xsd:string id: UBERON:0001695 name: squamous part of temporal bone def: "A bone which is fused with the temporal bone in many mammals and forms part of the cheek region articulating with quadrate and pterygoid in other vertebrates." [https://github.com/obophenotype/uberon/issues/122, MP:0004423, Wikipedia:Squama_temporalis, Wikipedia:Squamosal_bone] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "os squamosum" EXACT OMO:0003011 [] synonym: "pars squamosa (os temporale)" EXACT [] @@ -186538,6 +187952,8 @@ property_value: taxon_notes "The squamosal bone, which is homologous with the sq id: UBERON:0001697 name: orbit of skull def: "Subdivision of skeleton that is an anterolateral part of the cranium and structurally supports the eye. Includes bones formed and located in sclerotic layer of eyeball." [http://orcid.org/0000-0002-6601-2165, TAO:0001410, Wikipedia:Orbit_(anatomy)] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -186571,6 +187987,8 @@ property_value: external_ontology_notes "in FMA, this overlaps with bones such a id: UBERON:0001698 name: foramen ovale of skull def: "One of the larger of the several holes at the base of the skull that transmit nerves through the skull. The foramen ovale is situated in the anterior part of the sphenoid bone, posteriolateral to the foramen rotundum.." [Wikipedia:Foramen_ovale_(skull)] +subset: human_subset +subset: mouse_subset synonym: "foramen ovale" NARROW [AAO:0000169, FMA:53155] synonym: "foramen ovale (skull)" EXACT [FMA:53155] synonym: "foramen ovale basis cranii" EXACT [galen:ForamenOvaleBasisCranii] @@ -186597,6 +188015,8 @@ property_value: external_definition "An aperture in the great wing of the spheno id: UBERON:0001699 name: sensory root of facial nerve def: "The nervus intermedius, or intermediate nerve, is the part of the facial nerve (cranial nerve VII) located between the motor component of the facial nerve and the vestibulocochlear nerve (cranial nerve VIII). It contains the sensory and parasympathetic fibers of the facial nerve. Upon reaching the facial canal, it joins with the motor root of the facial nerve at the geniculate ganglion. [WP,unvetted]." [Wikipedia:Intermediate_nerve] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "intermediate nerve" RELATED [FMA:53410] @@ -186628,6 +188048,8 @@ name: geniculate ganglion def: "The group of sensory neuron cell bodies associated with the facial nerve (seventh cranial nerve)." [ISBN:0-683-40008-8, MP:0001082] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -186680,6 +188102,8 @@ id: UBERON:0001701 name: glossopharyngeal ganglion def: "The group of neuron cell bodies associated with the ninth cranial nerve." [MP:0001096] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "ganglion of glossopharyngeal nerve" EXACT [] @@ -186709,6 +188133,8 @@ property_value: homology_notes "These (the epibranchial placodes) are focal thic id: UBERON:0001702 name: eyelash def: "Any of the hairs that grow at the edge of the upper or lower eyelid." [MGI:anna] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "blepharis" RELATED [] @@ -186736,6 +188162,8 @@ id: UBERON:0001703 name: neurocranium def: "Subdivision of skeletal system that surrounds and protects the brain. Includes the skull base, sensory capsules and the central part of the skull roof." [PMID:11523816, TAO:MAH, Wikipedia:Neuroranium, ZFA:0001580] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -186777,6 +188205,8 @@ name: nail def: "A horn-like keratin structure covering the dorsal aspect of the terminal phalanges of fingers and toes[WP]." [https://github.com/obophenotype/uberon/issues/120, Wikipedia:Nail_(anatomy)] comment: The nails of humans and the claws are moth are highly similar. Both species have a proximal nail fold, cuticle, nail matrix, nail bed, nail plate, and hyponychium. Distinguishing features are the shape of the nail and the presence of an extended hyponychium in the mouse [PMC3579226] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "claw" NARROW SENSU [Wikipedia:Claw] @@ -186812,6 +188242,8 @@ property_value: taxon_notes "A primate's nail consists of the unguis alone; the id: UBERON:0001706 name: nasal septum def: "The nasal septum separates the left and right airways in the nose, dividing the two nostrils. It is depressed by the Depressor septi nasi muscle. [WP,unvetted]." [Wikipedia:Nasal_septum] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "septal cartilage" RELATED [Wikipedia:Nasal_septum] @@ -186851,6 +188283,8 @@ property_value: homology_notes "Whatever the common ancestor of the lamprey and id: UBERON:0001707 name: nasal cavity def: "An anatomical cavity that is part of the olfactory apparatus. This includes the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -186897,6 +188331,8 @@ property_value: taxon_notes "in humans, the cavity includes and starts at the na id: UBERON:0001708 name: jaw skeleton def: "Subdivision of skeleton which includes upper and lower jaw skeletons." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Jaw] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -186944,6 +188380,8 @@ id: UBERON:0001709 name: upper jaw region def: "Subdivision of head that consists of the upper jaw skeletal elements plus associated soft tissue (skin, lips, muscle)[cjm]." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Upper_jaw] comment: See notes for jaw w.r.t skeletal element vs subdivision of head. +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "alveolodental arch of bimaxilla" RELATED [FMA:59399] @@ -186983,6 +188421,8 @@ name: lower jaw region def: "Subdivision of head that consists of the lower jaw skeletal elements plus associated soft tissue (skin, lips, muscle)[cjm]." [Wikipedia:Lower_jaw] comment: See notes for jaw w.r.t skeletal element vs subdivision of head subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "lower part of mouth" RELATED [] @@ -187016,6 +188456,8 @@ property_value: homology_notes "Subsequent vertebrate evolution has also involve id: UBERON:0001711 name: eyelid def: "A fold of skin that covers and protects part of the eyeball. Examples: upper eyelid, lower eyelid, nictitating membrane." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "blephara" RELATED OMO:0003004 [] @@ -187054,6 +188496,8 @@ property_value: taxon_notes "In humans the upper and lower eyelid consists of th [Term] id: UBERON:0001712 name: upper eyelid +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "palpebra superior" EXACT OMO:0003011 [FMA:54439, FMA:TA] @@ -187074,6 +188518,8 @@ property_value: homology_notes "A tetrapod's eye usually has one or more eyelids [Term] id: UBERON:0001713 name: lower eyelid +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "inferior eyelid" EXACT [] @@ -187101,6 +188547,8 @@ alt_id: UBERON:0026601 def: "The groups of nerve cell bodies associated with the twelve cranial nerves." [ISBN:0-683-40008-8, MGI:csmith, MP:0001081, PMID:9362461] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -187144,6 +188592,8 @@ id: UBERON:0001715 name: oculomotor nuclear complex def: "Nuclear complex containing subnuclei that give rise to the axons of the occulomotor nerve, both motor and parasympathetic fibers, situated at the midline at the level of the superior colliculus in the midbrain tegmentum (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533-534)." [BIRNLEX:1240] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -187204,6 +188654,8 @@ property_value: external_definition "The nucleus of the oculomotor nerve (crania id: UBERON:0001716 name: secondary palate def: "The part of the palate formed from the fusion of the two palatine shelves, extensions of the maxillary prominences." [http://www.indiana.edu/~anat550/hnanim/face/face.html, Wikipedia:Secondary_palate] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "definitive palate" EXACT [EMAPA:18948] @@ -187246,6 +188698,8 @@ id: UBERON:0001717 name: spinal nucleus of trigeminal nerve def: "Nucleus extending from the upper spinal cord through the pontine tegmentum that receives sensory inputs from the trigeminal nerve. It is continuous caudally with the dorsal gray matter of the spinal cord." [NLX:12995] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nucleus spinalis nervi trigemini" RELATED OMO:0003011 [Wikipedia:Spinal_trigeminal_nucleus] synonym: "spinal nucleus of cranial nerve v" EXACT [] @@ -187282,6 +188736,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gr id: UBERON:0001718 name: mesencephalic nucleus of trigeminal nerve def: "Elongated nucleus located in the midbrain tegmentum that receives proprioceptive input from both teh extraocular and the masticatory muscles. Contrary to the general rule, the cell bodies that give rise to these sensory fibers are located within the mesencephalic nucleus rather than in a peripheral ganglion. Some of the sensory fibers in the mesencephalic root give off collaterals to the trigeminal motor nucleus, thereby providing the anatomic basis for the monosynaptic jaw reflex. (Heimer, L. The Human Brain and Spinal Cord, 2nd ed. 1996, page 248)." [BIRNLEX:1010] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -187334,6 +188790,8 @@ property_value: external_ontology_notes "part of midbrain tegmentum in NIF and M id: UBERON:0001719 name: nucleus ambiguus def: "A region of histologically disparate cells located just dorsal to the inferior olivary nucleus in the lateral portion of the upper medulla. It receives upper motor neuron innervation directly via the corticobulbar tract This nucleus gives rise to the efferent motor fibers of the vagus nerve terminating in the laryngeal and pharyngeal muscles, as well as to the efferent motor fibers of the glossopharyngeal nerve (CN IX) terminating in the stylopharyngeus. [WP,unvetted]." [Wikipedia:Nucleus_ambiguus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "Amb" BROAD OMO:0003000 [BIRNLEX:2650, NIFSTD:NeuroNames_abbrevSource] synonym: "ambiguous nucleus" RELATED [NeuroNames:765] @@ -187377,6 +188835,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/93/Gr id: UBERON:0001720 name: cochlear nucleus def: "Any of the nuclei of the cochlear nuclear complex." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -187409,6 +188869,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Gr id: UBERON:0001721 name: inferior vestibular nucleus def: "The inferior vestibular nucleus is the vestibular nucleus which lies near the fourth ventricle. [WP,unvetted]." [Wikipedia:Inferior_vestibular_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "descending vestibular nucleus" EXACT [FMA:54608] synonym: "nucleus vestibularis inferior" RELATED OMO:0003011 [Wikipedia:Inferior_vestibular_nucleus] @@ -187440,6 +188902,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Gr id: UBERON:0001722 name: medial vestibular nucleus def: "The medial vestibular nucleus is one of the vestibular nuclei. It is located in the medulla oblongata. Lateral vestibulo-spinal tract (lateral vestibular nucleus 'Deiters')- via ventrolateral medulla and spinal cord to ventral funiculus (lumbo-sacral segments). Ipsilaterally for posture Medial vestibulo-spinal tract (medial, lateral, inferior, vestibular nuclei), bilateral projection via descending medial longitudinal fasciculus to cervical segments. DESCENDING MLF. Bilaterally for head/neck/eye movements [WP,unvetted]." [Wikipedia:Medial_vestibular_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "chief vestibular nucleus" EXACT [FMA:54611] synonym: "dorsal vestibular nucleus" EXACT [FMA:54611] @@ -187481,6 +188945,8 @@ id: UBERON:0001723 name: tongue def: "A muscular organ in the floor of the mouth." [FEED:rd, https://github.com/obophenotype/uberon/issues/256] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -187535,6 +189001,8 @@ property_value: taxon_notes "Many species of fish have small folds at the base o id: UBERON:0001724 name: sphenoidal sinus def: "One of the paired paranasal sinuses, located in the body of the sphenoid bone and communicating with the highest meatus of the nasal cavity on the same side[MESH]. The sphenoidal sinuses (or sphenoid) contained within the body of the sphenoid vary in size and shape; owing to the lateral displacement of the intervening septum they are rarely symmetrical. The following are their average measurements: vertical height, 2.2 cm. ; transverse breadth, 2 cm. ; antero-posterior depth, 2.2 cm. [WP,unvetted]." [MESH:A04.531.621.827, Wikipedia:Sphenoidal_sinus] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "sinus sphenoidalis" RELATED OMO:0003011 [Wikipedia:Sphenoidal_sinus] @@ -187559,6 +189027,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Gr id: UBERON:0001725 name: cranial synchondrosis def: "The cartilaginous joints of the skull; these include sphenoethmoidal synchondrosis, sphenooccipital synchondrosis, sphenopetrosal synchondrosis, petrooccipital synchondrosis, anterior intraoccipital synchondrosis and posterior intraoccipital synchondrosis." [http://www.medilexicon.com/medicaldictionary.php?t=87514] +subset: human_subset +subset: mouse_subset xref: EMAPA:35264 xref: FMA:54816 xref: MA:0001502 @@ -187571,6 +189041,8 @@ relationship: part_of UBERON:0003129 ! skull [Term] id: UBERON:0001726 name: papilla of tongue +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lingual papilla" EXACT [] synonym: "tongue papilla" EXACT [] @@ -187590,6 +189062,8 @@ relationship: part_of UBERON:0009471 {source="FMA-modified"} ! dorsum of tongue id: UBERON:0001727 name: taste bud def: "A specialized receptor organ that is a collection of cells spanning the gustatory epithelium." [http://periowiki.wikispot.org/Taste_bud_histology] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -187637,6 +189111,8 @@ property_value: taxon_notes "In humans, saste buds may be found on the tongue, s id: UBERON:0001728 name: nasopharynx def: "The section of the pharynx that lies above the soft palate." [MGI:cwg, MP:0002251] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "epipharynx" RELATED [Wikipedia:Pharynx] @@ -187674,6 +189150,8 @@ id: UBERON:0001729 name: oropharynx def: "The portion of the pharynx that lies between the soft palate and the upper edge of the epiglottis." [MGI:cwg, MP:0002252] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "mesopharynx" RELATED [Wikipedia:Pharynx] @@ -187711,6 +189189,8 @@ property_value: has_relational_adjective "oropharyngeal" xsd:string [Term] id: UBERON:0001730 name: extrinsic ligament of larynx +subset: human_subset +subset: mouse_subset synonym: "laryngeal extrinsic ligament" EXACT [] xref: EMAPA:37627 {source="MA:th"} xref: FMA:54921 @@ -187722,6 +189202,8 @@ is_a: UBERON:0001743 ! ligament of larynx id: UBERON:0001731 name: cavity of pharynx def: "An anatomical space that is enclosed by a pharynx." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cavitas pharyngealis" RELATED OMO:0003011 [] synonym: "cavitas pharyngis" RELATED [BTO:0002097] synonym: "lumen of pharynx" EXACT [] @@ -187747,6 +189229,8 @@ property_value: taxon_notes "See notes for pharynx - as a grouping class this is id: UBERON:0001732 name: pharyngeal tonsil def: "The lymph tissue in the roof and posterior wall of the nasopharynx." [MGI:cwg, MP:0002384] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "adenoid" EXACT [] @@ -187775,6 +189259,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/be/Gr id: UBERON:0001733 name: soft palate def: "The muscular, non-bony arch-shaped posterior portion of the palate extending from the posterior edge of the hard palate." [GO:0060023, http://www.feedexp.org, UBERON:cjm, Wikipedia:Soft_palate] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "muscular palate" RELATED [Wikipedia:Soft_palate] @@ -187808,6 +189294,7 @@ name: palatine uvula def: "Conic projection from the posterior edge of the middle of the soft palate, composed of connective tissue containing a number of racemose glands, and some muscular fibers." [Wikipedia:Palatine_uvula] comment: seeAlso - bifid uvula and cleft palate subset: efo_slim +subset: human_subset subset: pheno_slim subset: uberon_slim synonym: "palatine uvula" EXACT [] @@ -187837,6 +189324,8 @@ property_value: taxon_notes "In a study of eight mammals a small underdeveloped id: UBERON:0001735 name: tonsillar ring def: "The circular lymphoid tissue formed by the lingual, pharyngeal, and faucial tonsils." [MGI:cwg, MP:0002379] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "anulus lymphoideus pharyngis" EXACT OMO:0003011 [FMA:55070, FMA:TA] @@ -187862,6 +189351,8 @@ name: submandibular gland def: "Either of the paired compound tubuloalveolar (aka tubuloacinar) major salivary glands composed of both serous and mucous secretory cells and situated beneath the mandible." [DOI:10.1111/j.1432-0436.2006.00088.x, MGI:anna] comment: lobular, sexually dimorphic in mouse subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "glandula submandibularis" RELATED OMO:0003011 [Wikipedia:Submandibular_gland] @@ -187905,6 +189396,8 @@ id: UBERON:0001737 name: larynx def: "A continuation of the pharynx that is involved in breathing, sound production, and protecting the trachea against food aspiration." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Larynx] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: AAO:0000268 @@ -187944,6 +189437,8 @@ property_value: homology_notes "(In anura) a dorsal pair of arytenoid cartilages id: UBERON:0001738 name: thyroid cartilage def: "The largest of the laryngeal cartilages." [ISBN:0-397-51047-0, MGI:cwg, MP:0002260] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cartilago thyroidea" RELATED OMO:0003011 [Wikipedia:Thyroid_cartilage] @@ -187976,6 +189471,8 @@ property_value: homology_notes "[In anura] a dorsal pair of arytenoid cartilages id: UBERON:0001739 name: laryngeal cartilage def: "The cartilaginous structures that support the larynx." [MP:0002256] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cartilage of larynx" EXACT [FMA:55108] synonym: "cartilagines laryngeales" EXACT OMO:0003004 [] @@ -188010,6 +189507,8 @@ property_value: homology_notes "(In anura) a dorsal pair of arytenoid cartilages id: UBERON:0001740 name: arytenoid cartilage def: "The paired triangular laryngeal cartilages located postlaterally at the level of the thyroid cartilage." [ISBN:0-397-51047-0, MGI:cwg, MP:0002257] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "arytenoid" EXACT [EMAPA:18695] @@ -188041,6 +189540,8 @@ property_value: external_definition "Paired, anteroposteriorly elongated cartila id: UBERON:0001741 name: corniculate cartilage def: "The corniculate cartilages (cartilages of Santorini) are two small conical nodules consisting of yellow elastic cartilage, which articulate with the summits of the arytenoid cartilages and serve to prolong them posteriorly and medially. They are situated in the posterior parts of the aryepiglottic folds of mucous membrane, and are sometimes fused with the arytenoid cartilages. [WP,unvetted]." [Wikipedia:Corniculate_cartilages] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "cartilage of Santorini" EXACT [] synonym: "cartilagines corniculata" EXACT OMO:0003011 [Wikipedia:Corniculate_cartilage] @@ -188065,6 +189566,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l id: UBERON:0001742 name: epiglottic cartilage def: "The most superior of the laryngeal cartilages, which is found at the root of the tongue and folds back over the entrance to the larynx during swallowing." [MP:0002259] +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: EMAPA:37522 {source="MA:th"} xref: FMA:55112 @@ -188087,6 +189590,8 @@ property_value: external_ontology_notes "laryngeal cartilage in MP" xsd:string { id: UBERON:0001743 name: ligament of larynx def: "A ligament that is part of a larynx and connexts the cartilages of the larynx." [http://education.yahoo.com/reference/gray/subjects/subject/236] +subset: human_subset +subset: mouse_subset synonym: "laryngeal ligament" EXACT [] synonym: "larynx ligament" EXACT [MA:0001755] xref: EMAPA:37626 {source="MA:th"} @@ -188105,6 +189610,8 @@ relationship: part_of UBERON:0001737 ! larynx id: UBERON:0001744 name: lymphoid tissue def: "Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]." [Wikipedia:Lymphoid_tissue] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "lymphatic tissue" EXACT [] @@ -188131,6 +189638,8 @@ relationship: part_of UBERON:0002465 ! lymphoid system id: UBERON:0001745 name: secondary nodular lymphoid tissue def: "A lymphoid follicle that contains a germinal center." [CL:tm] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "peripheral lymphoid tissue" EXACT [] synonym: "secondary lymphoid nodule" EXACT [] @@ -188148,6 +189657,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2f/Ke [Term] id: UBERON:0001746 name: capsule of thyroid gland +subset: human_subset +subset: mouse_subset synonym: "capsula fibrosa glandulae thyroideae" EXACT OMO:0003011 [FMA:55513, FMA:TA] synonym: "fibrous capsule of thyroid gland" EXACT [FMA:55513] synonym: "thyroid capsule" EXACT [] @@ -188168,6 +189679,8 @@ relationship: part_of UBERON:0002046 ! thyroid gland id: UBERON:0001747 name: parenchyma of thyroid gland def: "A parenchyma that is part of a thyroid follicle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "parenchyma glandulae thyroideae" RELATED [BTO:0004579] synonym: "parenchyma of thyroid" EXACT [OBOL:accepted] synonym: "parenchyma of thyroid follicle" EXACT [OBOL:automatic] @@ -188194,6 +189707,8 @@ relationship: part_of UBERON:0002046 ! thyroid gland id: UBERON:0001748 name: capsule of parathyroid gland def: "The dense and irregular connective tissue capsule surrounding a parathyroid gland." [MGI:anna] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "parathyroid gland capsule" EXACT [] xref: EMAPA:35663 @@ -188212,6 +189727,8 @@ relationship: part_of UBERON:0001132 {source="MA"} ! parathyroid gland id: UBERON:0001749 name: parenchyma of parathyroid gland def: "A parenchyma that is part of a parathyroid gland [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "parathyroid gland parenchyma" EXACT [] synonym: "parathyroid parenchyma" EXACT [OBOL:automatic] synonym: "parenchyma of parathyroid" EXACT [OBOL:automatic] @@ -188229,6 +189746,8 @@ relationship: part_of UBERON:0001132 ! parathyroid gland id: UBERON:0001750 name: lacrimal apparatus def: "A network of orbital structures of the eye that secrete and drain tears from the surface of the eyeball into the nasal cavity; these parts include the lacrimal glands, lacrimal lake, lacrimal ducts, lacrimal canals, lacrimal sacs, nasolacrimal ducts, and lacrimal puncta." [MGI:anna] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "apparatus lacrimalis" EXACT OMO:0003011 [Wikipedia:Lacrimal_apparatus] @@ -188261,6 +189780,8 @@ id: UBERON:0001751 name: dentine def: "Collagen-rich odontogenic tissue characteristic of teeth and tooth-like skeletal elements (e.g., odontodes); mature dentine is mineralized and develops from predentine tissue; often (but not always) tubular and acellular." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000069] comment: . +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -188297,6 +189818,8 @@ property_value: taxon_notes "Dentine is found in the fossil record as early as t id: UBERON:0001752 name: enamel def: "A dentine-like hypermineralized substance that covers the tooth tip. Enamel's primary mineral is hydroxylapatite, which is a crystalline calcium phosphate. Unlike dentin and bone, enamel does not contain collagen. Instead, it has two unique classes of proteins called amelogenins and enamelins[WP]." [Wikipedia:Enamel_organ, ZFIN:curator] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -188333,6 +189856,8 @@ property_value: external_ontology_notes "part_of tooth enamel organ in MA" xsd:s id: UBERON:0001753 name: cementum def: "Odontoid tissue that is deposited by cementoblasts onto dentine tissue and functions to attach teeth, odontodes and other odontogenic derivatives to bone tissue and the integument." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000062] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bone of attachment" RELATED [VSAO:0000062] synonym: "cement" EXACT [FMA:55630] @@ -188362,6 +189887,8 @@ property_value: taxon_notes "Cementum, the supporting tissue that anchors mammal id: UBERON:0001754 name: dental pulp def: "The part in the center of a tooth made up of living soft tissue and cells called odontoblasts[WP]." [Wikipedia:Dental_pulp] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -188395,6 +189922,8 @@ property_value: homology_notes "The oral cavity of vertebrates is generally thou id: UBERON:0001755 name: distal part of styloid process of temporal bone def: "A segment in the hyoidean arch between the epihyal and tympanohyal[biology-online]. The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms[ZFA]." [http://www.biology-online.org/dictionary/Stylohyal] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "distal part of styloid process" EXACT [FMA:56472] synonym: "stylohyal" BROAD [FMA:56472] @@ -188411,6 +189940,8 @@ property_value: editor_note "TODO - check" xsd:string id: UBERON:0001756 name: middle ear def: "The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window)[GO]." [GO:0042474, Wikipedia:Middle_ear] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "auris media" RELATED OMO:0003011 [BTO:0002099, Wikipedia:Middle_ear] @@ -188445,6 +189976,8 @@ property_value: homology_notes "The tympanic cavity and auditory tube of an amni id: UBERON:0001757 name: pinna def: "The part of the ear that projects from the head, connecting to the external acoustic meatus." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Pinna_(anatomy)] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "auricle" EXACT [] @@ -188480,6 +190013,8 @@ property_value: taxon_notes "In various species, the pinna can also signal mood id: UBERON:0001758 name: periodontium def: "The tissues that invest or help to invest and support the teeth, including the periodontal ligament, gingivae, cementum, and alveolar and supporting bone[BTO]." [BTO:0001021, Wikipedia:Periodontium] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "paradentium" RELATED [MESH:A14.254.646] synonym: "periodontal ligament" RELATED INCONSISTENT [FMA:56665] @@ -188505,6 +190040,8 @@ name: vagus nerve def: "Cranial nerve that branches into the lateral (to body sense organs) and the intestino-accessorial (to the skin, muscles of shoulder, hyoid, larynx, gut, lungs, and heart)." [ISBN:0471209627, Wikipedia:Vagus_nerve] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -188563,6 +190100,8 @@ property_value: homology_notes "We conclude this section by listing some of the id: UBERON:0001760 name: frontal sinus def: "The frontal sinus occupies the dorsal part of the skull medial to the orbit. It overlaps cranial and nasal cavities and is often referred to as the conchofrontal sinus." [MURDOCH:753, Wikipedia:Frontal_sinus] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cavity of frontal bone" EXACT [FMA:57417] @@ -188583,6 +190122,8 @@ property_value: taxon_notes "A unique feature in the horse is that the frontal s id: UBERON:0001761 name: future foramen cecum def: "A thickened and indented region in the midline in the floor of the rostral part of the pharyngeal region of the foregut, located between the second and third branchial arches that is the first indication of the thyroid primordium. [Kaufman_MH_and_Bard_JBL, The_anatomical_basis_of_mouse_development_(1999)_San_Diego:_Academic_Press, p.132]." [ISBN:0124020607, VHOG:0000826] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "foramen caecum" BROAD [MA:0000725] synonym: "foramen cecum" BROAD [] @@ -188601,6 +190142,8 @@ relationship: part_of UBERON:0003091 ! thyroid primordium id: UBERON:0001762 name: turbinate bone def: "The small curved bones that extends horizontally along the lateral wall of the nasal passage." [ISBN:0-683-40008-8, MP:0002244] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "concha" RELATED [EMAPA:25093] @@ -188639,6 +190182,8 @@ property_value: taxon_notes "Turbinals are only ossified in birds and derived sy id: UBERON:0001763 name: odontogenic papilla def: "A condensation of odontoblasts that forms the part of a tooth germ that gives rise to dentin and pulp in the mature tooth. It lies below a cellular aggregation known as the enamel organ." [Wikipedia:Dental_papilla, ZFA:0005140] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "dental papilla" RELATED [MA:0001598] @@ -188680,6 +190225,8 @@ property_value: homology_notes "Teeth and tooth-like structures, together named id: UBERON:0001764 name: maxillary sinus def: "One of the paired paranasal sinuses, located in the body of the maxilla, communicating with the middle meatus of the nasal cavity." [MESH:A04.531.621.578, Wikipedia:Maxillary_sinus] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "antrum of Highmore" EXACT [] @@ -188706,6 +190253,8 @@ id: UBERON:0001765 name: mammary duct def: "Epithelial tube that transports milk[GO]." [GO:0060603, Wikipedia:Lactiferous_duct] comment: This structure regresses in most males +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ductus lactiferi" RELATED OMO:0003011 [BTO:0002845, Wikipedia:Lactiferous_duct] @@ -188740,6 +190289,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Il id: UBERON:0001766 name: anterior chamber of eyeball def: "The space in the eye, filled with aqueous humor, and bounded anteriorly by the cornea and a small portion of the sclera and posteriorly by a small portion of the ciliary body, the iris, and part of the crystalline lens." [MESH:A09.371.060.067, MP:0005205] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior chamber" EXACT [HP:0000593, MP:0010709] synonym: "anterior chamber of eye" EXACT [] @@ -188774,6 +190325,8 @@ id: UBERON:0001767 name: posterior chamber of eyeball def: "The ring-like space, filled with aqueous humor, between the iris/pupil anteriorly and the lens and ciliary body posteriorly." [ISBN:0-683-40008-8, MP:0005299] comment: The posterior chamber should not be confused with vitreous chamber. +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "c. posterior bulbi" RELATED OMO:0003011 [Wikipedia:Posterior_chamber_of_eyeball] synonym: "camera oculi posterior" RELATED [BTO:0002086] @@ -188797,6 +190350,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Gr id: UBERON:0001768 name: uvea def: "The pigmented middle of the three concentric layers that make up an eye, consisting of the iris, ciliary body and choroid[WP,edited]." [MP:0005197, Wikipedia:Uvea] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "pars iridica retinae" RELATED [Wikipedia:Uvea] @@ -188835,6 +190390,8 @@ name: iris def: "The adjustable membrane, composed of the stroma and pigmented epithelium, located just in front of the crystalline lens within the eye." [ISBN:0-683-40008-8, MP:0001322] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -188874,6 +190431,8 @@ property_value: taxon_notes "The avian iris and ciliary body undergoes a transit id: UBERON:0001770 name: lacrimal canaliculus def: "The part of the lacrimal duct that connects the lacrimal punctum to the lacrimal sac." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "canaliculus lacrimalis" RELATED OMO:0003011 [Wikipedia:Lacrimal_canaliculi] synonym: "lacrimal duct" RELATED [https://www.bartleby.com/lit-hub/anatomy-of-the-human-body/fig-896/, ISBN:1587341026] @@ -188894,6 +190453,8 @@ relationship: part_of UBERON:0001850 {source="FMA"} ! lacrimal drainage system id: UBERON:0001771 name: pupil def: "The central circular aperture of the iris through which light rays enter the eye." [ISBN:0-683-40008-8, MP:0001317] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -188924,6 +190485,8 @@ name: corneal epithelium def: "The smooth stratified squamous epithelium that covers the outer surface of the cornea." [MESH:A09.371.060.217.325, MGI:smb, MP:0006000] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -188979,6 +190542,8 @@ name: sclera def: "Opaque fibrous outer layer of the eyeball[ZFA,Kardong,WP]." [Wikipedia:Sclera, ZFIN:ZDB-PUB-050701-15] comment: Disease notes: implicated in rheumatoid arthritis. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -189020,6 +190585,8 @@ property_value: taxon_notes "in fish, reptiles and monotremes the connective tis id: UBERON:0001774 name: skeletal muscle of trunk def: "A skeletal muscle organ that is part of the trunk region." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "body musculature" EXACT [ZFA:0000473] @@ -189051,6 +190618,8 @@ id: UBERON:0001775 name: ciliary body def: "The thickened portion of the vascular tunic, which lies between the choroid and the iris, composed of ciliary muscle and ciliary processes." [ISBN:0-683-40008-8, MP:0005099, Wikipedia:Ciliary_body] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -189090,6 +190659,8 @@ id: UBERON:0001776 name: optic choroid def: "Vascular layer containing connective tissue, of the eye lying between the retina and the sclera. The choroid provides oxygen and nourishment to the outer layers of the retina. Along with the ciliary body and iris, the choroid forms the uveal tract[WP]." [Wikipedia:Choroid] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -189136,6 +190707,8 @@ id: UBERON:0001777 name: substantia propria of cornea def: "The lamellated connective tissue of the cornea between the Bowman and Descemet membranes." [ISBN:0-683-40008-8, MESH:A09.371.060.217.228, MP:0005300] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -189175,6 +190748,8 @@ id: UBERON:0001778 name: ciliary epithelium def: "A double layer covering the ciliary body that produces aqueous humor." [Wikipedia:Ciliary_body#Ciliary_epithelium] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ciliary body epithelium" EXACT [FMA:58464] synonym: "epithelium of ciliary body" EXACT [FMA:58464] synonym: "ocular ciliary epithelium" EXACT [] @@ -189200,6 +190775,8 @@ relationship: produces UBERON:0001796 {source="Wikipedia"} ! aqueous humor of ey id: UBERON:0001779 name: iris stroma def: "The delicate vascular connective tissue that lies between the anterior surface of the iris and the pars iridica retinae." [http://www.drugs.com/dict/stroma-of-iris.html, Wikipedia:Iris_stroma] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -189224,6 +190801,8 @@ id: UBERON:0001780 name: spinal nerve def: "The any of the paired peripheral nerves formed by the union of the dorsal and ventral spinal roots from each spinal cord segment[MP,modified]." [MESH:A08.800.800.720, MP:0001077] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "backbone nerve" EXACT [OBOL:automatic] @@ -189267,6 +190846,8 @@ property_value: external_definition "Any of the paired nerves emerging from the id: UBERON:0001781 name: layer of retina def: "Any of the layers that make up the retina[MP]." [MP:0003727] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "retina layer" EXACT [] @@ -189292,6 +190873,8 @@ id: UBERON:0001782 name: pigmented layer of retina def: "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup[ZFA]. the pigmented cell layer just outside the neurosensory retina that nourishes retinal visual cells, and is firmly attached to the underlying choroid and overlying retinal visual cells[WP]." [Wikipedia:Retinal_pigment_epithelium, ZFIN:curator] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -189351,6 +190934,8 @@ name: optic disc def: "The optic disc or optic nerve head is the location where ganglion cell axons exit the eye to form the optic nerve. There are no light sensitive rods or cones to respond to a light stimulus at this point. This causes a break in the visual field called 'the blind spot' or the 'physiological blind spot'. The optic nerve head in a normal human eye carries from 1 to 1.2 million neurons from the eye towards the brain. [WP,unvetted]." [Wikipedia:Optic_disc] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "optic disk" EXACT [MESH:A08.800.800.120.680.660] @@ -189396,6 +190981,8 @@ id: UBERON:0001785 name: cranial nerve def: "Cranial nerves are nerves that emerge directly from the brain, in contrast to spinal nerves, which emerge from segments of the spinal cord." [Wikipedia:Cranial_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -189446,6 +191033,8 @@ property_value: homology_notes "We conclude this section by listing some of the id: UBERON:0001786 name: fovea centralis def: "A depression in the inner retinal surface within the macula lutea, the photoreceptor layer of which is entirely cones and which is specialized for maximum visual acuity." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Fovea] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "centre of fovea" RELATED [BIRNLEX:2543] @@ -189484,6 +191073,8 @@ property_value: taxon_notes "The fovea is also a pit in the surface of the retin id: UBERON:0001787 name: photoreceptor layer of retina def: "The layer within the retina where the photoreceptor cell receptor segments reside." [Wikipedia:Layer_of_rods_and_cones, ZFA:0000143] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -189515,6 +191106,8 @@ property_value: homology_notes "(...) an essentially similar sequence of events id: UBERON:0001788 name: outer limiting layer of retina def: "The row of jucntional complexes between the plasma membranes of rod segments and the Muller glia cells; this barrier separates the layer of inner and outer segments of the rods and cones from the outer nuclear layer and forms a blood-retina barrier[MP]." [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109, MP:0010236] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "blood retina barrier" RELATED [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109] @@ -189548,6 +191141,8 @@ id: UBERON:0001789 name: outer nuclear layer of retina def: "The layer within the retina where the photoreceptor cell bodies reside." [ZFA:0001464] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "external nuclear layer" RELATED [BTO:0005600] @@ -189586,6 +191181,8 @@ property_value: homology_notes "(...) an essentially similar sequence of events id: UBERON:0001790 name: outer plexiform layer of retina def: "The layer within the retina where the bipolar cells synapse with the photoreceptor cells[ZFA]. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells[GO]." [ZFA:0001330] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "external plexiform layer" BROAD [BTO:0003174] @@ -189624,6 +191221,8 @@ name: inner nuclear layer of retina def: "Cytoarchitectural layer of retina containing closely packed cell bodies, the majority of which are bipolar cells (adapted from Wikipedia)." [NLX:93816] comment: AO notes NLXANAT:1005031 appears to be retired subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "INL" NARROW [] @@ -189667,6 +191266,8 @@ id: UBERON:0001792 name: ganglionic layer of retina def: "Cytoarchitectural layer of retina that contains somata of retinal ganglion cells, bounded by the stratum opticum and the inner plexiform layer." [NLX:36500] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -189712,6 +191313,8 @@ id: UBERON:0001793 name: nerve fiber layer of retina alt_id: UBERON:0005888 def: "Layer of the retina formed by expansion of the fibers of the optic nerve." [ISBN:0-914294-08-3, MGI:smb] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "layer of nerve fibers of retina" EXACT [] @@ -189748,6 +191351,8 @@ property_value: homology_notes "(...) an essentially similar sequence of events id: UBERON:0001794 name: inner limiting layer of retina def: "The row of fused Muller cell processes and astrocytes that separates the retinal nerve fiber layer from the vitreous[MP]." [MP:0010235] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "ILM" BROAD OMO:0003000 [ZFA:0001029] @@ -189783,6 +191388,8 @@ property_value: external_definition "Membrane on the apical surface of the retin id: UBERON:0001795 name: inner plexiform layer of retina def: "Cytoarchitectural layer of the retina that is made up of a dense reticulum of fibrils formed by interlaced dendrites of retinal ganglion cells and cells of the inner nuclear layer (adapted from Wikipedia)." [NLX:20558] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "inner plexiform layer" RELATED [BTO:0003175] @@ -189831,6 +191438,8 @@ property_value: homology_notes "(...) an essentially similar sequence of events id: UBERON:0001796 name: aqueous humor of eyeball def: "A thick watery refractive medium that fills the space between the lens and the cornea[WP]." [Wikipedia:Aqueous_humor] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -189865,6 +191474,8 @@ property_value: homology_notes "(...) we reach the inescapable conclusion that t id: UBERON:0001797 name: vitreous humor def: "A transparent, semigelatinous substance that fills the cavity behind the crystalline lens of the eye and in front of the retina." [MP:0002699] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -189900,6 +191511,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1e/Sc id: UBERON:0001798 name: vitreous body def: "Gelatinous mucoid tissue that is composed of vitreous humor and fills the cavity behind the crystalline lens of the eye and in front of the retina[MP,modified]." [MP:0002699] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: CALOHA:TS-0308 @@ -189923,6 +191536,8 @@ property_value: editor_note "distinciton between body and humor requires more wo id: UBERON:0001799 name: vitreous chamber of eyeball def: "The chamber in the eyeball enclosing the vitreous humor, bounded anteriorly by the lens and ciliary body and posteriorly by the posterior wall of the eyeball[BTO,modified]." [BTO:0002087] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "camera postrema" EXACT [FMA:58848] synonym: "camera postrema bulbi oculi" EXACT OMO:0003011 [FMA:58848, FMA:TA] @@ -189949,6 +191564,8 @@ id: UBERON:0001800 name: sensory ganglion def: "The clusters of neurons in the somatic peripheral nervous system which contain the cell bodies of sensory nerve axons, interneurons and non-neuronal supporting cells." [MP:0000960] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ganglion sensorium" EXACT OMO:0003011 [] xref: AEO:0001000 @@ -189970,6 +191587,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0001801 name: anterior segment of eyeball def: "Any of the parts of the eye that lie in front of, or ventral to, the lens (inclusive)." [ISBN:0-683-40008-8, MESH:A09.371.060, MP:0005193] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "anterior eye segment" EXACT [] @@ -190001,6 +191620,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/ba/Ca id: UBERON:0001802 name: posterior segment of eyeball def: "Any of the parts of the eye that lie in back of, or dorsal to, the lens (but not inclusive)." [ISBN:0-683-40008-8, MP:0005195] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "eye posterior segment" EXACT [] @@ -190030,6 +191651,8 @@ id: UBERON:0001803 name: epithelium of lens def: "A layer of epithelial cells that is part of the eye." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "epithelial tissue of eye lens" EXACT [OBOL:automatic] @@ -190063,6 +191686,8 @@ property_value: curator_notes "this class is the superclass of the anterior epit id: UBERON:0001804 name: capsule of lens def: "The elastic, clear, membrane-like structure, that is outer most layer of the lens." [MGI:smb, MP:0003236, PMID:15483628] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -190100,6 +191725,8 @@ id: UBERON:0001805 name: autonomic ganglion def: "Ganglion that has dendrites that form a junction between autonomic nerves originating from the central nervous system and autonomic nerves innervating their target organs in the periphery. There are two subtypes, sympathetic ganglion and parasympathetic ganglion." [Wikipedia:Autonomic_ganglion] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "autonomic nervous system ganglion" EXACT [OBOL:automatic] synonym: "ganglion autonomicum" RELATED OMO:0003011 [Wikipedia:Autonomic_ganglion] @@ -190128,6 +191755,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gr id: UBERON:0001806 name: sympathetic ganglion def: "A ganglion of the sympathetic nervous system. Examples: paravertebral and the prevertebral ganglia, which include the sympathetic chain ganglia, the superior, middle, and inferior cervical ganglia, and the aorticorenal, celiac, and stellate ganglia." [http://orcid.org/0000-0002-6601-2165, MP:0001008] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ganglion of sympathetic nervous system" EXACT [OBOL:automatic] @@ -190164,6 +191793,8 @@ name: paravertebral ganglion alt_id: UBERON:0005466 def: "Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord." [Wikipedia:Paravertebral_ganglion, ZFIN:curator] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "ganglia of sympathetic trunk" RELATED [Wikipedia:Paravertebral_ganglia] @@ -190197,6 +191828,8 @@ id: UBERON:0001808 name: parasympathetic ganglion def: "Ganglion containing neurons that receive innervation from parasympathetic neurons in the central nervous system and subserves parasympathetic functions through innervation of smooth muscle, cardiac muscle and glands." [NLXANAT:100303] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ganglion parasympathicum" RELATED OMO:0003011 [BTO:0001256, Wikipedia:Parasympathetic_ganglion] @@ -190225,6 +191858,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f7/Gr [Term] id: UBERON:0001809 name: enteric ganglion +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "intramural ganglion" EXACT [FMA:5896] xref: EMAPA:35312 @@ -190244,6 +191879,8 @@ id: UBERON:0001810 name: nerve plexus def: "Anatomical junction where subdivisions of two or more neural trees interconnect with one another to form a network through which nerve fibers of the constituent nerve trees become regrouped; together with other nerve plexuses, nerves and ganglia, it constitutes the peripheral nervous system. Examples: cervical nerve plexus, brachial nerve plexus, sacral nerve plexus[FMA]." [FMA:5901, https://github.com/obophenotype/cell-ontology/issues/1306, Wikipedia:Nervous_system_plexus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "plexus" BROAD [] xref: AEO:0000138 @@ -190270,6 +191907,8 @@ name: conjunctiva def: "The mucous membrane that lines the inner surface of the eyelids and the front of the eyeball." [MESH:A09.371.060.200, MGI:csmith, MP:0001310] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "conjunctivae" EXACT OMO:0003004 [XAO:0000182] @@ -190307,6 +191946,8 @@ id: UBERON:0001812 name: palpebral conjunctiva def: "A thin transparent mucous membrane that covers the posterior surface of the eyelids and is continuous with the bulbar conjunctiva at the conjunctival fornicies." [MP:0013394] comment: lines the eyeballs +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "conjunctival layer of eyelids" EXACT [MP:0013394] synonym: "eyelid conjunctiva" RELATED [] @@ -190327,6 +191968,8 @@ id: UBERON:0001813 name: spinal nerve plexus def: "An intermingling of fiber fascicles from adjacent spinal nerves to form a network." [http://www.medilexicon.com/medicaldictionary.php?t=70024] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "plexus nervorum spinalium" EXACT OMO:0003011 [FMA:5903, FMA:TA] synonym: "plexus of spinal nerves" EXACT [FMA:5903] synonym: "somatic nerve plexus" EXACT [FMA:5903] @@ -190352,6 +191995,8 @@ id: UBERON:0001814 name: brachial nerve plexus def: "An arrangement of nerve fibers, running from the spine where it proceeds through the neck then the axilla and into the arm where it innervates skin and muscle. [WP,modified]." [UBERON:cjm, Wikipedia:Brachial_plexus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "brachial plexus" EXACT [MA:0001180] synonym: "plexus brachialis" RELATED OMO:0003011 [Wikipedia:Brachial_plexus] @@ -190381,6 +192026,8 @@ property_value: homology_notes "To reach the muscles, dermatomes, and other stru id: UBERON:0001815 name: lumbosacral nerve plexus def: "An arrangement of nerve fibers, running from the spine that travels to the pelvic appendage where it innervates skin and muscle." [UBERON:cjm] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "lumbosacral plexus" EXACT [] synonym: "plexus lumbosacralis" EXACT OMO:0003011 [FMA:5907, FMA:TA] @@ -190407,6 +192054,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8d/Gr id: UBERON:0001816 name: autonomic nerve plexus def: "A nerve plexus that is part of an autonomic nervous system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "autonomic plexus" EXACT [] synonym: "plexus autonomicus" EXACT OMO:0003011 [FMA:5910, FMA:TA] synonym: "plexus nervosus visceralis" EXACT OMO:0003011 [FMA:5910, FMA:TA] @@ -190427,6 +192076,8 @@ id: UBERON:0001817 name: lacrimal gland def: "The lacrimal glands are paired almond-shaped glands, located in or near the orbital region, that secrete the aqueous layer of the tear film.[WP]." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Lacrimal_gland] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -190471,6 +192122,8 @@ property_value: taxon_notes "Innervation is highly complex and species-specific" id: UBERON:0001818 name: tarsal gland def: "A modified lobulated sebaceous gland at the rim of an eyelid, responsible for the supply of meibum." [ISBN:0123813611, PMID:20664693, Wikipedia:Meibomian_gland] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -190502,6 +192155,8 @@ property_value: development_notes "in mice, meibomian gland development is initi id: UBERON:0001819 name: palpebral fissure def: "Orifice separating upper and lower eyelids. In the human adult this measures about 10mm vertically and 30 mm horizontally. It can be reduced in size in fetal alcohol syndrome. In Trisomy 9 the palpebral fissures can be upslanting. [WP,modified]." [Wikipedia:Palpebral_fissure] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "rima palpebrarum" RELATED OMO:0003011 [Wikipedia:Palpebral_fissure] @@ -190523,6 +192178,8 @@ id: UBERON:0001820 name: sweat gland def: "Any of the coil glands of the skin that secrete sweat." [ISBN:0-683-40008-8, MP:0000674] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -190564,6 +192221,8 @@ id: UBERON:0001821 name: sebaceous gland def: "A holocrine gland that secretes sebum into the hair follicles, or in hairless areas into ducts.[MP]." [MP:0000647, Wikipedia:Sebaceous_gland] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -190602,6 +192261,8 @@ property_value: homology_notes "Sebaceous glands are also limited to mammals.[we id: UBERON:0001822 name: orbital septum def: "A membranous sheet that acts as the anterior boundary of the orbit. It extends from the orbital rims to the eyelids[WP]." [Wikipedia:Orbital_septum] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: uberon_slim synonym: "septum orbitale" RELATED OMO:0003011 [Wikipedia:Orbital_septum] @@ -190622,6 +192283,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/18/Gr id: UBERON:0001823 name: nasal cartilage def: "One of the cartilage structures in the nose that provide form and support[WP]." [Wikipedia:Nasal_cartilage] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cartilage of nose" EXACT [] @@ -190648,6 +192311,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gr id: UBERON:0001824 name: mucosa of larynx def: "The mucous lining of the larynx, which is composed of squamous epithelium in the upper larynx and ciliated columnar epithelium in the lower larynx." [MP:0002261] +subset: human_subset +subset: mouse_subset synonym: "laryngeal mucosa" EXACT [] synonym: "laryngeal mucous membrane" RELATED [EMAPA:18334] synonym: "larynx mucosa" EXACT [] @@ -190676,6 +192341,8 @@ relationship: part_of UBERON:0001737 ! larynx id: UBERON:0001825 name: paranasal sinus def: "The paired air-filled cavities surrounded by the bones of the face that are lined by mucous membranes and are continuous with the nasal cavity." [ISBN:0-683-40008-8, MP:0002240] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "nasal sinus" RELATED [GAID:355] @@ -190705,6 +192372,8 @@ property_value: development_notes "Arise as epithelial lined diverticula of the id: UBERON:0001826 name: nasal cavity mucosa def: "The mucous membrane that lines the nasal cavity[MP]." [MP:0002238] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "mucosa of nose" EXACT [FMA:59684] synonym: "mucous membrane of nose" EXACT [FMA:59684] @@ -190731,6 +192400,8 @@ property_value: editor_note "TODO - check lining vs part of. split olfactory and id: UBERON:0001827 name: secretion of lacrimal gland def: "Aqueous substance secreted by the lacrimal gland." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Tear] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "lacrimal fluid" EXACT [] synonym: "lacrimal gland secretion" EXACT [] @@ -190762,6 +192433,8 @@ id: UBERON:0001828 name: gingiva def: "The fibrous investing tissue, covered by keratinized epithelium, that immediately surrounds a tooth and is contiguous with its periodontal ligament and with the mucosal tissues of the mouth[Glossary of Periodontal Terms 2001]." [ISBN:0013002015, Wikipedia:Gingiva] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "gingival mucosa" RELATED [] @@ -190797,6 +192470,8 @@ property_value: has_relational_adjective "gingival" xsd:string id: UBERON:0001829 name: major salivary gland def: "One of the three largest glands of the oral cavity that secrete most of the saliva, including the parotid, submandibular, and sublingual glands." [MP:0003792] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim xref: FMA:59788 @@ -190815,6 +192490,8 @@ id: UBERON:0001830 name: minor salivary gland def: "One of the smaller, largely mucus-secreting, exocrine glands of the oral cavity, consisting of the labial, buccal, molar, lingual, and palatine glands[MP]." [MP:0003791, Wikipedia:Salivary_gland#Minor_Salivary_Glands] comment: There are over 600 minor salivary glands located throughout the oral cavity within the lamina propria of the oral mucosa. They are 1-2mm in diameter and unlike the other glands, they are not encapsulated by connective tissue only surrounded by it. The gland is usually a number of acini connected in a tiny lobule. A minor salivary gland may have a common excretory duct with another gland, or may have its own excretory duct. Their secretion is mainly mucous in nature (except for von Ebner's glands) and have many functions such as coating the oral cavity with saliva[WP]. +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim xref: EMAPA:35574 @@ -190836,6 +192513,8 @@ name: parotid gland def: "The parotid gland is the largest of the salivary glands. It is found wrapped around the mandibular ramus, and it secretes saliva through Stensen's duct into the oral cavity, to facilitate mastication and swallowing. [WP,unvetted]." [Wikipedia:Parotid_gland] comment: The mouse parotid, exorbital lacrimal gland and exocrine pancreas have similar histological appearances[ISBN:0123813611] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "glandula parotidea" RELATED OMO:0003011 [Wikipedia:Parotid_gland] @@ -190872,6 +192551,8 @@ property_value: homology_notes "The most common oral glands in mammals are the s id: UBERON:0001832 name: sublingual gland def: "The small mucin-producing salivary glands in the floor of the mouth beneath the tongue, anterior to the submandibular gland." [MGI:hdene, MP:0004035] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ductus sublingualis" EXACT [] @@ -190906,6 +192587,8 @@ property_value: taxon_notes "Single lobed in mouse; largest acini of the 3 roden id: UBERON:0001833 name: lip def: "One of the two fleshy folds which surround the opening of the mouth." [http://www.medterms.com/script/main/art.asp?articlekey=9458, Wikipedia:Lip] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -190943,6 +192626,8 @@ id: UBERON:0001834 name: upper lip alt_id: UBERON:0003391 def: "Lip that covers the upper portion of the mouth.[TAO]." [TAO:0001970, Wikipedia:Upper_lip] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -190971,6 +192656,8 @@ id: UBERON:0001835 name: lower lip alt_id: UBERON:0003392 def: "Lip that covers the lower portion of the mouth.[TAO]." [TAO:0002060, Wikipedia:Lower_lip] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -190997,6 +192684,8 @@ property_value: external_definition "Lip that covers the lower portion of the mo id: UBERON:0001836 name: saliva def: "A fluid produced in the oral cavity by salivary glands, typically used in predigestion, but also in other functions." [GO:0046541, Wikipedia:Saliva] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "sailva normalis" RELATED OMO:0003011 [Wikipedia:Saliva] synonym: "saliva atomaris" RELATED OMO:0003011 [Wikipedia:Saliva] @@ -191024,6 +192713,8 @@ property_value: taxon_notes "We classify a wide variety of not necessarily homol id: UBERON:0001837 name: duct of salivary gland def: "The duct of a salivary gland." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "salivary duct" EXACT [] @@ -191052,6 +192743,8 @@ relationship: part_of UBERON:0001044 ! saliva-secreting gland id: UBERON:0001838 name: sublingual duct def: "A duct of a sublingual gland." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: BTO:0004558 @@ -191072,6 +192765,8 @@ id: UBERON:0001839 name: bony labyrinth def: "A system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [Wikipedia:Bony_labyrinth] comment: Ideally we would place a spatially disjoint from relationship to membranous labyrinth, but there are many parts in common. this should be resolved. +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "labyrinthus osseus" RELATED OMO:0003011 [Wikipedia:Bony_labyrinth] @@ -191101,6 +192796,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/22/Gr id: UBERON:0001840 name: semicircular canal def: "One of three half-circular, interconnected tubes located inside each ear[WP]." [Wikipedia:Semicircular_canal] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -191140,6 +192837,8 @@ property_value: homology_notes "In gnathostomes, each membranous labyrinth has t [Term] id: UBERON:0001841 name: anterior semicircular canal +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -191171,6 +192870,8 @@ property_value: function_notes "detects angular acceleration" xsd:string id: UBERON:0001842 name: posterior semicircular canal def: "The posterior semicircular canal is a part of the vestibular system and detects rotations of the head in the sagittal plane." [Wikipedia:Posterior_semicircular_canal] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -191201,6 +192902,8 @@ property_value: function_notes "detects angular acceleration" xsd:string [Term] id: UBERON:0001843 name: lateral semicircular canal +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -191227,6 +192930,8 @@ id: UBERON:0001844 name: cochlea def: "The spiral-shaped bony canal in the inner ear containing the hair cells that transduce sound. Its core component is the Organ of Corti, the sensory organ of hearing, which is distributed along the partition separating fluid chambers in the coiled tapered tube of the cochlea. [WP,modified]." [ISBN:0-683-40008-8, MP:0000031, Wikipedia:Cochlea] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -191278,6 +192983,8 @@ property_value: taxon_notes "the cochlea is coiled in most mammals, monotremes b id: UBERON:0001845 name: perilymph def: "Transudate contained in the osseous labyrinth outside the membranous labyrinth.[FMA]." [FMA:FMA, Wikipedia:Perilymph] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -191303,6 +193010,8 @@ id: UBERON:0001846 name: internal ear def: "Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation." [PMID:16217737, Wikipedia:Internal_ear, ZFIN:curator] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -191348,6 +193057,8 @@ property_value: homology_notes "The labyrinth, or inner ear, evolved very early id: UBERON:0001847 name: lobule of pinna def: "The soft lower part of the external ear, projecting below the antitragus." [Wikipedia:Ear_lobe] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "auricular lobule" EXACT [] @@ -191376,6 +193087,8 @@ property_value: structure_notes "The earlobe is composed of tough areolar and ad id: UBERON:0001848 name: auricular cartilage def: "Cartilage of the pinna and much of the external ear canal." [http://medical-dictionary.thefreedictionary.com/auricular+cartilage] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cartilage of pinna" EXACT [FMA:61013] synonym: "pinna cartilage" EXACT [] @@ -191395,6 +193108,8 @@ id: UBERON:0001849 name: membranous labyrinth alt_id: UBERON:0010113 def: "Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. The membranous labyrinth is lodged within the bony labyrinth and has the same general form; it is, however, considerably smaller and is partly separated from the bony walls by a quantity of fluid, the perilymph.[FMA, WP]." [FMA:61022, Wikipedia:Membranous_labyrinth] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -191425,6 +193140,8 @@ property_value: homology_notes "The labyrinth, or inner ear, evolved very early id: UBERON:0001850 name: lacrimal drainage system def: "A collection of channels that connects the conjunctival sac with the nasal cavity, encompassing the lacrimal ducts, the lacrimal sac and the naso-lacrimal duct." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "lacrimal duct" RELATED [FMA:61063, MA:0001295] @@ -191448,6 +193165,8 @@ property_value: taxon_notes "chelonians lack a lacrimal duct, and lacrimal/harde id: UBERON:0001851 name: cortex def: "Outermost layer of an organ[WP]." [Wikipedia:Cortex_(anatomy)] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: upper_level @@ -191467,6 +193186,8 @@ property_value: has_relational_adjective "cortical" xsd:string id: UBERON:0001852 name: endolymph def: "Transudate contained within the membranous labyrinth.[FMA]." [FMA:61112, Wikipedia:Endolymph] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -191496,6 +193217,8 @@ id: UBERON:0001853 name: utricle of membranous labyrinth def: "The larger of the two otolith organs in the vestibule." [ISBN:0-8036-0655-9, MGI:smb, MP:0006090, PMID:15363417, Wikipedia:Utricle_(ear)] comment: XAO/AAO to be checked - see https://github.com/seger/aao/issues/5; AAO has both utricle and utriculus; these are generally considered synonyms - e.g. http://www.fishbase.org/glossary/Glossary.php?q=utriculus +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -191530,6 +193253,8 @@ id: UBERON:0001854 name: saccule of membranous labyrinth def: "The smaller of the two otolith organs in the vestibule." [ISBN:0-8036-0655-9, MGI:smb, MP:0006089, PMID:15363417, Wikipedia:Saccule] comment: XAO/AAO to be checked - see https://github.com/seger/aao/issues/5 +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -191564,6 +193289,8 @@ property_value: homology_notes "In gnathostomes, each membranous labyrinth has t id: UBERON:0001855 name: cochlear duct of membranous labyrinth def: "An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Houses the organ of Corti[WP]." [Wikipedia:Cochlear_duct] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cochlea duct" EXACT [BIRNLEX:2562] @@ -191604,6 +193331,8 @@ property_value: homology_notes "In gnathostomes, each membranous labyrinth has t id: UBERON:0001856 name: semicircular duct def: "Any of the three loop-shaped membranous inner tubular parts of the semicircular canals that are about one-fourth the diameter of the corresponding outer bony canals, that communicate at each end with the utricle, and that have near one end an expanded ampulla containing an area of sensory epithelium." [http://dictionary.reference.com/browse/semicircular+duct] +subset: human_subset +subset: mouse_subset synonym: "ductus semicirculares" RELATED OMO:0003004 [FMA:71880, FMA:TA] synonym: "membranous semicircular canal" RELATED [MA:0000251] xref: EMAPA:32830 @@ -191624,6 +193353,8 @@ property_value: homology_notes "In gnathostomes, each membranous labyrinth has t [Term] id: UBERON:0001857 name: anterior semicircular duct +subset: human_subset +subset: mouse_subset synonym: "superior semicircular duct" RELATED [VHOG:0000246] xref: EMAPA:37411 {source="MA:th"} xref: FMA:61123 @@ -191641,6 +193372,8 @@ property_value: homology_notes "Vertebrata is characterized by three synapomorph id: UBERON:0001858 name: posterior semicircular duct def: "The semicircular canals are three half-circular, interconnected tubes located inside each ear. The three canals are the horizontal semicircular canal (also known as the lateral semicircular canal), superior semicircular canal (also known as the anterior semicircular canal), and the posterior semicircular canal. The canals are aligned approximately orthogonally to one another. The horizontal canal is aligned roughly horizontally in the head. The superior and anterior canals are aligned roughly at a 45 degree angle to a vertical plane drawn from the nose to the back of the skull. Thus, the horizontal canal detects horizontal head movements (such as when doing a pirouette), while the superior and posterior canals detect vertical head movements. Each canal is filled with a fluid called endolymph and contains a motion sensor with little hairs whose ends are embedded in a gelatinous structure called the cupula. As the skull twists in any direction, the endolymph is thrown into different sections of the canals. The cilia detect when the endolymph rushes past, and a signal is then sent to the brain. The semicircular canals are a component of the Labyrinth. Among species of mammals, the size of the semicircular canals is correlated with their type of locomotion. Specifically, species that are agile and have fast, jerky locomotion have larger canals relative to their body size than those that move more cautiously." [Wikipedia:Semicircular_canal] +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: EMAPA:37413 {source="MA:th"} xref: FMA:61126 @@ -191659,6 +193392,8 @@ property_value: homology_notes "Vertebrata is characterized by three synapomorph [Term] id: UBERON:0001859 name: lateral semicircular duct +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "external semicircular duct" RELATED [] xref: EMAPA:37412 {source="MA:th"} @@ -191678,6 +193413,8 @@ property_value: homology_notes "Gnathostome ears have a horizontal semicircular id: UBERON:0001860 name: endolymphatic duct def: "The small membranous canal, connecting with both saccule and utricle of the membranous labyrinth, passing through the aqueduct of vestibule, and terminating in the endolymphatic sac." [MGI:anna, MGI:smb, MP:0006011] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -191704,6 +193441,8 @@ property_value: has_relational_adjective "endolymphatic" xsd:string id: UBERON:0001861 name: ductus reuniens def: "The canalis reuniens of Hansen is part of the human inner ear. It connects the lower part of the saccule to the ductus cochlearis near its vestibular extremity." [Wikipedia:Canalis_reuniens_of_Hensen] +subset: human_subset +subset: mouse_subset synonym: "canal of Henson" RELATED [Wikipedia:Canalis_reuniens_of_Hensen] synonym: "canalis reuniens" RELATED [Wikipedia:Canalis_reuniens_of_Hensen] synonym: "canalis reuniens of Hensen" RELATED [Wikipedia:Canalis_reuniens_of_Hensen] @@ -191724,6 +193463,8 @@ relationship: part_of UBERON:0001862 {source="EMAPA"} ! vestibular labyrinth id: UBERON:0001862 name: vestibular labyrinth def: "The part of the membranous labyrinth that includes the utricle and saccule lodged within the vestibule and the semicircular ducts lodged eccentrically in the corresponding canals." [BTO:0001856] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "inner ear vestibular component" EXACT [EHDAA2:0000832] synonym: "labyrinthus vestibularis" RELATED [BTO:0001856] @@ -191749,6 +193490,8 @@ relationship: part_of UBERON:0001849 ! membranous labyrinth id: UBERON:0001863 name: scala vestibuli def: "The division of the spiral canal of the cochlea lying on the apical side of the spiral lamina and vestibular membrane." [MGI:anna, MP:0003168] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: EMAPA:35753 @@ -191769,6 +193512,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/19/Gr id: UBERON:0001864 name: scala tympani def: "The division of the spiral canal of the cochlea lying on the basal side of the spiral lamina." [MGI:anna, MP:0003167] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: EMAPA:35752 @@ -191788,6 +193533,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/16/Gr [Term] id: UBERON:0001865 name: cartilaginous external acoustic tube +subset: human_subset +subset: mouse_subset synonym: "cartilaginous external acoustic meatus" EXACT [] synonym: "cartilaginous part of external acoustic meatus" EXACT [] synonym: "external acoustic meatus cartilaginous part" EXACT [] @@ -191805,6 +193552,8 @@ relationship: part_of UBERON:0001352 ! external acoustic meatus id: UBERON:0001866 name: sebum def: "Fatty lubricant matter secreted by sebaceous glands, and made of made of triglyceride oils, wax, squalene, and metabolytes of fat-producing cells[BTO,WP]." [BTO:0001981, Wikipedia:Sebaceous_glands#Sebum] +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: BTO:0001981 xref: ENVO:02000037 @@ -191827,6 +193576,8 @@ property_value: taxon_notes "The composition of sebum varies across species. In id: UBERON:0001867 name: cartilage of external ear def: "A cartilage that is part of a external ear [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "external ear cartilage" EXACT [] xref: EMAPA:37706 {source="MA:th"} @@ -191846,6 +193597,8 @@ relationship: part_of UBERON:0001691 ! external ear id: UBERON:0001868 name: skin of chest def: "A zone of skin that is part of a chest [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior thoracic region zone of skin" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax zone of skin" EXACT [OBOL:automatic] @@ -191874,6 +193627,8 @@ id: UBERON:0001869 name: cerebral hemisphere def: "One of two bilateral, largely symmetrical organ subdivisions within the telencephalon which contain the cerebral cortex and cerebral white matter.[FMA]." [FMA:61817, Wikipedia:Cerebral_hemisphere] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cerebrum" RELATED [https://github.com/obophenotype/uberon/issues/1208, MA:0000133, VHOG:0001639] @@ -191918,6 +193673,8 @@ name: frontal cortex def: "Anterior portion of the neocortex, lying anterior to the central sulcus in humans. It is bounded by the parietal cortex posteriorly and the temporal cortex laterally[NIFSTD,modified]." [NLXANAT:20090601] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cortex of frontal lobe" EXACT [FMA:242199] @@ -191950,6 +193707,8 @@ def: "Lower lateral part of the cerebral hemisphere. (MSH)." [BIRNLEX:1160] comment: Boundary notes: It is bounded dorsally by the lateral fissure and posteriorly by an arbitrary border shared with the occipital lobe. [Wikipedia:Temporal_lobe] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "lobus temporalis" EXACT OMO:0003011 [Wikipedia:Temporal_lobe] @@ -191985,6 +193744,8 @@ name: parietal lobe def: "Upper central part of the cerebral hemisphere. (MSH)." [BIRNLEX:1148] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "lobus parietalis" RELATED OMO:0003011 [Wikipedia:Parietal_lobe] @@ -192020,6 +193781,8 @@ alt_id: UBERON:0010122 def: "Subcortical nucleus of telecephalic origin consisting of an elongated gray mass lying lateral to and bordering the lateral ventricle. It is divided into a head, body and tail in some species." [BIRNLEX:1373] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "Ammon horn fields" RELATED [BAMS:CA] @@ -192065,6 +193828,8 @@ id: UBERON:0001874 name: putamen def: "Subcortical nucleus of telencephalic , which together with the caudate nucleus, forms the striatum. The putamen lies lateral to the internal capsule and medial to the external medullary lamina, and is separated from the caudate nucleus by the fibers of the internal capsule for most of its length, except at its anterior portion." [BIRNLEX:809] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "nucleus putamen" EXACT [] @@ -192107,6 +193872,8 @@ name: globus pallidus def: "Subcortical nucleus, functionally part of the basal ganglia, which consists of two segments the external (or lateral) and internal (or medial) separated by the medial medullary lamina in primates. In rodents, The globus pallidus lateral is separated from the medial segment by the fibers of the internal capsule/cerebral peduncle." [BIRNLEX:1234] comment: BTO and MA are inconsistent w.r.t striatum and pallidum being non-overlapping as in ABA. Note that we have pallidum as part_of basal gangion, so we can make the direct link to basal ganglion. ISBN:1588900649 says: ... a derivative of the diencephalon, seperates as a result of growing fibers of theinternal capsule and is finally displaced into telencephalon. only a small medial remnannt remains, the entopeduncular nucleus. The globus pallidus should be regarded as part of the subthalamus subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "globus pallidus (Burdach)" RELATED [NeuroNames:231] @@ -192153,6 +193920,8 @@ name: amygdala def: "Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM)." [BIRNLEX:1241] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "amygdaloid area" RELATED [] @@ -192211,6 +193980,8 @@ property_value: homology_notes "One part of the striatum is called the archistri id: UBERON:0001877 name: medial septal nucleus def: "Cells lying generally in front of Regional_part_of_septal_nuclei, lying ventral to and slightly medial to the lateral septal nucleus. Neurons in this nucleus give rise to the bulk of efferents from the septal nuclei. A major projection from the medial septal nucleus terminates in the hippocampal formation (Adapted from Brodal, 1981)." [BIRNLEX:1668, https://github.com/obophenotype/uberon/issues/1356] +subset: human_subset +subset: mouse_subset synonym: "medial parolfactory nucleus" EXACT [FMA:61879] synonym: "medial septal nucleus (Cajal)" RELATED [NeuroNames:262] synonym: "medial septum" NARROW [BIRNLEX:1668] @@ -192242,6 +194013,8 @@ property_value: external_definition "The medial septal nucleus is one of the sep [Term] id: UBERON:0001878 name: septofimbrial nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus septalis fimbrialis" RELATED OMO:0003011 [NeuroNames:264] synonym: "nucleus septofibrialis" EXACT [BIRNLEX:730] synonym: "nucleus septofimbrialis" RELATED [NeuroNames:264] @@ -192268,6 +194041,8 @@ relationship: part_of UBERON:0002663 {source="NIFSTD"} ! septal nuclear complex id: UBERON:0001879 name: nucleus of diagonal band def: "A brain structure that is part of the septal nuclear complex. It is connected with the hippocampus, hypothalamus and amygdala." [ncithesaurus:Nucleus_of_Diagonal_Band] +subset: human_subset +subset: mouse_subset synonym: "area olfactoria (Roberts)" RELATED OMO:0003011 [NeuroNames:265] synonym: "diagonal band nucleus" EXACT [] synonym: "diagonal nucleus" RELATED [NeuroNames:265] @@ -192301,6 +194076,8 @@ name: bed nucleus of stria terminalis def: "A brain structure in the forebrain wrapped around the stria terminalis. It's largest extent can be found around the crossing of the anterior commissure[INCF]." [INCF:Seattle_mtg_2010, Wikipedia:Stria_terminalis#Bed_nucleus_of_the_stria_terminalis] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "bed nuclei of the stria terminalis" EXACT OMO:0003004 [ABA:BST] synonym: "bed nuclei of the stria terminalis" RELATED [BAMS:BST] synonym: "bed nucleus of the stria terminalis" EXACT [BIRNLEX:724] @@ -192346,6 +194123,8 @@ relationship: surrounds UBERON:0003029 ! stria terminalis id: UBERON:0001881 name: island of Calleja def: "One of the seven small groups of granule cells in the polymorph layer of the olfactory tubercle and one large group, the insula magna, which lies along the border between septum, nucleus accumbens and nucleus of the diagonal band." [MP:0010010, PMID:80412] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "Calleja island" EXACT [] @@ -192387,6 +194166,8 @@ name: nucleus accumbens def: "A region of the brain consisting of a collection of neurons located in the forebrain ventral to the caudate and putamen. (caudoputamen in rodent) and continuous with these structures. There is no distinct boundary between the nucleus accumbens and the caudate/putamen, but in rodents, it can be identified by its lack of traversing fiber bundles in comparison to the dorsal striatum. Its principle neuron is the medium spiny neuron. Together with the neostriatum (caudate nucleus and putamen), the nucleus accumbens forms the striatum." [BIRNLEX:727] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "accumbens nucleus" EXACT [FMA:61889] @@ -192433,6 +194214,8 @@ property_value: taxon_notes "The ventral striatopallidal complex in birds corres id: UBERON:0001883 name: olfactory tubercle def: "Region in the ventral telencephalon, prominent in rodents, but present in all mammals, consisting of a laminated cortical part and the cap/hilus region. It is traditionally viewed as part of the olfactory cortex but recognized by some as having a striatal character. According to many authors, the structure of the OT transitions from cortical like to striatal like along the lateral medial axis. (Maryann Martone)." [NLXANAT:1005037] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "tuberculum olfactorium" EXACT OMO:0003011 [] @@ -192470,6 +194253,8 @@ id: UBERON:0001884 name: phrenic nerve def: "A nerve that arises from the caudal cervical nerves and is primarily the motor nerve of the diaphragm but also sends sensory fibers to the pericardium." [VHOG:0000728] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "diaphragmatic nerve" RELATED [BTO:0001063] @@ -192505,6 +194290,8 @@ name: dentate gyrus of hippocampal formation def: "Part of the hippocampal formation forming a 'V' or 'U' shaped structure with the opening bounded by hippocampal area CA3. It consists of 3 layers from superficial to deep: molecular, granule cell and polymorphic or hilar layer." [BIRNLEX:1178] comment: BTO says dentate gyrus = fascia dentata + hilus. Note that GO classifies dentate gyrus development under hippocampus development subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "area dentata" EXACT [] @@ -192548,6 +194335,8 @@ id: UBERON:0001886 name: choroid plexus def: "A network formed by blood vessels and the tela choroidea which secretes CSF into the ventricular spaces." [ISBN:0471888893, Wikipedia:Choroid_plexus] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -192598,6 +194387,8 @@ id: UBERON:0001887 name: internal capsule of telencephalon def: "White matter regional part of brain which is flanked by nuclear masses, consisting of both afferent and efferent fibers projecting between the cerebral cortex and the brainstem and spinal cord. It consists of three distinct parts: an anterior limb, posterior limb, and genu. (Adapted from MSH by Maryann Martone)." [BIRNLEX:1659] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "brain internal capsule" EXACT [MP:0008128] @@ -192632,6 +194423,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Te id: UBERON:0001888 name: lateral olfactory stria def: "White matter tract that contains projections from the olfactory bulb to the olfactory cortex (Maryann Martone)." [BIRNLEX:1559] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "lateral olfactory stria" RELATED [FMA:61971, NeuroNames:284] @@ -192670,6 +194463,8 @@ property_value: taxon_notes "In mammals the fibers of the dorsal lateral olfacto [Term] id: UBERON:0001889 name: trunk of phrenic nerve +subset: human_subset +subset: mouse_subset synonym: "phrenic nerve trunk" EXACT [] synonym: "phrenic neural trunk" EXACT [] xref: EHDAA2:0001463 @@ -192687,6 +194482,8 @@ name: forebrain def: "The most anterior region of the brain including both the telencephalon and diencephalon." [Wikipedia:Forebrain, ZFIN:ZDB-PUB-961014-576] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -192739,6 +194536,8 @@ name: midbrain def: "The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO]." [GO:0030901] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -192797,6 +194596,8 @@ id: UBERON:0001892 name: rhombomere def: "A segment of the developing hindbrain[ZFA]. In the vertebrate embryo, a rhombomere is a transiently divided segment of the developing neural tube, within the hindbrain region (a neuromere) in the area that will eventually become the rhombencephalon. The rhombomeres appear as a series of slightly constricted swellings in the neural tube, caudal to the cephalic flexure.[WP]." [Wikipedia:Rhombomere, ZFIN:curator] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -192833,6 +194634,8 @@ id: UBERON:0001893 name: telencephalon def: "Part of the forebrain consisting of paired olfactory bulbs and cerebral hemispheres." [AAO:0010479, XAO:0000012] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -192896,6 +194699,8 @@ id: UBERON:0001894 name: diencephalon def: "The division of the forebrain that develops from the foremost primary cerebral vesicle." [Wikipedia:Diencephalon] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -192965,6 +194770,8 @@ id: UBERON:0001895 name: metencephalon def: "Rostral segment of the hindbrain that has as its parts the pons (where present) and the cerebellum[WP,modified]." [https://github.com/obophenotype/uberon/issues/300, Wikipedia:Metencephalon] comment: the terms metencephalon and myelencephalon are only meaningful in mammals and birds[Neuroanatomy of the Zebrafish Brain]. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished in ZFA[ZFA]. +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "epencephalon" BROAD INCONSISTENT [ncithesaurus:Epencephalon] @@ -193006,6 +194813,8 @@ name: medulla oblongata def: "Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]." [FMA:62004, GO:0021550, Wikipedia:Bone_marrow_of_ovary_oblongata] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -193065,6 +194874,8 @@ name: dorsal plus ventral thalamus def: "Subcortical brain region consisting of paired gray matter bodies in the dorsal diencephalon and forming part of the lateral wall of the third ventricle of the brain. The thalamus represents the major portion of the diencephalon and is commonly divided into cellular aggregates known as nuclear groups.(MeSH). The dorsal topographic division of the interbrain. The macrodissected adult human thalamus was clearly illustrated by Vesalius in 1543 and the term as defined here was introduced by His in 1893. It includes the traditional epithalamus, dorsal thalamus, and ventral thalamus of Herrick (1910, pp. 494, 498). Also see Kuhlenbeck (1927, Ch. 9) and Jones (1985, p. 87)." [BIRNLEX:954] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -193120,6 +194931,8 @@ name: hypothalamus def: "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. [ZFA]. One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis).[Wikipedia]." [Wikipedia:Hypothalamus, ZFIN:curator] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -193183,6 +194996,8 @@ name: epithalamus def: "Most dorsal part of the thalamus, comprising the pineal gland and habenular nuclei in most vertebrates. In a few vertebrates, it also includes the parietal eye. (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed, 2005, pg. 345-346." [BIRNLEX:1710] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -193240,6 +195055,8 @@ name: ventral thalamus def: "Anterior part of the diencephalon that lies between the dorsal thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis[GO, modified]." [GO:0021539] comment: Some sources treat the subthalamus as distinct from the thalamus, separated by the zona limitans intrathalamica. In MA, the ventral thalamus is part of the thalamus. Butler Hodos who identify a dorsal to ventral sequence consisting of epithalamus, dorsal thalamus, ventral thalamus and hypothalamus. We solve this by considering dorsal and ventral thalamus distinct, and the label thalamus as being ambiguous w.r.t thalamus proper (dorsal thalamus) or wider thalamus (dorsal plus ventral) subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -193288,6 +195105,8 @@ name: epithelium of trachea alt_id: UBERON:0003227 def: "The epithelial lining of the trachea which contains numerous ciliated cells." [ISBN:0-397-51047-0, MGI:cwg, MP:0002285] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epithelial tissue of trachea" EXACT [OBOL:automatic] synonym: "epithelial tissue of windpipe" EXACT [OBOL:automatic] @@ -193320,6 +195139,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0001902 name: epithelium of small intestine def: "An epithelium that is part of a small intestine [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "epithelial tissue of small bowel" EXACT [OBOL:automatic] synonym: "epithelial tissue of small intestine" EXACT [OBOL:automatic] @@ -193351,6 +195172,8 @@ id: UBERON:0001903 name: thalamic reticular nucleus def: "The thalamic reticular nucleus is part of the ventral thalamus that forms a capsule around the thalamus laterally. It is separated from the thalamus by the external medullary lamina. Reticular cells are GABAergic, and have discoid dendritic arbors in the plane of the nucleus. Thalamic Reticular Nucleus is variously abbreviated TRN, RTN, NRT, and RT. [WP,unvetted]." [Wikipedia:Thalamic_reticular_nucleus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nuclei reticulares (thalami)" RELATED OMO:0003011 [NeuroNames:365] synonym: "nucleus reticularis" RELATED OMO:0003011 [NeuroNames:365] @@ -193392,6 +195215,8 @@ property_value: external_ontology_notes "only MA considers this part of a subtha id: UBERON:0001904 name: habenula def: "A segment of the epithalamus that has as its parts the habenular nuclei and the habenular commissure[FMA,modified]." [FMA:62032, http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -193436,6 +195261,8 @@ name: pineal body def: "A midline, cone like structure located in the dorso-caudal roof of the 3rd ventricle, attached by peduncles to the habenular and posterior commissures. The stalk contains nerve fibers, blood vessels, connective tissue and parenchymal cells (Paxinos, The Rat Central Nervous System, 2nd ed, pg 399)." [BIRNLEX:1184] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -193512,6 +195339,8 @@ name: subthalamic nucleus def: "The subthalamic nucleus is the lens-shaped nucleus located in the ventral part of the subthalamus on the inner aspect of the internal capsule that is concerned with the integration of somatic motor function[GO]." [GO:0021763] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "body of Forel" EXACT [] @@ -193566,6 +195395,8 @@ id: UBERON:0001907 name: zona incerta def: "The zona incerta is a horizontally elongated region of gray matter cells in the subthalamus below the thalamus. Its connections project extensively over the brain from the cerebral cortex down into the spinal cord. Its function is unknown though several have been proposed related to 'limbic-motor integration' such as controlling visceral activity and pain; gating sensory input and synchronizing cortical and subcortical brain rhythms. Its dysfunction may play a role in central pain syndrome. It is also been identified as a promising deep brain stimulation therapy target for treating Parkinsons Disease. Its existence was first described by Auguste Forel in 1877 as a 'region of which nothing certain can be said'. A hundred and thirty years later in 2007, Nadia Urbain and Martin Deschênes of Université Laval noted that the 'zona incerta is among the least studied regions of the brain; its name does not even appear in the index of many textbooks. ' [WP,unvetted]." [Wikipedia:Zona_incerta] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nucleus of the zona incerta" RELATED [BAMS:ZI] synonym: "zona incerta proper" RELATED [BAMS:ZI] @@ -193595,6 +195426,8 @@ id: UBERON:0001908 name: optic tract def: "Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm[ZFA]. Predominantly white matter structure found in diencephalon consisting of fibers originating in the retina. The optic tract is considered to extend from the point of the optic chiasm and terminates largely, although not exclusively, in the lateral geniculate complex. Other fibers end in the superior colliculus and other structures in the diencephalon, midbrain and brainstem (MM)[NIF]." [NIFSTD, Wikipedia:Optic_tract, ZFIN:curator] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -193642,6 +195475,8 @@ property_value: editor_note "relationships need checking by expert. NIF and ZFA id: UBERON:0001909 name: habenular commissure def: "A brain commissure that is situated in front of the pineal gland and connects the habenular nucleus on one side of the diencephalon with that on the other side." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Habenular_commissure] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -193682,6 +195517,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gr id: UBERON:0001910 name: medial forebrain bundle def: "The Medial forebrain bundle (MFB), is a complex bundle of axons coming from the basal olfactory regions, the periamygdaloid region, and the septal nuclei, and passing to the lateral hypothalamus, with some carrying on into the tegmentum. It contains both ascending and descending fibers. It also represents a part of the mesolimbic pathway, carrying information between the ventral tegmentum and the nucleus accumbens. It is commonly accepted that the MFB is a part of the reward system, involved in the integration of reward and pleasure. Electrical stimulation of the medial forebrain bundle is believed to cause sensations of pleasure. This hypothesis is based upon intracranial self-stimulation (ICSS) studies. Animals will work for MFB ICSS, and humans report that MFB ICSS is intensely pleasurable. This is most likely because the medial forebrain bundle carries information from the ventral tegmental area (VTA) to the nucleus accumbens (nAcc or Acb). The nAcc is a recognized reward center, and activation of the pathway from the VTA to the nAcc is believed to be rewarding, which is why it is sometimes referred to as the hedonic highway. [WP,unvetted]." [Wikipedia:Medial_forebrain_bundle] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "fasciculus longitudinalis telencephali medialis" RELATED OMO:0003011 [NeuroNames:433] @@ -193718,6 +195555,8 @@ name: mammary gland def: "A specialized accessory gland of the skin of mammals that secretes milk. The gland is typically only developed in females, and regresses in males." [BTO:0000817, http://orcid.org/0000-0002-6601-2165, Wikipedia:Mammary_gland] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -193773,6 +195612,8 @@ property_value: taxon_notes "The mammary glands of humans are in the thoracid/br id: UBERON:0001912 name: lobule of mammary gland def: "Organ component of the mammary gland which consists of an aggregate of mammary alveoli that communicate with a lobular lactiferous duct.[FMA]." [FMA:62090] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "acinus of mammary gland" EXACT [FMA:62090] @@ -193796,6 +195637,8 @@ property_value: editor_note "TODO - ensure correct terminology for lobes/lobules id: UBERON:0001913 name: milk def: "An emulsion of fat globules within a fluid that is secreted by the mammary gland during lactation." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "mammary gland milk" EXACT [] @@ -193830,6 +195673,8 @@ property_value: homology_notes "The detailed similarities of mammary glands in l id: UBERON:0001914 name: colostrum def: "The thin, yellow, serous fluid secreted by the mammary glands during pregnancy and immediately postpartum before lactation begins. It consists of immunologically active substances, white blood cells, water, protein, fat, and carbohydrates." [MESH:A12.200.194, Wikipedia:Colostrum] +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: BTO:0000276 xref: CALOHA:TS-0167 @@ -193848,6 +195693,8 @@ property_value: has_relational_adjective "colostral" xsd:string id: UBERON:0001915 name: endothelium of capillary def: "An endothelium that is part of a capillary [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood capillary endothelium" EXACT [OBOL:automatic] synonym: "capillary endothelium" EXACT [] synonym: "capillary vessel endothelium" EXACT [OBOL:automatic] @@ -193869,6 +195716,8 @@ relationship: part_of UBERON:0001982 ! capillary id: UBERON:0001916 name: endothelium of arteriole def: "An endothelium that is part of an arteriole [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arteriole endothelium" EXACT [] xref: EMAPA:36286 xref: FMA:62115 @@ -193885,6 +195734,8 @@ relationship: part_of UBERON:0001980 ! arteriole id: UBERON:0001917 name: endothelium of artery def: "An endothelium that is part of an artery [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arterial endothelium" EXACT [] synonym: "artery endothelium" EXACT [] xref: AAO:0011013 @@ -193909,6 +195760,8 @@ property_value: homology_notes "Vertebrates and a very few invertebrates such as id: UBERON:0001918 name: endothelium of venule def: "An endothelium that is part of a venule [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "venule endothelium" EXACT [] xref: EMAPA:36290 xref: FMA:62117 @@ -193925,6 +195778,8 @@ relationship: part_of UBERON:0001979 ! venule id: UBERON:0001919 name: endothelium of vein def: "An endothelium that is part of a vein [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "vein endothelium" EXACT [] synonym: "veinous endothelium" RELATED [VHOG:0001216] synonym: "venous endothelium" EXACT [] @@ -193949,6 +195804,8 @@ id: UBERON:0001920 name: paraventricular nucleus of thalamus def: "The nucleus paraventricularis anterior thalami and nuclues paraventricularis posterior thalami, two of the nuclei mediani thalami; they are situated on the dorsomedial wall of the thalamus, juxtaposed to the third ventricle." [Dorlands_Medical_Dictionary:MerckSource] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "nuclei paraventriculares thalami" EXACT OMO:0003011 [FMA:62152, FMA:TA] @@ -193986,6 +195843,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/P id: UBERON:0001921 name: reuniens nucleus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "medioventral nucleus" EXACT [FMA:62153] synonym: "nucleus endymalis (Hassler)" RELATED OMO:0003011 [NeuroNames:309] synonym: "nucleus of reunions" RELATED [NeuroNames:309] @@ -194015,6 +195874,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0001922 name: parafascicular nucleus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "nuclei parafasciculares thalami" EXACT [BIRNLEX:952] synonym: "nucleus parafascicularis" EXACT [BIRNLEX:952] @@ -194053,6 +195914,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0001923 name: central medial nucleus def: "A small cell group in the interthalamic adhesion of the thalamus that occupy the midline region of the internal medullary lamina, between the left and right paracentral nuclei." [MP:0008929] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "central medial nucleus of thalamus" EXACT [] synonym: "central medial nucleus of the thalamus" RELATED [NeuroNames:321] @@ -194090,6 +195953,8 @@ relationship: part_of UBERON:0002965 {source="NIFSTD"} ! rostral intralaminar nu id: UBERON:0001924 name: paracentral nucleus def: "One of the intralaminar nuclei of the thalamus, located medial to the central lateral nucleus." [MP:0008928] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "nucleus centralis lateralis superior (kusama)" EXACT [BIRNLEX:981] synonym: "nucleus paracentral" EXACT [BIRNLEX:981] @@ -194133,6 +195998,8 @@ id: UBERON:0001925 name: ventral lateral nucleus of thalamus def: "The ventral lateral nucleus (VL) is a nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Ventral_lateral_nucleus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "lateral ventral nucleus of thalamus" EXACT [FMA:62186] @@ -194183,6 +196050,8 @@ name: lateral geniculate body def: "The group of neurons that serve as the primary processor of visual information received from the retina via the optic tract and send processed information to the visual cortex of the occipital lobe." [ISBN:0-683-40008-8, MP:0004165] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "corpus geniculatum externum" RELATED [BTO:0004367] @@ -194229,6 +196098,8 @@ name: medial geniculate body def: "Nuclear complex of the thalamus situated on the caudal, subpial aspect of the thalamus (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 622)." [BIRNLEX:1670] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "corpus geniculatum mediale" EXACT [BIRNLEX:1670] @@ -194276,6 +196147,8 @@ id: UBERON:0001928 name: preoptic area def: "Area of the forebrain between the anterior commissure and optic chiasm." [Wikipedia:Preoptic_area, ZFIN:curator] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "area hypothalamica rostralis" RELATED [BTO:0001796] @@ -194322,6 +196195,8 @@ name: supraoptic nucleus def: "The supraoptic nucleus (SON) is a nucleus of magnocellular neurosecretory cells in the hypothalamus of the mammalian brain. The nucleus is situated at the base of the brain, adjacent to the optic chiasm. [WP,unvetted]." [https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376, Wikipedia:Supraoptic_nucleus] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "nucleus supraopticus" EXACT [BTO:0002697] @@ -194371,6 +196246,8 @@ id: UBERON:0001930 name: paraventricular nucleus of hypothalamus def: "Nucleus in the anterior part of the hypothalamus. (MSH) * one of the magnocellular hypothalamic nuclei, an elongated plate of large, deeply staining cells located close to the third ventricle in the anterior hypothalamic area; major source of oxytocin and to a lesser extent, of antidiuretic hormone, neurohormones, which are carried to the neurohypophysis along the paraventriculohypophysial tract. (CSP)." [BIRNLEX:1407] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "filiform nucleus" EXACT [] @@ -194419,6 +196296,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/P id: UBERON:0001931 name: lateral preoptic nucleus def: "The lateral preoptic nucleus is lateral to the medial preoptic nucleus. It also mediates non-REM sleep onset.[WP,unvetted]." [Wikipedia:Preoptic_area#Lateral_preoptic_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "area praeoptica lateralis" RELATED OMO:0003011 [NeuroNames:381] synonym: "area preoptica lateralis" RELATED OMO:0003011 [NeuroNames:381] @@ -194457,6 +196336,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Hy id: UBERON:0001932 name: arcuate nucleus of hypothalamus def: "The arcuate nucleus (or infundibular nucleus) is an aggregation of neurons in the mediobasal hypothalamus, adjacent to the third ventricle and the median eminence. The arcuate nucleus includes several important populations of neurons, including: Neuroendocrine neurons, Centrally-projecting neurons and Others. [WP,unvetted]." [Wikipedia:Arcuate_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "ArcH" BROAD OMO:0003000 [BIRNLEX:1638, NIFSTD:NeuroNames_abbrevSource] synonym: "arcuate hypothalamic nucleus" EXACT [] @@ -194504,6 +196385,8 @@ property_value: external_ontology_notes "the semantics of the BTO class arcuate [Term] id: UBERON:0001933 name: retrochiasmatic area +subset: human_subset +subset: mouse_subset synonym: "area retrochiasmatica" RELATED OMO:0003011 [NeuroNames:396] synonym: "nucleus supraopticus diffusus" RELATED OMO:0003011 [NeuroNames:396] synonym: "RCh" BROAD OMO:0003000 [BIRNLEX:1569, NIFSTD:NeuroNames_abbrevSource] @@ -194533,6 +196416,8 @@ relationship: part_of UBERON:0002555 {source="FMA", source="NIFSTD"} ! intermedi id: UBERON:0001934 name: dorsomedial nucleus of hypothalamus def: "The Dorsomedial hypothalamic nucleus is a nucleus of the hypothalamus. It is involved in feeding, drinking, and body weight regulation. [WP,unvetted]." [Wikipedia:Dorsomedial_hypothalamic_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "DMH" BROAD OMO:0003000 [BIRNLEX:1558, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsomedial hypothalamic nucleus" EXACT [] @@ -194579,6 +196464,8 @@ id: UBERON:0001935 name: ventromedial nucleus of hypothalamus def: "The ventromedial nucleus (sometimes referred to as the ventromedial hypothalamus) is a nucleus of the hypothalamus. [WP,unvetted]." [Wikipedia:Ventromedial_hypothalamic_nucleus] comment: part of tuberal area in MA +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nucleus hypothalamicus ventromedialis" RELATED OMO:0003011 [NeuroNames:398] synonym: "nucleus ventromedialis hypothalami" RELATED [BTO:0002472] @@ -194620,6 +196507,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Hy id: UBERON:0001936 name: tuberomammillary nucleus def: "The tuberomammillary nucleus is a subnucleus of the posterior third of the hypothalamus. It consists of, largely, histaminergic and is involved with the control of arousal, sleep and circadian rhythm. Axons of the tuberomammillary nucleus project primarily to the cerebral cortex, thalamus, basal ganglia, basal forebrain, and hypothalamus. The projections to the cerebral cortex directly increase cortical activation and arousal, and projections to acetylcholinergic neurons of the basal forebrain and dorsal pons do so indirectly, by increasing the release of acetylcholine in the cerebral cortex. [WP,unvetted]." [Wikipedia:Tuberomammillary_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "caudal magnocellular nucleus" EXACT [BIRNLEX:1271] synonym: "mammilloinfundibular nucleus" EXACT [FMA:62335] @@ -194659,6 +196548,8 @@ relationship: part_of UBERON:0002430 {source="FMA"} ! lateral hypothalamic area id: UBERON:0001937 name: lateral hypothalamic nucleus def: "The lateral hypothalamus or lateral hypothalamic area is a part of the hypothalamus. It is concerned with hunger. Damage to this area can cause reduced food intake. Stimulating the lateral hypothalamus causes a desire to eat, while stimulating the ventromedial hypothalamus causes a desire to stop eating." [Wikipedia:Lateral_hypothalamus] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "areas of Economo" RELATED [NeuroNames:1347] @@ -194683,6 +196574,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Hy [Term] id: UBERON:0001938 name: lateral mammillary nucleus +subset: human_subset +subset: mouse_subset synonym: "lateral mamillary nucleus" RELATED [NeuroNames:413] synonym: "lateral mammillary hypothalamic nucleus" EXACT [] synonym: "lateral mammillary nucleus (Gudden)" RELATED [NeuroNames:413] @@ -194717,6 +196610,8 @@ relationship: part_of UBERON:0002206 ! mammillary body [Term] id: UBERON:0001939 name: medial mammillary nucleus +subset: human_subset +subset: mouse_subset synonym: "internal mammillary nucleus" EXACT [] synonym: "medial mamillary nucleus" RELATED [BAMS:MM] synonym: "medial mammillary nucleus, body" RELATED [BAMS:MM] @@ -194749,6 +196644,8 @@ relationship: part_of UBERON:0002206 ! mammillary body [Term] id: UBERON:0001940 name: supramammillary nucleus +subset: human_subset +subset: mouse_subset synonym: "nuclei premamillaris" RELATED OMO:0003011 [NeuroNames:418] synonym: "nucleus premamillaris hypothalami" RELATED OMO:0003011 [NeuroNames:418] synonym: "premamillary nucleus" RELATED [NeuroNames:418] @@ -194775,6 +196672,8 @@ relationship: part_of UBERON:0002206 ! mammillary body [Term] id: UBERON:0001941 name: lateral habenular nucleus +subset: human_subset +subset: mouse_subset synonym: "lateral habenula" EXACT [] synonym: "lateral habenula (Nissl)" RELATED [NeuroNames:295] synonym: "LHb" BROAD OMO:0003000 [BIRNLEX:1438, NIFSTD:NeuroNames_abbrevSource] @@ -194806,6 +196705,8 @@ relationship: part_of UBERON:0001904 ! habenula id: UBERON:0001942 name: medial habenular nucleus def: "The habenular nuclei comprise a small group of nuclei that are part of the epithalamus of the diencephalon, situated at the posterior end of the thalamus, on its upper surface. The habenular nuclei are typically divided into: lateral habenular nucleus medial habenular nucleus The pineal gland is attached to the brain in this region. Nerve impulses from the habenular nuclei are transmitted to the septal nuclei via the stria medullaris, which is found on the medial surface of the thalamus." [Wikipedia:Habenular_nuclei] +subset: human_subset +subset: mouse_subset synonym: "ganglion intercrurale" RELATED OMO:0003011 [NeuroNames:294] synonym: "ganglion interpedunculare" RELATED OMO:0003011 [NeuroNames:294] synonym: "medial habenula" EXACT [] @@ -194844,6 +196745,8 @@ def: "Ventral part of the midbrain, separated from the hindbrain by the isthmus[ comment: 'tegmentum' is used generically for the ventral part of the brainstem (ISBN:0471888893). We use the label 'midbrain tegmentum' to denote the midbrain structure. In NIFSTD tegmentum is a composite structure and there is a separate class for midbrain tegmentum and pontine tegmentum subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -194886,6 +196789,8 @@ id: UBERON:0001944 name: pretectal region def: "Nuclear complex between dorsal thalamus and optic tectum whose nuclei receive afferents primarily from the retina and the optic tectum and are involved in modulating motor behavior in response to visual input." [https://github.com/obophenotype/uberon/issues/361, ISBN:0471888893] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -194953,6 +196858,8 @@ def: "Part of the midbrain tecturm consisting of paired bodies that sit caudal t comment: ). In hagfish, lamprey, and shark it is a relatively small structure, but in teleost fish it is greatly expanded, in some cases becoming the largest structure in the brain. (See the adjoining drawing of a codfish brain.) In amphibians, reptiles, and especially birds it is also a very significant component, but in mammals it is dwarfed by the massive expansion of the cerebral cortex. subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -195020,6 +196927,8 @@ name: inferior colliculus def: "Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum. According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM)." [BIRNLEX:806] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "caudal colliculus" EXACT [] @@ -195062,6 +196971,8 @@ id: UBERON:0001947 name: red nucleus def: "Large round nucleus located in the midbrain tegmentum, consisting of a magnocellular and parvicellular portion in most species studied." [BIRNLEX:1478] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "nucleus rotundus subthalamo-peduncularis" RELATED OMO:0003011 [NeuroNames:505] @@ -195118,6 +197029,8 @@ property_value: function_notes "in animals without a significant corticospinal t id: UBERON:0001948 name: regional part of spinal cord def: "A multi-tissue structure that is part of a spinal cord." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "spinal cord part" RELATED [] xref: BIRNLEX:1496 @@ -195134,6 +197047,8 @@ relationship: part_of UBERON:0002240 ! spinal cord id: UBERON:0001949 name: gingival epithelium def: "A stratified squamous epithelium consisting of a basal layer; it is keratinized or parakeratinized[BTO]." [BTO:0004998] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of gingiva" EXACT [OBOL:automatic] synonym: "epithelium of gingiva" EXACT [] synonym: "gingiva epithelial tissue" EXACT [OBOL:automatic] @@ -195155,6 +197070,8 @@ property_value: taxon_notes "In humans: 15% orthokeratinized, 75% parakeratinize id: UBERON:0001950 name: neocortex def: "An area of cerebral cortex defined on the basis of cytoarchitecture that have six layers. Starting from the cortical surface the layers are: molecular layer (I), external granular layer (II), external pyramidal layer (III), internal granular layer (IV), internal pyramidal layer (V), and multiform layer (VI). Neocortex is most prominent in the frontal lobe, the parietal lobe, the temporal lobe and the occipital lobe, less so in the cingulate gyrus, the parahippocampal gyrus and the insula. It is composed of two subdivisions: true isocortex and proisocortex (Carpenter-83)(NN)." [BIRNLEX:2547, OldNeuroNames:754] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cerebral neocortex" EXACT [] @@ -195199,6 +197116,8 @@ id: UBERON:0001951 name: epithelium of nasopharynx alt_id: UBERON:0003237 def: "An epithelium that is part of a nasopharynx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "epithelial tissue of nasopharynx" EXACT [OBOL:automatic] synonym: "epithelial tissue of rhinopharynx" EXACT [OBOL:automatic] @@ -195232,6 +197151,8 @@ relationship: part_of UBERON:0003929 {source="EHDAA2"} ! digestive tract epithel id: UBERON:0001952 name: epithelium of oropharynx def: "An epithelium that is part of a oropharynx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "oropharyngeal epithelium" EXACT [] synonym: "oropharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "oropharynx epithelium" EXACT [MA:0001605] @@ -195253,6 +197174,8 @@ property_value: external_ontology_notes "Composition varies with species and tim id: UBERON:0001953 name: presubiculum def: "A modified six-layered cortex between the subiculum and the main part of the parahippocampal gyrus." [http://medical-dictionary.thefreedictionary.com/presubiculum] +subset: human_subset +subset: mouse_subset synonym: "area 27 of Brodmann" RELATED INCONSISTENT [FMA:62486] synonym: "praesubiculum" RELATED OMO:0003011 [NeuroNames:167] synonym: "presubicular cortex (presubiculum)" EXACT [DHBA:10315] @@ -195288,6 +197211,8 @@ alt_id: UBERON:0003940 alt_id: UBERON:0004165 def: "A part of the brain consisting of a three layered cortex located in the forebrain bordering the medial surface of the lateral ventricle. The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum." [BIRNLEX:721] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ammon gyrus" EXACT [GO:0021541] @@ -195344,6 +197269,8 @@ id: UBERON:0001955 name: epithelium of respiratory bronchiole def: "An epithelium that is part of a respiratory bronchiole [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "bronchiolus respiratorius epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchiolus respiratorius epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of bronchiolus respiratorius" EXACT [OBOL:automatic] @@ -195368,6 +197295,8 @@ id: UBERON:0001956 name: cartilage of bronchus def: "The hyaline cartilaginous structures that support the bronchi, present as irregular rings in the larger bronchi (and not as regular as in the trachea), and as small plates and islands in the smaller bronchi; as the branching continues through the bronchial tree, the amount of hyaline cartilage in the walls decreases until it is absent in the smallest bronchioles[MP]." [MP:0010988] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bronchi cartilage" EXACT [OBOL:automatic] synonym: "bronchial cartilage" EXACT [] @@ -195397,6 +197326,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0001957 name: submucosa of bronchus def: "A submucosa that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchi submucosa" EXACT [OBOL:automatic] synonym: "bronchial submucosa" EXACT [] synonym: "bronchial trunk submucosa" EXACT [OBOL:automatic] @@ -195423,6 +197354,8 @@ id: UBERON:0001958 name: terminal bronchiole epithelium def: "An epithelium that lines a terminal bronchiole." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "bronchiolus terminalis epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchiolus terminalis epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of bronchiolus terminalis" EXACT [OBOL:automatic] @@ -195451,6 +197384,8 @@ id: UBERON:0001959 name: white pulp of spleen def: "The parenchymatous tissue of the spleen that surrounds splenic blood vessels, consists of compact masses of lymphatic cells and is where foreign material removed from the blood is used to initiate an immune reaction that results in the production of antibodies." [MGI:csmith, MP:0002357] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "noduli lymphoidei splenici" RELATED OMO:0003011 [Wikipedia:White_pulp] @@ -195477,6 +197412,8 @@ id: UBERON:0001960 name: periarterial lymphatic sheath def: "The area of the spleen in which T cells surround the central arteriole." [MP:0002358] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "PALS" EXACT OMO:0003000 [MP:0002358] synonym: "periarterial lymphoid sheath" EXACT [] @@ -195502,6 +197439,8 @@ id: UBERON:0001961 name: mucosa-associated lymphoid tissue def: "Diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]." [Wikipedia:Mucosa-associated_lymphoid_tissue] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "epithelio-lymphoid tissue" EXACT [FMA:62819] @@ -195527,6 +197466,8 @@ id: UBERON:0001962 name: gut-associated lymphoid tissue def: "Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]." [Wikipedia:Gut-associated_lymphoid_tissue] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "GALT" RELATED [] @@ -195549,6 +197490,8 @@ id: UBERON:0001963 name: bronchial-associated lymphoid tissue def: "A diffuse collection of lymphpoid cells that participate in airway immune responses." [ISBN:0123813611] comment: Lymphoid tissue associated with airways in mice has functional similarities to human BALT[ISBN:0123813611] Notes: FMA classifies this as organized, not diffuse +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "BALT" RELATED [] synonym: "bronchus associated lymphoid tissue" EXACT [] @@ -195568,6 +197511,8 @@ id: UBERON:0001964 name: least splanchnic nerve def: "A thoracic nerve that nerve travels into the abdomen, where its fibers synapse in the renal ganglia." [Wikipedia:Thoracic_splanchnic_nerves#cite_note-4] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: uberon_slim synonym: "least thoracic splanchnic nerve" EXACT [FMA:6283] @@ -195592,6 +197537,8 @@ property_value: external_ontology_notes "in MA this is part of the kidney but th id: UBERON:0001965 name: substantia nigra pars compacta def: "Regional part of substantia nigra consisting of a densely packed region of cells, more or less dorsal to the pars reticulata, but extending into the pars reticulata in some species. The dominant neurotransmitter used by pars compacta neurons is dopamine. Pars compacta neurons are pigmented in many species (MM)." [BIRNLEX:990] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "compact part of substantia nigra" EXACT [] @@ -195634,6 +197581,8 @@ id: UBERON:0001966 name: substantia nigra pars reticulata def: "Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM)." [BIRNLEX:968] comment: the cells of pars reticulata bear a strong structural and functional resemblance to the inner segment of the globus pallidus +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "nucleus substantiae nigrae, pars compacta" RELATED OMO:0003011 [NeuroNames:537] @@ -195685,6 +197634,8 @@ id: UBERON:0001967 name: reticular lamina of epithelium def: "A thin extracellular layer that sometimes lies below the basal lamina, is composed chiefly of collagenous fibers, and serves to anchor the basal lamina to underlying connective tissue." [http://mw1.merriam-webster.com/medical/reticular%20lamina] comment: See https://github.com/obophenotype/uberon/issues/1436 +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "fibroreticular lamina" EXACT [FMA:62924] synonym: "lamina fibroreticularis" EXACT OMO:0003011 [FMA:62924] @@ -195701,6 +197652,8 @@ property_value: curator_notes "this class represents a continuous sheet of retic id: UBERON:0001968 name: semen def: "Organism substance that is composed of sperm cells suspended in seminal fluid." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ejaculate" RELATED [] @@ -195730,6 +197683,8 @@ id: UBERON:0001969 name: blood plasma def: "The liquid component of blood, in which erythrocytes are suspended." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "blood plasm" EXACT [] @@ -195764,6 +197719,8 @@ relationship: surrounds CL:0000232 ! erythrocyte id: UBERON:0001970 name: bile def: "Vital aqueous secretion of the liver that is formed by hepatocytes and modified down stream by absorptive and secretory properties of the bile duct epithelium." [DOI:10.1002/cphy.c120027, Wikipedia:Bile] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "fel" RELATED [BTO:0000121] @@ -195801,6 +197758,8 @@ property_value: taxon_notes "In many species, bile is stored in the gallbladder [Term] id: UBERON:0001971 name: gastric juice +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "stomach secretion" EXACT [] @@ -195823,6 +197782,8 @@ relationship: produced_by UBERON:0011953 ! stomach glandular region id: UBERON:0001972 name: submucosa of esophagus def: "A submucosa that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "esophageal submucosa" EXACT [] synonym: "esophagus submucosa" EXACT [] synonym: "gullet submucosa" EXACT [OBOL:automatic] @@ -195851,6 +197812,8 @@ relationship: part_of UBERON:0001096 ! wall of esophagus id: UBERON:0001974 name: lamina propria of esophagus def: "A lamina propria that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "esophageal lamina propria" RELATED [EMAPA:26987] synonym: "esophagus lamina propria" EXACT [] synonym: "esophagus lamina propria mucosa" EXACT [OBOL:automatic] @@ -195884,6 +197847,8 @@ relationship: part_of UBERON:0002469 {source="FMA"} ! esophagus mucosa id: UBERON:0001975 name: serosa of esophagus def: "A serous membrane that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "esophagus serosa" EXACT [] synonym: "esophagus serous membrane" EXACT [OBOL:automatic] synonym: "gullet serosa" EXACT [OBOL:automatic] @@ -195912,6 +197877,8 @@ id: UBERON:0001976 name: epithelium of esophagus def: "The epithelial layer that lines the luminal space of the esophagus." [ISBN:0-683-40008-8, MP:0000468] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -195952,6 +197919,8 @@ property_value: external_definition "Simple columnar epithelium that lines the e id: UBERON:0001977 name: blood serum def: "The portion of blood plasma that excludes clotting factors." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Serum_(blood)] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "serum" EXACT [] @@ -195974,6 +197943,8 @@ relationship: part_of UBERON:0001969 ! blood plasma id: UBERON:0001978 name: parenchyma of pancreas subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "pancreas parenchyma" EXACT [] synonym: "pancreatic parenchyma" EXACT [] xref: EMAPA:32925 @@ -195992,6 +197963,8 @@ id: UBERON:0001979 name: venule def: "One of the minute vessels that collect deoxygenated blood from the capillary plexuses returns it to the veins." [MESH:A07.231.432.952, MP:0004125] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -196021,6 +197994,8 @@ property_value: external_definition "Multi-tissue structure part of the blood va id: UBERON:0001980 name: arteriole def: "The smallest division of the artery located between the muscular arteries and the capillaries[GO]." [GO:0014830] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -196056,6 +198031,8 @@ name: blood vessel def: "A vessel through which blood circulates in the body." [BTO:0001102, Wikipedia:Blood_vessel] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -196112,6 +198089,8 @@ name: capillary def: "Any of the smallest blood vessels connecting arterioles with venules." [https://github.com/obophenotype/uberon/issues/137, ISBN:0073040584, Wikipedia:Capillary] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -196152,6 +198131,8 @@ property_value: structure_notes "capillaries lack tunica media and tunica advent id: UBERON:0001983 name: crypt of Lieberkuhn def: "The tubular intestinal glands found in the mucosal membranes." [https://github.com/obophenotype/uberon/issues/213, ISBN:0-683-40008-8, MP:0000490] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "crypt of Lieberkuhn" EXACT [] @@ -196188,6 +198169,8 @@ property_value: taxon_notes "Most fish lack intestinal glands that extend into t id: UBERON:0001984 name: crypt of Lieberkuhn of large intestine def: "A crypt of Lieberkühn that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "intestinal gland of large intestine" EXACT [OBOL:automatic] synonym: "large intestinal crypt of Lieberkuhn" EXACT [] @@ -196212,6 +198195,8 @@ id: UBERON:0001985 name: corneal endothelium def: "A monolayer of specialized, flattened, mitochondria-rich cells that lines the posterior surface of the cornea and faces the anterior chamber of the eye[WP]." [Wikipedia:Corneal_endothelium] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -196249,6 +198234,8 @@ def: "A layer of epithelium that lines the heart, blood vessels (endothelium, va comment: The term 'endothelium' has been either restricted to the continuous cell layer of the vertebrates, as we are assuming here, or applied to all the cells able to adhere to the luminal surface of the vascular basement membrane (Casley-Smith 1980) subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: BTO:0000393 xref: CALOHA:TS-0278 @@ -196277,6 +198264,8 @@ def: "Organ of metabolic interchange between fetus and mother, partly of embryon comment: Marsupials possess only a rudimentary yolk-type placenta, with reduced nutrient and oxygen exchanging capabilities. subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -196319,6 +198308,8 @@ property_value: taxon_notes "Eutherians: In eutherians, the chorioallantoic memb id: UBERON:0001988 name: feces def: "Portion of semisolid bodily waste discharged through the anus[MW,modified]." [http://www.merriam-webster.com/dictionary/feces, Wikipedia:Feces] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cow dung" NARROW [Wikipedia:Cow_dung] @@ -196374,6 +198365,8 @@ name: superior cervical ganglion def: "Trunk ganglion which is bilaterally paired and located at the anterior end of the sympathetic ganglion chain." [Wikipedia:Superior_cervical_ganglion, ZFIN:curator] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -196407,6 +198400,8 @@ id: UBERON:0001990 name: middle cervical ganglion def: "The small ganglion located at the level of the cricoid cartilage of the laryngeal wall." [ISBN:0-683-40008-8, MP:0001016] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ganglion cervicale medium" RELATED OMO:0003011 [BTO:0000359, Wikipedia:Middle_cervical_ganglion] @@ -196431,6 +198426,8 @@ id: UBERON:0001991 name: cervical ganglion def: "The cervical ganglia are paravertebral ganglia of the sympathetic nervous system. They consist of three paravertebral ganglia: superior cervical ganglion middle cervical ganglion inferior cervical ganglion. The inferior ganglion may be fused with the first thoracic ganglion to form a single structure, the stellate ganglion. Nerves emerging from cervical sympathetic ganglia contribute to the cardiac plexus, among other things. [WP,unvetted]." [Wikipedia:Cervical_ganglion] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "cervical sympathetic ganglion" EXACT [] xref: BTO:0000113 @@ -196447,6 +198444,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gr id: UBERON:0001992 name: papillary layer of dermis def: "The upper layer of the dermis beneath the epidermis, composed of dense irregular connective tissue[ncit,modified]." [ncithesaurus:Papillary_Dermis] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "corpus papillary" EXACT [MP:0009545] @@ -196483,6 +198482,8 @@ property_value: external_definition "Dense irregular connective tissue of the sk id: UBERON:0001993 name: reticular layer of dermis def: "The thicker, deeper layer of the dermis, comprised of criss-crossing collagen fibers that form a strong elastic network and also containing blood and lymph vessels, nerves and nerve endings, and hair follicles." [ISBN:0-683-40008-8, MP:0005081] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "dermal reticular layer" RELATED [EMAPA:35283] @@ -196511,6 +198512,8 @@ relationship: part_of UBERON:0008877 {source="FMA"} ! epidermal-dermal junction id: UBERON:0001994 name: hyaline cartilage tissue def: "Cartilage tissue primarily composed of type II collagen (thin fibrils) and a glassy appearance." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000094] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "chondroid cartilage" RELATED [http://orcid.org/0000-0002-6601-2165] @@ -196537,6 +198540,8 @@ id: UBERON:0001995 name: fibrocartilage def: "Cartilage tissue intermediate between hyaline cartilage and dense connective tissue; contains of abundant collagen fibers; chondrocytes often arranged in columns." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000103] comment: The white fibrocartilages admit of arrangement into four groups-interarticular, connecting, circumferential, and stratiform -- WP. EDITOR NOTE: TODO add mineralized +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "fibrocartilage tissue" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -196564,6 +198569,8 @@ property_value: has_relational_adjective "fibrocartilaginous" xsd:string id: UBERON:0001996 name: elastic cartilage tissue def: "Cartilage tissue that is flexible and contains abundant elastic fibers." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000091] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "elastic cartilage" EXACT [MA:0000107] @@ -196596,6 +198603,8 @@ alt_id: UBERON:0004853 def: "A sensory epithelium inside the nasal cavity that is responsible for detecting odors[WP]." [Wikipedia:Olfactory_epithelium] comment: Genes: V1Rs, Trpc2 present in lamprey subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -196651,6 +198660,8 @@ property_value: external_definition "Sensory lining of the medial wall, roof and id: UBERON:0001998 name: sternocostal joint def: "Arthrodial joints, with the exception of the first, in which the cartilage is directly united with the sternum, and which is, therefore, a synarthrodial articulation." [Wikipedia:Sternocostal_joints] +subset: human_subset +subset: mouse_subset synonym: "articulatio sternocostalis" EXACT [FMA:7954] synonym: "articulationes sternocostales" RELATED OMO:0003011 [Wikipedia:Sternocostal_joints] synonym: "costo sternal joint" EXACT [] @@ -196676,6 +198687,8 @@ property_value: external_ontology_notes "FMA has FMA:72323 'Costosternal joint', id: UBERON:0001999 name: iliopsoas def: "Anatomical cluster consisting of the iliacus and the psoas major[WP]." [Wikipedia:Iliopsoas] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "Hyrtl's muscle" EXACT [] synonym: "ilio-psoas" RELATED [VHOG:0001005] @@ -196710,6 +198723,8 @@ id: UBERON:0002000 name: gluteal muscle def: "On of the muscles that make up the buttocks: the gluteus maximus muscle, gluteus medius muscle and gluteus minimus muscle." [Wikipedia:Gluteal_muscles] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "gluteus" RELATED [BTO:0000531] @@ -196736,6 +198751,8 @@ property_value: has_relational_adjective "gluteal" xsd:string id: UBERON:0002001 name: joint of rib def: "Any joint that connects a rib to another structure (or another rib). Examples: costochondral, costovertebral, interchondral, sternocostal joints." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "rib joint" EXACT [] xref: FMA_RETIRED:64994 xref: MA:0001508 @@ -196752,6 +198769,8 @@ relationship: part_of UBERON:0014478 {source="cjm"} ! rib skeletal system id: UBERON:0002002 name: interchondral joint def: "Interchondral Articulations (articulations of the cartilages of the ribs with each other). The contiguous borders of the sixth, seventh, and eighth, and sometimes those of the ninth and tenth, costal cartilages articulate with each other by small, smooth, oblong facets. Each articulation is enclosed in a thin articular capsule, lined by synovial membrane and strengthened laterally and medially by ligamentous fibers which pass from one cartilage to the other. Sometimes the fifth costal cartilages, more rarely the ninth and tenth, articulate by their lower borders with the adjoining cartilages by small oval facets; more frequently the connection is by a few ligamentous fibers." [Wikipedia:Interchondral_articulations] +subset: human_subset +subset: mouse_subset synonym: "articulatio interchondralis" EXACT [FMA:7955] synonym: "articulationes interchondrales" EXACT OMO:0003011 [FMA:71378, FMA:TA] synonym: "interchondral articulation" EXACT [Wikipedia:Interchondral_articulations] @@ -196790,6 +198809,8 @@ replaced_by: UBERON:0001021 [Term] id: UBERON:0002004 name: trunk of sciatic nerve +subset: human_subset +subset: mouse_subset synonym: "sciatic nerve trunk" EXACT [] synonym: "sciatic neural trunk" EXACT [] xref: FMA:65507 @@ -196804,6 +198825,8 @@ id: UBERON:0002005 name: enteric nervous system def: "The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation[GO]." [GO:0048484] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -196838,6 +198861,8 @@ id: UBERON:0002006 name: cortex of lymph node def: "Peripheral portion of the lymph node, underneath the capsule[WP]." [Wikipedia:Cortex_of_lymph_node] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cortex nodi lymphoidei" RELATED OMO:0003011 [Wikipedia:Cortex_of_lymph_node] @@ -196861,6 +198886,8 @@ id: UBERON:0002007 name: medulla of lymph node def: "The medullary portion of the lymph node, which contains large blood vessels, sinuses and medullary cords that contain antibody-secreting plasma cells." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Lymph_node#Medulla] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "lymph node medulla" EXACT [] @@ -196882,6 +198909,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l id: UBERON:0002008 name: cardiac nerve plexus def: "A plexus of nerves situated at the base of the heart that innervate the heart." [Wikipedia:Cardiac_plexus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "autonomic nerve plexus of heart" EXACT [OBOL:automatic] synonym: "autonomic plexus of heart" EXACT [OBOL:automatic] @@ -196908,6 +198937,8 @@ id: UBERON:0002009 name: pulmonary nerve plexus def: "The pulmonary plexus is an autonomic plexus formed from pulmonary branches of vagus nerve and the sympathetic trunk that supplies the Bronchial tree. [WP,modified]." [Wikipedia:Pulmonary_plexus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "plexus pulmonalis" EXACT OMO:0003011 [FMA:6629, FMA:TA] synonym: "plexus pulmonalis" RELATED OMO:0003011 [Wikipedia:Pulmonary_plexus] @@ -196933,6 +198964,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002010 name: celiac nerve plexus def: "A complex network of nerves located in the abdomen behind the stomach. The celiac plexus is located near where the celiac trunk, superior mesenteric artery, and renal arteries branch from the abdominal aorta. It is behind the stomach and the omental bursa and in front of the crura of the diaphragm, on the level of the first lumbar vertebra, L1. The plexus is formed (in part) by the greater and lesser splanchnic nerves of both sides, and also parts of the right vagus nerve. The celiac plexus proper consists of the celiac ganglia with a network of interconnecting fibers. The aorticorenal ganglia are often considered to be part of the celiac ganglia, and thus, part of the plexus. [WP,unvetted]." [Wikipedia:Celiac_plexus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "celiac plexus" EXACT [] synonym: "coeliac nerve plexus" RELATED [] @@ -196957,6 +198990,8 @@ id: UBERON:0002011 name: thoracodorsal artery def: "The thoracodorsal artery is a branch of the subscapular artery. It travels inferiorly with the thoracodorsal nerve and supplies the latissimus dorsi. [WP,unvetted]." [Wikipedia:Thoracodorsal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria thoracodorsalis" RELATED OMO:0003011 [Wikipedia:Thoracodorsal_artery] xref: EMAPA:37129 {source="MA:th"} @@ -196980,6 +199015,8 @@ name: pulmonary artery def: "An artery that carries deoxygenated blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood.." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Pulmonary_artery] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "arteria pulmonalis" RELATED OMO:0003011 [Wikipedia:Pulmonary_artery] @@ -197032,6 +199069,8 @@ id: UBERON:0002013 name: superior hypogastric nerve plexus def: "The superior hypogastric plexus (in older texts, hypogastric plexus or presacral nerve) is a plexus of nerves situated on the vertebral bodies below the bifurcation of the aorta. [WP,unvetted]." [Wikipedia:Superior_hypogastric_plexus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "hypogastric plexus" RELATED [] synonym: "nervus presacralis" EXACT OMO:0003011 [FMA:6642, FMA:TA] @@ -197056,6 +199095,8 @@ id: UBERON:0002014 name: inferior hypogastric nerve plexus def: "The inferior hypogastric plexus (pelvic plexus in some texts) is a plexus of nerves that supplies the viscera of the pelvic cavity. The inferior hypogastric plexus is a paired structure, with each situated on the side of the rectum in the male, and at the sides of the rectum and vagina in the female. [WP,unvetted]." [Wikipedia:Inferior_hypogastric_plexus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "inferior hypogastric plexus" EXACT [] synonym: "pelvic nerve plexus" EXACT [] @@ -197083,6 +199124,8 @@ id: UBERON:0002015 name: kidney capsule def: "The tough fibrous layer surrounding the kidney which is covered in a thick layer of perirenal adipose tissue that functions to provide some protection from trauma and damage." [MGI:anna, MP:0011383] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "capsula fibrosa renis" EXACT OMO:0003011 [FMA:66610, FMA:TA] @@ -197118,6 +199161,8 @@ id: UBERON:0002016 name: pulmonary vein def: "Pulmonary veins are blood vessels that transport blood from the lungs to the heart[GO]." [GO:0060577] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "pulmonary venous tree organ part" EXACT [] @@ -197163,6 +199208,8 @@ id: UBERON:0002017 name: portal vein def: "A vein that conducts blood from the digestive organs, spleen, pancreas, and gallbladder to the liver[BTO]." [BTO:0001792] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "portal venous tree organ part" EXACT [FMA:66645] @@ -197191,6 +199238,8 @@ id: UBERON:0002018 name: synovial membrane of synovial joint def: "Soft tissue that lines the non-cartilaginous surfaces within joints with cavities (synovial joints)." [Wikipedia:Synovial_membrane] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "membrana synovialis (capsula articularis)" EXACT OMO:0003011 [FMA:9865, FMA:TA] synonym: "membrana synovialis capsulae articularis" EXACT OMO:0003011 [Wikipedia:Synovial_membrane] @@ -197234,6 +199283,8 @@ property_value: homology_notes "Phylogenetically, synovium is one of the newer a id: UBERON:0002019 name: accessory XI nerve def: "A cranial nerve that originates from neurons in the medulla and in the cervical spinal cord." [BIRNLEX:812, http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "accessory nerve" EXACT [] @@ -197294,6 +199345,8 @@ property_value: taxon_notes "In mice, the spinal branch of this motor nerve inne id: UBERON:0002020 name: gray matter def: "A nervous system structure composed primarily of nerve cell bodies (somas). May also include dendrites and the initial unmyelinated portion of axons." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Gray_matter] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -197334,6 +199387,8 @@ def: "Posterior part of the cerebral hemisphere (MSH)." [BIRNLEX:1136] comment: In some species, parcellations of lobes are not well defined or at all, and therefore the occipital lobe could refer to the most posterior mammalian cerebral cortex. subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "lobus occipitalis" RELATED OMO:0003011 [Wikipedia:Occipital_lobe] @@ -197370,6 +199425,8 @@ name: insula alt_id: UBERON:0023846 def: "Gray matter of the insular region of the neocortex. In gyrencephalic animals, it is part of the insular lobe and lies in the depths of the lateral fissure and covered by portions of the frontal, parietal and temporal lobes. It includes Brodmann areas 13-16." [BIRNLEX:1117] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "central lobe" EXACT [FMA:67329] synonym: "cortex insularis" RELATED OMO:0003011 [NeuroNames:111] @@ -197415,6 +199472,8 @@ id: UBERON:0002023 name: claustrum of brain def: "One of the four basal ganglia in each cerebral hemisphere that consists of a thin lamina of gray matter between the lentiform nucleus and the insula[BTO]. The claustrum, which is suspected to be present in all mammals, is a fairly thin (fraction of 1 mm to multiple mms) vertical curved sheet of subcortical gray matter oriented sagittally between the white matter tracts of the external capsule and extreme capsule. The claustrum is lateral to the putamen and medial to the insular cortex and is considered by some sources to be part of the basal ganglia. There are lateral and medial tracts connecting to many cortices and perhaps to the hippocampus, the amygdala, and the caudate nucleus (connections with subcortical centers are a matter of debate)[WP]." [BTO:0004292, Wikipedia:Claustrum] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "claustrum" EXACT [MA:0000888] synonym: "claustrum (Burdach)" RELATED [NeuroNames:252] @@ -197457,6 +199516,8 @@ id: UBERON:0002024 name: internal carotid nerve plexus def: "The internal carotid plexus (carotid plexus) is situated on the lateral side of the internal carotid artery, and in the plexus there occasionally exists a small gangliform swelling, the carotid ganglion, on the under surface of the artery. Postganglionic sympathetic fibres ascend from the superior cervical ganglion, along the walls of the internal carotid artery, to enter the internal carotid plexus. These fibres then distribute to deep structures, which include the levator palpebrae superioris and pupillary dilator muscles. Some of the fibres from the internal carotid plexus converge to form the deep petrosal nerve. The internal carotid plexus communicates with the semilunar ganglion, the abducent nerve, and the sphenopalatine ganglion; it distributes filaments to the wall of the carotid artery, and also communicates with the tympanic branch of the glossopharyngeal nerve. [WP,unvetted]." [Wikipedia:Internal_carotid_nerve_plexus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "internal carotid plexus" EXACT [] synonym: "plexus caroticus internus" EXACT OMO:0003011 [FMA:67533, FMA:TA] @@ -197476,6 +199537,8 @@ id: UBERON:0002025 name: stratum basale of epidermis def: "The deepest layer of the epidermis, which is composed of dividing stem cells and anchoring cells." [ISBN:0-683-40008-8, MP:0001231] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "basal cell layer of epidermis" EXACT [FMA:67540] @@ -197527,6 +199590,8 @@ id: UBERON:0002026 name: stratum spinosum of epidermis def: "The layer of polyhedral cells in the epidermis found between the stratum granulosum and stratum basale; shrinkage and adhesion of these cells gives a spiny or prickly appearance." [ISBN:0-683-40008-8, MP:0001236] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epidermis prickle cell layer" RELATED [] synonym: "epidermis stratum spinosum" EXACT [] @@ -197561,6 +199626,8 @@ id: UBERON:0002027 name: stratum corneum of epidermis def: "The outer layer of the epidermis, consisting of several layers of flat keratinized non-nucleated cells." [ISBN:0-683-40008-8, MP:0001240] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cornified layer" EXACT [] synonym: "epidermis stratum corneum" EXACT [] @@ -197598,6 +199665,8 @@ name: hindbrain def: "The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata (From: Neuroanatomy of the Zebrafish Brain)[ZFA]. Organ component of neuraxis that has as its parts the pons, cerebellum and medulla oblongata[FMA]." [Wikipedia:Rhombencephalon, ZFA:0000029, ZFIN:curator] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -197653,6 +199722,8 @@ property_value: homology_notes "Fine structural, computerized three-dimensional id: UBERON:0002029 name: epithelium of gall bladder def: "The simple columnar epithelial lining of the gall bladder." [MP:0009492] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "biliary epithelium" RELATED [] synonym: "epithelial tissue of gall bladder" EXACT [OBOL:automatic] @@ -197682,6 +199753,8 @@ id: UBERON:0002030 name: nipple def: "Projection of skin containing the outlets for 15-20 lactiferous ducts arranged cylindrically around the tip." [FMA:67771, Wikipedia:Nipple] comment: Nipple being part_of mammary gland is due to a practical modelling in uberon that treats mammary gland as including adnexa. A GCI asserts that nipple is part of the breast in humans. For discussion of this, please refer to https://github.com/obophenotype/uberon/issues/1873. +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "papilla mammae" EXACT [MP:0009723] @@ -197719,6 +199792,8 @@ id: UBERON:0002031 name: epithelium of bronchus def: "An epithelium that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bronchi epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchi epithelium" EXACT [OBOL:automatic] @@ -197751,6 +199826,8 @@ relationship: part_of UBERON:0002185 ! bronchus id: UBERON:0002032 name: areola def: "Subdivision of breast which consists of skin, connective tissue and smooth muscle bundle and modified sebaceous glands and which surrounds the nipple." [FMA:67796] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "areola mammae" RELATED OMO:0003011 [Wikipedia:Areola] @@ -197773,6 +199850,8 @@ id: UBERON:0002033 name: arrector muscle of hair def: "A tiny smooth muscle that connects the hair follicle with the dermis." [DOI:10.1016/j.cub.2008.12.005] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "arectores pilorum" RELATED [BTO:0005132] @@ -197804,6 +199883,8 @@ id: UBERON:0002034 name: suprachiasmatic nucleus def: "* An ovoid densely packed collection of small cells of the anterior hypothalamus lying close to the midline in a shallow impression of the optic chiasm. (MSH) * small group of nerve cell bodies in the supraoptic region of the hypothalamus, just above the optic chiasm; influences rhythmic aspects of hypothalamic functions in many vertebrate species. (CSP)." [BIRNLEX:1325] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -197858,6 +199939,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Hy id: UBERON:0002035 name: medial preoptic nucleus def: "The medial preoptic nucleus is bounded laterally by the lateral preoptic nucleus, and medially by the preoptic periventricular nucleus. It releases gonadotropin-releasing hormone, controls copulation in males, and is larger in males than in females.[WP,unvetted]." [Wikipedia:Medial_preoptic_nucleus#Medial_preoptic_nucleus, Wikipedia:Sexually_dimorphic_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "area praeoptica medialis" RELATED OMO:0003011 [NeuroNames:380] synonym: "area preopticus medialis" RELATED OMO:0003011 [NeuroNames:380] @@ -197894,6 +199977,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Hy id: UBERON:0002036 name: striated muscle tissue def: "Muscle tissue that contains fibers that are divided by transverse bands into striations." [CL:0000737, GOC:dph, GOC:mtg_muscle] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "striated muscle" EXACT [] @@ -197921,6 +200006,8 @@ name: cerebellum def: "Part of the metencephalon that lies in the posterior cranial fossa behind the brain stem. It is concerned with the coordination of movement[MESH]. A large dorsally projecting part of the brain concerned especially with the coordination of muscles and the maintenance of bodily equilibrium, situated between the brain stem and the back of the cerebrum , and formed in humans of two lateral lobes and a median lobe[BTO]. Brain structure derived from the anterior hindbrain, and perhaps including posterior midbrain. The cerebellum plays a role in somatic motor function, the control of muscle tone, and balance[ZFA]." [BTO:0000232, https://sourceforge.net/tracker/index.php?func=detail&aid=3291162&group_id=76834&atid=1205376, ISBN:3764351209, MESH:A08.186.211.132.810.428.200, ZFA:0000100] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -197985,6 +200072,8 @@ name: substantia nigra def: "Predominantly gray matter midbrain structure lying dorsal to the crus cerebri and ventral to the midbrain tegmentum. It is divided into a dorsal, cellularly compact region known as the pars compacta and a more ventrally located, containing more loosely packed cells, the pars reticulata. The most lateral region of the reticulata is identified as the pars lateralis (MM)." [BIRNLEX:789] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "nucleus of basis pedunculi" EXACT [] @@ -198034,6 +200123,8 @@ property_value: homology_notes "(...) the substantia nigra first appears in rept id: UBERON:0002039 name: inferior phrenic vein def: "The Inferior Phrenic Veins drain the diaphragm and follow the course of the inferior phrenic arteries; the right ends in the inferior vena cava; the left is often represented by two branches, one of which ends in the left renal or suprarenal vein, while the other passes in front of the esophageal hiatus in the diaphragm and opens into the inferior vena cava. [WP,unvetted]." [Wikipedia:Inferior_phrenic_vein] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "venae phrenicae inferiores" RELATED OMO:0003011 [Wikipedia:Inferior_phrenic_vein] xref: EMAPA:37157 {source="MA:th"} @@ -198050,6 +200141,8 @@ name: bronchial artery def: "A systemic artery that supplies the lung with with oxygenated blood." [UBERON:cjm, Wikipedia:Bronchial_artery] comment: Although there is much variation, there are usually two bronchial arteries that run to the left lung, and one to the right lung. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteriae bronchiales" RELATED OMO:0003011 [Wikipedia:Bronchial_artery] synonym: "bronchial arterial tree" EXACT [] @@ -198078,6 +200171,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gr [Term] id: UBERON:0002041 name: terminal bronchus +subset: human_subset +subset: mouse_subset subset: organ_slim xref: EMAPA:37763 {source="MA:th"} xref: FMA:68416 @@ -198089,6 +200184,8 @@ id: UBERON:0002042 name: lymphatic vessel endothelium def: "An endothelium that is part of a lymphatic vessel [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "endothelium of lymph vessel" EXACT [OBOL:automatic] @@ -198120,6 +200217,8 @@ id: UBERON:0002043 name: dorsal raphe nucleus def: "A large raphe nucleus extending from the anterior part of the pons through the mesencephalon; its neurons are serotoninergic[NIF]. The dorsal raphe nucleus is a part of the raphe nucleus and consists of rostral and caudal subdivisions. The rostral aspect of the dorsal raphe is further divided into interfascicular, ventral, ventrolateral and dorsal subnuclei. The projections of the dorsal raphe have been found to vary topographically, and thus the subnuclei differ in their projections. An increased number of cells in the lateral aspects of the dorsal raphe is characteristic of humans and other primates. [WP,unvetted]." [BIRNLEX:982, https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3248146&group_id=36855, Wikipedia:Dorsal_raphe_nucleus] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "cell group b7" EXACT [FMA:68462] @@ -198154,7 +200253,6 @@ xref: neuronames:512 {source="BIRNLEX:982"} xref: TAO:0000366 xref: UMLS:C0175392 {source="BIRNLEX:982"} xref: Wikipedia:Dorsal_raphe_nucleus -xref: ZFA:0000366 is_a: UBERON:0007415 ! nucleus of midbrain reticular formation relationship: mutually_spatially_disjoint_with UBERON:0002145 {source="ABA"} ! interpeduncular nucleus relationship: part_of UBERON:0002639 {source="Wikipedia"} ! midbrain reticular formation @@ -198166,6 +200264,8 @@ property_value: editor_note "TODO check dorsal vs inferior. ZF has no pons." xsd [Term] id: UBERON:0002044 name: ventral nucleus of posterior commissure +subset: human_subset +subset: mouse_subset synonym: "Darkshevich nucleus" EXACT [] synonym: "Darkshevich's nucleus" EXACT [FMA:68464] synonym: "Dk" BROAD OMO:0003000 [BIRNLEX:896, NIFSTD:NeuroNames_abbrevSource] @@ -198202,6 +200302,8 @@ relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum id: UBERON:0002045 name: cuneate nucleus def: "One of the dorsal column nuclei, the cuneate nucleus is a wedge-shaped nucleus in the closed part of the medulla oblongata. It contains cells that give rise to the cuneate tubercle, visible on the posterior aspect of the medulla. It lies laterally to the gracile nucleus and medial to the spinal trigeminal nucleus in the medulla. [WP,unvetted]." [Wikipedia:Cuneate_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "Burdach's nucleus" EXACT [] synonym: "burdachs nucleus" EXACT [BIRNLEX:2640] @@ -198238,6 +200340,8 @@ id: UBERON:0002046 name: thyroid gland def: "A two-lobed endocrine gland found in all vertebrates, located in front of and on either side of the trachea in humans, and producing various hormones, such as triiodothyronine and calcitonin[BTO]." [BTO:0001379, Wikipedia:Thyroid] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -198288,6 +200392,8 @@ property_value: taxon_notes "In tetrapods, the thyroid is always found somewhere id: UBERON:0002047 name: pontine raphe nucleus def: "The pontine raphe nucleus is one of the raphe nuclei. It is located in the pontine tegmentum. [WP,unvetted]." [Wikipedia:Pontine_raphe_nucleus] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "nucleus raphe pontis" RELATED OMO:0003011 [NeuroNames:589] @@ -198325,7 +200431,9 @@ def: "Respiration organ that develops as an outpocketing of the esophagus." [htt comment: Snakes and limbless lizards typically possess only the right lung as a major respiratory organ; the left lung is greatly reduced, or even absent. Amphisbaenians, however, have the opposite arrangement, with a major left lung, and a reduced or absent right lung [WP] subset: efo_slim subset: human_reference_atlas +subset: human_subset subset: major_organ +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -198358,6 +200466,7 @@ is_a: UBERON:0005178 ! thoracic cavity element is_a: UBERON:0015212 ! lateral structure relationship: contributes_to_morphology_of UBERON:0001004 ! respiratory system relationship: develops_from UBERON:0000118 ! lung bud +relationship: has_part UBERON:0002185 ! bronchus relationship: in_lateral_side_of UBERON:0000170 ! pair of lungs relationship: in_taxon NCBITaxon:7776 ! Gnathostomata relationship: located_in UBERON:0002224 ! thoracic cavity @@ -198379,6 +200488,8 @@ id: UBERON:0002049 name: vasculature def: "An interconnected tubular multi-tissue structure contains fluid that is actively transported around the organism[ZFA]. Examples: vasculature of lung, vasculature of face." [ZFA:0005249] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -198401,7 +200512,9 @@ id: UBERON:0002050 name: embryonic structure def: "Anatomical structure that is part of an embryo." [BTO:0000174, ZFIN:curator] subset: efo_slim +subset: human_subset subset: inconsistent_with_fma +subset: mouse_subset subset: vertebrate_core synonym: "developing embryonic structure" EXACT [FBbt:00004208] synonym: "developing structure" RELATED [] @@ -198439,6 +200552,8 @@ id: UBERON:0002051 name: epithelium of bronchiole def: "An epithelium that is part of a bronchiole [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bronchiolar epithelium" EXACT [BTO:0001866] synonym: "bronchiole epithelial tissue" EXACT [OBOL:automatic] @@ -198470,6 +200585,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002052 name: adrenal gland capsule def: "The thick capsule of dense irregular connective tissue that surrounds each adrenal gland and contains scattered elastic fibers; the capsule contains a rich plexus of blood vessels (mainly small arteries) and numerous nerve fibers; some blood vessels and nerves enter the substance of the gland in the trabeculae that extend inward from the capsule and then leave the trabeculae to enter the cortex." [MP:0013565] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "adrenal capsule" RELATED [] synonym: "capsule of adrenal gland" EXACT [FMA:69087] @@ -198491,6 +200608,8 @@ relationship: part_of UBERON:0002369 ! adrenal gland id: UBERON:0002053 name: zona glomerulosa of adrenal gland def: "The narrow subcapsular outer zone of the adrenal cortex where aldosterone is produced." [MESH:A06.407.071.140.960, MGI:llw2, MP:0008293] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "adrenal gland zona glomerulosa" EXACT [MA:0001891] @@ -198517,6 +200636,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gr id: UBERON:0002054 name: zona fasciculata of adrenal gland def: "The wide middle zone of the adrenal cortex that produces cortisol (hydrocortisone)." [MESH:A06.407.071.140.950, MP:0008294] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "adrenal gland zona fasciculata" EXACT [MA:0001890] @@ -198541,6 +200662,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gr id: UBERON:0002055 name: zona reticularis of adrenal gland def: "The inner zone of the adrenal cortex that produces the enzymes that convert pregnenolone, a 21-carbon steroid, to 19-carbon steroids." [MESH:A06.407.071.140.970, MP:0008295] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "adrenal gland zona reticularis" EXACT [MA:0001892] @@ -198566,6 +200689,8 @@ id: UBERON:0002056 name: inferior suprarenal artery def: "Each renal artery gives off some small inferior suprarenal branches to the suprarenal gland, the ureter, and the surrounding cellular tissue and muscles. [WP,unvetted]." [Wikipedia:Inferior_suprarenal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria suprarenalis inferior" RELATED OMO:0003011 [Wikipedia:Inferior_suprarenal_artery] xref: EMAPA:37088 {source="MA:th"} @@ -198586,6 +200711,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/61/Gr id: UBERON:0002057 name: phrenic artery def: "An artery that supplies the diaphragm." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: EMAPA:37108 {source="MA:th"} xref: FMA:69330 @@ -198605,6 +200732,8 @@ name: main ciliary ganglion def: "A parasympathetic ganglion located in the posterior orbit that contains preganglionic nerves and postganglionic neurons of the oculomotor nerve, connects to the Edinger-Westphal nucleus via the oculomotor nerve and the eye muscles via the short ciliary nerve." [UBERON:cjm, Wikipedia:Ciliary_ganglion] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ciliary ganglion" EXACT [MA:0001136] @@ -198640,6 +200769,8 @@ id: UBERON:0002059 name: submandibular ganglion def: "The ganglion associated with the lingual nerve that provides postsynaptic fibers to the submandibular and sublingual glands." [ISBN:0-683-40008-8, MP:0001035] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "Blandin`s ganglion" RELATED [BTO:0001318] @@ -198672,6 +200803,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/en/thumb/8/83/G id: UBERON:0002060 name: femoral artery def: "The femoral artery is a large artery in the muscles of the thigh. It is a continuation of external iliac artery where it enters the femoral triangle at the mid inguinal point behind the inguinal ligament. It leaves femoral triangle through apex beneath the sartorius muscle. It enters the popliteal fossa by passing through the 5th osseo-aponeurotic(adductor hiatus) opening of adductor magnus where it becomes the Popliteal Artery. [WP,unvetted]." [Wikipedia:Femoral_artery] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria femoralis" RELATED OMO:0003011 [Wikipedia:Femoral_artery] xref: AAO:0010222 @@ -198697,6 +200830,8 @@ property_value: external_definition "Artery which supplies blood via branches to id: UBERON:0002061 name: truncus arteriosus def: "The truncus arteriosus and bulbus cordis are divided by the aorticopulmonary septum. The truncus arteriosus gives rise to the ascending aorta and the pulmonary trunk. The bulbus cordis gives rise to the smooth parts (outflow tract) of the left and right ventricles." [Wikipedia:Truncus_arteriosus_(embryology)] +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: EHDAA2:0004143 xref: EMAPA:35887 @@ -198721,6 +200856,8 @@ id: UBERON:0002062 name: endocardial cushion def: "The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves[GO]. Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves[ZFA]." [GO:0003197, Wikipedia:Atrioventricular_cushions, ZFIN:curator] comment: GO graph seems to suggest this is an endothelium. WP: The endocardial cushions are thought to arise from a subset of endothelial cells that undergo epithelial to mesenchymal transformation, a process whereby these cells break cell-to-cell contacts and migrate into the cardiac jelly (towards to interior of the heart tube). Latest (2010-06-01) new def suggested for GO, added above. Note that EHDAA2 has a more detailed model which we may later adopt. JB: Patterning makes the cushions lay down connective tissue in three domains that force out the local endothelial lining and so the leaflets form +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -198760,6 +200897,8 @@ property_value: homology_notes "(Cardiac valve formation in vertebrates) In resp id: UBERON:0002063 name: sinus venosus def: "The sinus venosus is a large cardiac chamber at the inflow tract that receives venous blood from systemic circulation. precedes the atrium on the venous side of the chordate heart." [PMID:20735616, Wikipedia:Sinus_venosus] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -198799,6 +200938,8 @@ property_value: taxon_notes "In zebrafish, the sinus venosus also acts as a pace id: UBERON:0002064 name: common cardinal vein def: "Either of a pair of large transverse venous sinuses that conduct blood from the cardinal veins to the sinus venosus of the vertebrate embryo[BTO]." [BTO:0004388, Wikipedia:Common_cardinal_veins] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -198833,6 +200974,8 @@ property_value: taxon_notes "Paired in gnathostomes; with only a vestige of the id: UBERON:0002065 name: posterior cardinal vein def: "One of two paired cardinal veins that return blood from the body of the embryo[Kardong]." [ISBN:0073040584, Wikipedia:Posterior_cardinal_vein] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -198872,6 +201015,8 @@ name: umbilical vein def: "The umbilical vein is a blood vessel present during fetal development that carries oxygenated blood from the placenta to the growing fetus. [WP,unvetted]." [https://github.com/obophenotype/uberon/issues/328, Wikipedia:Umbilical_vein] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "vena umbilicalis" RELATED OMO:0003011 [Wikipedia:Umbilical_vein] @@ -198906,6 +201051,8 @@ name: dermis def: "The dermis is a layer of skin between the epidermis (with which it makes up the skin) and subcutaneous tissues, and is composed of two layers, the papillary and reticular dermis[WP]." [Wikipedia:Dermis, ZFIN:curator] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -198956,6 +201103,8 @@ property_value: homology_notes "When approaching controversies surrounding skin id: UBERON:0002068 name: urachus def: "A fibrous remnant of the allantoic stalk, a narrow fetal canal connecting the apex of the urinary bladder with the umbilicus located in the space of Retzius, between the transversalis fascia anteriorly and the peritoneum posteriorly. its lumen is normally obliterated during development, transforming the urachus into a solid cord, a functionless remnant that persists throughout life as the median umbilical ligament; failure of complete lumen obliteration may result in distinct congenital urachal remnant anomalies[MP]." [MP:0011852, MP:anna] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: EHDAA2:0002137 @@ -198987,6 +201136,8 @@ id: UBERON:0002069 name: stratum granulosum of epidermis def: "The layer of flattened cells containing basophilic granules of keratohyalin and lying just above the stratum spinosum (spiny layer) of the epidermis." [ISBN:0-683-40008-8, MP:0001239] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epidermis granular layer" RELATED [] synonym: "epidermis stratum granulosum" EXACT [] @@ -199014,6 +201165,8 @@ id: UBERON:0002070 name: superior pancreaticoduodenal artery def: "The superior pancreaticoduodenal artery is an artery that supplies blood to the duodenum and pancreas. It is a branch of the gastroduodenal artery, which comes from the common hepatic artery of the celiac trunk. The common hepatic itself becomes the proper hepatic after giving off the gastroduodenal artery and goes on to supply the right and left lobes of the liver. The term superior distinguishes the superior pancreaticoduodenal artery from the inferior pancreaticoduodenal artery, which a branch of the superior mesenteric artery. These arteries, together with the pancreatic branches of the splenic artery, form connections or anastomoses with one another, allowing blood to perfuse the pancreas and duodenum through multiple channels. The artery splits into two branches: the anterior superior pancreaticoduodenal artery supplies the anterior margins of the duodenum and pancreas the posterior superior pancreaticoduodenal artery supplies the posterior margins of these organs [WP,unvetted]." [Wikipedia:Superior_pancreaticoduodenal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria pancreaticoduodenalis superior" RELATED OMO:0003011 [Wikipedia:Superior_pancreaticoduodenal_artery] synonym: "superior pancreatico-duodenal artery" EXACT [] @@ -199036,6 +201189,8 @@ id: UBERON:0002071 name: stratum lucidum of epidermis def: "The layer of lightly staining corneocytes found between the stratum granulosum and stratum corneum layers; found primarily in the thick epidermis of the palmar and plantar skin and is composed of three to five layers of dead, flattened keratinocytes." [MP:0009610, Wikipedia:Stratum_lucidum] comment: Located between the stratum granulosum and stratum corneum layers, it is composed of three to five layers of dead, flattened keratinocytes. The keratinocytes of the stratum lucidum do not feature distinct boundaries and are filled with eleidin, an intermediate form of keratin. +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epidermis stratum lucidum" EXACT [] synonym: "stratum conjunctum of epidermis" EXACT [] @@ -199063,6 +201218,8 @@ id: UBERON:0002072 name: hypodermis def: "Lowermost layer of the integumentary system in vertebrates. Types of cells that are found in the hypodermis are fibroblasts, adipose cells, and macrophages. It is derived from the mesoderm, but unlike the dermis, it is not derived from the dermatome region of the mesoderm. The hypodermis is used mainly for fat storage[WP]." [Wikipedia:Hypodermis] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -199109,6 +201266,8 @@ def: "A tube-like opening in the epidermis where the hair shaft develops and int comment: Development notes:Formation largely takes place during fetal and perinatal skin development. However, after skin wounding de novo hair follicle formation may also occur in adult mouse and rabbit skin[DOI:10.1016/j.cub.2008.12.005]. subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -199142,6 +201301,8 @@ id: UBERON:0002074 name: hair shaft def: "The main part of the hair which is composed of trichocytes and is divided into the cortex and medulla." [DOI:10.1016/j.cub.2008.12.005] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "scapus pili" RELATED [BTO:0004672] synonym: "shaft of hair" EXACT [] @@ -199163,6 +201324,8 @@ property_value: editor_note "TODO - check definition of trichocyte in CL" xsd:st id: UBERON:0002075 name: viscus def: "An organ that is located within the body cavity (or in its extension, in the scrotum); it consists of organ parts that are embryologically derived from endoderm, splanchnic mesoderm or intermediate mesoderm; together with other organs, the viscus constitutes the respiratory, gastrointestinal, urinary, reproductive and immune systems, or is the central organ of the cardiovascular system. Examples: heart, lung, esophagus, kidney, ovary, spleen." [BTO:0001491, https://github.com/obophenotype/mouse-anatomy-ontology/issues/14, Wikipedia:Viscus] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -199198,6 +201361,8 @@ id: UBERON:0002076 name: cuticle of hair def: "Smooth and glossy outer protective cell layer of hair shaft." [MGI:llw2, MP:0003810] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hair cuticle" EXACT [] xref: EMAPA:35388 @@ -199216,6 +201381,8 @@ id: UBERON:0002077 name: cortex of hair def: "A cortex that is part of a hair [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "coat hair cortex" EXACT [OBOL:automatic] synonym: "coat/hair cortex" EXACT [OBOL:automatic] @@ -199239,6 +201406,8 @@ id: UBERON:0002078 name: right cardiac atrium def: "A cardiac atrium that is in the right side of the heart. It receives deoxygenated blood. In mammals, this comes from the superior and inferior vena cava and the coronary sinus, and pumps it into the right ventricle through the tricuspid valve." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Right_atrium] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "atrium dextrum" RELATED OMO:0003011 [Wikipedia:Right_atrium] @@ -199280,6 +201449,8 @@ id: UBERON:0002079 name: left cardiac atrium def: "A cardiac atrium that is in the left side of the heart. It receives oxygenated blood from the pulmonary veins, In mammals this is pumped into the left ventricle, via the Mitral valve." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Left_atrium] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "atrium sinistrum" EXACT OMO:0003011 [Wikipedia:Left_atrium] @@ -199322,6 +201493,8 @@ id: UBERON:0002080 name: heart right ventricle def: "A cardiac ventricle that is in the right side of the heart." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cardiac right ventricle" EXACT [] @@ -199363,6 +201536,8 @@ id: UBERON:0002081 name: cardiac atrium def: "Cardiac chamber in which blood enters the heart." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Heart_atrium] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -199406,6 +201581,8 @@ id: UBERON:0002082 name: cardiac ventricle def: "Cardiac chamber through which blood leaves the heart." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Ventricle_(heart)] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -199447,6 +201624,8 @@ property_value: homology_notes "In the primitive vertebrate heart the four chamb id: UBERON:0002083 name: ductus venosus def: "The vascular channel in the fetus passing through the liver and joining the umbilical vein with the inferior vena cava." [VHOG:0000924] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: EHDAA2:0000422 @@ -199474,6 +201653,8 @@ id: UBERON:0002084 name: heart left ventricle def: "A cardiac ventricle that is in the left side of the heart." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cardiac left ventricle" EXACT [] @@ -199515,6 +201696,8 @@ property_value: taxon_notes "In mammals continuous with aorta" xsd:string id: UBERON:0002085 name: interatrial septum def: "A cardiac septum that divides the left and right atria of the heart." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "atrial septum" EXACT [] @@ -199545,6 +201728,8 @@ property_value: homology_notes "The tetrapod clade develops a complete atrial se id: UBERON:0002086 name: sinoatrial valve def: "A valve at the opening of the sinus venosus into the primordial atrium[TFD,modified]." [http://medical-dictionary.thefreedictionary.com/sinoatrial+valve] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "sinoatrial valves" RELATED OMO:0003004 [ZFA:0000680] @@ -199563,6 +201748,8 @@ property_value: curator_notes "in humans and mouse this is the opening from SV i id: UBERON:0002087 name: atrioventricular canal def: "The part of the heart connecting the atrium to the cardiac ventricle[ZFA]. In the developing heart, the constriction between the atrium and ventricle constitutes the atrial canal, and indicates the site of the future atrioventricular valves[WP]." [https://github.com/obophenotype/uberon/issues/38, Wikipedia:Atrioventricular_canal, ZFA:0001315] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -199602,6 +201789,8 @@ id: UBERON:0002088 name: lateral thoracic vein def: "The lateral thoracic vein is a tributary of the axillary vein. It runs with the lateral thoracic artery and drains the serratus ventralis muscle and the Pectoralis major muscle. Normally, the thoracoepigastric vein exists between this vein and superficial epigastric vein (a tributary of femoral vein), to act as a shunt for blood if the portal system (through the liver) develops hypertension or a blockage. [WP,unvetted]." [Wikipedia:Lateral_thoracic_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "vena thoracica lateralis" RELATED OMO:0003011 [Wikipedia:Lateral_thoracic_vein] xref: EMAPA:37163 {source="MA:th"} @@ -199621,6 +201810,8 @@ id: UBERON:0002089 name: thoracodorsal vein def: "Companion vein of the thoracodorsal artery, draining the apical part of the latissimus dorsi and merging with the circumflex scapular vein to form a subscapular vein." [http://www.medilexicon.com/medicaldictionary.php?t=97559] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:37198 {source="MA:th"} xref: FMA:71213 xref: MA:0002238 @@ -199638,6 +201829,8 @@ name: postcranial axial skeleton def: "The postcranial subdivision of skeleton structural components forming the long axis of the vertebrate body; in Danio, consisting of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins; in human consists of the bones of the vertebral column, the thoracic cage and the pelvis[ZFA+FMA]." [https://sourceforge.net/tracker/?func=detail&aid=2983975&group_id=76834&atid=974957, https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=2983977&group_id=76834, ZFA:0000317] comment: previous some AOs had used the term 'axial skeleton' to include the skull. This is being resolved (see tracker items above). Status: MA - fixed. subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -199674,6 +201867,8 @@ name: appendicular skeleton def: "Subdivision of skeleton which which consists of all the skeletal elements in in the pectoral and pelvic appendage complexes[cjm]." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003, Wikipedia:Appendicular_skeleton] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -199711,6 +201906,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Appendages- id: UBERON:0002092 name: brain dura mater def: "The fibrous membrane forming the outer of the three coverings that surrounds the brain within the cranial cavity; consists of two layers including the periosteal layer and the meningeal layer." [MP:0009025] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cranial dura mater" EXACT [FMA:71236] synonym: "dura mater cranialis" EXACT OMO:0003011 [FMA:71236, FMA:TA] @@ -199735,6 +201932,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0002093 name: spinal dura mater def: "A dura mater that is part of a spinal cord [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "dura mater of neuraxis of spinal cord" EXACT [OBOL:automatic] @@ -199762,6 +201961,8 @@ name: interventricular septum def: "Cardiac septum which separates the right ventricle from the left ventricle.[FMA]." [FMA:7133] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "heart interventricular septum" EXACT [MA:0000085] @@ -199804,6 +202005,8 @@ property_value: homology_notes "The two most progressive vertebrate classes, the id: UBERON:0002095 name: mesentery def: "Anatomical organ component composed of a double layer of serous membrane that suspends a viscus from the body wall or connects adjacent viscera and in doing so conveys blood vessels, lymphatics and nerves to and from the viscera. Examples: greater omentum, broad ligament of uterus, sigmoid mesocolon." [FMA:7144, https://github.com/obophenotype/uberon/issues/85, Wikipedia:Mesentery, Wikipedia:Mesentery#Mesentery_.28general.29] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -199833,7 +202036,9 @@ name: skin of body def: "The organ covering the body that consists of the dermis and epidermis." [UBERON:cjm] subset: efo_slim subset: human_reference_atlas +subset: human_subset subset: major_organ +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "entire integument" RELATED [] @@ -199873,6 +202078,8 @@ property_value: external_ontology_notes "MA uses the term skin to refer to what id: UBERON:0002098 name: apex of heart def: "The apex of the heart is the lowest superficial part of the heart. It is directed downward, forward, and to the left, and is overlapped by the left lung and pleura. [WP,unvetted]." [Wikipedia:Apex_of_the_heart] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "apex cordis" EXACT OMO:0003011 [] @@ -199893,6 +202100,8 @@ property_value: external_ontology_notes "FMA also has terms for the apical zone" id: UBERON:0002099 name: cardiac septum def: "The thin membranous structure between the two heart atria or the thick muscular structure between the two heart ventricles." [MESH:A07.541.459] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cardiac septa" EXACT OMO:0003004 [] @@ -199923,6 +202132,8 @@ id: UBERON:0002100 name: trunk def: "Organism subdivision which is the part of the body posterior to the cervical region (or head, when cervical region not present) and anterior to the caudal region. Includes the sacrum when present." [TAO:0001115, UBERONREF:0000006, Wikipedia:Torso] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -199965,6 +202176,8 @@ id: UBERON:0002101 name: limb def: "A paired appendage that is evolved from a paired fin. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the girdle and its parts." [UBERONREF:0000003] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "extremities" RELATED OMO:0003004 [] @@ -200012,6 +202225,8 @@ id: UBERON:0002102 name: forelimb def: "A (free) limb that is connected to a pectoral girdle. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the pectoral girdle and its parts." [UBERONREF:0000003] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "anteriormost limb" EXACT [] @@ -200069,6 +202284,8 @@ id: UBERON:0002103 name: hindlimb def: "A (free) limb that is connected to a pelvic girdle region. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the pelvic girdle and its parts." [UBERONREF:0000003, Wikipedia:Hindlimb, Wikipedia:Lower_limb] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "free lower limb" EXACT [FMA:24879, UBERONREF:0000003] @@ -200127,6 +202344,8 @@ id: UBERON:0002104 name: visual system alt_id: UBERON:0007036 def: "The sensory system subserving the sense of vision." [NIFSTD:FMAID_7191] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -200154,6 +202373,8 @@ id: UBERON:0002105 name: vestibulo-auditory system def: "Sensory system responsible for the perception of spatial orientation and auditory stimuli." [ZFA:0001138] subset: functional_classification +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -200179,6 +202400,8 @@ name: spleen def: "The organ that functions to filter blood and to store red corpuscles and platelets." [ISBN:0-683-40008-8, MP:0000689] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -200233,7 +202456,9 @@ name: liver def: "An exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO]." [BTO:0000759, Wikipedia:Liver] subset: efo_slim subset: human_reference_atlas +subset: human_subset subset: major_organ +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -200303,7 +202528,9 @@ name: small intestine def: "Subdivision of digestive tract that connects the stomach to the large intestine and is where much of the digestion and absorption of food takes place (with the exception of ruminants). The mammalian small intestine is long and coiled and can be differentiated histologically into: duodenum, jejunem, ileum[WP,cjm,Kardong]." [ISBN:0073040584, Wikipedia:Small_intestine] subset: efo_slim subset: human_reference_atlas +subset: human_subset subset: major_organ +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -200350,6 +202577,8 @@ property_value: homology_notes "Intestinal surface area also is increased in amp id: UBERON:0002109 name: pair of nares def: "Pair of nostrils." [Wikipedia:Nares] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nares" RELATED [] synonym: "nares set" EXACT [] @@ -200373,6 +202602,8 @@ name: gallbladder def: "An organ that aids digestion and stores bile produced by the liver[WP]." [Wikipedia:Gallbladder] comment: Rats do not have a gallbladder, but produce bile. The bile flows directly from the liver through the (hepatic) bile duct into the small intestine (Hebel and Stromberg, 1988) subset: efo_slim +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -200428,6 +202659,8 @@ property_value: homology_notes "The presence of a gallbladder appears to be a pr id: UBERON:0002111 name: artery smooth muscle tissue def: "A portion of smooth muscle tissue that is part of an artery [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arterial smooth muscle" EXACT [BTO:0000087] synonym: "arterial smooth muscle cell" RELATED [BTO:0000087] synonym: "artery smooth muscle" EXACT [] @@ -200451,6 +202684,8 @@ relationship: part_of UBERON:0001637 ! artery id: UBERON:0002112 name: smooth muscle of esophagus def: "A portion of smooth muscle tissue that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "esophageal smooth muscle" EXACT [] synonym: "esophagus involuntary muscle" EXACT [OBOL:automatic] @@ -200492,7 +202727,9 @@ name: kidney def: "A paired organ of the urinary tract that produces urine and maintains bodily fluid homeostasis, blood pressure, pH levels, red blood cell production and skeleton mineralization." [http://anatomy.uams.edu/anatomyhtml/kidney.html, https://www.kidney.org/kidneydisease/top-5-jobs-kidneys-do, PMID:25140012, PMID:35003210, Wikipedia:Kidney] subset: efo_slim subset: human_reference_atlas +subset: human_subset subset: major_organ +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -200533,6 +202770,8 @@ name: duodenum def: "The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." [ISBN:0815318960, Wikipedia:Duodenum] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -200578,6 +202817,8 @@ name: jejunum def: "The portion of the small intestine that extends from the duodenum to the ileum." [MGI:monikat, MP:0004002] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "intestinum jejunum" RELATED [BTO:0000657] @@ -200619,6 +202860,8 @@ name: ileum def: "The portion of the small intestine that extends from the jejunum to the colon." [ISBN:0-683-40008-8, MGI:csmith, MP:0002581] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "distal intestine" RELATED [BTO:0000620] @@ -200660,6 +202903,8 @@ property_value: taxon_notes "The ileum is the final section of the small intesti id: UBERON:0002118 name: right ovary def: "An ovary that is part of a right side of organism [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37367 {source="MA:th"} xref: FMA:7213 xref: MA:0001705 @@ -200677,6 +202922,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0002119 name: left ovary def: "An ovary that is part of a left side of organism [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37366 {source="MA:th"} xref: FMA:7214 xref: MA:0001704 @@ -200698,6 +202945,8 @@ alt_id: UBERON:0005794 def: "In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensible for larval life[GO]." [GO:0048793, Wikipedia:Pronephros] comment: Once the more complex mesonephros forms the pronephros undergoes apoptosis in amphibians. In fishes the nephron degenerates but the organ remains and becomes a component of the immune system[Wikipedia:Pronephros]. // TODO - check developmental relationships. Note that we previously include the ZFA/XAO terms under the more specific 'pronephric kidney', but these are now merged. TODO GCI: relationship: capable_of GO:0030104 subset: efo_slim +subset: human_subset +subset: mouse_subset subset: organ_slim subset: uberon_slim synonym: "archinephron" RELATED [BTO:0001541] @@ -200740,6 +202989,8 @@ id: UBERON:0002122 name: capsule of thymus def: "The fibrous connective tissue surrounding the thymus." [MP:0002368] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "thymic capsule" EXACT [] synonym: "thymus capsule" EXACT [] @@ -200762,6 +203013,8 @@ id: UBERON:0002123 name: cortex of thymus def: "The outer part of a thymus lobule that surrounds the medulla and is composed of closely packed lymphocytes." [ISBN:0-683-40008-8, MP:0002371] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "thymic cortex" EXACT [BTO:0002934] synonym: "thymus cortex" EXACT [MA:0000767] @@ -200791,6 +203044,8 @@ name: medulla of thymus def: "Medullary portion of thymus. The reticulum is coarser than in the cortex, the lymphoid cells are relatively fewer in number, and there are found peculiar nest-like bodies, the concentric corpuscles of Hassall. These concentric corpuscles are composed of a central mass, consisting of one or more granular cells, and of a capsule formed of epithelioid cells. They are the remains of the epithelial tubes, which grow out from the third branchial pouches of the embryo to form the thymus. Each follicle is surrounded by a vascular plexus, from which vessels pass into the interior, and radiate from the periphery toward the center, forming a second zone just within the margin of the medullary portion. In the center of the medullary portion there are very few vessels, and they are of minute size." [Wikipedia:Thymus#Medulla] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "medulla of thymus gland" EXACT [OBOL:automatic] synonym: "thymus gland medulla" EXACT [OBOL:automatic] @@ -200817,6 +203072,8 @@ id: UBERON:0002125 name: thymus lobule def: "A lobule that is part of a thymus. Divided into an outer cortex and inner medulla and separated from each other by connective tissue septa, but with the medullary tissue continuous from lobule to lobule.[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Thymic_Lobule] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lobule of thymus" EXACT [FMA:72215] synonym: "thymic lobule" EXACT [] @@ -200844,6 +203101,8 @@ property_value: taxon_notes "in the mouse, the lobes of the thymus are not subdi id: UBERON:0002126 name: solitary tract nuclear complex def: "The solitary tract and nucleus are structures in the brainstem that carry and receive visceral sensation and taste from the facial (VII), glossopharyngeal (IX) and vagus (X) cranial nerves. [WP,unvetted]." [Wikipedia:Nucleus_of_tractus_solitarius] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nuclei of solitary tract" EXACT [] synonym: "nucleus tractus solitarii" EXACT OMO:0003011 [FMA:72242, FMA:TA] @@ -200868,6 +203127,8 @@ id: UBERON:0002127 name: inferior olivary complex def: "Largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements." [Wikipedia:Inferior_olivary_nucleus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -200922,6 +203183,8 @@ property_value: homology_notes "The inferior olive appears to be present in all id: UBERON:0002128 name: superior olivary complex def: "A collection of brainstem nuclei that functions in multiple aspects of hearing and is an important component of the ascending and descending auditory pathways of the auditory system." [ISBN:0-19-502694-2, Wikipedia:Superior_olivary_complex] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nucleus olivaris superior" EXACT OMO:0003011 [FMA:72247, FMA:TA] synonym: "regio olivaris superioris" RELATED OMO:0003011 [NeuroNames:569] @@ -200960,6 +203223,8 @@ name: cerebellar cortex def: "The superficial gray matter of the cerebellum. It consists of three main layers, the molecular layer, the Purkinje cell layer and the granule cell layer." [BIRNLEX:1566] comment: The circuits in the cerebellar cortex look similar across all classes of vertebrates, including fish, reptiles, birds, and mammals (e.g., Fig. 2). This has been taken as evidence that the cerebellum performs functions important to all vertebrate species. (Wikipedia) subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cortex cerebellaris" RELATED [BTO:0000043] @@ -201004,6 +203269,8 @@ name: cerebellar nuclear complex alt_id: UBERON:0004007 def: "The gray matter nuclei located in the center of the cerebellum, embedded in the white matter, which receive inhibitory (GABAergic) inputs from Purkinje cells in the cerebellar cortex and excitatory (glutamatergic) inputs from mossy fiber pathways; all output fibers of the cerebellum originate from the these nuclei[MP]." [MP:0009979, Wikipedia:Deep_cerebellar_nuclei] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "central nuclei" EXACT [] synonym: "cerebellar nuclei" EXACT [] @@ -201043,6 +203310,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/23/Gr id: UBERON:0002131 name: anterior lobe of cerebellum def: "The region of the cerebellum that is anterior to the primary fissure." [ISBN:0838580343, MP:0009960] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "anterior cerebellar lobe" EXACT [] @@ -201078,6 +203347,8 @@ id: UBERON:0002132 name: dentate nucleus alt_id: UBERON:0008996 def: "The largest and most lateral of the deep cerebellum nuclei; it receives axons of Purkinje cells in the lateral cerebellar hemisphere (neocerebellum) and receives its afferents from the premotor cortex and the supplementary motor cortex through the pontocerebellar system, and its efferents project through the superior cerebellar peduncle and is a major source of its fibers." [ISBN:0-683-40008-8, MP:0009980] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "dentate cerebellar nucleus" EXACT [BIRNLEX:1171] @@ -201115,6 +203386,8 @@ property_value: homology_notes "One or more deep cerebellar nuclei appear in agn id: UBERON:0002133 name: atrioventricular valve def: "A cardial valve in the atrioventricular region that separates the atrium from the ventricle and prevent backflow from the ventricles into the atria during systole." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Heart_valve#Atrioventricular_valves] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "atrio-ventricular valve" RELATED [EMAPA:35154] @@ -201148,6 +203421,8 @@ id: UBERON:0002134 name: tricuspid valve def: "An atrioventricular valve that is part of the outflow part of the right atrium." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "right atrioventricular valve" EXACT [FMA:7234] @@ -201188,6 +203463,8 @@ name: mitral valve def: "An atrioventricular valve that is part of the outflow part of the left atrium." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "bicuspid valve" RELATED [] @@ -201228,6 +203505,8 @@ id: UBERON:0002136 name: hilus of dentate gyrus def: "Layer of the dentate gyrus lying deep to the granule cell layer, within the opening of the C or V formed by the granule cell layer characterized by loosely packed polymorphic cells." [BIRNLEX:1482] comment: Merge with CA4? +subset: human_subset +subset: mouse_subset synonym: "CA4" RELATED [] synonym: "dentate gyrus hilus" EXACT [] synonym: "field CA4 of hippocampal formation" EXACT [] @@ -201254,6 +203533,8 @@ def: "Cardiac valve which has as its parts the anterior, right posterior and lef comment: Human variation: It is normally tricuspid (with three leaflets), although in 1% of the population it is found to be congenitally bicuspid (two leaflets) subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "valva aortae" RELATED OMO:0003011 [Wikipedia:Aortic_valve] @@ -201284,6 +203565,8 @@ property_value: external_definition "The valve between the left ventricle of the id: UBERON:0002138 name: habenulo-interpeduncular tract def: "White matter tract containing fibers projecting from the habenular nuclei to the interpeduncular nucleus (Maryann Martone)." [BIRNLEX:1504] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "fasciculus habenulo-interpeduncularis" RELATED OMO:0003011 [NeuroNames:2318] synonym: "fasciculus retroflexi" RELATED OMO:0003004 [ZFA:0000353] @@ -201325,6 +203608,8 @@ id: UBERON:0002139 name: subcommissural organ def: "The subcommissural organ is a circumventricular organ consisting of ependymal and hypendymal cells which secrete SCO-spondin[WP,partially vetted]." [PMID:9579598, Wikipedia:Subcommissural_organ] comment: Occurs throughout the vertebartes [PMID:9579598, DOI:10.1002/ar.1091260210]. First appears in hagfish(Olsson). In many species, including the human, it reaches its full development during embryonic life[PMID:9579598]. During the course of phyletic evolution, one notes various changes. Indeed, in lower vertebrates, the SCO presents a greater degree of enzyme activity than the ependyma while in birds the ependyma demonstrates a more intense activity than the SCO[PMID:479574] Sometimes preceded by flexural organ[DOI:10.1007/BF00303086]. Hypendymal cells are rare in non-mammals [PMID:9579598]. {xref="DOI:10.1002/ar.1091260210", xref="PMID:479574", xref="DOI:10.1007/BF00303086", xref="PMID:9579598"} +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -201364,6 +203649,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gr id: UBERON:0002140 name: parabigeminal nucleus def: "Cholinergic cell group that is located ventral to the brachium of the inferior colliculus (in rat) and has reciprocal connectivity with the superior colliculus (Adapted from Paxinos, The rat central nervous system, 2nd ed, 1995, pg 865." [BIRNLEX:1007] +subset: human_subset +subset: mouse_subset synonym: "corpus parabigeminum" RELATED OMO:0003011 [NeuroNames:482] synonym: "nucleus isthmi" RELATED [VHOG:0001701] synonym: "nucleus parabigeminalis" EXACT [NeuroNames:482] @@ -201391,6 +203678,8 @@ property_value: homology_notes "Nucleus isthmi is present in the isthmus in most id: UBERON:0002141 name: parvocellular oculomotor nucleus def: "Nucleus that is part of the oculomotor nerve complex consisting of preganglionic parasympathetic neurons situated close to the midline at the level of the superior colliculus (Heimer, the Human Brain and Spinal Cord, 1994, pg 244)." [BIRNLEX:822] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "accessory oculomotor nucleus" EXACT [Wikipedia:Edinger-westphal_nucleus] @@ -201446,6 +203735,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2658" xsd id: UBERON:0002142 name: pedunculopontine tegmental nucleus def: "The pedunculopontine nucleus (PPN) (or pedunculopontine tegmental nucleus, PPTN) is located in the brainstem, caudal to the substantia nigra and adjacent to the superior cerebellar peduncle. It is composed by a wide variety of neurochemical cell types, including cholinergic, glutamatergic and GABAergic cells. In the classical sense, the PPN is considered to be one of the main components of the reticular activating system. [WP,unvetted]." [https://github.com/obophenotype/mouse-anatomy-ontology/issues/95, Wikipedia:Pedunculopontine_tegmental_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nucleus pedunculopontinus" RELATED OMO:0003011 [NeuroNames:504] synonym: "nucleus tegmenti pedunculopontinus" RELATED OMO:0003011 [NeuroNames:504] @@ -201475,6 +203766,8 @@ relationship: part_of UBERON:0002639 {inconsistent_with="MA", source="FMA", sour [Term] id: UBERON:0002143 name: dorsal tegmental nucleus +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "dorsal tegmental nucleus (Gudden)" EXACT [] synonym: "dorsal tegmental nucleus of Gudden" EXACT [BIRNLEX:992] @@ -201526,6 +203819,8 @@ relationship: part_of UBERON:0001943 ! midbrain tegmentum id: UBERON:0002144 name: peripeduncular nucleus def: "A group of neuron cell bodies that form a thin, caplike configuration over the dorsolateral aspect of the crus cerebri; many of its cells are acetylcholinesterase positive." [http://www.medilexicon.com/medicaldictionary.php?t=61630] +subset: human_subset +subset: mouse_subset synonym: "nucleus peripeduncularis" RELATED OMO:0003011 [NeuroNames:520] synonym: "nucleus peripeduncularis thalami" RELATED OMO:0003011 [NeuroNames:520] synonym: "peripeduncular nucleus of pons" EXACT [FMA:72437] @@ -201557,6 +203852,8 @@ property_value: external_ontology_notes "FMA and NIF support this being part of [Term] id: UBERON:0002145 name: interpeduncular nucleus +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "interpedunclear nucleus" RELATED [MTB:379] synonym: "interpeduncular ganglion" EXACT [] @@ -201593,6 +203890,8 @@ id: UBERON:0002146 name: pulmonary valve def: "The semilunar valve of the heart that lies between the right ventricle and the pulmonary artery." [Wikipedia:Pulmonary_valve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "pulmonic valve" EXACT [] @@ -201626,6 +203925,8 @@ property_value: external_definition "The valve with semilunar cusps at the entra id: UBERON:0002147 name: reticulotegmental nucleus def: "The tegmental pontine reticular nucleus (or pontine reticular nucleus of the tegmentum) is an area within the floor of the midbrain. This area is known to affect the cerebellum with its axonal projections. These efferent connections have been proven to project not only ipsilaterally, but also to decussate and project to the contralateral side of the vermis. It has also been shown that the projections from the tegmenti pontis to the cerebellar lobes are only crossed fibers. The n.r. tegmenti pontis also receives afferent axons from the cerebellum. This nucleus is known for its large amount of multipolar cells and its particularly reticular structure. The n.r. tegmenti pontis is topographically related to pontine nuclei (non-reticular), being just dorsal to them. The nucleus reticularis has been known to mediate eye movements, otherwise known as so-called saccadic movement. This makes sense concerning their connections as it would require a nucleus which receives and projects to the cerebellum to mediate that kind of complex circuitry. Also, behaviorally this makes sense as no one thinks about saccadic movements when scanning a room and the saccadic movements are not directly controlled by the cortex. The nuclei of the cerebellum are the most traditionally studied mostly because it is easy to see which nuclei degrade when the cerebellum is amputated. The neurons of the lateral reticular formation are very important for reflexes and the mediation of posture. It has been shown in cats that electrical stimulation of the reticular formation can make a standing cat lie down. Conversely if the cat is stimulated in an alternate spot it can make a lying cat stand." [Wikipedia:Tegmental_pontine_reticular_nucleus] +subset: human_subset +subset: mouse_subset synonym: "nucleus reticularis tegmenti pontis" EXACT OMO:0003011 [FMA:72471, FMA:TA] synonym: "reticular tegmental nucleus" EXACT [] synonym: "reticulotegmental nucleus of pons" EXACT [] @@ -201663,6 +203964,8 @@ id: UBERON:0002148 name: locus ceruleus def: "The locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic[GO]. Bluish region in the superior angle of the fourth ventricle floor, corresponding to melanin-like pigmented nerve cells which lie lateral to the ponto-mesencephalic central gray (griseum centrale). It is also known as nucleus pigmentosus pontis[GAID]." [GAID:577, GO:0021703, Wikipedia:Locus_ceruleus] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -201718,6 +204021,8 @@ property_value: editor_note "TODO - check ZFA/pons. also GO says part of dorsoro id: UBERON:0002149 name: superior salivatory nucleus def: "Nucleus containing parasympathetic neurons giving rise to the parasympathetic division of the facial nerve, innervating the salivary glands (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 703)." [BIRNLEX:1131] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nucleus salivarius superior" RELATED OMO:0003011 [NeuroNames:590] synonym: "nucleus salivatorius cranialis" RELATED OMO:0003011 [NeuroNames:590] @@ -201761,6 +204066,8 @@ id: UBERON:0002150 name: superior cerebellar peduncle def: "A composite structure of the brain stem, which in NeuroNames is subdivided into the superior cerebellar peduncle of pons, the decussation of superior cerebellar peduncle and the superior cerebellar peduncle of midbrain (MM)." [BIRNLEX:1711] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "brachium conjunctivum" EXACT [BIRNLEX:1711] @@ -201800,6 +204107,8 @@ id: UBERON:0002151 name: pontine nuclear group def: "Nuclei in the basal pons, intermingled among the descending axons from the cortex, that receive neocrotcial input and give rise to many axons that cross the midline to enter the contralateral cerebellum (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed., 2005, pg 135)." [BIRNLEX:1516] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nuclei brachii pontis" RELATED OMO:0003011 [NeuroNames:617] synonym: "nuclei pontis" RELATED OMO:0003011 [BTO:0003396, Wikipedia:Pontine_nuclei] @@ -201848,6 +204157,8 @@ id: UBERON:0002152 name: middle cerebellar peduncle def: "Regional part of medullary white matter (according to Neuronames) primarily found at the level of the pons, consisting of a very large bundle of fibers originating in the pontine nuclei projecting to the cerebellum (MM)." [BIRNLEX:1529] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "brachium pontis" EXACT [BIRNLEX:1529] @@ -201886,6 +204197,8 @@ id: UBERON:0002153 name: fastigial nucleus alt_id: UBERON:0008997 def: "The most medial of the cerebellar nuclei; it receives its afferent input from Purkinje cells of the flocculonodular lobe and the vermis, and most of its efferent connections travel via the inferior cerebellar peduncle to the vestibular nuclei and to the medullary reticular formation." [ISBN:0-683-40008-8, MP:0009983] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "fasciculosus thalamic nucleus" RELATED [BAMS:Fas] @@ -201927,6 +204240,8 @@ property_value: homology_notes "One or more deep cerebellar nuclei appear in agn id: UBERON:0002154 name: lateral reticular nucleus def: "A nucleus of the lateral medullary nuclear complex." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "lateral reticular nuclei" RELATED OMO:0003004 [ZFA:0000535] @@ -201963,6 +204278,8 @@ property_value: external_ontology_notes "in ABA this is disjoint from MDR, but w id: UBERON:0002155 name: gigantocellular nucleus def: "Nucleus located in the rostral ventrolateral medulla. The PGL was originally identified by cytoarchitectural criteria in the human medulla (Olszewski and Baxter, 1954). In humans, the PGL is located in the ventrolateral quadrant of the rostral medullary tegmentum between the nucleus subtrigeminalis caudally, trapezoid body and the superior olive rostrally, nucleus gigantocellularis medially, spinothalamic tract fibers laterally, inferior olive ventrally, and the nucleus ambiguous dorsally (Olszewski and Baxter, 1954). In the rat, the PGL has been further subdivided into retrofacial PGL (caudal to the facial nucleus), and more rostrally located juxtafacial PGL (medial to the facial nucleus), based upon different connectivity." [NLXANAT:1005001] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "gigantocellular group" EXACT [HBA:GiRt] synonym: "gigantocellular reticular nuclei" EXACT [DHBA:GiRt] @@ -201998,6 +204315,8 @@ id: UBERON:0002156 name: nucleus raphe magnus def: "The nucleus raphe magnus, located directly rostral to the raphe obscurus, is afferently stimulated from axons in the spinal cord and cerebellum. This makes the magnus a likely candidate for part of the motor system; however, it seems to participate in the endogenous analgesia system. The magnus receives descending afferents from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, parvocellular reticular nucleus and the prelimbic, infralimbic, medial and lateral precentral cortices . All of these brain areas influence the main function of the raphe magnus. The main function of the magnus is mostly pain mediation; in fact it sends projections to the dorsal horn of the spinal cord to directly inhibit pain. The periaquiductal gray, the epicenter of analgesia, sends efferent connections to the nucleus raphe magnus in when it is stimulated by opiates (endogenous or otherwise). Electrical stimulation of the PAG produces analgesia, as well as administration of morphine to the PAG or n.r. magnus. The antinociceptic effects of electrical stimulation of the PAG can be blocked by administering naloxone, an opiate antagonist, to the n.r. magnus. All of this seems to indicate that the magnus is part of the endogenous opiate system, and acts to inhibit pain in the spinal cord. [WP,unvetted]." [Wikipedia:Nucleus_raphe_magnus] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "magnus raphe nucleus" EXACT [] @@ -202031,6 +204350,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/94/Gr id: UBERON:0002157 name: nucleus raphe pallidus def: "The nucleus raphe pallidus receives afferent connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Also, the pallidus receives afferents from the medial preoptic area, median preoptic nucleus and lateral paragigantocellular reticular nuclei . The pallidus has recently been shown to be involved in the activation of a fever as an immunoreaction. It has been implied that the preoptic area is constantly inhibiting the raphe pallidus, especially the rostral portion, with GABA. When the preoptic area receives immune signals from the body, the inhibition stops and the rostral portion of the raphe pallidus excites the intermediolateral cell column, which induces a fever . The raphe pallidus has also been known to mediate the tachycardia response, an extremely high heart rate known to be incited by emotional or psychological stress. Microinjections of a GABA-a antagonist into the raphe pallidus, induces an increased heart rate. Conversely, microinjections of muscimol, a GABA-a agonist, inhibit tachycardia in rats under air-stress stimuli. In both of these cases, GABA is mediating two different sympathetic responses, so clearly the nucleus raphe pallidus is a far more a complex nucleus than previously thought. [WP,unvetted]." [Wikipedia:Nucleus_raphe_pallidus] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "nucleus raphC) pallidus" RELATED [BAMS:RPA] @@ -202061,6 +204382,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/94/Gr id: UBERON:0002158 name: principal inferior olivary nucleus def: "The inferior olivary nucleus that consists of the major laminar structure." [Wikipedia:Olivary_body#Olivary_nuclei] +subset: human_subset +subset: mouse_subset synonym: "chief inferior olivary nucleus" EXACT [] synonym: "convoluted olive" EXACT [NLXANAT:20081248] synonym: "inferior olivary complex principal olive" RELATED [BAMS:IOpr] @@ -202089,6 +204412,8 @@ is_a: UBERON:0007244 ! inferior olivary nucleus id: UBERON:0002159 name: medial accessory inferior olivary nucleus def: "The inferior olivary nucleus that lies between the primary olivary nucleus and the pyramid, and forms a curved lamina, the concavity of which is directed laterally." [Wikipedia:Olivary_body#Olivary_nuclei] +subset: human_subset +subset: mouse_subset synonym: "inferior olivary complex, medial accessory olive" EXACT [] synonym: "inferior olive medial nucleus" EXACT [] synonym: "inferior olive, medial nucleus" EXACT [] @@ -202109,6 +204434,8 @@ is_a: UBERON:0007244 ! inferior olivary nucleus [Term] id: UBERON:0002160 name: nucleus prepositus +subset: human_subset +subset: mouse_subset synonym: "nucleus praepositus" EXACT [BIRNLEX:2652] synonym: "nucleus praepositus hypoglossi" RELATED OMO:0003011 [NeuroNames:758] synonym: "nucleus prepositus hypoglossi" RELATED OMO:0003011 [NeuroNames:758] @@ -202140,6 +204467,8 @@ relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata id: UBERON:0002161 name: gracile nucleus def: "Nucleus in the caudal medulla that receive projections primarily from ipsilateral dorsal root ganglion cells via the posterior column of the spinal cord." [BIRNLEX:2643] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "Goll's nucleus" EXACT [] synonym: "golls nucleus" EXACT [BIRNLEX:2643] @@ -202175,6 +204504,8 @@ property_value: taxon_notes "in species with reduced hindlimbs (e.g. cetaceans) id: UBERON:0002162 name: area postrema def: "A small, rounded eminence on each side of the fourth ventricle, which receives nerve fibers from the solitary nucleus , spinal cord, and adjacent areas of the medulla. The area postrema lies outside the blood-brain barrier and its functions include acting as an emetic chemoreceptor." [MESH:A08.186.211.132.810.406.286, Wikipedia:Area_postrema] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -202217,6 +204548,8 @@ id: UBERON:0002163 name: inferior cerebellar peduncle def: "Regional part of medullary white matter (according to Neuronames) primarily found at the level of the open medulla, consisting of a large bundle of fibers projecting to and projecting from the cerebellum. The icp is continuous with the dorsal spinocerebellar tract and also contains a large number of fibers originating in the inferior olivary complex (MM)." [BIRNLEX:1691] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "corpus restiforme" EXACT OMO:0003011 [FMA:72615, FMA:TA] @@ -202252,6 +204585,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fc/Gr id: UBERON:0002164 name: tectobulbar tract def: "A long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the optic tectum towards target cells in the premotor reticulospinal system in the hindbrain." [GO:0034429] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "tecto-bulbar tract" EXACT [] synonym: "tractus tectobulbaris" RELATED OMO:0003011 [NeuroNames:811] @@ -202274,6 +204609,8 @@ alt_id: UBERON:0006225 def: "The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]." [GO:0003157] comment: fixed in GO to reflect FMA. See email to David/Varsha June 18 2010 subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -202318,6 +204655,8 @@ property_value: external_definition "Tunica intima which has as its parts the en id: UBERON:0002166 name: endocardium of atrium def: "Endocardium that is part of the atrium." [ZFIN:curator] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "atrial endocardium" EXACT [] @@ -202348,6 +204687,8 @@ relationship: part_of UBERON:0002081 ! cardiac atrium id: UBERON:0002167 name: right lung def: "Lung which consists of the right upper lobe, middle lobe and right lower lobe.[FMA]." [FMA:FMA, Wikipedia:Right_lung] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: EHDAA2:0001730 @@ -202374,6 +204715,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0002168 name: left lung def: "Lung which consists of the left upper lobe and left lower lobe.[FMA]." [FMA:FMA, Wikipedia:Left_lung] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: EHDAA2:0000943 @@ -202401,6 +204744,8 @@ id: UBERON:0002169 name: alveolar sac alt_id: UBERON:0008871 def: "The small terminal dilation of the alveolar ducts around which the alveoli form pocket-like clusters." [MP:0010902, Wikipedia:Alveolar_sac] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "air sac" RELATED [MP:0010902] @@ -202428,6 +204773,8 @@ relationship: part_of UBERON:0008874 {source="FMA"} ! pulmonary acinus id: UBERON:0002170 name: upper lobe of right lung def: "The lobe of the right lung that is closest to the head." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lobus superior (pulmo dexter)" EXACT OMO:0003011 [FMA:7333, FMA:TA] synonym: "lobus superior pulmonis dextri" EXACT OMO:0003011 [FMA:TA] @@ -202461,6 +204808,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l id: UBERON:0002171 name: lower lobe of right lung def: "The lobe of the right lung that is furtherst from the head." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "inferior lobe of right lung" EXACT [FMA:7337] synonym: "lobus inferior (pulmo dexter)" EXACT OMO:0003011 [FMA:7337, FMA:TA] @@ -202493,6 +204842,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l [Term] id: UBERON:0002172 name: alveolar atrium +subset: human_subset +subset: mouse_subset synonym: "alveolus of lung atrium" EXACT [OBOL:automatic] synonym: "atrium alveolare" EXACT [] synonym: "atrium of alveolus" EXACT [] @@ -202512,6 +204863,8 @@ id: UBERON:0002173 name: pulmonary alveolar duct def: "The respiratory conducting tubes distal to the respiratory bronchiole that lead to the alveolar sacs and the alveoli." [ISBN:0-683-40008-8, MGI:cwg, MP:0002271] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "alveolar duct" EXACT [MA:0000417] @@ -202535,6 +204888,8 @@ id: UBERON:0002174 name: middle lobe of right lung def: "In the human, the right lung is divided into three lobes (as opposed to two lobes on the left), superior, middle, and inferior, by two interlobular fissures: [WP,unvetted]." [Wikipedia:Middle_lobe_of_right_lung] comment: Called 'middle lobe of lung' in FMA +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "intermediate lobe of right lung" EXACT [] @@ -202568,6 +204923,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l id: UBERON:0002175 name: intermediolateral nucleus def: "The intermediolateral nucleus is a region of gray matter found in Rexed lamina VII of the spinal column. Rexed Lamina VII contains several well defined nuclei including the nucleus dorsalis, the intermediolateral cell column (lateral gray horn), and the sacral autonomic nucleus. It extends from the first thoracic through the third lumbar segment, and contains the autonomic motor neurons that give rise to the preganglionic fibers of the sympathetic system. [WP,unvetted]." [Wikipedia:Intermediolateral_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "intermediolateral nucleus of spinal cord" EXACT [] synonym: "nucleus intermediolateralis medullae spinalis" EXACT OMO:0003011 [FMA:73915, FMA:TA] @@ -202586,6 +204943,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Me id: UBERON:0002176 name: lateral cervical nucleus def: "A diffusely arranged nucleus located in the dorsal portions of the lateral funiculus at about cervical levels C1-C3; synaptic station for the spinocervicothalamic tract." [http://www.medilexicon.com/medicaldictionary.php?t=61506] +subset: human_subset +subset: mouse_subset xref: BAMS:LatC xref: BAMS:LCN xref: DMBA:17691 @@ -202600,6 +204959,8 @@ relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord id: UBERON:0002177 name: right main bronchus def: "The main bronchus on the right side." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Right_main_bronchus] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "bronchus principalis dexter" RELATED OMO:0003011 [Wikipedia:Right_main_bronchus] @@ -202628,6 +204989,8 @@ property_value: taxon_notes "Divides into 3 lobar bronchi in humans" xsd:string id: UBERON:0002178 name: left main bronchus def: "The main bronchus on the left side." [Wikipedia:Left_main_bronchus] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "bronchus principalis sinister" RELATED OMO:0003011 [Wikipedia:Left_main_bronchus] @@ -202656,6 +205019,8 @@ property_value: taxon_notes "Divides into 2 lobar bronchi in humans" xsd:string id: UBERON:0002179 name: lateral funiculus of spinal cord def: "The lateral mass of fibers on either side of the spinal cord, between the anterolateral and posterolateral sulci." [http://medical-dictionary.thefreedictionary.com/lateral+funiculus] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "funiculus lateralis medullae spinalis" RELATED OMO:0003011 [Wikipedia:Lateral_funiculus] @@ -202676,6 +205041,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Me id: UBERON:0002180 name: ventral funiculus of spinal cord def: "The white substance of the spinal cord lying on either side between the ventral median fissure and the ventral roots of the spinal nerves." [http://medical-dictionary.thefreedictionary.com/ventral+funiculus] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "anterior funiculus" EXACT [] @@ -202703,6 +205070,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Me id: UBERON:0002181 name: substantia gelatinosa def: "Gelatinous-appearing material in the dorsal horn of the spinal cord, consisting chiefly of Golgi type II neurons and some larger nerve cells, corresponding to Rexed lamina II." [MESH:A08.186.854.610.800, Wikipedia:Central_gelatinous_substance_of_spinal_cord_of_Rolando] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "central gelatinous substance of spinal cord" EXACT [] synonym: "gelatinous substance of dorsal horn of spinal cord" EXACT [] @@ -202736,6 +205105,8 @@ name: main bronchus def: "One of two branches of the trachea." [Wikipedia:Main_bronchus] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: uberon_slim synonym: "bronchus principalis" EXACT [FMA:7405] @@ -202770,6 +205141,8 @@ id: UBERON:0002183 name: lobar bronchus def: "The lobar bronchus is the major airway within the respiratory tree that starts by division of the principal bronchi on both sides and ends at the point of its own subdivision into tertiary or segmental bronchi[GO]." [GO:0060482, Wikipedia:Secondary_bronchus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: uberon_slim synonym: "bronchi lobaris" EXACT OMO:0003011 [Wikipedia:Secondary_bronchus] @@ -202809,6 +205182,8 @@ id: UBERON:0002184 name: segmental bronchus def: "The tertiary bronchi (also known as the segmental bronchi) arise from the secondary bronchi. The respiratory epithelium lining their lumen is surrounded by a layer of smooth muscle. This layer is composed of two ribbons of smooth muscle that spiral in opposite directions. The smooth muscle layer is surrounded by irregular plates of hyaline cartilage which help maintain the patency of the airway. Each of the tertiary bronchi serves a specific bronchopulmonary segment. There are 10 tertiary bronchi in the right lung, and eight in the left. The tertiary bronchi get smaller and divide into primary bronchioles. [WP,unvetted]." [Wikipedia:Segmental_bronchus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: uberon_slim synonym: "tertiary bronchus" EXACT [] @@ -202845,6 +205220,8 @@ name: bronchus def: "The upper conducting airways of the lung; these airways arise from the terminus of the trachea." [ISBN:0-397-51047-0, MESH:A04.411.125, MGI:cwg, MP:0002264] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -202885,6 +205262,8 @@ id: UBERON:0002186 name: bronchiole def: "The conducting airway of the lungs found terminal to the bronchi; these structures contain neither cartilage nor mucous-secreting glands; the epithelium of the bronchioles becomes thinner with each branching." [ISBN:0-397-51047-0, MGI:cwg, MP:0002267] comment: In some texts/references/ontologies, bronchiole has been used as an exact synonym of 'lobular bronchiole'. However, a 'lobular bronchiole' is a segment of a bronchiole. {xref="https://github.com/obophenotype/uberon/issues/2795"} +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "bronchioli" RELATED OMO:0003004 [] @@ -202918,6 +205297,8 @@ id: UBERON:0002187 name: terminal bronchiole def: "A bronchiole that is part of a secondary pulmonary lobule and the last conducting structure of a non-respiratory bronchiole; after this point, the airways have alveoli in their walls." [ISBN:0-397-51047-0, MGI:cwg, MP:0002268, PMID:16543587] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "bronchioli terminalis" RELATED OMO:0003011 [Wikipedia:Terminal_bronchiole] @@ -202944,6 +205325,8 @@ id: UBERON:0002188 name: respiratory bronchiole def: "A bronchiole that is the first segment of the respiratory zone." [ISBN:0123813611, Wikipedia:Respiratory_bronchiole] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "bronchiolus respiratorii" EXACT OMO:0003011 [Wikipedia:Respiratory_bronchiole] @@ -202969,6 +205352,8 @@ property_value: taxon_notes "mice have few or none of these structures, with the id: UBERON:0002189 name: outer cortex of kidney subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "kidney outer cortex" EXACT [MA:0001649] synonym: "outer renal cortex" EXACT [] xref: EMAPA:37485 {source="MA:th"} @@ -202987,6 +205372,8 @@ name: subcutaneous adipose tissue alt_id: UBERON:0008875 def: "A portion of adipose tissue that is part of the hypodermis, beneath the dermis." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fatty layer of subcutaneous tissue" EXACT [FMA:74315] synonym: "fatty layer of superficial fascia" RELATED [FMA:74315] @@ -203014,6 +205401,8 @@ property_value: external_definition "the superficial portion of the subcutaneous id: UBERON:0002191 name: subiculum def: "Part of the hippocampal formation that is bounded by the entorhinal cortex and area CA1. It is characterized on the CA1 border by an abrupt widening of the pyramidal cell layer. A molecular layer is present that is continuous with that of CA1, although the stratum radiatum is no longer present. The stratum oriens is also not present. adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 468)." [BIRNLEX:1305] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "gyrus parahippocampalis" RELATED [BTO:0003087] @@ -203056,6 +205445,8 @@ property_value: has_relational_adjective "subicular" xsd:string id: UBERON:0002192 name: ventricular system choroidal fissure def: "The narrow cleft along the medial wall of the lateral ventricle along the margins of which the choroid plexus is attached; it lies between the upper surface of the thalamus and lateral edge of the fornix in the central part of the ventricle and between the terminal stria and fimbria hippocampi in the inferior horn[ZFA]." [ISBN:0815318960, ZFA:0001075] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "chorioid fissure" RELATED [FMA:74512] synonym: "chorioidal fissure" RELATED [FMA:74512] @@ -203093,6 +205484,8 @@ property_value: external_ontology_notes "Most ontologies appear to have switched id: UBERON:0002193 name: hemolymphoid system def: "Anatomical cluster consisting of the hematopoietic system and the lymphoid system, or its analogs." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "haemolymphoid system" RELATED [] synonym: "hematolymphoid system" EXACT [] synonym: "lymphomyeloid complex" EXACT [] @@ -203109,6 +205502,8 @@ id: UBERON:0002194 name: capsule of lymph node def: "Capsule surrounding lymph node composed of connective tissue with some plain muscle fibers." [Wikipedia:Lymph_node#Capsule] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "capsula nodi lymphoidei" EXACT OMO:0003011 [FMA:74604, FMA:TA] synonym: "lymph node capsule" EXACT [] @@ -203136,6 +205531,8 @@ id: UBERON:0002195 name: trabecula of lymph node def: "Membranous process coming from capsule of lymph node[WP]." [Wikipedia:Lymph_node_trabeculae] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lymph node trabecula" EXACT [] synonym: "lymph node trabeculae" EXACT OMO:0003004 [] @@ -203158,6 +205555,8 @@ id: UBERON:0002196 name: adenohypophysis def: "The glandular, anterior lobe of the pituitary gland. The anterior pituitary regulates several physiological processes including stress, growth, and reproduction[WP]. The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin[ZFA]." [Wikipedia:Adenohypophysis, ZFIN:curator] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -203227,6 +205626,8 @@ property_value: taxon_notes "While in most basal fish and tetrapods the adenohyp id: UBERON:0002197 name: median eminence of neurohypophysis def: "Elevation on the ventral surface of the brain located at the zone of attachment between the hypothalamic floor and the hypophysis (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed., 2005, pg. 446)." [BIRNLEX:925] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "eminentia medialis (Shantha)" RELATED OMO:0003011 [NeuroNames:402] @@ -203274,6 +205675,8 @@ property_value: homology_notes "It (the hypophysis) develops embryonically in al id: UBERON:0002198 name: neurohypophysis def: "The posterior part of the pituitary gland that secretes hormones involved in blood pressure regulation such as oxytocin and antidiuretic hormon." [MP:0004164] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -203342,6 +205745,8 @@ id: UBERON:0002199 name: integument def: "The dermis, epidermis and hypodermis." [Wikipedia:Integument] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -203383,6 +205788,8 @@ id: UBERON:0002200 name: vasculature of head def: "Vasculature that is part of a head [Automatically generated definition]." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "adult head vascular network" EXACT [OBOL:automatic] synonym: "adult head vasculature" EXACT [OBOL:automatic] @@ -203406,6 +205813,8 @@ relationship: part_of UBERON:0000033 ! head id: UBERON:0002201 name: vasculature of trunk def: "A vasculature that is part of a trunk [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "torso vascular network" EXACT [OBOL:automatic] synonym: "torso vasculature" EXACT [OBOL:automatic] @@ -203427,6 +205836,8 @@ id: UBERON:0002202 name: submucosa of trachea def: "A submucosa that is part of a trachea." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "submucosa of windpipe" EXACT [OBOL:automatic] synonym: "submucous layer of trachea" RELATED [BTO:0002115] @@ -203452,6 +205863,8 @@ id: UBERON:0002203 name: vasculature of eye def: "Vasculature that is part of the eye region." [https://sourceforge.net/tracker/?func=detail&aid=3489658&group_id=76834&atid=994726, OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "eye vascular network" EXACT [OBOL:automatic] @@ -203479,6 +205892,8 @@ property_value: external_ontology_notes "not part of the eye in ZFA. Note this c id: UBERON:0002204 name: musculoskeletal system def: "Anatomical system that consists of the muscular and skeletal systems." [https://github.com/obophenotype/uberon/issues/77, VSAO:0000031, VSAO:curator] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculo-skeletal system" EXACT [] xref: AAO:0010546 @@ -203521,6 +205936,8 @@ name: manubrium of sternum def: "The cranial most segment of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[MP,WP]." [MP:0012668, Wikipedia:Manubrium] comment: May be cartilage in some species. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "manubrium" BROAD [] @@ -203552,6 +205969,8 @@ id: UBERON:0002206 name: mammillary body def: "One of two hemispherical bulges on the base of the posterior hypothalamus (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed., 2005, pg 455)." [BIRNLEX:865] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -203602,6 +206021,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/97/Gr id: UBERON:0002207 name: xiphoid process def: "A cartilaginous extension to the distal part of the sternum." [https://sourceforge.net/tracker/?func=detail&aid=3153001&group_id=76834&atid=1205376, Wikipedia:Xiphoid_process] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "metasternum" RELATED [Wikipedia:Xiphoid_process] @@ -203634,6 +206055,8 @@ id: UBERON:0002208 name: sternebra def: "One of the bony segments of the sternum[TFD]." [http://medical-dictionary.thefreedictionary.com/sternebra, Wikipedia:Sternebra] comment: Note that some definitions state that this a segment of the primordial sternum. +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "sternebral bone" RELATED [EMAPA:18724] @@ -203652,6 +206075,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/12/Il id: UBERON:0002209 name: fibrous joint def: "Nonsynovial joint in which the articulating bones or cartilages are connected by ligaments. Examples: sagittal suture, inferior tibiofibular syndesmosis, gomphosis.[FMA]." [FMA:FMA, Wikipedia:Fibrous_joint] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "articulatio fibrosa" EXACT [] @@ -203673,6 +206098,8 @@ property_value: external_definition "A joint where fibrous tissue such as ligame id: UBERON:0002210 name: syndesmosis def: "Fibrous joint in which the articulating bones or cartilages of the vertebral column and the limbs as well as articulating ossicles, are connected by skeletal ligaments or membranes. Examples: Intervertebral syndesmosis, inferior tibiofibular joint.[FMA]." [FMA:FMA, Wikipedia:Syndesmosis] +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: EMAPA:37465 {source="MA:th"} xref: FMA:7494 @@ -203687,6 +206114,8 @@ id: UBERON:0002211 name: nerve root def: "A continuation of the neuron projection bundle component of a nerve inside, crossing or immediately outside the central nervous system." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/286] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "initial segment of nerve" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "radix nervi" EXACT OMO:0003011 [] @@ -203711,6 +206140,8 @@ property_value: external_ontology_notes "FMA has 'central zone of nerve' which i id: UBERON:0002212 name: macula of saccule of membranous labyrinth def: "The oval neuroepithelial sensory receptor in the anterior wall of the saccule; hair cells of the neuroepithelium support the statoconial membrane and have terminal arborizations of vestibular nerve fibers around their bodies." [MGI:anna, MP:0004330] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -203747,6 +206178,8 @@ relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth id: UBERON:0002213 name: cartilaginous joint def: "Nonsynovial joint in which the articulating bones or cartilages are connected by cartilage. Examples: Spheno-occipital synchondrosis, first sternocostal joint, pubic symphysis.[FMA]." [FMA:FMA, Wikipedia:Cartilaginous_joint] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "articulatio cartilaginea" EXACT [] @@ -203768,6 +206201,8 @@ id: UBERON:0002214 name: macula of utricle of membranous labyrinth def: "The neuroepithelial sensory receptor in the inferolateral wall of the utricle; hair cells of the neuroepithelium support the statoconial membrane and have terminal arborizations of vestibular nerve fibers around their bodies; normally sensitive to linear acceleration in the longitudinal axis of the body and to gravitational influences." [MGI:anna, MP:0004333] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -203804,6 +206239,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/cb/Bi id: UBERON:0002215 name: synchondrosis def: "Cartilaginous joint in which the articulating bones or cartilages are connected by hyaline cartilage. Examples: spheno-occipital synchondrosis, first sternocostal joint.[FMA]." [FMA:FMA, Wikipedia:Synchondrosis] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cartilago epiphysialis" EXACT OMO:0003011 [FMA:7497, FMA:TA] @@ -203828,6 +206265,8 @@ property_value: editor_note "WP considers epiphyseal plates as subtypes of this" id: UBERON:0002216 name: symphysis def: "Cartilaginous joint in which the articulating bones or cartilages are connected by fibrocartilage. Examples: pubic symphysis, intervertebral symphysis, manubriosternal joint.[FMA]." [FMA:FMA, Wikipedia:Symphysis] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "secondary cartilaginous joint" EXACT [FMA:7498] xref: EMAPA:37758 {source="MA:th"} @@ -203844,6 +206283,8 @@ property_value: editor_note "consider adding fibrocartilage class" xsd:string id: UBERON:0002217 name: synovial joint def: "Joint in which the articulating bones or cartilages are connected by an articular capsule which encloses a synovial membrane and a synovial cavity. Examples: Temporomandibular joint, knee joint.[FMA]." [FMA:7501, Wikipedia:Synovial_joint] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -203876,6 +206317,8 @@ id: UBERON:0002218 name: tympanic ring def: "A C-shaped membranous bone that provides physical support to the tympanic membrane. The tympanic ring develops sequentially from an initial primordium in the first branchial arch growing in a circumferential fashion around the first pharyngeal cleft into the second branchial arch (Mallo and Gridley, 1996). In most mammals, the tympanic ring exists only during embryonic life, when it coordinates proper development and positioning of the eardrum (see below), and then becomes integrated into the temporal bone[PMID]." [MP:0000030, PMID:11237469] comment: Gene notes: Gsc and Prx1 are essential for tympanic ring development +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ectotympanic ring" RELATED [Wikipedia:Ectotympanic_ring] synonym: "os tympanicum" RELATED [EMAPA:19197] @@ -203900,6 +206343,8 @@ property_value: external_ontology_notes "in FMA, the tympanic ring is an anatomi id: UBERON:0002219 name: subfornical organ def: "Group of neurons situated on the ventral surface of the fornix at the level of the foramen of Monro in the third ventricle (adapted from Wikipedia via NIF)." [NLXANAT:100314, Wikipedia:Subfornical_organ] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "organum subfornicale" RELATED OMO:0003011 [Wikipedia:Subfornical_organ] xref: BAMS:SFO @@ -203929,6 +206374,8 @@ property_value: function_notes "induces drinking behavior after stimulation with id: UBERON:0002221 name: fontanelle def: "Anatomical structure that is a membranous gap between bones of the skull[TAO]. In humans: Fontanelles are soft spots on a baby's head which, during birth, enable the bony plates of the skull to flex, allowing the child's head to pass through the birth canal. The ossification of the bones of the skull cause the fontanelles to close over by a child's second birthday. The closures eventually form the sutures of the neurocranium. Although there are the two anterior and posterior fontanelles, there are two more fontanelles of interest, the mastoid fontanelle, and the sphenoidal fontanelle[WP]." [https://orcid.org/0000-0002-2825-0621, Wikipedia:Fontanelle] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -203956,6 +206403,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/1795" xsd id: UBERON:0002222 name: perichondrium def: "Fibrous connective tissue that surrounds cartilage." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/26, PSPUB:0000170, VSAO:0000036] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -203984,6 +206433,8 @@ property_value: external_definition "Portion of connective tissue which surround id: UBERON:0002223 name: endolymphatic sac def: "From the posterior wall of the saccule a canal, the ductus endolymphaticus, is given off; this duct is joined by the ductus utriculosaccularis, and then passes along the aquaeductus vestibuli and ends in a blind pouch, the endolymphatic sac, on the posterior surface of the petrous portion of the temporal bone, where it is in contact with the dura mater. Studies suggest that the endolymphatic duct and endolymphatic sac perform both absorptive and secretory, as well as phagocytic and immunodefensive,functions . [WP,unvetted]." [Wikipedia:Endolymphatic_sac] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "saccus endolymphaticus" EXACT [AAO:0000551] @@ -204011,6 +206462,8 @@ property_value: homology_notes "Many adult anamniotes have an endolymphatic duct id: UBERON:0002224 name: thoracic cavity def: "The part of the coelemic cavity lumen that is enclosed by the walls of the thorax." [UBERON:cjm, Wikipedia:Thoracic_cavity] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cavitas thoracis" EXACT OMO:0003011 [Wikipedia:Thoracic_cavity] @@ -204044,6 +206497,8 @@ property_value: taxon_notes "In many species, the diaphragm separates thoracic a id: UBERON:0002225 name: costal arch def: "The costal margin, sometimes referred to as the costal arch, is the medial margin formed by the false ribs, which in humans is from the eighth rib to the tenth rib." [Wikipedia:Costal_margin] +subset: human_subset +subset: mouse_subset synonym: "arcus costae" RELATED [Wikipedia:Costal_margin] synonym: "arcus costalis" RELATED OMO:0003011 [Wikipedia:Costal_margin] synonym: "costal margin" RELATED [Wikipedia:Costal_margin] @@ -204066,6 +206521,8 @@ property_value: external_ontology_notes "we treat margin and arch in FMA as equi id: UBERON:0002226 name: basilar membrane of cochlea def: "A stiff structural element that separates two liquid-filled tubes that run along the coil of the cochlea, the scala media and the scala tympani[WP]." [Wikipedia:Basilar_membrane] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "basilar membrane" EXACT [MA:0001190] @@ -204093,6 +206550,8 @@ id: UBERON:0002227 name: spiral organ of cochlea def: "The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "auditory papilla" RELATED SENSU [ISBN:9780387714691] @@ -204139,6 +206598,8 @@ id: UBERON:0002228 name: rib def: "An intersegmental rod-shaped bone that forms in the peritoneal membrane and attach to the vertebral parapophyses." [Wikipedia:Rib, ZFIN:curator] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -204180,6 +206641,8 @@ property_value: taxon_notes "In most vertebrates, ribs surround the chest. In so id: UBERON:0002229 name: interparietal bone def: "The bone of the cranium that lies above and anterior to the occipital bone in some mammals." [MP:0000077, Wikipedia:Interparietal_bone] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "inca bone" RELATED [Wikipedia:Interparietal_bone] synonym: "inter-parietal bone" EXACT [EMAPA:19017] @@ -204212,6 +206675,8 @@ property_value: taxon_notes "rarely present in humans" xsd:string {source="PMID: id: UBERON:0002230 name: head of rib def: "The head of the rib is the end of a rib closest to the vertebral column, with which it articulates with." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Head_of_rib] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "caput costae" RELATED OMO:0003011 [Wikipedia:Head_of_rib] synonym: "rib head" EXACT [] @@ -204230,6 +206695,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5c/Gr [Term] id: UBERON:0002231 name: body of rib +subset: human_subset +subset: mouse_subset synonym: "corpus costae" EXACT OMO:0003011 [FMA:7577, FMA:TA] synonym: "rib body" EXACT [] synonym: "rib shaft" EXACT [] @@ -204247,6 +206714,8 @@ relationship: part_of UBERON:0010388 {source="PMID:15906248"} ! proximal segment id: UBERON:0002232 name: olfactory gland def: "Bowman's glands (aka olfactory glands, glands of Bowman) are situated in the olfactory mucosa, beneath the olfactory epithelium, in the lamina propria, a connective tissue also containing fibroblasts, blood vessels, and bundles of fine axons from the olfactory neurons. The structure of the Bowman's glands consists of an acinus in the lamina propria and a secretory duct going out through the olfactory epithelium. Electron microscopy studies show that Bowman's glands contain cells with large secretory vesicles. Bowman's glands might secrete proteins such as Lysozyme, amylase and IgA similarly to serous glands. The exact composition of the secretions from Bowman's glands is unclear, but there is evidence that Bowman's glands do not produce odorant binding protein[WP]." [Wikipedia:Olfactory_glands] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "Bowman's gland" RELATED [] @@ -204270,6 +206739,8 @@ property_value: external_definition "Multicellular mucous glands of the olfactor id: UBERON:0002233 name: tectorial membrane of cochlea def: "The overlaying membrane of the cochlear duct, an extracellular matrix of the inner ear that contacts the stereocilia bundles of specialized sensory hair cells; sound induces movement of these hair cells relative to the tectorial membrane, deflects the stereocilia, and leads to fluctuations in hair cell membrane potential, transducing sound into electrical signals[MP,modified]." [J:77634, MGI:anna, MP:0003149] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "tectorial membrane" EXACT [MA:0001199] @@ -204297,6 +206768,8 @@ property_value: taxon_notes "in some squamate lineages, the tectorial membrane m id: UBERON:0002234 name: proximal phalanx of manus def: "A proximal phalanx that is part of a finger [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hand proximal phalanx" EXACT [MA:0001395] synonym: "phalanx proximalis manus" EXACT OMO:0003011 [FMA:75816, FMA:TA] @@ -204324,6 +206797,8 @@ relationship: proximally_connected_to UBERON:0002374 ! metacarpal bone id: UBERON:0002235 name: tubercle of rib def: "The tubercle of a rib is an eminence on the posterior surface, at the junction of the neck and body of the rib, and nearer the lower than the upper border. It consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrae to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs[WP]." [Wikipedia:Tubercle_(rib)] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "rib tubercle" EXACT [] @@ -204347,6 +206822,8 @@ relationship: part_of UBERON:0010388 {source="PMID:15906248"} ! proximal segment id: UBERON:0002236 name: costal cartilage def: "The nonvascular, resilient, flexible hyaline connective tissue that connects the end of a true rib to the sternum or the end of a false rib with the with the lower border of the costal cartilage above it." [ISBN:0-8036-0655-9, MGI:smb, MP:0006432] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cartilagines costales" RELATED OMO:0003011 [Wikipedia:Costal_cartilage] @@ -204370,6 +206847,8 @@ property_value: editor_note "we currently model this as part of the rib, is this id: UBERON:0002237 name: true rib def: "A rib that is ventrally connected to the sternum." [ISBN:0073040584, Wikipedia:True_ribs] +subset: human_subset +subset: mouse_subset synonym: "costa vera" EXACT [] synonym: "costae verae" RELATED OMO:0003004 [Wikipedia:True_ribs] xref: EMAPA:37774 {source="MA:th"} @@ -204389,6 +206868,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3d/Gr id: UBERON:0002238 name: false rib def: "A rib that is not directly ventrally connected to the sternum." [ISBN:0073040584, Wikipedia:False_rib] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "asternal ribs" RELATED [Wikipedia:False_ribs] synonym: "costa spuria" EXACT [] @@ -204405,6 +206886,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3d/Gr id: UBERON:0002239 name: floating rib def: "A rib that is not connected to sternum or sternal cartilage." [ISBN:0073040584, Wikipedia:Floating_rib] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "costa fluitante" EXACT OMO:0003011 [] @@ -204428,7 +206911,9 @@ def: "Part of the central nervous system located in the vertebral canal continuo subset: cumbo subset: efo_slim subset: human_reference_atlas +subset: human_subset subset: major_organ +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -204494,6 +206979,8 @@ property_value: homology_notes "(...) at some stage of its development, every ch id: UBERON:0002241 name: chondrocranium def: "Endoskeletal elements that encase the brain, nose, inner ear[cjm]. that part of the neurocranium formed by endochondral ossification and comprising the bones of the base of the skull[TFD]." [http://medical-dictionary.thefreedictionary.com/chondrocranium, Wikipedia:Chondrocranium] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "calvarium" RELATED [MA:0000317] synonym: "neurocranium" RELATED INCONSISTENT [MA:0000317] @@ -204517,6 +207004,8 @@ id: UBERON:0002242 name: nucleus pulposus def: "The jelly-like substance in the middle of the spinal disc which is a remnant of the notochord." [MGI:llw2, MP:0006392] comment: Function noyes: It functions to distribute hydraulic pressure in all directions within each disc under compressive loads. +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "nucleus propulsus" RELATED [Wikipedia:Nucleus_pulposus] @@ -204551,6 +207040,8 @@ property_value: structure_notes "The nucleus pulposus consists of chondrocytes, id: UBERON:0002243 name: cutaneous vein def: "One of a number of veins in the subcutaneous tissue that empty into deep veins." [http://www.thefreedictionary.com/cutaneous+vein] +subset: human_subset +subset: mouse_subset xref: EMAPA:37506 {source="MA:th"} xref: FMA:76720 xref: MA:0002098 @@ -204565,6 +207056,8 @@ id: UBERON:0002244 name: premaxilla alt_id: UBERON:0002253 def: "One of the bones of the upper jaw situated between and in front of the maxillae[VHOG]." [VHOG:0000426, Wikipedia:Incisive_bone, Wikipedia:Premaxilla] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -204609,6 +207102,8 @@ property_value: homology_notes "(...) in all higher vertebrates a premaxilla is id: UBERON:0002245 name: cerebellar hemisphere def: "A paired regions of the cerebellum that lie outside and lateral to the central vermis[MP]. The cerebellum consists of three parts, a median and two lateral, which are continuous with each other, and are substantially the same in structure. The median portion is constricted, and is called the vermis, from its annulated appearance which it owes to the transverse ridges and furrows upon it; the lateral expanded portions are named the hemispheres. The lateral hemisphere is considered the portion of the cerebellum to develop most recently. [WP,unvetted]." [MP:0009959, Wikipedia:Cerebellar_hemisphere] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cerebellar hemisphere" EXACT [] @@ -204645,6 +207140,8 @@ id: UBERON:0002246 name: dorsal thoracic nucleus def: "Two column-shaped nuclear masses formed by large cells. Clarke's nuclei are located in the regions dorsolateral to the central canal in the thoratic and upper lumbar segments." [NLXANAT:20090102] comment: Created by Sarah M. Maynard +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "Clarke's column" EXACT [] synonym: "Clarke's nuclei" RELATED OMO:0003004 [NLXANAT:20090102] @@ -204673,6 +207170,8 @@ property_value: external_definition "Clarke's column (column of Clarke, dorsal n id: UBERON:0002247 name: uterine horn def: "Either one of the pair of tubular extensions from the uterine body where the uterus and the uterine tubes meet; uterine horns are anterior Mullerian duct-derived structures." [MGI:anna, MP:0009085] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cornu uteri" RELATED [BTO:0004235] @@ -204697,6 +207196,8 @@ property_value: taxon_notes "The uterine horns are far more prominent in other a id: UBERON:0002248 name: transverse pericardial sinus def: "The passage between the venous and arterial mesocardia -i.e., between the aorta and pulmonary artery in front and the superior vena cava behind. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside.[WP,unvetted]." [Wikipedia:Pericardial_sinus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "Thiele's canal" EXACT [FMA:77132] synonym: "transverse sinus" BROAD [] @@ -204716,6 +207217,8 @@ id: UBERON:0002249 name: median artery def: "An artery found in the forearm, between the radial artery and ulnar artery. It runs with the median nerve and supplies the same structures as that nerve. It may be unilateral or bilater." [Wikipedia:Median_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:37103 {source="MA:th"} xref: FMA:77142 xref: MA:0001999 @@ -204733,6 +207236,8 @@ id: UBERON:0002250 name: popliteal artery def: "The continuation of the femoral artery coursing through the popliteal fossa; it divides into the anterior and posterior tibial arteries." [MESH:A07.231.114.681] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria poplitea" RELATED OMO:0003011 [Wikipedia:Popliteal_artery] xref: EMAPA:37109 {source="MA:th"} @@ -204754,6 +207259,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/a/a2/P id: UBERON:0002251 name: iliocostalis muscle def: "The iliocostalis is the muscle immediately lateral to the longissimus that is the nearest to the furrow that separates the epaxial muscles from the hypaxial. It lies very deep to the fleshy portion of the serratus ventralis (serratus anterior). [WP,unvetted]." [Wikipedia:Iliocostalis] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "iliocostal muscle" EXACT [] synonym: "iliocostalis" EXACT [] @@ -204778,6 +207285,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/89/Il id: UBERON:0002252 name: splenius def: "A superficial postvertebral muscle innervated by the posterior ramus of the cervical spinal nerve with origins in the upper thoracic and lower cervical spinous processes whose actions are to extend and ipsilaterally rotate the head and neck. Examples: splenius capitis, splenius cervicis." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Splenius] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "splenius muscle" EXACT [] xref: EMAPA:37701 {source="MA:th"} @@ -204797,6 +207306,8 @@ property_value: external_ontology_notes "Muscle of neck in MA" xsd:string {exter id: UBERON:0002254 name: thyroglossal duct def: "An embryological anatomical structure that forms an open connection between the initial area of development of the thyroid gland and its final position; it is located exactly midline, between the anterior 2/3rds and posterior 1/3rd of the tongue; this duct normally atrophies and closes off as the foramen cecum before birth." [MP:0013235] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ductus thyroglossalis" RELATED OMO:0003011 [Wikipedia:Thyroglossal_duct] @@ -204823,6 +207334,8 @@ id: UBERON:0002255 name: vomeronasal organ def: "An organ thought to supplement the olfactory system in receiving pheromonic communication. The sensory part of the organ is in two long, thin sacs, situated on either side of the nasal septum at its base." [VHOG:0000665] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -204864,6 +207377,8 @@ property_value: taxon_notes "Generally formed only in tetrapods; lungfish have r id: UBERON:0002256 name: dorsal horn of spinal cord def: "The pronounced, dorsolaterally oriented ridge of grey matter in each lateral half of the spinal cord[MP]. the dorsal (more towards the back) grey matter of the spinal cord. It receives several types of sensory information from the body, including light touch, proprioception, and vibration. This information is sent from receptors of the skin, bones, and joints through sensory neurons whose cell bodies lie in the dorsal root ganglion[WP]. The dorsal region of the mature spinal cord contains neurons that process and relay sensory input[GO]." [GO:0021516, https://sourceforge.net/tracker/?group_id=36855&atid=440764, MP:0006282, Wikipedia:Posterior_horn_of_spinal_cord] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "columna grisea posterior medullae spinalis" EXACT OMO:0003011 [FMA:256530, FMA:TA] @@ -204917,6 +207432,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Me id: UBERON:0002257 name: ventral horn of spinal cord def: "The ventral grey column of the spinal cord[MP]. The neurons of the ventral region of the mature spinal cord participate in motor output[GO]." [GO:0021517, https://sourceforge.net/tracker/?group_id=36855&atid=440764, MP:0005112, Wikipedia:Anterior_horn_of_spinal_cord] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "anterior column" RELATED [Wikipedia:Anterior_horn_of_spinal_cord] @@ -204967,6 +207484,8 @@ property_value: external_definition "The anterior horn of the spinal cord (or an id: UBERON:0002258 name: dorsal funiculus of spinal cord def: "The white substance of the spinal cord lying on either side between the posterior median sulcus and the dorsal root." [http://medical-dictionary.thefreedictionary.com/dorsal+funiculus] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "dorsal funiculus" EXACT [ZFA:0000501] @@ -204993,6 +207512,8 @@ property_value: editor_note "ZFA class is undefined. We currently do not place t id: UBERON:0002259 name: corpora quadrigemina def: "Either of the two pairs of colliculi on the dorsal surface of the midbrain composed of white matter externally and gray matter within, the superior pair containing correlation centers for optic reflexes and the inferior pair containing correlation centers for auditory reflexes[BTO]." [BTO:0001710, Wikipedia:Corpora_quadrigemina] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "colliculi" EXACT [MP:0000899] @@ -205025,6 +207546,8 @@ id: UBERON:0002260 name: ventral root of spinal cord def: "The ventral roots contain efferent motor axons. Similar to the dorsal roots, the ventral roots continue out from the spinal column, and meet and mix with their corresponding dorsal nerve root at a point after the ganglion." [NLXANAT:20090209] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -205068,6 +207591,8 @@ property_value: external_ontology_notes "FMA:77516 xref is a 'general anatomical id: UBERON:0002261 name: dorsal root of spinal cord def: "The dorsal roots contain afferent sensory axons. The dorsal roots of each side continue outwards, along the way forming a dorsal root ganglion (also called a spinal ganglion)." [NLXANAT:20090208] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -205109,6 +207634,8 @@ id: UBERON:0002262 name: celiac ganglion def: "The celiac ganglia are two large irregularly shaped masses of nerve tissue in the upper abdomen. Part of the sympathetic subdivision of the autonomic nervous system (ANS), the two celiac ganglia are the largest ganglia in the ANS, and they innervate most of the digestive tract. They have the appearance of lymph glands and are placed on either side of the midline in front of the crura of the diaphragm, close to the suprarenal glands (also called adrenal glands). The ganglion on the right side is placed behind the inferior vena cava. They are sometimes referred to as the semilunar ganglia or the solar ganglia. [WP,unvetted]." [Wikipedia:Celiac_ganglia] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "coeliac ganglion" EXACT [FMA:77570] xref: BAMS:GCE @@ -205130,6 +207657,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/63/Gr id: UBERON:0002263 name: lentiform nucleus def: "The lentiform nucleus or lenticular nucleus comprises the putamen and the globus pallidus within the basal ganglia. It is a large, cone-shaped mass of gray matter just lateral to the internal capsule. [WP,unvetted]." [Wikipedia:Lentiform_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "lenticular nucleus" RELATED [BTO:0002250] synonym: "nucleus lenticularis" EXACT [BTO:0002250] @@ -205161,6 +207690,8 @@ id: UBERON:0002264 name: olfactory bulb def: "A bulbous anterior projection of the olfactory lobe that is the place of termination of the olfactory nerves and is especially well developed in lower vertebrates (as fishes)[BTO]." [BTO:0000961, Wikipedia:Olfactory_bulb] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -205224,6 +207755,8 @@ id: UBERON:0002265 name: olfactory tract def: "White matter tract that contains projections from the olfactory bulb to other parts of the brain." [BIRNLEX:1663, http://orcid.org/0000-0002-6601-2165, ISBN:0471888893, Wikipedia:Olfactory_tract] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "olfactory peduncle" RELATED [BTO:0003647] @@ -205263,6 +207796,8 @@ property_value: taxon_notes "in animals with a long snout, the olfactory tract i id: UBERON:0002266 name: anterior olfactory nucleus def: "Laminated structure lying caudal to the olfactory bulb." [BIRNLEX:1085] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "anterior olfactory cortex" RELATED [BTO:0003649] synonym: "AON" RELATED [BTO:0003649] @@ -205302,6 +207837,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0002267 name: laterodorsal tegmental nucleus def: "The laterodorsal tegmental nucleus (or lateroposterior tegmental nucleus) is a nucleus situated in the brainstem, spanning the midbrain tegmentum and the pontine tegmentum. [WP,unvetted]." [Wikipedia:Laterodorsal_tegmental_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "anterodorsal tegmental nucleus" RELATED [BAMS:LDT] synonym: "lateroposterior tegmental nucleus" EXACT [] @@ -205333,6 +207870,8 @@ id: UBERON:0002268 name: olfactory organ def: "An organ that houses olfactory neurons and is responsible for the sense of smell. Examples include the vertebrate nose and the Drosophila dorsal organ." [UBERON:cjm] subset: functional_classification +subset: human_subset +subset: mouse_subset synonym: "main olfactory organ" NARROW [] synonym: "olfactory neuroepithelium" RELATED [BTO:0001772] synonym: "olfactory organ" EXACT [BTO:0001772] @@ -205360,6 +207899,8 @@ property_value: external_ontology_notes "fma general anatomical term. xao has no id: UBERON:0002269 name: pupillary membrane def: "The pupillary membrane in mammals exists in the fetus as a source of blood supply for the lens. It normally atrophies from the time of birth to the age of four to eight weeks." [Wikipedia:Persistent_pupillary_membrane] +subset: human_subset +subset: mouse_subset xref: FMA:77663 xref: MA:0001293 xref: Wikipedia:Persistent_pupillary_membrane @@ -205368,12 +207909,15 @@ is_a: UBERON:0004121 ! ectoderm-derived structure relationship: located_in UBERON:0001771 {source="MA-modified"} ! pupil relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001769 ! iris +relationship: part_of UBERON:8450003 ! embryonic craniocervical region [Term] id: UBERON:0002270 name: hyaloid artery def: "An artery that is part of the optic stalk of the eye and extends from the optic disc through the vitreous humor to the lens." [Wikipedia:Hyaloid_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -205411,6 +207955,8 @@ property_value: taxon_notes "In humans, Usually fully regressed before birth, it [Term] id: UBERON:0002271 name: periventricular zone of hypothalamus +subset: human_subset +subset: mouse_subset synonym: "hypothalamus periventricular zone" EXACT [] synonym: "periventricular zone of the hypothalamus" RELATED [BAMS:PVZ] synonym: "zona periventricularis hypothalamicae" EXACT OMO:0003011 [FMA:77682, FMA:TA] @@ -205428,6 +207974,8 @@ relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002272 name: medial zone of hypothalamus +subset: human_subset +subset: mouse_subset synonym: "hypothalamic medial zone behavioral control column" RELATED [BAMS:MEZ] synonym: "hypothalamus medial zone" EXACT [] synonym: "medial zone of the hypothalamus" RELATED [BAMS:MEZ, BAMS:MZ] @@ -205447,6 +207995,8 @@ relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002273 name: lateral zone of hypothalamus +subset: human_subset +subset: mouse_subset synonym: "hypothalamic lateral zone" RELATED [BAMS:LZ] synonym: "hypothalamus lateral zone" EXACT [] synonym: "lateral zone of the hypothalamus" RELATED [BAMS:LZ] @@ -205464,6 +208014,8 @@ relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002274 name: perifornical nucleus +subset: human_subset +subset: mouse_subset xref: BAMS:PeF xref: DHBA:11578 xref: EMAPA:37716 {source="MA:th"} @@ -205478,6 +208030,8 @@ relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus id: UBERON:0002275 name: reticular formation def: "A composite substructure of the brainstem that consists of the midbrain reticular formation, the pontine reticular formation and the medullary reticular formation ( Carpenter-1983 )." [NeuroNames:1223] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "brain stem reticular formation" EXACT [NeuroNames:1223] synonym: "brainstem reticular formation" EXACT [MA:0003185, NeuroNames:1223] @@ -205504,6 +208058,8 @@ id: UBERON:0002276 name: lamina of spiral limbus def: "The osseous spiral lamina consists of two plates of bone, and between these are the canals for the transmission of the filaments of the acoustic nerve. On the upper plate of that part of the lamina which is outside the vestibular membrane, the periosteum is thickened to form the limbus spiralis (or limbus laminæ spiralis), this ends externally in a concavity, the sulcus spiralis internus, which represents, on section, the form of the letter C. [WP,unvetted]." [Wikipedia:Limbus_laminae_spiralis] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "limbus lamina spiralis" EXACT [MA:0001191] @@ -205525,6 +208081,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a5/Gr id: UBERON:0002277 name: spiral sulcus def: "A concavity in the floor of the cochlear duct, formed by either the overhanging vestibular lip (inner spiral sulcus) or the spiral prominence and the spiral organ (outer spiral sulcus)." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "sulcus spiralis" EXACT [] xref: EMAPA:35800 xref: FMA:77744 @@ -205536,6 +208094,8 @@ relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous id: UBERON:0002278 name: perilymphatic space def: "The fluid-filled space separating the membranous from the osseous labyrinth." [Dorlands_Medical_Dictionary:MerckSource] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "cisterna perilymphatica" RELATED [http://medical-dictionary.thefreedictionary.com/perilymphatic+space] synonym: "Retzius space" RELATED [] @@ -205554,6 +208114,8 @@ relationship: part_of UBERON:0001846 {source="ZFA"} ! internal ear id: UBERON:0002279 name: vestibular aqueduct def: "At the hinder part of the medial wall of the vestibule is the orifice of the vestibular aqueduct, which extends to the posterior surface of the petrous portion of the temporal bone. It transmits a small vein, and contains a tubular prolongation of the membranous labyrinth, the ductus endolymphaticus, which ends in a cul-de-sac between the layers of the dura mater within the cranial cavity. [WP,unvetted]." [Wikipedia:Vestibular_aqueduct] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "aqueductus vestibuli" RELATED OMO:0003011 [Wikipedia:Vestibular_aqueduct] @@ -205574,6 +208136,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/16/Gr id: UBERON:0002280 name: otolith def: "Acellular structure composed of calcium carbonate located in the otolith organ." [Wikipedia:Otolith, ZFIN:curator] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -205614,6 +208178,8 @@ property_value: taxon_notes "Mammals have many tiny otoconia and fish have three id: UBERON:0002281 name: vestibular membrane of cochlear duct def: "A membrane inside the cochlea of the inner ear. It separates scala media from scala vestibuli. Together with the basilar membrane it creates a compartment in the cochlea filled with endolymph, which is important for the function of the organ of Corti. It primarily functions as a diffusion barrier, allowing nutrients to travel from the perilymph to the endolymph of the membranous labyrinth. Histologically, the membrane is composed of two layers of flattened epithelium, separated by a basal lamina. Its structure suggests that its function is transport of fluid and electrolytes." [Wikipedia:Reissner's_membrane] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "membrana vestibularis ductus cochlearis" EXACT [MP:0006021] @@ -205643,6 +208209,8 @@ id: UBERON:0002282 name: stria vascularis of cochlear duct def: "The upper portion of the spiral ligament contains numerous capillary loops and small blood vessels, and is termed the stria vascularis. It produces endolymph for the scala media, one of the three fluid-filled compartments of the cochlea. [WP,unvetted]." [Wikipedia:Stria_vascularis] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "psalterial cord" EXACT [MP:0000048] @@ -205675,6 +208243,8 @@ property_value: external_ontology_notes "represented as a wall in FMA. MESH def id: UBERON:0002283 name: nail matrix def: "Portion of tissue (or germinal matrix) upon which the nail rests, the part of the nail bed that extends beneath the nail root and contains nerves, lymph and blood vessels. The matrix is responsible for the production of the cells that become the nail plate. The width and thickness of the nail plate is determined by the size, length, and thickness of the matrix, while the shape of the fingertip itself determines if the nail plate is flat, arched, or hooked. The matrix will continue to grow as long as it receives nutrition and remains in a healthy condition. As new nail plate cells are incubated, they emerge from the matrix round and white to push older nail plate cells forward; and in this way yet older cells become compressed, flat, and translucent, making the pink colour of the capillaries in the nail bed below visible[WP]." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "keratogenous membrane" EXACT [Wikipedia:Nail_(anatomy)#Parts_of_the_nail] synonym: "matrix unguis" EXACT OMO:0003011 [Wikipedia:Nail_(anatomy)#Parts_of_the_nail] @@ -205693,6 +208263,8 @@ relationship: site_of GO:0008283 ! cell population proliferation id: UBERON:0002284 name: hyponychium def: "Epithelium located beneath the nail plate at the junction between the free edge and the skin of the fingertip. It forms a seal that protects the nail bed." [Wikipedia:Hyponychium] +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: EMAPA:37508 {source="MA:th"} xref: FMA:77860 @@ -205713,6 +208285,8 @@ def: "A brain ventricle that is part of a telencephalon. In mammals and species comment: modeled as space in EHDAA2 subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -205771,6 +208345,8 @@ id: UBERON:0002286 name: third ventricle def: "Part of the ventricular system of the brain, forming a single large cavity in the midline of the diencephalon; it is continuous with the lateral ventricles through the interventricular foramen and the fourth ventricle through the cerebral aqueduct. (Maryann Martone)." [BIRNLEX:714] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -205817,6 +208393,8 @@ property_value: homology_notes "The early development of most vertebrate brains id: UBERON:0002287 name: optic recess of third ventricle def: "Recess in third ventricle lying in front of the optic chiasm at the base of the lamina terminalis." [NLX:144280] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "optic recess" EXACT [] @@ -205855,6 +208433,8 @@ property_value: external_definition "The optic recess of the third ventricle, i. id: UBERON:0002288 name: choroid plexus of third ventricle def: "Part of choroid plexus contained in the third ventricle." [NLX:18606] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "3rd ventricle choroid plexus" RELATED [] synonym: "chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic] @@ -205889,6 +208469,8 @@ alt_id: UBERON:0005684 def: "Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone)." [BIRNLEX:1261] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -205950,6 +208532,8 @@ property_value: homology_notes "The early development of most vertebrate brains id: UBERON:0002290 name: choroid plexus of fourth ventricle def: "Choroid plexus of the fourth ventricle." [NLX:27388] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "4th ventricle choroid plexus" RELATED [] synonym: "chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic] @@ -205986,6 +208570,8 @@ alt_id: UBERON:0002220 def: "Spinal cord structure that is part of the ventricular system and is filled with cerebral-spinal fluid and runs the length of the spinal cord." [PMID:23409159, ZFIN:curator] comment: previously mapped to FMA:75364. Note some ontologies (NIF, SNOMED) subdivide this into lumbar, thoracic, etc. Note we follow FMA in distinguishing between the canal and the lumen subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -206028,6 +208614,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Me id: UBERON:0002292 name: costovertebral joint def: "The costovertebral joints are the articulations that connect the heads of the ribs with the bodies of the thoracic vertebrae. Joining of ribs to the vertebrae occurs at two places, the head and the tubercle of the rib. Two convex facets from the head attach to two adjacent vertebrae. This forms a trochoid joint, which is strengthened by the ligament of the head and the intercapital ligament. Articulation of the tubercle is to the transverse process of the adjacent vertebrae. This articulation is reinforced by the dorsal costotransverse ligament. [WP,unvetted]." [Wikipedia:Costovertebral_joint] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "costal head joint" RELATED [FMA:7951] synonym: "costocorporeal joint" RELATED [FMA:7951] @@ -206055,6 +208643,8 @@ property_value: external_ontology_notes "FMA has both this and joint of head of id: UBERON:0002293 name: costochondral joint def: "A bars of hyaline cartilage located between the distal part of a rib and a costal cartilage, connecting the ribs to the sternum ." [HP:0000920, Wikipedia:Costochondral_joint] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "articulatio costochondralis" EXACT [FMA:7956, FMA:TA] @@ -206082,6 +208672,8 @@ property_value: taxon_notes "In humans, Joints between costal cartilages of ribs id: UBERON:0002294 name: biliary system def: "Organ system subdivision that consists of the organs and ducts that are involved in the production and transportation of bile. In most species this is the gallbladder and the bile ducts (biliary tree)." [Wikipedia:Biliary_system] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "biliary apparatus" EXACT [FMA:79646] @@ -206117,6 +208709,8 @@ id: UBERON:0002295 name: scala media def: "The division of the spiral canal of the cochlea that contains the organ of Corti (the neuroepithelial receptor organ for hearing)." [MGI:anna, MP:0003169, PMID:1680563] comment: located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Scala media houses the organ of Corti. [Wikipedia:Scala_media] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cochlear duct" RELATED [] @@ -206136,6 +208730,8 @@ property_value: editor_note "TODO - check cochlear duct vs cochlear aqueduct vs id: UBERON:0002296 name: dorsal mesentery def: "The mesentery that originates from the dorsal side of the peritoneal cavity[ZFA]." [Wikipedia:Dorsal_mesentery, Wikipedia:Mesentery#Development, ZFIN:curator] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "dorsal mesogastrium" RELATED [Wikipedia:Dorsal_mesentery] @@ -206163,6 +208759,8 @@ property_value: external_definition "The mesentery that originates from the dors id: UBERON:0002297 name: cerumen def: "The yellow or brown waxy secretions produced by vestigial apocrine sweat glands in the external ear canal[MESH]." [MESH:A12.200.147] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "ear wax" EXACT [] synonym: "earwax" EXACT [] @@ -206187,6 +208785,8 @@ name: brainstem def: "Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,MP,generalized]." [ISBN:0471888893, MP:0005277, Wikipedia:Brainstem, ZFA:0001707] comment: 'brainstem' is a loose term that sometimes refers to the ventral parts o the brain except for any part of the telencephalon - sometimes it includes the diencephalon or subpallial telencephalon structures (ISBN:0471888893). Here we use it in a more restriced sense, to include only the medulla oblongata, pons (when present) and the midbrain tegmentum (following the ZFA definitions). subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -206238,6 +208838,8 @@ name: alveolus of lung def: "Spherical outcropping of the respiratory bronchioles and primary site of gas exchange with the blood. Alveoli are particular to mammalian lungs. Different structures are involved in gas exchange in other vertebrates[WP]." [Wikipedia:Pulmonary_alveolus] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "alveoli" RELATED OMO:0003004 [BTO:0000060] @@ -206284,6 +208886,8 @@ consider: FMA:82553 id: UBERON:0002301 name: layer of neocortex def: "One of the layers of the neocortex. These layers are defined by distinctive populations of cells based on somata size, shape, or density, that are aligned into sheets." [http://orcid.org/0000-0002-6601-2165, ISBN-10:0-87893-742-0, PMID:29081739] +subset: human_subset +subset: mouse_subset synonym: "cerebral cortex layer" RELATED [MA:0000186] synonym: "cortical layer" BROAD [] synonym: "lamina of neocortex" RELATED [FMA:83138] @@ -206304,6 +208908,8 @@ id: UBERON:0002302 name: myocardium of atrium def: "The atrial part of middle layer of the heart, comprised of involuntary muscle." [ISBN:0-683-40008-8, MP:0010493] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "atrial myocardium" EXACT [ZFA:0001374] @@ -206329,6 +208935,8 @@ id: UBERON:0002303 name: juxtaglomerular apparatus def: "An anatomical structure which consists of juxtaglomerular cells, extraglomerular mesangial cells and the macula densa. The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]. a microscopic structure in the kidney, which regulates the function of each nephron. The juxtaglomerular apparatus is named for its proximity to the glomerulus: it is found between the vascular pole of the renal corpuscle and the returning distal convoluted tubule of the same nephron. This location is critical to its function in regulating renal blood flow and glomerular filtration rate. The three cellular components of the apparatus are the macula densa, extraglomerular mesangial cells, and juxtaglomerular cells (also known as granular cells)[WP]." [GO:0072206, Wikipedia:Juxtaglomerular_apparatus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "complexus juxtaglomerularis" EXACT OMO:0003011 [] @@ -206355,6 +208963,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002304 name: layer of dentate gyrus def: "One of the three layers of the dentate gyrus of the hippocampal formation." [http://orcid.org/0000-0002-6601-2165, PMCID:PMC2492885] +subset: human_subset +subset: mouse_subset synonym: "dentate gyrus cell layer" EXACT [] synonym: "dentate gyrus layer" EXACT [] xref: EMAPA:35278 @@ -206372,6 +208982,8 @@ id: UBERON:0002305 name: layer of hippocampus def: "The layers of the laminar structure of the hippocampus." [MP:0000813, Wikipedia:Hippocampus_anatomy#Hippocampal_Cells_and_Layers] comment: EDITOR_NOTE TODO - check NIF xref +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cytoarchitectural fields of hippocampal formation" EXACT [BIRNLEX:1192] synonym: "hippocampus layer" EXACT [] @@ -206395,6 +209007,8 @@ id: UBERON:0002306 name: nasal mucus def: "Mucus produced in the nasal cavity, by the respiratory segment of the nasal mucosa." [http://orcid.org/0000-0002-6601-2165] comment: EDITOR_NOTE TODO - split nasal vs respiratory tract? +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "respiratory mucus" RELATED [BTO:0003603] xref: BTO:0003603 @@ -206415,6 +209029,8 @@ property_value: function_notes "protects the olfactory epithelium and allows odo id: UBERON:0002307 name: choroid plexus of lateral ventricle def: "Part of choroid plexus contained in the lateral ventricle." [NLX:32548] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of lateral ventricle" EXACT [] @@ -206445,6 +209061,8 @@ relationship: part_of UBERON:0002285 ! telencephalic ventricle id: UBERON:0002308 name: nucleus of brain def: "A neural nucleus that is part of the brain." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "brain nuclei" RELATED OMO:0003004 [ZFA:0005575] synonym: "brain nucleus" EXACT [] xref: EMAPA:35185 @@ -206464,6 +209082,8 @@ relationship: part_of UBERON:0003528 ! brain gray matter id: UBERON:0002309 name: medial longitudinal fasciculus def: "The medial longitudinal fasciculus (MLF) is a pair of crossed fiber tracts, one on each side of the brainstem. These bundles of axons are situated near the midline of the brainstem and are composed of both ascending and descending fibers that arise from a number of sources and terminate in different areas. [WP,unvetted]." [Wikipedia:Medial_longitudinal_fasciculus] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "fasciculus longitudinalis medialis" RELATED OMO:0003011 [Wikipedia:Medial_longitudinal_fasciculus] @@ -206488,6 +209108,8 @@ property_value: external_definition "The medial longitudinal fasciculus (MLF) is id: UBERON:0002310 name: hippocampus fimbria def: "Regional part of fornix consisting of a prominent white matter structure adjacent to the hippocampus on the ventricular side continuous with the alveus. Near the splenium the fimbria separates from the hippocampus as the crus of the fornix. [adapted from Wikipedia] (MM: 2006-10-26)." [BIRNLEX:1502] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fimbria" BROAD [BIRNLEX:1502] synonym: "fimbria (Vieussens)" RELATED [NeuroNames:187] @@ -206536,6 +209158,8 @@ name: hippocampus pyramidal layer alt_id: UBERON:0005369 def: "A cytoarchitectural term denoting the layer of the hippocampus in which pyramidal cells are predominant. Its location is superficial to the Stratum oriens; it is deep to the Stratum radiatum in area CA1 and area CA2 and deep to the Stratum lucidum in area CA3 (Stephan-75) (NeuroNames)." [BIRNLEX:1444] comment: EDITOR_NOTE this layer changes in its depthwise spatial relation across its extent +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "gyrus occipitalis inferior" RELATED OMO:0003011 [NeuroNames:156] synonym: "gyrus occipitalis tertius" RELATED OMO:0003011 [NeuroNames:156] @@ -206567,6 +209191,8 @@ id: UBERON:0002314 name: midbrain tectum def: "Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM)." [BIRNLEX:1032] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "mesencephalic tectum" EXACT [ZFA:0000445] @@ -206607,6 +209233,8 @@ property_value: taxon_notes "In adult humans it is present only in the mesenceph id: UBERON:0002315 name: gray matter of spinal cord def: "The ridge-shaped grey matter of the spinal cord that extends longitudunally through the center of each half of the spinal cord, and are largely or entirely composed of nerve cell bodies and their dendrites and some supportive tissue." [MP:0008503] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "gray matter of spinal cord" EXACT [OBOL:automatic] synonym: "gray substance of spinal cord" EXACT [FMA:256580] @@ -206636,6 +209264,8 @@ relationship: part_of UBERON:0002240 ! spinal cord id: UBERON:0002316 name: white matter def: "Neural tissue consisting of myelinated axons connecting grey matter areas of the central nervous system." [https://orcid.org/0000-0002-6601-2165, Wikipedia:White_matter] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "CNS tract/commissure" EXACT [ZFA:0001682] @@ -206679,6 +209309,8 @@ property_value: homology_notes "The myelination of axons by glial cells was the id: UBERON:0002317 name: white matter of cerebellum def: "Regional part of cerebellum consisting of the myelinated axons lying deep to the granule cell layer, excluding the deep cerebellar nuclei and the cerebellar peduncles." [BIRNLEX:1562] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "cerebellar tracts/commissures" RELATED OMO:0003004 [ZFA:0001708] @@ -206710,6 +209342,8 @@ property_value: external_ontology_notes "in NIF this is a composite structure; i id: UBERON:0002318 name: white matter of spinal cord def: "The regions of the spinal cord that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008027] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "spinal cord white matter" EXACT [] synonym: "spinal cord white matter of neuraxis" EXACT [OBOL:automatic] @@ -206736,6 +209370,8 @@ id: UBERON:0002319 name: mesangium def: "The inner layer of the glomerulus, within the basement membrane surrounding the glomerular capillaries." [https://sourceforge.net/p/obo/foundational-model-of-anatomy-fma-requests/13/, Wikipedia:Mesangium] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: BTO:0002494 @@ -206764,6 +209400,8 @@ id: UBERON:0002320 name: glomerular mesangium def: "A thin membrane which helps to support the capillary loops in a renal glomerulus. It is connective tissue composed of mesangial cells - myofibroblasts phenotypically related to vascular smooth muscle cells (muscle, smooth, vascular), phagocytes and the mesangial extracellular matrix." [MESH:A05.810.453.736.520.380, Wikipedia:Glomerular_mesangium] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: EMAPA:27961 @@ -206785,6 +209423,8 @@ id: UBERON:0002321 name: extraglomerular mesangium def: "The tissue comprised of mesangial cells that fill the triangular space between the macula densa and the afferent and efferent arterioles of the juxtaglomerular apparatus." [ISBN:0-683-40008-8, MP:0011340] comment: EDITOR_NOTE check MA part_ofs - should be spatially disjoint from renal glomerulus? +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:28278 xref: FMA:84141 @@ -206800,6 +209440,8 @@ relationship: part_of UBERON:0002319 {source="MA"} ! mesangium id: UBERON:0002322 name: periventricular nucleus def: "A thin sheet of small neurons located in the wall of the third ventricle, a composite structure of the hypothalamus." [Wikipedia:Periventricular_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "periventricular nuclei" RELATED OMO:0003004 [ZFA:0000260] @@ -206817,6 +209459,8 @@ name: coelemic cavity lumen alt_id: UBERON:0000169 def: "The cavity within the body of all animals higher than the coelenterates and certain primitive worms, formed by the splitting of the embryonic mesoderm into two layers. In mammals it forms the peritoneal, pleural, and pericardial cavities." [BTO:0001707] comment: EDITOR_NOTE check the FMA placement here; ncit placement of body cavity here probably not correct +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "body cavity" BROAD [BTO:0001707] @@ -206840,13 +209484,11 @@ xref: RETIRED_EHDAA2:0003186 xref: SCTID:361348008 xref: TAO:0001438 xref: UMLS:C0333343 {source="ncithesaurus:Cavity"} -xref: ZFA:0001438 is_a: UBERON:0002553 ! anatomical cavity relationship: develops_from UBERON:0003886 ! future coelemic cavity lumen relationship: luminal_space_of UBERON:0011997 ! coelom relationship: part_of UBERON:0011997 ! coelom relationship: transformation_of UBERON:0003886 {evidence="definitional"} ! future coelemic cavity lumen -property_value: external_definition "Anatomical space, part of the trunk that contains the pericardial and pleuroperitoneal cavities[ZFA]." xsd:string {date_retrieved="2012-09-12", external_class="ZFA:0001438", ontology="ZFA", source="ZFIN:curator"} property_value: external_definition "The cavity within the body of all animals higher than the coelenterates and certain primitive worms, formed by the splitting of the embryonic mesoderm into two layers. In mammals it forms the peritoneal, pleural, and pericardial cavities[BTO]." xsd:string {date_retrieved="2012-09-12", external_class="BTO:0001707", ontology="BTO", source="BTO"} property_value: taxon_notes "In mammals it forms the peritoneal, pleural, and pericardial cavities" xsd:string @@ -206855,6 +209497,8 @@ id: UBERON:0002324 name: muscle of back def: "Any muscle organ that is part of a back [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "back muscle" EXACT [] synonym: "back muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of back" EXACT [OBOL:automatic] @@ -206873,6 +209517,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002325 name: epithelium of urethra def: "The urethra is a renal system organ that carries urine from the bladder to outside the body. The epithelium is the tubular, planar layer of cells through which the urine passes.." [GO:0061071] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of urethra" EXACT [OBOL:automatic] synonym: "urethra epithelial tissue" EXACT [OBOL:automatic] synonym: "urethra epithelium" EXACT [] @@ -206897,6 +209543,8 @@ relationship: part_of UBERON:0000057 ! urethra id: UBERON:0002326 name: lamina propria of urethra def: "A lamina propria that is part of a urethra [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lamina propria mucosa of urethra" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of urethra" EXACT [OBOL:automatic] synonym: "urethra lamina propria" EXACT [] @@ -206916,6 +209564,8 @@ relationship: part_of UBERON:0001008 ! renal system [Term] id: UBERON:0002327 name: trunk of intercostal nerve +subset: human_subset +subset: mouse_subset synonym: "intercostal nerve trunk" EXACT [] synonym: "intercostal neural trunk" EXACT [] xref: EMAPA:37720 {source="MA:th"} @@ -206931,6 +209581,8 @@ id: UBERON:0002328 name: notochord def: "A flexible rod-shaped body found in embryos of all chordates. It is composed of cells derived from the mesoderm and defines the primitive axis of the embryo. In some chordates, it persists throughout life as the main axial support of the body, while in most vertebrates it becomes the nucleus pulposus of the intervertebral disc. The notochord is found ventral to the neural tube." [http://tolweb.org/Chordata/2499, https://github.com/obophenotype/uberon/issues/25, https://github.com/obophenotype/uberon/issues/271, ISBN:0815318960, Wikipedia:Notochord] comment: The notochord appears early in embryogeny and plays an important role in promoting or organizing the embryonic development of nearby structures. In most adult chordates the notochord disappears or becomes highly modified. In some non-vertebrate chordates and fishes the notochord persists as a laterally flexible but incompressible skeletal rod that prevents telescopic collapse of the body during swimming[TOLWEB] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -206989,6 +209641,8 @@ id: UBERON:0002329 name: somite def: "Somites are spheres of epithelial cells that form sequentially along the anterior-posterior axis of the embryo through mesenchymal to epithelial transition of the presomitic mesoderm." [DOI:10.1111/j.1439-0426.2012.01987.x, Wikipedia:Somite] comment: When the somite becomes segmented from the segmental plate, it is composed of an epithelial sac enclosing mesenchymal somitocoel cells. Thereafter the somite differentiates into two parts, the ventro-medial mesenchymal sclerotome and the dorso-lateral epithelial dermomyotome. This change in the epithelial somite depends on surrounding tissue [PMID:15906248] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -207037,6 +209691,8 @@ property_value: homology_notes "(...) cephalocordates and craniates belong to a id: UBERON:0002330 name: exocrine system def: "Anatomical system that consists of the glands and parts of glands that produce exocrine secretions and help to integrate and control bodily metabolic activity. Exocrine glands are glands that secrete their products (hormones) into ducts (duct glands). They are the counterparts to endocrine glands, which secrete their products (hormones) directly into the bloodstream (ductless glands) or release hormones (paracrines) that affect only target cells nearby the release site. [Wikipedia]." [Wikipedia:Exocrine_gland] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "exocrine glandular system" EXACT [EHDAA2:0002225] @@ -207067,6 +209723,8 @@ def: "The connecting cord from the developing embryo to the placenta." [ISBN:0-6 comment: See notes for connecting stalk subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "birth cord" RELATED [Wikipedia:Umbilical_cord] @@ -207107,6 +209765,8 @@ name: pulmonary trunk def: "An arterial trunk which is continuous with the heart and branches into the pulmonary arteries." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "main pulmonary artery" RELATED [Wikipedia:Pulmonary_artery] @@ -207137,6 +209797,8 @@ property_value: homology_notes "As in birds, the conus arteriosus split during e id: UBERON:0002334 name: submandibular duct def: "The duct of the submadibular gland that opens at the sublingual papilla near the frenulum of the tongue." [ISBN:0-683-40008-8, MP:0009525] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ductus submandibularis" RELATED [BTO:0004556] @@ -207167,6 +209829,8 @@ id: UBERON:0002335 name: macula densa def: "The macula densa is an area of specialized cells in the distal tubule that makes contact with the vascular pole of the glomerulus[GO]." [GO:0072024, Wikipedia:Macula_densa] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: BTO:0003940 @@ -207189,6 +209853,8 @@ name: corpus callosum def: "White matter structure containing massive numbers of commissural fibers connecting cortical areas in the two cerebral hemispheres. It is subdivided into a genu, a rostrum, a body, and a splenium. (MM)." [BIRNLEX:1087] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: BAMS:CC @@ -207233,6 +209899,8 @@ id: UBERON:0002337 name: endometrial stroma def: "The layer of connective tissue comprised of the endometrial lining of the uterus which fluctuates in thickness throughout the menstrual cycle." [ncithesaurus:Endometrial_Stroma] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "endometrium stroma" EXACT [] synonym: "stroma of endometrium" EXACT [] xref: CALOHA:TS-1266 @@ -207253,6 +209921,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002338 name: lamina propria of bronchus def: "A lamina propria that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchi lamina propria" EXACT [OBOL:automatic] synonym: "bronchi lamina propria mucosa" EXACT [OBOL:automatic] synonym: "bronchi lamina propria mucosae" EXACT [OBOL:automatic] @@ -207288,6 +209958,8 @@ id: UBERON:0002339 name: epithelium of lobar bronchus def: "The tissue made up of epithelial cells that lines the inside of the lobar bronchus." [GO:0060481] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of lobar bronchus" EXACT [OBOL:automatic] synonym: "epithelial tissue of secondary bronchus" EXACT [OBOL:automatic] synonym: "epithelium of secondary bronchus" EXACT [OBOL:automatic] @@ -207316,6 +209988,8 @@ name: epithelium of main bronchus alt_id: UBERON:0003245 def: "An epithelium that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "bronchus principalis epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchus principalis epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of bronchus principalis" EXACT [OBOL:automatic] @@ -207349,6 +210023,8 @@ id: UBERON:0002341 name: epithelium of segmental bronchus def: "An epithelium that is part of a segmental bronchus [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of segmental bronchus" EXACT [OBOL:automatic] synonym: "epithelial tissue of tertiary bronchus" EXACT [OBOL:automatic] synonym: "epithelium of tertiary bronchus" EXACT [OBOL:automatic] @@ -207381,6 +210057,8 @@ id: UBERON:0002342 name: neural crest def: "A specialized region of ectoderm found between the neural ectoderm (neural plate) and non-neural ectoderm and composed of highly migratory pluripotent cells that delaminate in early embryonic development from the dorsal neural tube and give rise to an astounding variety of differentiated cell types[MP]." [MP:0009846] comment: Gene notes: Many factors and genes, such as Pax3 (Tremblay et al., 1995), slug (Nieto et al., 1994), AP-2 (Zhang et al., 1996; Schorle et al., 1996), and Wnt-1/3a (Ikeya et al., 1997) are expressed in the dorsal most region of the neural tube, and have been shown to be involved in the generation of neural crest cells. +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -207427,6 +210105,8 @@ property_value: homology_notes "We conclude that the neural crest is a vertebrat id: UBERON:0002343 name: abdomen musculature def: "Set of all muscles in abdomen." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "abdominal musculature" EXACT [] @@ -207451,6 +210131,8 @@ name: descending thoracic aorta def: "The part of the aorta that extends from the arch of the aorta to the diaphragm, and from which arises numerous branches that supply oxygenated blood to the chest cage and the organs within the chest." [MP:0009868] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EFO:0002527 xref: EMAPA:18605 @@ -207469,6 +210151,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002346 name: neurectoderm def: "Embryonic ectoderm that gives rise to nervous tissue." [Wikipedia:Neuroectoderm] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "epithelium tubi neuralis; neuroectoderma" RELATED OMO:0003011 [Wikipedia:Neuroectoderm] @@ -207509,6 +210193,8 @@ id: UBERON:0002347 name: thoracic vertebra def: "A thoracic vertebra endochondral element that is composed primarily of a bone tissue." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "dorsal vertebra" EXACT [] @@ -207543,6 +210229,8 @@ name: epicardium def: "A region of the serous membrane that forms the innermost layer of the pericardium and the outer surface of the heart." [http://orcid.org/0000-0002-6601-2165] comment: EDITOR_NOTE TODO - check links with UBERON:0002425 visceral serous pericardium. develops from proepicardium. WP:Epicardium -- When considered as a part of the pericardium, it is the inner layer, or visceral pericardium, continuous with the serous layer. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -207578,6 +210266,8 @@ name: myocardium def: "The middle layer of the heart, comprised mainly of striated cardiac muscle fibers." [ISBN:0-683-40008-8, MP:0005329] comment: EDITOR_NOTE TODO - check 'Myocardum proper' in FMA. We superclass the more generic class for now. FMA has is_a muscle layer - should we add this? ZFA and BTO both have is_a 'cardiac muscle' (tissue?). But in U we also follow FMA and have cardiac muscle tissue of myocardium (there is also Fibrocollagenous connective tissue of myocardium), which would be identical (see issue-10). Note that GO also treats left/right ventricular cardiac muscle tissue synonymous with ventricular myocardium subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -207625,6 +210315,8 @@ id: UBERON:0002350 name: conducting system of heart def: "The cardiac conduction system consists of specialized cardiomyocytes that regulate the frequency of heart beat[GO]." [GO:0003161] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "cardiac conducting system" EXACT [VHOG:0001271] @@ -207665,6 +210357,8 @@ name: sinoatrial node def: "The part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays electrical signals to the AV node[GO]. Subdivision of conducting system of heart at the junction of the right atrium and the superior vena cava, around the sinoatrial nodal branch of right coronary artery and is continuous with the internodal tract[FMA]." [GO:0003163, Wikipedia:Sinoatrial_node] comment: WP:Heart states: "The SA node is found in all amniotes but not in more primitive vertebrates. In these animals, the muscles of the heart are relatively continuous and the sinus venosus coordinates the beat which passes in a wave through the remaining chambers. Indeed, since the sinus venosus is incorporated into the right atrium in amniotes, it is likely homologous with the SA node. In teleosts, with their vestigial sinus venosus, the main centre of coordination is, instead, in the atrium.". Note however that ZFA has SA node. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -207712,6 +210406,8 @@ name: atrioventricular node def: "An area of conducting tissue between the atria and the ventricles of the heart that conducts the normal electrical impulse from the atria to the ventricles." [UBERON:cjm, Wikipedia:Atrioventricular_node] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -207761,6 +210457,8 @@ id: UBERON:0002353 name: bundle of His def: "A part of the His-Purkinje system that transmits signals from the AV node to the cardiac Purkinje fibers[GO]." [GO:0003166, GOC:mtg_heart] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "A-V bundle" RELATED [EMAPA:35152] @@ -207798,6 +210496,8 @@ id: UBERON:0002354 name: cardiac Purkinje fiber alt_id: UBERON:0004147 def: "The cardiac Purkinje fiber is part of the cardiac conduction system that receives signals from the bundle of His and innervates the ventricular cardiac muscle." [GO:0003165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cardiac Purkinje fiber" EXACT [BTO:0001735, GO:0003165] @@ -207828,6 +210528,8 @@ id: UBERON:0002355 name: pelvic region of trunk def: "The lower segment of the trunk, inferioposterior to the abdomen proper, in the transition area between the trunk and the lower limbs." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/720, Wikipedia:Pelvis] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "lesser pelvis" EXACT [FMA:9578] @@ -207860,6 +210562,8 @@ id: UBERON:0002356 name: perineum def: "Subdivision of trunk proper, which is demarcated from the pelvis by the inferior surface of the pelvic diaphragm and from the lower limbs by the perineofemoral lines; together with the thorax, abdomen, and pelvis, it constitutes the trunk[FMA]." [FMA:9579, Wikipedia:Perineum] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "perineal region" EXACT [] @@ -207888,6 +210592,8 @@ property_value: has_relational_adjective "perianal" xsd:string id: UBERON:0002357 name: serous pericardium def: "Serous membrane which is divided into parietal and visceral serous pericardium." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Serous_pericardium] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "pericardium serosum" RELATED OMO:0003011 [Wikipedia:Serous_pericardium] synonym: "serous portion of pericardium" EXACT [FMA:9582] @@ -207907,6 +210613,8 @@ relationship: part_of UBERON:0002406 {source="FMA"} ! pericardial sac id: UBERON:0002358 name: peritoneum def: "A serous membrane that lines the peritoneal cavity[VHOG,modified]." [VHOG:0001257] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -207944,6 +210652,8 @@ property_value: has_relational_adjective "peritoneal" xsd:string id: UBERON:0002359 name: fibrous pericardium def: "Membrane organ which is attached to the pericardial sac proper and the central tendon of diaphragm and is continuous with the pretracheal fascia.[FMA]." [FMA:9586] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: uberon_slim synonym: "fibrous portion of pericardium" EXACT [] @@ -207965,6 +210675,8 @@ id: UBERON:0002360 name: meninx def: "Membrane organ that surrounds the brain and the spinal cord." [FMA:9589, http://www.shsu.edu/~bio_mlt/Chap15.html, Wikipedia:Meninx] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -208006,6 +210718,8 @@ property_value: taxon_notes "Whereas cyclostomes and fishes only have a single e id: UBERON:0002361 name: pia mater def: "The innermost layer of the leptomeninges, consisting of a delicate membrane closely covering the surface of the brain and spinal cord,and lying under the arachnoid membrane. The pia, unlike the arachnoid, extends into the sulci in gyrencephalic animals." [NLXANAT:090209] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "pia" RELATED [NLXANAT:090209] @@ -208048,6 +210762,8 @@ property_value: external_definition "delicate innermost layer of the meninges-th id: UBERON:0002362 name: arachnoid mater def: "A think avascular meningeal layer, between the pia mater and the dural mater. It is separated from the pia mater by the subarachnoid space." [ISBN:0471888893, Wikipedia:Arachnoid_mater] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "arachnoid" EXACT [] @@ -208078,6 +210794,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a0/Gr id: UBERON:0002363 name: dura mater def: "Thick, fibrous meningeal covering surrounding the brain and spinal cord. It is the outermost of the three meningeal coverings. It consists of two layers: the periosteal dura linking the inner surface of the skull and the meningeal dura that lies above the arachnoid dural membrane. The meningeal layer draws away from the periosteal layer and certain locations to form the dural reflections." [NLXANAT:090206] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -208112,6 +210830,8 @@ property_value: function_notes "capable of inducing chondrogenesis - requires co id: UBERON:0002364 name: tympanic membrane def: "A thin membrane that separates the external ear from the middle ear, consisting of two epithelia (one part of the the external accoustic meatus epithelium, the other part of the tympanic cavity epithelium) with a fibrous layer between them. Its function is to transmit sound from the air to the ossicles inside the middle ear. The malleus bone bridges the gap between the eardrum and the other ossicles. Rupture or perforation of the eardrum can lead to conductive hearing loss. [WP,unvetted]." [PMID:11237469, Wikipedia:Tympanic_membrane] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -208154,6 +210874,8 @@ property_value: homology_notes "In particular, a tympanic membrane was not prese id: UBERON:0002365 name: exocrine gland def: "A gland that secretes products (excluding hormones and other chemical messengers) into ducts (duct glands) which lead directly into the external environment[WP]. Typical exocrine glands include sweat glands, salivary glands, mammary glands, stomach, liver, pancreas." [Wikipedia:Exocrine_gland] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -208183,6 +210905,8 @@ property_value: editor_note "Currently this is logically defined by the system i id: UBERON:0002366 name: bulbo-urethral gland def: "Any of the small paired racemose glands below the apex of the prostate in males, located posterolateral to the membranous portion of the urethra at the base of the penis, between the two layers of the fascia of the urogenital diaphragm, in the deep perineal pouch, and enclosed by transverse fibers of the sphincter urethrae membranaceae muscle; homologous to the greater vestibular (Bartholin's) glands in the female[MP]." [MP:anna, Wikipedia:Bulbourethral_gland] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -208225,7 +210949,9 @@ name: prostate gland def: "The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid." [GO:0030850, Wikipedia:Prostate] subset: efo_slim subset: human_reference_atlas +subset: human_subset subset: major_organ +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -208263,6 +210989,8 @@ property_value: has_relational_adjective "prostatic" xsd:string id: UBERON:0002368 name: endocrine gland def: "Endocrine glands are glands of the endocrine system that secrete their products directly into the circulatory system rather than through a duct.[WP, modified]." [Wikipedia:Endocrine_gland] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -208294,6 +211022,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Il id: UBERON:0002369 name: adrenal gland def: "Either of a pair of complex endocrine organs near the anterior medial border of the kidney consisting of a mesodermal cortex that produces glucocorticoid, mineralocorticoid, and androgenic hormones and an ectodermal medulla that produces epinephrine and norepinephrine[BTO]." [BTO:0000047, Wikipedia:Adrenal_gland] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -208348,7 +211078,9 @@ name: thymus def: "Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop." [NLM:thymus, Wikipedia:Thymus] subset: efo_slim subset: human_reference_atlas +subset: human_subset subset: major_organ +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -208406,6 +211138,8 @@ name: bone marrow def: "The soft tissue that fills the cavities of bones." [MGI:cwg, MP:0002397] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "medulla of bone" RELATED [BTO:0000141] @@ -208454,6 +211188,9 @@ id: UBERON:0002372 name: tonsil def: "Either of the two small almond-shaped masses of lymph tissue found on either side of the oropharynx." [MGI:cwg, MP:0002380] subset: efo_slim +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "Mandel" RELATED [BTO:0001387] @@ -208479,6 +211216,7 @@ disjoint_from: UBERON:0005351 ! paraflocculus relationship: contributes_to_morphology_of UBERON:0001735 ! tonsillar ring relationship: located_in UBERON:0000167 ! oral cavity relationship: part_of UBERON:0001735 {source="cjm"} ! tonsillar ring +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: curator_notes "the term 'tonsil' can be ambiguous, sometimes refering specifically to the palatine tonsil, sometimes generically to include the cecal tonsils of avians. This class represents lymphoid tissue that is part of the tonsillar ring, in the mouth/throat region" xsd:string [Term] @@ -208487,6 +211225,8 @@ name: palatine tonsil def: "Tonsils on the left and right sides at the back of the throat. one of the mucosa-associated lymphoid tissues (MALT), located at the entrance to the upper respiratory and gastrointestinal tracts to protect the body from the entry of exogenous material through mucosal sites[WP]." [Wikipedia:Palatine_tonsil] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "faucial tonsil" EXACT [] synonym: "tonsil" BROAD [] @@ -208519,6 +211259,8 @@ id: UBERON:0002374 name: metacarpal bone def: "A bone that is part of the metacarpal skeleton." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Metacarpal_bone] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "metacarpal" EXACT [] @@ -208548,6 +211290,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/2f/M id: UBERON:0002375 name: cricoid cartilage def: "A cartilaginous ring that provides support for the arytenoid cartilages and forms the caudal part of the larynx." [AAO:LAP, FEED:rd, https://github.com/obophenotype/uberon/issues/257] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cartilaginis cricoideae" RELATED OMO:0003004 [Wikipedia:Cricoid_cartilage] @@ -208591,6 +211335,8 @@ def: "Any skeletal muscle that is part of the head region." [http://orcid.org/00 comment: defined generically so could in theory encompass FBbt:00003260 'skeletal muscle of head', or the muscle of a starfish Aristotle's lantern, but we restrict this to craniates. Skeletal muscles of the head originate from the non-segmented head mesoderm (Noden, 1983; Wachtler et al., 1984) subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "adult head muscle organ" NARROW [OBOL:automatic] @@ -208630,6 +211376,8 @@ id: UBERON:0002377 name: muscle of neck def: "Any muscle that is part of the cervical (neck) region." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "muscle organ of neck" EXACT [OBOL:automatic] @@ -208655,6 +211403,8 @@ id: UBERON:0002378 name: muscle of abdomen def: "Muscle (organ) which is a part of the abdomen. Examples: external oblique, rectus abdominis." [Wikipedia:Abdominal_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "abdomen muscle" EXACT [] @@ -208687,6 +211437,8 @@ id: UBERON:0002379 name: perineal muscle def: "Any muscle organ that is part of a perineum [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "muscle of perineum" EXACT [] synonym: "muscle organ of perineal region" EXACT [OBOL:automatic] synonym: "muscle organ of perineum" EXACT [OBOL:automatic] @@ -208709,6 +211461,8 @@ id: UBERON:0002380 name: trapezius muscle def: "A large superficial muscle that extends longitudinally from the occipital bone to the lower thoracic vertebrae and laterally to the spine of the scapula (shoulder blade). Its functions are to move the scapulae and support the arm. The trapezius has three functional regions: the superior region (descending part), which supports the weight of the arm; the intermediate region (transverse part), which retracts the scapulae; and the inferior region (ascending part), which medially rotates and depresses the scapulae. [WP,unvetted]." [Wikipedia:Trapezius_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "musculus trapezius" RELATED OMO:0003011 [Wikipedia:Trapezius_muscle] synonym: "spinotrapezius" RELATED [Wikipedia:Trapezius_muscle] @@ -208740,6 +211494,8 @@ id: UBERON:0002381 name: pectoralis major def: "The pectoralis major is a thick, fan-shaped muscle, situated at the upper front of the chest wall. It makes up the bulk of the chest muscles in the male and lies under the breast in the female. Underneath the pectoralis major is the pectoralis minor, a thin, triangular muscle. [WP,unvetted]." [Wikipedia:Pectoralis_major_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -208771,6 +211527,8 @@ id: UBERON:0002382 name: rectus abdominis muscle def: "The rectus abdominis muscle is a paired muscle running vertically on each side of the anterior wall of the abdomen. There are two parallel sets of muscles, separated by a midline band of connective tissue called the linea alba (white line). It extends from the pubic symphysis/pubic crest inferiorly to the xiphisternum/xiphoid process and lower costal cartilages (5-7) superiorly. It is contained in the Rectus sheath. The rectus is usually crossed by three fibrous bands licked by the tendinous inscriptions. [WP,modified]." [Wikipedia:Rectus_abdominis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -208806,6 +211564,8 @@ id: UBERON:0002383 name: supraspinatus muscle def: "The supraspinatus is a relatively small muscle of the upper limb that takes its name from its origin from the supraspinous fossa superior to the spine of the scapula. It is one of the four rotator cuff muscles and also abducts the arm at the shoulder. The spine of the scapula separates the supraspinatus muscle from the infraspinatus muscle, which originates below the spine. [WP,unvetted]." [Wikipedia:Supraspinatus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "musculus supraspinatus" EXACT OMO:0003011 [Wikipedia:Supraspinatus_muscle] @@ -208834,6 +211594,8 @@ id: UBERON:0002384 name: connective tissue def: "Tissue with cells that deposit non-polarized extracellular matrix including connective tissue fibers and ground substance." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/23, PSPUB:0000170, VSAO:0000017] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -208875,6 +211637,8 @@ id: UBERON:0002385 name: muscle tissue def: "Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]." [GO:0060537, https://sourceforge.net/tracker/index.php?func=detail&aid=2801266&group_id=36855&atid=440764, Wikipedia:Muscle_tissue] comment: Vertebrate muscle is categorized into three major muscle types defined by their structural and functional properties: skeletal, cardiac and smooth. In Dmel the counterparts are somatic, heart/cardiac and visceral. Here we take a cell type based approach. +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "muscular tissue" EXACT SENSU [] synonym: "portion of muscle tissue" EXACT [FMA:9641] @@ -208910,6 +211674,8 @@ id: UBERON:0002386 name: forelimb zeugopod def: "The middle limb segment of the pectoral free limb, between the autopod and stylopod segments. Includes as parts the forelimb zeugopodial skeleton, which includes as parts the radius and ulna, or their cartilage precursors, or evolutionary variants." [PHENOSCAPE:curators] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "antebrachial region" EXACT [] @@ -208974,6 +211740,8 @@ id: UBERON:0002387 name: pes def: "Distal portion of the hind limb, including tarsal region, metatarsal region and digits." [Wikipedia:Foot, Wikipedia:Pes_(anatomy)] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "foot" EXACT HUMAN_PREFERRED [MA:0000044] @@ -209020,6 +211788,8 @@ id: UBERON:0002389 name: manual digit alt_id: UBERON:0000028 def: "A digit that is part of a manus (hand)." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "digit of hand" EXACT [FMA:9666] @@ -209060,6 +211830,8 @@ name: hematopoietic system def: "Anatomical system that is involved in the production of hematopoietic cells." [Wikipedia:Haematopoiesis] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -209112,6 +211884,8 @@ id: UBERON:0002391 name: lymph def: "Lymph is the fluid that is formed when interstitial fluid enters the conduits of the lymphatic system through lymph capillaries[WP]." [Wikipedia:Lymph] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "lympha" RELATED OMO:0003011 [Wikipedia:Lymph] @@ -209142,6 +211916,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/19/Il id: UBERON:0002392 name: nasolacrimal duct def: "The paired channels leading from the lacrimal sacs to the inferior meatus of the nose, through which tears are conducted through the nasal cavity." [ISBN:0-683-40008-8, MP:0008969] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "d. nasolacrimalis" RELATED OMO:0003011 [Wikipedia:Nasolacrimal_duct] @@ -209182,6 +211958,8 @@ id: UBERON:0002393 name: pharyngotympanic tube def: "Organ with organ cavity which connects the cavity of the middle ear to the cavity of the pharynx. Examples: There are only two pharyngotympanic tubes, the right and the left pharyngotympanic tubes.[FMA]." [FMA:FMA, Wikipedia:Eustachian_tube] comment: EDITOR_NOTE we follow FMA in making this an organ, but include a separate class for the part that is epithelium, which is equivalent to the EHDAA2 structure. From this we infer the developmental relationship +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -209220,6 +211998,8 @@ property_value: homology_notes "The tympanic cavity and auditory tube of an amni id: UBERON:0002394 name: bile duct def: "Any of the ducts that form the biliary tree, carrying bile from the liver to the small intestine." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Bile_duct] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "bile tube" RELATED [] @@ -209264,6 +212044,8 @@ id: UBERON:0002395 name: talus def: "A proximal tarsal bone resulting from fusion of intermedium and fibulare." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Talus_bone] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "astragaloid bone" RELATED [BTO:0002354] @@ -209285,11 +212067,11 @@ xref: UMLS:C0039277 {source="ncithesaurus:Talus"} xref: Wikipedia:Talus_bone is_a: UBERON:0011679 ! proximal tarsal bone intersection_of: UBERON:0011679 ! proximal tarsal bone -intersection_of: derived_from_ancestral_fusion_of UBERON:0011678 ! hindlimb intermedium bone -intersection_of: derived_from_ancestral_fusion_of UBERON:0012126 ! fibulare +intersection_of: has_fused_element UBERON:0011678 ! hindlimb intermedium bone +intersection_of: has_fused_element UBERON:0012126 ! fibulare relationship: connected_to UBERON:0000979 ! tibia -relationship: derived_from_ancestral_fusion_of UBERON:0011678 ! hindlimb intermedium bone -relationship: derived_from_ancestral_fusion_of UBERON:0012126 ! fibulare +relationship: has_fused_element UBERON:0011678 ! hindlimb intermedium bone +relationship: has_fused_element UBERON:0012126 ! fibulare relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/a/a9/Subtalar_Joint.PNG" xsd:anyURI property_value: taxon_notes "The talus is apparently derived from the fusion of three separate bones in the feet of primitive amphibians; the tibiale, articulating with tibia, the intermedium, between the bases of the tibia and fibula, and the fourth centrale, lying in the mid-part of the tarsus. These bones are still partially separate in modern amphibians, which therefore do not have a true talus. The talus forms a considerably more flexible joint in mammals than it does in reptiles. This reaches its greatest extent in artiodactyls, where the distal surface of the bone has a smooth keel to allow greater freedom of movement of the foot, and thus increase running speed" xsd:string {source="WP"} @@ -209299,6 +212081,8 @@ id: UBERON:0002396 name: vomer def: "The triangular flat bone of the nasal septum." [ISBN:0-683-40008-8, MP:0000098] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -209338,6 +212122,8 @@ name: maxilla def: "The bone which normally forms the lateral upper jaw in osteichthyans, including tetrapods." [http://palaeos.com/vertebrates/glossary/glossaryM.html, Wikipedia:Maxilla] comment: Fusion of maxilla + premaxilla subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -209387,6 +212173,8 @@ property_value: has_relational_adjective "maxillary" xsd:string id: UBERON:0002398 name: manus def: "Distal segment of the fore limb, including carpal region, metacarpal region and digits." [Wikipedia:Hand, Wikipedia:Manus_(anatomy)] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "fore foot" NARROW INCONSISTENT [] @@ -209433,6 +212221,8 @@ id: UBERON:0002399 name: lesser omentum def: "The double layer of peritoneum that extends from the liver to the lesser curvature of the stomach and the start of the duodenum. [WP,unvetted]." [Wikipedia:Lesser_omentum] comment: EDITOR_NOTE exact part of and develops from relationships need to be established +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "gastrohepatic omentum" RELATED [Wikipedia:Lesser_omentum] synonym: "omentum minus" RELATED OMO:0003011 [Wikipedia:Lesser_omentum] @@ -209461,6 +212251,8 @@ id: UBERON:0002400 name: parietal pleura def: "The outer serous membrane of the pulmonary pleural." [UBERON:cjm, Wikipedia:Pulmonary_pleurae] comment: the part of the pleura external to the visceral pleura. It lines the inner surface of the chest wall, covers the diaphragm, and is reflected over the structures occupying the middle of the thorax +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "pleura parietalis" RELATED OMO:0003011 [Wikipedia:Parietal_pleura] @@ -209487,6 +212279,8 @@ id: UBERON:0002401 name: visceral pleura def: "The inner serous membrane of the pulmonary pleural. The visceral pleura lines the lungs." [UBERON:cjm, Wikipedia:Pulmonary_pleurae] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "lung mesothelium" RELATED [EHDAA2:0002205] @@ -209523,6 +212317,8 @@ property_value: external_ontology_notes "FMA treats this as part of the lungs" x id: UBERON:0002402 name: pleural cavity def: "The fluid-filled cavity that lies between the visceral and parietal pleurae." [https://github.com/obophenotype/uberon/issues/86, Wikipedia:Pleural_cavity] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cavitas pleuralis" EXACT OMO:0003011 [Wikipedia:Pleural_cavity] @@ -209559,6 +212355,8 @@ id: UBERON:0002403 name: internal intercostal muscle def: "An intercostal muscle that aids in forced expiration (quiet expiration is a passive process)." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Intercostal_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "intercostal muscle internal layer" RELATED [] synonym: "intercostales internus" EXACT [] @@ -209582,6 +212380,8 @@ property_value: structure_notes "The internal intercostals are responsible for t id: UBERON:0002404 name: transversus thoracis def: "The tranversus thoracis lies internal to the thoracic cage, anteriorly. It is a thin plane of muscular and tendinous fibers, situated upon the inner surface of the front wall of the chest. It is in the same layer as the subcostal muscles. It arises on either side from the lower third of the posterior surface of the body of the sternum, from the posterior surface of the xiphoid process, and from the sternal ends of the costal cartilages of the lower three or four true ribs. Its fibers diverge upward and lateralward, to be inserted by slips into the lower borders and inner surfaces of the costal cartilages of the second, third, fourth, fifth, and sixth ribs. The lowest fibers of this muscle are horizontal in their direction, and are continuous with those of the Transversus abdominis; the intermediate fibers are oblique, while the highest are almost vertical. This muscle varies in its attachments, not only in different subjects, but on opposite sides of the same subject. [WP,unvetted]." [Wikipedia:Transversus_thoracis] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: uberon_slim xref: EMAPA:19267 @@ -209600,6 +212400,8 @@ id: UBERON:0002405 name: immune system def: "Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies." [Wikipedia:Immune_system] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -209633,6 +212435,8 @@ property_value: homology_notes "The antibody-based immune system defined by the id: UBERON:0002406 name: pericardial sac def: "A double-walled sac containing the heart and the roots of the great vessels." [https://github.com/obophenotype/uberon/issues/86, Wikipedia:Pericardium] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "pericardium" RELATED [] @@ -209657,6 +212461,8 @@ name: pericardium def: "The combination of pericardial sac (a double-walled sac containing the heart and the roots of the great vessels) plus fibrous pericardium." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Pericardium] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -209699,6 +212505,8 @@ property_value: has_relational_adjective "pericardial" xsd:string id: UBERON:0002408 name: parietal serous pericardium def: "Parietal serous membrane which is part of the pericardium and forms the outer layer of the pericardial sac." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "lamina parietalis (pericardii serosum)" EXACT [] @@ -209727,6 +212535,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7e/Gr id: UBERON:0002409 name: pericardial fluid def: "Transudate contained in the pericardial cavity.[FMA]." [FMA:9887, Wikipedia:Pericardial_fluid] +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: BTO:0001016 xref: FMA:9887 @@ -209744,6 +212554,8 @@ relationship: produced_by UBERON:0002425 ! visceral serous pericardium id: UBERON:0002410 name: autonomic nervous system def: "The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands[GO]." [GO:0048483] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -209791,6 +212603,8 @@ property_value: homology_notes "From comparative analyses of craniate brains, a id: UBERON:0002411 name: clitoris def: "The small, erectile body located at the anterior end of the vulva." [ISBN:0-683-40008-8, MP:0003127] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -209823,6 +212637,8 @@ id: UBERON:0002412 name: vertebra def: "The ossified form of a vertebral element, a skeletal element that forms around the notochord and is part of the vertebral column." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, http://orcid.org/0000-0002-6601-2165, VSAO:0000184] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -209862,6 +212678,8 @@ id: UBERON:0002413 name: cervical vertebra def: "A vertebra that is located in the cervical region of the vertebral column." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cervical vertebrae" EXACT OMO:0003004 [] @@ -209894,6 +212712,8 @@ id: UBERON:0002414 name: lumbar vertebra def: "Large vertebra of the movable part of the vertebral column, characterized by the absence of the foramen transversarium within the transverse process, and by the absence of facets on the sides of the body." [Wikipedia:Lumbar_vertebrae] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: CALOHA:TS-2364 @@ -209925,6 +212745,7 @@ name: tail def: "An external caudal extension of the body. In chordates, the tail is post-anal, in other animals the anus ends in the tail." [AEO:0000109, Wikipedia:Tail] subset: efo_slim subset: grouping_class +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "caudal subdivision" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -209953,6 +212774,8 @@ def: "Connected anatomical system that forms a barrier between an animal and its subset: efo_slim subset: grouping_class subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "body surface" RELATED [] synonym: "dermal system" RELATED [MIAA:0000033] @@ -210003,6 +212826,8 @@ property_value: homology_notes "(...) the integument of many tetrapods is reinfo id: UBERON:0002417 name: abdominal segment of trunk def: "The abdominal segment of the torso." [Wikipedia:Lumbar] +subset: human_subset +subset: mouse_subset synonym: "abdomen/pelvis/perineum" RELATED [MA:0000021] synonym: "lower body" RELATED [MA:0000021] synonym: "lower trunk" RELATED [FMA:259211] @@ -210021,6 +212846,8 @@ name: cartilage tissue def: "Skeletal tissue that is avascular, rich in glycosaminoglycans (GAGs) and typically includes chondrocytes within isolated lacunae. Cartilage tissue is deposited by chondroblasts." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/37, https://sourceforge.net/p/obo/vertebrate-skeletal-anatomy-vsao-term-requests/5, PSPUB:0000170, VSAO:0000040] comment: Previous: "A portion of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate[GO]. Regular connective tissue, which consists of chondrocytes and related cells, the intercellular matrix of which is chondrified. Examples: hyaline cartilage, fibrocartilage, elastic cartilage[FMA]. an avascular supporting and articular skeletal tissue. It also functions as the primary endoskeletal support in vertebrate embryos. Cartilage is deposited by and is composed of chondroblasts and chondrocytes separated by an extracellular matrix, which may or may not mineralize depending on cartilage type, age, or taxon[Hall and Witten]." See also FMA:71500 Set of cartilages, FMA:55107 Cartilage organ, FMA:12264 Articular cartilage. // elements made from cartilage, cartilage-like, or chondroid tissues evolved in invertebrates[H&W] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -210074,6 +212901,8 @@ property_value: homology_notes "Phylogenetic analysis suggests that cartilage ar id: UBERON:0002419 name: skin gland def: "A gland that is part of a skin of body [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "glandulae cutis" EXACT OMO:0003011 [FMA:71878, FMA:TA] synonym: "set of skin glands" RELATED [FMA:71878] @@ -210096,6 +212925,8 @@ id: UBERON:0002420 name: basal ganglion def: "An individual member of a collection of basal ganglia. Basal ganglia are subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum[NIF,modified]." [BIRNLEX:826] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "basal ganglia" RELATED OMO:0003004 [] @@ -210119,6 +212950,8 @@ id: UBERON:0002421 name: hippocampal formation def: "Hippocampus (proper) plus dentate gyrus and subiculum[definition derived from NIF comments and ontology alignment]." [https://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "archipallium" RELATED [MA:0000189] @@ -210161,6 +212994,8 @@ id: UBERON:0002422 name: fourth ventricle def: "Part of the ventricular system of the brain, forming a single large irregularly shaped cavity located on the midline of the rhombencephalon, between the medulla, pons and the isthmus ventrally and the cerebellum dorsally. It is continuous with the cerebral aqueduct anteriorally and the central canal of the spinal cord posteriorly. It communicates with the subarachnoid space through its lateral and median apertures." [BIRNLEX:1256] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -210223,6 +213058,8 @@ id: UBERON:0002423 name: hepatobiliary system def: "The part of the digestive system that contains the liver and the biliary system." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -210262,6 +213099,8 @@ property_value: function_notes "The hepaticobiliary system is responsible for me id: UBERON:0002424 name: oral epithelium def: "An epithelium that is part of the mouth and lines the oral cavity, typically stratified squamous, and may be para-, ortho- or non- keratinized. Primary barrier between oral environment and deeper tissues." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "epithelium of mucosa of mouth" EXACT [FMA:265152] synonym: "epithelium of oral mucosa" EXACT [FMA:265152] @@ -210295,6 +213134,8 @@ property_value: external_definition "The epithelium that lines the oral cavity. id: UBERON:0002425 name: visceral serous pericardium def: "Visceral serous membrane which is continuous with the parietal serous pericardium and is attached to the myocardium[FMA]." [Wikipedia:Visceral_pericardium] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "epicardium" RELATED [MA:0000484] @@ -210323,6 +213164,8 @@ id: UBERON:0002426 name: chest muscle def: "Any muscle organ that is part of a chest [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "anterior thoracic region muscle organ" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax muscle organ" EXACT [OBOL:automatic] synonym: "chest muscle organ" EXACT [OBOL:automatic] @@ -210350,6 +213193,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002427 name: arm skin def: "A zone of skin that is part of an arm [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "brachial region skin" RELATED [OBOL:automatic] synonym: "skin of arm" EXACT [OBOL:automatic] xref: EMAPA:37350 {source="MA:th"} @@ -210366,6 +213211,8 @@ id: UBERON:0002428 name: limb bone def: "A bone that is part of a limb [Automatically generated definition]." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bone of extremity" EXACT [] synonym: "bone of limb" EXACT [OBOL:automatic] @@ -210391,6 +213238,8 @@ property_value: external_ontology_notes "NCITA includes clavicle. MA:'limb bone' id: UBERON:0002429 name: cervical lymph node def: "Cervical lymph nodes are lymph nodes found in the neck. [WP,unvetted]." [Wikipedia:Cervical_lymph_node] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "lymph node of neck" EXACT [] @@ -210410,6 +213259,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4c/Ly id: UBERON:0002430 name: lateral hypothalamic area def: "The lateral hypothalamus or lateral hypothalamic area is a part of the hypothalamus. It is concerned with hunger. Damage to this area can cause reduced food intake. Stimulating the lateral hypothalamus causes a desire to eat, while stimulating the ventromedial hypothalamus causes a desire to stop eating. [WP,unvetted]." [Wikipedia:Lateral_hypothalamic_area] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "area hypothalamica lateralis" EXACT OMO:0003011 [FMA:62030, FMA:TA] synonym: "area lateralis hypothalami" RELATED OMO:0003011 [NeuroNames:426] @@ -210457,6 +213308,8 @@ consider: UBERON:0006964 id: UBERON:0002432 name: pars intermedia of adenohypophysis def: "The thin boundary between the adenohypophysis and neurohypophysis of the pituitary that produces melanocyte stimulating hormone (MSH); this area is small or absent in mammalian adults." [MGI:csmith, MP:0008130] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -210499,6 +213352,8 @@ property_value: homology_notes "It (the hypophysis) develops embryonically in al id: UBERON:0002433 name: pars tuberalis of adenohypophysis def: "The pars tuberalis is part of the anterior lobe of the pituitary gland, and wraps the pituitary stalk in a highly vascularized sheath. [WP,unvetted]." [Wikipedia:Pars_tuberalis] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "pars infundibularis of adenohypophysis" EXACT [FMA:74631] @@ -210530,6 +213385,8 @@ name: pituitary stalk alt_id: UBERON:0003014 alt_id: UBERON:0014606 def: "The apical portion of the tubular structure extending from the hypothalamus to the posterior lobe of the pituitary gland." [ISBN:0-683-40008-8, MP:0009463] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -210599,6 +213456,8 @@ property_value: homology_notes "It (the hypophysis) develops embryonically in al id: UBERON:0002435 name: striatum def: "A region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.[GO]." [GOC:jl, Wikipedia:Striatum] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "caudate putamen" RELATED [BIRNLEX:1672] @@ -210649,6 +213508,8 @@ id: UBERON:0002436 name: primary visual cortex def: "The visual area of the brain that is specialized for processing information about static and moving objects. The primary visual cortex, which is defined by its function or stage in the visual system, is approximately equivalent to the striate cortex, also known as Brodmann area 17, which is defined by its anatomical location." [WikipediaVersioned:Visual_cortex&oldid=1069729211] comment: In some species, parcellations of lobes are not well defined if at all. The primary visual cortex being part of the occiptal lobe hence could refer to it being part of the most posterior region of the mammalian cerebral cortex. +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "area striata" RELATED [] @@ -210687,6 +213548,8 @@ relationship: part_of UBERON:0002021 ! occipital lobe id: UBERON:0002437 name: cerebral hemisphere white matter def: "White matter that is part of a cerebral hemisphere." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebral hemisphere white matter" EXACT [] synonym: "cerebral white matter" EXACT [MA:0000945] @@ -210719,6 +213582,8 @@ property_value: external_ontology_notes "The BTO class is inconsistent as it is id: UBERON:0002438 name: ventral tegmental nucleus def: "A nucleus of brain that is part of a ventral tegmental area." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "anterior tegmental nuclei" RELATED INCONSISTENT [FMA:72435] synonym: "anterior tegmental nucleus" RELATED INCONSISTENT [FMA:72435, http://www.medilexicon.com/medicaldictionary.php?t=61761] @@ -210775,6 +213640,8 @@ id: UBERON:0002439 name: myenteric nerve plexus def: "One of two ganglionated neural networks which together form the enteric nervous system. The myenteric (Auerbach's) plexus is located between the longitudinal and circular muscle layers of the gut. Its neurons project to the circular muscle, to other myenteric ganglia, to submucosal ganglia, or directly to the epithelium, and play an important role in regulating and patterning gut motility." [NLXANAT:100306] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "Auberbach plexus" EXACT [NLXANAT:100306] @@ -210812,6 +213679,8 @@ property_value: external_ontology_notes "note that FMA uses Meissner's plexus as id: UBERON:0002440 name: inferior cervical ganglion def: "The inferior cervical ganglion is situated between the base of the transverse process of the last cervical vertebra and the neck of the first rib, on the medial side of the costocervical artery. Its form is irregular; it is larger in size than the middle cervical ganglion, and is frequently fused with the first thoracic ganglion. [WP,unvetted]." [Wikipedia:Inferior_cervical_ganglion] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "cervico-thoracic" RELATED [EMAPA:18439] synonym: "cervico-thoracic ganglion" RELATED [EMAPA:18439] @@ -210838,6 +213707,8 @@ id: UBERON:0002441 name: cervicothoracic ganglion def: "The group of neurons formed by the fusion of the inferior cervical and first thoracic ganglia." [ISBN:0-683-40008-8, MESH:A08.340.315.350.800, MP:0001017] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cervicothoracic sympathetic ganglion" EXACT [] @@ -210860,6 +213731,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7a/Gr [Term] id: UBERON:0002442 name: axillary nerve trunk +subset: human_subset +subset: mouse_subset synonym: "circumflex nerve trunk" RELATED [MA:0001175] synonym: "right axillary neural trunk" EXACT [] synonym: "trunk of right axillary nerve" EXACT [FMA:65265] @@ -210876,6 +213749,8 @@ id: UBERON:0002443 name: choroidal blood vessel def: "A blood vessel that is part of a choroid [Automatically generated definition]." [OBOL:automatic] comment: cannot find singular in FMA, using Set class +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "blood vessel of choroid" EXACT [OBOL:automatic] synonym: "blood vessel of choroid coat" EXACT [OBOL:automatic] @@ -210903,6 +213778,8 @@ id: UBERON:0002444 name: lens fiber def: "A region of the lens consisting of packed elongated enucleate cells packed with crystallin." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fibrae lentis" EXACT OMO:0003011 [FMA:76827, FMA:TA] synonym: "lens fibers" EXACT [] @@ -210939,6 +213816,8 @@ id: UBERON:0002445 name: ulnare def: "The postaxial bone of the proximal carpal region. Found in close approximation to the ulna, often in articulation[PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/114, PHENOSCAPE:ad] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "cuneiform bone of hand" EXACT [] synonym: "cuneiform bone of manus" EXACT [] @@ -210982,6 +213861,8 @@ name: patella def: "A large sesamoid bone found in the distal femur/proximal tibial region of the hindlimb of tetrapods. The patella is the attachment site for proximal hindlimb tendons.[PHENOSCAPE:ad]." [https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=3470151&group_id=76834, PHENOSCAPE:ad] comment: The patella, also known as the knee cap or kneepan, is the largest sesamoid bone in the human body. The primary functional role of the patella is knee extension. The patella has convergently evolved in placental mammals and birds; marsupials have only rudimentary, non-ossified patellae. In more primitive tetrapods, including living amphibians and reptiles, the muscle tendons from the upper leg are attached directly to the tibia, and the patella is not present. See also: fabella. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "knee bone" RELATED [FMA:24485] @@ -211015,6 +213896,8 @@ property_value: has_relational_adjective "patellar" xsd:string id: UBERON:0002447 name: palatine gland def: "The palatine glands form a continuous layer on its posterior surface and around the uvula. They are primarily mucous secreting glands, as opposed to serous or mixed secreting glands. [WP,unvetted]." [Wikipedia:Palatine_glands] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "palatine glands set" EXACT [] @@ -211037,6 +213920,8 @@ relationship: part_of UBERON:0007375 ! roof of mouth id: UBERON:0002448 name: fungiform papilla def: "Any of the mushroom-shaped papillae, which have a single taste bud at the tip, located mostly on the dorsal anterior portion of the tongue." [MGI:smb, MP:0006257] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "fungiform papilla of tongue" EXACT [FMA:54821] @@ -211064,6 +213949,8 @@ property_value: taxon_notes "In the mouse, Fungiform and palatal taste buds are id: UBERON:0002450 name: decidua def: "The maternal uterine-derived portion of the placenta." [MP:0004256, PMID:11433360] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "decidous membrane" EXACT [FMA:85538] @@ -211102,6 +213989,8 @@ id: UBERON:0002451 name: endometrial gland def: "The mucous secreting gland associated with the mucuous membrane lining the uterus." [Wikipedia:Uterine_glands] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -211135,6 +214024,8 @@ property_value: structure_notes "simple or branched tubular" xsd:string id: UBERON:0002453 name: ethmoid sinus def: "The evaginations of the mucous membrane of the nasal cavity into the ethmoidal bony labyrinth, forming multiple small paranasal sinuses." [ISBN:0-683-40008-8, MP:0002245] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cellulae ethmoidales" RELATED OMO:0003011 [Wikipedia:Ethmoid_sinus] @@ -211156,6 +214047,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/f/fb/N id: UBERON:0002454 name: dorsal metacarpal artery def: "Aanastomosis of dorsal carpal branch of the radial artery and the dorsal carpal branch of the ulnar artery near the back of the wrist. It is made up of the dorsal carpal branches of both the ulnar and radial arteries. It also anastomoses with the anterior interosseous artery and the posterior interosseous artery. The arch gives off three dorsal metacarpal arteries." [Wikipedia:Dorsal_metacarpal_artery] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteriae metacarpales dorsales" EXACT OMO:0003011 [FMA:70800, FMA:TA] synonym: "dorsal metacarpal arteries" EXACT [] @@ -211176,6 +214069,8 @@ property_value: editor_note "check FMA, singular. specific subtypes e.g. FMA:227 id: UBERON:0002455 name: common plantar digital arteries subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteriae digitales plantares communes" EXACT OMO:0003011 [FMA:70821, FMA:TA] synonym: "arteriae digitales plantares communes" RELATED OMO:0003011 [Wikipedia:Common_plantar_digital_arteries] synonym: "common plantar digital arteries" EXACT [] @@ -211195,6 +214090,8 @@ id: UBERON:0002456 name: internal thoracic artery def: "An artery that supplies the anterior chest wall and the breasts. It is a paired artery, with one running along each side of the sternum, to continue after its bifurcation as the superior epigastric and musculophrenic arteries. [WP,unvetted]." [Wikipedia:Internal_thoracic_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arteria mammaria interna" RELATED OMO:0003011 [Wikipedia:Internal_thoracic_artery] synonym: "arteria thoracica interna" RELATED OMO:0003011 [Wikipedia:Internal_thoracic_artery] @@ -211224,6 +214121,8 @@ id: UBERON:0002457 name: intersomitic artery alt_id: UBERON:0006001 def: "The small branching sprouts of the dorsal aorta that grow across the medial surface of the somite, turn right angles to grow over that surface and then fuse with other sprouts and form the vertebral arteries adjacent to the neural tube; the intersomitic arteries supply the body wall and persist in the adult as the posterior intercostal, subcostal and the lumbar arteries." [MP:0010662] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "intersegmental arteries" RELATED OMO:0003004 [ZFA:0001061] @@ -211246,6 +214145,8 @@ property_value: homology_notes "Few changes of evolutionary significance occur i id: UBERON:0002458 name: spinal artery def: "Arteries that supply the spinal cord." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Spinal_artery] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "spinal arteries" EXACT OMO:0003004 [ZFA:0000682] @@ -211270,6 +214171,8 @@ id: UBERON:0002459 name: inferior palpebral vein def: "A blood vessel that drains from from an lower eyelid." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "inferior palpebral veins" EXACT [] synonym: "inferior palpebral veins set" EXACT [] synonym: "lower palpebral vein" RELATED [MA:0002147] @@ -211293,6 +214196,8 @@ id: UBERON:0002460 name: vesical vein def: "A tributary of the iliac vein that drains the urinary bladder." [UBERON:cjm, Wikipedia:Vesical_veins] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "venae vesicales" EXACT OMO:0003011 [FMA:70911, FMA:TA] synonym: "vesical veins" EXACT OMO:0003004 [] @@ -211316,6 +214221,8 @@ id: UBERON:0002461 name: anterior abdominal wall muscle def: "Any skeletal muscle organ that is part of a anterior abdominal wall. Examples: the obliques, pyramidalis and transversus abdominus." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "muscle of anterior abdominal wall" EXACT [FMA:20278] synonym: "ventral abdominal wall muscle" EXACT [UBERON:cjm] xref: EHDAA2:0000125 @@ -211335,6 +214242,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002462 name: erector spinae muscle group def: "A bundle of muscles and tendons that is paired and runs more or less vertically. It extends throughout the lumbar, thoracic and cervical regions, and lies in the groove to the side of the vertebral column." [Wikipedia:Erector_spinae_muscles] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "erector spinae" EXACT [MA:0002289] synonym: "erector spinalis" RELATED [BTO:0001652] @@ -211370,6 +214279,8 @@ id: UBERON:0002463 name: muscle of posterior compartment of hindlimb stylopod alt_id: UBERON:0008538 def: "Any of the posterior thigh muscles. [WP,modified]." [Wikipedia:Hamstring] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "hamstring" RELATED [VHOG:0000844] synonym: "hamstring muscle" EXACT [MA:0002312] @@ -211405,6 +214316,8 @@ property_value: editor_note "check FMA, singular." xsd:string id: UBERON:0002464 name: nerve trunk alt_id: UBERON:0001147 +subset: human_subset +subset: mouse_subset synonym: "peripheral nerve trunk" EXACT [EMAPA:16986] synonym: "trunk of nerve" EXACT [] synonym: "trunk of peripheral nerve" EXACT [] @@ -211429,6 +214342,9 @@ id: UBERON:0002465 name: lymphoid system alt_id: UBERON:0002096 def: "The lymphatic system in vertebrates is a network of conduits that carry a clear fluid called lymph. It also includes the lymphoid tissue through which the lymph travels. Lymphoid tissue is found in many organs, particularly the lymph nodes, and in the lymphoid follicles associated with the digestive system such as the tonsils. The system also includes all the structures dedicated to the circulation and production of lymphocytes, which includes the spleen, thymus, bone marrow and the lymphoid tissue associated with the digestive system[WP]." [Wikipedia:Lymphoid_system] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "lymphatic circulatory system" RELATED [https://orcid.org/0000-0002-6601-2165] @@ -211455,6 +214371,7 @@ is_a: UBERON:0000467 ! anatomical system relationship: in_taxon NCBITaxon:7711 ! Chordata relationship: part_of UBERON:0002193 {source="FMA"} ! hemolymphoid system relationship: part_of UBERON:0002405 ! immune system +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/TE-Lymphatic_system_diagram.svg" xsd:anyURI property_value: external_definition "Part of the circulatory system which consists of a series of vessels which collect blood (exclusive of erythrocytes) which seep through capillary walls and return it to the veins.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010522", ontology="AAO", source="AAO:BJB"} property_value: external_ontology_notes "We follow FMA and MA in distinguishing between lymphatic system and lymphoid system, with lymhoid tissue part of the non-lymphatic component, although these terms are often used interchangeably. We assume the ZFA term lymphatic tissue actually corresponds to the broader class (e.g. ZFA lymph node in the ZFA lymphatic system). See tracker for more comments." xsd:string {source="https://github.com/obophenotype/mouse-anatomy-ontology/issues/51"} @@ -211467,6 +214384,8 @@ property_value: taxon_notes "The lymphatic systems of reptiles and some birds ha id: UBERON:0002466 name: intestine secretion def: "Clear to pale yellow watery secretions from the glands lining the small intestine walls. Secretion is stimulated by the mechanical pressure of partly digested food in the intestine." [Wikipedia:Succus_entericus] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "intestinal juice" RELATED [BTO:0000644] @@ -211489,6 +214408,8 @@ relationship: produced_by UBERON:0000160 ! intestine id: UBERON:0002467 name: filiform papilla def: "The filiform papillae are thin, long 'V'-shaped cones that don't contain taste buds but are the most numerous. These papillae are mechanical and not involved in gustation covering most of the dorsum (upper surface). They are small and arranged in lines parallel to the V-shaped row of circumvallate papillae, except at the tip of the tongue where they are aligned transversely. Projecting from their apices are numerous filamentous processes, or secondary papillae. These are of a whitish tint, owing to the thickness and density of the epithelium of which they are composed. This epithelium has undergone a peculiar modification as the cells have become cornified and elongated into dense, imbricated, brush-like processes. They contain also a number of elastic fibers, which render them firmer and more elastic than the papillae of mucous membrane generally. The larger and longer papillae of this group are sometimes termed papillae conicae. Fungiform papillae are found dispersed throughout the filiform papillae. [WP,unvetted]." [Wikipedia:Filiform_papilla] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "filiform papilla of tongue" EXACT [FMA:54820] @@ -211512,6 +214433,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/31/Gr id: UBERON:0002468 name: foliate papilla def: "Any of the papillae located on the sides of the tongue." [ISBN:0-8036-0655-9, MGI:smb, MP:0006259] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "foliate papilla of tongue" EXACT [FMA:54823] @@ -211537,6 +214460,8 @@ id: UBERON:0002469 name: esophagus mucosa alt_id: UBERON:0003345 def: "A mucosa that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "esophageal mucosa" EXACT [] synonym: "esophageal mucous membrane" EXACT [] synonym: "esophagus mucosa" EXACT [FMA:62996] @@ -211573,6 +214498,8 @@ id: UBERON:0002470 name: autopod region def: "Terminal segment of free limb, immediately distal to the zeugopod region. The fully developed autopod consists of the autopod skeleton plus associated structures such as integument, muscle tissue, vasculature etc. The autopod is divided into mesopodial, metapodiual, and acropodial segments. Examples: human hand, mouse paw, human foot." [https://github.com/obophenotype/uberon/issues/303, https://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "autopod" BROAD [MA:0002714] @@ -211613,6 +214540,8 @@ name: zeugopod def: "The middle free limb segment, between the autopod and stylopod segments. Includes as parts the zeugopodial skeleton. Examples: There are two types of zeugopod: forelimb zeugopod (aka forearm), hindlimb zeugopod (aka crus)." [https://github.com/obophenotype/uberon/issues/101, PHENOSCAPE:curators] comment: There exists some controversy about which podial segments are present in some fishes, e.g. if the autopod is not newly evolved in tetrapods, there is a question as to which segments are actually present in basal vertebrate taxa.[PHENOSCAPE:curators] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "epipodium" EXACT [MA:th] @@ -211646,6 +214575,8 @@ id: UBERON:0002472 name: stylopod def: "The proximal free limb segment. Includes as parts the stylopod skeleton." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "propodium" EXACT [MA:th] synonym: "proximal free limb segment" EXACT [FMA:83014] @@ -211673,6 +214604,8 @@ property_value: terminology_notes "Naming conventions for pod terms under discus id: UBERON:0002473 name: intercerebral commissure def: "A commissure that connects the two cerebral hemispheres. Examples: anterior commissure, corpus callosum." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "commissure of cerebrum" RELATED [] synonym: "inter-hemispheric commissure" RELATED [] synonym: "interhemispheric commissure" RELATED [MA:0002721] @@ -211693,6 +214626,8 @@ relationship: part_of UBERON:0002437 ! cerebral hemisphere white matter id: UBERON:0002474 name: cerebellar peduncular complex def: "A composite structure of the brain stem, which is subdivided into the superior cerebellar peduncle of pons, the decussation of superior cerebellar peduncle and the superior cerebellar peduncle of midbrain (MM)[NIF, based on NN]." [BIRNLEX:970] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "basal ganglia (anatomic)" RELATED [NeuroNames:224] synonym: "cerebellar peduncles" EXACT [] @@ -211720,6 +214655,8 @@ id: UBERON:0002475 name: saphenous nerve def: "The largest cutaneous branch of the femoral nerve. [WP,unvetted]." [Wikipedia:Saphenous_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nervus saphenus" RELATED OMO:0003011 [Wikipedia:Saphenous_nerve] xref: EMAPA:36625 @@ -211738,6 +214675,8 @@ id: UBERON:0002476 name: lateral globus pallidus def: "The more lateral of the two segments of the globus pallidus, abutting the putamen." [BIRNLEX:1610] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "external globus pallidus" EXACT [] synonym: "external pallidum" EXACT [BIRNLEX:1610] @@ -211795,6 +214734,8 @@ name: medial globus pallidus def: "The more medial segment of the globus pallidus." [BIRNLEX:1555] comment: See also: endopeduncular nucleus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "entopeduncular nucleus" RELATED [MA:0002768] synonym: "entopeduncular nucleus (monakow)" EXACT [FMA:61840] @@ -211858,6 +214799,8 @@ property_value: external_definition "The medial globus pallidus (or internal, GP id: UBERON:0002478 name: orbitosphenoid def: "The bone that is situated in the orbit on either side of the presphenoid; it generally forms a part of the sphenoid in the adult, and may be independent in the young." [ISBN:0-683-40008-8, MP:0004457] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "ala minor (os sphenoidale)" EXACT [FMA:52869] @@ -211909,6 +214852,8 @@ property_value: external_definition "Large median unpaired cartilage bone consis id: UBERON:0002479 name: dorsal lateral geniculate nucleus def: "The main division of the lateral geniculate body; consists of two magnocellular layers [TA] (strata magnocellularia [TA]) and four parvocellular layers [TA] (strata parvocellularia [TA]) and serves as a processing station in the major pathway from the retina to the cerebral cortex, receiving fibers from the optic tract and giving rise to the geniculocalcarine radiation to the visual cortex in the occipital lobe." [http://www.medilexicon.com/medicaldictionary.php?t=61422] +subset: human_subset +subset: mouse_subset synonym: "corpus geniculatum laterale (Hassler)" RELATED OMO:0003011 [NeuroNames:353] synonym: "DLG" BROAD OMO:0003000 [BIRNLEX:1595, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal nucleus of lateral geniculate body" RELATED [MA:0002775] @@ -211943,6 +214888,8 @@ relationship: part_of UBERON:0002104 {source="NIFSTD"} ! visual system [Term] id: UBERON:0002480 name: ventral lateral geniculate nucleus +subset: human_subset +subset: mouse_subset synonym: "corpus geniculatum externum, nucleus accessorius" EXACT [BIRNLEX:1597] synonym: "corpus geniculatum laterale, pars oralis" EXACT [BIRNLEX:1597] synonym: "DLG" BROAD OMO:0003000 [BIRNLEX:1597, NIFSTD:NeuroNames_abbrevSource] @@ -211986,6 +214933,8 @@ relationship: part_of UBERON:0001926 ! lateral geniculate body id: UBERON:0002481 name: bone tissue def: "Skeletal tissue with a collagen-rich extracellular matrix vascularized, mineralized with hydroxyapatite and typically including osteocytes located in lacunae that communicate with one another by cell processes (in canaliculi). Bone is deposited by osteoblasts." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000047] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "bone" RELATED [MESH:A02.835.232] @@ -212018,6 +214967,8 @@ id: UBERON:0002482 name: lamellar bone def: "Bone tissue that has a regular parallel alignment of collagen into sheets (lamellae) and is mechanically strong." [Wikipedia:Bone#Woven_or_lamellar] comment: histological classification, lamellar vs woven. Note that only FMA has woven +subset: human_subset +subset: mouse_subset xref: EMAPA:37625 {source="MA:th"} xref: FMA:224806 xref: galen:LamellarBone @@ -212030,6 +214981,8 @@ id: UBERON:0002483 name: trabecular bone tissue def: "Bone tissue that has a lattice-like or spongy structure; it is highly vascular and contains intercommunicating spaces filled with bone marrow." [ISBN:0-683-40008-8, MGI:csmith, MP:0000130] comment: one of the two types of osseous tissue that form bones. Compared to compact bone, which is the other type of osseous tissue, it has a higher surface area but is less dense, softer, weaker, and less stiff. It typically occurs at the ends of long bones, proximal to joints and within the interior of vertebrae. Cancellous bone is highly vascular and frequently contains red bone marrow where hematopoiesis, which is the production of blood cells, occurs. The primary anatomical and functional unit of cancellous bone is the trabecula. +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cancellated bone" RELATED [BTO:0001700] @@ -212063,6 +215016,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/p id: UBERON:0002484 name: bone marrow cavity def: "The medullary cavities of the bones where bone marrow is stored." [ISBN:0-683-40008-8, MP:0000065, PMID:10709991] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cavity of cancellous bone" EXACT [] synonym: "marrow cavity" EXACT [FMA:83698] @@ -212082,6 +215037,8 @@ property_value: structure_notes "Located in the main shaft (cortical bone) of a id: UBERON:0002485 name: prostate duct def: "The minute canals that pass the prostatic secretions to the urethra." [MP:0009734] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "duct of prostate" EXACT [] synonym: "duct of prostate gland" EXACT [] @@ -212108,6 +215065,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/p id: UBERON:0002486 name: glottis def: "The vocal apparatus of the larynx, which includes the vocal cords and the opening between them." [ISBN:0-397-51047-0, MGI:cwg, MP:0002255] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: AAO:0010610 @@ -212130,6 +215089,8 @@ property_value: external_definition "A small, slit-like aperture lying longitudi id: UBERON:0002487 name: tooth cavity def: "The central hollow space of a tooth." [ISBN:0-683-40008-8, MP:0002819] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cavitas dentis" EXACT [] @@ -212152,6 +215113,8 @@ relationship: part_of UBERON:0001091 ! calcareous tooth id: UBERON:0002488 name: helix of outer ear def: "The helix is the prominent rim of the pinna." [Wikipedia:Helix] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "helical part of pinna" EXACT [] @@ -212174,6 +215137,8 @@ relationship: part_of UBERON:0001757 ! pinna id: UBERON:0002489 name: coronal suture def: "The dense, fibrous connective tissue joint between the tetrapod parietal bones and the frontal bone." [ISBN:0-8036-0655-9, MGI:smb, MP:0003840] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "coronal suture of skull" EXACT [] @@ -212198,6 +215163,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/a/ae/G id: UBERON:0002490 name: frontal suture def: "A suture that connects the two frontal bones of the skull." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "frontal suture of skull" EXACT [] @@ -212224,6 +215191,8 @@ property_value: taxon_notes "in humans, the frontal suture is a dense connective id: UBERON:0002491 name: lambdoid suture def: "The dense, fibrous connective tissue joint between the parietal bones and the occipital bone." [ISBN:0-8036-0655-9, MGI:smb, MP:0003841] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "lambdoid suture of skull" EXACT [] @@ -212250,6 +215219,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/3d/G id: UBERON:0002492 name: sagittal suture def: "The dense, fibrous connective tissue joint between the tetrapod parietal bones." [ISBN:0-8036-0655-9, MGI:smb, MP:0003843] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "sagittal suture of skull" EXACT [] @@ -212271,6 +215242,8 @@ id: UBERON:0002493 name: uterine artery def: "The branch of the internal iliac artery that supplies the uterus and the upper part of the vagina." [MGI:monikat, MP:0003995] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "arteria uterina" RELATED OMO:0003011 [Wikipedia:Uterine_artery] @@ -212300,6 +215273,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ae/Gr id: UBERON:0002494 name: papillary muscle of heart def: "One of the group of myocardial bundles which terminate in the chordae tendineae that attach to the cusps of the atrioventricular valves; each ventricle has an anterior and a posterior papillary muscle; the right ventricle sometimes has a septal papillary muscle." [MGI:anna, MP:0004058] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "musculus papillaris" RELATED OMO:0003011 [Wikipedia:Papillary_muscle] @@ -212332,6 +215307,8 @@ id: UBERON:0002495 name: long bone def: "A long bone is a bone that has a shaft and 2 ends and is longer than it is wide. Long bones have a thick outside layer of compact bone and an inner medullary cavity containing bone marrow. The ends of a long bone contain spongy bone and an epiphyseal plate or line depending on the stage of development. The epiphyseal plate is a hyaline cartilage, where new bone growth takes place, lengthening the bone prior to adulthood. Bone lengthening ceases when this cartilage is lost, leaving a remnant referred to as an epiphyseal line." [https://medlineplus.gov/ency/imagepages/9582.htm, Wikipedia:Long_bone] {seeAlso="https://github.com/obophenotype/uberon/issues/32", seeAlso="https://github.com/obophenotype/uberon/issues/2010"} comment: Endochondral_ossification is an essential process during the rudimentary formation of long bones, with the exception of the clavicle[Wikipedia:Endochondral_ossification]. The medial and and lateral ends undergo EO, the mid-portion is formed by a process with features of EO & IO (the process is shared by the mandible)[ISBN:9780397517251] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "os longum" RELATED [BTO:0004256] @@ -212354,6 +215331,8 @@ property_value: dc:contributor https://github.com/wdahdul id: UBERON:0002496 name: stapes base def: "The flat portion of the stirrup of the ear that fits in the oval window between the middle and inner ear." [http://medical-dictionary.thefreedictionary.com/base+of+stapes] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "base of stapes" EXACT [MA:0002804] @@ -212374,6 +215353,8 @@ relationship: part_of UBERON:0001687 {source="MA"} ! stapes bone id: UBERON:0002497 name: acromion def: "Region of the scapula where the latter meets with the clavicle: attachment point of the clavicle to the scapula in some taxa." [VSAO:0005067] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "acromion of scapula" RELATED [Wikipedia:Acromion] @@ -212401,6 +215382,8 @@ property_value: external_definition "Anterior rounded projection of the pars acr id: UBERON:0002498 name: deltopectoral crest def: "A rough elevation at the middle of the lateral side of the shaft of the humerus to which the deltoid muscle attaches." [ISBN:0-683-40008-8, MP:0004353] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "crista ventralis" EXACT [AAO:0000736] @@ -212432,6 +215415,8 @@ property_value: taxon_notes "In basal Tetrapodomorph lineages often the deltoid id: UBERON:0002499 name: cochlear labyrinth def: "The labyrinth is a system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. It is named by analogy with the mythical maze that imprisoned the Minotaur, because of its appearance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [Wikipedia:Cochlear_labyrinth] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: BTO:0004686 @@ -212452,6 +215437,8 @@ property_value: editor_note "we follow the FMA in placing this in the membranous id: UBERON:0002500 name: zygomatic arch def: "The bony arch in vertebrates that extends along the side or front of the skull beneath the eye socket and is formed by the temporal process of the zygomatic bone and the zygomatic process of the temporal bone." [ISBN:0-683-40008-8, MP:0004469] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "arcus zygomaticus" RELATED OMO:0003011 [Wikipedia:Zygomatic_arch] @@ -212479,6 +215466,8 @@ property_value: terminology_notes "The zygomatic arch is occasionally referred t id: UBERON:0002501 name: oval window def: "The oval opening on the medial wall of the tympanic cavity leading into the vestibule, close to the foot of the stapes." [ISBN:0-683-40008-8, MP:0004479] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "fenestra ovalis" RELATED OMO:0003011 [Wikipedia:Oval_window] @@ -212502,6 +215491,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9d/Gr id: UBERON:0002502 name: round window of inner ear def: "The opening on the medial wall of the middle ear leading into the cochlea, closed in life by the secondary tympanic membrane; serves to regulate fluid pressure in the inner ear." [ISBN:0-683-40008-8, MP:0004480] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cochlear window" RELATED [MA:0002814] @@ -212526,6 +215517,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9d/Gr id: UBERON:0002503 name: greater trochanter def: "The greater trochanter (great trochanter) of the femur is a large, irregular, quadrilateral eminence and a part of the skeletal system. It is directed a little lateralward and backward, and, in the adult, is about 1 cm lower than the head. Because the pelvic outlet in the female is larger than in the male, there is a greater distance between the greater trochanters in the female. It has two surfaces and four borders. [WP,unvetted]." [Wikipedia:Greater_trochanter] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "great trochanter" EXACT [] synonym: "greater trochanter of femur" EXACT [] @@ -212546,6 +215539,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/97/Gr id: UBERON:0002504 name: lesser trochanter def: "The lesser trochanter (small trochanter) of the femur is a conical eminence, which varies in size in different subjects [WP,unvetted]." [Wikipedia:Lesser_trochanter] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "lesser trochanter of femur" EXACT [] @@ -212567,6 +215562,8 @@ id: UBERON:0002505 name: spiral modiolar artery def: "The artery which parallels the spiral ganglion in the root of the spiral lamina of the modiolus, serving the ganglion and the cochlear duct and its contents." [MP:0004629] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:52312 xref: MA:0002824 @@ -212585,6 +215582,8 @@ id: UBERON:0002506 name: iris epithelium def: "An epithelium that is part of a iris [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epithelial tissue of iris" EXACT [OBOL:automatic] synonym: "epithelium of iris" EXACT [OBOL:automatic] @@ -212610,6 +215609,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002507 name: abdominal lymph node def: "A lymph node that is part of an abdomen [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "abdomen lymph node" EXACT [OBOL:automatic] synonym: "lymph node of abdomen" EXACT [] @@ -212629,6 +215630,8 @@ id: UBERON:0002508 name: celiac lymph node def: "The visceral glands that are associated with the branches of the celiac artery, including the gastric, hepatic, and pancreaticolienal (splenic) lymph nodes." [MGI:csmith, MP:0009626] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "aJCC level 20 node" RELATED [FMA:12792] @@ -212657,6 +215660,8 @@ id: UBERON:0002509 name: mesenteric lymph node def: "The lymph nodes located in the mesentery, of which there are 3 classes: ileocolic, juxtaintestinal mesenteric, and central superior group." [MP:0005232] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "mesenteric node" EXACT [] synonym: "nodi lymphoidei mesenterici" RELATED OMO:0003011 [BTO:0000767] @@ -212680,6 +215685,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l id: UBERON:0002510 name: anterior fontanel def: "In humans, the anterior fontanelle (bregmatic fontanelle, frontal fontanelle) is the largest, and is placed at the junction of the sagittal suture, coronal suture, and frontal suture; it is lozenge-shaped, and measures about 4 cm in its antero-posterior and 2.5 cm in its transverse diameter. The fontanelle allows the skull to deform during birth to ease its passage through the birth canal and for expansion of the brain after birth. While the posterior and lateral fontanelles are obliterated by about six months after birth, the anterior is not completely closed until about the middle of the second year. Full ossification starts in the late twenties and finishes before the age of 50 . [WP,unvetted]." [Wikipedia:Anterior_fontanelle] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior fontanelle" EXACT [FMA:75439] synonym: "bregmatic fontanelle" RELATED [Wikipedia:Anterior_fontanelle] @@ -212706,6 +215713,8 @@ property_value: external_ontology_notes "TAO:0001739 anterior cranial fontanel i id: UBERON:0002511 name: trabecula carnea def: "The supporting bundles of muscular fibers lining the walls of the ventricles of the heart." [MGI:monikat, MP:0004067] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cardiac trabecula" RELATED [GO:0060347] synonym: "columnae carneae" RELATED OMO:0003011 [Wikipedia:Trabeculae_carneae] @@ -212733,6 +215742,8 @@ id: UBERON:0002512 name: corpus luteum def: "A transient endocrine gland that develops from the postovulatory or atretic follicles and secretes progesterone; it is thought to be related to egg retention[PMID]." [PMID:20959416, Wikipedia:Corpus_luteum] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "corpora lutea" EXACT OMO:0003004 [] @@ -212769,6 +215780,8 @@ property_value: taxon_notes "maintains the endometrium in mammals[WP]. A corpus id: UBERON:0002513 name: endochondral bone def: "Replacement bone that forms within cartilage." [GO:0001958, GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/54, VSAO:0000145] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "cartilaginous bone" RELATED [BTO:0002157] @@ -212803,6 +215816,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-en id: UBERON:0002514 name: intramembranous bone def: "Bone tissue forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]." [GO:0001957, https://github.com/obophenotype/uberon/issues/267, Wikipedia:Intramembranous_ossification] +subset: human_subset +subset: mouse_subset synonym: "intramembranous bones" RELATED OMO:0003004 [ZFA:0001635] synonym: "membrane bone" RELATED [AEO:0000085] xref: EMAPA:36615 @@ -212819,6 +215834,8 @@ property_value: external_definition "Bone that forms directly within mesenchyme, id: UBERON:0002515 name: periosteum def: "The thick fibrous membrane that closely invests the entire surface of a bone except the articular cartilage at synovial joints." [ISBN:0-683-40008-8, MP:0010971] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim xref: BTO:0001022 @@ -212842,6 +215859,8 @@ property_value: has_relational_adjective "periosteal" xsd:string id: UBERON:0002516 name: epiphyseal plate def: "A hyaline cartilage plate in the metaphysis at each end of a long bone. The plate is found in children and adolescents; in adults, who have stopped growing, the plate is replaced by an epiphyseal line." [Wikipedia:Epiphyseal_plate] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cartilago epiphysialis" RELATED [BTO:0000412] @@ -212873,6 +215892,8 @@ id: UBERON:0002517 name: basicranium def: "The base of skull is the most inferior area of the skull, composed of the endocranium and lower parts of the skull roof." [Wikipedia:Base_of_skull] comment: The skull base is formed from a series of cartilages either side of, and rostral to, the notochord, whose tip lies just caudal to the pituitary gland. It is closely associated with the sensory capsules, which partially or completely sur- round the olfactory epithelium, the eye, and the inner ear[PMID:11523816] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "base of cranium" EXACT [] @@ -212899,6 +215920,8 @@ id: UBERON:0002518 name: otolith organ def: "The crystalline particles composed of calcium carbonate and a protein which adhere to the gelatinous membrane of the maculae of the utricle and saccule (otolithic membrane)." [ISBN:0-683-40008-8, MGI:llw2, MP:0002894] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim subset: uberon_slim @@ -212928,6 +215951,8 @@ property_value: homology_notes "In fishes, as in other vertebrates, the vestibul id: UBERON:0002519 name: otolithic part of statoconial membrane def: "The layer of the statoconial membrane that is composed of otoliths." [PMID:2482728] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "membrana statoconiorum" BROAD OMO:0003011 [FMA:75573, FMA:TA] @@ -212951,6 +215976,8 @@ relationship: part_of UBERON:0016567 ! statoconial membrane id: UBERON:0002520 name: submandibular lymph node def: "The submandibular lymph nodes (submaxillary glands in older texts), three to six in number, are placed beneath the body of the mandible in the submaxillary triangle, and rest on the superficial surface of the submaxillary salivary gland. One gland, the middle gland of Stahr, which lies on the external maxillary artery as it turns over the mandible, is the most constant of the series; small lymph glands are sometimes found on the deep surface of the submaxillary salivary glands. The afferents of the submaxillary glands drain the medial palpebral commissure, the cheek, the side of the nose, the upper lip, the lateral part of the lower lip, the gums, and the anterior part of the margin of the tongue. Efferent vessels from the facial and submental glands also enter the submaxillary glands. Their efferent vessels pass to the superior deep cervical glands. [WP,unvetted]." [Wikipedia:Submandibular_lymph_node] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "mandibular lymph node" RELATED SENSU [] @@ -212970,6 +215997,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4e/Il id: UBERON:0002521 name: elastic tissue def: "Connective tissue composed of elastic fibers." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "elastic connective tissue" EXACT [] synonym: "elastic fiber" NARROW [] @@ -212993,6 +216022,8 @@ id: UBERON:0002522 name: tunica media def: "The middle layer of an artery or vein. [WP,unvetted]." [Wikipedia:Tunica_media] comment: May be composed of smooth muscle and elastic tissue +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "tunica media vasorum" RELATED OMO:0003011 [BTO:0002011, Wikipedia:Tunica_media] xref: BTO:0002011 @@ -213015,6 +216046,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/32/I id: UBERON:0002523 name: tunica intima def: "The innermost layer of a blood vessel which is a lining of endothelial cells facing the lumen[Kardong]." [ISBN:0073040584, NCIT:C33820, Wikipedia:Tunica_intima] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "Bichat's tunic" RELATED [BTO:0002012] synonym: "intima" RELATED [BTO:0002012] @@ -213045,6 +216078,8 @@ id: UBERON:0002524 name: mediastinal lymph node def: "A lymph node that is part of a mediastinum. Each consists of several lymph node groups, especially along the trachea (5 groups), along the esophagus and between the lung and the diaphragm. In the mediastinal lymph nodes arises lymphatic ducts, which draines the lymph to the left subclavian vein (to the venous angle in the confluence of the subclavian and deep jugular veins). The mediastinal lymph nodes along the esophagus are in tight connection with the abdominal lymph nodes along the esophagus and the stomach. That fact facilitates spreading of tumors cells through these lymphatics in cases of cancers of the stomach and particularly of the esophagus. Through the mediastinum, the main lymphatic drainage from the abdominal organs goes via the thoracic duct (ductus thoracicus), which drains majority of the lymph from the abdomen to the above mentioned left venous angle." [OBOL:automatic, Wikipedia:Lymph_node#Lymph_nodes_of_the_thorax] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "mediastinal node" EXACT [] xref: EFO:0001670 xref: EMAPA:35555 @@ -213062,6 +216097,8 @@ relationship: located_in UBERON:0003728 ! mediastinum id: UBERON:0002525 name: brachial lymph node def: "The lymph nodes located along the brachial vein that receive drainage from most of the free upper limb and send efferent vessels to the central axillary lymph nodes." [MP:0005231, Wikipedia:Brachial_lymph_nodes] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "nodi lymphoidei brachiales" RELATED OMO:0003011 [Wikipedia:Brachial_lymph_nodes] xref: FMA:44314 @@ -213076,6 +216113,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/73/Gr id: UBERON:0002526 name: lumbar lymph node def: "The lumbar lymph nodes (paraaortic nodes) are a group of lymph nodes residing in the lumbar region. They consist of the following groups: right and left lateral aortic lymph nodes preaortic lymph nodes retroaortic lymph nodes (or 'postaortic')." [Wikipedia:Lumbar_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "aortocaval lymph node" RELATED [FMA:84599] synonym: "aortocaval node" RELATED [FMA:84599] synonym: "area 16 lymph node" RELATED [FMA:84599] @@ -213096,6 +216135,8 @@ is_a: UBERON:0002507 ! abdominal lymph node id: UBERON:0002527 name: pancreatic lymph node def: "A lymph node that is part of a pancreas [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "aJCC level 19 node" RELATED [FMA:16626] synonym: "lymph node of pancreas" EXACT [OBOL:automatic] synonym: "pancreas lymph node" EXACT [OBOL:automatic] @@ -213115,6 +216156,8 @@ relationship: part_of UBERON:0001264 ! pancreas id: UBERON:0002528 name: sacral lymph node def: "A lymph node located in the sacral region." [ncithesaurus:Sacral_Lymph_Node] +subset: human_subset +subset: mouse_subset synonym: "sacral node" EXACT [] xref: FMA:16655 xref: MA:0002883 @@ -213132,6 +216175,8 @@ relationship: part_of UBERON:0005473 ! sacral region id: UBERON:0002529 name: limb segment def: "A major subdivision of a mature or developing limb, including both skeletal elements (or the mesenchyme that gives rise to the skeletal elements) and associated tissues, such as muscle, connective tissue, integument. Examples: autopod region, zeugopod region, stylopod region, metapodial region, arm region. Excludes the limb girdles." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "extremity part" RELATED [] synonym: "free limb segment" EXACT [FMA:241863] synonym: "limb region" RELATED [] @@ -213158,6 +216203,8 @@ id: UBERON:0002530 name: gland def: "An organ that functions as a secretory or excretory organ." [MGI:csmith, MP:0002163] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "Druese" RELATED [BTO:0000522] @@ -213218,6 +216265,8 @@ name: epiblast (generic) def: "In amniote animal embryology, the epiblast is a tissue type derived either from the inner cell mass in mammals or the blastodisc in birds and reptiles. It lies above the hypoblast. In mammalian embryogenesis, the columnar cells of the epiblast are adjacent to the trophoblast, while the cuboidal cells of the hypoblast are closer to the blastocoele. The epiblast, whilst referred to as the primary ectoderm, differentiates to form all three layers of the trilaminar germ disc in a process called gastrulation[WP]. The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation[ZFA]." [Wikipedia:Epiblast, ZFIN:curator] subset: early_development subset: grouping_class +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "blastocyst" RELATED [] @@ -213242,6 +216291,8 @@ id: UBERON:0002533 name: post-anal tail bud def: "The rapidly proliferating mass of cells at the caudal extremity of the embryo; remnant of the primitive node." [BTO:0001445] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -213325,6 +216376,8 @@ id: UBERON:0002537 name: hermaphrodite gonad def: "A gonad with both testicular and ovarian aspects[WP]." [Wikipedia:Ovotestis] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "glandula hermaphroditica" NARROW SENSU [Wikipedia:Ovotestis#In_gastropods] synonym: "hermaphrodite genitalia" EXACT [GO:0040035] synonym: "hermaphrodite gland" NARROW SENSU [Wikipedia:Ovotestis#In_gastropods] @@ -213348,6 +216401,8 @@ id: UBERON:0002538 name: hatching gland def: "The cells of the hatching gland contain enzymes responsible for solubilization of the egg chorion, facilitating the hatching process[GO]. A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland." [ZFIN:curator] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "frontal gland" RELATED [] synonym: "hgg" RELATED [] @@ -213371,6 +216426,8 @@ id: UBERON:0002539 name: pharyngeal arch def: "One of a series of paired bulges that develop along the lateral walls of the foregut. The pharyngeal arches have developmental contributions from endoderm, mesoderm, and neural crest cells and are separated by anterior lateral endoderm out-pockets known as pharyngeal pouches." [http://orcid.org/0000-0002-6601-2165, PMID:16313389, ZFA:yb] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -213404,7 +216461,7 @@ relationship: has_developmental_contribution_from UBERON:0002342 {source="https: relationship: in_taxon NCBITaxon:7711 {source="http://tolweb.org/Chordata/2499"} ! Chordata relationship: part_of NCBITaxon:6072 ! Eumetazoa relationship: part_of UBERON:0008814 ! pharyngeal arch system -relationship: part_of UBERON:0008816 {source="PMID:16313389"} ! embryonic head +relationship: part_of UBERON:8450003 {source="PMID:16313389"} ! embryonic craniocervical region property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray41.png" xsd:anyURI property_value: external_definition "One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010359", ontology="AAO", source="NLM:branchial+arch"} property_value: homology_notes "A conserved feature of all vertebrate embryos is the presence of a series of bulges on the lateral surface of the head, the pharyngeal arches; it is within these structures that the nerves, muscles and skeletal components of the pharyngeal apparatus are laid down.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000155", ontology="VHOG", source="DOI:10.1111/j.1469-7580.2005.00472.x Graham A, Okabe M and Quinlan R, The role of the endoderm in the development and evolution of the pharyngeal arches. J Anat (2005)", source="http://bgee.unil.ch/"} @@ -213448,6 +216505,8 @@ name: germ ring def: "The thickend rim of the blastoderm evident during late blastula and gastrula stages[FishBase]. Embryonic structure which is a uniform thickened annulus at the blastoderm margin, consisting of two layers in addition to the EVL, the epiblast and the hypoblast. The germ ring is formed by the involution of the blastoderm back upon itself[ZFA]." [http://www.fishbase.org/glossary/Glossary.php?q=germ%20ring] subset: early_development subset: efo_slim +subset: human_subset +subset: mouse_subset xref: AAO:0000211 xref: EFO:0003427 xref: MAT:0000255 @@ -213509,6 +216568,8 @@ id: UBERON:0002544 name: digit def: "A subdivision of the autopod that has as part a series of phalanges together with associated vasculature, musculature, integument and nerves. It is continuous with the metapodial subdivision of the autopod, but does not include the metapodials. In species such as humans, fully formed digits are distinct, whereas in other species the digits may be connected by interdigital webbing, or may be completely unseparated (for example, in cetaceans)." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/420] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "acropodial unit" EXACT [] @@ -213563,6 +216624,8 @@ id: UBERON:0002546 name: cranial placode def: "Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic." [http://www.ncbi.nlm.nih.gov/books/NBK53175/, https://github.com/obophenotype/uberon/issues/135, https://github.com/seger/aao/issues/4, https://orcid.org/0000-0002-6601-2165, https://sourceforge.net/p/obo/xenopus-anatomy-xao-term-requests/11/] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "cranial placodes" RELATED OMO:0003004 [XAO:0000305] synonym: "ectodermal cranial placode" EXACT [UBERON:cjm] synonym: "ectodermal placode" BROAD INCONSISTENT [FMA:293966, PMID:22512454] @@ -213575,6 +216638,7 @@ xref: XAO:0000305 is_a: UBERON:0005085 {source="cjm"} ! ectodermal placode relationship: in_taxon NCBITaxon:7711 {source="PMID:11523831", source="PMID:22512454"} ! Chordata relationship: part_of UBERON:0000033 ! head +relationship: part_of UBERON:8450003 ! embryonic craniocervical region property_value: editor_note "Do not merge with neurogenic placode" xsd:string property_value: taxon_notes "Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons" xsd:string {source="PMID:11523831"} property_value: terminology_notes "The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. to avoid confusion, we include neurogenic placode as a subclass" xsd:string @@ -213634,6 +216698,8 @@ property_value: has_relational_adjective "larval" xsd:string id: UBERON:0002549 name: ventral trigeminal tract def: "The Anterior trigeminothalamic tract (or ventral trigeminothalamic tract) serves as pain, temperature, and light touch pathway from the face, head and neck. It receives input from trigeminal nerve, facial nerve, glossopharyngeal nerve and vagus nerve. It receives discriminative tactile and pressure input from the contralateral principal sensory nucleus of CN V, which terminates in the ventral posteromedial nucleus of the thalamus. It then ascends to the contralateral sensory cortex via three neurons ." [Wikipedia:Anterior_trigeminothalamic_tract] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "anterior trigeminothalamic tract" EXACT [FMA:72506] synonym: "tractus trigeminalis ventralis" RELATED OMO:0003011 [NeuroNames:613] @@ -213662,6 +216728,8 @@ relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0002550 name: anterior hypothalamic region +subset: human_subset +subset: mouse_subset synonym: "AHR" BROAD OMO:0003000 [BIRNLEX:1005, NIFSTD:NeuroNames_abbrevSource] synonym: "anterior hypothalamic area" EXACT [DHBA:266441551] synonym: "chiasmal zone" EXACT [FMA:62027] @@ -213685,6 +216753,8 @@ relationship: part_of UBERON:0001898 ! hypothalamus id: UBERON:0002551 name: interstitial nucleus of Cajal def: "The largest and most prominent of the cell groups of the medial longitudinal fasciculus." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "ICjl" BROAD OMO:0003000 [BIRNLEX:1008, NIFSTD:NeuroNames_abbrevSource] synonym: "interstitial nucleus" BROAD [FMA:72432] synonym: "interstitial nucleus of Cajal" RELATED [BAMS:INC] @@ -213720,6 +216790,8 @@ relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum id: UBERON:0002552 name: vestibulocerebellar tract def: "White matter tract containing axons arising in the vestibular ganglion primarily projecting to the ipsilateral cerebellum via the inferior cerebellar peduncle (Heimer, L. The Human Brain, 2nd ed., 1995, pg 370)." [BIRNLEX:1009] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "tractus vestibulocerebelli" RELATED OMO:0003011 [NeuroNames:615] synonym: "vestibulocerebellar fibers" EXACT [FMA:72508] @@ -213737,6 +216809,8 @@ relationship: part_of UBERON:0003023 ! pontine tegmentum id: UBERON:0002553 name: anatomical cavity def: "Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina." [FMA:67552] +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "cavity" BROAD [] xref: BIRNLEX:1011 @@ -213764,6 +216838,8 @@ id: UBERON:0002555 name: intermediate hypothalamic region def: "The portion of the hypothalamus located generally internal to the region of the infundibulum." [http://medical-dictionary.thefreedictionary.com] comment: ) +subset: human_subset +subset: mouse_subset synonym: "area hypothalamica intermedia" EXACT OMO:0003011 [FMA:62028, FMA:TA] synonym: "IHR" BROAD OMO:0003000 [BIRNLEX:1015, NIFSTD:NeuroNames_abbrevSource] synonym: "intermediate hypothalamic area" EXACT [FMA:62028] @@ -213787,6 +216863,8 @@ property_value: taxon_notes "In humans it contains the following nuclei: dorsal [Term] id: UBERON:0002556 name: corticotectal tract +subset: human_subset +subset: mouse_subset synonym: "cortico-tectal tract" RELATED [NeuroNames:485] synonym: "corticotectal fibers" EXACT [FMA:72419] synonym: "corticotectal fibres" EXACT [FMA:72419] @@ -213808,6 +216886,8 @@ relationship: part_of UBERON:0002314 {source="NIFSTD"} ! midbrain tectum id: UBERON:0002557 name: linear nucleus comment: The mesocorticolimbic dopamine (DA) system plays important roles in reward, motivation, learning, memory, and movement. This system arises from the A10 region, comprising the ventral tegmental area and three adjacent midline nuclei (caudal linear nucleus, interfascicular nucleus, and rostral linear nucleus of the raphe)[PMID:21653852] +subset: human_subset +subset: mouse_subset synonym: "Li" BROAD OMO:0003000 [BIRNLEX:1018, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus linearis" RELATED OMO:0003011 [NeuroNames:519] synonym: "rostral and caudal linear nuclei of the raphe" RELATED [NeuroNames:519] @@ -213825,6 +216905,8 @@ relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum [Term] id: UBERON:0002558 name: organ cavity +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "cavity of organ" EXACT [FMA:12237] xref: BIRNLEX:1019 @@ -213836,6 +216918,8 @@ is_a: UBERON:0002553 ! anatomical cavity id: UBERON:0002559 name: medullary reticular formation def: "The reticular formation is a series of brain nuclei located in the medulla oblongata." [GO:0021723] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "bulb reticular formation" EXACT [OBOL:automatic] synonym: "bulbar reticular formation" EXACT [FMA:72241] @@ -213886,6 +216970,8 @@ property_value: external_ontology_notes "ZFA:0000421 is part of the the medulla id: UBERON:0002560 name: temporal operculum def: "Part of temporal lobe overlaying the insular cortex." [BIRNLEX:1025] +subset: human_subset +subset: mouse_subset synonym: "facies supratemporalis" EXACT [FMA:74891] synonym: "operculum temporale" RELATED OMO:0003011 [Wikipedia:Operculum_(brain)] xref: BAMS:TOp @@ -213902,6 +216988,8 @@ relationship: part_of UBERON:0010262 ! operculum of brain id: UBERON:0002561 name: lumen of central nervous system def: "The cavity that is enclosed by the central nervous system. In vertebrates this is the cavity that includes as parts ventricular cavities and the central canal of the spinal cord that develops from the lumen of the neura tube." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "cavity of neuraxis" EXACT [FMA:75007] synonym: "cavity of ventricular system of neuraxis" EXACT [FMA:75007] synonym: "neuraxis cavity" EXACT [FMA:75007] @@ -213920,6 +217008,8 @@ relationship: present_in_taxon NCBITaxon:569425 {source="DOI:10.1186/s12983-014- id: UBERON:0002562 name: superior frontal sulcus def: "The superior frontal sulcus is a sulcus between the superior frontal gyrus and the middle frontal gyrus. [WP,unvetted]." [Wikipedia:Superior_frontal_sulcus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "SFRS" BROAD OMO:0003000 [BIRNLEX:1030, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus f1" EXACT [FMA:83755] @@ -213944,6 +217034,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2f/Gr [Term] id: UBERON:0002563 name: central nucleus of inferior colliculus +subset: human_subset +subset: mouse_subset synonym: "central cortex of the inferior colliculus" RELATED [BAMS:CIC] synonym: "central nucleus of the inferior colliculus" RELATED [NeuroNames:479] synonym: "chief nucleus of inferior colliculus" EXACT [FMA:72413] @@ -213971,6 +217063,8 @@ relationship: part_of UBERON:0001946 ! inferior colliculus id: UBERON:0002564 name: lateral orbital gyrus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "gyrus orbitalis lateralis" RELATED OMO:0003011 [NeuroNames:92] synonym: "gyrus orbitalis longitudinalis externus" RELATED OMO:0003011 [NeuroNames:92] xref: BAMS:LOrG @@ -213991,6 +217085,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0002565 name: olivary pretectal nucleus def: "Small distinct nucleus in the pretectum of mammals involved in the pupillary light reflect. In rats, it is an olive shaped (anterior) nucleus lying ventral to the brachium of the superior colliculus (Paxinos, The rat nervous system, 2nd ed, 1995, pg. 862). Physiologically, it is identified by neurons sensitive to luminance changes." [BIRNLEX:1037] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "anterior pretectal nucleus" RELATED [FMA:72405] @@ -214034,6 +217130,8 @@ property_value: editor_note "B&H states this present in urodeles; modify definit [Term] id: UBERON:0002566 name: superior precentral sulcus +subset: human_subset +subset: mouse_subset synonym: "precentral dimple" EXACT [FMA:83763] synonym: "SPRS" BROAD OMO:0003000 [BIRNLEX:1038, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus praecentralis superior" EXACT [BIRNLEX:1038] @@ -214054,6 +217152,8 @@ property_value: editor_note "todo - compare with precentral sulcus" xsd:string id: UBERON:0002567 name: basal part of pons def: "Ventral subdivision of the pons which consists of the massive pontine pertuberance on pontine ventral surface." [FMA:72244] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "basal part of the pons" RELATED [NeuroNames:616] synonym: "basal portion of pons" EXACT [FMA:72244] @@ -214083,6 +217183,8 @@ relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002568 name: amiculum of dentate nucleus +subset: human_subset +subset: mouse_subset synonym: "amiculum nuclei dentati" RELATED OMO:0003011 [NeuroNames:686] synonym: "amiculum of the dentate nucleus" RELATED [NeuroNames:686] synonym: "dentate nuclear amiculum" EXACT [FMA:72546] @@ -214098,6 +217200,8 @@ relationship: part_of UBERON:0002132 ! dentate nucleus [Term] id: UBERON:0002569 name: transverse temporal sulcus +subset: human_subset +subset: mouse_subset synonym: "sulci temporales transversi" RELATED OMO:0003011 [NeuroNames:128] synonym: "transverse temporal sulci" RELATED OMO:0003004 [] xref: BAMS:tts @@ -214115,6 +217219,8 @@ relationship: part_of UBERON:0001871 ! temporal lobe id: UBERON:0002570 name: medial orbital gyrus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "gyrus orbitalis longitudinalis internus" RELATED OMO:0003011 [NeuroNames:93] synonym: "gyrus orbitalis medialis" RELATED OMO:0003011 [NeuroNames:93] synonym: "gyrus orbitalis medius" RELATED OMO:0003011 [NeuroNames:93] @@ -214134,6 +217240,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b [Term] id: UBERON:0002571 name: external nucleus of inferior colliculus +subset: human_subset +subset: mouse_subset synonym: "external cortex of the inferior colliculus" RELATED [NeuroNames:478] synonym: "external nucleus of the inferior colliculus" RELATED [NeuroNames:478] synonym: "inferior colliculus, external nucleus" RELATED [NeuroNames:478] @@ -214157,6 +217265,8 @@ relationship: part_of UBERON:0001946 ! inferior colliculus [Term] id: UBERON:0002572 name: principal pretectal nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus pretectalis principalis" RELATED OMO:0003011 [NeuroNames:469] xref: BAMS:PPt xref: BIRNLEX:1048 @@ -214173,6 +217283,8 @@ relationship: part_of UBERON:0001944 ! pretectal region id: UBERON:0002573 name: pontine reticular formation def: "The reticular formation is a part of the brain that is involved in actions such as awaking/sleeping cycle, and filtering incoming stimuli to discriminate irrelevant background stimuli. It is essential for governing some of the basic functions of higher organisms, and is one of the phylogenetically oldest portions of the brain. [WP,unvetted]." [Wikipedia:Pontine_reticular_formation] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "formatio reticularis pontis" RELATED OMO:0003011 [NeuroNames:561] synonym: "pons of varolius reticular formation" EXACT [OBOL:automatic] @@ -214215,6 +217327,8 @@ consider: FMA:71259 [Term] id: UBERON:0002575 name: posterior orbital gyrus +subset: human_subset +subset: mouse_subset xref: BAMS:POrG xref: BIRNLEX:1054 xref: FMA:80184 @@ -214231,6 +217345,8 @@ id: UBERON:0002576 name: temporal pole def: "Anterior component of the temporal lobe (rostral boundary) extends caudally to the entorhinal cortex. The medial and lateral boundaries are the medial aspect of the temporal lobe and the superior or inferior temporal sulci, respectively (Christine Fennema-Notestine)." [BIRNLEX:1055] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "polus temporalis" EXACT OMO:0003011 [NeuroNames:126] synonym: "temporal pole, cerebral cortex" RELATED [NeuroNames:126] @@ -214256,6 +217372,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b [Term] id: UBERON:0002577 name: pericentral nucleus of inferior colliculus +subset: human_subset +subset: mouse_subset synonym: "cortex of inferior colliculus" EXACT [FMA:72411] synonym: "dorsal cortex of the inferior colliculus" RELATED [NeuroNames:477] synonym: "inferior colliculus, dorsal nucleus" RELATED [NeuroNames:477] @@ -214278,6 +217396,8 @@ relationship: part_of UBERON:0001946 ! inferior colliculus [Term] id: UBERON:0002578 name: sublentiform nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus sublentiformis" EXACT OMO:0003011 [NeuroNames:471] xref: BAMS:SLn xref: BIRNLEX:1057 {notes="retired in NIFSTD present in neurlex"} @@ -214303,6 +217423,8 @@ consider: FMA:73730 id: UBERON:0002580 name: brachium of superior colliculus def: "Bundle of fibers that passes over the medial geniculate nucleus (in humans) to reach the superior colliculus. Contains afferents from the retina." [BIRNLEX:1065] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "brachium colliculi cranialis" RELATED OMO:0003011 [NeuroNames:474] synonym: "brachium colliculi rostralis" RELATED OMO:0003011 [NeuroNames:474] @@ -214334,6 +217456,8 @@ name: postcentral gyrus def: "Component of the parietal lobe. The appearance and disappearance of the central sulcus were the rostral and caudal boundaries of the postcentral gyrus respectively. The medial and lateral boundaries were the lateral bank of the precentral gyrus and the lateral fissure and/or the medial bank of the superior parietal gyrus respectively (Christine Fennema-Notestine)." [BIRNLEX:1070] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "gyrus centralis posterior" RELATED OMO:0003011 [NeuroNames:105] @@ -214366,6 +217490,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/66/P [Term] id: UBERON:0002582 name: anterior calcarine sulcus +subset: human_subset +subset: mouse_subset synonym: "ACCS" BROAD OMO:0003000 [BIRNLEX:1072, NIFSTD:NeuroNames_abbrevSource] synonym: "anterior calcarine fissure" EXACT [FMA:83750] synonym: "sulcus calcarinus anterior" EXACT [BIRNLEX:1072] @@ -214382,6 +217508,8 @@ disjoint_from: UBERON:0002901 {source="lexical"} ! posterior calcarine sulcus id: UBERON:0002583 name: commissure of superior colliculus def: "A commissure that is part of a superior colliculus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "anterior colliculus commissure" EXACT [OBOL:automatic] synonym: "anterior corpus quadrigeminum commissure" EXACT [OBOL:automatic] @@ -214433,6 +217561,8 @@ consider: FMA:71267 [Term] id: UBERON:0002585 name: central tegmental tract of midbrain +subset: human_subset +subset: mouse_subset synonym: "central tegmental tract of the midbrain" RELATED [NeuroNames:528] synonym: "CTGMB" BROAD OMO:0003000 [BIRNLEX:1081, NIFSTD:NeuroNames_abbrevSource] synonym: "tractus tegmentalis centralis (mesencephali)" RELATED OMO:0003011 [NeuroNames:528] @@ -214450,6 +217580,8 @@ relationship: part_of UBERON:0009643 ! central tegmental tract id: UBERON:0002586 name: calcarine sulcus def: "The calcarine fissure is an anatomical landmark located at the caudal end of the medial surface of the brain. [WP,unvetted]." [Wikipedia:Calcarine_sulcus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "calcarine fissure" EXACT [FMA:83749] synonym: "CCS" BROAD OMO:0003000 [BIRNLEX:1086, NIFSTD:NeuroNames_abbrevSource] @@ -214471,6 +217603,8 @@ relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex [Term] id: UBERON:0002587 name: nucleus subceruleus +subset: human_subset +subset: mouse_subset synonym: "nucleus subcaeruleus" EXACT OMO:0003011 [FMA:72479, FMA:TA] synonym: "nucleus subcoeruleus" RELATED [BAMS:SLC] synonym: "subcaerulean nucleus" EXACT [FMA:72479] @@ -214496,6 +217630,8 @@ id: UBERON:0002588 name: decussation of superior cerebellar peduncle alt_id: UBERON:0003032 def: "Regional part of superior cerebellar peduncle located in the caudal midbrain, at the level of the inferior colliculus, consisting of a large bundle of fibers crossing the midline. It contains fibers projecting from the deep cerebellar nucleus to the midbrain and thalamus through the superior cerebellar peduncle (MM). The decussation of superior cerebellar peduncle is the portion of the superior cerebellar peduncle which crosses into the midbrain. [WP,unvetted]." [BIRNLEX:1089, Wikipedia:Decussation_of_superior_cerebellar_peduncle] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "decussatio brachii conjunctivi" RELATED OMO:0003011 [NeuroNames:527] synonym: "decussatio crurorum cerebello-cerebralium" RELATED OMO:0003011 [NeuroNames:527] @@ -214530,6 +217666,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/26/Gr id: UBERON:0002589 name: lateral corticospinal tract def: "Part of the corticospinal tract located in the spinal cord, formed as 75 to 90% of the corticospinal fibers cross to the opposite side of the brainstem in the pyramidal decussation. This tract descends the length of the spinal cord in the lateral white column (Adapted from Brain Info)." [BIRNLEX:1095] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "corticospinal tract, crossed" EXACT [MBA:1019] @@ -214565,6 +217703,8 @@ id: UBERON:0002590 name: prepyriform area def: "Prepyriform area (or prepiriform cortex) is a portion of the rhinencephalon consisting of paleocortex. Some sources state that it is part of the primary olfactory cortex." [Wikipedia:Prepyriform_area] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "(pre-)piriform cortex" EXACT [BIRNLEX:1097] synonym: "area prepiriformis" RELATED OMO:0003011 [NeuroNames:165] synonym: "eupalaeocortex" RELATED OMO:0003011 [NeuroNames:165] @@ -214599,6 +217739,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0002591 name: oral part of spinal trigeminal nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus oralis tractus spinalis nervi trigemini" RELATED OMO:0003011 [NeuroNames:835] synonym: "nucleus spinalis nervi trigemini, pars oralis" RELATED OMO:0003011 [NeuroNames:835] synonym: "oral part of the spinal trigeminal nucleus" RELATED [NeuroNames:835] @@ -214629,6 +217771,8 @@ relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve id: UBERON:0002592 name: juxtarestiform body def: "Fibers interconnecting the cerebellum and vestibular nuclei, traveling medial to the restiform body (inferior cerebellar peduncle) (Nolte, The Human Brain, 6th ed., pg 497)." [BIRNLEX:1101] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "corpus juxtarestiforme" RELATED OMO:0003011 [NeuroNames:779] xref: BAMS:jrb @@ -214649,6 +217793,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fc/Gr id: UBERON:0002593 name: orbital operculum subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "frontal core" RELATED [NeuroNames:2394] synonym: "gigantopyramidal area 4" RELATED [NeuroNames:2394] synonym: "operculum orbitale" EXACT OMO:0003011 [FMA:74887, FMA:TA] @@ -214668,6 +217814,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002594 name: dentatothalamic tract def: "The dentatothalamic tract (or dentatorubrothalamic tract) is a tract which connects the dentate nucleus and the thalamus. [WP,unvetted]." [Wikipedia:Dentatothalamic_tract] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "dentatothalamic fibers" EXACT [FMA:72462] synonym: "DT" BROAD OMO:0003000 [BIRNLEX:1104, NIFSTD:NeuroNames_abbrevSource] @@ -214686,6 +217834,8 @@ relationship: part_of UBERON:0001943 ! midbrain tegmentum id: UBERON:0002595 name: orbital sulcus def: "The inferior or orbital surface of the frontal lobe is concave, and rests on the orbital plate of the frontal bone. It is divided into four orbital gyri by a well-marked H-shaped orbital sulcus." [Wikipedia:Orbital_sulcus] +subset: human_subset +subset: mouse_subset synonym: "cruciate sulcus of campbell" EXACT [BIRNLEX:1112] synonym: "orbital sulci" EXACT OMO:0003004 [FMA:83770] synonym: "ORBS" BROAD OMO:0003000 [BIRNLEX:1112, NIFSTD:NeuroNames_abbrevSource] @@ -214711,6 +217861,8 @@ relationship: part_of UBERON:0016525 ! frontal lobe id: UBERON:0002596 name: ventral posterior nucleus of thalamus def: "Part of thalamus receiving primary somatic sensory information via the medial lemniscal pathway that projects to the primary somatosensory cortex (adapted from Paxinos, The Rat Nervous System, 2nd Ed, Academic Press, 1995)." [BIRNLEX:1116] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nuclei ventrales posteriores" RELATED OMO:0003011 [NeuroNames:343] synonym: "nucleus ventrales posteriores" EXACT [BIRNLEX:1116] @@ -214749,6 +217901,8 @@ id: UBERON:0002597 name: principal sensory nucleus of trigeminal nerve def: "The principal sensory nucleus (or chief sensory nucleus of V) is a group of second order neurons which have cell bodies in the dorsal Pons. It receives information about discriminative sensation and light touch of the face as well as conscious proprioception of the jaw via first order neurons of CN V. Most of the sensory information crosses the midline and travels to the contralateral ventral posteriomedial (VPM) of the thalamus via the Ventral Trigeminothalamic Tract, but information of the oral cavity travels to the ipsilateral Ventral Posteriomedial (VPM) of the thalamus via the Dorsal Trigeminothalamic Tract. [WP,unvetted]." [GO:0021730, Wikipedia:Chief_sensory_nucleus] comment: GO has pontine nucleus as a child of trigeminal sensory nucleus, WP says this is a synonym, but we have a separate class for this - UBERON:0002151 +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "chief sensory nucleus" EXACT [FMA:54533] synonym: "chief sensory trigeminal nucleus" RELATED [NeuroNames:560] @@ -214806,6 +217960,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gr id: UBERON:0002598 name: paracentral sulcus def: "The paracentral sulcus is a sulcus of the brain. It forms the paracentral lobule's anterior border." [Wikipedia:Paracentral_sulcus] +subset: human_subset +subset: mouse_subset synonym: "PCS" BROAD OMO:0003000 [BIRNLEX:1121, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus paracentralis" RELATED OMO:0003011 [NeuroNames:70] synonym: "sulcus subcentralis medialis" EXACT [BIRNLEX:1121] @@ -214822,6 +217978,8 @@ is_a: UBERON:0013118 ! sulcus of brain [Term] id: UBERON:0002599 name: medial olfactory gyrus +subset: human_subset +subset: mouse_subset synonym: "gyrus medius olfactorius" RELATED OMO:0003011 [NeuroNames:281] synonym: "gyrus olfactorius medialis" RELATED OMO:0003011 [NeuroNames:281] xref: BAMS:MOG @@ -214838,6 +217996,8 @@ id: UBERON:0002600 name: limbic lobe def: "Part of cerebral hemisphere located on the medial surface, forming a ring around the brain stem." [BIRNLEX:1128] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "fornicate convolution" RELATED [NeuroNames:834] @@ -214867,6 +218027,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7e/Hu id: UBERON:0002601 name: fasciolar gyrus def: "A small paired band that passes around the splenium of the corpus callosum from the lateral longitudinal stria to the dentate gyrus[Biology-Online]. A posterior and upward extension of the dentate gyrus, forming a transitional area between the dentate gyrus and the indusium griseum[BTO]." [BTO:0002497, http://www.biology-online.org/dictionary/Fasciolar_gyrus] +subset: human_subset +subset: mouse_subset synonym: "fasciola cinerea" RELATED [BTO:0002497, neuronames:176] synonym: "fasciola cinerea (Reil, Arnold)" RELATED [NeuroNames:176] synonym: "fasciola cinereum" RELATED [NeuroNames:176] @@ -214901,6 +218063,8 @@ id: UBERON:0002602 name: emboliform nucleus alt_id: UBERON:0004071 def: "The small wedge shaped nucleus interposed between the dentate and fastigial nuclei; it receives axons from Purkinje cells of the intermediate area of the cerebral hemispheres and most of its efferent connections travel via the superior cerebellar peduncle." [ISBN:0-683-40008-8, MP:0009981] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "anterior interposed nucleus" EXACT [FMA:72538] @@ -214936,6 +218100,8 @@ id: UBERON:0002603 name: paraterminal gyrus def: "The paraterminal gyrus (subcallosal gyrus, peduncle of the corpus callosum) is a narrow lamina on the medial surface of the hemisphere in front of the lamina terminalis, behind the parolfactory area, and below the rostrum of the corpus callosum. It is continuous around the genu of the corpus callosum with the supracallosal gyrus. [WP,unvetted]." [Wikipedia:Paraterminal_gyrus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "gyrus paraterminalis" RELATED OMO:0003011 [Wikipedia:Paraterminal_gyrus] synonym: "gyrus subcallosus" RELATED OMO:0003011 [Wikipedia:Paraterminal_gyrus] @@ -214962,6 +218128,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gr id: UBERON:0002604 name: ventral nucleus of lateral lemniscus def: "The lateral lemniscus is a tract of axons in the brainstem that carries information about sound from the cochlear nucleus to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. Three distinct, primarily inhibitory, cellular groups are located interspersed within these fibers, and are thus named the nuclei of the lateral lemniscus. [WP,unvetted]." [Wikipedia:Ventral_nucleus_of_the_lateral_lemniscus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "anterior nucleus of lateral lemniscus" EXACT [FMA:72484] synonym: "nucleus anterior lemnisci lateralis" EXACT OMO:0003011 [FMA:72484, FMA:TA] @@ -214992,6 +218160,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/4/44/L id: UBERON:0002605 name: precentral operculum def: "The ventrolateral lip of the precentral gyrus, which overlies the insula and is bounded by the lateral fissure (Brain Info)." [BIRNLEX:1141] +subset: human_subset +subset: mouse_subset synonym: "brodmann's area 6" RELATED [NeuroNames:2395] synonym: "operculum precentrale" EXACT OMO:0003011 [FMA:74888, FMA:TA] xref: BAMS:pro @@ -215006,6 +218176,8 @@ relationship: part_of UBERON:0010262 ! operculum of brain id: UBERON:0002606 name: neuropil def: "A cluster of neurites that is part of a nervous system and forms a network of dendrites and axons where synapses are present and in which neuronal somata do not occur." [PMID:21062451] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "neuropilus" RELATED OMO:0003011 [Wikipedia:Neuropil] xref: BIRNLEX:1142 @@ -215028,6 +218200,8 @@ property_value: external_definition "Multi-cell component structure of the centr [Term] id: UBERON:0002607 name: superior rostral sulcus +subset: human_subset +subset: mouse_subset synonym: "SROS" BROAD OMO:0003000 [BIRNLEX:1143, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus rostralis superior" EXACT [BIRNLEX:1143] xref: BAMS:sros @@ -215042,6 +218216,8 @@ is_a: UBERON:0013118 ! sulcus of brain [Term] id: UBERON:0002608 name: caudal part of ventral lateral nucleus +subset: human_subset +subset: mouse_subset synonym: "caudal part of the ventral lateral nucleus" RELATED [NeuroNames:339] synonym: "dorsal part of ventral lateral posterior nucleus (jones)" EXACT [] synonym: "nucleus dorsooralis (van buren)" EXACT [BIRNLEX:1144] @@ -215062,6 +218238,8 @@ relationship: part_of UBERON:0001925 ! ventral lateral nucleus of thalamus [Term] id: UBERON:0002609 name: spinothalamic tract of midbrain +subset: human_subset +subset: mouse_subset synonym: "spinothalamic tract of the midbrain" RELATED [NeuroNames:535] synonym: "STMB" BROAD OMO:0003000 [BIRNLEX:1150, NIFSTD:NeuroNames_abbrevSource] synonym: "tractus spinothalamicus (mesencephali)" RELATED OMO:0003011 [NeuroNames:535] @@ -215079,6 +218257,8 @@ relationship: part_of UBERON:0007703 ! spinothalamic tract id: UBERON:0002610 name: cochlear nuclear complex def: "The cochlear nuclei consist of: (a) the dorsal cochlear nucleus, corresponding to the tuberculum acusticum on the dorso-lateral surface of the inferior peduncle; and (b) the ventral or accessory cochlear nucleus, placed between the two divisions of the nerve, on the ventral aspect of the inferior peduncle. [WP,unvetted]." [Wikipedia:Cochlear_nuclei] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "cochlear nuclei" EXACT [FMA:72240] synonym: "nuclei cochleares" RELATED OMO:0003011 [Wikipedia:Cochlear_nuclei] @@ -215123,6 +218303,8 @@ consider: NCIT:C33172 [Term] id: UBERON:0002612 name: transverse orbital sulcus +subset: human_subset +subset: mouse_subset synonym: "sulcus orbitalis transversus" EXACT [BIRNLEX:1155] synonym: "TOS" BROAD OMO:0003000 [BIRNLEX:1155, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:tos @@ -215138,6 +218320,8 @@ id: UBERON:0002613 name: cerebellum globose nucleus alt_id: UBERON:0004072 def: "The two or three small masses of gray matter that is located medial to the emboliform nucleus and lateral to the fastigial nucleus; it receives axons from the intermediate area of the cerebellar hemispheres and its afferents exit through the superior cerebellar peduncle." [MP:0009982] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "globose nucleus" EXACT [FMA:72536] @@ -215173,6 +218357,8 @@ property_value: taxon_notes "it is recognized in human cerebellum but is not dis [Term] id: UBERON:0002614 name: medial part of ventral lateral nucleus +subset: human_subset +subset: mouse_subset synonym: "medial part of the ventral lateral nucleus" RELATED [NeuroNames:340] synonym: "nucleus ventralis lateralis thalami, pars medialis" EXACT [BIRNLEX:1159] synonym: "nucleus ventralis lateralis, pars medialis" RELATED OMO:0003011 [NeuroNames:340] @@ -215202,6 +218388,8 @@ relationship: part_of UBERON:0001925 ! ventral lateral nucleus of thalamus [Term] id: UBERON:0002615 name: ventral tegmental decussation +subset: human_subset +subset: mouse_subset synonym: "anterior tegmental decussation" EXACT [FMA:72452] synonym: "decussatio inferior (Forel)" RELATED OMO:0003011 [NeuroNames:524] synonym: "decussatio tegmentalis anterior" EXACT OMO:0003011 [FMA:72452, FMA:TA] @@ -215232,6 +218420,8 @@ relationship: part_of UBERON:0002691 ! ventral tegmental area id: UBERON:0002616 name: regional part of brain def: "Anatomical divisons of the brain according to one or more criteria, e.g. cytoarchitectural, gross anatomy. Parts may be contiguous in 3D or not, e.g., basal ganglia." [BIRNLEX:1167] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "anatomical structure of brain" EXACT [OBOL:automatic] synonym: "biological structure of brain" EXACT [OBOL:automatic] @@ -215256,6 +218446,8 @@ relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0002617 name: pars postrema of ventral lateral nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus dorsointermedius externus magnocellularis (hassler)" EXACT [BIRNLEX:1170] synonym: "nucleus lateralis intermedius mediodorsalis situs postremus" EXACT [BIRNLEX:1170] synonym: "nucleus ventralis lateralis thalami, pars postrema" EXACT [BIRNLEX:1170] @@ -215282,6 +218474,8 @@ relationship: part_of UBERON:0001925 ! ventral lateral nucleus of thalamus id: UBERON:0002618 name: root of trochlear nerve alt_id: UBERON:0002674 +subset: human_subset +subset: mouse_subset synonym: "4nf" BROAD OMO:0003000 [BIRNLEX:1172, NIFSTD:NeuroNames_abbrevSource] synonym: "central part of trochlear nerve" EXACT [FMA:71116] synonym: "fibrae nervi trochlearis" RELATED OMO:0003011 [NeuroNames:486] @@ -215328,6 +218522,8 @@ consider: SCTID:119408004 id: UBERON:0002620 name: tuber cinereum def: "Part of hypothalamus consisting of hollow eminence of gray matter situated between the mammilary bodies and the optic chiasm visible on the basal surface of the brain (adapted from Wikipedia)." [BIRNLEX:1189, Wikipedia:Tuber_cinereum] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "TBCN" BROAD OMO:0003000 [BIRNLEX:1189, NIFSTD:NeuroNames_abbrevSource] synonym: "tuber cinereum area" RELATED [NeuroNames:1782] @@ -215375,6 +218571,8 @@ consider: FMA:83952 id: UBERON:0002622 name: preoptic periventricular nucleus def: "The preoptic periventricular nucleus is located along the midline and is medial to the medial preoptic nucleus.[WP,unvetted]." [Wikipedia:Preoptic_area#Preoptic_periventricular_nucleus] +subset: human_subset +subset: mouse_subset synonym: "dorsal periventricular hypothalamic nucleus" RELATED [NeuroNames:379] synonym: "nucleus periventricularis hypothalami, pars dorsalis" RELATED OMO:0003011 [NeuroNames:379] synonym: "nucleus periventricularis praeopticus" RELATED OMO:0003011 [NeuroNames:379] @@ -215407,6 +218605,8 @@ def: "Synonym for macrodissected adult human tegmentum (Vicq d'Azyr, 1784; Swans comment: Neuronames includes the substantia nigra, crus cerebri and midbrain tegmentum as substructures of the cerebral peduncle; the mouse atlases only include the crus cerebri as the cerebral peduncle (MM) subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "cerebal peduncle" RELATED [NeuroNames:487] synonym: "cerebral peduncle" EXACT [FMA:62394] @@ -215446,6 +218646,8 @@ id: UBERON:0002624 name: orbital part of inferior frontal gyrus def: "Component of the inferior frontal gyrus.defined as the first gyrus from the precentral gyrus.the remainder of the inferior frontal gyrus once the pars opercularis and triangularis have been defined (Christine Fennema-Notestine)., NeuroNames." [BIRNLEX:1207] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "brodmann's area 36" RELATED [NeuroNames:2410] synonym: "gyrus frontalis inferior, pars orbitalis" EXACT OMO:0003011 [FMA:61982, FMA:TA] synonym: "inferior frontal gyrus, orbital part" EXACT [FMA:61982] @@ -215469,6 +218671,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002625 name: median preoptic nucleus def: "The median preoptic nucleus is located along the midline in a position significantly dorsal to the other 3 preoptic nuclei, at least in the macaca fascicularis brain. It wraps around the top (dorsal), front, and bottom (ventral) surfaces of the anterior commissure. The median preoptic nucleus generates thirst. Drinking decreases noradrenaline release in the median preoptic nucleus." [Wikipedia:Preoptic_area#Median_preoptic_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "median preoptic nucleus (Loo)" RELATED [NeuroNames:378] synonym: "MnPO" BROAD OMO:0003000 [BIRNLEX:1208, NIFSTD:NeuroNames_abbrevSource] @@ -215503,6 +218707,8 @@ relationship: part_of UBERON:0001928 ! preoptic area id: UBERON:0002626 name: head of caudate nucleus def: "Largest part of the caudate nucleus lying lateral to and protruding into the anterior of the lateral ventricle." [BIRNLEX:1212] +subset: human_subset +subset: mouse_subset synonym: "caput (caudatus)" EXACT [FMA:61852] synonym: "caput nuclei caudati" RELATED OMO:0003011 [NeuroNames:227] synonym: "caudate nuclear head" EXACT [FMA:61852] @@ -215522,6 +218728,8 @@ relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0002627 name: capsule of medial geniculate body +subset: human_subset +subset: mouse_subset synonym: "capsula corporis geniculati medialis" EXACT [BIRNLEX:1214] synonym: "capsule of the medial geniculate body" RELATED [NeuroNames:359] synonym: "medial geniculate body capsule" EXACT [FMA:62049] @@ -215536,6 +218744,8 @@ relationship: part_of UBERON:0001927 ! medial geniculate body id: UBERON:0002628 name: tail of caudate nucleus def: "Narrowest part of the caudate nucleus, roughtly defined as that portion that curves ventrally from the body of the caudate nucleus, following the temporal horn of the lateral ventricle." [BIRNLEX:1215] +subset: human_subset +subset: mouse_subset synonym: "cauda (caudatus)" RELATED OMO:0003011 [NeuroNames:229] synonym: "cauda nuclei caudati" RELATED OMO:0003011 [NeuroNames:229] synonym: "caudate nuclear tail" EXACT [FMA:61854] @@ -215556,6 +218766,8 @@ id: UBERON:0002629 name: triangular part of inferior frontal gyrus def: "Component of the inferior frontal gyrus.defined as the second gyrus from the precentral gyrus (Christine Fennema-Notestine)." [BIRNLEX:1216] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "gyrus frontalis inferior, pars triangularis" EXACT OMO:0003011 [FMA:61980, FMA:TA] synonym: "inferior frontal gyrus, pars triangularis" RELATED [http://orcid.org/0000-0001-6755-0259] synonym: "inferior frontal gyrus, triangular part" RELATED [BAMS:IFGTr] @@ -215583,6 +218795,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0002630 name: body of caudate nucleus def: "Part of caudate nucleus lying just dorsal to the thalamus." [BIRNLEX:1217] +subset: human_subset +subset: mouse_subset synonym: "body of the caudate nucleus" RELATED [NeuroNames:228] synonym: "caudate body" RELATED [FMA:61853] synonym: "caudate nuclear body" EXACT [FMA:61853] @@ -215603,6 +218817,8 @@ relationship: part_of UBERON:0001873 ! caudate nucleus id: UBERON:0002631 name: cerebral crus def: "The cerebral crus is the anterior portion of the cerebral peduncle which contains the motor tracts, the plural of which is cerebral crura. In some older texts, it is used as a synonym for the entire cerebral peduncle, not just the anterior portion of it. [WP,unvetted]." [Wikipedia:Cerebral_crus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "base of cerebral peduncle" RELATED [BTO:0004677] synonym: "basis cerebri (Oertel)" RELATED OMO:0003011 [NeuroNames:539] @@ -215640,6 +218856,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn [Term] id: UBERON:0002632 name: medial part of medial mammillary nucleus +subset: human_subset +subset: mouse_subset synonym: "medial mamillary nucleus" RELATED [BAMS:MM] synonym: "medial mammillary nucleus (carpenter)" EXACT [] synonym: "medial mammillary nucleus median part" RELATED [BAMS:MMme] @@ -215669,6 +218887,8 @@ relationship: part_of UBERON:0001939 {source="NIFSTD"} ! medial mammillary nucle id: UBERON:0002633 name: motor nucleus of trigeminal nerve def: "Nucleus located in the pontine tegmentum containing cells that give rise to motor innervation of the jaw through the trigeminal nerve. It receives both crossed and uncrossed fibers from the cerebral cortex (Heimer, L. The Human Brain and Spinal Cord, 2nd ed., 1996, pg 248)." [BIRNLEX:1222] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "motor nucleus" RELATED [NeuroNames:559] @@ -215732,6 +218952,8 @@ property_value: external_ontology_notes "this in ZFA this is part of the medulla id: UBERON:0002634 name: anterior nucleus of hypothalamus def: "A loose heterogeneous collection of cells in the anterior hypothalamus, continuous rostrally with the medial and lateral preoptic areas and caudally with the tuber cinereum." [MESH:A08.186.211.730.317.357.342.063, MP:0008848] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "AH" BROAD OMO:0003000 [BIRNLEX:1226, NIFSTD:NeuroNames_abbrevSource] @@ -215786,6 +219008,8 @@ consider: FMA:62399 [Term] id: UBERON:0002636 name: lateral pulvinar nucleus +subset: human_subset +subset: mouse_subset synonym: "lateral pulvinar nucleus of thalamus" EXACT [FMA:62181] synonym: "LPul" BROAD OMO:0003000 [BIRNLEX:1228, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus pulvinaris lateralis" EXACT [BIRNLEX:1228] @@ -215808,6 +219032,8 @@ id: UBERON:0002637 name: ventral anterior nucleus of thalamus def: "The ventral anterior nucleus is a nucleus of the thalamus." [Wikipedia:Ventral_anterior_nucleus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nucleus lateropolaris" EXACT [BIRNLEX:1232] synonym: "nucleus ventralis anterior" EXACT [BIRNLEX:1232] @@ -215842,6 +219068,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/Th [Term] id: UBERON:0002638 name: medial pulvinar nucleus +subset: human_subset +subset: mouse_subset synonym: "MPul" BROAD OMO:0003000 [BIRNLEX:1233, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus pulvinaris medialis" EXACT [BIRNLEX:1233] synonym: "nucleus pulvinaris medialis thalami" EXACT [BIRNLEX:1233] @@ -215861,6 +219089,8 @@ relationship: part_of UBERON:0002981 ! pulvinar nucleus id: UBERON:0002639 name: midbrain reticular formation def: "Part of the reticular formation located in the midbrain tegmentum." [BIRNLEX:1235] +subset: human_subset +subset: mouse_subset synonym: "formatio reticularis mesencephali" RELATED OMO:0003011 [NeuroNames:501] synonym: "formatio reticularis tegmentalis" RELATED OMO:0003011 [NeuroNames:501] synonym: "formatio reticularis tegmenti mesencephali" RELATED OMO:0003011 [NeuroNames:501] @@ -215889,6 +219119,8 @@ relationship: part_of UBERON:0002275 ! reticular formation id: UBERON:0002640 name: cuneocerebellar tract def: "White matter tract that originates from the cuneate and external cuneate nuclei. It relays ascending spinal fibers in the dorsal funiculus and conveys information from forelimbs to the cerebellum." [BIRNLEX:1238] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "cuneocerebellar fibers" EXACT [BIRNLEX:1238] synonym: "tractus cuneocerebelli" RELATED OMO:0003011 [NeuroNames:803] @@ -215908,6 +219140,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/98/Gr [Term] id: UBERON:0002641 name: oral pulvinar nucleus +subset: human_subset +subset: mouse_subset synonym: "anterior pulvinar nucleus" EXACT [FMA:62180] synonym: "nucleus pulvinaris anterior" EXACT OMO:0003011 [FMA:62180, FMA:TA] synonym: "nucleus pulvinaris oralis" EXACT [BIRNLEX:1239] @@ -215932,6 +219166,8 @@ relationship: part_of UBERON:0002981 ! pulvinar nucleus id: UBERON:0002642 name: cuneate fasciculus of medulla def: "Part of cuneate fasciculus found in the medulla." [BIRNLEX:1242] +subset: human_subset +subset: mouse_subset synonym: "fasciculus cuneatus (myelencephali)" EXACT OMO:0003011 [FMA:72623, FMA:TA] synonym: "nucleus pulvinaris oromedialis (Hassler)" RELATED OMO:0003011 [NeuroNames:2190] xref: BAMS:cu @@ -215951,6 +219187,8 @@ property_value: editor_note "TODO - change definition to be the *whole* of the C id: UBERON:0002643 name: decussation of medial lemniscus def: "The sensory decussation or decussation of the lemniscus is a decussation or cross over of axons from the gracile nucleus and cuneate nucleus. The fibres of this decussation are called the internal arcuate fibres and are found at the superior aspect of the closed medulla superior to the motor decussation. It is part of the second neuron in the Posterior column-medial lemniscus pathway. [WP,unvetted]." [Wikipedia:Sensory_decussation] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "decussatio lemnisci medialis" RELATED OMO:0003011 [Wikipedia:Sensory_decussation] synonym: "decussatio lemniscorum" RELATED OMO:0003011 [NeuroNames:788] @@ -215981,6 +219219,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/66/Gr id: UBERON:0002644 name: intermediate orbital gyrus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: BAMS:IOrG xref: BIRNLEX:1247 xref: FMA:80183 @@ -215993,6 +219233,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b [Term] id: UBERON:0002645 name: densocellular part of medial dorsal nucleus +subset: human_subset +subset: mouse_subset synonym: "densocellular part of the medial dorsal nucleus" RELATED [NeuroNames:316] synonym: "MDD" BROAD OMO:0003000 [BIRNLEX:1255, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus medialis dorsalis paralamellaris (Hassler)" EXACT [BIRNLEX:1255] @@ -216010,6 +219252,8 @@ relationship: part_of UBERON:0002739 {source="NIFSTD"} ! medial dorsal nucleus o id: UBERON:0002646 name: dorsal longitudinal fasciculus of medulla def: "Part of dorsal longitudinal fasciculus located in the medulla." [BIRNLEX:1257] +subset: human_subset +subset: mouse_subset synonym: "bundle of Schutz of medulla" EXACT [OBOL:automatic] synonym: "dorsal longitudinal fasciculus of the medulla" RELATED [NeuroNames:783] synonym: "fasciculus longitudinalis dorsalis (myelencephali)" RELATED OMO:0003011 [NeuroNames:783] @@ -216030,6 +219274,8 @@ relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002647 name: magnocellular part of medial dorsal nucleus +subset: human_subset +subset: mouse_subset synonym: "dorsomedial thalamic nucleus, magnocellular part" EXACT [FMA:62161] synonym: "magnocellular mediodorsal nucleus" EXACT [FMA:62161] synonym: "magnocellular nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62161] @@ -216058,6 +219304,8 @@ property_value: curator_notes "See https://github.com/obophenotype/uberon/issues [Term] id: UBERON:0002648 name: anterior median eminence +subset: human_subset +subset: mouse_subset synonym: "AME" BROAD OMO:0003000 [BIRNLEX:1264, NIFSTD:NeuroNames_abbrevSource] synonym: "eminentia mediana anterior" RELATED OMO:0003011 [NeuroNames:403] xref: BAMS:AME @@ -216074,6 +219322,8 @@ relationship: part_of UBERON:0002197 ! median eminence of neurohypophysis id: UBERON:0002649 name: dorsolateral fasciculus of medulla def: "Part of Lissauer's tract located in the medulla." [BIRNLEX:1267] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "dorsolateral fasciculus" EXACT [BIRNLEX:1267] synonym: "dorsolateral fasciculus of the medulla" RELATED [NeuroNames:782] @@ -216102,6 +219352,8 @@ property_value: editor_note "resolve distinction between Lissauer's tract and th [Term] id: UBERON:0002650 name: paralaminar part of medial dorsal nucleus +subset: human_subset +subset: mouse_subset synonym: "dorsomedial thalamic nucleus, paralaminar part" EXACT [FMA:62160] synonym: "MDPL" BROAD OMO:0003000 [BIRNLEX:1276, NIFSTD:NeuroNames_abbrevSource] synonym: "mediodorsal thalamic nucleus paralaminar part" RELATED [BAMS:MDPL] @@ -216130,6 +219382,8 @@ id: UBERON:0002651 name: anterior horn of lateral ventricle def: "Part of the lateral ventricle that extends anteriorly into the frontal lobes, bordered by the head of the caudate nucleus on the lateral side (Adapted from Heimer, 1996)." [BIRNLEX:1279] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "anterior horn of lateral ventricle" EXACT [FMA:74520] synonym: "cornu anterius" RELATED OMO:0003011 [Wikipedia:Anterior_horn_of_lateral_ventricle] @@ -216159,6 +219413,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gr [Term] id: UBERON:0002652 name: posterior median eminence +subset: human_subset +subset: mouse_subset synonym: "eminentia mediana posterior" RELATED OMO:0003011 [NeuroNames:404] synonym: "PME" BROAD OMO:0003000 [BIRNLEX:1280, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:PME @@ -216175,6 +219431,8 @@ relationship: part_of UBERON:0002197 ! median eminence of neurohypophysis id: UBERON:0002653 name: gracile fasciculus of medulla def: "Part of gracile fasiculus located in the medulla." [BIRNLEX:1282] +subset: human_subset +subset: mouse_subset synonym: "column of Goll" EXACT [] synonym: "fasciculus dorsolateralis gracilis (Golli)" RELATED OMO:0003011 [NeuroNames:790] synonym: "fasciculus gracilis (myelencephali)" RELATED OMO:0003011 [NeuroNames:790] @@ -216200,6 +219458,8 @@ relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002654 name: parvocellular part of medial dorsal nucleus +subset: human_subset +subset: mouse_subset synonym: "dorsomedial thalamic nucleus, parvicellular part" EXACT [FMA:62162] synonym: "lateral mediodorsal nucleus" EXACT [FMA:62162] synonym: "lateral nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62162] @@ -216231,6 +219491,8 @@ id: UBERON:0002655 name: body of lateral ventricle def: "Part of lateral ventricle consisting of the central portion that lies dorsally, bounded by the thalamus on the ventral side (Adapted from Heimer, 1996)." [BIRNLEX:1287] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "central part of lateral ventricle" EXACT [FMA:83703] synonym: "corpus ventriculi lateralis" EXACT OMO:0003011 [FMA:83703, FMA:TA] @@ -216257,6 +219519,8 @@ property_value: external_definition "The body of lateral ventricle (cella) exten [Term] id: UBERON:0002656 name: periamygdaloid area +subset: human_subset +subset: mouse_subset synonym: "cortical amygdaloid nucleus" RELATED [BIRNLEX:1291] synonym: "gyrus semilunaris" RELATED OMO:0003011 [NeuroNames:166] synonym: "para-amygdaloid cortex" RELATED [FMA:62485] @@ -216293,6 +219557,8 @@ id: UBERON:0002657 name: posterior parahippocampal gyrus def: "The posterior parahippocampal gyrus is a portion of the parahippocampal gyrus. It can show deterioration in Alzheimer's disease." [Wikipedia:Posterior_parahippocampal_gyrus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "gyrus parahippocampalis, pars posterior" RELATED OMO:0003011 [NeuroNames:169] synonym: "parahippocampal gyrus (amaral)" EXACT [] synonym: "parahippocampal gyrus (insausti)" EXACT [BIRNLEX:1295] @@ -216316,6 +219582,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0002658 name: medial lemniscus of midbrain def: "Part of medial lemniscus located within the midbrain." [BIRNLEX:1296] +subset: human_subset +subset: mouse_subset synonym: "lemniscus medialis (mesencephali)" RELATED OMO:0003011 [NeuroNames:533] synonym: "medial lemniscus of the midbrain" RELATED [NeuroNames:533] synonym: "midbrain medial lemniscus" EXACT [OBOL:automatic] @@ -216335,6 +219603,8 @@ relationship: part_of UBERON:0003002 {source="NIFSTD"} ! medial lemniscus id: UBERON:0002659 name: superior medullary velum def: "The superior medullary velum (anterior medullary velum, valve of Vieussens) is a thin, transparent of white substance, which stretches between the superior cerebellar peduncles; on the dorsal surface of its lower half the folia and lingula are prolonged. It forms, together with the superior cerebellar peduncle, the roof of the upper part of the fourth ventricle; it is narrow above, where it passes beneath the inferior colliculi, and broader below, where it is continuous with the white substance of the superior vermis. A slightly elevated ridge, the fraenulum veli, descends upon its upper part from between the inferior colliculi, and on either side of this the trochlear nerve emerges. Blood is supplied by branches from the superior cerebellar artery. [WP,unvetted]." [Wikipedia:Superior_medullary_velum] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "anterior medullary velum" EXACT [FMA:74508] synonym: "rostral medullary velum" RELATED [NeuroNames:593] @@ -216360,6 +219630,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9b/Gr id: UBERON:0002660 name: medial longitudinal fasciculus of midbrain def: "A medial longitudinal fasciculus that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fasciculus longitudinalis medialis (mesencephali)" RELATED OMO:0003011 [NeuroNames:526] synonym: "medial longitudinal fasciculus of the midbrain" RELATED [NeuroNames:526] synonym: "midbrain medial longitudinal fasciculus" EXACT [OBOL:automatic] @@ -216381,6 +219653,8 @@ name: superior frontal gyrus def: "Component of the frontal lobe, lateral aspect. The rostral boundary is the first appearance of the superior frontal sulcus whereas the caudal boundary is the midpoint of the paracentral sulcus on the 'inflated' surface. The medial and lateral boundaries are the medial aspect of the frontal lobe and the superior frontal sulcus respectively (Christine Fennema-Notestine)." [BIRNLEX:1303] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "gyrus F1" RELATED OMO:0003011 [NeuroNames:83] synonym: "gyrus frontalis primus" RELATED OMO:0003011 [NeuroNames:83] @@ -216408,6 +219682,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b [Term] id: UBERON:0002662 name: medial pes lemniscus +subset: human_subset +subset: mouse_subset synonym: "MPL" BROAD OMO:0003000 [BIRNLEX:1310, NIFSTD:NeuroNames_abbrevSource] synonym: "pes lemniscus medialis" RELATED OMO:0003011 [NeuroNames:532] synonym: "superficial pes lemniscus" EXACT [FMA:72460] @@ -216425,6 +219701,8 @@ relationship: part_of UBERON:0001943 ! midbrain tegmentum id: UBERON:0002663 name: septal nuclear complex def: "Collection of nerve cells in the medial forebrain lying generally in front of the anterior commissure (Maryann Martone)." [BIRNLEX:1313] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nuclei septales" RELATED OMO:0003011 [Wikipedia:Septal_nuclei] synonym: "parolfactory nuclei" EXACT [FMA:61845] @@ -216456,6 +219734,8 @@ property_value: external_ontology_notes "in NIFSTD this is the mereological sum [Term] id: UBERON:0002664 name: lateral part of medial mammillary nucleus +subset: human_subset +subset: mouse_subset synonym: "intercalated mammillary nucleus" EXACT [FMA:62346] synonym: "intermediate mammillary nucleus" EXACT [FMA:62346] synonym: "lateral mammillary nucleus (gagel)" EXACT [] @@ -216482,6 +219762,8 @@ relationship: part_of UBERON:0001939 {source="NIFSTD"} ! medial mammillary nucle [Term] id: UBERON:0002665 name: supracallosal gyrus +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "gyrus supracallosus" RELATED OMO:0003011 [NeuroNames:172] synonym: "hippocampus supracommissuralis" RELATED OMO:0003011 [NeuroNames:172] @@ -216502,6 +219784,8 @@ relationship: part_of UBERON:0002600 {source="FMA"} ! limbic lobe [Term] id: UBERON:0002666 name: mesencephalic tract of trigeminal nerve +subset: human_subset +subset: mouse_subset synonym: "me5" BROAD OMO:0003000 [BIRNLEX:1318, NIFSTD:NeuroNames_abbrevSource] synonym: "mesencephalic root of v" EXACT [] synonym: "mesencephalic tract of the trigeminal nerve" RELATED [NeuroNames:596] @@ -216527,6 +219811,8 @@ relationship: part_of UBERON:0001943 ! midbrain tegmentum id: UBERON:0002667 name: lateral septal nucleus def: "Regional part of the septal nuclei, lying dorsal and slightly lateral to the medial septal nucleus. The lateral septum receives the bulk of projections of areas projecting to the septal nuclei (Adapted from Brodal, 1981)." [BIRNLEX:1321] +subset: human_subset +subset: mouse_subset synonym: "lateral parolfactory nucleus" EXACT [FMA:61878] synonym: "lateral septal nucleus (cajal)" EXACT [BIRNLEX:1321] synonym: "lateral septum" EXACT [BIRNLEX:1321] @@ -216556,6 +219842,8 @@ relationship: part_of UBERON:0007628 ! lateral septal complex id: UBERON:0002668 name: oculomotor nerve root def: "Initial segment of the occulomotor nerve as it leaves the midbrain." [BIRNLEX:1335] +subset: human_subset +subset: mouse_subset synonym: "3nf" BROAD OMO:0003000 [BIRNLEX:1323, NIFSTD:NeuroNames_abbrevSource] synonym: "central part of oculomotor nerve" EXACT [FMA:72457] synonym: "fibrae nervi oculomotorii" RELATED OMO:0003011 [NeuroNames:529] @@ -216580,6 +219868,8 @@ property_value: external_ontology_notes "todo - determine pattern for central pa [Term] id: UBERON:0002669 name: anterior horizontal limb of lateral sulcus +subset: human_subset +subset: mouse_subset synonym: "anterior branch of lateral sulcus" EXACT [FMA:83760] synonym: "anterior horizontal limb of lateral fissure" EXACT [FMA:83760] synonym: "anterior horizontal ramus of lateral fissure" EXACT [FMA:83760] @@ -216606,6 +219896,8 @@ relationship: part_of UBERON:0002721 {source="NIFSTD"} ! lateral sulcus [Term] id: UBERON:0002670 name: anterior ascending limb of lateral sulcus +subset: human_subset +subset: mouse_subset synonym: "anterior ascending limb of lateral fissure" EXACT [FMA:83759] synonym: "anterior ascending limb of the lateral fissure" RELATED [NeuroNames:68] synonym: "anterior ascending ramus of lateral sulcus" EXACT [FMA:83759] @@ -216634,6 +219926,8 @@ relationship: part_of UBERON:0002721 {source="NIFSTD"} ! lateral sulcus [Term] id: UBERON:0002671 name: pallidotegmental fasciculus +subset: human_subset +subset: mouse_subset synonym: "fasciculus pallido-tegmentalis" RELATED OMO:0003011 [NeuroNames:530] synonym: "fibrae pallidoolivares" RELATED OMO:0003011 [NeuroNames:530] synonym: "pallidotegmental fascicle" RELATED [NeuroNames:530] @@ -216652,6 +219946,8 @@ relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002672 name: anterior subcentral sulcus +subset: human_subset +subset: mouse_subset synonym: "anterior subcentral sulcus" RELATED [NeuroNames:73] synonym: "sulcus subcentralis anterior" RELATED OMO:0003011 [NeuroNames:73] xref: BAMS:ascs @@ -216668,6 +219964,8 @@ relationship: part_of UBERON:0001870 {source="NIFSTD"} ! frontal cortex id: UBERON:0002673 name: vestibular nuclear complex def: "Nuclear complex containing the vestibular nuclei." [UBERON:cjm] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nuclei vestibulares" RELATED OMO:0003011 [Wikipedia:Vestibular_nuclei] synonym: "nuclei vestibulares in medulla oblongata" EXACT OMO:0003011 [FMA:72239, FMA:TA] @@ -216707,6 +220005,8 @@ property_value: editor_note "In TA they are grouped in both the pons and medulla [Term] id: UBERON:0002675 name: diagonal sulcus +subset: human_subset +subset: mouse_subset synonym: "sulcus diagonalis" RELATED OMO:0003011 [NeuroNames:67] xref: BAMS:dias xref: BIRNLEX:1344 @@ -216721,6 +220021,8 @@ relationship: part_of UBERON:0001870 ! frontal cortex id: UBERON:0002676 name: ventral supraoptic decussation def: "The ventral supraoptic decussation is the crossover point for signals from the left and right eye, en route respectively to the right and left sides of the visual cortex. Occupying the posterior part of the commissure of the optic chiasma is a strand of fibers, the Ventral supraoptic decussation (commissure of Gudden, Gudden's inferior commissure), which is not derived from the optic nerves; it forms a connecting link between the medial geniculate bodies. [WP,unvetted]." [Wikipedia:Ventral_supraoptic_decussation] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "commissura supraoptica ventralis" EXACT OMO:0003011 [FMA:62052, FMA:TA] synonym: "commissura supraoptica ventralis" RELATED OMO:0003011 [Wikipedia:Ventral_supraoptic_decussation] @@ -216774,6 +220076,8 @@ consider: SCTID:119241003 [Term] id: UBERON:0002679 name: anterodorsal nucleus of thalamus +subset: human_subset +subset: mouse_subset synonym: "AD" BROAD OMO:0003000 [BIRNLEX:1358, NIFSTD:NeuroNames_abbrevSource] synonym: "anterior dorsal thalamic nucleus" EXACT [EMAPA:35129] synonym: "anterodorsal nucleus" EXACT [FMA:62141] @@ -216820,6 +220124,8 @@ consider: FMA:67942 [Term] id: UBERON:0002681 name: anteromedial nucleus of thalamus +subset: human_subset +subset: mouse_subset synonym: "AM" BROAD OMO:0003000 [BIRNLEX:1365, NIFSTD:NeuroNames_abbrevSource] synonym: "anteromedial nucleus" EXACT [FMA:62142] synonym: "anteromedial nucleus of the thalamus" EXACT [BIRNLEX:1365] @@ -216852,6 +220158,8 @@ relationship: part_of UBERON:0002788 {source="NIFSTD"} ! anterior nuclear group id: UBERON:0002682 name: abducens nucleus def: "Nucleus located beneath the floor of the 4th ventricle in the pontine tegmentum, containing motor neurons innervating the lateral rectus muscle of the eye (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533)." [BIRNLEX:1366] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "abducens motor nuclei" EXACT OMO:0003004 [TAO:0000713] @@ -216908,6 +220216,8 @@ property_value: external_ontology_notes "part of medulla oblongata in ABA and ZF id: UBERON:0002683 name: rhinal sulcus def: "In the human brain, the rhinencephalon appears as a longitudinal elevation, with a corresponding internal furrow, on the under surface of the hemisphere close to the lamina terminalis; it is separated from the lateral surface of the hemisphere by a furrow, the external rhinal fissure (or rhinal sulcus), and is continuous behind with that part of the hemisphere, which will ultimately form the anterior end of the temporal lobe. [WP,unvetted]." [Wikipedia:Rhinal_sulcus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "fissura rhinalis" EXACT [BIRNLEX:1368] synonym: "fissura rhinalis" RELATED OMO:0003011 [Wikipedia:Rhinal_sulcus] @@ -216937,6 +220247,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/ce/Ge id: UBERON:0002684 name: nucleus raphe obscurus def: "The raphe obscurus projects to the cerebellar lobes VI and VII and to crus II along with the nucleus raphe pontis . This so called obscure nucleus has also been implicated in the modulation of the hypoglossal nerve. It has been observed that the ablation of this nucleus causes a change in the firing pattern in the XII nerve . In addition, the raphe obscurus mediates expiration via the inhibitory effect of serotonin and depresses periodic synaptic potentials . It has also been shown that this nucleus stimulates gastrointestinal motor function; microinjections of 5-HT into the n.r. obscurus increase gastric movement . [WP,unvetted]." [Wikipedia:Nucleus_raphe_obscurus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nucleus raphC) obscurus" RELATED [BAMS:RO] synonym: "nucleus raphes obscurus" EXACT OMO:0003011 [FMA:72585, FMA:TA] @@ -216965,6 +220277,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/94/Gr [Term] id: UBERON:0002685 name: anteroventral nucleus of thalamus +subset: human_subset +subset: mouse_subset synonym: "anterior ventral nucleus of thalamus" EXACT [FMA:62143] synonym: "anteroprincipal thalamic nucleus" EXACT [FMA:62143] synonym: "anteroventral nucleus" EXACT [FMA:62143] @@ -217008,6 +220322,8 @@ id: UBERON:0002686 name: angular gyrus def: "Part of inferior parietal lobule formed by the cortex surrounding the upturned end of the superior temporal sulcus (Nolte, The Human Brain, 6th ed, 2009, pg 659)." [BIRNLEX:1376] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "gyrus angularis" RELATED OMO:0003011 [Wikipedia:Angular_gyrus] synonym: "gyrus parietalis inferior" RELATED OMO:0003011 [NeuroNames:109] @@ -217032,6 +220348,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/86/Su [Term] id: UBERON:0002687 name: area X of ventral lateral nucleus +subset: human_subset +subset: mouse_subset synonym: "anteromedial part of ventral lateral posterior nucleus (jones)" EXACT [] synonym: "area X" EXACT [FMA:62198] synonym: "area X of Olszewski" EXACT [BIRNLEX:1379] @@ -217054,6 +220372,8 @@ id: UBERON:0002688 name: supramarginal gyrus def: "Component of the parietal lobe. The first coronal slice between the superior temporal gyrus and the postcentral gyrus where the supramarginal gyrus appears was the rostral boundary whereas the slice where the supramarginal gyrus becomes continuous with the superior parietal gyrus was the caudal boundary. The medial and lateral boundaries were the lateral banks of the intraparietal sulcus and the medial banks of the lateral fissure and/or the superior temporal gyrus respectively (Christine Fennema-Notestine)." [BIRNLEX:1381] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "anterior part of inferior parietal lobule" EXACT [FMA:61897] @@ -217081,6 +220401,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ec/Ge id: UBERON:0002689 name: supraoptic crest def: "One of the circumventricular organs of the brain. The OVLT is outside the blood brain barrier, and so neurons in this region can respond to factors that are present in the systemic circulation." [https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376, Wikipedia:Organum_vasculosum_of_the_lamina_terminalis] +subset: human_subset +subset: mouse_subset synonym: "olfactory ventricle (olfactory part of lateral ventricle)" RELATED [BAMS:OV] synonym: "organum vasculosum" RELATED [NeuroNames:383] synonym: "organum vasculosum lamina terminalis" EXACT OMO:0003011 [NLXANAT:100313] @@ -217121,6 +220443,8 @@ property_value: external_ontology_notes "NIF has two classes here; Editor note: [Term] id: UBERON:0002690 name: anteroventral periventricular nucleus +subset: human_subset +subset: mouse_subset synonym: "anterior ventral periventricular nucleus of hypothalamus" RELATED [BAMS:AVPe] synonym: "anteroventral periventricular nucleus of the hypothalamus" RELATED [BAMS:AVPV] synonym: "AVPe" BROAD OMO:0003000 [BIRNLEX:1401, NIFSTD:NeuroNames_abbrevSource] @@ -217150,6 +220474,8 @@ id: UBERON:0002691 name: ventral tegmental area def: "Unpaired midbrain region situated in the ventromedial portion of the reticular formation. The VTA is medial to the substantia nigra and ventral to the red nucleus, and extends caudally from the posterior hypothalamus in the diencephalon. The VTA contains dopamine neurons that project to various limbic and cortical areas and is a critical component of the brain's reward circuitry." [BIRNLEX:1415] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "a10a" EXACT OMO:0003011 [FMA:72438, FMA:TA] synonym: "area tegmentalis ventralis" RELATED OMO:0003011 [NeuroNames:521] @@ -217198,6 +220524,8 @@ property_value: external_definition "Region of the mesencephalon that arises fro [Term] id: UBERON:0002692 name: medullary raphe nuclear complex +subset: human_subset +subset: mouse_subset synonym: "nuclei raphe (myelencephali)" RELATED OMO:0003011 [NeuroNames:738] synonym: "raphe medullae oblongatae" EXACT OMO:0003011 [FMA:68874, FMA:TA] synonym: "raphe nuclei of medulla" EXACT [FMA:68874] @@ -217218,6 +220546,8 @@ relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei [Term] id: UBERON:0002693 name: occipitotemporal sulcus +subset: human_subset +subset: mouse_subset synonym: "inferior temporal fissure" EXACT [FMA:74518] synonym: "inferior temporal fissure (Crosby)" EXACT [BIRNLEX:1422] synonym: "inferior temporal sulcus (roberts)" EXACT [] @@ -217244,6 +220574,8 @@ is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus [Term] id: UBERON:0002694 name: anterior hypothalamic commissure +subset: human_subset +subset: mouse_subset synonym: "AHC" BROAD OMO:0003000 [BIRNLEX:1424, NIFSTD:NeuroNames_abbrevSource] synonym: "anterior hypothalamic commissure (Ganser)" EXACT [FMA:62053] synonym: "anterior hypothalamic decussation of Ganser" EXACT [FMA:62053] @@ -217262,6 +220594,8 @@ is_a: UBERON:0011590 {source="FMA"} ! commissure of diencephalon id: UBERON:0002695 name: parieto-occipital sulcus def: "Only a small part of the Parietooccipital Fissure (or parieto-occipital sulcus) is seen on the lateral surface of the hemisphere, its chief part being on the medial surface. The lateral part of the parietooccipital fissure (Fig. 726) is situated about 5 cm. in front of the occipital pole of the hemisphere, and measures about 1.25 cm. in length. The medial part of the parietooccipital fissure (Fig. 727) runs downward and forward as a deep cleft on the medial surface of the hemisphere, and joins the calcarine fissure below and behind the posterior end of the corpus callosum. In most cases it contains a submerged gyrus. [WP,unvetted]." [Wikipedia:Parieto-occipital_sulcus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "fissura parieto-occipitalis" EXACT [BIRNLEX:1428] synonym: "fissura parietooccipitalis" RELATED OMO:0003011 [Wikipedia:Parieto-occipital_sulcus] @@ -217296,6 +220630,8 @@ property_value: external_ontology_notes "two classes in ncit (in general ncit di [Term] id: UBERON:0002696 name: cuneiform nucleus +subset: human_subset +subset: mouse_subset synonym: "area parabigeminalis (Mai)" RELATED OMO:0003011 [NeuroNames:502] synonym: "CnF" BROAD OMO:0003000 [BIRNLEX:1430, NIFSTD:NeuroNames_abbrevSource] synonym: "cuneiform nucleus (Castaldi)" RELATED [NeuroNames:502] @@ -217330,6 +220666,8 @@ relationship: part_of UBERON:0002639 {source="NIFSTD"} ! midbrain reticular form [Term] id: UBERON:0002697 name: dorsal supraoptic decussation +subset: human_subset +subset: mouse_subset synonym: "commissura supraoptica dorsalis" EXACT OMO:0003011 [FMA:62051, FMA:TA] synonym: "commissura supraoptica dorsalis pars ventralis (Meynert)" RELATED OMO:0003011 [NeuroNames:388] synonym: "commissure of Meynert" EXACT [] @@ -217359,6 +220697,8 @@ relationship: part_of UBERON:0002550 {source="NIFSTD"} ! anterior hypothalamic r id: UBERON:0002698 name: preoccipital notch def: "Small indentation on the inferior surface of the cerebral cortex at the border of the occiptal and parietal lobes. It is considered as a landmark because the occipital lobe is located just behind the line that connects that notch with the parietoccipital sulcus (adapted from Wikipedia)." [BIRNLEX:1436] +subset: human_subset +subset: mouse_subset synonym: "incisura parieto-occipitalis" EXACT [BIRNLEX:1436] synonym: "incisura praeoccipitalis" EXACT [BIRNLEX:1436] synonym: "incisura preoccipitalis" EXACT [BIRNLEX:1436] @@ -217381,6 +220721,8 @@ relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0002699 name: supraopticohypophysial tract +subset: human_subset +subset: mouse_subset synonym: "SOH" BROAD OMO:0003000 [BIRNLEX:1440, NIFSTD:NeuroNames_abbrevSource] synonym: "supra-opticohypophysial tract" EXACT [FMA:62054] synonym: "supraopticohypophyseal tract" EXACT [FMA:62054] @@ -217399,6 +220741,8 @@ relationship: part_of UBERON:0002550 {source="FMA", source="NIFSTD"} ! anterior [Term] id: UBERON:0002700 name: subcuneiform nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus subcuneiformis" RELATED OMO:0003011 [NeuroNames:503] synonym: "SubCn" BROAD OMO:0003000 [BIRNLEX:1441, NIFSTD:NeuroNames_abbrevSource] synonym: "subcuneiform area of midbrain" EXACT [FMA:72428] @@ -217416,6 +220760,8 @@ relationship: part_of UBERON:0002639 {source="NIFSTD"} ! midbrain reticular form [Term] id: UBERON:0002701 name: anterior median oculomotor nucleus +subset: human_subset +subset: mouse_subset synonym: "AM3" BROAD OMO:0003000 [BIRNLEX:1445, NIFSTD:Paxinos-Franklin-mouse-2001_abbrevSource] synonym: "anterior medial visceral nucleus" EXACT [FMA:54524] synonym: "anterior median nucleus of oculomotor nerve" EXACT [FMA:72423] @@ -217444,6 +220790,8 @@ id: UBERON:0002702 name: middle frontal gyrus def: "Component of the frontal lobe, lateral aspect (Christine Fennema-Notestine)." [BIRNLEX:1451] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "gyrus F2" RELATED OMO:0003011 [NeuroNames:84] synonym: "gyrus frontalis medialis" EXACT OMO:0003011 [FMA:61859, FMA:TA] @@ -217477,6 +220825,8 @@ id: UBERON:0002703 name: precentral gyrus def: "Component of the frontal lobe. The appearance and disappearance of the central sulcus is the rostral and caudal boundaries of the precentral gyrus respectively. The medial boundary is specific frontal gyri (superior, middle and inferior) whereas the lateral boundary is the medial bank of the central sulcus (Christine Fennema-Notestine)." [BIRNLEX:1455] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "anterior central gyrus" RELATED [NeuroNames:89] @@ -217505,6 +220855,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0002704 name: metathalamus def: "The metathalamus is a composite structure of the thalamus, consisting of the medial geniculate nucleus and the lateral geniculate nucleus. [WP,unvetted]." [Wikipedia:Metathalamus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "corpora geniculata" RELATED OMO:0003011 [Wikipedia:Metathalamus] synonym: "geniculate group of dorsal thalamus" RELATED [BAMS:GENd] @@ -217539,6 +220891,8 @@ id: UBERON:0002705 name: midline nuclear group def: "The midline nuclear group (or midline thalamic nuclei) a region of the thalamus consisting of the following nuclei: paraventricular nucleus of thalamus (nucleus paraventricularis thalami) - not to be confused with paraventricular nucleus of hypothalamus paratenial nucleus (nucleus parataenialis) reuniens nucleus (nucleus reuniens) rhomboidal nucleus (nucleus commissuralis rhomboidalis) subfascicular nucleus (nucleus subfascicularis) [WP,unvetted]." [Wikipedia:Midline_nuclear_group] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "median nuclei of thalamus" EXACT [FMA:62020] synonym: "midline group of the dorsal thalamus" RELATED [BAMS:MTN] @@ -217575,6 +220929,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/Th id: UBERON:0002706 name: posterior nucleus of hypothalamus def: "The posterior nucleus of the hypothalamus is one of the many nuclei that make up the hypothalamic region of the brain. Its function is thermoregulation (heating) of the body. Damage or destruction of this nucleus causes hypothermia." [Wikipedia:Posterior_nucleus_of_hypothalamus] +subset: human_subset +subset: mouse_subset synonym: "area hypothalamica posterior" EXACT OMO:0003011 [FMA:62350, FMA:TA] synonym: "area posterior hypothalami" RELATED OMO:0003011 [NeuroNames:420] synonym: "nucleus hypothalamicus posterior" RELATED OMO:0003011 [NeuroNames:420] @@ -217611,6 +220967,8 @@ name: corticospinal tract alt_id: UBERON:0004095 def: "The corticospinal fibers that arise from the pyramidal cells within the cerebral cortex layer V of the precentral motor area, the premotor area and the postcentral gyrus, then descend into and through the medulla to form the lateral corticospinal tract and the anterior corticospinal tract." [ISBN:0-683-40008-8, MP:0002878] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "corticospinal fibers" EXACT [NeuroNames:1320] @@ -217651,6 +221009,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ac/Gr [Term] id: UBERON:0002708 name: posterior periventricular nucleus +subset: human_subset +subset: mouse_subset synonym: "griseum periventriculare hypothalami" EXACT OMO:0003011 [NeuroNames:419] synonym: "nucleus periventricularis posterior" EXACT [BTO:0002479] synonym: "periventricular hypothalamic nucleus, posterior part" EXACT [NeuroNames:419] @@ -217677,6 +221037,8 @@ relationship: part_of UBERON:0002770 {source="NIFSTD"} ! posterior hypothalamic id: UBERON:0002709 name: posterior nuclear complex of thalamus def: "Part of thalamus comprising ill defined cellular groups in the caudal thalamus at the meso-diencephalic junction. It is not a homogeneous structure but consists of several distinct cellular groups, including the suprageniculate and limitans nuclei, the magnocellular division of the medial geniculate body, portions of the pulvinar nucleus and an area of mixed cell types intercalated between the ventroposterior nucleus and the nucleus lateral posterior (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 97)." [BIRNLEX:1467] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "caudal thalamic nucleus" EXACT [TAO:0000325] synonym: "nuclei posteriores thalami" EXACT [BIRNLEX:1467] @@ -217715,6 +221077,8 @@ property_value: editor_note "ZFA grouping dubious" xsd:string id: UBERON:0002710 name: cingulate sulcus def: "The cingulate sulcus is a sulcus (brain fold) on the medial wall of the cerebral cortex. The frontal and parietal lobes are separated by the cingulate sulcus from the cingulate gyrus. [WP,unvetted]." [Wikipedia:Cingulate_sulcus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "calloso-marginal sulcus" EXACT [FMA:83748] synonym: "callosomarginal fissure" EXACT [FMA:83748] @@ -217743,6 +221107,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2e/Gr [Term] id: UBERON:0002711 name: nucleus of posterior commissure +subset: human_subset +subset: mouse_subset synonym: "Darkshevich nucleus" NARROW [] synonym: "Darkshevich's nucleus" NARROW [] synonym: "nucleus commissura posterior" RELATED OMO:0003011 [NeuroNames:511] @@ -217776,6 +221142,8 @@ property_value: editor_note "in lizards, this is the name of one of the two pret [Term] id: UBERON:0002712 name: premammillary nucleus +subset: human_subset +subset: mouse_subset synonym: "nuclei premamillaris" RELATED OMO:0003011 [NeuroNames:418] synonym: "nucleus premamillaris hypothalami" RELATED OMO:0003011 [NeuroNames:418] synonym: "PMm" BROAD OMO:0003000 [BIRNLEX:1473, NIFSTD:NeuroNames_abbrevSource] @@ -217795,6 +221163,8 @@ relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic reg id: UBERON:0002713 name: circular sulcus of insula def: "A marginal sulcus that is part of a insula [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "central lobe marginal branch of cingulate sulcus" EXACT [OBOL:automatic] synonym: "central lobe marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] synonym: "central lobe marginal sulcus" EXACT [OBOL:automatic] @@ -217878,6 +221248,8 @@ relationship: part_of UBERON:0002022 ! insula id: UBERON:0002714 name: rubrospinal tract def: "White matter tract arising in red nucleus and projecting to spinal cord ventral horn." [BIRNLEX:1476] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "Monakow's tract" EXACT [FMA:72640] synonym: "rubrospinal tract (Monakow)" EXACT [BIRNLEX:1476] @@ -217903,6 +221275,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Me id: UBERON:0002715 name: spinal trigeminal tract of medulla def: "Part of spinal trigeminal tract located in the medulla." [BIRNLEX:1477] +subset: human_subset +subset: mouse_subset synonym: "spinal trigeminal tract of the medulla" RELATED [NeuroNames:791] synonym: "tractus spinalis nervi trigemini (myelencephali)" RELATED OMO:0003011 [NeuroNames:791] xref: BAMS:sp5m @@ -217917,6 +221291,8 @@ relationship: part_of UBERON:0001896 ! medulla oblongata id: UBERON:0002716 name: collateral sulcus def: "The collateral fissure (or sulcus) is on the tentorial surface of the hemisphere and extends from near the occipital pole to within a short distance of the temporal pole. Behind, it lies below and lateral to the calcarine fissure, from which it is separated by the lingual gyrus; in front, it is situated between the hippocampal gyrus and the anterior part of the fusiform gyrus. [WP,unvetted]." [Wikipedia:Collateral_fissure] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "collateral fissure" EXACT [FMA:83751] synonym: "COS" BROAD OMO:0003000 [BIRNLEX:1480, NIFSTD:NeuroNames_abbrevSource] @@ -217942,6 +221318,8 @@ property_value: external_ontology_notes "cnit has two distinct classes; FMA and id: UBERON:0002717 name: rostral interstitial nucleus of medial longitudinal fasciculus def: "The rostral interstitial nucleus of medial longitudinal fasciculus (riMLF) is a portion of the medial longitudinal fasciculus which controls vertical gaze. They project to the vestibular nuclei. [WP,unvetted]." [Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nucleus interstitialis" RELATED OMO:0003011 [Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus] synonym: "nucleus interstitialis rostralis" RELATED OMO:0003011 [NeuroNames:516] @@ -217968,6 +221346,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/90/Gr id: UBERON:0002718 name: solitary tract def: "The solitary tract is a compact fiber bundle that extends longitudinally through the posterolateral region of the medulla. The solitary tract is surrounded by the nucleus of the solitary tract, and descends to the upper cervical segments of the spinal cord. [WP,unvetted]." [Wikipedia:Solitary_tract] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "fasciculus solitarius" RELATED OMO:0003011 [NeuroNames:785] synonym: "respiratory bundle of Gierke" EXACT [] @@ -217994,6 +221374,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/93/Gr id: UBERON:0002719 name: spino-olivary tract def: "The spino-olivary tract is located in the ventral funiculus of the spinal cord. This tract carries proprioception information from muscles and tendons as well as cutaneous impulses to the olivary nucleus. [WP,unvetted]." [Wikipedia:Spino-olivary_tract] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "helweg's tract" EXACT [FMA:72643] synonym: "spino-olivary pathways" RELATED [NeuroNames:809] @@ -218017,6 +221399,8 @@ relationship: part_of UBERON:0014649 ! white matter of medulla oblongata id: UBERON:0002720 name: mammillary peduncle def: "White matter bundle in the posterior hypothalamus containing ascending afferent fibers to the mammillary bodies from the ventral and dorsal tegmental nuclei (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 671)." [BIRNLEX:1486] +subset: human_subset +subset: mouse_subset synonym: "mammillary peduncle (Meynert)" RELATED [NeuroNames:425] synonym: "MPE" BROAD OMO:0003000 [BIRNLEX:1486, NIFSTD:NeuroNames_abbrevSource] synonym: "peduncle of mammillary body" EXACT [FMA:62061] @@ -218042,6 +221426,8 @@ relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic reg id: UBERON:0002721 name: lateral sulcus def: "A sulcus that divides the frontal lobe and parietal lobe above from the temporal lobe below. It is in both hemispheres of the brain but is longer in the left hemisphere. The lateral sulcus is one of the earliest-developing sulci of the human brain. It first appears around the fourteenth gestational week[WP,modified]." [Wikipedia:Lateral_sulcus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "fissura lateralis" EXACT [BIRNLEX:1487] synonym: "fissura lateralis cerebri" EXACT [BIRNLEX:1487] @@ -218080,6 +221466,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/4/41/L id: UBERON:0002722 name: trochlear nucleus def: "Nucleus in the midbrain at the level of the inferior colliculus near the midline, containing the motor neurons giving rise to the trochlear nerve, innervating the contralateral superior oblique extraocular muscle of the eye (Brodal, Neurological Anatomy, 3rd ed, 1981, pg. 533)." [BIRNLEX:1488] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "fourth cranial nerve nucleus" EXACT [FMA:54518] @@ -218131,6 +221519,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/en/thumb/c/c6/D [Term] id: UBERON:0002723 name: mammillary princeps fasciculus +subset: human_subset +subset: mouse_subset synonym: "fasciculus mamillaris" RELATED OMO:0003011 [NeuroNames:422] synonym: "fasciculus mamillaris princeps" RELATED OMO:0003011 [NeuroNames:422] synonym: "fasciculus mammillaris princeps" RELATED OMO:0003011 [NeuroNames:422] @@ -218153,6 +221543,7 @@ relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic reg id: UBERON:0002724 name: limen of insula def: "The anterior basal part of the insular cortex, which separates the lateral surface of the insula from the anterior perforated substance (Heimer, The Human Brain and Spinal Cord, 2nd ed., 1995, pg 80)." [BIRNLEX:1493, https://github.com/obophenotype/uberon/issues/1279] +subset: human_subset synonym: "ambient gyrus" RELATED [NeuroNames:2072] synonym: "angulus gyri olfactorii lateralis" EXACT [FMA:75266] synonym: "gyrus ambiens" RELATED [NeuroNames:2072] @@ -218178,6 +221569,8 @@ id: UBERON:0002726 name: cervical spinal cord def: "A spinal cord segment that adjacent_to a cervical region." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cervical segment of spinal cord" EXACT [FMA:71166] synonym: "cervical segments of spinal cord [1-8]" EXACT [FMA:71166] synonym: "cervical spinal cord" EXACT [FMA:71166] @@ -218203,6 +221596,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002727 name: medial medullary lamina of globus pallidus def: "Thin sheet of white matter dividing the external and internal segments of the globus pallidus in primates." [BIRNLEX:1501] +subset: human_subset +subset: mouse_subset synonym: "globus pallidus, lamina medullaris interna" RELATED OMO:0003011 [NeuroNames:235] synonym: "inner medullary lamina" EXACT [FMA:62470] synonym: "internal medullary l. of corpus striatum" RELATED [BTO:0002251] @@ -218241,6 +221636,8 @@ id: UBERON:0002728 name: entorhinal cortex def: "Component of the temporal lobe on the mesial surface. The rostral and caudal boundaries of the entorhinal cortex are the rostral end of the collateral sulcus and the caudal end of the amygdala respectively. The medial boundary is the medial aspect of the temporal lobe and the lateral boundary is the collateral sulcus. (DK)." [BIRNLEX:1508, Wikipedia:Entorhinal_cortex] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "area entorhinalis (28,34)" RELATED OMO:0003011 [NeuroNames:168] @@ -218285,6 +221682,8 @@ property_value: taxon_notes "In primates it is found on the medial surface of th [Term] id: UBERON:0002729 name: claustral amygdaloid area +subset: human_subset +subset: mouse_subset synonym: "area claustralis amygdalae" RELATED OMO:0003011 [NeuroNames:251] synonym: "claustral amygdalar area" RELATED [NeuroNames:251] synonym: "claustrum diffusa" EXACT [FMA:61869] @@ -218318,6 +221717,8 @@ consider: SCTID:119406000 id: UBERON:0002731 name: vestibulocochlear nerve root def: "Either of the two roots that come of the vestibulocochlear nerve." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "central part of vestibulocochlear nerve" EXACT [FMA:72499] synonym: "fibrae nervi statoacustici" EXACT OMO:0003011 [FMA:72499, FMA:TA] synonym: "root of vestibulocochlear nerve" EXACT [DHBA:12868] @@ -218341,6 +221742,8 @@ relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0002732 name: longitudinal pontine fibers +subset: human_subset +subset: mouse_subset synonym: "corticofugal fibers" RELATED [NeuroNames:618] synonym: "fasiculii longitudinales pyramidales" RELATED OMO:0003011 [NeuroNames:618] synonym: "fibrae pontis longitudinales" EXACT OMO:0003011 [FMA:72513, FMA:TA] @@ -218365,6 +221768,8 @@ relationship: part_of UBERON:0002567 {source="NIFSTD"} ! basal part of pons id: UBERON:0002733 name: intralaminar nuclear group def: "The intralaminar nucleus is a nucleus of the thalamus that contains the following nuclei: central lateral centromedian (or 'central medial') paracentral parafascicular. Some sources also include a 'central dorsal' nucleus. [WP,unvetted]." [Wikipedia:Intralaminar_thalamic_nuclei] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "ILG" BROAD OMO:0003000 [BIRNLEX:1530, NIFSTD:NeuroNames_abbrevSource] synonym: "intralaminar group of the dorsal thalamus" RELATED [BAMS:ILM] @@ -218403,6 +221808,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/ba/Th id: UBERON:0002734 name: superior temporal sulcus def: "The superior temporal sulcus is the sulcus separating the superior temporal gyrus from the middle temporal gyrus in the temporal lobe of the brain. The superior temporal sulcus is the first sulcus inferior to the lateral fissure. It is involved in the perception of where others are gazing and is thus important in determining where others' emotions are being directed. It is also involved in the perception of biological motion." [Wikipedia:Superior_temporal_sulcus] +subset: human_subset +subset: mouse_subset synonym: "parallel sulcus" EXACT [FMA:83783] synonym: "STS" BROAD OMO:0003000 [BIRNLEX:1534, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus t1" EXACT [FMA:83783] @@ -218426,6 +221833,8 @@ relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002735 name: transverse pontine fibers +subset: human_subset +subset: mouse_subset synonym: "fibrae pontis superficiales" RELATED OMO:0003011 [NeuroNames:619] synonym: "fibrae pontis transversae" EXACT OMO:0003011 [FMA:72514, FMA:TA] synonym: "fibrae transversae superficiales pontis" RELATED OMO:0003011 [NeuroNames:619] @@ -218451,6 +221860,8 @@ relationship: part_of UBERON:0002567 {source="NIFSTD"} ! basal part of pons id: UBERON:0002736 name: lateral nuclear group of thalamus def: "The lateral nuclear group is a collection of nuclei on the lateral side of the thalamus. According to MeSH, it consists of the following: lateral dorsal nucleus lateral posterior nucleus pulvinar [WP,unvetted]." [Wikipedia:Lateral_nuclear_group] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "lateral group of nuclei" EXACT [HBA:DTL] synonym: "lateral group of the dorsal thalamus" EXACT [BIRNLEX:1537] @@ -218494,6 +221905,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/Th [Term] id: UBERON:0002737 name: lateral inferior limiting sulcus +subset: human_subset +subset: mouse_subset synonym: "sulcus limitans inferior lateralis" RELATED OMO:0003011 [NeuroNames:828] xref: BAMS:lils xref: BIRNLEX:1540 @@ -218506,6 +221919,8 @@ id: UBERON:0002738 name: isthmus of cingulate gyrus def: "Component of the cingulate cortex. The rostral and caudal boundaries were the posterior division of the cingulate cortex and the parahippocampal gyrus respectively. The medial and lateral boundaries were the medial wall (area unknown) and the precuneus respectively (Christine Fennema-Notestine)." [BIRNLEX:1541] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cingulate gyrus isthmus" EXACT [FMA:62502] synonym: "isthmus cinguli" RELATED OMO:0003011 [NeuroNames:163] synonym: "isthmus gyri cingulatus" RELATED OMO:0003011 [NeuroNames:163] @@ -218536,6 +221951,8 @@ name: medial dorsal nucleus of thalamus def: "The medial dorsal nucleus (or dorsomedial nucleus of thalamus) is a large nucleus in the thalamus. It receives inputs from the Pre-Frontal Cortex and the Limbic System and in turn relays them to the Pre-Frontal Association Cortex. As a result, it plays a crucial role in attention, planning, organization, abstract thinking, multi-tasking and active memory. The connections of the medial dorsal nucleus have even been used to delineate the prefrontal cortex of the Göttingen minipig brain. By stereology the number of brain cells in the region has been estimated to around 6.43 million neurons in the adult human brain and 36.3 million glial cells, and with the newborn having quite different numbers: around 11.2 million neurons and 10.6 million glial cells. Lesions of the medial dorsal nucleus have been associated with Wernicke's encephalopathy [WP,unvetted]." [Wikipedia:Medial_dorsal_nucleus] comment: Editor node: consider generic medial nuclear group and adding medioventral as sibling of this subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "dorsal medial nucleus of thalamus" EXACT [FMA:62156] synonym: "dorsal thalamus medial division" RELATED [BAMS:MED] @@ -218595,6 +222012,8 @@ id: UBERON:0002740 name: posterior cingulate gyrus def: "The posterior cingulate cortex is the backmost part of the cingulate cortex, lying behind the anterior cingulate cortex. This is the upper part of the 'limbic lobe'. The cingulate cortex is made up of an area around the midline of the brain. Surrounding areas include the retrosplenial cortex and the precuneus. Cytoarchitectonically posterior cingulate cortex is associated with Brodmann areas 23 and 31. [WP,unvetted]." [Wikipedia:Posterior_cingulate_gyrus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "cGp" BROAD OMO:0003000 [FMA:61924, FMA:CMA] synonym: "gyrus cinguli posterior" RELATED OMO:0003011 [NeuroNames:162] @@ -218619,6 +222038,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0002741 name: diagonal band of Broca def: "A white fibre bundle descending in the precommissural septum toward the base of the forebrain, immediately rostral to the lamina terminalis; at the base, the bundle turns in the caudolateral direction; traveling through the ventral substantia innominata alongside the optic tract, it fades before reaching the amygdala." [BIRNLEX:1551] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "band of Broca" RELATED [BTO:0002445] synonym: "bandaletta diagonalis (Broca)" RELATED [BTO:0002445] @@ -218659,6 +222080,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gr id: UBERON:0002742 name: lamina of septum pellucidum def: "One of two layers of both white and gray matter of the septum pellucidum. During fetal development there is a space between the two laminae called the cavum septum pellucidum which, in ninety per cent of cases, disappears during infancy." [Wikipedia:Septum_pellucidum#Layers] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lamina of the septum pellucidum" RELATED [NeuroNames:258] synonym: "lamina septi pellucidi" RELATED OMO:0003011 [NeuroNames:258] @@ -218683,6 +222106,8 @@ id: UBERON:0002743 name: basal forebrain def: "A region of the brain consisting of ventral and rostral subcortical regions of the telencephalon, including among others, the basal ganglia, septal nuclei, amygdala, ventral pallidum, substantia innominata, and basal nucleus of Meynert." [BIRNLEX:1560] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "basal forebrain area" RELATED [NeuroNames:1997] synonym: "pars basalis telencephali" RELATED OMO:0003011 [Wikipedia:Basal_forebrain] @@ -218707,6 +222132,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a4/Ba id: UBERON:0002744 name: hilum of dentate nucleus def: "The mouth of the flasklike dentate nucleus of the cerebellum, directed inward (rostromedial), and giving exit to many of the fibers that compose the superior cerebellar peduncle or brachium conjunctivum." [http://www.drugs.com/dict/hilum-of-dentate-nucleus.html] +subset: human_subset +subset: mouse_subset synonym: "dentate nuclear hilum" EXACT [FMA:72548] synonym: "hilum nuclei dentati" RELATED OMO:0003011 [NeuroNames:687] synonym: "hilum of the dentate nucleus" RELATED [NeuroNames:687] @@ -218722,6 +222149,8 @@ relationship: part_of UBERON:0002132 {source="NIFSTD"} ! dentate nucleus [Term] id: UBERON:0002745 name: ventral amygdalofugal projection +subset: human_subset +subset: mouse_subset synonym: "projectiones ventrales amygdalae" EXACT OMO:0003011 [FMA:61977, FMA:TA] synonym: "tractus amygdalofugalis ventralis" RELATED OMO:0003011 [NeuroNames:287] synonym: "ventral amygdalofugal pathway" EXACT [BIRNLEX:1563] @@ -218736,6 +222165,8 @@ relationship: part_of UBERON:0002437 {source="FMA"} ! cerebral hemisphere white [Term] id: UBERON:0002746 name: intermediate periventricular nucleus +subset: human_subset +subset: mouse_subset synonym: "hPe" EXACT OMO:0003011 [FMA:62328, FMA:TA] synonym: "intermediate periventricular hypothalamic nucleus" RELATED [BAMS:IPe] synonym: "intermediate periventricular nucleus of hypothalamus" EXACT [FMA:62328] @@ -218757,6 +222188,8 @@ relationship: part_of UBERON:0002555 {source="NIFSTD"} ! intermediate hypothalam [Term] id: UBERON:0002747 name: neodentate part of dentate nucleus +subset: human_subset +subset: mouse_subset synonym: "neodentate portion of dentate nucleus" EXACT [FMA:72539] synonym: "neodentate portion of the dentate nucleus" RELATED [NeuroNames:684] synonym: "pars neodentata" RELATED OMO:0003011 [NeuroNames:684] @@ -218772,6 +222205,8 @@ relationship: part_of UBERON:0002132 ! dentate nucleus id: UBERON:0002748 name: medial lemniscus of medulla def: "Part of medial lemniscus located within the medulla." [BIRNLEX:1570] +subset: human_subset +subset: mouse_subset synonym: "lemniscus medialis (myelencephali)" RELATED OMO:0003011 [NeuroNames:787] synonym: "medial lemniscus of the medulla" RELATED [NeuroNames:787] synonym: "medulla medial lemniscus" EXACT [OBOL:automatic] @@ -218788,6 +222223,8 @@ relationship: part_of UBERON:0003002 {source="NIFSTD"} ! medial lemniscus id: UBERON:0002749 name: regional part of cerebellar cortex def: "A regional part of brain that is part of a cerebellar cortex [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "cerebellar cortical segment" EXACT [FMA:76924] synonym: "segment of cerebellar cortex" EXACT [BIRNLEX:1571] @@ -218802,6 +222239,8 @@ relationship: part_of UBERON:0002129 ! cerebellar cortex id: UBERON:0002750 name: medial longitudinal fasciculus of medulla def: "A medial longitudinal fasciculus that is part of a medulla [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fasciculus longitudinalis medialis (myelencephali)" RELATED OMO:0003011 [NeuroNames:784] synonym: "medial longitudinal fasciculus of medulla oblongata" EXACT [OBOL:automatic] synonym: "medial longitudinal fasciculus of the medulla" RELATED [NeuroNames:784] @@ -218821,6 +222260,8 @@ id: UBERON:0002751 name: inferior temporal gyrus def: "Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the inferior temporal sulcus whereas the caudal boundary is designated as the temporo-occipital incisure on the cortical surface. The occipitotemporal sulcus is the medial boundary and the inferior temporal sulcus is the lateral boundary (Christine Fennema-Notestine)." [BIRNLEX:1577] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "gyrus temporalis inferior" EXACT [BIRNLEX:1577] synonym: "gyrus temporalis inferior" RELATED OMO:0003011 [Wikipedia:Inferior_temporal_gyrus] @@ -218851,6 +222292,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0002752 name: olivocerebellar tract def: "The olivocerebellar tract (olivocerebellar fibers) leaves the olivary nucleus and pass out through the hilum and decussate with those from the opposite olive in the raphé, then as internal arcuate fibers they pass partly through and partly around the opposite olive and enter the inferior peduncle to be distributed to the cerebellar hemisphere of the opposite side from which they arise. They terminate directly on Purkinje cells as the climbing fiber input system. [WP,unvetted]." [Wikipedia:Olivocerebellar_tract] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "fibrae olivocerebellares" RELATED OMO:0003011 [NeuroNames:804] synonym: "olivocerebellar fibers" RELATED [NeuroNames:804] @@ -218874,6 +222317,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/93/Gr id: UBERON:0002753 name: posterior spinocerebellar tract def: "It ascends the dorsal part of the lateral funiculus and enters the cerebellum via the restiform body. Within the cerebellum, its axons terminate in the ipsilateral hindlimb area of the anterior lobe and in the pyramis and the paramedian lobule predominantly ipsilaterally. Rostrally, it extends to lobules I and II. Afferents from the upper trunk, forelimbs, and the neck to the cerebellum." [BIRNLEX:1585] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "dorsal spinocerebellar tract" EXACT [FMA:72641] synonym: "dorsal spinocerebellar tract of the medulla" RELATED [NeuroNames:807] @@ -218902,6 +222347,8 @@ property_value: external_definition "The dorsal spinocerebellar tract (posterior [Term] id: UBERON:0002754 name: predorsal bundle +subset: human_subset +subset: mouse_subset synonym: "fasciculus praedorsalis (Tschermak)" RELATED OMO:0003011 [NeuroNames:780] synonym: "fasciculus predorsalis" RELATED OMO:0003011 [NeuroNames:780] synonym: "predorsal bundle of Edinger" EXACT [] @@ -218920,6 +222367,8 @@ relationship: part_of UBERON:0014649 ! white matter of medulla oblongata id: UBERON:0002755 name: pyramidal decussation def: "Part of medulla comprising a white matter structure containing nerve fibers of the pyramidal tract crossing from one side of the brain to the other (MM)." [BIRNLEX:1594] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "corticospinal decussation" EXACT [FMA:72633] @@ -218959,6 +222408,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ac/Gr id: UBERON:0002756 name: anterior cingulate gyrus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "anterior cingulate" RELATED [NeuroNames:161] synonym: "cGa" BROAD OMO:0003000 [FMA:61916, FMA:CMA] @@ -218994,6 +222445,8 @@ consider: FMA:62013 id: UBERON:0002758 name: dorsal nucleus of medial geniculate body def: "Dorsal division of the medial geniculate nucleus, as first defined by Morest (1964) in the cat, but also described in the rat. It fills all but the medial edge of the posterior tip in cat, and joins the lateral thalamic nucleus anteriorly (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1261345/?page=3)." [BIRNLEX:1608] +subset: human_subset +subset: mouse_subset synonym: "DMG" BROAD OMO:0003000 [BIRNLEX:1608, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal medial geniculate nucleus" RELATED [BAMS:MGD] synonym: "dorsal nucleus of medial geniculate complex" EXACT [FMA:62216] @@ -219026,6 +222479,8 @@ relationship: part_of UBERON:0001927 ! medial geniculate body [Term] id: UBERON:0002759 name: magnocellular nucleus of medial geniculate body +subset: human_subset +subset: mouse_subset synonym: "corpus geniculatus mediale, pars magnocelluaris" EXACT [BIRNLEX:1612] synonym: "corpus geniculatus mediale, pars magnocellularis" RELATED OMO:0003011 [NeuroNames:358] synonym: "magnocelluar nucleus of medial geniculate complex" EXACT [BIRNLEX:1612] @@ -219067,6 +222522,8 @@ relationship: part_of UBERON:0001927 ! medial geniculate body id: UBERON:0002760 name: ventral corticospinal tract def: "Part of pyramidal tract (corticospinal tract) containing uncrossed fibers and traveling in the ventral funiculus of the spinal cord." [BIRNLEX:1618] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "anterior cerebrospinal fasciculus" RELATED [NeuroNames:2955] @@ -219106,6 +222563,8 @@ id: UBERON:0002761 name: inferior frontal sulcus def: "The inferior frontal sulcus is a sulcus between the middle frontal gyrus and the inferior frontal gyrus. [WP,unvetted]." [Wikipedia:Inferior_frontal_sulcus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "IFRS" BROAD OMO:0003000 [BIRNLEX:1619, NIFSTD:NeuroNames_abbrevSource] synonym: "inferior frontal fissure" EXACT [FMA:83757] @@ -219131,6 +222590,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/72/Gr id: UBERON:0002762 name: internal medullary lamina of thalamus def: "Predominantly white regional part of thalamus consisting of a Y shaped bundle of fibers that runs the anterior-posterior length of thalamus and divides the thalamus into roughly three regions (MM: 2006-10-26)." [BIRNLEX:1621] +subset: human_subset +subset: mouse_subset synonym: "envelope (involucrum medial) (Hassler)" EXACT OMO:0003011 [FMA:62079, FMA:TA] synonym: "internal medullary lamina" EXACT [FMA:62079] synonym: "internal medullary lamina of thalamus" EXACT [FMA:62079] @@ -219158,6 +222619,8 @@ relationship: adjacent_to UBERON:0002776 ! ventral nuclear group id: UBERON:0002763 name: accessory medullary lamina of globus pallidus def: "Thin bundle of myelinated axons that divides the medial pallidal segment into outer and inner portions (Carpenter, Core Text of Neuroanatomy, 3rd ed., 1985, pg. 303)." [BIRNLEX:1626] +subset: human_subset +subset: mouse_subset synonym: "accessory medullar lamina of pallidum" EXACT [BIRNLEX:1626] synonym: "accessory medullary lamina" EXACT [FMA:62471] synonym: "accessory medullary lamina of corpus striatum" EXACT [FMA:62471] @@ -219185,6 +222648,8 @@ relationship: part_of UBERON:0002477 {source="NIFSTD"} ! medial globus pallidus [Term] id: UBERON:0002764 name: inferior precentral sulcus +subset: human_subset +subset: mouse_subset synonym: "inferior part of precentral fissure" EXACT [FMA:83764] synonym: "sulcus praecentralis inferior" EXACT [BIRNLEX:1627] synonym: "sulcus precentralis inferior" EXACT [BIRNLEX:1627] @@ -219200,6 +222665,8 @@ relationship: part_of UBERON:0022252 ! precentral sulcus id: UBERON:0002765 name: lateral medullary lamina of globus pallidus def: "The lateral medullary lamina is a thin white structure located in the basal ganglia of the primate brain. Bounded laterally by the putamen and medially by the globus pallidus, it is defined on the basis of Nissl or myelin stain ( Carpenter-1983 )." [NeuroNames:234] +subset: human_subset +subset: mouse_subset synonym: "external medulary lamina of globus pallidus" EXACT [BIRNLEX:1634] synonym: "external medulary lamina of lentiform nucleus" EXACT [BIRNLEX:1634] synonym: "external medullary lamina of corpus striatum" EXACT [FMA:62469] @@ -219238,6 +222705,8 @@ relationship: part_of UBERON:0001875 {source="FMA", source="NIFSTD"} ! globus pa id: UBERON:0002766 name: fusiform gyrus def: "The fusiform gyrus is part of the temporal lobe. It is also known as the (discontinuous) occipitotemporal gyrus. Other sources have the fusiform gyrus above the occipitotemporal gyrus and underneath the parahippocampal gyrus. [WP,unvetted]." [Wikipedia:Fusiform_gyrus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "gyrus fusiformis" RELATED OMO:0003011 [Wikipedia:Fusiform_gyrus] synonym: "gyrus occipito-temporalis lateralis" RELATED OMO:0003011 [NeuroNames:139] @@ -219267,6 +222736,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Gr [Term] id: UBERON:0002767 name: inferior rostral sulcus +subset: human_subset +subset: mouse_subset synonym: "IROS" BROAD OMO:0003000 [BIRNLEX:1642, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus rostralis inferior" EXACT [BIRNLEX:1642] xref: BAMS:iros @@ -219282,6 +222753,8 @@ is_a: UBERON:0013118 ! sulcus of brain id: UBERON:0002768 name: vestibulospinal tract def: "A long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the vestibular nucleus of the pons towards target cells in the spinal cord[GO]." [GO:0021962] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "tractus vestibulospinalis" RELATED OMO:0003011 [Wikipedia:Vestibulospinal_tract] @@ -219312,6 +222785,8 @@ name: superior temporal gyrus def: "Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the ssuperior temporal sulcus. The caudal boundary is the cauday portion of the superior temporal gyrus (posterior to becoming continuous with the supramarginal gyrus). The medial boundary is the lateral fissure (and when present the supramarginal gyrus), and the lateral boundary is the superior temporal suclus (Christine Fennema-Notestine)." [BIRNLEX:1648] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "gyrus temporalis superior" EXACT [BIRNLEX:1648] @@ -219342,6 +222817,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0002770 name: posterior hypothalamic region def: "The part of the hypothalamus posterior to the middle region consisting of several nuclei including the medial mamillary nucleus, lateral mamillary nucleus, and posterior hypothalamic nucleus (posterior hypothalamic area). The posterior hypothalamic area is concerned with control of sympathetic responses and is sensitive to conditions of decreasing temperature and controls the mechanisms for the conservation and increased production of heat." [MESH:A08.186.211.730.385.357.362] +subset: human_subset +subset: mouse_subset synonym: "hypothalamus posterior" RELATED OMO:0003011 [NeuroNames:411] synonym: "mammillary level of hypothalamus" EXACT [FMA:62029] synonym: "mammillary region" EXACT [FMA:62029] @@ -219367,6 +222844,8 @@ name: middle temporal gyrus def: "Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the superior temporal sulcus whereas the caudal boundary is the temporo-occipital incisure on the cortical surface. The superior temporal sulcus is the medial boundary and the inferior temporal sulcus is the lateral boundary (Christine Fennema-Notestine)." [BIRNLEX:1653] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "gyrus temporalis medius" EXACT [BIRNLEX:1653] synonym: "inferior temporal gyrus (Seltzer)" RELATED [NeuroNames:137] @@ -219397,6 +222876,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0002772 name: olfactory sulcus def: "The medial orbital gyrus presents a well-marked antero-posterior sulcus, the olfactory sulcus, for the olfactory tract. [WP,unvetted]." [Wikipedia:Olfactory_sulcus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "olfactory groove" EXACT [BIRNLEX:1655] synonym: "OLFS" BROAD OMO:0003000 [BIRNLEX:1655, NIFSTD:NeuroNames_abbrevSource] @@ -219422,6 +222903,8 @@ id: UBERON:0002773 name: anterior transverse temporal gyrus def: "The transverse temporal gyri (also called Heschl's gyri or Heschl's convolutions) are found in the area of primary auditory cortex in the superior temporal gyrus of the human brain, occupying Brodmann areas 41 and 42. It is the first cortical structure to process incoming auditory information. Anatomically, the transverse temporal gyri are distinct in that they run mediolaterally (towards the center of the brain) rather than dorsiventrally (front to back) as all other temporal lobe gyri run. The Heschl's gyri are named after Richard L. Heschl." [Wikipedia:Transverse_temporal_gyrus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "anterior transverse convolution of heschl" EXACT [BIRNLEX:1657] synonym: "anterior transverse temporal convolution of heschl" EXACT [] synonym: "first transverse gyrus of Heschl" EXACT [] @@ -219445,6 +222928,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002774 name: posterior transverse temporal gyrus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "gyrus temporalis transversus posterior" RELATED OMO:0003011 [NeuroNames:135] synonym: "posterior transverse convolution of heschl" EXACT [BIRNLEX:1661] synonym: "posterior transverse temporal convolution of heschl" EXACT [] @@ -219461,6 +222946,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002775 name: olivocochlear bundle def: "A pathway that terminates on the hair cells of the cochlea or equivalent organ in the inner ear." [ISBN:0471888893] +subset: human_subset +subset: mouse_subset synonym: "bundle of Rasmussen" EXACT [] synonym: "efferent cochlear bundle" EXACT [FMA:72485] synonym: "efferent cochlear pathway" EXACT [FMA:72485] @@ -219481,6 +222968,8 @@ relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum id: UBERON:0002776 name: ventral nuclear group def: "Nuclei in the ventral part of the thalamus, involved in modulating activity of dorsal thalamic nuclei." [ISBN:0471888893] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "dorsal thalamus, ventral group" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "nuclei ventrales thalami" EXACT [BIRNLEX:1669] @@ -219529,6 +223018,8 @@ consider: FMA:77617 id: UBERON:0002778 name: ventral pallidum def: "Part of the globus pallidus, consisting of the more medial of the two segments. In some species, e.g., primates, it is separated from the lateral segment by the fibers of the medial medullary lamina (MM)." [BIRNLEX:1674] +subset: human_subset +subset: mouse_subset synonym: "fibrae nervi vagi" RELATED OMO:0003011 [NeuroNames:794] synonym: "globus pallidus ventral part" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pallidum ventral region" RELATED [BAMS:PALv] @@ -219552,6 +223043,8 @@ relationship: part_of UBERON:0002743 {source="NIFSTD"} ! basal forebrain id: UBERON:0002779 name: lateral superior olivary nucleus def: "One of two recognized nuclei comprising the superior olive. The lateral superior olivary nucleus is much less prominent in humans than in many rodents and carnivores. In the latter species, it is frequently described as S- or V-shaped." [BIRNLEX:1675] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "accessory olivary nucleus" EXACT [FMA:72472] synonym: "accessory superior olivary nucleus" EXACT [FMA:72472] @@ -219595,6 +223088,8 @@ consider: FMA:61996 [Term] id: UBERON:0002781 name: caudal part of ventral posterolateral nucleus of thalamus +subset: human_subset +subset: mouse_subset synonym: "caudal part of the ventral posterolateral nucleus" RELATED [NeuroNames:346] synonym: "caudal part of ventral posterolateral nucleus" EXACT [FMA:62206] synonym: "nucleus ventralis caudalis lateralis" RELATED OMO:0003011 [NeuroNames:346] @@ -219622,6 +223117,8 @@ id: UBERON:0002782 name: medial superior olivary nucleus def: "One of two subnuclei of the superior olive located within the caudal pontine tegmentum. Appears as a parasagittal row of transversely oriented bipolar neurons in transverse sections of human, with elongated somata in humans and other primates and large caliber dendrites." [BIRNLEX:1682] subset: defined_by_cytoarchitecture +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "chief nucleus of superior olive" EXACT [FMA:72473] synonym: "chief superior olivary nucleus" EXACT [FMA:72473] @@ -219656,6 +223153,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/46/Gr [Term] id: UBERON:0002783 name: central tegmental tract of pons +subset: human_subset +subset: mouse_subset synonym: "central tegmental tract of the pons" RELATED [NeuroNames:601] synonym: "tractus tegmentalis centralis (pontis)" RELATED OMO:0003011 [NeuroNames:601] xref: BAMS:ctgp @@ -219693,6 +223192,8 @@ consider: FMA:62312 id: UBERON:0002786 name: root of abducens nerve def: "Nerve fibers arising from motor neurons in the abducens nucleus that are contained within the pontine tegmentum." [BIRNLEX:1689] +subset: human_subset +subset: mouse_subset synonym: "abducens nerve fibers" EXACT [FMA:72491] synonym: "abducens nerve root" RELATED [BIRNLEX:1277] synonym: "abducens nerve tract" EXACT [FMA:72491] @@ -219720,6 +223221,8 @@ relationship: part_of UBERON:0003023 {gci_relation="part_of", gci_filler="NCBITa id: UBERON:0002787 name: decussation of trochlear nerve def: "The crossing of the two trochlear nerves at their exit through the velum medullare anterius." [http://www.medilexicon.com/medicaldictionary.php?t=23125] +subset: human_subset +subset: mouse_subset synonym: "decussatio fibrarum nervorum trochlearium" EXACT OMO:0003011 [http://www.medilexicon.com/medicaldictionary.php?t=23125] synonym: "decussatio nervorum trochlearium" RELATED OMO:0003011 [NeuroNames:595] synonym: "decussatio trochlearis" RELATED OMO:0003011 [NeuroNames:595] @@ -219749,6 +223252,8 @@ id: UBERON:0002788 name: anterior nuclear group def: "Mostly gray regional part of anterior thalamic region, consisting of the anterior medial, anterior dorsal and anterior lateral thalamic nuclei in primates. In rodents, it consists of anterior medial and anterior ventral divisions, with several subdivisions of each, according to Paxinos (MM: 2006-10-26)." [BIRNLEX:1692] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "ANG" BROAD OMO:0003000 [BIRNLEX:1692, NIFSTD:NeuroNames_abbrevSource] @@ -219813,6 +223318,8 @@ consider: FMA:62311 id: UBERON:0002790 name: dorsal acoustic stria def: "White matter structure containing fibers arising from the cochlear nuclear complex." [BIRNLEX:1698] +subset: human_subset +subset: mouse_subset synonym: "dorsal acoustic stria (Monakow)" RELATED [NeuroNames:602] synonym: "posterior acoustic stria" EXACT [FMA:72496] synonym: "stria cochlearis posterior" EXACT OMO:0003011 [FMA:72496, FMA:TA] @@ -219844,6 +223351,8 @@ consider: FMA:62374 id: UBERON:0002792 name: lumbar spinal cord subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "lumbar segment of spinal cord" EXACT [FMA:71168] synonym: "lumbar segments of spinal cord [1-5]" EXACT [FMA:71168] @@ -219871,6 +223380,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002793 name: dorsal longitudinal fasciculus of pons def: "Part of dorsal longitudinal fasciculus located within the pons." [BIRNLEX:1707] +subset: human_subset +subset: mouse_subset synonym: "dorsal longitudinal fasciculus of the pons" RELATED [NeuroNames:599] synonym: "fasciculus longitudinalis dorsalis (pontis)" RELATED OMO:0003011 [NeuroNames:599] xref: BAMS:dlfp @@ -219886,6 +223397,8 @@ relationship: part_of UBERON:0003045 {source="NIFSTD"} ! dorsal longitudinal fas id: UBERON:0002794 name: medial longitudinal fasciculus of pons def: "A medial longitudinal fasciculus that is part of a pons [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fasciculus longitudinalis medialis (pontis)" RELATED OMO:0003011 [NeuroNames:600] synonym: "medial longitudinal fasciculus of pons of varolius" EXACT [OBOL:automatic] synonym: "medial longitudinal fasciculus of the pons" RELATED [NeuroNames:600] @@ -219906,6 +223419,8 @@ id: UBERON:0002795 name: frontal pole def: "Component of the frontal lobe. The rostral and caudal boundaries of the frontal pole are the superior frontal gyrus and the rostral division of the middle frontal gyrus respectively (Christine Fennama-Notestine)." [BIRNLEX:1716] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "frontal pole" EXACT [FMA:74885] synonym: "frontal pole, cerebral cortex" RELATED [BAMS:FRP] @@ -219931,6 +223446,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Hu [Term] id: UBERON:0002796 name: motor root of trigeminal nerve +subset: human_subset +subset: mouse_subset synonym: "dorsal motor root of v" RELATED [TAO:0000650] synonym: "dorsal motor roots of V" RELATED OMO:0003004 [ZFA:0000650] synonym: "minor root of trigeminal nerve" RELATED [NeuroNames:608] @@ -219968,6 +223485,8 @@ id: UBERON:0002797 name: dorsal trigeminal tract def: "The dorsal trigeminal tract (dorsal trigeminothalamic tract, or lemniscus) is a tract which receives signals from Meissner's corpuscles and Pacinian corpuscles. this tract arises from Principal trigeminal nucleus and terminates in the VPM nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Dorsal_trigeminal_tract] comment: This tract arises from Principal trigeminal nucleus and terminates in the ipsilateral VPM nucleus of the thalamus.[WP] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "dorsal ascending trigeminal tract" EXACT [FMA:72500] synonym: "dorsal division of trigeminal lemniscus" EXACT [FMA:72500] @@ -220001,6 +223520,8 @@ relationship: part_of UBERON:0003023 {source="FMA", source="NIFSTD"} ! pontine t id: UBERON:0002798 name: spinothalamic tract of pons def: "Part of spinothalamic tract that is in the pontine tegmentum." [BIRNLEX:1719] +subset: human_subset +subset: mouse_subset synonym: "pons of varolius spinothalamic tract" EXACT [OBOL:automatic] synonym: "pons of varolius spinothalamic tract of medulla" EXACT [OBOL:automatic] synonym: "pons spinothalamic tract" EXACT [OBOL:automatic] @@ -220025,6 +223546,8 @@ relationship: part_of UBERON:0007703 ! spinothalamic tract [Term] id: UBERON:0002799 name: fronto-orbital sulcus +subset: human_subset +subset: mouse_subset synonym: "fronto-orbital dimple" EXACT [FMA:83768] synonym: "FROS" BROAD OMO:0003000 [BIRNLEX:1724, NIFSTD:NeuroNames_abbrevSource] synonym: "orbito-frontal sulcus" EXACT [FMA:83768] @@ -220044,6 +223567,8 @@ relationship: part_of UBERON:0004167 ! orbitofrontal cortex [Term] id: UBERON:0002800 name: spinal trigeminal tract of pons +subset: human_subset +subset: mouse_subset synonym: "spinal trigeminal tract of the pons" RELATED [NeuroNames:614] synonym: "tractus spinalis nervi trigemini (pontis)" RELATED OMO:0003011 [NeuroNames:614] xref: BAMS:sp5p @@ -220059,6 +223584,8 @@ relationship: part_of UBERON:0003023 {source="NIFSTD"} ! pontine tegmentum id: UBERON:0002801 name: stratum zonale of thalamus def: "The thalamus consists chiefly of gray substance, but its upper surface is covered by a layer of white substance, named the stratum zonale." [Wikipedia:Stratum_zonale_of_thalamus] +subset: human_subset +subset: mouse_subset synonym: "neuraxis stratum" EXACT [FMA:83905] synonym: "stratum zonale of the thalamus" RELATED [NeuroNames:374] synonym: "stratum zonale thalami" EXACT [BIRNLEX:1727] @@ -220076,6 +223603,8 @@ relationship: part_of UBERON:0001897 {source="NIFSTD"} ! dorsal plus ventral tha id: UBERON:0002802 name: left parietal lobe def: "Parietal lobe of the left hemisphere of the brain." [BIRNLEX:1728] +subset: human_subset +subset: mouse_subset xref: BIRNLEX:1728 xref: FMA:72974 xref: SCTID:314147009 @@ -220091,6 +223620,8 @@ relationship: part_of UBERON:0002812 ! left cerebral hemisphere id: UBERON:0002803 name: right parietal lobe def: "Parietal lobe of the right hemisphere of the brain." [BIRNLEX:1729] +subset: human_subset +subset: mouse_subset xref: BIRNLEX:1729 xref: FMA:72973 xref: SCTID:314146000 @@ -220105,6 +223636,8 @@ relationship: part_of UBERON:0002813 ! right cerebral hemisphere id: UBERON:0002804 name: left limbic lobe def: "A limbic lobe that is part of a left cerebral hemisphere." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: BIRNLEX:1780 xref: FMA:72981 is_a: UBERON:0002600 ! limbic lobe @@ -220116,6 +223649,8 @@ relationship: part_of UBERON:0002812 ! left cerebral hemisphere id: UBERON:0002805 name: right limbic lobe def: "A limbic lobe that is part of a right cerebral hemisphere." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: BIRNLEX:1781 xref: FMA:72980 is_a: UBERON:0002600 ! limbic lobe @@ -220127,6 +223662,8 @@ relationship: part_of UBERON:0002813 ! right cerebral hemisphere id: UBERON:0002806 name: left occipital lobe def: "An occipital lobe that is part of a left cerebral hemisphere." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: BIRNLEX:1782 xref: FMA:72976 xref: SCTID:314150007 @@ -220142,6 +223679,8 @@ relationship: part_of UBERON:0002812 ! left cerebral hemisphere id: UBERON:0002807 name: right occipital lobe def: "An occipital lobe that is part of a right cerebral hemisphere." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: BIRNLEX:1783 xref: FMA:72975 xref: SCTID:314149007 @@ -220156,6 +223695,8 @@ relationship: part_of UBERON:0002813 ! right cerebral hemisphere id: UBERON:0002808 name: left temporal lobe def: "A temporal lobe that is part of a left cerebral hemisphere." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: BIRNLEX:1784 xref: FMA:72972 xref: SCTID:314158000 @@ -220169,6 +223710,8 @@ relationship: part_of UBERON:0002812 ! left cerebral hemisphere id: UBERON:0002809 name: right temporal lobe def: "A temporal lobe that is part of a right cerebral hemisphere." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: BIRNLEX:1785 xref: FMA:72971 xref: SCTID:314157005 @@ -220182,6 +223725,8 @@ relationship: part_of UBERON:0002813 ! right cerebral hemisphere id: UBERON:0002810 name: right frontal lobe def: "A frontal cortex that is part of a right cerebral hemisphere." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: BIRNLEX:1786 xref: FMA:72969 xref: SCTID:314141005 @@ -220196,6 +223741,8 @@ relationship: part_of UBERON:0002813 ! right cerebral hemisphere id: UBERON:0002811 name: left frontal lobe def: "A frontal cortex that is part of a left cerebral hemisphere." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: BIRNLEX:1787 xref: FMA:72970 xref: SCTID:314142003 @@ -220211,6 +223758,8 @@ relationship: part_of UBERON:0002812 ! left cerebral hemisphere id: UBERON:0002812 name: left cerebral hemisphere def: "A cerebral hemisphere that is in the left side of a brain." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left hemisphere" EXACT [BIRNLEX:1795] xref: BIRNLEX:1795 xref: FMA:61819 @@ -220229,6 +223778,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0002813 name: right cerebral hemisphere def: "A cerebral hemisphere that is in the right side of a brain." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "right hemisphere" EXACT [BIRNLEX:1797] xref: BIRNLEX:1797 xref: FMA:67292 @@ -220246,6 +223797,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero [Term] id: UBERON:0002814 name: posterior superior fissure of cerebellum +subset: human_subset +subset: mouse_subset synonym: "fissura post clivalis" EXACT OMO:0003011 [FMA:83733, FMA:TA] synonym: "post-clival fissure" EXACT [FMA:83733] synonym: "postclival fissure" EXACT [FMA:83733] @@ -220269,6 +223822,8 @@ relationship: part_of UBERON:0002037 ! cerebellum id: UBERON:0002815 name: horizontal fissure of cerebellum def: "Fissure between cerebellar hemispheric lobules VIIA and VIIBi." [NLXANAT:20081255] +subset: human_subset +subset: mouse_subset synonym: "fissura horizontalis" RELATED OMO:0003011 [Wikipedia:Horizontal_fissure_of_cerebellum] synonym: "fissura horizontalis cerebelli" EXACT OMO:0003011 [FMA:75135, FMA:TA] synonym: "fissura intercruralis" EXACT OMO:0003011 [FMA:75135, FMA:TA] @@ -220294,6 +223849,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8d/Gr id: UBERON:0002816 name: prepyramidal fissure of cerebellum def: "Fissure between cerebellar lobules VIIBii and VIII." [NLXANAT:20081257] +subset: human_subset +subset: mouse_subset synonym: "fissura inferior anterior" EXACT OMO:0003011 [FMA:75138, FMA:TA] synonym: "fissura parafloccularis" EXACT OMO:0003011 [FMA:75138, FMA:TA] synonym: "fissura praepyramidalis" EXACT OMO:0003011 [FMA:75138, FMA:TA] @@ -220319,6 +223876,8 @@ relationship: part_of UBERON:0002037 ! cerebellum id: UBERON:0002817 name: secondary fissure of cerebellum def: "Fissure between cerebellar lobules VIII and IX." [NLXANAT:20081258] +subset: human_subset +subset: mouse_subset synonym: "fissura postpyramidalis cerebelli" EXACT OMO:0003011 [FMA:84043, FMA:TA] synonym: "post-pyramidal fissure of cerebellum" EXACT [FMA:84043] synonym: "postpyramidal fissure" EXACT [FMA:84043] @@ -220342,6 +223901,8 @@ relationship: part_of UBERON:0002037 ! cerebellum id: UBERON:0002818 name: posterolateral fissure of cerebellum def: "Fissure between cerebellar lobules IX and X." [NLXANAT:20081259] +subset: human_subset +subset: mouse_subset synonym: "dorsolateral fissure of cerebellum" EXACT [FMA:83730] synonym: "posterolateral fissure" BROAD [] synonym: "posterolateral fissure of cerebellum" EXACT [FMA:83730] @@ -220364,6 +223925,8 @@ relationship: part_of UBERON:0002037 ! cerebellum id: UBERON:0002819 name: apex of cochlea def: "The cupula is a structure in the vestibular system, sensing proprioception. The cupula is located within the ampullae of each of the three semicircular canals. As fluid rushes by the cupula, hair cells within it sense rotational acceleration, and transmit the corresponding signal to the brain through the vestibulocochlear nerve (CN VIII) In their natural orientation within the head, the cupulae are located on the medial aspect of the semicircular canals. In this orientation, the kinocilia rest on the posterior aspect of the cupula. [WP,unvetted]." [Wikipedia:Apex_of_cochlea] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "apex of cochlear canal" EXACT [BIRNLEX:2555] synonym: "apex of the cochlear canal" EXACT [BIRNLEX:2555] @@ -220391,6 +223954,8 @@ name: zona arcuata of basilar membrane of cochlea alt_id: UBERON:0002821 alt_id: UBERON:0031464 def: "The inner part of the basilar membrane of the cochlea that supports the spiral organ of Corti." [https://github.com/obophenotype/uberon/issues/1357, Wikipedia:Inner_tunnel] +subset: human_subset +subset: mouse_subset synonym: "arcuate zone of basilar membrane" EXACT [] synonym: "arcuate zone of organ of corti" EXACT [] synonym: "basilar membrane of cochlea, zona arcuata" EXACT [] @@ -220408,6 +223973,8 @@ relationship: part_of UBERON:0002226 ! basilar membrane of cochlea id: UBERON:0002822 name: macula lutea proper def: "The part of the macula lutea that excludes the fovea." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: BIRNLEX:2542 xref: FMA:58671 xref: UMLS:C0934637 {source="BIRNLEX:2542"} @@ -220420,6 +223987,8 @@ property_value: editor_note "consider obsoletion" xsd:string id: UBERON:0002823 name: clivus of fovea centralis comment: NIF differs from FMA +subset: human_subset +subset: mouse_subset synonym: "clivus of macula lutea" EXACT [BIRNLEX:2544] synonym: "fovea centralis clivus" EXACT [FMA:58674] xref: BIRNLEX:2544 @@ -220434,6 +224003,8 @@ id: UBERON:0002824 name: vestibular ganglion def: "The ganglion of the vestibular nerve. It contains the cell bodies of the bipolar primary afferent neurons whose peripheral processes form synaptic contact with hair cells of the vestibular sensory end organs[WP,unvetted]. Distributed to the maculae of the utricle and saccule and to the ampullary crests of the semicircular ducts. The vestibular fibers arise in bipolar cells in the vestibular ganglion in the internal acoustic meatus." [http://www.dartmouth.edu/~humananatomy/part_8/chapter_44.html, Wikipedia:Scarpa%27s_ganglion] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "nucleus nervi oculomotorii, pars medialis" RELATED OMO:0003011 [NeuroNames:495] @@ -220469,6 +224040,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002825 name: superior part of vestibular ganglion def: "The part of the vestibular ganglion that receives fibers from the maculae of the utricle and the sacculae and the ampullae of the anterior and lateral semicircular ducts." [ISBN:0-683-40008-8, MP:0000028] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "pars superior ganglionis vestibularis" EXACT OMO:0003011 [FMA:77531, FMA:TA] synonym: "pars superior vestibularis" RELATED [MA:0002778] @@ -220485,6 +224058,8 @@ relationship: part_of UBERON:0002824 ! vestibular ganglion [Term] id: UBERON:0002826 name: inferior part of vestibular ganglion +subset: human_subset +subset: mouse_subset synonym: "pars inferior ganglionis vestibularis" EXACT OMO:0003011 [FMA:77532, FMA:TA] synonym: "vestibular ganglion inferior part" EXACT [MA:0002779] xref: BIRNLEX:2552 @@ -220500,6 +224075,8 @@ id: UBERON:0002827 name: vestibulocochlear ganglion def: "The group of neuron cell bodies associated with the eighth cranial nerve during embryogenesis; splits in later development to form the cochlear and vestibular ganglia." [MGI:smb, MP:0003703] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "acoustic ganglion" RELATED [VHOG:0000696] @@ -220547,6 +224124,8 @@ property_value: terminology_notes "The cell bodies of the cochlear nerve lie wit id: UBERON:0002828 name: ventral cochlear nucleus def: "The ventral cochlear nucleus (or anterior, or accessory), placed between the two divisions of the cochlear nerve, is on the ventral aspect of the inferior peduncle. Composed of several regions of distinct cell types, this nucleus serves primarily as a relay station for ascending auditory information. Bushy cells in the anterior ventral cochlear nucleus (AVCN), which receive end bulbs of held from auditory nerve fibers, project to the superior olivary complex through the trapezoid body and intermediate acoustic stria. Other cell types project to the lateral lemniscus and the inferior colliculus directly. [WP,unvetted]." [Wikipedia:Ventral_cochlear_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "accessory cochlear nucleus" RELATED [NeuroNames:722] synonym: "anterior cochlear nucleus" EXACT [FMA:54621] @@ -220580,6 +224159,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bb/Gr id: UBERON:0002829 name: dorsal cochlear nucleus def: "The dorsal cochlear nucleus (DCN, also known as the 'tuberculum acousticum'), is a cortex-like structure on the dorso-lateral surface of the brainstem. Along with the ventral cochlear nucleus, it forms the cochlear nucleus, where all auditory nerve fibers from the cochlea form their first synapses. [WP,unvetted]." [Wikipedia:Dorsal_cochlear_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "DCo" BROAD OMO:0003000 [BIRNLEX:2569, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal cochlear nucleus" EXACT [FMA:54624] @@ -220612,6 +224193,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bb/Gr [Term] id: UBERON:0002830 name: anteroventral cochlear nucleus +subset: human_subset +subset: mouse_subset synonym: "anterior part of anterior cochlear nucleus" EXACT [BIRNLEX:2572] synonym: "anterior part of the ventral cochlear nucleus" RELATED [NeuroNames:723] synonym: "anterior ventral cochlear nucleus" RELATED [NeuroNames:723] @@ -220635,6 +224218,8 @@ relationship: part_of UBERON:0002828 {source="NIFSTD"} ! ventral cochlear nucleu [Term] id: UBERON:0002831 name: posteroventral cochlear nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus cochlearis posteroventralis" RELATED OMO:0003011 [NeuroNames:724] synonym: "posterior part of anterior cochlear nucleus" EXACT [BIRNLEX:2573] synonym: "posterior part of the ventral cochlear nucleus" RELATED [NeuroNames:724] @@ -220656,6 +224241,8 @@ relationship: part_of UBERON:0002828 {source="NIFSTD"} ! ventral cochlear nucleu id: UBERON:0002832 name: ventral nucleus of trapezoid body def: "A small nucleus of the periolivary complex located laterally to the MNTB, and ventral to the MSO." [Wikipedia:Superior_olivary_complex#Ventral_nucleus_of_the_trapezoid_body_.28VNTB.29] +subset: human_subset +subset: mouse_subset synonym: "anterior nucleus of trapezoid body" EXACT [FMA:72477] synonym: "nucleus anterior corporis trapezoidei" EXACT OMO:0003011 [FMA:72477, FMA:TA] synonym: "nucleus ventralis corporis trapezoidei" EXACT OMO:0003011 [NeuroNames:1283] @@ -220677,6 +224264,8 @@ relationship: ventral_to UBERON:0002782 ! medial superior olivary nucleus id: UBERON:0002833 name: medial nucleus of trapezoid body def: "Nucleus in the pontine tegmentum of most mammals that receives projections from the ventral cochlear nucleus via the large specialized synapse, the Calyx of Held. It is not clear whether a well defined nucleus is present in humans, although humans may possess scattered cells with similar input." [BIRNLEX:2595] +subset: human_subset +subset: mouse_subset synonym: "MNTB" EXACT OMO:0003000 [] xref: BIRNLEX:2595 xref: DHBA:12460 @@ -220689,6 +224278,8 @@ relationship: part_of UBERON:0022434 {source="Wikipedia"} ! primary superior oli id: UBERON:0002834 name: cervical dorsal root ganglion subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cervical dorsal root ganglion" EXACT [FMA:6005] synonym: "cervical spinal ganglion" EXACT [FMA:6005] xref: BIRNLEX:2599 @@ -220706,6 +224297,8 @@ id: UBERON:0002835 name: thoracic dorsal root ganglion def: "A dorsal root ganglion that is part of a thorax [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "dorsal root ganglion of thorax" EXACT [OBOL:automatic] synonym: "ganglion of dorsal root of thorax" EXACT [OBOL:automatic] synonym: "ganglion spinalis of thorax" EXACT [OBOL:automatic] @@ -220730,6 +224323,8 @@ id: UBERON:0002836 name: lumbar dorsal root ganglion def: "The group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the lumbar vertebrae." [MP:0006404] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lumbar dorsal root ganglion" EXACT [FMA:6007] synonym: "lumbar spinal ganglion" EXACT [FMA:6007] @@ -220747,6 +224342,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002837 name: sacral dorsal root ganglion subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "sacral dorsal root ganglion" EXACT [FMA:6008] synonym: "sacral spinal ganglion" EXACT [FMA:6008] xref: BIRNLEX:2602 @@ -220764,6 +224361,8 @@ id: UBERON:0002838 name: first cervical dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "first cervical dorsal root ganglion" EXACT [FMA:6010] synonym: "first cervical spinal ganglion" EXACT [FMA:6010] xref: BIRNLEX:2603 @@ -220778,6 +224377,8 @@ id: UBERON:0002839 name: second cervical dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "C2 dorsal root ganglion" EXACT [EMAPA:25155] synonym: "second cervical dorsal root ganglion" EXACT [FMA:6315] synonym: "second cervical spinal ganglion" EXACT [FMA:6315] @@ -220793,6 +224394,8 @@ id: UBERON:0002840 name: third cervical dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "C3 dorsal root ganglion" EXACT [EMAPA:25156] synonym: "third cervical dorsal root ganglion" EXACT [FMA:6316] synonym: "third cervical spinal ganglion" EXACT [FMA:6316] @@ -220808,6 +224411,8 @@ id: UBERON:0002841 name: fourth cervical dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "C4 dorsal root ganglion" EXACT [EMAPA:25157] synonym: "fourth cervical dorsal root ganglion" EXACT [FMA:6317] synonym: "fourth cervical spinal ganglion" EXACT [FMA:6317] @@ -220823,6 +224428,8 @@ id: UBERON:0002842 name: fifth cervical dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "C5 dorsal root ganglion" EXACT [EMAPA:25158] synonym: "fifth cervical dorsal root ganglion" EXACT [FMA:6318] synonym: "fifth cervical spinal ganglion" EXACT [FMA:6318] @@ -220838,6 +224445,8 @@ id: UBERON:0002843 name: seventh cervical dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "C7 dorsal root ganglion" EXACT [EMAPA:25160] synonym: "seventh cervical dorsal root ganglion" EXACT [FMA:6360] synonym: "seventh cervical spinal ganglion" EXACT [FMA:6360] @@ -220853,6 +224462,8 @@ id: UBERON:0002844 name: eighth cervical dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "eighth cervical dorsal root ganglion" EXACT [FMA:6361] synonym: "eighth cervical spinal ganglion" EXACT [FMA:6361] xref: BIRNLEX:2610 @@ -220866,6 +224477,8 @@ id: UBERON:0002845 name: first thoracic dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "first thoracic dorsal root ganglion" EXACT [FMA:6321] synonym: "first thoracic spinal ganglion" EXACT [FMA:6321] xref: BIRNLEX:2611 @@ -220880,6 +224493,8 @@ id: UBERON:0002846 name: second thoracic dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "second thoracic dorsal root ganglion" EXACT [FMA:6322] synonym: "second thoracic spinal ganglion" EXACT [FMA:6322] xref: BIRNLEX:2612 @@ -220894,6 +224509,8 @@ id: UBERON:0002847 name: third thoracic dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "third thoracic dorsal root ganglion" EXACT [FMA:6323] synonym: "third thoracic spinal ganglion" EXACT [FMA:6323] xref: BIRNLEX:2613 @@ -220908,6 +224525,8 @@ id: UBERON:0002848 name: fifth thoracic dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "fifth thoracic dorsal root ganglion" EXACT [FMA:6325] synonym: "fifth thoracic spinal ganglion" EXACT [FMA:6325] xref: BIRNLEX:2615 @@ -220922,6 +224541,8 @@ id: UBERON:0002849 name: sixth thoracic dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "sixth thoracic dorsal root ganglion" EXACT [FMA:6326] synonym: "sixth thoracic spinal ganglion" EXACT [FMA:6326] xref: BIRNLEX:2616 @@ -220936,6 +224557,8 @@ id: UBERON:0002850 name: seventh thoracic dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "seventh thoracic dorsal root ganglion" EXACT [FMA:6327] synonym: "seventh thoracic spinal ganglion" EXACT [FMA:6327] xref: BIRNLEX:2617 @@ -220950,6 +224573,8 @@ id: UBERON:0002851 name: eighth thoracic dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "eighth thoracic dorsal root ganglion" EXACT [FMA:6328] synonym: "eighth thoracic spinal ganglion" EXACT [FMA:6328] xref: BIRNLEX:2618 @@ -220964,6 +224589,8 @@ id: UBERON:0002852 name: ninth thoracic dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ninth thoracic dorsal root ganglion" EXACT [FMA:6329] synonym: "ninth thoracic spinal ganglion" EXACT [FMA:6329] xref: BIRNLEX:2619 @@ -220978,6 +224605,8 @@ id: UBERON:0002853 name: tenth thoracic dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "tenth thoracic dorsal root ganglion" EXACT [FMA:6330] synonym: "tenth thoracic spinal ganglion" EXACT [FMA:6330] xref: BIRNLEX:2620 @@ -220992,6 +224621,8 @@ id: UBERON:0002854 name: eleventh thoracic dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "eleventh thoracic dorsal root ganglion" EXACT [FMA:6331] synonym: "eleventh thoracic spinal ganglion" EXACT [FMA:6331] xref: BIRNLEX:2621 @@ -221006,6 +224637,8 @@ id: UBERON:0002855 name: twelfth thoracic dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "twelfth thoracic dorsal root ganglion" EXACT [FMA:6332] synonym: "twelfth thoracic spinal ganglion" EXACT [FMA:6332] xref: BIRNLEX:2622 @@ -221020,6 +224653,8 @@ id: UBERON:0002856 name: second lumbar dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "second lumbar dorsal root ganglion" EXACT [FMA:6336] synonym: "second lumbar spinal ganglion" EXACT [FMA:6336] xref: BIRNLEX:2623 @@ -221034,6 +224669,8 @@ id: UBERON:0002857 name: first lumbar dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "first lumbar dorsal root ganglion" EXACT [FMA:6335] synonym: "first lumbar spinal ganglion" EXACT [FMA:6335] xref: BIRNLEX:2624 @@ -221048,6 +224685,8 @@ id: UBERON:0002858 name: third lumbar dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "third lumbar dorsal root ganglion" EXACT [FMA:6337] synonym: "third lumbar spinal ganglion" EXACT [FMA:6337] xref: BIRNLEX:2625 @@ -221064,6 +224703,8 @@ alt_id: UBERON:0003944 def: "The group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fifth lumbar vertebra." [MP:0001022] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fifth lumbar dorsal root ganglion" EXACT [FMA:6339] synonym: "fifth lumbar spinal ganglion" EXACT [FMA:6339] @@ -221081,6 +224722,8 @@ id: UBERON:0002860 name: first sacral dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "first sacral dorsal root ganglion" EXACT [FMA:6342] synonym: "first sacral spinal ganglion" EXACT [FMA:6342] xref: BIRNLEX:2628 @@ -221095,6 +224738,8 @@ id: UBERON:0002861 name: second sacral dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "second sacral dorsal root ganglion" EXACT [FMA:6343] synonym: "second sacral spinal ganglion" EXACT [FMA:6343] xref: BIRNLEX:2629 @@ -221109,6 +224754,8 @@ id: UBERON:0002862 name: third sacral dorsal root ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "third sacral dorsal root ganglion" EXACT [FMA:6344] synonym: "third sacral spinal ganglion" EXACT [FMA:6344] xref: BIRNLEX:2630 @@ -221122,6 +224769,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002863 name: fifth sacral dorsal root ganglion subset: defined_by_ordinal_series +subset: human_subset +subset: mouse_subset synonym: "fifth sacral dorsal root ganglion" EXACT [FMA:6346] synonym: "fifth sacral spinal ganglion" EXACT [FMA:6346] xref: BIRNLEX:2632 @@ -221133,6 +224782,8 @@ is_a: UBERON:0002837 ! sacral dorsal root ganglion id: UBERON:0002864 name: accessory cuneate nucleus def: "The accessory cuneate nucleus is located lateral to the cuneate nucleus in the medulla oblongata at the level of the sensory decussation. It receives input from cervical spinal nerves and transmits that information to the cerebellum. These fibers are called cuneocerebellar fibers. In this function, the accessory cuneate nucleus is comparable to the upper extremity portion of the posterior spinocerebellar tract. [WP,unvetted]." [Wikipedia:Accessory_cuneate_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "ACu" BROAD OMO:0003000 [BIRNLEX:2634, NIFSTD:NeuroNames_abbrevSource] synonym: "external cuneate nucleus" EXACT [FMA:72603] @@ -221174,6 +224825,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/94/Gr [Term] id: UBERON:0002865 name: arcuate nucleus of medulla +subset: human_subset +subset: mouse_subset synonym: "ArcM" BROAD OMO:0003000 [BIRNLEX:2635, NIFSTD:NeuroNames_abbrevSource] synonym: "arcuate hypothalamic nucleus medial part" RELATED [BAMS:ArcM] synonym: "arcuate hypothalamic nucleus of medulla" EXACT [OBOL:automatic] @@ -221213,6 +224866,8 @@ relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002866 name: caudal part of spinal trigeminal nucleus +subset: human_subset +subset: mouse_subset synonym: "caudal nucleus" EXACT [BIRNLEX:2637] synonym: "caudal nucleus (kandell)" EXACT [] synonym: "caudal part of the spinal trigeminal nucleus" RELATED [NeuroNames:771] @@ -221248,6 +224903,8 @@ relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve [Term] id: UBERON:0002867 name: central gray substance of medulla +subset: human_subset +subset: mouse_subset synonym: "central gray matter" EXACT [BIRNLEX:2638] synonym: "central gray of the medulla" RELATED [NeuroNames:756] synonym: "central gray substance of the medulla" RELATED [NeuroNames:756] @@ -221270,6 +224927,8 @@ relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata [Term] id: UBERON:0002868 name: commissural nucleus of vagus nerve +subset: human_subset +subset: mouse_subset synonym: "Cm10" BROAD OMO:0003000 [BIRNLEX:2639, NIFSTD:NeuroNames_abbrevSource] synonym: "commissural nucleus of the vagus nerve" RELATED [NeuroNames:754] synonym: "commissural nucleus-1" EXACT [FMA:54597] @@ -221289,6 +224948,8 @@ relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata [Term] id: UBERON:0002869 name: diffuse reticular nucleus +subset: human_subset +subset: mouse_subset synonym: "DRt" BROAD OMO:0003000 [BIRNLEX:2641, NIFSTD:NeuroNames_abbrevSource] synonym: "Koelliker-Fuse nucleus" EXACT [] synonym: "Kolliker-Fuse nucleus" RELATED [BAMS:KF] @@ -221320,6 +224981,8 @@ relationship: part_of UBERON:0000988 {source="NIFSTD"} ! pons id: UBERON:0002870 name: dorsal motor nucleus of vagus nerve def: "A cranial nerve nucleus for the vagus nerve in the medulla that lies under the floor of the fourth ventricle. It mostly serves parasympathetic vagal functions in the gastrointestinal tract, lungs, and other thoracic and abdominal vagal innervations. The cell bodies for the preganglionic parasympathetic vagal neurons that innervate the heart reside in the nucleus ambiguus.[WP,unvetted]." [Wikipedia:Dorsal_nucleus_of_vagus_nerve] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "dorsal efferent nucleus of vagus" EXACT [FMA:54592] synonym: "dorsal motor nucleus" RELATED [NeuroNames:755] @@ -221382,6 +225045,8 @@ property_value: external_ontology_notes "The FMA includes a separate sensoryt nu id: UBERON:0002871 name: hypoglossal nucleus def: "Nucleus forming a longitudinal cell column in the medulla, close beneath the floor of the 4th ventricle, containing motor neurons that innervate the muscles of the tongue (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 453)." [BIRNLEX:2644] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "hypoglossal nerve nucleus" EXACT [FMA:54505] @@ -221433,6 +225098,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/94/Gr id: UBERON:0002872 name: inferior salivatory nucleus def: "In the brain, the inferior salivatory nucleus is a cluster of neurons controlling the parasympathetic input to the parotid gland. It is one of the components of the glossopharyngeal nerve. [WP,unvetted]." [Wikipedia:Inferior_salivatory_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "inferior salivary nucleus" EXACT [GO:0021752] synonym: "inferior salivatary nucleus" EXACT [] @@ -221472,6 +225139,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a0/Gr [Term] id: UBERON:0002873 name: interpolar part of spinal trigeminal nucleus +subset: human_subset +subset: mouse_subset synonym: "interpolar part of the spinal trigeminal nucleus" RELATED [NeuroNames:817] synonym: "nucleus interpolaris tractus spinalis nervi trigemini" RELATED OMO:0003011 [NeuroNames:817] synonym: "nucleus of spinal tract of N. V (subnucleus interpolaris)" RELATED [NeuroNames:817] @@ -221503,6 +225172,8 @@ relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve [Term] id: UBERON:0002874 name: lateral pericuneate nucleus +subset: human_subset +subset: mouse_subset synonym: "LPCu" BROAD OMO:0003000 [BIRNLEX:2647, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus pericuneatus lateralis" RELATED OMO:0003011 [NeuroNames:769] xref: BAMS:LPCu @@ -221519,6 +225190,8 @@ relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata [Term] id: UBERON:0002875 name: medial pericuneate nucleus +subset: human_subset +subset: mouse_subset synonym: "MPCu" BROAD OMO:0003000 [BIRNLEX:2648, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus pericuneatus medialis" RELATED OMO:0003011 [NeuroNames:770] xref: BAMS:MPCu @@ -221536,6 +225209,8 @@ id: UBERON:0002876 name: nucleus intercalatus alt_id: UBERON:0002878 comment: two NIF classes with the same name +subset: human_subset +subset: mouse_subset synonym: "In" BROAD OMO:0003000 [BIRNLEX:2654, NIFSTD:NeuroNames_abbrevSource] synonym: "intercalated nucleus of medulla" EXACT [FMA:72597] synonym: "intercalated nucleus of the medulla" RELATED [NeuroNames:759] @@ -221564,6 +225239,8 @@ relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata [Term] id: UBERON:0002877 name: parasolitary nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus fasciculus solitarius" EXACT [BIRNLEX:2653] synonym: "nucleus juxtasolitarius" EXACT [BIRNLEX:2653] synonym: "PSol" BROAD OMO:0003000 [BIRNLEX:2653, NIFSTD:NeuroNames_abbrevSource] @@ -221590,6 +225267,8 @@ relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata [Term] id: UBERON:0002879 name: peritrigeminal nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus peritrigeminalis" RELATED OMO:0003011 [NeuroNames:762] synonym: "Pe5" BROAD OMO:0003000 [BIRNLEX:2655, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:Pe5 @@ -221605,6 +225284,8 @@ relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata [Term] id: UBERON:0002880 name: pontobulbar nucleus +subset: human_subset +subset: mouse_subset synonym: "corpus pontobulbare" RELATED OMO:0003011 [NeuroNames:774] synonym: "nucleus of circumolivary bundle" EXACT [FMA:72608] synonym: "nucleus pontobulbaris" RELATED OMO:0003011 [NeuroNames:774] @@ -221624,6 +225305,8 @@ relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata id: UBERON:0002881 name: sublingual nucleus def: "In the substance of the formatio reticularis are two small nuclei of gray matter. The one near the dorsal aspect of the hilus of the inferior olivary nucleus is called the Sublingual nucleus (inferior central nucleus, nucleus of Roller.) [WP,unvetted]." [Wikipedia:Sublingual_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "inferior central nucleus" RELATED INCONSISTENT [Wikipedia:Sublingual_nucleus] synonym: "nucleus of roller" EXACT [FMA:68574] @@ -221652,6 +225335,8 @@ relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata [Term] id: UBERON:0002882 name: supraspinal nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus substantiae grisea ventralis" RELATED OMO:0003011 [NeuroNames:776] synonym: "nucleus substantiae griseae ventralis" RELATED OMO:0003011 [NeuroNames:776] synonym: "nucleus supraspinalis" RELATED OMO:0003011 [NeuroNames:776] @@ -221672,6 +225357,8 @@ id: UBERON:0002883 name: central amygdaloid nucleus def: "The output region of the amygdala responsible for controlling responses (Phelps & LeDoux, 2005, http://www.ncbi.nlm.nih.gov/pubmed/ 16242399)." [BIRNLEX:2682] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "amygdala central nucleus" RELATED [BTO:0002686] synonym: "central amygdala" EXACT [XAO:0004542] synonym: "central amygdala" RELATED [] @@ -221711,6 +225398,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002884 name: intercalated amygdaloid nuclei def: "Discrete clusters of cells intercalated among the major amygdaloid nuclei. They stain darkly in Nissl stains and have been identified in all mammals. The main groups lie between the lateral-basolateral nuclear coplex and the central and medial nuclei. Additional cell groups have been described by some in other locations (Millhouse, O. E. The intercalated cells of the amygdala. J Comp Neurol 247: 246-271, 1986)., Groups of cells located between the lateral basolateral amygaloid nuclear complex and the central nucleus of the amygdala. They stain darkly in Nissl stains and have been identified in all mammals. (Millhouse, O. E. The intercalated cells of the amygdala. J Comp Neurol 247: 246-271, 1986)." [BIRNLEX:2683] +subset: human_subset +subset: mouse_subset synonym: "intercalated amygdalar nuclei" RELATED [NeuroNames:250] synonym: "intercalated amygdalar nucleus" RELATED [BAMS:IA] synonym: "intercalated amygdaloid nuclei" EXACT [FMA:61868] @@ -221745,6 +225434,8 @@ relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002885 name: accessory basal amygdaloid nucleus +subset: human_subset +subset: mouse_subset synonym: "accessory basal nucleus" RELATED [NeuroNames:249] synonym: "accessory basal nucleus of amygdala" EXACT [BIRNLEX:2686] synonym: "accessory basal nucleus of the amygdala" RELATED [NeuroNames:249] @@ -221775,6 +225466,8 @@ id: UBERON:0002886 name: lateral amygdaloid nucleus def: "The sensory interface of the amygdala where plasticity is mediated (Phelps & LeDoux, 2005, http://www.ncbi.nlm.nih.gov/pubmed/ 16242399)." [BIRNLEX:2687] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lateral amygdala" RELATED [] synonym: "lateral amygdalar nucleus" RELATED [NeuroNames:245] synonym: "lateral nucleus of amygdala" EXACT [FMA:61866] @@ -221809,6 +225502,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0002887 name: basal amygdaloid nucleus +subset: human_subset +subset: mouse_subset synonym: "basal nucleus of the amygdala" RELATED [NeuroNames:246] synonym: "basolateral amygaloid nucleus" EXACT [BIRNLEX:2692] synonym: "basolateral amygdalar nucleus" EXACT [BIRNLEX:2692] @@ -221841,6 +225536,8 @@ relationship: part_of UBERON:0006107 {source="NIFSTD"} ! basolateral amygdaloid [Term] id: UBERON:0002888 name: lateral part of basal amygdaloid nucleus +subset: human_subset +subset: mouse_subset synonym: "lateral basal nucleus of amygdala" EXACT [BIRNLEX:2695] synonym: "lateral basal nucleus of the amygdala" EXACT [FMA:68857] synonym: "lateral division of basal nucleus" EXACT [BIRNLEX:2695] @@ -221863,6 +225560,8 @@ relationship: part_of UBERON:0002887 ! basal amygdaloid nucleus id: UBERON:0002889 name: medial part of basal amygdaloid nucleus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "basomedial amygdalar nucleus" EXACT [ABA:BMA] synonym: "basomedial amygdaloid nucleus" EXACT [FMA:68858, MA:0002922] synonym: "basomedial amygdaloid nucleus anterior part" RELATED [BAMS:BMA] @@ -221895,6 +225594,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002890 name: anterior amygdaloid area subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "anterior amygaloid area" EXACT [BIRNLEX:2698] synonym: "anterior amygdalar area" EXACT [BIRNLEX:2698] synonym: "anterior cortical nucleus" RELATED [BIRNLEX:2698] @@ -221925,6 +225626,8 @@ id: UBERON:0002891 name: cortical amygdaloid nucleus def: "Three layered structure that is located in the caudal aspect of the amygdala bordering the periamygdaloid cortex laterally." [BIRNLEX:2700] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cortex periamygdaloideus" RELATED OMO:0003011 [NeuroNames:240] synonym: "cortical amygdala" RELATED [] synonym: "cortical amygdalar area" RELATED [NeuroNames:240] @@ -221959,6 +225662,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002892 name: medial amygdaloid nucleus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "medial amygalar nucleus" EXACT [BIRNLEX:2701] synonym: "medial amygdala" RELATED [] synonym: "medial amygdalar nucleus" RELATED [NeuroNames:241] @@ -221989,6 +225694,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002893 name: nucleus of lateral olfactory tract comment: part of amygdala in FMA but this leads to inconsistency when combined with ABA partitions +subset: human_subset +subset: mouse_subset synonym: "lateral olfactory tract nucleus" EXACT [FMA:61865] synonym: "NLOT" EXACT OMO:0003000 [] synonym: "nucleus of the lateral olfactory tract" RELATED [NeuroNames:242] @@ -222023,6 +225730,8 @@ relationship: part_of UBERON:0002894 ! olfactory cortex id: UBERON:0002894 name: olfactory cortex def: "Aggregate brain region defined as those areas of cerebral cortex receiving direct synaptic input from the olfactory bulb (Price, 1973). It usually includes the piriform cortex and sometimes other areas." [BIRNLEX:2707] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "archaeocortex" RELATED [BTO:0001446] @@ -222056,6 +225765,8 @@ property_value: homology_notes "(In mammals) Odorant detection is mediated by mi id: UBERON:0002895 name: secondary olfactory cortex def: "Brodmann's area 28; major gateway for neocortical input to the hippocampus; origin of the perforant pathway; a component of the medial temporal lobe memory system. (CSP) * The cytoarchitecturally well-defined area of multilaminate cerebral cortex on the medial aspect of the parahippocampal gyrus, immediately caudal to the olfactory cortex of the uncus. The entorhinal cortex is the origin of the major neural fiber system afferent to the hippocampus, the so-called PERFORANT PATHWAY. (Stedman, 25th ed)." [BIRNLEX:2709] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "entorhinal cortex" RELATED INCONSISTENT [FMA:72356] synonym: "secondary olfactory areas" EXACT [BIRNLEX:2709] @@ -222075,6 +225786,8 @@ property_value: external_ontology_notes "FMA considers this a syn of entorhinal [Term] id: UBERON:0002896 name: telodiencephalic fissure +subset: human_subset +subset: mouse_subset synonym: "fissura telo-diencephalica" RELATED OMO:0003011 [NeuroNames:28] synonym: "TDF" BROAD OMO:0003000 [BIRNLEX:4001, NIFSTD:NeuroNames_abbrevSource] synonym: "telo-diencephalic fissure" EXACT [FMA:83726] @@ -222088,6 +225801,8 @@ is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure [Term] id: UBERON:0002897 name: cistern of lamina terminalis +subset: human_subset +subset: mouse_subset synonym: "CISLT" BROAD OMO:0003000 [BIRNLEX:4002, NIFSTD:NeuroNames_abbrevSource] synonym: "cistern of the lamina terminalis" RELATED [NeuroNames:29] synonym: "cisterna lamina terminalis" EXACT [BIRNLEX:4002] @@ -222106,6 +225821,8 @@ is_a: UBERON:0004050 ! subarachnoid cistern id: UBERON:0002898 name: chiasmatic cistern def: "The region of the subarachnoid space that is located below and anterior to the optic chiasm." [ISBN:0-683-40008-8, MP:0009028] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "CCIS" BROAD OMO:0003000 [BIRNLEX:4003, NIFSTD:NeuroNames_abbrevSource] @@ -222127,6 +225844,8 @@ is_a: UBERON:0004050 ! subarachnoid cistern id: UBERON:0002899 name: hippocampal sulcus def: "The hippocampal sulcus, also known as the hippocampal fissure, is a sulcus that separates the dentate gyrus from the subiculum and the CA1 field in the hippocampus. [WP,unvetted]." [Wikipedia:Hippocampal_sulcus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "dentate fissure" EXACT [FMA:83747] synonym: "hippocampal fissure" EXACT [FMA:83747] @@ -222163,6 +225882,8 @@ property_value: external_ontology_notes "two classes in ncit (in general ncit di id: UBERON:0002900 name: transverse occipital sulcus def: "The transverse occipital sulcus is a structure in the occipital lobe. The transverse occipital sulcus is continuous with the posterior end of the occipital ramus of the intraparietal sulcus, and runs across the upper part of the lobe, a short distance behind the parietoC6ccipital fissure." [Wikipedia:Transverse_occipital_sulcus] +subset: human_subset +subset: mouse_subset synonym: "sulcus occipitalis transversus" EXACT [BIRNLEX:4013] synonym: "TOCS" BROAD OMO:0003000 [BIRNLEX:4013, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:tocs @@ -222180,6 +225901,8 @@ relationship: part_of UBERON:0002021 {source="NIFSTD"} ! occipital lobe [Term] id: UBERON:0002901 name: posterior calcarine sulcus +subset: human_subset +subset: mouse_subset synonym: "PCCS" BROAD OMO:0003000 [BIRNLEX:4015, NIFSTD:NeuroNames_abbrevSource] synonym: "postcalcarine sulcus" EXACT [FMA:83787] synonym: "posterior calcarine fissure" EXACT [FMA:83787] @@ -222199,6 +225922,8 @@ id: UBERON:0002902 name: occipital pole def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [WP,unvetted]." [Wikipedia:Occipital_pole] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "OCP" BROAD OMO:0003000 [BIRNLEX:4016, NIFSTD:NeuroNames_abbrevSource] synonym: "polus occipitalis" EXACT OMO:0003011 [BIRNLEX:4016] @@ -222228,6 +225953,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0002903 name: lunate sulcus def: "The lunate sulcus is a structure in the occipital lobe. It is not present in all individuals." [Wikipedia:Lunate_sulcus] +subset: human_subset +subset: mouse_subset synonym: "lunate fissure" EXACT [FMA:83788] synonym: "LUS" BROAD OMO:0003000 [BIRNLEX:4017, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus lunatus" EXACT [BIRNLEX:4017] @@ -222250,6 +225977,8 @@ relationship: part_of UBERON:0002021 {source="NIFSTD"} ! occipital lobe id: UBERON:0002904 name: lateral occipital sulcus def: "In the occipital lobe, the lateral occipital sulcus extends from behind forward, and divides the lateral surface of the occipital lobe into a superior and an inferior gyrus, which are continuous in front with the parietal and temporal lobes. [WP,unvetted]." [Wikipedia:Lateral_occipital_sulcus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "lateral occipital sulcus (H)" RELATED [NeuroNames:143] synonym: "LOCS" BROAD OMO:0003000 [BIRNLEX:4018, NIFSTD:NeuroNames_abbrevSource] @@ -222271,6 +226000,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2c/Gr id: UBERON:0002905 name: intralingual sulcus def: "A groove located within the boundaries of the lingual gyrus in the human. Identified by dissection, it is oriented parallel to the inferior margin of the occipital lobe ( Ono-1990; Duvernoy-1992 )." [neuronames:151] +subset: human_subset +subset: mouse_subset synonym: "ILS" BROAD OMO:0003000 [BIRNLEX:4019, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus intralingualis" EXACT [BIRNLEX:4019] xref: BAMS:ils @@ -222287,6 +226018,8 @@ property_value: taxon_notes "It is not found in the macaque or in the smooth cer [Term] id: UBERON:0002906 name: anterior occipital sulcus +subset: human_subset +subset: mouse_subset synonym: "AOCS" BROAD OMO:0003000 [BIRNLEX:4023, NIFSTD:NeuroNames_abbrevSource] synonym: "ascending limb of the inferior temporal sulcus" EXACT [BIRNLEX:4023] synonym: "posterior inferior temporal sulcus" EXACT [BIRNLEX:4023] @@ -222307,6 +226040,8 @@ relationship: part_of UBERON:0002021 {source="NIFSTD"} ! occipital lobe [Term] id: UBERON:0002907 name: superior postcentral sulcus +subset: human_subset +subset: mouse_subset synonym: "postcentral dimple" EXACT [FMA:83775] synonym: "postcentral sulcus (Peele)" RELATED [NeuroNames:100] synonym: "SPCS" BROAD OMO:0003000 [BIRNLEX:4025, NIFSTD:NeuroNames_abbrevSource] @@ -222322,6 +226057,8 @@ is_a: UBERON:0013118 ! sulcus of brain [Term] id: UBERON:0002908 name: subparietal sulcus +subset: human_subset +subset: mouse_subset synonym: "SBPS" BROAD OMO:0003000 [BIRNLEX:4026, NIFSTD:NeuroNames_abbrevSource] synonym: "splenial sulcus" EXACT [FMA:83777] synonym: "sulcus subparietalis" EXACT [BIRNLEX:4026] @@ -222340,6 +226077,8 @@ is_a: UBERON:0013118 ! sulcus of brain [Term] id: UBERON:0002909 name: posterior subcentral sulcus +subset: human_subset +subset: mouse_subset synonym: "PSCS" BROAD OMO:0003000 [BIRNLEX:4027, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus subcentralis posterior" EXACT [BIRNLEX:4027] xref: BAMS:pscs @@ -222353,6 +226092,8 @@ is_a: UBERON:0013118 ! sulcus of brain id: UBERON:0002910 name: posterior ascending limb of lateral sulcus def: "One of two branches of the lateral fissure at its posterior terminus identified by dissection in the human. The other is the terminal descending limb of the lateral fissure ( Ono-1990 ). It is not found in the macaque ( Martin-2000 ), the rat ( Swanson-2004 ) or the mouse ( Hof-2000 )." [NeuroNames:104] +subset: human_subset +subset: mouse_subset synonym: "ascending terminal ramus of sylvian fissure" EXACT [] synonym: "PALS" BROAD OMO:0003000 [BIRNLEX:4028, NIFSTD:NeuroNames_abbrevSource] synonym: "posterior ascending limb of lateral fissure" EXACT [FMA:83761] @@ -222375,6 +226116,8 @@ id: UBERON:0002911 name: parietal operculum def: "The parietal operculum, forming the superior bank of the sylvian fissure, as studied in the cat, contains the secondary somatosensory representation, 'S-II', and a second somatotopic representation (parietal ventral, or PV). Anatomically, primate S-II receives inputs from area 3 and area 1, and projects to PV and area 7. PV has projections to area 5 and premotor areas. [WP,unvetted]." [Wikipedia:Parietal_operculum] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "operculum parietale" EXACT OMO:0003011 [BIRNLEX:4029] synonym: "PAO" BROAD OMO:0003000 [BIRNLEX:4029, NIFSTD:NeuroNames_abbrevSource] @@ -222399,6 +226142,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0002912 name: marginal sulcus def: "The marginal sulcus is the portion of the cingulate sulcus adjacent to the paracentral lobule and the precuneus. It is sometimes known as the 'marginal part of the cingulate sulcus'. [WP,unvetted]." [Wikipedia:Marginal_sulcus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "marginal branch of cingulate sulcus" EXACT [FMA:83773] synonym: "marginal ramus of cingulate sulcus" EXACT [FMA:83773] @@ -222422,6 +226167,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d0/Gr id: UBERON:0002913 name: intraparietal sulcus def: "The intraparietal sulcus (IPS) is located on the lateral surface of the parietal lobe, and consists of an oblique and a horizontal portion. The IPS contains a series of functionally distinct subregions that have been intensively investigated using both single cell neurophysiology in primates and human functional neuroimaging. Its principal functions are related to perceptual-motor coordination (for directing eye movements and reaching) and visual attention. The IPS is also thought to play a role in other functions, including processing symbolic numerical information, visuospatial working memory and interpreting the intent of others. [WP,unvetted]." [Wikipedia:Intraparietal_sulcus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "interparietal fissure" EXACT [FMA:83772] synonym: "intraparietal fissure" EXACT [FMA:83772] @@ -222451,6 +226198,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2a/Gr [Term] id: UBERON:0002914 name: inferior postcentral sulcus +subset: human_subset +subset: mouse_subset synonym: "IPCS" BROAD OMO:0003000 [BIRNLEX:4032, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus postcentralis inferior" EXACT [BIRNLEX:4032] xref: BAMS:ipcs @@ -222465,6 +226214,8 @@ is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus id: UBERON:0002915 name: postcentral sulcus of parietal lobe def: "The postcentral sulcus of the parietal lobe lies parallel to, and behind, the central sulcus in the human brain. (A sulcus is one of the prominent grooves on the surface of the brain. ) The postcentral sulcus divides the postcentral gyrus from the remainder of the parietal lobe. [WP,unvetted]." [Wikipedia:Postcentral_sulcus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "POCS" BROAD OMO:0003000 [BIRNLEX:4033, NIFSTD:NeuroNames_abbrevSource] synonym: "postcentral fissure of cerebral hemisphere" EXACT [FMA:83774] @@ -222493,6 +226244,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/6c/P id: UBERON:0002916 name: central sulcus def: "The central sulcus is a fold in the cerebral cortex of brains in vertebrates. Also called the central fissure, it was originally called the fissure of Rolando or the Rolandic fissure, after Luigi Rolando. The central sulcus is a prominent landmark of the brain, separating the parietal lobe from the frontal lobe and the primary motor cortex from the primary somatosensory cortex. [WP,unvetted]." [Wikipedia:Central_sulcus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "central cerebral sulcus" EXACT [FMA:83752] synonym: "central fissure" EXACT [FMA:83752] @@ -222541,6 +226294,8 @@ consider: FMA:77871 id: UBERON:0002918 name: medial parabrachial nucleus def: "The Medial parabrachial nucleus is a nucleus of the pons which constitutes part of the pneumotaxic center. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]." [Wikipedia:Medial_parabrachial_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nucleus parabrachialis medialis" RELATED OMO:0003011 [Wikipedia:Medial_parabrachial_nucleus] synonym: "parabrachial nucleus, medial division" RELATED [NeuroNames:587] @@ -222562,6 +226317,8 @@ relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0002919 name: anterior parolfactory sulcus +subset: human_subset +subset: mouse_subset synonym: "APS" BROAD OMO:0003000 [BIRNLEX:4039, NIFSTD:NeuroNames_abbrevSource] synonym: "paraolfactory sulci" EXACT OMO:0003004 [BIRNLEX:4039] synonym: "paraolfactory sulcus" EXACT [FMA:83744] @@ -222579,6 +226336,8 @@ disjoint_from: UBERON:0002923 {source="lexical"} ! posterior parolfactory sulcus id: UBERON:0002920 name: callosal sulcus def: "The callosal sulcus is a sulcus in the brain between the cingulate gyrus and corpus callosum, below the longitudinal cerebral fissure. [WP,unvetted]." [Wikipedia:Callosal_sulcus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "CAS" BROAD OMO:0003000 [BIRNLEX:4040, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus corporis callosi" EXACT [BIRNLEX:4040] @@ -222600,6 +226359,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/43/Gr id: UBERON:0002921 name: longitudinal fissure def: "The deep groove which separates the two hemispheres of the vertebrate brain. The falx cerebri, a dural brain covering, lies within the medial longitudinal fissure. [WP,unvetted]." [Wikipedia:Medial_longitudinal_fissure] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "fissura interhemispherica" EXACT [BIRNLEX:4041] @@ -222633,6 +226394,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/92/He id: UBERON:0002922 name: olfactory trigone def: "A small triangular area in front of the anterior perforated substance. Its apex, directed forward, occupies the posterior part of the olfactory sulcus, and is brought into view by throwing back the olfactory tract (adapted from Wikipedia)." [BIRNLEX:4042] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "OLT" BROAD OMO:0003000 [BIRNLEX:4042, NIFSTD:NeuroNames_abbrevSource] synonym: "trigonum olfactorium" EXACT [BIRNLEX:4042] @@ -222653,6 +226416,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gr [Term] id: UBERON:0002923 name: posterior parolfactory sulcus +subset: human_subset +subset: mouse_subset synonym: "PPOS" BROAD OMO:0003000 [BIRNLEX:4043, NIFSTD:NeuroNames_abbrevSource] synonym: "sulcus parolfactorius posterior" RELATED OMO:0003011 [NeuroNames:38] xref: BAMS:ppos @@ -222671,6 +226436,8 @@ name: terminal nerve def: "The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest." [PMID:15821344, Wikipedia:Terminal_nerve, ZFIN:ZDB-PUB-041202-1] comment: http://www.ncbi.nlm.nih.gov/pubmed/2286018 state: 'The presence of an additional cranial nerve (the nervus terminalis or cranial nerve zero) is well documented in many non-human vertebrate species. However, its existence in the adult human has been disputed. The present study focused on the structure and incidence of this nerve in the adult human brain. The nerve was examined post-mortem in 10 adult brains using dissection microscopy, light microscopy, transmission electron microscopy, and immunohistochemistry. In all specimens, the nervus terminalis was identified bilaterally as a microscopic plexus of unmyelinated peripheral nerve fascicles in the subarachnoid space covering the gyrus rectus of the orbital surface of the frontal lobes. The plexus appeared in the region of the cribriform plate of the ethmoid and coursed posteriorly to the vicinity of the olfactory trigone, medial olfactory gyrus, and lamina terminalis. We conclude that the terminal nerve is a common finding in the adult human brain, confirming early light microscopic reports.' subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "cranial nerve 0" EXACT [Wikipedia:Terminal_nerve] synonym: "cranial nerve zero" EXACT [Wikipedia:Terminal_nerve] @@ -222699,6 +226466,8 @@ property_value: external_definition "The terminal nerve, located anterior to cra id: UBERON:0002925 name: trigeminal nucleus def: "A nucleus of brain that is part of a trigeminal nuclear complex." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nucleus mesencephalicus nervi trigemini" RELATED [BTO:0001074] synonym: "nucleus mesencephalicus trigeminalis" RELATED [BTO:0001074] @@ -222733,6 +226502,8 @@ property_value: external_ontology_notes "massive inconsistencies between GO, MA, id: UBERON:0002926 name: gustatory epithelium def: "A sensory epithelium that is part of a gustatory system." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:62412 xref: http://uri.neuinfo.org/nif/nifstd/nifext_12 is_a: UBERON:0006934 ! sensory epithelium @@ -222746,6 +226517,8 @@ relationship: part_of UBERON:0001723 {gci_relation="part_of", gci_filler="NCBITa id: UBERON:0002928 name: dentate gyrus polymorphic layer def: "A cellular layer of the dentate gyrus enclosed by the granule cell layer. A number of cell types are located in the polymorphic layer but the most prominent is the mossy cell." [http://orcid.org/0000-0002-6601-2165, PMCID:PMC2492885] +subset: human_subset +subset: mouse_subset synonym: "CA4" RELATED OMO:0003002 [PMID:17765709] synonym: "polymorph layer of the dentate gyrus" RELATED [BAMS:PoDG] xref: BAMS:po @@ -222766,6 +226539,8 @@ property_value: editor_note "TODO: add mossy cell" xsd:string [Term] id: UBERON:0002929 name: dentate gyrus pyramidal layer +subset: human_subset +subset: mouse_subset xref: EMAPA:37515 {source="MA:th"} xref: MA:0000948 is_a: UBERON:0002304 ! layer of dentate gyrus @@ -222774,6 +226549,8 @@ property_value: editor_note "existence of this layer is dubious, added for consi [Term] id: UBERON:0002930 name: tectopontine tract +subset: human_subset +subset: mouse_subset synonym: "fibrae tectopontinae" EXACT OMO:0003011 [FMA:72505, FMA:TA] synonym: "tectopontine fibers" EXACT [FMA:72505] synonym: "tectopontine fibres" EXACT [FMA:72505] @@ -222790,6 +226567,8 @@ relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0002931 name: dorsal septal nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus dorsalis septi" RELATED OMO:0003011 [NeuroNames:260] synonym: "nucleus septalis dorsalis" RELATED OMO:0003011 [NeuroNames:260] xref: BAMS:DS @@ -222804,6 +226583,8 @@ relationship: part_of UBERON:0002663 {source="NIFSTD"} ! septal nuclear complex id: UBERON:0002932 name: trapezoid body def: "Bundles of axons traversing the pontine tegmentum oriented in the mediolateral direction. These fibers are related to the auditory pathway. Nuclei are embedded within these fibers." [BIRNLEX:707] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "corpus trapezoides" RELATED OMO:0003011 [NeuroNames:594] synonym: "corpus trapezoideum" RELATED OMO:0003011 [Wikipedia:Trapezoid_body] @@ -222830,6 +226611,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bb/Gr [Term] id: UBERON:0002933 name: nucleus of anterior commissure +subset: human_subset +subset: mouse_subset synonym: "anterior commissural nucleus" RELATED [BAMS:AC] synonym: "anterior commissure nucleus" EXACT [FMA:61883] synonym: "bed nucleus of anterior commissure" EXACT [FMA:61883] @@ -222857,6 +226640,8 @@ relationship: part_of UBERON:0002663 ! septal nuclear complex [Term] id: UBERON:0002934 name: ventral oculomotor nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus nervi oculomotorii ventrolateralis" RELATED OMO:0003011 [NeuroNames:496] synonym: "nucleus nervi oculomotorii, pars ventralis" RELATED OMO:0003011 [NeuroNames:496] synonym: "V3" BROAD OMO:0003000 [BIRNLEX:713, NIFSTD:NeuroNames_abbrevSource] @@ -222876,6 +226661,8 @@ relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear comp [Term] id: UBERON:0002935 name: magnocellular part of ventral anterior nucleus +subset: human_subset +subset: mouse_subset synonym: "magnocellular division of ventral anterior nucleus of thalamus" EXACT [FMA:62192] synonym: "magnocellular part of the ventral anterior nucleus" RELATED [NeuroNames:336] synonym: "magnocellular ventral anterior nucleus" EXACT [BIRNLEX:716] @@ -222906,6 +226693,8 @@ relationship: part_of UBERON:0002637 {source="FMA"} ! ventral anterior nucleus o id: UBERON:0002936 name: magnocellular part of red nucleus def: "The magnocellular red nucleus (RNm) is located in the rostral midbrain and is involved in motor coordination. Together with the parvocellular red nucleus, it makes up the red nucleus." [Wikipedia:Magnocellular_red_nucleus] +subset: human_subset +subset: mouse_subset synonym: "magnocellular part of the red nucleus" RELATED [NeuroNames:507] synonym: "nucleus ruber magnocellularis" RELATED OMO:0003011 [NeuroNames:507] synonym: "nucleus ruber, pars magnocellularis" RELATED OMO:0003011 [NeuroNames:507] @@ -222932,6 +226721,8 @@ relationship: part_of UBERON:0001947 ! red nucleus [Term] id: UBERON:0002937 name: parvocellular part of ventral anterior nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus ventralis anterior (dewulf)" EXACT [BIRNLEX:722] synonym: "nucleus ventralis anterior, pars parvicellularis" EXACT [BIRNLEX:722] synonym: "nucleus ventralis anterior, pars parvocellularis" RELATED OMO:0003011 [NeuroNames:335] @@ -222953,6 +226744,8 @@ relationship: part_of UBERON:0002637 {source="FMA"} ! ventral anterior nucleus o id: UBERON:0002938 name: parvocellular part of red nucleus def: "The parvocellular red nucleus (RNp) is located in the rostral midbrain and is involved in motor coordination. Together with the magnocellular red nucleus, it makes up the red nucleus." [Wikipedia:Parvocellular_red_nucleus] +subset: human_subset +subset: mouse_subset synonym: "neoruber" EXACT [FMA:72430] synonym: "neorubrum" RELATED OMO:0003011 [NeuroNames:506] synonym: "nucleus ruber parvocellularis" RELATED OMO:0003011 [NeuroNames:506] @@ -222980,6 +226773,8 @@ relationship: part_of UBERON:0001947 ! red nucleus [Term] id: UBERON:0002939 name: ventral posteroinferior nucleus +subset: human_subset +subset: mouse_subset synonym: "nuclei ventrales posteriores thalami" RELATED [BTO:0002464] synonym: "nuclei ventrobasales thalami" RELATED [BTO:0002464] synonym: "nucleus ventralis posterior inferior thalami" EXACT OMO:0003011 [FMA:62199, FMA:TA] @@ -223015,6 +226810,8 @@ relationship: part_of UBERON:0002596 {source="FMA"} ! ventral posterior nucleus [Term] id: UBERON:0002940 name: anterior column of fornix +subset: human_subset +subset: mouse_subset synonym: "anterior crus of fornix" EXACT [FMA:61966] synonym: "anterior pillar of fornix" EXACT [FMA:61966] synonym: "columna fornicis anterior" EXACT OMO:0003011 [FMA:61966, FMA:TA] @@ -223033,6 +226830,8 @@ relationship: part_of UBERON:0000052 {source="NIFSTD"} ! fornix of brain [Term] id: UBERON:0002941 name: capsule of red nucleus +subset: human_subset +subset: mouse_subset synonym: "capsula nuclei rubris tegmenti" RELATED OMO:0003011 [NeuroNames:508] synonym: "capsule of the red nucleus" RELATED [NeuroNames:508] synonym: "CR" BROAD OMO:0003000 [BIRNLEX:732, NIFSTD:NeuroNames_abbrevSource] @@ -223053,6 +226852,8 @@ id: UBERON:0002942 name: ventral posterolateral nucleus def: "The ventral posterolateral nucleus (VPL) is a nucleus of the thalamus. Together with the ventral posteromedial nucleus (VPM) it constitutes the ventral posterior nucleus. [WP,unvetted]." [Wikipedia:Ventral_posterolateral_nucleus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nucleus ventralis posterior lateralis thalami" EXACT [BIRNLEX:737] synonym: "nucleus ventralis posterolateralis" EXACT [BIRNLEX:737] @@ -223097,6 +226898,8 @@ id: UBERON:0002943 name: lingual gyrus def: "Component of the occipital lobe. The rostral boundary of the lingual gyrus was the posterior extent of the parahippocampal gyrus whereas the caudal boundary was the most posterior coronal slice where the gyrus could be visualized. The medial and lateral boundaries were the medial portion of the temporal and occipital cortices and the medial bank of the collateral sulcus respectively (Christine Fennema-Notestine)." [BIRNLEX:740] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "gyrus lingualis" RELATED OMO:0003011 [Wikipedia:Lingual_gyrus] synonym: "gyrus occipitotemporalis medialis" EXACT OMO:0003011 [FMA:61904, FMA:TA] @@ -223127,6 +226930,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0002944 name: spinothalamic tract of medulla def: "Part of spinothalamic tract that is in the medulla." [BIRNLEX:741] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "spinothalamic tract" BROAD [BIRNLEX:741, FMA:72644] synonym: "spinothalamic tract of the medulla" RELATED [NeuroNames:810] @@ -223151,6 +226956,8 @@ id: UBERON:0002945 name: ventral posteromedial nucleus of thalamus def: "The ventral posteromedial nucleus is a nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Ventral_posteromedial_nucleus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "arcuate nucleus of thalamus" EXACT [FMA:62202] synonym: "arcuate nucleus of the thalamus" EXACT [BIRNLEX:743] @@ -223218,6 +227025,8 @@ id: UBERON:0002947 name: frontal operculum def: "Portion of frontal lobe that overlaps the insular cortex (adapted from Wikipedia)." [BIRNLEX:751] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "nucleus ventralis oralis, pars medialis (Dewulf)" RELATED OMO:0003011 [NeuroNames:2205] synonym: "operculum frontale" RELATED OMO:0003011 [Wikipedia:Operculum_(brain)] xref: BAMS:FOp @@ -223239,6 +227048,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0002948 name: superior occipital gyrus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "gyrus occipitalis primus" EXACT [FMA:61901] synonym: "gyrus occipitalis superior" RELATED OMO:0003011 [NeuroNames:154] xref: BAMS:O1 @@ -223260,6 +227071,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0002949 name: tectospinal tract def: "A long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the superior colliculus of the midbrain towards target cells in the ventral spinal cord[GO]." [Wikipedia:Tectospinal_tract] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "Held's bundle" EXACT [FMA:72620] synonym: "tectospinal pathway" EXACT [FMA:72620] @@ -223313,6 +227126,8 @@ consider: FMA:62310 id: UBERON:0002952 name: intermediate acoustic stria def: "White matter structure containing axons arising from cochlear nuclear complex (Brodal, Neurological Anatomy, 3rd ed, 1985, pg 609)." [BIRNLEX:768] +subset: human_subset +subset: mouse_subset synonym: "commissure of held" EXACT [] synonym: "intermediate acoustic stria (held)" EXACT [BIRNLEX:768] synonym: "intermediate acoustic stria of held" EXACT [] @@ -223333,6 +227148,8 @@ id: UBERON:0002953 name: lateral lemniscus alt_id: UBERON:0003042 def: "A fiber bundle that runs through the medulla, pons and midbrain that arises in the cochlear nucleus and projects to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. The brainstem nuclei include the superior olive, the medial nucleus of the trapezoid body, and the dorsal nucleus of the lateral lemniscus. Fibers leaving these brainstem nuclei ascending to the inferior colliculus rejoin the lateral lemniscus. In that sense, this is not a 'lemniscus' in the true sense of the word (second order, decussated sensory axons), as there is third (and out of the lateral superior olive, fourth) order information coming out of some of these brainstem nuclei. Adapted from Wikipedia.org (MM)." [BIRNLEX:976, Wikipedia:Lateral_lemniscus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "central acoustic tract" RELATED [NeuroNames:609] synonym: "lateral fillet" EXACT [FMA:72502] @@ -223361,6 +227178,8 @@ id: UBERON:0002954 name: dorsal hypothalamic area def: "A relatively small region of the hypothalamus located inferior to the hypothalamic sulcus." [http://medical-dictionary.thefreedictionary.com/dorsal+hypothalamic+area] comment: ). +subset: human_subset +subset: mouse_subset synonym: "area dorsalis hypothalami" RELATED OMO:0003011 [NeuroNames:430] synonym: "area hypothalamica dorsalis" RELATED OMO:0003011 [NeuroNames:430] synonym: "DH" BROAD OMO:0003000 [BIRNLEX:777, NIFSTD:NeuroNames_abbrevSource] @@ -223384,6 +227203,8 @@ property_value: taxon_notes "In humans it contains the following nuclei: portion [Term] id: UBERON:0002955 name: rhomboidal nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus commissuralis rhomboidalis" RELATED [BTO:0002458] synonym: "nucleus rhomboidalis" RELATED [BTO:0002458] synonym: "nucleus rhomboidalis thalami" RELATED OMO:0003011 [NeuroNames:310] @@ -223414,6 +227235,8 @@ relationship: part_of UBERON:0002705 {source="NIFSTD"} ! midline nuclear group id: UBERON:0002956 name: granular layer of cerebellar cortex def: "The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer." [GO:0021681] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebellar granular layer" EXACT [GO:0021681] synonym: "cerebellar granule cell layer" EXACT [] @@ -223446,6 +227269,8 @@ relationship: mutually_spatially_disjoint_with UBERON:0002979 {source="ABA"} ! P [Term] id: UBERON:0002957 name: caudal central oculomotor nucleus +subset: human_subset +subset: mouse_subset synonym: "caudal central nucleus" EXACT [FMA:72426] synonym: "caudal central nucleus of oculomotor nerve" EXACT [FMA:72426] synonym: "CC3" BROAD OMO:0003000 [BIRNLEX:780, NIFSTD:NeuroNames_abbrevSource] @@ -223468,6 +227293,8 @@ relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear comp id: UBERON:0002958 name: medial lemniscus of pons def: "Part of medial lemniscus located within the pons." [BIRNLEX:781] +subset: human_subset +subset: mouse_subset synonym: "lemniscus medial" RELATED [BIRNLEX:887] synonym: "lemniscus medialis (pontis)" RELATED OMO:0003011 [NeuroNames:610] synonym: "medial lemniscus of pons of varolius" EXACT [OBOL:automatic] @@ -223487,6 +227314,8 @@ relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum [Term] id: UBERON:0002959 name: subfascicular nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus subfascicularis" RELATED OMO:0003011 [NeuroNames:311] synonym: "SF" BROAD OMO:0003000 [BIRNLEX:783, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:SF @@ -223500,6 +227329,8 @@ relationship: part_of UBERON:0002705 {source="NIFSTD"} ! midline nuclear group [Term] id: UBERON:0002960 name: central oculomotor nucleus +subset: human_subset +subset: mouse_subset synonym: "C3" BROAD OMO:0003000 [BIRNLEX:786, NIFSTD:NeuroNames_abbrevSource] synonym: "central nucleus of perlia" EXACT [] synonym: "nucleus nervi oculomotorii centralis" RELATED OMO:0003011 [NeuroNames:499] @@ -223521,6 +227352,8 @@ relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear comp id: UBERON:0002961 name: archicortex def: "A portion of the cerebral cortex that, with the paleocortex, develops in association with the olfactory system, and which is phylogenetically older than the neocortex and lacks its layered structure. The embryonic archicortex corresponds to the cortex of the dentate gyrus and hippocampus in mature mammals. Being part of the limbic system, it has functions related to emotions and formation of memory. Signals being sent from the limbic lobe to the hippocampal formations can go via the archicortex as an intermediate." [Wikipedia:Archicortex] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "archipallium" EXACT [FMA:62424] synonym: "hippocampal pallium" RELATED [] @@ -223543,6 +227376,8 @@ id: UBERON:0002962 name: adductor pollicis muscle def: "A muscle in the manus that functions to adduct the thumb. It has two heads: transverse and oblique. It is a fleshy, flat, triangular, and fan-shaped muscle deep in the thenar compartment beneath the long flexor tendons and the lumbrical muscles at the center of the palm. It overlies the metacarpal bones and the interosseous muscles[WP]." [Wikipedia:Adductor_pollicis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "adductor digiti primi" RELATED [EMAPA:36213] synonym: "adductor pollicis" EXACT [Wikipedia:Adductor_pollicis_muscle] synonym: "musculus adductor pollicis" RELATED OMO:0003011 [Wikipedia:Adductor_pollicis_muscle] @@ -223564,6 +227399,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/df/Mu id: UBERON:0002963 name: caudal pontine reticular nucleus def: "The caudal pontine reticular nucleus is composed of gigantocellular neurons. In rabbits and cats it is exclusively giant cells, however in humans there are normally sized cells as well. The pontis caudalis is rostral to the gigantocellular nucleus and is located in the caudal pons, as the name would indicate. The pontis caudalis has been known to mediate head movement, in concert with the nucleus gigantocellularis and the superior colliculus. The neurons in the dorsal half of this nuclei fire rhythmically during mastication, and in an anesthetized animal it is possible to induce mastication via electrical stimulation of the PC or adjacent areas of the gigantocellular nucleus. The pontis caudalis is also thought to play a role in the grinding of teeth during sleep." [Wikipedia:Caudal_pontine_reticular_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nucleus reticularis pontis caudalis" RELATED OMO:0003011 [Wikipedia:Caudal_pontine_reticular_nucleus] synonym: "pontine reticular nucleus caudal part" RELATED [BAMS:PnC, BAMS:PRNc] @@ -223592,6 +227429,8 @@ relationship: part_of UBERON:0002573 {source="FMA"} ! pontine reticular formatio [Term] id: UBERON:0002964 name: dorsal oculomotor nucleus +subset: human_subset +subset: mouse_subset synonym: "D3" BROAD OMO:0003000 [BIRNLEX:793, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "dorsal oculomotor cell column" EXACT [FMA:62442] @@ -223611,6 +227450,8 @@ relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear comp [Term] id: UBERON:0002965 name: rostral intralaminar nuclear group +subset: human_subset +subset: mouse_subset synonym: "anterior group of intralaminar nuclei" EXACT [DHBA:AILN] synonym: "nuclei intralaminares rostrales" EXACT [BIRNLEX:794] synonym: "RIL" BROAD OMO:0003000 [BIRNLEX:794, NIFSTD:NeuroNames_abbrevSource] @@ -223645,6 +227486,8 @@ id: UBERON:0002967 name: cingulate gyrus def: "One of the convolutions on the medial surface of the cerebral hemisphere. It surrounds the rostral part of the brain and interhemispheric commissure and forms part of the limbic system. (MSH) One of three essential structures comprising the limbic lobe, the other two being the hippocampus and parahippocampal gyrus. (CSP)." [BIRNLEX:798] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cingular gyrus" RELATED [NeuroNames:159] @@ -223676,6 +227519,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gr [Term] id: UBERON:0002968 name: central gray substance of pons +subset: human_subset +subset: mouse_subset synonym: "central gray of pons" EXACT [FMA:72470] synonym: "central gray of the pons" RELATED [BAMS:CGPn] synonym: "griseum centrale pontis" EXACT OMO:0003011 [FMA:72470, FMA:TA] @@ -223708,6 +227553,8 @@ relationship: part_of UBERON:0002573 {source="FMA"} ! pontine reticular formatio id: UBERON:0002969 name: inferior temporal sulcus def: "The inferior surface of the temporal lobe is concave, and is continuous posteriorly with the tentorial surface of the occipital lobe. It is traversed by the inferior temporal sulcus, which extends from near the occipital pole behind, to within a short distance of the temporal pole in front, but is frequently subdivided by bridging gyri." [Wikipedia:Inferior_temporal_sulcus] +subset: human_subset +subset: mouse_subset synonym: "inferior temporal sulcus-1" EXACT [FMA:83784] synonym: "middle temporal fissure (Crosby)" RELATED [NeuroNames:130] synonym: "middle temporal sulcus (szikla)" EXACT [] @@ -223733,6 +227580,8 @@ relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002970 name: intermediate oculomotor nucleus +subset: human_subset +subset: mouse_subset synonym: "I3" BROAD OMO:0003000 [BIRNLEX:803, NIFSTD:NeuroNames_abbrevSource] synonym: "intermediate nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "intermediate oculomotor cell column" EXACT [FMA:72420] @@ -223754,6 +227603,8 @@ relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear comp id: UBERON:0002971 name: periolivary nucleus def: "A nucleus of the superior olivary complex that surrounds the primary superior olivary nuclei." [Wikipedia:Superior_olivary_complex#Periolivary_nuclei] +subset: human_subset +subset: mouse_subset synonym: "nuclei periolivares" EXACT OMO:0003011 [FMA:72475, FMA:TA] synonym: "nucleus periolivaris" RELATED OMO:0003011 [NeuroNames:574] synonym: "peri-olivary nuclei" EXACT [FMA:72475] @@ -223780,6 +227631,8 @@ id: UBERON:0002972 name: centromedian nucleus of thalamus def: "In the anatomy of the brain, the centromedian nucleus, also known as the centrum medianum, (CM or Cm-Pf) is a part of the intralaminar nucleus (ILN) of the thalamus. There are two centromedian nuclei arranged bilaterally. It contains about 2000 neurons per cubic millimetre and has a volume of about 310 cubic millimetres with 664,000 neurons in total. [WP,unvetted]." [Wikipedia:Centromedian_nucleus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "central magnocellular nucleus of thalamus" EXACT [FMA:62165] synonym: "central nucleus-1" EXACT [FMA:62165] @@ -223821,6 +227674,8 @@ id: UBERON:0002973 name: parahippocampal gyrus def: "Component of the temporal lobe on the mesial surface, posterior to the entorhinal cortex. The rostral and caudal boundaries are the posterior end of the netorhinal cortex and the caudal portion of the hippocampus, respectively. The medial boudnary is designated as the medial aspect off the temporal lobe and the lateral boundary is the collateral sulcus (Christine Fennema-Notestine)." [BIRNLEX:807] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "gyrus hippocampi" RELATED OMO:0003011 [NeuroNames:164] synonym: "gyrus parahippocampalis" RELATED OMO:0003011 [Wikipedia:Parahippocampal_gyrus] @@ -223855,6 +227710,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b1/Hu id: UBERON:0002974 name: molecular layer of cerebellar cortex def: "The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells." [GO:0021679] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebellar molecular layer" EXACT [GO:0021679] synonym: "cerebellum molecular cell layer" EXACT [] @@ -223887,6 +227744,8 @@ property_value: taxon_notes "Compare with ZFA:0000636 - cerebellar crest, which [Term] id: UBERON:0002975 name: medial oculomotor nucleus +subset: human_subset +subset: mouse_subset synonym: "M3" BROAD OMO:0003000 [BIRNLEX:813, NIFSTD:NeuroNames_abbrevSource] synonym: "medial nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "medial oculomotor cell column" EXACT [FMA:72421] @@ -223906,6 +227765,8 @@ relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear comp [Term] id: UBERON:0002976 name: preolivary nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus preolivaris" RELATED OMO:0003011 [NeuroNames:573] synonym: "preolivary nuclei" EXACT [FMA:72474] xref: BAMS:PrO @@ -223921,6 +227782,8 @@ relationship: part_of UBERON:0002128 ! superior olivary complex [Term] id: UBERON:0002977 name: triangular septal nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus septalis triangularis" RELATED OMO:0003011 [NeuroNames:263] synonym: "nucleus triangularis septi" EXACT OMO:0003011 [FMA:61880, FMA:TA] synonym: "triangular nucleus of septum" EXACT [FMA:61880] @@ -223944,6 +227807,8 @@ relationship: part_of UBERON:0002663 {source="NIFSTD"} ! septal nuclear complex [Term] id: UBERON:0002978 name: oral part of ventral lateral nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus lateralis oralis situs principalis" EXACT [BIRNLEX:817] synonym: "nucleus ventralis lateralis, pars oralis" EXACT [BIRNLEX:817] synonym: "nucleus ventrooralis externus, anterior part (van buren)" EXACT [BIRNLEX:817] @@ -223966,6 +227831,8 @@ relationship: part_of UBERON:0001925 ! ventral lateral nucleus of thalamus id: UBERON:0002979 name: Purkinje cell layer of cerebellar cortex def: "The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells." [GO:0021680] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebellar Purkinje cell layer" EXACT [FMA:83896, GO:0021694] synonym: "cerebellum Purkinje cell layer" EXACT [] @@ -224003,6 +227870,8 @@ id: UBERON:0002980 name: opercular part of inferior frontal gyrus def: "Component of the inferior frontal gyrus.defined as the first gyrus from the precentral gyrus." [BIRNLEX:823] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "gyrus frontalis inferior, pars opercularis" EXACT OMO:0003011 [FMA:61981, FMA:TA] synonym: "inferior frontal gyrus, opercular part" RELATED [BAMS:IFGOp] synonym: "inferior frontal gyrus, pars opercularis" BROAD [http://orcid.org/0000-0001-6755-0259] @@ -224032,6 +227901,8 @@ id: UBERON:0002981 name: pulvinar nucleus def: "One of a set of nuclei located in the posterior thalamus, that projects to all or nearly all extra-striate visual areas." [BIRNLEX:824] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nuclei pulvinares" EXACT OMO:0003011 [FMA:62178, FMA:TA] synonym: "nucleus pulvinaris" RELATED OMO:0003011 [NeuroNames:328] @@ -224067,6 +227938,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gr id: UBERON:0002982 name: inferior pulvinar nucleus def: "One of four subdivisions recognized in the primate pulvinar based on initially on topography, located ventrally between the medial and lateral geniculate bodies (Carpenter, A core text of neuroanatomy, 3rd ed., 1985, pg 238)." [BIRNLEX:830] +subset: human_subset +subset: mouse_subset synonym: "IPul" BROAD OMO:0003000 [BIRNLEX:830, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus pulvinaris inferior" EXACT [BIRNLEX:830] synonym: "nucleus pulvinaris inferior thalami" EXACT [BIRNLEX:830] @@ -224088,6 +227961,8 @@ id: UBERON:0002983 name: lateral posterior nucleus of thalamus def: "The lateral posterior nucleus is a nucleus of the thalamus. It acts in concert with the pulvinar." [Wikipedia:Lateral_posterior_nucleus_of_thalamus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lateral posterior complex" RELATED [BAMS:LP] synonym: "lateral posterior nucleus" EXACT [FMA:62177] synonym: "lateral posterior nucleus of thalamus" EXACT [FMA:62177] @@ -224126,6 +228001,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0002984 name: lateral dorsal nucleus def: "The lateral dorsal nucleus is a nucleus of the thalamus. It acts in concert with the anterior nuclei of thalamus. It receives significant input from several subdivisions of visual cortex, and has a primary output to parietal cortex on the dorsolateral cortical convexity, giving it access to limbic forebrain nuclei important for emotion and behavior functions." [Wikipedia:Lateral_dorsal_nucleus_of_thalamus] +subset: human_subset +subset: mouse_subset synonym: "dorsal thalamus, lateral group" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "lateral dorsal nucleus of thalamus" EXACT [FMA:62176] synonym: "lateral dorsal nucleus of the thalamus" RELATED [NeuroNames:326] @@ -224168,6 +228045,8 @@ relationship: part_of UBERON:0002736 {source="NIFSTD"} ! lateral nuclear group o id: UBERON:0002985 name: ventral nucleus of medial geniculate body def: "Ventral division of medial geniculate body, first described by Morest (1964) in the cat, but found in primate, mouse and rat as well. It begins midway in the posterior third of the medial geniculate in the cat and is prominant anteriorly. The boundary between the dorsal and ventral divisions is demarcated in rat by a thick horizontally oriented axon bundle, the midgeniculate bundle (Webster, 1995, fig 16)." [BIRNLEX:845] +subset: human_subset +subset: mouse_subset synonym: "medial geniculate complex ventral part" RELATED [BAMS:MGv] synonym: "medial geniculate complex, ventral part" EXACT [FMA:62217] synonym: "medial geniculate nucleus ventral part" RELATED [BAMS:MGv] @@ -224219,6 +228098,8 @@ consider: UMLS:C0027834 id: UBERON:0002987 name: anterior spinocerebellar tract def: "Runs through the ventrolateral surface of the spinal cord. It enters the cerebellum through the superior cerebellar peduncle. It crosses the midline at the segmental level and recrosses in the cerebellum. Its terminals are distributed in the cerebellar anterior lobe, preferentially in the ipsilateral intermediate cortex. Rostrally, it extends to lobule II." [BIRNLEX:848] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "Gower's tract" EXACT [BIRNLEX:848] synonym: "Gowers' tract" EXACT [FMA:72642] @@ -224249,6 +228130,8 @@ property_value: external_definition "The ventral spinocerebellar tract conveys p [Term] id: UBERON:0002988 name: first dorsal interosseous of manus +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "abductor indicis" EXACT [FMA:37424] synonym: "first dorsal interosseous muscle of hand" RELATED [FMA:37424] @@ -224263,6 +228146,8 @@ name: anconeus muscle def: "A small muscle on the posterior aspect of the elbow joint." [Wikipedia:Anconeus_muscle] comment: Some consider anconeus to be a continuation of the triceps brachii muscle. Some sources consider it to be part of the posterior compartment of the arm, while others consider it part of the posterior compartment of the forearm. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "aconeus" RELATED [EMAPA:36181] synonym: "anconeus" EXACT [Wikipedia:Anconeus_muscle] synonym: "m. anconeus" EXACT [AAO:0010714] @@ -224285,6 +228170,8 @@ id: UBERON:0002990 name: mammillothalamic tract of hypothalamus def: "Part of mammillothalamic tract contained within the hypothalamus." [BIRNLEX:855] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fasciculus mamillothalamicus (hypothalami)" RELATED OMO:0003011 [NeuroNames:424] synonym: "mammillothalamic tract of the hypothalamus" RELATED [NeuroNames:424] @@ -224305,6 +228192,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0002991 name: supramammillary commissure +subset: human_subset +subset: mouse_subset synonym: "commissura supramamillaris" RELATED OMO:0003011 [NeuroNames:421] synonym: "commissura supramammillaris" RELATED OMO:0003011 [NeuroNames:421] synonym: "commissure of forel" EXACT [] @@ -224330,6 +228219,8 @@ relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic reg id: UBERON:0002992 name: paratenial nucleus def: "One of the median nuclei of the thalamus, situated ventral and medial to the stria medullaris." [BTO:0002457] +subset: human_subset +subset: mouse_subset synonym: "nuclei parataeniales thalami" RELATED OMO:0003011 [NeuroNames:307] synonym: "nucleus parataenialis" EXACT OMO:0003011 [BTO:0002457, FMA:62151, FMA:TA] synonym: "nucleus parataenialis (Hassler)" RELATED OMO:0003011 [NeuroNames:307] @@ -224358,6 +228249,8 @@ relationship: part_of UBERON:0002705 {source="ABA", source="FMA", source="NIF"} [Term] id: UBERON:0002993 name: inferior central nucleus +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "inferior central nucleus (of roller)" EXACT [FMA:72466] synonym: "inferior central nucleus of raphe" EXACT [FMA:72466] @@ -224374,6 +228267,8 @@ property_value: editor_note "TODO - compare with UBERON:0002881 ! sublingual nuc [Term] id: UBERON:0002995 name: substantia nigra pars lateralis +subset: human_subset +subset: mouse_subset synonym: "internal capsule (Burdach)" RELATED [NeuroNames:198] synonym: "lateral part of substantia nigra" EXACT [FMA:76844] synonym: "pars lateralis" EXACT [BIRNLEX:866] @@ -224410,6 +228305,8 @@ property_value: external_ontology_notes "WP says 'Sometimes, a third region, the id: UBERON:0002996 name: nucleus of optic tract def: "Predominantly gray matter structure consisting of large multipoloar cells lying aong axons of the brachium of the superior colliculus, lyaing adjaent to the dorsal terminal nucleus of the accessory optic system. In several species, cells of this nucleus receive input from the contralateral retina (Sefton and Dreher in Paxinos, G. The rat nervous system, 1995, pg. 862)." [BIRNLEX:868] +subset: human_subset +subset: mouse_subset synonym: "large-celled nucleus of optic tract" EXACT [FMA:72403] synonym: "lentiform nucleus of pretectal area" EXACT [FMA:72403] synonym: "nucleus magnocellularis tractus optici" RELATED OMO:0003011 [NeuroNames:470] @@ -224435,6 +228332,8 @@ relationship: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0002997 name: nucleus of medial eminence +subset: human_subset +subset: mouse_subset synonym: "medial eminence nucleus" EXACT [FMA:72467] synonym: "nucleus eminentiae teretis" EXACT OMO:0003011 [FMA:72467, FMA:TA] synonym: "nucleus of eminentia teres" EXACT [FMA:72467] @@ -224449,6 +228348,8 @@ id: UBERON:0002998 name: inferior frontal gyrus def: "Component of the frontal lobe, lateral aspect. The rostral boundary is the first appearance of the inferior frontal sulcus whereas the caudal boundary is the precentral gyrus. The medial and lateral boundaries are the lateral bank of the inferior frontal sulcus and the medial bank of the lateral orbital sulcus and/or the circular insular sulcus respectively (Christein Fennema-Notestine)." [BIRNLEX:873] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "gyrus F3" RELATED OMO:0003011 [NeuroNames:85] synonym: "gyrus frontalis inferior" RELATED OMO:0003011 [Wikipedia:Inferior_frontal_gyrus] @@ -224476,6 +228377,8 @@ property_value: external_ontology_notes "ncit has two classes, but these are exa id: UBERON:0002999 name: oral pontine reticular nucleus def: "The oral pontine reticular nucleus is delineated from its caudal brother, with which it shares its first three names. This nucleus tapers into the lower mesencephalic reticular formation and contains sporadic giant cells. Different populations of the pontis oralis have displayed discharge patterns which coordinate with phasic movements to and from paradoxical sleep. From this information it has been implied that the n.r. pontis oralis is involved in the mediation of changing to and from REM sleep. [WP,unvetted]." [Wikipedia:Oral_pontine_reticular_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nucleus reticularis pontis oralis" RELATED OMO:0003011 [Wikipedia:Oral_pontine_reticular_nucleus] synonym: "pontine reticular nucleus rostral part" RELATED [BAMS:PRNr] @@ -224512,6 +228415,8 @@ consider: UMLS:C0021770 id: UBERON:0003001 name: nervous system lemniscus def: "A bundle or band of sensory nerve fibers." [BIRNLEX:881, Wikipedia:Lemniscus_(anatomy)] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "lemniscus" EXACT [BIRNLEX:881, FMA:83676] synonym: "neuraxis lemniscus" EXACT [FMA:83676] @@ -224526,6 +228431,8 @@ relationship: part_of UBERON:0002316 ! white matter id: UBERON:0003002 name: medial lemniscus def: "Fiber tract arising predominantly from neurons in the nucleus gracilis and nucleus cuneatus in the medulla, projecting to thalamus. Fibers cross in the decussation of the medial lemniscus." [BIRNLEX:887] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "lemniscus medialis" RELATED OMO:0003011 [Wikipedia:Medial_lemniscus] synonym: "Reil's band" RELATED [Wikipedia:Medial_lemniscus] @@ -224567,6 +228474,8 @@ consider: UMLS:C0025979 {source="ncithesaurus:Actin_Filament"} id: UBERON:0003004 name: median raphe nucleus def: "The median raphe nucleus (or superior central nucleus) is composed of polygonal, fusiform and pyriform neurons and exists rostral to the nucleus raphe pontis. One trait of the MRN is its inhibition by lysergic acid diethylamide and psilocin, two serotonin antagonist hallucinogens. The inactivation of the nucleus centralis superior via LSD produces a dose dependent inactivation in the MRN, but not in the raphe pallidus[WP,unvetted]." [https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3248146&group_id=36855, Wikipedia:Median_raphe_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "cell group b8" EXACT [] synonym: "medial raphe nucleus" EXACT [] @@ -224599,6 +228508,8 @@ property_value: editor_note "TODO - The term medial raphe nucleus refers to a co id: UBERON:0003005 name: dorsal longitudinal fasciculus of midbrain def: "Part of dorsal longitudinal fasciculus located in the midbrain tegmentum." [BIRNLEX:893] +subset: human_subset +subset: mouse_subset synonym: "bundle of Schutz of midbrain" EXACT [OBOL:automatic] synonym: "DLFMB" BROAD OMO:0003000 [BIRNLEX:893, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal longitudinal fasciculus of the midbrain" RELATED [NeuroNames:525] @@ -224621,6 +228532,8 @@ relationship: part_of UBERON:0003045 {source="NIFSTD"} ! dorsal longitudinal fas [Term] id: UBERON:0003006 name: dorsal nucleus of lateral lemniscus +subset: human_subset +subset: mouse_subset synonym: "dorsal nucleus of the lateral lemniscus" EXACT [FMA:72483] synonym: "nucleus lemnisci lateralis dorsalis" RELATED OMO:0003011 [NeuroNames:591] synonym: "nucleus lemnisci lateralis pars dorsalis" RELATED OMO:0003011 [NeuroNames:591] @@ -224645,6 +228558,8 @@ is_a: UBERON:0006840 ! nucleus of lateral lemniscus id: UBERON:0003007 name: lateral parabrachial nucleus def: "The lateral parabrachial nucleus induces thirst by stimulating the median preoptic nucleus. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]." [Wikipedia:Lateral_parabrachial_nucleus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "nucleus parabrachialis lateralis" RELATED OMO:0003011 [NeuroNames:588] synonym: "parabrachial nucleus, lateral division" RELATED [NeuroNames:588] @@ -224665,6 +228580,8 @@ relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum id: UBERON:0003008 name: dorsal longitudinal fasciculus of hypothalamus def: "Part of dorsal longitudinal fasciculus located within the hypothalamus." [BIRNLEX:898] +subset: human_subset +subset: mouse_subset synonym: "DLFH" BROAD OMO:0003000 [BIRNLEX:898, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal longitudinal fasciculus of the hypothalamus" RELATED [NeuroNames:432] synonym: "fasciculus longitudinalis dorsalis (hypothalami)" RELATED OMO:0003011 [NeuroNames:432] @@ -224681,6 +228598,8 @@ property_value: external_ontology_notes "classified as tract in FMA" xsd:string [Term] id: UBERON:0003009 name: dorsal tegmental decussation +subset: human_subset +subset: mouse_subset synonym: "chiasma fibrorum proprium tecti" RELATED OMO:0003011 [NeuroNames:523] synonym: "decussatio dorsalis tegmenti" RELATED OMO:0003011 [NeuroNames:523] synonym: "decussatio fibrorum medialium tecti" RELATED OMO:0003011 [NeuroNames:523] @@ -224708,6 +228627,8 @@ relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum [Term] id: UBERON:0003010 name: lateral pes lemniscus +subset: human_subset +subset: mouse_subset synonym: "deep pes lemniscus" EXACT [FMA:72459] synonym: "fasciculi laterales pontis" RELATED OMO:0003011 [NeuroNames:531] synonym: "fussschleife" EXACT OMO:0003011 [FMA:72459, FMA:TA] @@ -224731,6 +228652,8 @@ id: UBERON:0003011 name: facial motor nucleus def: "Nucleus located in the pontine tegmentum containing motor neurons that innervate the muscles of the face. Some neurons that project to the cerebellum have also been identified in some species." [BIRNLEX:903] comment: see comments for facial nucleus. also check ZFA/pons +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "branchiomotor nucleus of facial nerve" EXACT [FMA:54582] @@ -224773,6 +228696,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6b/Gr id: UBERON:0003012 name: flocculonodular lobe def: "The flocculonodular lobe is a lobe of the cerebellum consisting of the nodule and the flocculus. It is closely associated with the vestibulocerebellum. [WP,unvetted]." [Wikipedia:Flocculonodular_lobe] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cerebellum flocculonodular lobe" EXACT [MA:0002965] @@ -224802,6 +228727,8 @@ property_value: function_notes "receives input from the inferior and medial vest id: UBERON:0003013 name: alar central lobule def: "The lobulus centralis is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the alar central lobule. [WP,unvetted]." [Wikipedia:Alar_central_lobule] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "ala centralis" EXACT OMO:0003011 [FMA:72517, FMA:TA] synonym: "ala lobuli centralis" RELATED OMO:0003011 [Wikipedia:Alar_central_lobule] @@ -224819,6 +228746,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8d/Gr [Term] id: UBERON:0003015 name: anterior quadrangular lobule +subset: human_subset +subset: mouse_subset synonym: "anterior crescentic lobule of cerebellum" EXACT [FMA:72516] synonym: "anterior quadrangular lobule of cerebellum" EXACT [FMA:72516] synonym: "anterior quadrangular lobule of cerebellum [H IV et V]" EXACT [FMA:72516] @@ -224838,6 +228767,8 @@ disjoint_from: UBERON:0005350 {source="lexical"} ! lobule simplex id: UBERON:0003016 name: postcommissural fornix of brain def: "The posterior fibers of the fornix, which continue through the hypothalamus to the mammillary bodies; then to the anterior nuclei of thalamus, which project to the cingulate cortex." [https://github.com/obophenotype/uberon/issues/1277, Wikipedia:Fornix_(neuroanatomy)#Structure] +subset: human_subset +subset: mouse_subset synonym: "columna posterior fornicis" RELATED OMO:0003011 [NeuroNames:431] synonym: "fornix (entering Corpus mamillare)" EXACT OMO:0003011 [FMA:62062, FMA:TA] synonym: "fornix postcommissuralis" RELATED OMO:0003011 [NeuroNames:431] @@ -224859,6 +228790,8 @@ id: UBERON:0003017 name: substantia innominata def: "A predominantly gray matter structure of the basal telencephalon defined on the basis of Nissl stain. Caudal to the anterior commissure it lies deep to the globus pallidus and dorsal to the amygdala. Rostral to the anterior commissure it lies deep to the striatum. The more rostral portion contains the basal forebrain nucleus ( Anthoney-1994 ). In the late twentieth century the region containing the substantia innominata was resegmented on the basis of neurochemistry and connectivity to constitute the striatopallidal system ( Heimer-1995 ). In this scheme the caudal portion of substantia innominata is located largely in the ventral pallidum and the rostral portion in the ventral striatum. (from Brain Info)." [BIRNLEX:915] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "innominate substance" EXACT [FMA:61885] synonym: "nucleus of substantia innominata" EXACT [FMA:61885] @@ -224891,6 +228824,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/36/Su [Term] id: UBERON:0003018 name: parvocellular part of ventral posteromedial nucleus +subset: human_subset +subset: mouse_subset synonym: "gustatory nucleus (thalamus)" EXACT [BIRNLEX:917] synonym: "gustatory thalamic nucleus" EXACT [FMA:62207] synonym: "nucleus ventralis posterior medialis thalami, pars parvicellularis" EXACT [BIRNLEX:917] @@ -224926,6 +228861,8 @@ relationship: part_of UBERON:0002945 {source="NIFSTD"} ! ventral posteromedial n [Term] id: UBERON:0003019 name: oral part of ventral posterolateral nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus lateralis intermedius lateralis" EXACT [BIRNLEX:918] synonym: "nucleus posteroventralis oralis" EXACT [BIRNLEX:918] synonym: "nucleus ventralis intermedius (dewulf)" EXACT [BIRNLEX:918] @@ -224953,6 +228890,8 @@ id: UBERON:0003020 name: subcallosal area def: "The subcallosal area (parolfactory area of Broca, area parolfactoria) is a small triangular field on the medial surface of the hemisphere in front of the subcallosal gyrus, from which it is separated by the posterior parolfactory sulcus; it is continuous below with the olfactory trigone, and above and in front with the cingulate gyrus; it is limited anteriorly by the anterior parolfactory sulcus. [WP,unvetted]." [Wikipedia:Subcallosal_area] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "adolfactory area" EXACT [FMA:61890] synonym: "area paraolfactoria" EXACT OMO:0003011 [FMA:61890, FMA:TA] @@ -224980,6 +228919,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0003021 name: central lobule def: "The central lobule is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the ala lobuli centralis. [WP,unvetted]." [Wikipedia:Central_lobule] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "central lobe of the cerebellum" RELATED [BAMS:CENT] synonym: "central lobule of cerebellum" EXACT [FMA:72519] @@ -225012,6 +228953,8 @@ id: UBERON:0003023 name: pontine tegmentum def: "Dorsal portion of the pons, containing cranial nervee nuclei, ascending and descending tracts and reticular nuclei. It is continuous with the reticular formation of the medulla (Carpenter, A Core Text of Neuroanatomy, 3rd ed, 1985, pg 133)." [BIRNLEX:923] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "dorsal pons" EXACT [] synonym: "dorsal portion of pons" EXACT [FMA:71108] @@ -225047,6 +228990,8 @@ property_value: function_notes "involved in the initiation of REM sleep [Wikiped [Term] id: UBERON:0003024 name: principal part of ventral posteromedial nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus ventralis posteromedialis, pars principalis" RELATED OMO:0003011 [NeuroNames:348] synonym: "nucleus ventralis posteromedialis, pars prinicipalis" EXACT [BIRNLEX:927] synonym: "principal part of the ventral posteromedial nucleus" RELATED [NeuroNames:348] @@ -225064,6 +229009,8 @@ relationship: part_of UBERON:0002945 {source="NIFSTD"} ! ventral posteromedial n id: UBERON:0003025 name: brachium of inferior colliculus def: "The Brachium of inferior colliculus (or inferior brachium) carries auditory afferent fibers from the inferior colliculus of the mesencephalon to the medial geniculate nucleus. [WP,unvetted]." [Wikipedia:Brachium_of_inferior_colliculus] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "brachium colliculi caudalis" RELATED OMO:0003011 [NeuroNames:480] synonym: "brachium colliculi inferioris" RELATED OMO:0003011 [Wikipedia:Brachium_of_inferior_colliculus] @@ -225097,6 +229044,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/29/Hu [Term] id: UBERON:0003026 name: limitans nucleus +subset: human_subset +subset: mouse_subset synonym: "Lim" BROAD OMO:0003000 [BIRNLEX:931, NIFSTD:NeuroNames_abbrevSource] synonym: "limitans thalamic nucleus" EXACT [BIRNLEX:931] synonym: "nucleus limitans" EXACT [BIRNLEX:931] @@ -225118,6 +229067,8 @@ id: UBERON:0003027 name: cingulate cortex def: "The cingulate cortex is a part of the brain situated in the medial aspect of the cortex. It is extended from the corpus callosum below to the cingulate sulcus above, at least anteriorly. [WP,unvetted]." [Wikipedia:Cingulate_cortex] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "cingulate neocortex" EXACT [DHBA:10277] synonym: "gyrus cingulatus" RELATED OMO:0003011 [Wikipedia:Cingulate_cortex] @@ -225141,6 +229092,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gr id: UBERON:0003028 name: commissure of inferior colliculus def: "A commissure that is part of a inferior colliculus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "caudal colliculus commissure" EXACT [OBOL:automatic] synonym: "commissura colliculi inferioris" RELATED OMO:0003011 [NeuroNames:481] synonym: "commissura colliculorum caudalium" RELATED OMO:0003011 [NeuroNames:481] @@ -225175,6 +229128,8 @@ relationship: part_of UBERON:0001946 ! inferior colliculus id: UBERON:0003029 name: stria terminalis def: "White matter structure in the brain consisting of fibers running along the lateral margin of the ventricular surface of the thalamus. The stria terminalis covers the thalamostriate vein, marking a line of separation between the thalamus and the caudate nucleus as seen upon gross dissection of the ventricles of the brain, viewed from the superior aspect. The stria terminalis extends from the region of the interventricular foramen to the temporal horn of the lateral ventricle, carrying fibers from the amygdala to the septal, hypothalamic, and thalamic areas of the brain. It also carries fibers projecting from these areas back to the amygdala. (Wikipedia:Stria_terminalis)." [BIRNLEX:937] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "fibrae striae terminalis" RELATED OMO:0003011 [NeuroNames:286] synonym: "fovilles fasciculus" RELATED [BTO:0004616] @@ -225206,6 +229161,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ed/Gr [Term] id: UBERON:0003030 name: posterior nucleus of thalamus +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "caudal thalamic nucleus" RELATED [TAO:0000325] synonym: "nucleus posterior thalami" EXACT [BIRNLEX:939] @@ -225233,6 +229190,8 @@ relationship: part_of UBERON:0002709 {source="FMA", source="NIFSTD"} ! posterior id: UBERON:0003031 name: submedial nucleus of thalamus def: "Thalamic nucleus separated from the ventromedial part of the mediodorsal nucleus of the thalamus by the internal medullary lamina (Paxinos The rat nervous system 2nd ed, Academic Press, 1995)." [BIRNLEX:946] +subset: human_subset +subset: mouse_subset synonym: "gelatinosus thalamic nucleus" EXACT [FMA:62223] synonym: "nucleus submedialis thalami" EXACT OMO:0003011 [FMA:62223, FMA:TA] synonym: "nucleus submedius thalami" EXACT [BIRNLEX:946] @@ -225260,6 +229219,8 @@ relationship: part_of UBERON:0002709 {source="FMA"} ! posterior nuclear complex [Term] id: UBERON:0003033 name: suprageniculate nucleus of thalamus +subset: human_subset +subset: mouse_subset synonym: "nucleus suprageniculatus" EXACT [BIRNLEX:953] synonym: "SG" BROAD OMO:0003000 [BIRNLEX:953, NIFSTD:NeuroNames_abbrevSource] synonym: "suprageniculate nucleus" EXACT [FMA:62222] @@ -225283,6 +229244,8 @@ relationship: mutually_spatially_disjoint_with UBERON:0002983 {source="ABA"} ! l [Term] id: UBERON:0003034 name: central dorsal nucleus of thalamus +subset: human_subset +subset: mouse_subset synonym: "CD" BROAD OMO:0003000 [BIRNLEX:956, NIFSTD:NeuroNames_abbrevSource] synonym: "central dorsal nucleus" EXACT [FMA:62169, http://uri.neuinfo.org/nif/nifstd/birnlex] synonym: "central dorsal nucleus of thalamus" EXACT [DHBA:13331] @@ -225312,6 +229275,8 @@ consider: FMA:72547 [Term] id: UBERON:0003036 name: central lateral nucleus +subset: human_subset +subset: mouse_subset synonym: "central lateral nucleus of thalamus" EXACT [FMA:62170] synonym: "central lateral nucleus of the thalamus" RELATED [NeuroNames:320] synonym: "central lateral thalamic nucleus" EXACT [FMA:62170] @@ -225345,6 +229310,8 @@ id: UBERON:0003037 name: septum def: "A wall, dividing a cavity or structure into smaller ones[WP]." [Wikipedia:Septum] comment: general anatomical term in FMA +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "septa" EXACT OMO:0003004 [] xref: AAO:0011127 @@ -225359,6 +229326,8 @@ id: UBERON:0003038 name: thoracic spinal cord def: "The thoracic nerves are the spinal nerves emerging from the thoracic vertebrae. [WP,unvetted]." [Wikipedia:Thoracic_spinal_cord] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "pars thoracica medullae spinalis" EXACT OMO:0003011 [FMA:71167, FMA:TA] synonym: "segmenta thoracica medullae spinalis [1-12]" EXACT OMO:0003011 [FMA:71167, FMA:TA] @@ -225386,6 +229355,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/68/Gr id: UBERON:0003039 name: anterior commissure anterior part def: "The horseshoe-shaped tract that connects the two olfactory bulbs." [MP:0010859] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior commissure olfactory limb" RELATED [BAMS:aco] synonym: "anterior commissure pars anterior" EXACT [MP:0010859] @@ -225424,6 +229395,8 @@ name: central gray substance of midbrain def: "Periaqueductal gray (PAG; also called the 'central gray') is the gray matter located around the cerebral aqueduct within the midbrain. It plays a role in the descending modulation of pain and in defensive behaviour. The ascending pain and temperature fibers of the spinothalamic tract also send information to the PAG via the spinomesencephalic tract. The spinomesencephalic tract is so-named because the fibers originate in the spine and terminate in the mesencephalon, another name for the midbrain, the part of the brain in which the PAG resides. [WP,unvetted]." [http://sourceforge.net/p/obo/mouse-anatomy-requests/40/, Wikipedia:Periaqueductal_gray] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "anulus aquaeductus" RELATED OMO:0003011 [NeuroNames:510] @@ -225473,7 +229446,6 @@ xref: SCTID:369233003 xref: TAO:0000518 xref: UMLS:C0228398 {source="BIRNLEX:973"} xref: Wikipedia:Periaqueductal_gray -xref: ZFA:0000518 is_a: UBERON:0019267 ! gray matter of midbrain is_a: UBERON:0035011 ! central gray substance intersection_of: UBERON:0035011 ! central gray substance @@ -225497,6 +229469,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn id: UBERON:0003041 name: trigeminal nerve fibers def: "A nerve fiber that is part of a trigeminal nerve." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "central part of trigeminal nerve" EXACT [FMA:72501] synonym: "fibrae nervi trigemini" RELATED OMO:0003011 [NeuroNames:607] synonym: "trigeminal nerve fibers" EXACT [FMA:72501] @@ -225515,6 +229489,8 @@ relationship: part_of UBERON:0001645 ! trigeminal nerve id: UBERON:0003043 name: posterior part of anterior commissure def: "The major forebrain commissure that connects the two temporal lobes of the cortex." [MP:0010860] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior commissure pars posterior" EXACT [MP:0010860] synonym: "anterior commissure temporal limb" EXACT [MP:0008230] @@ -225549,6 +229525,8 @@ relationship: part_of UBERON:0000935 ! anterior commissure id: UBERON:0003044 name: uncinate fasciculus def: "Pathway arising from the fastigial nucleus to the vestibular nuclei, reticular formation, motor neurons of brainstem and cervical spinal cord (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed., 2005, pg 261)." [BIRNLEX:983] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "cerebellospinal tract" RELATED [NeuroNames:597] synonym: "cerebral uncinate fasciculus" EXACT [FMA:77636] @@ -225588,6 +229566,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gr id: UBERON:0003045 name: dorsal longitudinal fasciculus def: "A fiber bundle containing fibers from nuclei of the hypothalamus that project to the dorsal tegmental nucleus and other regions of the midbrain and the pons, as well as fibers originating in the pontine reticular formation and the medullary reticular formation that project to the thalamus and other regions of the forebrain (Carpenter-83). In NeuroNames it is a composite structure consisting of the dorsal longitudinal fasciculus of hypothalamus, the dorsal longitudinal fasciculus of midbrain, the dorsal longitudinal fasciculus of pons and the dorsal longitudinal fasciculus of medulla. (NeuroNames)." [BIRNLEX:986] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "accessory cochlear nucleus" RELATED [NeuroNames:722] @@ -225620,6 +229600,8 @@ is_a: UBERON:0005838 ! fasciculus of brain id: UBERON:0003046 name: ventral acoustic stria def: "White matter structure containing fibers arising from neurons in the cochlear nuclear complex." [BIRNLEX:991] +subset: human_subset +subset: mouse_subset synonym: "anterior acoustic stria" EXACT [FMA:72498] synonym: "stria cochlearis anterior" EXACT OMO:0003011 [FMA:72498, FMA:TA] synonym: "striae acusticae ventralis" RELATED OMO:0003011 [NeuroNames:604] @@ -225674,6 +229656,8 @@ name: olfactory placode def: "A thick plate of cells derived from the neural ectoderm in the head region of the embryo that develops into the olfactory region of the nasal cavity." [Wikipedia:Nasal_placode, XAO:0000005] comment: Olfactory placodes are the only ectodermal placodes to produce glia, a cell type typically derived from neural crest // Note that NBK53171 classifies this as non-neurogenic subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -225705,6 +229689,8 @@ id: UBERON:0003051 name: ear vesicle alt_id: UBERON:0004373 def: "An epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]." [MP:0009806, Wikipedia:Otic_vesicle] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "acoustic vesicle" RELATED [VHOG:0001148] @@ -225746,6 +229732,8 @@ property_value: homology_notes "The inner ear develops embryonically in all vert id: UBERON:0003052 name: midbrain-hindbrain boundary def: "The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate." [GO:0021555] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -225786,6 +229774,8 @@ id: UBERON:0003053 name: ventricular zone def: "Proliferative region that is part of the ventricular system." [ZFA:0001083] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "brain ventricular zone" EXACT [MA:0000819] synonym: "ventricular zone of brain" EXACT [] @@ -225814,6 +229804,8 @@ id: UBERON:0003054 name: roof plate alt_id: UBERON:0003298 def: "A single row of glia at the dorsal midline of the developing neural tube along the entire anterior-posterior axis. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells." [GO:0021509, PMID:15378040] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -225847,6 +229839,8 @@ property_value: external_definition "Multi-tissue structure that is the dorsal-m id: UBERON:0003055 name: periderm def: "The outermost layer (or layers, depending on the species) of embryonic skin, essential for the development of the epidermis and establishment of the barrier functions. The periderm derives from the outer layer of the ectoderm." [ISBN:9780878932504, PMID:25133425, PMID:35582825] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "enveloping layer" RELATED [ZFA:0001185] @@ -225880,6 +229874,8 @@ property_value: taxon_notes "In mice, the periderm is bilayered. It consists of id: UBERON:0003056 name: pre-chordal neural plate def: "The portion of neural plate anterior to the mid-hindbrain junction." [XB:curator] +subset: human_subset +subset: mouse_subset synonym: "anterior neural plate" RELATED [] xref: AAO:0011084 xref: TAO:0007016 @@ -225896,6 +229892,8 @@ property_value: homology_notes "(...) at some stage of its development, every ch id: UBERON:0003057 name: chordal neural plate def: "The portion of neural plate posterior to the mid-hindbrain junction." [XB:curator] +subset: human_subset +subset: mouse_subset synonym: "posterior neural plate" RELATED [] xref: TAO:0007017 xref: VHOG:0001201 @@ -225913,6 +229911,8 @@ def: "The hypochord is a transient rod-like structure in the embryos of fish, la comment: Unlike in frogs and axolotl, the hypochord does not appear to be endodermally derived[ZFA]. near metamorphosis the hypochord fuses to the coccyx, thereby forming the urostyle[AAO] subset: dubious_grouping subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "ipochord" EXACT [XAO:0000056] synonym: "subnotochordal rod" EXACT [GO:0055016, PMID:10648245] xref: AAO:0000733 @@ -225934,6 +229934,8 @@ id: UBERON:0003059 name: presomitic mesoderm def: "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form." [ZFIN:curator] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "presumptive somite mesoderm" RELATED [] synonym: "PSM" RELATED [] @@ -225966,6 +229968,8 @@ id: UBERON:0003060 name: pronephric duct def: "In mammals, the pronephric duct is the predecessor of the Wolffian duct[WP]." [Wikipedia:Pronephric_duct] comment: The pronephric duct collects the filtrate from the pronephric tubules and opens to the exterior of the pronephric kidney[GOC:mtg_kidney_jan10, PMID:15647339, XAO:0000063, ZFA:0000150] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "archinephric duct" RELATED [VHOG:0000082] synonym: "ductus pronephricus" RELATED OMO:0003011 [Wikipedia:Pronephric_duct] @@ -225993,6 +229997,8 @@ id: UBERON:0003061 name: blood island def: "Blood islands are structures in the developing embryo which lead to many different parts of the circulatory system. They primarily derive from plexuses formed from angioblasts. Within them, vacuoles appear through liquefaction of the central part of the syncytium into plasma. The lumen of the blood vessels thus formed is probably intracellular. The flattened cells at the periphery form the endothelium. The nucleated red blood corpuscles develop either from small masses of the original angioblast left attached to the inner wall of the lumen or directly from the flat endothelial cells. In either case the syncytial mass thus formed projects from and is attached to the wall of the vessel. Such a mass is known as a blood island and hemoglobin gradually accumulates within it. Later the cells on the surface round up, giving the mass a mulberry-like appearance. Then the red blood cells break loose and are carried away in the plasma. Such free blood cells continue to divide. Blood islands have been seen in the area vasculosa in the omphalomesenteric vein and arteries, and in the dorsal aorta[WP, unvetted]." [Wikipedia:Blood_island_of_umbilical_vesicle] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -226030,6 +230036,8 @@ name: primitive knot alt_id: UBERON:0004018 def: "Organizer for gastrulation in vertebrates. The primitive knot starts as a regional knot of cells that forms on the blastodisc immediately anterior to where the outer layer of cells will begin to migrate inwards - an area known as the primitive streak. Posterior to the node is the primitive pit, where the cells of the epiblast (the upper layer of embryonic cells) initially begin to invaginate. This invagination expands posteriorly into the primitive groove as the cells layers continue to move into the space between the embryonic cells and the yolk. This differentiates the embryo into the germ layers - endoderm, mesoderm, and ectoderm. The primitive knot migrates posteriorly as gastrulation proceeds, eventually being absorbed into the tail bud.[WP]. the regional thickening of cells at the rostral tip of the vertebrate primitive streak through which gastrulating cells migrate anteriorally to form tissues in the future head and neck; this region organizes the formation of the three embryonic layers and establishes the longitudinal axis and the polarity of the embryo[MP]." [MP:0004066, Wikipedia:Primitive_knot, Wikipedia:Regional_specification#Dorsal.2Fventral_axis_.26_organizer] subset: early_development +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "DMZ" RELATED [VHOG:0000598] @@ -226082,6 +230090,8 @@ id: UBERON:0003063 name: prechordal plate alt_id: UBERON:0004881 def: "A horseshoe-shaped thickening of the endoderm at the cranial (rostral) end of the primitive streak formed by the involution of Spemann's organizer cells which, together with the notochord, induces the formation of the neural plate from the overlying ectodermal cells and contributes mesodermal type cells to the surrounding tissue." [ISBN:0838580343, MP:0004387] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -226109,6 +230119,8 @@ property_value: homology_notes "There are two opposing models that can potential id: UBERON:0003064 name: intermediate mesoderm def: "The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads." [GOC:curators, Wikipedia:Intermediate_mesoderm] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -226146,6 +230158,8 @@ id: UBERON:0003065 name: ciliary marginal zone def: "Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth.[Wehman et al, 2005]." [ZFIN:curator] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "circumferential germinal zone" RELATED [] synonym: "CMZ" RELATED [] @@ -226169,6 +230183,8 @@ property_value: homology_notes "The retina of all vertebrates develops via simil id: UBERON:0003066 name: pharyngeal arch 2 def: "The second pharyngeal arch will form the hyoid apparatus. The cranial neural crest cells that populate the second pharyngeal arch emerge primarily from rhombomere 4 and will form skeletal elements." [https://github.com/obophenotype/uberon/issues/258, PMID:12784288, ZFIN:yb] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -226209,6 +230225,8 @@ id: UBERON:0003067 name: dorsolateral placode def: "Lateral neurogenic placodes positioned dorsal of the epibranchial placodes." [ZFIN:curator] comment: The only remaining dorsolateral placode in land vertebrates is the otic/octaval placode +subset: human_subset +subset: mouse_subset synonym: "dorsolateral placodes" EXACT OMO:0003004 [ZFA:0001310] xref: TAO:0001310 xref: VHOG:0000103 @@ -226223,6 +230241,8 @@ id: UBERON:0003068 name: axial mesoderm def: "The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord." [GO:0048318, Wikipedia:Chordamesoderm] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "chordamesoderm" RELATED [Wikipedia:Chordamesoderm] xref: AAO:0011017 @@ -226245,6 +230265,8 @@ id: UBERON:0003069 name: otic placode def: "A cranial placode which, once specified, invaginates to form an otic cup, which eventually separates from the surface ectoderm to form the otic vesicle or otocyst, a rounded structure without appar- ent polarity. As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII[NBK]." [NCBIBook:NBK53175, Wikipedia:Otic_placode] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -226278,6 +230300,8 @@ id: UBERON:0003070 name: trigeminal placode complex def: "A neurogenic placode that arises at the level of the midbrain-hindbrain boundary and develops into a trigeminal ganglion." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/693, PMID:22512454] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "profundus placode" RELATED INCONSISTENT [ISBN:0471888893] synonym: "profundus V placode" RELATED INCONSISTENT [ISBN:0471888893] synonym: "trigeminal placode" EXACT [EHDAA2:0004209, VHOG:0000109, XAO:0000225, ZFA:0000162] @@ -226305,6 +230329,8 @@ name: eye primordium alt_id: UBERON:0005060 def: "Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles." [GO:0046619, ZFA:0000570] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "eye anlage" RELATED [XAO:0000227] synonym: "eye field" RELATED [] synonym: "eye placode" EXACT [OBOL:automatic] @@ -226338,6 +230364,8 @@ property_value: external_ontology_notes "TODO - check that GO's optic placode is id: UBERON:0003072 name: optic cup def: "Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye[ZFA]. double walled structured formed by expansion and invagination of the distal end of the optic vesicle that develops into the pigmented and sensory layers of the retina while the mouth of the optic cup eventually forms the pupil of the eye[MP]." [MP:0004269, Wikipedia:Optic_cup_(embryology), ZFA:0001202] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "eye cup" RELATED [] @@ -226367,6 +230395,8 @@ id: UBERON:0003073 name: lens placode def: "A thickened portion of ectoderm which serves as the precursor to the lens. SOX2 and Pou2f1 are involved in its development[WP]." [Wikipedia:Lens_placode, ZFIN:curator] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -226403,6 +230433,8 @@ property_value: homology_notes "(...) an essentially similar sequence of events id: UBERON:0003074 name: mesonephric duct def: "Paired organ that connects the primitive kidney Wolffian body (or mesonephros) to the cloaca and serves as the anlage for certain male reproductive organs. the Wolffian duct is what remains of the pronephric duct after the atrophy of the pronephros[WP]. In Zebrafish: Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber[ZFA]." [https://github.com/obophenotype/uberon/issues/28, Wikipedia:Mesonephric_duct, ZFIN:curator] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -226443,6 +230475,8 @@ property_value: homology_notes "(...) in all craniates, the archinephric duct de id: UBERON:0003075 name: neural plate def: "A region of embryonic ectodermal cells that lie directly above the notochord. During neurulation, they change shape and produce an infolding of the neural plate (the neural fold) that then seals to form the neural tube[XAO]. The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium[ZFA]." [ISBN:0815318960, OMD:neural+plate, Wikipedia:Neural_plate, ZFIN:curator] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -226482,6 +230516,8 @@ property_value: homology_notes "(...) at some stage of its development, every ch [Term] id: UBERON:0003076 name: posterior neural tube +subset: human_subset +subset: mouse_subset xref: AAO:0011082 xref: TAO:0007037 xref: VHOG:0001383 @@ -226498,6 +230534,8 @@ id: UBERON:0003077 name: paraxial mesoderm def: "The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube[GO]." [GO:0048339, https://github.com/obophenotype/uberon/issues/30] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "mesoderma paraxiale" RELATED OMO:0003011 [Wikipedia:Paraxial_mesoderm] @@ -226534,6 +230572,8 @@ id: UBERON:0003078 name: epibranchial placode def: "Focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches and that produce the neuroblasts that migrate and condense to form the distal cranial ganglia." [VHOG:0000117] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "epibranchial placodes" EXACT OMO:0003004 [ZFA:0001294] synonym: "ventrolateral placode" RELATED [ISBN:0471888893] xref: AAO:0011036 @@ -226559,6 +230599,8 @@ name: floor plate def: "The specialized glial structure (non-neuronal cells) situated at the ventral midline of the embryonic neural tube; this structure spans the anteroposterior axis from the midbrain to the tail regions, separating the left and right basal plates of the developing neural tube, and serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube." [GO:0021508, MGI:anna, PMID:15738958, Wikipedia:Floor_plate] comment: "A structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube." {source="Wikipedia:Floor_plate"} subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -226592,6 +230634,8 @@ property_value: external_ontology_notes "although this is classically defined as [Term] id: UBERON:0003080 name: anterior neural tube +subset: human_subset +subset: mouse_subset xref: AAO:0011012 xref: TAO:0007038 xref: VHOG:0001384 @@ -226609,6 +230653,8 @@ id: UBERON:0003081 name: lateral plate mesoderm alt_id: UBERON:0006258 def: "Portion of the middle of the three primary germ layers of the embryo that resides on the periphery of the embryo, is continuous with the extra-embryonic mesoderm, splits into two layers enclosing the intra-embryonic coelom, and gives rise to body wall structures[MP]." [MP:0010117, Wikipedia:Lateral_plate_mesoderm] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "lateral mesoderm" EXACT [GO:0048368] @@ -226647,6 +230693,8 @@ property_value: homology_notes "A ventrolateral zone of amphioxus mesoderm grows id: UBERON:0003082 name: myotome def: "A transitional population of migrating mesenchymal cells that derive from somites and that will become muscle cells." [AEO:0001018] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -226688,6 +230736,8 @@ id: UBERON:0003083 name: trunk neural crest def: "Trunk portion of the neural crest. The trunk neural crest lies between the vagal and sacral neural crest and gives rise to two groups of cells. One group migrates dorsolateral and populates the skin, forming pigment cells and the other migrates ventrolateral through the anterior sclerotome to become the epinephrine-producing cells of the adrenal gland and the neurons of the sympathetic nervous system. Some cells remain in the sclerotome to form the dorsal root ganglia [Wikipedia]." [ISBN:0815318960, Wikipedia:Trunk_neural_crest] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "TNC" EXACT OMO:0003000 [XAO:0000319] synonym: "trunk crest" RELATED [] @@ -226711,6 +230761,8 @@ property_value: homology_notes "We conclude this section by listing some of the id: UBERON:0003084 name: heart primordium def: "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline to form the heart rudiment or cone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "cardiac field" RELATED [ZFA:0000028] synonym: "fused heart primordium" RELATED [] @@ -226736,6 +230788,8 @@ id: UBERON:0003085 name: ventral aorta def: "The ventral aorta is a blood vessel in a single-pass circulatory system that carries de-oxygenated blood from the heart to the gills. In a single-pass circulatory system blood passes once through the heart to supply the body once[GO]." [GO:0035908] comment: Taxon notes (via vHOG): "When vertebrates first appeared, they must have possessed a ventral and dorsal aorta with aortic arches between them." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.620. // in Reptiles, splits to form bases of 3 arteries: left aortic arch, right aortic arch and pulmonary trunk. In birds, the right systemic arch becomes predominant, the left never fully develops [Kardong] +subset: human_subset +subset: mouse_subset subset: uberon_slim xref: AAO:0010412 xref: BTO:0004674 @@ -226754,6 +230808,7 @@ id: UBERON:0003086 name: caudal artery def: "Extension of the dorsal aorta in the tail." [Wikipedia:Caudal_artery, ZFIN:curator] subset: efo_slim +subset: mouse_subset subset: uberon_slim synonym: "CA" RELATED [] xref: AAO:0011023 @@ -226781,6 +230836,8 @@ name: anterior cardinal vein alt_id: UBERON:0009770 def: "One of the the two paired cardinal veins draining the cephalic part of the body." [ISBN:0073040584, MP:0004784, Wikipedia:Anterior_cardinal_vein] comment: contribute to the formation of the internal jugular veins and together with the common cardinal vein form the superior vena cava. In an anastomosis by anterior cardinal veins, the left brachiocephalic vein is produced[WP] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "ACV" RELATED [] @@ -226811,6 +230868,7 @@ id: UBERON:0003088 name: caudal vein def: "Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterial cardinal vein in the posterior trunk. Kimmel et al, 1995.[ZFIN]." [ZFIN:curator] subset: efo_slim +subset: mouse_subset subset: uberon_slim synonym: "CV" RELATED [] xref: AAO:0011025 @@ -226831,6 +230889,8 @@ property_value: external_definition "Vein in the tail returning blood from the t id: UBERON:0003089 name: sclerotome def: "Ventral somitic compartment that is a precursor of the axial skeleton[XAO]. Sclerotomes eventually differentiate into the vertebrae and most of the skull. The caudal (posterior) half of one sclerotome fuses with the rostral (anterior) half of the adjacent one to form each vertebra. From their initial location within the somite, the sclerotome cells migrate medially towards the notochord. These cells meet the sclerotome cells from the other side to form the vertebral body. From this vertebral body, sclerotome cells move dorsally and surround the developing spinal cord, forming the vertebral arch[WP]." [https://github.com/obophenotype/uberon/issues/316, Wikipedia:Sclerotome, XB:curator] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -226880,6 +230940,8 @@ property_value: homology_notes "The mechanosensory lateral line system is widely id: UBERON:0003091 name: thyroid primordium def: "The initial thyroid precursor, the thyroid primordium, starts as a simple midline thickening and develops to form the thyroid diverticulum. This structure is initially hollow, although it later solidifies and becomes bilobed. The 2 lobes are located on either side of the midline and are connected via an isthmus." [http://emedicine.medscape.com/article/845125-overview] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "thyroid primordia" RELATED OMO:0003004 [ZFA:0001081] xref: AAO:0011106 @@ -226906,6 +230968,8 @@ property_value: taxon_notes "In all vertebrates the thyroid arises from the vent id: UBERON:0003092 name: ultimobranchial body def: "An outpocketing of one of the caudal pharyngeal pouches that is comprised on calcitonin-producing parafollicular cells." [ISBN:0073040584, MP:0003955, Wikipedia:Ultimopharyngeal_body] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -227040,6 +231104,8 @@ property_value: axiom_lost_from_external_ontology "is_a median fin" xsd:string { id: UBERON:0003098 name: optic stalk def: "The narrow, proximal portion of the optic vesicle which connects the embryonic eye and forebrain." [ISBN:0-914294-08-3, MP:0004268] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -227070,6 +231136,8 @@ id: UBERON:0003099 name: cranial neural crest def: "Neural crest cells (NCCs) originating in the anterior part of the developing embryo and residing between the mid-diencephalon and the forming hindbrain; cranial NCCs migrate dorsolaterally to form the craniofacial mesenchyme that differentiates into various craniofacial cartilages and bones, cranial neurons, glia, and connective tissues of the face; these cells enter the pharyngeal pouches and arches where they give rise to thymic cells, bones of the middle ear and jaw (mandible), and the odontoblasts of the tooth primordia; like their counterparts in the trunk, cranial NCCs also contribute to the developing peripheral nervous system, along with the pigmented cell (i.e. melanocyte) lineage." [MGI:anna] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core synonym: "cephalic neural crest" EXACT [EMAPA:16091] @@ -227101,6 +231169,8 @@ property_value: homology_notes "We conclude this section by listing some of the id: UBERON:0003100 name: female organism def: "Gonochoristic organism that can produce female gametes." [CARO:0000028] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "female" RELATED [TAO:0000303] @@ -227124,6 +231194,8 @@ relationship: mutually_spatially_disjoint_with UBERON:0003101 ! male organism id: UBERON:0003101 name: male organism def: "Gonochoristic organism that can produce male gametes." [CARO:0000027] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "male" RELATED [TAO:0000242] @@ -227146,6 +231218,8 @@ is_a: UBERON:0000468 ! multicellular organism id: UBERON:0003102 name: surface structure def: "Anatomical structure that overlaps the outer epithelial layer and is adjacent to the space surrounding the organism." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/24] +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "anatomical surface feature" EXACT [EHDAA2:0003010] synonym: "surface feature" RELATED [] @@ -227171,6 +231245,8 @@ property_value: external_definition "Organism subdivision which is the collectio id: UBERON:0003103 name: compound organ def: "Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types." [CARO:0000024] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: upper_level synonym: "organ" RELATED [] @@ -227193,6 +231269,8 @@ property_value: curator_notes "this class was introduced for consistency with CA id: UBERON:0003104 name: mesenchyme def: "Portion of tissue composed of mesenchymal cells (motile cells that develop from epthelia via an epithelial to mesenchymal transition) and surrounding extracellular material. Mesenchyme has different embryological origins in different metazoan taxa - in many invertebrates it derives in whole or part from ectoderm. In vertebrates it derives largely from mesoderm, and sometimes the terms are used interchangeably, e.g. lateral plate mesoderm/mesenchyme." [https://archive.org/details/invertebratesnde00brus/page/n240/mode/2up, https://en.wikipedia.org/wiki/Mesenchyme, https://github.com/obophenotype/uberon/issues/1641] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -227232,6 +231310,8 @@ id: UBERON:0003105 name: dorsal lateral plate region def: "Embryonic tissue derived from the mesodermal germ layer that contains the dorsal aorta, genital ridges and mesonephros. This region is the first autonomous embryonic site for definitive haematopoiesis." [PMID:29358215] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "AGM region" RELATED [XAO:0003051] synonym: "aorta-gonad-mesonephros region" RELATED [PMID:16480451] @@ -227251,6 +231331,8 @@ id: UBERON:0003106 name: urostyle def: "In teleosts: Anatomical cluster that is the result of fusion of preural centrum 1 with one or more adjacent ural centra[AAO]; Rodlike caudal bony structure unique to anurans that lies within a compartment formed by the elongated, anteriorly oriented pelvic girdle. The urostyle is formed by the fusion of the coccyx and the hypochord[AAO]." [AAO:0000732, TAO:0000158] comment: Grouping with AAO dubious +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "compound caudal centrum" RELATED [TAO:0000158] synonym: "compound centrum" RELATED [] @@ -227275,6 +231357,8 @@ property_value: taxon_notes "In zebrafish, it is composed of preural vertebra 1 id: UBERON:0003107 name: Meckel's cartilage def: "Meckel's cartilage is the bilaterally paired, rod-like, cartilaginous ventral component of the lower jar, or ventral mandibular arch. It is typically resorbed in adults." [PMID:3693112, Wikipedia:Meckel's_cartilage] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -227325,6 +231409,8 @@ property_value: editor_note "requires review, possible split; TAO/ZFA structure id: UBERON:0003109 name: parapophysis def: "Endochondral bone that forms from a lateral outgrowth of the basiventral arcualia and connects the rib with the vertebral centrum[TAO]. A lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. ZFA: They can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops." [ZFIN:curator] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "lateral process of basiventral" EXACT [ZFA:0001362] synonym: "parapophyses" EXACT OMO:0003004 [TAO:0001362] @@ -227346,6 +231432,8 @@ property_value: external_definition "Projections on each side of the vertebra fr [Term] id: UBERON:0003110 name: otic region +subset: human_subset +subset: mouse_subset synonym: "cranial vault" RELATED [ZFA:0000189] xref: AAO:0010208 xref: TAO:0000189 @@ -227363,6 +231451,8 @@ property_value: external_ontology_notes "UBERONREF:0000007 has this as a syn for id: UBERON:0003111 name: sphenoid region def: "Anatomical cluster that forms the floor and sidewalls of the middle part of the cranium." [TAO:0000290, UBERONREF:0000007] +subset: human_subset +subset: mouse_subset xref: AAO:0010207 xref: TAO:0000290 xref: XAO:0003174 @@ -227377,6 +231467,8 @@ id: UBERON:0003112 name: olfactory region def: "Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the olfactory organ." [TAO:0000351] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "ethmoid region" RELATED [ZFA:0000351] xref: AAO:0010206 xref: EFO:0003525 @@ -227394,6 +231486,8 @@ property_value: external_definition "Anatomical cluster that is located in the a id: UBERON:0003113 name: dermatocranium def: "Subdivision of skeleton that includes all dermal bones in the cranial skeleton[ZFA,modified]." [Wikipedia:Skull_roof, ZFA:0000863] +subset: human_subset +subset: mouse_subset synonym: "dendrocranium" EXACT [TAO:0000863] synonym: "dermal bone cranium" RELATED [ZFA:0000863] synonym: "dermal part of skull" RELATED [] @@ -227424,6 +231518,8 @@ property_value: external_definition "Anatomical cluster that is part of the cran id: UBERON:0003114 name: pharyngeal arch 3 def: "The third branchial arch contributes to the development of the hyoid bone, stylopharyngeus muscle, inferior parathyroid gland, and thymus." [MP:0006339] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "3rd arch" RELATED [EHDAA2:0000069] @@ -227456,6 +231552,8 @@ property_value: pharyngeal_arch_number "3" xsd:nonNegativeInteger id: UBERON:0003115 name: pharyngeal arch 4 def: "Contributes to development of the cartilage of the larynx, laryngeal, pharyngeal, and soft palate muscles, superior parathyroid gland, and C-cells of the thymus." [MP:0006340] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -227489,6 +231587,8 @@ property_value: pharyngeal_arch_number "4" xsd:nonNegativeInteger [Term] id: UBERON:0003116 name: pharyngeal arch 5 +subset: human_subset +subset: mouse_subset synonym: "5th pharyngeal arch" RELATED [VHOG:0001204] synonym: "5th visceral arch" RELATED [VHOG:0001204] synonym: "branchial arch 3" RELATED SENSU [AAO:0010367, XAO:0000451, ZFA:0001608] @@ -227516,6 +231616,8 @@ id: UBERON:0003117 name: pharyngeal arch 6 alt_id: UBERON:0004349 def: "The 6th pharyngeal arch. contributes to the development of the sternocleidomastoid and trapezius muscles." [MP:0006347] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "6th arch" EXACT [EHDAA2:0004075] synonym: "6th pharyngeal arch" RELATED [VHOG:0001205] @@ -227546,6 +231648,8 @@ id: UBERON:0003118 name: pharyngeal arch artery 1 alt_id: UBERON:0004371 def: "The vessels formed within the first pair of branchial arches in embryogenesis." [MP:0010355] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "1st aortic arch artery" RELATED [EMAPA:16685] @@ -227580,6 +231684,8 @@ id: UBERON:0003119 name: pharyngeal arch artery 2 alt_id: UBERON:0004372 def: "The vessels formed within the second pair of branchial arches in embryogenesis." [MP:0010356] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "2nd aortic arch artery" RELATED [EMAPA:16686] @@ -227614,6 +231720,8 @@ id: UBERON:0003120 name: pharyngeal arch artery 3 alt_id: UBERON:0004352 def: "The vessels formed within the third pair of branchial arches in embryogenesis." [MP:0006356] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "3rd aortic arch artery" RELATED [EMAPA:16687] @@ -227649,6 +231757,8 @@ name: pharyngeal arch artery 4 alt_id: UBERON:0004350 def: "The vessels formed within the fourth pair of branchial arches in embryogenesis." [MP:0006354] comment: proximal right subclavian +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "4th aortic arch artery" RELATED [EMAPA:17004] @@ -227681,6 +231791,8 @@ property_value: external_definition "The fourth right arch forms the right subcl id: UBERON:0003122 name: pharyngeal arch artery 5 def: "The vessels formed within the fifth pair of pharyngeal arches in embryogenesis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "AA5" EXACT [ZFA:0005009] synonym: "aortic arch 5" EXACT [ZFA:0005009] @@ -227706,6 +231818,8 @@ id: UBERON:0003123 name: pharyngeal arch artery 6 alt_id: UBERON:0004351 def: "The vessels formed within the sixth pair of branchial arches in embryogenesis." [MP:0006355] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "6th aortic arch artery" RELATED [EMAPA:17005] @@ -227742,6 +231856,8 @@ def: "The outermost extraembryonic membrane of amniotes." [http://orcid.org/0000 comment: This term refers to the amniote structure. It is distinct from the concept of chorion in insects subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "chorion" EXACT [] @@ -227788,6 +231904,8 @@ id: UBERON:0003125 name: vitelline membrane def: "A structure directly adjacent to the outer surface of the plasma membrane of an ovum. It is composed mostly of protein fibers, with protein receptors needed for sperm binding, binding to sperm plasma membrane receptors. The species-specificity between these receptors contributes to prevention of breeding between different species [Wikipedia]. A protective layer around the egg[FBbt]." [Wikipedia:Vitelline_membrane] subset: dubious_grouping +subset: human_subset +subset: mouse_subset synonym: "m. vitellina" RELATED OMO:0003011 [Wikipedia:Vitelline_membrane] synonym: "yolk sac membrane" RELATED [BTO:0001450] synonym: "zona pellucida" RELATED [] @@ -227814,7 +231932,9 @@ name: trachea def: "The trachea is the portion of the airway that attaches to the bronchi as it branches [GO:dph]." [GO:0060438, Wikipedia:Vertebrate_trachea] subset: efo_slim subset: human_reference_atlas +subset: human_subset subset: major_organ +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cartilaginous trachea" EXACT [] @@ -227879,6 +231999,8 @@ id: UBERON:0003128 name: cranium def: "Upper portion of the skull that excludes the mandible (when present in the organism)." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Cranium_(anatomy)] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -227912,6 +232034,8 @@ property_value: terminology_notes "The term cranium can be ambiguous, in that it id: UBERON:0003129 name: skull def: "Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." [http://sourceforge.net/tracker/?func=detail&aid=2962656&group_id=76834&atid=1205376, PMID:11523816, Wikipedia:Skull] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cranial skeleton" RELATED [] @@ -227978,6 +232102,8 @@ id: UBERON:0003133 name: reproductive organ def: "An organ involved in reproduction." [UBERON:xp] subset: functional_classification +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "genital organ" EXACT [] @@ -228004,6 +232130,8 @@ property_value: external_ontology_notes "GO uses genitalia for the singular orga id: UBERON:0003134 name: female reproductive organ def: "A female organ involved in reproduction." [UBERON:xp] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "female organism reproductive organ" EXACT [OBOL:automatic] @@ -228029,6 +232157,8 @@ relationship: part_of UBERON:0003100 ! female organism id: UBERON:0003135 name: male reproductive organ def: "A male organ involved in reproduction." [UBERON:xp] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "male genital" RELATED [WBbt:0008423] @@ -228694,6 +232824,8 @@ consider: UBERON:0010758 id: UBERON:0003209 name: blood nerve barrier def: "Barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier[GO]." [GO:0008065, Wikipedia:Blood-nerve_barrier] +subset: human_subset +subset: mouse_subset synonym: "blood-nerve barrier" EXACT [] xref: MESH:D049428 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Blood-nerve_barrier @@ -228707,6 +232839,8 @@ relationship: part_of UBERON:0001016 ! nervous system id: UBERON:0003210 name: blood-cerebrospinal fluid barrier def: "Barrier in the choroid plexus located in the lateral, third, and fourth brain ventricles that controls the entrance of substances into the cerebrospinal fluid from the blood[MP]." [MP:0006088] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "blood-CSF barrier" EXACT [MP:0006088] is_a: UBERON:0000119 ! cell layer @@ -228734,6 +232868,8 @@ relationship: in_taxon NCBITaxon:6656 ! Arthropoda id: UBERON:0003212 name: gustatory organ def: "Any sense organ that functions in (some) detection of chemical stimulus involved in sensory perception of taste (GO:0050912)." [FBC:auto_generated_definition] +subset: human_subset +subset: mouse_subset synonym: "gustatory organ system organ" EXACT [OBOL:automatic] synonym: "gustatory system organ" EXACT [OBOL:automatic] synonym: "organ of gustatory organ system" EXACT [OBOL:automatic] @@ -228753,6 +232889,8 @@ relationship: part_of UBERON:0001033 ! gustatory system id: UBERON:0003214 name: mammary gland alveolus def: "A sac-like structure that is found in the mature gland[GO]." [GO:0060749] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "alveolus of lactiferous gland" EXACT [OBOL:automatic] synonym: "alveolus of lobe of breast" EXACT [OBOL:automatic] @@ -228780,6 +232918,8 @@ id: UBERON:0003215 name: alveolus def: "Organ part that has the form of a hollow cavity[WP]." [Wikipedia:Alveolus] subset: efo_slim +subset: human_subset +subset: mouse_subset xref: EFO:0002513 xref: FMA:82493 xref: NCIT:C12986 @@ -228792,6 +232932,8 @@ property_value: has_relational_adjective "alveolar" xsd:string id: UBERON:0003216 name: hard palate def: "Anterior portion of the palate consisting of bone and mucous membranes [GO]. The hard palate is formed from bony processes of the maxilla, premaxilla and palatine bone [Kardong]." [GO:0060022, Wikipedia:Hard_palate] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "hard palate" EXACT [] @@ -228817,6 +232959,8 @@ property_value: external_ontology_notes "in FMA this is divided into bony parts id: UBERON:0003217 name: neural lobe of neurohypophysis def: "The posterior pituitary (or neurohypophysis) comprises the posterior lobe of the pituitary gland and is part of the endocrine system. Despite its name, the posterior pituitary gland is not a gland, per se; rather, it is largely a collection of axonal projections from the hypothalamus that terminate behind the anterior pituitary gland. [WP,unvetted]." [Wikipedia:Neurohypophysis#cite_note-1] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "caudal lobe" RELATED [BTO:0000561] @@ -228869,6 +233013,8 @@ property_value: homology_notes "It (the hypophysis) develops embryonically in al id: UBERON:0003218 name: ovary septum def: "Septum that divides the ovary, the basal portion of a carpel or group of fused carpels, that encloses the ovule(s)[GO]." [GO:0080126] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003037 ! septum intersection_of: UBERON:0003037 ! septum intersection_of: part_of UBERON:0000992 ! ovary @@ -228890,6 +233036,8 @@ id: UBERON:0003220 name: metanephric mesenchyme def: "One of the two embryological structures that give rise to the kidney (the other is the ureteric bud). The metanephric blastema mostly develops into nephrons, but can also form parts of the collecting duct system.[WP]. Metanephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the metanephros[GO]." [GO:0072075, Wikipedia:Metanephric_blastema] comment: Genes: The positional specification of the metanephrogenic mesenchyme is negatively regulated by Foxc1 and Foxc2. Next the permanent kidney forming metanephrogenic mesenchyme is specified by Hox11 genes. The competence to respond to ureteric bud inducers is regulated by WT1. GDNF secretion restricted to posterior region by Robo2 and Sprouty1. The receptors for GDNF are synthesized in the nephric ducts and later in ureteric buds [ISBN:9780878932504 "Developmental Biology"] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "metanephric blastema" EXACT [Wikipedia:Metanephric_blastema] synonym: "metanephric mesoderm" EXACT [Wikipedia:Metanephric_blastema] @@ -228920,6 +233068,8 @@ property_value: homology_notes "When the ureteric buds emerge from the nephric d id: UBERON:0003221 name: phalanx def: "Endochondral bones that are often elongate and arranged in rows of articulating elements, and form the visible part of the digits." [VSAO:0000199, Wikipedia:Phalanx_bones] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "digit long bone" EXACT [OBOL:automatic] synonym: "long bone of digit" EXACT [OBOL:automatic] @@ -228952,6 +233102,8 @@ id: UBERON:0003222 name: flexor digitorum superficialis def: "An extrinsic flexor muscle of the fingers at the proximal interphalangeal joints.[WP]." [Wikipedia:Flexor_digitorum_superficialis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "flexor digitorum superficialis muscle" EXACT [Wikipedia:Flexor_digitorum_superficialis_muscle] synonym: "musculus flexor digitorum superficialis" RELATED OMO:0003011 [Wikipedia:Flexor_digitorum_superficialis_muscle] xref: EMAPA:36202 @@ -228969,6 +233121,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/53/Gr id: UBERON:0003224 name: chorion syncytiotrophoblast def: "An extraembryonic structure that develops_from a syncytiotrophoblast and is part of a chorion." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001973 xref: EHDAA:156 is_a: UBERON:0000478 ! extraembryonic structure @@ -228984,6 +233138,8 @@ id: UBERON:0003228 name: supinator muscle def: "A muscle which originates on the distal humerus, inserts on the radius and accomplishes supination (rotation of the wrist)." [Wikipedia:Supinator_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "musculus supinator" RELATED OMO:0003011 [Wikipedia:Supinator_muscle] synonym: "supinator" EXACT [] synonym: "supinator brevus" RELATED DEPRECATED [Wikipedia:Supinator_muscle] @@ -229006,6 +233162,8 @@ property_value: editor_note "TODO - The term 'supinator' can also refer more gen id: UBERON:0003229 name: epithelium of elbow def: "An epithelium that is part of a elbow [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cubital region epithelial tissue" EXACT [OBOL:automatic] synonym: "cubital region epithelium" EXACT [OBOL:automatic] synonym: "elbow epithelial tissue" EXACT [OBOL:automatic] @@ -229028,6 +233186,8 @@ relationship: part_of UBERON:0001461 ! elbow id: UBERON:0003230 name: epithelium of carpal region def: "An epithelium that is part of a wrist [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "carpal region epithelial tissue" EXACT [OBOL:automatic] synonym: "carpal region epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of carpal region" EXACT [OBOL:automatic] @@ -229048,6 +233208,8 @@ relationship: part_of UBERON:0004452 ! carpal region id: UBERON:0003231 name: epithelium of hip def: "An epithelium that is part of a hip [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of hip" EXACT [OBOL:automatic] synonym: "epithelial tissue of hip region" EXACT [OBOL:automatic] synonym: "epithelial tissue of regio coxae" EXACT [OBOL:automatic] @@ -229074,6 +233236,8 @@ relationship: part_of UBERON:0001464 ! hip id: UBERON:0003232 name: epithelium of knee def: "An epithelium that is part of a knee [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of knee" EXACT [OBOL:automatic] synonym: "knee epithelial tissue" EXACT [OBOL:automatic] synonym: "knee epithelium" EXACT [OBOL:automatic] @@ -229092,6 +233256,8 @@ relationship: part_of UBERON:0001465 ! knee id: UBERON:0003233 name: epithelium of shoulder def: "An epithelium that is part of a shoulder [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of shoulder" EXACT [OBOL:automatic] synonym: "shoulder epithelial tissue" EXACT [OBOL:automatic] synonym: "shoulder epithelium" EXACT [OBOL:automatic] @@ -229111,6 +233277,7 @@ id: UBERON:0003234 name: extensor pollicis longus muscle def: "The Extensor pollicis longus is much larger than the Extensor pollicis brevis muscle, the origin of which it partly covers." [Wikipedia:Extensor_pollicis_longus_muscle] subset: human_reference_atlas +subset: human_subset synonym: "extensor pollicis longis" RELATED [Wikipedia:Extensor_pollicis_longus_muscle] synonym: "extensor pollicis longus" EXACT [FMA:38521] synonym: "musculus extensor pollicis longus" RELATED OMO:0003011 [Wikipedia:Extensor_pollicis_longus_muscle] @@ -229131,6 +233298,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3e/Ex id: UBERON:0003235 name: epithelium of upper jaw def: "An epithelium that is part of a upper jaw [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "epithelial tissue of upper jaw" EXACT [OBOL:automatic] synonym: "epithelium of palatoquadrate arch" EXACT [OBOL:automatic] @@ -229150,6 +233319,8 @@ relationship: part_of UBERON:0001709 ! upper jaw region id: UBERON:0003236 name: epithelium of lower jaw def: "An epithelium that is part of a lower jaw [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of lower jaw" EXACT [OBOL:automatic] synonym: "epithelial tissue of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "epithelium of ventral mandibular arch" EXACT [OBOL:automatic] @@ -229170,6 +233341,8 @@ relationship: part_of UBERON:0001710 ! lower jaw region id: UBERON:0003238 name: epithelium of superior semicircular canal def: "An epithelium that is part of an anterior semicircular canal [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anterior semicircular canal epithelial tissue" EXACT [OBOL:automatic] synonym: "anterior semicircular canal epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of anterior semicircular canal" EXACT [OBOL:automatic] @@ -229191,6 +233364,8 @@ relationship: part_of UBERON:0001841 ! anterior semicircular canal id: UBERON:0003239 name: epithelium of posterior semicircular canal def: "An epithelium that is part of a posterior semicircular canal [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of posterior semicircular canal" EXACT [OBOL:automatic] synonym: "posterior semicircular canal epithelial tissue" EXACT [OBOL:automatic] synonym: "posterior semicircular canal epithelium" EXACT [OBOL:automatic] @@ -229207,6 +233382,8 @@ relationship: part_of UBERON:0001842 ! posterior semicircular canal id: UBERON:0003240 name: epithelium of lateral semicircular canal def: "An epithelium that is part of a lateral semicircular canal [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of lateral semicircular canal" EXACT [OBOL:automatic] synonym: "lateral semicircular canal epithelial tissue" EXACT [OBOL:automatic] synonym: "lateral semicircular canal epithelium" EXACT [OBOL:automatic] @@ -229223,6 +233400,8 @@ relationship: part_of UBERON:0001843 ! lateral semicircular canal id: UBERON:0003241 name: epithelium of utricle def: "An epithelium that is part of a utricle of membranous labyrinth [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of membranous labyrinth utricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of utricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of utricle of membranous labyrinth" EXACT [OBOL:automatic] @@ -229259,6 +233438,8 @@ property_value: editor_note "TODO - check relationships w.r.t macula" xsd:string id: UBERON:0003242 name: epithelium of saccule def: "An epithelium that is part of a saccule of membranous labyrinth [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of membranous labyrinth saccule" EXACT [OBOL:automatic] synonym: "epithelial tissue of saccule" EXACT [OBOL:automatic] synonym: "epithelial tissue of saccule of membranous labyrinth" EXACT [OBOL:automatic] @@ -229294,6 +233475,8 @@ property_value: editor_note "TODO - check relationships w.r.t macula" xsd:string id: UBERON:0003243 name: epithelium of cochlear duct def: "An epithelium that is part of a cochlear duct of membranous labyrinth [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cochlear duct epithelial tissue" EXACT [OBOL:automatic] synonym: "cochlear duct epithelium" EXACT [OBOL:automatic] synonym: "cochlear duct of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic] @@ -229318,6 +233501,8 @@ relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth id: UBERON:0003244 name: epithelium of mammary gland def: "The epithelial layer of the luminal surfaces of the mammary gland." [MGI:csmith, MP:0009504] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epithelium of lactiferous gland" EXACT [FMA:74445] synonym: "lactiferous gland epithelium" EXACT [FMA:74445] @@ -229346,6 +233531,8 @@ relationship: part_of UBERON:0005200 {gci_relation="part_of", gci_filler="NCBITa id: UBERON:0003246 name: epithelium of endolymphatic sac def: "An epithelium that is part of a endolymphatic sac [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "endolymphatic sac epithelial tissue" EXACT [OBOL:automatic] synonym: "endolymphatic sac epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of endolymphatic sac" EXACT [OBOL:automatic] @@ -229364,6 +233551,8 @@ property_value: editor_note "See https://github.com/obophenotype/uberon/issues/1 id: UBERON:0003247 name: epithelium of forearm def: "An epithelium that is part of a lower arm [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "forearm epithelium" EXACT [] xref: EHDAA2:0000554 xref: EHDAA:4174 @@ -229380,6 +233569,8 @@ relationship: part_of UBERON:0002386 ! forelimb zeugopod id: UBERON:0003248 name: epithelium of footplate def: "An epithelium that is part of a footplate." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot plate epithelium" EXACT [] synonym: "footplate epithelium" EXACT [EHDAA2:0000548] xref: EHDAA2:0000548 @@ -229398,6 +233589,8 @@ relationship: part_of UBERON:0006871 ! embryonic footplate id: UBERON:0003249 name: epithelium of otic placode def: "An epithelium that is part of a otic placode [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of otic placode" EXACT [OBOL:automatic] synonym: "otic epithelium" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "otic placode epithelial tissue" EXACT [OBOL:automatic] @@ -229420,6 +233613,8 @@ id: UBERON:0003250 name: rectus capitis lateralis muscle def: "A muscle that arises from the upper surface of the transverse process of the atlas and inserts into the under surface of the jugular process of the occipital bone." [Wikipedia:Rectus_capitis_lateralis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "lateral rectus capitis" EXACT [FMA:46316] synonym: "musculus rectus capitis lateralis" EXACT OMO:0003011 [Wikipedia:Rectus_capitis_lateralis_muscle] @@ -229442,6 +233637,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b7/Re [Term] id: UBERON:0003251 name: temporal part of head +subset: human_subset +subset: mouse_subset synonym: "temporal region" RELATED [FMA:63867] synonym: "temporal region of head" RELATED [FMA:63867] xref: FMA:63867 @@ -229454,6 +233651,8 @@ property_value: editor_note "see UBERONREF:0000007 'temporal region'" xsd:string id: UBERON:0003252 name: thoracic rib cage def: "Subdivision of skeletal system that consists of all ribs in an organism connected to the sternum and the vertebrae. Some vertebrates have abdominal ribs (gastrialia), not connected to the vertebrate - these are not considered part of the rib case." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cavea thoracis" EXACT OMO:0003011 [FMA:7480, FMA:TA] synonym: "cavea thoracis" RELATED OMO:0003011 [Wikipedia:Human_rib_cage] @@ -229476,6 +233675,8 @@ property_value: external_definition "Anatomical cluster that consists of more th id: UBERON:0003253 name: neck of rib def: "The neck of the rib is the flattened portion which extends lateralward from the head; it is about 2.5 cm. long, and is placed in front of the transverse process of the lower of the two vertebrC& with which the head articulates. Its anterior surface is flat and smooth, its posterior rough for the attachment of the ligament of the neck, and perforated by numerous foramina. Of its two borders the superior presents a rough crest (crista colli costE) for the attachment of the anterior costotransverse ligament; its inferior border is rounded. On the posterior surface at the junction of the neck and body, and nearer the lower than the upper border, is an eminencebthe tubercle; it consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrC& to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs." [Wikipedia:Neck_of_rib] +subset: human_subset +subset: mouse_subset synonym: "collum costae" EXACT OMO:0003011 [Wikipedia:Neck_of_rib] synonym: "collum costae" RELATED OMO:0003011 [Wikipedia:Neck_of_rib] synonym: "rib neck" EXACT [FMA:7576] @@ -229495,6 +233696,8 @@ id: UBERON:0003254 name: amniotic ectoderm alt_id: UBERON:0008359 subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "amnion ectoderm" EXACT [EHDAA2:0000117, OBOL:automatic] synonym: "amnion epithelium" RELATED [BTO:0000897] synonym: "amnionic ectoderm" EXACT [http://placentation.ucsd.edu/glossfs.html, ISBN:9780878932504] @@ -229536,6 +233739,8 @@ is_obsolete: true id: UBERON:0003257 name: yolk sac endoderm def: "The portion of the yolk sac that is derived from endoderm and lines the yolk sac." [UBERON:cjm] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0002215 xref: EHDAA:166 xref: EMAPA:16086 @@ -229554,6 +233759,8 @@ relationship: part_of UBERON:0001040 ! yolk sac id: UBERON:0003258 name: endoderm of foregut def: "An endoderm that is part of a foregut [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foregut endoderm" EXACT [OBOL:automatic] xref: EHDAA2:0004568 xref: EHDAA:524 @@ -229571,6 +233778,8 @@ property_value: editor_note "TODO - check" xsd:string id: UBERON:0003259 name: endoderm of midgut def: "An endoderm that is part of a midgut [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "midgut endoderm" EXACT [OBOL:automatic] xref: EHDAA:987 xref: EMAPA:16257 @@ -229590,6 +233799,8 @@ property_value: editor_note "TODO - check" xsd:string id: UBERON:0003260 name: endoderm of hindgut def: "An endoderm that is part of a hindgut [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hindgut endoderm" EXACT [OBOL:automatic] xref: EHDAA:979 xref: RETIRED_EHDAA2:0000781 @@ -229608,6 +233819,8 @@ id: UBERON:0003261 name: thyroid primordium endoderm alt_id: UBERON:0005235 def: "An endoderm that is part of a thyroid primordium." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "endoderm of thyroid primordium" EXACT [OBOL:automatic] xref: EHDAA:956 xref: EMAPA:25357 @@ -229626,6 +233839,8 @@ name: amniotic mesoderm alt_id: UBERON:0003411 def: "A mesenchyme that is part of a amnion." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "amnion mesenchyme" EXACT [EHDAA2:0000118] synonym: "amnion mesoderm" EXACT [OBOL:automatic] synonym: "amnionic mesenchyme" RELATED [EMAPA:16265] @@ -229652,6 +233867,8 @@ id: UBERON:0003265 name: chorionic mesenchyme alt_id: UBERON:0003423 def: "A mesenchyme that is part of a chorion." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "chorion mesenchyme" EXACT [OBOL:automatic] synonym: "chorion mesoderm" EXACT [RETIRED_EHDAA2:0000247] synonym: "chorionic mesenchyme" EXACT [EHDAA2:0003245] @@ -229685,6 +233902,8 @@ consider: EMAPA:17263 id: UBERON:0003267 name: tooth of upper jaw def: "A calcareous tooth that is part of the upper jaw region. In mammals, the upper jaw teeth are attached to the maxilla." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "maxillary tooth" NARROW [NCBITaxon:40674] synonym: "upper jaw tooth" EXACT [MA:0001909] xref: EHDAA:8045 @@ -229708,6 +233927,8 @@ property_value: editor_note "Note that we follow EHDAA2 and consider teeth part id: UBERON:0003268 name: tooth of lower jaw def: "A calcareous tooth that is part of the lower jaw region. In mammals, the lower jaw teeth are attached to the mandible (dentary)." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "calcareous tooth of lower jaw" EXACT [OBOL:automatic] synonym: "lower jaw calcareous tooth" EXACT [OBOL:automatic] synonym: "lower jaw dentine containing tooth" EXACT [OBOL:automatic] @@ -229735,6 +233956,8 @@ relationship: part_of UBERON:0009679 ! set of lower jaw teeth id: UBERON:0003269 name: skeletal muscle tissue of eye def: "A portion of skeletal muscle tissue that is part of a eye [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "eye skeletal muscle" EXACT [OBOL:automatic] synonym: "eye skeletal muscle group" RELATED [EHDAA2:0000486] synonym: "eye skeletal muscle tissue" EXACT [OBOL:automatic] @@ -229759,6 +233982,8 @@ replaced_by: UBERON:0000378 id: UBERON:0003274 name: mesothelium of omental bursa def: "A mesothelium that is part of a lesser sac [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lesser sac mesothelium" EXACT [EHDAA2:0004557] synonym: "omental bursa mehomhelium" RELATED [VHOG:0000441] synonym: "omental bursa mesothelium" EXACT [OBOL:automatic] @@ -229802,6 +234027,8 @@ consider: UBERON:0004288 id: UBERON:0003277 name: skeleton of upper jaw def: "A subdivision of the skeleton that corresponds to the upper part of the mouth. The lower jaw skeleton includes the following elements, when present: upper jaw teeth, the maxilla and other lower jaw bones." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "upper jaw" BROAD [MA:0001908] synonym: "upper jaw skeleton" EXACT [] @@ -229827,6 +234054,8 @@ property_value: homology_notes "The jaw joint of all jawed vertebrates, except f id: UBERON:0003278 name: skeleton of lower jaw def: "A subdivision of the skeleton that corresponds to the lower part of the mouth. The lower jaw skeleton includes the following elements, when present: lower jaw teeth, the mandible and other lower jaw bones, and Meckel's cartilage." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lower jaw" BROAD [MA:0001906, ZFA:0001273] synonym: "lower jaw skeleton" EXACT [AAO:0000274] @@ -229859,6 +234088,8 @@ property_value: homology_notes "The jaw joint of all jawed vertebrates, except f id: UBERON:0003279 name: endothelium of trachea def: "An endothelium that is part of a trachea." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "endothelium of windpipe" EXACT [OBOL:automatic] synonym: "trachea endothelium" EXACT [OBOL:automatic] synonym: "windpipe endothelium" EXACT [OBOL:automatic] @@ -229875,6 +234106,8 @@ relationship: part_of UBERON:0003126 ! trachea id: UBERON:0003280 name: endothelium of main bronchus def: "An endothelium that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchus principalis endothelium" EXACT [OBOL:automatic] synonym: "endothelium of bronchus principalis" EXACT [OBOL:automatic] synonym: "endothelium of primary bronchus" EXACT [OBOL:automatic] @@ -229895,6 +234128,8 @@ relationship: part_of UBERON:0002182 ! main bronchus id: UBERON:0003281 name: mesentery of stomach def: "The portion of the primitive mesentery that encloses the stomach; from its dorsal sheet, the greater omentum develops, and from its ventral sheet, the lesser omentum." [http://medical-dictionary.thefreedictionary.com/mesogastrium] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "mesentery of ventriculus" EXACT [OBOL:automatic] synonym: "mesogaster" EXACT [http://medical-dictionary.thefreedictionary.com/mesogastrium] @@ -229920,6 +234155,8 @@ property_value: external_definition "The portion of the primitive mesentery that id: UBERON:0003282 name: mesentery of heart def: "A mesentery that surrounds the heart." [MA:th] +subset: human_subset +subset: mouse_subset synonym: "cardiac mesentery" RELATED [EMAPA:16212] synonym: "heart mesentery" EXACT [OBOL:automatic] synonym: "mesocardium" RELATED [MA:0000098] @@ -229936,6 +234173,8 @@ relationship: part_of UBERON:0000948 ! heart id: UBERON:0003283 name: mesentery of oesophagus def: "A mesentery that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "esophagus mesentery" EXACT [MA:0001569] synonym: "gullet mesentery" EXACT [OBOL:automatic] synonym: "mesentery of esophagus" EXACT [OBOL:automatic] @@ -229958,6 +234197,8 @@ property_value: homology_notes "Although all vertebrates have a digestive tract id: UBERON:0003284 name: mesentery of midgut def: "A mesentery that is part of a midgut [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "midgut mesentery" EXACT [OBOL:automatic] xref: EHDAA2:0001202 xref: EHDAA:3031 @@ -229980,6 +234221,8 @@ consider: UBERON:0002101 [Term] id: UBERON:0003286 name: foregut region of duodenum +subset: human_subset +subset: mouse_subset synonym: "foregut duodenum" EXACT [OBOL:automatic] xref: EHDAA2:0000560 xref: EHDAA:3830 @@ -229991,6 +234234,8 @@ relationship: part_of UBERON:0002114 ! duodenum [Term] id: UBERON:0003287 name: midgut region of duodenum +subset: human_subset +subset: mouse_subset synonym: "midgut duodenum" EXACT [OBOL:automatic] xref: EHDAA2:0001189 xref: EHDAA:3937 @@ -230003,6 +234248,8 @@ relationship: part_of UBERON:0002114 ! duodenum id: UBERON:0003288 name: meninx of midbrain def: "A meninx that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "meninges of midbrain" EXACT OMO:0003004 [OBOL:automatic] synonym: "mesencephalon meninges" RELATED OMO:0003004 [VHOG:0000012] synonym: "midbrain meninges" EXACT OMO:0003004 [OBOL:automatic] @@ -230025,6 +234272,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003289 name: meninx of telencephalon def: "A meninx that is part of a telencephalon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "meninges of telencephalon" EXACT OMO:0003004 [OBOL:automatic] synonym: "telencephalon meninges" EXACT OMO:0003004 [OBOL:automatic] synonym: "telencephalon meninx" EXACT [OBOL:automatic] @@ -230045,6 +234294,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003290 name: meninx of diencephalon def: "A meninx that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "between brain meninges" EXACT [OBOL:automatic] synonym: "between brain meninx" EXACT [OBOL:automatic] synonym: "diencephalon meninges" EXACT [OBOL:automatic] @@ -230077,6 +234328,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003291 name: meninx of hindbrain def: "A meninx that is part of a hindbrain [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hindbrain meninges" EXACT [OBOL:automatic] synonym: "hindbrain meninx" EXACT [OBOL:automatic] synonym: "meninges of hindbrain" EXACT [OBOL:automatic] @@ -230100,6 +234353,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003292 name: meninx of spinal cord def: "A meninx that is part of a spinal cord [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "menines of spinal cord" EXACT OMO:0003004 [] synonym: "meninges of spinal cord" EXACT [OBOL:automatic] @@ -230128,6 +234383,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003294 name: gland of foregut def: "A gland that is part of a foregut [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foregut gland" EXACT [OBOL:automatic] xref: EHDAA2:0000567 xref: EHDAA:950 @@ -230142,6 +234399,8 @@ relationship: part_of UBERON:0001041 ! foregut id: UBERON:0003295 name: pharyngeal gland def: "Racemose mucous glands beneath the mucous membrane of the pharynx." [http://www.biology-online.org/dictionary/] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "glandulae pharyngeae" RELATED [BTO:0004849] synonym: "pharynx gland" EXACT [EHDAA2:0001461] @@ -230159,6 +234418,8 @@ relationship: part_of UBERON:0001042 {source="BTO"} ! chordate pharynx id: UBERON:0003296 name: gland of diencephalon def: "Any gland that is part of the diencephalon. Examples: pineal gland, neurohypophysis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "diencephalon gland" EXACT [OBOL:automatic] synonym: "interbrain gland" EXACT [OBOL:automatic] xref: EHDAA2:0000395 @@ -230174,6 +234435,8 @@ relationship: part_of UBERON:0001894 ! diencephalon id: UBERON:0003297 name: gland of integumental system def: "A gland that is part of a integumental system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "integumental gland" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "integumental system gland" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "integumentary gland" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -230190,6 +234453,8 @@ relationship: part_of UBERON:0002416 ! integumental system id: UBERON:0003299 name: roof plate of midbrain def: "The mesencephalic roof plate, including the caudal and rostral part of the midbrain roof." [MGI:anna, MGI:smb, MP:0006103] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "midbrain roof" RELATED [EMAPA:16981] @@ -230222,6 +234487,8 @@ property_value: external_definition "Roof plate that is part of the midbrain. [B id: UBERON:0003300 name: roof plate of telencephalon def: "A roof plate that is part of a telencephalon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "roof plate telencephalon" EXACT [VHOG:0000774] synonym: "roofplate medulla telencephalon" RELATED [VHOG:0000774] synonym: "roofplate of telencephalon" EXACT [OBOL:automatic] @@ -230244,6 +234511,8 @@ property_value: external_definition "Roof plate that is part of the telencephalo id: UBERON:0003301 name: roof plate of diencephalon def: "A roof plate that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "between brain roof plate" EXACT [OBOL:automatic] synonym: "between brain roofplate" EXACT [OBOL:automatic] @@ -230284,6 +234553,8 @@ property_value: external_definition "Roof plate that is part of the diencephalon id: UBERON:0003302 name: roof plate of metencephalon def: "A roof plate that is part of a metencephalon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epencephalon-2 roof plate" EXACT [OBOL:automatic] synonym: "epencephalon-2 roofplate" EXACT [OBOL:automatic] synonym: "metencephalon roof plate" EXACT [OBOL:automatic] @@ -230309,6 +234580,8 @@ property_value: external_definition "Roof plate that is part of the metencephalo id: UBERON:0003303 name: roof plate of medulla oblongata def: "A roof plate that is part of a medulla oblongata [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bulb roof plate" EXACT [OBOL:automatic] synonym: "bulb roofplate" EXACT [OBOL:automatic] synonym: "medulla oblongata roof plate" EXACT [OBOL:automatic] @@ -230343,6 +234616,8 @@ id: UBERON:0003304 name: mesoderm blood island alt_id: UBERON:0003305 def: "A blood island that is part of a mesoderm." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesenchyme blood island" RELATED [OBOL:automatic] synonym: "mesoderm blood islands" EXACT OMO:0003004 [EHDAA2:0003241] xref: EHDAA2:0003241 @@ -230363,6 +234638,8 @@ id: UBERON:0003306 name: floor plate of neural tube def: "A floor plate that is part of a neural tube [Automatically generated definition]." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "floor plate neural tube" EXACT [ZFA:0001434] synonym: "floorplate neural tube" RELATED [VHOG:0000300] @@ -230394,6 +234671,8 @@ id: UBERON:0003307 name: floor plate of midbrain def: "A floor plate that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "floor plate mesencephalon" RELATED [VHOG:0000780] synonym: "floor plate midbrain" EXACT [VHOG:0000780] @@ -230426,6 +234705,8 @@ property_value: homology_notes "In summary, the available data for tunicates, am id: UBERON:0003308 name: floor plate of telencephalon def: "A floor plate that is part of a telencephalon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "floor plate telencephalic region" EXACT [ZFA:0000914] synonym: "floor plate telencephalon" EXACT [VHOG:0000783] @@ -230452,6 +234733,8 @@ property_value: homology_notes "In summary, the available data for tunicates, am id: UBERON:0003309 name: floor plate of diencephalon def: "A floor plate that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "between brain floor plate" EXACT [OBOL:automatic] synonym: "between brain floorplate" EXACT [OBOL:automatic] @@ -230492,6 +234775,8 @@ property_value: homology_notes "In summary, the available data for tunicates, am id: UBERON:0003310 name: floor plate of metencephalon def: "A floor plate that is part of a metencephalon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epencephalon-2 floor plate" EXACT [OBOL:automatic] synonym: "epencephalon-2 floorplate" EXACT [OBOL:automatic] synonym: "floor plate metencephalon" EXACT [VHOG:0000784] @@ -230518,6 +234803,8 @@ property_value: homology_notes "In summary, the available data for tunicates, am id: UBERON:0003311 name: floor plate of medulla oblongata def: "A floor plate that is part of a medulla oblongata [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bulb floor plate" EXACT [OBOL:automatic] synonym: "bulb floorplate" EXACT [OBOL:automatic] synonym: "floor plate medulla oblongata" EXACT [VHOG:0000786] @@ -230552,6 +234839,8 @@ property_value: homology_notes "In summary, the available data for tunicates, am id: UBERON:0003312 name: mesenchyme of testis def: "Mesenchyme that is part of a developing testis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "testis mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0002010 xref: EHDAA:8150 @@ -230566,6 +234855,8 @@ relationship: part_of UBERON:0000473 ! testis id: UBERON:0003314 name: eye mesenchyme def: "Mesenchyme that is part of a developing camera-type eye." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesenchyme of eye" EXACT [OBOL:automatic] xref: EHDAA2:0000485 xref: EHDAA:2910 @@ -230584,6 +234875,8 @@ id: UBERON:0003315 name: mesenchyme of ovary def: "Mesenchyme that is part of a developing ovary [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "female reproductive system gonad mesenchyme" EXACT [OBOL:automatic] synonym: "female reproductive system gonada mesenchyme" EXACT [OBOL:automatic] synonym: "gonad of female reproductive system mesenchyme" EXACT [OBOL:automatic] @@ -230607,6 +234900,8 @@ id: UBERON:0003316 name: mesenchyme of yolk sac alt_id: UBERON:0003264 def: "The portion of the yolk sac that is derived from mesoderm and consists of mesenchyme." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "yolk sac mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0002216 xref: EHDAA:168 @@ -230624,6 +234919,8 @@ relationship: part_of UBERON:0001040 ! yolk sac id: UBERON:0003317 name: odontogenic papilla of incisor def: "An odontogenic papilla that is part of a incisor tooth [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "incisor dental papilla" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "incisor odontogenic papilla" EXACT [OBOL:automatic] synonym: "incisor tooth odontogenic papilla" EXACT [OBOL:automatic] @@ -230640,6 +234937,8 @@ relationship: part_of UBERON:0001098 ! incisor tooth id: UBERON:0003318 name: mesenchyme of elbow def: "Mesenchyme that is part of a developing elbow [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cubital region mesenchyme" EXACT [OBOL:automatic] synonym: "elbow mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of cubital region" EXACT [OBOL:automatic] @@ -230657,6 +234956,8 @@ relationship: part_of UBERON:0001461 ! elbow id: UBERON:0003319 name: mesenchyme of carpal region def: "Mesenchyme of the carpal region that contributes to the carpal skeleton." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "carpal region mesenchyme" EXACT [OBOL:automatic] synonym: "carpus mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of wrist" EXACT [OBOL:automatic] @@ -230672,6 +234973,8 @@ relationship: part_of UBERON:0004452 ! carpal region id: UBERON:0003320 name: mesenchyme of hip def: "Mesenchyme that is part of a developing hip [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hip mesenchyme" EXACT [OBOL:automatic] synonym: "hip region mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of hip region" EXACT [OBOL:automatic] @@ -230691,6 +234994,8 @@ relationship: part_of UBERON:0001464 ! hip id: UBERON:0003321 name: mesenchyme of knee def: "Mesenchyme that is part of a developing knee [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "knee mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0000898 xref: EHDAA:5163 @@ -230706,6 +235011,8 @@ relationship: part_of UBERON:0001465 ! knee id: UBERON:0003322 name: mesenchyme of shoulder def: "Mesenchyme that is part of a developing shoulder [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "shoulder mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0001837 xref: EHDAA:4184 @@ -230721,6 +235028,8 @@ relationship: part_of UBERON:0001467 ! shoulder id: UBERON:0003323 name: mesenchyme of upper jaw def: "Mesenchyme that is part of a developing upper jaw [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesenchyme of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "palatoquadrate arch mesenchyme" EXACT [OBOL:automatic] synonym: "upper jaw mesenchyme" EXACT [OBOL:automatic] @@ -230739,6 +235048,8 @@ relationship: part_of UBERON:0001709 ! upper jaw region id: UBERON:0003324 name: mesenchyme of lower jaw def: "Mesenchyme that is part of a developing lower jaw [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lower jaw mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of ventral mandibular arch" EXACT [OBOL:automatic] synonym: "ventral mandibular arch mesenchyme" EXACT [OBOL:automatic] @@ -230756,6 +235067,8 @@ relationship: part_of UBERON:0001710 ! lower jaw region id: UBERON:0003325 name: mesenchyme of pinna def: "Mesenchyme that is part of a developing pinna [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "auricle mesenchyme" EXACT [OBOL:automatic] synonym: "auricle of ear mesenchyme" EXACT [OBOL:automatic] synonym: "auricle of external ear mesenchyme" EXACT [OBOL:automatic] @@ -230783,6 +235096,8 @@ property_value: external_ontology_notes "EMAPA divides this spatially into conde id: UBERON:0003326 name: mesenchyme of mammary gland def: "Mesenchyme that is part of a developing mammary gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lactiferous gland mesenchyme" EXACT [OBOL:automatic] synonym: "lobe of breast mesenchyme" EXACT [OBOL:automatic] synonym: "lobe of mammary gland mesenchyme" EXACT [OBOL:automatic] @@ -230805,6 +235120,8 @@ relationship: part_of UBERON:0001911 ! mammary gland id: UBERON:0003327 name: mesenchyme of forearm def: "Mesenchyme that is part of a developing lower arm [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000555 xref: EHDAA:4176 xref: EHDAA:6222 @@ -230820,6 +235137,8 @@ id: UBERON:0003328 name: mesenchyme of footplate alt_id: UBERON:0005260 def: "Mesenchyme that is part of a footplate." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot plate mesenchyme" EXACT [] xref: EHDAA2:0000549 xref: EHDAA:5149 @@ -230839,6 +235158,8 @@ id: UBERON:0003329 name: submucosa of anal canal def: "A submucosa that is part of an anal canal [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "anal canal submucosa" EXACT [OBOL:automatic] synonym: "anal canal viewed anatomically submucosa" EXACT [OBOL:automatic] synonym: "anal region submucosa" EXACT [OBOL:automatic] @@ -230862,6 +235183,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003330 name: submucosa of rectum def: "The submucous layer of the wall of the rectum." [BTO:0002114] +subset: human_subset +subset: mouse_subset synonym: "rectal submucosa" EXACT [FMA:15034] synonym: "rectum submucosa" EXACT [OBOL:automatic] synonym: "tela submucosa recti" EXACT OMO:0003011 [BTO:0002114] @@ -230879,6 +235202,8 @@ id: UBERON:0003331 name: submucosa of colon def: "A submucosa that is part of a colon [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "colon submucosa" EXACT [OBOL:automatic] synonym: "colonic submucosa" EXACT [FMA:14985] synonym: "large bowel submucosa" EXACT [OBOL:automatic] @@ -230898,6 +235223,8 @@ id: UBERON:0003332 name: submucosa of duodenum def: "A submucosa that is part of a duodenum [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "doudenal submucosa" EXACT [FMA:14943] synonym: "duodenal submucosa" EXACT [FMA:14943] synonym: "duodenum submucosa" EXACT [OBOL:automatic] @@ -230918,6 +235245,8 @@ id: UBERON:0003333 name: submucosa of jejunum def: "A submucosa that is part of a jejunum [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "jejunal submucosa" EXACT [FMA:14950] synonym: "jejunum submucosa" EXACT [OBOL:automatic] xref: EMAPA:27111 @@ -230933,6 +235262,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003334 name: serosa of rectum def: "A serous membrane that is part of a rectum [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "rectal serosa" EXACT [FMA:15039] synonym: "rectum serosa" EXACT [OBOL:automatic] synonym: "rectum serous membrane" EXACT [OBOL:automatic] @@ -230950,6 +235281,8 @@ id: UBERON:0003335 name: serosa of colon def: "A serous membrane that is part of a colon [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "colon serosa" EXACT [OBOL:automatic] synonym: "colon serous membrane" EXACT [OBOL:automatic] synonym: "colonic serosa" EXACT [FMA:14990] @@ -230974,6 +235307,8 @@ id: UBERON:0003336 name: serosa of duodenum def: "A serous membrane that is part of a duodenum [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "doudenal serosa" EXACT [FMA:14948] synonym: "duodenal serosa" EXACT [FMA:14948] synonym: "duodenum serosa" EXACT [OBOL:automatic] @@ -230996,6 +235331,8 @@ id: UBERON:0003337 name: serosa of jejunum def: "A serous membrane that is part of a jejunum [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "jejunal serosa" EXACT [FMA:14955] synonym: "jejunum serosa" EXACT [OBOL:automatic] synonym: "jejunum serous membrane" EXACT [OBOL:automatic] @@ -231014,6 +235351,8 @@ id: UBERON:0003338 name: ganglion of peripheral nervous system def: "A spatially aggregated collection of nerve cell bodies in the PNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections. (CUMBO)." [BIRNLEX:2548] subset: cumbo +subset: human_subset +subset: mouse_subset synonym: "peripheral nervous system ganglion" EXACT [OBOL:automatic] xref: BIRNLEX:2548 xref: BTO:0001123 @@ -231029,6 +235368,8 @@ property_value: external_ontology_notes "we follow MA in including separate clas id: UBERON:0003339 name: ganglion of central nervous system def: "A ganglion that is part of a central nervous system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "central nervous system ganglion" EXACT [OBOL:automatic] synonym: "ganglion of neuraxis" EXACT [OBOL:automatic] synonym: "neuraxis ganglion" EXACT [OBOL:automatic] @@ -231058,6 +235399,8 @@ id: UBERON:0003342 name: mucosa of anal canal def: "A mucosa that is part of an anal canal [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "anal canal mucosa" EXACT [OBOL:automatic] synonym: "anal canal mucosa of organ" EXACT [OBOL:automatic] synonym: "anal canal mucous membrane" EXACT [OBOL:automatic] @@ -231107,6 +235450,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003343 name: mucosa of oral region def: "A mucosa that is part of a oral opening [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of oral opening" EXACT [OBOL:automatic] synonym: "mucosa of oral part of face" EXACT [OBOL:automatic] synonym: "mucosa of organ of oral opening" EXACT [OBOL:automatic] @@ -231148,6 +235493,9 @@ relationship: part_of UBERON:0000166 ! oral opening id: UBERON:0003346 name: mucosa of rectum def: "A mucosa that is part of a rectum [Automatically generated definition]." [OBOL:automatic] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of rectum" EXACT [OBOL:automatic] synonym: "mucous membrane of rectum" EXACT [OBOL:automatic] synonym: "organ mucosa of rectum" EXACT [OBOL:automatic] @@ -231166,12 +235514,15 @@ is_a: UBERON:0001207 ! mucosa of large intestine intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001052 ! rectum relationship: part_of UBERON:0001052 ! rectum +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0003350 name: epithelium of mucosa def: "A layer of epithelial cells on the surface of the mucosa." [BTO:0003752] comment: lies on top of lamina propria +subset: human_subset +subset: mouse_subset synonym: "lamina epithelialis mucosa" RELATED [BTO:0003752] synonym: "lamina epithelialis mucosae" RELATED [BTO:0003752] xref: BTO:0003752 @@ -231184,6 +235535,8 @@ relationship: part_of UBERON:0000344 ! mucosa id: UBERON:0003351 name: pharyngeal epithelium def: "An epithelium that is part of a pharynx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "epithelial tissue of pharynx" EXACT [OBOL:automatic] synonym: "epithelium of pharynx" EXACT [OBOL:automatic] @@ -231211,6 +235564,8 @@ property_value: external_definition "Epithelium lining the pharynx consisting la id: UBERON:0003352 name: epithelium of midgut def: "An epithelium that is part of a midgut." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of midgut" EXACT [OBOL:automatic] synonym: "midgut epithelial tissue" EXACT [OBOL:automatic] synonym: "midgut epithelium" EXACT [BTO:0005053, OBOL:automatic] @@ -231227,6 +235582,8 @@ relationship: part_of UBERON:0001045 {source="BTO"} ! midgut id: UBERON:0003353 name: epithelium of hindgut def: "An epithelium that is part of a hindgut [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of hindgut" EXACT [OBOL:automatic] synonym: "hindgut epithelial tissue" EXACT [OBOL:automatic] synonym: "hindgut epithelium" EXACT [OBOL:automatic] @@ -231242,6 +235599,8 @@ relationship: part_of UBERON:0001046 ! hindgut id: UBERON:0003354 name: epithelium of rectum def: "An epithelium that is part of a rectum [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of rectum" EXACT [OBOL:automatic] synonym: "rectal epithelium" EXACT [FMA:17510] synonym: "rectum epithelial tissue" EXACT [OBOL:automatic] @@ -231262,6 +235621,8 @@ relationship: part_of UBERON:0001052 ! rectum id: UBERON:0003355 name: epithelium of incisor def: "An epithelium that is part of a incisor tooth [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of incisor" EXACT [OBOL:automatic] synonym: "epithelial tissue of incisor tooth" EXACT [OBOL:automatic] synonym: "epithelium of incisor tooth" EXACT [OBOL:automatic] @@ -231280,6 +235641,8 @@ relationship: part_of UBERON:0001098 ! incisor tooth id: UBERON:0003356 name: epithelium of nasal septum def: "An epithelium that is part of a nasal septum [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of nasal septum" EXACT [OBOL:automatic] synonym: "nasal septum epithelial tissue" EXACT [OBOL:automatic] synonym: "nasal septum epithelium" EXACT [OBOL:automatic] @@ -231294,6 +235657,8 @@ id: UBERON:0003357 name: epithelium of tongue def: "An epithelium that is part of a tongue [Automatically generated definition]." [OBOL:automatic] comment: examples: tongue squamous epithelium, keratined, non-keratinized and parakeratinized epithelium, as well as gustatory epithelium. Note that not all these subtypes are named in individual anatomy ontologies. +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epithelial tissue of tongue" EXACT [OBOL:automatic] synonym: "lingual epithelium" RELATED [BTO:0000992] @@ -231318,6 +235683,8 @@ relationship: part_of UBERON:0001723 ! tongue id: UBERON:0003358 name: epithelium of soft palate def: "An epithelium that is part of a soft palate [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of soft palate" EXACT [OBOL:automatic] synonym: "soft palate epithelial tissue" EXACT [OBOL:automatic] synonym: "soft palate epithelium" EXACT [OBOL:automatic] @@ -231333,6 +235700,8 @@ relationship: part_of UBERON:0001733 ! soft palate id: UBERON:0003359 name: epithelium of submandibular gland def: "An epithelium that is part of a submandibular gland [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of submandibular gland" EXACT [OBOL:automatic] synonym: "submandibular duct epithelium" RELATED [BTO:0004557] synonym: "submandibular gland duct epithelium" RELATED [BTO:0004557] @@ -231352,6 +235721,8 @@ relationship: part_of UBERON:0001736 ! submandibular gland id: UBERON:0003360 name: epithelium of parotid gland def: "An epithelium that is part of a parotid gland [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of parotid gland" EXACT [OBOL:automatic] synonym: "epithelium of parotid" EXACT [OBOL:automatic] synonym: "epithelium of parotid gland" EXACT [OBOL:automatic] @@ -231373,6 +235744,8 @@ relationship: part_of UBERON:0001831 ! parotid gland id: UBERON:0003361 name: epithelium of sublingual gland def: "An epithelium that is part of a sublingual gland [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ductus sublingualis epithelial tissue" EXACT [OBOL:automatic] synonym: "ductus sublingualis epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of ductus sublingualis" EXACT [OBOL:automatic] @@ -231398,6 +235771,8 @@ relationship: part_of UBERON:0001832 ! sublingual gland id: UBERON:0003362 name: epithelium of endolymphatic duct def: "An epithelium that is part of a endolymphatic duct [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "endolymphatic duct epithelial tissue" EXACT [OBOL:automatic] synonym: "endolymphatic duct epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of endolymphatic duct" EXACT [OBOL:automatic] @@ -231411,6 +235786,8 @@ relationship: part_of UBERON:0001860 ! endolymphatic duct id: UBERON:0003363 name: epithelium of ductus reuniens def: "An epithelium that is part of a ductus reuniens [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ductus reuniens epithelial tissue" EXACT [OBOL:automatic] synonym: "ductus reuniens epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of ductus reuniens" EXACT [OBOL:automatic] @@ -231424,6 +235801,8 @@ relationship: part_of UBERON:0001861 ! ductus reuniens id: UBERON:0003364 name: epithelium of right lung def: "An epithelium that is part of a right lung [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of right lung" EXACT [OBOL:automatic] synonym: "right lung epithelial tissue" EXACT [OBOL:automatic] synonym: "right lung epithelium" EXACT [OBOL:automatic] @@ -231438,6 +235817,8 @@ relationship: part_of UBERON:0002167 ! right lung id: UBERON:0003365 name: epithelium of left lung def: "An epithelium that is part of a left lung [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of left lung" EXACT [OBOL:automatic] synonym: "left lung epithelial tissue" EXACT [OBOL:automatic] synonym: "left lung epithelium" EXACT [OBOL:automatic] @@ -231452,6 +235833,8 @@ relationship: part_of UBERON:0002168 ! left lung id: UBERON:0003366 name: epithelium of uterine horn def: "An epithelium that is part of a uterine horn [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of uterine horn" EXACT [OBOL:automatic] synonym: "uterine horn epithelial tissue" EXACT [OBOL:automatic] synonym: "uterine horn epithelium" EXACT [OBOL:automatic] @@ -231465,6 +235848,8 @@ relationship: part_of UBERON:0002247 ! uterine horn id: UBERON:0003367 name: epithelium of vomeronasal organ def: "An epithelium that is part of a vomeronasal organ [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of Jacobson's organ" EXACT [OBOL:automatic] synonym: "epithelial tissue of vomeronasal organ" EXACT [OBOL:automatic] synonym: "epithelium of Jacobson's organ" EXACT [OBOL:automatic] @@ -231491,6 +235876,8 @@ property_value: editor_note "TODO - add cell types" xsd:string id: UBERON:0003368 name: epithelium of hard palate def: "An epithelium that is part of a hard palate [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of hard palate" EXACT [OBOL:automatic] synonym: "hard palate epithelial tissue" EXACT [OBOL:automatic] synonym: "hard palate epithelium" EXACT [OBOL:automatic] @@ -231506,6 +235893,8 @@ relationship: part_of UBERON:0003216 ! hard palate id: UBERON:0003369 name: fossa ovalis of heart def: "Found in the right atrium of the heart, the fossa ovalis is an embryonic remnant of the foramen ovale, which normally closes shortly after birth. In a heart specimen of a neonate, the fossa ovalis is translucent, but later in life the membrane thickens." [Wikipedia:Fossa_ovalis_(heart)] +subset: human_subset +subset: mouse_subset synonym: "fossa ovalis" EXACT [FMA:9246] synonym: "oval fossa" EXACT [FMA:9246] xref: FMA:9246 @@ -231520,6 +235909,8 @@ id: UBERON:0003371 name: pelvic appendage bud ectoderm alt_id: UBERON:0005232 def: "An unilaminar epithelium that surrounds a pelvic appendage bud." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hindlimb bud ectoderm" NARROW SENSU [EMAPA:16780] synonym: "hindlimb ectoderm" EXACT [VHOG:0001048] synonym: "hindlimb ectoderm" NARROW SENSU [VHOG:0001048] @@ -231545,6 +235936,8 @@ name: pectoral appendage bud ectoderm alt_id: UBERON:0005231 alt_id: UBERON:0005663 def: "An unilaminar epithelium that surrounds a pectoral appendage bud." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arm ectoderm" RELATED [OBOL:automatic] synonym: "forelimb bud ectoderm" NARROW SENSU [EMAPA:16407] synonym: "forelimb ectoderm" NARROW SENSU [VHOG:0001047] @@ -231568,6 +235961,8 @@ relationship: part_of UBERON:0005419 ! pectoral appendage bud id: UBERON:0003373 name: ectoderm of footplate def: "An ectoderm that is part of a footplate." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:17250 is_a: UBERON:0000924 ! ectoderm intersection_of: UBERON:0000924 ! ectoderm @@ -231578,6 +235973,8 @@ relationship: part_of UBERON:0006871 ! embryonic footplate id: UBERON:0003374 name: chorionic ectoderm def: "An extraembryonic structure that develops_from a ectoderm and is part of a chorion." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "chorion ectoderm" EXACT [OBOL:automatic] synonym: "chorion epithelium" RELATED [] synonym: "chorionic epithelium" RELATED [BTO:0005145] @@ -231594,6 +235991,8 @@ relationship: part_of UBERON:0003124 ! chorion membrane id: UBERON:0003378 name: cardiac muscle of auricular region def: "A cardiac muscle tissue that is part of a atrium auricular region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "atrium auricular region cardiac muscle" EXACT [EMAPA:36056] synonym: "auricular region heart muscle" EXACT [] synonym: "cardiac muscle tissue of auricle" EXACT [FMA:84279] @@ -231610,6 +236009,8 @@ id: UBERON:0003379 name: cardiac muscle of right atrium def: "A portion of cardiac muscle tissue that is part of a right atrium [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cardiac muscle of cardiac right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle of heart right atrium" EXACT [OBOL:automatic] synonym: "cardiac muscle tissue of heart right atrium" EXACT [OBOL:automatic] @@ -231636,6 +236037,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003380 name: cardiac muscle of left atrium def: "A portion of cardiac muscle tissue that is part of a left atrium [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cardiac left atrium cardiac muscle" EXACT [OBOL:automatic] synonym: "cardiac left atrium cardiac muscle tissue" EXACT [OBOL:automatic] synonym: "cardiac muscle of cardiac left atrium" EXACT [OBOL:automatic] @@ -231663,6 +236066,8 @@ relationship: part_of UBERON:0002079 ! left cardiac atrium id: UBERON:0003381 name: cardiac muscle of right ventricle def: "A portion of cardiac muscle tissue that is part of a right ventricle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cardiac muscle tissue of right ventricle" EXACT [FMA:83452] synonym: "right ventricle cardiac muscle" RELATED [VHOG:0001236] synonym: "right ventricular cardiac muscle tissue" EXACT [GO:0003221] @@ -231678,6 +236083,8 @@ relationship: part_of UBERON:0002080 ! heart right ventricle id: UBERON:0003382 name: cardiac muscle of left ventricle def: "A portion of cardiac muscle tissue that is part of a left ventricle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cardiac muscle tissue of left ventricle" EXACT [FMA:83453] synonym: "left ventricle cardiac muscle" RELATED [VHOG:0001234] synonym: "left ventricular cardiac muscle tissue" EXACT [GO:0003220] @@ -231694,6 +236101,8 @@ id: UBERON:0003383 name: cardiac muscle tissue of interventricular septum def: "A portion of cardiac muscle tissue that is part of an interventricular septum [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cardiac muscle of interventricular septum" EXACT [] synonym: "cardiac muscle tissue of interventricular septum" EXACT [FMA:84084] synonym: "interventricular septum cardiac muscle" EXACT [VHOG:0000999] @@ -231715,6 +236124,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003384 name: skeletal muscle tissue of pharynx def: "A portion of skeletal muscle tissue that is part of a pharynx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pharynx skeletal muscle" EXACT [OBOL:automatic] synonym: "pharynx skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of pharynx" EXACT [OBOL:automatic] @@ -231735,6 +236146,8 @@ consider: EMAPA:19144 id: UBERON:0003386 name: smooth muscle of eye def: "Any of the striated muscles that move the eye and include: superior rectus, inferior rectus, medial rectus, lateral rectus, superior oblique, inferior oblique, retractor bulbi." [MGI:cwg, MP:0005247] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ocular smooth muscle" EXACT [MA:0001268] xref: EMAPA:18807 @@ -231753,6 +236166,8 @@ name: smooth muscle of trachea alt_id: UBERON:0004244 def: "A portion of smooth muscle tissue that is part of a trachea [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "trachea smooth muscle" EXACT [MA:0001863] synonym: "tracheal smooth muscle" EXACT [BTO:0001391] @@ -231773,6 +236188,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003388 name: mesothelium of pericardial cavity def: "A mesothelium that is part of a pericardium [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cavity of pericardial sac meso-epithelium" EXACT [OBOL:automatic] synonym: "cavity of pericardial sac mesothelium" EXACT [OBOL:automatic] synonym: "meso-epithelium of cavity of pericardial sac" EXACT [OBOL:automatic] @@ -231790,6 +236207,8 @@ relationship: part_of UBERON:0002407 ! pericardium id: UBERON:0003389 name: mesothelium of diaphragm def: "A mesothelium that is part of a diaphragm [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "diaphragm meso-epithelium" EXACT [OBOL:automatic] synonym: "diaphragm mesothelium" EXACT [OBOL:automatic] synonym: "meso-epithelium of diaphragm" EXACT [OBOL:automatic] @@ -231808,6 +236227,8 @@ relationship: part_of UBERON:0001103 ! diaphragm id: UBERON:0003390 name: mesothelium of pleural cavity def: "A mesothelium that is part of a pleural cavity [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "meso-epithelium of pleural cavity" EXACT [OBOL:automatic] synonym: "mesothelium of pleura" EXACT [FMA:18148] synonym: "pleura" RELATED [EMAPA:16775] @@ -231827,6 +236248,8 @@ relationship: located_in UBERON:0002402 ! pleural cavity id: UBERON:0003393 name: mesentery of urinary system def: "A mesentery that is part of a urinary system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "excretory system mesentery" EXACT [OBOL:automatic] synonym: "mesentery of excretory system" EXACT [OBOL:automatic] synonym: "mesentery of renal system" EXACT [OBOL:automatic] @@ -231845,6 +236268,8 @@ relationship: part_of UBERON:0001008 ! renal system id: UBERON:0003394 name: mesentery of hindgut def: "A mesentery that is part of a hindgut [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hindgut mesentery" EXACT [OBOL:automatic] xref: EMAPA:16718 is_a: UBERON:0002095 ! mesentery @@ -231856,6 +236281,8 @@ relationship: part_of UBERON:0001046 ! hindgut id: UBERON:0003395 name: mesentery of rectum def: "A mesentery that is part of a rectum [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "rectum mesentery" EXACT [OBOL:automatic] xref: EMAPA:18664 is_a: UBERON:0003334 ! serosa of rectum @@ -231868,6 +236295,8 @@ relationship: part_of UBERON:0001052 ! rectum id: UBERON:0003396 name: mesentery of colon def: "A mesentery that is part of a colon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "colon mesentery" EXACT [OBOL:automatic] synonym: "large bowel mesentery" EXACT [OBOL:automatic] synonym: "large intestinal mesentery" EXACT [FMA:14645] @@ -231888,6 +236317,8 @@ relationship: part_of UBERON:0001155 ! colon id: UBERON:0003397 name: mesentery of duodenum def: "A mesentery that is part of a duodenum [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "duodenum mesentery" EXACT [OBOL:automatic] xref: EMAPA:19081 is_a: UBERON:0001170 ! mesentery of small intestine @@ -231900,6 +236331,8 @@ relationship: part_of UBERON:0002114 ! duodenum id: UBERON:0003398 name: mesentery of jejunum def: "A mesentery that is part of a jejunum [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "jejunal mesentery" EXACT [] synonym: "jejunum mesentery" EXACT [] synonym: "mesojejunum" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html] @@ -231916,6 +236349,8 @@ relationship: part_of UBERON:0002115 ! jejunum id: UBERON:0003403 name: skin of forearm def: "A zone of skin that is part of a lower arm [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "forearm skin" EXACT [FMA:38265] synonym: "lower arm skin" EXACT [OBOL:automatic] synonym: "lower segment of arm skin" EXACT [OBOL:automatic] @@ -231936,6 +236371,8 @@ relationship: part_of UBERON:0002386 ! forelimb zeugopod id: UBERON:0003404 name: lobar bronchus of right lung def: "A lobar bronchus that is part of a right lung [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "right lobar bronchus" EXACT [OBOL:automatic] synonym: "right lung lobar bronchus" EXACT [OBOL:automatic] synonym: "right lung secondary bronchus" EXACT [OBOL:automatic] @@ -231955,6 +236392,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l id: UBERON:0003405 name: lobar bronchus of left lung def: "A lobar bronchus that is part of a left lung [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left lobar bronchus" EXACT [OBOL:automatic] synonym: "left lung lobar bronchus" EXACT [OBOL:automatic] synonym: "left lung secondary bronchus" EXACT [OBOL:automatic] @@ -231975,6 +236414,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l id: UBERON:0003406 name: cartilage of respiratory system def: "A cartilage element that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "apparatus respiratorius cartilage" EXACT [OBOL:automatic] synonym: "cartilage of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "respiratory system cartilage" EXACT [OBOL:automatic] @@ -231989,6 +236430,8 @@ relationship: part_of UBERON:0001004 ! respiratory system id: UBERON:0003407 name: cartilage of nasal septum def: "A cartilage that is part of a nasal septum [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cartilago septal nasi" EXACT [FMA:59503] synonym: "nasal septum cartilage" EXACT [OBOL:automatic] @@ -232006,6 +236449,8 @@ relationship: part_of UBERON:0001706 ! nasal septum id: UBERON:0003408 name: gland of digestive tract def: "A gland that is part of a digestive tract [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "digestive tract gland" EXACT [OBOL:automatic] synonym: "gland of digestive tract" EXACT [OBOL:automatic] synonym: "gland of lower gastrointestinal tract" EXACT [OBOL:automatic] @@ -232023,6 +236468,8 @@ relationship: part_of UBERON:0001555 ! digestive tract id: UBERON:0003409 name: gland of tongue def: "Any of the mucous, serous, or mixed glands that empty their secretions onto the surface of the tongue." [http://www.merriam-webster.com/medical/lingual%20gland] +subset: human_subset +subset: mouse_subset synonym: "lingual gland" EXACT [OBOL:automatic] synonym: "tongue gland" EXACT [OBOL:automatic] xref: EMAPA:25097 @@ -232035,6 +236482,8 @@ relationship: part_of UBERON:0001723 ! tongue id: UBERON:0003410 name: oropharyngeal gland def: "A gland that is part of a oropharynx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "gland of oral part of pharynx" EXACT [OBOL:automatic] synonym: "gland of oropharynx" EXACT [EMAPA:25095] @@ -232051,6 +236500,8 @@ relationship: part_of UBERON:0001729 ! oropharynx id: UBERON:0003412 name: pelvic appendage bud mesenchyme def: "Mesenchyme that is part of a pelvic appendage bud." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hindlimb bud mesenchyme" NARROW SENSU [EMAPA:16781] synonym: "leg mesenchyme" EXACT [OBOL:automatic] synonym: "lower limb bud mesenchyme" EXACT [EHDAA2:0001035] @@ -232072,6 +236523,8 @@ id: UBERON:0003413 name: pectoral appendage bud mesenchyme alt_id: UBERON:0005703 def: "Mesenchyme that is part of a pectoral appendage bud." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arm mesenchyme" NARROW [OBOL:automatic] synonym: "forelimb bud mesenchyme" NARROW SENSU [EMAPA:16408] synonym: "mesoderm pectoral fin bud" NARROW SENSU [ZFA:0000789] @@ -232094,6 +236547,8 @@ property_value: external_definition "Mesoderm that is part of the pectoral fin b id: UBERON:0003414 name: mesenchyme of mandible def: "Mesenchyme that is part of a developing mandible [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bone of lower jaw mesenchyme" EXACT [OBOL:automatic] synonym: "bone of ventral mandibular arch mesenchyme" EXACT [OBOL:automatic] synonym: "bone organ of lower jaw mesenchyme" EXACT [OBOL:automatic] @@ -232125,6 +236580,8 @@ relationship: part_of UBERON:0001684 ! mandible id: UBERON:0003415 name: mesenchyme of nasal septum def: "Mesenchyme that is part of a developing nasal septum [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "nasal septum mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18443 xref: FMA:312700 @@ -232138,6 +236595,8 @@ relationship: part_of UBERON:0001706 ! nasal septum id: UBERON:0003416 name: mesenchyme of tongue def: "Mesenchyme that is part of a developing tongue [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "tongue mesenchyme" EXACT [EHDAA2:0004614] xref: EHDAA2:0004614 xref: EMAPA:17882 @@ -232151,6 +236610,8 @@ property_value: editor_note "TODO - develops_from" xsd:string id: UBERON:0003417 name: mesenchyme of soft palate def: "Mesenchyme that is part of a developing soft palate [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "soft palate mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18951 is_a: UBERON:0003323 ! mesenchyme of upper jaw @@ -232163,6 +236624,8 @@ relationship: part_of UBERON:0001733 ! soft palate id: UBERON:0003418 name: mesenchyme of submandibular gland def: "Mesenchyme that is part of a developing submandibular gland [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "submandibular gland mesenchyme" EXACT [OBOL:automatic] synonym: "submaxillary gland mesenchyme" RELATED [EMAPA:18814] xref: EMAPA:18814 @@ -232176,6 +236639,8 @@ relationship: part_of UBERON:0001736 ! submandibular gland id: UBERON:0003419 name: mesenchyme of parotid def: "Mesenchyme that is part of a developing parotid gland [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesenchyme of parotid gland" EXACT [OBOL:automatic] synonym: "parotid gland mesenchyme" EXACT [OBOL:automatic] synonym: "parotid mesenchyme" EXACT [OBOL:automatic] @@ -232191,6 +236656,8 @@ relationship: part_of UBERON:0001831 ! parotid gland id: UBERON:0003420 name: mesenchyme of sublingual gland def: "Mesenchyme that is part of a developing sublingual gland [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ductus sublingualis mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of ductus sublingualis" EXACT [OBOL:automatic] synonym: "mesenchyme of Rivinus'gland" EXACT [OBOL:automatic] @@ -232207,6 +236674,8 @@ relationship: part_of UBERON:0001832 ! sublingual gland id: UBERON:0003421 name: mesenchyme of vomeronasal organ def: "Mesenchyme that is part of a developing vomeronasal organ [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "Jacobson's organ mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of Jacobson's organ" EXACT [OBOL:automatic] synonym: "vomeronasal mesenchyme" EXACT [EHDAA2:0004103] @@ -232225,6 +236694,8 @@ id: UBERON:0003422 name: mesenchyme of umbilical cord def: "A gelatinous substance within the umbilical cord, largely made up of mucopolysaccharides (hyaluronic acid and chondroitin sulfate). It also contains some fibroblasts and macrophages. It is derived from Extra Embryonic Mesoderm[WP]." [Wikipedia:Wharton's_jelly] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "umbilical cord mesenchyme" EXACT [OBOL:automatic] synonym: "Wharton's jelly" EXACT [EMAPA:26127] xref: EMAPA:26127 @@ -232245,6 +236716,8 @@ property_value: editor_note "TODO - check" xsd:string id: UBERON:0003424 name: mesenchyme of hard palate def: "Mesenchyme that is part of a developing hard palate [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hard palate mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18954 is_a: UBERON:0003323 ! mesenchyme of upper jaw @@ -232257,6 +236730,8 @@ relationship: part_of UBERON:0003216 ! hard palate id: UBERON:0003425 name: renal lymph node def: "A lymph node that is located in a kidney [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "kidney lymph node" EXACT [OBOL:automatic] synonym: "lymph node of kidney" EXACT [OBOL:automatic] synonym: "para-renal lymph node" BROAD [PMID:22740822] @@ -232276,6 +236751,8 @@ property_value: external_definition "Dorsal to the ipsilateral kidney nearby the id: UBERON:0003426 name: dermis adipose tissue def: "An adipose tissue that is part of a dermis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "adipose tissue of dermis" EXACT [OBOL:automatic] synonym: "dermis fat tissue" EXACT [OBOL:automatic] @@ -232293,6 +236770,8 @@ relationship: part_of UBERON:0002067 ! dermis id: UBERON:0003427 name: abdominal fat pad def: "The encapsulated adipose tissue in the abdomen." [MP:0000010] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "abdomen fat pad" EXACT [OBOL:automatic] synonym: "abdominal fat depot" EXACT [] @@ -232310,6 +236789,8 @@ id: UBERON:0003428 name: gonadal fat pad def: "The encapsulated adipose tissue associated with the ovaries or testes." [MP:0005335] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fat pad of gonad" EXACT [OBOL:automatic] synonym: "fat pad of gonads" EXACT [OBOL:automatic] @@ -232334,6 +236815,8 @@ property_value: external_ontology_notes "we place the amphibian structures here id: UBERON:0003429 name: abdomen nerve def: "A nerve that is part of an abdomen [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "nerve of abdomen" EXACT [OBOL:automatic] xref: MA:0000521 is_a: UBERON:0003825 ! nerve of abdominal segment @@ -232345,6 +236828,8 @@ relationship: part_of UBERON:0000916 ! abdomen id: UBERON:0003430 name: neck nerve def: "A nerve that is part of a neck [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "neck (volume) nerve" EXACT [OBOL:automatic] synonym: "nerve of neck" EXACT [OBOL:automatic] synonym: "nerve of neck (volume)" EXACT [OBOL:automatic] @@ -232359,6 +236844,8 @@ relationship: part_of UBERON:0000974 ! neck id: UBERON:0003431 name: leg nerve def: "A nerve that is part of a leg [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "nerve of leg" EXACT [OBOL:automatic] xref: EMAPA:37343 {source="MA:th"} xref: MA:0000673 @@ -232371,6 +236858,8 @@ relationship: part_of UBERON:0000978 ! leg id: UBERON:0003432 name: chest nerve def: "A nerve that is part of a chest [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anterior thoracic region nerve" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax nerve" EXACT [OBOL:automatic] synonym: "front of thorax nerve" EXACT [OBOL:automatic] @@ -232389,6 +236878,8 @@ relationship: part_of UBERON:0001443 ! chest id: UBERON:0003433 name: arm nerve def: "A nerve that is part of an arm [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "brachial region nerve" EXACT [OBOL:automatic] synonym: "nerve of arm" EXACT [OBOL:automatic] synonym: "nerve of brachial region" EXACT [OBOL:automatic] @@ -232403,6 +236894,8 @@ relationship: part_of UBERON:0001460 ! arm id: UBERON:0003434 name: wrist nerve def: "A nerve that is part of a wrist [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "carpal region nerve" EXACT [OBOL:automatic] synonym: "nerve of carpal region" EXACT [OBOL:automatic] synonym: "nerve of wrist" EXACT [OBOL:automatic] @@ -232417,6 +236910,8 @@ relationship: part_of UBERON:0004452 ! carpal region id: UBERON:0003435 name: pedal digit nerve def: "A nerve that is part of a toe [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "digit of foot nerve" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb nerve" EXACT [OBOL:automatic] synonym: "digitus pedis nerve" EXACT [OBOL:automatic] @@ -232443,6 +236938,8 @@ relationship: part_of UBERON:0001466 ! pedal digit id: UBERON:0003436 name: shoulder nerve def: "A nerve that is part of a shoulder [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "nerve of shoulder" EXACT [OBOL:automatic] xref: EMAPA:37335 {source="MA:th"} xref: MA:0000634 @@ -232455,6 +236952,8 @@ relationship: part_of UBERON:0001467 ! shoulder id: UBERON:0003437 name: eyelid nerve def: "A nerve that innervates an eyelid." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "blepharon nerve" EXACT [OBOL:automatic] synonym: "nerve of blepharon" EXACT [OBOL:automatic] synonym: "nerve of eyelid" EXACT [OBOL:automatic] @@ -232470,6 +236969,8 @@ relationship: innervates UBERON:0001711 ! eyelid id: UBERON:0003438 name: iris nerve def: "Any nerve that innervates the iris." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "ciliary nerve" NARROW [] synonym: "nerve of iris" EXACT [OBOL:automatic] xref: EMAPA:35449 @@ -232485,6 +236986,8 @@ id: UBERON:0003439 name: nerve of trunk region def: "A nerve that is part of the trunk region of the body (not to be confused with a nerve trunk)." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "nerve of torso" EXACT [OBOL:automatic] synonym: "nerve of trunk" EXACT [OBOL:automatic] @@ -232501,6 +237004,8 @@ relationship: part_of UBERON:0002100 ! trunk id: UBERON:0003440 name: limb nerve def: "A nerve that is part of a limb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "nerve of limb" EXACT [OBOL:automatic] xref: EMAPA:37291 {source="MA:th"} xref: MA:0000693 @@ -232514,6 +237019,8 @@ relationship: part_of UBERON:0002101 ! limb id: UBERON:0003441 name: forelimb nerve def: "A nerve that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fore limb nerve" EXACT [OBOL:automatic] synonym: "nerve of fore limb" EXACT [OBOL:automatic] synonym: "nerve of forelimb" EXACT [OBOL:automatic] @@ -232531,6 +237038,8 @@ relationship: part_of UBERON:0002102 ! forelimb id: UBERON:0003442 name: hindlimb nerve def: "A nerve that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hind limb nerve" EXACT [OBOL:automatic] synonym: "nerve of hind limb" EXACT [OBOL:automatic] synonym: "nerve of hindlimb" EXACT [OBOL:automatic] @@ -232547,6 +237056,8 @@ relationship: part_of UBERON:0002103 ! hindlimb id: UBERON:0003443 name: thoracic cavity nerve def: "A nerve that is located in a thoracic cavity [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cavity of chest nerve" EXACT [OBOL:automatic] synonym: "cavity of thorax nerve" EXACT [OBOL:automatic] synonym: "chest cavity nerve" EXACT [OBOL:automatic] @@ -232568,6 +237079,8 @@ property_value: editor_note "consider merging with thoracic nerve. In MA the onl id: UBERON:0003444 name: pelvis nerve def: "A nerve that is part of a pelvis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "nerve of pelvis" EXACT [OBOL:automatic] xref: EMAPA:37269 {source="MA:th"} xref: MA:0000542 @@ -232580,6 +237093,8 @@ relationship: part_of UBERON:0002355 ! pelvic region of trunk id: UBERON:0003445 name: pes nerve def: "A nerve that is part of a foot [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot nerve" EXACT [MA:0000653] synonym: "nerve of foot" EXACT [OBOL:automatic] xref: EMAPA:37347 {source="MA:th"} @@ -232593,6 +237108,8 @@ relationship: part_of UBERON:0002387 ! pes id: UBERON:0003446 name: ankle nerve def: "A nerve that is part of an ankle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "nerve of ankle" EXACT [OBOL:automatic] synonym: "neural network of ankle" RELATED [FMA:86901] synonym: "tarsal region nerve" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -232609,6 +237126,8 @@ property_value: external_ontology_notes "FMA placement dubious" xsd:string {exte id: UBERON:0003447 name: digit nerve of manus def: "A nerve that is part of a finger [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "digit of hand nerve" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb nerve" EXACT [OBOL:automatic] synonym: "digitus manus nerve" EXACT [OBOL:automatic] @@ -232633,6 +237152,8 @@ relationship: part_of UBERON:0002389 ! manual digit id: UBERON:0003448 name: manus nerve def: "A nerve that is part of a manus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hand nerve" EXACT [MA:0000629] synonym: "nerve of hand" EXACT [UBERON:cjm] synonym: "nerve of manus" EXACT [OBOL:automatic] @@ -232647,6 +237168,7 @@ relationship: part_of UBERON:0002398 ! manus id: UBERON:0003449 name: tail intervertebral disc def: "An intervertebral disk that is part of a tail [Automatically generated definition]." [OBOL:automatic] +subset: mouse_subset synonym: "intervertebral disc of post-ventral region" EXACT [UBERON:cjm] synonym: "intervertebral disc of tail" EXACT [OBOL:automatic] synonym: "intervertebral disk of post-ventral region" EXACT [OBOL:automatic] @@ -232664,6 +237186,8 @@ relationship: part_of UBERON:0007812 ! post-anal tail id: UBERON:0003450 name: upper jaw incisor def: "An incisor tooth that is part of a upper jaw [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "incisor of palatoquadrate arch" EXACT [OBOL:automatic] synonym: "incisor of upper jaw" EXACT [OBOL:automatic] @@ -232693,6 +237217,8 @@ relationship: part_of UBERON:0001709 ! upper jaw region id: UBERON:0003451 name: lower jaw incisor def: "An incisor tooth that is part of a lower jaw [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "incisor of lower jaw" EXACT [OBOL:automatic] synonym: "incisor of ventral mandibular arch" EXACT [OBOL:automatic] @@ -232719,6 +237245,8 @@ relationship: part_of UBERON:0001710 ! lower jaw region id: UBERON:0003452 name: trabecula carnea cardiac muscle tissue def: "A portion of cardiac muscle tissue that is part of a trabecula carnea [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cardiac muscle muscle tissue of trabecula carnea" EXACT [OBOL:automatic] synonym: "cardiac muscle of trabecula carnea" EXACT [OBOL:automatic] @@ -232775,6 +237303,8 @@ relationship: part_of UBERON:0002511 ! trabecula carnea id: UBERON:0003453 name: large intestine Peyer's patch def: "A Peyer's patch that is part of a large intestine." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "large intestine Peyer's patch" EXACT [OBOL:automatic] synonym: "Peyer's patch of large intestine" EXACT [OBOL:automatic] synonym: "solitary lymphatic follicle of large intestine" RELATED [FMA:15658] @@ -232792,6 +237322,8 @@ property_value: editor_note "requires expert attention" xsd:string id: UBERON:0003454 name: small intestine Peyer's patch def: "Nodular lymphoid structures on the serosal surface of the small intestine." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "aggregated lymphoid follicle of small intestine" EXACT [FMA:15054] synonym: "noduli lymphoidei aggregati intestini tenuis" EXACT OMO:0003011 [FMA:76466] synonym: "Peyer's patch" BROAD [FMA:15054] @@ -232815,6 +237347,8 @@ property_value: editor_note "add subtypes for jejunum, ileum" xsd:string id: UBERON:0003455 name: inner renal medulla loop of Henle def: "A loop of Henle that is part of a inner medulla of kidney [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "kidney inner medulla loop of Henle" EXACT [MA:0002623] synonym: "loop of Henle, inner medullary portion" EXACT [EMAPA:28352] xref: EMAPA:28352 @@ -232828,6 +237362,8 @@ relationship: part_of UBERON:0001294 ! inner medulla of kidney id: UBERON:0003456 name: respiratory system lymphatic vessel def: "A lymphatic vessel that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "apparatus respiratorius lymph vessel" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lymphatic vessel" EXACT [OBOL:automatic] synonym: "lymph vessel of apparatus respiratorius" EXACT [OBOL:automatic] @@ -232847,6 +237383,8 @@ id: UBERON:0003457 name: head bone def: "A bone that is part of a head [Automatically generated definition]." [OBOL:automatic] comment: Different sources vary regarding which bones are craniofacial; e.g. hyoid bone +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "adult head bone" EXACT [OBOL:automatic] synonym: "adult head bone organ" EXACT [OBOL:automatic] @@ -232868,6 +237406,8 @@ relationship: part_of UBERON:0000033 ! head id: UBERON:0003458 name: neck bone def: "A bone that is part of a neck [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bone of neck" EXACT [OBOL:automatic] synonym: "bone of neck (volume)" EXACT [OBOL:automatic] synonym: "bone organ of neck" EXACT [OBOL:automatic] @@ -232886,6 +237426,8 @@ relationship: part_of UBERON:0000974 ! neck id: UBERON:0003459 name: chest bone def: "A bone that is part of a chest [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anterior thoracic region bone" EXACT [OBOL:automatic] synonym: "anterior thoracic region bone organ" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax bone" EXACT [OBOL:automatic] @@ -232914,6 +237456,8 @@ id: UBERON:0003460 name: arm bone def: "A bone that is part of the region of the forelimb that includes the zeugopod and stylopod. Examples: patella, femur, tibia." [https://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arm bone organ" EXACT [OBOL:automatic] synonym: "bone of arm" EXACT [OBOL:automatic] synonym: "bone of upper extremity" RELATED [GAID:178] @@ -232932,6 +237476,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003461 name: shoulder bone def: "A bone that is connected via a shoulder joint (i.e. glenohumeral or acromioclavicular joints). The shoulder bones are the clavicle, scapula and humerus - but note that these are only considered to be shoulder bones when a true shoulder is present, as in most tetrapods." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bone of shoulder" EXACT [OBOL:automatic] synonym: "shoulder-articulating bone" EXACT [] @@ -232948,6 +237494,8 @@ property_value: external_ontology_notes "this is a forelimb bone in MA, but this id: UBERON:0003462 name: facial bone def: "A bone that is part of a facial skeleton [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bone of facial skeleton" EXACT [OBOL:automatic] synonym: "bone of viscerocranium" RELATED [OBOL:automatic] @@ -232973,6 +237521,8 @@ property_value: editor_note "test whether 'facial bone' is an exact synonym" xsd id: UBERON:0003463 name: trunk bone def: "A bone that is part of a trunk [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bone of torso" EXACT [OBOL:automatic] synonym: "bone of trunk" EXACT [OBOL:automatic] synonym: "bone organ of torso" EXACT [OBOL:automatic] @@ -232994,6 +237544,8 @@ id: UBERON:0003464 name: hindlimb bone def: "A bone that is part of a hindlimb region. Examples: any pes phalanx, femur. Counter-examples: ischium, pubis (they are part of the pelvic girdle)." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "bone of hind limb" EXACT [OBOL:automatic] synonym: "bone of hindlimb" EXACT [OBOL:automatic] synonym: "bone of inferior member" EXACT [OBOL:automatic] @@ -233033,6 +237585,8 @@ consider: UBERON:0011164 id: UBERON:0003466 name: forelimb zeugopod bone def: "A bone that is part of a lower arm [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "antebrachial region bone" EXACT [OBOL:automatic] synonym: "antebrachial region bone organ" EXACT [OBOL:automatic] @@ -233054,6 +237608,8 @@ relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton id: UBERON:0003467 name: sesamoid bone of gastrocnemius def: "A small sesamoid bone situated behind a condyle of the femur." [https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=3470151&group_id=76834, MP:0009005, Wikipedia:Fabella] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fabella" RELATED [MA:0001378, NominaAnatomicaVeterinaria:2005] synonym: "gastrocnemius sesamoid bone" EXACT [OBOL:automatic] @@ -233077,6 +237633,8 @@ id: UBERON:0003468 name: ureteric segment of renal artery def: "The ureteral branches of renal artery are small branches which supply the ureter." [Wikipedia:Ureteral_branches_of_renal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ureteric artery" BROAD [MA:0002074] xref: EMAPA:37676 {source="MA:th"} xref: FMA:70491 @@ -233095,6 +237653,8 @@ relationship: supplies UBERON:0000056 ! ureter id: UBERON:0003469 name: respiratory system artery def: "An artery that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37569 {source="MA:th"} xref: MA:0001804 is_a: UBERON:0001637 ! artery @@ -233108,6 +237668,8 @@ id: UBERON:0003470 name: artery of upper lip def: "The superior labial artery (superior labial branch of facial artery) is larger and more tortuous than the inferior labial artery. It follows a similar course along the edge of the upper lip, lying between the mucous membrane and the Orbicularis oris, and anastomoses with the artery of the opposite side. It supplies the upper lip, and gives off in its course two or three vessels which ascend to the nose; a septal branch ramifies on the nasal septum as far as the point of the nose, and an alar branch supplies the ala of the nose." [Wikipedia:Superior_labial_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria labialis superior" EXACT OMO:0003011 [Wikipedia:Superior_labial_artery] synonym: "ramus labialis superior arteriae facialis" EXACT OMO:0003011 [Wikipedia:Superior_labial_artery] synonym: "superior labial artery" EXACT [FMA:49570] @@ -233131,6 +237693,8 @@ id: UBERON:0003471 name: artery of lower lip def: "The inferior labial artery (inferior labial branch of facial artery) arises near the angle of the mouth; it passes upward and forward beneath the Triangularis and, penetrating the Orbicularis oris, runs in a tortuous course along the edge of the lower lip between this muscle and the mucous membrane. It supplies the labial glands, the mucous membrane, and the muscles of the lower lip; and anastomoses with the artery of the opposite side, and with the mental branch of the inferior alveolar artery." [Wikipedia:Inferior_labial_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria labialis inferior" EXACT OMO:0003011 [Wikipedia:Inferior_labial_artery] synonym: "inferior labial artery" EXACT [FMA:49567] synonym: "inferior labial branch of facial artery" EXACT [FMA:49567] @@ -233154,6 +237718,8 @@ relationship: supplies UBERON:0001835 ! lower lip id: UBERON:0003472 name: cerebellar artery def: "An artery that supplies blood to the cerebellum." [Wikipedia:Cerebellar_artery] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000228 xref: EHDAA:5290 xref: EMAPA:37074 {source="MA:th"} @@ -233175,6 +237741,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e1/Ce id: UBERON:0003473 name: thoracic cavity artery def: "An artery that is part of a thoracic cavity[cjm]." [https://sourceforge.net/tracker/index.php?func=detail&aid=3317815&group_id=76834&atid=1205376] +subset: human_subset +subset: mouse_subset synonym: "thoracic artery" RELATED [MESH:A07.231.114.891] xref: EMAPA:37241 {source="MA:th"} xref: MA:0001902 @@ -233190,6 +237758,8 @@ property_value: external_ontology_notes "in MA, aorta is classified here - but t id: UBERON:0003474 name: meningeal artery def: "One of the arteries supplying a meninix[Automatically generated definition]." [Wikipedia:Meningeal_arteries] +subset: human_subset +subset: mouse_subset xref: EMAPA:37104 {source="MA:th"} xref: GAID:499 xref: MA:0002001 @@ -233205,6 +237775,8 @@ relationship: supplies UBERON:0002360 ! meninx id: UBERON:0003475 name: ureteric vein def: "A vein that is part of a ureter [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ureter vein" EXACT [OBOL:automatic] synonym: "vein of ureter" EXACT [OBOL:automatic] xref: EMAPA:37679 {source="MA:th"} @@ -233219,6 +237791,8 @@ relationship: part_of UBERON:0000056 ! ureter id: UBERON:0003476 name: respiratory system venous blood vessel def: "A vein that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "apparatus respiratorius vein" EXACT [OBOL:automatic] synonym: "respiratory system vein" EXACT [OBOL:automatic] synonym: "vein of apparatus respiratorius" EXACT [OBOL:automatic] @@ -233237,6 +237811,8 @@ id: UBERON:0003477 name: vein of upper lip def: "The inferior labial vein is the vein receiving blood from the upper lip." [Wikipedia:Superior_labial_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "superior labial vein" EXACT [FMA:52538] synonym: "upper lip vein" EXACT [OBOL:automatic] synonym: "vena labialis superior" EXACT OMO:0003011 [] @@ -233257,6 +237833,8 @@ id: UBERON:0003478 name: vein of lower lip def: "The inferior labial vein is the vein receiving blood from the lower lip." [Wikipedia:Inferior_labial_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "inferior labial vein" EXACT [FMA:52541] synonym: "lower lip vein" EXACT [OBOL:automatic] synonym: "vena labialis inferior" EXACT OMO:0003011 [] @@ -233278,6 +237856,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Gr id: UBERON:0003479 name: thoracic cavity vein def: "A vein that is part of a thoracic cavity [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cavity of chest vein" EXACT [OBOL:automatic] synonym: "cavity of thorax vein" EXACT [OBOL:automatic] synonym: "chest cavity vein" EXACT [OBOL:automatic] @@ -233299,6 +237879,8 @@ relationship: located_in UBERON:0002224 ! thoracic cavity id: UBERON:0003480 name: vein of clitoris def: "A vein that is part of a clitoris [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "clitoris vein" EXACT [OBOL:automatic] xref: EMAPA:37201 {source="MA:th"} xref: MA:0002252 @@ -233313,6 +237895,7 @@ relationship: part_of UBERON:0002411 ! clitoris id: UBERON:0003481 name: tail vein def: "A vein that is part of a tail [Automatically generated definition]." [OBOL:automatic, Wikipedia:Tail_vein] +subset: mouse_subset synonym: "caudal vein" RELATED [Wikipedia:Tail_vein] synonym: "post-vent region vein" EXACT [OBOL:automatic] synonym: "vein of post-vent region" EXACT [OBOL:automatic] @@ -233333,6 +237916,8 @@ property_value: editor_note "see also caudal vein" xsd:string id: UBERON:0003482 name: vein of trabecular bone def: "A portion of vein that is part of a trabecular bone tissue [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "spongy bone vein" EXACT [OBOL:automatic] synonym: "trabecular bone tissue vein" EXACT [OBOL:automatic] synonym: "trabecular bone vein" EXACT [OBOL:automatic] @@ -233350,6 +237935,8 @@ relationship: part_of UBERON:0002483 ! trabecular bone tissue id: UBERON:0003483 name: thymus lymphoid tissue def: "A portion of lymphoid tissue that is part of a thymus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lymphoid tissue of thymus" EXACT [OBOL:automatic] synonym: "lymphoid tissue of thymus gland" EXACT [OBOL:automatic] synonym: "thymus gland lymphoid tissue" EXACT [OBOL:automatic] @@ -233369,6 +237956,8 @@ relationship: part_of UBERON:0002370 ! thymus id: UBERON:0003484 name: eye sebaceous gland def: "A sebaceous gland that is part of a camera-type eye. Example: a tarsal gland." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "camera-type eye sebaceous gland" EXACT [OBOL:automatic] synonym: "sebaceous gland of camera-type eye" EXACT [OBOL:automatic] @@ -233386,6 +237975,8 @@ relationship: part_of UBERON:0000019 ! camera-type eye id: UBERON:0003485 name: vagina sebaceous gland def: "A sebaceous gland that is part of a vagina [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "sebaceous gland of vagina" EXACT [OBOL:automatic] xref: EMAPA:37793 {source="MA:th"} @@ -233408,6 +237999,8 @@ consider: UBERON:0011827 id: UBERON:0003487 name: skin sebaceous gland def: "A holocrine gland of the dermis that secretes sebum into hair follicles." [MP:0009535] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cutaneous sebaceous gland" EXACT [] synonym: "sebaceous gland of skin" EXACT [OBOL:automatic] @@ -233421,6 +238014,8 @@ relationship: part_of UBERON:0011932 {source="FMA"} ! pilosebaceous unit id: UBERON:0003488 name: abdominal mammary gland def: "A lactiferous gland that is part of the abdominal region [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "abdomen lactiferous gland" EXACT [OBOL:automatic] synonym: "abdomen lobe of breast" EXACT [OBOL:automatic] synonym: "abdomen lobe of mammary gland" EXACT [OBOL:automatic] @@ -233444,6 +238039,8 @@ property_value: taxon_notes "Female mice normally have five pairs of nipples and id: UBERON:0003489 name: respiratory system capillary endothelium def: "An endothelium of capillary that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "apparatus respiratorius blood capillary endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary vessel endothelium" EXACT [OBOL:automatic] @@ -233481,6 +238078,8 @@ relationship: part_of UBERON:0003526 {is_inferred="true", source="https://github id: UBERON:0003490 name: respiratory system reticular lamina def: "A reticular lamina that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "apparatus respiratorius fibroreticular lamina" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "apparatus respiratorius reticular lamina" EXACT [OBOL:automatic] @@ -233503,6 +238102,8 @@ relationship: part_of UBERON:0001004 ! respiratory system id: UBERON:0003492 name: bronchus reticular lamina def: "A reticular lamina that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchi fibroreticular lamina" EXACT [OBOL:automatic] synonym: "bronchi lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "bronchi reticular lamina" EXACT [OBOL:automatic] @@ -233533,6 +238134,8 @@ relationship: part_of UBERON:0009652 {is_inferred="true", source="https://github id: UBERON:0003493 name: trachea reticular lamina def: "A reticular lamina that is part of a trachea [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fibroreticular lamina of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of windpipe" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of cartilaginous trachea" EXACT [OBOL:automatic] @@ -233555,6 +238158,8 @@ relationship: part_of UBERON:0009653 {is_inferred="true", source="https://github id: UBERON:0003494 name: respiratory system venule def: "A venule that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "apparatus respiratorius venule" EXACT [OBOL:automatic] synonym: "venule of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "venule of respiratory system" EXACT [OBOL:automatic] @@ -233570,6 +238175,8 @@ relationship: part_of UBERON:0001004 ! respiratory system id: UBERON:0003495 name: respiratory system arteriole def: "An arteriole that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37568 {source="MA:th"} xref: MA:0001803 is_a: UBERON:0001980 ! arteriole @@ -233583,6 +238190,8 @@ relationship: part_of UBERON:0003469 {is_inferred="true", source="https://github id: UBERON:0003496 name: head blood vessel def: "A blood vessel that is part of a head [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "adult head blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of adult head" EXACT [OBOL:automatic] synonym: "blood vessel of head" EXACT [OBOL:automatic] @@ -233599,6 +238208,8 @@ relationship: part_of UBERON:0011362 {is_inferred="true", source="https://github id: UBERON:0003497 name: abdomen blood vessel def: "A blood vessel that is part of an abdomen [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of abdomen" EXACT [OBOL:automatic] xref: MA:0000518 is_a: UBERON:0003835 ! abdominal segment blood vessel @@ -233611,6 +238222,8 @@ property_value: seeAlso "UBERON:0012254" xsd:string {notes="abdominal aorta arte id: UBERON:0003498 name: heart blood vessel def: "A blood vessel that is part of a heart [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "blood vessel of heart" EXACT [OBOL:automatic] synonym: "cardiac blood vessel" RELATED [EMAPA:35397] @@ -233627,6 +238240,8 @@ relationship: part_of UBERON:0018674 ! heart vasculature id: UBERON:0003499 name: brain blood vessel def: "A blood vessel that is part of a brain [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "blood vessel of brain" EXACT [OBOL:automatic] xref: EMAPA:35182 @@ -233642,6 +238257,8 @@ relationship: part_of UBERON:0008998 ! vasculature of brain id: UBERON:0003500 name: corneal blood vessel def: "A blood vessel that is part of a cornea [Automatically generated definition]." [https://orcid.org/0000-0002-6601-2165, https://sourceforge.net/tracker/index.php?func=detail&aid=3564332&group_id=36855&atid=440764] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of cornea" EXACT [OBOL:automatic] synonym: "cornea blood vessel" EXACT [OBOL:automatic] xref: EMAPA:36611 @@ -233658,6 +238275,8 @@ property_value: editor_note "follow up on tracker item" xsd:string id: UBERON:0003501 name: retina blood vessel def: "A blood vessel that is part of a retina [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "blood vessel of inner layer of eyeball" EXACT [OBOL:automatic] synonym: "blood vessel of retina" EXACT [OBOL:automatic] @@ -233683,6 +238302,8 @@ relationship: part_of UBERON:0004864 ! vasculature of retina id: UBERON:0003502 name: neck blood vessel def: "A blood vessel that is part of a neck [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of neck" EXACT [OBOL:automatic] synonym: "blood vessel of neck (volume)" EXACT [OBOL:automatic] synonym: "neck (volume) blood vessel" EXACT [OBOL:automatic] @@ -233697,6 +238318,8 @@ relationship: part_of UBERON:0000974 ! neck id: UBERON:0003503 name: leg blood vessel def: "A blood vessel that is part of a leg [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of leg" EXACT [OBOL:automatic] xref: EMAPA:36500 xref: MA:0000669 @@ -233709,6 +238332,8 @@ relationship: part_of UBERON:0000978 ! leg id: UBERON:0003504 name: respiratory system blood vessel def: "A blood vessel that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "apparatus respiratorius blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "blood vessel of respiratory system" EXACT [OBOL:automatic] @@ -233725,6 +238350,8 @@ id: UBERON:0003505 name: trachea blood vessel alt_id: UBERON:0003525 def: "A blood vessel that is part of a trachea." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of trachea" EXACT [OBOL:automatic] xref: EMAPA:35874 xref: MA:0001852 @@ -233738,6 +238365,8 @@ relationship: part_of UBERON:0003126 ! trachea id: UBERON:0003506 name: chest blood vessel def: "A blood vessel that is part of a chest [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anterior thoracic region blood vessel" EXACT [OBOL:automatic] synonym: "anterolateral part of thorax blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of anterior thoracic region" EXACT [OBOL:automatic] @@ -233756,6 +238385,8 @@ relationship: part_of UBERON:0001443 ! chest id: UBERON:0003507 name: arm blood vessel def: "A blood vessel that is part of an arm [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of arm" EXACT [OBOL:automatic] xref: EMAPA:37293 {source="MA:th"} xref: MA:0000591 @@ -233768,6 +238399,8 @@ relationship: part_of UBERON:0001460 ! arm id: UBERON:0003508 name: pedal digit blood vessel def: "A blood vessel that is part of a toe [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of digit of foot" EXACT [OBOL:automatic] synonym: "blood vessel of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "blood vessel of digitus pedis" EXACT [OBOL:automatic] @@ -233794,6 +238427,8 @@ id: UBERON:0003509 name: arterial blood vessel def: "A blood vessel that is part of the arterial system. Includes artery, arteriole and aorta." [https://orcid.org/0000-0002-6601-2165] comment: only in MA - supertype of artery, arteriole, aorta. +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:35144 xref: MA:0000061 @@ -233806,6 +238441,8 @@ relationship: part_of UBERON:0004572 ! arterial system id: UBERON:0003510 name: eyelid blood vessel def: "A blood vessel that is part of a eyelid [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blepharon blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of blepharon" EXACT [OBOL:automatic] synonym: "blood vessel of eyelid" EXACT [OBOL:automatic] @@ -233821,6 +238458,8 @@ relationship: part_of UBERON:0001711 ! eyelid id: UBERON:0003511 name: iris blood vessel def: "A blood vessel that is part of a iris [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "blood vessel of iris" EXACT [OBOL:automatic] xref: EMAPA:37387 {source="MA:th"} @@ -233836,6 +238475,8 @@ relationship: part_of UBERON:0004118 ! vasculature of iris id: UBERON:0003512 name: lung blood vessel def: "A blood vessel that is part of a lung [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "blood vessel of lung" EXACT [OBOL:automatic] synonym: "pulmonary vascular element" RELATED [EMAPA:32867] @@ -233853,6 +238494,8 @@ relationship: part_of UBERON:0002048 ! lung id: UBERON:0003513 name: trunk blood vessel def: "A blood vessel that is part of a trunk [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of torso" EXACT [OBOL:automatic] synonym: "blood vessel of trunk" EXACT [OBOL:automatic] synonym: "torso blood vessel" EXACT [OBOL:automatic] @@ -233867,6 +238510,8 @@ relationship: part_of UBERON:0002100 ! trunk id: UBERON:0003514 name: limb blood vessel def: "A blood vessel that is part of a limb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of limb" EXACT [OBOL:automatic] xref: EMAPA:36598 xref: MA:0000687 @@ -233879,6 +238524,8 @@ relationship: part_of UBERON:0002101 ! limb id: UBERON:0003515 name: forelimb blood vessel def: "A blood vessel that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anteriormost limb blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of anteriormost limb" EXACT [OBOL:automatic] synonym: "blood vessel of fore limb" EXACT [OBOL:automatic] @@ -233898,6 +238545,8 @@ relationship: part_of UBERON:0002102 ! forelimb id: UBERON:0003516 name: hindlimb blood vessel def: "A blood vessel that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of hind limb" EXACT [OBOL:automatic] synonym: "blood vessel of hindlimb" EXACT [OBOL:automatic] synonym: "blood vessel of lower extremity" EXACT [OBOL:automatic] @@ -233914,6 +238563,8 @@ id: UBERON:0003517 name: kidney blood vessel def: "A blood vessel that is part of a kidney [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "blood vessel of kidney" EXACT [OBOL:automatic] @@ -233932,6 +238583,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003518 name: main bronchus blood vessel def: "A blood vessel that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of bronchus principalis" EXACT [OBOL:automatic] synonym: "blood vessel of main bronchus" EXACT [OBOL:automatic] synonym: "blood vessel of primary bronchus" EXACT [OBOL:automatic] @@ -233953,6 +238606,8 @@ relationship: part_of UBERON:0002182 ! main bronchus id: UBERON:0003519 name: thoracic cavity blood vessel def: "A blood vessel that is part of a thoracic cavity [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of cavity of chest" EXACT [OBOL:automatic] synonym: "blood vessel of cavity of thorax" EXACT [OBOL:automatic] synonym: "blood vessel of chest cavity" EXACT [OBOL:automatic] @@ -233973,6 +238628,8 @@ relationship: located_in UBERON:0002224 ! thoracic cavity id: UBERON:0003520 name: pelvis blood vessel def: "A blood vessel that is part of a pelvis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of pelvis" EXACT [OBOL:automatic] xref: EMAPA:37244 {source="MA:th"} xref: MA:0000531 @@ -233985,6 +238642,8 @@ relationship: part_of UBERON:0002355 ! pelvic region of trunk id: UBERON:0003521 name: pes blood vessel def: "A blood vessel that is part of a foot [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of foot" EXACT [OBOL:automatic] synonym: "foot blood vessel" EXACT [MA:0000642] xref: EMAPA:37301 {source="MA:th"} @@ -233998,6 +238657,8 @@ relationship: part_of UBERON:0002387 ! pes id: UBERON:0003522 name: manual digit blood vessel def: "A blood vessel that is part of a finger [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "blood vessel of terminal segment of free upper limb digit" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb blood vessel" EXACT [OBOL:automatic] @@ -234016,6 +238677,8 @@ relationship: part_of UBERON:0002389 ! manual digit id: UBERON:0003523 name: manus blood vessel def: "A blood vessel that is part of a manus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of hand" EXACT [OBOL:automatic] synonym: "blood vessel of manus" EXACT [OBOL:automatic] synonym: "hand blood vessel" EXACT [MA:0000618] @@ -234030,6 +238693,7 @@ relationship: part_of UBERON:0002398 ! manus id: UBERON:0003524 name: tail blood vessel def: "A blood vessel that is part of a tail [Automatically generated definition]." [OBOL:automatic] +subset: mouse_subset synonym: "blood vessel of post-vent region" EXACT [OBOL:automatic] synonym: "blood vessel of tail" EXACT [OBOL:automatic] synonym: "post-vent region blood vessel" EXACT [OBOL:automatic] @@ -234044,6 +238708,8 @@ relationship: part_of UBERON:0007812 ! post-anal tail id: UBERON:0003526 name: respiratory system capillary def: "A capillary that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "apparatus respiratorius blood capillary" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary vessel" EXACT [OBOL:automatic] @@ -234068,6 +238734,8 @@ id: UBERON:0003527 name: kidney capillary def: "A capillary that is part of a kidney [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "blood capillary of kidney" EXACT [OBOL:automatic] synonym: "capillary of kidney" EXACT [OBOL:automatic] @@ -234090,6 +238758,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003528 name: brain gray matter def: "A gray matter that is part of a brain [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "brain grey matter" EXACT [MA:0000810] synonym: "brain grey substance" EXACT [OBOL:automatic] synonym: "gray matter of brain" EXACT [OBOL:automatic] @@ -234109,6 +238779,8 @@ id: UBERON:0003529 name: respiratory system lymphatic vessel endothelium def: "An lymphatic vessel endothelium that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "apparatus respiratorius endothelium of lymph vessel" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lymph vessel endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lymphatic vessel endothelium" EXACT [OBOL:automatic] @@ -234135,6 +238807,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003530 name: pedal digit skin def: "A zone of skin that is part of a toe [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "digit of foot skin" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb skin" EXACT [OBOL:automatic] synonym: "digitus pedis skin" EXACT [OBOL:automatic] @@ -234165,6 +238839,8 @@ relationship: part_of UBERON:0001466 ! pedal digit id: UBERON:0003531 name: forelimb skin def: "A zone of skin that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anteriormost limb skin" EXACT [OBOL:automatic] synonym: "fore limb skin" EXACT [OBOL:automatic] synonym: "skin of fore limb" EXACT [OBOL:automatic] @@ -234188,6 +238864,8 @@ property_value: editor_note "TODO - check free limb vs pectoral complex" xsd:str id: UBERON:0003532 name: hindlimb skin def: "A zone of skin that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hind limb skin" EXACT [OBOL:automatic] synonym: "lower limb skin" EXACT [FMA:23102] synonym: "lower limb skin" EXACT [https://orcid.org/0000-0002-0819-0473] @@ -234211,6 +238889,8 @@ property_value: editor_note "TODO - check free limb vs pelvic complex" xsd:strin id: UBERON:0003533 name: manual digit skin def: "A zone of skin that is part of a finger [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "digit of hand skin" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb skin" EXACT [OBOL:automatic] synonym: "digitus manus skin" EXACT [OBOL:automatic] @@ -234241,6 +238921,7 @@ relationship: part_of UBERON:0002389 ! manual digit id: UBERON:0003534 name: tail skin def: "A zone of skin that is part of a tail [Automatically generated definition]." [OBOL:automatic] +subset: mouse_subset subset: pheno_slim synonym: "post-vent region skin" EXACT [OBOL:automatic] synonym: "skin of post-vent region" EXACT [OBOL:automatic] @@ -234258,6 +238939,8 @@ id: UBERON:0003535 name: vagus X nerve trunk alt_id: UBERON:0006308 def: "A nerve trunk that is part of a vagus nerve." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "trunk of vagal nerve" EXACT [] synonym: "trunk of vagus nerve" EXACT [FMA:6221] synonym: "vagal nerve trunk" EXACT [EMAPA:17272] @@ -234280,6 +238963,8 @@ relationship: part_of UBERON:0001759 ! vagus nerve id: UBERON:0003536 name: right lung alveolar duct def: "An alveolar duct that is part of a right lung [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "alveolar duct of right lung" EXACT [OBOL:automatic] xref: EMAPA:35819 xref: MA:0001785 @@ -234296,6 +238981,8 @@ id: UBERON:0003537 name: left lung alveolar duct def: "An alveolar duct that is part of a left lung [Automatically generated definition]." [OBOL:automatic] comment: Mice have 1 left lobe +subset: human_subset +subset: mouse_subset synonym: "alveolar duct of left lung" EXACT [OBOL:automatic] xref: EMAPA:19183 xref: MA:0001776 @@ -234311,6 +238998,8 @@ relationship: part_of UBERON:0006525 ! left lung alveolar system id: UBERON:0003538 name: right lung bronchiole def: "A bronchiole that is part of a right lung [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchiole of right lung" EXACT [OBOL:automatic] xref: EMAPA:35425 xref: MA:0001787 @@ -234326,6 +239015,8 @@ relationship: part_of UBERON:0002167 ! right lung id: UBERON:0003539 name: left lung bronchiole def: "A bronchiole that is part of a left lung [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchiole of left lung" EXACT [OBOL:automatic] xref: EMAPA:19000 xref: MA:0001778 @@ -234341,6 +239032,8 @@ relationship: part_of UBERON:0002168 ! left lung id: UBERON:0003540 name: right lung terminal bronchiole def: "A terminal bronchiole that is part of a right lung [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchiolus terminalis of right lung" EXACT [OBOL:automatic] synonym: "right lung bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "terminal bronchiole of right lung" EXACT [OBOL:automatic] @@ -234358,6 +239051,8 @@ relationship: part_of UBERON:0002167 ! right lung id: UBERON:0003541 name: left lung terminal bronchiole def: "A terminal bronchiole that is part of a left lung [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchiolus terminalis of left lung" EXACT [OBOL:automatic] synonym: "left lung bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "terminal bronchiole of left lung" EXACT [OBOL:automatic] @@ -234375,6 +239070,8 @@ relationship: part_of UBERON:0002168 ! left lung id: UBERON:0003542 name: right lung respiratory bronchiole def: "A respiratory bronchiole that is part of a right lung [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchiolus respiratorius of right lung" EXACT [OBOL:automatic] synonym: "respiratory bronchiole of right lung" EXACT [OBOL:automatic] synonym: "right lung bronchiolus respiratorius" EXACT [OBOL:automatic] @@ -234392,6 +239089,8 @@ relationship: part_of UBERON:0002167 ! right lung id: UBERON:0003543 name: left lung respiratory bronchiole def: "A respiratory bronchiole that is part of a left lung [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchiolus respiratorius of left lung" EXACT [OBOL:automatic] synonym: "left lung bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "respiratory bronchiole of left lung" EXACT [OBOL:automatic] @@ -234409,6 +239108,8 @@ relationship: part_of UBERON:0002168 ! left lung id: UBERON:0003544 name: brain white matter def: "The regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008026] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "brain white matter of neuraxis" EXACT [OBOL:automatic] synonym: "brain white substance" EXACT [OBOL:automatic] @@ -234436,6 +239137,8 @@ consider: MA:0002741 id: UBERON:0003546 name: distal convoluted tubule macula densa def: "A macula densa that is part of a distal convoluted tubule [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: MA:0001668 is_a: UBERON:0002335 ! macula densa is_a: UBERON:0012275 ! meso-epithelium @@ -234448,6 +239151,8 @@ relationship: part_of UBERON:0002335 {source="MA"} ! macula densa id: UBERON:0003547 name: brain meninx def: "A meninx that is part of a brain [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "brain meninges" EXACT [OBOL:automatic] @@ -234469,6 +239174,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003548 name: forebrain meninges def: "A meninx that is part of a forebrain [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "forebrain meninx" EXACT [OBOL:automatic] synonym: "meninges of forebrain" EXACT [OBOL:automatic] synonym: "meninx of forebrain" EXACT [OBOL:automatic] @@ -234483,6 +239190,8 @@ relationship: part_of UBERON:0001890 ! forebrain id: UBERON:0003549 name: brain pia mater def: "The fibrous membrane forming the innermost of the three coverings that surrounds the brain within the cranial cavity that is firmly attached to the glial capsule." [MP:0009026] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "brain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of brain" EXACT [OBOL:automatic] @@ -234504,6 +239213,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003550 name: forebrain pia mater def: "A pia mater that is part of a forebrain [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "forebrain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of forebrain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of forebrain" EXACT [OBOL:automatic] @@ -234519,6 +239230,8 @@ relationship: part_of UBERON:0001890 ! forebrain id: UBERON:0003551 name: midbrain pia mater def: "A pia mater that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesencephalon pia mater" RELATED [VHOG:0000467] synonym: "midbrain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of midbrain" EXACT [OBOL:automatic] @@ -234540,6 +239253,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003552 name: telencephalon pia mater def: "A pia mater that is part of a telencephalon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pia mater of neuraxis of telencephalon" EXACT [OBOL:automatic] synonym: "pia mater of telencephalon" EXACT [OBOL:automatic] synonym: "telencephalon pia mater of neuraxis" EXACT [OBOL:automatic] @@ -234559,6 +239274,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003553 name: diencephalon pia mater def: "A pia mater that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "between brain pia mater" EXACT [OBOL:automatic] synonym: "between brain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "diencephalon pia mater of neuraxis" EXACT [OBOL:automatic] @@ -234590,6 +239307,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003554 name: hindbrain pia mater def: "A pia mater that is part of a hindbrain [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hindbrain pia mater of neuraxis" EXACT [OBOL:automatic] synonym: "pia mater of hindbrain" EXACT [OBOL:automatic] synonym: "pia mater of neuraxis of hindbrain" EXACT [OBOL:automatic] @@ -234610,6 +239329,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003555 name: spinal cord pia mater def: "A pia mater that is part of a spinal cord [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "pia mater of neuraxis of spinal cord" EXACT [OBOL:automatic] synonym: "pia mater of spinal cord" EXACT [OBOL:automatic] @@ -234632,6 +239353,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003556 name: forebrain arachnoid mater def: "An arachnoid mater that is part of a forebrain [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arachnoid mater of forebrain" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of forebrain" EXACT [OBOL:automatic] synonym: "arachnoid of forebrain" EXACT [OBOL:automatic] @@ -234649,6 +239372,8 @@ relationship: part_of UBERON:0001890 ! forebrain id: UBERON:0003557 name: midbrain arachnoid mater def: "An arachnoid mater that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arachnoid mater of midbrain" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of midbrain" EXACT [OBOL:automatic] synonym: "arachnoid of midbrain" EXACT [OBOL:automatic] @@ -234670,6 +239395,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003558 name: diencephalon arachnoid mater def: "An arachnoid mater that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arachnoid mater of between brain" EXACT [OBOL:automatic] synonym: "arachnoid mater of diencephalon" EXACT [OBOL:automatic] synonym: "arachnoid mater of interbrain" EXACT [OBOL:automatic] @@ -234708,6 +239435,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003559 name: hindbrain arachnoid mater def: "An arachnoid mater that is part of a hindbrain [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arachnoid mater of hindbrain" EXACT [OBOL:automatic] synonym: "arachnoid mater of neuraxis of hindbrain" EXACT [OBOL:automatic] synonym: "arachnoid of hindbrain" EXACT [OBOL:automatic] @@ -234729,6 +239458,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003560 name: spinal cord arachnoid mater def: "An arachnoid mater that is part of a spinal cord [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "arachnoid mater of neuraxis of spinal cord" EXACT [OBOL:automatic] synonym: "arachnoid mater of spinal cord" EXACT [OBOL:automatic] @@ -234750,6 +239481,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003561 name: forebrain dura mater def: "A dura mater that is part of a forebrain." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "dura mater of forebrain" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of forebrain" EXACT [OBOL:automatic] synonym: "forebrain dura mater of neuraxis" EXACT [OBOL:automatic] @@ -234765,6 +239498,8 @@ relationship: part_of UBERON:0001890 ! forebrain id: UBERON:0003562 name: midbrain dura mater def: "A dura mater that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "dura mater of midbrain" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of midbrain" EXACT [OBOL:automatic] synonym: "mesencephalon dura mater" RELATED [VHOG:0000410] @@ -234784,6 +239519,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003563 name: telencephalon dura mater def: "A dura mater that is part of a telencephalon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "dura mater of neuraxis of telencephalon" EXACT [OBOL:automatic] synonym: "dura mater of telencephalon" EXACT [OBOL:automatic] synonym: "telencephalon dura mater of neuraxis" EXACT [OBOL:automatic] @@ -234799,6 +239536,8 @@ relationship: part_of UBERON:0001893 ! telencephalon id: UBERON:0003564 name: diencephalon dura mater def: "A dura mater that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "between brain dura mater" EXACT [OBOL:automatic] synonym: "between brain dura mater of neuraxis" EXACT [OBOL:automatic] synonym: "diencephalon dura mater of neuraxis" EXACT [OBOL:automatic] @@ -234829,6 +239568,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003565 name: hindbrain dura mater def: "A dura mater that is part of a hindbrain [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "dura mater of hindbrain" EXACT [OBOL:automatic] synonym: "dura mater of neuraxis of hindbrain" EXACT [OBOL:automatic] synonym: "hindbrain dura mater of neuraxis" EXACT [OBOL:automatic] @@ -234848,6 +239589,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003566 name: head connective tissue def: "A portion of connective tissue that is part of a head [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "adult head connective tissue" EXACT [OBOL:automatic] synonym: "adult head portion of connective tissue" EXACT [OBOL:automatic] synonym: "adult head textus connectivus" EXACT [OBOL:automatic] @@ -234871,6 +239614,8 @@ relationship: transformation_of UBERON:0005253 ! head mesenchyme id: UBERON:0003567 name: abdomen connective tissue def: "A portion of connective tissue that is part of an abdomen [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "abdomen portion of connective tissue" EXACT [OBOL:automatic] synonym: "abdomen textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of abdomen" EXACT [OBOL:automatic] @@ -234886,6 +239631,8 @@ relationship: part_of UBERON:0000916 ! abdomen id: UBERON:0003568 name: neck connective tissue def: "A portion of connective tissue that is part of a neck [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of neck" EXACT [OBOL:automatic] synonym: "connective tissue of neck (volume)" EXACT [OBOL:automatic] synonym: "neck (volume) connective tissue" EXACT [OBOL:automatic] @@ -234908,6 +239655,8 @@ relationship: part_of UBERON:0000974 ! neck id: UBERON:0003569 name: leg connective tissue def: "A portion of connective tissue that is part of a leg [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of leg" EXACT [OBOL:automatic] synonym: "leg portion of connective tissue" EXACT [OBOL:automatic] synonym: "leg textus connectivus" EXACT [OBOL:automatic] @@ -234924,6 +239673,8 @@ relationship: part_of UBERON:0000978 ! leg id: UBERON:0003570 name: respiratory system connective tissue def: "A portion of connective tissue that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "apparatus respiratorius connective tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius portion of connective tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius textus connectivus" EXACT [OBOL:automatic] @@ -234948,6 +239699,8 @@ id: UBERON:0003571 name: trachea connective tissue def: "A portion of connective tissue that is part of a trachea." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "connective tissue of trachea" EXACT [OBOL:automatic] synonym: "connective tissue of windpipe" EXACT [OBOL:automatic] xref: EMAPA:35876 @@ -234964,6 +239717,8 @@ relationship: transformation_of UBERON:0009505 ! mesenchyme of trachea id: UBERON:0003572 name: chest connective tissue def: "A portion of connective tissue that is part of a chest [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anterior thoracic region connective tissue" EXACT [OBOL:automatic] synonym: "anterior thoracic region portion of connective tissue" EXACT [OBOL:automatic] synonym: "anterior thoracic region textus connectivus" EXACT [OBOL:automatic] @@ -234998,6 +239753,8 @@ relationship: part_of UBERON:0001443 ! chest id: UBERON:0003573 name: arm connective tissue def: "A portion of connective tissue that is part of an arm [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37316 {source="MA:th"} xref: MA:0000593 is_a: UBERON:0003588 ! forelimb connective tissue @@ -235009,6 +239766,8 @@ relationship: part_of UBERON:0001460 ! arm id: UBERON:0003574 name: elbow connective tissue def: "A portion of connective tissue that is part of a elbow [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of cubital region" EXACT [OBOL:automatic] synonym: "connective tissue of elbow" EXACT [OBOL:automatic] synonym: "textus connectivus of cubital region" EXACT [OBOL:automatic] @@ -235025,6 +239784,8 @@ relationship: transformation_of UBERON:0003318 ! mesenchyme of elbow id: UBERON:0003575 name: wrist connective tissue def: "A portion of connective tissue that is part of a wrist [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "carpal region connective tissue" EXACT [OBOL:automatic] synonym: "connective tissue of carpal region" EXACT [OBOL:automatic] synonym: "connective tissue of wrist" EXACT [OBOL:automatic] @@ -235041,6 +239802,8 @@ relationship: transformation_of UBERON:0003319 ! mesenchyme of carpal region id: UBERON:0003576 name: hip connective tissue def: "A portion of connective tissue that is part of a hip [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of hip" EXACT [OBOL:automatic] synonym: "connective tissue of hip region" EXACT [OBOL:automatic] synonym: "connective tissue of regio coxae" EXACT [OBOL:automatic] @@ -235057,6 +239820,8 @@ relationship: transformation_of UBERON:0003320 ! mesenchyme of hip id: UBERON:0003577 name: knee connective tissue def: "A portion of connective tissue that is part of a knee [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of knee" EXACT [OBOL:automatic] synonym: "knee portion of connective tissue" EXACT [OBOL:automatic] xref: EMAPA:37326 {source="MA:th"} @@ -235072,6 +239837,8 @@ relationship: transformation_of UBERON:0003321 ! mesenchyme of knee id: UBERON:0003578 name: pedal digit connective tissue def: "A portion of connective tissue that is part of a toe [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of digit of foot" EXACT [OBOL:automatic] synonym: "connective tissue of digitus pedis" EXACT [OBOL:automatic] synonym: "connective tissue of foot digit" EXACT [OBOL:automatic] @@ -235094,6 +239861,8 @@ relationship: transformation_of UBERON:0005255 ! pedal digit mesenchyme id: UBERON:0003579 name: shoulder connective tissue def: "A portion of connective tissue that is part of a shoulder [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of shoulder" EXACT [OBOL:automatic] synonym: "portion of connective tissue of shoulder" EXACT [OBOL:automatic] synonym: "shoulder portion of connective tissue" EXACT [OBOL:automatic] @@ -235112,6 +239881,8 @@ relationship: transformation_of UBERON:0003322 ! mesenchyme of shoulder id: UBERON:0003580 name: lower respiratory tract connective tissue def: "A portion of connective tissue that is part of a lower respiratory tract [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of lower respiratory tract" EXACT [OBOL:automatic] synonym: "lower respiratory tract portion of connective tissue" EXACT [OBOL:automatic] synonym: "lower respiratory tract textus connectivus" EXACT [OBOL:automatic] @@ -235129,6 +239900,8 @@ relationship: part_of UBERON:0001558 ! lower respiratory tract id: UBERON:0003581 name: eyelid connective tissue def: "A portion of connective tissue that is part of a eyelid [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blepharon connective tissue" EXACT [OBOL:automatic] synonym: "connective tissue of blepharon" EXACT [OBOL:automatic] synonym: "connective tissue of eyelid" EXACT [OBOL:automatic] @@ -235148,6 +239921,8 @@ relationship: transformation_of UBERON:0010330 ! eyelid mesenchyme id: UBERON:0003582 name: nasopharynx connective tissue def: "A portion of connective tissue that is part of a nasopharynx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "connective tissue of nasopharynx" EXACT [OBOL:automatic] synonym: "connective tissue of rhinopharynx" EXACT [OBOL:automatic] @@ -235177,6 +239952,8 @@ relationship: part_of UBERON:0001728 ! nasopharynx id: UBERON:0003583 name: larynx connective tissue def: "A portion of connective tissue that is part of a larynx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of larynx" EXACT [OBOL:automatic] synonym: "laryngeal connective tissue" RELATED [EMAPA:35471] synonym: "larynx portion of connective tissue" EXACT [OBOL:automatic] @@ -235197,6 +239974,8 @@ relationship: part_of UBERON:0001737 ! larynx id: UBERON:0003584 name: mammary gland connective tissue def: "The fibrous supportive tissue of the mammary gland." [https://github.com/obophenotype/uberon/issues/1151, MP:0009507] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "connective tissue of lactiferous gland" EXACT [OBOL:automatic] synonym: "connective tissue of lobe of breast" EXACT [OBOL:automatic] @@ -235225,6 +240004,8 @@ relationship: transformation_of UBERON:0003326 ! mesenchyme of mammary gland id: UBERON:0003585 name: dermis connective tissue def: "A portion of connective tissue that is part of a dermis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "connective tissue of dermis" EXACT [OBOL:automatic] synonym: "dermis portion of connective tissue" EXACT [OBOL:automatic] @@ -235245,6 +240026,8 @@ relationship: part_of UBERON:0002067 ! dermis id: UBERON:0003586 name: trunk connective tissue def: "A portion of connective tissue that is part of a trunk [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of torso" EXACT [OBOL:automatic] synonym: "connective tissue of trunk" EXACT [OBOL:automatic] synonym: "portion of connective tissue of torso" EXACT [OBOL:automatic] @@ -235267,6 +240050,8 @@ relationship: part_of UBERON:0002100 ! trunk id: UBERON:0003587 name: limb connective tissue def: "A portion of connective tissue that is part of a limb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of limb" EXACT [OBOL:automatic] synonym: "limb portion of connective tissue" EXACT [OBOL:automatic] synonym: "limb textus connectivus" EXACT [OBOL:automatic] @@ -235285,6 +240070,8 @@ relationship: transformation_of UBERON:0009749 ! limb mesenchyme id: UBERON:0003588 name: forelimb connective tissue def: "A portion of connective tissue that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of anteriormost limb" EXACT [OBOL:automatic] synonym: "connective tissue of fore limb" EXACT [OBOL:automatic] synonym: "connective tissue of forelimb" EXACT [OBOL:automatic] @@ -235304,6 +240091,8 @@ relationship: transformation_of UBERON:0003859 ! forelimb mesenchyme id: UBERON:0003589 name: hindlimb connective tissue def: "A portion of connective tissue that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of hind limb" EXACT [OBOL:automatic] synonym: "connective tissue of hindlimb" EXACT [OBOL:automatic] synonym: "connective tissue of inferior member" EXACT [OBOL:automatic] @@ -235323,6 +240112,8 @@ id: UBERON:0003590 name: main bronchus connective tissue def: "A portion of connective tissue that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "bronchus principalis connective tissue" EXACT [OBOL:automatic] synonym: "bronchus principalis portion of connective tissue" EXACT [OBOL:automatic] synonym: "bronchus principalis textus connectivus" EXACT [OBOL:automatic] @@ -235347,6 +240138,8 @@ id: UBERON:0003591 name: lobar bronchus connective tissue def: "A portion of connective tissue that is part of a lobar bronchus [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "connective tissue of lobar bronchus" EXACT [OBOL:automatic] synonym: "connective tissue of secondary bronchus" EXACT [OBOL:automatic] xref: EMAPA:37647 {source="MA:th"} @@ -235364,6 +240157,8 @@ relationship: transformation_of UBERON:0004884 ! lobar bronchus mesenchyme id: UBERON:0003592 name: bronchus connective tissue def: "A portion of connective tissue that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchi connective tissue" EXACT [OBOL:automatic] synonym: "bronchi portion of connective tissue" EXACT [OBOL:automatic] synonym: "bronchi textus connectivus" EXACT [OBOL:automatic] @@ -235397,6 +240192,8 @@ relationship: part_of UBERON:0002185 ! bronchus id: UBERON:0003593 name: thoracic cavity connective tissue def: "A portion of connective tissue that is part of a thoracic cavity [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cavity of chest connective tissue" EXACT [OBOL:automatic] synonym: "cavity of chest portion of connective tissue" EXACT [OBOL:automatic] synonym: "cavity of chest textus connectivus" EXACT [OBOL:automatic] @@ -235437,6 +240234,8 @@ relationship: located_in UBERON:0002224 ! thoracic cavity id: UBERON:0003594 name: pelvis connective tissue def: "A portion of connective tissue that is part of a pelvis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of pelvis" EXACT [OBOL:automatic] synonym: "pelvis portion of connective tissue" EXACT [OBOL:automatic] synonym: "pelvis textus connectivus" EXACT [OBOL:automatic] @@ -235453,6 +240252,8 @@ relationship: part_of UBERON:0002355 ! pelvic region of trunk id: UBERON:0003595 name: pes connective tissue def: "A portion of connective tissue that is part of a foot [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of foot" EXACT [OBOL:automatic] synonym: "connective tissue of terminal segment of free lower limb" EXACT [OBOL:automatic] synonym: "foot connective tissue" EXACT [MA:0000644] @@ -235471,6 +240272,8 @@ relationship: transformation_of UBERON:0003328 ! mesenchyme of footplate id: UBERON:0003596 name: ankle connective tissue def: "A portion of connective tissue that is part of an ankle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of ankle" EXACT [OBOL:automatic] synonym: "tarsal region connective tissue" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:37328 {source="MA:th"} @@ -235486,6 +240289,8 @@ relationship: transformation_of UBERON:0010695 ! mesenchyme of tarsal region id: UBERON:0003597 name: manual digit connective tissue def: "A portion of connective tissue that is part of a finger [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of digit of hand" EXACT [OBOL:automatic] synonym: "connective tissue of digitus manus" EXACT [OBOL:automatic] synonym: "connective tissue of finger" EXACT [OBOL:automatic] @@ -235507,6 +240312,8 @@ relationship: transformation_of UBERON:0005257 ! manual digit mesenchyme id: UBERON:0003598 name: manus connective tissue def: "A portion of connective tissue that is part of a hand [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of hand" EXACT [OBOL:automatic] synonym: "connective tissue of terminal segment of free upper limb" EXACT [OBOL:automatic] synonym: "hand connective tissue" EXACT [MA:0000620] @@ -235524,6 +240331,7 @@ relationship: transformation_of UBERON:0009523 ! mesenchyme of handplate id: UBERON:0003599 name: tail connective tissue def: "A portion of connective tissue that is part of a tail [Automatically generated definition]." [OBOL:automatic] +subset: mouse_subset synonym: "connective tissue of post-vent region" EXACT [OBOL:automatic] synonym: "connective tissue of tail" EXACT [OBOL:automatic] synonym: "portion of connective tissue of post-vent region" EXACT [OBOL:automatic] @@ -235546,6 +240354,8 @@ relationship: part_of UBERON:0007812 ! post-anal tail id: UBERON:0003601 name: neck cartilage def: "A cartilage that is part of a neck [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cartilage of neck" EXACT [OBOL:automatic] synonym: "cartilage of neck (volume)" EXACT [OBOL:automatic] synonym: "neck (volume) cartilage" EXACT [OBOL:automatic] @@ -235560,6 +240370,8 @@ relationship: part_of UBERON:0000974 ! neck id: UBERON:0003603 name: lower respiratory tract cartilage def: "A cartilage that is part of a lower respiratory tract [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cartilage of lower respiratory tract" EXACT [OBOL:automatic] xref: EMAPA:37547 {source="MA:th"} xref: MA:0001819 @@ -235576,6 +240388,8 @@ id: UBERON:0003604 name: trachea cartilage def: "The ring-shaped cartilaginous structures that support the trachea." [http://orcid.org/0000-0002-6601-2165, J:97123, MGI:smb, MP:0003120] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cartilage of the trachea" RELATED [Wikipedia:Tracheal_rings] synonym: "cartilage of trachea" EXACT [OBOL:automatic] @@ -235613,6 +240427,8 @@ property_value: taxon_notes "in mammals the rings are incomplete, in avians the id: UBERON:0003605 name: eye skin gland def: "A skin gland that is part of a camera-type eye [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "camera-type eye skin gland" EXACT [OBOL:automatic] synonym: "camera-type eye skin glands" EXACT [OBOL:automatic] @@ -235639,6 +240455,8 @@ relationship: part_of UBERON:0000019 ! camera-type eye id: UBERON:0003606 name: limb long bone def: "A long bone that is part of a limb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "long bone of limb" EXACT [OBOL:automatic] xref: EMAPA:35495 @@ -235653,6 +240471,8 @@ relationship: part_of UBERON:0002101 ! limb id: UBERON:0003607 name: forelimb long bone def: "A long bone that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anteriormost limb long bone" EXACT [OBOL:automatic] synonym: "fore limb long bone" EXACT [OBOL:automatic] synonym: "long bone of anteriormost limb" EXACT [OBOL:automatic] @@ -235675,6 +240495,8 @@ relationship: part_of UBERON:0002102 ! forelimb id: UBERON:0003608 name: hindlimb long bone def: "A long bone that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hind limb long bone" EXACT [OBOL:automatic] synonym: "inferior member long bone" EXACT [OBOL:automatic] synonym: "long bone of hind limb" EXACT [OBOL:automatic] @@ -235694,6 +240516,8 @@ relationship: part_of UBERON:0002103 ! hindlimb id: UBERON:0003609 name: aorta elastic tissue def: "The dense connective tissue which contains predominantly elastic fibers and is found in the tunica media of the aorta wall." [MP:0009862] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "adult aorta elastic connective tissue" EXACT [OBOL:automatic] synonym: "adult aorta elastic tissue" EXACT [OBOL:automatic] @@ -235730,6 +240554,8 @@ relationship: part_of UBERON:0000947 ! aorta id: UBERON:0003610 name: heart elastic tissue def: "The type of heart connective tissue found in the endocardial layer that consists mainly of elastic fibers." [MP:0009863] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cardiac elastic tissue" EXACT [MP:0009863] synonym: "elastic connective tissue of heart" EXACT [OBOL:automatic] @@ -235749,6 +240575,8 @@ relationship: part_of UBERON:0000948 ! heart id: UBERON:0003611 name: respiratory system elastic tissue def: "An elastic tissue that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "apparatus respiratorius elastic connective tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius elastic tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius textus connectivus elasticus" EXACT [OBOL:automatic] @@ -235773,6 +240601,8 @@ relationship: part_of UBERON:0004777 ! respiratory system submucosa id: UBERON:0003613 name: cardiovascular system elastic tissue def: "An elastic tissue that is part of a circulatory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cardiovascular system elastic connective tissue" EXACT [OBOL:automatic] synonym: "cardiovascular system textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "circulatory system elastic connective tissue" EXACT [OBOL:automatic] @@ -235795,6 +240625,8 @@ relationship: part_of UBERON:0004535 ! cardiovascular system id: UBERON:0003614 name: blood vessel elastic tissue def: "Elastic tissue layer that lines a blood vessel layer." [http://orcid.org/0000-0002-6601-2165, https://sourceforge.net/p/obo/mammalian-phenotype-requests/2026/] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "blood vessel elastic connective tissue" EXACT [OBOL:automatic] synonym: "blood vessel textus connectivus elasticus" EXACT [OBOL:automatic] @@ -235818,6 +240650,8 @@ relationship: part_of UBERON:0001981 ! blood vessel id: UBERON:0003615 name: lung elastic tissue def: "Elastic tissue that is part of a lung [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "elastic connective tissue of lung" EXACT [OBOL:automatic] synonym: "elastic tissue of lung" EXACT [OBOL:automatic] synonym: "lung elastic connective tissue" EXACT [OBOL:automatic] @@ -235835,6 +240669,8 @@ relationship: part_of UBERON:0002048 ! lung id: UBERON:0003616 name: bronchus elastic tissue def: "An elastic tissue that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchi elastic connective tissue" EXACT [OBOL:automatic] synonym: "bronchi elastic tissue" EXACT [OBOL:automatic] synonym: "bronchi textus connectivus elasticus" EXACT [OBOL:automatic] @@ -235867,6 +240703,8 @@ id: UBERON:0003617 name: trachea elastic tissue def: "An elastic tissue that is part of a trachea [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cartilaginous trachea elastic connective tissue" EXACT [OBOL:automatic] synonym: "cartilaginous trachea elastic tissue" EXACT [OBOL:automatic] synonym: "cartilaginous trachea textus connectivus elasticus" EXACT [OBOL:automatic] @@ -235898,6 +240736,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003618 name: aorta tunica media def: "The middle layer of the aorta wall, containing the smooth muscle layer and elastic fibers." [MP:0009873] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "adult aorta tunica media" EXACT [OBOL:automatic] synonym: "dorsal aorta tunica media" EXACT [OBOL:automatic] @@ -235921,6 +240761,8 @@ relationship: part_of UBERON:0004663 ! aorta wall id: UBERON:0003619 name: aorta tunica intima def: "The innermost layer of the aorta, containing the endothelium and an inner elastic membrane." [MP:0009872] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "adult aorta tunica intima" EXACT [OBOL:automatic] synonym: "dorsal aorta tunica intima" EXACT [OBOL:automatic] @@ -235946,6 +240788,8 @@ relationship: part_of UBERON:0004663 ! aorta wall id: UBERON:0003620 name: manual digit 1 phalanx def: "A phalanx that is part of a hand digit 1 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fore limb digit 1 phalanx" EXACT [OBOL:accepted] synonym: "hand digit 1 phalanx" EXACT [MA:0001389] @@ -235972,6 +240816,8 @@ relationship: part_of UBERON:5101463 ! manual digit 1 digitopodial skeleton id: UBERON:0003622 name: manual digit 2 def: "2nd digit of the manus." [Wikipedia:Index_finger] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "2nd digit of hand" EXACT [] synonym: "2nd finger" EXACT [] @@ -236011,6 +240857,8 @@ property_value: taxon_notes "This class represents the standard tetrapod configu id: UBERON:0003623 name: manual digit 3 def: "3rd digit of the manus." [Wikipedia:Middle_finger] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "3rd digit of hand" EXACT [] synonym: "3rd finger" EXACT [] @@ -236050,6 +240898,8 @@ property_value: taxon_notes "This class represents the standard tetrapod configu id: UBERON:0003624 name: manual digit 4 def: "4th digit of the manus." [Wikipedia:Ring_finger] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "4th digit of hand" EXACT [] synonym: "4th finger" EXACT [] @@ -236087,6 +240937,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/1/14/R id: UBERON:0003625 name: manual digit 5 def: "5th digit of the manus." [Wikipedia:Little_finger] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "5th digit of hand" EXACT [] synonym: "5th finger" EXACT [] @@ -236126,6 +240978,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ed/Pi id: UBERON:0003631 name: pedal digit 1 def: "1st digit of the hind autopod." [Wikipedia:Hallux] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "big toe" NARROW [] synonym: "digit 1 of hind-paw" EXACT [EMAPA:17460] @@ -236177,6 +241031,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ab/Ri id: UBERON:0003632 name: pedal digit 2 def: "2nd digit of the hind autopod." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "2nd toe" EXACT [] synonym: "digit 2 of hind-paw" EXACT [EMAPA:17463] @@ -236214,6 +241070,8 @@ relationship: part_of UBERON:5003632 ! pedal digit 2 plus metapodial segment id: UBERON:0003633 name: pedal digit 3 def: "3rd digit of the hind autopod." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "3rd toe" EXACT [] synonym: "digit 3 of hind-paw" EXACT [EMAPA:17466] @@ -236251,6 +241109,8 @@ relationship: part_of UBERON:5003633 ! pedal digit 3 plus metapodial segment id: UBERON:0003634 name: pedal digit 4 def: "4th digit of the hind autopod." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "4th toe" EXACT [] synonym: "digit 4 of hind-paw" EXACT [EMAPA:17469] @@ -236285,6 +241145,8 @@ relationship: part_of UBERON:5003634 ! pedal digit 4 plus metapodial segment id: UBERON:0003635 name: pedal digit 5 def: "5th digit of the hind autopod." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Fifth_toe] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "5th toe" EXACT [] synonym: "digit 5 of hind-paw" EXACT [EMAPA:17472] @@ -236331,6 +241193,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Gr id: UBERON:0003636 name: manual digit 2 phalanx def: "A phalanx that is part of a hand digit 2 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "2 nd digit of hand digit long bone" EXACT [OBOL:automatic] synonym: "2 nd digit of hand long bone of digit" EXACT [OBOL:automatic] @@ -236380,6 +241244,8 @@ relationship: part_of UBERON:5103622 ! manual digit 2 digitopodial skeleton id: UBERON:0003637 name: manual digit 3 phalanx def: "A phalanx that is part of a hand digit 3 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "3 rd digit of hand digit long bone" EXACT [OBOL:automatic] synonym: "3 rd digit of hand long bone of digit" EXACT [OBOL:automatic] @@ -236428,6 +241294,8 @@ relationship: part_of UBERON:5103623 ! manual digit 3 digitopodial skeleton id: UBERON:0003638 name: manual digit 4 phalanx def: "A phalanx that is part of a hand digit 4 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "4 th digit of hand digit long bone" EXACT [OBOL:automatic] synonym: "4 th digit of hand long bone of digit" EXACT [OBOL:automatic] @@ -236476,6 +241344,8 @@ relationship: part_of UBERON:5103624 ! manual digit 4 digitopodial skeleton id: UBERON:0003639 name: manual digit 5 phalanx def: "A phalanx that is part of a hand digit 5 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "5 th digit of hand digit long bone" EXACT [OBOL:automatic] synonym: "5 th digit of hand long bone of digit" EXACT [OBOL:automatic] @@ -236527,6 +241397,8 @@ relationship: part_of UBERON:5103625 ! manual digit 5 digitopodial skeleton id: UBERON:0003640 name: pedal digit 1 phalanx def: "A phalanx that is part of a foot digit 1 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "big toe phalanx" EXACT [FMA:32884] synonym: "digit long bone of foot digit 1" EXACT [OBOL:automatic] @@ -236566,6 +241438,8 @@ relationship: part_of UBERON:5103631 ! pedal digit 1 digitopodial skeleton id: UBERON:0003641 name: pedal digit 2 phalanx def: "A phalanx that is part of a foot digit 2 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "digit long bone of foot digit 2" EXACT [OBOL:automatic] synonym: "foot digit 2 digit long bone" EXACT [OBOL:automatic] @@ -236596,6 +241470,8 @@ relationship: part_of UBERON:5103632 ! pedal digit 2 digitopodial skeleton id: UBERON:0003642 name: pedal digit 3 phalanx def: "A phalanx that is part of a foot digit 3 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "digit long bone of foot digit 3" EXACT [OBOL:automatic] synonym: "foot digit 3 digit long bone" EXACT [OBOL:automatic] @@ -236626,6 +241502,8 @@ relationship: part_of UBERON:5103633 ! pedal digit 3 digitopodial skeleton id: UBERON:0003643 name: respiratory system arterial blood vessel def: "An arterial blood vessel that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37565 {source="MA:th"} xref: MA:0001800 is_a: UBERON:0003504 ! respiratory system blood vessel @@ -236638,6 +241516,8 @@ relationship: part_of UBERON:0001004 ! respiratory system id: UBERON:0003644 name: kidney arterial blood vessel def: "An arterial blood vessel that is part of a kidney [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "kidney arterial system" RELATED [EMAPA:31436] xref: EMAPA:31436 @@ -236653,6 +241533,8 @@ id: UBERON:0003645 name: metacarpal bone of digit 1 def: "A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 1." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "finger 1 metacarpus" EXACT [] synonym: "first digit of hand metacarpal" EXACT [OBOL:automatic] @@ -236697,6 +241579,8 @@ id: UBERON:0003646 name: metacarpal bone of digit 2 def: "A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 2." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "2 nd digit of hand metacarpal" EXACT [OBOL:automatic] synonym: "2 nd digit of hand metacarpal bone" EXACT [OBOL:automatic] @@ -236745,6 +241629,8 @@ id: UBERON:0003647 name: metacarpal bone of digit 3 def: "A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 3[Automatically generated definition]." [OBOL:automatic, Wikipedia:Third_metacarpal_bone] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "3 rd digit of hand metacarpal" EXACT [OBOL:automatic] synonym: "3 rd digit of hand metacarpal bone" EXACT [OBOL:automatic] @@ -236796,6 +241682,8 @@ id: UBERON:0003648 name: metacarpal bone of digit 4 def: "A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 4." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "4 th digit of hand metacarpal" EXACT [OBOL:automatic] synonym: "4 th digit of hand metacarpal bone" EXACT [OBOL:automatic] @@ -236844,6 +241732,8 @@ id: UBERON:0003649 name: metacarpal bone of digit 5 def: "A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 5." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "5 th digit of hand metacarpal" EXACT [OBOL:automatic] synonym: "5 th digit of hand metacarpal bone" EXACT [OBOL:automatic] @@ -236894,6 +241784,8 @@ id: UBERON:0003650 name: metatarsal bone of digit 1 def: "A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 1." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "first metatarsal bone" EXACT [FMA:24502] synonym: "foot digit 1 metatarsal bone" EXACT [OBOL:automatic] @@ -236932,6 +241824,8 @@ id: UBERON:0003651 name: metatarsal bone of digit 2 def: "A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 2." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "foot digit 2 metatarsal bone" EXACT [OBOL:automatic] synonym: "hindlimb digit 2 metatarsus" RELATED [EMAPA:19125] @@ -236967,6 +241861,8 @@ id: UBERON:0003652 name: metatarsal bone of digit 3 def: "A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 3[Automatically generated definition]." [OBOL:automatic, Wikipedia:Third_metatarsal_bone] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "foot digit 3 metatarsal bone" EXACT [OBOL:automatic] synonym: "hindlimb cannon bone" NARROW SENSU [https://orcid.org/0000-0002-6601-2165] @@ -237005,6 +241901,8 @@ id: UBERON:0003653 name: metatarsal bone of digit 4 def: "A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 4." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "foot digit 4 metatarsal bone" EXACT [OBOL:automatic] synonym: "fourth metatarsal bone" EXACT [FMA:24505] @@ -237041,6 +241939,8 @@ id: UBERON:0003654 name: metatarsal bone of digit 5 def: "A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 5." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fifth metatarsal bone" EXACT [FMA:24506] synonym: "foot digit 5 metatarsal bone" EXACT [OBOL:automatic] @@ -237076,6 +241976,8 @@ property_value: ray_number "5" xsd:nonNegativeInteger id: UBERON:0003655 name: molar tooth def: "Molars are the rearmost and most complicated kind of tooth in most mammals." [https://github.com/obophenotype/uberon/issues/221, Wikipedia:Molar_(tooth)] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "dens molaris" EXACT [Wikipedia:Molar_(tooth)] synonym: "molar" RELATED [MA:0000350] @@ -237099,6 +242001,8 @@ property_value: taxon_notes "Adult humans have twelve molars, in four groups of id: UBERON:0003656 name: mesopodium bone def: "A bone that is part of a mesopodial skeleton." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "basipodium bone" EXACT [MA:th] synonym: "carpal/tarsal bone" EXACT [MA:0000295] synonym: "mesopod bone" EXACT [] @@ -237120,6 +242024,8 @@ name: limb joint def: "Any joint that is part of a (free) limb." [https://orcid.org/0000-0002-6601-2165] comment: Most limb joints are synovial, but a few such as the tibiofibular joints are syndesmoses subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "joint of limb" EXACT [] synonym: "joint of limb skeletal system" EXACT [OBOL:automatic] synonym: "skeletal limb joint" EXACT [GO:0036023] @@ -237137,6 +242043,8 @@ relationship: part_of UBERON:0002101 ! limb id: UBERON:0003658 name: hip muscle def: "Any muscle organ that is part of a hip [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hip muscle organ" EXACT [OBOL:automatic] synonym: "hip region muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of hip" EXACT [OBOL:automatic] @@ -237154,6 +242062,8 @@ relationship: part_of UBERON:0004475 {source="prolog"} ! musculature of hip id: UBERON:0003659 name: pedal digit muscle def: "Any muscle organ that is part of a toe [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "digit of foot muscle organ" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free lower limb muscle organ" EXACT [OBOL:automatic] synonym: "digitus pedis muscle organ" EXACT [OBOL:automatic] @@ -237180,6 +242090,8 @@ relationship: part_of UBERON:0001466 ! pedal digit id: UBERON:0003660 name: eyelid muscle def: "A muscle that attaches to an eyelid." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "blepharon muscle organ" EXACT [OBOL:automatic] synonym: "eyelid muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of blepharon" EXACT [OBOL:automatic] @@ -237199,6 +242111,8 @@ id: UBERON:0003661 name: limb muscle def: "Any muscle organ that is part of a limb [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "limb muscle organ" EXACT [OBOL:accepted] synonym: "limb skeletal muscle" EXACT [OBOL:exploratory] @@ -237218,6 +242132,8 @@ id: UBERON:0003662 name: forelimb muscle alt_id: UBERON:0005634 def: "Any muscle organ that is part of a forelimb." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arm muscle system" RELATED [EHDAA2:0000141] synonym: "fore limb muscle organ" EXACT [OBOL:automatic] synonym: "forelimb muscle organ" EXACT [OBOL:automatic] @@ -237246,6 +242162,8 @@ name: hindlimb muscle def: "Any muscle organ that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "free lower limb muscle" EXACT [FMA:37368] synonym: "hind limb muscle organ" EXACT [OBOL:automatic] synonym: "hindlimb muscle organ" EXACT [OBOL:automatic] @@ -237273,6 +242191,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003664 name: manual digit muscle def: "Any muscle organ that is part of a finger [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "digit of hand muscle organ" EXACT [OBOL:automatic] synonym: "digit of terminal segment of free upper limb muscle organ" EXACT [OBOL:automatic] synonym: "digitus manus muscle organ" EXACT [OBOL:automatic] @@ -237299,6 +242219,7 @@ relationship: part_of UBERON:0002389 ! manual digit id: UBERON:0003665 name: post-anal tail muscle def: "A muscle organ that attaches to a tail vertebra [Automatically generated definition]." [OBOL:automatic] +subset: mouse_subset synonym: "caudal muscle" EXACT [] synonym: "muscle organ of post-vent region" EXACT [OBOL:automatic] synonym: "muscle organ of tail" EXACT [OBOL:automatic] @@ -237321,6 +242242,8 @@ property_value: external_ontology_notes "the BTO class may possibly refer to an id: UBERON:0003666 name: upper jaw molar def: "A molar tooth that is part of a upper jaw [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "maxillary secondary molar tooth" RELATED [FMA:55720] synonym: "molar tooth of upper jaw" EXACT [OBOL:automatic] synonym: "upper jaw molar tooth" EXACT [OBOL:automatic] @@ -237345,6 +242268,8 @@ relationship: part_of UBERON:0001709 ! upper jaw region id: UBERON:0003667 name: lower jaw molar def: "A molar tooth that is part of a lower jaw [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lower jaw molar tooth" EXACT [OBOL:automatic] synonym: "lower molar" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "lower molar tooth" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -237367,6 +242292,8 @@ relationship: part_of UBERON:0001710 ! lower jaw region id: UBERON:0003668 name: synovial bursa def: "A small fluid-filled sac lined by synovial membrane with an inner capillary layer of slimy fluid. It provides a cushion between bones and tendons and/or muscles around a joint. This helps to reduce friction between the bones and allows free movement. Bursae are filled with synovial fluid and are found around most major joints of the body." [Wikipedia:Synovial_bursa] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "bursa" BROAD [FMA:9692] synonym: "bursa synovialis" RELATED OMO:0003011 [Wikipedia:Synovial_bursa] @@ -237386,6 +242313,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/Gr id: UBERON:0003669 name: fascia lata def: "The deep fascia of the thigh. [WP,unvetted]." [Wikipedia:Fascia_lata] +subset: human_subset +subset: mouse_subset xref: FMA:13902 xref: GAID:117 xref: MESH:D005206 @@ -237402,6 +242331,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e7/Gr id: UBERON:0003670 name: smegma def: "A combination of exfoliated (shed) epithelial cells, transudated skin oils, and moisture. It occurs in both female and male mammalian genitalia[WP]." [Wikipedia:Smegma] +subset: human_subset +subset: mouse_subset xref: FMA:19656 xref: GAID:1170 xref: MESH:D012902 @@ -237416,6 +242347,8 @@ relationship: located_in UBERON:0035144 ! preputial space id: UBERON:0003671 name: anterior cruciate ligament of knee joint def: "A major stabilizing ligament in the knee that attaches the surfaces of the femur and tibia." [ncithesaurus:Anterior_Cruciate_Ligament] +subset: human_subset +subset: mouse_subset synonym: "anterior cruciate ligament" EXACT [FMA:44614] xref: FMA:44614 xref: GAID:122 @@ -237433,6 +242366,8 @@ relationship: attaches_to UBERON:0000981 ! femur id: UBERON:0003672 name: dentition def: "A collection of teeth arranged in some pattern in the mouth or other part of the body. The arrangement may be a simple row, a collection of rows, or a more elaborate structure, such as a toooth whorl." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "collection of teeth" RELATED [] synonym: "dentes" EXACT OMO:0003011 [FMA:75150, FMA:TA] @@ -237460,6 +242395,8 @@ property_value: external_ontology_notes "In FMA this is an anatomical set" xsd:s [Term] id: UBERON:0003673 name: ligamentum flavum +subset: human_subset +subset: mouse_subset synonym: "flaval ligament" RELATED [GAID:126] xref: FMA:13423 xref: GAID:126 @@ -237473,6 +242410,7 @@ is_a: UBERON:0000211 ! ligament id: UBERON:0003674 name: cuspid def: "A tooth that is typically long and pointed and bearing a single cusp." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset subset: pheno_slim synonym: "canine" BROAD [] synonym: "canine (tooth)" RELATED [Wikipedia:Canine_tooth] @@ -237512,6 +242450,8 @@ property_value: taxon_notes "Most species that develop them normally have four p id: UBERON:0003675 name: tooth crown def: "The portion of the tooth covered by enamel." [ncithesaurus:Corona_Dentis] +subset: human_subset +subset: mouse_subset synonym: "anatomical crown" EXACT [FMA:55623] synonym: "corona dentis" EXACT OMO:0003011 [ncithesaurus:Corona_Dentis] synonym: "crown" RELATED [] @@ -237531,6 +242471,8 @@ relationship: part_of UBERON:0001091 ! calcareous tooth id: UBERON:0003676 name: patellar ligament def: "The central portion of the common tendon of the quadriceps femoris. It is attached to the apex of the PATELLA and to the lower part of the tubercle of the TIBIA." [MESH:A02.513.514.475, Wikipedia:Patellar_ligament] +subset: human_subset +subset: mouse_subset synonym: "central band of tendon of quadriceps femoris" EXACT [FMA:44581] synonym: "ligamentum patella" EXACT [FMA:44581] synonym: "patellar tendon" RELATED [] @@ -237552,6 +242494,8 @@ relationship: part_of UBERON:0001485 {source="FMA"} ! knee joint id: UBERON:0003677 name: tooth root def: "The part of a tooth that is implanted in the gum; the root is normally located below the neck of the tooth, covered by cementum rather than enamel, and attached by the periodontal ligament to the alveolar bone." [MP:0011165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "radix corona" EXACT [FMA:55624] synonym: "root of tooth" EXACT [FMA:55624] @@ -237570,6 +242514,8 @@ relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003678 name: tooth apex +subset: human_subset +subset: mouse_subset synonym: "apex of tooth" EXACT [FMA:63000] synonym: "apical foramen" RELATED [GAID:1281] synonym: "tooth apex" EXACT [FMA:63000] @@ -237586,6 +242532,8 @@ name: mouth floor def: "The ventral area of the mouth. In organisms with a tongue, this is the area under the ventral surface of the tongue[ncit, modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Floor_of_the_Mouth] comment: EDITOR_NOTE reclassify after CARO2 overhaul subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "floor of mouth" EXACT [FMA:86592] synonym: "floor of oval cavity" EXACT [] @@ -237607,6 +242555,8 @@ relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0003680 name: posterior cruciate ligament of knee joint +subset: human_subset +subset: mouse_subset synonym: "posterior cruciate ligament" EXACT [FMA:44617] xref: FMA:44617 xref: GAID:129 @@ -237622,6 +242572,8 @@ id: UBERON:0003681 name: masticatory muscle def: "In humans: Muscles arising in the zygomatic arch that close the jaw. Their nerve supply is masseteric from the mandibular division of the trigeminal nerve. (From Stedman, 25th ed)." [MESH:A02.633.567.600, Wikipedia:Muscles_of_mastication] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "jaw muscle" RELATED [] synonym: "muscle of mastication" EXACT [] @@ -237649,6 +242601,8 @@ id: UBERON:0003682 name: palatal muscle def: "The muscles of the palate are the glossopalatine, palatoglossus, levator palati(ni), musculus uvulae, palatopharyngeus, and tensor palati(ni)." [MESH:A02.633.567.750, Wikipedia:Muscles_of_soft_palate_and_fauces] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "muscle of palate" EXACT [FMA:46726] synonym: "musculi palati mollis et faucium" EXACT [] @@ -237680,6 +242634,8 @@ property_value: external_ontology_notes "see also FMA:71438 ! set of muscles of id: UBERON:0003683 name: rotator cuff def: "A group of muscles and their tendons that act to stabilize the shoulder. The four muscles of the rotator cuff are over half of the seven scapulohumeral muscles." [Wikipedia:Rotator_cuff] +subset: human_subset +subset: mouse_subset synonym: "musculotendinous cuff" EXACT [FMA:37018] synonym: "rotator cuff" EXACT [FMA:37018] synonym: "tendinous cuff" EXACT [FMA:37018] @@ -237697,6 +242653,8 @@ id: UBERON:0003684 name: abdominal cavity def: "The part of the ventral body cavity that is within the abdomen proper (excluding the pelvic cavity)." [UBERON:cjm] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "cavitas abdominis" RELATED OMO:0003011 [GAID:17, Wikipedia:Abdominal_cavity] synonym: "cavity of abdominal compartment" EXACT [FMA:12266] synonym: "cavity of compartment of abdomen" EXACT [FMA:12266] @@ -237727,6 +242685,8 @@ property_value: external_ontology_notes "in FMA this contains the pelvic cavity, id: UBERON:0003685 name: cranial suture def: "Fibrous joint in which the articulating bones or cartilages of the skull are connected by sutural ligaments (scant amount of collagenous dense connective tissue). Examples: sagittal suture, frontal suture." [FMA:71385, ISBN:3110148986, Wikipedia:Suture_(joint)] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "cranium suture" EXACT [OBOL:automatic] @@ -237753,6 +242713,8 @@ relationship: part_of UBERON:0003128 ! cranium id: UBERON:0003686 name: tooth socket def: "Dental alveolus (plural, alveoli) are sockets in the jaws in which the roots of teeth are held in the alveolar process of maxilla with the periodontal ligament. The lay term for dental alveoli is tooth sockets. A joint that connect the roots of the teeth and the alveolus are called gomphosis (plural gomphoses). In mammals, tooth sockets are found in the maxilla and the mandible. [WP,unvetted]." [Wikipedia:Dental_alveolus] +subset: human_subset +subset: mouse_subset synonym: "alveolus dentali" RELATED [GAID:217] synonym: "alveolus dentalis" RELATED OMO:0003011 [GAID:217, Wikipedia:Dental_alveolus] synonym: "dental alveolus" EXACT [FMA:57490] @@ -237773,6 +242735,8 @@ id: UBERON:0003687 name: foramen magnum def: "In anatomy, in the occipital bone, the foramen magnum is one of the several oval or circular apertures in the base of the skull, through which the medulla oblongata (an extension of the spinal cord) enters and exits the skull vault. Apart from the transmission of the medulla oblongata and its membranes, the foramen magnum transmits the Spinal Accessory nerve, vertebral arteries, the anterior and posterior spinal arteries, the membrana tectoria and alar ligaments. [WP,unvetted]." [Wikipedia:Foramen_magnum] comment: Design pattern notes: check whether this fits the foramen design pattern +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core xref: AAO:0010826 @@ -237799,6 +242763,8 @@ property_value: external_definition "Foramen in the occipital region of neurocra id: UBERON:0003688 name: omentum def: "A fold of peritoneum originating at the stomach and supporting the viscera." [ncithesaurus:Omentum] +subset: human_subset +subset: mouse_subset xref: CALOHA:TS-2004 xref: EV:0100084 xref: FMA:14650 @@ -237817,6 +242783,8 @@ property_value: has_relational_adjective "omental" xsd:string id: UBERON:0003689 name: sella turcica def: "The sella turcica is a saddle-shaped depression in the sphenoid bone at the base of the human skull. [WP,unvetted]." [Wikipedia:Sella_turcica] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "suprasellar" RELATED [Wikipedia:Sella_turcica] synonym: "Turkey Chair" RELATED OMO:0003011 [Wikipedia:Sella_turcica] @@ -237841,6 +242809,8 @@ name: fused sacrum def: "A collection of sacral vertebrae in the sacral region that are fused and part of the bony pelvis." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "os sacrum" RELATED OMO:0003011 [Wikipedia:Sacrum] synonym: "os sacrum [vertebrae sacrales I - V]" EXACT OMO:0003011 [FMA:16202, FMA:TA] @@ -237863,10 +242833,10 @@ is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0006075 ! sacral region of vertebral column is_a: UBERON:0008001 {source="FMA"} ! irregular bone intersection_of: UBERON:0006075 ! sacral region of vertebral column -intersection_of: derived_from_ancestral_fusion_of UBERON:0001094 ! sacral vertebra +intersection_of: has_fused_element UBERON:0001094 ! sacral vertebra intersection_of: part_of UBERON:0001270 ! bony pelvis relationship: anteriorly_connected_to UBERON:0004621 {gci_relation="part_of", gci_filler="NCBITaxon:9606", source="FMA"} ! lumbar vertebra 5 -relationship: derived_from_ancestral_fusion_of UBERON:0001094 ! sacral vertebra +relationship: has_fused_element UBERON:0001094 ! sacral vertebra relationship: part_of UBERON:0001270 {source="FMA"} ! bony pelvis relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ec/Gray95.png" xsd:anyURI @@ -237879,6 +242849,8 @@ property_value: has_relational_adjective "sacral" xsd:string id: UBERON:0003691 name: epidural space def: "The outermost part of the spinal canal. It is the space within the canal (formed by the surrounding vertebrae) lying outside the dura mater." [Wikipedia:Epidural_space] +subset: human_subset +subset: mouse_subset synonym: "cavum epidurale" EXACT OMO:0003011 [Wikipedia:Epidural_space] synonym: "cavum extradurale" EXACT OMO:0003011 [Wikipedia:Epidural_space] synonym: "epidural cavity" RELATED [Wikipedia:Epidural_space] @@ -237905,6 +242877,8 @@ property_value: taxon_notes "In humans the epidural space contains lymphatics, s id: UBERON:0003692 name: acromioclavicular joint def: "Any joint connecting the acromonion of the scapula and clavicle." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Acromioclavicular_joint] +subset: human_subset +subset: mouse_subset synonym: "acromioclavicular articulation" RELATED [Wikipedia:Acromioclavicular_joint] synonym: "articulatio acromioclavicularis" RELATED OMO:0003011 [Wikipedia:Acromioclavicular_joint] synonym: "scapuloclavicular articulation" RELATED [Wikipedia:Acromioclavicular_joint] @@ -237931,6 +242905,8 @@ id: UBERON:0003693 name: retroperitoneal space def: "Anatomical space in the abdominal cavity behind (retro) the peritoneum. It has no specific delineating anatomical structures. Organs are retroperitoneal if they only have peritoneum on their anterior side." [Wikipedia:Retroperitoneal_space] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "retroperitoneum" EXACT [FMA:15080] synonym: "spatium retroperitoneale" EXACT OMO:0003011 [Wikipedia:Retroperitoneum] @@ -237952,6 +242928,8 @@ property_value: has_relational_adjective "retroperitoneal" xsd:string id: UBERON:0003694 name: atlanto-axial joint def: "The Atlanto-axial joint is of a complicated nature, comprising no fewer than four distinct joints. There is a pivot articulation between the odontoid process of the axis and the ring formed by the anterior arch and the transverse ligament of the atlas." [Wikipedia:Atlanto-axial_joint] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "articulatio atlantoaxialis" RELATED [Wikipedia:Atlanto-axial_joint] synonym: "articulatio atlantoepistrophica" RELATED [Wikipedia:Atlanto-axial_joint] @@ -237980,6 +242958,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gr id: UBERON:0003695 name: metacarpophalangeal joint def: "The metacarpophalangeal joints (MCP) are of the condyloid kind, formed by the reception of the rounded heads of the metacarpal bones into shallow cavities on the proximal ends of the first phalanges, with the exception of that of the thumb, which presents more of the characters of a ginglymoid joint. Arthritis of the MCP is a distinguishing feature of Rheumatoid Arthritis, as opposed to the distal interphalangeal joint in osteoarthritis. [WP,unvetted]." [Wikipedia:Metacarpophalangeal_joint] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "articulationes metacarpophalangeae" RELATED OMO:0003011 [Wikipedia:Metacarpophalangeal_joint] synonym: "carpometacarpophalangeal joint" NARROW SENSU [NCBITaxon:8782] @@ -238015,6 +242995,8 @@ property_value: editor_note "we follow FMA in making these joints part of digits id: UBERON:0003696 name: metatarsophalangeal joint def: "The metatarsophalangeal articulations are the joints between the metatarsal bones of the foot and the proximal bones of the toes . They are condyloid joints meaning an elliptical or rounded surface (of the metatarsal bones) come close to the shallow cavities (of the proximal phalanges). The ligaments are the plantar and two collateral." [Wikipedia:Metatarsophalangeal_articulations] +subset: human_subset +subset: mouse_subset synonym: "articulationes metatarsophalangeae" RELATED OMO:0003011 [Wikipedia:Metatarsophalangeal_articulations] synonym: "metatarsal joint" RELATED [FMA:35222] synonym: "metatarsal-phalangeal joint" EXACT [PHENOSCAPE:ad] @@ -238045,6 +243027,8 @@ property_value: editor_note "we follow FMA in making these joints part of digits id: UBERON:0003697 name: abdominal wall def: "The tissues that surround the organs that are present within the abdominal cavity. The abdominal wall tissue is composed of layers of fat, parietal peritoneum, fascia, and muscles." [ncithesaurus:Abdominal_Wall] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "abdominal wall proper" RELATED [FMA:10429] synonym: "layers of the abdominal wall" RELATED [Wikipedia:Abdominal_wall] @@ -238071,6 +243055,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ee/Sc id: UBERON:0003698 name: subtalar joint def: "A joint of the pes that connects the talus and the calcaneus." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Subtalar_joint] +subset: human_subset +subset: mouse_subset synonym: "articulatio subtalaris" EXACT OMO:0003011 [FMA:35198, FMA:TA] synonym: "articulatio talocalcanea" EXACT OMO:0003011 [FMA:35198, FMA:TA] synonym: "subtalar joint" EXACT [FMA:35198] @@ -238096,6 +243082,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/a/a9/S id: UBERON:0003699 name: pubic symphysis def: "The firm fibrocartilaginous joint in the median plane between the two opposing surfaces of the pubic bones, which are united by an interpubic disc of fibrocartilage as well as the superior and arcuate pubic ligaments." [MP:0009575, Wikipedia:Pubic_symphysis] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "interpubic articulation" RELATED [Wikipedia:Pubic_symphysis] @@ -238129,6 +243117,8 @@ id: UBERON:0003700 name: temporomandibular joint def: "A synovial joint of the jaw that connects the mandible to the temporal bone." [Wikipedia:Temporomandibular_joint] comment: There are two TMJs, one on either side, working in unison. The unique feature of the TMJs is the articular disc. The disc is composed of fibrocartilagenous tissue (like the firm and flexible elastic cartilage of the ear) which is positioned between the two bones that form the joint. The TMJs are one of the only synovial joints in the human body with an articular disc, another being the sternoclavicular joint. The disc divides each joint into two. The lower joint compartment formed by the mandible and the articular disc is involved in rotational movement -- this is the initial movement of the jaw when the mouth opens. The upper joint compartment formed by the articular disk and the temporal bone is involved in translational movement -- this is the secondary gliding motion of the jaw as it is opened widely. The part of the mandible which mates to the under-surface of the disc is the condyle and the part of the temporal bone which mates to the upper surface of the disk is the glenoid (or mandibular) fossa[WP]. +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "articulatio temporomandibularis" RELATED OMO:0003011 [Wikipedia:Temporomandibular_joint] synonym: "dentary-squamosal joint" RELATED [http://palaeos.com/vertebrates/glossary/glossaryT.html] @@ -238166,6 +243156,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a5/Gr id: UBERON:0003701 name: calcaneal tendon def: "The Achilles tendon is a tendon of the posterior leg. It serves to attach the plantaris, gastrocnemius (calf) and soleus muscles to the calcaneus (heel) bone." [Wikipedia:Achilles_tendon] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "Achille's tendon" EXACT [] synonym: "Achilles tendon" EXACT [MA:0002993] @@ -238199,6 +243191,8 @@ property_value: taxon_notes "reduced in non-human primates" xsd:string id: UBERON:0003702 name: inguinal canal def: "The passage in the lower abdominal wall through which the spermatic cord in the male or the round ligament in the female, nerves and vessels pass from the pelvic cavity to the scrotum or labia majora, respectively." [ISBN:0-683-40008-8, MESH:A01.047.412, MP:0003673] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "canalis inguinalis" RELATED OMO:0003011 [Wikipedia:Inguinal_canal] xref: BTO:0005576 @@ -238221,6 +243215,8 @@ property_value: taxon_notes "In tammar wallabies, closes between days 50 and 60 id: UBERON:0003703 name: extrahepatic bile duct def: "Passages external to the liver for the conveyance of bile. These include the common bile duct and the common hepatic duct." [MESH:A03.159.183.079] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "bile duct extrahepatic part" RELATED [MA:0002659] @@ -238240,6 +243236,8 @@ property_value: editor_note "includes all the cystic duct, all the common bile d id: UBERON:0003704 name: intrahepatic bile duct def: "Passages within the liver for the conveyance of bile. Includes right and left hepatic ducts even though these may join outside the liver to form the common hepatic duct." [MESH:A03.159.183.158] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "bile duct intrahepatic part" EXACT [MA:0001630] @@ -238265,6 +243263,8 @@ property_value: external_definition "Duct that collects bile from the bile ductu id: UBERON:0003705 name: Meckel's diverticulum def: "A small bulge in the small intestine present at birth. It is a vestigial remnant of the omphalomesenteric duct." [Wikipedia:Meckel's_diverticulum] +subset: human_subset +subset: mouse_subset synonym: "diverticulum of Meckel" EXACT [FMA:14967] synonym: "ileal diverticulum" EXACT [FMA:14967] synonym: "meckel diverticulum" RELATED [GAID:317] @@ -238285,6 +243285,8 @@ property_value: external_ontology_notes "finding in ncit; GALT in chickens" xsd: id: UBERON:0003706 name: laryngeal vocal fold def: "Either of two pairs of folds of mucous membrane projecting into the larynx." [http://medical-dictionary.thefreedictionary.com/] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "plica vocalis" RELATED [BTO:0005084] synonym: "true vocal cord" EXACT [FMA:55457] @@ -238312,6 +243314,8 @@ property_value: editor_note "we follow FMA in modeling this is mucous membrane p id: UBERON:0003707 name: sinus of Valsalva def: "One of the anatomic dilations of the ascending aorta, which occurs just above the aortic valve." [Wikipedia:Aortic_sinus] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "aortic sinus" EXACT [MP:0010483] synonym: "Petit sinus" EXACT [MP:0010483] @@ -238340,6 +243344,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/54/Gr id: UBERON:0003708 name: carotid sinus def: "A localized dilation of the internal carotid artery at its origin, the common carotid artery bifurcation." [Wikipedia:Carotid_sinus] +subset: human_subset +subset: mouse_subset synonym: "carotid bulb" RELATED [Wikipedia:Carotid_sinus] synonym: "sinus caroticus" RELATED OMO:0003011 [Wikipedia:Carotid_sinus] xref: EMAPA:19320 @@ -238355,6 +243361,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9c/Gr id: UBERON:0003709 name: circle of Willis def: "A circle of arteries that supply blood to the brain. The Circle of Willis comprises the following arteries: Anterior cerebral artery (left and right); Anterior communicating artery; Internal carotid artery (left and right); Posterior cerebral artery (left and right); Posterior communicating artery (left and right).The basilar artery and middle cerebral arteries, supplying the brain, are also considered part of the circle." [Wikipedia:Circle_of_Willis] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "arterial circle" BROAD [Wikipedia:Circle_of_Willis] synonym: "arterial circle of Willis" EXACT [] @@ -238380,6 +243388,8 @@ property_value: taxon_notes "In zebrafish, the circle of vessels comprised of th id: UBERON:0003710 name: vasa vasorum def: "Nutrient blood vessels which supply the walls of large arteries or veins." [MESH:A07.231.836, Wikipedia:Vasa_vasorum] +subset: human_subset +subset: mouse_subset synonym: "vas vasorum" EXACT OMO:0003011 [FMA:77433, FMA:TA] xref: FMA:77433 xref: GAID:526 @@ -238395,6 +243405,8 @@ id: UBERON:0003711 name: brachiocephalic vein def: "The left and right brachiocephalic veins in the upper chest are formed by the union of each corresponding internal jugular vein and subclavian vein. This is at the level of the sternoclavicular joint. These great vessels merge to form the superior vena cava. The brachiocephalic veins are the major veins returning blood to the superior vena cava." [Wikipedia:Brachiocephalic_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "brachiocephalic venous tree" EXACT [FMA:4723] synonym: "innomiate vein" RELATED [Wikipedia:Brachiocephalic_vein] synonym: "innominate trunk" RELATED [Wikipedia:Brachiocephalic_vein] @@ -238425,6 +243437,8 @@ id: UBERON:0003712 name: cavernous sinus def: "The cavernous sinus (or lateral sellar compartment), within the human head, is a large collection of thin-walled veins creating a cavity bordered by the temporal bone of the skull and the sphenoid bone, lateral to the sella turcica." [Wikipedia:Cavernous_sinus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cavernous" RELATED [Wikipedia:Cavernous_sinus] synonym: "cavernous sinus syndrome" RELATED [Wikipedia:Cavernous_sinus] synonym: "cavernous sinuses" RELATED [Wikipedia:Cavernous_sinus] @@ -238449,6 +243463,8 @@ id: UBERON:0003713 name: splenic vein def: "A vein arising from the splenic trabecular vein in the hilum of the spleen that drains into the portal vein." [ncithesaurus:Splenic_Vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lienal vein" RELATED [MA:0002164, Wikipedia:Splenic_vein] synonym: "vena lienalis" RELATED OMO:0003011 [Wikipedia:Splenic_vein] synonym: "vena splenica" EXACT OMO:0003011 [FMA:14331, FMA:TA] @@ -238475,6 +243491,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0003714 name: neural tissue def: "Portion of tissue in the nervous system which consists of neurons and glial cells, and may also contain parts of the vasculature." [FMA:9642] +subset: human_subset +subset: mouse_subset synonym: "nerve tissue" EXACT [FMA:9642] synonym: "nervous tissue" EXACT [FMA:9642] synonym: "portion of neural tissue" EXACT [FMA:9642] @@ -238503,6 +243521,8 @@ id: UBERON:0003715 name: splanchnic nerve def: "The major nerves supplying sympathetic innervation to the abdomen, including the greater, lesser, and lowest (or smallest) splanchnic nerves that are formed by preganglionic fibers from the spinal cord which pass through the paravertebral ganglia and then to the celiac ganglia and plexuses and the lumbar splanchnic nerves carry fibers which pass through the lumbar paravertebral ganglia to the mesenteric and hypogastric ganglia." [MP:0008318] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "splanchnic nerves" RELATED [BAMS:spn] synonym: "visceral nerve" RELATED [Wikipedia:Splanchnic_nerves] @@ -238527,6 +243547,8 @@ id: UBERON:0003716 name: recurrent laryngeal nerve def: "A branch of the vagus nerve that supplies motor function and sensation to the larynx (voice box). It travels within the endoneurium. It is the nerve of the 6th Branchial Arch." [Wikipedia:Recurrent_laryngeal_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "inferior laryngeal nerve" RELATED [GAID:804] synonym: "nervus laryngeus recurrens" EXACT OMO:0003011 [Wikipedia:Recurrent_laryngeal_nerve] synonym: "ramus recurrens" RELATED [AAO:0010754] @@ -238554,6 +243576,8 @@ property_value: external_definition "Branch of the vagus nerve that separates fr id: UBERON:0003718 name: muscle spindle def: "The sensory organs in muscle that are involved in the stretch reflex." [MP:0004069] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "muscle stretch receptor" RELATED [GAID:819] synonym: "neuromuscular spindle" EXACT [FMA:83607] @@ -238572,6 +243596,8 @@ id: UBERON:0003719 name: Pacinian corpuscle alt_id: UBERON:0003717 def: "Any of the rapidly adapting mechanoreceptors found in subcutaneous tissue beneath both hairy and glabrous skin, and which normally contain an afferent nerve fiber surrounded by a capsule with multiple concentric layers." [MP:0000988, Wikipedia:Lamellar_corpuscle] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "corpuscle of golgi-mazzoni" EXACT [FMA:83609] synonym: "corpusculum lamellosum" EXACT OMO:0003011 [Wikipedia:Lamellar_corpuscle] @@ -238610,6 +243636,8 @@ property_value: taxon_notes "may also be present in the mesentery of cats, in pa id: UBERON:0003720 name: anterior cranial fossa def: "The floor of the anterior fossa is formed by the orbital plates of the frontal, the cribriform plate of the ethmoid, and the small wings and front part of the body of the sphenoid; it is limited behind by the posterior borders of the small wings of the sphenoid and by the anterior margin of the chiasmatic groove. The lesser wings of the sphenoid separate the anterior and middle fossae." [Wikipedia:Anterior_cranial_fossa] +subset: human_subset +subset: mouse_subset synonym: "anterior fossa" BROAD [] synonym: "fossa cranii anterior" RELATED OMO:0003011 [Wikipedia:Anterior_cranial_fossa] xref: FMA:9682 @@ -238628,6 +243656,8 @@ id: UBERON:0003721 name: lingual nerve def: "The lingual nerve is a branch of the mandibular nerve (CN V3), itself a branch of the trigeminal nerve, which supplies sensory innervation to the tongue. It also carries fibers from the facial nerve, which return taste information from the anterior two thirds of the tongue." [Wikipedia:Lingual_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lingual branch of trigeminal nerve" EXACT [] synonym: "trigeminal nerve lingual branch" EXACT [] synonym: "trigeminal V nerve lingual branch" EXACT [MA:0001102] @@ -238651,6 +243681,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003722 name: middle cranial fossa def: "The compartment containing the anterior extremities and half the inferior surface of the temporal lobes (TEMPORAL LOBE) of the cerebral hemispheres. Lying posterior and inferior to the anterior cranial fossa (CRANIAL FOSSA, ANTERIOR), it is formed by part of the TEMPORAL BONE and SPHENOID BONE. It is separated from the posterior cranial fossa (CRANIAL FOSSA, POSTERIOR) by crests formed by the superior borders of the petrous parts of the temporal bones[MESH]. The middle fossa, deeper than the anterior cranial fossa, is narrow medially and widens laterally to the sides of the skull. It is separated from the posterior fossa by the clivus and the petrous crest. It is bounded in front by the posterior margins of the lesser wings of the sphenoid bone, the anterior clinoid processes, and the ridge forming the anterior margin of the chiasmatic groove; behind, by the superior angles of the petrous portions of the temporal bones and the dorsum sellC&; laterally by the temporal squamC&, sphenoidal angles of the parietals, and greater wings of the sphenoid. It is traversed by the squamosal, sphenoparietal, sphenosquamosal, and sphenopetrosal sutures[WP]." [MESH:A01.456.830.165, Wikipedia:Middle_cranial_fossa] +subset: human_subset +subset: mouse_subset synonym: "fossa cranii media" RELATED OMO:0003011 [Wikipedia:Middle_cranial_fossa] synonym: "middle fossa" BROAD [Wikipedia:Middle_cranial_fossa] xref: FMA:54369 @@ -238667,6 +243699,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/81/Gr id: UBERON:0003723 name: vestibular nerve def: "The vestibular nerve is one of the two branches of the Vestibulocochlear nerve (the cochlear nerve being the other). It goes to the semicircular canals via the vestibular ganglion. It receives positional information. Axons of the vestibular nerve synapse in the vestibular nucleus on the lateral floor and wall of the fourth ventricle in the pons and medulla. It arises from bipolar cells in the vestibular ganglion, ganglion of Scarpa, which is situated in the upper part of the outer end of the internal auditory meatus. [WP,unvetted]." [Wikipedia:Vestibular_nerve] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "nervus vestibularis" RELATED OMO:0003011 [Wikipedia:Vestibular_nerve] synonym: "scarpa ganglion" RELATED [GAID:840] @@ -238712,6 +243746,8 @@ id: UBERON:0003724 name: musculocutaneous nerve def: "A large branch of the brachial plexus supplying various parts of the upper arm (as flexor muscles) and forearm (as the skin)." [http://www.merriam-webster.com/medical/musculocutaneous%20nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "casserio's nerve" EXACT [FMA:37064] synonym: "nervus musculocutaneus" RELATED OMO:0003011 [Wikipedia:Musculocutaneous_nerve] xref: FMA:37064 @@ -238731,6 +243767,8 @@ id: UBERON:0003725 name: cervical nerve plexus def: "An arrangement of nerve fibers, running from the spine that travels to the head and neck where it innervates skin and muscle." [UBERON:cjm] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cervical nerve plexus" EXACT [FMA:5904] synonym: "cervical plexus" EXACT [FMA:5904] synonym: "plexus cervicalis" EXACT OMO:0003011 [FMA:5904, FMA:TA] @@ -238752,6 +243790,8 @@ id: UBERON:0003726 name: thoracic nerve def: "The twelve spinal nerves on each side of the thorax. They include eleven INTERCOSTAL NERVES and one subcostal nerve. Both sensory and motor, they supply the muscles and skin of the thoracic and abdominal walls." [MESH:A08.800.800.720.800] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "nervi thoracici" RELATED OMO:0003011 [Wikipedia:Thoracic_nerves] synonym: "nervus thoracis" EXACT OMO:0003011 [FMA:5860, FMA:TA] synonym: "pectoral nerve" RELATED [GAID:857] @@ -238772,6 +243812,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003727 name: intercostal nerve def: "The intercostal nerves are the anterior divisions (rami anteriores; ventral divisions) of the thoracic spinal nerves from T1 to T11. Each nerve is connected with the adjoining ganglion of the sympathetic trunk by a gray and a white ramus communicans. The intercostal nerves are distributed chiefly to the thoracic pleura and abdominal peritoneum and differ from the anterior divisions of the other spinal nerves in that each pursues an independent course without plexus formation. The first two nerves supply fibers to the upper limb in addition to their thoracic branches; the next four are limited in their distribution to the parietes of the thorax; the lower five supply the parietes of the thorax and abdomen. The 7th intercostal nerve terminates at the xyphoid process, at the lower end of the sternum. The 10th intercostal nerve terminates at the umbilicus. The twelfth thoracic is distributed to the abdominal wall and groin. [WP,unvetted]." [Wikipedia:Intercostal_nerves] +subset: human_subset +subset: mouse_subset synonym: "anterior ramus of thoracic nerve" EXACT [FMA:6028] synonym: "anterior ramus of thoracic spinal nerve" EXACT [FMA:6028] synonym: "nervi intercostales" RELATED OMO:0003011 [Wikipedia:Intercostal_nerves] @@ -238794,6 +243836,8 @@ id: UBERON:0003728 name: mediastinum def: "The central part of the thoracic cavity enclosed by the left and right pleurae." [UBERON:cjm, Wikipedia:Mediastinum] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "mediastinal part of chest" EXACT [FMA:9826] xref: CALOHA:TS-2338 @@ -238817,6 +243861,8 @@ property_value: has_relational_adjective "mediastinal" xsd:string id: UBERON:0003729 name: mouth mucosa def: "A mucous membrane that lines the mouth." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "buccal mucosa" RELATED [GAID:951] synonym: "mouth mucosa" EXACT [FMA:59660] @@ -238855,6 +243901,8 @@ property_value: external_definition "the mucous membrane epithelium of the mouth id: UBERON:0003820 name: prostate bud def: "A region of the fetal urogenital sinus epithelium destined to become the prostate[GO]." [GO:0060513] +subset: human_subset +subset: mouse_subset synonym: "prostate ductal progenitor" EXACT [PMID:18977204] synonym: "prostate gland bud" RELATED [EMAPA:36141] synonym: "prostate primordium" RELATED [] @@ -238873,6 +243921,8 @@ property_value: function_notes "AR activation releases instructive signals from id: UBERON:0003821 name: metapodium bone def: "A bone of the metapodial skeleton." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "metacarpal or metatarsal bone" EXACT [] synonym: "metacarpal/metatarsal" EXACT [] synonym: "metacarpal/metatarsal bone" EXACT [MA:0000301] @@ -238893,6 +243943,8 @@ relationship: part_of UBERON:0010546 {notes="https://github.com/obophenotype/ube id: UBERON:0003822 name: forelimb stylopod def: "The part of the forelimb between pectoral region and the elbow, corresponding to the humerus." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "arm" RELATED INCONSISTENT [FMA:24890] synonym: "brachial region" EXACT [] @@ -238938,6 +243990,8 @@ id: UBERON:0003823 name: hindlimb zeugopod def: "The middle limb segment of the pelvic free limb, between the autopod and stylopod segments. Includes as parts the hindlimb zeugopodial skeleton, which includes as parts the tibia and fibula, or their cartilage precursors, or evolutionary variants." [PHENOSCAPE:curators] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "crus" EXACT [VSAO:0005060] synonym: "crus of hindlimb" EXACT [] @@ -238993,6 +244047,8 @@ property_value: terminology_notes "Naming conventions for pod terms under discus id: UBERON:0003824 name: nerve of thoracic segment def: "A nerve that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "nerve of thorax" EXACT [OBOL:automatic] synonym: "thoracic segment nerve" EXACT [MA:0000562] synonym: "thorax nerve" EXACT [OBOL:automatic] @@ -239010,6 +244066,8 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk id: UBERON:0003825 name: nerve of abdominal segment def: "A nerve that is part of an abdominal segment of trunk [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "abdominal segment nerve" EXACT [MA:0000528] xref: EMAPA:37061 {source="MA:th"} xref: MA:0000528 @@ -239023,6 +244081,8 @@ id: UBERON:0003826 name: upper leg bone def: "A bone that is part of a hindlimb stylopod [Automatically generated definition]." [https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376, OBOL:automatic] comment: May be merged into femur. See https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376 +subset: human_subset +subset: mouse_subset synonym: "femur" RELATED [https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376] xref: EMAPA:35893 xref: MA:0000682 @@ -239035,6 +244095,8 @@ relationship: part_of UBERON:0000376 ! hindlimb stylopod id: UBERON:0003827 name: thoracic segment bone def: "A bone that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bone of thorax" EXACT [OBOL:automatic] synonym: "bone organ of thorax" EXACT [OBOL:automatic] synonym: "thorax bone" EXACT [OBOL:automatic] @@ -239053,6 +244115,8 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk id: UBERON:0003828 name: abdominal segment bone def: "A bone that is part of an abdominal segment of trunk [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "abdominal segment of trunk bone" EXACT [OBOL:automatic] synonym: "abdominal segment of trunk bone organ" EXACT [OBOL:automatic] synonym: "bone of abdominal segment of trunk" EXACT [OBOL:automatic] @@ -239069,6 +244133,8 @@ relationship: part_of UBERON:0002417 ! abdominal segment of trunk id: UBERON:0003829 name: urethra muscle tissue def: "Any muscle tissue that is part of the urethra." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "urethral muscle layer" RELATED [MA:0002649] xref: EMAPA:37787 {source="MA:th"} xref: MA:0002649 @@ -239082,6 +244148,8 @@ relationship: part_of UBERON:0000057 ! urethra id: UBERON:0003830 name: thoracic segment muscle def: "Any muscle organ that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscle organ of thorax" EXACT [OBOL:automatic] synonym: "thorax muscle organ" EXACT [OBOL:automatic] synonym: "upper body muscle" RELATED [MA:0000561] @@ -239097,6 +244165,8 @@ relationship: part_of UBERON:0004464 {source="prolog"} ! musculature of thorax id: UBERON:0003831 name: respiratory system muscle def: "Any muscle organ that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "apparatus respiratorius muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "muscle organ of respiratory system" EXACT [OBOL:automatic] @@ -239113,6 +244183,8 @@ relationship: part_of UBERON:0001004 ! respiratory system id: UBERON:0003832 name: esophagus muscle def: "Any muscle organ that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "esophageal muscle" EXACT [] synonym: "esophagus muscle organ" EXACT [OBOL:automatic] synonym: "gullet muscle organ" EXACT [OBOL:automatic] @@ -239136,6 +244208,8 @@ property_value: editor_note "merge muscle and muscle layer?" xsd:string id: UBERON:0003833 name: abdominal segment muscle def: "A muscle organ that is part of an abdominal segment of trunk [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "abdominal segment of trunk muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of abdominal segment of trunk" EXACT [OBOL:automatic] xref: EMAPA:37060 {source="MA:th"} @@ -239150,6 +244224,8 @@ relationship: part_of UBERON:0002417 ! abdominal segment of trunk id: UBERON:0003834 name: thoracic segment blood vessel def: "A blood vessel that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of thorax" EXACT [OBOL:automatic] synonym: "thorax blood vessel" EXACT [OBOL:automatic] synonym: "upper body blood vessel" RELATED [MA:0000558] @@ -239164,6 +244240,8 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk id: UBERON:0003835 name: abdominal segment blood vessel def: "A blood vessel that is part of an abdominal segment of trunk [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "abdominal segment of trunk blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of abdominal segment of trunk" EXACT [OBOL:automatic] xref: EMAPA:37057 {source="MA:th"} @@ -239177,6 +244255,8 @@ relationship: part_of UBERON:0002417 ! abdominal segment of trunk id: UBERON:0003836 name: abdominal segment skin def: "A skin of body that is part of an abdominal segment of trunk [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "abdominal segment of trunk skin" EXACT [OBOL:automatic] synonym: "skin of abdominal segment of trunk" EXACT [OBOL:automatic] xref: EMAPA:37063 {source="MA:th"} @@ -239191,6 +244271,8 @@ relationship: part_of UBERON:0002417 ! abdominal segment of trunk id: UBERON:0003837 name: thoracic segment connective tissue def: "A portion of connective tissue that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of thorax" EXACT [OBOL:automatic] synonym: "portion of connective tissue of thorax" EXACT [OBOL:automatic] synonym: "textus connectivus of thorax" EXACT [OBOL:automatic] @@ -239209,6 +244291,8 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk id: UBERON:0003838 name: abdominal segment connective tissue def: "A portion of connective tissue that is part of an abdominal segment of trunk [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "abdominal segment of trunk connective tissue" EXACT [OBOL:automatic] synonym: "abdominal segment of trunk portion of connective tissue" EXACT [OBOL:automatic] synonym: "abdominal segment of trunk textus connectivus" EXACT [OBOL:automatic] @@ -239226,6 +244310,8 @@ relationship: part_of UBERON:0002417 ! abdominal segment of trunk id: UBERON:0003839 name: forelimb joint def: "A limb joint that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anteriormost limb joint of limb" EXACT [OBOL:automatic] synonym: "anteriormost limb limb joint" EXACT [OBOL:automatic] @@ -239261,6 +244347,8 @@ relationship: part_of UBERON:0002102 ! forelimb id: UBERON:0003840 name: hindlimb joint def: "A limb joint that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hind limb joint of limb" EXACT [OBOL:automatic] synonym: "hind limb limb joint" EXACT [OBOL:automatic] @@ -239293,6 +244381,8 @@ relationship: part_of UBERON:0002103 ! hindlimb id: UBERON:0003841 name: autopod joint def: "A limb joint that is part of an autopod [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "autopod joint of limb" EXACT [OBOL:automatic] synonym: "autopod limb joint" EXACT [OBOL:automatic] synonym: "distal free limb segment joint of limb" EXACT [OBOL:automatic] @@ -239314,6 +244404,8 @@ id: UBERON:0003842 name: neural tube lumen alt_id: UBERON:0005713 def: "An anatomical space that surrounded_by a neural tube." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cavity of neural tube" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "central lumen" RELATED [] synonym: "lumen of neural tube" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -239339,6 +244431,8 @@ property_value: homology_notes "(...) at some stage of its development, every ch id: UBERON:0003843 name: dental epithelium def: "Epithelium that is part of a developing tooth or dental organ." [https://github.com/cerivs/zebrafish-anatomical-ontology/issues/107, ZFA:0005134] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "dental epithelia" EXACT OMO:0003004 [ZFA:0005134] synonym: "dental epithelium" EXACT [ZFA:0005134] @@ -239368,6 +244462,8 @@ property_value: editor_note "todo - full developmental relationships" xsd:string id: UBERON:0003844 name: upper eyelid epithelium def: "An epithelium that is part of an upper eyelid [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of superior eyelid" EXACT [OBOL:automatic] synonym: "epithelial tissue of upper eyelid" EXACT [OBOL:automatic] synonym: "epithelium of superior eyelid" EXACT [OBOL:automatic] @@ -239387,6 +244483,8 @@ relationship: part_of UBERON:0001712 ! upper eyelid id: UBERON:0003845 name: lower eyelid epithelium def: "An epithelium that is part of a lower eyelid [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of inferior eyelid" EXACT [OBOL:automatic] synonym: "epithelial tissue of lower eyelid" EXACT [OBOL:automatic] synonym: "epithelium of inferior eyelid" EXACT [OBOL:automatic] @@ -239407,6 +244505,8 @@ id: UBERON:0003846 name: thymus epithelium def: "An epithelium that is part of a thymus, forming a supporting framework[MP,modified]." [MP:0009544] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epithelial tissue of thymus" EXACT [OBOL:automatic] synonym: "epithelial tissue of thymus gland" EXACT [OBOL:automatic] @@ -239442,6 +244542,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003847 name: thyroid artery def: "An artery that supplies a thyroid gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: AAO:0010490 xref: EHDAA2:0002029 xref: EHDAA:7372 @@ -239462,6 +244564,8 @@ property_value: external_definition "Part of the external carotid which supplies id: UBERON:0003848 name: gonadal vein def: "In medicine, gonadal vein refers to the blood vessel that carrying blood away from the gonad (testis, ovary) toward the heart. Females : ovarian vein Males : testicular vein [WP,unvetted]." [Wikipedia:Gonadal_vein] +subset: human_subset +subset: mouse_subset synonym: "gonad vein" EXACT [OBOL:automatic] synonym: "gonada vein" EXACT [OBOL:automatic] synonym: "vein of gonad" EXACT [OBOL:automatic] @@ -239483,6 +244587,8 @@ id: UBERON:0003849 name: mesencephalic neural crest def: "A neural crest that has_potential_to_developmentally_contribute_to a midbrain." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "mesencephalic neural crest" EXACT [ZFA:0000935] synonym: "neural crest midbrain" EXACT [ZFA:0000935] @@ -239504,6 +244610,8 @@ id: UBERON:0003850 name: telencephalon neural crest def: "A neural crest that has_potential_to_developmentally_contribute_to a telencephalon." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "neural crest telencephalon" EXACT [ZFA:0000812] xref: EFO:0003574 @@ -239523,6 +244631,8 @@ id: UBERON:0003851 name: diencephalon neural crest def: "A neural crest that has_potential_to_developmentally_contribute_to a diencephalon." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "diencephalic neural crest" EXACT [ZFA:0000811] synonym: "future diencephalon neural crest" EXACT [EHDAA2:0000603] synonym: "neural crest diencephalon" EXACT [ZFA:0000811] @@ -239543,6 +244653,8 @@ property_value: homology_notes "We conclude this section by listing some of the id: UBERON:0003852 name: rhombencephalon neural crest def: "A neural crest that has_potential_to_developmentally_contribute_to a hindbrain." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "neural crest hindbrain" EXACT [ZFA:0007063] synonym: "rhombencephalic neural crest" EXACT [ZFA:0007063] @@ -239565,6 +244677,8 @@ property_value: homology_notes "We conclude this section by listing some of the id: UBERON:0003853 name: spinal cord neural crest def: "A neural crest that has_potential_to_developmentally_contribute_to a spinal cord." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "neural crest spinal cord" EXACT [VHOG:0001006] synonym: "spinal neural crest" RELATED [VHOG:0001006] xref: EHDAA:696 @@ -239581,6 +244695,8 @@ property_value: homology_notes "We conclude this section by listing some of the id: UBERON:0003854 name: spinal cord neural plate def: "A neural plate that develops_from a future spinal cord." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "neural plate of spinal cord" EXACT [OBOL:automatic] xref: FMA:312957 xref: TAO:0007021 @@ -239597,6 +244713,8 @@ property_value: homology_notes "(...) at some stage of its development, every ch id: UBERON:0003855 name: gonad mesenchyme def: "Mesenchyme that is part of a developing gonad [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "gonada mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of gonad" EXACT [OBOL:automatic] @@ -239615,6 +244733,8 @@ relationship: part_of UBERON:0000991 ! gonad id: UBERON:0003856 name: uncondensed odontogenic mesenchyme def: "Mesenchyme enclosed by a dental organ that gives rise to an odontogenic papilla." [https://github.com/cerivs/zebrafish-anatomical-ontology/issues/107, https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "dental mesenchyme" EXACT [ZFA:0005139] synonym: "dental organ mesenchyme" EXACT [OBOL:automatic] @@ -239642,6 +244762,8 @@ property_value: external_definition "Mesenchyme enclosed by dental organ.[TAO]" id: UBERON:0003857 name: upper eyelid mesenchyme def: "Mesenchyme that is part of a developing upper eyelid [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesenchyme of superior eyelid" EXACT [OBOL:automatic] synonym: "mesenchyme of upper eyelid" EXACT [OBOL:automatic] synonym: "superior eyelid mesenchyme" EXACT [OBOL:automatic] @@ -239659,6 +244781,8 @@ relationship: part_of UBERON:0001712 ! upper eyelid id: UBERON:0003858 name: lower eyelid mesenchyme def: "Mesenchyme that is part of a developing lower eyelid [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "inferior eyelid mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of inferior eyelid" EXACT [OBOL:automatic] synonym: "mesenchyme of lower eyelid" EXACT [OBOL:automatic] @@ -239676,6 +244800,8 @@ relationship: part_of UBERON:0001713 ! lower eyelid id: UBERON:0003859 name: forelimb mesenchyme def: "Mesenchyme that is part of a developing forelimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anteriormost limb mesenchyme" EXACT [OBOL:automatic] synonym: "fore limb mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of anteriormost limb" EXACT [OBOL:automatic] @@ -239697,6 +244823,8 @@ relationship: part_of UBERON:0002102 ! forelimb id: UBERON:0003860 name: hindlimb mesenchyme def: "Mesenchyme that is part of a developing hindlimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hind limb mesenchyme" EXACT [OBOL:automatic] synonym: "inferior member mesenchyme" EXACT [OBOL:automatic] synonym: "lower extremity mesenchyme" EXACT [OBOL:automatic] @@ -239716,6 +244844,8 @@ id: UBERON:0003861 name: neural arch def: "Posterior part of a vertebra that consists of a pair of pedicles and a pair of laminae, and supports seven processes: four articular processes, two transverse processes one spinous process[WP]. ZFA: A neural arch encloses the neural canal and typically meets its partner to form a neural spine." [Wikipedia:Vertebral_arch] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "arcus vertebra" EXACT [Wikipedia:Vertebral_arch] @@ -239752,6 +244882,8 @@ property_value: taxon_notes "tiny neural arches present in Hagfish (which lack a id: UBERON:0003862 name: pedal digit 4 phalanx def: "A phalanx that is part of a foot digit 4 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "digit long bone of foot digit 4" EXACT [OBOL:automatic] synonym: "foot digit 4 digit long bone" EXACT [OBOL:automatic] @@ -239782,6 +244914,8 @@ relationship: part_of UBERON:5103634 ! pedal digit 4 digitopodial skeleton id: UBERON:0003863 name: pedal digit 5 phalanx def: "A phalanx that is part of a foot digit 5 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "digit long bone of foot digit 5" EXACT [OBOL:automatic] synonym: "foot digit 5 digit long bone" EXACT [OBOL:automatic] @@ -239814,6 +244948,8 @@ relationship: part_of UBERON:5103635 ! pedal digit 5 digitopodial skeleton id: UBERON:0003864 name: middle phalanx of manus def: "A middle phalanx that is part of a finger [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hand middle phalanx" EXACT [MA:0001394] synonym: "middle manual phalanx" EXACT [] @@ -239842,6 +244978,8 @@ id: UBERON:0003865 name: distal phalanx of manus def: "A distal phalanx that is part of a finger [Automatically generated definition]." [OBOL:automatic] comment: This is typically proximally connected to the middle phalanx of manus, except in some cases such as the manual digit 1 (thumb) of many mammals such as humans, where it connects to the proximal phalanx. It always connects to some phalanx, by definition +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal manual phalanx" EXACT [] synonym: "distal phalanx of finger" EXACT [FMA:75818] @@ -239871,6 +245009,8 @@ relationship: proximally_connected_to UBERON:0001436 ! phalanx of manus id: UBERON:0003866 name: middle phalanx of pes def: "A middle phalanx that is part of a toe [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "foot middle phalanx" EXACT [MA:0001386] synonym: "middle pedal phalanx" EXACT [] @@ -239895,6 +245035,8 @@ id: UBERON:0003867 name: distal phalanx of pes def: "A distal phalanx that is part of a pedal digit [Automatically generated definition]." [OBOL:automatic] comment: This is typically proximally connected to the middle phalanx of pes, except in some cases such as the pedal digit 1 (big toe) in many mammals such as humans, where it connects to the proximal phalanx. It always connects to some phalanx, by definition +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal pedal phalanx" EXACT [] synonym: "distal phalanx of foot" EXACT [] @@ -239924,6 +245066,8 @@ relationship: proximally_connected_to UBERON:0001449 ! phalanx of pes id: UBERON:0003868 name: proximal phalanx of pes def: "A proximal phalanx that is part of a pedal digit [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "foot proximal phalanx" EXACT [MA:0001387] synonym: "phalanx proximalis pedis" EXACT OMO:0003011 [FMA:75828, FMA:TA] @@ -239951,6 +245095,8 @@ relationship: proximally_connected_to UBERON:0001448 ! metatarsal bone id: UBERON:0003869 name: presumptive ganglion def: "A presumptive structure that has the potential to develop into a ganglion." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure intersection_of: has_potential_to_develop_into UBERON:0000045 ! ganglion @@ -239965,6 +245111,8 @@ is_obsolete: true id: UBERON:0003876 name: hippocampal field def: "A part or parts of the hippocampus that have a particular function." [MGI:csmith, MP:0008262] +subset: human_subset +subset: mouse_subset subset: non_informative subset: pheno_slim synonym: "hippocampal region" RELATED [BAMS:HIP] @@ -239987,6 +245135,8 @@ id: UBERON:0003881 name: CA1 field of hippocampus def: "Part of hippocampus proper bounded by CA2 and the subiculum, characterized by pyramidal neurons that receive projections from pyramidal neurons of CA3 via the Schaffer collaterals." [BIRNLEX:1197] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "CA1" EXACT [] synonym: "CA1 field" EXACT [] @@ -240035,6 +245185,8 @@ id: UBERON:0003882 name: CA2 field of hippocampus def: "Part of hippocampus proper bounded by areas CA3 and CA1, characterized by a narrow layer of large pyramidal cells, similar in size to CA3 pyramidal cells, but which lack the mossy fiber input from the dentate gyrus (adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 460)." [BIRNLEX:1362] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "CA2" EXACT [] synonym: "CA2 field" EXACT [] @@ -240080,6 +245232,8 @@ id: UBERON:0003883 name: CA3 field of hippocampus def: "Part of hippocampus proper bounded by the hilus of the dentate gyrus and area CA2, characterized by large pyramidal cells and a dense projection from dentate gyrus granule cell mossy fibers." [http://neurolex.org/wiki/Category\:CA3] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "CA3" EXACT [] synonym: "CA3" RELATED [Wikipedia:Region_III_of_hippocampus_proper] @@ -240130,6 +245284,8 @@ id: UBERON:0003884 name: CA4 field of hippocampus def: "The last of four regions in the cornu ammonis of the hippocampus and is also part of the hilus of the dentate gyrus. This area contains mostly mossy cells that receive inputs from the dentate gyrus and pyramidal cells in the CA3 region and also projects back to the dentate gyrus." [ncithesaurus:CA4_Field_of_the_Cornu_Ammonis] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "CA4" EXACT [] synonym: "CA4 field" EXACT [] @@ -240160,6 +245316,8 @@ id: UBERON:0003885 name: mesometrium def: "A mesentery that is part of a uterus [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "mesentery of uterus" RELATED [FMA:19816, http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html, MA:0002931] xref: EMAPA:35562 xref: FMA:19816 @@ -240180,6 +245338,8 @@ id: UBERON:0003886 name: future coelemic cavity lumen def: "An anatomical cavity that has the potential to develop into a coelemic cavity lumen." [OBOL:automatic] subset: grouping_class +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "body cavity precursor" RELATED [] synonym: "future coelomic cavity lumen" EXACT [] @@ -240195,6 +245355,8 @@ relationship: part_of UBERON:0000926 ! mesoderm id: UBERON:0003887 name: intraembryonic coelom def: "The part of the coelom in the embryo between the somatopleuric and splanchnopleuric mesoderm; the principal body cavities of the trunk (thoracic, abdominal, and pelvic) arise from this embryonic part of the coelom." [MGI:anna, MP:0012187] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "somatic coelom" EXACT [Wikipedia:Intraembryonic_coelom] xref: EHDAA:251 @@ -240213,6 +245375,8 @@ property_value: homology_notes "(...) I regard it unlikely that coeloms of all b id: UBERON:0003888 name: extraembryonic coelomic cavity def: "The fluid-filled spaces formed within the mass of extraembryonic mesoderm that later fuse to become a large extraembryonic cavity." [ISBN:0-12-402035-6, ISBN:1405118660, MP:0011200] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "chorion cavity" EXACT [EHDAA2:0000246] synonym: "chorionic cavity" EXACT [EHDAA2:0000246, https://sourceforge.net/p/obo/mammalian-phenotype-requests/1454] @@ -240244,11 +245408,13 @@ name: fallopian tube def: "Initial section of the oviduct through which the ova pass from the ovary to the uterus." [http://orcid.org/0000-0002-6601-2165, MGI:smb, MP:0003574] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim -synonym: "fallopian tubes" RELATED [] +synonym: "fallopian tubes" RELATED OMO:0003004 [] synonym: "female paramesonephric duct" RELATED [EHDAA2:0000504] -synonym: "mammalian oviduct" EXACT [https://sourceforge.net/p/geneontology/ontology-requests/8397/] +synonym: "mammalian oviduct" BROAD [https://sourceforge.net/p/geneontology/ontology-requests/8397/] synonym: "paramesonephric duct of female" RELATED [EMAPA:35660] synonym: "salpinges" BROAD OMO:0003004 [] synonym: "salpinx" BROAD [] @@ -240286,6 +245452,8 @@ id: UBERON:0003890 name: Mullerian duct alt_id: UBERON:0005318 def: "Paired ducts of the embryo that run down the lateral sides of the urogenital ridge and terminate at the mullerian eminence in the primitive urogenital sinus. In the female, they will develop to form the fallopian tubes, uterus, and the upper portion of the vagina; in the male, they are lost. These ducts are made of tissue of mesodermal origin[WP]. develops either by lengthwise splitting of the archinephric duct (in chondrichthyans and some amphibians) or by a elongated invagination of the coelomic epithelium (other vertebrates) In males, the oviducts regress. The cranial end of the oviduct maintains an opening into the coelom (which primitively may have been the anteriormost coelomic funnels connecting the nephrocoel with the coelom). This opening is the ostium tubae[USM]." [GO:0061205, http://www.usm.maine.edu/bio/courses/bio205/bio205_26_sex.html, Wikipedia:Paramesonephric_duct] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ductus paramesonephricus" EXACT [] synonym: "early paramesonephric duct" NARROW [EHDAA2:0004048] @@ -240321,6 +245489,8 @@ id: UBERON:0003891 name: stroma def: "Connective, non-functional supportive framework of a biological cell, tissue, or organ. Contrast with parenchyma." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "stromal connective tissue" RELATED [] xref: FMA:81494 xref: NCIT:C67387 @@ -240336,6 +245506,8 @@ name: capsule def: "A cover or envelope partly or wholly surrounding a structure. Examples: egg shell, articular capsules, renal capsules[WP]." [Wikipedia:Capsule_(anatomy)] comment: see also: protective structure surrounding some species of bacteria and fungi. Note that FMA has classes such as Articular capsule that are not subtypes of Capsule (which is undefined in FMA). GO has 'capsule' which is a fungal structure, and 'external encapsulating structure' which is restricted to cells subset: grouping_class +subset: human_subset +subset: mouse_subset subset: non_informative xref: EHDAA:4739 xref: EHDAA:9061 @@ -240351,6 +245523,8 @@ id: UBERON:0003894 name: liver primordium def: "A small endodermal thickening in the foregut adjacent to the transverse septum. Invaginates forming the hepatic diverticulum." [ISBN:3211492755] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "embryological hepatic plate" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -240388,6 +245562,8 @@ property_value: editor_note "consider adding further subdivisions of the endoder id: UBERON:0003895 name: hypaxial myotome region def: "Portion of myotome that is ventral to the horizontal septum." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "body wall muscle" RELATED [XAO:0003228] synonym: "hypaxial myotome region" EXACT [ZFA:0001085] xref: TAO:0001085 @@ -240412,6 +245588,8 @@ consider: WBbt:0005813 id: UBERON:0003897 name: axial muscle def: "One of the skeletal muscles of the head and neck, spine, and ribs." [HP:0003327] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EHDAA:5982 xref: EMAPA:18167 @@ -240430,6 +245608,8 @@ relationship: part_of UBERON:0013701 ! main body axis id: UBERON:0003898 name: skeletal muscle tissue of trunk def: "A portion of skeletal muscle tissue in the trunk." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "skeletal muscle of torso" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of torso" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of trunk" EXACT [OBOL:automatic] @@ -240449,6 +245629,8 @@ relationship: part_of UBERON:0013700 ! axial musculature id: UBERON:0003900 name: epaxial myotome region def: "Portion of myotome that is dorsal to the horizontal septum." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "epaxial myotome regions" EXACT OMO:0003004 [ZFA:0001084] xref: TAO:0001084 xref: ZFA:0001084 @@ -240461,6 +245643,8 @@ id: UBERON:0003901 name: horizontal septum def: "A logitudinal sheet of continuous connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses; each is destined to become, respectively, the epaxial and hyopaxial musculature." [ISBN:0073040584, ZFA:0000671] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "horizontal myoseptum" EXACT [ZFA:0000671] synonym: "horizontal septum of vertebra" RELATED [] xref: EFO:0003555 @@ -240480,6 +245664,8 @@ id: UBERON:0003902 name: retinal neural layer def: "The part of the retina that contains neurons and photoreceptor cells[GO]." [GO:0003407] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "neural layer of retina" EXACT [FMA:58628] @@ -240553,6 +245739,8 @@ relationship: part_of UBERON:0003904 ! bursal plica id: UBERON:0003906 name: cardiac jelly def: "Portion of extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates." [ZFA:0001318] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "heart cardiac jelly" EXACT [VHOG:0000936] @@ -240590,6 +245778,8 @@ property_value: external_definition "The extracellular matrix between the myocar id: UBERON:0003907 name: left atrioventricular canal def: "An atrioventricular canal that is in the left side of a atrioventricular region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left atrio-ventricular canal" EXACT [EHDAA2:0000935] synonym: "left AVC" EXACT [] xref: EHDAA2:0000935 @@ -240606,6 +245796,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0003908 name: right atrioventricular canal def: "An atrioventricular canal that is in the right side of a atrioventricular region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "right atrio-ventricular canal" EXACT [EHDAA2:0001719] synonym: "right AVC" EXACT [] xref: EHDAA2:0001719 @@ -240622,6 +245814,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0003909 name: sinusoid def: "Small blood vessel similar to a capillary but with a fenestrated endothelium. Sinusoids are found in the liver, lymphoid tissue, endocrine organs, and hematopoietic organs such as the bone marrow and the spleen. Sinusoids found within terminal villi of the placenta are not comparable to these; they possess a continuous endothelium and complete basal lamina[WP]." [Wikipedia:Sinusoid_(blood_vessel)] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "endothelium of irregular blood filled space" RELATED [] synonym: "sinusoidal blood vessel" EXACT [] @@ -240644,6 +245838,7 @@ id: UBERON:0003910 name: splenic sinusoid def: "Wide vessels in the spleen that drain into trabecular veins[WP]." [Wikipedia:Red_pulp#Sinusoids] subset: human_reference_atlas +subset: human_subset synonym: "sinusoid of red pulp of spleen" RELATED [FMA:63199] synonym: "sinusoidal blood vessel of spleen" EXACT [OBOL:automatic] xref: FMA:63199 @@ -240668,6 +245863,8 @@ property_value: taxon_notes "Whereas man and the rat are in the 'sinusal' group, id: UBERON:0003911 name: choroid plexus epithelium def: "The epithelial component of the choroid plexus. Consists of cuboidal epithelial cells surrounding a core of capillaries and loose connective tissue." [UBERON:cjm, Wikipedia:Choroid_plexus] +subset: human_subset +subset: mouse_subset synonym: "choroid plexus epithelial tissue" EXACT [OBOL:automatic] synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "epithelial tissue of choroid plexus" EXACT [OBOL:automatic] @@ -240688,6 +245885,8 @@ property_value: structure_notes "The CP epithelial layer is continuous with the id: UBERON:0003912 name: chitinous tooth def: "Tooth-like structure composed of chitin." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003913 ! tooth-like structure intersection_of: UBERON:0003913 ! tooth-like structure intersection_of: composed_primarily_of CHEBI:17029 ! chitin @@ -240699,6 +245898,8 @@ name: tooth-like structure def: "Hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food." [http://orcid.org/0000-0002-6601-2165] comment: see dermal denticle subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "tooth-like organ" EXACT [http://orcid.org/0000-0002-6601-2165] xref: HAO:0001019 is_a: UBERON:0004765 ! skeletal element @@ -240709,6 +245910,8 @@ relationship: in_taxon NCBITaxon:33213 ! Bilateria id: UBERON:0003914 name: epithelial tube def: "Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system." [GO:0060562, PMID:12526790] +subset: human_subset +subset: mouse_subset synonym: "epithelial or endothelial tube" EXACT [] xref: AEO:0000114 xref: EHDAA2:0003114 @@ -240724,6 +245927,8 @@ property_value: curator_notes "contrast with a multi-tissue tube, which has as p id: UBERON:0003915 name: endothelial tube def: "Any endothelium that has the quality of being cylindrical [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001986 ! endothelium is_a: UBERON:0003914 ! epithelial tube intersection_of: UBERON:0001986 ! endothelium @@ -240734,6 +245939,8 @@ relationship: has_quality PATO:0002299 ! tubular id: UBERON:0003916 name: fat pad def: "A mass of closely packed fat cells (adipose tissue) surrounded by fibrous tissue septa[TMD]." [BTO:0000444, GO:0060613, http://medical-dictionary.thefreedictionary.com/fat+pad] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fat body" RELATED [FMA:58616] xref: BTO:0000444 @@ -240769,6 +245976,8 @@ property_value: external_definition "A fatty tissue especially of nearly mature id: UBERON:0003918 name: kidney mesenchyme def: "Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney[GO]." [GO:0072074] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "mesenchyme of kidney" EXACT [] is_a: UBERON:0003104 ! mesenchyme @@ -240788,6 +245997,8 @@ name: venous blood vessel def: "A blood vessel that carries blood from the capillaries toward the heart." [http://www.thefreedictionary.com/venous+blood+vessel] comment: Compare to: vein subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "segment of venous tree organ" EXACT [FMA:86188] synonym: "venous tree organ segment" EXACT [FMA:86188] xref: EMAPA:35932 @@ -240804,6 +246015,8 @@ id: UBERON:0003921 name: pancreas primordium def: "Embryonic structure that develops into pancreatic bud." [Wikipedia:Pancreas#Embryological_development] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "pancreatic anlage" RELATED [ZFA:0000254] synonym: "pancreatic endoderm" RELATED [EFO:0002579] @@ -240835,6 +246048,8 @@ id: UBERON:0003922 name: pancreatic epithelial bud def: "The embryonic pancreas develops from two separate anlagen in the foregut epithelium, one dorsal and two ventral pancreatic buds[PMID]." [PMID:16417468, Wikipedia:Pancreatic_bud] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "pancreas epithelium" RELATED [EMAPA:35645] synonym: "pancreatic anlage" RELATED [] synonym: "pancreatic bud" EXACT [ZFA:0001390] @@ -240863,6 +246078,8 @@ id: UBERON:0003923 name: dorsal pancreatic bud def: "Pancreatic bud that gives rise to the accessory pancreatic duct." [Wikipedia:Pancreatic_bud] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "dorsal pancreas anlage" RELATED [] synonym: "dorsal pancreatic anlage" RELATED [] @@ -240895,6 +246112,8 @@ id: UBERON:0003924 name: ventral pancreatic bud def: "Pancreatic bud that gives rise to the major pancreatic duct." [Wikipedia:Pancreatic_bud] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "anterior pancreatic anlage" RELATED [] synonym: "anterior pancreatic bud" RELATED [] @@ -240924,6 +246143,8 @@ property_value: homology_notes "In chick, Xenopus laevis, and the teleost fish M id: UBERON:0003925 name: photoreceptor inner segment layer def: "Layer of the retina composed of the inner segments of the photoreceptor cells." [ZFIN:curator] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "photoreceptor inner segment layers" RELATED OMO:0003004 [ZFA:0001465] synonym: "retina photoreceptor layer inner segment" EXACT [MA:0002471] @@ -240941,6 +246162,8 @@ property_value: homology_notes "(...) an essentially similar sequence of events [Term] id: UBERON:0003926 name: photoreceptor outer segment layer +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "photoreceptor outer segment layers" RELATED OMO:0003004 [ZFA:0001466] synonym: "retina photoreceptor layer outer segment" EXACT [MA:0002472] @@ -240966,6 +246189,8 @@ consider: ZFA:0000116 id: UBERON:0003928 name: digestive system duct def: "A duct that is part of a digestive system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "duct of digestive system" EXACT [OBOL:automatic] synonym: "duct of gastrointestinal system" EXACT [OBOL:automatic] synonym: "gastrointestinal system duct" EXACT [OBOL:automatic] @@ -240980,6 +246205,8 @@ relationship: part_of UBERON:0001007 ! digestive system id: UBERON:0003929 name: digestive tract epithelium def: "An epithelium that lines the lumen of the digestive tract." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "alimentary tract epithelium" RELATED [OBOL:automatic] synonym: "digestive tract epithelial tissue" EXACT [OBOL:automatic] synonym: "epithelial tissue of digestive tract" EXACT [OBOL:automatic] @@ -241010,6 +246237,8 @@ property_value: taxon_notes "" xsd:string id: UBERON:0003930 name: atrioventricular canal endocardium def: "Endocardium that is part of the atrioventricular canal[ZFA,vetted]." [ZFA:0001616] +subset: human_subset +subset: mouse_subset synonym: "AV canal endocardium" EXACT [OBOL:automatic] synonym: "AVC endocardium" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "endocardium of atrioventricular canal" EXACT [OBOL:automatic] @@ -241027,6 +246256,8 @@ id: UBERON:0003931 name: diencephalic white matter alt_id: UBERON:0023148 def: "White matter that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "diencephalic tract/commissure" EXACT [ZFA:0000338] synonym: "diencephalic tracts and commissures" EXACT OMO:0003004 [TAO:0000338] @@ -241046,6 +246277,8 @@ id: UBERON:0003932 name: cartilage element of chondrocranium def: "A cartilage element of chondrocranium. Example: neurocranial trabecula." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "cartilage of chondrocranium" EXACT [OBOL:accepted] synonym: "cartilaginous element of chondrocranium" EXACT [OBOL:accepted] synonym: "chondrocranium cartilage" EXACT [ZFA:0001461] @@ -241062,6 +246295,8 @@ relationship: part_of UBERON:0002241 ! chondrocranium id: UBERON:0003933 name: cranial cartilage def: "A cartilage element that is part of the cranial skeleton." [https://orcid.org/0000-0002-6601-2165, ZFA:0001458] +subset: human_subset +subset: mouse_subset synonym: "cartilage of cranium" EXACT [OBOL:automatic] synonym: "cranial cartilages" RELATED OMO:0003004 [ZFA:0001458] synonym: "cranium cartilage" EXACT [OBOL:automatic] @@ -241108,6 +246343,8 @@ relationship: part_of UBERON:0000152 ! pelvic fin id: UBERON:0003936 name: postoptic commissure subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "POC" EXACT [ZFA:0000059] synonym: "post optic commissure" EXACT [ZFA:0000059] synonym: "post-optic commissure" EXACT [ZFA:0000059] @@ -241122,6 +246359,8 @@ relationship: part_of UBERON:0003931 ! diencephalic white matter id: UBERON:0003937 name: reproductive gland def: "Any of the organized aggregations of cells that function as secretory or excretory organs and are associated with reproduction." [MP:0000653] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "genitalia gland" EXACT [OBOL:automatic] @@ -241142,6 +246381,8 @@ relationship: part_of UBERON:0000990 ! reproductive system id: UBERON:0003938 name: sensory dissociation area def: "The area of the parietal lobe that integrates tactile and visual stimuli." [MP:0000796] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure @@ -241154,6 +246395,8 @@ name: transverse gyrus of Heschl alt_id: UBERON:0022860 def: "The area of the temporal lobe concerned with hearing[MP]. The transverse temporal gyri (also called Heschl's gyri or Heschl's convolutions) are found in the area of primary auditory cortex in the superior temporal gyrus of the human brain, occupying Brodmann areas 41 and 42. It is the first cortical structure to process incoming auditory information. Anatomically, the transverse temporal gyri are distinct in that they run mediolaterally (towards the center of the brain) rather than dorsiventrally (front to back) as all other temporal lobe gyri run. The Heschl's gyri are named after Richard L. Heschl." [MP:0000803, Wikipedia:Transverse_temporal_gyrus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "gyri temporales transversi" RELATED OMO:0003011 [Wikipedia:Transverse_temporal_gyrus] synonym: "Heshl's gyrus" EXACT [https://github.com/obophenotype/uberon/issues/609] @@ -241176,6 +246419,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Gr id: UBERON:0003941 name: cerebellum anterior vermis def: "The anterior portion of the narrow middle zone between the two hemispheres of the cerebellum that is located anterior to the primary fissure." [MP:0000867] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior cerebellum vermis" EXACT [MA:0002969] synonym: "anterior lobe vermis" RELATED [FMA:72255] @@ -241202,6 +246447,8 @@ id: UBERON:0003942 name: somatosensory system alt_id: UBERON:0014511 def: "The sensory system for the sense of touch and pain." [NLXANAT:090818] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "somatic sensory system" EXACT [] synonym: "system for detection of somatic senses" EXACT [] @@ -241221,6 +246468,8 @@ name: fourth lumbar dorsal root ganglion def: "The group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fourth lumbar vertebra." [MP:0001019] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "forth lumbar dorsal root ganglion" EXACT [BIRNLEX:2626] synonym: "fourth lumbar dorsal root ganglion" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -241238,6 +246487,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003945 name: somatic motor system def: "The neural tissue involved in the transmission of motor signals." [MP:0001051] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37953 {source="MA:th"} is_a: UBERON:0010000 ! multicellular anatomical structure @@ -241247,6 +246498,7 @@ relationship: part_of UBERON:0000012 ! somatic nervous system id: UBERON:0003946 name: placenta labyrinth def: "The placental layers where embryonic blood vessels are surrounded by trophoblast cells and maternal blood." [MP:0001716] +subset: mouse_subset subset: pheno_slim synonym: "labyrinthine layer" EXACT [GO:0060713] synonym: "labyrinthine layer of placenta" EXACT [GO:0060713] @@ -241263,6 +246515,8 @@ property_value: taxon_notes "Mouse-human differences: The mouse and human placen id: UBERON:0003947 name: brain ventricle/choroid plexus def: "The brain ventricles or their associated choroid plexuses." [MP:0002200] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure @@ -241277,6 +246531,8 @@ property_value: editor_note "TODO merge into BV" xsd:string id: UBERON:0003948 name: blood-air barrier def: "The membrane between the capillary blood and alveolar air, comprised of the alveolar epithelium and the capillary epithelium and their adherent basement membranes and epithelial cell cytoplasm." [MP:0002324] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: MESH:D015824 is_a: UBERON:0000119 ! cell layer @@ -241289,6 +246545,8 @@ property_value: editor_note "TODO - alveolar lumen" xsd:string id: UBERON:0003949 name: tubal tonsil def: "The lymph tissue associated with the pharyngeal opening of the auditory tube." [MP:0002386] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "auditory tube lymph gland" EXACT [FMA:54975] synonym: "eustachian amygdala" EXACT [FMA:54975] @@ -241304,6 +246562,8 @@ relationship: contributes_to_morphology_of UBERON:0001735 ! tonsillar ring id: UBERON:0003950 name: inner ear canal def: "The tubular ducts of the inner ear." [MP:0002729] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37882 {source="MA:th"} is_a: UBERON:0000464 ! anatomical space @@ -241314,6 +246574,8 @@ relationship: part_of UBERON:0001846 ! internal ear id: UBERON:0003951 name: ocular fundus def: "The posterior concave interior of the eye, consisting of the retina, the choroid, the posterior segment of the sclera, the optic disk, and blood vessels, visible by an ophthalmoscope." [MP:0002864, Wikipedia:Fundus_(eye)] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "eye fundus" EXACT [] synonym: "fundus" EXACT [HP:0001098] @@ -241339,6 +246601,8 @@ id: UBERON:0003952 name: anterior stroma of cornea def: "The anterior segment of the lamellated connective tissue layer of the cornea." [MP:0003093] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior stroma" BROAD [MP:0003093] synonym: "cornea anterior stroma" EXACT [MP:0003093] @@ -241357,6 +246621,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003953 name: posterior stroma of cornea def: "The posterior segment of the lamellated connective tissue layer of the cornea." [MP:0003094] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cornea posterior stroma" EXACT [MP:0003094] synonym: "posterior stroma" BROAD [MP:0003094] @@ -241373,6 +246639,8 @@ relationship: part_of UBERON:0001777 ! substantia propria of cornea id: UBERON:0003954 name: squamoparietal suture def: "The articulation of the squamous portion of the temporal bones with the parietal bones[MP]. The squamosal suture arches backward from the pterion and connects the temporal squama with the lower border of the parietal: this suture is continuous behind with the short, nearly horizontal parietomastoid suture, which unites the mastoid process of the temporal with the region of the mastoid angle of the parietal[WP]." [MP:0003844, Wikipedia:Squamosal_suture] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "squamo-parietal suture" EXACT [MP:0003844] synonym: "squamoparietal suture of skull" EXACT [] @@ -241398,6 +246666,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/a/a8/G id: UBERON:0003955 name: molar crown def: "The part of a molar that is covered by enamel." [MP:0003932] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "crown of molar tooth" EXACT [FMA:85301] synonym: "molar tooth crown" EXACT [FMA:85301] @@ -241415,6 +246685,8 @@ relationship: part_of UBERON:0003655 ! molar tooth id: UBERON:0003956 name: aqueous drainage system def: "The structures associated with drainage of the aqueous humor from the eye, that include the trabecular meshwork, Schlemm's canal, the uveoscleral network, and the aqueous veins." [MP:0005198] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37427 {source="MA:th"} is_a: UBERON:0000467 ! anatomical system @@ -241425,6 +246697,8 @@ relationship: part_of UBERON:0001768 ! uvea id: UBERON:0003957 name: Bruch's membrane def: "A transparent, nearly structureless innermost layer of the choroid in contact with the pigmented layer of the retina." [https://github.com/obophenotype/uberon/issues/14, MP:0005239] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "basal lamina of choroid" RELATED [FMA:58438] @@ -241458,6 +246732,8 @@ property_value: structure_notes "Bruch's membrane consists of five layers (from id: UBERON:0003958 name: long bone epiphyseal ossification zone def: "The layer of the epiphyseal plate where new bone matrix is deposited." [MP:0006399] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37896 {source="MA:th"} is_a: UBERON:0005055 ! zone of long bone @@ -241468,6 +246744,8 @@ relationship: part_of UBERON:0002516 ! epiphyseal plate id: UBERON:0003959 name: rete testis def: "An anastomosing network of delicate tubules located in the hilum of the testicle (mediastinum testis) that carries sperm from the seminiferous tubules to the vasa efferentia[WP]." [MP:0006416, Wikipedia:Rete_testis] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "Haller's rete" EXACT [FMA:19834] xref: EMAPA:18332 @@ -241495,6 +246773,8 @@ id: UBERON:0003960 name: styloid process of temporal bone def: "Slender needle-like pointed projection that runs downward and slightly forward from the base of the inferior surface of the petrous portion of the temporal bone where it joins the tympanic portion; it gives attachment to the styloglossus, stylohyoid, and stylopharyngeus muscles and the stylohyoid and stylomandibular ligaments." [MP:0008023, Wikipedia:Temporal_styloid_process] comment: Disease notes: Eagle's syndrome +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "processus styloideus" EXACT OMO:0003011 [FMA:52877, FMA:TA] synonym: "processus styloideus ossis temporalis" EXACT [Wikipedia:Temporal_styloid_process] @@ -241519,6 +246799,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/96/Gr id: UBERON:0003961 name: cingulum of brain def: "The white matter fiber bundle that projects from the cingulate gyrus to the entorhinal cortex in the brain." [MP:0008232] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cingulum" BROAD [] synonym: "cingulum bundle" EXACT [BAMS:cg] @@ -241543,6 +246825,8 @@ id: UBERON:0003962 name: pterygopalatine ganglion def: "The small parasympathetic ganglion that supplies nerve fibers to the lacrimal, nasal, palatine and pharyngeal glands." [MP:0008314, Wikipedia:Pterygopalatine_ganglion] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "g. pterygopalatinum" RELATED OMO:0003011 [Wikipedia:Pterygopalatine_ganglion] synonym: "Meckel ganglion" EXACT [MP:0008314] @@ -241569,6 +246853,8 @@ id: UBERON:0003963 name: otic ganglion def: "The ganglion that supplies nerve fibers to the parotid gland." [MP:0008315, Wikipedia:Otic_ganglion] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "Arnold's ganglion" EXACT [FMA:6967] synonym: "ganglion oticum" RELATED OMO:0003011 [Wikipedia:Otic_ganglion] @@ -241591,6 +246877,8 @@ id: UBERON:0003964 name: prevertebral ganglion def: "The sympathetic ganglia located in front of the vertebral column and are associated with the major branches of the abdominal aorta; these include the celiac, aorticorenal, superior and inferior mesenteric ganglia." [ISBN:0-683-40008-8, MP:0008316] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "collateral ganglia" RELATED OMO:0003004 [Wikipedia:Prevertebral_ganglia] synonym: "collateral ganglion" EXACT [FMA:5892] @@ -241611,6 +246899,8 @@ relationship: ventral_to UBERON:0001130 ! vertebral column id: UBERON:0003965 name: sympathetic afferent fiber def: "The fibers that conduct sensory nerve impulses from the viscera through the posterior dorsal roots into the spinal cord." [MP:0008319] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: Wikipedia:General_visceral_afferent_fibers is_a: UBERON:0006134 ! nerve fiber @@ -241621,6 +246911,8 @@ relationship: part_of UBERON:0000013 ! sympathetic nervous system id: UBERON:0003966 name: gonial bone def: "Investing bone that lies on the surface of the malleus." [MP:0008380] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "gonium" EXACT [MP:0008380] xref: EMAPA:37874 {source="MA:th"} @@ -241635,6 +246927,8 @@ property_value: editor_note "To be revisted after a review of auditory ossicles" id: UBERON:0003967 name: cutaneous elastic tissue def: "The slender connective tissue fiber in the extracellular matrix of skin tissue that is composed of microfibrils and amorphous elastin and is characterized by great elasticity." [MP:0008418] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cutaneous elastic fiber" NARROW [MP:0008418] synonym: "dermal elastic fiber" NARROW [MP:0008418] @@ -241650,6 +246944,8 @@ relationship: part_of UBERON:0000014 ! zone of skin id: UBERON:0003968 name: peripheral lymph node def: "The lymph nodes located outside the thoracic and abdominal cavities, such as the submandibular, prescapular, axillary, inguinal and popliteal lymph nodes." [https://github.com/obophenotype/uberon/issues/4, MP:0008463] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37938 {source="MA:th"} is_a: UBERON:0000029 ! lymph node @@ -241660,6 +246956,7 @@ property_value: dc:contributor https://github.com/tmeehan id: UBERON:0003970 name: placental labyrinth vasculature def: "Blood vessels of the layer of the placenta where embryonic and maternal blood vessels interdigitate." [MP:0008803] +subset: mouse_subset subset: pheno_slim synonym: "placental labyrinth vascular network" EXACT [] synonym: "placental vasculature" RELATED [OBOL:automatic] @@ -241673,6 +246970,8 @@ relationship: part_of UBERON:0003946 ! placenta labyrinth id: UBERON:0003971 name: interfrontal bone def: "A bone between the frontal bones in the skull; an extra bony plate within the anterior fontanelle that is not usually present." [MP:0008818] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0003462 ! facial bone relationship: part_of UBERON:0011156 ! facial skeleton @@ -241681,6 +246980,8 @@ relationship: part_of UBERON:0011156 ! facial skeleton id: UBERON:0003972 name: placenta junctional zone def: "Fetally derived placental region that separates the maternal uterine tissue from the placenta labyrinth." [MP:0008957] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure @@ -241690,6 +246991,8 @@ relationship: part_of UBERON:0001987 ! placenta id: UBERON:0003973 name: nasal concha of ethmoid bone def: "One of the conchae of the ethmoid bone, which occupy the caudal part of the nasal fossae and form the lateral and superior portions of the turbinate bones in mammals[MP]. The ethmoturbinals are associated with the cribiform plate. They are covered with olfactory epithelium. Primarily, they serve to increase the surface area over which olfactory receptor neurons can come in contact with respiratory air. These olfactory receptor nerves then synapse with the mitral cells of the olfactory lobes through the cribiform plate in the manner described above[Palaeos]." [http://palaeos.com/vertebrates/bones/braincase/ethmoid.html, MP:0008971] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ethmo-turbinate" EXACT [] synonym: "ethmoturbinal" EXACT [http://palaeos.com/vertebrates/bones/braincase/ethmoid.html] @@ -241712,6 +247015,8 @@ id: UBERON:0003974 name: upper part of vagina alt_id: UBERON:0015242 def: "The upper third of the vagina." [MP:0009077] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cranial vagina" EXACT [MP:0009077] synonym: "pelvic part of vagina" EXACT [FMA:27974] @@ -241736,6 +247041,8 @@ name: internal female genitalia def: "The internal feminine genital organs, including the ovaries, uterine tubes, uterus, uterine cervix, and vagina." [MP:0009209] comment: TODO: Relabel. Make distinct organ class. See https://github.com/obophenotype/uberon/issues/547 subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "female internal genitalia" EXACT [FMA:45654] @@ -241756,6 +247063,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003976 name: saccule duct def: "The saccular portion of the utriculosaccular duct that normally extends from the sacculus to the endolymphatic duct." [MP:0009259] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "saccular duct" EXACT [MP:0009259] synonym: "saccular part of utriculosaccular duct" EXACT [] @@ -241772,6 +247081,8 @@ relationship: part_of UBERON:0011774 ! utriculosaccular duct id: UBERON:0003977 name: utricle duct def: "The utricular portion of the utriculosaccular duct that normally extends from the utriculus to the endolymphatic duct." [MP:0009260] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "utricular duct" EXACT [MP:0009260] synonym: "utricular part of utriculosaccular duct" EXACT [] @@ -241788,6 +247099,8 @@ relationship: part_of UBERON:0011774 ! utriculosaccular duct id: UBERON:0003978 name: valve subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "anatomical valve" EXACT [FMA:67611] xref: EHDAA2:0004046 xref: EHDAA:1892 @@ -241804,6 +247117,8 @@ property_value: has_relational_adjective "valvular" xsd:string id: UBERON:0003979 name: utricle valve def: "The utriculo-endolymphatic (UE) valve which is located in the antero-inferior wall of the utricle at the orifice of the utricular duct and serves to regulate endolymph volume in the endolymphatic sac, the utricle and the canals." [MP:0009261] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0003978 ! valve is_a: UBERON:0004121 ! ectoderm-derived structure @@ -241814,6 +247129,8 @@ relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth id: UBERON:0003980 name: cerebellum fissure def: "One of a set of deep furrows which divide the lobules of the cerebellum. Examples: postcentral, primary and secondary furrows." [MP:0009267] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebellar fissure" EXACT [] synonym: "cerebellar fissures" RELATED OMO:0003004 [BAMS:CBf] @@ -241841,6 +247158,8 @@ id: UBERON:0003981 name: primordial ovarian follicle def: "Primordial follicles are indiscernible to the naked eye and develop to primary, secondary, and finally mature vesicular follicles." [MP:0009361] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ovary primordial follicle" EXACT [MA:0001710] synonym: "primordial follicle" EXACT [] @@ -241857,6 +247176,8 @@ name: mature ovarian follicle def: "Missing definition for term UBERON:0003982. Please replace it using linked reference." [MP:0009364] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "antral follicle" RELATED [BTO:0000389] @@ -241879,6 +247200,8 @@ property_value: external_definition "Stage IV (690-730 microns) are oocyte matur id: UBERON:0003983 name: conus arteriosus def: "A conical pouch formed from the upper and left angle of the right ventricle in the chordate heart, from which the pulmonary artery arises[WP]. the anteriosuperior, smooth-walled portion of the cavity of the right ventricle, beginning at the supraventricular crest and terminates in the pulmonary trunk[MP]." [MP:0009464, Wikipedia:Conus_arteriosus] +subset: human_subset +subset: mouse_subset xref: AAO:0010250 xref: Wikipedia:Conus_arteriosus is_a: UBERON:0004151 ! cardiac chamber @@ -241893,6 +247216,8 @@ id: UBERON:0003984 name: uterine tube infundibulum def: "The funnel-like expansion of the abdominal extremity of the uterine tube[MP]." [MP:0009466, Wikipedia:Infundibulum_of_uterine_tube] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "infundibulum" BROAD INCONSISTENT [] synonym: "infundibulum of fallopian tube" NARROW [FMA:18307] @@ -241916,6 +247241,8 @@ property_value: taxon_notes "In mammals, the uterine tube infundibulum is part o id: UBERON:0003985 name: major sublingual duct def: "The duct that drains the anterior portion of the sublingual gland and opens at the sublingual papilla." [MP:0009528] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "Bartholin's duct" RELATED INCONSISTENT [FMA:59986] xref: BTO:0004558 @@ -241930,6 +247257,8 @@ disjoint_from: UBERON:0010150 ! duct of major vestibular gland id: UBERON:0003986 name: minor sublingual duct def: "Any of the 8-20 small ducts that open into the mouth on the surface of the sublingual fold." [MP:0009529] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "duct of Rivinus" EXACT [Wikipedia:Sublingual_duct] xref: EMAPA:37909 {source="MA:th"} @@ -241942,6 +247271,8 @@ id: UBERON:0003987 name: Hassall's corpuscle def: "The small spherical bodies of epithelial cells found in the medulla of the thymus, that are arranged in a concentric pattern around clusters of degenerating lymphocytes, eosinophils and macrophages." [MP:0009539] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "capsule of Hassal's corpuscle" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "thymic corpuscle" EXACT [] @@ -241965,6 +247296,8 @@ id: UBERON:0003988 name: thymus corticomedullary boundary def: "The dense region demarcating the thymus medulla from the surrounding cortex that is characterized by numerous blood vessels (predominantly arterioles) with some perivascular connective tissue, mature and immature T lymphocytes, dendritic cells, variable numbers of perivascular B-lymphocytes and plasma cells; site of entry of bone marrow stem cells and exit of mature, functional T cells." [MP:0009543] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "thymic cortico-medullary boundary" EXACT [MP:0009543] synonym: "thymic corticomedullary boundary" EXACT [MP:0009543] @@ -241994,6 +247327,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0003989 name: medulla oblongata anterior median fissure def: "The longitudinal groove in the midline of the anterior aspect of the medulla oblongata." [MP:0009680] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior median fissure" EXACT [FMA:83734] synonym: "anterior median fissure of medulla" EXACT [FMA:83734] @@ -242013,6 +247348,8 @@ relationship: part_of UBERON:0001896 ! medulla oblongata id: UBERON:0003990 name: spinal cord motor column def: "The subclasses of motor neurons which are organized into longitudinally oriented columns that occupy distinct and, in some cases, discontinuous domains along the rostrocaudal axis of the spinal cord; motor neurons within a single column send their axons to a common peripheral target." [MP:0009685] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0016550 ! spinal cord column relationship: composed_primarily_of CL:0000100 ! motor neuron @@ -242022,6 +247359,8 @@ relationship: contributes_to_morphology_of UBERON:0002240 ! spinal cord id: UBERON:0003991 name: fourth ventricle median aperture def: "The large midline opening of the posterior inferior part of the roof of the fourth ventricle that connects the fourth ventricle to the posterior cerebromedullary cistern and the spinal cord." [MP:0009802, Wikipedia:Median_aperture] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "apertura mediana" EXACT OMO:0003011 [FMA:75015, FMA:TA] synonym: "apertura mediana ventriculi quarti" RELATED OMO:0003011 [Wikipedia:Median_aperture] @@ -242048,6 +247387,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b9/Gr id: UBERON:0003992 name: fourth ventricle lateral aperture def: "One of the two lateral openings of the fourth ventricle into the subarachnoid space at the cerebellopontine angle[MP]." [MP:0009803, Wikipedia:Lateral_aperture] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "apertura lateralis" EXACT OMO:0003011 [FMA:78473, FMA:TA] synonym: "apertura lateralis ventriculi quarti" RELATED OMO:0003011 [Wikipedia:Lateral_aperture] @@ -242075,6 +247416,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/54/L id: UBERON:0003993 name: interventricular foramen of CNS def: "The paired channels that connect the lateral and third ventricles and allows cerebrospinal fluid produced in the lateral ventricles to flow into the third ventricles." [MP:0009804, Wikipedia:Interventricular_foramina_(neural_anatomy)] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "foramen interventriculare" EXACT OMO:0003011 [Wikipedia:Interventricular_foramina_(neural_anatomy)] synonym: "foramen Monroi" EXACT [Wikipedia:Interventricular_foramina_(neural_anatomy)] @@ -242104,6 +247447,8 @@ property_value: external_ontology_notes "it is not clear if the FMA class refers id: UBERON:0003994 name: pelvic ligament def: "The dorsal sacroiliac, the sacrotuberal and/or the iliolumbar ligaments associated with the bony ring formed by the pair of hip bones fused at the symphysis and their firm articulation with the sacrum." [MP:0009807] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "pelvis ligament" EXACT [MA:0002948] xref: MA:0002948 @@ -242116,6 +247461,8 @@ id: UBERON:0003995 name: subarcuate fossa def: "The irregular depression found on the posterior inner surface of the petrous portion of the temporal bone just below its crest and above and lateral to the internal acoustic meatus[MP]." [MP:0009822] comment: In the temporal bone, above and between the aquæductus vestibuli is an irregular depression which lodges a process of the dura mater and transmits a small vein and the subarcuate artery[1] a branch of the internal auditory artery, which is an end artery that supplies blood to the inner ear ; in the infant this depression is represented by a large fossa, the subarcuate fossa, which extends backward as a blind tunnel under the superior semicircular canal. It is extensive in most primates (except for great apes) and nearly all mammals. In these animals, the subarcuate fossa houses a part of the cerebellum, the petrosal lobe[WP] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fossa subarcuata" EXACT OMO:0003011 [FMA:56418, FMA:TA] xref: EMAPA:37967 {source="MA:th"} @@ -242130,6 +247477,8 @@ id: UBERON:0003996 name: cervical vertebra 1 arcus anterior alt_id: UBERON:0005209 def: "The arch that connects the lateral masses of the atlas anteriorly and articulates with the anterior articular facet of the dens of the axis[MP]." [MP:0009879] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior arch of atlas" EXACT [MA:0002954] synonym: "arcus anterior" EXACT [MP:0009879] @@ -242150,6 +247499,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9a/Ar id: UBERON:0003997 name: hyoid bone greater horn def: "The larger and more lateral of the paired processes on either side of the hyoid bone[MP]." [MP:0009913, Wikipedia:Greater_cornu] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cornu majus" EXACT [FMA:59496] synonym: "cornu majus ossis hyoidei" EXACT OMO:0003011 [FMA:59496, FMA:TA] @@ -242189,6 +247540,8 @@ property_value: taxon_notes "In humans, the greater cornua are the larger, more id: UBERON:0003998 name: hyoid bone lesser horn def: "Shorter and more medial of the paired processes on either side of the hyoid bone[MP]." [MP:0009914, Wikipedia:Lesser_cornu] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior horn of hyoid" RELATED [ISBN:0073040584] synonym: "ceratohyal" RELATED SENSU [ISBN:0073040584] @@ -242221,6 +247574,8 @@ property_value: external_definition "The lesser cornua (or lesser horns) are two id: UBERON:0003999 name: hyoid bone body def: "The main curve of the hyoid bone, from which the horns extend." [MP:0009917, Wikipedia:Body_of_hyoid_bone] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "base of hyoid bone" RELATED [MA:0002958] synonym: "basihyal bone" RELATED [MA:0002958] @@ -242242,6 +247597,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1f/Gr id: UBERON:0004000 name: tarsal gland acinus def: "A sac-like structure comprising a sebaceous gland." [MP:0009935] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "acinus of tarsal gland" EXACT [] synonym: "Meibomian gland acinus" EXACT [] @@ -242258,6 +247615,8 @@ relationship: part_of UBERON:0001818 ! tarsal gland id: UBERON:0004001 name: olfactory bulb layer def: "Missing definition for term UBERON:0004001. Please replace it using linked reference." [MP:0009946] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cytoarchitectural part of olfactory bulb" EXACT [NLXANAT:20090402] xref: EMAPA:37917 {source="MA:th"} @@ -242274,6 +247633,8 @@ property_value: editor_note "TODO - check isa parentage" xsd:string id: UBERON:0004002 name: posterior lobe of cerebellum def: "The region of the cerebellum that is posterior to the primary fissure and anterior to the posteriolateral fissure." [MP:0009962] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebellar posterior lobe" EXACT [] synonym: "cerebellum posterior lobe" EXACT [] @@ -242299,6 +247660,8 @@ relationship: contributes_to_morphology_of UBERON:0002129 ! cerebellar cortex id: UBERON:0004003 name: cerebellum hemisphere lobule def: "The region of a cerebellar lobule that resides in either of the lateral sections of the cerebellum outside the vermis; in mammals, the vermis portion of the cerebellum has a foliation pattern along the AP axis that is distinct from the lateral cerebellar hemispheres." [MP:0009963] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebellar hemisphere lobule" EXACT [] synonym: "lobule of cerebellar hemisphere" EXACT [FMA:83880] @@ -242317,6 +247680,8 @@ property_value: editor_note "TODO - define as a region overlapping the lobule" x id: UBERON:0004004 name: cerebellum lobule def: "One of the the ten gyri of the cerebellar cortex." [MP:0009964] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lobular parts of the cerebellar cortex" EXACT [BIRNLEX:1084] xref: BIRNLEX:1084 @@ -242330,6 +247695,8 @@ id: UBERON:0004006 name: cerebellum intermediate zone alt_id: UBERON:0014342 def: "The paired regions of the cerebellar hemisphere that lie adjacent to the vermis and are between the vermis and lateral regions of the hemispheres; it receives input from the corticopontocerebellar fibers that originate from the motor cortex, and also receives sensory feedback from the muscles; these signals are integrated by this region, to coordinate muscle activity with motor inputs." [MP:0009966] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebellar paravermis" EXACT [MP:0009966, NLXANAT:20081236] synonym: "cerebellum intermediate hemisphere" EXACT [MP:0009966] @@ -242355,6 +247722,8 @@ relationship: part_of UBERON:0014643 ! spinocerebellum id: UBERON:0004008 name: cerebellar plate def: "The embryonic pseudostratified epithelium of the fourth cerebellar ventricle that eventually forms the vermis and ventral neuroepithelium." [MP:0000856] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebellum plate" EXACT [] synonym: "cerebellum roof plate" RELATED [EHDAA2:0004401] @@ -242372,6 +247741,8 @@ relationship: part_of UBERON:0002037 {source="EHDAA2"} ! cerebellum id: UBERON:0004009 name: cerebellum posterior vermis def: "The posterior portion of the narrow middle zone between the two hemispheres of the cerebellum that is located posterior to the primary fissure." [MP:0000869] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "posterior cerebellum vermis" EXACT [] synonym: "posterior lobe vermis" RELATED [FMA:72259] @@ -242395,6 +247766,8 @@ relationship: part_of UBERON:0004002 ! posterior lobe of cerebellum id: UBERON:0004010 name: primary muscle spindle def: "The sensory organ in muscle; involved in the stretch reflex and sensitive to stretch velocity." [MP:0000991] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0003718 ! muscle spindle @@ -242402,6 +247775,8 @@ is_a: UBERON:0003718 ! muscle spindle id: UBERON:0004011 name: secondary muscle spindle def: "The sensory organ in muscle; involved in the stretch reflex and not sensitive to stretch velocity." [MP:0000994] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0003718 ! muscle spindle @@ -242409,6 +247784,8 @@ is_a: UBERON:0003718 ! muscle spindle id: UBERON:0004012 name: golgi tendon organ def: "The sensory organ in muscle that is involved in regulating muscle tension." [MP:0000999] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "neurotendinous ending" EXACT [FMA:83608] synonym: "neurotendinous organ of golgi" EXACT [FMA:83608] @@ -242424,6 +247801,8 @@ relationship: part_of UBERON:0001630 ! muscle organ id: UBERON:0004013 name: egg cylinder def: "The transient cup-like structure of the epiblast that consists of a single layer of embryonic cells." [MP:0003085] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:36119 is_a: UBERON:0000119 ! cell layer @@ -242434,6 +247813,8 @@ relationship: part_of UBERON:0002532 ! epiblast (generic) id: UBERON:0004014 name: labium minora def: "One of the folds of skin which form the inner lips on both sides of the vaginal opening." [MP:0003520] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "labia minorum" EXACT [] synonym: "labium minora" EXACT [] @@ -242457,6 +247838,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b7/Vu id: UBERON:0004015 name: embryonic-extraembryonic boundary def: "The connection between the embryo proper and extraembryonic tissues." [MP:0003890] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0000015 ! non-material anatomical boundary intersection_of: UBERON:0000015 ! non-material anatomical boundary @@ -242469,6 +247852,8 @@ relationship: adjacent_to UBERON:0002050 ! embryonic structure id: UBERON:0004016 name: dermatome def: "A transitional population of migrating mesenchymal cells that derive from somites and that will become dermal cells." [AEO:0001017, AEO:JB] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cutis plate" EXACT [Wikipedia:Cutis_plate] synonym: "dermatomal mesenchyme" EXACT [Wikipedia:Cutis_plate] @@ -242499,6 +247884,8 @@ property_value: terminology_notes "Not to be confused with 'dermatome segment of id: UBERON:0004017 name: periocular mesenchyme def: "The mesenchymal cells that give rise to the corneal endothelium, corneal stroma, sclera, iris stroma, ciliary muscle, ciliary stroma, and trabecular meshwork of the eye[MP]." [MP:0004054, PMID:3709965] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "periocular mesenchyme" RELATED [XAO:0004089] xref: XAO:0004089 @@ -242516,6 +247903,8 @@ id: UBERON:0004019 name: baroreceptor def: "The sensory nerve endings in the wall of the atria of the heart, vena cava, aortic arch and carotid sinus that are sensitive to changes in blood pressure." [MP:0004118] comment: WP classifies as mechanoreceptor +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "baroceptor" RELATED [Wikipedia:Baroreceptor] synonym: "pressoreceptor" RELATED [Wikipedia:Baroreceptor] @@ -242544,6 +247933,7 @@ is_obsolete: true id: UBERON:0004021 name: spongiotrophoblast layer def: "The structure of the outer structural layer of the rodent placenta[MP]." [MP:0004255, PMID:19829370] +subset: mouse_subset subset: pheno_slim synonym: "spongiotrophoblast" BROAD [] synonym: "spongiotrophoblast layer of placenta" EXACT [] @@ -242565,6 +247955,8 @@ property_value: taxon_notes "restriction to Rodentia may be too strong - we appl id: UBERON:0004022 name: germinal neuroepithelium def: "The single layer of epithelial cells that lines the early neural tube and develops into the nervous system and into the neural crest cells." [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0004261] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "germinal neuroepithelial layer" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "germinal neuroepithelium" EXACT [NCBIBook:NBK10047] @@ -242582,6 +247974,8 @@ property_value: development_notes "As the cells adjacent to the lumen continue t id: UBERON:0004023 name: ganglionic eminence def: "The transient proliferative population of neurons that expands exponentially during late prenatal development; it is a continuous germinal zone distinct from the ventricular zone that surrounds the brain ventricles[MP]." [MP:0004274] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "embryonic GE" BROAD OMO:0003000 [] synonym: "embryonic subventricular zone" EXACT [MP:0004274] @@ -242605,6 +247999,8 @@ property_value: development_notes "contributes significantly in building up the id: UBERON:0004024 name: medial ganglionic eminence def: "A distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the neocortex; however, hippocampal neurons, thalamus, septum and olfactory bulb neurons are also partly derived from the MGE." [MP:0004276] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "MGE" BROAD OMO:0003000 [PMID:23375746] xref: DHBA:10550 @@ -242619,6 +248015,8 @@ relationship: part_of UBERON:0004023 ! ganglionic eminence id: UBERON:0004025 name: lateral ganglionic eminence def: "A distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the striatum; however, neocortex, thalamus, septum and olfactory bulb neurons are also partly derived from the LGE." [MP:0004277] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "LGE" BROAD OMO:0003000 [PMID:23375746] xref: DHBA:10551 @@ -242633,6 +248031,8 @@ id: UBERON:0004026 name: caudal ganglionic eminence def: "The caudally located, distinct elevation of a transient proliferating cell mass of the fetal subventricular zone, located adjacent to the lateral ventricle." [MP:0004278] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "CGE" BROAD [] xref: DHBA:10552 @@ -242648,6 +248048,8 @@ id: UBERON:0004027 name: chorionic plate def: "That portion of the chorionic wall in the region of its uterine attachment, which gives rise to chorionic villi; it consists of the mesoderm that lines the chorionic vesicle and, on the maternal side, of the trophoblast that lines the intervillous spaces; in the last half of gestation, the mesodermal connective tissue is largely replaced by fibrinoid material, and the amnionic membrane is adherent to the fetal side of the plate." [http://www.medilexicon.com/medicaldictionary.php?t=69523, MP:0004560] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: BTO:0002879 xref: EMAPA:31872 @@ -242667,6 +248069,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/p id: UBERON:0004029 name: canal of Schlemm def: "The vascular structure encircling the anterior chamber of the eye, through which the aqueous humor is returned to the blood circulation." [MP:0005204, Wikipedia:Schlemm's_canal] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "Schlemm's canal" EXACT [] synonym: "scleral sinus" EXACT [FMA:51873] @@ -242693,6 +248097,8 @@ id: UBERON:0004030 name: aqueous vein def: "A vessel that receives aqueous humor from the sinus venosus sclerae (canal of Schlemm)." [MP:0005207] comment: a mixture of episcleral venous blood and aqueous humor mix in this combined channel[http://www.atlasophthalmology.com] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37428 {source="MA:th"} is_a: UBERON:0003496 ! head blood vessel @@ -242707,6 +248113,8 @@ property_value: depiction "http://www.atlasophthalmology.com/media/Aqeous+Vein+P id: UBERON:0004031 name: head ectomesenchyme def: "Mesenchymal cells derived from neural crest cells that contribute to development of the hard and soft tissue in the head and neck, including the branchial arches[MP]." [MP:0006302] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ectomesenchyme" EXACT [MP:0006302] xref: FMA:318119 @@ -242720,6 +248128,8 @@ property_value: external_definition "Portion of tissue that develops from the cr id: UBERON:0004032 name: podocyte slit diaphragm def: "The thin membrane that covers the podocyte filtration slit which allows small molecules such as water, glucose, and ionic salts to pass through while retaining larger macromolecules in the bloodstream." [MP:0008060] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of CL:0000653 ! podocyte @@ -242729,6 +248139,8 @@ property_value: editor_note "TODO - submit to GO" xsd:string id: UBERON:0004033 name: podocyte slit junction def: "The gaps between the interdigitated foot processes of the podocyte." [MP:0008062] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0004120 ! mesoderm-derived structure relationship: adjacent_to GO:0098846 ! podocyte foot @@ -242739,6 +248151,8 @@ property_value: editor_note "TODO - submit to GO" xsd:string id: UBERON:0004034 name: cutaneous microfibril def: "The fiber-like strand of fibrillin that forms the scaffold of the cutaneous elastic fibers found in the extracellular matrix of the skin." [MP:0008419] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure @@ -242749,6 +248163,8 @@ relationship: part_of UBERON:0003967 ! cutaneous elastic tissue id: UBERON:0004035 name: cortical subplate def: "The transient outer neural tube region that contains the first generated post-mitotic neurons that receive synaptic input from thalamic axons and in turn project axons to the developing cortical plate." [https://github.com/obophenotype/mouse-anatomy-ontology/issues/1, MP:0008440, Wikipedia:Subplate] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebral cortex subplate" EXACT [EMAPA:32833] synonym: "SP" BROAD OMO:0003000 [BRAINSPAN:BRAINSPAN] @@ -242802,6 +248218,8 @@ is_obsolete: true id: UBERON:0004040 name: cortical intermediate zone def: "The region of the developing mammalian cortex that extends between the ventricular zone and the cortical plate (CP); normally, the IZ is a region of tangential migration of cells, and at midgestation, the lower part of the IZ develops into the subventricular zone." [MP:0008457] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebral cortex mantle layer" RELATED [EMAPA:17545] synonym: "cerebral cortex mantle zone" RELATED [] @@ -242818,6 +248236,8 @@ id: UBERON:0004041 name: spleen primary B follicle def: "The nodules of small undifferentiated B lymphocytes and follicular dendritic cells located in the spleen white pulp." [MP:0008471] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "primary spleen B cell follicle" EXACT [CL:tm] xref: EMAPA:37960 {source="MA:th"} @@ -242835,6 +248255,8 @@ id: UBERON:0004042 name: spleen secondary B follicle def: "The nodules of antigen-activated, differentiating B cells, follicular dendritic cells, antigen-presenting T cells and macrophages in the spleen white pulp." [MP:0008472] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "secondary spleen B cell follicle" EXACT [CL:tm] synonym: "splenic secondary B cell follicle" EXACT [MP:0008472] @@ -242851,6 +248273,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0004043 name: semicircular canal ampulla def: "The spherical enlargement at the base of each semicircular canal where they connect with the utricle, containing the crista ampullaris which detects movement of the fluid within the canals." [MP:0008488, Wikipedia:Osseous_ampullae] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ampullae osseae" RELATED OMO:0003011 [Wikipedia:Osseous_ampullae] synonym: "membraneous ampulla of the semicircular duct" RELATED [MP:0008488] @@ -242870,6 +248294,8 @@ property_value: editor_note "TODO check duct vs canal. Also check FMA - has many id: UBERON:0004044 name: anterior visceral endoderm def: "The extraembryonic tissue that is responsible for the proper orientation of the anterior-posterior axis of the embryo and for appropriate patterning of adjacent embryonic tissue." [MP:0008533] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "AVE" RELATED [BTO:0003361] xref: BTO:0003361 @@ -242881,6 +248307,8 @@ relationship: seeAlso UBERON:0004341 ! primitive streak id: UBERON:0004045 name: tailgut def: "The extension of the hindgut of the primitive digestive tube of the embryo, caudal to the location of the anal opening." [MP:0008787] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:36331 is_a: UBERON:0004921 ! subdivision of digestive tract @@ -242891,6 +248319,8 @@ relationship: part_of UBERON:0007144 ! embryonic post-anal tail id: UBERON:0004046 name: anterior definitive endoderm def: "The mesendoderm which first migrates from the node and which gives rise to the gut." [MP:0008926] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0000089 ! hypoblast (generic) property_value: editor_note "TODO - check" xsd:string @@ -242899,6 +248329,8 @@ property_value: editor_note "TODO - check" xsd:string id: UBERON:0004047 name: basal cistern def: "The enclosed space where the arachnoid membrane stretches between the two temporal lobes and encloses the cerebral peduncles including the structures contained in the interpeduncular fossa." [MP:0009029] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cisterna interpeduncularis" RELATED [EMAPA:19056, EMAPA:19149] synonym: "interpeduncular cistern" RELATED [EMAPA:19056, EMAPA:19149, FMA:83718] @@ -242915,6 +248347,8 @@ is_a: UBERON:0004050 ! subarachnoid cistern id: UBERON:0004048 name: pontine cistern def: "The space located on lateral aspects of the pons at the junction with the celebellum." [MP:0009030] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cisterna pontis" EXACT OMO:0003011 [FMA:83719, FMA:TA] xref: BAMS:pcis @@ -242931,6 +248365,8 @@ relationship: part_of UBERON:0000988 ! pons id: UBERON:0004049 name: cerebellomedullary cistern def: "The largest of the subarachnoid cisterns between the cerebellum and the medulla oblongata; it is divided into a posterior cerebellomedullary cistern located between the cerebellum and the posterior surface of the medulla (also called cisterna magna), and a lateral cerebellomedullary cistern located between the cerebellum and the lateral aspect of the medulla." [http://www.drugs.com/dict/cerebellomedullary-cistern.html] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "great cistern" EXACT [FMA:74517] xref: BAMS:cmcis @@ -242944,6 +248380,8 @@ is_a: UBERON:0004050 ! subarachnoid cistern id: UBERON:0004050 name: subarachnoid cistern def: "The widening portions of the subarachnoid space within the cranium where the arachnoid bridges over a depression on the surface of the brain." [MP:0009032, Wikipedia:Cistern_(neuroanatomy)] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cistern" BROAD [Wikipedia:Cistern_(neuroanatomy)] synonym: "cisterna" BROAD OMO:0003011 [Wikipedia:Cistern_(neuroanatomy)] @@ -242962,6 +248400,8 @@ property_value: external_ontology_notes "in FMA is a subdivision of arachnoid sp id: UBERON:0004051 name: lateral cerebellomedullary cistern def: "The space between the cerebellum and the lateral aspect of the medulla." [MP:0009034] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cisterna cerebellomedullaris lateralis" EXACT [MP:0009034] xref: EMAPA:37815 {source="MA:th"} @@ -242973,6 +248413,8 @@ relationship: adjacent_to UBERON:0002037 ! cerebellum id: UBERON:0004052 name: quadrigeminal cistern def: "The enclosed space extending forward between the corpus callosum and the thalamus that contains the internal cerebral veins." [MP:0009035] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ambient cistern" EXACT [FMA:74511] synonym: "cistern of great cerebral vein" EXACT [FMA:74511] @@ -242996,6 +248438,8 @@ id: UBERON:0004053 name: external male genitalia def: "The external masculine genital organs." [MP:0009199] comment: TODO: Relabel. Make distinct organ class. See https://github.com/obophenotype/uberon/issues/547 +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "external male genital organ" EXACT [BTO:0003097] @@ -243022,6 +248466,8 @@ id: UBERON:0004054 name: internal male genitalia def: "The internal masculine genital organs, including the testes, epididymides, deferent ducts, seminal vesicles, prostate, ejaculatory ducts, and bulbourethral glands." [MP:0009205] comment: TODO: Relabel. Make distinct organ class. See https://github.com/obophenotype/uberon/issues/547 +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "internal male genital organ" EXACT [BTO:0003096] @@ -243043,6 +248489,8 @@ id: UBERON:0004055 name: primitive pit def: "The small depression in the primitive streak that is caudal to the primitive node where the cells of the epiblast initially begin to invaginate during early embryogenesis." [MP:0009329, Wikipedia:Primitive_pit] subset: early_development +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EHDAA2:0001521 xref: EHDAA:551 @@ -243063,6 +248511,8 @@ id: UBERON:0004056 name: primitive groove def: "The shallow valley that extends along the length of the primitive streak[MP]." [MP:0009330, Wikipedia:Primitive_groove] subset: early_development +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EHDAA2:0001511 xref: EHDAA:547 @@ -243079,6 +248529,8 @@ property_value: external_definition "A shallow groove, the primitive groove, app id: UBERON:0004057 name: skeletal muscle fiber triad def: "The skeletal muscle fiber structure comprised of the transverse tubule and the two associated terminal cisternae; each fiber normally has thousands of triads." [MP:0009411] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0001134 ! skeletal muscle tissue @@ -243087,6 +248539,8 @@ id: UBERON:0004058 name: biliary ductule def: "One of the fine terminal elements of the bile duct system, leaving the portal canal, and pursuing a course at the periphery of a lobule of the liver[BTO]. the excretory ducts of the liver that connect the interlobular ductules to the right or left hepatic duct[MP]." [BTO:0002840, MP:0009494] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bile capillary" RELATED [BTO:0002840] synonym: "bile ductule" EXACT [BTO:0002840] @@ -243111,6 +248565,8 @@ property_value: external_ontology_notes "In ZFA, Digestive system duct that coll id: UBERON:0004059 name: spinal cord medial motor column def: "The subclasses of motor neurons which project their axons to axial muscles that lie close to the vertebral column; motor neurons in the lateral subdivision of the MMC project their axons to body wall muscles." [MP:0009686] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0003990 ! spinal cord motor column @@ -243118,6 +248574,8 @@ is_a: UBERON:0003990 ! spinal cord motor column id: UBERON:0004060 name: neural tube ventricular layer def: "The layer of undifferentiated, proliferating cells that line the neural tube lumen that is the immediate transformation of the germinal neuroepithelium." [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0009689] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ependymal layer" BROAD [NCBIBook:NBK10047] synonym: "neural tube ependymal layer" EXACT [NCBIBook:NBK10047] @@ -243142,6 +248600,8 @@ property_value: external_definition "The layer of undifferentiated, proliferatin id: UBERON:0004061 name: neural tube mantle layer def: "The layer of glia and differentiating neurons that forms as a second layer around the germinal neuroepithium; as this develops it comes to lie between the ventricular and marginal layers and includes the basal and alar plates. Develops into neurons and glia forming a gray matter layer." [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0009690] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "future brain marginal layer" RELATED [EMAPA:35360] synonym: "neural tube intermediate zone" EXACT [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0009690] @@ -243160,6 +248620,8 @@ relationship: part_of UBERON:0001049 ! neural tube id: UBERON:0004062 name: neural tube marginal layer def: "The outermost layer of the neural tube that consists of axons from the developing mantle layer and will form the white matter." [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0009691] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "brain marginal zone" RELATED [] synonym: "neural tube marginal zone" EXACT [MP:0009691] @@ -243175,6 +248637,8 @@ relationship: part_of UBERON:0001049 ! neural tube id: UBERON:0004063 name: spinal cord alar plate def: "The region of the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses; the alar plate develops into the dorsal horn in the grey matter of the spinal cord." [MP:0009692] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "alar column spinal cord" EXACT [VHOG:0000899] synonym: "spinal cord alar column" EXACT [MP:0009692] @@ -243194,6 +248658,8 @@ id: UBERON:0004064 name: neural tube basal plate def: "The region of the mantle layer of the neural tube that lies ventral to the sulcus limitans and contains primarily motor neurons and interneurons." [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0009693, Wikipedia:Basal_plate_(neural_tube)] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "basal plate" EXACT [] synonym: "basal plate of neural tube" EXACT [Wikipedia:Basal_plate_(neural_tube)] @@ -243219,6 +248685,8 @@ id: UBERON:0004066 name: frontonasal prominence alt_id: UBERON:0006237 def: "The unpaired embryonic prominence that is formed by the tissues surrounding the forebrain vesicle and develops into the forehead and bridge of the nose/snout." [MP:0009901] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "embryonic frontonasal prominence" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "forebrain prominence" RELATED [MP:0009901] @@ -243242,6 +248710,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/98/Gr id: UBERON:0004067 name: lateral nasal prominence def: "The lateral area of the two branches of a horseshoe-shaped mesenchymal swelling in the future nasal region of the embryo; it separates the olfactory pit from the developing eye and the ala of the nose/snout develops from it." [MP:0009902, Wikipedia:Lateral_nasal_prominence] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lateral nasal process" EXACT [EHDAA2:0000916] synonym: "lateral nasal swelling" RELATED [https://orcid.org/0000-0002-6601-2165] @@ -243263,6 +248733,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gr id: UBERON:0004068 name: medial nasal prominence def: "The central area of the two limbs of a horseshoe-shaped mesenchymal swelling that lie medial to the olfactory placode or pit in the future nasal region of the embryo; it joins with the ipsilateral maxillary prominence in the formation of half of the upper jaw, and the nasal tip and philtrum of the upper lip develop from it." [MP:0009903, Wikipedia:Medial_nasal_prominence] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "medial nasal process" EXACT [EHDAA2:0001076] synonym: "medial nasal swelling" RELATED [https://orcid.org/0000-0002-6601-2165] @@ -243289,6 +248761,8 @@ id: UBERON:0004069 name: accessory olfactory bulb def: "The forebrain region that coordinates sensory signaling arising from the vomeronasal organ; it is located on the dorsal-posterior portion of the main olfactory bulb, and the axons that leave the accessory olfactory bulb project to targets in the amygdala and hypothalamus." [MP:0009945, Wikipedia:Olfactory_bulb#Accessory_olfactory_bulb] comment: Projection notes: Site of termination of vomeronasal nerve; projects to: other parts of pallial amygdala, medial amygdala, subpallial nucleus (Butler and Hodos) +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "accessory (vomeronasal) bulb" EXACT [] synonym: "accessory olfactory formation" RELATED [MA:0000966] @@ -243318,6 +248792,8 @@ property_value: external_ontology_notes "NLXANAT:20090453 appears to be retired" id: UBERON:0004070 name: cerebellum vermis lobule def: "The region of a cerebellar lobule that resides in the central section of the cerebellum between the two hemispheres." [MP:0009957] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lobule of vermis" EXACT [FMA:278629] xref: EMAPA:35224 @@ -243337,6 +248813,8 @@ id: UBERON:0004073 name: cerebellum interpositus nucleus alt_id: UBERON:0019281 def: "The nucleus composed of the globose and emoliform nuclei of the cerebellum; in some mammalian species the globose nucleus is not distinguishable." [MP:0009984] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "interposed nucleus" RELATED [Wikipedia:Interposed_nucleus] synonym: "interposed nucleus of cerebellum" EXACT [] @@ -243363,6 +248841,8 @@ property_value: function_notes "modulates muscle stretch reflexes of proximal li id: UBERON:0004074 name: cerebellum vermis lobule I def: "Missing definition for term UBERON:0004074. Please replace it using linked reference." [MP:0009988] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lingula" RELATED [MA:0000998] synonym: "lingula (I)" EXACT [ABA:LING] @@ -243396,6 +248876,8 @@ property_value: editor_note "TODO FMA:61904 lingual gyrus FMA:71032 lingula gyru id: UBERON:0004075 name: cerebellum vermis lobule II def: "Missing definition for term UBERON:0004075. Please replace it using linked reference." [MP:0009989] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "central lobule" BROAD [MA:0000999] synonym: "central lobule of cerebellum" BROAD [] @@ -243419,6 +248901,8 @@ property_value: external_ontology_notes "central vs alar central? II and III? pa id: UBERON:0004076 name: cerebellum vermis lobule III def: "Missing definition for term UBERON:0004076. Please replace it using linked reference." [MP:0009990] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "central lobule" BROAD [MA:0001000] synonym: "central lobule of cerebellum" BROAD [] @@ -243443,6 +248927,8 @@ property_value: editor_note "II or III?" xsd:string [Term] id: UBERON:0004077 name: cerebellum vermis lobule IV +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "culmen of cerebellum" BROAD [] synonym: "lobule IV of cerebellum vermis" EXACT [] @@ -243466,6 +248952,8 @@ id: UBERON:0004078 name: cerebellum vermis lobule IX def: "The uvula (uvular lobe) forms a considerable portion of the inferior vermis; it is separated on either side from the tonsil by the sulcus valleculC&, at the bottom of which it is connected to the tonsil by a ridge of gray matter, indented on its surface by shallow furrows, and hence called the furrowed band." [Wikipedia:Uvula_of_cerebellum] comment: The uvula is the second largest lobule, following the culmen. It pertains to the paleocerebellum and is separated from the nodule by the posterolateral fissure. +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebellar posterior vermis lobule IX" EXACT [PMID:2022820] synonym: "lobule IX of cerebellar posterior vermis" EXACT [PMID:2022820] @@ -243496,6 +248984,8 @@ relationship: part_of UBERON:0003012 {source="NIFSTD"} ! flocculonodular lobe id: UBERON:0004079 name: cerebellum vermis lobule V def: "Missing definition for term UBERON:0004079. Please replace it using linked reference." [MP:0009993] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "culmen" BROAD [MA:0001002] synonym: "culmen of cerebellum" BROAD [] @@ -243523,6 +249013,8 @@ id: UBERON:0004080 name: cerebellum vermis lobule VI alt_id: UBERON:0000909 def: "Missing definition for term UBERON:0004080. Please replace it using linked reference." [MP:0009994] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "declive" BROAD [MA:0001003] synonym: "declive (VI)" EXACT [ABA:DEC] @@ -243552,6 +249044,8 @@ relationship: part_of UBERON:0004009 {source="MP"} ! cerebellum posterior vermis [Term] id: UBERON:0004081 name: cerebellum vermis lobule VII +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "folium-tuber vermis (VII)" EXACT [ABA:FOTU] synonym: "lobule VII of cerebellum vermis" EXACT [] @@ -243577,6 +249071,8 @@ id: UBERON:0004082 name: cerebellum vermis lobule VIII alt_id: UBERON:0002312 def: "Missing definition for term UBERON:0004082. Please replace it using linked reference." [MP:0009996] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebellum lobule VIII" EXACT [] synonym: "lobule VIII of cerebellum vermis" EXACT [] @@ -243606,6 +249102,8 @@ relationship: part_of UBERON:0004009 ! cerebellum posterior vermis id: UBERON:0004083 name: cerebellum vermis lobule X def: "Missing definition for term UBERON:0004083. Please replace it using linked reference." [MP:0009997] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lobule X of cerebellum vermis" EXACT [] synonym: "lobule X of vermis of cerebellum" RELATED [FMA:83882] @@ -243635,6 +249133,8 @@ relationship: part_of UBERON:0003012 {source="NIFSTD"} ! flocculonodular lobe id: UBERON:0004084 name: genital labium def: "One of the folds of skin which form the inner lips (labia minora) and outer lips (labia majora) on both sides of the vaginal opening." [MP:0003511] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "genital labia" EXACT OMO:0003004 [] synonym: "labia" EXACT OMO:0003004 [] @@ -243658,6 +249158,8 @@ property_value: has_relational_adjective "labial" xsd:string id: UBERON:0004085 name: labium majora def: "One of the folds of skin which form the outer lips on both sides of the vaginal opening." [MP:0003515] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "labia majorum" EXACT [] synonym: "labium majora" EXACT [] @@ -243682,6 +249184,8 @@ name: brain ventricle def: "One of the system of communicating cavities in the brain that are continuous with the central canal of the spinal cord, that like it are derived from the medullary canal of the embryo, that are lined with an epithelial ependyma, and that contain a serous fluid." [https://github.com/obophenotype/uberon/issues/300] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "brain ventricles" EXACT OMO:0003004 [] synonym: "cerebral ventricle" EXACT [HP:0002118] @@ -243710,6 +249214,8 @@ property_value: external_ontology_notes "FMA draws the distinction between e.g. id: UBERON:0004087 name: vena cava def: "Any of the veins that carries deoxygenated blood from a part of the body into the right atrium of the heart." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Venae_cavae] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "caval vein" RELATED [] synonym: "venae cavae" RELATED OMO:0003004 [Wikipedia:Venae_cavae] @@ -243736,6 +249242,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7c/H id: UBERON:0004088 name: orbital region def: "The subdivision of the face that includes the eye (eyeball plus adnexa such as eyelids) and the orbit of the skull and associated parts of the face such as the eyebrows, if present." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "content of orbital part of eye" EXACT [FMA:260119] synonym: "eye region" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -243754,6 +249262,8 @@ property_value: external_ontology_notes "in HP covers eyelid, eyebrow." xsd:stri id: UBERON:0004089 name: midface def: "The middle of the face including the nose and its associated bony structures[MW]." [HP:0000309, http://www.merriam-webster.com/medical/midface] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lower face" RELATED [] synonym: "midface/lower face" RELATED [] @@ -243771,6 +249281,8 @@ property_value: has_relational_adjective "midfacial" xsd:string id: UBERON:0004090 name: periorbital region def: "Missing definition for term UBERON:0004090. Please replace it using linked reference." [HP:0000606] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "periorbita" EXACT [FMA:59351] synonym: "periorbital area" EXACT [MA:0002875] @@ -243788,6 +249300,8 @@ property_value: external_ontology_notes "does not contain any subparts in FMA. I id: UBERON:0004092 name: hypothalamus-pituitary axis def: "Missing definition for term UBERON:0004092. Please replace it using linked reference." [HP:0000864] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0000467 ! anatomical system relationship: in_taxon NCBITaxon:7711 ! Chordata @@ -243799,6 +249313,8 @@ name: odontoid process of cervical vertebra 2 alt_id: UBERON:0005210 def: "The toothlike process on the upper surface of the axis, which articulates with the atlas above[GAID]." [GAID:238, HP:0003310, Wikipedia:Dens_(anatomy)] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "axis dens" EXACT [FMA:24043] synonym: "axis odontoid process" EXACT [MA:0002872] @@ -243835,6 +249351,8 @@ is_obsolete: true id: UBERON:0004098 name: tibial plateaux def: "Missing definition for term UBERON:0004098. Please replace it using linked reference." [HP:0003832] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone @@ -243844,6 +249362,8 @@ relationship: part_of UBERON:0000979 ! tibia id: UBERON:0004099 name: joint space of elbow def: "Joint cavity shared by all the joints of the elbow. The elbow joint is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis. All three share a joint cavity which is highly sinuated/scalloped/coved. Joint spaces of the elbow summarizes the joint cavity shared by all three adjoining joints of the elbow joint." [HP:0003943] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "synovial cavity of elbow joint" EXACT [FMA:38911] xref: FMA:38911 @@ -243858,6 +249378,8 @@ id: UBERON:0004100 name: renal collecting system def: "The collecting duct system of the kidney consists of a series of tubules and ducts that connect the nephrons to the ureter. It participates in electrolyte and fluid balance through reabsorption and excretion, processes regulated by the hormones aldosterone and antidiuretic hormone." [HP:0004742, Wikipedia:Collecting_duct_system] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "collecting duct system" EXACT [Wikipedia:Collecting_duct_system] synonym: "kidney collecting duct system" EXACT [Wikipedia:Collecting_duct_system] @@ -243874,6 +249396,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/02/Gr id: UBERON:0004101 name: nasolabial region def: "Missing definition for term UBERON:0004101. Please replace it using linked reference." [HP:0005289] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0004121 ! ectoderm-derived structure @@ -243883,6 +249407,8 @@ relationship: part_of UBERON:0000004 ! nose id: UBERON:0004103 name: alveolar ridge def: "One of the two jaw ridges either on the roof of the mouth between the upper teeth and the hard palate or on the bottom of the mouth behind the lower teeth[WP]. The alveolar ridges contain the sockets (alveoli) of the teeth[HP]." [HP:0006477, Wikipedia:Alveolar_ridge] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "alveolar body" EXACT [MP:0004189] synonym: "alveolar bone" EXACT [MP:0004189] @@ -243909,6 +249435,7 @@ property_value: external_ontology_notes "in BTO, this is part of an embryo" xsd: id: UBERON:0004104 name: hairline def: "Anatomical line demarcating the boundary between forehead and scalp." [Wikipedia:Hairline] +subset: human_subset subset: pheno_slim xref: FMA:285412 is_a: UBERON:0006800 ! anatomical line @@ -243924,6 +249451,8 @@ relationship: part_of UBERON:0000033 ! head id: UBERON:0004105 name: subungual region def: "Region beneath a nail or claw." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: CALOHA:TS-2351 is_a: UBERON:0000477 ! anatomical cluster @@ -243935,6 +249464,8 @@ property_value: has_relational_adjective "subungual" xsd:string id: UBERON:0004106 name: crus of ear def: "Horizontal piece of cartilage located outside the ear canal that divides the upper and lower parts of the ear." [HP:0009895] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "crus helicis" EXACT OMO:0003011 [FMA:61024, FMA:TA] synonym: "crus of helical part of auricular cartilage" EXACT [] @@ -243952,6 +249483,8 @@ id: UBERON:0004108 name: clivus of occipital bone def: "Part of the cranium, the clivus is a shallow depression behind the dorsum sellC& that slopes obliquely backward. It forms a gradual sloping process at the anterior most portion of the basilar occipital bone at its junction with the sphenoid bone. On axial planes, it sits just posterior to the sphenoid sinuses. Just lateral to the clivus bilaterally is the foramen lacerum which contains the internal carotid artery, proximal to its anastamosis with the Circle of Willis. Posterior to the clivus is the basilar artery. The clivus supports the upper part of the pons." [HP:0010558, Wikipedia:Clivus_(anatomy)] comment: The clivus is an important landmark for checking for anatomical atlanto-occipital alignment; the clivus, when viewed on a lateral C-spine X-ray, forms a line which, if extended, is known as Wackenheim's clivus line. Wackenheim's clivus line should pass through the dens of the axis or be tangential to it. +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "clivus" EXACT [HP:0010558] synonym: "clivus ossis occipitalis" RELATED [FMA:75747] @@ -243974,6 +249507,8 @@ property_value: editor_note "check relationships." xsd:string id: UBERON:0004109 name: cortex of humerus def: "The outer or sperficial part of the humerus." [PHENOSCAPE:ad] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "compact bone of humerus" EXACT [FMA:31542] synonym: "cortex of the humerus" EXACT [] @@ -243992,6 +249527,8 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:0004110 name: midnasal cavity def: "An anatomical cavity that is the combination of the cavity between the nares and the choanae[HP,modified]." [HP:0010641] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:59675 is_a: UBERON:0002553 ! anatomical cavity @@ -244004,6 +249541,8 @@ id: UBERON:0004111 name: anatomical conduit def: "Any tube, opening or passage that connects two distinct anatomical spaces." [http://orcid.org/0000-0002-6601-2165] subset: common_anatomy +subset: human_subset +subset: mouse_subset synonym: "foramen" NARROW [EHDAA2:0003080] synonym: "foramina" NARROW OMO:0003004 [https://orcid.org/0000-0002-6601-2165] synonym: "opening" RELATED [] @@ -244031,6 +249570,8 @@ id: UBERON:0004113 name: muscle of auditory ossicle alt_id: UBERON:0004112 def: "A muscle of the tympanic cavity that attaches to an auditory ossicle." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "auditory ossicles muscle" EXACT [FMA:49026] synonym: "muscle of auditory ossicles" EXACT [FMA:49026] synonym: "muscle of middle ear" RELATED [] @@ -244056,6 +249597,8 @@ property_value: function_notes "attenuate low-frequency sounds, reduce masking o id: UBERON:0004114 name: tympanic cavity def: "Small cavity surrounding the bones of the middle ear." [Wikipedia:Tympanic_cavity] +subset: human_subset +subset: mouse_subset synonym: "anatomical cavity of middle ear" EXACT [OBOL:automatic] synonym: "cavitas tympani" EXACT OMO:0003011 [Wikipedia:Tympanic_cavity] synonym: "cavitas tympanica" RELATED [BTO:0002098] @@ -244085,6 +249628,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/19/Gr id: UBERON:0004115 name: blood vessel of tympanic cavity def: "A blood vessel that is part of a tympanic cavity [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anatomical cavity of middle ear blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of anatomical cavity of middle ear" EXACT [OBOL:automatic] synonym: "blood vessel of cavity of middle ear" EXACT [OBOL:automatic] @@ -244107,6 +249652,8 @@ relationship: part_of UBERON:0001756 ! middle ear id: UBERON:0004116 name: nerve of tympanic cavity def: "A nerve that is part of a tympanic cavity [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anatomical cavity of middle ear nerve" EXACT [OBOL:automatic] synonym: "cavity of middle ear nerve" EXACT [OBOL:automatic] synonym: "middle ear anatomical cavity nerve" EXACT [OBOL:automatic] @@ -244131,6 +249678,8 @@ name: pharyngeal pouch def: "An internal pocketing of pharyngeal endoderm that contacts a region of ectoderm (a pharyngeal cleft) and interdigitates in the anterior and posterior directions with the pharyngeal arches." [http://orcid.org/0000-0002-6601-2165, PMID:23020903, ZFA:0001106] comment: The pouches are polarized structures. For example, whereas the rostral half of each pouch expresses Bmp-7, the caudal half expresses FGF-8 and the dorsal aspect of each pouch is marked via its expression of Pax-1. each pouch has an individual sense of identity. Shh expression is a prominent early feature of the caudal endoderm of the second arch, and individual pouches mark the anterior limits of expression of Hox genes within the pharyngeal endoderm; Hox-a2 has a rostral boundary at the second pouch, Hox-a3 at the third pouch and Hox-a4 at the most caudal pouch[PMID:16313389] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "branchial pouch" EXACT [Wikipedia:Branchial_pouch] @@ -244170,6 +249719,8 @@ property_value: homology_notes "A conserved feature of all vertebrate embryos is id: UBERON:0004118 name: vasculature of iris def: "A vasculature that is part of a iris [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "iris blood vessels" EXACT [ZFA:0005568] synonym: "iris vascular network" EXACT [OBOL:automatic] @@ -244186,6 +249737,8 @@ id: UBERON:0004119 name: endoderm-derived structure def: "An anatomical structure that develops (entirely or partially) from the endoderm." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: develops_from UBERON:0000925 ! endoderm @@ -244197,6 +249750,8 @@ id: UBERON:0004120 name: mesoderm-derived structure def: "An anatomical structure that develops (entirely or partially) from the mesoderm." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "mesodermal derivative" EXACT [FBbt:00025998] is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure @@ -244209,6 +249764,8 @@ id: UBERON:0004121 name: ectoderm-derived structure def: "An anatomical structure that develops (entirely or partially) from the ectoderm." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "ectodermal deriviative" EXACT [FBbt:00025990] is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure @@ -244221,6 +249778,8 @@ id: UBERON:0004122 name: genitourinary system def: "Anatomical system that has as its parts the organs concerned with the production and excretion of urine and those concerned with reproduction." [VHOG:0000286] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "genito-urinary system" RELATED [FMA:280610] synonym: "genitourinary tract" RELATED [] @@ -244263,6 +249822,8 @@ property_value: homology_notes "Kidneys and gonads (of vertebrates) develop from id: UBERON:0004123 name: myocardial layer def: "Any of the layers of the myocardium. Example: compact layer, trabecular layer." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: non_informative subset: pheno_slim synonym: "layer of myocardium" EXACT [] @@ -244280,6 +249841,8 @@ id: UBERON:0004124 name: myocardium trabecular layer def: "The layer of the myocardium composed of projections of contractile myocytes. The trabecular layer is bounded internally by the endocardium. In zebrafish, unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae have more strut-like character, and are more uniform without apparent regional differences[ZFA]." [ZFA:0005059] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "heart muscle trabecula" RELATED [] synonym: "heart muscle trabeculae" RELATED OMO:0003004 [] @@ -244304,6 +249867,8 @@ property_value: external_definition "The layer of the myocardium composed of pro id: UBERON:0004125 name: myocardial compact layer def: "Outer dense layer of the myocardium uniting the epicardium and myocardium[MP]." [MP:0004056] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "compact subepicardial layer" EXACT [MP:0004056] synonym: "compact subepicardial myocardium" RELATED [MP:0004056] @@ -244321,6 +249886,8 @@ relationship: contributes_to_morphology_of UBERON:0002349 ! myocardium id: UBERON:0004126 name: trabecular layer of ventricle def: "A myocardium trabecular layer that is part of a cardiac ventricle." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "myocardium of region of ventricle" EXACT [FMA:83511] synonym: "trabecular cardiac ventricle muscle" EXACT [GO:0003222] @@ -244340,6 +249907,8 @@ property_value: editor_note "TODO - check FMA" xsd:string id: UBERON:0004127 name: compact layer of ventricle def: "The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle." [ZFA:0005062] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "compact cardiac ventricle muscle" EXACT [] synonym: "ventricle myocardium compact zone" EXACT [MP:0010556] @@ -244362,6 +249931,8 @@ id: UBERON:0004128 name: optic vesicle def: "The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup[GO]. Portion of tissue that is comprised of neuroepitheium which has pinched off from the anterior neural keel and will form the optic cup[ZFA]." [GO:0003404, Wikipedia:Optic_vesicles] comment: Genes: Six3, Pax6, Rx1 are expressed together in the tip of the neural plate [ISBN:9780878932504 "Developmental Biology"]. Development notes: During subsequent develop- ment, the optic vesicle invaginates and becomes a two-layered structure with an inner neural retina and outer retinal pigment epithelium. As soon as the developing optic vesicle makes contact with the overlying ectoderm, it induces the ectoderm to thicken and form the lens placode [PMID:16496288] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "evagination" RELATED [] @@ -244393,6 +249964,8 @@ property_value: homology_notes "(...) an essentially similar sequence of events id: UBERON:0004129 name: growth plate cartilage def: "Cartilage that will provide a scaffold for mineralization of endochondral bones as they elongate or grow." [GO:0003417] +subset: human_subset +subset: mouse_subset synonym: "growth plate" RELATED [] is_a: UBERON:0002418 ! cartilage tissue relationship: in_taxon NCBITaxon:7742 ! Vertebrata @@ -244404,6 +249977,8 @@ relationship: surrounds UBERON:0004763 ! endochondral bone tissue id: UBERON:0004130 name: cerebellar layer def: "A cortical cell layer of the cerebellum. Examples: the granular (inner+outer) layer, molecular layer, Purkinje cell layer, and the ventricular layer of the embryo." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Cortical_Cell_Layer_of_the_Cerebellum] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cell layer of cerebellar cortex" EXACT [] synonym: "cytoarchitectural part of the cerebellar cortex" EXACT [BIRNLEX:880] @@ -244429,6 +250004,8 @@ relationship: part_of UBERON:0002129 ! cerebellar cortex id: UBERON:0004132 name: trigeminal sensory nucleus def: "The sensory trigeminal nerve nuclei are the largest of the cranial nerve nuclei, and extend through the whole of the midbrain, pons and medulla. The nucleus is divided into three parts, from rostral to caudal (top to bottom in humans): * The mesencephalic nucleus * The chief sensory nucleus (or pontine nucleus or main sensory nucleus or primary nucleus) * The spinal trigeminal nucleus[WP]." [Wikipedia:Trigeminal_nuclei] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "sensory trigeminal nuclei" EXACT OMO:0003004 [TAO:0000433] synonym: "sensory trigeminal nucleus" EXACT [ZFA:0000433] @@ -244452,6 +250029,8 @@ property_value: editor_note "TODO - check ZFA link. note this is part of medulla id: UBERON:0004133 name: salivatory nucleus def: "Missing definition for term UBERON:0004133. Please replace it using linked reference." [GO:0021751] +subset: human_subset +subset: mouse_subset synonym: "salivary nucleus" EXACT [GO:0021751] is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus @@ -244462,6 +250041,8 @@ id: UBERON:0004134 name: proximal tubule def: "In mammals, the proximal tubule is a nephron tubule that connects Bowman's capsule to the loop of Henle. It has a brush border epithelial morphology[GO]." [GO:0072014] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "kidney proximal tubule" EXACT [MA:0002611] synonym: "proximal kidney tubule" EXACT [MESH:A05.810.453.736.560.570] synonym: "renal proximal tubule" EXACT [] @@ -244482,6 +250063,8 @@ property_value: editor_note "TODO - ensure definition works across species." xsd id: UBERON:0004135 name: distal tubule def: "The distal tubule is a nephron tubule that consists of the distal convoluted tubule and distal straight tubule segments." [GO:0072017] +subset: human_subset +subset: mouse_subset synonym: "kidney distal tubule" EXACT [MA:0002633] synonym: "renal distal tubule" EXACT [] xref: BTO:0000482 @@ -244496,6 +250079,8 @@ relationship: mutually_spatially_disjoint_with UBERON:0012424 ! brush border lay id: UBERON:0004136 name: intermediate tubule def: "The intermediate tubule is a nephron tubule that lies between the proximal and distal tubules." [GO:0072018] +subset: human_subset +subset: mouse_subset synonym: "renal intermediate tubule" EXACT [] synonym: "tubulus attenuatus" EXACT [FMA:17718] xref: FMA:17718 @@ -244507,6 +250092,8 @@ property_value: editor_note "TODO - check for applicability across species" xsd: id: UBERON:0004138 name: somitomeric trunk muscle def: "The somitomeric trunk muscle is derived from somitomeric mesoderm. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. An example of this process is found in Mus musculus.[GO]." [GO:0002075] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001774 ! skeletal muscle of trunk relationship: develops_from UBERON:0002329 ! somite relationship: part_of UBERON:0002100 ! trunk @@ -244516,6 +250103,8 @@ property_value: editor_note "TODO - find N+S conditions. SMT & develops_from som id: UBERON:0004139 name: cardiogenic plate def: "The first recognizable structure derived from the heart field." [GO:0003142] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cardiac crescent" RELATED [EMAPA:16106] synonym: "cardiogenic crescent" RELATED [GO:0003142] @@ -244534,6 +250123,8 @@ property_value: homology_notes "(In vertebrates) The embryonic mesoderm is the s id: UBERON:0004140 name: primary heart field def: "A specific region of the lateral mesoderm that will form the primary beating heart tube. In mammals the primary heart field gives rise to the left ventricle." [GO:0003138, GOC:mtg_heart, GOC:rl] +subset: human_subset +subset: mouse_subset synonym: "FHF" RELATED OMO:0003000 [XAO:0004185] synonym: "first heart field" EXACT [XAO:0004185] synonym: "heart field" RELATED [XAO:0004185] @@ -244553,6 +250144,8 @@ id: UBERON:0004141 name: heart tube def: "An epithelial tube that will give rise to the mature heart." [GO:0003143, GOC:mtg_heart] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "embryonic heart tube" EXACT [GO:0003143] @@ -244577,6 +250170,8 @@ property_value: external_definition "the paired, longitudinal, endothelial-lined id: UBERON:0004142 name: outflow tract septum def: "The outflow tract septum is a partition in the outflow tract." [GO:0003148] +subset: human_subset +subset: mouse_subset xref: XAO:0004141 is_a: UBERON:0002099 ! cardiac septum intersection_of: UBERON:0002099 ! cardiac septum @@ -244587,6 +250182,8 @@ relationship: part_of UBERON:0004145 ! outflow tract id: UBERON:0004145 name: outflow tract def: "The outflow tract is the portion of the heart through which blood flows into the arteries." [GO:0003151] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "arterial (outflow) pole" RELATED [PMID:20735616] synonym: "cardiac outflow tract" EXACT [PMID:20735616] @@ -244610,6 +250207,8 @@ property_value: taxon_notes "Depending on the species, attached at the cardiac o id: UBERON:0004146 name: His-Purkinje system def: "The His-Purkinje system receives signals from the AV node and is composed of the fibers that regulate cardiac muscle contraction in the ventricles." [GO:0003164, https://github.com/geneontology/go-ontology/issues/12451] +subset: human_subset +subset: mouse_subset synonym: "His-Purkinji network" EXACT [] synonym: "HPS" EXACT OMO:0003000 [] synonym: "VCS" EXACT [] @@ -244625,6 +250224,8 @@ property_value: external_definition "the intraventricular conduction system from id: UBERON:0004148 name: cardiac vein def: "Vein of heart that drains the myocardium." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cardiac vein" EXACT [FMA:12846] synonym: "coronary vein" EXACT [ZFA:0005814] @@ -244658,6 +250259,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0004149 name: ventriculo bulbo valve def: "A heart valve located between the ventricle and bulbus arteriosus." [GO:0003173] +subset: human_subset +subset: mouse_subset synonym: "bulboventricular valve" EXACT [ZFA:0001375] xref: TAO:0001375 xref: ZFA:0001375 @@ -244668,6 +250271,8 @@ relationship: develops_from UBERON:0002062 {source="ZFA"} ! endocardial cushion id: UBERON:0004150 name: coronary sinus valve def: "Vestigial cardiac valve which is continuous with the valve of the inferior vena cava[FMA]." [GO:0003178] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "thebesian valve" EXACT [] synonym: "thebesius valve" EXACT [] @@ -244683,6 +250288,8 @@ id: UBERON:0004151 name: cardiac chamber def: "A cardiac chamber surrounds an enclosed cavity within the heart." [GO:0003205] comment: generic enough to cover FBbt:00003156 heart chamber but this is a cavity. GO defines it as the cavity. TODO - move subclasses. Note this also includes sinus venosus +subset: human_subset +subset: mouse_subset synonym: "chamber of heart" EXACT [] synonym: "heart chamber" EXACT [] xref: FMA:7095 @@ -244696,6 +250303,8 @@ id: UBERON:0004152 name: bulbus arteriosus def: "The bulbus arteriosus is an elastic heart chamber[GO]. Multi-tissue structure that consists of three layers and through which the blood exits the heart. The bulbus arteriosus is a pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches[ZFA]." [GO:0003232, PMID:15108157] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "truncus" EXACT [ZFA:0000173] xref: EFO:0003505 xref: TAO:0000173 @@ -244709,6 +250318,8 @@ property_value: taxon_notes "replaces conus arteriosis in cartilaginous fish" xs id: UBERON:0004153 name: ventricular septum intermedium def: "Endocardial cushions project into the atrial canal, and, meeting in the middle line, unite to form the septum intermedium which divides the canal into two channels, the future right and left atrioventricular orifices[Gray's via WP]." [GO:0003282, Wikipedia:Septum_intermedium] +subset: human_subset +subset: mouse_subset synonym: "septum intermedium" EXACT [] xref: SCTID:361468003 xref: Wikipedia:Septum_intermedium @@ -244722,6 +250333,8 @@ id: UBERON:0004154 name: atrial septum primum alt_id: UBERON:0004157 def: "In the developing heart, the cavity of the primitive atrium becomes subdivided into right and left chambers by a septum, the septum primum, which grows downward into the cavity. The increasingly smaller gap below it (before it fuses with the endocardial cushion) is known as the ostium primum. The septum primum eventually fuses with the endocardial cushion, closing the ostium primum off completely. Meanwhile, perforations appear in the superior part of the septum primum, forming the ostium secundum. This will eventually form part of the fossa ovalis." [GO:0003284] +subset: human_subset +subset: mouse_subset synonym: "atrial septum primum" EXACT [GO:0003289] synonym: "interatrial septum primum" EXACT [EHDAA2:0001825] synonym: "septum primum" EXACT [FMA:63909] @@ -244746,6 +250359,8 @@ name: atrial septum secundum alt_id: UBERON:0004158 def: "Missing definition for term UBERON:0004155. Please replace it using linked reference." [GO:0003285] comment: The septum secundum, semilunar in shape, grows downward from the upper wall of the atrium immediately to the right of the primary septum and ostium secundum. Shortly after birth it fuses with the septum primum, and consequently the foramen ovale is closed, but sometimes the fusion is incomplete and the upper part of the foramen remains patent. The limbus fossae ovalis denotes the free margin of the septum secundum. +subset: human_subset +subset: mouse_subset synonym: "interatrial septum secundum" EXACT [EHDAA2:0001827] synonym: "septum secundum" EXACT [FMA:63910] xref: EHDAA2:0001827 @@ -244765,12 +250380,16 @@ property_value: homology_notes "The tetrapod clade develops a complete atrial se id: UBERON:0004159 name: atrial septum intermedium def: "Missing definition for term UBERON:0004159. Please replace it using linked reference." [GO:0003291] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002085 ! interatrial septum [Term] id: UBERON:0004160 name: proepicardium def: "An embryonic group of progenitor cells that forms from an outpouching of the septum transversum near the venous pole of the heart and gives rise to the epicardium." [GO:0003342, http://en.wiktionary.org/wiki/proepicardium] +subset: human_subset +subset: mouse_subset synonym: "proepicardial cluster" EXACT [ZFA:0005808] synonym: "proepicardial organ" EXACT [ZFIN:ZDB-PUB-080218-16] xref: EMAPA:36025 @@ -244785,6 +250404,8 @@ property_value: taxon_notes "Proepicardial clusters in Zebrafish form on the per id: UBERON:0004161 name: septum transversum def: "A thick plate of mesodermal tissue that occupies the space between the thoracic cavity and yolk stalk in the early embryo, forming a transverse partition partially separating the coelomic cavity into thoracic and abdominal portions. It gives rise to the central tendon of the diaphragm[VHOG]." [VHOG:0000019, Wikipedia:Septum_transversum] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "transverse septum" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EHDAA2:0001829 @@ -244808,6 +250429,8 @@ property_value: homology_notes "In hagfishes a transverse septum extends upward id: UBERON:0004162 name: pulmonary myocardium def: "The pulmonary myocardium is the myocardial tissue present in the pulmonary vein." [GO:0003350] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002036 ! striated muscle tissue relationship: part_of UBERON:0002016 ! pulmonary vein relationship: part_of UBERON:0002349 ! myocardium @@ -244816,6 +250439,8 @@ relationship: part_of UBERON:0002349 ! myocardium id: UBERON:0004163 name: anterior ectodermal midgut def: "Portions of the midgut that are derived from ectoderm." [GO:0007441] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0000924 ! ectoderm @@ -244825,6 +250450,8 @@ relationship: part_of UBERON:0001555 ! digestive tract id: UBERON:0004164 name: branchiomeric muscle def: "A jaw muscle that arises from cranial mesenchyme and is innervated by cranial nerves." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "branchial head muscle" EXACT [XAO:0004325] synonym: "branchiomeric skeletal muscle" EXACT [GO:0014707] xref: Wikipedia:Branchiomeric_musculature @@ -244842,6 +250469,8 @@ property_value: taxon_notes "It has been hypothesized that Haikouella must have id: UBERON:0004166 name: superior reticular formation def: "Missing definition for term UBERON:0004166. Please replace it using linked reference." [GO:0021729, GO_REF:0000021] +subset: human_subset +subset: mouse_subset is_a: UBERON:0007245 {source="https://orcid.org/0000-0002-6601-2165"} ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain relationship: part_of UBERON:0002559 {source="GO"} ! medullary reticular formation @@ -244852,6 +250481,8 @@ id: UBERON:0004167 name: orbitofrontal cortex def: "The region of the cerebral cortex covering the basal surface of the frontal lobes; this region normally controls emotion and decision making." [GO:0021769, MGI:csmith, MP:0004170] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fronto-orbital cortex" EXACT [] synonym: "orbital frontal cortex" EXACT [BIRNLEX:1049, DHB:OFC] @@ -244876,6 +250507,8 @@ property_value: external_ontology_notes "this is a gyrus in FMA" xsd:string {ext id: UBERON:0004170 name: spinal cord ventral commissure def: "The band of nerve fibers which cross the midline of the spinal cord ventral to the central canal and posterior grey commissure[MP]. The anterior (or ventral) white commissure, also known as the alba anterior medullae spinalis, is a bundle of nerve fibers which cross the midline of the spinal cord just anterior to the gray commissure. A N4 fibers and C fibers carrying pain sensation in the spinothalamic tract contribute to this commissure, as do fibers of the anterior corticospinal tract, which carry motor signals from the primary motor cortex[WP]." [GO:0021965, MP:0009695, Wikipedia:Anterior_white_commissure] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "alba anterior medullae spinalis" RELATED OMO:0003011 [Wikipedia:Anterior_white_commissure] synonym: "anterior commissure" RELATED INCONSISTENT [MP:0009695] @@ -244905,6 +250538,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gr id: UBERON:0004171 name: trigeminothalamic tract def: "The trigeminothalamic tract is one of the major routes of nociceptive and temperature signaling from the face." [GO:0021974] +subset: human_subset +subset: mouse_subset synonym: "tractus trigeminothalamicus" EXACT OMO:0003011 [FMA:83852, FMA:TA] synonym: "trigeminal tract" RELATED [BIRNLEX:4097] xref: BAMS:tth @@ -244921,6 +250556,8 @@ relationship: part_of UBERON:0003942 ! somatosensory system id: UBERON:0004172 name: pons reticulospinal tract def: "Axon tract that carries efferent (outgoing) action potentials from the cell body in the pons towards target cells in the spinal cord." [GO:0021975] +subset: human_subset +subset: mouse_subset xref: SCTID:362404001 is_a: UBERON:0001018 ! axon tract relationship: overlaps UBERON:0000988 ! pons @@ -244930,6 +250567,8 @@ relationship: overlaps UBERON:0002240 ! spinal cord id: UBERON:0004173 name: medulla reticulospinal tract def: "Axon tract that carries efferent (outgoing) action potentials from the cell body in the medulla towards target cells in the spinal cord[GO]." [GO:0021976] +subset: human_subset +subset: mouse_subset synonym: "medullary reticulospinal tract" EXACT [FMA:73989] xref: FMA:73989 xref: neuronames:2838 @@ -244953,6 +250592,8 @@ name: internal genitalia def: "The internal genitalia are the internal sex organs such as the uterine tube, the uterus and the vagina in female mammals, and the testis, seminal vesicle, ejaculatory duct and prostate in male mammals." [GO:0035260] comment: TODO: make a subdivision of reproductive system. Relabel. See https://github.com/obophenotype/uberon/issues/547 subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "internal genitalia" EXACT [] @@ -244968,6 +250609,8 @@ id: UBERON:0004176 name: external genitalia def: "The external genitalia are the outer sex organs, such as the penis or vulva in mammals." [GO:0035261] comment: TODO: make a subdivision of reproductive system. Relabel. See https://github.com/obophenotype/uberon/issues/547 +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "external genitalia" EXACT [] @@ -244982,6 +250625,8 @@ relationship: part_of UBERON:0000990 ! reproductive system id: UBERON:0004177 name: hemopoietic organ def: "Organ that is part of the hematopoietic system." [GOC:Obol] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "haematological system organ" EXACT [OBOL:automatic] @@ -245015,6 +250660,8 @@ id: UBERON:0004178 name: aorta smooth muscle tissue def: "The nonstriated, involuntary muscle tissue located in the wall of the aorta." [MGI:csmith, MP:0009865] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "aorta non-striated muscle" EXACT [OBOL:automatic] synonym: "aorta smooth muscle" EXACT [OBOL:automatic] @@ -245037,6 +250684,8 @@ id: UBERON:0004179 name: prostate glandular acinus def: "A saclike structure of the prostate gland, comprised of at least three cell layers: an innermost layer of secretory columnar luminal epithelium, a middle layer of squamous basal epithelium that also contains neuroendocrine cells, transit amplifying cells, and stem cells, and an outer layer of smooth muscle intermixed with other stromal cells." [GO:0060525, PMID:18977204] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "prostatic acinus" EXACT [FMA:66808] synonym: "prostatic follicle" EXACT [FMA:66808] xref: FMA:66808 @@ -245054,6 +250703,8 @@ property_value: editor_note "the muscle layer is implicitly treated as outside t id: UBERON:0004180 name: mammary gland fat def: "The mammary fat is an adipose structure in the gland that is invaded by the mammary ducts." [GO:0060611] +subset: human_subset +subset: mouse_subset synonym: "adipose tissue of lactiferous gland" EXACT [OBOL:automatic] synonym: "adipose tissue of mammary gland" EXACT [OBOL:automatic] synonym: "fat tissue of lactiferous gland" EXACT [OBOL:automatic] @@ -245088,6 +250739,8 @@ relationship: part_of UBERON:0001911 ! mammary gland id: UBERON:0004182 name: mammary gland cord def: "The solid cord of epithelial cells that emerges from the mammary bud and grows down from the primary mammary mesenchyme and into a second stromal compartment, the fat pad precursor, beneath the dermis." [MP:0013725] +subset: human_subset +subset: mouse_subset synonym: "lactiferous gland cord" EXACT [] synonym: "mammary cord" EXACT [] synonym: "mammary sprout" RELATED [] @@ -245104,6 +250757,7 @@ property_value: taxon_notes "in female mouse embryos, the primary mammary cord ( id: UBERON:0004183 name: placental labyrinth blood vessel def: "The embryonic vessels grow through the layer to come in close contact with the maternal blood supply." [GO:0060716] +subset: mouse_subset synonym: "blood vessel of labyrinthine layer" EXACT [OBOL:automatic] synonym: "blood vessel of labyrinthine layer of placenta" EXACT [OBOL:automatic] synonym: "blood vessel of placenta labyrinth" EXACT [OBOL:automatic] @@ -245122,6 +250776,8 @@ name: prostate gland stroma alt_id: UBERON:0005084 def: "The prostate gland stroma is made up of the mesenchymal or fibroblast cells of the prostate gland." [GO:0060741] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "prostate stroma" EXACT [OBOL:automatic] synonym: "prostatic stroma" EXACT [FMA:45719] synonym: "stroma of glandular part of prostate" NARROW [FMA:74349, OBOL:automatic] @@ -245145,6 +250801,8 @@ property_value: editor_note "TODO - check also FMA Stroma of glandular part of p id: UBERON:0004185 name: endodermal part of digestive tract def: "A portions of the gut that is derived from endoderm." [GO:0061031] +subset: human_subset +subset: mouse_subset synonym: "endodermal gut" EXACT [] synonym: "gut endoderm" EXACT [EMAPA:32930] xref: EMAPA:32930 @@ -245160,6 +250818,8 @@ relationship: part_of UBERON:0001555 ! digestive tract id: UBERON:0004186 name: olfactory bulb mitral cell layer def: "The mitral cell layer is composed of pyramidal neurons whose cell bodies are located between the granule cell layer and the plexiform layer." [GO:0061034] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "mitral cell body layer" EXACT [NLXANAT:100201] synonym: "mitral cell layer" EXACT [BTO:0001108] @@ -245180,6 +250840,7 @@ property_value: external_ontology_notes "NIF divides this into main and accessor id: UBERON:0004187 name: Harderian gland def: "The Harderian gland is an anterior orbital gland usually associated with the nictitating membrane, and produces and secretes a variety of substances to the eye, depending upon the species[GO]." [GO:0070384, Wikipedia:Harderian_gland] +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "deep gland of the nictitating membrane" RELATED [PMID:7559104] @@ -245231,6 +250892,8 @@ id: UBERON:0004188 name: glomerular epithelium def: "The glomerular epithelium is an epithelial tissue that covers the outer surfaces of the glomerulus. The glomerular epithelium consists of both parietal and visceral epithelium. Metanephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros." [GO:0072010] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "epithelium of glomerulus" EXACT [] synonym: "epithelium of kidney glomerulus" EXACT [] synonym: "epithelium of renal glomerulus" EXACT [] @@ -245251,6 +250914,8 @@ property_value: editor_note "TODO - check - GO says outer, BTO says inner. Make id: UBERON:0004189 name: glomerular endothelium def: "The glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus." [GO:0072011] +subset: human_subset +subset: mouse_subset synonym: "endothelium of renal glomerulus" EXACT [OBOL:automatic] synonym: "renal glomerulus endothelium" EXACT [OBOL:automatic] xref: BTO:0004631 @@ -245266,6 +250931,8 @@ id: UBERON:0004190 name: renal glomerulus vasculature def: "The glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the glomerulus." [GO:0072012] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "glomerulus vasculature" EXACT [OBOL:automatic] synonym: "renal glomerulus vascular network" EXACT [OBOL:automatic] synonym: "renal glomerulus vasculature" EXACT [OBOL:automatic] @@ -245282,6 +250949,8 @@ id: UBERON:0004193 name: loop of Henle ascending limb thin segment def: "A sub-portion of the loop of Henle in the nephron of the kidney that is permeable to ions but not to water." [GO:0072021, Wikipedia:Thin_ascending_limb_of_loop_of_Henle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ascending limb thin segment of loop of Henle" EXACT [] synonym: "ascending thin limb" EXACT [FMA:17720] @@ -245305,6 +250974,8 @@ property_value: editor_note "check relationship to distal tubule" xsd:string id: UBERON:0004194 name: long nephron def: "Long nephrons are associated with juxtamedullary glomeruli and extend to the inner medulla." [GO:0072029] +subset: human_subset +subset: mouse_subset synonym: "juxtamedullary nephron" RELATED [GO:0072029, http://sourceforge.net/tracker/?func=detail&aid=3031362&group_id=36855&atid=440764] xref: FMA:272054 xref: NCIT:C32892 @@ -245315,6 +250986,8 @@ is_a: UBERON:0001285 ! nephron id: UBERON:0004195 name: short nephron def: "Short nephrons are associated with mid-cortical glomeruli, and have no short ascending limb, so the limb is situated in the outer medulla." [GO:0072030] +subset: human_subset +subset: mouse_subset xref: FMA:272051 is_a: UBERON:0001285 ! nephron @@ -245324,6 +250997,8 @@ name: proximal convoluted tubule segment 1 alt_id: UBERON:0006432 def: "The S1 portion is the initial portion of the proximal convoluted tubule and is responsible for avid reabsorption of water and solutes[GO]." [GO:0072031, http://sourceforge.net/tracker/?func=detail&atid=440764&aid=3298740&group_id=36855] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "proximal tubule segment 1" EXACT [MA:0002612] synonym: "S1" BROAD [GO:0072031] synonym: "S1 portion of renal tubule" EXACT [] @@ -245343,6 +251018,8 @@ name: proximal convoluted tubule segment 2 alt_id: UBERON:0006433 def: "The S2 portion of the tubule is involved in reabsorption of water and sodium chloride[GO]." [GO:0072032] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "proximal tubule segment 2" EXACT [MA:0002613] synonym: "S2" BROAD [GO:0072032] synonym: "S2 portion of renal tubule" EXACT [] @@ -245360,6 +251037,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0004198 name: comma-shaped body def: "The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron." [GO:0072049] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "CSB" EXACT OMO:0003000 [] xref: EMAPA:27681 @@ -245372,6 +251051,8 @@ relationship: part_of UBERON:0010532 {source="cjm"} ! primitive nephron id: UBERON:0004199 name: S-shaped body def: "The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron." [GO:0072050] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "SSB" EXACT OMO:0003000 [] synonym: "stage II nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html] @@ -245390,6 +251071,8 @@ alt_id: UBERON:0002449 alt_id: UBERON:0005098 def: "Kidney pyramids are the conical arrangements of tubules that constitute the renal medulla in a multi-lobed mammalian kidney; they contain the loops of Henle and the medullary collecting ducts." [GO:0072056, http://anatomy.uams.edu/anatomyhtml/kidney.html] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "Malphigian pyramid" RELATED MISSPELLING [BTO:0003926] synonym: "Malpighian pyramid" EXACT [Wikipedia:Renal_pyramids] @@ -245429,6 +251112,8 @@ id: UBERON:0004201 name: kidney outer medulla inner stripe def: "The inner stripe is a deep, centrally located portion of the renal outer medulla and is traversed by thick and thin portions of nephron tubules." [GO:0072057] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "inner stripe" EXACT [GO:0072057] synonym: "inner stripe of medulla of kidney" EXACT [FMA:76663] @@ -245449,6 +251134,8 @@ id: UBERON:0004202 name: kidney outer medulla outer stripe def: "The outer stripe is the region of the kidney that lies distal to the line of termination of the straight renal tubules." [GO:0072058] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "outer medulla outer stripe" EXACT [MA:0002629] synonym: "outer stripe" EXACT [GO:0072058] @@ -245470,6 +251157,8 @@ name: cortical collecting duct alt_id: UBERON:0005267 def: "The cortical collecting duct is the portion of the collecting duct that resides in the renal cortex." [GO:0072059] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "kidney cortex collecting duct" EXACT [MA:0002600] synonym: "renal cortex collecting duct" RELATED [MA:0002600] xref: BTO:0002643 @@ -245489,6 +251178,8 @@ name: outer medullary collecting duct alt_id: UBERON:0005186 def: "The outer medullary collecting duct is the portion of the collecting duct that lies in the renal outer medulla." [GO:0072060] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "kidney outer medulla collecting duct" EXACT [MA:0002599] synonym: "outer renal medulla collecting duct" EXACT [MA:0002599] xref: EMAPA:28346 @@ -245505,6 +251196,8 @@ name: inner medullary collecting duct alt_id: UBERON:0005187 def: "The inner medullary collecting duct is the portion of the collecting duct that lies in the renal inner medulla." [GO:0072061] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "inner renal medulla collecting duct" EXACT [MA:0002598] synonym: "kidney inner medulla collecting duct" EXACT [MA:0002598] synonym: "papillary collecting duct" RELATED [MA:0002598] @@ -245521,6 +251214,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0004206 name: long descending thin limb bend def: "The long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment." [GO:0072065] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006555 ! excretory tube relationship: part_of UBERON:0001289 ! descending limb of loop of Henle @@ -245528,6 +251223,8 @@ relationship: part_of UBERON:0001289 ! descending limb of loop of Henle id: UBERON:0004207 name: prebend segment of loop of Henle def: "The prebend segment is a part of the descending thin limb that lies before the bend and exhibits robust sodium chloride reabsorption." [GO:0072066] +subset: human_subset +subset: mouse_subset synonym: "prebend segment" RELATED [GO:0072066] is_a: UBERON:0006555 ! excretory tube relationship: part_of UBERON:0001289 ! descending limb of loop of Henle @@ -245538,6 +251235,8 @@ id: UBERON:0004208 name: nephrogenic mesenchyme def: "Nephrogenic mesenchyme is the tissue made up of loosely connected mesenchymal cells in the nephron." [GO:0072076] comment: The detailed events associated with the differentiation of the nephrogenic mesenchyme are somewhat complex. It has been suggested that each terminal branch of the ureteric bud stimulates the associated cap mesenchyme tissue to form a renal vesicle (the most primitive stage of nephron development: a stage I nephron). This then elongates, becomes a comma-shaped and then an S-shaped body (stage II nephron), and makes contact with and fuses with the distal component of the ureteric bud. The latter then forms the collecting duct. One fold of the S-shaped body gives rise to Bowman's capsule (also termed the glomerular capsule). Soon afterwards, endothelial cells invade to make a capillary knot-like outgrowth, the glomerular tuft, which goes on to form the glomerulus. The inner epithelial layer of the Bowman's capsule (also called the visceral epithelium, or podocyte layer because it consists of podocytes) is closely apposed to the endothelial glomerulus. Together, the Bowman's capsule and the glomerulus comprise the definitive renal corpuscle. The rest of the nephron elongates to form components of the proximal tubule, the loop of Henle and the distal tubule. The distal pole of the developing nephron connects to the ureteric bud that induced it at an early stage of nephron/ collecting duct development, before differentiation of the proximal tubule, the loop of Henle and the distal tubule are complete. This connection allows the excretory products produced by the kidney to be removed and subsequently transferred, via the ureter, into the bladder where they are stored until it is appropriate to empty the bladder. [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] +subset: human_subset +subset: mouse_subset synonym: "mesenchyme of nephron" EXACT [OBOL:automatic] synonym: "nephron mesenchyme" EXACT [OBOL:automatic] is_a: UBERON:0003104 ! mesenchyme @@ -245549,6 +251248,8 @@ relationship: has_potential_to_develop_into UBERON:0001285 ! nephron id: UBERON:0004209 name: renal vesicle def: "The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells." [GO:0072077] +subset: human_subset +subset: mouse_subset synonym: "stage I nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html, ZFA:0005586] is_a: UBERON:0007503 {source="EHDAA2"} ! epithelial vesicle relationship: developmentally_induced_by UBERON:0000084 ! ureteric bud @@ -245561,6 +251262,8 @@ property_value: editor_note "note that this class includes both metanephric and id: UBERON:0004211 name: nephron epithelium def: "The nephron epithelium is a tissue that covers the surface of a nephron." [GO:0072088] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of nephron" EXACT [OBOL:automatic] synonym: "epithelium of nephron" EXACT [OBOL:automatic] synonym: "nephron epithelial tissue" EXACT [OBOL:automatic] @@ -245574,6 +251277,8 @@ id: UBERON:0004212 name: glomerular capillary def: "The small branching blood vessels in the kidney glomerulus that receives blood from the kidney afferent arterioles; these capillaries are under high pressure for filtering within the glomerulus." [MGI:csmith, MP:0011320] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "blood capillary of renal glomerulus" EXACT [OBOL:automatic] @@ -245607,6 +251312,8 @@ property_value: external_definition "Capillary that is part of the renal glomeru id: UBERON:0004214 name: upper leg nerve def: "A nerve that is part of a hindlimb stylopod [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hind limb stylopod nerve" EXACT [OBOL:automatic] synonym: "hindlimb stylopod nerve" EXACT [OBOL:automatic] synonym: "lower extremity stylopod nerve" EXACT [OBOL:automatic] @@ -245622,6 +251329,8 @@ relationship: part_of UBERON:0000376 ! hindlimb stylopod id: UBERON:0004215 name: back nerve def: "A nerve that is part of a back [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "nerve of back" EXACT [OBOL:automatic] xref: EMAPA:37268 {source="MA:th"} xref: MA:0000497 @@ -245634,6 +251343,8 @@ relationship: part_of UBERON:0001137 ! dorsum id: UBERON:0004216 name: lower arm nerve def: "A nerve that is part of a lower arm [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37338 {source="MA:th"} xref: MA:0000601 is_a: UBERON:0003433 ! arm nerve @@ -245645,6 +251356,8 @@ relationship: part_of UBERON:0002386 ! forelimb zeugopod id: UBERON:0004217 name: upper arm nerve def: "A nerve that is part of a forelimb stylopod [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37337 {source="MA:th"} xref: MA:0000607 is_a: UBERON:0003433 ! arm nerve @@ -245656,6 +251369,8 @@ relationship: part_of UBERON:0003822 ! forelimb stylopod id: UBERON:0004218 name: lower leg nerve def: "A nerve that is part of a lower leg [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37345 {source="MA:th"} xref: MA:0000679 is_a: UBERON:0003431 ! leg nerve @@ -245667,6 +251382,8 @@ relationship: part_of UBERON:0003823 ! hindlimb zeugopod id: UBERON:0004219 name: urethra smooth muscle layer def: "A portion of smooth muscle tissue that is part of a urethra [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscle layer of urethra" EXACT [FMA:76909] synonym: "muscular coat of urethra" EXACT [FMA:76909] synonym: "muscular layer of urethra" EXACT [FMA:76909] @@ -245687,6 +251404,8 @@ relationship: part_of UBERON:0000057 ! urethra id: UBERON:0004220 name: large intestine smooth muscle def: "A portion of smooth muscle tissue that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "involuntary muscle of large intestine" EXACT [OBOL:automatic] synonym: "large intestine involuntary muscle" EXACT [OBOL:automatic] synonym: "large intestine non-striated muscle" EXACT [OBOL:automatic] @@ -245708,6 +251427,8 @@ property_value: external_ontology_notes "MA class may specifically mean muscle l id: UBERON:0004221 name: intestine smooth muscle def: "A portion of smooth muscle tissue that is part of a intestine [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bowel involuntary muscle" EXACT [OBOL:automatic] synonym: "bowel non-striated muscle" EXACT [OBOL:automatic] @@ -245745,6 +251466,8 @@ property_value: external_ontology_notes "MA class may specifically mean muscle l id: UBERON:0004222 name: stomach smooth muscle def: "A portion of smooth muscle tissue that is part of a stomach [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "gastric muscle" RELATED [BTO:0001818] synonym: "gastric smooth muscle" RELATED [MA:0001627] synonym: "involuntary muscle of stomach" EXACT [OBOL:automatic] @@ -245776,6 +251499,8 @@ relationship: part_of UBERON:0001167 ! wall of stomach id: UBERON:0004223 name: vagina smooth muscle def: "A portion of smooth muscle tissue that is part of a vagina [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "involuntary muscle of vagina" EXACT [OBOL:automatic] synonym: "non-striated muscle of vagina" EXACT [OBOL:automatic] synonym: "smooth muscle of vagina" EXACT [OBOL:automatic] @@ -245797,6 +251522,8 @@ relationship: part_of UBERON:0000996 ! vagina id: UBERON:0004224 name: muscular coat of vas deferens def: "A muscular coat that is part of a vas deferens [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscle layer of deferent duct" EXACT [FMA:19239] synonym: "muscle layer of ductus deferens" EXACT [FMA:19239] synonym: "muscle layer of vas deferens" EXACT [FMA:19239] @@ -245822,6 +251549,8 @@ property_value: editor_note "TODO - check MA and FMA classes mean the same thing id: UBERON:0004225 name: respiratory system smooth muscle def: "A portion of smooth muscle tissue that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "airway smooth muscle" RELATED [BTO:0001660] synonym: "airway smooth muscle cell" RELATED [BTO:0001660] synonym: "respiratory smooth muscle" EXACT [BTO:0001660] @@ -245838,6 +251567,8 @@ relationship: part_of UBERON:0001004 ! respiratory system id: UBERON:0004226 name: gastrointestinal system smooth muscle def: "A portion of smooth muscle tissue that is part of a digestive system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "smooth muscle tissue of gastrointestinal system" EXACT [OBOL:automatic] xref: EMAPA:35117 xref: MA:0001523 @@ -245850,6 +251581,8 @@ relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal syste id: UBERON:0004227 name: kidney pelvis smooth muscle def: "The smooth muscle tissue surrounding the urothelium of the kidney pelvis." [MGI:csmith, MP:0011335] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "kidney pelvis smooth muscle" EXACT [EMAPA:28120] synonym: "pelvic smooth muscle" RELATED [EMAPA:28120] @@ -245868,6 +251601,8 @@ relationship: part_of UBERON:0001224 ! renal pelvis id: UBERON:0004228 name: urinary bladder smooth muscle def: "A portion of smooth muscle tissue that is part of a urinary bladder [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bladder involuntary muscle" EXACT [OBOL:automatic] synonym: "bladder non-striated muscle" EXACT [OBOL:automatic] synonym: "bladder smooth muscle" EXACT [OBOL:automatic] @@ -245899,6 +251634,8 @@ id: UBERON:0004229 name: urinary bladder trigone smooth muscle def: "A portion of smooth muscle tissue that is part of a trigone of urinary bladder [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "deep trigone involuntary muscle" EXACT [OBOL:automatic] synonym: "deep trigone non-striated muscle" EXACT [OBOL:automatic] synonym: "deep trigone smooth muscle" EXACT [OBOL:automatic] @@ -245959,6 +251696,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0004230 name: urinary bladder neck smooth muscle def: "A portion of smooth muscle tissue that is part of a neck of urinary bladder [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bladder neck involuntary muscle" EXACT [OBOL:automatic] synonym: "bladder neck non-striated muscle" EXACT [OBOL:automatic] synonym: "bladder neck smooth muscle" EXACT [OBOL:automatic] @@ -246015,6 +251754,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/u id: UBERON:0004231 name: anal region smooth muscle def: "A portion of smooth muscle tissue that is part of an anal region [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anal part of perineum involuntary muscle" EXACT [OBOL:automatic] synonym: "anal part of perineum non-striated muscle" EXACT [OBOL:automatic] synonym: "anal part of perineum smooth muscle" EXACT [OBOL:automatic] @@ -246049,6 +251790,8 @@ relationship: part_of UBERON:0001353 ! anal region id: UBERON:0004232 name: lymphatic vessel smooth muscle def: "A portion of smooth muscle tissue that is part of a lymphatic vessel [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "involuntary muscle of lymph vessel" EXACT [OBOL:automatic] synonym: "involuntary muscle of lymphatic vessel" EXACT [OBOL:automatic] @@ -246080,6 +251823,8 @@ relationship: part_of UBERON:0001473 ! lymphatic vessel id: UBERON:0004233 name: lower respiratory tract smooth muscle def: "A portion of smooth muscle tissue that is part of a lower respiratory tract [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "involuntary muscle of lower respiratory tract" EXACT [OBOL:automatic] synonym: "lower respiratory tract involuntary muscle" EXACT [OBOL:automatic] synonym: "lower respiratory tract non-striated muscle" EXACT [OBOL:automatic] @@ -246099,6 +251844,8 @@ relationship: part_of UBERON:0001558 ! lower respiratory tract id: UBERON:0004234 name: iris smooth muscle def: "A portion of smooth muscle tissue that is part of a iris [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "involuntary muscle of iris" EXACT [OBOL:automatic] synonym: "iridial smooth muscle" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "iris involuntary muscle" EXACT [OBOL:automatic] @@ -246122,6 +251869,8 @@ property_value: editor_note "see notes for muscle of iris." xsd:string id: UBERON:0004235 name: mammary gland smooth muscle def: "A portion of smooth muscle tissue that is part of a mammary gland [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "smooth muscle tissue of mammary gland" EXACT [OBOL:automatic] xref: EMAPA:37669 {source="MA:th"} xref: MA:0000795 @@ -246135,6 +251884,8 @@ relationship: part_of UBERON:0001911 ! mammary gland id: UBERON:0004236 name: arteriole smooth muscle def: "A portion of smooth muscle tissue that is part of an arteriole [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:36287 xref: FMA:312251 xref: MA:0000706 @@ -246150,6 +251901,8 @@ name: blood vessel smooth muscle alt_id: UBERON:0010508 def: "Smooth muscle found within, and composing the majority of the wall of blood vessels." [Wikipedia:Vascular_smooth_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "blood vessel involuntary muscle" EXACT [OBOL:automatic] synonym: "blood vessel non-striated muscle" EXACT [OBOL:automatic] @@ -246181,6 +251934,8 @@ property_value: function_notes "Vascular smooth muscle contracts or relaxes to b id: UBERON:0004238 name: spleen smooth muscle def: "A portion of smooth muscle tissue that is part of a spleen [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "involuntary muscle of spleen" EXACT [OBOL:automatic] synonym: "non-striated muscle of spleen" EXACT [OBOL:automatic] synonym: "smooth muscle of spleen" EXACT [OBOL:automatic] @@ -246199,6 +251954,8 @@ relationship: part_of UBERON:0002106 ! spleen id: UBERON:0004239 name: small intestine smooth muscle def: "A portion of smooth muscle tissue that is part of a small intestine [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "involuntary muscle of small bowel" EXACT [OBOL:automatic] synonym: "involuntary muscle of small intestine" EXACT [OBOL:automatic] @@ -246229,6 +251986,8 @@ property_value: external_ontology_notes "MA class may specifically mean muscle l id: UBERON:0004240 name: gallbladder smooth muscle def: "A portion of smooth muscle tissue that is part of a gallbladder [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "biliary smooth muscle" RELATED [MA:0001635] synonym: "gall bladder involuntary muscle" EXACT [OBOL:automatic] synonym: "gall bladder non-striated muscle" EXACT [OBOL:automatic] @@ -246260,6 +252019,8 @@ id: UBERON:0004241 name: main bronchus smooth muscle def: "A portion of smooth muscle tissue that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "bronchus principalis involuntary muscle" EXACT [OBOL:automatic] synonym: "bronchus principalis non-striated muscle" EXACT [OBOL:automatic] synonym: "bronchus principalis smooth muscle" EXACT [OBOL:automatic] @@ -246304,6 +252065,8 @@ id: UBERON:0004242 name: bronchus smooth muscle def: "A portion of smooth muscle tissue that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "bronchi involuntary muscle" EXACT [OBOL:automatic] synonym: "bronchi non-striated muscle" EXACT [OBOL:automatic] synonym: "bronchi smooth muscle" EXACT [OBOL:automatic] @@ -246346,6 +252109,8 @@ id: UBERON:0004243 name: prostate gland smooth muscle def: "A portion of smooth muscle tissue that is part of a prostate gland [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "involuntary muscle of prostate" EXACT [OBOL:automatic] synonym: "involuntary muscle of prostate gland" EXACT [OBOL:automatic] synonym: "muscular tissue of prostate" EXACT [FMA:74245] @@ -246379,6 +252144,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0004245 name: oviduct smooth muscle def: "A portion of smooth muscle tissue that is part of a fallopian tube [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fallopian tube involuntary muscle" EXACT [OBOL:automatic] synonym: "fallopian tube non-striated muscle" EXACT [OBOL:automatic] synonym: "fallopian tube smooth muscle" EXACT [OBOL:automatic] @@ -246398,6 +252165,8 @@ relationship: part_of UBERON:0003889 ! fallopian tube id: UBERON:0004246 name: outflow tract smooth muscle def: "A portion of smooth muscle tissue that is part of a outflow tract [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "involuntary muscle of outflow tract" EXACT [OBOL:automatic] synonym: "non-striated muscle of outflow tract" EXACT [OBOL:automatic] synonym: "outflow tract involuntary muscle" EXACT [OBOL:automatic] @@ -246417,6 +252186,8 @@ id: UBERON:0004247 name: bone of dorsum def: "A bone that is part of the dorsal region of an animal." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "back bone" RELATED [MA:0000494] synonym: "bone of back" RELATED [OBOL:automatic] synonym: "dorsal region bone" RELATED [http://orcid.org/0000-0002-6601-2165] @@ -246434,6 +252205,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0004248 name: pedal digit bone def: "A bone that is part of a hindlimb digit. Typically phalanges but may include sesamoids." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "bone of digit of foot" EXACT [OBOL:automatic] synonym: "digit of foot bone" EXACT [OBOL:automatic] synonym: "digital bone of foot" EXACT [] @@ -246459,6 +252232,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0004249 name: manual digit bone def: "A bone that is part of a forelimb digit. Typically phalanges but may include sesamoids." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digital bone of hand" EXACT [] synonym: "digital bone of manus" EXACT [] synonym: "finger bone" EXACT [OBOL:automatic] @@ -246479,6 +252254,8 @@ id: UBERON:0004250 name: upper arm bone def: "A bone that is part of a forelimb stylopod [Automatically generated definition]." [https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376, OBOL:automatic] comment: May be merged into humerus. See: https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376 +subset: human_subset +subset: mouse_subset synonym: "humerus" NARROW [https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376] xref: EMAPA:35892 xref: MA:0000604 @@ -246492,6 +252269,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0004251 name: hindlimb zeugopod bone def: "A bone that is part of a lower leg [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bone of hind limb middle limb segment" EXACT [OBOL:automatic] synonym: "bone of hind limb zeugopod" EXACT [OBOL:automatic] synonym: "bone of hindlimb middle limb segment" EXACT [OBOL:automatic] @@ -246580,6 +252359,8 @@ id: UBERON:0004252 name: hindlimb stylopod muscle alt_id: UBERON:0000374 def: "Any muscle organ that is part of a hindlimb stylopod (upper leg)[Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "muscle of thigh" EXACT [FMA:22470] synonym: "thigh muscle" EXACT [FMA:22470] @@ -246600,6 +252381,8 @@ id: UBERON:0004253 name: skin muscle alt_id: UBERON:0015797 def: "Any muscle organ that is part of a skin of body [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "integumental system muscle" EXACT [MA:0003139] synonym: "muscle of integumental system" EXACT [EMAPA:18187] synonym: "muscle organ of skin" EXACT [OBOL:automatic] @@ -246620,6 +252403,8 @@ property_value: external_ontology_notes "in MA, the only skin muscle is arrector id: UBERON:0004254 name: forelimb zeugopod muscle def: "Any muscle organ that is part of a forelimb zeugopod (lower arm)[Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "forearm muscle" EXACT [FMA:37371] synonym: "lower arm muscle" EXACT [MA:0000600] synonym: "muscle of forearm" EXACT [FMA:37371] @@ -246638,6 +252423,8 @@ relationship: part_of UBERON:0004487 {source="prolog"} ! musculature of forelimb id: UBERON:0004255 name: forelimb stylopod muscle def: "Any muscle organ that is part of a forelimb stylopod (upper arm)[Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "muscle of arm" RELATED INCONSISTENT [FMA:37370] synonym: "muscle of upper arm" EXACT [MA:0000606] @@ -246661,6 +252448,8 @@ id: UBERON:0004256 name: hindlimb zeugopod muscle def: "Any muscle organ that is part of a hindlimb zeugopod (lower leg) [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "calf muscle" RELATED [OBOL:automatic] synonym: "lower leg muscle" EXACT [MA:0000678] @@ -246682,6 +252471,8 @@ property_value: terminology_notes "See notes on UBERON:0000978 for possible term id: UBERON:0004257 name: upper leg blood vessel def: "A blood vessel that is part of a hindlimb stylopod [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of stylopod of hind limb" EXACT [OBOL:automatic] synonym: "blood vessel of stylopod of hindlimb" EXACT [OBOL:automatic] synonym: "blood vessel of thigh" EXACT [OBOL:automatic] @@ -246700,6 +252491,8 @@ relationship: part_of UBERON:0000376 ! hindlimb stylopod id: UBERON:0004258 name: back blood vessel def: "A blood vessel that is part of a back [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel of back" EXACT [OBOL:automatic] xref: EMAPA:37243 {source="MA:th"} xref: MA:0000493 @@ -246712,6 +252505,8 @@ relationship: part_of UBERON:0001137 ! dorsum id: UBERON:0004259 name: lower arm blood vessel def: "A blood vessel that is part of a lower arm [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "forelimb zeugopod blood vessel" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:37295 {source="MA:th"} xref: MA:0000597 @@ -246724,6 +252519,8 @@ relationship: part_of UBERON:0002386 ! forelimb zeugopod id: UBERON:0004260 name: upper arm blood vessel def: "A blood vessel that is part of a forelimb stylopod [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "forelimb stylopod blood vessel" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:37294 {source="MA:th"} xref: MA:0000603 @@ -246736,6 +252533,8 @@ relationship: part_of UBERON:0003822 ! forelimb stylopod id: UBERON:0004261 name: lower leg blood vessel def: "A blood vessel that is part of a lower leg [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hindlimb zeugopod blood vessel" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:37300 {source="MA:th"} xref: MA:0000675 @@ -246748,6 +252547,8 @@ relationship: part_of UBERON:0003823 ! hindlimb zeugopod id: UBERON:0004262 name: upper leg skin def: "A zone of skin that is part of a hindlimb stylopod [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hind limb stylopod skin" EXACT [OBOL:automatic] synonym: "hindlimb stylopod skin" EXACT [OBOL:automatic] synonym: "skin of thigh" RELATED [OBOL:automatic] @@ -246766,6 +252567,8 @@ relationship: part_of UBERON:0000376 ! hindlimb stylopod id: UBERON:0004263 name: upper arm skin def: "A zone of skin that is part of a forelimb stylopod [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arm stylopod skin" EXACT [OBOL:automatic] synonym: "skin of arm stylopod" EXACT [OBOL:automatic] synonym: "skin of upper arm" EXACT [OBOL:automatic] @@ -246782,6 +252585,8 @@ relationship: part_of UBERON:0003822 ! forelimb stylopod id: UBERON:0004264 name: lower leg skin def: "A zone of skin that is part of a lower leg [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hind limb middle limb segment skin" EXACT [OBOL:automatic] synonym: "hind limb zeugopod skin" EXACT [OBOL:automatic] synonym: "hindlimb zeugopod skin" EXACT [https://orcid.org/0000-0002-0819-0473] @@ -246797,6 +252602,8 @@ relationship: part_of UBERON:0003823 ! hindlimb zeugopod id: UBERON:0004265 name: outflow tract myocardium def: "A myocardium that is part of a outflow tract [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cardiac muscle of outflow tract" EXACT [OBOL:automatic] synonym: "heart muscle of outflow tract" EXACT [OBOL:automatic] synonym: "heart myocardium of outflow tract" EXACT [OBOL:automatic] @@ -246820,6 +252627,8 @@ property_value: homology_notes "(...) (theme) is how the vertebrate cardiovascul id: UBERON:0004266 name: upper leg connective tissue def: "A portion of connective tissue that is part of a hindlimb stylopod [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37325 {source="MA:th"} xref: MA:0000683 is_a: UBERON:0003569 ! leg connective tissue @@ -246833,6 +252642,8 @@ relationship: transformation_of UBERON:0005254 ! upper leg mesenchyme id: UBERON:0004267 name: back connective tissue def: "A portion of connective tissue that is part of a back [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesenchyne of back" RELATED [OBOL:automatic] xref: EMAPA:37256 {source="MA:th"} xref: MA:0000495 @@ -246845,6 +252656,8 @@ relationship: part_of UBERON:0001137 ! dorsum id: UBERON:0004268 name: lower arm connective tissue def: "A portion of connective tissue that is part of a lower arm [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37319 {source="MA:th"} xref: MA:0000599 is_a: UBERON:0003573 ! arm connective tissue @@ -246858,6 +252671,8 @@ relationship: transformation_of UBERON:0003327 ! mesenchyme of forearm id: UBERON:0004269 name: upper arm connective tissue def: "A portion of connective tissue that is part of a forelimb stylopod [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37317 {source="MA:th"} xref: MA:0000605 is_a: UBERON:0003573 ! arm connective tissue @@ -246871,6 +252686,8 @@ relationship: transformation_of UBERON:0005258 ! upper arm mesenchyme id: UBERON:0004270 name: lower leg connective tissue def: "A portion of connective tissue that is part of a lower leg [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37327 {source="MA:th"} xref: MA:0000677 is_a: UBERON:0003569 ! leg connective tissue @@ -246884,6 +252701,8 @@ relationship: transformation_of UBERON:0005259 ! lower leg mesenchyme id: UBERON:0004271 name: outflow tract pericardium def: "A pericardium that is part of a outflow tract [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pericardium of outflow tract" EXACT [OBOL:automatic] xref: EMAPA:37707 {source="MA:th"} xref: MA:0000491 @@ -246897,6 +252716,8 @@ relationship: part_of UBERON:0004145 ! outflow tract id: UBERON:0004273 name: cartilaginous joint suture def: "A cranial suture that is part of a cartilaginous joint [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "articulatio cartilaginea cranial suture" EXACT [OBOL:automatic] synonym: "articulatio cartilaginea cranial sutures" EXACT [OBOL:automatic] synonym: "articulatio cartilaginea cranial sutures set" EXACT [OBOL:automatic] @@ -246928,6 +252749,8 @@ relationship: part_of UBERON:0002213 ! cartilaginous joint id: UBERON:0004274 name: lateral ventricle choroid plexus epithelium def: "A choroid plexus epithelium that is part of a lateral ventricle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of lateral ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelium of lateral ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelial tissue of lateral ventricle" EXACT [OBOL:automatic] @@ -246957,6 +252780,8 @@ relationship: part_of UBERON:0002307 ! choroid plexus of lateral ventricle id: UBERON:0004275 name: third ventricle choroid plexus epithelium def: "A choroid plexus epithelium that is part of a third ventricle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of third ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelium of third ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelial tissue of third ventricle" EXACT [OBOL:automatic] @@ -246985,6 +252810,8 @@ relationship: part_of UBERON:0002288 ! choroid plexus of third ventricle id: UBERON:0004276 name: fourth ventricle choroid plexus epithelium def: "A choroid plexus epithelium that is part of a fourth ventricle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of fourth ventricle" EXACT [OBOL:automatic] synonym: "chorioid plexus of cerebral hemisphere epithelium of fourth ventricle" EXACT [OBOL:automatic] synonym: "choroid plexus epithelial tissue of fourth ventricle" EXACT [OBOL:automatic] @@ -247014,6 +252841,8 @@ relationship: part_of UBERON:0002422 ! fourth ventricle id: UBERON:0004277 name: eye muscle def: "A muscle that is part of the eye region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: AAO:0000156 xref: EMAPA:35335 @@ -247031,6 +252860,8 @@ name: skeleton def: "Anatomical cluster that consists of all the skeletal elements (eg., bone, cartilage, and teeth) of the body." [VSAO:0000026] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "set of all bones" EXACT [] @@ -247075,6 +252906,8 @@ relationship: in_taxon NCBITaxon:6447 ! Mollusca id: UBERON:0004290 name: dermomyotome def: "The bilaminar epithelium formed from the myotome and dermatome." [AEO:0000214] +subset: human_subset +subset: mouse_subset synonym: "dermamyotome" RELATED [VHOG:0000676] synonym: "dermomyotomes" RELATED OMO:0003004 [VHOG:0000676] xref: AAO:0010572 @@ -247101,6 +252934,8 @@ property_value: homology_notes "Thus, representatives of the agnathan vertebrate id: UBERON:0004291 name: heart rudiment def: "A cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube." [GO:0003313] +subset: human_subset +subset: mouse_subset synonym: "heart cone" EXACT [GO:0003313] synonym: "rudimentary heart" EXACT [ZFA:0000115] xref: TAO:0000115 @@ -247114,6 +252949,8 @@ property_value: external_definition "The migrating myocardial precursors of the id: UBERON:0004292 name: cardiac skeleton def: "Dense connective tissue that separates the atria from the ventricles and provides physical support for the heart." [GO:0003204, Wikipedia:Cardiac_skeleton] +subset: human_subset +subset: mouse_subset synonym: "anulus fibrosus dexter cordis" RELATED OMO:0003011 [Wikipedia:Cardiac_skeleton] synonym: "anulus fibrosus sinister cordis" RELATED OMO:0003011 [Wikipedia:Cardiac_skeleton] synonym: "cardiac fibrous skeleton" EXACT [EMAPA:36645] @@ -247139,6 +252976,8 @@ id: UBERON:0004293 name: parasympathetic nerve def: "A nerve that is part of a parasympathetic nervous system [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "nerve of parasympathetic nervous system" EXACT [OBOL:automatic] xref: EHDAA2:0001401 xref: EMAPA:17271 @@ -247160,6 +252999,8 @@ id: UBERON:0004294 name: glomerular capillary endothelium def: "An endothelium that is part of a glomerular capillary." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "renal glomerulus capillary endothelium" EXACT [OBOL:automatic] xref: MA:0001658 @@ -247178,6 +253019,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0004295 name: sympathetic nerve trunk def: "A nerve trunk that is part of a sympathetic nervous system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "nerve trunk of sympathetic nervous system" EXACT [OBOL:automatic] synonym: "nerve trunk of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic] @@ -247194,6 +253037,8 @@ relationship: part_of UBERON:0000013 ! sympathetic nervous system id: UBERON:0004296 name: respiratory system lymphatic vessel smooth muscle def: "A lymphatic vessel smooth muscle that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "smooth muscle of lymph vessel of respiratory system" EXACT [OBOL:automatic] xref: EMAPA:37582 {source="MA:th"} xref: MA:0001826 @@ -247207,6 +253052,8 @@ relationship: part_of UBERON:0003456 ! respiratory system lymphatic vessel id: UBERON:0004297 name: respiratory system blood vessel smooth muscle def: "A blood vessel smooth muscle that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "smooth muscle tissue of blood vessel of respiratory system" EXACT [OBOL:automatic] xref: EMAPA:37573 {source="MA:th"} xref: MA:0001806 @@ -247220,6 +253067,8 @@ relationship: part_of UBERON:0003504 ! respiratory system blood vessel id: UBERON:0004300 name: distal phalanx def: "Distal-most phalanx within a digit." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/120] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "phalanx distalis" EXACT [Wikipedia:Distal_phalanges] synonym: "phalanx distalis" RELATED OMO:0003011 [Wikipedia:Distal_phalanges] @@ -247244,6 +253093,8 @@ property_value: taxon_notes "In human anatomy, the distal phalanges of the four id: UBERON:0004301 name: middle phalanx def: "A phalanx located between proximal and distal phalanges." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "intermediate phalanx" EXACT [] synonym: "medial phalanx" RELATED [] synonym: "penultimate phalanx" RELATED [AAO:0010677] @@ -247272,6 +253123,8 @@ property_value: taxon_notes "Intermediate phalanges are bones found in the limbs id: UBERON:0004302 name: proximal phalanx def: "Proximal-most phalanx within a digit." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "phalanx 1" EXACT [] synonym: "phalanx I" EXACT [] synonym: "proximal-most phalanx" EXACT [AAO:0010680] @@ -247292,6 +253145,8 @@ id: UBERON:0004311 name: distal phalanx of manual digit 2 def: "A distal phalanx that is part of a hand digit 2 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "2nd digit of hand distal phalanx" EXACT [OBOL:automatic] synonym: "2nd finger distal phalanx" EXACT [OBOL:automatic] @@ -247321,6 +253176,8 @@ id: UBERON:0004312 name: distal phalanx of manual digit 3 def: "A distal phalanx that is part of a hand digit 3 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "3rd digit of hand distal phalanx" EXACT [OBOL:automatic] synonym: "3rd finger distal phalanx" EXACT [OBOL:automatic] @@ -247358,6 +253215,8 @@ id: UBERON:0004313 name: distal phalanx of manual digit 4 def: "A distal phalanx that is part of a hand digit 4 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "4th digit of hand distal phalanx" EXACT [OBOL:automatic] synonym: "4th finger distal phalanx" EXACT [OBOL:automatic] @@ -247387,6 +253246,8 @@ id: UBERON:0004314 name: distal phalanx of manual digit 5 def: "A distal phalanx that is part of a hand digit 5 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "5th digit of hand distal phalanx" EXACT [OBOL:automatic] synonym: "5th finger distal phalanx" EXACT [OBOL:automatic] @@ -247416,6 +253277,8 @@ id: UBERON:0004315 name: distal phalanx of pedal digit 1 def: "A distal phalanx that is part of a foot digit 1 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal phalanx of big toe" EXACT [FMA:32627] synonym: "distal phalanx of first digit of foot" EXACT [FMA:32627] @@ -247443,6 +253306,8 @@ id: UBERON:0004316 name: distal phalanx of pedal digit 2 def: "A distal phalanx that is part of a foot digit 2 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "2nd toe distal phalanx" EXACT [OBOL:automatic] synonym: "distal phalanx of 2nd toe" EXACT [OBOL:automatic] @@ -247470,6 +253335,8 @@ id: UBERON:0004317 name: distal phalanx of pedal digit 3 def: "A distal phalanx that is part of a foot digit 3 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "3rd toe distal phalanx" EXACT [OBOL:automatic] synonym: "distal phalanx of 3rd toe" EXACT [OBOL:automatic] @@ -247505,6 +253372,8 @@ id: UBERON:0004318 name: distal phalanx of pedal digit 4 def: "A distal phalanx that is part of a foot digit 4 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "4th toe distal phalanx" EXACT [OBOL:automatic] synonym: "distal phalanx of 4th toe" EXACT [OBOL:automatic] @@ -247532,6 +253401,8 @@ id: UBERON:0004319 name: distal phalanx of pedal digit 5 def: "A distal phalanx that is part of a foot digit 5 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "5th toe distal phalanx" EXACT [OBOL:automatic] synonym: "distal phalanx of 5th toe" EXACT [OBOL:automatic] @@ -247561,6 +253432,8 @@ id: UBERON:0004320 name: middle phalanx of manual digit 2 def: "A middle phalanx that is part of a hand digit 2 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "2nd digit of hand intermediate phalanx" EXACT [OBOL:automatic] synonym: "2nd digit of hand middle phalanx" EXACT [OBOL:automatic] @@ -247599,6 +253472,8 @@ id: UBERON:0004321 name: middle phalanx of manual digit 3 def: "A middle phalanx that is part of a hand digit 3 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "3rd digit of hand intermediate phalanx" EXACT [OBOL:automatic] synonym: "3rd digit of hand middle phalanx" EXACT [OBOL:automatic] @@ -247640,6 +253515,8 @@ id: UBERON:0004322 name: middle phalanx of manual digit 4 def: "A middle phalanx that is part of a hand digit 4 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "4th digit of hand intermediate phalanx" EXACT [OBOL:automatic] synonym: "4th digit of hand middle phalanx" EXACT [OBOL:automatic] @@ -247678,6 +253555,8 @@ id: UBERON:0004323 name: middle phalanx of manual digit 5 def: "A middle phalanx that is part of a hand digit 5 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "5th digit of hand intermediate phalanx" EXACT [OBOL:automatic] synonym: "5th digit of hand middle phalanx" EXACT [OBOL:automatic] @@ -247716,6 +253595,8 @@ id: UBERON:0004324 name: middle phalanx of pedal digit 2 def: "A middle phalanx that is part of a foot digit 2 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "2nd toe intermediate phalanx" EXACT [OBOL:automatic] synonym: "2nd toe middle phalanx" EXACT [OBOL:automatic] @@ -247748,6 +253629,8 @@ id: UBERON:0004325 name: middle phalanx of pedal digit 3 def: "A middle phalanx that is part of a foot digit 3 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "3rd toe intermediate phalanx" EXACT [OBOL:automatic] synonym: "3rd toe middle phalanx" EXACT [OBOL:automatic] @@ -247783,6 +253666,8 @@ id: UBERON:0004326 name: middle phalanx of pedal digit 4 def: "A middle phalanx that is part of a pedal digit 4 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "4th toe intermediate phalanx" EXACT [OBOL:automatic] synonym: "4th toe middle phalanx" EXACT [OBOL:automatic] @@ -247815,6 +253700,8 @@ id: UBERON:0004327 name: middle phalanx of pedal digit 5 def: "A middle phalanx that is part of a pedal digit 5 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "5th toe intermediate phalanx" EXACT [OBOL:automatic] synonym: "5th toe middle phalanx" EXACT [OBOL:automatic] @@ -247846,6 +253733,8 @@ id: UBERON:0004328 name: proximal phalanx of manual digit 2 def: "A proximal phalanx that is part of a hand digit 2 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "2nd digit of hand proximal phalanx" EXACT [OBOL:automatic] synonym: "2nd finger proximal phalanx" EXACT [OBOL:automatic] @@ -247877,6 +253766,8 @@ id: UBERON:0004329 name: proximal phalanx of manual digit 3 def: "A proximal phalanx that is part of a hand digit 3 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "3rd digit of hand proximal phalanx" EXACT [OBOL:automatic] synonym: "3rd finger proximal phalanx" EXACT [OBOL:automatic] @@ -247909,6 +253800,8 @@ id: UBERON:0004330 name: proximal phalanx of manual digit 4 def: "A proximal phalanx that is part of a hand digit 4 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "4th digit of hand proximal phalanx" EXACT [OBOL:automatic] synonym: "4th finger proximal phalanx" EXACT [OBOL:automatic] @@ -247940,6 +253833,8 @@ id: UBERON:0004331 name: proximal phalanx of manual digit 5 def: "A proximal phalanx that is part of a hand digit 5 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "5th digit of hand proximal phalanx" EXACT [OBOL:automatic] synonym: "5th finger proximal phalanx" EXACT [OBOL:automatic] @@ -247971,6 +253866,8 @@ id: UBERON:0004332 name: proximal phalanx of pedal digit 1 def: "A proximal phalanx that is part of a pedal digit 1 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "foot digit 1 proximal phalanx" EXACT [OBOL:automatic] synonym: "hallux proximal phalanx" EXACT [OBOL:automatic] @@ -247999,6 +253896,8 @@ id: UBERON:0004333 name: proximal phalanx of pedal digit 2 def: "A proximal phalanx that is part of a pedal digit 2 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "2nd toe proximal phalanx" EXACT [OBOL:automatic] synonym: "foot digit 2 proximal phalanx" EXACT [OBOL:automatic] @@ -248028,6 +253927,8 @@ id: UBERON:0004334 name: proximal phalanx of pedal digit 3 def: "A proximal phalanx that is part of a pedal digit 3 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "3rd toe proximal phalanx" EXACT [OBOL:automatic] synonym: "foot digit 3 proximal phalanx" EXACT [OBOL:automatic] @@ -248058,6 +253959,8 @@ id: UBERON:0004335 name: proximal phalanx of pedal digit 4 def: "A proximal phalanx that is part of a pedal digit 4 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "4th toe proximal phalanx" EXACT [OBOL:automatic] synonym: "foot digit 4 proximal phalanx" EXACT [OBOL:automatic] @@ -248087,6 +253990,8 @@ id: UBERON:0004336 name: proximal phalanx of pedal digit 5 def: "A proximal phalanx that is part of a pedal digit 5 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "5th toe proximal phalanx" EXACT [OBOL:automatic] synonym: "fifth proximal phalanx of foot" EXACT [FMA:32621] @@ -248118,6 +254023,8 @@ id: UBERON:0004337 name: distal phalanx of manual digit 1 def: "A distal phalanx that is part of a hand digit 1 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal phalanx of first digit of hand" EXACT [FMA:23945] synonym: "distal phalanx of manual digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -248145,6 +254052,8 @@ id: UBERON:0004338 name: proximal phalanx of manual digit 1 def: "A proximal phalanx that is part of a hand digit 1 [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "first proximal phalanx of hand" EXACT [FMA:23918] synonym: "manual digit 1 proximal phalanx" EXACT [PHENOSCAPE:wd] @@ -248170,6 +254079,8 @@ id: UBERON:0004339 name: vault of skull def: "Upper part of skull, consisting of parietals, frontals, post-parietals, and in some species the squamosal and a portion of the alisphenoid." [MP:0000076, PMID:11523816, Wikipedia:Calvaria_(skull)] comment: Terminology notes. we include calvarium as a synonym, but Gray's Anatomy's list includes the Ethmoid and Sphenoid bone in the Calvaria. Some books (and HPO) state that calvaria consists of just the frontal bone, parietal bone, temporal bone, and occipital bone. Note vault may not be precisely equivalent to calvaria +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "calva" EXACT [FMA:52800] synonym: "calvaria" RELATED OMO:0003004 [ZFA:0005606] @@ -248199,6 +254110,8 @@ property_value: homology_notes "The earliest tetrapods arose from rhipidistian a id: UBERON:0004340 name: allantois def: "A membranous sac that develops from the posterior part of the alimentary canal in the embryos of mammals, birds, and reptiles, and it is important in the formation of the umbilical cord and placenta in mammals[VHOG]." [VHOG:0000738, Wikipedia:Allantois] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "allantoic bud" RELATED [EMAPA:16107] xref: BTO:0000474 @@ -248230,6 +254143,8 @@ id: UBERON:0004341 name: primitive streak def: "The primitive streak is a structure that forms during the early stages of avian, reptilian and mammalian embryonic development[WP]. the midline ridge of the embryonic epiblast that later develops into mesoderm and endoderm[MP]." [MP:0002231, Wikipedia:Primitive_streak] subset: early_development +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "primitive streak - blastopore - germ ring" EXACT [VHOG:0001202] xref: EHDAA2:0001525 @@ -248257,6 +254172,8 @@ property_value: homology_notes "(...) the blastopore equivalent of chordates (ge id: UBERON:0004344 name: cardinal vein def: "Any of the four veins in the developing vertebrate embryo which run along each side of the vertebral column." [MP:0004783] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cardinal sinus" RELATED [BTO:0004385] synonym: "cardinal vein system" RELATED [EHDAA2:0000213] @@ -248281,6 +254198,8 @@ id: UBERON:0004345 name: trophectoderm def: "Outermost layer of cells in the blastodermic vesicle, which will develop into the trophoblast layer and then contact the endometrium and take part in establishing the embryo's means of nutrition." [MP:0005028] subset: early_development +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: BTO:0001840 xref: EHDAA2:0002091 @@ -248303,6 +254222,8 @@ id: UBERON:0004346 name: gubernaculum (male or female) alt_id: UBERON:0000452 def: "Embryonic structures which begin as undifferentiated mesenchyme attaching to the caudal end of the gonads. The gubernaculum is present only during the development of the urinary and reproductive organs, being replaced by distinct vestiges in males and females[WP]. Enitoinguinal ligaments that, in the male, connect the fetal testis to the developing scrotum, and, in the female, connect the ovaries to the uterus[MP]." [MP:0005149, Wikipedia:Gubernaculum] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "caudal suspensory ligament" RELATED [EMAPA:19089] synonym: "Gabernaculum" RELATED OMO:0003011 [Wikipedia:Gubernaculum] @@ -248331,6 +254252,8 @@ id: UBERON:0004347 name: limb bud def: "An outgrowth on the lateral trunk of the embryo that develops into a limb. The limb bud is divided into ectoderm and mesenchyme[cjm, modified from MP]." [https://orcid.org/0000-0002-6601-2165, ISBN:9780878932504, MP:0005650, Wikipedia:Limb_bud] comment: developmentally_induced_by Fgf10, capable of initiating limb forming interactions between endoderm and mesoderm +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "gemmae membrorum" RELATED OMO:0003011 [Wikipedia:Limb_bud] synonym: "limb buds" EXACT OMO:0003004 [] @@ -248356,6 +254279,8 @@ property_value: external_definition "Early outgrowth of presumptive limb.[AAO]" id: UBERON:0004348 name: optic eminence def: "The embryonic structure that gives rise to the corneal ectoderm." [MP:0006305] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EHDAA:938 xref: EMAPA:16322 @@ -248368,6 +254293,8 @@ relationship: has_potential_to_develop_into UBERON:0000964 ! cornea id: UBERON:0004353 name: female inguinal canal def: "An inguinal canal that is part of a female organism. Conveys the round ligament + the ilioinguinal nerve.[WP,unvetted]." [MP:0008015, Wikipedia:Inguinal_canal#Contents] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "inguinal canal of female" EXACT [] xref: EMAPA:19171 @@ -248386,6 +254313,8 @@ property_value: external_ontology_notes "in MP, this is implicitly part of femal id: UBERON:0004354 name: male inguinal canal def: "An inguinal canal that is part of a male organism. Conveys the spermatic cord and its coverings + the ilioinguinal nerve.[WP,unvetted]." [MP:0008016, Wikipedia:Inguinal_canal#Contents] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "inguinal canal of male" EXACT [] xref: EMAPA:26913 @@ -248411,6 +254340,8 @@ replaced_by: GO:0098846 id: UBERON:0004356 name: apical ectodermal ridge def: "Multilayered ectodermal region at the distal tip of a limb or fin bud necessary for the proper development of the underlying mesenchyme[MP,modified]. Along with the zone of polarizing activity, it is a crucial organizing region during limb development[WP]." [MP:0001676, Wikipedia:Apical_ectodermal_ridge] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "AER" RELATED [MP:0001676] synonym: "apical epidermal ridge" EXACT [XAO:0004121] @@ -248444,6 +254375,8 @@ name: paired limb/fin bud def: "An outgrowth on the lateral trunk of the embryo that develops into a limb or paired fin. The limb/fin bud is divided into ectoderm and mesenchyme[cjm, modified from MP]." [https://orcid.org/0000-0002-6601-2165, ISBN:9780878932504, MP:0005650] comment: Genes: In limb buds of chick and mouse, Shh expression is activated as soon as there is a morphological bud, whereas in S. canicula fin buds, consistent with reported data in other cartilaginous fishes, Shh is transcribed late in fin development[PMID:17187056] subset: homology_grouping +subset: human_subset +subset: mouse_subset synonym: "limb - fin bud" EXACT [VHOG:0001258] synonym: "paired appendage bud" EXACT [] synonym: "paired limb/fin bud" EXACT [VHOG:0001258] @@ -248460,6 +254393,8 @@ property_value: homology_notes "The tetrapod limb is derived from a posterior pa id: UBERON:0004358 name: caput epididymis def: "The head of the epididymis." [MP:0002660] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "caput" BROAD [MP:0002660] synonym: "caput epididymidis" RELATED [BTO:0000336] @@ -248485,6 +254420,8 @@ property_value: structure_notes "The head of the epididymis receives spermatozoa id: UBERON:0004359 name: corpus epididymis def: "The body of the epididymis." [MP:0002661] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "body of epididymis" EXACT [FMA:18260] synonym: "body of epidymis" EXACT [] @@ -248508,6 +254445,8 @@ relationship: part_of UBERON:0001301 ! epididymis id: UBERON:0004360 name: cauda epididymis def: "The tail of the epididymis." [MP:0002662] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cauda epididymidis" EXACT [BTO:0000210] synonym: "corpus" BROAD [MP:0002662] @@ -248534,6 +254473,8 @@ property_value: structure_notes "This has a thicker myoepithelium than the head id: UBERON:0004361 name: stylohyoid ligament def: "The fibrous cord that connects the tip of the styloid process of the temporal bone to the lesser horn of the hyoid bone." [MP:0009918, Wikipedia:Stylohyoid_ligament] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ligamentum stylohyoideum" EXACT [Wikipedia:Stylohyoid_ligament] synonym: "ligamentum stylohyoideus" EXACT [Wikipedia:Stylohyoid_ligament] @@ -248553,6 +254494,8 @@ relationship: develops_from UBERON:0004368 {source="MP-implied-by-def"} ! Reiche id: UBERON:0004362 name: pharyngeal arch 1 def: "The first of the series of pharyngeal arches that develop into jaw bones or their homologs, and their associated nerves and arteries." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -248594,6 +254537,8 @@ name: pharyngeal arch artery alt_id: UBERON:0004342 def: "One of a series of paired embryological vascular structures formed within a pharyngeal arch; in the adult, some of these vessels give rise to the great vessels[MP]." [MP:0002672] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -248625,7 +254570,6 @@ xref: XAO:0000341 xref: ZFA:0005004 is_a: UBERON:0001637 {source="ZFA"} ! artery is_a: UBERON:0003469 ! respiratory system artery -is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0002539 ! pharyngeal arch @@ -248646,6 +254590,8 @@ property_value: taxon_notes "Number varies - Lampreys have 8, hagfishes 15; only id: UBERON:0004364 name: ectoplacental cone def: "Thickened trophoblast of the blastocyst in rodents that becomes the fetal portion of the placenta." [MP:0001717, PMID:19829370] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epamniotic cone" EXACT [] synonym: "placenta - ectoplacental cone" EXACT [] @@ -248660,6 +254606,8 @@ property_value: development_notes "derivative of the early postimplantation trop id: UBERON:0004365 name: vitelline blood vessel def: "Blood vessel that is connected to the yolk sac." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:36494 is_a: UBERON:0001981 ! blood vessel @@ -248672,6 +254620,8 @@ relationship: part_of UBERON:0004374 ! vitelline vasculature id: UBERON:0004366 name: extraembryonic ectoderm def: "Layer of the endoderm of the extraembryonic tissue." [MP:0002583] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:16065 is_a: UBERON:0000478 ! extraembryonic structure @@ -248683,6 +254633,8 @@ id: UBERON:0004367 name: Descemet's membrane def: "A transparent homogeneous acellular layer found between the substantia propria and the endothelial layer of the cornea[MP]." [https://github.com/obophenotype/uberon/issues/15, MP:0004285] comment: The strong, resistant, thin, noncellular fourth layer of the cornea, located between the endothelium (from which it is secreted) and the stroma. (Cline et al., Dictionary of Visual Science, 4th ed) +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "Descemet membrane" EXACT [] @@ -248724,6 +254676,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/15" xsd:a id: UBERON:0004368 name: Reichert's cartilage def: "A continuous cartilaginous formation in mesenchyme of the second pharyngeal arch in the embryo. The longer cranial or styloid segment is continuous with the otic capsule; its inferior end is angulated and is situated very close to the oropharynx. The smaller caudal segment is in contact with the body and greater horn of the hyoid cartilaginous structure." [DOI:10.1111/j.1469-7580.2006.00524.x, MP:0004916] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hyaloid cartilage" EXACT [MP:0004916] synonym: "hyoid cartilage" EXACT [EHDAA2:0000793] @@ -248747,6 +254701,8 @@ property_value: external_ontology_notes "in EHDAA2 this also develops from 3rd a id: UBERON:0004369 name: Reichert's membrane def: "An nonvascular extraembryonic basement membrane that forms on the inner surface of the trophectoderm during placenta morphogenesis and is secreted by the distal parietal endoderm; required for the maternofetal exchange of nutrients and is important for the postgastrulation development[MP]. a thick multilayered basement membrane between the parietal endoderm cells and the trophoblast cells." [DOI:10.1007/BF00184752, MP:0003954] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:16057 xref: FMA:276826 @@ -248761,6 +254717,8 @@ relationship: surrounded_by UBERON:0000925 ! endoderm id: UBERON:0004370 name: anterior limiting lamina of cornea def: "A transparent homogeneous acellular layer, 6 to 9 um thick, lying between the basal lamina of the outer layer of stratified epithelium and the substantia propria of the cornea; it is considered to be a basement membrane." [ncithesaurus:Bowman_s_Membrane] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "anterior elastic lamina" EXACT [ZFA:0001684] @@ -248796,6 +254754,8 @@ property_value: taxon_notes "Compared to terrestial animals, the cornea of zebra id: UBERON:0004374 name: vitelline vasculature def: "Vascular network that is connected to the yolk sac." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "omphalomesenteric system" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "vitelline bloos vessel system" RELATED [https://orcid.org/0000-0002-6601-2165] @@ -248812,6 +254772,8 @@ id: UBERON:0004375 name: bone of free limb or fin def: "A bone that is part of an appendage [Automatically generated definition]." [OBOL:automatic] subset: homology_grouping +subset: human_subset +subset: mouse_subset synonym: "appendage bone" EXACT [] synonym: "bone of appendage" EXACT [] synonym: "bone of free segment of appendicular skeleton" EXACT [] @@ -248837,6 +254799,8 @@ relationship: part_of UBERON:0012353 ! fin skeleton id: UBERON:0004377 name: distal metaphysis def: "A metaphysis that is in the distal side of a diaphysis." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal diaphyseal end of long bone" EXACT [FMA:32824] xref: FMA:32824 is_a: UBERON:0001438 ! metaphysis @@ -248848,6 +254812,8 @@ relationship: in_distal_side_of UBERON:0004769 ! diaphysis id: UBERON:0004378 name: proximal metaphysis def: "A metaphysis that is in the proximal side of a diaphysis." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "proximal diaphyseal end of long bone" EXACT [FMA:32823] xref: FMA:32823 is_a: UBERON:0001438 ! metaphysis @@ -248859,6 +254825,8 @@ relationship: in_proximal_side_of UBERON:0004769 ! diaphysis id: UBERON:0004379 name: distal epiphysis def: "An epiphysis that is on the distal side of the bone." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "distal end of long bone" EXACT [FMA:32822] xref: FMA:32822 xref: SCTID:279999006 @@ -248872,6 +254840,8 @@ relationship: in_distal_side_of UBERON:0001474 ! bone element id: UBERON:0004380 name: proximal epiphysis def: "An epiphysis that is on the proximal side of the bone." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "proximal end of long bone" EXACT [FMA:32821] xref: FMA:32821 xref: SCTID:279998003 @@ -248885,6 +254855,8 @@ relationship: in_proximal_side_of UBERON:0001474 ! bone element id: UBERON:0004381 name: skeleton of limb def: "The collection of all skeletal elements in an individual limb." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "free limb skeleton" EXACT [VSAO:0000300] synonym: "limb skeleton" EXACT [EHDAA2:0002221] synonym: "set of bones of limb" EXACT [] @@ -248904,6 +254876,8 @@ property_value: external_ontology_notes "EHDAA2 considers hip and shoulder joint id: UBERON:0004382 name: epiphysis of humerus def: "An epiphysis that is part of a humerus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "humeral epiphysis" EXACT [OBOL:automatic] xref: FMA:32825 @@ -248918,6 +254892,8 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:0004383 name: epiphysis of tibia def: "An epiphysis that is part of a tibia [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "tibial epiphysis" EXACT [FMA:33112] xref: EMAPA:37771 {source="MA:th"} @@ -248934,6 +254910,8 @@ relationship: part_of UBERON:0000979 ! tibia id: UBERON:0004384 name: epiphysis of femur def: "An epiphysis that is part of a femur [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "femoral epiphysis" EXACT [FMA:32838] xref: EMAPA:37539 {source="MA:th"} @@ -248950,6 +254928,8 @@ relationship: part_of UBERON:0000981 ! femur id: UBERON:0004385 name: epiphysis of radius def: "An epiphysis that is part of a radius [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "radial epiphysis" EXACT [FMA:33770] xref: FMA:33770 @@ -248964,6 +254944,8 @@ relationship: part_of UBERON:0001423 ! radius bone id: UBERON:0004386 name: epiphysis of ulna def: "An epiphysis that is part of an ulna [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ulnar epiphysis" EXACT [FMA:33748] xref: FMA:33748 @@ -248978,6 +254960,8 @@ relationship: part_of UBERON:0001424 ! ulna id: UBERON:0004387 name: epiphysis of phalanx of manus def: "An epiphysis that is part of a phalanx of a manus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epiphysis of phalanx of finger" EXACT [] synonym: "epiphysis of phalanx of hand" RELATED [FMA:240707] @@ -248992,6 +254976,8 @@ relationship: part_of UBERON:0001436 ! phalanx of manus id: UBERON:0004388 name: epiphysis of fibula def: "An epiphysis that is part of a fibula [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fibula epiphysis" EXACT [FMA:33726] xref: FMA:33726 @@ -249005,6 +254991,8 @@ relationship: part_of UBERON:0001446 ! fibula id: UBERON:0004389 name: epiphysis of metatarsal bone def: "An epiphysis that is part of a metatarsal bone [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epiphysis of metatarsal" EXACT [] synonym: "metatarsal bone epiphysis" EXACT [FMA:33814] @@ -249021,6 +255009,8 @@ relationship: part_of UBERON:0001448 ! metatarsal bone id: UBERON:0004390 name: epiphysis of metacarpal bone def: "An epiphysis that is part of a metacarpal bone [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epiphysis of metacarpal" EXACT [] synonym: "metacarpal bone epiphysis" EXACT [FMA:33792] @@ -249037,6 +255027,8 @@ relationship: part_of UBERON:0002374 ! metacarpal bone id: UBERON:0004391 name: epiphysis of first metacarpal bone def: "An epiphysis that is part of a metacarpal bone of digit 1 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "first metacarpal bone epiphysis" EXACT [FMA:33793] synonym: "metacarpal 1 epiphysis" EXACT [] @@ -249050,6 +255042,8 @@ relationship: part_of UBERON:0003645 ! metacarpal bone of digit 1 id: UBERON:0004392 name: epiphysis of second metacarpal bone def: "An epiphysis that is part of a metacarpal bone of digit 2 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "metacarpal 2 epiphysis" EXACT [] synonym: "second metacarpal bone epiphysis" EXACT [FMA:33794] xref: FMA:33794 @@ -249062,6 +255056,8 @@ relationship: part_of UBERON:0003646 ! metacarpal bone of digit 2 id: UBERON:0004393 name: epiphysis of third metacarpal bone def: "An epiphysis that is part of a metacarpal bone of digit 3 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "metacarpal 3 epiphysis" EXACT [] synonym: "third metacarpal bone epiphysis" EXACT [FMA:86328] xref: FMA:86328 @@ -249074,6 +255070,8 @@ relationship: part_of UBERON:0003647 ! metacarpal bone of digit 3 id: UBERON:0004394 name: epiphysis of fourth metacarpal bone def: "An epiphysis that is part of a metacarpal bone of digit 4 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fourth metacarpal bone epiphysis" EXACT [FMA:86329] synonym: "metacarpal 4 epiphysis" EXACT [] xref: FMA:86329 @@ -249086,6 +255084,8 @@ relationship: part_of UBERON:0003648 ! metacarpal bone of digit 4 id: UBERON:0004395 name: epiphysis of first metatarsal bone def: "An epiphysis that is part of a metatarsal bone of digit 1 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "first metatarsal bone epiphysis" EXACT [FMA:33815] synonym: "metatarsal 1 epiphysis" EXACT [] @@ -249099,6 +255099,8 @@ relationship: part_of UBERON:0003650 ! metatarsal bone of digit 1 id: UBERON:0004396 name: epiphysis of second metatarsal bone def: "An epiphysis that is part of a metatarsal bone of digit 2 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "metatarsal 2 epiphysis" EXACT [] synonym: "second metatarsal bone epiphysis" EXACT [FMA:33816] xref: FMA:33816 @@ -249111,6 +255113,8 @@ relationship: part_of UBERON:0003651 ! metatarsal bone of digit 2 id: UBERON:0004397 name: epiphysis of third metatarsal bone def: "An epiphysis that is part of a metatarsal bone of digit 3 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "metatarsal 3 epiphysis" EXACT [] synonym: "third metatarsal bone epiphysis" EXACT [FMA:86313] xref: FMA:86313 @@ -249123,6 +255127,8 @@ relationship: part_of UBERON:0003652 ! metatarsal bone of digit 3 id: UBERON:0004398 name: epiphysis of fourth metatarsal bone def: "An epiphysis that is part of a metatarsal bone of digit 4 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fourth metatarsal bone epiphysis" EXACT [FMA:86314] synonym: "metatarsal 4 epiphysis" EXACT [] xref: FMA:86314 @@ -249135,6 +255141,8 @@ relationship: part_of UBERON:0003653 ! metatarsal bone of digit 4 id: UBERON:0004399 name: epiphysis of fifth metatarsal bone def: "An epiphysis that is part of a metatarsal bone of digit 5 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fifth metatarsal bone epiphysis" EXACT [FMA:86315] synonym: "metatarsal 5 epiphysis" EXACT [] xref: FMA:86315 @@ -249147,6 +255155,8 @@ relationship: part_of UBERON:0003654 ! metatarsal bone of digit 5 id: UBERON:0004400 name: bone tissue of epiphysis def: "A portion of bone tissue that is part of a epiphysis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:241364 is_a: UBERON:0005808 ! bone tissue of long bone intersection_of: UBERON:0002481 ! bone tissue @@ -249157,6 +255167,8 @@ relationship: part_of UBERON:0001437 ! epiphysis id: UBERON:0004401 name: bone tissue of distal epiphysis def: "A portion of bone tissue that is part of a distal epiphysis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:241374 is_a: UBERON:0004400 ! bone tissue of epiphysis intersection_of: UBERON:0002481 ! bone tissue @@ -249167,6 +255179,8 @@ relationship: part_of UBERON:0004379 ! distal epiphysis id: UBERON:0004402 name: bone tissue of proximal epiphysis def: "A portion of bone tissue that is part of a proximal epiphysis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:241372 is_a: UBERON:0004400 ! bone tissue of epiphysis intersection_of: UBERON:0002481 ! bone tissue @@ -249177,6 +255191,8 @@ relationship: part_of UBERON:0004380 ! proximal epiphysis id: UBERON:0004403 name: periosteum of epiphysis def: "A periosteum that is part of a epiphysis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epiphysis periosteum" EXACT [FMA:32687] xref: FMA:32687 is_a: UBERON:0016896 ! periosteum of long bone @@ -249188,6 +255204,8 @@ relationship: part_of UBERON:0001437 ! epiphysis id: UBERON:0004404 name: distal epiphysis of humerus def: "A distal epiphysis that is part of a humerus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal end of humerus" EXACT [FMA:32826] synonym: "lower end of humerus" EXACT [FMA:32826] @@ -249203,6 +255221,8 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:0004405 name: distal epiphysis of tibia def: "A distal epiphysis that is part of a tibia [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal end of tibia" EXACT [FMA:33116] synonym: "lower end of tibia" EXACT [FMA:33116] @@ -249219,6 +255239,8 @@ relationship: part_of UBERON:0000979 ! tibia id: UBERON:0004406 name: distal epiphysis of femur def: "A distal epiphysis that is part of a femur [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal femoral epiphysis" EXACT [https://orcid.org/0000-0002-6601-2165, OBOL:automatic] synonym: "distal head of femur" RELATED [AAO:0000893] @@ -249236,6 +255258,8 @@ property_value: external_definition "Head of the femur that articulates with the id: UBERON:0004407 name: distal epiphysis of radius def: "A distal epiphysis that is part of a radius [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal end of radius" EXACT [FMA:33776] synonym: "lower end of radius" EXACT [FMA:33776] @@ -249252,6 +255276,8 @@ relationship: part_of UBERON:0001423 ! radius bone id: UBERON:0004408 name: distal epiphysis of ulna def: "A distal epiphysis that is part of a ulna [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal end of ulna" EXACT [FMA:33754] synonym: "lower end of ulna" EXACT [FMA:33754] @@ -249267,6 +255293,8 @@ relationship: part_of UBERON:0001424 ! ulna id: UBERON:0004409 name: distal epiphysis of phalanx of manus def: "A distal epiphysis that is part of a phalanx of manus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal end of phalanx of hand" RELATED [FMA:226577] synonym: "distal epiphysis of phalanx of finger" EXACT [] synonym: "distal epiphysis of phalanx of hand" RELATED [FMA:226577] @@ -249285,6 +255313,8 @@ relationship: part_of UBERON:0001436 ! phalanx of manus id: UBERON:0004410 name: distal epiphysis of fibula def: "A distal epiphysis that is part of a fibula [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal end of fibula" EXACT [FMA:33732] synonym: "lower end of fibula" EXACT [FMA:33732] @@ -249301,6 +255331,8 @@ relationship: part_of UBERON:0001446 ! fibula id: UBERON:0004411 name: proximal epiphysis of humerus def: "The upper extremity of the humerus (proximal humerus) consists of a large rounded head joined to the body by a constricted portion called the neck, and two eminences, the greater and lesser tubercles." [Wikipedia:Upper_extremity_of_humerus] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "head of the humerus" RELATED [Wikipedia:Upper_extremity_of_humerus] synonym: "humeral head" RELATED [Wikipedia:Upper_extremity_of_humerus] @@ -249323,6 +255355,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ad/Gr id: UBERON:0004412 name: proximal epiphysis of femur def: "A proximal epiphysis that is part of a femur [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "capital femoral epiphysis" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "proximal femoral epiphysis" EXACT [https://orcid.org/0000-0002-6601-2165, OBOL:automatic] @@ -249338,6 +255372,8 @@ relationship: part_of UBERON:0000981 ! femur id: UBERON:0004413 name: proximal epiphysis of radius def: "A proximal epiphysis that is part of a radius [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "proximal end of radius" EXACT [FMA:39780] synonym: "proximal radial epiphysis" EXACT [https://orcid.org/0000-0002-6601-2165, OBOL:automatic] @@ -249355,6 +255391,8 @@ relationship: part_of UBERON:0001423 ! radius bone id: UBERON:0004414 name: proximal epiphysis of phalanx of manus def: "A proximal epiphysis that is part of a phalanx of manus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal epiphysis of phalanx of finger" EXACT [FMA:226482] synonym: "base of phalanx of finger" EXACT [FMA:226482] synonym: "basis phalangis manus" EXACT OMO:0003011 [FMA:226482, FMA:TA] @@ -249372,6 +255410,8 @@ relationship: part_of UBERON:0001436 ! phalanx of manus id: UBERON:0004415 name: proximal epiphysis of metatarsal bone def: "A proximal epiphysis that is part of a metatarsal bone [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "base of metatarsal bone" EXACT [FMA:33817] synonym: "basis ossis metatarsi" EXACT OMO:0003011 [FMA:33817, FMA:TA] synonym: "proximal end of metatarsal bone" EXACT [FMA:33817] @@ -249388,6 +255428,8 @@ relationship: part_of UBERON:0001448 ! metatarsal bone id: UBERON:0004416 name: proximal epiphysis of metacarpal bone def: "A proximal epiphysis that is part of a metacarpal bone [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "base of metacarpal bone" EXACT [FMA:33795] synonym: "basis ossis metacarpi" EXACT OMO:0003011 [FMA:33795, FMA:TA] synonym: "metacarpal bone base" EXACT [FMA:33795] @@ -249405,6 +255447,8 @@ relationship: part_of UBERON:0002374 ! metacarpal bone id: UBERON:0004417 name: proximal epiphysis of phalanx of manual digit 1 def: "A proximal epiphysis that is part of a manual digit 1 phalanx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal epiphysis of phalanx of thumb" EXACT [FMA:37489] synonym: "base of phalanx of first digit of hand" EXACT [FMA:37489] synonym: "base of phalanx of thumb" EXACT [FMA:37489] @@ -249422,6 +255466,8 @@ relationship: part_of UBERON:0003620 ! manual digit 1 phalanx id: UBERON:0004418 name: proximal epiphysis of phalanx of manual digit 2 def: "A proximal epiphysis that is part of a manual digit 2 phalanx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal epiphysis of phalanx of index finger" EXACT [FMA:37498] synonym: "base of phalanx of index finger" EXACT [FMA:37498] synonym: "base of phalanx of second digit of hand" EXACT [FMA:37498] @@ -249440,6 +255486,8 @@ relationship: part_of UBERON:0003636 ! manual digit 2 phalanx id: UBERON:0004419 name: proximal epiphysis of phalanx of manual digit 3 def: "A proximal epiphysis that is part of a manual digit 3 phalanx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal epiphysis of phalanx of middle finger" EXACT [FMA:37510] synonym: "base of phalanx of middle finger" EXACT [FMA:37510] synonym: "base of phalanx of third digit of hand" EXACT [FMA:37510] @@ -249458,6 +255506,8 @@ relationship: part_of UBERON:0003637 ! manual digit 3 phalanx id: UBERON:0004420 name: proximal epiphysis of phalanx of manual digit 4 def: "A proximal epiphysis that is part of a manual digit 4 phalanx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal epiphysis of phalanx of ring finger" EXACT [FMA:37522] synonym: "base of phalanx of fourth digit of hand" EXACT [FMA:37522] synonym: "base of phalanx of fourth finger" EXACT [FMA:37522] @@ -249476,6 +255526,8 @@ relationship: part_of UBERON:0003638 ! manual digit 4 phalanx id: UBERON:0004421 name: proximal epiphysis of phalanx of manual digit 5 def: "A proximal epiphysis that is part of a manual digit 5 phalanx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal epiphysis of phalanx of fifth finger" EXACT [FMA:37534] synonym: "basal epiphysis of phalanx of little finger" EXACT [FMA:37534] synonym: "base of phalanx of fifth digit of hand" EXACT [FMA:37534] @@ -249495,6 +255547,8 @@ relationship: part_of UBERON:0003639 ! manual digit 5 phalanx id: UBERON:0004422 name: proximal epiphysis of first metacarpal bone def: "A proximal epiphysis that is part of a metacarpal bone of digit 1 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "base of first metacarpal bone" EXACT [FMA:42788] synonym: "first metacarpal bone base" EXACT [FMA:42788] synonym: "proximal epiphysis of metacarpal 1" EXACT [] @@ -249510,6 +255564,8 @@ relationship: part_of UBERON:0003645 ! metacarpal bone of digit 1 id: UBERON:0004423 name: proximal epiphysis of second metacarpal bone def: "A proximal epiphysis that is part of a metacarpal bone of digit 2 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "base of second metacarpal bone" EXACT [FMA:42791] synonym: "proximal end of second metacarpal bone" EXACT [FMA:42791] synonym: "proximal epiphysis of metacarpal 2" EXACT [] @@ -249526,6 +255582,8 @@ relationship: part_of UBERON:0003646 ! metacarpal bone of digit 2 id: UBERON:0004424 name: proximal epiphysis of third metacarpal bone def: "A proximal epiphysis that is part of a metacarpal bone of digit 3 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "base of third metacarpal bone" EXACT [FMA:42794] synonym: "proximal end of third metacarpal bone" EXACT [FMA:42794] synonym: "proximal epiphysis of metacarpal 3" EXACT [] @@ -249542,6 +255600,8 @@ relationship: part_of UBERON:0003647 ! metacarpal bone of digit 3 id: UBERON:0004425 name: proximal epiphysis of fourth metacarpal bone def: "A proximal epiphysis that is part of a metacarpal bone of digit 4 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "base of fourth metacarpal bone" EXACT [FMA:42797] synonym: "fourth metacarpal bone base" EXACT [FMA:42797] synonym: "proximal end of fourth metacarpal bone" EXACT [FMA:42797] @@ -249558,6 +255618,8 @@ relationship: part_of UBERON:0003648 ! metacarpal bone of digit 4 id: UBERON:0004426 name: proximal epiphysis of fifth metacarpal bone def: "A proximal epiphysis that is part of a metacarpal bone of digit 5 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "base of fifth metacarpal bone" EXACT [FMA:42800] synonym: "fifth metacarpal bone base" EXACT [FMA:42800] synonym: "proximal end of fifth metacarpal bone" EXACT [FMA:42800] @@ -249574,6 +255636,8 @@ relationship: part_of UBERON:0003649 ! metacarpal bone of digit 5 id: UBERON:0004427 name: proximal epiphysis of first metatarsal bone def: "A proximal epiphysis that is part of a metatarsal bone of digit 1 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "base of first metatarsal bone" EXACT [FMA:42963] synonym: "proximal end of first metatarsal bone" EXACT [FMA:42963] synonym: "proximal epiphysis of metatarsal 1" EXACT [] @@ -249589,6 +255653,8 @@ relationship: part_of UBERON:0003650 ! metatarsal bone of digit 1 id: UBERON:0004428 name: proximal epiphysis of second metatarsal bone def: "A proximal epiphysis that is part of a metatarsal bone of digit 2 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "base of second metatarsal bone" EXACT [FMA:42964] synonym: "proximal end of second metatarsal bone" EXACT [FMA:42964] synonym: "proximal epiphysis of metatarsal 2" EXACT [] @@ -249604,6 +255670,8 @@ relationship: part_of UBERON:0003651 ! metatarsal bone of digit 2 id: UBERON:0004429 name: proximal epiphysis of third metatarsal bone def: "A proximal epiphysis that is part of a metatarsal bone of digit 3 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "base of third metatarsal bone" EXACT [FMA:42965] synonym: "proximal end of third metatarsal bone" EXACT [FMA:42965] synonym: "proximal epiphysis of metatarsal 3" EXACT [] @@ -249619,6 +255687,8 @@ relationship: part_of UBERON:0003652 ! metatarsal bone of digit 3 id: UBERON:0004430 name: proximal epiphysis of fourth metatarsal bone def: "A proximal epiphysis that is part of a metatarsal bone of digit 4 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "base of fourth metatarsal bone" EXACT [FMA:42966] synonym: "proximal end of fourth metatarsal bone" EXACT [FMA:42966] synonym: "proximal epiphysis of metatarsal 4" EXACT [] @@ -249634,6 +255704,8 @@ relationship: part_of UBERON:0003653 ! metatarsal bone of digit 4 id: UBERON:0004431 name: proximal epiphysis of fifth metatarsal bone def: "A proximal epiphysis that is part of a metatarsal bone of digit 5 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "base of fifth metatarsal bone" EXACT [FMA:42967] synonym: "proximal end of fifth metatarsal bone" EXACT [FMA:42967] synonym: "proximal epiphysis of metatarsal 5" EXACT [] @@ -249649,6 +255721,8 @@ relationship: part_of UBERON:0003654 ! metatarsal bone of digit 5 id: UBERON:0004432 name: proximal epiphysis of distal phalanx of manual digit 2 def: "A proximal epiphysis that is part of a distal phalanx of manual digit 2 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal epiphysis of distal phalanx of index finger" EXACT [FMA:37505] synonym: "base of distal phalanx of index finger" EXACT [FMA:37505] synonym: "base of distal phalanx of second digit of hand" EXACT [FMA:37505] @@ -249667,6 +255741,8 @@ relationship: part_of UBERON:0004311 ! distal phalanx of manual digit 2 id: UBERON:0004433 name: proximal epiphysis of distal phalanx of manual digit 3 def: "A proximal epiphysis that is part of a distal phalanx of manual digit 3 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "base of distal phalanx of middle finger" EXACT [FMA:37517] synonym: "base of distal phalanx of third digit of hand" EXACT [FMA:37517] synonym: "base of distal phalanx of third finger" EXACT [FMA:37517] @@ -249684,6 +255760,8 @@ relationship: part_of UBERON:0004312 ! distal phalanx of manual digit 3 id: UBERON:0004434 name: proximal epiphysis of distal phalanx of manual digit 4 def: "A proximal epiphysis that is part of a distal phalanx of manual digit 4 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal epiphysis of distal phalanx of fourth finger" EXACT [FMA:37529] synonym: "basal epiphysis of distal phalanx of ring finger" EXACT [FMA:37529] synonym: "base of distal phalanx of fourth digit of hand" EXACT [FMA:37529] @@ -249703,6 +255781,8 @@ relationship: part_of UBERON:0004313 ! distal phalanx of manual digit 4 id: UBERON:0004435 name: proximal epiphysis of distal phalanx of manual digit 5 def: "A proximal epiphysis that is part of a distal phalanx of manual digit 5 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal epiphysis of distal phalanx of fifth finger" EXACT [FMA:37541] synonym: "basal epiphysis of distal phalanx of little finger" EXACT [FMA:37541] synonym: "base of distal phalanx of fifth digit of hand" EXACT [FMA:37541] @@ -249722,6 +255802,8 @@ relationship: part_of UBERON:0004314 ! distal phalanx of manual digit 5 id: UBERON:0004436 name: proximal epiphysis of middle phalanx of manual digit 2 def: "A proximal epiphysis that is part of a middle phalanx of manual digit 2 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal epiphysis of middle phalanx of index finger" EXACT [FMA:37502] synonym: "base of middle phalanx of index finger" EXACT [FMA:37502] synonym: "base of middle phalanx of second digit of hand" EXACT [FMA:37502] @@ -249740,6 +255822,8 @@ relationship: part_of UBERON:0004320 ! middle phalanx of manual digit 2 id: UBERON:0004437 name: proximal epiphysis of middle phalanx of manual digit 3 def: "A proximal epiphysis that is part of a middle phalanx of manual digit 3 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal epiphysis of middle phalanx of middle finger" EXACT [FMA:37514] synonym: "base of middle phalanx of middle finger" EXACT [FMA:37514] synonym: "base of middle phalanx of third digit of hand" EXACT [FMA:37514] @@ -249758,6 +255842,8 @@ relationship: part_of UBERON:0004321 ! middle phalanx of manual digit 3 id: UBERON:0004438 name: proximal epiphysis of middle phalanx of manual digit 4 def: "A proximal epiphysis that is part of a middle phalanx of manual digit 4 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal epiphysis of middle phalanx of fourth finger" EXACT [FMA:37526] synonym: "basal epiphysis of middle phalanx of ring finger" EXACT [FMA:37526] synonym: "base of middle phalanx of fourth digit of hand" EXACT [FMA:37526] @@ -249777,6 +255863,8 @@ relationship: part_of UBERON:0004322 ! middle phalanx of manual digit 4 id: UBERON:0004439 name: proximal epiphysis of middle phalanx of manual digit 5 def: "A proximal epiphysis that is part of a middle phalanx of manual digit 5 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal epiphysis of middle phalanx of fifth finger" EXACT [FMA:37538] synonym: "basal epiphysis of middle phalanx of little finger" EXACT [FMA:37538] synonym: "base of middle phalanx of fifth digit of hand" EXACT [FMA:37538] @@ -249796,6 +255884,8 @@ relationship: part_of UBERON:0004323 ! middle phalanx of manual digit 5 id: UBERON:0004440 name: proximal epiphysis of proximal phalanx of manual digit 2 def: "A proximal epiphysis that is part of a proximal phalanx of manual digit 2 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "base of proximal phalanx of index finger" EXACT [FMA:37499] synonym: "base of proximal phalanx of second digit of hand" EXACT [FMA:37499] synonym: "base of proximal phalanx of second finger" EXACT [FMA:37499] @@ -249813,6 +255903,8 @@ relationship: part_of UBERON:0004328 ! proximal phalanx of manual digit 2 id: UBERON:0004441 name: proximal epiphysis of proximal phalanx of manual digit 3 def: "A proximal epiphysis that is part of a proximal phalanx of manual digit 3 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal epiphysis of proximal phalanx of middle finger" EXACT [FMA:37511] synonym: "base of proximal phalanx of middle finger" EXACT [FMA:37511] synonym: "base of proximal phalanx of third digit of hand" EXACT [FMA:37511] @@ -249831,6 +255923,8 @@ relationship: part_of UBERON:0004329 ! proximal phalanx of manual digit 3 id: UBERON:0004442 name: proximal epiphysis of proximal phalanx of manual digit 4 def: "A proximal epiphysis that is part of a proximal phalanx of manual digit 4 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal epiphysis of proximal phalanx of fourth finger" EXACT [FMA:37523] synonym: "basal epiphysis of proximal phalanx of ring finger" EXACT [FMA:37523] synonym: "base of proximal phalanx of fourth digit of hand" EXACT [FMA:37523] @@ -249850,6 +255944,8 @@ relationship: part_of UBERON:0004330 ! proximal phalanx of manual digit 4 id: UBERON:0004443 name: proximal epiphysis of proximal phalanx of manual digit 5 def: "A proximal epiphysis that is part of a proximal phalanx of manual digit 5 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal epiphysis of proximal phalanx of little finger" EXACT [FMA:37535] synonym: "base of proximal phalanx of fifth digit of hand" EXACT [FMA:37535] synonym: "base of proximal phalanx of fifth finger" EXACT [FMA:37535] @@ -249868,6 +255964,8 @@ relationship: part_of UBERON:0004331 ! proximal phalanx of manual digit 5 id: UBERON:0004444 name: proximal epiphysis of distal phalanx of manual digit 1 def: "A proximal epiphysis that is part of a distal phalanx of manual digit 1 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "base of distal phalanx of thumb" EXACT [FMA:37493] synonym: "proximal epiphysis of distal phalanx of manual digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "proximal epiphysis of distal phalanx of thumb" NARROW SENSU [FMA:37493, NCBITaxon:9606] @@ -249883,6 +255981,8 @@ relationship: part_of UBERON:0004337 ! distal phalanx of manual digit 1 id: UBERON:0004445 name: proximal epiphysis of proximal phalanx of manual digit 1 def: "A proximal epiphysis that is part of a proximal phalanx of manual digit 1 [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal epiphysis of proximal phalanx of thumb" EXACT [FMA:37490] synonym: "base of proximal phalanx of thumb" EXACT [FMA:37490] synonym: "proximal epiphysis of proximal phalanx of manual digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -249899,6 +255999,8 @@ relationship: part_of UBERON:0004338 ! proximal phalanx of manual digit 1 id: UBERON:0004446 name: epiphysis of phalanx def: "An epiphysis that is part of a phalanx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: SCTID:280033007 is_a: UBERON:0001437 ! epiphysis @@ -249911,6 +256013,8 @@ relationship: part_of UBERON:0003221 ! phalanx id: UBERON:0004447 name: proximal epiphysis of phalanx def: "A proximal epiphysis that is part of a phalanx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004380 ! proximal epiphysis is_a: UBERON:0004446 ! epiphysis of phalanx intersection_of: UBERON:0004380 ! proximal epiphysis @@ -249921,6 +256025,8 @@ relationship: part_of UBERON:0003221 ! phalanx id: UBERON:0004448 name: distal epiphysis of phalanx def: "A distal epiphysis that is part of a phalanx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "head of phalanx" EXACT [] xref: SCTID:110520001 is_a: UBERON:0004379 ! distal epiphysis @@ -249933,6 +256039,8 @@ relationship: part_of UBERON:0003221 ! phalanx id: UBERON:0004449 name: cerebral artery def: "One of three main pairs of arteries and their branches, which irrigate the cerebrum of the brain." [Wikipedia:Cerebral_artery] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: AAO:0010493 xref: BTO:0005205 @@ -249962,6 +256070,8 @@ property_value: external_ontology_notes "in AAO this is part_of the internal car id: UBERON:0004450 name: gastric vein def: "A laterally paired vein that drains blood away from the lesser curvature of the stomach." [ncithesaurus:Gastric_Vein, UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "vena gastrica" EXACT OMO:0003011 [Wikipedia:Gastric_vein] xref: AAO:0011046 xref: EMAPA:37146 {source="MA:th"} @@ -249984,6 +256094,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0004451 name: trunk or cervical vertebra def: "A vertebra in the trunk or cervical region. Includes all cervical, thoracic and lumbar vertebrae, but excludes caudal vertebra." [UBERONREF:0000006] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "presacral vertebra" RELATED [MA:0002869] xref: EMAPA:37722 {source="MA:th"} @@ -250003,6 +256115,8 @@ id: UBERON:0004452 name: carpal region alt_id: UBERON:0001462 def: "A mesopodium that is part of a manus. Includes as parts the carpal skeleton and associated tissues[cjm]. The anatomical region surrounding the carpus including the distal parts of the bones of the forearm and the proximal parts of the metacarpus or five metacarpal bones and the series of joints between these bones, thus referred to as wrist joints. This region also includes the carpal tunnel, the anatomical snuff box, the flexor retinaculum, and the extensor retinaculum[WP,unvetted]." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Wrist] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "articulatio radiocarpea" RELATED OMO:0003011 [Wikipedia:Wrist] @@ -250044,6 +256158,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/cc/H id: UBERON:0004453 name: metacarpus region def: "A metapodium region that is part of a manus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal segment of hand proper" EXACT [FMA:24925] synonym: "forelimb cannon region" NARROW [http://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] @@ -250075,6 +256191,8 @@ name: tarsal region alt_id: UBERON:0002388 def: "Mesopodial segment of the pes, including the tarsal skeleton and associated tissues." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Ankle] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ankle" EXACT [MA:0000043] @@ -250113,6 +256231,8 @@ id: UBERON:0004455 name: neurula embryo alt_id: UBERON:0007013 def: "An embryo at the neurula stage." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "neurula" EXACT [BTO:0001766] xref: BILA:0000061 xref: BTO:0001766 @@ -250128,6 +256248,8 @@ relationship: existence_starts_and_ends_during UBERON:0000110 ! neurula stage id: UBERON:0004456 name: entire sense organ system def: "Sum of all sensory systems in an organism." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "sense organ system" EXACT [FMA:78499] xref: FMA:78499 @@ -250157,6 +256279,8 @@ id: UBERON:0004461 name: skeletal musculature of head def: "Any collection of skeletal muscles that is part of a head [Automatically generated definition]." [OBOL:automatic] comment: This class is restricted to skeletal muscles that attach to the cranial skeleton. This seems to be consistent with FMA and EMAPA usage. Note that by definition this excludes invertebrate head musculature. It corresponds to the individual muscle organ term UBERON:0002376 +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "head musculature" EXACT [FMA:71287] synonym: "muscle group of head" EXACT [FMA:71287] @@ -250180,6 +256304,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/1405" xsd id: UBERON:0004462 name: musculature of body wall def: "Any collection of muscles that is part of a body wall [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "body wall muscles" RELATED [] synonym: "body wall musculature" EXACT [FMA:86931] xref: BSA:0000058 @@ -250197,6 +256323,8 @@ property_value: taxon_notes "define generically to encompass both vertebrates an id: UBERON:0004463 name: musculature of hindlimb stylopod def: "Any collection of muscles that is part of a hindlimb stylopod (upper leg / thigh)[Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "muscle group of thigh" EXACT [FMA:50208] synonym: "musculature of thigh" EXACT [FMA:50208] @@ -250212,6 +256340,8 @@ relationship: part_of UBERON:0000376 ! hindlimb stylopod id: UBERON:0004464 name: musculature of thorax def: "Any collection of muscles that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "muscle group of thorax" EXACT [FMA:71293] synonym: "muscles of thorax" EXACT [FMA:71293] @@ -250231,6 +256361,8 @@ property_value: external_ontology_notes "BTO and FMA do not mean precisely the s id: UBERON:0004465 name: musculature of neck def: "Any collection of muscles that is part of a neck [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cervical muscles" EXACT [AAO:0000091] synonym: "muscle group of neck" EXACT [FMA:71290] @@ -250253,6 +256385,8 @@ id: UBERON:0004466 name: musculature of leg alt_id: UBERON:0005632 def: "Any collection of muscles that is part of a lower leg or upper leg [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "leg muscle system" EXACT [EHDAA2:0000973] xref: EHDAA2:0000973 is_a: UBERON:0004482 ! musculature of lower limb @@ -250266,6 +256400,8 @@ id: UBERON:0004467 name: musculature of pharynx def: "The collection of muscles that acts on the pharynx." [http://orcid.org/0000-0002-6601-2165] comment: See comments for 'pharyngeal muscle' +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "pharyngeal musculature" EXACT [TAO:0001307] synonym: "set of muscles of pharynx" RELATED [FMA:264609] @@ -250278,6 +256414,8 @@ relationship: overlaps UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0004468 name: set of muscles of vertebral column +subset: human_subset +subset: mouse_subset synonym: "muscle group of vertebral column" EXACT [FMA:33061] xref: FMA:33061 is_a: UBERON:0001015 ! musculature @@ -250290,6 +256428,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0004469 name: musculature of back def: "Any collection of muscles that is part of a back [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscle group of back" EXACT [FMA:71291] synonym: "muscles of back" EXACT [FMA:71291] synonym: "musculi dorsi" EXACT OMO:0003011 [FMA:71291, FMA:TA] @@ -250306,6 +256446,8 @@ name: musculature of pelvic girdle alt_id: UBERON:0004485 alt_id: UBERON:0005633 def: "Any collection of muscles that is part of a pelvic girdle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "muscle group of pelvic girdle" EXACT [FMA:50205] synonym: "muscle group of pelvis" EXACT [FMA:50248] @@ -250331,6 +256473,8 @@ property_value: external_ontology_notes "we merge two FMA classes here" xsd:stri id: UBERON:0004471 name: musculature of pectoral girdle def: "A subdivision of the musculature of the body in the pectoral girdle region. Includes pectoral and shoulder muscles." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "muscle group of pectoral girdle" EXACT [FMA:33519] synonym: "pectoral girdle muscles" EXACT [AAO:0000423] @@ -250358,6 +256502,8 @@ consider: UBERON:0004464 id: UBERON:0004473 name: musculature of face def: "Any collection of muscles that is part of a face." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "entire facial musculature" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "facial muscles" EXACT [FMA:71288] @@ -250376,6 +256522,8 @@ property_value: editor_note "originally created to reflect the distinction drawn id: UBERON:0004474 name: musculature of arm def: "Any collection of muscles that is part of an arm [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "arm muscle system" EXACT [EHDAA2:0000141] synonym: "arm musculature" EXACT [FMA:50202] @@ -250391,6 +256539,8 @@ relationship: part_of UBERON:0001460 ! arm id: UBERON:0004475 name: musculature of hip def: "The collection of muscles that form attachments to the hip skeleton." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hip musculature" EXACT [FMA:50227] synonym: "muscle group of hip" EXACT [FMA:50227] @@ -250407,6 +256557,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0004476 name: musculature of shoulder def: "The collection of muscles that form attachments to the shoulder skeleton." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "muscle group of shoulder" EXACT [FMA:50220] synonym: "set of muscles of shoulder" EXACT [FMA:50220] @@ -250432,6 +256584,8 @@ consider: FMA:71289 id: UBERON:0004478 name: musculature of larynx def: "The collection of muscles that are part of the larynx." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "laryngeal muscles" EXACT [FMA:46616] synonym: "laryngeal muscles set" EXACT [FMA:46616] synonym: "muscle group of larynx" EXACT [FMA:46616] @@ -250453,6 +256607,8 @@ id: UBERON:0004479 name: musculature of trunk def: "Any collection of muscles that is part of a trunk [Automatically generated definition]." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "muscle group of trunk" EXACT [FMA:50187] synonym: "muscular system of trunk" RELATED [FMA:50187] @@ -250471,6 +256627,8 @@ id: UBERON:0004480 name: musculature of limb alt_id: UBERON:0005635 def: "Any collection of muscles that is part of a limb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "limb muscle system" EXACT [EHDAA2:0000995] synonym: "limb musculature" EXACT [FMA:50188] @@ -250489,6 +256647,8 @@ property_value: editor_note "currently defined by location rather than attachmen id: UBERON:0004481 name: musculature of upper limb def: "Any collection of muscles that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "free upper limb musculature" EXACT [FMA:50396] synonym: "muscle group of free upper limb" EXACT [FMA:50396] @@ -250506,6 +256666,8 @@ property_value: editor_note "currently defined by location rather than attachmen id: UBERON:0004482 name: musculature of lower limb def: "Any collection of muscles that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "free lower limb musculature" EXACT [FMA:50399] synonym: "muscle group of free lower limb" EXACT [FMA:50399] @@ -250538,6 +256700,8 @@ consider: FMA:22596 id: UBERON:0004486 name: musculature of perineum def: "Any collection of muscles that is part of a perineum [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "musculi perinei" EXACT OMO:0003011 [FMA:71295, FMA:TA] synonym: "perineal muscles" EXACT [FMA:71295] synonym: "perineal muscles set" EXACT [FMA:71295] @@ -250553,6 +256717,8 @@ property_value: editor_note "currently defined by location rather than attachmen id: UBERON:0004487 name: musculature of forelimb zeugopod def: "Any collection of muscles that is part of a lower arm [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscle group of forearm" EXACT [FMA:39089] synonym: "musculature of forearm" EXACT [FMA:39089] synonym: "set of muscles of forearm" EXACT [FMA:39089] @@ -250566,6 +256732,8 @@ relationship: part_of UBERON:0002386 ! forelimb zeugopod id: UBERON:0004488 name: musculature of pes def: "Any collection of muscles that is part of a foot [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "foot musculature" EXACT [FMA:50214] synonym: "muscle group of foot" EXACT [FMA:50214] @@ -250582,6 +256750,8 @@ property_value: editor_note "currently defined by location rather than attachmen id: UBERON:0004489 name: musculature of manus def: "Any collection of muscles that is part of a manus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hand musculature" EXACT [FMA:42368] synonym: "muscle group of hand" EXACT [FMA:42368] @@ -250598,6 +256768,8 @@ property_value: editor_note "currently defined by location rather than attachmen id: UBERON:0004490 name: cardiac muscle tissue of atrium def: "A portion of cardiac muscle tissue that is part of an atrium [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "atrial cardiac muscle tissue" EXACT [GO:0055009] synonym: "atrial heart muscle" EXACT [GO:0055009] synonym: "atrial myocardium" RELATED [GO:0055009, GOC:mtg_heart] @@ -250614,6 +256786,8 @@ property_value: external_ontology_notes "in GO, this is equivalent to the atrial id: UBERON:0004491 name: cardiac muscle tissue of interatrial septum def: "A portion of cardiac muscle tissue that is part of a interatrial septum [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interatrial septum cardiac muscle tissue" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "interatrial septum heart muscle" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "interatrial septum muscle" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -250628,6 +256802,8 @@ relationship: part_of UBERON:0002085 ! interatrial septum id: UBERON:0004492 name: cardiac muscle tissue of cardiac septum def: "A portion of cardiac muscle tissue that is part of a cardiac septum [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cardiac septum cardiac muscle tissue" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "cardiac septum heart muscle" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "cardiac septum muscle" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -250642,6 +256818,8 @@ relationship: part_of UBERON:0002099 ! cardiac septum id: UBERON:0004493 name: cardiac muscle tissue of myocardium def: "A portion of cardiac muscle tissue that is part of a myocardium [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:261726 xref: MA:0002441 @@ -250655,6 +256833,8 @@ property_value: editor_note "Note placement of MA class based on parthood relati id: UBERON:0004494 name: cardiac muscle tissue of papillary muscle def: "A portion of cardiac muscle tissue that is part of a papillary muscle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:84425 is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle intersection_of: UBERON:0001133 ! cardiac muscle tissue @@ -250665,6 +256845,8 @@ relationship: part_of UBERON:0002494 ! papillary muscle of heart id: UBERON:0004495 name: skeletal muscle tissue of diaphragm def: "A portion of skeletal muscle tissue that is part of a diaphragm [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:261898 is_a: UBERON:0003898 ! skeletal muscle tissue of trunk is_a: UBERON:0004830 ! respiratory system skeletal muscle @@ -250676,6 +256858,8 @@ relationship: part_of UBERON:0001103 ! diaphragm id: UBERON:0004496 name: skeletal muscle tissue of iliacus def: "A portion of skeletal muscle tissue that is part of a iliacus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:261992 is_a: UBERON:0003898 ! skeletal muscle tissue of trunk intersection_of: UBERON:0001134 ! skeletal muscle tissue @@ -250686,6 +256870,8 @@ relationship: part_of UBERON:0001369 ! iliacus muscle id: UBERON:0004497 name: skeletal muscle tissue of gluteus maximus def: "A portion of skeletal muscle tissue that is part of a gluteus maximus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:261980 is_a: UBERON:0003898 ! skeletal muscle tissue of trunk intersection_of: UBERON:0001134 ! skeletal muscle tissue @@ -250696,6 +256882,8 @@ relationship: part_of UBERON:0001370 ! gluteus maximus id: UBERON:0004498 name: skeletal muscle tissue of quadriceps femoris def: "A portion of skeletal muscle tissue that is part of a quadriceps femoris [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:261998 is_a: UBERON:0001134 ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue @@ -250706,6 +256894,8 @@ relationship: part_of UBERON:0001377 ! quadriceps femoris id: UBERON:0004499 name: skeletal muscle tissue of tibialis anterior def: "A portion of skeletal muscle tissue that is part of a tibialis anterior [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:262004 is_a: UBERON:0001134 ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue @@ -250716,6 +256906,8 @@ relationship: part_of UBERON:0001385 ! tibialis anterior id: UBERON:0004500 name: skeletal muscle tissue of deltoid def: "A portion of skeletal muscle tissue that is part of a deltoid [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "skeletal muscle tissue of deltoid muscle" RELATED [FMA:261732] xref: FMA:261732 is_a: UBERON:0001134 ! skeletal muscle tissue @@ -250727,6 +256919,8 @@ relationship: part_of UBERON:0001476 ! deltoid id: UBERON:0004501 name: skeletal muscle tissue of teres major def: "A portion of skeletal muscle tissue that is part of a teres major [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "skeletal muscle tissue of teres major muscle" RELATED [FMA:261962] xref: FMA:261962 is_a: UBERON:0001134 ! skeletal muscle tissue @@ -250738,6 +256932,8 @@ relationship: part_of UBERON:0001478 ! teres major muscle id: UBERON:0004502 name: skeletal muscle tissue of biceps brachii def: "A portion of skeletal muscle tissue that is part of a biceps brachii [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "skeletal muscle tissue of biceps brachii muscle" RELATED [FMA:261974] xref: FMA:261974 is_a: UBERON:0001134 ! skeletal muscle tissue @@ -250749,6 +256945,8 @@ relationship: part_of UBERON:0001507 ! biceps brachii id: UBERON:0004503 name: skeletal muscle tissue of digastric def: "A portion of skeletal muscle tissue that is part of a digastric [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:261872 is_a: UBERON:0001134 ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue @@ -250759,6 +256957,8 @@ relationship: part_of UBERON:0001562 ! digastric muscle group id: UBERON:0004504 name: skeletal muscle tissue of mylohyoid def: "A portion of skeletal muscle tissue that is part of a mylohyoid [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:261878 is_a: UBERON:0001134 ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue @@ -250769,6 +256969,8 @@ relationship: part_of UBERON:0001564 ! mylohyoid muscle id: UBERON:0004505 name: skeletal muscle tissue of orbicularis oculi def: "A portion of skeletal muscle tissue that is part of a orbicularis oculi [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:261812 is_a: UBERON:0003269 ! skeletal muscle tissue of eye intersection_of: UBERON:0001134 ! skeletal muscle tissue @@ -250779,6 +256981,8 @@ relationship: part_of UBERON:0001578 ! orbicularis oculi muscle id: UBERON:0004506 name: skeletal muscle tissue of masseter def: "A portion of skeletal muscle tissue that is part of a masseter [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:261824 is_a: UBERON:0001134 ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue @@ -250789,6 +256993,8 @@ relationship: part_of UBERON:0001597 ! masseter muscle id: UBERON:0004507 name: skeletal muscle tissue of temporalis def: "A portion of skeletal muscle tissue that is part of a temporalis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:261740 is_a: UBERON:0001134 ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue @@ -250799,6 +257005,8 @@ relationship: part_of UBERON:0001598 ! temporalis muscle id: UBERON:0004508 name: skeletal muscle tissue of levator palpebrae superioris def: "A portion of skeletal muscle tissue that is part of a levator palpebrae superioris [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:261782 is_a: UBERON:0003269 ! skeletal muscle tissue of eye is_a: UBERON:0010313 ! neural crest-derived structure @@ -250810,6 +257018,8 @@ relationship: part_of UBERON:0001604 ! levator palpebrae superioris id: UBERON:0004509 name: skeletal muscle tissue of trapezius def: "A portion of skeletal muscle tissue that is part of a trapezius [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "skeletal muscle tissue of trapezius muscle" RELATED [FMA:261938] xref: FMA:261938 is_a: UBERON:0001134 ! skeletal muscle tissue @@ -250822,6 +257032,8 @@ relationship: part_of UBERON:0002380 ! trapezius muscle id: UBERON:0004510 name: skeletal muscle tissue of pectoralis major def: "A portion of skeletal muscle tissue that is part of a pectoralis major [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "skeletal muscle tissue of pectoralis major muscle" RELATED [FMA:261968] xref: FMA:261968 is_a: UBERON:0003898 ! skeletal muscle tissue of trunk @@ -250833,6 +257045,8 @@ relationship: part_of UBERON:0002381 ! pectoralis major id: UBERON:0004511 name: skeletal muscle tissue of rectus abdominis def: "A portion of skeletal muscle tissue that is part of a rectus abdominis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:261924 is_a: UBERON:0003898 ! skeletal muscle tissue of trunk intersection_of: UBERON:0001134 ! skeletal muscle tissue @@ -250843,6 +257057,8 @@ relationship: part_of UBERON:0002382 ! rectus abdominis muscle id: UBERON:0004512 name: skeletal muscle tissue of supraspinatus def: "A portion of skeletal muscle tissue that is part of a supraspinatus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "skeletal muscle tissue of supraspinatus muscle" RELATED [FMA:261956] xref: FMA:261956 is_a: UBERON:0001134 ! skeletal muscle tissue @@ -250854,6 +257070,8 @@ relationship: part_of UBERON:0002383 ! supraspinatus muscle id: UBERON:0004513 name: skeletal muscle tissue of internal intercostal muscle def: "A portion of skeletal muscle tissue that is part of a internal intercostal muscle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:261888 is_a: UBERON:0003898 ! skeletal muscle tissue of trunk intersection_of: UBERON:0001134 ! skeletal muscle tissue @@ -250864,6 +257082,8 @@ relationship: part_of UBERON:0002403 ! internal intercostal muscle id: UBERON:0004514 name: skeletal muscle tissue of transversus thoracis def: "A portion of skeletal muscle tissue that is part of a transversus thoracis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:261892 is_a: UBERON:0003898 ! skeletal muscle tissue of trunk intersection_of: UBERON:0001134 ! skeletal muscle tissue @@ -250875,6 +257095,8 @@ id: UBERON:0004515 name: smooth muscle tissue of bronchiole def: "A portion of smooth muscle tissue that is part of a bronchiole [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:261045 is_a: UBERON:0004233 ! lower respiratory tract smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue @@ -250887,6 +257109,8 @@ id: UBERON:0004516 name: smooth muscle tissue of terminal bronchiole def: "A portion of smooth muscle tissue that is part of a terminal bronchiole [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:261051 is_a: UBERON:0004515 ! smooth muscle tissue of bronchiole intersection_of: UBERON:0001135 ! smooth muscle tissue @@ -250901,6 +257125,8 @@ id: UBERON:0004517 name: smooth muscle tissue of respiratory bronchiole def: "A portion of smooth muscle tissue that is part of a respiratory bronchiole [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:261055 is_a: UBERON:0004515 ! smooth muscle tissue of bronchiole intersection_of: UBERON:0001135 ! smooth muscle tissue @@ -250914,6 +257140,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0004518 name: muscle of vertebral column def: "A muscle that is attached to a vertebra of the vertebral column." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "vertebral column muscle" EXACT [FMA:22594] xref: FMA:22594 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate @@ -250925,6 +257153,8 @@ relationship: attaches_to UBERON:0002412 ! vertebra id: UBERON:0004519 name: muscle of anal triangle def: "Any muscle organ that is part of a anal part of perineum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anal triangle muscle" EXACT [FMA:77304] xref: FMA:77304 is_a: UBERON:0002379 {source="FMA"} ! perineal muscle @@ -250936,6 +257166,8 @@ relationship: part_of UBERON:0006867 ! anal part of perineum id: UBERON:0004520 name: striated muscle tissue of prostate def: "A portion of striated muscle tissue that is part of a prostate gland [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:45716 is_a: UBERON:0001134 ! skeletal muscle tissue is_a: UBERON:0008715 ! muscle tissue of prostate @@ -250947,6 +257179,8 @@ relationship: part_of UBERON:0002367 ! prostate gland id: UBERON:0004521 name: vasculature of muscle organ def: "A vasculature that is part of a muscle organ [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscular organ vasculature" EXACT [FMA:87123] xref: FMA:87123 is_a: UBERON:0006876 ! vasculature of organ @@ -250958,6 +257192,8 @@ relationship: part_of UBERON:0001630 ! muscle organ id: UBERON:0004522 name: vasculature of musculoskeletal system def: "A vasculature that is part of a musculoskeletal system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:239607 is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature @@ -250968,6 +257204,8 @@ relationship: part_of UBERON:0002204 ! musculoskeletal system id: UBERON:0004523 name: papillary muscle of right ventricle def: "A papillary muscle that is part of a right ventricle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004544 xref: FMA:7259 xref: SCTID:244356004 @@ -250980,6 +257218,8 @@ relationship: part_of UBERON:0002080 ! heart right ventricle id: UBERON:0004524 name: papillary muscle of left ventricle def: "A papillary muscle that is part of a left ventricle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001398 xref: FMA:9352 xref: SCTID:244347007 @@ -250992,6 +257232,8 @@ relationship: part_of UBERON:0002084 ! heart left ventricle id: UBERON:0004525 name: cardiac muscle tissue of trabecula carnea of right ventricle def: "A portion of trabecula carnea cardiac muscle tissue that is part of a right ventricle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:84429 is_a: UBERON:0003381 ! cardiac muscle of right ventricle is_a: UBERON:0003452 ! trabecula carnea cardiac muscle tissue @@ -251004,6 +257246,8 @@ relationship: part_of UBERON:0006570 {is_inferred="true", source="https://github id: UBERON:0004526 name: cardiac muscle tissue of trabecula carnea of left ventricle def: "A portion of trabecula carnea cardiac muscle tissue that is part of a left ventricle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:84430 is_a: UBERON:0003382 ! cardiac muscle of left ventricle is_a: UBERON:0003452 ! trabecula carnea cardiac muscle tissue @@ -251018,6 +257262,8 @@ name: alveolar process of maxilla alt_id: UBERON:0001696 def: "The thickened ridge of bone that contains the tooth sockets on the maxilla." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "alveolar margin of maxilla" EXACT [] synonym: "alveolar part of maxilla" EXACT [] @@ -251047,6 +257293,8 @@ property_value: taxon_notes "In humans, the tooth-bearing bones are the maxilla id: UBERON:0004528 name: alveolar ridge of mandible def: "The thickened ridge of bone that contains the tooth sockets on the mandible." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "alveolar arch of mandible" RELATED [FMA:52832] synonym: "alveolar margin of mandible" EXACT [] @@ -251070,6 +257318,8 @@ id: UBERON:0004529 name: anatomical projection def: "A projection or outgrowth of tissue from a larger body or organ." [https://github.com/obophenotype/uberon/issues/39, Wikipedia:Process_(anatomy)] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "anatomical process" BROAD [] synonym: "anatomical protrusion" RELATED [] @@ -251119,6 +257369,8 @@ property_value: external_definition "Anatomical structure that is a natural outg id: UBERON:0004530 name: bony projection def: "Anatomical projection that is composed of bone tissue." [VSAO:wd] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "bone process" EXACT [FMA:75433] synonym: "bony projections" RELATED OMO:0003004 [ZFA:0001637] @@ -251147,6 +257399,8 @@ consider: BSPO:0000007 id: UBERON:0004533 name: left testis def: "A testis that is in the left side of the genitalia [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left testicle" EXACT [MA:0001746] xref: EMAPA:37370 {source="MA:th"} xref: FMA:7212 @@ -251165,6 +257419,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0004534 name: right testis def: "A testis that is in the right side of the genitalia [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "right testicle" EXACT [MA:0001747] xref: EMAPA:37371 {source="MA:th"} xref: FMA:7211 @@ -251185,6 +257441,8 @@ name: cardiovascular system def: "Anatomical system that has as its parts the heart and blood vessels." [BTO:0000088] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -251230,6 +257488,8 @@ id: UBERON:0004536 name: lymph vasculature def: "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." [ZFA:0005105] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "lymph vessels" RELATED OMO:0003004 [ZFA:0005105] synonym: "lymphatic trunks and ducts" EXACT [FMA:63815] @@ -251256,6 +257516,8 @@ id: UBERON:0004537 name: blood vasculature def: "A vascular network consisting of blood vessels." [https://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "blood system" RELATED [] synonym: "blood vascular network" EXACT [] synonym: "blood vessel system" RELATED [] @@ -251276,6 +257538,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0004538 name: left kidney def: "A kidney that is part of a left side of organism [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:36589 xref: FMA:7205 @@ -251295,6 +257559,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0004539 name: right kidney def: "A kidney that is part of a right side of organism [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:36590 xref: FMA:7204 @@ -251313,6 +257579,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero [Term] id: UBERON:0004540 name: proper plantar digital artery +subset: human_subset +subset: mouse_subset synonym: "arteriae digitales plantares propriae" EXACT OMO:0003011 [FMA:71564, FMA:TA] synonym: "arteriae digitales plantares propriae" RELATED OMO:0003011 [Wikipedia:Proper_plantar_digital_arteries] synonym: "plantar digital artery proper" EXACT [] @@ -251331,6 +257599,8 @@ property_value: external_ontology_notes "the MA term, even though plural, repres id: UBERON:0004544 name: epididymis epithelium def: "The layer of secretory cells which lines the epididymis." [MGI:csmith, MP:0004933] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epididymis epithelium" EXACT [FMA:19153] synonym: "epithelium of epididymis" EXACT [FMA:19153] @@ -251352,6 +257622,8 @@ relationship: part_of UBERON:0001301 ! epididymis id: UBERON:0004545 name: external capsule of telencephalon def: "Any of the series of white matter fiber tracts in the brain that run between the most lateral segment of the lentiform nucleus and the claustrum; the white matter of the external capsule contains fibers known as corticocortical association fibers which are responsible for connecting the cerebral cortex to another cortical area; the capsule appears as a thin white sheet of white matter and provides a route for cholinergic fibers from the basal forebrain to the cerebral cortex; it eventually joins the internal capsule around the lentiform nucleus." [MP:0020139] +subset: human_subset +subset: mouse_subset synonym: "brain external capsule" BROAD [MP:0020139] synonym: "capsula externa" RELATED OMO:0003011 [Wikipedia:External_capsule] synonym: "corpus callosum external capsule" RELATED [BAMS:ec] @@ -251379,6 +257651,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Te id: UBERON:0004546 name: cribriform plate def: "A zone of the ethmoid that is received into the ethmoidal notch of the frontal bone and roofs in the nasal cavities. [WP,modified]." [Wikipedia:Cribriform_plate] +subset: human_subset +subset: mouse_subset synonym: "cribiform plate of ethmoid bone" EXACT [Wikipedia:Cribriform_plate] synonym: "ethmoid bone lamina cribrosa" RELATED [BTO:0004141] synonym: "horizontal lamina of ethmoid bone" EXACT [Wikipedia:Cribriform_plate] @@ -251399,6 +257673,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/93/Gr id: UBERON:0004547 name: decidua capsularis def: "The layer of uterine endometrium overlying the implanted chorionic vesicle and facing the uterine cavity." [MP:0012530] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "antimesometrial decidua" RELATED [EMAPA:35271] xref: EMAPA:35271 @@ -251414,6 +257690,8 @@ relationship: part_of UBERON:0002450 ! decidua id: UBERON:0004548 name: left eye def: "An eye that is part of a left side of organism [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "left eyeball" EXACT [FMA:12515] synonym: "left orbital part of face" NARROW [FMA:54450] @@ -251436,6 +257714,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0004549 name: right eye def: "An eye that is part of a right side of organism [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "right eyeball" EXACT [FMA:12514] synonym: "right orbital part of face" NARROW [FMA:54449] @@ -251458,6 +257738,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0004550 name: gastroesophageal sphincter def: "The thick circular layer of smooth gastric musculature encircling the gastroesophageal junction that functions to reduce backflow into the esophagus from the stomach." [ISBN:0-683-40008-8, MP:0010153] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cardiac sphincter" EXACT [MA:0002951, MP:0010153] synonym: "cardiac sphincter" RELATED [Wikipedia:Cardia] @@ -251505,6 +257787,8 @@ consider: FMA:71564 id: UBERON:0004552 name: digital artery def: "An artery that is part of a digit [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37076 {source="MA:th"} xref: MA:0001941 xref: SCTID:181335004 @@ -251519,6 +257803,8 @@ property_value: editor_note "check part_of - do we need term for digit + metacar id: UBERON:0004553 name: forelimb digital artery def: "A digital artery that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "digital artery of manus" EXACT [] synonym: "forelimb digital arteries" EXACT [MA:0001953] synonym: "wing digital artery" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] @@ -251536,6 +257822,8 @@ relationship: part_of UBERON:0002389 {is_inferred="true", source="https://github id: UBERON:0004554 name: hindlimb digital artery def: "A digital artery that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "digital artery of foot" EXACT [FMA:69713] synonym: "hindlimb digital arteries" EXACT [MA:0001964] xref: EMAPA:37214 {source="MA:th"} @@ -251552,6 +257840,8 @@ id: UBERON:0004561 name: proper palmar digital vein comment: Some sources distinguish between the "proper palmar digital veins", which are more distal, and the "common palmar digital veins", which are more proximal. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "common palmar digital venous tributary" EXACT [FMA:22926] synonym: "distal palmar digital vein" EXACT [Wikipedia:Palmar_digital_veins] synonym: "proper palmal vein" EXACT [MA:0002126] @@ -251568,6 +257858,8 @@ relationship: tributary_of UBERON:0001412 {source="FMA/obol"} ! common palmar di id: UBERON:0004562 name: digital vein def: "Any vein containing deoxygenated blood that is located in a finger or toe." [ncithesaurus:Digital_Vein] +subset: human_subset +subset: mouse_subset xref: EMAPA:37141 {source="MA:th"} xref: MA:0002101 xref: NCIT:C53043 @@ -251581,6 +257873,8 @@ property_value: editor_note "check part_of - do we need term for digit + metacar id: UBERON:0004563 name: forelimb digital vein def: "A digital vein that is part of a forelimb." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "forelimb digital veins" EXACT [MA:0002120] synonym: "vein of finger" EXACT [] synonym: "vein of manual digit" EXACT [] @@ -251598,6 +257892,8 @@ relationship: part_of UBERON:0002398 {is_inferred="true", source="https://github id: UBERON:0004564 name: hindlimb digital vein def: "A digital vein that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hindlimb digital veins" EXACT [MA:0002133] synonym: "vein of pedal digit" EXACT [] synonym: "vein of toe" EXACT [] @@ -251614,6 +257910,8 @@ relationship: part_of UBERON:0002387 {is_inferred="true", source="https://github id: UBERON:0004571 name: systemic arterial system def: "The part of the arterial system which carries oxygenated blood away from the heart to the body, and returns deoxygenated blood back to the heart." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Systemic_circulation#Arteries] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "systemic arterial circulatory system" EXACT [FMA:45623] xref: FMA:45623 @@ -251625,7 +257923,8 @@ relationship: part_of UBERON:0004572 ! arterial system id: UBERON:0004572 name: arterial system def: "The part of the cardiovascular system consisting of all arteries." [https://orcid.org/0000-0002-6601-2165] -subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: BTO:0004690 xref: EHDAA2:0000143 @@ -251638,7 +257937,6 @@ xref: VHOG:0000273 is_a: UBERON:0007798 {source="MA"} ! vascular system relationship: has_member UBERON:0001637 ! artery relationship: part_of UBERON:0004535 {source="EHDAA2"} ! cardiovascular system -relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: homology_notes "The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000273", ontology="VHOG", source="DOI:10.1196/annals.1341.002 Bishopric NH, Evolution of the heart from bacteria to man. Annals of the New York Academy of Sciences (2005)", source="http://bgee.unil.ch/"} [Term] @@ -251646,6 +257944,8 @@ id: UBERON:0004573 name: systemic artery def: "An artery of the systemic circulation, which is the part of the cardiovascular system which carries oxygenated blood away from the heart, to the body, and returns deoxygenated blood back to the heart." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Artery#Systemic_arteries] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "systemic arterial subtree" EXACT [FMA:66464] xref: EMAPA:37126 {source="MA:th"} @@ -251661,6 +257961,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0004581 name: systemic venous system def: "The part of the venous system that drains the general body tissues[Kardong]." [ISBN:0073040584, Wikipedia:Systemic_venous_system] +subset: human_subset +subset: mouse_subset synonym: "systemic venous circulatory system" EXACT [FMA:45626] xref: FMA:45626 xref: Wikipedia:Systemic_venous_system @@ -251674,7 +257976,8 @@ property_value: homology_notes "The appearance of Chordata and subsequently the id: UBERON:0004582 name: venous system def: "The part of the cardiovascular system consisting of all venous vessels. In vertebrates with a double circulation, this can be divided into systemic and pulmonary portions." [https://orcid.org/0000-0002-6601-2165] -subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "vein system" EXACT [] xref: BTO:0004692 xref: EHDAA2:0002171 @@ -251687,13 +257990,14 @@ xref: UMLS:C1267406 {source="ncithesaurus:Venous_System"} xref: VHOG:0000277 is_a: UBERON:0007798 {source="MA"} ! vascular system relationship: composed_primarily_of UBERON:0001638 ! vein -relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: homology_notes "The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000277", ontology="VHOG", source="DOI:10.1196/annals.1341.002 Bishopric NH, Evolution of the heart from bacteria to man. Annals of the New York Academy of Sciences (2005)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0004590 name: sphincter muscle def: "A structure, usually a circular muscle, that normally maintains constriction of a natural body passage or orifice and which relaxes as required by normal physiological functioning." [Wikipedia:Sphincter] +subset: human_subset +subset: mouse_subset synonym: "circular muscle" RELATED [] synonym: "sphincter" EXACT [] xref: FMA:75004 @@ -251709,6 +258013,8 @@ name: rib 1 def: "The first rib of the rib cage." [http://orcid.org/0000-0002-6601-2165] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "costa I" EXACT OMO:0003011 [] synonym: "costa prima" RELATED OMO:0003011 [Wikipedia:First_rib] @@ -251734,6 +258040,8 @@ name: rib 2 def: "The second rib of the rib cage." [http://orcid.org/0000-0002-6601-2165] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "costa II" EXACT OMO:0003011 [] synonym: "costa secunda" RELATED OMO:0003011 [Wikipedia:Second_rib] synonym: "costa secunda (II)" EXACT [FMA:7620] @@ -251758,6 +258066,8 @@ name: rib 3 def: "The third rib counting from the top of the rib cage down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Rib_3] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "costa III" EXACT OMO:0003011 [] synonym: "third rib" EXACT [FMA:7638] xref: EMAPA:19531 @@ -251777,6 +258087,8 @@ name: rib 4 def: "The fourth rib counting from the top of the rib cage down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Rib_4] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "costa IV" EXACT OMO:0003011 [] synonym: "fourth rib" EXACT [FMA:7749] xref: EMAPA:19532 @@ -251796,6 +258108,8 @@ name: rib 5 def: "The fifth rib counting from the top of the rib cage down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Rib_5] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "costa V" EXACT OMO:0003011 [] synonym: "fifth rib" EXACT [FMA:7776] xref: EMAPA:19533 @@ -251815,6 +258129,8 @@ name: rib 6 def: "The sixth rib counting from the top of the rib cage down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Rib_6] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "costa VI" EXACT OMO:0003011 [] synonym: "sixth rib" EXACT [FMA:8147] xref: EMAPA:19534 @@ -251834,6 +258150,8 @@ name: rib 7 def: "The seventh rib counting from the top of the rib cage down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Rib_7] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "costa VII" EXACT OMO:0003011 [] synonym: "seventh rib" EXACT [FMA:7830] xref: EMAPA:19535 @@ -251853,6 +258171,8 @@ name: rib 9 def: "The ninth rib counting from the top of the rib cage down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Rib_9] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "costa IX" EXACT OMO:0003011 [] synonym: "lower false rib" NARROW [NCBITaxon:9606, PMCID:PMC1327870] synonym: "ninth rib" EXACT [FMA:8337] @@ -251874,6 +258194,8 @@ name: rib 10 def: "The tenth rib has only a single articular facet on its head. [WP,unvetted]." [Wikipedia:Tenth_rib] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "costa X" EXACT OMO:0003011 [] synonym: "tenth rib" EXACT [FMA:8418] xref: EMAPA:19538 @@ -251897,6 +258219,8 @@ name: rib 11 def: "The eleventh rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The eleventh has a slight angle and a shallow costal groove. [WP,unvetted]." [Wikipedia:Eleventh_rib] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "costa XI" EXACT OMO:0003011 [] synonym: "eleventh rib" EXACT [FMA:8499] xref: EMAPA:19539 @@ -251919,6 +258243,8 @@ name: rib 12 def: "In humans: The twelfth rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The twelfth has angle nor costal groove; it is much shorter than the eleventh rib, and its head is inclined slightly downward. Sometimes the twelfth rib is even shorter than the first rib. [WP,unvetted]." [Wikipedia:Twelfth_rib] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "costa XII" EXACT OMO:0003011 [] synonym: "twelfth rib" EXACT [FMA:8515] @@ -251942,6 +258268,8 @@ name: mammalian cervical vertebra 3 def: "The third of the seven cervical vertebrae[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:C3_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "C3 vertebra" EXACT [FMA:12521] synonym: "cervical vertebra 3" EXACT [MA:0001423] @@ -251968,6 +258296,8 @@ name: mammalian cervical vertebra 4 def: "The fourth of the seven cervical vertebrae[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:C4_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "C4 vertebra" EXACT [FMA:12522] synonym: "cervical vertebra 4" EXACT [MA:0001424] @@ -251991,6 +258321,8 @@ name: mammalian cervical vertebra 5 def: "The fifth of the seven cervical vertebrae[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:C5_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "C5 vertebra" EXACT [FMA:12523] synonym: "cervical vertebra 5" EXACT [MA:0001425] @@ -252014,6 +258346,8 @@ name: mammalian cervical vertebra 6 def: "The sixth of the seven cervical vertebrae[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:C6_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "C6 vertebra" EXACT [FMA:12524] synonym: "cervical vertebra 6" EXACT [MA:0001426] @@ -252037,6 +258371,8 @@ name: mammalian cervical vertebra 7 def: "Vertebra prominens is the proper name for the seventh cervical vertebra. The most distinctive characteristic of this vertebra is the existence of a long and prominent spinous process which is palpable from the skin surface, hence the name. This spinous process is thick, nearly horizontal in direction, not bifurcated, but terminating in a tubercle to which the lower end of the ligamentum nuchae is attached. The seventh cervical vertebra (C7) has the most prominent spinous process only in about 70% of people; in the remainder, either C6 or T1 (the first thoracic vertebra) will be the most prominent. The transverse processes are of considerable size, their posterior roots are large and prominent, while the anterior are small and faintly marked; the upper surface of each has usually a shallow sulcus for the eighth spinal nerve, and its extremity seldom presents more than a trace of bifurcation. The foramen transversarium may be as large as that in the other cervical vertebrae, but is generally smaller on one or both sides; occasionally it is double, sometimes it is absent. On the left side it occasionally gives passage to the vertebral artery; more frequently the vertebral vein traverses it on both sides; but the usual arrangement is for both artery and vein to pass in front of the transverse process, and not through the foramen. Sometimes the anterior root of the transverse process attains a large size and exists as a separate bone, which is known as a cervical rib." [Wikipedia:Vertebra_prominens] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "C7 vertebra" EXACT [FMA:12525] synonym: "cervical vertebra 7" EXACT [MA:0001427] synonym: "prominent vertebra" EXACT [FMA:12525] @@ -252063,6 +258399,8 @@ name: lumbar vertebra 1 def: "The first lumbar vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:L1_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "first lumbar vertebra" EXACT [FMA:13072] synonym: "L1 vertebra" EXACT [FMA:13072] xref: EMAPA:19472 @@ -252083,6 +258421,8 @@ name: lumbar vertebra 2 def: "The second lumbar vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:L2_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "L2 vertebra" EXACT [FMA:13073] synonym: "second lumbar vertebra" EXACT [FMA:13073] @@ -252105,6 +258445,8 @@ name: lumbar vertebra 3 def: "The third lumbar vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:L3_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "L3 vertebra" EXACT [FMA:13074] synonym: "third lumbar vertebra" EXACT [FMA:13074] @@ -252127,6 +258469,8 @@ name: lumbar vertebra 4 def: "The fourth lumbar vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:L4_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "fourth lumbar vertebra" EXACT [FMA:13075] synonym: "L4 vertebra" EXACT [FMA:13075] xref: EMAPA:19572 @@ -252147,6 +258491,8 @@ name: lumbar vertebra 5 def: "The fifth lumbar vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:L5_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fifth lumbar vertebra" EXACT [FMA:13076] synonym: "L5 vertebra" EXACT [FMA:13076] @@ -252166,6 +258512,8 @@ property_value: curator_notes "elements are to be defined spatially/topologicall id: UBERON:0004622 name: sacral vertebra 1 subset: defined_by_ordinal_series +subset: human_subset +subset: mouse_subset synonym: "first sacral segment" EXACT [FMA:13077] synonym: "first sacral vertebra" EXACT [FMA:13077] synonym: "first segment of sacrum" EXACT [FMA:13077] @@ -252183,6 +258531,8 @@ property_value: curator_notes "elements are to be defined spatially/topologicall id: UBERON:0004623 name: sacral vertebra 2 subset: defined_by_ordinal_series +subset: human_subset +subset: mouse_subset synonym: "S2 vertebra" EXACT [FMA:13078] synonym: "second sacral segment" EXACT [FMA:13078] synonym: "second sacral vertebra" EXACT [FMA:13078] @@ -252200,6 +258550,8 @@ property_value: curator_notes "elements are to be defined spatially/topologicall id: UBERON:0004624 name: sacral vertebra 3 subset: defined_by_ordinal_series +subset: human_subset +subset: mouse_subset synonym: "S3 vertebra" EXACT [FMA:13079] synonym: "third sacral segment" EXACT [FMA:13079] synonym: "third sacral vertebra" EXACT [FMA:13079] @@ -252217,6 +258569,8 @@ property_value: curator_notes "elements are to be defined spatially/topologicall id: UBERON:0004625 name: sacral vertebra 4 subset: defined_by_ordinal_series +subset: human_subset +subset: mouse_subset synonym: "fourth sacral segment" EXACT [FMA:13080] synonym: "fourth sacral vertebra" EXACT [FMA:13080] synonym: "fourth segment of sacrum" EXACT [FMA:13080] @@ -252236,6 +258590,8 @@ name: thoracic vertebra 1 def: "The first thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T1_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "first dorsal vertebra" EXACT [FMA:9165] synonym: "first thoracic vertebra" EXACT [FMA:9165] synonym: "T1 vertebra" EXACT [FMA:9165] @@ -252256,6 +258612,8 @@ name: thoracic vertebra 2 def: "The second thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T2_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "second dorsal vertebra" EXACT [FMA:9187] synonym: "second thoracic vertebra" EXACT [FMA:9187] synonym: "T2 vertebra" EXACT [FMA:9187] @@ -252277,6 +258635,8 @@ name: thoracic vertebra 3 def: "The third thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T3_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "T3 vertebra" EXACT [FMA:9209] synonym: "third dorsal vertebra" EXACT [FMA:9209] synonym: "third thoracic vertebra" EXACT [FMA:9209] @@ -252298,6 +258658,8 @@ name: thoracic vertebra 4 def: "The fourth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T4_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "fourth dorsal vertebra" EXACT [FMA:9248] synonym: "fourth thoracic vertebra" EXACT [FMA:9248] synonym: "T4 vertebra" EXACT [FMA:9248] @@ -252319,6 +258681,8 @@ name: thoracic vertebra 5 def: "The fifth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T5_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "fifth dorsal vertebra" EXACT [FMA:9922] synonym: "fifth thoracic vertebra" EXACT [FMA:9922] synonym: "T5 vertebra" EXACT [FMA:9922] @@ -252340,6 +258704,8 @@ name: thoracic vertebra 6 def: "The sixth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T6_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "sixth dorsal vertebra" EXACT [FMA:9945] synonym: "sixth thoracic vertebra" EXACT [FMA:9945] synonym: "T6 vertebra" EXACT [FMA:9945] @@ -252361,6 +258727,8 @@ name: thoracic vertebra 7 def: "The seventh thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T7_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "seventh dorsal vertebra" EXACT [FMA:9968] synonym: "seventh thoracic vertebra" EXACT [FMA:9968] synonym: "T7 vertebra" EXACT [FMA:9968] @@ -252382,6 +258750,8 @@ name: thoracic vertebra 9 def: "The ninth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T9_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "Ninth dorsal vertebra" EXACT [FMA:10014] synonym: "ninth thoracic vertebra" EXACT [FMA:10014] synonym: "T9 vertebra" EXACT [FMA:10014] @@ -252403,6 +258773,8 @@ name: thoracic vertebra 10 def: "The tenth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T10_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "T10 vertebra" EXACT [FMA:10037] synonym: "tenth dorsal vertebra" EXACT [FMA:10037] synonym: "tenth thoracic vertebra" EXACT [FMA:10037] @@ -252424,6 +258796,8 @@ name: thoracic vertebra 11 def: "The eleventh thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T11_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "eleventh dorsal vertebra" EXACT [FMA:10059] synonym: "eleventh thoracic vertebra" EXACT [FMA:10059] synonym: "T11 vertebra" EXACT [FMA:10059] @@ -252445,6 +258819,8 @@ name: thoracic vertebra 12 def: "The twelfth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T12_Vertebra] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "T12 vertebra" EXACT [FMA:10081] synonym: "twelfth dorsal vertebra" EXACT [FMA:10081] synonym: "twelfth thoracic vertebra" EXACT [FMA:10081] @@ -252464,6 +258840,8 @@ property_value: curator_notes "elements are to be defined spatially/topologicall id: UBERON:0004637 name: otic capsule def: "The capsule surrounding the inner ear mechanism." [http://www.biology-online.org/dictionary/Otic_capsule] +subset: human_subset +subset: mouse_subset synonym: "auditory capsule" RELATED [VHOG:0000854] synonym: "otic capsule" EXACT [ZFA:0001500] synonym: "otic capsule element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] @@ -252495,6 +258873,8 @@ id: UBERON:0004638 name: blood vessel endothelium def: "An endothelium that lines the blood vasculature. Other endothelia may line lymph vessels, the heart." [https://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core xref: BTO:0000766 @@ -252516,6 +258896,8 @@ id: UBERON:0004639 name: renal afferent arteriole def: "The blood vessels that branch from the kidney interlobular artery, convey blood to the glomerular capillaries, and play an important role in the regulation of blood pressure as a part of the tubuloglomerular feedback mechanism." [ISBN:0-683-40008-8, MGI:csmith, MP:0011312] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "afferent arteriole" EXACT [MA:0002579] @@ -252549,6 +258931,8 @@ id: UBERON:0004640 name: renal efferent arteriole def: "The blood vessels that convey blood from the glomerulocapillary network to the capillary bed of the proximal convoluted tubule." [ISBN:0-683-40008-8, MGI:csmith, MP:0011313] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "arteriola glomerularis efferens capsulae renalis" RELATED OMO:0003011 [Wikipedia:Efferent_arteriole] @@ -252580,6 +258964,8 @@ id: UBERON:0004641 name: spleen capsule def: "The connective tissue that surrounds the spleen." [MGI:cwg, MP:0002227] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "capsula splenica" EXACT OMO:0003011 [FMA:15849, FMA:TA] synonym: "capsule of spleen" EXACT [FMA:15849] @@ -252607,6 +258993,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0004642 name: third ventricle ependyma def: "An ependyma that is part of a third ventricle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "3rd ventricle ependyma" EXACT [MA:0000882] synonym: "ependyma of third ventricle" EXACT [MA:0000882] xref: EMAPA:35100 @@ -252622,6 +259010,8 @@ relationship: part_of UBERON:0002286 ! third ventricle id: UBERON:0004643 name: lateral ventricle ependyma def: "An ependyma that is part of a lateral ventricle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ependyma of lateral ventricle" EXACT [FMA:242825] xref: EMAPA:35488 xref: FMA:242825 @@ -252638,6 +259028,8 @@ relationship: part_of UBERON:0002285 ! telencephalic ventricle id: UBERON:0004644 name: fourth ventricle ependyma def: "An ependyma that is part of a fourth ventricle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "4th ventricle ependyma" RELATED [MA:0000986] synonym: "ependyma of fourth ventricle" EXACT [FMA:242835] xref: EMAPA:35355 @@ -252656,6 +259048,8 @@ id: UBERON:0004645 name: urinary bladder urothelium def: "The epithelial lining of the luminal space of the urinary bladder." [MP:0000540] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bladder transitional cell epithelium" EXACT [FMA:15936] synonym: "epithelium of bladder" RELATED [EMAPA:28601] @@ -252688,6 +259082,8 @@ id: UBERON:0004646 name: infraorbital artery def: "The infraorbital artery is an artery in the head that runs in the maxilla, emerging through the infraorbital foramen, just under the orbit of the eye. [WP,unvetted]." [Wikipedia:Infraorbital_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "a. infraorbitalis" RELATED OMO:0003011 [Wikipedia:Infraorbital_artery] synonym: "infra-orbital artery" EXACT [FMA:49767] xref: EMAPA:37090 {source="MA:th"} @@ -252708,6 +259104,8 @@ id: UBERON:0004647 name: liver lobule def: "The polygonal structure of the liver that consists of hepatocytes radiating outward from a hepatic vein." [ISBN:0-683-40008-8, MP:0008987] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hepatic lobule" EXACT [FMA:14471] synonym: "lobules of liver" RELATED OMO:0003004 [Wikipedia:Lobules_of_liver] @@ -252733,6 +259131,8 @@ property_value: curator_notes "should not be confused with the anatomic lobes of id: UBERON:0004648 name: esophagus muscularis mucosa def: "A muscularis mucosa that is part of a esophagus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "esophagus muscularis" RELATED [] synonym: "esophagus muscularis mucosae" EXACT [] synonym: "lamina muscularis mucosae (oesphagus)" EXACT OMO:0003011 [FMA:63059, FMA:TA] @@ -252755,6 +259155,8 @@ relationship: part_of UBERON:0002469 ! esophagus mucosa id: UBERON:0004649 name: sphenoid bone pterygoid process def: "The process projecting downward from either side of the sphenoid bone, in vertebrates divided into two plates, an inner and an outer (sometimes called the lateral and medial); the posterior nares pass through the space, called the pterygoid fossa, between the processes." [ISBN:0-683-40008-8, MP:0004452] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "processus pterygoideus" EXACT [FMA:54682] synonym: "processus pterygoideus ossis sphenoidalis" EXACT OMO:0003011 [FMA:54682, FMA:TA] @@ -252787,6 +259189,8 @@ property_value: external_definition "Process that projects from posterior margin id: UBERON:0004650 name: tongue keratinized epithelium def: "A keratinized stratified squamous epithelium that is part of a tongue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "keratinized epithelium of tongue" EXACT [FMA:74865] xref: FMA:74865 xref: MA:0002787 @@ -252800,6 +259204,8 @@ relationship: part_of UBERON:0001723 ! tongue id: UBERON:0004651 name: scapula spine def: "The triangular ridge on the dorsal aspect of the scapula which separates the supra- from the infraspinatous fossa and where the trapezius and deltoid muscles are attached." [ISBN:0-683-40008-8, MP:0004347] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "scapular spine" RELATED [FMA:13453, MA:0002806] synonym: "spina scapulae" RELATED OMO:0003011 [Wikipedia:Spine_of_scapula] @@ -252819,6 +259225,8 @@ property_value: homology_notes "the cleithrum, the major shoulder bone of extinc id: UBERON:0004652 name: humerus diaphysis def: "The body or shaft of the humerus is almost cylindrical in the upper half of its extent, prismatic and flattened below, and has three borders and three surfaces." [Wikipedia:Body_of_humerus] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "body of humerus" EXACT [FMA:13305] synonym: "body of the humerus" RELATED [Wikipedia:Body_of_humerus] @@ -252845,6 +259253,8 @@ id: UBERON:0004654 name: temporal process of zygomatic bone def: "The temporal process of the zygomatic bone, directed backward and medialward, is concave, presenting medially a rough, triangular area, for articulation with the maxilla, and laterally a smooth, concave surface, the upper part of which forms the anterior boundary of the temporal fossa, the lower a part of the infratemporal fossa. Near the center of this surface is the zygomaticotemporal foramen for the transmission of the zygomaticotemporal nerve." [Wikipedia:Temporal_process_of_the_zygomatic_bone] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "facies temporalis ossis zygomatici" EXACT OMO:0003011 [Wikipedia:Temporal_process_of_the_zygomatic_bone] synonym: "processus temporalis (os zygomaticum)" EXACT [FMA:52904] synonym: "processus temporalis ossis zygomatici" EXACT OMO:0003011 [FMA:52904, FMA:TA] @@ -252866,6 +259276,8 @@ id: UBERON:0004655 name: zygomatic process of temporal bone alt_id: UBERON:0004653 def: "The zygomatic process of the temporal bone is a long, arched process projecting from the lower part of the squamous portion of the temporal bone. It articulates with the zygomatic bone. This process is at first directed lateralward, its two surfaces looking upward and downward; it then appears as if twisted inward upon itself, and runs forward, its surfaces now looking medialward and lateralward." [Wikipedia:Zygomatic_process_of_temporal_bone] +subset: human_subset +subset: mouse_subset synonym: "processus zygomaticus" EXACT [FMA:52886] synonym: "processus zygomaticus ossis temporalis" EXACT OMO:0003011 [Wikipedia:Zygomatic_process_of_temporal_bone] synonym: "temporal bone zygomatic process" EXACT [MA:0002811] @@ -252886,6 +259298,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/96/Gr id: UBERON:0004657 name: mandible condylar process def: "Articular part of the mandible bone." [MFMO:0000056] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "condylar process of mandible" EXACT [FMA:52836] synonym: "condyle of mandible" RELATED [Wikipedia:Condyloid_process] @@ -252914,6 +259328,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b1/Pr [Term] id: UBERON:0004658 name: mandible head +subset: human_subset +subset: mouse_subset synonym: "head of mandible" EXACT [FMA:59331] synonym: "mandibular head" EXACT [FMA:59331] xref: FMA:59331 @@ -252926,6 +259342,8 @@ relationship: part_of UBERON:0004657 ! mandible condylar process [Term] id: UBERON:0004659 name: mandible neck +subset: human_subset +subset: mouse_subset synonym: "mandibular neck" EXACT [FMA:59332] synonym: "neck of mandible" EXACT [FMA:59332] xref: FMA:59332 @@ -252940,6 +259358,8 @@ relationship: part_of UBERON:0004657 ! mandible condylar process id: UBERON:0004660 name: mandible coronoid process def: "A dorsal process on the lower jaw associated with muscle attachment. It may be formed by a separate coronoid bone or as a process of the dentary. In most living (and many extinct) mammals, the most dorsal of the three proximal processes of the jaw." [http://palaeos.com/vertebrates/glossary/glossaryCh.html#Coronoid%20process, Wikipedia:Coronoid_process_of_the_mandible] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "coronoid" BROAD [AAO:0000103] synonym: "coronoid process of mandible" EXACT [FMA:52833] @@ -252961,6 +259381,8 @@ property_value: external_ontology_notes "TAO:0001673 coronoid process, a bony pr [Term] id: UBERON:0004661 name: mandible temporal crest +subset: human_subset +subset: mouse_subset synonym: "crista temporalis (mandibulae)" EXACT [FMA:59484] synonym: "crista temporalis mandibulae" EXACT OMO:0003011 [FMA:59484, FMA:TA] synonym: "mandibular temporal crest" RELATED [FMA:59484] @@ -252977,6 +259399,8 @@ relationship: part_of UBERON:0001684 ! mandible id: UBERON:0004662 name: vertebra lamina def: "Two broad plates directed dorsomedially from the pedicles; these fuse at the dorsal midline, and complete the dorsal wall of the vertebral foramen." [ISBN:0-683-40008-8, MGI:csmith, MP:0004605] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lamina arcus vertebrae" EXACT OMO:0003011 [FMA:11951, FMA:TA] synonym: "lamina of vertebra" EXACT [FMA:11951] @@ -252997,6 +259421,8 @@ property_value: external_definition "Paired plates that form the neural arch. Th id: UBERON:0004663 name: aorta wall def: "An anatomical wall that is part of an aorta, enclosing the luminal space." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "aortic wall" EXACT [FMA:14156] synonym: "wall of aorta" EXACT [FMA:14156] @@ -253013,6 +259439,8 @@ relationship: part_of UBERON:0000947 ! aorta id: UBERON:0004664 name: aorta tunica adventitia def: "The outermost layer of the aorta wall, containing connective tissue and collagen and elastic fibers." [ISBN:0-683-40008-8, MP:0009871] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "tunica adventitia of aorta" EXACT [FMA:14283] xref: EMAPA:35136 @@ -253030,6 +259458,8 @@ relationship: part_of UBERON:0004663 ! aorta wall id: UBERON:0004665 name: muscular coat of seminal vesicle def: "A muscular coat that is part of a seminal vesicle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscle layer of seminal vesicle" EXACT [FMA:19404] synonym: "muscular coat of seminal gland" EXACT [FMA:19404] synonym: "muscular layer of seminal gland" EXACT [FMA:19404] @@ -253050,6 +259480,8 @@ id: UBERON:0004666 name: interventricular septum membranous part alt_id: UBERON:0004143 def: "The membranous portion of the wall between the two lower chambers of the heart." [MP:0008823] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cardiac ventricular membranous septum" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "membranous interventricular septum" EXACT [FMA:7135] @@ -253083,6 +259515,8 @@ id: UBERON:0004667 name: interventricular septum muscular part alt_id: UBERON:0004144 def: "The muscular portion of the wall between the two lower chambers of the heart." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Interventricular_septum#Portions] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cardiac ventricular muscular septum" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "muscular interventricular septum" EXACT [FMA:7134] @@ -253111,6 +259545,8 @@ property_value: external_definition "The muscular septum is the lower part of th id: UBERON:0004668 name: fourth ventricle aperture def: "One of: the 4th ventricle median or lateral apertures." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "aperture of 4th ventricle" EXACT [] synonym: "aperture of fourth ventricle" EXACT [FMA:242766] xref: FMA:242766 @@ -253125,6 +259561,8 @@ relationship: part_of UBERON:0002422 ! fourth ventricle id: UBERON:0004670 name: ependyma def: "The thin epithelium-like membrane composed of ependymal cells that lines the ventricular system of the brain and the spinal cord." [http://orcid.org/0000-0002-6601-2165, ISBN:0387949542, Wikipedia:Ependyma] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ependyma of neuraxis" EXACT [FMA:242791] synonym: "ependymal epithelium" EXACT [BTO:0000401] @@ -253158,6 +259596,8 @@ id: UBERON:0004671 name: gyrus rectus def: "The portion of the frontal lobe medial to the medial orbital gyrus is named the gyrus rectus (or straight gyrus), and is continuous with the superior frontal gyrus on the medial surface. A specific function for the gyrus rectus has not yet been elucidated." [Wikipedia:Straight_gyrus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "gyrus rectus" EXACT [BIRNLEX:1103] synonym: "medial part of gyri orbitales" EXACT [FMA:61893] synonym: "rectal gyrus" EXACT [FMA:61893] @@ -253183,6 +259623,8 @@ id: UBERON:0004672 name: posterior horn lateral ventricle def: "Part of the lateral ventricle that extends posteriorly into the occipital lobe." [BIRNLEX:1297] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cornu occipitale (ventriculi lateralis)" EXACT OMO:0003011 [FMA:83700, FMA:TA] synonym: "cornu occipitale ventriculi lateralis" EXACT OMO:0003011 [FMA:83700, FMA:TA] synonym: "cornu posterius (ventriculi lateralis)" EXACT OMO:0003011 [FMA:83700, FMA:TA] @@ -253212,6 +259654,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0004673 name: trigeminal nerve root def: "A nerve root that extends_fibers_into a trigeminal nerve." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "descending trigeminal root" RELATED [TAO:0000192] synonym: "radix descendens nervi trigemini" EXACT OMO:0003011 [ZFA:0000192] synonym: "root of trigeminal nerve" EXACT [FMA:52610] @@ -253237,6 +259681,8 @@ property_value: editor_note "TODO - check ZFA" xsd:string id: UBERON:0004674 name: facial nerve root def: "A nerve root that extends_fibers_into a facial nerve." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "central part of facial nerve" EXACT [FMA:53418] synonym: "facial nerve fibers" EXACT [FMA:53418] synonym: "facial nerve or its root" RELATED [BAMS:7n] @@ -253264,6 +259710,8 @@ id: UBERON:0004675 name: hypoglossal nerve root alt_id: UBERON:0022760 def: "A nerve root that extends_fibers_into a hypoglossal nerve." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "central part of hypoglossal nerve" EXACT [FMA:72632] synonym: "central part of hypoglossal nerve" RELATED [BIRNLEX:1288] synonym: "fibrae nervi hypoglossi" EXACT OMO:0003011 [FMA:72632, FMA:TA] @@ -253295,6 +259743,8 @@ relationship: part_of UBERON:0001896 ! medulla oblongata id: UBERON:0004676 name: spinal cord lateral horn def: "A triangular field that is a lateralward projection of the postero-lateral part of the anterior column[WP, modified by cjm]." [Wikipedia:Lateral_horn_of_spinal_cord] +subset: human_subset +subset: mouse_subset synonym: "columna grisea intermedia medullare spinalis" EXACT OMO:0003011 [FMA:256536, FMA:TA] synonym: "cornu laterale medullae spinalis" RELATED OMO:0003011 [Wikipedia:Lateral_horn_of_spinal_cord] synonym: "intermediate gray column of spinal cord" EXACT [FMA:256536] @@ -253324,6 +259774,8 @@ property_value: editor_note "TODO - check relationship to spinal cord lateral co id: UBERON:0004677 name: spinal cord gray commissure def: "The band of grey substance spanning the midline of the spinal cord that surrounds the central canal." [ISBN:0-683-40008-8, MP:0009696] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "area spinalis X" EXACT OMO:0003011 [FMA:68871, FMA:TA] synonym: "central gelatinous substance" RELATED [NeuroNames:1649] @@ -253366,6 +259818,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Me [Term] id: UBERON:0004678 name: apex of spinal cord dorsal horn +subset: human_subset +subset: mouse_subset synonym: "apex columnae posterioris" EXACT OMO:0003011 [FMA:256700, FMA:TA] synonym: "apex cornu posterioris medullae spinalis" EXACT OMO:0003011 [FMA:256700, FMA:TA] synonym: "apex of dorsal gray column" EXACT [FMA:256700] @@ -253384,6 +259838,8 @@ is_a: UBERON:0002315 ! gray matter of spinal cord id: UBERON:0004679 name: dentate gyrus molecular layer def: "The molecular layer of the dentate gyrus that is bounded by the pial surface superficially and the dentate gyrus granule cell layer deep. It is divided into 2 or more sublayers." [BIRNLEX:4127] +subset: human_subset +subset: mouse_subset synonym: "dentate gyrus molecular layer" EXACT [BIRNLEX:4127] synonym: "molecular layer of dentate gyrus" EXACT [FMA:83677] synonym: "molecular layer of the dentate gyrus" RELATED [BAMS:Mol] @@ -253408,6 +259864,8 @@ relationship: immediately_deep_to UBERON:0002361 ! pia mater id: UBERON:0004680 name: body of fornix def: "Part of fornix adjacent to the crura where they join together at the midline underneath the corpus callosum." [BIRNLEX:739] +subset: human_subset +subset: mouse_subset synonym: "body of fornix" EXACT [BIRNLEX:739] synonym: "body of fornix of forebrain" EXACT [FMA:61968] synonym: "column of fornix" EXACT [FMA:61968] @@ -253439,6 +259897,8 @@ property_value: external_definition "The columns (anterior pillars; fornicolumns id: UBERON:0004681 name: vestibular system def: "The sensory system for the sense of balance." [NLXANAT:090819] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "equilibrioception system" NARROW [] synonym: "vestibular organ system" EXACT [FMA:7193] @@ -253463,6 +259923,8 @@ property_value: external_ontology_notes "FMA and NIF have no part information fo id: UBERON:0004682 name: corona radiata of neuraxis def: "Fan shaped white matter mass comprised of afferent and efferent fibers from the cerebral cortex arranged in radially arrayed bundles, converging towards the internal capsule (Carpenter, Core Text of Neuroanatomy, 3rd ed, 1985, pg. 30; Heimer, The Human Brain and Spinal Cord, 2nd ed., 1995, pg 84)." [NLXANAT:090903] +subset: human_subset +subset: mouse_subset synonym: "corona radiata" EXACT [NLXANAT:090903] xref: DHBA:12030 xref: FMA:18661 @@ -253477,6 +259939,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/26/Gr id: UBERON:0004683 name: parasubiculum def: "A transitional zone between the presubiculum and the entorhinal area in the mouse (Paxinos-2001), the rat (Swanson-1998) and the primate (Zilles-1990). Defined on the basis of cytoarchitecture, it is more similar to the presubiculum than to the entorhinal area (Zilles-1990). (from Brain Info)." [NLXANAT:091002] +subset: human_subset +subset: mouse_subset synonym: "parasubicular area" EXACT [NLXANAT:091002] synonym: "parasubicular cortex" RELATED [DHBA:10316] synonym: "parasubicular cortex (parasubiculum)" EXACT [DHBA:10316] @@ -253504,6 +259968,8 @@ id: UBERON:0004684 name: raphe nuclei def: "The raphe nuclei are thin plates of cells in and immediately adjacent to the sagittal plane." [https://sourceforge.net/tracker/?func=detail&aid=3248146&group_id=36855&atid=440764, NLXANAT:20090205] comment: we treat NR obscurus, NR magnus etc as parts of the raphe nuclei. This is consistent with treatment in FMA, where the class is 'set of raphe nuclei' +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "nuclei raphes" EXACT OMO:0003011 [FMA:84017, FMA:TA] synonym: "nuclei raphes" RELATED OMO:0003011 [Wikipedia:Raphe_nuclei] @@ -253543,6 +260009,8 @@ consider: NLXANAT:20090308 id: UBERON:0004686 name: gastro-splenic ligament def: "Peritoneum connecting the greater curvature of stomach with the hilum of the spleen[umich]. part of the greater omentum; derived from the dorsal mesogastrium in the embryo." [http://anatomy.med.umich.edu/gastrointestinal_system/stomach_tables.html, Wikipedia:Gastrosplenic_ligament] +subset: human_subset +subset: mouse_subset synonym: "gastrolienal ligament" EXACT [FMA:16517] synonym: "gastrosplenc ligament" EXACT [FMA:16517] synonym: "gastrosplenic ligament" EXACT [FMA:16517] @@ -253573,6 +260041,8 @@ id: UBERON:0004687 name: lieno-renal ligament def: "Peritoneum that attaches the spleen to the posterior abdominal wall over the left kidney. develops from the dorsal mesogastrium of the embryo[umich]." [http://anatomy.med.umich.edu/gastrointestinal_system/peritoneum_tables.html, Wikipedia:Splenorenal_ligament] comment: Multiple sources support greater omentum assignment. E.g. http://medical-dictionary.thefreedictionary.com/splenorenal+ligament. We change the MA part_of assignment to develops_from +subset: human_subset +subset: mouse_subset synonym: "lienorenal ligament" EXACT [FMA:16522] synonym: "ligamentum lienorenale" EXACT OMO:0003011 [FMA:16522, FMA:TA] synonym: "ligamentum splenorenale" EXACT OMO:0003011 [FMA:16522, FMA:TA] @@ -253599,6 +260069,8 @@ id: UBERON:0004688 name: costo-cervical trunk def: "The costocervical trunk arises from the upper and back part of the subclavian artery, behind the scalenus anterior on the right side, and medial to that muscle on the left side. Passing backward, it splits into the deep cervical artery and the supreme intercostal artery (or the Highest intercostal artery), which descends behind the pleura in front of the necks of the first and second ribs, and anastomoses with the first aortic intercostal (3rd posterior intercostal artery). As it crosses the neck of the first rib it lies medial to the anterior division of the first thoracic nerve, and lateral to the first thoracic ganglion of the sympathetic trunk. In the first intercostal space, it gives off a branch which is distributed in a manner similar to the distribution of the aortic intercostals. The branch for the second intercostal space usually joins with one from the highest aortic intercostal artery. This branch is not constant, but is more commonly found on the right side; when absent, its place is supplied by an intercostal branch from the aorta. Each intercostal gives off a posterior branch which goes to the posterior vertebral muscles, and sends a small spinal branch through the corresponding intervertebral foramen to the medulla spinalis and its membranes. [WP,unvetted]." [Wikipedia:Costocervical_trunk] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "costocervical trunk" EXACT [FMA:10636] synonym: "truncus costocervicalis" RELATED OMO:0003011 [Wikipedia:Costocervical_trunk] synonym: "trunk of costocervical artery" EXACT [FMA:10636] @@ -253618,6 +260090,8 @@ id: UBERON:0004689 name: naso-frontal vein def: "The nasofrontal vein is a vein in the eye which drains to the superior ophthalmic vein." [Wikipedia:Nasofrontal_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "nasofrontal vein" EXACT [FMA:51729] xref: EMAPA:37227 {source="MA:th"} xref: FMA:51729 @@ -253635,6 +260109,8 @@ relationship: tributary_of UBERON:0005486 {source="FMA/obol"} ! venous dural sin id: UBERON:0004690 name: pancreaticoduodenal vein def: "A vein running parallel to the superior and inferior pancreatico-duodenal arteries that drains blood from the pancreas and duodenum into the superior mesenteric or portal veins." [ncithesaurus:Pancreatico-Duodenal_Vein] +subset: human_subset +subset: mouse_subset synonym: "pancreatico-duodenal vein" EXACT [MA:0002190] synonym: "pancreaticoduodenal vein" EXACT [FMA:15398] synonym: "Superior posterior pancreaticoduodenal vein" EXACT [FMA:15398] @@ -253654,6 +260130,8 @@ relationship: tributary_of UBERON:0001138 {source="FMA/obol"} ! superior mesente id: UBERON:0004691 name: bulbourethral gland secretion def: "A bodily secretion that is produced by a bulbourethral gland." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "bulbo-urethral gland secretion" EXACT [FMA:62968] synonym: "pre-ejaculate" EXACT [Wikipedia:Pre-ejaculate] synonym: "secretion of bulbo-urethral gland" EXACT [FMA:62968] @@ -253675,6 +260153,8 @@ property_value: function_notes "helps to lubricate the urethra for spermatozoa t id: UBERON:0004692 name: external naris epithelium def: "An epithelium that is part of an external naris [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:18596 xref: MA:0001321 is_a: UBERON:0019306 ! nose epithelium @@ -253686,9 +260166,11 @@ relationship: part_of UBERON:0005928 ! external naris [Term] id: UBERON:0004693 name: Peyer's patch epithelium -def: "The specialized epithelium of the Peyer's patch." [ISBN:0-8153-1691-7, MGI:cwg, MP:0002388] +def: "The specialized epithelial layer covering the entire Peyer's patch, including both the follicular and interfollicular areas and forming part of the gut-associated lymphoid tissue." [ISBN:0-8153-1691-7, MGI:cwg, MP:0002388] +subset: human_subset +subset: mouse_subset subset: pheno_slim -synonym: "Peyer's patch epithelium" EXACT [MA:0000731] +synonym: "Peyer's patch epithelium" EXACT [MA:0000731, PMID:31813624] xref: EMAPA:36506 xref: MA:0000731 is_a: UBERON:0001277 ! intestinal epithelium @@ -253701,6 +260183,7 @@ relationship: part_of UBERON:0001211 ! Peyer's patch id: UBERON:0004694 name: Harderian gland epithelium def: "An epithelium that is part of a Harderian gland [Automatically generated definition]." [OBOL:automatic] +subset: mouse_subset synonym: "epithelium of harderian gland" EXACT [] synonym: "harderian gland epithelium" EXACT [MA:0001248] xref: MA:0001248 @@ -253713,6 +260196,8 @@ relationship: part_of UBERON:0004187 ! Harderian gland id: UBERON:0004695 name: arterial system smooth muscle def: "A portion of smooth muscle tissue that is part of an arterial system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:36503 xref: MA:0000704 is_a: UBERON:0001135 ! smooth muscle tissue @@ -253724,6 +260209,8 @@ relationship: part_of UBERON:0004572 ! arterial system id: UBERON:0004696 name: venous system smooth muscle def: "A portion of smooth muscle tissue that is part of a venous system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:36613 xref: MA:0000715 is_a: UBERON:0004237 ! blood vessel smooth muscle @@ -253736,6 +260223,8 @@ relationship: part_of UBERON:0004582 ! venous system id: UBERON:0004697 name: Peyer's patch germinal center def: "Area of the Peyer's patch where B cells proliferate and differentiate into plasma cells." [MP:0002391] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:35684 xref: MA:0000734 @@ -253752,6 +260241,8 @@ relationship: part_of UBERON:0001211 ! Peyer's patch id: UBERON:0004698 name: vena cava endothelium def: "An endothelium that is part of a vena cava [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37800 {source="MA:th"} xref: MA:0000713 xref: NCIT:C49318 @@ -253765,6 +260256,8 @@ relationship: part_of UBERON:0004087 ! vena cava id: UBERON:0004699 name: outflow tract endothelium def: "An endothelium that is part of a outflow tract [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: MA:0000490 xref: VHOG:0001524 is_a: UBERON:0008307 ! heart endothelium @@ -253777,6 +260270,8 @@ property_value: homology_notes "It is assumed that during evolution, a circulato id: UBERON:0004700 name: arterial system endothelium def: "An endothelium that is part of an arterial system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:35145 xref: MA:0000703 xref: NCIT:C49329 @@ -253790,6 +260285,8 @@ relationship: part_of UBERON:0004572 ! arterial system id: UBERON:0004701 name: venous system endothelium def: "An endothelium that is part of a venous system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:35907 xref: MA:0000714 xref: NCIT:C49320 @@ -253803,6 +260300,8 @@ relationship: part_of UBERON:0004582 ! venous system id: UBERON:0004702 name: respiratory system blood vessel endothelium def: "A blood vessel endothelium that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:35732 xref: MA:0001805 is_a: UBERON:0004638 ! blood vessel endothelium @@ -253816,6 +260315,8 @@ relationship: part_of UBERON:0003504 ! respiratory system blood vessel id: UBERON:0004703 name: dorsal thalamus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "dorsal thalamus" EXACT [FMA:62007] @@ -253851,6 +260352,8 @@ property_value: editor_note "TODO. http://www.ncbi.nlm.nih.gov/pubmed/8167659" x id: UBERON:0004704 name: bone fossa def: "A depression or hollow in a bone[WP]." [Wikipedia:Fossa#Anatomy] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "concavities" RELATED OMO:0003004 [TAO:0001743] synonym: "concavity" RELATED [TAO:0001743] @@ -253875,6 +260378,8 @@ property_value: external_ontology_notes "General Anatomical term in FMA; not res id: UBERON:0004705 name: fenestra def: "An opening in the skull or other bones[WP]." [Wikipedia:Fenestra] +subset: human_subset +subset: mouse_subset synonym: "fenestrae" RELATED OMO:0003004 [] xref: Wikipedia:Fenestra_(anatomy) is_a: UBERON:0002553 ! anatomical cavity @@ -253885,6 +260390,8 @@ property_value: editor_note "TODO check fenestra vs fossa. fenestra = hole, foss id: UBERON:0004706 name: bulbus cordis def: "A transient fetal dilation of the distal (or cranial) heart tube located where the arterial trunk joins the ventral roots of the aortic arches." [ISBN:0-683-40008-8, MP:0010568] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "primitive right ventricle endocardium" EXACT [EHDAA2:0000197] @@ -253908,6 +260415,8 @@ id: UBERON:0004707 name: pharyngula stage def: "A stage that follows the blastula, gastrula and neurula stages. At the pharyngula stage, all vertebrate embryos show remarkable similarities." [Wikipedia:Pharyngula] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "pharyngula" RELATED [] synonym: "phylotypic stage" EXACT [] xref: DrerDO:0000052 @@ -253927,6 +260436,8 @@ name: paired limb/fin alt_id: UBERON:0009872 def: "An appendage that is part of an appendage girdle complex." [https://github.com/geneontology/go-ontology/issues/9029, UBERON:cjm] subset: homology_grouping +subset: human_subset +subset: mouse_subset synonym: "girdle-associated appendage" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "jointed paired lateral appendage" NARROW [https://orcid.org/0000-0002-6601-2165] synonym: "limb or fin" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -253955,6 +260466,8 @@ name: pelvic appendage alt_id: UBERON:0009876 def: "Paired appendage that consists of the posterior appendicular skeleton and associated soft and hard tissues, but excludes the pelvic girdle and its associated soft and hard tissues." [VSAO:0000150] subset: homology_grouping +subset: human_subset +subset: mouse_subset synonym: "hindlimb/pelvic fin" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "pelvic appendage" EXACT [VSAO:0000126] synonym: "pelvic limb/fin" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -253977,6 +260490,8 @@ name: pectoral appendage alt_id: UBERON:0009875 def: "Paired appendage that consists of the anterior appendicular skeleton and associated soft and hard tissues, but excludes the pectoral girdle and its associated soft and hard tissues." [VSAO:0000150-modified] subset: homology_grouping +subset: human_subset +subset: mouse_subset synonym: "anterior appendage" BROAD [] synonym: "anterior limb/fin" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "anterior paired appendage" EXACT [VSAO:0000148] @@ -253999,6 +260514,8 @@ property_value: homology_notes "While the skeletons of teleost pectoral fins and id: UBERON:0004711 name: jugular vein def: "The jugular veins are veins that bring deoxygenated blood from the head back to the heart via the superior vena cava." [Wikipedia:Jugular_vein] +subset: human_subset +subset: mouse_subset synonym: "jugular" RELATED [] synonym: "vena jugularis" RELATED [BTO:0001744] xref: BTO:0001744 @@ -254022,6 +260539,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gr id: UBERON:0004713 name: corpus cavernosum penis def: "One of the columns of erectile tissue forming the dorsum and sides of the penis." [BTO:0002019, Wikipedia:Corpus_cavernosum_penis] +subset: human_subset +subset: mouse_subset synonym: "cavernous body of penis" RELATED [BTO:0002019] synonym: "corpus cavernosum" BROAD [BTO:0002019] synonym: "corpus cavernosum of penis" EXACT [FMA:19618] @@ -254054,6 +260573,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gr id: UBERON:0004714 name: septum pellucidum def: "A triangular double membrane, consisting of glial cells and fibers (Heimer, 1996) separating the anterior horns of the lateral ventricles of the brain. It is situated in the median plane and bounded by the corpus callosum and the body and columns of the fornix." [BIRNLEX:1315] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lateral septum" RELATED [MP:0012004] synonym: "pellucidum" RELATED [BTO:0003448] @@ -254087,6 +260608,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gr id: UBERON:0004715 name: annulus fibrosus disci intervertebralis def: "The ring of fibrocartilage and fibrous tissue forming the circumference of the intervertebral disc; surrounds the nucleus pulposus, which is prone to herniation when the annulus fibrosus is compromised." [BTO:0003629, Wikipedia:Annulus_fibrosus_disci_intervertebralis] +subset: human_subset +subset: mouse_subset synonym: "annulus fibrosus" BROAD [MA:0000111] synonym: "annulus fibrosus of intervertebral disc" RELATED [BTO:0003629] synonym: "anulus fibrosus (diskus intervertebralis)" EXACT [FMA:13551] @@ -254108,6 +260631,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d9/Ce id: UBERON:0004716 name: conceptus def: "The embryo and its adnexa (appendages or adjunct parts) or associated membranes (i.e. the products of conception) The conceptus includes all structures that develop from the zygote, both embryonic and extraembryonic. It includes the embryo as well as the embryonic part of the placenta and its associated membranes - amnion, chorion (gestational sac), and yolk sac[WP]." [BTO:0003834, Wikipedia:Conceptus] +subset: human_subset +subset: mouse_subset synonym: "embryo plus adnexa" EXACT [] xref: AEO:0000194 xref: BTO:0003834 @@ -254129,6 +260654,8 @@ property_value: editor_note "EHDAA2 places this as a subtype of organism. This l id: UBERON:0004717 name: Brodmann (1909) area 29 def: "Brodmann area 29, also known as granular retrolimbic area 29 or granular retrosplenial cortex, is a cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. In the human it is a narrow band located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the ectosplenial area 26 and externally by the agranular retrolimbic area 30 (Brodmann-1909)." [Wikipedia:Brodmann_area_29] +subset: human_subset +subset: mouse_subset synonym: "area 29 of Brodmann" EXACT [FMA:68626] synonym: "area 29 of Brodmann-1909" EXACT [BIRNLEX:1763] synonym: "area retrolimbica granularis" EXACT [BIRNLEX:1763] @@ -254152,6 +260679,8 @@ property_value: external_definition "A cytoarchitecturally defined portion of th [Term] id: UBERON:0004718 name: Brodmann (1909) area 26 +subset: human_subset +subset: mouse_subset synonym: "area 26 of Brodmann" EXACT [FMA:68623] synonym: "area 26 of Brodmann (guenon)" RELATED [NeuroNames:1031] synonym: "area 26 of Brodmann-1909" EXACT [BIRNLEX:1757] @@ -254179,6 +260708,8 @@ id: UBERON:0004719 name: kidney arcuate vein def: "Any of the veins that parallel the arcuate arteries, receive blood from the interlobular veins and straight venules, and terminate in the interlobar veins." [ISBN:0-683-40008-8, MP:0011325] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "arciform vein of kidney" EXACT [MP:0011325] synonym: "arcuate vein" BROAD [MA:0002593] @@ -254204,6 +260735,8 @@ id: UBERON:0004720 name: cerebellar vermis def: "A subregion of the cerebellar cortex, consisting of the most medial zone of the cerebellar cortex, stradding the midline. May be continuous with the lateral cerebellar hemispheres in some areas of the cerebellum, e.g., dorsally, or separated by deeper fissures in others (e.g., ventrally)." [BIRNLEX:1106] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebellum vermis" EXACT [FMA:76928] synonym: "vermal parts of the cerebellum" EXACT [BIRNLEX:1175] @@ -254251,6 +260784,8 @@ property_value: taxon_notes "In bony fish, or teleosts, it has been proposed tha id: UBERON:0004721 name: crista ampullaris def: "The crista ampullaris is the sensory organ of rotation located in the semicircular canal of the inner ear. The function of the crista ampullaris is to sense angular acceleration and deceleration." [Wikipedia:Crista_ampullaris] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "ampullary crest" RELATED [MA:0002771] @@ -254273,6 +260808,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ec/Se id: UBERON:0004722 name: deep cervical lymph node def: "The deep cervical lymph nodes are a group of cervical lymph nodes found near the internal jugular vein. They can be divided into upper and lower groups, or superior and inferior groups. Alternatively, they can be divided into deep anterior cervical lymph nodes and deep lateral cervical lymph nodes. They can also be divided into three groups: superior deep jugular, middle deep jugular, and 'inferior deep jugular'." [Wikipedia:Deep_cervical_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "lower jugular nodes" RELATED [Wikipedia:Deep_cervical_lymph_nodes] synonym: "middle jugular nodes" RELATED [Wikipedia:Deep_cervical_lymph_nodes] synonym: "upper jugular nodes" RELATED [Wikipedia:Deep_cervical_lymph_nodes] @@ -254291,6 +260828,8 @@ id: UBERON:0004723 name: interlobular artery def: "The branches of the arcuate arteries of the kidney that radiate outward throught the renal columns and supply the glomeruli[MP]. The first set of renal bloodvessels, the interlobular arteries (or cortical radiate arteries, or cortical radial arteries), are given off at right angles from the side of the arcuate arteries looking toward the cortical substance, and pass directly outward between the medullary rays to reach the fibrous tunic, where they end in the capillary network of this part. These vessels do not anastomose with each other, but form what are called end-arteries. In their outward course they give off lateral branches; these are the afferent vessels for the renal corpuscles; they enter the capsule, and end in the glomerulus. From each tuft the corresponding efferent vessel arises, and, having made its egress from the capsule near to the point where the afferent vessel enters, breaks up into a number of branches, which form a dense plexus within Bowman's capsule." [MP:0011316, Wikipedia:Interlobular_arteries] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "arteriae corticales radiatae" RELATED OMO:0003011 [Wikipedia:Interlobular_arteries] synonym: "arteriae interlobulares renis" RELATED OMO:0003011 [Wikipedia:Interlobular_arteries] @@ -254317,6 +260856,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/02/Gr id: UBERON:0004724 name: medial palpebral ligament def: "The medial palpebral ligament (tendo oculi), about 4 mm. in length and 2 mm. in breadth, is attached to the frontal process of the maxilla in front of the lacrimal groove. Crossing the lacrimal sac, it divides into two parts, upper and lower, each attached to the medial end of the corresponding tarsus. As the ligament crosses the lacrimal sac, a strong aponeurotic is given off from its posterior surface; this expands over the sac, and is attached to the posterior lacrimal crest." [Wikipedia:Medial_palpebral_ligament] +subset: human_subset +subset: mouse_subset synonym: "l. palpebrale mediale" RELATED OMO:0003011 [Wikipedia:Medial_palpebral_ligament] xref: EMAPA:37608 {source="MA:th"} xref: MA:0001258 @@ -254334,6 +260875,8 @@ id: UBERON:0004725 name: piriform cortex def: "The subdivision of the laminated olfactory cortex with only three main layers that receive monosynaptic input from the olfactory bulb via the lateral olfactory tract; it is located bilaterally in the ventrolateral forebrain and is commonly divided into anterior and posterior regions." [MP:0010009, PMID:17714095] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "area prepiriformis" RELATED OMO:0003011 [NeuroNames:165] synonym: "cortex piriformis" EXACT OMO:0003011 [Wikipedia:Piriform_cortex] @@ -254375,18 +260918,18 @@ property_value: taxon_notes "Piriform cortical regions are present in the brains [Term] id: UBERON:0004726 name: vasa recta -def: "In the blood supply of the kidney, the vasa recta renis (or straight arteries of kidney, or straight arterioles of kidney) form a series of straight capillaries in the medulla. They lie parallel to the loop of Henle. These vessels branch off the efferent arterioles of juxtamedullary nephrons (those nephrons closest to the medulla), enter the medulla, and surround the loop of Henle." [Wikipedia:Vasa_recta] +def: "A group of microvessels that are part of the kidney. A vasa recta has a hairpin-like shape, entering the renal medulla as the straight arterioles and surrounds the loop of Henle, forming a capillary network. Finally it leaves the renal medulla to ascend to the cortex as the straight venules. The primary function of the vasa recta is to facilitate countercurrent exchange, which is essential for the kidney's ability to concentrate urine" [PMID:23126245, Wikipedia:Vasa_recta] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim -synonym: "arteria recta" RELATED [Wikipedia:Vasa_recta] -synonym: "arteriae rectae" RELATED [Wikipedia:Vasa_recta] -synonym: "arteriolae rectae renis" EXACT OMO:0003011 [FMA:72006, FMA:TA] +synonym: "arteriolae rectae renis" NARROW OMO:0003011 [FMA:72006, FMA:TA] synonym: "arteriolae rectae renis" RELATED OMO:0003011 [Wikipedia:Vasa_recta] synonym: "arteriolae recti" RELATED [Wikipedia:Vasa_recta] synonym: "kidney vasa recta" EXACT [MP:0011324] -synonym: "renal medullary capillary" EXACT [EMAPA:30043] -synonym: "set of straight arterioles of kidney" EXACT [FMA:72006] -synonym: "straight arterioles of kidney" EXACT [FMA:72006] +synonym: "renal medullary capillary" NARROW [EMAPA:30043] +synonym: "set of straight arterioles of kidney" NARROW [FMA:72006] +synonym: "straight arterioles of kidney" NARROW [FMA:72006] synonym: "vasa recta of kidney" EXACT [FMA:72006] synonym: "vasa recta renis" EXACT OMO:0003011 [FMA:72006, FMA:TA] synonym: "vasa rectae" RELATED [Wikipedia:Vasa_recta] @@ -254395,16 +260938,18 @@ xref: FMA:72006 xref: galen:ArteriaeRectae xref: MA:0002595 xref: Wikipedia:Vasa_recta -is_a: UBERON:0001140 ! renal vein +is_a: UBERON:0006544 ! kidney vasculature relationship: connected_to UBERON:0004640 ! renal efferent arteriole +relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/21/Kidney_nephron.png" xsd:anyURI -property_value: editor_note "TODO - is this a vein or set of veins? in MA it is a venous blood vessel" xsd:string [Term] id: UBERON:0004727 name: cochlear nerve def: "A nerve in the head that carries signals from the cochlea of the inner ear to the brain. It is part of the vestibulocochlear nerve, the 8th cranial nerve which is found in higher vertebrates; the other portion of the 8th cranial nerve is the vestibular nerve which carries spatial orientation information from the semicircular canals. The cochlear nerve is a sensory nerve, one which conducts to the brain information about the environment, in this case acoustic energy impinging on the tympanic membrane. The cochlear nerve arises from within the cochlea and extends to the brainstem, where its fibers make contact with the cochlear nucleus, the next stage of neural processing in the auditory system[WP]." [Wikipedia:Cochlear_nerve] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "auditory nerve" EXACT [FMA:53431] @@ -254484,6 +261029,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/526" xsd: id: UBERON:0004731 name: neuromere def: "A transverse unitary subdivision of the neural tube that shares a common dorsoventral structure (floor, basal, alar, and roof plates), but each having differential molecular identities and fates; they comprise the secondary prosencephalon, diencephalon (prosomeres), the midbrain (mesomeres), and the hindbrain (rhombomeres)." [DOI:10.1016/j.tins.2013.06.004, https://github.com/obophenotype/uberon/issues/318] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "neural metamere" RELATED [] synonym: "neural segment" RELATED [] @@ -254509,6 +261056,8 @@ creation_date: 2009-06-18T09:00:04Z id: UBERON:0004732 name: segmental subdivision of nervous system def: "Any segmental subdivision of a nervous system. Includes metameric developmental segments, such as vertebrates neuromeres." [FBbt:00005140, http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "neuromere" RELATED [FBbt:00005140] is_a: UBERON:0000063 ! organ subunit @@ -254521,6 +261070,8 @@ property_value: editor_note "revisit this after CARO is revised and/or we have d id: UBERON:0004733 name: segmental subdivision of hindbrain def: "An organ subunit that is part of a hindbrain [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "hindbrain segment" EXACT [FMA:61998] synonym: "segment of hindbrain" EXACT [FMA:61998] @@ -254536,6 +261087,8 @@ id: UBERON:0004734 name: gastrula alt_id: UBERON:0007012 def: "Organism at the gastrula stage." [Wikipedia:Gastrula, Wikipedia:Trilaminar_blastocyst] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "blastocystis trilaminaris" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "gastrula embryo" EXACT [BILA:0000060] @@ -254570,6 +261123,8 @@ property_value: external_ontology_notes "We explicitly merge the NCITA terms her id: UBERON:0004735 name: archenteron def: "The cavity of a gastrula forming a primitive gut." [BTO:0001696] +subset: human_subset +subset: mouse_subset synonym: "gastrocoel" RELATED [XAO:0000092] synonym: "mesenteron" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "primitive endodermal cavity" RELATED [] @@ -254587,6 +261142,8 @@ property_value: development_notes "The primitive gut that forms during gastrulat id: UBERON:0004736 name: metanephric glomerulus def: "Glomerulus of the mature vertebrate kidney, or metanephros." [GO:0072224] +subset: human_subset +subset: mouse_subset synonym: "glomerulus of metanephros" EXACT [] xref: VHOG:0001242 is_a: UBERON:0000074 ! renal glomerulus @@ -254598,6 +261155,8 @@ relationship: part_of UBERON:0000081 ! metanephros id: UBERON:0004737 name: metanephric collecting duct def: "A collecting duct of renal tubule that is part of a metanephros [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "collecting duct of metanephros" EXACT [] synonym: "metanephric collecting tubule" RELATED [VHOG:0000983] xref: VHOG:0000983 @@ -254614,6 +261173,8 @@ relationship: part_of UBERON:0005110 {is_inferred="true", source="https://github id: UBERON:0004738 name: metanephric juxtaglomerular apparatus def: "Juxtaglomerular apparatus of the mature vertebrate kidney, or metanephros." [GO:0072206] +subset: human_subset +subset: mouse_subset synonym: "juxtaglomerular apparatus of metanephros" EXACT [] is_a: UBERON:0002303 ! juxtaglomerular apparatus is_a: UBERON:0004120 ! mesoderm-derived structure @@ -254627,6 +261188,8 @@ id: UBERON:0004739 name: pronephric glomerulus alt_id: UBERON:0004191 def: "The glomus forms from the splanchnic intermediate mesoderm and is the vascularized filtration unit, filtering the blood before it enters the tubules. The glomus is external to the nephron and extends over more than one body segment." [DOI:10.1371/journal.pone.0099864, GO:0072013, GOC:mtg_kidney_jan10, PMID:10572058, PMID:15647339, PMID:9268568, XAO:0000318] +subset: human_subset +subset: mouse_subset synonym: "corpuscle" RELATED [XAO:0000318] synonym: "glomera" RELATED OMO:0003004 [XAO:0000318] synonym: "glomerulus of pronephros" EXACT [] @@ -254655,6 +261218,8 @@ id: UBERON:0004740 name: basibranchial bone def: "A basibranchial element that is bone. Basibranchial elements are ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton." [http://orcid.org/0000-0002-6601-2165, TAO:wd] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "basibranchial bone" EXACT [TAO:0000170] synonym: "basibranchial bones" EXACT OMO:0003004 [] synonym: "copula 1 bone" RELATED [] @@ -254703,6 +261268,8 @@ id: UBERON:0004742 name: dentary def: "The dentary is a dermal bone that forms the antero-lateral part of the lower jaw in fishes and amphibians, extending to the whole lower jaw in mammals[VHOG,modified]." [VHOG:0001022] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "dentale" RELATED [AAO:0000124] synonym: "dentaries" EXACT OMO:0003004 [TAO:0000191] synonym: "dentary bone" EXACT [ZFA:0000191] @@ -254765,6 +261332,8 @@ property_value: terminology_notes "see discussion in Kardong - suggests using pr id: UBERON:0004744 name: articular/anguloarticular subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "angulaire" RELATED [AAO:0000028] synonym: "angulare" RELATED [AAO:0000028] synonym: "angulo-articular" EXACT [TAO:0000467] @@ -254800,6 +261369,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/98" xsd:a id: UBERON:0004745 name: parasphenoid def: "A tooth- or denticle-covered plate which is attached to the sphenoid stem[Palaeos]." [http://palaeos.com/vertebrates/bones/braincase/sphenethmoid.html] +subset: human_subset +subset: mouse_subset synonym: "keilbein" RELATED [AAO:0000385] synonym: "os parasphenoidale" RELATED [AAO:0000385] synonym: "os sphenoideum" RELATED [AAO:0000385] @@ -254826,6 +261397,8 @@ id: UBERON:0004746 name: prootic bone def: "Paired, endochondral bones forming the anterior, and lateral walls of the otic capsules." [AAO:0000514] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "prootic" EXACT [AAO:0000514] synonym: "prootics" RELATED OMO:0003004 [TAO:0000575] xref: AAO:0000514 @@ -254853,6 +261426,8 @@ id: UBERON:0004747 name: supraoccipital bone alt_id: UBERON:0005237 def: "Endochondral bone that is located at the dorsal part of the occipital region of the cranium or the dorso-posterior part of the skull[TAP,modified]." [TAO:0000595] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "supraoccipital" EXACT [VHOG:0001150] @@ -254893,6 +261468,8 @@ consider: ZFA:0000620 id: UBERON:0004749 name: blastodisc def: "A small, circular, white spot (approximately 2-3 mm across) on the surface of the yellow yolk of an egg that has been laid. The nucleus of the egg is in the germinal disc." [Wikipedia:Germinal_disc] +subset: human_subset +subset: mouse_subset synonym: "embryonic disc" RELATED [BTO:0000494] synonym: "gastrodisk" RELATED [BTO:0000494] synonym: "germ disc" RELATED [BTO:0000494] @@ -254914,6 +261491,8 @@ relationship: has_part GO:0001674 ! female germ cell nucleus id: UBERON:0004750 name: blastoderm def: "A layer of cells formed at one pole of macrolecithal eggs such as the yolky egg of birds. The yolk prevents the division from taking place through the egg, resulting in meroblastic cleavage during the many cleavage divisions. At the animal pole (containing less yolk than the vegetal pole), the zygote divides and subdivides, forming the blastoderm, which gradually spreads around the yolk and forms the embryo. The blastoderm is composed of two layers, the epiblast and the hypoblast, which enclose the fluid-filled blastocoel cavity." [Wikipedia:Blastoderm] +subset: human_subset +subset: mouse_subset synonym: "germinal membrane" RELATED [BTO:0000126] synonym: "membrana germinativa" RELATED [BTO:0000126] xref: AAO:0000042 @@ -254933,6 +261512,8 @@ relationship: has_part UBERON:0002532 ! epiblast (generic) [Term] id: UBERON:0004751 name: hypohyal bone +subset: human_subset +subset: mouse_subset synonym: "hypohyals" EXACT OMO:0003004 [ZFA:0001381] xref: AAO:0000958 xref: TAO:0001381 @@ -254970,6 +261551,8 @@ property_value: external_definition "Column of catilage, remnant in the adult of id: UBERON:0004753 name: scapulocoracoid def: "Skeletal element that consists of the scapula and the coracoid[VSAO, modified]." [https://github.com/obophenotype/uberon/issues/125, https://github.com/obophenotype/uberon/issues/66, VSAO:0005002, Wikipedia:Scapulocoracoid] +subset: human_subset +subset: mouse_subset synonym: "coraco-scapular cartilage" NARROW [ZFA:0001455] synonym: "scapulo-coracoid cartilage" NARROW [TAO:0001455] synonym: "scapulocoracoid cartilage" NARROW [TAO:0001455] @@ -254996,6 +261579,8 @@ id: UBERON:0004754 name: foramen ovale of heart def: "An anatomical space in the fetal heart that allows blood to enter the left atrium from the right atrium." [Wikipedia:Foramen_ovale_(heart)] comment: It is one of two fetal cardiac shunts, the other being the ductus arteriosus (which allows blood that still escapes to the right ventricle to bypass the pulmonary circulation). Another similar adaptation in the fetus is the ductus venosus[WP] +subset: human_subset +subset: mouse_subset synonym: "Bottalo's foramen" EXACT [FMA:86043] synonym: "falx septi" EXACT [Wikipedia:Foramen_ovale_(heart)] synonym: "foramen ovale" NARROW [galen:ForamenOvale, MA:0001873] @@ -255021,6 +261606,8 @@ id: UBERON:0004755 name: skeletal tissue def: "A specialized form of connective tissue in which the extracellular matrix is firm, providing the tissue with resilience, and/or mineralized and that functions in mechanical and structural support.[VSAO]." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/134, PSPUB:0000170, VSAO:0000015] comment: Four classes of mineralized tissues are found in vertebrates: bone, cartilage, dentine, and enamel. We think of cartilage and bone as skeletal tissues and of enamel and dentine as dental tissues, but enamel and dentine arose evolutionarily together with bone as skeletal tissues in the dermal skeleton (exoskeleton) of early vertebrates. Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone. Cartilage, on the other hand, provided the basis for the second vertebrate skeletal system, the endoskeleton (Smith and Hall, 1990; Hall, 1998a,b). some invertebrate skeletal tissues have surprisingly bone-like features. Examples include chondrocytes interconnected by cell processes in cephalopod cartilages (Cole and Hall, 2004a,b), and the calcium phosphate layer in the shells of brachiopods (Rodland et al., 2003). However, neither bone nor mineralized cartilage have been found in invertebrates. Editors notes: TODO - develops_from +subset: human_subset +subset: mouse_subset xref: EMAPA:37744 {source="MA:th"} xref: MA:0003047 xref: SCTID:309311006 @@ -255037,6 +261624,8 @@ property_value: external_definition "A specialized form of connective tissue in id: UBERON:0004756 name: dermal skeletal element def: "Dermis-derived entity that is made of skeletal tissue." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/206] +subset: human_subset +subset: mouse_subset synonym: "dermal element" EXACT [VSAO:curator] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004765 ! skeletal element @@ -255104,6 +261693,8 @@ id: UBERON:0004760 name: gland of anal canal def: "A gland that is part of an anal canal [Automatically generated definition]." [OBOL:automatic, Wikipedia:Anal_gland] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "anal gland" RELATED [] synonym: "anal sac" RELATED SENSU [Wikipedia:Anal_gland] @@ -255130,6 +261721,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0004761 name: cartilaginous neurocranium def: "The primitive cartilagionous skeletal structure of the fetal skull that grows to envelop the rapidly growing embyonic brain. In humans, the chondrocranium begins forming at 28 days from mesenchymal condensations and is fully formed between week 7 and 9 of fetal development. While the majority of the chondrocranium is succeeded by the bony skull in most higher vertebrates, some components do persist into adulthood.[1] In Cartilagious fishes and Agnathans, the chondrocranium persist throughout life.[2] Embryologically, the chondrocranium represent the basal cranial structure, and lay the base for the formation of the endocranium in higher vertebrates[WP]." [Wikipedia:Chondrocranium] +subset: human_subset +subset: mouse_subset synonym: "cartilaginous chondocranium" EXACT [] synonym: "cartilaginous skull" RELATED [] synonym: "cartiligionous skeletal structure of skull" EXACT [] @@ -255154,6 +261747,8 @@ property_value: external_ontology_notes "in contrast to chondrocranium, this str id: UBERON:0004763 name: endochondral bone tissue def: "Replacement bone tissue that forms within cartilage[VSAO, modified]." [GO:0001958, VSAO:0000145, Wikipedia:Endochondral_ossification] +subset: human_subset +subset: mouse_subset subset: uberon_slim subset: vertebrate_core xref: EMAPA:35304 @@ -255172,6 +261767,8 @@ property_value: external_ontology_notes "the distinction between endochondral bo id: UBERON:0004764 name: intramembranous bone tissue def: "Bone tissue that forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]." [GO:0001957, Wikipedia:Intramembranous_ossification] +subset: human_subset +subset: mouse_subset xref: MA:0002837 xref: Wikipedia:Intramembranous_ossification is_a: UBERON:0002481 ! bone tissue @@ -255186,6 +261783,8 @@ property_value: external_ontology_notes "note the distinction between intramembr id: UBERON:0004765 name: skeletal element def: "Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: uberon_slim xref: AAO:0011129 @@ -255204,6 +261803,8 @@ id: UBERON:0004766 name: cranial bone def: "A bone that is part of a cranium." [UBERON:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cranium bone" EXACT [UBERON:automatic] xref: SCTID:181792001 is_a: UBERON:0001474 ! bone element @@ -255217,6 +261818,8 @@ property_value: curator_notes "here cranium = skull - mandible" xsd:string id: UBERON:0004767 name: vomerine tooth def: "A tooth that is on the vomer." [http://www.encyclo.co.uk/define/Vomerine%20teeth] +subset: human_subset +subset: mouse_subset xref: TAO:0001631 is_a: UBERON:0012070 ! palatal tooth intersection_of: UBERON:0001091 ! calcareous tooth @@ -255231,6 +261834,8 @@ id: UBERON:0004768 name: bone of lower jaw def: "Any bone that is part of the lower jaw skeleton. This includes (when present): the dentary/mandible, the articular, the splenial, the suprangular." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "lower jaw bone" EXACT [] is_a: UBERON:0012360 ! bone of jaw intersection_of: UBERON:0001474 ! bone element @@ -255244,6 +261849,8 @@ property_value: editor_note "Do not manually classify under here - bones are aut id: UBERON:0004769 name: diaphysis def: "Subdivision of long bone which forms the part of the bone between the two epiphyses, excluding the metaphyses[FMA,modified]." [FMA:24013, Wikipedia:Diaphysis] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "body of long bone" EXACT [] @@ -255264,6 +261871,8 @@ property_value: external_definition "The main or mid section (shaft) of a long b id: UBERON:0004770 name: articular system def: "Anatomical system that consists of all the joints of the body." [VSAO:0000181] +subset: human_subset +subset: mouse_subset synonym: "joint system" EXACT [FMA:23878] synonym: "set of all joints" RELATED [] synonym: "set of all joints of body" EXACT [FMA:23878] @@ -255286,6 +261895,8 @@ relationship: part_of UBERON:0001434 {source="FMA"} ! skeletal system id: UBERON:0004771 name: posterior nasal aperture def: "Opening/conduit between the nasal cavity and the nasopharynx[AAO] The choanae are separated by the vomer[WP]." [AAO:0000093, Wikipedia:Posterior_nasal_apertures] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "choana" BROAD [Wikipedia:Choane, XAO:0000277] synonym: "choanae" RELATED OMO:0003004 [VHOG:0000545] @@ -255322,6 +261933,8 @@ property_value: taxon_notes "In addition to tetrapods, the lungfish has internal id: UBERON:0004772 name: eyelid tarsus def: "The tarsi (tarsal plates) are two comparatively thick, elongated plates of dense connective tissue, about 2.5 cm. in length; one is found in each eyelid, and contributes to its form and support. They directly abut the lid margins." [Wikipedia:Tarsus_(eyelids)] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "eyelid tarsi" RELATED OMO:0003004 [] synonym: "tarsal plate" EXACT [FMA:59086] @@ -255346,6 +261959,8 @@ property_value: taxon_notes "In most taxa (birds, mammals, lizards), the tarsal id: UBERON:0004773 name: superior eyelid tarsus def: "An eyelid tarsus that is part of a upper eyelid [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "superior tarsal plate" EXACT [FMA:59087] synonym: "superior tarsus" EXACT [FMA:59087] synonym: "superior tarsus of eyelid" EXACT [] @@ -255366,6 +261981,8 @@ relationship: part_of UBERON:0001712 ! upper eyelid id: UBERON:0004774 name: inferior eyelid tarsus def: "An eyelid tarsus that is part of a lower eyelid [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "inferior tarsal plate" EXACT [FMA:59088] synonym: "inferior tarsus" EXACT [FMA:59088] synonym: "inferior tarsus of eyelid" EXACT [] @@ -255385,6 +262002,8 @@ relationship: part_of UBERON:0001713 ! lower eyelid id: UBERON:0004775 name: outer renal medulla vasa recta def: "A vasa recta that is part of a outer medulla of kidney [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "kidney outer medulla vasa recta" EXACT [MP:0011330] synonym: "kidney outer renal medulla vasa recta" EXACT [MP:0011330] @@ -255398,8 +262017,6 @@ synonym: "vasa recta of outer zone of renal medulla" EXACT [OBOL:automatic] xref: EMAPA:36560 xref: MA:0002597 is_a: UBERON:0004726 ! vasa recta -is_a: UBERON:0013126 ! vein of abdomen -is_a: UBERON:0014401 ! renal venous blood vessel intersection_of: UBERON:0004726 ! vasa recta intersection_of: part_of UBERON:0001293 ! outer medulla of kidney relationship: contributes_to_morphology_of UBERON:0001293 ! outer medulla of kidney @@ -255409,6 +262026,8 @@ relationship: part_of UBERON:0001293 ! outer medulla of kidney id: UBERON:0004776 name: inner renal medulla vasa recta def: "A vasa recta that is part of a inner medulla of kidney [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "inner medulla of kidney vasa recta" EXACT [OBOL:automatic] synonym: "inner zone of medulla of kidney vasa recta" EXACT [OBOL:automatic] @@ -255422,8 +262041,6 @@ synonym: "vasa recta of set of inner region of renal pyramids" EXACT [OBOL:autom xref: EMAPA:36559 xref: MA:0002596 is_a: UBERON:0004726 ! vasa recta -is_a: UBERON:0013126 ! vein of abdomen -is_a: UBERON:0014401 ! renal venous blood vessel intersection_of: UBERON:0004726 ! vasa recta intersection_of: part_of UBERON:0001294 ! inner medulla of kidney relationship: contributes_to_morphology_of UBERON:0001294 ! inner medulla of kidney @@ -255433,6 +262050,8 @@ relationship: part_of UBERON:0001294 ! inner medulla of kidney id: UBERON:0004777 name: respiratory system submucosa def: "A submucosa that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "apparatus respiratorius submucosa" EXACT [OBOL:automatic] synonym: "submucosa of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "submucosa of respiratory system" EXACT [OBOL:automatic] @@ -255448,6 +262067,8 @@ relationship: part_of UBERON:0003570 ! respiratory system connective tissue id: UBERON:0004778 name: larynx submucosa def: "A submucosa that is part of a larynx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "laryngeal submucosa" RELATED [EMAPA:35474] synonym: "submucosa of larynx" EXACT [OBOL:automatic] xref: EMAPA:35474 @@ -255464,6 +262085,8 @@ relationship: part_of UBERON:0001737 ! larynx id: UBERON:0004779 name: respiratory system lamina propria def: "A lamina propria that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "apparatus respiratorius lamina propria" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lamina propria mucosa" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of apparatus respiratorius" EXACT [OBOL:automatic] @@ -255484,6 +262107,8 @@ relationship: part_of UBERON:0004785 {is_inferred="true", source="https://github id: UBERON:0004780 name: gastrointestinal system lamina propria def: "A lamina propria that is part of a gastrointestinal system." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: MA:0001899 xref: NCIT:C49299 xref: UMLS:C1708197 {source="ncithesaurus:Gastrointestinal_Tract_Lamina_Propria"} @@ -255497,6 +262122,8 @@ relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal syste id: UBERON:0004781 name: gallbladder lamina propria def: "A lamina propria that is part of a gallbladder [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "biliary lamina propria" RELATED [MA:0001633] synonym: "gall bladder lamina propria" EXACT [OBOL:automatic] synonym: "gall bladder lamina propria mucosa" EXACT [OBOL:automatic] @@ -255521,6 +262148,8 @@ relationship: part_of UBERON:0005033 {is_inferred="true", source="https://github id: UBERON:0004782 name: gastrointestinal system serosa def: "A serous membrane that is part of a digestive system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "digestive system serosa" EXACT [OBOL:automatic] synonym: "digestive system serous membrane" EXACT [OBOL:automatic] synonym: "gastrointestinal system serous membrane" EXACT [OBOL:automatic] @@ -255539,6 +262168,8 @@ relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal syste id: UBERON:0004783 name: gallbladder serosa def: "A serous membrane that is part of a gallbladder [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "biliary serosa" RELATED [MA:0001634] synonym: "gall bladder serosa" EXACT [OBOL:automatic] synonym: "gall bladder serous membrane" EXACT [] @@ -255564,6 +262195,8 @@ relationship: part_of UBERON:0002110 ! gallbladder id: UBERON:0004784 name: heart ventricle wall def: "An anatomical wall that is part of a cardiac ventricle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anatomical wall of cardiac ventricle" EXACT [OBOL:automatic] synonym: "anatomical wall of heart ventricle" EXACT [OBOL:automatic] @@ -255594,6 +262227,8 @@ relationship: part_of UBERON:0002082 ! cardiac ventricle id: UBERON:0004785 name: respiratory system mucosa def: "The mucous membrane lining the respiratory tract." [MESH:A04.760, MGI:cwg, MP:0002277] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "apparatus respiratorius mucosa" EXACT [OBOL:automatic] synonym: "apparatus respiratorius mucosa of organ" EXACT [OBOL:automatic] @@ -255626,6 +262261,8 @@ id: UBERON:0004786 name: gastrointestinal system mucosa def: "A mucosa that is part of a gastrointestinal system." [OBOL:automatic] comment: The gut mucosa of amphioxus has insulin-secreting cells. http://www.ncbi.nlm.nih.gov/pubmed/16417468 +subset: human_subset +subset: mouse_subset synonym: "digestive tract mucosa" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "gut mucosa" EXACT [BTO:0000546] synonym: "gut mucuous membrane" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -255650,6 +262287,8 @@ relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal syste id: UBERON:0004787 name: urethra urothelium def: "An urothelium that is part of a urethra [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "urethra uroepithelium" EXACT [OBOL:automatic] synonym: "uroepithelium of urethra" EXACT [OBOL:automatic] @@ -255669,6 +262308,8 @@ relationship: part_of UBERON:0000057 ! urethra id: UBERON:0004788 name: kidney pelvis urothelium def: "The epithelial lining of the luminal space of the kidney pelvis." [MGI:csmith, MP:0011336] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "kidney pelvis transitional epithelium" EXACT [OBOL:automatic] synonym: "kidney pelvis uroepithelium" EXACT [OBOL:automatic] @@ -255702,6 +262343,8 @@ relationship: part_of UBERON:0001224 ! renal pelvis id: UBERON:0004789 name: larynx mucous gland def: "A mucous gland that is part of a larynx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucous gland of larynx" EXACT [OBOL:automatic] xref: EMAPA:37631 {source="MA:th"} xref: MA:0001767 @@ -255717,6 +262360,8 @@ relationship: part_of UBERON:0001824 ! mucosa of larynx id: UBERON:0004790 name: skin mucous gland def: "A mucous gland that is part of the skin." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "mucous gland of entire skin" EXACT [OBOL:automatic] synonym: "mucous gland of skin of body" EXACT [OBOL:automatic] @@ -255739,6 +262384,8 @@ id: UBERON:0004791 name: thymus trabecula def: "The thymic connective tissue which extends into the parenchyma." [ISBN:0-397-51047-0, MGI:cwg, MP:0002370] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "thymic trabecula" EXACT [OBOL:automatic] synonym: "thymus gland trabecula" EXACT [OBOL:automatic] @@ -255760,6 +262407,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0004792 name: secretion of endocrine pancreas def: "A secretion that is part of a endocrine pancreas [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "endocrine pancreas secretion" EXACT [OBOL:automatic] synonym: "pancreatic endocrine secretion" EXACT [ncithesaurus:Pancreatic_Endocrine_Secretion] synonym: "pars endocrina pancreatis secretion" EXACT [OBOL:automatic] @@ -255776,6 +262425,8 @@ relationship: part_of UBERON:0000016 ! endocrine pancreas id: UBERON:0004793 name: secretion of exocrine pancreas def: "A secretion that is part of a exocrine pancreas [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "exocrine pancreas secretion" EXACT [OBOL:automatic] synonym: "pancreatic exocrine secretion" EXACT [ncithesaurus:Pancreatic_Exocrine_Secretion] synonym: "pars exocrina pancreatis secretion" EXACT [OBOL:automatic] @@ -255792,6 +262443,8 @@ relationship: part_of UBERON:0000017 ! exocrine pancreas id: UBERON:0004794 name: esophagus secretion def: "A secretion that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "esophageal secretion" EXACT [FMA:79662] synonym: "gullet secretion" EXACT [OBOL:automatic] synonym: "oesophagus secretion" EXACT [OBOL:automatic] @@ -255811,6 +262464,8 @@ relationship: part_of UBERON:0001043 ! esophagus id: UBERON:0004795 name: pancreas secretion def: "A secretion that is part of a pancreas [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pancreatic secretion" EXACT [OBOL:automatic] synonym: "secretion of pancreas" EXACT [OBOL:automatic] xref: MA:0002516 @@ -255826,6 +262481,8 @@ id: UBERON:0004796 name: prostate gland secretion alt_id: UBERON:0010142 def: "A bodily secretion that is produced by the prostate gland." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "prostate fluid" RELATED [BTO:0001232] synonym: "prostate secretion" EXACT [OBOL:automatic] synonym: "prostatic fluid" EXACT [FMA:66884] @@ -255848,6 +262505,8 @@ property_value: taxon_notes "Prostatic secretions vary among species. They are g id: UBERON:0004797 name: blood vessel layer def: "Any of the tissue layers that comprise a blood vessel. Examples: tunica media, tunica adventitia." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: EMAPA:36296 xref: MA:0002854 is_a: UBERON:0004120 ! mesoderm-derived structure @@ -255862,6 +262521,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/61/B id: UBERON:0004798 name: respiratory system basal lamina def: "A basal lamina that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "apparatus respiratorius basal lamina" EXACT [OBOL:automatic] synonym: "apparatus respiratorius basal lamina of connective tissue" EXACT [OBOL:automatic] synonym: "basal lamina of apparatus respiratorius" EXACT [OBOL:automatic] @@ -255880,6 +262541,8 @@ relationship: part_of UBERON:0001004 ! respiratory system id: UBERON:0004799 name: trachea basal lamina def: "A basal lamina that is part of a respiratory airway [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal lamina of connective tissue of respiratory airway" EXACT [OBOL:automatic] xref: EMAPA:37553 {source="MA:th"} xref: MA:0001855 @@ -255894,6 +262557,8 @@ relationship: part_of UBERON:0001005 ! respiratory airway id: UBERON:0004800 name: bronchus basal lamina def: "A basal lamina that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basal lamina of bronchi" EXACT [OBOL:automatic] synonym: "basal lamina of bronchial trunk" EXACT [OBOL:automatic] synonym: "basal lamina of bronchus" EXACT [OBOL:automatic] @@ -255921,6 +262586,8 @@ name: cervix epithelium def: "An epithelium that is part of a uterine cervix [Automatically generated definition]." [OBOL:automatic] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cervical canal epithelial tissue" EXACT [OBOL:automatic] synonym: "cervical canal epithelium" EXACT [OBOL:automatic] @@ -255946,6 +262613,8 @@ property_value: structure_notes "The epithelium of the cervix is varied. The ect id: UBERON:0004802 name: respiratory tract epithelium def: "The pseudostratified ciliated epithelium that lines much of the conducting portion of the airway, including part of the nasal cavity and larynx, the trachea, and bronchi." [ISBN:0-683-40008-8, MGI:anna, MP:0010942] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "airway epithelium" RELATED [BTO:0000419] synonym: "epithelial tissue of respiratory tract" EXACT [OBOL:automatic] @@ -255970,6 +262639,8 @@ relationship: part_of UBERON:0000072 ! proximo-distal subdivision of respiratory id: UBERON:0004803 name: penis epithelium def: "An epithelium that is part of a penis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of penis" EXACT [OBOL:automatic] synonym: "epithelium of penis" EXACT [OBOL:automatic] synonym: "penis epithelial tissue" EXACT [OBOL:automatic] @@ -255987,6 +262658,8 @@ id: UBERON:0004804 name: oviduct epithelium def: "An epithelium that is part of a oviduct [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "columnar epithelium of the fallopian tube" RELATED [BTO:0002402] synonym: "columnar epithelium of the oviduct" RELATED [BTO:0002402] synonym: "epithelial tissue of oviduct" EXACT [OBOL:automatic] @@ -256011,6 +262684,8 @@ property_value: external_ontology_notes "in FMA, epithelium of uterine tube is a id: UBERON:0004805 name: seminal vesicle epithelium def: "An epithelium that is part of a seminal vesicle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of seminal gland" EXACT [OBOL:automatic] synonym: "epithelial tissue of seminal vesicle" EXACT [OBOL:automatic] synonym: "epithelium of seminal gland" EXACT [OBOL:automatic] @@ -256034,6 +262709,8 @@ relationship: part_of UBERON:0000998 ! seminal vesicle id: UBERON:0004806 name: vas deferens epithelium def: "An epithelium that is part of a vas deferens [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "deferent duct epithelial tissue" EXACT [OBOL:automatic] synonym: "deferent duct epithelium" EXACT [OBOL:automatic] synonym: "ductus deferens epithelial tissue" EXACT [OBOL:automatic] @@ -256068,6 +262745,8 @@ relationship: part_of UBERON:0001000 ! vas deferens id: UBERON:0004807 name: respiratory system epithelium def: "An epithelium that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "apparatus respiratorius epithelial tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius epithelium" EXACT [OBOL:automatic] @@ -256088,6 +262767,8 @@ relationship: part_of UBERON:0001004 ! respiratory system id: UBERON:0004808 name: gastrointestinal system epithelium def: "An epithelium that is part of a digestive system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "digestive system epithelial tissue" EXACT [OBOL:automatic] synonym: "digestive system epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of digestive system" EXACT [OBOL:automatic] @@ -256106,6 +262787,8 @@ relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal syste id: UBERON:0004809 name: salivary gland epithelium def: "An epithelium that is part of a salivary gland [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epithelial tissue of salivary gland" EXACT [OBOL:automatic] synonym: "epithelium of salivary gland" EXACT [OBOL:automatic] @@ -256124,6 +262807,8 @@ relationship: part_of UBERON:0001044 ! saliva-secreting gland id: UBERON:0004810 name: nephron tubule epithelium def: "The cellular avascular layer of the renal tubule luminar surfaces." [MGI:csmith, MP:0009640] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "kidney tubule epithelium" EXACT [MA:0001681] xref: BTO:0005239 @@ -256145,6 +262830,8 @@ property_value: editor_note "See https://github.com/obophenotype/uberon/issues/1 id: UBERON:0004811 name: endometrium epithelium def: "An epithelium that is part of an endometrium [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "endometrium epithelial tissue" EXACT [OBOL:automatic] synonym: "epithelial tissue of endometrium" EXACT [OBOL:automatic] @@ -256165,6 +262852,8 @@ property_value: taxon_notes "In rodents and primates, the uterine epithelium (th id: UBERON:0004812 name: male prepuce epithelium def: "An epithelium that is part of a prepuce of penis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of foreskin" EXACT [OBOL:automatic] synonym: "epithelial tissue of penile prepuce" EXACT [OBOL:automatic] synonym: "epithelial tissue of prepuce" BROAD [OBOL:automatic] @@ -256195,6 +262884,8 @@ property_value: editor_note "NCITA term may be sex-neutral" xsd:string id: UBERON:0004813 name: seminiferous tubule epithelium def: "The stratified epithelial lining of the seminiferous tubules, consisting of the developing spermatozoa and the supporting Sertoli cells, which are tall, columnar type cells that line the tubule." [MGI:csmith, MP:0011750] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epithelial tissue of seminiferous tubule" EXACT [OBOL:automatic] synonym: "epithelial tissue of seminiferous tubule of testis" EXACT [OBOL:automatic] @@ -256233,6 +262924,8 @@ relationship: part_of UBERON:0001343 ! seminiferous tubule of testis id: UBERON:0004814 name: upper respiratory tract epithelium def: "An epithelium that is part of a upper respiratory tract [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of upper respiratory tract" EXACT [OBOL:automatic] synonym: "epithelium of upper respiratory tract" EXACT [OBOL:automatic] synonym: "upper respiratory tract epithelial tissue" EXACT [OBOL:automatic] @@ -256247,6 +262940,8 @@ relationship: part_of UBERON:0001557 ! upper respiratory tract id: UBERON:0004815 name: lower respiratory tract epithelium def: "An epithelium that is part of a lower respiratory tract [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of lower respiratory tract" EXACT [OBOL:automatic] synonym: "epithelium of lower respiratory tract" EXACT [OBOL:automatic] synonym: "lower respiratory tract epithelial tissue" EXACT [OBOL:automatic] @@ -256261,6 +262956,8 @@ relationship: part_of UBERON:0001558 ! lower respiratory tract id: UBERON:0004816 name: larynx epithelium def: "An epithelium that is part of a larynx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epithelial tissue of larynx" EXACT [OBOL:automatic] synonym: "epithelium of larynx" EXACT [OBOL:automatic] @@ -256282,6 +262979,8 @@ property_value: structure_notes "composed of squamous epithelium in the upper la id: UBERON:0004817 name: lacrimal gland epithelium def: "An epithelium that is part of a lacrimal gland [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of lacrimal gland" EXACT [OBOL:automatic] synonym: "epithelium of lacrimal gland" EXACT [OBOL:automatic] synonym: "lacrimal gland epithelial tissue" EXACT [OBOL:automatic] @@ -256296,6 +262995,8 @@ relationship: part_of UBERON:0001817 ! lacrimal gland id: UBERON:0004818 name: terminal bronchus epithelium def: "An epithelium that is part of a terminal bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of terminal bronchus" EXACT [OBOL:automatic] synonym: "epithelium of terminal bronchus" EXACT [OBOL:automatic] synonym: "terminal bronchus epithelial tissue" EXACT [OBOL:automatic] @@ -256310,6 +263011,8 @@ relationship: part_of UBERON:0002041 ! terminal bronchus id: UBERON:0004819 name: kidney epithelium def: "The cellular avascular layer of the kidney luminar surfaces." [MGI:csmith, MP:0004967] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epithelial tissue of kidney" EXACT [OBOL:automatic] synonym: "epithelium of kidney" EXACT [OBOL:automatic] @@ -256329,6 +263032,8 @@ relationship: part_of UBERON:0002113 ! kidney id: UBERON:0004820 name: bile duct epithelium def: "Any epithelium that lines one of the bile ducts." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "biliary duct epithelium" EXACT [OBOL:automatic] synonym: "epithelium of bile duct" EXACT [OBOL:automatic] @@ -256350,6 +263055,8 @@ property_value: external_definition "The irregularly shaped proliferating bile d id: UBERON:0004821 name: pulmonary alveolus epithelium def: "The epithelial layer of the alveoli[MP]. The layer of cells covering the lining of the tiny air sacs at the end of the bronchioles[BTO]." [BTO:0003511, MP:0010898] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "alveolar epithelium" RELATED [EMAPA:35121] synonym: "alveolus epithelial tissue" EXACT [OBOL:automatic] @@ -256378,6 +263085,8 @@ relationship: part_of UBERON:0004894 {source="FMA"} ! alveolar wall id: UBERON:0004822 name: extrahepatic bile duct epithelium def: "An epithelium that is part of a extrahepatic bile duct [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of extrahepatic bile duct" EXACT [OBOL:automatic] synonym: "epithelium of extrahepatic bile duct" EXACT [OBOL:automatic] synonym: "extrahepatic bile duct epithelial tissue" EXACT [OBOL:automatic] @@ -256395,6 +263104,8 @@ relationship: part_of UBERON:0003703 ! extrahepatic bile duct id: UBERON:0004823 name: intrahepatic bile duct epithelium def: "An epithelium that is part of a intrahepatic bile duct [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelial tissue of intrahepatic bile duct" EXACT [OBOL:automatic] synonym: "epithelium of intrahepatic bile duct" EXACT [OBOL:automatic] synonym: "intrahepatic bile duct epithelial tissue" EXACT [OBOL:automatic] @@ -256412,6 +263123,8 @@ relationship: part_of UBERON:0003704 ! intrahepatic bile duct id: UBERON:0004825 name: dental lamina def: "A band of ectodermal cells growing from the epithelium of the embryonic jaws into the underlying mesenchyme and giving rise to the primordia of the enamel organs of the teeth." [http://medical-dictionary.thefreedictionary.com/dental+lamina] +subset: human_subset +subset: mouse_subset synonym: "embryonic dental lamina" EXACT [] synonym: "fetal dental lamina" RELATED [] synonym: "lamina dentalis" RELATED OMO:0003011 [Wikipedia:Dental_lamina] @@ -256434,6 +263147,8 @@ property_value: taxon_notes "In the epidermis of embryonic birds, there remains id: UBERON:0004827 name: thyroid gland medulla def: "A medulla that is part of a thyroid [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "medulla of thyroid" EXACT [OBOL:automatic] synonym: "medulla of thyroid follicle" EXACT [OBOL:automatic] synonym: "medulla of thyroid gland" EXACT [OBOL:automatic] @@ -256453,6 +263168,8 @@ relationship: part_of UBERON:0002046 ! thyroid gland id: UBERON:0004829 name: urethra skeletal muscle tissue def: "A portion of skeletal muscle tissue that is part of a urethra [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "skeletal muscle of urethra" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of urethra" EXACT [OBOL:automatic] synonym: "urethra skeletal muscle" RELATED [MA:0001690] @@ -256470,6 +263187,8 @@ relationship: part_of UBERON:0003829 ! urethra muscle tissue id: UBERON:0004830 name: respiratory system skeletal muscle def: "A portion of skeletal muscle tissue that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "respiratory system skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "skeletal muscle of respiratory system" EXACT [OBOL:automatic] @@ -256487,6 +263206,8 @@ id: UBERON:0004831 name: esophagus skeletal muscle def: "A portion of skeletal muscle tissue that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] comment: Most muscle tissue lining the digestive tract is smooth, but part of the externa of the esophagus is skeletal +subset: human_subset +subset: mouse_subset synonym: "esophagus skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle of esophagus" EXACT [OBOL:automatic] xref: EMAPA:36523 @@ -256501,6 +263222,8 @@ relationship: part_of UBERON:0003832 ! esophagus muscle id: UBERON:0004832 name: anal region skeletal muscle def: "A portion of skeletal muscle tissue that is part of an anal region [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anal part of perineum skeletal muscle" EXACT [OBOL:automatic] synonym: "anal part of perineum skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "anal region skeletal muscle tissue" EXACT [OBOL:automatic] @@ -256523,6 +263246,8 @@ relationship: part_of UBERON:0001353 ! anal region id: UBERON:0004833 name: lip skeletal muscle def: "A portion of skeletal muscle tissue that is part of a lip [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lip skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle of lip" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of lip" EXACT [OBOL:automatic] @@ -256538,6 +263263,8 @@ property_value: editor_note "this class is derived from MA. Consider re-modeling id: UBERON:0004834 name: hepatic duct smooth muscle def: "Smooth muscle tissue in all or part of a hepatic duct." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: EMAPA:37598 {source="MA:th"} xref: MA:0001640 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure @@ -256550,6 +263277,8 @@ relationship: part_of UBERON:0005171 ! hepatic duct id: UBERON:0004835 name: epididymis smooth muscle def: "A portion of smooth muscle tissue that is part of a epididymis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epididymis involuntary muscle" EXACT [OBOL:automatic] synonym: "epididymis non-striated muscle" EXACT [OBOL:automatic] synonym: "epididymis smooth muscle tissue" EXACT [OBOL:automatic] @@ -256569,6 +263298,8 @@ id: UBERON:0004848 name: respiratory system arterial endothelium def: "An endothelium of artery that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "apparatus respiratorius arterial endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius artery endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius endothelium of artery" EXACT [OBOL:automatic] @@ -256597,6 +263328,8 @@ id: UBERON:0004849 name: respiratory system venous endothelium def: "An endothelium of vein that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "apparatus respiratorius endothelium of vein" EXACT [OBOL:automatic] synonym: "apparatus respiratorius vein endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius venous endothelium" EXACT [OBOL:automatic] @@ -256623,6 +263356,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0004850 name: lymph node endothelium def: "An endothelium that is part of a lymph node [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "endothelium of lymph node" EXACT [OBOL:automatic] xref: EMAPA:35526 xref: MA:0000741 @@ -256636,6 +263371,8 @@ id: UBERON:0004851 name: aorta endothelium def: "The thin layer of flat cells that line the aorta and form a barrier between circulating blood in the lumen and the rest of the vessel wall." [MGI:csmith, MP:0009864] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "adult aorta endothelium" EXACT [OBOL:automatic] synonym: "aortic endothelium" RELATED [BTO:0000394] @@ -256662,6 +263399,8 @@ relationship: part_of UBERON:0000947 ! aorta id: UBERON:0004852 name: cardiovascular system endothelium def: "An endothelium that is part of the cardiovascular system." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "endothelia" RELATED OMO:0003004 [ZFA:0001639] synonym: "vascular endothelia" RELATED OMO:0003004 [XAO:0000356] @@ -256687,6 +263426,8 @@ property_value: homology_notes "Vertebrates and a very few invertebrates such as id: UBERON:0004854 name: gastrointestinal system mesentery def: "A mesentery that is part of a digestive system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "digestive system mesentery" EXACT [OBOL:automatic] synonym: "mesentery of digestive system" EXACT [OBOL:automatic] @@ -256703,6 +263444,8 @@ relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal syste id: UBERON:0004857 name: skeletal muscle connective tissue def: "A connective tissue that surrounds a skeletal muscle tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of skeletal muscle" EXACT [OBOL:automatic] synonym: "connective tissue of skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "portion of connective tissue of skeletal muscle" EXACT [OBOL:automatic] @@ -256726,6 +263469,8 @@ relationship: surrounds UBERON:0001134 ! skeletal muscle tissue [Term] id: UBERON:0004858 name: cellular cartilage +subset: human_subset +subset: mouse_subset xref: EMAPA:37473 {source="MA:th"} xref: MA:0000105 xref: SCTID:81997001 @@ -256736,6 +263481,8 @@ id: UBERON:0004859 name: eye gland def: "A gland that is part of a eye. The eye is a compound unit which depending on the species may consist of an eyeballs plus associated ducts and integumentary structures. Eye glands therefore include the various types of lacrimal gland, the various types of apocrine and sebaceous glands associated with the eyelid." [http://orcid.org/0000-0002-6601-2165] comment: Examples: harderian gland, accessory lacrimal gland, gland of Moll, gland of Zeis, nictitating membrane glands +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "eye-associated gland" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "gland of eye" EXACT [OBOL:automatic] @@ -256756,6 +263503,8 @@ consider: UBERON:0003053 id: UBERON:0004861 name: right lung alveolus def: "An alveolus that is part of a right lung [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "alveolus of right lung" EXACT [OBOL:automatic] xref: EMAPA:35997 xref: MA:0001786 @@ -256771,6 +263520,8 @@ relationship: part_of UBERON:0006526 ! right lung alveolar system id: UBERON:0004862 name: left lung alveolus def: "An alveolus that is part of a left lung [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "alveolus of left lung" EXACT [OBOL:automatic] synonym: "alveolus of lobe of left lung" EXACT [OBOL:automatic] xref: EMAPA:19182 @@ -256787,6 +263538,8 @@ relationship: part_of UBERON:0006525 ! left lung alveolar system id: UBERON:0004863 name: thoracic sympathetic nerve trunk def: "A sympathetic nerve trunk that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "nerve trunk of sympathetic nervous system of thorax" EXACT [OBOL:automatic] synonym: "nerve trunk of sympathetic part of autonomic division of nervous system of thorax" EXACT [OBOL:automatic] synonym: "sympathetic nerve trunk of thorax" EXACT [OBOL:automatic] @@ -256813,6 +263566,8 @@ id: UBERON:0004864 name: vasculature of retina def: "A vasculature that is part of a retina [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "retina vasculature" EXACT [GO:0061298] synonym: "retina vasculature of camera-type eye" EXACT [GO:0061298] @@ -256836,6 +263591,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0004865 name: actinopterygian parietal bone def: "Dermal bone that covers the otic region and may articulate with its antimere medially, with the frontal bone anteriorly, the pterotic laterally, the supraoccipital medio-posteriorly, and the epiotic and extrascapula latero-posteriorly. The parietal is a paired bone.[TAO]." [TAO:0000486, TAO:GA_TG] +subset: human_subset +subset: mouse_subset synonym: "actinopterygian parietal" EXACT [] synonym: "frontal bone" NARROW [FMA:52734] synonym: "parietal bone" NARROW SENSU [TAO:0000486] @@ -256862,6 +263619,8 @@ property_value: homology_notes "The homologization of cranial bones of actinopte id: UBERON:0004866 name: actinopterygian frontal bone def: "Dermal bone that bears part of the supraorbital canal and usually covers a large area of the neurocranium occupying part of the ethmoidal, orbitosphenoid, and otic regions. Commonly, the frontal bone articulates with its antimere medially, with lateral ethmoid, orbitosphenoid and pterosphenoid ventrolaterally, with supraorbital bone(s), autosphenotic and pterotic laterally, and with parietal posteriorly.[TAO]." [TAO:0000514] +subset: human_subset +subset: mouse_subset synonym: "actinopterygian frontal" EXACT [TAO:0000514] synonym: "actinopterygian frontal bone" EXACT [TAO:0000514] synonym: "frontal bone" NARROW [TAO:0000514] @@ -256887,6 +263646,8 @@ property_value: taxon_notes "The frontal bone in teleost fish is the homolog of id: UBERON:0004867 name: orbital cavity def: "Anatomical cavity bounded by the orbital region of the cranium and forming the location of some or all of the eye." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "orbit" RELATED [AAO:0000343] xref: AAO:0000343 xref: FMA:84961 @@ -256904,6 +263665,7 @@ property_value: external_ontology_notes "note that the AAO and ZFA class is a ca id: UBERON:0004868 name: tapetum lucidum of camera-type eye def: "A layer of tissue in the eye of many vertebrate animals, that lies immediately behind or sometimes within the retina. It reflects visible light back through the retina, increasing the light available to the photoreceptors." [PMID:14738502, Wikipedia:Tapetum_lucidum] +subset: mouse_subset synonym: "tapeta lucida" EXACT OMO:0003004 [] synonym: "tapetum lucidum" EXACT [] xref: Wikipedia:Tapetum_lucidum @@ -256935,6 +263697,8 @@ relationship: part_of UBERON:0015238 {source="cjm"} ! pineal complex id: UBERON:0004870 name: superficial cervical lymph node def: "A group of nodes lying along the external jugular vein; they drain the skin and superficial structures over the region of the sternocleidomastoid muscle and anterior cervical regions. Efferent vessels drain to the deep cervical lymph nodes. Lymph nodes can be further subdivided into anterior and lateral groupings." [CL:tm, https://github.com/obophenotype/uberon/issues/5, ref:Stedmans, Wikipedia:Superficial_cervical_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "nodi lymphoidei cervicales" RELATED OMO:0003011 [Wikipedia:Superficial_cervical_lymph_nodes] synonym: "prescapular lymph node" RELATED [CL:tm] xref: EMAPA:37725 {source="MA:th"} @@ -256955,6 +263719,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4e/Il id: UBERON:0004871 name: somatic layer of lateral plate mesoderm def: "Layer of lateral plate mesoderm that forms the future body wall - underlies the ectoderm[WP]." [Wikipedia:Lateral_plate_mesoderm#Division_into_layers] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "outer layer of lateral plate mesoderm" EXACT [] synonym: "parietal mesoderm" RELATED [ISBN:9780878932504] @@ -256973,6 +263739,8 @@ property_value: editor_note "check BILA" xsd:string id: UBERON:0004872 name: splanchnic layer of lateral plate mesoderm def: "Layer of lateral plate mesoderm that forms the circulatory system and future gut wall - overlies endoderm[WP]." [Wikipedia:Lateral_plate_mesoderm#Division_into_layers] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "inner layer of lateral plate mesoderm" EXACT [] synonym: "splanchnic mesoderm" RELATED [ISBN:9780878932504] @@ -256991,6 +263759,8 @@ property_value: external_ontology_notes "We group the BILA class here. Consideri id: UBERON:0004873 name: splanchnopleure def: "A structure created during embryogenesis when the lateral mesoderm splits into two layers - the inner (or splanchnic) layer adheres to the endoderm, and with it forms the splanchnopleure[WP]." [Wikipedia:Splanchnopleure] +subset: human_subset +subset: mouse_subset synonym: "ventral splanchnic mesoderm" RELATED [Wikipedia:Intraembryonic_coelom] xref: EHDAA2:0001903 xref: EHDAA:383 @@ -257011,6 +263781,8 @@ property_value: editor_note "TODO - check relationship to LPM" xsd:string id: UBERON:0004874 name: somatopleure def: "A structure created during embryogenesis when the lateral mesoderm splits into two layers - the outer (or somatic) layer becomes applied to the inner surface of the ectoderm, and with it forms the somatopleure.[WP]." [Wikipedia:Somatopleure] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001847 xref: EHDAA:381 xref: EMAPA:16180 @@ -257032,6 +263804,8 @@ id: UBERON:0004875 name: nephrogenic cord def: "A portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord] comment: part_of or develops_from urogenital ridge? +subset: human_subset +subset: mouse_subset synonym: "chorda nephrogenica" RELATED OMO:0003011 [Wikipedia:Nephrogenic_cord] xref: FMA:72168 xref: NCIT:C34219 @@ -257046,6 +263820,8 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:0004876 name: urogenital fold def: "One of of the pair of folds derived from the cloacal folds which give rise to a portion of the external genitalia; in male embryos they close over the urethral plate and fuse to form the spongy (penile) urethra and ventral aspect of the penis, not including the glans; failure of fusion of the urethral folds leads to hypospadias; in female embryos they fuse only anterior to the anus and form the labia minora[MP]." [MP:0011835, MP:anna, Wikipedia:Urogenital_folds] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "urethral fold" EXACT [EMAPA:30888] synonym: "urogenital fold" EXACT [EHDAA2:0004022, MP:0011835] @@ -257066,6 +263842,8 @@ property_value: terminology_notes "Less commonly, urogenital fold refers to the id: UBERON:0004877 name: visceral endoderm def: "Visceral endoderm, a population of extraembyonic endoderm, is an extraembryonic tissue that functions in a regulatory capacity but does not contribute directly to the formation of any adult organs[PMID:15905405]. primitive endoderm-derived tissue which remains in contact with and surrounds the extra-embryonic ectoderm and the epiblast and provides signals for the differentiation and patterning of the epiblast; a small number of visceral endoderm cells also contribute to the endoderm of the embryonic gut[MP]." [MP:0011186, PMID:15905405] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: BTO:0003487 xref: EMAPA:16058 @@ -257078,6 +263856,8 @@ property_value: terminology_notes "Gilbert uses visceral endoderm as a synonym f id: UBERON:0004878 name: distal visceral endoderm def: "Precursors of the anterior visceral endoderm that arises at the distal tip of the embryo[MP]." [MP:0010126] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0004877 ! visceral endoderm @@ -257086,6 +263866,8 @@ id: UBERON:0004879 name: marginal zone of embryo def: "Belt-like region of presumptive mesoderm at the equator of the late blastula." [XAO:0000068] subset: early_development +subset: human_subset +subset: mouse_subset synonym: "margin" BROAD [ZFA:0000038] synonym: "marginal zone" BROAD [XAO:0000068] synonym: "margins" RELATED OMO:0003004 [TAO:0000038] @@ -257101,6 +263883,8 @@ id: UBERON:0004880 name: chordamesoderm def: "The central region of trunk mesoderm. This tissue forms the notochord." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "axial chorda mesoderm" EXACT [ZFA:0000091] synonym: "chorda mesoderm" EXACT [] @@ -257121,6 +263905,8 @@ property_value: external_ontology_notes "WP treats this as synonym of axial meso id: UBERON:0004882 name: eponychium def: "Thickened layer of skin surrounding fingernails and toenails. Beneath the cuticle is a thin layer of a membrane known as the pterygium. The function is to protect the area between the nail and epidermis from exposure to harmful bacteria. The vascularization pattern is similar to that of perionychium. The eponychium is the end of the proximal fold that folds back upon itself to shed an epidermal layer of skin onto the newly formed nail plate. This layer of non-living, almost invisible skin is the cuticle that 'rides out' on the surface of the nail plate. Together, the eponychium and the cuticle form a protective seal. The cuticle on the nail plate is dead cells and is often removed during manicure, but the eponychium is living cells and should not be touched.[6] The perionyx is the projecting edge of the eponychium covering the proximal strip of the lunula[WP]." [Wikipedia:Eponychium] +subset: human_subset +subset: mouse_subset synonym: "cuticle" RELATED [MA:0002704] xref: EMAPA:37507 {source="MA:th"} xref: FMA:77859 @@ -257138,6 +263924,8 @@ id: UBERON:0004883 name: lung mesenchyme def: "The mass of tissue made up of mesenchymal cells in the lung." [GO:0060484] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lung-associated mesenchyme" EXACT [GO:0060484] synonym: "mesenchyme of lung" EXACT [OBOL:automatic] @@ -257156,6 +263944,8 @@ id: UBERON:0004884 name: lobar bronchus mesenchyme def: "The mass of tissue composed of mesenchymal cells in the lobar bronchus.." [GO:0060483] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "mesenchyme of lobar bronchus" EXACT [OBOL:automatic] xref: EMAPA:32698 is_a: UBERON:0004883 ! lung mesenchyme @@ -257171,6 +263961,8 @@ id: UBERON:0004885 name: hilum alt_id: UBERON:0004460 def: "An anatomical cavity, depression or pit where structures are attached." [Wikipedia:Hilum_of_kidney_of_lung_of_lymph_node] +subset: human_subset +subset: mouse_subset synonym: "hilus" EXACT [Wikipedia:Hilum] xref: FMA:57836 xref: galen:Hilum @@ -257184,6 +263976,8 @@ property_value: external_ontology_notes "Galen and NCITA refer to the generic st id: UBERON:0004886 name: lung hilus def: "A depression on the surface of the lung where the bronchus, blood vessels and nerves enter." [GOC:lung_mtg, ISBN:0721662544] +subset: human_subset +subset: mouse_subset synonym: "hilum of lung" EXACT [] synonym: "hilum pulmonis" EXACT OMO:0003011 [FMA:7330, FMA:TA] synonym: "hilus of lung" EXACT [OBOL:automatic] @@ -257206,6 +264000,8 @@ relationship: part_of UBERON:0002048 ! lung id: UBERON:0004887 name: left lung hilus def: "A lung hilus that is part of the left lung." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hilum of left lung" EXACT [] synonym: "hilus of left lung" EXACT [OBOL:automatic] synonym: "left lung hilum" EXACT [OBOL:automatic] @@ -257230,6 +264026,8 @@ property_value: external_definition "The part of the left lung that is not cover id: UBERON:0004888 name: right lung hilus def: "A lung hilus that is part of the right lung." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hilum of right lung" EXACT [] synonym: "hilus of right lung" EXACT [OBOL:automatic] synonym: "right lung hilum" EXACT [OBOL:automatic] @@ -257254,6 +264052,8 @@ property_value: external_definition "The part of the right lung that is not cove id: UBERON:0004889 name: lobar bronchus vasculature def: "Vasculature that is composed of the tubule structures that carry blood or lymph in the lungs." [LG:0012616] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000102 ! lung vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0002183 ! lobar bronchus @@ -257263,6 +264063,8 @@ relationship: part_of UBERON:0002183 ! lobar bronchus id: UBERON:0004890 name: right lung accessory lobe def: "A specialized lobe of the right lung that extends to the left side of the organism." [LG:0012619] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "diaphragmatic lobe" NARROW [ISBN:0123813611] synonym: "intermediate lobe of right lung" NARROW [ISBN:0123813611] @@ -257288,6 +264090,8 @@ is_obsolete: true id: UBERON:0004892 name: lobar bronchus alveolar system def: "The lobar bronchus alveolar system is where molecules of oxygen and carbon dioxide are passively exchanged, by diffusion, between the gaseous environment and the blood in the lobar bronchus." [LG:0012622] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0002183 ! lobar bronchus @@ -257296,6 +264100,8 @@ relationship: part_of UBERON:0002183 ! lobar bronchus id: UBERON:0004893 name: interalveolar septum def: "A the thin septum that separates adjacent pulmonary alveoli, containing connective tissue constituents of the respiratory tissue and the capillary network of the blood supply of the lung." [LG:0012625, Wikipedia:Alveolar_septum] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "alveolar septum" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "septum interalveolare" RELATED [BTO:0003149] @@ -257317,6 +264123,8 @@ id: UBERON:0004894 name: alveolar wall alt_id: UBERON:0008872 def: "A wall that contains the alveoli." [LG:0012626, MP:0010903] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "alveolus wall" RELATED [EMAPA:35120] synonym: "pulmonary alveolar wall" EXACT [FMA:14117] @@ -257341,6 +264149,8 @@ property_value: external_ontology_notes "part of wall in FMA" xsd:string {extern id: UBERON:0004895 name: alveolar smooth muscle def: "Alveolar smooth muscle is a type of non-striated muscle, found within the walls of the alveolus." [LG:0012628] +subset: human_subset +subset: mouse_subset xref: EMAPA:35122 xref: MA:0002759 is_a: UBERON:0004233 ! lower respiratory tract smooth muscle @@ -257352,6 +264162,8 @@ relationship: part_of UBERON:0002299 ! alveolus of lung id: UBERON:0004896 name: right lung accessory lobe lobar bronchus def: "The right lung accessory lobe lobar bronchus is the major airway within the right lung accessory lobe that starts at the division of the bronchus on the right side and ends at the point of its own subdivision into tertiary or segmental bronchi." [LG:0012636] +subset: human_subset +subset: mouse_subset synonym: "lobar bronchus of accessory lobe" BROAD [EMAPA:17982] synonym: "lobar bronchus of right lung accessory lobe" EXACT [VHOG:0000239] xref: EHDAA2:0001736 @@ -257366,6 +264178,8 @@ relationship: part_of UBERON:0004890 ! right lung accessory lobe id: UBERON:0004897 name: right lung accessory lobe lobar bronchus mesenchyme def: "The right lung accessory lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung accessory lobe lobar bronchus." [LG:0012640] +subset: human_subset +subset: mouse_subset xref: EMAPA:17983 is_a: UBERON:0004901 ! right lung lobar bronchus mesenchyme intersection_of: UBERON:0003104 ! mesenchyme @@ -257383,6 +264197,8 @@ is_obsolete: true id: UBERON:0004899 name: right lung cranial lobe lobar bronchus mesenchyme def: "The right lung cranial lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung cranial lobe lobar bronchus." [LG:0012659] +subset: human_subset +subset: mouse_subset xref: EMAPA:17993 is_a: UBERON:0004901 ! right lung lobar bronchus mesenchyme intersection_of: UBERON:0003104 ! mesenchyme @@ -257395,6 +264211,8 @@ relationship: part_of UBERON:0003404 ! lobar bronchus of right lung id: UBERON:0004900 name: right lung middle lobe lobar bronchus mesenchyme def: "The right lung middle lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung middle lobe lobar bronchus." [LG:0012672] +subset: human_subset +subset: mouse_subset xref: EMAPA:17999 is_a: UBERON:0004901 ! right lung lobar bronchus mesenchyme intersection_of: UBERON:0003104 ! mesenchyme @@ -257407,6 +264225,8 @@ relationship: part_of UBERON:0003404 ! lobar bronchus of right lung id: UBERON:0004901 name: right lung lobar bronchus mesenchyme def: "The right lung lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung lobar bronchus." [LG:0012681] +subset: human_subset +subset: mouse_subset xref: EMAPA:17665 is_a: UBERON:0004884 ! lobar bronchus mesenchyme is_a: UBERON:0009603 ! right lung associated mesenchyme @@ -257420,6 +264240,8 @@ relationship: part_of UBERON:0002183 ! lobar bronchus id: UBERON:0004902 name: urogenital sinus epithelium def: "The fetal urogenital sinus (from which the prostate derives) is a simple cylinder of stratified basal epithelium, surrounded by mesenchyme and positioned between the embryonic bladder and pelvic urethra." [PMID:18977204] +subset: human_subset +subset: mouse_subset synonym: "epithelium of urogenital sinus" EXACT [OBOL:automatic] synonym: "UGE" EXACT [PMID:18977204] xref: EHDAA2:0004061 @@ -257438,6 +264260,8 @@ property_value: external_ontology_notes "we follow EHDAA2 in dividing the UGS in id: UBERON:0004903 name: bronchoalveolar duct junction def: "A branch point connecting the respiratory bronchioles to the alveolar ducts[MP]." [MP:0004390] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37448 {source="MA:th"} is_a: UBERON:0007651 ! anatomical junction @@ -257452,6 +264276,8 @@ def: "A neuron projection bundle that connects the retina or its analog in the e comment: for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II) subset: grouping_class subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "optic nerve" BROAD [BTO:0000966] synonym: "optic nerve (generic)" EXACT [] @@ -257474,6 +264300,8 @@ id: UBERON:0004905 name: articulation def: "Anatomical structure that connects two or more adjacent skeletal elements or hardened body parts." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "joint" NARROW [] xref: FBbt:00005811 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034921 ! multi organ part structure @@ -257483,6 +264311,8 @@ relationship: part_of UBERON:0004770 ! articular system id: UBERON:0004906 name: ectodermal part of digestive tract def: "A portion of the gut that is derived from ectoderm." [GO:0007439] +subset: human_subset +subset: mouse_subset synonym: "ectodermal gut" EXACT [] synonym: "gut ectoderm" EXACT [EMAPA:32930] is_a: UBERON:0004121 ! ectoderm-derived structure @@ -257497,6 +264327,8 @@ relationship: part_of UBERON:0001555 ! digestive tract id: UBERON:0004907 name: lower digestive tract def: "The region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "gut" BROAD [GO:0048565] synonym: "lower gastrointestinal tract" EXACT [] @@ -257517,6 +264349,8 @@ property_value: external_ontology_notes "WP: small intestine, large intestine, a id: UBERON:0004908 name: upper digestive tract def: "The region of the digestive tract extending from the mouth cavity through pharynx esophagus stomach and duodenum." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "upper gastrointestinal tract" EXACT [] synonym: "upper GI tract" EXACT [] @@ -257534,6 +264368,8 @@ property_value: external_ontology_notes "WP: small intestine, large intestine, a id: UBERON:0004909 name: epithelium of gonad def: "An epithelium surrounding a gonad." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "gonad epithelium" EXACT [OBOL:automatic] synonym: "gonadal epithelium" EXACT [OBOL:automatic] synonym: "gonadal sheath" RELATED [FBbt:00004859] @@ -257552,6 +264388,8 @@ property_value: editor_note "after reasoning this should subsume the more specif id: UBERON:0004910 name: epithelium of male gonad def: "An epithelium surrounding a testis." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "testis epithelium" EXACT [OBOL:automatic] xref: BTO:0001364 xref: EMAPA:17973 @@ -257565,6 +264403,8 @@ property_value: editor_note "after reasoning this should subsume the more specif id: UBERON:0004911 name: epithelium of female gonad def: "An epithelium surrounding an ovary." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ovarian epithelium" EXACT [OBOL:automatic] synonym: "ovarian sheath" NARROW SENSU [FBbt:00004896] synonym: "ovary epithelium" EXACT [OBOL:automatic] @@ -257578,6 +264418,8 @@ property_value: editor_note "after reasoning this should subsume the more specif [Term] id: UBERON:0004912 name: biliary bud +subset: human_subset +subset: mouse_subset synonym: "hepatic diverticulum" RELATED [EMAPA:16561] xref: EHDAA2:0000171 xref: EMAPA:16561 @@ -257597,6 +264439,8 @@ id: UBERON:0004913 name: hepatopancreatic ampulla def: "A dilation of the duodenal papilla that is the opening of the juncture of the common bile duct and the main pancreatic duct." [Wikipedia:Ampulla_of_Vater] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "ampulla biliaropancreatica" EXACT OMO:0003011 [FMA:15076, FMA:TA] synonym: "ampulla hepatopancreatica" RELATED OMO:0003011 [Wikipedia:Ampulla_of_Vater] @@ -257632,6 +264476,8 @@ property_value: external_definition "Ampulla formed by the union of the pancreat id: UBERON:0004914 name: duodenal papilla def: "One of the two small elevations on the mucosa of the duodenum, the major at the entrance of the conjoined pancreatic and common bile ducts and the minor at the entrance of the accessory pancreatic duct." [http://medical-dictionary.thefreedictionary.com/duodenal+papilla] +subset: human_subset +subset: mouse_subset synonym: "papilla duodenalis" EXACT [] synonym: "papilla duodeni" RELATED OMO:0003011 [Wikipedia:Major_duodenal_papilla] synonym: "papilla of duodenum" EXACT [] @@ -257650,6 +264496,8 @@ id: UBERON:0004915 name: sphincter of hepatopancreatic ampulla def: "Muscular valve that controls the flow of digestive juices (bile and pancreatic juice) through the ampulla of Vater into the second part of the duodenum. Relaxed by the hormone Cholecystokinin (CCK) via vasoactive intestinal polypeptide (VIP).[WP]." [Wikipedia:Sphincter_of_ampulla] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "hepatopancreatic ampullary sphincter" EXACT [FMA:15077] synonym: "musculus sphincter ampullae" EXACT [FMA:15077] synonym: "musculus sphincter ampullae hepatopancreatica" EXACT OMO:0003011 [FMA:15077, FMA:TA] @@ -257676,6 +264524,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/43/Gr id: UBERON:0004916 name: anal sphincter def: "A sphincter muscle that is part of a anal region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anal region sphincter" EXACT [] synonym: "sphincter analia" EXACT [] xref: EMAPA:36052 @@ -257689,6 +264539,8 @@ relationship: part_of UBERON:0001353 ! anal region id: UBERON:0004917 name: urethral sphincter def: "A sphincter muscle surrounding the urethra." [Wikipedia:Urethral_sphincter] +subset: human_subset +subset: mouse_subset synonym: "sphincter muscle of urethra" EXACT [] synonym: "sphincter of urethra" EXACT [] synonym: "sphincter urethrae" EXACT [] @@ -257709,6 +264561,8 @@ relationship: part_of UBERON:0001556 ! lower urinary tract id: UBERON:0004918 name: internal urethral sphincter def: "A urethral sphincter muscle which constricts the internal urethral orifice. It is the junction of the urethra with the urinary bladder. The muscle is made of smooth muscle, so therefore it is under involuntary control. It is kept tonically contracted by the sympathetic nervous system and during micturition, is relaxed via the parasympathetic nervous system. This is the primary muscle for preventing the release of urine[WP]." [Wikipedia:Internal_sphincter_muscle_of_urethra] +subset: human_subset +subset: mouse_subset synonym: "internal sphincter muscle of urethra" EXACT [] synonym: "internal sphincter of urethra" EXACT [] synonym: "internal urethral sphincter muscle" EXACT [] @@ -257730,6 +264584,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/ba/Gr [Term] id: UBERON:0004919 name: external urethral sphincter +subset: human_subset +subset: mouse_subset synonym: "annulus urethralis" EXACT [] synonym: "external sphincter muscle of urethra" EXACT [] synonym: "external sphincter of urethra" EXACT [] @@ -257767,6 +264623,8 @@ id: UBERON:0004921 name: subdivision of digestive tract def: "A proximal-distal subdivision of the digestive tract." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "alimentary system subdivision" RELATED [FMA:71131] synonym: "gut section" RELATED [FBbt:00100315] @@ -257787,6 +264645,8 @@ property_value: curator_notes "intended to denote both embryonic and adult struc id: UBERON:0004922 name: postnatal subventricular zone def: "A mitotically active layer of cells surrounding the brain ventricles in the adult that consists of migrating neuroblasts, astrocytes and transitory amplifying progenitor cells[MP]." [MP:0004275] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "adult subventricular zone" EXACT [MP:0004275] synonym: "brain subventricular zone" EXACT [MA:0000817] @@ -257827,6 +264687,8 @@ property_value: structure_notes "WP divides this into 4 layers." xsd:string id: UBERON:0004923 name: organ component layer def: "A part of a wall of an organ that forms a layer." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: upper_level xref: FMA:82485 is_a: UBERON:0000064 ! organ part @@ -257837,6 +264699,8 @@ relationship: part_of UBERON:0000060 ! anatomical wall id: UBERON:0004924 name: submucosa of pharynx def: "The tissue underlying the tunica mucosa of the pharynx." [BTO:0002113] +subset: human_subset +subset: mouse_subset synonym: "pharyngeal submucosa" EXACT [FMA:75144] synonym: "pharyngobasilar fascia" RELATED [] synonym: "pharynx submucosa" EXACT [OBOL:automatic] @@ -257857,6 +264721,8 @@ relationship: part_of UBERON:0001042 ! chordate pharynx id: UBERON:0004925 name: submucosa of laryngopharynx def: "A submucosa that is part of a hypopharynx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hypopharynx submucosa" EXACT [OBOL:automatic] synonym: "laryngeal pharynx submucosa" EXACT [OBOL:automatic] synonym: "laryngopharynx submucosa" EXACT [OBOL:automatic] @@ -257874,6 +264740,8 @@ relationship: part_of UBERON:0001051 ! hypopharynx id: UBERON:0004926 name: submucosa of cystic duct def: "A submucosa that is part of a cystic duct [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cystic duct submucosa" EXACT [OBOL:automatic] synonym: "cystic ductal submucosa" EXACT [FMA:18013] xref: FMA:18013 @@ -257887,6 +264755,8 @@ id: UBERON:0004927 name: submucosa of cecum def: "A submucosa that is part of a cecum [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "caecum submucosa" EXACT [OBOL:automatic] synonym: "cecum submucosa" EXACT [OBOL:automatic] synonym: "intestinum crassum caecum submucosa" EXACT [OBOL:automatic] @@ -257904,6 +264774,8 @@ id: UBERON:0004928 name: submucosa of appendix def: "A submucosa that is part of an appendix [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "appendiceal submucosa" EXACT [FMA:14992] synonym: "appendix submucosa" EXACT [OBOL:automatic] synonym: "caecal appendix submucosa" EXACT [OBOL:automatic] @@ -257924,6 +264796,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0004929 name: submucosa of ascending colon def: "A submucosa that is part of an ascending colon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ascending colon submucosa" EXACT [OBOL:automatic] xref: FMA:15006 is_a: UBERON:0003331 ! submucosa of colon @@ -257935,6 +264809,8 @@ relationship: part_of UBERON:0001156 ! ascending colon id: UBERON:0004930 name: submucosa of transverse colon def: "A submucosa that is part of a transverse colon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "transverse colon submucosa" EXACT [OBOL:automatic] xref: FMA:15013 is_a: UBERON:0003331 ! submucosa of colon @@ -257946,6 +264822,8 @@ relationship: part_of UBERON:0001157 ! transverse colon id: UBERON:0004931 name: submucosa of descending colon def: "A submucosa that is part of a descending colon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "descending colon submucosa" EXACT [OBOL:automatic] xref: FMA:15020 is_a: UBERON:0003331 ! submucosa of colon @@ -257957,6 +264835,8 @@ relationship: part_of UBERON:0001158 ! descending colon id: UBERON:0004932 name: submucosa of sigmoid colon def: "A submucosa that is part of a sigmoid colon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "sigmoid colon submucosa" EXACT [OBOL:automatic] xref: FMA:15027 is_a: UBERON:0003331 ! submucosa of colon @@ -257968,6 +264848,8 @@ relationship: part_of UBERON:0001159 ! sigmoid colon id: UBERON:0004933 name: submucosa of fundus of stomach def: "A submucosa that is part of a fundus of stomach [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fundus gastricus (ventricularis) submucosa" EXACT [OBOL:automatic] synonym: "fundus of stomach submucosa" EXACT [OBOL:automatic] synonym: "stomach fundus submucosa" EXACT [OBOL:automatic] @@ -257984,6 +264866,8 @@ relationship: part_of UBERON:0001160 ! fundus of stomach id: UBERON:0004934 name: submucosa of body of stomach def: "A submucosa that is part of a body of stomach [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "body of stomach submucosa" EXACT [OBOL:automatic] synonym: "corpus gastricum (ventriculare) submucosa" EXACT [OBOL:automatic] synonym: "gastric body submucosa" EXACT [OBOL:automatic] @@ -258001,6 +264885,8 @@ relationship: part_of UBERON:0001161 ! body of stomach id: UBERON:0004935 name: submucosa of cardia of stomach def: "A submucosa that is part of a cardia of stomach [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cardia of stomach submucosa" EXACT [OBOL:automatic] synonym: "cardial part of stomach submucosa" EXACT [OBOL:automatic] synonym: "gastric cardia submucosa" EXACT [OBOL:automatic] @@ -258020,6 +264906,8 @@ relationship: part_of UBERON:0001162 ! cardia of stomach id: UBERON:0004936 name: submucosa of pyloric antrum def: "A submucosa that is part of a pyloric antrum [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "antrum of stomach submucosa" EXACT [OBOL:automatic] synonym: "pyloric antrum submucosa" EXACT [OBOL:automatic] synonym: "stomach pyloric antrum submucosa" EXACT [OBOL:automatic] @@ -258035,6 +264923,8 @@ relationship: part_of UBERON:0001165 ! pyloric antrum id: UBERON:0004937 name: submucosa of pylorus def: "A submucosa that is part of a pylorus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pyloric part of stomach submucosa" EXACT [OBOL:automatic] synonym: "pyloric submucosa" EXACT [] synonym: "pylorus submucosa" EXACT [FMA:17462, OBOL:automatic] @@ -258052,6 +264942,8 @@ relationship: part_of UBERON:0001166 ! pylorus id: UBERON:0004938 name: submucosa of biliary tree def: "A submucosa that is part of a biliary tree [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "biliary tract submucosa" EXACT [OBOL:automatic] synonym: "biliary tree submucosa" EXACT [OBOL:automatic] synonym: "submucosa of biliary tract" EXACT [OBOL:automatic] @@ -258066,6 +264958,8 @@ relationship: part_of UBERON:0001173 ! biliary tree id: UBERON:0004939 name: submucosa of common bile duct def: "A submucosa that is part of a common bile duct [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "common bile duct submucosa" EXACT [OBOL:automatic] synonym: "common bile ductal submucosa" EXACT [FMA:18011] synonym: "ductus choledochus (biliaris) submucosa" EXACT [OBOL:automatic] @@ -258080,6 +264974,8 @@ relationship: part_of UBERON:0001174 ! common bile duct id: UBERON:0004940 name: submucosa of common hepatic duct def: "A submucosa that is part of a common hepatic duct [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "common hepatic duct submucosa" EXACT [OBOL:automatic] synonym: "common hepatic ductal submucosa" EXACT [FMA:18014] synonym: "hepatic duct submucosa" EXACT [OBOL:automatic] @@ -258094,6 +264990,8 @@ relationship: part_of UBERON:0001175 ! common hepatic duct id: UBERON:0004941 name: submucosa of right hepatic duct def: "A submucosa that is part of a right hepatic duct [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "right hepatic duct submucosa" EXACT [OBOL:automatic] synonym: "right hepatic ductal submucosa" EXACT [FMA:18015] xref: FMA:18015 @@ -258106,6 +265004,8 @@ relationship: part_of UBERON:0001176 ! right hepatic duct id: UBERON:0004942 name: submucosa of left hepatic duct def: "A submucosa that is part of a left hepatic duct [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left hepatic duct submucosa" EXACT [OBOL:automatic] synonym: "left hepatic ductal submucosa" EXACT [FMA:18017] xref: FMA:18017 @@ -258119,6 +265019,8 @@ id: UBERON:0004943 name: submucosa of urinary bladder def: "The submucous layer of the wall of the urinary bladder." [BTO:0002117] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "bladder submucosa" EXACT [OBOL:automatic] synonym: "submucosa of bladder" EXACT [OBOL:automatic] synonym: "submucous layer of urinary bladder" RELATED [BTO:0002117] @@ -258143,6 +265045,8 @@ id: UBERON:0004944 name: submucosa of trigone of urinary bladder def: "A submucosa that is part of a trigone of urinary bladder [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "deep trigone submucosa" EXACT [OBOL:automatic] synonym: "Lieutaud ' s trigone submucosa" EXACT [OBOL:automatic] synonym: "submucosa of deep trigone" EXACT [OBOL:automatic] @@ -258166,6 +265070,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0004945 name: submucosa of neck of urinary bladder def: "A submucosa that is part of a neck of urinary bladder [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bladder neck submucosa" EXACT [OBOL:automatic] synonym: "neck of bladder submucosa" EXACT [OBOL:automatic] synonym: "neck of urinary bladder submucosa" EXACT [OBOL:automatic] @@ -258187,6 +265093,8 @@ id: UBERON:0004946 name: submucosa of ileum def: "A submucosa that is part of a ileum [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ileal submucosa" EXACT [FMA:14957] synonym: "ileum submucosa" EXACT [OBOL:automatic] xref: FMA:14957 @@ -258201,6 +265109,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0004947 name: submucosa of right main bronchus def: "A submucosa that is part of a right main bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "right bronchus submucosa" EXACT [OBOL:automatic] synonym: "right main bronchial submucosa" EXACT [FMA:13139] synonym: "right main bronchus submucosa" EXACT [OBOL:automatic] @@ -258217,6 +265127,8 @@ relationship: part_of UBERON:0002177 ! right main bronchus id: UBERON:0004948 name: submucosa of left main bronchus def: "A submucosa that is part of a left main bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left bronchus submucosa" EXACT [OBOL:automatic] synonym: "left main bronchial submucosa" EXACT [FMA:13140] synonym: "left main bronchus submucosa" EXACT [OBOL:automatic] @@ -258233,6 +265145,8 @@ relationship: part_of UBERON:0002178 ! left main bronchus id: UBERON:0004949 name: submucosa of main bronchus def: "A submucosa that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchus principalis submucosa" EXACT [OBOL:automatic] synonym: "main bronchial submucosa" EXACT [FMA:13118] synonym: "main bronchus submucosa" EXACT [OBOL:automatic] @@ -258251,6 +265165,8 @@ relationship: part_of UBERON:0002182 ! main bronchus id: UBERON:0004950 name: submucosa of lobar bronchus def: "A submucosa that is part of a lobar bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lobar bronchial submucosa" EXACT [FMA:62669] synonym: "lobar bronchus submucosa" EXACT [OBOL:automatic] synonym: "secondary bronchus submucosa" EXACT [OBOL:automatic] @@ -258265,6 +265181,8 @@ relationship: part_of UBERON:0002183 ! lobar bronchus id: UBERON:0004951 name: submucosa of segmental bronchus def: "A submucosa that is part of a segmental bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "segmental bronchial submucosa" EXACT [FMA:62670] synonym: "segmental bronchus submucosa" EXACT [OBOL:automatic] synonym: "submucosa of tertiary bronchus" EXACT [OBOL:automatic] @@ -258279,6 +265197,8 @@ relationship: part_of UBERON:0002184 ! segmental bronchus id: UBERON:0004952 name: submucosa of bronchiole def: "A submucosa that is part of a bronchiole [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchiole submucosa" EXACT [OBOL:automatic] xref: FMA:62775 is_a: UBERON:0004119 ! endoderm-derived structure @@ -258291,6 +265211,8 @@ relationship: part_of UBERON:0002186 ! bronchiole id: UBERON:0004980 name: mucosa of ureter def: "A mucosa that is part of a ureter [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of ureter" EXACT [OBOL:automatic] synonym: "mucosal layer of ureter" EXACT [FMA:15894] synonym: "mucous membrane of ureter" EXACT [OBOL:automatic] @@ -258317,6 +265239,8 @@ relationship: part_of UBERON:0009916 {source="https://github.com/obophenotype/ub id: UBERON:0004982 name: mucosa of epiglottis def: "A mucosa that is part of a epiglottis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epiglottis mucosa" EXACT [OBOL:automatic] synonym: "epiglottis mucosa of organ" EXACT [OBOL:automatic] synonym: "epiglottis mucous membrane" EXACT [OBOL:automatic] @@ -258335,6 +265259,8 @@ relationship: part_of UBERON:0000388 ! epiglottis id: UBERON:0004983 name: mucosa of vagina def: "A mucosa that is part of a vagina [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of vagina" EXACT [OBOL:automatic] synonym: "mucous membrane of vagina" EXACT [OBOL:automatic] synonym: "organ mucosa of vagina" EXACT [OBOL:automatic] @@ -258357,6 +265283,8 @@ relationship: part_of UBERON:0000996 ! vagina id: UBERON:0004984 name: mucosa of seminal vesicle def: "A mucosa that is part of a seminal vesicle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of seminal gland" EXACT [OBOL:automatic] synonym: "mucosa of organ of seminal vesicle" EXACT [OBOL:automatic] synonym: "mucosa of seminal gland" EXACT [OBOL:automatic] @@ -258385,6 +265313,8 @@ relationship: part_of UBERON:0000998 ! seminal vesicle id: UBERON:0004985 name: mucosa of ejaculatory duct def: "A mucosa that is part of a ejaculatory duct [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ejaculatory duct mucosa" EXACT [OBOL:automatic] synonym: "ejaculatory duct mucosa of organ" EXACT [OBOL:automatic] synonym: "ejaculatory duct mucous membrane" EXACT [OBOL:automatic] @@ -258403,6 +265333,8 @@ relationship: part_of UBERON:0000999 ! ejaculatory duct id: UBERON:0004986 name: mucosa of deferent duct def: "A mucosa that is part of a vas deferens [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "deferent duct mucosa" EXACT [OBOL:automatic] synonym: "deferent duct mucosa of organ" EXACT [OBOL:automatic] synonym: "deferent duct mucous membrane" EXACT [OBOL:automatic] @@ -258456,6 +265388,8 @@ relationship: part_of UBERON:0001000 ! vas deferens id: UBERON:0004987 name: mucosa of laryngopharynx def: "A mucosa that is part of a hypopharynx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hypopharynx mucosa" EXACT [OBOL:automatic] synonym: "hypopharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "hypopharynx mucous membrane" EXACT [OBOL:automatic] @@ -258490,6 +265424,8 @@ relationship: part_of UBERON:0001051 ! hypopharynx id: UBERON:0004988 name: mucosa of cystic duct def: "A mucosa that is part of a cystic duct [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cystic duct mucosa" EXACT [OBOL:automatic] synonym: "cystic duct mucosa of organ" EXACT [OBOL:automatic] synonym: "cystic duct mucous membrane" EXACT [OBOL:automatic] @@ -258509,6 +265445,8 @@ id: UBERON:0004989 name: mucosa of appendix def: "A mucosa that is part of an appendix [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "appendiceal mucous membrane" EXACT [FMA:14991] synonym: "appendix mucosa" EXACT [OBOL:automatic] synonym: "appendix mucosa of organ" EXACT [OBOL:automatic] @@ -258554,6 +265492,9 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0004990 name: mucosa of ascending colon def: "A mucosa that is part of an ascending colon [Automatically generated definition]." [OBOL:automatic] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ascending colon mucosa" EXACT [OBOL:automatic] synonym: "ascending colon mucosa of organ" EXACT [OBOL:automatic] synonym: "ascending colon mucous membrane" EXACT [OBOL:automatic] @@ -258566,11 +265507,15 @@ is_a: UBERON:0000317 ! colonic mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001156 ! ascending colon relationship: part_of UBERON:0001156 ! ascending colon +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0004991 name: mucosa of transverse colon def: "A mucosa that is part of a transverse colon [Automatically generated definition]." [OBOL:automatic] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of transverse colon" EXACT [OBOL:automatic] synonym: "mucous membrane of transverse colon" EXACT [OBOL:automatic] synonym: "organ mucosa of transverse colon" EXACT [OBOL:automatic] @@ -258583,11 +265528,15 @@ is_a: UBERON:0000317 ! colonic mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001157 ! transverse colon relationship: part_of UBERON:0001157 ! transverse colon +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0004992 name: mucosa of descending colon def: "A mucosa that is part of a descending colon [Automatically generated definition]." [OBOL:automatic] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "descending colon mucosa" EXACT [OBOL:automatic] synonym: "descending colon mucosa of organ" EXACT [OBOL:automatic] synonym: "descending colon mucous membrane" EXACT [OBOL:automatic] @@ -258600,11 +265549,15 @@ is_a: UBERON:0000317 ! colonic mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001158 ! descending colon relationship: part_of UBERON:0001158 ! descending colon +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0004993 name: mucosa of sigmoid colon def: "A mucosa that is part of a sigmoid colon [Automatically generated definition]." [OBOL:automatic] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of sigmoid colon" EXACT [OBOL:automatic] synonym: "mucous membrane of sigmoid colon" EXACT [OBOL:automatic] synonym: "organ mucosa of sigmoid colon" EXACT [OBOL:automatic] @@ -258617,11 +265570,14 @@ is_a: UBERON:0000317 ! colonic mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001159 ! sigmoid colon relationship: part_of UBERON:0001159 ! sigmoid colon +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0004994 name: mucosa of fundus of stomach def: "A mucosa that is part of a fundus of stomach [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fundus gastricus (ventricularis) mucosa" EXACT [OBOL:automatic] synonym: "fundus gastricus (ventricularis) mucosa of organ" EXACT [OBOL:automatic] synonym: "fundus gastricus (ventricularis) mucous membrane" EXACT [OBOL:automatic] @@ -258656,6 +265612,8 @@ relationship: part_of UBERON:0001160 ! fundus of stomach id: UBERON:0004995 name: mucosa of body of stomach def: "A mucosa that is part of a body of stomach [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "body of stomach mucosa" EXACT [OBOL:automatic] synonym: "body of stomach mucosa of organ" EXACT [OBOL:automatic] synonym: "body of stomach mucous membrane" EXACT [OBOL:automatic] @@ -258697,6 +265655,8 @@ relationship: part_of UBERON:0001161 ! body of stomach id: UBERON:0004996 name: mucosa of cardia of stomach def: "A mucosa that is part of a cardia of stomach [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cardia of stomach mucosa" EXACT [OBOL:automatic] synonym: "cardia of stomach mucosa of organ" EXACT [OBOL:automatic] synonym: "cardia of stomach mucous membrane" EXACT [OBOL:automatic] @@ -258746,6 +265706,8 @@ relationship: part_of UBERON:0001162 ! cardia of stomach id: UBERON:0004997 name: mucosa of pyloric antrum def: "A mucosa that is part of a pyloric antrum [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "antral mucosa" EXACT [BTO:0004107] synonym: "antrum of stomach mucosa" EXACT [OBOL:automatic] synonym: "antrum of stomach mucosa of organ" EXACT [OBOL:automatic] @@ -258783,6 +265745,8 @@ relationship: part_of UBERON:0004998 {source="BTO"} ! mucosa of pylorus id: UBERON:0004998 name: mucosa of pylorus def: "A mucosa that is part of a pylorus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "antropyloric mucosa" RELATED [BTO:0002984] synonym: "mucosa of organ of pyloric part of stomach" EXACT [OBOL:automatic] synonym: "mucosa of organ of pylorus" EXACT [OBOL:automatic] @@ -258819,6 +265783,8 @@ relationship: part_of UBERON:0001166 ! pylorus id: UBERON:0004999 name: mucosa of biliary tree def: "A mucosa that is part of a biliary tree [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "biliary tract mucosa" EXACT [OBOL:automatic] synonym: "biliary tract mucosa of organ" EXACT [OBOL:automatic] synonym: "biliary tract mucous membrane" EXACT [OBOL:automatic] @@ -258845,6 +265811,8 @@ relationship: part_of UBERON:0001173 ! biliary tree id: UBERON:0005000 name: mucosa of common bile duct def: "A mucosa that is part of a common bile duct [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "common bile duct mucosa" EXACT [OBOL:automatic] synonym: "common bile duct mucosa of organ" EXACT [OBOL:automatic] synonym: "common bile duct mucous membrane" EXACT [OBOL:automatic] @@ -258871,6 +265839,8 @@ relationship: part_of UBERON:0001174 ! common bile duct id: UBERON:0005001 name: mucosa of common hepatic duct def: "A mucosa that is part of a common hepatic duct [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "common hepatic duct mucosa" EXACT [OBOL:automatic] synonym: "common hepatic duct mucosa of organ" EXACT [OBOL:automatic] synonym: "common hepatic duct mucous membrane" EXACT [OBOL:automatic] @@ -258897,6 +265867,8 @@ relationship: part_of UBERON:0001175 ! common hepatic duct id: UBERON:0005002 name: mucosa of right hepatic duct def: "A mucosa that is part of a right hepatic duct [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of right hepatic duct" EXACT [OBOL:automatic] synonym: "mucous membrane of right hepatic duct" EXACT [OBOL:automatic] synonym: "organ mucosa of right hepatic duct" EXACT [OBOL:automatic] @@ -258915,6 +265887,8 @@ relationship: part_of UBERON:0001176 ! right hepatic duct id: UBERON:0005003 name: mucosa of left hepatic duct def: "A mucosa that is part of a left hepatic duct [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left hepatic duct mucosa" EXACT [OBOL:automatic] synonym: "left hepatic duct mucosa of organ" EXACT [OBOL:automatic] synonym: "left hepatic duct mucous membrane" EXACT [OBOL:automatic] @@ -258933,6 +265907,8 @@ relationship: part_of UBERON:0001177 ! left hepatic duct id: UBERON:0005004 name: mucosa of right ureter def: "A mucosa that is part of a right ureter [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of right ureter" EXACT [OBOL:automatic] synonym: "mucous membrane of right ureter" EXACT [OBOL:automatic] synonym: "organ mucosa of right ureter" EXACT [OBOL:automatic] @@ -258952,6 +265928,8 @@ id: UBERON:0005005 name: mucosa of left ureter def: "A mucosa that is part of a left ureter [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "left ureter mucosa" EXACT [OBOL:automatic] synonym: "left ureter mucosa of organ" EXACT [OBOL:automatic] synonym: "left ureter mucous membrane" EXACT [OBOL:automatic] @@ -258971,6 +265949,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0005006 name: mucosa of renal pelvis def: "A mucosa that is part of a renal pelvis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "kidney pelvis mucosa" EXACT [OBOL:automatic] synonym: "kidney pelvis mucosa of organ" EXACT [OBOL:automatic] synonym: "kidney pelvis mucous membrane" EXACT [OBOL:automatic] @@ -259007,6 +265987,8 @@ relationship: part_of UBERON:0001224 ! renal pelvis id: UBERON:0005007 name: mucosa of major calyx def: "A mucosa that is part of a major calyx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "major calix mucosa" EXACT [OBOL:automatic] synonym: "major calix mucosa of organ" EXACT [OBOL:automatic] synonym: "major calix mucous membrane" EXACT [OBOL:automatic] @@ -259032,6 +266014,8 @@ relationship: part_of UBERON:0001226 ! major calyx id: UBERON:0005008 name: mucosa of minor calyx def: "A mucosa that is part of a minor calyx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "minor calix mucosa" EXACT [OBOL:automatic] synonym: "minor calix mucosa of organ" EXACT [OBOL:automatic] synonym: "minor calix mucous membrane" EXACT [OBOL:automatic] @@ -259058,6 +266042,8 @@ id: UBERON:0005009 name: mucosa of trigone of urinary bladder def: "A mucosa that is part of a trigone of urinary bladder [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "deep trigone mucosa" EXACT [OBOL:automatic] synonym: "deep trigone mucosa of organ" EXACT [OBOL:automatic] synonym: "deep trigone mucous membrane" EXACT [OBOL:automatic] @@ -259116,6 +266102,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0005010 name: mucosa of neck of urinary bladder def: "A mucosa that is part of a neck of urinary bladder [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bladder neck mucosa" EXACT [OBOL:automatic] synonym: "bladder neck mucosa of organ" EXACT [OBOL:automatic] synonym: "bladder neck mucous membrane" EXACT [OBOL:automatic] @@ -259164,6 +266152,8 @@ relationship: part_of UBERON:0001258 ! neck of urinary bladder id: UBERON:0005011 name: mucosa of right fallopian tube def: "A mucosa that is part of a right uterine tube [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of right fallopian tube" EXACT [OBOL:automatic] synonym: "mucosa of organ of right oviduct" EXACT [OBOL:automatic] synonym: "mucosa of organ of right uterine tube" EXACT [OBOL:automatic] @@ -259197,6 +266187,8 @@ relationship: part_of UBERON:0001302 ! right fallopian tube id: UBERON:0005012 name: mucosa of left fallopian tube def: "A mucosa that is part of a left uterine tube [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left fallopian tube mucosa" EXACT [OBOL:automatic] synonym: "left fallopian tube mucosa of organ" EXACT [OBOL:automatic] synonym: "left fallopian tube mucous membrane" EXACT [OBOL:automatic] @@ -259230,6 +266222,8 @@ relationship: part_of UBERON:0001303 ! left fallopian tube id: UBERON:0005013 name: mucosa of male urethra def: "A mucosa that is part of a male urethra [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "male urethra mucosa" EXACT [OBOL:automatic] synonym: "male urethra mucosa of organ" EXACT [OBOL:automatic] synonym: "male urethra mucous membrane" EXACT [OBOL:automatic] @@ -259247,6 +266241,8 @@ relationship: part_of UBERON:0001333 ! male urethra id: UBERON:0005014 name: mucosa of female urethra def: "A mucosa that is part of a female urethra [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "female urethra mucosa" EXACT [OBOL:automatic] synonym: "female urethra mucosa of organ" EXACT [OBOL:automatic] synonym: "female urethra mucous membrane" EXACT [OBOL:automatic] @@ -259264,6 +266260,8 @@ relationship: part_of UBERON:0001334 ! female urethra id: UBERON:0005015 name: mucosa of prostatic urethra def: "A mucosa that is part of a prostatic urethra [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of prostatic part of urethra" EXACT [OBOL:automatic] synonym: "mucosa of organ of prostatic urethra" EXACT [OBOL:automatic] synonym: "mucosa of prostatic part of urethra" EXACT [OBOL:automatic] @@ -259291,6 +266289,8 @@ relationship: part_of UBERON:0001335 ! prostatic urethra id: UBERON:0005016 name: mucosa of intermediate urethra def: "A mucosa that is part of a membranous urethra [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "intermediate part of urethra mucosa" EXACT [OBOL:automatic] synonym: "intermediate part of urethra mucosa of organ" EXACT [OBOL:automatic] synonym: "intermediate part of urethra mucous membrane" EXACT [OBOL:automatic] @@ -259343,6 +266343,8 @@ relationship: part_of UBERON:0001336 ! membranous urethra of male or female id: UBERON:0005017 name: mucosa of lacrimal sac def: "A mucosa that is part of a lacrimal sac [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lacrimal sac mucosa" EXACT [OBOL:automatic] synonym: "lacrimal sac mucosa of organ" EXACT [OBOL:automatic] synonym: "lacrimal sac mucous membrane" EXACT [OBOL:automatic] @@ -259360,6 +266362,8 @@ relationship: part_of UBERON:0001351 ! lacrimal sac id: UBERON:0005018 name: mucosa of nasal septum def: "A mucosa that is part of a nasal septum [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of nasal septum" EXACT [OBOL:automatic] synonym: "mucous membrane of nasal septum" EXACT [OBOL:automatic] synonym: "nasal septum mucosa" EXACT [OBOL:automatic] @@ -259379,6 +266383,8 @@ relationship: part_of UBERON:0001706 ! nasal septum id: UBERON:0005019 name: mucosa of palate def: "A mucosa that is part of a palate [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of oral roof" EXACT [OBOL:automatic] synonym: "mucosa of organ of oral roof" EXACT [OBOL:automatic] synonym: "mucosa of organ of palate" EXACT [OBOL:automatic] @@ -259414,6 +266420,8 @@ id: UBERON:0005020 name: mucosa of tongue def: "A mucosa that is part of a tongue [Automatically generated definition]." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "lingual mucosa" EXACT [FMA:54807] synonym: "mucosa of organ of tongue" EXACT [OBOL:automatic] synonym: "mucous membrane of tongue" EXACT [OBOL:automatic] @@ -259435,6 +266443,8 @@ relationship: part_of UBERON:0001723 ! tongue id: UBERON:0005021 name: mucosa of sphenoidal sinus def: "A mucosa that is part of a sphenoidal sinus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of sphenoid sinus" EXACT [OBOL:automatic] synonym: "mucosa of organ of sphenoidal sinus" EXACT [OBOL:automatic] synonym: "mucosa of sphenoid sinus" EXACT [OBOL:automatic] @@ -259463,6 +266473,8 @@ property_value: editor_note "decide whether cavities can be part of mucosae" xsd id: UBERON:0005022 name: mucosa of nasopharynx def: "A mucosa that is part of a nasopharynx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of nasopharynx" EXACT [OBOL:automatic] @@ -259499,6 +266511,8 @@ relationship: part_of UBERON:0001728 ! nasopharynx id: UBERON:0005023 name: mucosa of oropharynx def: "A mucosa that is part of a oropharynx [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of oral part of pharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of oral part of pharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of oropharynx" EXACT [OBOL:automatic] @@ -259527,6 +266541,8 @@ relationship: part_of UBERON:0001729 ! oropharynx id: UBERON:0005024 name: mucosa of soft palate def: "A mucosa that is part of a soft palate [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of soft palate" EXACT [OBOL:automatic] synonym: "mucous membrane of soft palate" EXACT [OBOL:automatic] synonym: "organ mucosa of soft palate" EXACT [OBOL:automatic] @@ -259546,6 +266562,7 @@ relationship: part_of UBERON:0001733 ! soft palate id: UBERON:0005025 name: mucosa of uvula def: "A mucosa that is part of a uvula [Automatically generated definition]." [OBOL:automatic] +subset: human_subset synonym: "uvula mucosa" EXACT [FMA:60030] xref: FMA:60030 is_a: UBERON:0005024 ! mucosa of soft palate @@ -259557,6 +266574,8 @@ relationship: part_of UBERON:0001734 ! palatine uvula id: UBERON:0005026 name: mucosa of middle ear def: "A mucosa that is part of a middle ear [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "middle ear mucosa" EXACT [OBOL:automatic] synonym: "middle ear mucosa of organ" EXACT [OBOL:automatic] synonym: "middle ear mucous membrane" EXACT [OBOL:automatic] @@ -259577,6 +266596,8 @@ relationship: part_of UBERON:0001756 ! middle ear id: UBERON:0005027 name: mucosa of frontal sinus def: "A mucosa that is part of a frontal sinus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "frontal sinus mucosa" EXACT [OBOL:automatic] synonym: "frontal sinus mucosa of organ" EXACT [OBOL:automatic] synonym: "frontal sinus mucous membrane" EXACT [OBOL:automatic] @@ -259595,6 +266616,8 @@ relationship: located_in UBERON:0001760 ! frontal sinus id: UBERON:0005028 name: mucosa of maxillary sinus def: "A mucosa that is part of a maxillary sinus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "antrum of highmore mucosa" EXACT [OBOL:automatic] synonym: "antrum of highmore mucosa of organ" EXACT [OBOL:automatic] synonym: "antrum of highmore mucous membrane" EXACT [OBOL:automatic] @@ -259621,6 +266644,8 @@ relationship: located_in UBERON:0001764 ! maxillary sinus id: UBERON:0005029 name: mucosa of lacrimal canaliculus def: "A mucosa that is part of a lacrimal canaliculus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lacrimal canalicular mucosa" EXACT [FMA:85366] synonym: "lacrimal canaliculus mucosa" EXACT [OBOL:automatic] synonym: "lacrimal canaliculus mucosa of organ" EXACT [OBOL:automatic] @@ -259640,6 +266665,8 @@ relationship: part_of UBERON:0001770 ! lacrimal canaliculus id: UBERON:0005030 name: mucosa of paranasal sinus def: "A mucosa that adjacent_to a paranasal sinus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "paranasal sinus mucosa" EXACT [OBOL:automatic] xref: FMA:59772 is_a: UBERON:0000344 ! mucosa @@ -259651,6 +266678,8 @@ relationship: adjacent_to UBERON:0001825 ! paranasal sinus id: UBERON:0005031 name: mucosa of upper lip def: "A mucosa that is part of a upper lip [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of upper lip" EXACT [OBOL:automatic] synonym: "mucous membrane of upper lip" EXACT [OBOL:automatic] synonym: "organ mucosa of upper lip" EXACT [OBOL:automatic] @@ -259672,6 +266701,8 @@ relationship: part_of UBERON:0001834 ! upper lip id: UBERON:0005032 name: mucosa of lower lip def: "A mucosa that is part of a lower lip [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lower labial mucosa" EXACT [UBERON:cjm] synonym: "lower lip mucosa" EXACT [OBOL:automatic] synonym: "lower lip mucosa of organ" EXACT [OBOL:automatic] @@ -259693,6 +266724,8 @@ relationship: part_of UBERON:0001835 ! lower lip id: UBERON:0005033 name: mucosa of gallbladder def: "A mucosa that is part of a gallbladder [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "gall bladder mucosa" EXACT [OBOL:automatic] synonym: "gall bladder mucosa of organ" EXACT [OBOL:automatic] synonym: "gall bladder mucous membrane" EXACT [OBOL:automatic] @@ -259722,6 +266755,8 @@ relationship: part_of UBERON:0002110 ! gallbladder id: UBERON:0005034 name: mucosa of right main bronchus def: "A mucosa that is part of a right main bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of right bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of right main bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of right principal bronchus" EXACT [OBOL:automatic] @@ -259756,6 +266791,8 @@ relationship: part_of UBERON:0002177 ! right main bronchus id: UBERON:0005035 name: mucosa of left main bronchus def: "A mucosa that is part of a left main bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left bronchus mucosa" EXACT [OBOL:automatic] synonym: "left bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "left bronchus mucous membrane" EXACT [OBOL:automatic] @@ -259790,6 +266827,8 @@ relationship: part_of UBERON:0002178 ! left main bronchus id: UBERON:0005036 name: mucosa of main bronchus def: "A mucosa that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchus principalis mucosa" EXACT [OBOL:automatic] synonym: "bronchus principalis mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchus principalis mucous membrane" EXACT [OBOL:automatic] @@ -259832,6 +266871,8 @@ relationship: part_of UBERON:0002182 ! main bronchus id: UBERON:0005037 name: mucosa of lobar bronchus def: "A mucosa that is part of a lobar bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lobar bronchial mucosa" EXACT [FMA:62668] synonym: "lobar bronchus mucosa" EXACT [OBOL:automatic] synonym: "lobar bronchus mucosa of organ" EXACT [OBOL:automatic] @@ -259858,6 +266899,8 @@ relationship: part_of UBERON:0002183 ! lobar bronchus id: UBERON:0005038 name: mucosa of segmental bronchus def: "A mucosa that is part of a segmental bronchus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of segmental bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of tertiary bronchus" EXACT [OBOL:automatic] synonym: "mucosa of tertiary bronchus" EXACT [OBOL:automatic] @@ -259884,6 +266927,8 @@ relationship: part_of UBERON:0002184 ! segmental bronchus id: UBERON:0005039 name: mucosa of bronchiole def: "A mucosa that is part of a bronchiole [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchiole mucosa" EXACT [OBOL:automatic] synonym: "bronchiole mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchiole mucous membrane" EXACT [OBOL:automatic] @@ -259903,6 +266948,8 @@ relationship: part_of UBERON:0002186 ! bronchiole id: UBERON:0005040 name: mucosa of terminal bronchiole def: "A mucosa that is part of a terminal bronchiole [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchiolus terminalis mucosa" EXACT [OBOL:automatic] synonym: "bronchiolus terminalis mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchiolus terminalis mucous membrane" EXACT [OBOL:automatic] @@ -259928,6 +266975,8 @@ relationship: part_of UBERON:0002187 ! terminal bronchiole id: UBERON:0005041 name: mucosa of respiratory bronchiole def: "A mucosa that is part of a respiratory bronchiole [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchiolus respiratorius mucosa" EXACT [OBOL:automatic] synonym: "bronchiolus respiratorius mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchiolus respiratorius mucous membrane" EXACT [OBOL:automatic] @@ -259953,6 +267002,8 @@ relationship: part_of UBERON:0002188 ! respiratory bronchiole id: UBERON:0005042 name: inner epithelial layer of tympanic membrane def: "A portion of the tympanic cavity epithelium which makes up the outer (cuticular) layer of the tympanic membrane." [https://orcid.org/0000-0002-6601-2165, PMID:11237469] +subset: human_subset +subset: mouse_subset synonym: "mucosa of tympanic membrane" EXACT [FMA:56844] synonym: "mucous layer of tympanic membrane" EXACT [FMA:56844] synonym: "mucous stratum of tympanic membrane" EXACT [FMA:56844] @@ -259971,6 +267022,8 @@ property_value: external_ontology_notes "in FMA this is classified as a mucosa" id: UBERON:0005043 name: mucosa of nasolacrimal duct def: "A mucosa that is part of a nasolacrimal duct [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of organ of nasolacrimal duct" EXACT [OBOL:automatic] synonym: "mucous membrane of nasolacrimal duct" EXACT [OBOL:automatic] synonym: "nasolacrimal duct mucosa" EXACT [OBOL:automatic] @@ -259990,6 +267043,8 @@ relationship: part_of UBERON:0002392 ! nasolacrimal duct id: UBERON:0005044 name: mucosa of pharyngotympanic tube def: "A mucosa that is part of a pharyngotympanic tube [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "auditory tube mucosa" EXACT [OBOL:automatic] synonym: "auditory tube mucosa of organ" EXACT [OBOL:automatic] synonym: "auditory tube mucous membrane" EXACT [OBOL:automatic] @@ -260027,6 +267082,8 @@ relationship: part_of UBERON:0002393 ! pharyngotympanic tube id: UBERON:0005045 name: mucosa of ethmoidal sinus def: "A mucosa that is part of a ethmoid sinus [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ethmoid sinus mucosa" EXACT [OBOL:automatic] synonym: "ethmoid sinus mucosa of organ" EXACT [OBOL:automatic] synonym: "ethmoid sinus mucous membrane" EXACT [OBOL:automatic] @@ -260047,6 +267104,8 @@ relationship: located_in UBERON:0002453 ! ethmoid sinus id: UBERON:0005046 name: mucosa of hard palate def: "A mucosa that is part of a hard palate [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hard palate mucosa" EXACT [OBOL:accepted] synonym: "hard palate mucous membrane" EXACT [OBOL:automatic] synonym: "mucous membrane of hard palate" EXACT [OBOL:automatic] @@ -260062,6 +267121,8 @@ relationship: part_of UBERON:0003216 ! hard palate id: UBERON:0005047 name: mucosa of vocal fold def: "A mucosa that is part of a vocal cord [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of glottis" EXACT [FMA:64017] synonym: "mucosa of organ of true vocal cord" EXACT [OBOL:automatic] synonym: "mucosa of organ of vocal cord" EXACT [OBOL:automatic] @@ -260090,6 +267151,8 @@ relationship: part_of UBERON:0003706 ! laryngeal vocal fold id: UBERON:0005048 name: mucosa of fallopian tube def: "A mucosa that is part of a fallopian tube [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fallopian tube mucosa" EXACT [OBOL:automatic] synonym: "fallopian tube mucosa of organ" EXACT [OBOL:automatic] synonym: "fallopian tube mucous membrane" EXACT [OBOL:automatic] @@ -260119,6 +267182,8 @@ relationship: part_of UBERON:0003889 ! fallopian tube id: UBERON:0005049 name: mucosa of infundibulum of uterine tube def: "A mucosa that is part of a uterine tube infundibulum [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of infundibulum of fallopian tube" EXACT [FMA:18357] synonym: "mucosa of infundibulum of oviduct" EXACT [FMA:18357] synonym: "mucosa of organ of uterine tube infundibulum" EXACT [OBOL:automatic] @@ -260138,6 +267203,8 @@ relationship: part_of UBERON:0003984 ! uterine tube infundibulum [Term] id: UBERON:0005050 name: liver papillary process +subset: human_subset +subset: mouse_subset synonym: "papillary process of caudate lobe of liver" NARROW [FMA:14506] synonym: "processus papillaris" EXACT [FMA:14506] synonym: "processus papillaris lobi caudati hepatis" EXACT OMO:0003011 [FMA:14506, FMA:TA] @@ -260153,6 +267220,8 @@ relationship: part_of UBERON:0002107 ! liver id: UBERON:0005051 name: mediastinum testis def: "The mediastinum testis is a network of fibrous connective tissue that extends from the upper to near the lower extremity of the testis, and is wider above than below. From its front and sides numerous imperfect septa (trabeculæ) are given off, which radiate toward the surface of the organ, and are attached to the tunica albuginea. They divide the interior of the organ into a number of incomplete spaces, called lobules. These are somewhat cone-shaped, being broad at their bases at the surface of the gland, and becoming narrower as they converge to the mediastinum. The mediastinum supports the rete testis and blood vessels of the testis in their passage to and from the substance of the gland[WP]." [Wikipedia:Mediastinum_testis] +subset: human_subset +subset: mouse_subset synonym: "body of highmore" EXACT [FMA:19812] synonym: "hilum of testicle" EXACT [] synonym: "mediastinum of testis" EXACT [FMA:19812] @@ -260194,6 +267263,8 @@ property_value: taxon_notes "currently restricted to Aves, but may be found outs id: UBERON:0005053 name: primary nerve cord def: "A cluster of neurons that is the most prominent longitudinally extending condensed part of a nervous system." [PMID:21062451] +subset: human_subset +subset: mouse_subset synonym: "nerve cord" EXACT [BILA:0000136] synonym: "true nerve cord" EXACT [http://orcid.org/0000-0002-6601-2165] xref: BILA:0000136 @@ -260210,6 +267281,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/691" xsd: id: UBERON:0005054 name: primary dorsal nerve cord def: "A nerve cord in the dorsal mid-line that is the most prominent nerve cord." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Dorsal_nerve_cord] +subset: human_subset +subset: mouse_subset synonym: "dorsal nerve cord" EXACT [BTO:0002329, http://tolweb.org/Chordata/2499, Wikipedia:Dorsal_nerve_cord] synonym: "true dorsal nerve cord" EXACT [http://orcid.org/0000-0002-6601-2165] xref: BTO:0002329 @@ -260226,6 +267299,8 @@ relationship: part_of UBERON:0001137 ! dorsum id: UBERON:0005055 name: zone of long bone def: "An organ part that is part of a long bone [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "long bone zone" EXACT [] xref: FMA:24008 @@ -260239,6 +267314,8 @@ id: UBERON:0005056 name: external female genitalia def: "An external genitalia that is part of a female reproductive system [Automatically generated definition]." [OBOL:automatic] comment: TODO: Relabel. Make distinct organ class. See https://github.com/obophenotype/uberon/issues/547 +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "external female genital organ" EXACT [BTO:0003100] @@ -260264,6 +267341,8 @@ property_value: taxon_notes "in eutherians, this is known as the vulva in and co id: UBERON:0005057 name: immune organ def: "An organ that is part of a immune system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "immune system organ" EXACT [] @@ -260276,6 +267355,8 @@ relationship: part_of UBERON:0002405 ! immune system id: UBERON:0005058 name: hemolymphoid system gland def: "A gland that is part of a hemolymphoid system [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "haemolymphoid system gland" RELATED [EMAPA:18766] synonym: "hemopoietic or lymphoid gland" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -260297,6 +267378,8 @@ consider: FBbt:00001668 id: UBERON:0005061 name: neural groove def: "The median dorsal longitudinal groove formed in the embryo by the neural plate after the appearance of the neural folds." [GO:0001842, http://orcid.org/0000-0002-6601-2165, Wikipedia:Neural_groove] +subset: human_subset +subset: mouse_subset xref: AAO:0011071 xref: EMAPA:35594 xref: FMA:295624 @@ -260314,6 +267397,8 @@ property_value: external_definition "The neural groove is a shallow median groov id: UBERON:0005062 name: neural fold def: "One of the two elevated edges of the neural groove[GO,MP]." [GO:0001842, MP:0011256, Wikipedia:Neural_fold] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "medullary fold" EXACT [MP:0011256] xref: EHDAA2:0001249 @@ -260338,6 +267423,8 @@ property_value: external_definition "In front of the primitive streak two longit id: UBERON:0005063 name: left ventricular compact myocardium def: "Missing definition for term UBERON:0005063. Please replace it using linked reference." [GO:0003224] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004127 ! compact layer of ventricle intersection_of: UBERON:0004127 ! compact layer of ventricle intersection_of: part_of UBERON:0002084 ! heart left ventricle @@ -260349,6 +267436,8 @@ relationship: part_of UBERON:0006566 {is_inferred="true", source="https://github id: UBERON:0005064 name: left ventricular trabecular myocardium def: "Missing definition for term UBERON:0005064. Please replace it using linked reference." [GO:0003225] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004126 ! trabecular layer of ventricle intersection_of: UBERON:0004126 ! trabecular layer of ventricle intersection_of: part_of UBERON:0002084 ! heart left ventricle @@ -260359,6 +267448,8 @@ relationship: part_of UBERON:0003382 {source="GO"} ! cardiac muscle of left vent id: UBERON:0005065 name: right ventricular compact myocardium def: "Missing definition for term UBERON:0005065. Please replace it using linked reference." [GO:0003226] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004127 ! compact layer of ventricle intersection_of: UBERON:0004127 ! compact layer of ventricle intersection_of: part_of UBERON:0002080 ! heart right ventricle @@ -260370,6 +267461,8 @@ relationship: part_of UBERON:0006567 {is_inferred="true", source="https://github id: UBERON:0005066 name: right ventricular trabecular myocardium def: "Missing definition for term UBERON:0005066. Please replace it using linked reference." [GO:0003227] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004126 ! trabecular layer of ventricle intersection_of: UBERON:0004126 ! trabecular layer of ventricle intersection_of: part_of UBERON:0002080 ! heart right ventricle @@ -260391,6 +267484,8 @@ id: UBERON:0005068 name: neural rod def: "A solid rod of neurectoderm derived from the neural keel. The neural rod is roughly circular in cross section. Neural rod formation occurs during primary neurulation in teleosts[GO]. An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube[ZFIN]." [GO:0014024, ZFA:0000133] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "neural tube rod" RELATED [GO:0014027] xref: EFO:0003498 xref: TAO:0000133 @@ -260404,6 +267499,8 @@ property_value: external_definition "An intermediate stage in the development of id: UBERON:0005069 name: neural fold hinge point def: "The median hinge point extends for the entire length of the neural tube, and the lateral hinge points do not form in the spinal cord region of the neural tube[GO]." [GO:0021504] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001049 ! neural tube @@ -260411,6 +267508,8 @@ relationship: part_of UBERON:0001049 ! neural tube id: UBERON:0005070 name: anterior neuropore def: "The neuropore at the anterior (rostral) end of the neural tube." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cephalic neuropore" EXACT [] synonym: "cranial neuropore" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -260431,6 +267530,8 @@ property_value: external_definition "Anterior site of neural tube closure. [Evol id: UBERON:0005071 name: posterior neuropore def: "The neuropore at the posterior (caudal) end of the neural tube." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "caudal neuropore" EXACT [EMAPA:16526] xref: EHDAA2:0000676 @@ -260461,6 +267562,8 @@ replaced_by: UBERON:0011929 id: UBERON:0005075 name: forebrain-midbrain boundary def: "An anatomical boundary that adjacent_to a forebrain and adjacent_to a midbrain." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "diencephalic-mesencephalic boundary" EXACT [ZFA:0001367] synonym: "forebrain midbrain boundary" EXACT [ZFA:0001367] synonym: "forebrain-midbrain boundary region" EXACT [EMAPA:36449] @@ -260483,6 +267586,8 @@ property_value: external_definition "The boundary between the diencephalon and t id: UBERON:0005076 name: hindbrain-spinal cord boundary def: "An anatomical boundary that adjacent_to a hindbrain and adjacent_to a spinal cord." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hindbrain-spinal cord boundary region" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction @@ -260497,6 +267602,8 @@ relationship: part_of UBERON:0001017 ! central nervous system id: UBERON:0005077 name: neuropore def: "A temporary opening leading from the central canal of the embryonic neural tube to the exterior." [MGI:anna] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: SCTID:360408007 is_a: UBERON:0000161 ! orifice @@ -260510,6 +267617,8 @@ relationship: part_of UBERON:0001049 ! neural tube id: UBERON:0005078 name: lamina terminalis of neural tube def: "The anterior-most (rostral) portion of the wall of the neural tube, formed by closure of the anterior neuropore; the median strip of the anterior wall of the prosencephalon, which persists in a relatively unchanged state as the cerebral hemispheres grow out forward beyond the original anterior end of the prosencephalon." [MGI:anna] +subset: human_subset +subset: mouse_subset synonym: "lamina terminalis" BROAD [] xref: BAMS:LTer xref: BM:LT @@ -260544,6 +267653,8 @@ relationship: part_of UBERON:0007379 ! shelled egg id: UBERON:0005080 name: metanephric ureteric bud def: "The portion of the ureteric bud tube that contributes to the morphogenesis of the metanephros[GO]." [GO:0035502] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000084 ! ureteric bud intersection_of: UBERON:0000084 ! ureteric bud intersection_of: has_potential_to_develop_into UBERON:0000081 ! metanephros @@ -260553,6 +267664,8 @@ relationship: has_potential_to_develop_into UBERON:0000081 ! metanephros id: UBERON:0005081 name: ureter ureteric bud def: "The portion of the ureteric bud that contributes to the morphogenesis of the ureter. The ureter ureteric bud is the initial structure that forms the ureter[GO]." [GO:0035503] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000084 ! ureteric bud intersection_of: UBERON:0000084 ! ureteric bud intersection_of: has_potential_to_develop_into UBERON:0000056 ! ureter @@ -260562,6 +267675,8 @@ relationship: has_potential_to_develop_into UBERON:0000056 ! ureter id: UBERON:0005082 name: tube lumen def: "A hole in a tube[GO]." [GO:0060609] +subset: human_subset +subset: mouse_subset xref: AEO:0000078 xref: EHDAA2:0004618 xref: RETIRED_EHDAA2:0003078 @@ -260574,6 +267689,8 @@ relationship: surrounded_by UBERON:0000025 ! tube id: UBERON:0005083 name: nipple sheath def: "A circular ingrowth of the epidermis around the region of the mammary sprout[GO]." [GO:0060659, MGI:anna] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001003 ! skin epidermis is_a: UBERON:0003244 ! epithelium of mammary gland relationship: part_of UBERON:0002030 ! nipple @@ -260582,6 +267699,8 @@ relationship: part_of UBERON:0002030 ! nipple id: UBERON:0005085 name: ectodermal placode def: "An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO]." [GO:0060788] +subset: human_subset +subset: mouse_subset synonym: "epithelial placode" RELATED [AEO:0000112] xref: AEO:0000218 is_a: UBERON:0001048 ! primordium @@ -260595,6 +267714,8 @@ property_value: taxon_notes "With the exception of the adenohypophysis, homologu id: UBERON:0005086 name: hair follicle placode def: "A bud-like thickening in the epidermis consisting of elongated keratinocytes, which at the distal end are in touch with numerous aggregated specialized dermal fibroblasts, the dermal condensate." [DOI:10.1016/j.cub.2008.12.005] +subset: human_subset +subset: mouse_subset synonym: "hair gem" RELATED [ISBN:9780878932504] synonym: "hair germ" RELATED [DOI:10.1016/j.cub.2008.12.005] synonym: "hair peg" RELATED [ISBN:9780878932504] @@ -260613,6 +267734,8 @@ property_value: external_definition "An hair follicle placode is a thickening of id: UBERON:0005087 name: tooth placode def: "An tooth placode is a thickening of the ectoderm that will give rise to the tooth bud[GO]." [GO:0060790] +subset: human_subset +subset: mouse_subset synonym: "dental anlage" EXACT [] synonym: "dental placode" EXACT [OBOL:automatic] synonym: "dental primordium" EXACT [ZFA:0001153] @@ -260637,6 +267760,8 @@ property_value: location_notes "In mammals this may be located in the alveolar r id: UBERON:0005088 name: sebaceous gland placode def: "A sebaceous gland placode is a thickening of the ectoderm that will give rise to the sebaceous gland bud[GO]." [GO:0060791] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0011814 {source="NCBIBook:NBK53175"} ! non-neurogenic ectodermal placode intersection_of: UBERON:0005085 ! ectodermal placode @@ -260649,6 +267774,8 @@ property_value: editor_note "TODO - add bud" xsd:string id: UBERON:0005089 name: sweat gland placode def: "An sweat gland placode is a thickening of the ectoderm that will give rise to the sweat gland bud[GO]." [GO:0060793] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0011814 {source="NCBIBook:NBK53175"} ! non-neurogenic ectodermal placode intersection_of: UBERON:0005085 ! ectodermal placode @@ -260661,6 +267788,8 @@ property_value: editor_note "TODO - add bud" xsd:string id: UBERON:0005090 name: muscle structure def: "Muscle structures are contractile cells, tissues or organs that are found in multicellular organisms[GO]." [GO:0061061] +subset: human_subset +subset: mouse_subset synonym: "muscle" RELATED [] synonym: "muscle element" RELATED [] synonym: "musculus" EXACT [FMA:30316] @@ -260673,6 +267802,8 @@ property_value: curator_notes "in some organisms such as drosophila, muscles can [Term] id: UBERON:0005091 name: left horn of sinus venosus +subset: human_subset +subset: mouse_subset synonym: "sinus venosus left horn" EXACT [VHOG:0000488] xref: EHDAA2:0001840 xref: EHDAA:482 @@ -260687,6 +267818,8 @@ property_value: homology_notes "Three major adaptations, or 'novel cardiac compo [Term] id: UBERON:0005092 name: right horn of sinus venosus +subset: human_subset +subset: mouse_subset synonym: "sinus venosus right horn" EXACT [VHOG:0000489] xref: EHDAA2:0001841 xref: EHDAA:484 @@ -260702,6 +267835,8 @@ property_value: homology_notes "Three major adaptations, or 'novel cardiac compo id: UBERON:0005093 name: embryonic cement gland def: "A simple mucus-secreting structure that is positioned at the front of the embryo, attaches the newly hatched embryo to a support before the hatchling can swim well or feed, and marks the anterior-most dorsal ectoderm[XAO]." [GO:0071570, XAO:0000033] +subset: human_subset +subset: mouse_subset synonym: "cement gland" BROAD [XAO:0000033] xref: AAO:0010373 xref: XAO:0000033 @@ -260729,6 +267864,8 @@ property_value: terminology_notes "The term beak is also used to refer to a simi id: UBERON:0005095 name: kidney rudiment def: "Missing definition for term UBERON:0005095. Please replace it using linked reference." [GO:0072003] +subset: human_subset +subset: mouse_subset synonym: "kidney anlage" RELATED [GOC:mtg_kidney_jan10] is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0007687 {source="GO"} ! kidney field @@ -260741,6 +267878,8 @@ name: descending thin limb alt_id: UBERON:0005165 def: "The descending thin limb is a part of the loop of Henle situated just after the proximal straight tubule (S3). It extends to the tip of the loop of Henle[GO]." [GO:0072022, Wikipedia:Descending_limb_of_loop_of_Henle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "descending limb of Henle's loop" RELATED [Wikipedia:Descending_limb_of_loop_of_Henle] synonym: "descending limb of loop of Henle" RELATED [Wikipedia:Descending_limb_of_loop_of_Henle] @@ -260769,6 +267908,8 @@ id: UBERON:0005097 name: renal connecting tubule def: "The connecting tubule is a tubular segment of the nephron; it connects the distal convoluted tubule to the collecting duct[GO]." [GO:0072027, Wikipedia:Connecting_tubule] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "connecting tubule" EXACT [MA:0002610] synonym: "kidney connecting tubule" EXACT [MA:0002610] synonym: "tubulus renalis arcuatus" RELATED OMO:0003011 [Wikipedia:Connecting_tubule] @@ -260789,6 +267930,8 @@ id: UBERON:0005099 name: short descending thin limb def: "The short descending thin limb is the descending thin limb of a short nephron that has a squamous epithelial morphology[GO]." [GO:0072063] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0004211 ! nephron epithelium is_a: UBERON:0006914 ! squamous epithelium relationship: has_part CL:0000076 ! squamous epithelial cell @@ -260800,6 +267943,8 @@ property_value: editor_note "TODO - epithelium types" xsd:string id: UBERON:0005100 name: long descending thin limb def: "The long descending limb starts in the inner stripe of the outer medulla and extends into the inner medulla[GO]." [GO:0072064] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004211 ! nephron epithelium relationship: part_of UBERON:0001285 ! nephron @@ -260807,6 +267952,8 @@ relationship: part_of UBERON:0001285 ! nephron id: UBERON:0005101 name: early distal convoluted tubule def: "The early distal convoluted tubule contains DCT cells and is vasopressin-insensitive[GO]." [GO:0072067] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004211 ! nephron epithelium is_a: UBERON:0012275 ! meso-epithelium relationship: part_of UBERON:0001292 ! distal convoluted tubule @@ -260815,6 +267962,8 @@ relationship: part_of UBERON:0001292 ! distal convoluted tubule id: UBERON:0005102 name: late distal convoluted tubule def: "The late distal convoluted tubule contains DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive[GO]." [GO:0072068] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004211 ! nephron epithelium is_a: UBERON:0012275 ! meso-epithelium relationship: part_of UBERON:0001292 ! distal convoluted tubule @@ -260824,6 +267973,8 @@ property_value: editor_note "TODO - CL" xsd:string id: UBERON:0005103 name: mesonephric epithelium def: "An epithelium that is part of a mesonephros [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium @@ -260834,6 +267985,8 @@ relationship: part_of UBERON:0000080 ! mesonephros id: UBERON:0005104 name: anterior mesonephric tubule def: "Missing definition for term UBERON:0005104. Please replace it using linked reference." [GO:0072165] +subset: human_subset +subset: mouse_subset synonym: "cranial mesonephric tubule" EXACT [EMAPA:30562] xref: EMAPA:30562 is_a: UBERON:0000083 ! mesonephric tubule @@ -260843,6 +267996,8 @@ disjoint_from: UBERON:0005105 {source="lexical"} ! posterior mesonephric tubule id: UBERON:0005105 name: posterior mesonephric tubule def: "Missing definition for term UBERON:0005105. Please replace it using linked reference." [GO:0072166] +subset: human_subset +subset: mouse_subset synonym: "caudal mesonephric tubule" EXACT [EMAPA:30574] xref: EMAPA:30571 is_a: UBERON:0000083 ! mesonephric tubule @@ -260851,6 +268006,8 @@ is_a: UBERON:0000083 ! mesonephric tubule id: UBERON:0005106 name: metanephric tubule def: "A metanephric tubule is an epithelial tube that is part of the metanephros[GO]." [GO:0072173] +subset: human_subset +subset: mouse_subset xref: VHOG:0001526 is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005108 ! metanephric epithelium @@ -260864,6 +268021,8 @@ property_value: homology_notes "The ureteric diverticulum grows dorsally into th id: UBERON:0005107 name: metanephric cap def: "The metanephric cap is formed by the condensation of metanephric mesenchymal cells surrounding the ureteric bud tip[GO]. Mesenchyme closely apposed to the tips of the buds is called cap mesenchyme; it will later go on to form nephrons etc[GUDMAP]." [GO:0072185, http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] +subset: human_subset +subset: mouse_subset synonym: "cap mesenchyme" EXACT [EMAPA:27621] synonym: "condensed mesenchyme" RELATED [EMAPA:27621] xref: EMAPA:27621 @@ -260878,6 +268037,8 @@ property_value: editor_note "TODO - check EMAPA" xsd:string id: UBERON:0005108 name: metanephric epithelium def: "An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure[GO]." [GO:0072207] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium @@ -260888,6 +268049,8 @@ relationship: part_of UBERON:0000081 ! metanephros id: UBERON:0005109 name: metanephric smooth muscle tissue def: "Any smooth muscle tissue that is part of a metanephros." [GO:0072208, https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0000081 ! metanephros @@ -260898,6 +268061,8 @@ id: UBERON:0005110 name: metanephric nephron alt_id: UBERON:0005142 def: "A metanephric nephron is the functional unit of the metanephros[GO]." [GO:0072273] +subset: human_subset +subset: mouse_subset xref: VHOG:0000719 is_a: UBERON:0001285 ! nephron is_a: UBERON:0004120 ! mesoderm-derived structure @@ -260913,6 +268078,8 @@ property_value: homology_notes "The primitive form of the vertebrate nephron con id: UBERON:0005111 name: metanephric pyramid def: "Metanephric pyramids are the conical masses that constitute the renal medulla in a metanephros; they contain the loops of Henle and the medullary collecting ducts[GO]." [GO:0072211] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004200 ! kidney pyramid intersection_of: UBERON:0004200 ! kidney pyramid @@ -260922,6 +268089,8 @@ relationship: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005113 name: metanephric cortex mesenchyme +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001140 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure @@ -260931,6 +268100,8 @@ relationship: develops_from UBERON:0010531 {source="EHDAA2"} ! metanephros induc id: UBERON:0005114 name: metanephric ascending thin limb def: "The metanephric ascending thin limb is a segment of a nephron tubule in the metanephros lying in the inner medulla that is permeable to ions but not to water and has a simple epithelium; active transepithelial solute transport is absent[GO]." [GO:0072218] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004193 ! loop of Henle ascending limb thin segment is_a: UBERON:0005146 ! metanephric nephron tubule intersection_of: UBERON:0004193 ! loop of Henle ascending limb thin segment @@ -260942,6 +268113,8 @@ relationship: part_of UBERON:0005129 {source="https://github.com/obophenotype/ub id: UBERON:0005115 name: metanephric cortical collecting duct def: "The metanephric cortical collecting duct is the portion of the metanephric collecting duct that resides in the renal cortex[GO]." [GO:0072219] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004203 ! cortical collecting duct intersection_of: UBERON:0004203 ! cortical collecting duct @@ -260954,6 +268127,8 @@ relationship: part_of UBERON:0010533 {is_inferred="true", source="https://github id: UBERON:0005116 name: metanephric descending thin limb def: "It extends to the tip of the metanephric loop of Henle[GO]." [GO:0072220] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005096 ! descending thin limb intersection_of: UBERON:0005096 ! descending thin limb @@ -260965,6 +268140,8 @@ relationship: part_of UBERON:0005130 {is_inferred="true", source="https://github id: UBERON:0005117 name: metanephric distal convoluted tubule def: "The metanephric distal convoluted tubule is a portion of the metanephric nephron tubule that connects the metanephric loop of Henle to the collecting duct[GO]." [GO:0072221] +subset: human_subset +subset: mouse_subset xref: VHOG:0001569 is_a: UBERON:0001292 ! distal convoluted tubule is_a: UBERON:0005146 ! metanephric nephron tubule @@ -260978,6 +268155,8 @@ relationship: part_of UBERON:0010533 {is_inferred="true", source="https://github id: UBERON:0005118 name: metanephric early distal convoluted tubule def: "The metanephric early distal convoluted tubule contains metanephric DCT cells and is vasopressin-insensitive[GO]." [GO:0072222] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005101 ! early distal convoluted tubule is_a: UBERON:0005134 ! metanephric nephron epithelium intersection_of: UBERON:0005101 ! early distal convoluted tubule @@ -260990,6 +268169,8 @@ relationship: part_of UBERON:0005129 {source="https://github.com/obophenotype/ub id: UBERON:0005119 name: metanephric glomerular mesangium def: "The metanephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the metanephros, which helps to support the capillary loops in a renal glomerulus[GO]." [GO:0072223] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002320 ! glomerular mesangium intersection_of: UBERON:0002320 ! glomerular mesangium intersection_of: part_of UBERON:0000081 ! metanephros @@ -261000,6 +268181,8 @@ relationship: part_of UBERON:0005133 {is_inferred="true", source="https://github id: UBERON:0005120 name: metanephric late distal convoluted tubule def: "The metanephric late distal convoluted tubule contains metanephric DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive[GO]." [GO:0072225] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005102 ! late distal convoluted tubule is_a: UBERON:0005134 ! metanephric nephron epithelium intersection_of: UBERON:0005102 ! late distal convoluted tubule @@ -261012,6 +268195,8 @@ relationship: part_of UBERON:0005129 {source="https://github.com/obophenotype/ub id: UBERON:0005121 name: metanephric long descending thin limb bend def: "The metanephric long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment in the metanephros[GO]." [GO:0072226] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004206 ! long descending thin limb bend intersection_of: UBERON:0004206 ! long descending thin limb bend @@ -261022,6 +268207,8 @@ relationship: part_of UBERON:0000081 ! metanephros id: UBERON:0005122 name: metanephric macula densa def: "The metanephric macula densa is an area of specialized cells in the distal tubule of the metanephros that makes contact with the vascular pole of the glomerulus[GO]." [GO:0072227] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002335 ! macula densa is_a: UBERON:0005134 ! metanephric nephron epithelium intersection_of: UBERON:0002335 ! macula densa @@ -261033,6 +268220,8 @@ relationship: part_of UBERON:0004738 {is_inferred="true", source="https://github id: UBERON:0005123 name: metanephric prebend segment def: "The metanephric prebend segment is a part of the metanephric descending thin limb that lies before the bend and exhibits permeabilities characteristic of the ascending limb, especially negligible water permeability[GO]." [GO:0072228] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004207 ! prebend segment of loop of Henle intersection_of: UBERON:0004207 ! prebend segment of loop of Henle @@ -261044,6 +268233,8 @@ relationship: part_of UBERON:0005116 {is_inferred="true", source="https://github id: UBERON:0005124 name: metanephric proximal convoluted tubule def: "The metanephric proximal convoluted tubule is the most proximal portion of the metanephric proximal tubule and extends from the metanephric glomerular capsule to the metanephric proximal straight tubule[GO]." [GO:0072229] +subset: human_subset +subset: mouse_subset xref: VHOG:0001570 is_a: UBERON:0001287 ! proximal convoluted tubule is_a: UBERON:0005146 ! metanephric nephron tubule @@ -261057,6 +268248,8 @@ relationship: part_of UBERON:0010533 {is_inferred="true", source="https://github id: UBERON:0005125 name: metanephric proximal straight tubule def: "The metanephric proximal straight tubule is the part of the metanephric descending limb that extends from the metanephric proximal convoluted tubule to the metanephric descending thin tubule[GO]." [GO:0072230] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001290 ! proximal straight tubule is_a: UBERON:0005146 ! metanephric nephron tubule intersection_of: UBERON:0001290 ! proximal straight tubule @@ -261071,6 +268264,8 @@ property_value: editor_note "TODO - place mammalian xrefs here rather than at pa id: UBERON:0005126 name: metanephric S1 def: "The S1 portion is the initial portion of the metanephric proximal convoluted tubule and is responsible for avid reabsorption of water and solutes[GO]." [GO:0072231] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004196 ! proximal convoluted tubule segment 1 intersection_of: UBERON:0004196 ! proximal convoluted tubule segment 1 intersection_of: part_of UBERON:0000081 ! metanephros @@ -261081,6 +268276,8 @@ relationship: part_of UBERON:0005124 {is_inferred="true", source="https://github id: UBERON:0005127 name: metanephric thick ascending limb def: "At the macula densa, the thick ascending limb connects to the distal convoluted tubule[GO]." [GO:0072233] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001291 ! thick ascending limb of loop of Henle is_a: UBERON:0005146 ! metanephric nephron tubule intersection_of: UBERON:0001291 ! thick ascending limb of loop of Henle @@ -261093,6 +268290,8 @@ id: UBERON:0005129 name: metanephric distal tubule alt_id: UBERON:0005150 def: "The metanephric distal tubule is a metanephric nephron tubule that begins at the metanephric macula densa and extends to the metanephric connecting tubule[GO]." [GO:0072235] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004135 ! distal tubule is_a: UBERON:0005146 ! metanephric nephron tubule intersection_of: UBERON:0004135 ! distal tubule @@ -261104,6 +268303,8 @@ relationship: part_of UBERON:0005110 {source="https://github.com/obophenotype/ub id: UBERON:0005130 name: metanephric loop of Henle def: "The metanephric loop of Henle is a metanephric nephron tubule that connects the proximal convoluted tubule to the distal convoluted tubule in the metanephros[GO]." [GO:0072236] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001288 ! loop of Henle is_a: UBERON:0005146 ! metanephric nephron tubule intersection_of: UBERON:0001288 ! loop of Henle @@ -261116,6 +268317,8 @@ relationship: part_of UBERON:0005110 {source="https://github.com/obophenotype/ub id: UBERON:0005132 name: metanephric long nephron def: "Long nephrons are associated with juxtamedullary glomeruli and extend into the inner medulla in the metanephros[GO]." [GO:0072238] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004194 ! long nephron is_a: UBERON:0005110 ! metanephric nephron intersection_of: UBERON:0004194 ! long nephron @@ -261127,6 +268330,8 @@ id: UBERON:0005133 name: metanephric glomerulus vasculature alt_id: UBERON:0005143 def: "The metanephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the metanephric glomerulus[GO]." [GO:0072239] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004190 ! renal glomerulus vasculature intersection_of: UBERON:0004190 ! renal glomerulus vasculature intersection_of: part_of UBERON:0000081 ! metanephros @@ -261137,6 +268342,8 @@ relationship: part_of UBERON:0004736 {is_inferred="true", source="https://github id: UBERON:0005134 name: metanephric nephron epithelium def: "The metanephric nephron epithelium is a tissue that covers the surface of a nephron in the metanephros[GO]." [GO:0072243] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004211 ! nephron epithelium is_a: UBERON:0005108 ! metanephric epithelium intersection_of: UBERON:0004211 ! nephron epithelium @@ -261148,6 +268355,8 @@ relationship: part_of UBERON:0005110 {is_inferred="true", source="https://github id: UBERON:0005135 name: metanephric glomerular epithelium def: "A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros[GO]." [GO:0072244] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004188 ! glomerular epithelium is_a: UBERON:0005134 ! metanephric nephron epithelium intersection_of: UBERON:0004188 ! glomerular epithelium @@ -261160,6 +268369,8 @@ relationship: part_of UBERON:0005110 {source="https://github.com/obophenotype/ub id: UBERON:0005136 name: metanephric glomerular endothelium def: "The metanephric glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus of the metanephros[GO]." [GO:0072264] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004189 ! glomerular endothelium is_a: UBERON:0005135 ! metanephric glomerular epithelium intersection_of: UBERON:0004189 ! glomerular endothelium @@ -261174,6 +268385,8 @@ id: UBERON:0005137 name: metanephric capsule alt_id: UBERON:0005112 def: "The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage[GO]." [GO:0072213] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002015 ! kidney capsule is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002015 ! kidney capsule @@ -261183,6 +268396,8 @@ relationship: part_of UBERON:0000081 ! metanephros [Term] id: UBERON:0005139 name: metanephric long descending thin limb +subset: human_subset +subset: mouse_subset is_a: UBERON:0005100 ! long descending thin limb is_a: UBERON:0005134 ! metanephric nephron epithelium intersection_of: UBERON:0005100 ! long descending thin limb @@ -261194,6 +268409,8 @@ relationship: part_of UBERON:0005110 {is_inferred="true", source="https://github id: UBERON:0005140 name: metanephric short nephron def: "Short nephrons are associated with mid-cortical and superficial glomeruli, are situated entirely in the outer medulla, and have no thin ascending limb[GO]." [GO:0072270] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004195 ! short nephron is_a: UBERON:0005110 ! metanephric nephron intersection_of: UBERON:0004195 ! short nephron @@ -261204,6 +268421,8 @@ relationship: part_of UBERON:0000081 ! metanephros id: UBERON:0005141 name: metanephric short descending thin limb def: "The metanephric short descending thin limb is the descending thin limb of a short nephron in the metanephros that has a squamous epithelial morphology[GO]." [GO:0072271] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005099 ! short descending thin limb is_a: UBERON:0005134 ! metanephric nephron epithelium intersection_of: UBERON:0005099 ! short descending thin limb @@ -261215,6 +268434,8 @@ relationship: part_of UBERON:0005110 {is_inferred="true", source="https://github id: UBERON:0005144 name: metanephric glomerular capillary def: "This process pertains to the initial formation of a structure from unspecified parts[GO]." [GO:0072277] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004212 ! glomerular capillary intersection_of: UBERON:0004212 ! glomerular capillary intersection_of: part_of UBERON:0000081 ! metanephros @@ -261226,6 +268447,8 @@ relationship: part_of UBERON:0005110 {source="https://github.com/obophenotype/ub id: UBERON:0005145 name: metanephric comma-shaped body def: "The metanephric comma-shaped body is the precursor structure to the metanephric S-shaped body that contributes to the morphogenesis of a nephron in the metanephros[GO]." [GO:0072278] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004198 ! comma-shaped body intersection_of: UBERON:0004198 ! comma-shaped body intersection_of: part_of UBERON:0000081 ! metanephros @@ -261237,6 +268460,8 @@ name: metanephric nephron tubule alt_id: UBERON:0005128 alt_id: UBERON:0005152 def: "A metanephric nephron tubule is an epithelial tube that is part of the metanephric nephron, the functional part of the metanephros[GO]." [GO:0072282] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001231 ! nephron tubule is_a: UBERON:0005106 ! metanephric tubule is_a: UBERON:0005134 ! metanephric nephron epithelium @@ -261250,6 +268475,8 @@ relationship: part_of UBERON:0005110 {is_inferred="true", source="https://github id: UBERON:0005147 name: metanephric renal vesicle def: "The renal vesicle is the primordial structure of the metanephric nephron epithelium, and is formed by the condensation of mesenchymal cells[GO]." [GO:0072283] +subset: human_subset +subset: mouse_subset synonym: "metanephric vesicle" EXACT [] xref: EHDAA2:0001245 xref: EHDAA:9346 @@ -261266,6 +268493,8 @@ relationship: part_of UBERON:0000081 ! metanephros id: UBERON:0005148 name: metanephric S-shaped body def: "The metanephric S-shaped body is the successor of the metanephric comma-shaped body that contributes to the morphogenesis of a nephron in the metanephros[GO]." [GO:0072284] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004199 ! S-shaped body intersection_of: UBERON:0004199 ! S-shaped body intersection_of: part_of UBERON:0000081 ! metanephros @@ -261276,6 +268505,8 @@ relationship: part_of UBERON:0005110 {is_inferred="true", source="https://github id: UBERON:0005149 name: metanephric connecting tubule def: "The metanephric connecting tubule is a tubular segment of the metanephric nephron; it connects the distal convoluted tubule to the collecting duct in the metanephros[GO]." [GO:0072286] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005097 ! renal connecting tubule is_a: UBERON:0005146 ! metanephric nephron tubule intersection_of: UBERON:0005097 ! renal connecting tubule @@ -261288,6 +268519,8 @@ id: UBERON:0005151 name: metanephric proximal tubule alt_id: UBERON:0005131 def: "The metanephric proximal tubule is a metanephric nephron tubule that connects Bowman's capsule to the descending thin limb of the loop of Henle in the metanephros. It has a brush border epithelial morphology[GO]." [GO:0072288] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004134 ! proximal tubule is_a: UBERON:0005146 ! metanephric nephron tubule intersection_of: UBERON:0004134 ! proximal tubule @@ -261300,6 +268533,8 @@ relationship: part_of UBERON:0010533 {is_inferred="true", source="https://github id: UBERON:0005153 name: epithelial bud def: "A bud is a protrusion that forms from an epithelial sheet by localized folding." [GO:0060572] +subset: human_subset +subset: mouse_subset xref: BTO:0001639 is_a: UBERON:0005157 ! epithelial fold @@ -261307,6 +268542,8 @@ is_a: UBERON:0005157 ! epithelial fold id: UBERON:0005154 name: epithelial cord def: "A cord of epithelial cells without a lumen and usually several cells thick." [AEO:0000216] +subset: human_subset +subset: mouse_subset xref: AEO:0000216 xref: EHDAA2:0004052 is_a: UBERON:0000486 {source="AEO"} ! multilaminar epithelium @@ -261332,6 +268569,8 @@ id: UBERON:0005156 name: reproductive structure def: "Any anatomical structure that is part of the reproductive system." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "reproductive system element" EXACT [] synonym: "reproductive system structure" EXACT [] is_a: UBERON:0010000 ! multicellular anatomical structure @@ -261343,12 +268582,16 @@ relationship: part_of UBERON:0000990 ! reproductive system id: UBERON:0005157 name: epithelial fold def: "An epithelial sheet bent on a linear axis." [GO:0060571] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0005158 name: parenchyma of central nervous system def: "The functional tissue of the central nervous system consisting of neurons and glial cells." [CL:tm, https://github.com/obophenotype/uberon/issues/8] +subset: human_subset +subset: mouse_subset synonym: "central nervous system parenchyma" EXACT [OBOL:automatic] synonym: "CNS parenchyma" EXACT [OBOL:automatic] synonym: "parenchyma of central nervous system" EXACT [] @@ -261365,6 +268608,8 @@ property_value: dc:contributor https://github.com/tmeehan id: UBERON:0005159 name: pyramid of medulla oblongata def: "The anterior or ventral portion of the medulla oblongata is named the pyramid and lies between the anterior median fissure and the antero-lateral sulcus. Its upper end is slightly constricted, and between it and the pons the fibers of the abducent nerve emerge; a little below the pons it becomes enlarged and prominent, and finally tapers into the anterior funiculus of the medulla spinalis, with which, at first sight, it appears to be directly continuous[WP]." [Wikipedia:Pyramid_(brainstem)] +subset: human_subset +subset: mouse_subset synonym: "lobule VIII of Larsell" EXACT [FMA:75254] synonym: "medullary pyramid" BROAD [FMA:75254] synonym: "pyramid of medulla" BROAD [FMA:75254] @@ -261387,6 +268632,8 @@ relationship: part_of UBERON:0001896 ! medulla oblongata id: UBERON:0005160 name: vestigial structure def: "A remnant structure from earlier development or evolution." [PATOC:MAH] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Vestigiality is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure @@ -261409,6 +268656,8 @@ property_value: curator_notes "this class refers to the external portion and its id: UBERON:0005162 name: multi cell part structure def: "A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part." [CARO:0001000] +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "cell part cluster" RELATED [FMA:83115] synonym: "multi-cell-component structure" EXACT [CARO:0001000] @@ -261425,6 +268674,8 @@ property_value: external_ontology_notes "we go with the FMA classification rathe id: UBERON:0005164 name: ascending limb of loop of Henle def: "The distal part of the loop of Henle that is impermeable to water and actively pumps sodium out of the filtrate to generate the hypertonic interstitium that drives countercurrent exchange; it consists of an initial very thin segment lined by simple squamous epithelium followed by a distal thick segment lined by simple cuboidal epithelium[MP]." [MP:0011342, Wikipedia:Ascending_limb_of_loop_of_Henle] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "ascending limb" BROAD [] @@ -261447,6 +268698,8 @@ property_value: editor_note "TODO - thick/thin check. Also relationship to dista id: UBERON:0005167 name: papillary duct def: "The terminal portions of the medullary collecting ducts are the papillary ducts, which end at the renal papilla and empty into a minor calyx." [http://encyclopedia.thefreedictionary.com/] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "Bellini's duct" RELATED [MP:0011331] synonym: "duct of Bellini" RELATED [] @@ -261465,6 +268718,8 @@ id: UBERON:0005168 name: renal interlobular vein def: "Any of the veins that parallel the interlobular arteries, receiving blood from the peritubular capillary plexus and empty into the arcuate veins." [ISBN:0-683-40008-8, MP:0011326] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "interlobular vein" EXACT [MA:0002594] synonym: "interlobular veins of kidney" RELATED [FMA:71634] @@ -261489,6 +268744,8 @@ id: UBERON:0005169 name: interstitial tissue def: "Connective tissue between the cellular elements of a structure." [http://medical-dictionary.thefreedictionary.com/tissue] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "interstitium" EXACT [] xref: FMA:86301 @@ -261504,6 +268761,8 @@ name: granulosa cell layer def: "A layer of the ovarian follicle that consists of granulosa cells." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "granulosa cell layer" RELATED [TAO:0001112] synonym: "granulosa cell layer of ovarian follicle" EXACT [FMA:18660] @@ -261535,6 +268794,8 @@ property_value: structure_notes "At one part of the mature follicle the cells of id: UBERON:0005171 name: hepatic duct def: "Any portion of the ducts that carry bile from the liver to the common bile duct. This may include both intrahapetic components (parts of left and right hepatic ducts) and extrahapetic components (common hepatic duct, plus hilar portion)." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core xref: EHDAA2:0000741 @@ -261560,6 +268821,8 @@ property_value: external_definition "The hepatic duct is the duct that leads fro id: UBERON:0005172 name: abdomen element def: "An organ or element that is in the abdomen. Examples: spleen, intestine, kidney, abdominal mammary gland." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "abdomen organ" EXACT [MA:0000522] xref: MA:0000522 @@ -261573,6 +268836,8 @@ relationship: part_of UBERON:0000916 ! abdomen id: UBERON:0005173 name: abdominal segment element def: "An organ or element that is part of the adbominal segment of the organism. This region can be further subdivided into the abdominal cavity and the pelvic region." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "abdominal segment organ" EXACT [MA:0000529] xref: EMAPA:37062 {source="MA:th"} @@ -261586,6 +268851,8 @@ relationship: part_of UBERON:0002417 ! abdominal segment of trunk id: UBERON:0005174 name: dorsal region element def: "An organ or element that part of the dorsum of the organism. Examples: spinal cord, vertebrae, muscles of back." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "back organ" EXACT [MA:0001901] synonym: "dorsal region organ" EXACT [] @@ -261600,6 +268867,8 @@ relationship: part_of UBERON:0001137 ! dorsum id: UBERON:0005175 name: chest organ def: "An organ that is part of a chest [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: non_informative subset: organ_slim xref: EMAPA:37272 {source="MA:th"} @@ -261614,6 +268883,8 @@ id: UBERON:0005176 name: tooth enamel organ def: "A circumscribed mass of ectodermal cells which bud off from the dental lamina; it becomes cup-shaped and develops on its internal face the ameloblast layer of cells that produces the enamel cap of a developing tooth." [https://github.com/cerivs/zebrafish-anatomical-ontology/issues/107, https://github.com/obophenotype/uberon/issues/1313, ISBN:0-683-40008-8, MP:0010747, Wikipedia:Enamel_organ] comment: . Alternate definition: A cellular aggregation seen in histologic sections of a developing tooth. It lies above a condensation of ectomesenchymal cells called the odontogenic papilla. +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "dental organ" EXACT [ZFA:0005138] @@ -261643,6 +268914,8 @@ property_value: terminology_notes "Historically, enamel organ has been the term id: UBERON:0005177 name: trunk region element def: "An organ or element that part of the trunk region. The trunk region can be further subdividied into thoracic (including chest and thoracic cavity) and abdominal (including abdomen and pelbis) regions." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: non_informative subset: organ_slim synonym: "trunk organ" EXACT [MA:0000516] @@ -261657,6 +268930,8 @@ relationship: part_of UBERON:0002100 ! trunk id: UBERON:0005178 name: thoracic cavity element def: "An organ or element that is in the thoracic cavity. Examples: lung, heart, longus colli." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: non_informative subset: pheno_slim synonym: "thoracic cavity organ" EXACT [MA:0000557] @@ -261673,6 +268948,8 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk id: UBERON:0005179 name: pelvic region element def: "An organ or element that is part of the pelvic region. Examples: reproductive organs (in some organisms), urinary bladder, bones of the pelvis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: non_informative subset: organ_slim subset: pheno_slim @@ -261696,6 +268973,8 @@ consider: MA:0000747 id: UBERON:0005181 name: thoracic segment organ def: "An organ that part of the thoracic segment region. This region can be further subdividied chest and thoracic cavity regions." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "upper body organ" RELATED [MA:0000563] xref: EMAPA:37271 {source="MA:th"} @@ -261710,6 +268989,8 @@ id: UBERON:0005184 name: hair medulla def: "Innermost layer of the hair shaft." [Wikipedia:Bone_marrow_of_ovary_(hair)] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "medulla of hair shaft" RELATED [BTO:0004671] xref: BTO:0004671 @@ -261728,6 +269009,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0005185 name: renal medulla collecting duct def: "The portion of the collecting duct that resides in the renal medulla." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "kidney medulla collecting duct" EXACT [MA:0002935] synonym: "medullary collecting duct" EXACT [EMAPA:28061] xref: BTO:0004536 @@ -261770,6 +269053,8 @@ id: UBERON:0005192 name: deferent duct artery def: "An artery in males that provides blood to the vas deferens. The artery usually arises from the anterior trunk of the superior vesical artery. It accompanies the vas deferens into the testis, where it anastomoses with the testicular artery. In this way it also supplies blood to the testis and epididymis. A small branch supplies the ureter[WP]." [Wikipedia:Artery_to_the_ductus_deferens] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria ductus deferentis" EXACT OMO:0003011 [Wikipedia:Artery_to_the_ductus_deferens] synonym: "artery of ductus deferens" EXACT [FMA:18930] synonym: "ductus deferens artery" EXACT [FMA:18930] @@ -261794,6 +269079,8 @@ id: UBERON:0005193 name: ethmoidal artery def: "One of: anterior or posterior ethmoidal arteries." [Wikipedia:Ethmoidal_arteries] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "ethmoid artery" EXACT [] xref: EMAPA:37081 {source="MA:th"} xref: MA:0001949 @@ -261813,6 +269100,8 @@ relationship: part_of UBERON:0000033 ! head id: UBERON:0005194 name: thoracic vein def: "A vein that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37197 {source="MA:th"} xref: MA:0002235 xref: NCIT:C53142 @@ -261828,6 +269117,8 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk id: UBERON:0005195 name: deferent duct vein def: "A vein that is part of a vas deferens [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37514 {source="MA:th"} xref: MA:0002100 is_a: UBERON:0001638 ! vein @@ -261841,6 +269132,8 @@ id: UBERON:0005196 name: spleen germinal center def: "A germinal center that is part of the spleen. The spleen germinal center is located in a secondary B follicle in the white pulp of the spleen." [CL:tm, https://github.com/obophenotype/uberon/issues/6] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "germinal center of spleen" EXACT [] synonym: "spleen follicle center" EXACT [MP:0008474] @@ -261864,6 +269157,8 @@ property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0005197 name: segmental spinal nerve +subset: human_subset +subset: mouse_subset synonym: "cervical segmental spinal nerves C1-7" EXACT [EHDAA2:0001822] xref: EHDAA:3778 xref: EMAPA:16990 @@ -261885,6 +269180,8 @@ is_obsolete: true id: UBERON:0005199 name: cervical mammary gland def: "A mammary gland that is part of a cervical region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: MA:0000789 is_a: UBERON:0001911 ! mammary gland intersection_of: UBERON:0001911 ! mammary gland @@ -261896,6 +269193,8 @@ property_value: taxon_notes "mice have a single pair of cervical mammary glands" id: UBERON:0005200 name: thoracic mammary gland def: "A lactiferous gland that is located in the thoracic region/breast." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Mammary_gland#Other_mammals] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior mammary gland" RELATED [Wikipedia:Mammary_gland#Other_mammals] synonym: "breast mammary gland" EXACT [] @@ -261929,6 +269228,8 @@ consider: MA:0001937 id: UBERON:0005202 name: distal straight tubule macula densa def: "A macula densa that is part of an ascending limb of loop of Henle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: MA:0002604 is_a: UBERON:0002335 ! macula densa intersection_of: UBERON:0002335 ! macula densa @@ -261942,6 +269243,8 @@ id: UBERON:0005203 name: trachea gland def: "A tubuloacinar seromucous gland that is located principally in the submucosa of the trachea. Excretory ducts from this gland pass through the lamina propria to the tracheal lumen." [http://medical-dictionary.thefreedictionary.com/tracheal+glands, https://github.com/obophenotype/uberon/issues/1197, ISBN:1451113412, MGI:Anna, PMID:15973734] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "glandula trachealis" EXACT [FMA:7473] @@ -261964,6 +269267,8 @@ property_value: function_notes "These glands secrete mucus, lysozyme, defensins, id: UBERON:0005204 name: larynx submucosa gland def: "A gland that is part of a larynx submucosa [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "laryngeal submucosa gland" RELATED [EMAPA:35475] xref: EMAPA:35475 @@ -261977,6 +269282,8 @@ relationship: part_of UBERON:0004778 ! larynx submucosa [Term] id: UBERON:0005205 name: lamina propria of vagina +subset: human_subset +subset: mouse_subset synonym: "vagina stroma" RELATED [MA:0002737] xref: EMAPA:35902 xref: FMA:19979 @@ -261992,6 +269299,8 @@ relationship: part_of UBERON:0000996 ! vagina id: UBERON:0005206 name: choroid plexus stroma def: "Stromal matrix surrounding blood vessels within the choroid plexus." [PMCID:PMC3496674] +subset: human_subset +subset: mouse_subset synonym: "choroid plexus stromal matrix" EXACT [PMCID:PMC3496674] xref: EMAPA:36609 xref: MA:0000825 @@ -262008,6 +269317,8 @@ id: UBERON:0005207 name: tonsil capsule def: "A capsule that is part of a tonsil [Automatically generated definition]." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:294647 xref: MA:0000776 is_a: UBERON:0003893 ! capsule @@ -262020,6 +269331,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0005208 name: right atrium valve def: "A valve that is part of a right atrium [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "right atrium valves" RELATED OMO:0003004 [EHDAA2:0000302] synonym: "superior vena cava valve" RELATED [EMAPA:17327] synonym: "valve of right atrium" EXACT [EMAPA:17327] @@ -262036,6 +269349,8 @@ relationship: part_of UBERON:0002078 ! right cardiac atrium id: UBERON:0005211 name: renal medulla interstitium def: "Tissue surrounding the loop of Henle in the renal medulla." [Wikipedia:Bone_marrow_of_ovaryry_interstitium] +subset: human_subset +subset: mouse_subset synonym: "kidney medulla interstitium" EXACT [MA:0002619] synonym: "medullary interstitium" NARROW [Wikipedia:Medullary_interstitium] synonym: "medullary stroma" RELATED [EMAPA:18326] @@ -262057,6 +269372,8 @@ property_value: function_notes "It functions in renal water reabsorption by buil id: UBERON:0005212 name: Leydig cell region of testis def: "The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.." [MESH:A05.360.444.849] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "interstitium of testis" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "interstitium of the testis" EXACT [EMAPA:18687] @@ -262080,6 +269397,8 @@ relationship: part_of UBERON:0000473 ! testis id: UBERON:0005213 name: outer renal medulla interstitium def: "A portion of interstitial tissue that is part of a outer medulla of kidney [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "kidney outer medulla interstitium" EXACT [MA:0002621] synonym: "outer medullary interstitium" EXACT [EMAPA:28337] xref: EMAPA:28337 @@ -262094,6 +269413,8 @@ relationship: part_of UBERON:0005211 {source="MA"} ! renal medulla interstitium id: UBERON:0005214 name: inner renal medulla interstitium def: "A portion of interstitial tissue that is part of a inner medulla of kidney [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "inner medullary interstitium" EXACT [EMAPA:28364] synonym: "kidney inner medulla interstitium" EXACT [MA:0002620] synonym: "papillary interstitium" RELATED [EMAPA:28364] @@ -262110,6 +269431,8 @@ id: UBERON:0005215 name: kidney interstitium def: "The interstitial compartment of the kidney, comprising the extravascular intertubular spaces of the renal parenchyma, with their attendant cellular elements and extracellular substances, bounded on all sides by epithelial and vascular basement membranes." [DOI:10.1038/ki.1991.49, http://orcid.org/0000-0002-6601-2165, PMID:18575881] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "interstitial tissue of kidney" EXACT [] synonym: "kidney interstitium group" RELATED [EMAPA:28518] @@ -262146,6 +269469,8 @@ replaced_by: UBERON:0005234 id: UBERON:0005217 name: midbrain subarachnoid space def: "A subarachnoid space that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "subarachnoid space mesencephalon" RELATED [VHOG:0001304] synonym: "subarachnoid space midbrain" EXACT [VHOG:0001304] xref: EMAPA:19055 @@ -262160,6 +269485,8 @@ property_value: external_definition "Subarachnoid space that is part of the midb id: UBERON:0005218 name: diencephalon subarachnoid space def: "A subarachnoid space that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "subarachnoid space diencephalon" EXACT [VHOG:0001302] xref: EMAPA:19053 xref: VHOG:0001302 @@ -262173,6 +269500,8 @@ property_value: external_definition "Subarachnoid space that is part of the dien id: UBERON:0005219 name: hindbrain subarachnoid space def: "A subarachnoid space that is part of a hindbrain [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "subarachnoid space hindbrain" EXACT [VHOG:0001303] synonym: "subarachnoid space rhombencephalon" RELATED [VHOG:0001303] xref: EMAPA:18211 @@ -262187,6 +269516,8 @@ property_value: external_definition "Subarachnoid space that is part of the hind id: UBERON:0005220 name: pancreas head parenchyma def: "A parenchyma that is part of a head of pancreas [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:17508 xref: VHOG:0000838 is_a: UBERON:0001978 ! parenchyma of pancreas @@ -262199,6 +269530,8 @@ relationship: part_of UBERON:0001069 ! head of pancreas id: UBERON:0005221 name: liver right lobe parenchyma def: "A parenchyma that is part of a right lobe of liver [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "parenchyma of right lobe of liver" EXACT [FMA:71657] xref: EHDAA2:0001010 xref: EMAPA:18317 @@ -262213,6 +269546,8 @@ relationship: part_of UBERON:0001114 ! right lobe of liver id: UBERON:0005222 name: liver left lobe parenchyma def: "A parenchyma that is part of a left lobe of liver [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "parenchyma of left lobe of liver" EXACT [FMA:71658] xref: EHDAA2:0001002 xref: EMAPA:18310 @@ -262227,6 +269562,8 @@ relationship: part_of UBERON:0001115 ! left lobe of liver id: UBERON:0005223 name: pancreas body parenchyma def: "A parenchyma that is part of a body of pancreas [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001370 xref: EMAPA:17506 xref: VHOG:0000837 @@ -262239,6 +269576,8 @@ relationship: part_of UBERON:0001150 ! body of pancreas id: UBERON:0005224 name: pancreas tail parenchyma def: "A parenchyma that is part of a tail of pancreas [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001392 xref: EMAPA:17513 xref: VHOG:0000469 @@ -262252,6 +269591,8 @@ relationship: part_of UBERON:0001151 ! tail of pancreas id: UBERON:0005225 name: upper leg epithelium def: "An epithelium that is part of a hindlimb stylopod [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0002131 xref: EMAPA:17500 xref: VHOG:0001041 @@ -262265,6 +269606,8 @@ relationship: part_of UBERON:0000376 ! hindlimb stylopod id: UBERON:0005226 name: pedal digit epithelium def: "An epithelium that is part of a toe [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit epithelium" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit epithelium" EXACT [OBOL:accepted] synonym: "toe epithelium" EXACT [] @@ -262281,6 +269624,8 @@ relationship: part_of UBERON:0001466 ! pedal digit id: UBERON:0005227 name: manual digit epithelium def: "An epithelium that is part of a finger [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "finger epithelium" EXACT [] synonym: "fore limb digit epithelium" EXACT [OBOL:accepted] synonym: "hand digit epithelium" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] @@ -262298,6 +269643,8 @@ relationship: part_of UBERON:0002389 ! manual digit id: UBERON:0005228 name: upper arm epithelium def: "An epithelium that is part of a forelimb stylopod [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0002113 xref: EMAPA:17425 xref: VHOG:0000990 @@ -262311,6 +269658,8 @@ relationship: part_of UBERON:0003822 ! forelimb stylopod id: UBERON:0005229 name: lower leg epithelium def: "An epithelium that is part of a lower leg [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001031 xref: EMAPA:17497 xref: VHOG:0001050 @@ -262330,6 +269679,8 @@ is_obsolete: true id: UBERON:0005233 name: medial-nasal process ectoderm def: "An ectoderm that is part of a medial nasal prominence [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001078 xref: EMAPA:16809 xref: FMA:312675 @@ -262346,6 +269697,8 @@ relationship: part_of UBERON:0004068 ! medial nasal prominence id: UBERON:0005234 name: optic eminence ectoderm def: "An ectoderm that is part of a optic eminence [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA:940 xref: EMAPA:16539 xref: RETIRED_EHDAA2:0001309 @@ -262359,6 +269712,8 @@ relationship: part_of UBERON:0004348 ! optic eminence id: UBERON:0005236 name: osseus labyrinth vestibule def: "A small, oval, bony chamber of the labyrinth. The vestibule contains the utricle and saccule, organs which are part of the balancing apparatus of the ear." [BTO:0003382, Wikipedia:Vestibule_of_the_ear] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bony labyrinth vestibule" EXACT [] synonym: "inner ear vestibule" RELATED [BTO:0003382] @@ -262392,6 +269747,8 @@ property_value: external_definition "The vestibule is the central part of the os [Term] id: UBERON:0005239 name: basal plate metencephalon +subset: human_subset +subset: mouse_subset synonym: "metencephalon basal plate" EXACT [EHDAA2:0001154] xref: EHDAA2:0001154 xref: EMAPA:17078 @@ -262402,6 +269759,8 @@ property_value: external_definition "The ventral half of the developing neural t [Term] id: UBERON:0005240 name: basal plate medulla oblongata +subset: human_subset +subset: mouse_subset synonym: "medulla oblongata basal plate" EXACT [EHDAA2:0001093] xref: EHDAA2:0001093 xref: EMAPA:17557 @@ -262427,6 +269786,8 @@ consider: VHOG:0001066 id: UBERON:0005243 name: interventricular septum endocardium def: "An endocardium that is part of a interventricular septum [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "endocardium of interventricular septum" EXACT [FMA:83584] synonym: "interventricular septum endocardial tissue" RELATED [VHOG:0000615] xref: EHDAA2:0000886 @@ -262443,6 +269804,8 @@ property_value: editor_note "TODO - split?" xsd:string id: UBERON:0005244 name: lobar bronchus of right lung cranial lobe alt_id: UBERON:0012060 +subset: human_subset +subset: mouse_subset synonym: "eparterial bronchus" RELATED [Wikipedia:Eparterial_bronchus] synonym: "lobar bronchus of cranial lobe" BROAD [EMAPA:17992] synonym: "right lung cranial lobe lobar bronchus" EXACT [EHDAA2:0001752] @@ -262465,6 +269828,8 @@ relationship: part_of UBERON:0002170 ! upper lobe of right lung id: UBERON:0005245 name: lobar bronchus of right lung caudal lobe def: "A lobar bronchus that is part of a lower lobe of right lung [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lobar bronchus of caudal lobe" EXACT [EMAPA:17987] xref: EHDAA2:0001744 xref: EMAPA:17987 @@ -262478,6 +269843,8 @@ relationship: part_of UBERON:0002171 ! lower lobe of right lung id: UBERON:0005248 name: bulbus cordis myocardium def: "A myocardium that is part of a bulbus cordis [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bulbus cordis cardiac muscle" RELATED [VHOG:0000609] xref: EMAPA:36488 xref: VHOG:0000609 @@ -262490,6 +269857,8 @@ relationship: part_of UBERON:0004706 ! bulbus cordis id: UBERON:0005249 name: metanephric renal pelvis def: "A renal pelvis that is part of a metanephros." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "metanephros pelvis" EXACT [VHOG:0000945] xref: VHOG:0000945 is_a: UBERON:0001224 ! renal pelvis @@ -262503,6 +269872,8 @@ property_value: homology_notes "The ureteric bud itself forms the collecting tub id: UBERON:0005250 name: stomatodeum gland def: "A gland that is part of a stomodeum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "stomatodaeum gland" EXACT [VHOG:0000658] xref: VHOG:0000658 @@ -262516,6 +269887,8 @@ property_value: editor_note "check this" xsd:string id: UBERON:0005251 name: yolk sac cavity def: "An anatomical cavity that is part of a yolk sac [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cavity of yolk sac" EXACT [FMA:63942] synonym: "yolk sac lumen" EXACT [] synonym: "yolk sac space" RELATED [FMA:63942] @@ -262536,6 +269909,8 @@ property_value: taxon_notes "In mammals, the yolk sac cavity contains fluid rath id: UBERON:0005252 name: lesser sac cavity def: "An anatomical cavity that is part of a lesser sac [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cavity of lesser sac" EXACT [FMA:9702] synonym: "cavity of omental bursa" EXACT [FMA:9702] synonym: "cavity of omental bursa viewed anatomically" EXACT [FMA:9702] @@ -262558,6 +269933,8 @@ id: UBERON:0005253 name: head mesenchyme def: "Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells." [ISBN:0683400088, MP:0011260] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "cephalic mesenchyme" EXACT [MP:0011260] @@ -262578,12 +269955,15 @@ intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000033 ! head relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0009142 {source="EHDAA2"} ! entire embryonic mesenchyme +relationship: part_of UBERON:8450003 ! embryonic craniocervical region property_value: external_definition "Mesoderm that will give rise, along with cranial neural crest cells, to connective tissue, bone and musculature in the head. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000113", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0005254 name: upper leg mesenchyme def: "Mesenchyme that is part of a developing hindlimb stylopod [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0002132 xref: EMAPA:17501 xref: VHOG:0000506 @@ -262596,6 +269976,8 @@ relationship: part_of UBERON:0000376 ! hindlimb stylopod id: UBERON:0005255 name: pedal digit mesenchyme def: "Mesenchyme that is part of a developing toe [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "finger ray mesenchyme" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "foot digit mesenchyme" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit mesenchyme" EXACT [OBOL:accepted] @@ -262616,6 +269998,8 @@ id: UBERON:0005256 name: trunk mesenchyme def: "Mesenchyme that is part of a developing trunk." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "trunk and cervical mesenchyme" RELATED [EHDAA2:0002092] xref: EFO:0003485 @@ -262638,6 +270022,8 @@ relationship: part_of UBERON:0009142 {source="EHDAA2"} ! entire embryonic mesenc id: UBERON:0005257 name: manual digit mesenchyme def: "Mesenchyme that is part of a developing finger [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anterior limb digital ray mesenchyme" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "finger mesenchyme" EXACT [] synonym: "finger ray mesenchyme" RELATED [https://orcid.org/0000-0002-6601-2165] @@ -262660,6 +270046,8 @@ property_value: editor_note "In EHDAA2, the metacarpal cartilage condensation is id: UBERON:0005258 name: upper arm mesenchyme def: "Mesenchyme that is part of a developing forelimb stylopod [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0002114 xref: EMAPA:17426 xref: VHOG:0000505 @@ -262672,6 +270060,8 @@ relationship: part_of UBERON:0003822 ! forelimb stylopod id: UBERON:0005259 name: lower leg mesenchyme def: "Mesenchyme that is part of a developing lower leg [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001032 xref: EMAPA:17498 xref: VHOG:0000752 @@ -262684,6 +270074,8 @@ relationship: part_of UBERON:0003823 ! hindlimb zeugopod id: UBERON:0005261 name: atrium cardiac jelly def: "A cardiac jelly that is part of an atrium [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:16343 xref: EMAPA:16814 xref: EMAPA:16821 @@ -262698,6 +270090,8 @@ property_value: external_definition "Cardiac jelly that is part of the atrium. [ id: UBERON:0005262 name: ventricle cardiac jelly def: "A cardiac jelly that is part of a ventricle [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: VHOG:0000943 is_a: UBERON:0003906 ! cardiac jelly intersection_of: UBERON:0003906 ! cardiac jelly @@ -262709,6 +270103,8 @@ property_value: external_definition "Cardiac jelly that is part of the ventricle id: UBERON:0005263 name: outflow tract cardiac jelly def: "A cardiac jelly that is part of a outflow tract [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001354 xref: EMAPA:16347 xref: VHOG:0000940 @@ -262740,6 +270136,8 @@ consider: VHOG:0000628 id: UBERON:0005268 name: renal cortex artery def: "An artery that supplies the renal cortex." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "kidney cortex artery" EXACT [MP:0011314] synonym: "renal cortex arterial system" RELATED [MA:0002582] @@ -262759,6 +270157,8 @@ relationship: supplies UBERON:0001225 ! cortex of kidney id: UBERON:0005269 name: renal cortex vein def: "Artery that receives blood from the renal cortex[MP, modified]." [MGI:csmith] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "kidney cortex vein" RELATED [MP:0011322] synonym: "renal cortex venous system" RELATED [MA:0002592] @@ -262777,6 +270177,8 @@ relationship: part_of UBERON:0001225 {source="MA"} ! cortex of kidney id: UBERON:0005270 name: renal cortex interstitium def: "A compartment of the renal cortex situated between basement membranes of epithelia and vessels that contains two contiguous cellular networks in mutual contact, one formed by interstitial fibroblasts, the other by dendritic cells." [PMID:18575881] +subset: human_subset +subset: mouse_subset synonym: "cortical stroma" RELATED [EMAPA:28136] synonym: "kidney cortex interstitium" EXACT [MA:0002608] synonym: "renal cortical interstitial tissue" EXACT [] @@ -262798,6 +270200,8 @@ id: UBERON:0005271 name: juxtamedullary cortex def: "The part of the renal cortex nearest to the medulla." [http://medical-dictionary.thefreedictionary.com/juxtamedullary+cortex] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "inner cortex of kidney" EXACT [FMA:74288] synonym: "inner renal cortex" EXACT [KUPO:0001008] synonym: "juxtamedullary cortex of kidney" EXACT [FMA:74288] @@ -262814,6 +270218,8 @@ id: UBERON:0005272 name: peritubular capillary def: "The tiny blood vessels that receive blood from the efferent arterioles of the glomerulus, and interact with superficial cortical nephrons allowing reabsorption and secretion between blood and the inner lumen of the nephron; peritubular capillaries are situated around the tubule and are at low pressure." [MGI:csmith, MP:0011321] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:36558 xref: MA:0002588 @@ -262828,6 +270234,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0005273 name: nail bed def: "Region of skin beneath the nail plate[WP]." [UBERON:gvg] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "nailbed" EXACT [] xref: EMAPA:35581 @@ -262844,6 +270252,8 @@ relationship: part_of UBERON:0004105 ! subungual region [Term] id: UBERON:0005274 name: proximal nail bed +subset: human_subset +subset: mouse_subset xref: EMAPA:37509 {source="MA:th"} xref: MA:0002709 is_a: UBERON:0005275 ! dorsal skin of digit @@ -262852,6 +270262,8 @@ relationship: part_of UBERON:0001705 {source="MA"} ! nail [Term] id: UBERON:0005275 name: dorsal skin of digit +subset: human_subset +subset: mouse_subset synonym: "dorsal digit skin" EXACT [] synonym: "skin of dorsal part of digit" EXACT [] is_a: UBERON:0015249 ! digit skin @@ -262861,6 +270273,8 @@ relationship: part_of UBERON:0002544 ! digit id: UBERON:0005276 name: dorsal skin of finger def: "A dorsal skin of digit that is part of a manual digit." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "dorsal finger skin" EXACT [] synonym: "skin of dorsal part of finger" EXACT [FMA:38320] synonym: "subdivision of skin of dorsal part of finger" EXACT [FMA:60346] @@ -262877,6 +270291,8 @@ property_value: external_ontology_notes "this class is explicitly the union of t id: UBERON:0005277 name: dorsal skin of toe def: "A dorsal skin of digit that is part of a pedal digit." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "dorsal toe skin" EXACT [] synonym: "skin of dorsal part of toe" EXACT [FMA:37868] synonym: "subdivision of skin of dorsal part of toe" EXACT [FMA:60523] @@ -262893,6 +270309,8 @@ property_value: external_ontology_notes "this class is explicitly the union of t id: UBERON:0005278 name: nail bed of finger def: "A nail bed that is part of a manual digit." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "nail bed of finger" EXACT [FMA:60348] xref: FMA:60348 xref: SCTID:244199003 @@ -262907,6 +270325,8 @@ relationship: part_of UBERON:0002389 ! manual digit id: UBERON:0005279 name: nail bed of toe def: "A nail bed that is part of a pedal digit." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "nail bed of toe" EXACT [FMA:60529] xref: FMA:60529 xref: SCTID:244200000 @@ -262929,6 +270349,8 @@ id: UBERON:0005281 name: ventricular system of central nervous system def: "A set of structures containing cerebrospinal fluid in the brain. It is continuous with the central canal of the spinal cord[WP]." [Wikipedia:Ventricular_system] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "CNS ventricular system" EXACT [EHDAA2:0004362] synonym: "ventricle system" RELATED [Wikipedia:Ventricular_system] @@ -262953,6 +270375,8 @@ property_value: editor_note "TODO - resolve space vs structure conflation. We fo [Term] id: UBERON:0005282 name: ventricular system of brain +subset: human_subset +subset: mouse_subset synonym: "brain ventricular system" EXACT [VHOG:0000005] xref: CALOHA:TS-1295 xref: EMAPA:37447 {source="MA:th"} @@ -262968,6 +270392,8 @@ property_value: homology_notes "The early development of most vertebrate brains id: UBERON:0005283 name: tela choroidea def: "A structure found in the walls of the ventricles of the brain, consisting of part of the meninges (pia mater in mammals) plus ependyma[cjm]." [http://isc.temple.edu/neuroanatomy/lab/embryo_new/choroid/, ISBN:0471888893, Wikipedia:Tela_chorioidea] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "tela chorioidea" RELATED [FMA:242849] @@ -262988,6 +270414,8 @@ property_value: structure_notes "Vascularized tela choroidea is choroid plexus." id: UBERON:0005286 name: tela choroidea of midbrain cerebral aqueduct def: "Tela choroidea that lines the tectal ventricle." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "tela chorioidea tectal ventricle" EXACT [ZFA:0005157] synonym: "tela choroidea of cerebral aqueduct" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "tela choroidea tectal ventricle" EXACT [ZFA:0005157] @@ -263004,6 +270432,8 @@ property_value: external_definition "Tela chorioidea that lines the tectal ventr id: UBERON:0005287 name: tela choroidea of fourth ventricle def: "Tela chorioidea that lines the fourth ventricle[ZFA]. The tela chorioidea of the fourth ventricle is the name applied to the triangular fold of pia mater which is carried upward between the cerebellum and the medulla oblongata. It consists of two layers, which are continuous with each other in front, and are more or less adherent throughout: The posterior layer covers the antero-inferior surface of the cerebellum. The anterior layer is applied to the structures which form the lower part of the roof of the ventricle, and is continuous inferiorly with the pia mater on the inferior peduncles and closed part of the medulla[WP]." [Wikipedia:Tela_chorioidea_of_fourth_ventricle, ZFIN:curator] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "choroid membrane" EXACT [FMA:78493] synonym: "choroid membrane of fourth ventricle" EXACT [FMA:78493] @@ -263031,6 +270461,8 @@ property_value: external_definition "Tela chorioidea that lines the fourth ventr id: UBERON:0005288 name: tela choroidea of third ventricle def: "Tela chorioidea that lines the third ventricle[ZFA]. The part of the choroid plexus in relation to the body of the ventricle forms the vascular fringed margin of a triangular process of pia mater, named the tela chorioidea of the third ventricle, and projects from under cover of the lateral edge of the fornix. Blood is supplied by branches from the superior cerebellar artery[WP]." [Wikipedia:Tela_chorioidea_of_third_ventricle, ZFIN:curator] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "choroid membrane of third ventricle" EXACT [FMA:78463] synonym: "tela chorioidea of third ventricle" EXACT [] @@ -263057,6 +270489,8 @@ property_value: external_definition "Tela chorioidea that lines the third ventri id: UBERON:0005289 name: tela choroidea of telencephalic ventricle def: "Tela chorioidea that lines the telencephalic ventricle." [ZFIN:curator] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "tela chorioidea of lateral ventricle" EXACT [] synonym: "tela chorioidea of telencephalic ventricle" EXACT [] @@ -263080,6 +270514,8 @@ relationship: part_of UBERON:0002285 ! telencephalic ventricle id: UBERON:0005290 name: myelencephalon def: "The posterior part of the developing vertebrate hindbrain or the corresponding part of the adult brain composed of the medulla oblongata and a portion of the fourth ventricle; as well as the glossopharyngeal nerve (CN IX), vagus nerve (CN X), accessory nerve (CN XI), hypoglossal nerve (CN XII), and a portion of the vestibulocochlear nerve (CN VIII).[BTO,WP]." [BTO:0000758, Wikipedia:Myelencephalon] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "myelencephalon (medulla oblongata)" RELATED [DHBA:10662] xref: BTO:0000758 @@ -263108,6 +270544,8 @@ property_value: terminology_notes "the terms metencephalon and myelencephalon ar id: UBERON:0005291 name: embryonic tissue def: "A portion of tissue that is part of an embryo." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: upper_level synonym: "developing tissue" RELATED [] @@ -263124,6 +270562,8 @@ id: UBERON:0005292 name: extraembryonic tissue def: "Portion of tissue that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "extra-embryonic tissue" EXACT [] xref: BTO:0003360 xref: CALOHA:TS-2119 @@ -263139,6 +270579,8 @@ relationship: part_of UBERON:0016887 ! entire extraembryonic component id: UBERON:0005293 name: cerebellum lobe def: "A major subdivision of the cerebellum: anterior, posterior and flocculonodular." [Wikipedia:Anatomy_of_the_cerebellum#Gross_anatomical_divisions] +subset: human_subset +subset: mouse_subset synonym: "cerebellar lobe" EXACT [FMA:242392] synonym: "cerebellar lobes" RELATED [BAMS:CBl] synonym: "lobe of cerebellum" EXACT [FMA:242392] @@ -263157,6 +270599,8 @@ id: UBERON:0005294 name: gonadal ridge def: "The elevation of thickened mesothelium and underlying mesenchyme found on the ventromedial border of the embryonic mesonephros in which the primordial germ cells become embedded, establishing it as the primordium of the testis or ovary." [MGI:anna, MP:0011411] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "crista gonadalis" RELATED OMO:0003011 [Wikipedia:Gonadal_ridge] synonym: "genital cord" RELATED [MP:0011411] @@ -263189,6 +270633,8 @@ property_value: editor_note "TODO - check developmental relationships. merge wit id: UBERON:0005295 name: sex cord def: "Cordlike masses of epithelial tissue that invaginate from germinal epithelium of the gonad and give rise to seminiferous tubules and rete testes in the male, and primary ovarian follicles and rete ovarii in the female." [http://www.answers.com/topic/sex-cord, Wikipedia:Sex_cords] +subset: human_subset +subset: mouse_subset synonym: "genital cord" RELATED [] synonym: "gonad cord" RELATED [] synonym: "gonadal cord" RELATED [] @@ -263208,6 +270654,8 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:0005296 name: ovary sex cord def: "Structures that develop from sex cords in the female. After further development they become the ovarian follicles." [Wikipedia:Cortical_cords] +subset: human_subset +subset: mouse_subset synonym: "cortical cord" RELATED [] synonym: "cortical sex cord" RELATED [] synonym: "ovary primitive sex cord" RELATED [] @@ -263233,6 +270681,8 @@ property_value: editor_note "TODO check secondary vs cortical vs ovary" xsd:stri id: UBERON:0005297 name: testis sex cord def: "The testis cords are precursors to the rete testis. They play several different roles in the development of the male genitals[WP]." [Wikipedia:Testis_cords] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "primary sex cord" RELATED [] synonym: "testis cord" EXACT [MP:0006424] @@ -263256,6 +270706,8 @@ property_value: editor_note "TODO - check primary vs testis" xsd:string id: UBERON:0005298 name: skin of clitoris def: "A zone of skin that is part of a clitoris [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "clitoris skin" EXACT [] xref: FMA:20168 xref: SCTID:361374002 @@ -263269,6 +270721,8 @@ relationship: part_of UBERON:0002411 ! clitoris id: UBERON:0005299 name: prepuce of clitoris def: "A retractable double-layered fold of skin and mucous membrane that covers the clitoral glans." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Clitoral_hood] +subset: human_subset +subset: mouse_subset synonym: "clitoral hood" EXACT [Wikipedia:Clitoral_hood] synonym: "clitoral prepuce" EXACT [] synonym: "clitoris prepuce" EXACT [] @@ -263301,6 +270755,7 @@ replaced_by: UBERON:0003937 id: UBERON:0005301 name: male preputial gland def: "One of the sebaceous glands of the corona and neck of the glans penis." [https://sourceforge.net/p/obo/mammalian-phenotype-requests/1261/, MP:0002717] +subset: mouse_subset subset: pheno_slim synonym: "gland of Tyson" RELATED [BTO:0001111] synonym: "preputial gland" BROAD [BTO:0001111, EMAPA:30640] @@ -263328,6 +270783,7 @@ property_value: external_ontology_notes "FMA:19653 was previously placed here, b id: UBERON:0005302 name: female preputial gland def: "The paired, lobulated, modified sebaceous glands located on the side of the clitoris in female rodents; in contrast to the preputial glands in male rodents, clitoral glands are a minor source of olfactory stimuli contributing to sexual attractivity; unlike other sebaceous glands, they undergo progressive atrophy of the glandular portion with marked ductal ectasia as rodents age." [https://sourceforge.net/p/obo/mammalian-phenotype-requests/1261/, MP:0011834] +subset: mouse_subset subset: pheno_slim synonym: "clitoral gland" EXACT [MA:0001702] synonym: "preputial gland of female" EXACT [EMAPA:30499] @@ -263351,6 +270807,8 @@ id: UBERON:0005303 name: hypogastric nerve def: "The transition between the superior hypogastric plexus and the inferior hypogastric plexus." [Wikipedia:Hypogastric_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "hypogastric nerve plexus" EXACT [MA:0001140] synonym: "hypogastric plexus" EXACT [EMAPA:18225] synonym: "nervus hypogastricus" RELATED OMO:0003011 [Wikipedia:Hypogastric_nerve] @@ -263373,6 +270831,8 @@ id: UBERON:0005304 name: submucous nerve plexus def: "The gangliated plexus of unmyelinated nerve fibers that ramify the stomach and intestinal submucosa." [ISBN:0-683-40008-8, MP:0010800] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "Henle's plexus" RELATED [MA:0001149] synonym: "Meissner's plexus" RELATED [HP:0002251, MA:0001149] @@ -263398,6 +270858,8 @@ property_value: external_ontology_notes "in FMA this is part of the esophagus, d id: UBERON:0005305 name: thyroid follicle def: "Discrete, cystlike units of the thyroid gland that are lined with cuboidal epithelium and are filled with a colloid substance, about 30 to each lobule[BTO]." [BTO:0004708] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -263423,6 +270885,8 @@ id: UBERON:0005306 name: blastema def: "A blastema is a mass of cells capable of growth and regeneration into organs or body parts. Historically blastema have been thought to be composed of undifferentiated pluripotent cells, but recent research indicates that in some organisms blastema may retain memory of tissue origin.[1] Blastemata are typically found in the early stages of an organism's development such as in embryos, and in the regeneration of tissues, organs and bone[WP]. A regenerating tissue composed of a proliferative mass of undifferentiated progenitor cells from which new differentiated structures arise[ZFA]." [Wikipedia:Blastema, ZFA:0001270, ZFIN:ZDB-PUB-061108-12] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "blastemata" EXACT OMO:0003004 [] synonym: "regeneration blastema" EXACT [ZFIN:ZDB-PUB-061108-12] xref: BTO:0001638 @@ -263449,6 +270913,8 @@ relationship: present_in_taxon NCBITaxon:7227 {source="GO"} ! Drosophila melanog id: UBERON:0005308 name: nephrostome def: "The nephrostome is the opening of the pronephros into the body cavity[GO]." [GO:0039018] +subset: human_subset +subset: mouse_subset xref: AAO:0011069 xref: Wikipedia:Nephrostome xref: XAO:0000062 @@ -263460,6 +270926,8 @@ relationship: part_of UBERON:0002120 ! pronephros id: UBERON:0005309 name: pronephric nephron def: "A pronephric nephron is the functional unit of the pronephros[GO]." [GO:0039019] +subset: human_subset +subset: mouse_subset xref: AAO:0011091 xref: XAO:0000285 is_a: UBERON:0001285 ! nephron @@ -263473,6 +270941,8 @@ property_value: external_definition "The structure that is the basic functional id: UBERON:0005310 name: pronephric nephron tubule def: "The pronephric nephron tubule is an epithelial tube that is part of the pronephric nephron and connects the filtration unit (glomerulus or glomus) of the pronephros to the pronephric duct[GO]." [GO:0039020] +subset: human_subset +subset: mouse_subset synonym: "ciliated neck segment" RELATED [ZFA:0001558] synonym: "pronephric tubule" EXACT [ZFA:0001558] xref: TAO:0001558 @@ -263490,6 +270960,8 @@ property_value: external_definition "Bilaterally paired tubes connecting the pro id: UBERON:0005311 name: mammary placode def: "The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596] +subset: human_subset +subset: mouse_subset synonym: "mammary anlage" RELATED [] xref: EMAPA:35541 is_a: UBERON:0011814 {source="NCBIBook:NBK53175"} ! non-neurogenic ectodermal placode @@ -263502,12 +270974,16 @@ property_value: taxon_notes "in mouse, five pairs of symmetrically positioned ma id: UBERON:0005312 name: primary ureteric bud def: "Missing definition for term UBERON:0005312. Please replace it using linked reference." [GO:0060682] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000084 ! ureteric bud [Term] id: UBERON:0005313 name: mammary duct terminal end bud def: "A unique club-shaped epithelial structure that develops at the tip of the mammary duct at the onset of puberty under the action of circulating hormones." [MGI:anna] +subset: human_subset +subset: mouse_subset xref: EMAPA:37900 {source="MA:th"} is_a: UBERON:0003244 ! epithelium of mammary gland is_a: UBERON:0005153 ! epithelial bud @@ -263520,6 +270996,8 @@ property_value: structure_notes "terminal end buds (TEBs) consist of an outer la id: UBERON:0005314 name: alveolar primary septum def: "A primary alveolar septum is a specialized epithelium that surrounds the saccule as it forms[GO]." [GO:0061143] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004821 ! pulmonary alveolus epithelium relationship: bounding_layer_of UBERON:0000116 ! lung saccule relationship: part_of UBERON:0000116 ! lung saccule @@ -263529,6 +271007,8 @@ property_value: editor_note "TODO - check UBERON:0004893 interalveolar septum" x id: UBERON:0005315 name: alveolar secondary septum def: "A secondary alveolar septum is a specialized epithelium that subdivides the initial saccule[GO]." [GO:0061144] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004821 ! pulmonary alveolus epithelium relationship: bounding_layer_of UBERON:0000116 ! lung saccule relationship: part_of UBERON:0000116 ! lung saccule @@ -263538,6 +271018,8 @@ property_value: editor_note "TODO - check UBERON:0004893 interalveolar septum" x id: UBERON:0005316 name: endocardial endothelium def: "The endothelial lining of the endocardium." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "endocardium endothelium" EXACT [FMA:83596] synonym: "endothelium of endocardium" EXACT [FMA:83596] xref: FMA:83596 @@ -263550,6 +271032,8 @@ relationship: part_of UBERON:0002165 ! endocardium id: UBERON:0005317 name: pulmonary artery endothelium def: "An pulmonary artery endothelium is an epithelium that lines the pulmonary artery[GO]." [GO:0061155] +subset: human_subset +subset: mouse_subset synonym: "pulmonary artery endothelial tube" EXACT [GO:0061155] xref: BTO:0000137 is_a: UBERON:0001917 ! endothelium of artery @@ -263561,6 +271045,8 @@ relationship: part_of UBERON:0002012 ! pulmonary artery id: UBERON:0005319 name: mesonephric collecting duct def: "The collecting duct is the final common path through which urine flows before entering the ureter and then emptying into the bladder[GO]." [GO:0061211] +subset: human_subset +subset: mouse_subset xref: AAO:0010390 xref: XAO:0000151 is_a: UBERON:0001232 ! collecting duct of renal tubule @@ -263574,6 +271060,8 @@ relationship: part_of UBERON:0005322 {is_inferred="true", source="https://github id: UBERON:0005320 name: mesonephric juxtaglomerular apparatus def: "The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]." [GO:0061212] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002303 ! juxtaglomerular apparatus is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002303 ! juxtaglomerular apparatus @@ -263584,6 +271072,8 @@ relationship: part_of UBERON:0000080 ! mesonephros id: UBERON:0005321 name: mesonephric smooth muscle tissue def: "Missing definition for term UBERON:0005321. Please replace it using linked reference." [GO:0061214] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0000080 ! mesonephros @@ -263593,6 +271083,8 @@ relationship: part_of UBERON:0000080 ! mesonephros id: UBERON:0005322 name: mesonephric nephron def: "A nephron that is part of a mesonephros." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "nephron of mesonephros" EXACT [] synonym: "stage IV nephron" RELATED [ZFA:0005592] xref: AAO:0010387 @@ -263610,6 +271102,8 @@ property_value: external_definition "The structure that is the basic functional id: UBERON:0005323 name: mesonephric mesenchyme def: "Mesonephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the mesonephros[GO]." [GO:0061219] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: AAO:0011062 xref: EHDAA2:0001132 @@ -263625,6 +271119,8 @@ relationship: part_of UBERON:0000080 ! mesonephros id: UBERON:0005324 name: mesonephric macula densa def: "The mesonephric macula densa is an area of specialized cells in the distal tubule of the mesonephros that makes contact with the vascular pole of the glomerulus[GO]." [GO:0061220] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002335 ! macula densa is_a: UBERON:0005330 ! mesonephric nephron epithelium intersection_of: UBERON:0002335 ! macula densa @@ -263636,6 +271132,8 @@ relationship: part_of UBERON:0005320 {is_inferred="true", source="https://github id: UBERON:0005325 name: mesonephric glomerulus def: "The mesonephric glomerulus is a capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the mature vertebrate kidney, or mesonephros[GO]." [GO:0061224] +subset: human_subset +subset: mouse_subset synonym: "glomerulus" BROAD SENSU [AAO:0010388] xref: AAO:0010388 xref: EMAPA:30568 @@ -263653,6 +271151,8 @@ property_value: homology_notes "In animals in which the mesonephros is the termi id: UBERON:0005326 name: mesonephric glomerulus vasculature def: "The mesonephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the mesonephric glomerulus[GO]." [GO:0061231] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004190 ! renal glomerulus vasculature intersection_of: UBERON:0004190 ! renal glomerulus vasculature intersection_of: part_of UBERON:0000080 ! mesonephros @@ -263663,6 +271163,8 @@ relationship: part_of UBERON:0005325 {is_inferred="true", source="https://github id: UBERON:0005327 name: mesonephric glomerular epithelium def: "A mesonephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the mesonephros[GO]." [GO:0061232] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004188 ! glomerular epithelium is_a: UBERON:0005330 ! mesonephric nephron epithelium intersection_of: UBERON:0004188 ! glomerular epithelium @@ -263675,6 +271177,8 @@ relationship: part_of UBERON:0005325 {is_inferred="true", source="https://github id: UBERON:0005328 name: mesonephric comma-shaped body def: "The mesonephric comma-shaped body is the precursor structure to the mesonephric S-shaped body that contributes to the morphogenesis of a nephron in the mesonephros[GO]." [GO:0061236] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004198 ! comma-shaped body intersection_of: UBERON:0004198 ! comma-shaped body intersection_of: part_of UBERON:0000080 ! mesonephros @@ -263684,6 +271188,8 @@ relationship: part_of UBERON:0000080 ! mesonephros id: UBERON:0005329 name: mesonephric nephron tubule def: "A mesonephric nephron tubule is an epithelial tube that is part of the mesonephric nephron, the functional part of the mesonephros[GO]." [GO:0061240] +subset: human_subset +subset: mouse_subset synonym: "mesonephric renal tubule" EXACT [https://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0001231 ! nephron tubule @@ -263694,6 +271200,8 @@ relationship: part_of UBERON:0000080 ! mesonephros id: UBERON:0005330 name: mesonephric nephron epithelium def: "The mesonephric nephron epithelium is a tissue that covers the surface of a nephron in the mesonephros[GO]." [GO:0061241] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004211 ! nephron epithelium is_a: UBERON:0005103 ! mesonephric epithelium intersection_of: UBERON:0004211 ! nephron epithelium @@ -263705,6 +271213,8 @@ relationship: part_of UBERON:0005322 {is_inferred="true", source="https://github id: UBERON:0005331 name: mesonephric renal vesicle def: "The renal vesicle is the primordial structure of the mesonephric nephron epithelium, and is formed by the condensation of mesenchymal cells[GO]." [GO:0061243] +subset: human_subset +subset: mouse_subset synonym: "mesonephric vesicle" EXACT [] xref: SCTID:361407006 xref: ZFA:0005586 @@ -263720,6 +271230,8 @@ relationship: part_of UBERON:0000080 ! mesonephros id: UBERON:0005332 name: mesonephric S-shaped body def: "The mesonephric S-shaped body is the successor of the mesonephric comma-shaped body that contributes to the morphogenesis of a nephron in the mesonephros[GO]." [GO:0061244] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004199 ! S-shaped body intersection_of: UBERON:0004199 ! S-shaped body intersection_of: part_of UBERON:0000080 ! mesonephros @@ -263730,6 +271242,8 @@ id: UBERON:0005333 name: mammary bud alt_id: UBERON:0004181 def: "A bulb of epithelial cells that forms from the mammary placode that develops into the mammary gland." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "lactiferous gland bud" EXACT [] synonym: "mammary gland bud" EXACT [GO:0060648] synonym: "mammary primordium" RELATED [] @@ -263747,6 +271261,8 @@ property_value: development_notes "produced along the length of the embryonic ma id: UBERON:0005334 name: oral lamina propria def: "A lamina propria that is part of a mucosa of oral region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lamina propria of oral mucosa" EXACT [] xref: EMAPA:26947 is_a: UBERON:0000030 ! lamina propria @@ -263758,6 +271274,8 @@ relationship: part_of UBERON:0003343 ! mucosa of oral region id: UBERON:0005335 name: chorioallantoic membrane def: "The chorioallantoic membrane is a vascular membrane found in eggs of some amniotes, such as birds and reptiles. It is formed by the fusion of the mesodermal layers of two developmental structures: the allantois and the chorion. Three different layers compose the chorioallantoic membrane; these are called the chorionic epithelium, the mesenchyme and the allantoic epithelium. Blood capillaries and sinuses are found between epithelial cells of the chorionic layer, allowing close contact (within 0.2 N id: UBERON:0006610 name: tunica albuginea def: "Denser fibrous covering over one of: penis, testicles or ovaries." [Wikipedia:Tunica_albuginea] +subset: human_subset +subset: mouse_subset synonym: "tunica albuginea corporis spongiosi" RELATED OMO:0003011 [Wikipedia:Tunica_albuginea_(penis)] synonym: "tunica albuginea corporum cavernosorum" RELATED OMO:0003011 [Wikipedia:Tunica_albuginea_(penis)] xref: FMA:19631 @@ -279743,6 +288956,8 @@ property_value: editor_note "may be obsoleted after integumental system overhaul id: UBERON:0006614 name: aponeurosis def: "A sheet of extracellular matrix." [AEO:0000092, Wikipedia:Aponeurosis] +subset: human_subset +subset: mouse_subset synonym: "aponeuroses" RELATED OMO:0003004 [Wikipedia:Aponeurosis] synonym: "aponeurotic" RELATED [Wikipedia:Aponeurosis] xref: AEO:0000092 @@ -279766,6 +288981,8 @@ property_value: external_ontology_notes "in ZFA, aponeuroses are subtypes of ten id: UBERON:0006615 name: venous sinus def: "A large vein or channel for the circulation of venous blood." [http://medical-dictionary.thefreedictionary.com/venous+sinus] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "blood sinus" RELATED [ZFA:0007072] xref: MA:0000070 @@ -279780,6 +288997,8 @@ property_value: editor_note "check if it is valid to group ZFA class here." xsd: id: UBERON:0006616 name: right external ear def: "An external ear that is in the right side of a multicellular organism." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "right auricular region" BROAD [FMA:53643] xref: EMAPA:37361 {source="MA:th"} @@ -279795,6 +289014,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0006617 name: left external ear def: "An external ear that is in the left side of a multicellular organism." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "left auricular region" BROAD [FMA:53644] xref: EMAPA:37360 {source="MA:th"} @@ -279810,6 +289031,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0006618 name: atrium auricular region def: "A small conical pouch projections located on the upper anterior portion of each atrium of the heart." [MP:0010489, Wikipedia:Auricular_appendage] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "atrial appendage" EXACT [] synonym: "atrial auricle" EXACT [MP:0010489] @@ -279838,6 +289061,8 @@ relationship: part_of UBERON:0002081 ! cardiac atrium id: UBERON:0006630 name: left atrium auricular region def: "A muscular pouch connected to the left atrium of the heart." [Wikipedia:Left_atrial_appendage] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "auricula sinistra" EXACT [Wikipedia:Right_atrial_appendage] synonym: "auricula sinistra" RELATED OMO:0003011 [Wikipedia:Left_atrial_appendage] @@ -279868,6 +289093,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b7/Gr id: UBERON:0006631 name: right atrium auricular region def: "A small conical muscular pouch attached to the right atrium of the heart." [Wikipedia:Right_atrial_appendage] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "auricula dextra" EXACT [Wikipedia:Right_atrial_appendage] synonym: "heart right atrial appendage" RELATED [] @@ -279897,6 +289124,8 @@ id: UBERON:0006632 name: musculo-phrenic artery def: "An artery with its origin in the lateral terminal branch of the internal thoracic artery, with distribution to the diaphragm and the intercostal muscles, and with anastomoses to the branches of the pericardiacophrenic and inferior phrenic." [http://medical-dictionary.thefreedictionary.com/musculophrenic+artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "musculophrenic artery" EXACT [FMA:10645] xref: EMAPA:19215 xref: FMA:10645 @@ -279915,6 +289144,8 @@ id: UBERON:0006633 name: coracoid process of scapula def: "A process of the scapula in most mammals representing the remnant of the coracoid bone of lower vertebrates thas has become fused with the scapula." [http://www.merriam-webster.com/medical/coracoid%20process, PHENOSCAPE:ad] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "coracoid process" EXACT [Wikipedia:Coracoid_process] synonym: "coracoid process of the scapula" EXACT [Wikipedia:Coracoid_process] synonym: "processus coracoideus" RELATED OMO:0003011 [Wikipedia:Coracoid_process] @@ -279935,6 +289166,8 @@ id: UBERON:0006634 name: lingual vein def: "The lingual veins begin on the dorsum, sides, and under surface of the tongue, and, passing backward along the course of the lingual artery, end in the internal jugular vein. The vena comitans of the hypoglossal nerve (ranine vein), a branch of considerable size, begins below the tip of the tongue, and may join the lingual; generally, however, it passes backward on the Hyoglossus, and joins the common facial." [Wikipedia:Lingual_veins] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "deep lingual veins" RELATED [Wikipedia:Lingual_veins] synonym: "lingual vein" RELATED [Wikipedia:Lingual_veins] synonym: "ranine" RELATED [Wikipedia:Lingual_veins] @@ -279956,6 +289189,8 @@ property_value: external_definition "Vein which collects blood from the tongue a id: UBERON:0006635 name: anterior abdominal wall def: "The abdominal wall represents the boundaries of the abdominal cavity. The abdominal wall is split into the posterior (back), lateral (sides) and anterior (front) walls. There is a common set of layers covering and forming all the walls: the deepest being the extraperitoneal fat, the parietal peritoneum, and a layer of fascia which has different names over where it covers (eg transversalis, psoas fascia). Superficial to these, but not present in the posterior wall are the three layers of muscle, the transversus abdominis (transverse abdominal muscle), the internal (obliquus internus) and the external oblique (obliquus externus)." [Wikipedia:Abdominal_wall] +subset: human_subset +subset: mouse_subset synonym: "ventral abdominal wall" EXACT [] xref: EHDAA:5976 xref: FMA:14627 @@ -279970,6 +289205,8 @@ id: UBERON:0006636 name: lumbar artery def: "The lumbar arteries are in series with the intercostals. They are usually four in number on either side, and arise from the back of the aorta, opposite the bodies of the upper four lumbar vertebrC&. A fifth pair, small in size, is occasionally present: they arise from the middle sacral artery. They run lateralward and backward on the bodies of the lumbar vertebrC&, behind the sympathetic trunk, to the intervals between the adjacent transverse processes, and are then continued into the abdominal wall. The arteries of the right side pass behind the inferior vena cava, and the upper two on each side run behind the corresponding crus of the diaphragm. The arteries of both sides pass beneath the tendinous arches which give origin to the Psoas major, and are then continued behind this muscle and the lumbar plexus. They now cross the Quadratus lumborum, the upper three arteries running behind, the last usually in front of the muscle. At the lateral border of the Quadratus lumborum they pierce the posterior aponeurosis of the Transversus abdominis and are carried forward between this muscle and the Obliquus internus. They anastomose with the lower intercostal, the subcostal, the iliolumbar, the deep iliac circumflex, and the inferior epigastric arteries." [Wikipedia:Lumbar_arteries] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria lumbalis" RELATED [Wikipedia:Lumbar_arteries] synonym: "arteriae lumbales" RELATED OMO:0003011 [Wikipedia:Lumbar_arteries] synonym: "lumbar arterial tree" EXACT [FMA:14735] @@ -279988,6 +289225,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bd/Gr [Term] id: UBERON:0006637 name: celiac trunk +subset: human_subset +subset: mouse_subset synonym: "coeliac trunk" EXACT [EHDAA2:0004519, FMA:14812] synonym: "coeliaco-mesenteric trunk" EXACT [FMA:14812] synonym: "Haller's tripus" EXACT [FMA:14812] @@ -280004,6 +289243,8 @@ relationship: part_of UBERON:0001640 ! celiac artery id: UBERON:0006638 name: remnant of urachus def: "The median umbilical ligament is a structure in human anatomy. It is a shrivelled piece of tissue that represents the remnant of the embryonic urachus. It extends from the apex of the bladder to the umbilicus, on the deep surface of the anterior abdominal wall. It is unpaired. It is covered by the median umbilical fold Lateral to this structure are the medial umbilical ligament (which is a different structure, not to be confused) and the lateral umbilical ligament." [Wikipedia:Median_umbilical_ligament] +subset: human_subset +subset: mouse_subset synonym: "ligamentum umbilicale medianum" RELATED OMO:0003011 [Wikipedia:Median_umbilical_ligament] synonym: "median umbilical fold" RELATED [Wikipedia:Median_umbilical_ligament] synonym: "median umbilical ligament" EXACT [FMA:16568] @@ -280024,6 +289265,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ef/Gr id: UBERON:0006639 name: crus of penis def: "The continuation of each corpus cavernosum of the penis, diverging posteriorly to be attached to the pubic arch." [http://medical-dictionary.thefreedictionary.com/crus] +subset: human_subset +subset: mouse_subset synonym: "crura of penis" RELATED [Wikipedia:Crus_of_penis] synonym: "crus of penis" EXACT [FMA:18248] synonym: "crus penis" RELATED OMO:0003011 [Wikipedia:Crus_of_penis] @@ -280045,6 +289288,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ef/Gr id: UBERON:0006640 name: crus of clitoris def: "The continuation of the clitoris on each side of the corpus cavernosum, diverging from the body posteriorly and attached to the pubic arch." [http://dictionary.reference.com/browse/crus+of+clitoris] +subset: human_subset +subset: mouse_subset synonym: "clitoral crura" RELATED OMO:0003004 [Wikipedia:Clitoral_crura] synonym: "clitoris crus" EXACT [FMA:20175] synonym: "crura of clitoris" RELATED [Wikipedia:Clitoral_crura] @@ -280068,6 +289313,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Cl id: UBERON:0006641 name: appendix epididymis def: "On the head of the epididymis is a small stalked appendage (sometimes duplicated). It is named the appendix of the epididymis (or pedunculated hydatid), and is usually regarded as a detached efferent duct. This structure is derived from the Wolffian duct as opposed to the appendix testis which is derived from the mullerian duct remnant." [Wikipedia:Appendix_of_epididymidis] +subset: human_subset +subset: mouse_subset synonym: "appendix epididymidis" RELATED OMO:0003011 [Wikipedia:Appendix_of_epididymidis] synonym: "appendix epididymis" RELATED [Wikipedia:Appendix_of_epididymidis] synonym: "appendix of epididymis" EXACT [FMA:18268] @@ -280088,6 +289335,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gr id: UBERON:0006642 name: muscle layer of oviduct def: "A muscle layer that is part of a fallopian tube." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscle layer of fallopian tube" EXACT [FMA:18318] synonym: "muscle layer of oviduct" EXACT [FMA:18318] synonym: "muscle layer of uterine tube" EXACT [FMA:18318] @@ -280111,6 +289360,8 @@ relationship: part_of UBERON:0003889 ! fallopian tube id: UBERON:0006643 name: tunica albuginea of testis def: "The dense fibrous connective tissue layer that covers the testis." [MP:0013738] +subset: human_subset +subset: mouse_subset synonym: "testis tunica albuginea" EXACT [MP:0013738] synonym: "tunica albuginea" BROAD [EHDAA2:0002096, ncithesaurus:Tunica_Albuginea, VHOG:0000801] synonym: "tunica albuginea (testicles)" RELATED [Wikipedia:Tunica_albuginea_of_testis] @@ -280137,6 +289388,8 @@ property_value: homology_notes "The tunica albuginea testis is the major compone [Term] id: UBERON:0006644 name: tunica albuginea of ovary +subset: human_subset +subset: mouse_subset synonym: "overay tunica albuginea" EXACT [] synonym: "tunica albuginea ovarii" EXACT OMO:0003011 [FMA:18630, FMA:TA] xref: EMAPA:30522 @@ -280153,6 +289406,8 @@ relationship: part_of UBERON:0001307 ! capsule of ovary id: UBERON:0006645 name: adventitia of epididymis def: "An adventitia that is part of a epididymis." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epididymis adventitia" EXACT [FMA:19136] xref: EMAPA:30443 xref: FMA:19136 @@ -280167,6 +289422,8 @@ relationship: part_of UBERON:0001301 ! epididymis id: UBERON:0006646 name: muscle layer of epididymis def: "A muscle layer that is part of a epididymis." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:30747 xref: FMA:19149 is_a: UBERON:0004120 ! mesoderm-derived structure @@ -280180,6 +289437,8 @@ relationship: part_of UBERON:0001301 ! epididymis id: UBERON:0006647 name: adventitia of ductus deferens def: "An adventitia that is part of a vas deferens." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "adventitia of deferent duct" EXACT [FMA:19238] synonym: "adventitia of ductus deferens" EXACT [FMA:19238] synonym: "adventitia of vas deferens" EXACT [FMA:19238] @@ -280199,6 +289458,8 @@ relationship: part_of UBERON:0001000 ! vas deferens id: UBERON:0006648 name: adventitia of seminal vesicle def: "An adventitia that is part of a seminal vesicle." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "adventitia of seminal gland" EXACT [FMA:19403] synonym: "seminal vesicle adventitia" EXACT [FMA:19403] synonym: "tunica adventitia (vesicula seminalis)" EXACT [FMA:19403] @@ -280218,6 +289479,8 @@ id: UBERON:0006649 name: suspensory ligament of ovary def: "A fold of peritoneum that extends out from the ovary to the wall of the pelvis." [Wikipedia:Cooper%27s_ligaments_of_penis_of_ovary] comment: Some sources consider it a part of the broad ligament of uterus[2] while other sources just consider it a "termination" of the ligament.[3] +subset: human_subset +subset: mouse_subset synonym: "infundibulopelvic fold" EXACT [FMA:19822] synonym: "infundibulopelvic ligament" EXACT [FMA:19822] xref: EMAPA:19085 @@ -280238,6 +289501,8 @@ relationship: part_of UBERON:0002095 {source="FMA-modified"} ! mesentery id: UBERON:0006650 name: tunica vaginalis testis def: "The outer coelomic epithelial covering of the testis; a sac of serous tissue covering the testis and the epididymis within which the testis can move about; it covers the tunica albuginea." [MP:0013739] +subset: human_subset +subset: mouse_subset synonym: "lamina parietalis" RELATED [Wikipedia:Tunica_vaginalis] synonym: "lamina visceralis" RELATED [Wikipedia:Tunica_vaginalis] synonym: "processus vaginalis testis" RELATED [Wikipedia:Processus_vaginalis] @@ -280269,6 +289534,8 @@ id: UBERON:0006651 name: appendix testis def: "The appendix testis is a vestigial remnant of the Mullerian duct, present on the upper pole of the testis and attached to the tunica vaginalis. It is present about 90% of the time." [Wikipedia:Appendix_of_testis] comment: See also 'vesicular appendage of epoophoron'. TODO: check vesicular appendages +subset: human_subset +subset: mouse_subset synonym: "appendices testis" RELATED OMO:0003004 [Wikipedia:Appendix_of_testis] synonym: "appendix of testis" EXACT [FMA:19846] synonym: "appendix of the testis" RELATED [Wikipedia:Appendix_of_testis] @@ -280299,6 +289566,8 @@ property_value: external_definition "a cystlike remnant of the müllerian duct o [Term] id: UBERON:0006652 name: muscular layer of vagina +subset: human_subset +subset: mouse_subset synonym: "muscular coat of vagina" EXACT [FMA:19976] synonym: "tunica muscularis vaginae" EXACT OMO:0003011 [FMA:19976, FMA:TA] synonym: "vaginal muscularis" EXACT [] @@ -280316,6 +289585,8 @@ relationship: part_of UBERON:0000996 ! vagina id: UBERON:0006653 name: glans clitoris def: "Erectile tissue at the end of the clitoris, which is continuous with the intermediate part of the vestibulovaginal bulbs[BTO]. The clitoral glans (glans clitoridis) is an external portion of the clitoris[WP]." [BTO:0003117, Wikipedia:Clitoral_glans] +subset: human_subset +subset: mouse_subset synonym: "clitoris glans" EXACT [FMA:19999] synonym: "glans clitoridis" RELATED [Wikipedia:Clitoral_glans] synonym: "glans clitoris" RELATED [Wikipedia:Clitoral_glans] @@ -280339,6 +289610,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8c/Cl id: UBERON:0006654 name: perineal body def: "The perineal body (or central tendon of perineum) is a pyramidal fibromuscular mass in the middle line of the perineum at the junction between the urogenital triangle and the anal triangle. It is found in both males and females. In males, it is found between the bulb of penis and the anus; in females, is found between the vagina and anus, and about 1.25 cm in front of the latter. The perineal body is essential for the integrity of the pelvic floor, particularly in females. Its rupture during delivery leads to widening of the gap between the anterior free borders of levator ani muscle of both sides, thus predisposing the woman to prolapse of the uterus, rectum, or even the urinary bladder." [https://orcid.org/0000-0002-2825-0621, Wikipedia:Perineal_body] +subset: human_subset +subset: mouse_subset synonym: "central tendinous point" RELATED [Wikipedia:Perineal_body] synonym: "central tendinous point of the perineum" RELATED [Wikipedia:Perineal_body] synonym: "central tendon of perineum" EXACT [FMA:20274] @@ -280359,6 +289632,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/1795" xsd id: UBERON:0006655 name: septum of scrotum def: "An incomplete wall of connective tissue and nonstriated muscle (dartos fascia) dividing the scrotum into two sacs, each containing a testis." [http://www.medilexicon.com/medicaldictionary.php?t=81109] +subset: human_subset +subset: mouse_subset synonym: "scrotal septum" EXACT [FMA:20729] synonym: "septum scroti" EXACT OMO:0003011 [] xref: EMAPA:29745 @@ -280381,6 +289656,8 @@ id: UBERON:0006656 name: deep dorsal vein of penis def: "The deep dorsal vein of the penis lies beneath the deep fascia of the penis; it receives the blood from the glans penis and corpora cavernosa penis and courses backward in the middle line between the dorsal arteries; near the root of the penis it passes between the two parts of the suspensory ligament and then through an aperture between the arcuate pubic ligament and the transverse ligament of the pelvis, and divides into two branches, which enter the pudendal plexus. The deep vein also communicates below the symphysis pubis with the internal pudendal vein." [Wikipedia:Deep_dorsal_vein_of_the_penis] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:19219 xref: FMA:21354 xref: SCTID:55433007 @@ -280399,6 +289676,8 @@ relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac v id: UBERON:0006657 name: glenoid fossa def: "Anatomical cavity for the proximal articular surface of the proximal limb or fin element with the scapulocoracoid or equivalent structure." [PHENOSCAPE:ad] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cavitas glenoidalis" RELATED OMO:0003011 [Wikipedia:Glenoid_cavity] synonym: "cavitas glenoidalis scapulae" EXACT OMO:0003011 [FMA:23275, FMA:TA] @@ -280428,6 +289707,8 @@ property_value: taxon_notes "The glenoid fossa can be associated with the metapt id: UBERON:0006658 name: interphalangeal joint def: "A joint that connects one phalanx to another along a proximodistal axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "inter-phalangeal joint" EXACT [FMA:42765] synonym: "inter-phalanx joint" EXACT [] @@ -280447,6 +289728,8 @@ property_value: external_definition "Hinge joints between the phalanges of the h id: UBERON:0006659 name: cruciate ligament of knee def: "One of a pair of ligaments arranged like a letter X.[1] They occur in several joints of the body, such as the knee. In a fashion similar to the cords in a toy Jacob's ladder, the crossed ligaments stabilize the joint while allowing a very large range of motion[WP]." [Wikipedia:Cruciate_ligament] +subset: human_subset +subset: mouse_subset synonym: "cruciate ligament" BROAD [FMA:44611] synonym: "cruciform ligament" BROAD [Wikipedia:Cruciate_ligament] synonym: "intracapsular ligament" RELATED [FMA:44611] @@ -280461,6 +289744,8 @@ relationship: part_of UBERON:0001485 {source="FMA"} ! knee joint id: UBERON:0006660 name: muscular coat def: "A region of muscle in many organs in the vertebrate body, adjacent to the submucosa membrane. It is responsible for gut movement such as peristalsis." [Wikipedia:Muscular_layer] +subset: human_subset +subset: mouse_subset synonym: "muscular coat" RELATED [Wikipedia:Muscularis_externa] synonym: "muscular layer" EXACT [OBOL:automatic] synonym: "muscularis" RELATED [] @@ -280490,6 +289775,8 @@ property_value: taxon_notes "typically smooth muscle, but there may be exception id: UBERON:0006661 name: epicranial aponeurosis def: "The galea aponeurotica (epicranial aponeurosis, aponeurosis epicranialis) is a tough layer of dense fibrous tissue which covers the upper part of the cranium; behind, it is attached, in the interval between its union with the Occipitales, to the external occipital protuberance and highest nuchal lines of the occipital bone; in front, it forms a short and narrow prolongation between its union with the Frontales. On either side it gives origin to the Auriculares anterior and superior; in this situation it loses its aponeurotic character, and is continued over the temporal fascia to the zygomatic arch as a layer of laminated areolar tissue. It is closely connected to the integument by the firm, dense, fibro-fatty layer which forms the superficial fascia of the scalp: it is attached to the pericranium by loose cellular tissue, which allows the aponeurosis, carrying with it the integument to move through a considerable distance." [Wikipedia:Galea_aponeurotica] +subset: human_subset +subset: mouse_subset synonym: "aponeurosis epicranialis" EXACT OMO:0003011 [FMA:46768, FMA:TA] synonym: "aponeurosis of epicranius" EXACT [FMA:46768] synonym: "cranial aponeurosis" RELATED [Wikipedia:Galea_aponeurotica] @@ -280513,6 +289800,8 @@ id: UBERON:0006662 name: musculo-phrenic vein def: "Any of the veins that accompany the musculophrenic artery and drain blood from the upper abdominal wall, the lower intercostal spaces, and the diaphragm." [http://medical-dictionary.thefreedictionary.com/musculophrenic+vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "musculophrenic vein" EXACT [FMA:4732] xref: EMAPA:19222 xref: FMA:4732 @@ -280530,6 +289819,8 @@ id: UBERON:0006663 name: hemiazygos vein def: "The hemiazygos vein (vena azygos minor inferior) is a vein running superiorly in the lower thoracic region, just to the left side of the vertebral column." [Wikipedia:Hemiazygos_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "hemi-azygos vein" EXACT [FMA:4944] synonym: "hemiazygos" RELATED [Wikipedia:Hemiazygos_vein] synonym: "hemiazygos veins" RELATED [Wikipedia:Hemiazygos_vein] @@ -280555,6 +289846,8 @@ id: UBERON:0006664 name: greater palatine artery def: "The greater palatine artery is a terminal branch of the maxillary artery. It branches off of the maxillary artery in the pterygopalatine fossa and descends through the greater palatine foramen along with the greater palatine nerve and supplies the hard palate. It also anastomosis through the incisive canal with the sphenopalatine artery to supply the nasal cavity." [Wikipedia:Greater_palatine_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria palatina major" RELATED OMO:0003011 [Wikipedia:Greater_palatine_artery] synonym: "major palatine artery" EXACT [MA:0001993] xref: EMAPA:18754 @@ -280573,6 +289866,8 @@ id: UBERON:0006665 name: accessory hemiazygos vein def: "The accessory hemiazygos vein (vena azygos minor superior) is a vein on the left side of the vertebral column that generally drains the fifth through eighth intercostal spaces on the left side of the body[WP]." [Wikipedia:Accessory_hemiazygos_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "accessory hemi-azygos vein" EXACT [FMA:5011] synonym: "superior hemi-azygos vein" EXACT [FMA:5011] synonym: "vena azygos accessoria" EXACT [FMA:5011] @@ -280593,6 +289888,8 @@ id: UBERON:0006666 name: great cerebral vein def: "The great cerebral vein is one of the large blood vessels in the skull draining the cerebrum (brain)[WP,unvetted]." [Wikipedia:Great_cerebral_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "great cerebral vein" EXACT [FMA:50993] synonym: "great cerebral vein of Galen" EXACT [FMA:50993] synonym: "vein of Galen" EXACT [FMA:50993] @@ -280611,6 +289908,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0006667 name: pituitary fossa def: "Anatomical cavity that is part of the sella turcica and contains the pituitary gland." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "cavity of hypophyseal fossa" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "cavity of sella turcica" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "hypophyseal fossa" EXACT [FMA:54721] @@ -280628,6 +289927,8 @@ relationship: part_of UBERON:0003689 ! sella turcica id: UBERON:0006668 name: carotid canal def: "On the interior surface of the temporal bone, behind the rough surface of the apex, is the large circular aperture of the carotid canal, which ascends at first vertically, and then, making a bend, runs horizontally forward and medialward. It transmits into the cranium, the internal carotid artery, and the carotid plexus of nerves. Sympathetics to the head also pass through the carotid canal. They have several motor functions: raise the eyelid (superior tarsal muscle), dilate pupil, innervate sweat glands of face and scalp and constricts blood vessels in head[WP]." [Wikipedia:Carotid_canal] +subset: human_subset +subset: mouse_subset synonym: "canalis caroticus" RELATED OMO:0003011 [Wikipedia:Carotid_canal] xref: EMAPA:18707 xref: FMA:55805 @@ -280644,6 +289945,8 @@ id: UBERON:0006669 name: alveolar canal def: "The infratemporal surface of the maxilla is pierced about its center by the apertures of the alveolar canals, which transmit the posterior superior alveolar vessels and nerves[WP]." [Wikipedia:Alveolar_canals] comment: Desig pattern note: check design pattern +subset: human_subset +subset: mouse_subset synonym: "canales alveolares maxillae" RELATED OMO:0003011 [Wikipedia:Alveolar_canals] xref: EMAPA:25099 xref: FMA:57743 @@ -280658,6 +289961,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/71/Gr id: UBERON:0006670 name: central tendon of diaphragm def: "The three-lobed cloverleaf-shaped aponeurosis situated at the center of the diaphragm; the central tendon is fused with the fibrous pericardium that provides attachment for the muscle fibers." [MGI:csmith, MP:0012061] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "central tendon" EXACT [FMA:58279] synonym: "centrum tendineum" EXACT [FMA:58279] @@ -280682,6 +289987,8 @@ property_value: homology_notes "In mammals, the diaphragm muscle divides the tho id: UBERON:0006671 name: orbital fat pad def: "A fat pad that is part of a orbital region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "adipose body of the orbit" EXACT [PMID:11948952] synonym: "adipose tissue of ocular region" EXACT [PMID:29320711] synonym: "intraorbital fat pad" EXACT [FMA:59005] @@ -280703,6 +290010,8 @@ id: UBERON:0006672 name: incisive canal def: "One of several bony canals leading from the floor of the nasal cavity into the incisive fossa on the palatal surface of the maxilla; they convey the nasopalatine nerves and branches of the greater palatine arteries that anastomose with the septal branch of the sphenopalatine artery." [http://medical-dictionary.thefreedictionary.com/incisive+canal] comment: Design pattern notes: see also incisive duct and foramen +subset: human_subset +subset: mouse_subset synonym: "canales incisivi" EXACT OMO:0003011 [Wikipedia:Incisive_canals] synonym: "canalis incisivus" EXACT OMO:0003011 [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:19034 @@ -280718,6 +290027,8 @@ relationship: part_of UBERON:0003216 {source="EMAPA"} ! hard palate id: UBERON:0006673 name: mandibular canal def: "A canal within the mandible that contains the inferior alveolar nerve, inferior alveolar artery, and inferior alveolar vein. It runs obliquely downward and forward in the ramus, and then horizontally forward in the body, where it is placed under the alveoli and communicates with them by small openings." [Wikipedia:Mandibular_canal] +subset: human_subset +subset: mouse_subset synonym: "inferior alveolar canal" RELATED [EMAPA:19161] xref: EMAPA:19161 xref: FMA:59473 @@ -280738,6 +290049,8 @@ property_value: external_ontology_notes "TAO has mandibular sensory canal, which id: UBERON:0006674 name: inguinal ring def: "An entrance or exit of the inguinal canal." [Wikipedia:Inguinal_rings] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:65075 xref: SCTID:278830004 @@ -280750,6 +290063,8 @@ relationship: part_of UBERON:0006204 ! inguinal ligament id: UBERON:0006675 name: venous valve def: "A valve that is part of a vein." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "valve of vein" EXACT [FMA:68095] xref: FMA:68095 xref: MESH:D055422 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} @@ -280763,6 +290078,8 @@ relationship: part_of UBERON:0001638 ! vein id: UBERON:0006676 name: muscularis mucosa def: "A thin layer of smooth muscle found in most parts of the gastrointestinal tract, located outside the lamina propria mucosae and separating it from the submucosa[WP]." [Wikipedia:Muscularis_mucosae] +subset: human_subset +subset: mouse_subset synonym: "gut muscularis" EXACT [EMAPA:35385] synonym: "lamina muscularis mucosa" RELATED [BTO:0004839] synonym: "laminar muscularis mucosa" RELATED [Wikipedia:Muscularis_mucosae] @@ -280786,6 +290103,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/54/Gr id: UBERON:0006677 name: surface of epithelium def: "An anatomical boundary that adjacent_to a epithelium." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelium surface" EXACT [FMA:70997] xref: FMA:70997 is_a: UBERON:0036215 ! anatomical surface region @@ -280798,6 +290117,8 @@ relationship: part_of UBERON:0000483 ! epithelium id: UBERON:0006678 name: foramen secundum def: "A foramen in the septum secundum." [Wikipedia:Foramen_secundum] +subset: human_subset +subset: mouse_subset synonym: "foramen secundum" RELATED OMO:0003011 [Wikipedia:Foramen_secundum] synonym: "ostium secundum" EXACT OMO:0003011 [VHOG:0001471] xref: EHDAA2:0001828 @@ -280821,6 +290142,8 @@ id: UBERON:0006679 name: carina of trachea def: "A cartilaginous ridge within the trachea that runs anteroposteriorly between the two primary bronchi at the site of the tracheal bifurcation at the lower end of the trachea." [Wikipedia:Carina_of_trachea] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "bifurcation of the trachea" RELATED [Wikipedia:Carina_of_trachea] synonym: "carina" BROAD [FMA:7465] synonym: "carina (anatomy)" RELATED [Wikipedia:Carina_of_trachea] @@ -280849,6 +290172,8 @@ id: UBERON:0006680 name: trachealis def: "A smooth muscle tissue that bridges the gap between free ends of C-shaped cartilages at the posterior border of the trachea, adjacent to the esophagus. A primary function of the trachealis is to constrict the windpipe, allowing for higher velocity of air in the windpipe during coughing[WP, modified]." [Wikipedia:Trachealis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "tracheal muscle" EXACT [FMA:7466] synonym: "trachealis muscle" EXACT [FMA:7466] xref: EMAPA:19193 @@ -280863,6 +290188,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0006681 name: interthalamic adhesion def: "The medial surface of the thalamus constitutes the upper part of the lateral wall of the third ventricle, and is connected to the corresponding surface of the opposite thalamus by a flattened gray band, the Interthalamic adhesion (massa intermedia, middle commissure, gray commissure). In non-human mammals it is a large structure. In humans this mass averages about 1 cm in length in its antero-posterior diameter. It sometimes consists of two parts and occasionally is absent. The interthalamic adhesion is found in 70-80% of humans. It is present more often in females and larger than in males by an average of 53 percent. When absent in development, no noticeable deficit has been observed. It contains nerve cells and nerve fibers; a few of the latter may cross the middle line, but most of them pass toward the middle line and then curve lateralward on the same side." [Wikipedia:Interthalamic_adhesion] +subset: human_subset +subset: mouse_subset synonym: "interthalamic connection" EXACT [FMA:74869] synonym: "middle commissure" EXACT [FMA:74869] xref: BAMS:InTrM @@ -280877,6 +290204,8 @@ is_a: UBERON:0001020 ! nervous system commissure id: UBERON:0006682 name: hypoglossal canal def: "The hypoglossal canal is a bony canal in the occipital bone of the skull." [Wikipedia:Hypoglossal_canal] +subset: human_subset +subset: mouse_subset synonym: "anterior condylar canal" RELATED [EMAPA:19012] synonym: "canalis nervi hypoglossi" RELATED OMO:0003011 [Wikipedia:Hypoglossal_canal] synonym: "hyperglossal canal" RELATED [Wikipedia:Hypoglossal_canal] @@ -280895,6 +290224,8 @@ relationship: part_of UBERON:0001676 ! occipital bone id: UBERON:0006683 name: posterior fontanelle def: "A gap between bones in the skull at the junction of the sagittal suture and lambdoidal suture." [Wikipedia:Posterior_fontanelle] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fonticulus posterior" EXACT OMO:0003011 [] synonym: "occipital fontanelle" EXACT [] @@ -280913,6 +290244,8 @@ property_value: taxon_notes "In humans it generally closes in 6-8 weeks from bir id: UBERON:0006684 name: sphenoidal fontanelle comment: See also FMA:264720 +subset: human_subset +subset: mouse_subset synonym: "sphenoidal fontanelle" RELATED [Wikipedia:Pterion] xref: EMAPA:19229 xref: FMA:75441 @@ -280925,6 +290258,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6a/Pt id: UBERON:0006685 name: pharyngeal tubercle def: "On the lower surface of the basilar part of occipital bone, about 1 cm. in front of the foramen magnum, is the pharyngeal tubercle which gives attachment to the fibrous raphC) of the pharynx, also known as the pharyngeal raphe. This is the point of attachment for the superior pharyngeal constrictor muscle." [Wikipedia:Pharyngeal_tubercle] +subset: human_subset +subset: mouse_subset xref: EMAPA:19250 xref: FMA:75746 xref: Wikipedia:Pharyngeal_tubercle @@ -280935,6 +290270,8 @@ relationship: part_of UBERON:0001042 {source="EMAPA"} ! chordate pharynx id: UBERON:0006686 name: spinal vein def: "A vein that is part of a vertebral column." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "spinal branch" RELATED [FMA:76735] synonym: "vena spinalis" EXACT OMO:0003011 [FMA:76735, FMA:TA] xref: EMAPA:18255 @@ -280952,6 +290289,8 @@ id: UBERON:0006687 name: median sacral vein def: "The median sacral vein (or middle sacral veins) accompany the corresponding artery along the front of the sacrum, and join to form a single vein, which ends in the left common iliac vein; sometimes in the angle of junction of the two iliac veins." [Wikipedia:Median_sacral_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:26064 xref: FMA:77168 xref: Wikipedia:Median_sacral_vein @@ -280967,6 +290306,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0006688 name: sublingual caruncle def: "The sublingual caruncle is a site on either side of the frenulum linguae on the sublingual surface of the tongue. There it denotes the site at which the submandibular gland empties into the oral cavity." [Wikipedia:Sublingual_caruncle] +subset: human_subset +subset: mouse_subset synonym: "caruncula sublingualis" RELATED OMO:0003011 [Wikipedia:Sublingual_caruncle] xref: EMAPA:18961 xref: FMA:77273 @@ -280980,6 +290321,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/13/Gr id: UBERON:0006689 name: frenulum of tongue def: "A small fold of mucous membrane extending from the floor of the mouth to the midline of the underside of the tongue." [MGI:anna] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "frenulum" BROAD [] synonym: "frenulum linguae" EXACT OMO:0003011 [Wikipedia:Frenulum_of_tongue] @@ -281009,6 +290352,8 @@ id: UBERON:0006690 name: deep dorsal vein of clitoris def: "The deep dorsal vein of clitoris is a vein which drains to the vesical plexus." [Wikipedia:Deep_dorsal_vein_of_clitoris] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:19218 xref: FMA:77504 xref: SCTID:25834009 @@ -281025,6 +290370,8 @@ relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac v id: UBERON:0006691 name: tentorium cerebelli def: "The tentorium cerebelli or cerebellar tentorium is an extension of the dura mater that separates the cerebellum from the inferior portion of the occipital lobes." [Wikipedia:Tentorium_cerebelli] +subset: human_subset +subset: mouse_subset synonym: "cerebellar tentorium" EXACT [FMA:83966] xref: EMAPA:18210 xref: FMA:83966 @@ -281044,6 +290391,8 @@ property_value: external_definition "The tentorium cerebelli or cerebellar tento id: UBERON:0006692 name: vertebral canal def: "A conduit enclosed within the vertebral foramen of the vertebrae through which the spinal cord passes." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Spinal_canal] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "c. vertebralis" RELATED OMO:0003011 [Wikipedia:Spinal_canal] synonym: "foramen vertebrale" RELATED [AAO:0000693] @@ -281083,6 +290432,8 @@ is_obsolete: true id: UBERON:0006694 name: cerebellum vasculature def: "A vasculature that is part of a cerebellum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:268519 is_a: UBERON:0006876 ! vasculature of organ is_a: UBERON:0036303 ! vasculature of central nervous system @@ -281094,6 +290445,8 @@ relationship: part_of UBERON:0002037 ! cerebellum id: UBERON:0006695 name: mammillary axonal complex def: "The mammillary axonal complex is formed by the axons from the lateral, medial mammillary and the dorsal premammillary nuclei which share a branching pattern. Every neuron gives off one axonal stem that bifurcates into 2 branches. One of the branches is directed dorsally to the thalamus and another caudally to the midbrain[GO]." [GO:0061373] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002206 ! mammillary body @@ -281103,6 +290456,8 @@ name: mammillothalamic axonal tract alt_id: UBERON:0009642 def: "A fiber pathway that originates from neurons in the posterior hypothalamic region and projects to various nuclei of the anterior nuclear group of the thalamus. It is a composite structure that consists of the mammillothalamic tract of the hypothalamus and the mammillothalamic tract of the thalamus (Carpenter-1983). (from Brain Info.org)." [NLXANAT:1010016] comment: The mammillothalamic fasciculus arises from cells in both the medial and lateral nuclei of the mammillary body and by fibers that are directly continued from the fornix. The Mammillothalamic fasciculus then connects the mammillary body to the dorsal tegmental nuclei, the ventral tegmental nuclei, and the anterior thalamic nucleus [WP] +subset: human_subset +subset: mouse_subset synonym: "bundle of vicq d%27azyr" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "bundle of vicq d%e2%80%99azyr" RELATED [Wikipedia:Mammillothalamic_fasciculus] synonym: "fasciculus mammillothalamicus" EXACT OMO:0003011 [FMA:TA] @@ -281136,6 +290491,8 @@ property_value: external_definition "The mammillothalamic tract is the collectio id: UBERON:0006697 name: mammillotectal axonal tract def: "The mammillotectal tract is the collection of axons that connects the ventral diencephalon to the superior colliculus." [GO:0061375] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011591 ! tract of diencephalon relationship: extends_fibers_into UBERON:0001894 ! diencephalon relationship: extends_fibers_into UBERON:0001945 ! superior colliculus @@ -281147,6 +290504,8 @@ id: UBERON:0006698 name: mammillotegmental axonal tract alt_id: UBERON:0002725 def: "The mammillotegmental tract is the collection of axons that connects the ventral diencephalon to the tegmentum and pons." [GO:0061376] +subset: human_subset +subset: mouse_subset synonym: "fasciculus mamillotegmentalis" RELATED OMO:0003011 [NeuroNames:423] synonym: "Gudden tract" EXACT [FMA:62058] synonym: "mammillo-tegmental tract" RELATED [NeuroNames:423] @@ -281182,6 +290541,8 @@ relationship: part_of UBERON:0006695 ! mammillary axonal complex id: UBERON:0006699 name: foramen cecum of tongue def: "The median pit on the dorsum of the posterior part of the tongue, from which the limbs of a V-shaped furrow run forward and outward; the foramen cecum is the point of attachment of the thyroglossal duct and is formed during the embryological descent of the thyroid gland." [https://github.com/obophenotype/uberon/issues/281, MP:0013234] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "blind foramen of tongue" EXACT [MP:0013234] synonym: "cecal foramen of tongue" EXACT [MP:0013234] @@ -281210,6 +290571,8 @@ property_value: editor_note "consider merging with FC of thyroid" xsd:string id: UBERON:0006713 name: foramen cecum of frontal bone def: "The frontal crest of the frontal bone ends below in a small notch which is converted into a foramen, the foramen cecum, by articulation with the ethmoid. This foramen varies in size in different subjects, and is frequently impervious; when open, it transmits a vein from the nose to the superior sagittal sinus. This has clinical importance in that infections of the nose and nearby areas can be transmitted to the meninges and brain from what is known as the danger triangle of the face." [https://github.com/obophenotype/uberon/issues/281, Wikipedia:Foramen_cecum_(frontal_bone)] +subset: human_subset +subset: mouse_subset synonym: "f. caecum ossis frontalis" RELATED OMO:0003011 [Wikipedia:Foramen_cecum_(frontal_bone)] synonym: "foramen caecum ossis frontalis" RELATED OMO:0003011 [Wikipedia:Foramen_cecum_(frontal_bone)] xref: FMA:57443 @@ -281224,20 +290587,24 @@ property_value: editor_note "TODO - check if this is what the FMA ID really deno id: UBERON:0006714 name: tibiofibula def: "Paired, endochondral bones formed by the fusion of the tibia and fibula. They form the shanks, extending from the knees to the ankles." [AAO:Maglia_et_al_2007] +subset: human_subset +subset: mouse_subset synonym: "os cruris" RELATED [AAO:0000902] synonym: "tibia-fibula" EXACT [XAO:0003213] synonym: "tibiofibula" EXACT [] xref: AAO:0000902 xref: XAO:0003213 is_a: UBERON:0004251 ! hindlimb zeugopod bone -relationship: derived_from_ancestral_fusion_of UBERON:0000979 ! tibia -relationship: derived_from_ancestral_fusion_of UBERON:0001446 ! fibula +relationship: has_fused_element UBERON:0000979 ! tibia +relationship: has_fused_element UBERON:0001446 ! fibula relationship: part_of UBERON:0010720 {source="AAO"} ! hindlimb zeugopod skeleton [Term] id: UBERON:0006715 name: radio-ulna def: "Paired, long bones of endochondral origin formed by the fusion of the radius and ulna." [AAO:Maglia_et_al_2007] +subset: human_subset +subset: mouse_subset synonym: "radioulna" EXACT [XAO:0003209] synonym: "radius+ulna" EXACT [] synonym: "radius-ulna" EXACT [XAO:0003209] @@ -281248,15 +290615,17 @@ is_a: UBERON:0015002 ! radius-ulna endochondral element intersection_of: UBERON:0015002 ! radius-ulna endochondral element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue relationship: composed_primarily_of UBERON:0002481 ! bone tissue -relationship: derived_from_ancestral_fusion_of UBERON:0001423 ! radius bone -relationship: derived_from_ancestral_fusion_of UBERON:0001424 ! ulna relationship: develops_from UBERON:0010848 ! radius-ulna cartilage element +relationship: has_fused_element UBERON:0001423 ! radius bone +relationship: has_fused_element UBERON:0001424 ! ulna relationship: part_of UBERON:0010703 {source="VSAO"} ! forelimb zeugopod skeleton [Term] id: UBERON:0006716 name: mesopodium region def: "The third segment of the limb, including either the wrist segment (carpus) or the ankle segment (tarsus)." [https://orcid.org/0000-0002-6601-2165, MA:th, Wikipedia:Carpus_and_tarsus_of_land_vertebrates] +subset: human_subset +subset: mouse_subset synonym: "carpus/tarsus" EXACT [] synonym: "mesopod" RELATED [] synonym: "mesopodial limb segment" EXACT [MA:th] @@ -281276,6 +290645,8 @@ property_value: terminology_notes "Naming conventions for pod terms under discus id: UBERON:0006717 name: autopodial skeleton def: "The collection of all skeletal elements in an autopodium region." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "autopod skeleton" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "autopodial skeleton" EXACT [VSAO:0005019] synonym: "autopodium" RELATED [VSAO:0005019, VSAO:NI] @@ -281298,6 +290669,8 @@ id: UBERON:0006718 name: medial pterygoid muscle def: "The medial pterygoid is a pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to the medial pterygoid and attaches to the cranial base and the medial side of the mandibular angle." [MFMO:0000083] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "internal pterygoid" RELATED [Wikipedia:Medial_pterygoid_muscle] synonym: "internal pterygoid muscle" RELATED [] @@ -281332,6 +290705,8 @@ id: UBERON:0006719 name: lateral pterygoid muscle def: "Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, is innervated by the lateral pterygoid nerve branches, and attaches to the condylar process of the mandible and temporomandibular joint (TMJ) capsule, and the cranial base." [MFMO:0000074] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "external pterygoid muscle" EXACT [MFMO:0000074] synonym: "lateral pteregoid" EXACT [FEED:rd, Wikipedia:Lateral_pterygoid_muscle] @@ -281375,6 +290750,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/539" xsd: id: UBERON:0006720 name: pterygoid muscle subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "pterygoid" RELATED INCONSISTENT [EMAPA:25139] synonym: "pterygoideus" RELATED [] synonym: "pterygoideus muscle" RELATED [] @@ -281392,6 +290769,8 @@ property_value: taxon_notes "We use this class to group the medial and lateral p id: UBERON:0006721 name: alisphenoid bone def: "Either of the broad curved wing like expanses on each side of the sphenoid bone in adults; may exist independently in the young." [ISBN:0-683-40008-8, MGI:smb, MP:0003235] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ala major (os sphenoidale)" EXACT [FMA:52868] synonym: "ala major ossis sphenoidalis" RELATED OMO:0003011 [Wikipedia:Greater_wing_of_sphenoid_bone] @@ -281430,6 +290809,8 @@ property_value: taxon_notes "The alisphenoid in mammals is part cartilage bone, id: UBERON:0006722 name: manubrium of malleus def: "The handle of the malleus; the portion that extends downward, inward, and backward from the neck of the malleus; it is embedded throughout its length in the tympanic membrane." [http://www.mondofacto.com/facts/dictionary?manubrium+of+malleus] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "handle of malleus" RELATED [MA:0002985] synonym: "malleal manubrium" RELATED [MA:0002985] @@ -281453,6 +290834,8 @@ property_value: taxon_notes "Conical in shape, with the cone extending inwards ( id: UBERON:0006723 name: cochlear modiolus def: "The central cone shaped core of spongy bone about which turns the spiral canal." [ISBN:0-683-40008-8, MGI:anna, MP:0003309] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "cochlea modiolus" EXACT [FMA:61278] @@ -281479,6 +290862,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/16/Gr id: UBERON:0006724 name: osseus spiral lamina def: "The osseous spiral lamina is a bony shelf or ledge which projects from the modiolus into the interior of the canal, and, like the canal, takes two-and-three-quarter turns around the modiolus. It reaches about half-way toward the outer wall of the tube, and partially divides its cavity into two passages or scalae, of which the upper is named the scala vestibuli, while the lower is termed the scala tympani." [Wikipedia:Osseous_spiral_lamina] +subset: human_subset +subset: mouse_subset synonym: "lamina modioli cochleae" EXACT OMO:0003011 [FMA:77710, FMA:TA] synonym: "lamina of modiolus cochleae" EXACT [FMA:77710] synonym: "lamina of modiolus of cochlea" EXACT [FMA:77710] @@ -281502,6 +290887,8 @@ id: UBERON:0006725 name: spiral ligament alt_id: UBERON:0028186 def: "A spiral thickening of the fibrous lining of the cochlear wall. Spiral ligament secures the membranous cochlear duct to the bony spiral canal of the cochlea. Its spiral ligament fibrocytes function in conjunction with the stria vascularis to mediate cochlear ion homeostasis." [https://github.com/obophenotype/mouse-anatomy-ontology/issues/71, Wikipedia:Spiral_ligament] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ligamentum spirale ductus cochlearis" EXACT OMO:0003011 [Wikipedia:Spiral_ligament] synonym: "spiral cochlear ligament" EXACT OMO:0003011 [] @@ -281528,6 +290915,8 @@ id: UBERON:0006726 name: outer canthus def: "A corner of the outer (lateral) part of an eye." [http://orcid.org/0000-0002-6601-2165] comment: see also FMA:59321 +subset: human_subset +subset: mouse_subset synonym: "lateral angle of eye" RELATED [FMA:59321] synonym: "lateral canthus" RELATED [MA:0001264] synonym: "lateral canthus of eye" EXACT [FMA:59321] @@ -281553,6 +290942,8 @@ property_value: external_definition "The angle at the end of the palpebral fissu [Term] id: UBERON:0006727 name: liver left lateral lobe +subset: human_subset +subset: mouse_subset synonym: "classical left lobe of liver" RELATED [FMA:14501] synonym: "lateral segment of left lobe of liver" EXACT [FMA:14501] synonym: "lateral segment of liver" EXACT [FMA:14501] @@ -281570,6 +290961,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l [Term] id: UBERON:0006728 name: liver left medial lobe +subset: human_subset +subset: mouse_subset synonym: "medial segment of left lobe of liver" EXACT [FMA:14500] synonym: "medial segment of liver" EXACT [FMA:14500] synonym: "segmentum mediale (lobus hepatis sinister)" EXACT [FMA:14500] @@ -281586,6 +290979,8 @@ id: UBERON:0006729 name: liver perisinusoidal space def: "The extravascular space in the liver between the parenchymal cells and a sinusoid that contains the blood plasma." [ISBN:0-683-40008-8, MP:0008988] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "Disse's space" EXACT [FMA:63162] synonym: "hepatic perisinusoidal space" EXACT [FMA:63162] @@ -281608,6 +291003,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0006742 name: canthus def: "A canthus is a corner of the eye where the upper and lower eyelids meet. The bicanthal plane is the transversal plane linking both canthi and defines the upper boundary of the midface." [Wikipedia:Canthus] +subset: human_subset +subset: mouse_subset synonym: "angle of eye" RELATED [FMA:59222] synonym: "bicanthal" RELATED [Wikipedia:Canthus] synonym: "bicanthal plane" RELATED [Wikipedia:Canthus] @@ -281633,6 +291030,8 @@ property_value: has_relational_adjective "canthal" xsd:string [Term] id: UBERON:0006743 name: paleodentate of dentate nucleus +subset: human_subset +subset: mouse_subset synonym: "paleodentate of dentate nucleus" EXACT [BIRNLEX:1490] synonym: "paleodentate part of dentate nucleus" EXACT [FMA:72540] synonym: "paleodentate part of the dentate nucleus" RELATED [NeuroNames:685] @@ -281650,6 +291049,7 @@ relationship: part_of UBERON:0002132 ! dentate nucleus [Term] id: UBERON:0006749 name: superior parathyroid gland +subset: human_subset subset: organ_slim synonym: "parathyroid 4" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "parathyroid IV" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -281670,6 +291070,8 @@ property_value: taxon_notes "Mammals typically have four parathyroids, while oth [Term] id: UBERON:0006755 name: inferior parathyroid gland +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "inferior parathyroid" EXACT [EHDAA2:0000821] synonym: "parathyroid 3" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -281694,6 +291096,8 @@ id: UBERON:0006756 name: median lingual swelling def: "During the third week of embryological development there appears, immediately behind the ventral ends of the two halves of the mandibular arch, a rounded swelling named the tuberculum impar, which was described by His as undergoing enlargement to form the buccal part of the tongue. More recent researches, however, show that this part of the tongue is mainly, if not entirely, developed from a pair of lateral swellings which rise from the inner surface of the mandibular arch and meet in the middle line. The site of their meeting remains post-embryonically as the median sulcus of the tongue. The tuberculum impar is said to form the central part of the tongue immediately in front of the foramen cecum, but Hammar insists that it is purely a transitory structure and forms no part of the adult tongue[WP, Gray's]." [Wikipedia:Tuberculum_impar] comment: The thyroid initially develops caudal to the tuberculum impar . This embryonic swelling arises from the first pharyngeal arch and occurs midline on the floor of the developing pharynx, eventually helping form the tongue as the 2 lateral lingual swellings overgrow it. [http://emedicine.medscape.com/article/845125-overview] +subset: human_subset +subset: mouse_subset synonym: "median lingual swelling" EXACT [EHDAA2:0001081] synonym: "median tongue bud" EXACT [http://emedicine.medscape.com/article/845125-overview] synonym: "tuberculum impar" EXACT [] @@ -281715,6 +291119,8 @@ property_value: homology_notes "Most adult amphibians have a tongue, as do all k id: UBERON:0006757 name: lateral lingual swelling def: "During the third week there appears, immediately behind the ventral ends of the two halves of the mandibular arch, a rounded swelling named the tuberculum impar, which was described by His as undergoing enlargement to form the buccal part of the tongue. More recent researches, however, show that this part of the tongue is mainly, if not entirely, developed from a pair of lateral swellings (or distal tongue bud) which rise from the inner surface of the mandibular arch and meet in the middle line." [Wikipedia:Lateral_lingual_swelling] +subset: human_subset +subset: mouse_subset synonym: "lateral lingual prominence" RELATED [] synonym: "lateral swellings" RELATED [Wikipedia:Lateral_lingual_swelling] synonym: "tuberculum laterale" RELATED [Wikipedia:Lateral_lingual_swelling] @@ -281739,6 +291145,8 @@ def: "The edge of the cornea where it joins the sclera; the limbus is a common s comment: This location has parts such as blood vessels etc. See PMC2868485, http://www.ncbi.nlm.nih.gov/pubmed/2695343 subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "cornea limbus" EXACT [] @@ -281773,6 +291181,8 @@ id: UBERON:0006762 name: suspensory ligament of lens def: "The zonule of Zinn (Zinn's membrane, ciliary zonule) is a ring of fibrous strands connecting the ciliary body with the crystalline lens of the eye. The zonule of Zinn is split into two layers: a thin layer, which lines the hyaloid fossa, and a thicker layer, which is a collection of zonular fibers. Together, the fibers are known as the suspensory ligament of the lens[WP]. Modified or toughened vitreous that suspend the lens at the equator to the non-pigmented epithelium of the ciliary zone. In zebrafish, dorsal zonules are thickened as compared to ventral zonules. In both dorsal and ventral regions, these fibers delimit the vitreous body aqueous humor boundary[ZFA]." [Wikipedia:Zonule_of_Zinn] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "ciliary zonule" EXACT [FMA:58838] @@ -281803,6 +291213,8 @@ id: UBERON:0006763 name: epithelium of conjunctiva def: "Layer of nonkeratinized squamous epithelium lining the conjunctiva, overlying scleral tissue." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "conjunctiva epithelium" EXACT [FMA:62131] synonym: "conjunctival epithelium" EXACT [BTO:0005131] @@ -281822,6 +291234,8 @@ id: UBERON:0006764 name: anterior communicating artery def: "A blood vessel of the brain that connects the left and right anterior cerebral arteries. The anterior communicating artery connects the two anterior cerebral arteries across the commencement of the longitudinal fissure. Sometimes this vessel is wanting, the two arteries joining together to form a single trunk, which afterward divides; or it may be wholly, or partially, divided into two. Its length averages about 4 mm, but varies greatly. It gives off some of the anteromedial ganglionic vessels, but these are principally derived from the anterior cerebral artery. It is part of the cerebral arterial circle, also known as the circle of Willis." [Wikipedia:Anterior_communicating_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria communicans anterior" RELATED OMO:0003011 [Wikipedia:Anterior_communicating_artery] xref: EHDAA2:0000586 xref: EMAPA:18599 @@ -281844,6 +291258,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2e/Ci [Term] id: UBERON:0006765 name: left anterior vena cava +subset: mouse_subset synonym: "left superior vena cava" EXACT [EMAPA:18418] xref: EMAPA:18418 is_a: UBERON:0001638 ! vein @@ -281854,6 +291269,8 @@ property_value: taxon_notes "The mouse has both left and right anterior vena cav [Term] id: UBERON:0006766 name: right anterior vena cava +subset: human_subset +subset: mouse_subset synonym: "right superior vena cava" EXACT [EMAPA:18419] xref: EMAPA:18419 is_a: UBERON:0001638 ! vein @@ -281866,6 +291283,8 @@ id: UBERON:0006767 name: head of femur def: "The hemispheric articular surface at the upper extremity of the thigh bone[Stedman, 26th ed]. The femur head is the highest part of the thigh bone. It is supported by the neck of the femur. The head is globular and forms rather more than a hemisphere, is directed upward, medialward, and a little forward, the greater part of its convexity being above and in front. Its surface is smooth, coated with cartilage in the fresh state, except over an ovoid depression, the fovea capitis femoris, which is situated a little below and behind the center of the head, and gives attachment to the ligament of head of femur. If there is a fracture of the neck of the femur, the blood supply through the ligament becomes crucial. In orthopedic surgery, the head of the femur is important because it can undergo avascular necrosis and consequent osteochondritis dissecans. The head is removed in total hip replacement surgery [WP]." [MESH:A02.835.232.500.247.343, Wikipedia:Femur_head] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "acetabular head" EXACT [AAO:0000892] synonym: "capital femoral epiphysis" RELATED [http://medical-dictionary.thefreedictionary.com/capital+femoral+epiphysis] @@ -281894,6 +291313,8 @@ property_value: external_definition "Proximal head of the femur, which articulat [Term] id: UBERON:0006768 name: epiphyseal line +subset: human_subset +subset: mouse_subset synonym: "epiphysial junction" EXACT [FMA:9918] synonym: "line of bony union" EXACT [FMA:9918] xref: FMA:9918 @@ -281905,6 +291326,8 @@ relationship: part_of UBERON:0001438 ! metaphysis [Term] id: UBERON:0006770 name: apophysis +subset: human_subset +subset: mouse_subset xref: FMA:75428 xref: SCTID:65000005 is_a: UBERON:0004530 ! bony projection @@ -281914,6 +291337,8 @@ id: UBERON:0006771 name: long bone epiphyseal plate proliferative zone def: "Germinal layer of the epiphyseal plate where cells are actively dividing as well as producing extracellular matrix[MP]." [MP:0003662] comment: In this zone, chondrocytes undergo rapid mitosis, forming distinctive looking stacks[WP] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epiphyseal plate proliferative zone" EXACT [] synonym: "zone of proliferation" RELATED [MA:0002976] @@ -281927,6 +291352,8 @@ relationship: contains_process GO:0070278 ! extracellular matrix constituent sec id: UBERON:0006772 name: long bone epiphyseal plate hypertrophic zone def: "The layer of the epiphyseal plate of a long bone where chondrocytes mature and enlarge[MP]." [https://sourceforge.net/tracker/?func=detail&aid=3442184&group_id=76834&atid=1205376, MP:0000165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epiphyseal plate hypertrophic zone" EXACT [] synonym: "hypertrophic chondrocyte zone" RELATED [MP:0000165] @@ -281944,6 +291371,8 @@ property_value: external_ontology_notes "there is also MA:0002849 ! hypertrophic id: UBERON:0006773 name: long bone epiphyseal plate ossification zone def: "Layer of the epiphyseal plate where new bone matrix is deposited[MP]." [MP:0006399] +subset: human_subset +subset: mouse_subset synonym: "epiphyseal plate ossification zone" EXACT [] is_a: UBERON:0006775 ! zone of epiphyseal plate relationship: contains_process GO:0001503 ! ossification @@ -281951,6 +291380,8 @@ relationship: contains_process GO:0001503 ! ossification [Term] id: UBERON:0006775 name: zone of epiphyseal plate +subset: human_subset +subset: mouse_subset is_a: UBERON:0002418 ! cartilage tissue relationship: part_of UBERON:0002516 ! epiphyseal plate @@ -281958,6 +291389,8 @@ relationship: part_of UBERON:0002516 ! epiphyseal plate id: UBERON:0006776 name: annular epiphysis def: "Secondary growth centers occurring as rings at the periphery of the superior and inferior surfaces of the vertebral body." [http://medical-dictionary.thefreedictionary.com/epiphysis] +subset: human_subset +subset: mouse_subset synonym: "anular epiphysis" EXACT [FMA:75792] xref: FMA:75792 is_a: UBERON:0005913 ! zone of bone organ @@ -281969,6 +291402,8 @@ id: UBERON:0006777 name: tectal plate def: "Embryologic structure that is formed by two longitudinal eminences, one on each alar plate of the midbrain. These eminences become the superior colliculus and inferior colliculus ( Carpenter-1983 )]." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?type=a&ID=453] comment: The term "tectal plate" (or "quadrigeminal plate") is used to describe the junction of the gray and white matter in the embryo. (NeuroNames ancil-453) +subset: human_subset +subset: mouse_subset synonym: "lamina quadrigemina" EXACT OMO:0003011 [FMA:77488, FMA:TA] synonym: "quadrigeminal plate" EXACT [FMA:77488] xref: FMA:77488 @@ -281981,6 +291416,8 @@ relationship: part_of UBERON:0009616 ! presumptive midbrain id: UBERON:0006779 name: superficial white layer of superior colliculus def: "Superficial white matter layer of superior collilculus that consists mainly of axions from the optic nerve." [Wikipedia:Superior_colliculus#Neural_circuit] +subset: human_subset +subset: mouse_subset synonym: "lamina colliculi superioris iii" EXACT OMO:0003011 [FMA:71112, FMA:TA] synonym: "lamina III of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "layer III of superior colliculus" EXACT [FMA:71112] @@ -282008,6 +291445,8 @@ relationship: mutually_spatially_disjoint_with UBERON:0006780 {source="ABA"} ! z id: UBERON:0006780 name: zonal layer of superior colliculus def: "A thin layer consisting of small myelinated axons together with marginal and horizontal cells." [Wikipedia:Superior_colliculus#Neural_circuit] +subset: human_subset +subset: mouse_subset synonym: "lamina colliculi superioris I" EXACT OMO:0003011 [FMA:72406, FMA:TA] synonym: "lamina I of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "layer I of superior colliculus" EXACT [FMA:72406] @@ -282035,6 +291474,8 @@ property_value: editor_note "we follow FMA is making this gray matter, but this id: UBERON:0006782 name: stratum lemnisci of superior colliculus def: "Composite layer of the superior colliculus lying deep to the stratum opticum, that can be further subdivided into fiber and cell rich layers (Brodal, Neurological Anatomy, 2nd ed., 1981, pg 544)." [NLX:144110] +subset: human_subset +subset: mouse_subset synonym: "stratum lemnisci" BROAD [NLX:144110] xref: BAMS:StL xref: FMA:72408 @@ -282046,6 +291487,8 @@ is_a: UBERON:0006785 ! gray matter layer of superior colliculus id: UBERON:0006783 name: layer of superior colliculus def: "The microstructure of the optic tectum / superior colliculus varies across species. As a general rule, there is always a clear distinction between superficial layers, which receive input primarily from the visual system and show primarily visual responses, and deeper layers, which receive many types of input and project to numerous motor-related brain areas. The distinction between these two zones is so clear and consistent that some anatomists have suggested that they should be considered separate brain structures. In mammals, neuroanatomists conventionally identify seven layers[WP]." [Wikipedia:Superior_colliculus#Neural_circuit] +subset: human_subset +subset: mouse_subset synonym: "cytoarchitectural part of superior colliculus" EXACT [NLXANAT:1005033] synonym: "layer of optic tectum" EXACT SENSU [] synonym: "tectal layer" RELATED SENSU [] @@ -282063,6 +291506,8 @@ property_value: taxon_notes "The tectum in lampreys has more layers than the tec id: UBERON:0006785 name: gray matter layer of superior colliculus def: "A central nervous system gray matter layer that is part of a superior colliculus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "gray matter of superior colliculus" EXACT [] xref: FMA:77870 is_a: UBERON:0006783 ! layer of superior colliculus @@ -282075,6 +291520,8 @@ relationship: part_of UBERON:0001945 ! superior colliculus id: UBERON:0006786 name: white matter of superior colliculus def: "A central nervous system white matter layer that is part of a superior colliculus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "predominantly white regional part of superior colliculus" EXACT [BIRNLEX:1023] synonym: "white matter layer of superior colliculus" EXACT [FMA:83899] xref: BIRNLEX:1023 @@ -282088,6 +291535,8 @@ relationship: part_of UBERON:0001945 ! superior colliculus [Term] id: UBERON:0006787 name: middle white layer of superior colliculus +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "intermediate white layer" EXACT [FMA:71113] synonym: "intermediate white layer of superior colliculus" EXACT [FMA:71113] @@ -282119,6 +291568,8 @@ property_value: editor_note "grouping teleost assuming homology of superior coll [Term] id: UBERON:0006788 name: middle gray layer of superior colliculus +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "intermediate gray layer" EXACT [FMA:72409] synonym: "intermediate grey layer of superior colliculus" EXACT [FMA:72409] @@ -282148,6 +291599,8 @@ property_value: editor_note "grouping teleost assuming homology of superior coll [Term] id: UBERON:0006789 name: deep gray layer of superior colliculus +subset: human_subset +subset: mouse_subset synonym: "deep gray layer of the superior colliculus" RELATED [BAMS:DpG] synonym: "deep grey layer of superior colliculus" EXACT [FMA:72410] synonym: "deep grey layer of the superior colliculus" RELATED [BAMS:dgr] @@ -282174,6 +291627,8 @@ relationship: in_deep_part_of UBERON:0001945 ! superior colliculus id: UBERON:0006790 name: deep white layer of superior colliculus def: "Deep white matter layer of superior collilculus that consists entirely of fibers." [Wikipedia:Superior_colliculus#Neural_circuit] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "deep white layer of the superior colliculus" RELATED [BAMS:DpWh, BAMS:dw] synonym: "deep white zone" RELATED [TAO:0000494] @@ -282205,6 +291660,8 @@ property_value: editor_note "grouping teleost assuming homology of superior coll id: UBERON:0006791 name: superficial layer of superior colliculus def: "The outermost layer of the superior colliculus." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "superficial gray and white zone" EXACT [ZFA:0000686] synonym: "superficial grey and white zone" RELATED [TAO:0000686] synonym: "superficial grey and white zones" RELATED OMO:0003004 [TAO:0000686] @@ -282223,6 +291680,8 @@ property_value: editor_note "grouping teleost assuming homology of superior coll id: UBERON:0006792 name: intermediate layer of superior colliculus def: "A layer of superior colliculus that lies between the superficial layer and the deep layer." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "central zone" RELATED [TAO:0000327] synonym: "central zone of the optic tectum" EXACT [ZFA:0000327] synonym: "superior colliculus, central layer" RELATED [] @@ -282244,6 +291703,8 @@ property_value: editor_note "grouping teleost assuming homology of superior coll id: UBERON:0006793 name: deep layer of superior colliculus def: "The innermost layer of the superior colliculus." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "superior colliculus, deep layer" RELATED [BAMS:SCD] xref: BAMS:SCD xref: BM:MB-Tec-SCD @@ -282259,6 +291720,8 @@ id: UBERON:0006794 name: visual processing part of nervous system comment: This grouping class is primarily to accommodate GO subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "optic lobe" RELATED [GAID:1233] xref: GAID:1233 is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision @@ -282281,6 +291744,8 @@ property_value: editor_note "this term should be ceded to the arthropod anatomy id: UBERON:0006796 name: cephalopod optic lobe def: "Large lobes of the brain associated with the eyes. In octopods and some squids the optic lobes may be separated from the rest of the brain by an optic stalk of varying length. In Octopus the optic lobes contain 92 million cells compared with only 42 million in the main central mass of the brain (J. Young, 1963) ." [http://tolweb.org/accessory/Cephalopoda_Glossary?acc_id=587] +subset: human_subset +subset: mouse_subset synonym: "optic lobe" RELATED SENSU [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006794 ! visual processing part of nervous system @@ -282290,6 +291755,8 @@ relationship: part_of UBERON:0000955 ! brain id: UBERON:0006798 name: efferent nerve def: "A nerve that transmits nerve impulses from the central nervous system to effectors such as muscles or glands." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "motor nerve" RELATED [] synonym: "nervus efferente" EXACT OMO:0003011 [] synonym: "nervus motorius" RELATED OMO:0003011 [FMA:5867] @@ -282306,6 +291773,8 @@ relationship: has_part CL:0000527 {source="AEO"} ! efferent neuron id: UBERON:0006799 name: glandular epithelium def: "An epithelium that is composed primarily of secretory cells." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: BTO:0002991 xref: NCIT:C43370 xref: NCIT:C45715 @@ -282323,6 +291792,8 @@ id: UBERON:0006800 name: anatomical line def: "Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface." [http://orcid.org/0000-0001-9114-8737] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: upper_level xref: AAO:0010267 xref: AEO:0000008 @@ -282345,6 +291816,8 @@ id: UBERON:0006801 name: proximal head of humerus alt_id: UBERON:3000835 def: "Hemispherical structure on proximal epiphysis of humerus that articulates with glenoid cavity[WP,modified]." [Wikipedia:Upper_extremity_of_humerus#Humeral_head] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "caput humeri" RELATED [AAO:0000835, Wikipedia:Upper_extremity_of_humerus#Humeral_head] synonym: "head of humerus" EXACT [FMA:13304] @@ -282368,6 +291841,8 @@ property_value: external_definition "Hemispherical ball on the proximal end of t id: UBERON:0006802 name: acetabular rim def: "A prominent unever rim that bounds the acetabulum, serving as the attachment for the acetabular labrum, which reduces its opening, and deepens the surface for formation of the hip joint." [Wikipedia:Acetabulum#Structure] +subset: human_subset +subset: mouse_subset synonym: "acetabular margin" RELATED [] xref: FMA:16941 is_a: UBERON:0004120 ! mesoderm-derived structure @@ -282378,6 +291853,8 @@ relationship: part_of UBERON:0001269 ! acetabular part of hip bone id: UBERON:0006803 name: obturator foramen def: "The obturator foramen is the hole created by the ischium and pubis bones of the pelvis through which nerves and muscles pass." [Wikipedia:Obturator_foramen] +subset: human_subset +subset: mouse_subset synonym: "foramen obturatorium" EXACT OMO:0003011 [FMA:16999] synonym: "foramen obturatum" RELATED OMO:0003011 [Wikipedia:Obturator_foramen] xref: AAO:0000863 @@ -282399,6 +291876,8 @@ property_value: external_definition "Small opening for the passage of the obtura id: UBERON:0006804 name: reticular tissue def: "Loose connective tissue which consists of an irregular network of cells and reticular fibers and is spatially associated with myeloid and lymphoid cells. Examples: stroma of bone marrow, stroma of spleen, stroma of lymph node.[FMA]." [FMA:20116, Wikipedia:Reticular_connective_tissue] +subset: human_subset +subset: mouse_subset synonym: "reticular connective tissue" EXACT [FMA:20116] synonym: "textus connectivus reticularis" EXACT OMO:0003011 [FMA:20116] xref: AAO:0000542 @@ -282418,6 +291897,8 @@ id: UBERON:0006805 name: sternal end of clavicle def: "Medial end of the clavicle, which usually lies on the ventral side of the epicoracoid cartilage, just posterior to the epicoracoid bridge." [AAO:0000812] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "extremitas medialis" RELATED [AAO:0000812] synonym: "extremitas sternalis (clavicula)" EXACT [FMA:23297] synonym: "extremitas sternalis claviculae" EXACT OMO:0003011 [FMA:23297, FMA:TA] @@ -282435,6 +291916,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0006806 name: entepicondyle of humerus def: "A bony projection on the distal epiphysis of the humerus that is the attachment site for the flexor muscles of the manus. This condyle faces posteriorly (for sprawling tetrapods) or medially (for erect tetrapods)." [http://palaeos.com/vertebrates/glossary/glossaryE.html, PHENOSCAPE:ad] +subset: human_subset +subset: mouse_subset synonym: "e. medialis humeri" RELATED OMO:0003011 [Wikipedia:Medial_epicondyle_of_the_humerus] synonym: "elbow pit" RELATED [Wikipedia:Medial_epicondyle_of_the_humerus] synonym: "entepicondyle" EXACT [PHENOSCAPE:pm] @@ -282460,6 +291943,8 @@ property_value: has_relational_adjective "entepicondylar" xsd:string id: UBERON:0006807 name: ectepicondyle of humerus def: "A bony projection on the distal epiphysis of the humerus that is the attachment site for the extensor muscles of the distal parts of the forelimb. In humans, this is known as the lateral epicondyle, but the position varies across tetrapods." [http://palaeos.com/vertebrates/glossary/glossaryE.html, https://github.com/obophenotype/uberon/issues/40, PHENOSCAPE:ad, PMID:15064415] +subset: human_subset +subset: mouse_subset synonym: "dorsal epicondyle of humerus" RELATED [NCBITaxon:8782, Wikipedia:Lateral_epicondyle_of_the_humerus] synonym: "dorsal epicondyle of the humerus" RELATED SENSU [Wikipedia:Lateral_epicondyle_of_the_humerus] synonym: "e. lateralis humeri" RELATED OMO:0003011 [Wikipedia:Lateral_epicondyle_of_the_humerus] @@ -282494,6 +291979,8 @@ consider: FMA:37374 id: UBERON:0006810 name: olecranon def: "The olecranon is a large, thick, curved bony eminence of the forearm that projects behind the elbow. It is situated at the upper (proximal) end of the ulna, one of the two bones in the forearm. When the hand faces forward the olecranon faces towards the back (posteriorly). It is bent forward at the summit so as to present a prominent lip which is received into the olecranon fossa of the humerus in extension of the forearm. Its base is contracted where it joins the body and the narrowest part of the upper end of the ulna. Its posterior surface, directed backward, is triangular, smooth, subcutaneous, and covered by a bursa. Its superior surface is of quadrilateral form, marked behind by a rough impression for the insertion of the Triceps brachii; and in front, near the margin, by a slight transverse groove for the attachment of part of the posterior ligament of the elbow-joint. Its anterior surface is smooth, concave, and forms the upper part of the semilunar notch. Its borders present continuations of the groove on the margin of the superior surface; they serve for the attachment of ligaments, viz. , the back part of the ulnar collateral ligament medially, and the posterior ligament laterally. From the medial border a part of the Flexor carpi ulnaris arises; while to the lateral border the anconeus muscle is attached." [Wikipedia:Olecranon] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "olecranon process" RELATED [Wikipedia:Olecranon] synonym: "olecranon process of ulna" EXACT [Wikipedia:Olecranon] @@ -282517,6 +292004,8 @@ id: UBERON:0006811 name: occipital condyle def: "The occipital condyles are undersurface facets of the occipital bone in vertebrates, which function in articulation with the superior facets of the atlas vertebra. The condyles are oval or reniform (kidney-shaped) in shape, and their anterior extremities, directed forward and medialward, are closer together than their posterior, and encroach on the basilar portion of the bone; the posterior extremities extend back to the level of the middle of the foramen magnum. The articular surfaces of the condyles are convex from before backward and from side to side, and look downward and lateralward. To their margins are attached the capsules of the atlantoC6ccipital articulations, and on the medial side of each is a rough impression or tubercle for the alar ligament. At the base of either condyle the bone is tunnelled by a short canal, the hypoglossal canal." [Wikipedia:Exoccipital_condyle, Wikipedia:Occipital_condyle] comment: birds have a single occipital condyle, mammals have two[WP] +subset: human_subset +subset: mouse_subset synonym: "condylus occipitalis" RELATED OMO:0003011 [Wikipedia:Occipital_condyle] synonym: "exoccipital condyle" RELATED [Wikipedia:Exoccipital_condyle] xref: AAO:0000330 @@ -282530,6 +292019,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/88/Gr id: UBERON:0006812 name: mental foramen def: "The mental foramen is one of two holes ('foramina') located on the anterior surface of the mandible. It permits passage of the mental nerve and vessels. The mental foramen descends slightly in edentulous individuals." [Wikipedia:Mental_foramen] +subset: human_subset +subset: mouse_subset synonym: "foramen mentale" RELATED OMO:0003011 [Wikipedia:Mental_foramen] synonym: "foramen mentalis" RELATED [Wikipedia:Mental_foramen] synonym: "mental foramina" EXACT OMO:0003004 [OBOL:automatic] @@ -282551,6 +292042,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Gr id: UBERON:0006813 name: nasal skeleton def: "Structural framework that provides support to the nasal sacs and ducts." [AAO:0000320] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "skeleton of nose" EXACT [FMA:60116] xref: AAO:0000320 @@ -282569,6 +292062,8 @@ relationship: skeleton_of UBERON:0000004 ! nose id: UBERON:0006815 name: areolar connective tissue def: "Loose connective tissue located at the outer and inner layers of organs. Examples: submucosal connective tissue, tunica adventitia of artery, papillary dermis, superficial fascia of dorsum of hand." [FMA:63897] +subset: human_subset +subset: mouse_subset synonym: "areolar tissue" RELATED [] synonym: "loose areolar connective tissue" EXACT [FMA:63897] synonym: "loose connective tissue" RELATED [AAO:0000027] @@ -282587,6 +292082,8 @@ property_value: function_notes "cushions body organs" xsd:string {source="AAO"} id: UBERON:0006820 name: body of sternum def: "The middle and longest portion of the sternum, lying between the manubrium superiorly and the xiphoid process inferiorly; it considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end." [MP:0012512, Wikipedia:Body_of_sternum] +subset: human_subset +subset: mouse_subset synonym: "body of the sternum" RELATED [Wikipedia:Body_of_sternum] synonym: "corpus sterni" RELATED OMO:0003011 [Wikipedia:Body_of_sternum] synonym: "gladiolus" BROAD [] @@ -282608,6 +292105,8 @@ property_value: external_ontology_notes "AAO defines as 'Proximal portion of the [Term] id: UBERON:0006821 name: cutaneous muscle +subset: human_subset +subset: mouse_subset xref: AAO:0000119 xref: EMAPA:37500 {source="MA:th"} xref: FMA:74996 @@ -282620,6 +292119,8 @@ relationship: part_of UBERON:0001774 ! skeletal muscle of trunk id: UBERON:0006822 name: proximal epiphysis of ulna def: "The head of ulna presents an articular surface, part of which, of an oval or semilunar form, is directed downward, and articulates with the upper surface of the triangular articular disk which separates it from the wrist-joint; the remaining portion, directed lateralward, is narrow, convex, and received into the ulnar notch of the radius." [Wikipedia:Head_of_ulna] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "caput ulnae" EXACT OMO:0003011 [FMA:33751, FMA:TA] synonym: "caput ulnae" RELATED OMO:0003011 [Wikipedia:Head_of_ulna] @@ -282640,6 +292141,8 @@ relationship: part_of UBERON:0001424 ! ulna id: UBERON:0006828 name: trabecula carnea of atrium def: "The supporting bundles of muscular fibers lining the walls of the atria[MP]." [MP:0010581] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002511 ! trabecula carnea intersection_of: UBERON:0002511 ! trabecula carnea intersection_of: part_of UBERON:0002081 ! cardiac atrium @@ -282649,6 +292152,7 @@ property_value: editor_note "Not present in any AO. Note that WP states that tra [Term] id: UBERON:0006829 name: remnant of left anterior vena cava +subset: mouse_subset xref: Wikipedia:Persistent_left_superior_vena_cava is_a: UBERON:0003498 ! heart blood vessel is_a: UBERON:0005194 ! thoracic vein @@ -282659,6 +292163,8 @@ property_value: taxon_notes "The mouse has both left and right anterior vena cav [Term] id: UBERON:0006831 name: pre-tracheal muscle +subset: human_subset +subset: mouse_subset synonym: "pretracheal muscle" EXACT [MA:0001798] xref: EMAPA:19269 xref: MA:0001798 @@ -282680,6 +292186,8 @@ relationship: part_of UBERON:0003127 ! open tracheal system trachea id: UBERON:0006833 name: lumen of trachea def: "An anatomical space that surrounded_by a trachea." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lumen of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "tracheal lumen" EXACT [FMA:7469] xref: FMA:7469 @@ -282695,6 +292203,8 @@ id: UBERON:0006834 name: uterus or analog def: "A subdivision of a the reproductive tract in a female organism that is the site of embryo development." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "uterus" BROAD SENSU [FBbt:00004924] xref: FBbt:00004924 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: TADS:0000421 @@ -282720,6 +292230,8 @@ consider: TADS:0000415 id: UBERON:0006836 name: medial tibial tarsal bone def: "Endochondral tarsal bone that is medially located and between the intermedium and centralia." [VSAO:0005048] +subset: human_subset +subset: mouse_subset synonym: "tibiale" RELATED [AAO:0000912, MA:0001350] xref: AAO:0000912 xref: EMAPA:36179 @@ -282733,6 +292245,8 @@ id: UBERON:0006837 name: tegmen tympani def: "The Tegmental Wall or Roof (paries tegmentalis) is formed by a thin plate of bone, the tegmen tympani, which separates the cranial and tympanic cavities. It is situated on the anterior surface of the petrous portion of the temporal bone close to its angle of junction with the squama temporalis; it is prolonged backward so as to roof in the tympanic antrum, and forward to cover in the semicanal for the Tensor tympani muscle. Its lateral edge corresponds with the remains of the petrosquamous suture[Grays] ." [http://education.yahoo.com/reference/gray/subjects/subject/230] subset: dubious_grouping +subset: human_subset +subset: mouse_subset synonym: "crista parotica" RELATED HOMOLOGY [AAO:0000116] synonym: "crista prootica" RELATED HOMOLOGY [AAO:0000116, http://www.palaeos.com/Vertebrates/Lists/Glossary/GlossaryCr.html] synonym: "paries tegmentalis cavi tympani" EXACT OMO:0003011 [FMA:56002, FMA:TA] @@ -282752,6 +292266,8 @@ id: UBERON:0006838 name: ventral ramus of spinal nerve def: "Branch of spinal nerve that innervates the hypaxial muscles." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Spinal_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "anterior branch of spinal nerve" RELATED [FMA:5982] synonym: "anterior primary ramus of spinal nerve" EXACT [FMA:5982] synonym: "anterior ramus of spinal nerve" EXACT [FMA:5982] @@ -282777,6 +292293,8 @@ id: UBERON:0006839 name: dorsal ramus of spinal nerve def: "Branch of spinal nerve that innervates the epaxial muscles." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Spinal_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "dorsal ramus" BROAD [FMA:5983] synonym: "posterior branch of spinal nerve" RELATED [FMA:5983] synonym: "posterior primary ramus" EXACT [FMA:5983] @@ -282799,6 +292317,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b1/Gr id: UBERON:0006840 name: nucleus of lateral lemniscus def: "Groups of cells situated largely within the fiber bundles of the lateral lemniscus. Two nuclei are usually distinguished: a ventral group and a dorsal group (Brodal, Neurological Anatomy, 3rd ed., 1981, pg. 619)." [NLX:69745] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "lateral lemniscus nuclei" EXACT [ZFA:0000380] synonym: "lateral lemniscus nucleus" EXACT [TAO:0000380] @@ -282827,6 +292347,8 @@ id: UBERON:0006841 name: central vein of liver def: "Vein that is central to a lobule in the liver." [ZFA:0005168] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "central vein" BROAD [ZFA:0005168] synonym: "terminal branch of hepatic vein" EXACT [FMA:17544] @@ -282848,6 +292370,8 @@ id: UBERON:0006842 name: lymphatic capillary def: "Microvessel of the lymphatic system lined with a single layer of overlapping endothelial cells. Joins to form the lymphatic vessels." [ZFA:0005252] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "lymph capillary" EXACT [FMA:5028] xref: FMA:5028 @@ -282866,6 +292390,8 @@ property_value: external_definition "Microvessel of the lymphatic system lined w id: UBERON:0006843 name: root of cranial nerve def: "The initial segment of a cranial nerve, leaving the central nervous system." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "cranial nerve root" EXACT [FMA:52609] synonym: "cranial neural root" EXACT [FMA:52609] @@ -282887,6 +292413,8 @@ property_value: editor_note "recommend asserting under this class rather than re id: UBERON:0006844 name: cusp of tooth def: "A raised area of the biting surface of a tooth." [ncithesaurus:Tooth_Cusp] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "cusp" BROAD [] synonym: "tooth cone" RELATED [ISBN:0073040584] @@ -282909,6 +292437,8 @@ id: UBERON:0006845 name: abductor muscle def: "A muscle that moves a body part away from the sagittal plane/midline of the body[ZFA]. For example, the abductor muscles of the legs spread the legs away from the midline and away from one another. An abductor muscle opposes an adductor muscle[BTO]." [ZFA:0005269] subset: grouping_class +subset: human_subset +subset: mouse_subset xref: BTO:0004642 xref: FMA:74997 xref: TAO:0002135 @@ -282924,6 +292454,8 @@ name: surface groove def: "A furrow or an incomplete tube." [AEO:0000161, AEO:JB, https://github.com/obophenotype/human-developmental-anatomy-ontology/issues/4] comment: Surface groove is modelled as immaterial - see https://github.com/obophenotype/uberon/issues/2667 for discussion subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "groove" RELATED [AEO:0000161] xref: AEO:0000161 xref: EHDAA2_RETIRED:0003161 @@ -282935,6 +292467,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2667" xsd id: UBERON:0006847 name: cerebellar commissure def: "A nervous system commissure that connects a left hemisphere of cerebellum and connects a right hemisphere of cerebellum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "commissura cerebelli" EXACT [ZFA:0000490] synonym: "commissure of cerebellum" EXACT [] @@ -282956,6 +292490,8 @@ relationship: part_of UBERON:0002317 ! white matter of cerebellum [Term] id: UBERON:0006848 name: posterior pretectal nucleus +subset: human_subset +subset: mouse_subset xref: BAMS:PPT xref: BAMS:PTP xref: EMAPA:37922 {source="MA:th"} @@ -282977,6 +292513,8 @@ alt_id: UBERON:0010904 def: "Endochondral bone that is dorsoventrally compressed and provides attachment site for muscles of the pectoral appendage." [https://github.com/obophenotype/uberon/issues/204, https://github.com/obophenotype/uberon/issues/339, VSAO:0000157] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim synonym: "scapula bone" RELATED [BTO:0001218] @@ -283034,6 +292572,8 @@ is_obsolete: true id: UBERON:0006851 name: renal cortex peritubular capillary def: "A peritubular capillary that is part of a cortex of kidney." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "kidney cortex peritubular capillary" EXACT [MA:0002590] xref: EMAPA:37488 {source="MA:th"} xref: MA:0002590 @@ -283053,6 +292593,8 @@ replaced_by: UBERON:0005751 id: UBERON:0006853 name: renal cortex tubule def: "A region of nephron tubule that is part of a cortex of kidney." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cortical tubule" RELATED [MA:0002609] synonym: "kidney cortex tubule" EXACT [MA:0002609] xref: EMAPA:18976 @@ -283065,6 +292607,8 @@ relationship: part_of UBERON:0001225 {source="MA"} ! cortex of kidney [Term] id: UBERON:0006854 name: distal straight tubule postmacula segment +subset: human_subset +subset: mouse_subset synonym: "cortical thick ascending limb of Henle's loop" EXACT [MA:th] synonym: "kidney cortex loop of Henle ascending limb thick segment" EXACT [MA:th] synonym: "renal cortex loop of Henle ascending limb thick segment" EXACT [MA:th] @@ -283080,6 +292624,8 @@ property_value: term_tracker_item "https://sourceforge.net/tracker/?func=detail& id: UBERON:0006855 name: muscular coat of ureter def: "A muscular coat that is part of a ureter." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscular coat of ureter" EXACT [FMA:15893] synonym: "muscular layer of ureter" EXACT [FMA:15893] synonym: "muscularis of ureter" EXACT [FMA:15893] @@ -283100,6 +292646,8 @@ relationship: part_of UBERON:0009916 {source="FMA"} ! wall of ureter id: UBERON:0006856 name: interrenal gland def: "Structures in fishes homologous to the cortical tissue of the mammalian adrenal gland; they are in close proximity to or imbedded in the head kidney." [BTO:0000808, DOI:10.1242/dev.00427] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "interrenal" RELATED [http://dev.biologists.org/content/130/10/2107.full] synonym: "interrenal bodies" RELATED [] @@ -283126,6 +292674,8 @@ property_value: homology_notes "All craniates have groups of cells homologous to [Term] id: UBERON:0006857 name: interrenal primordium +subset: human_subset +subset: mouse_subset xref: TAO:0001346 xref: ZFA:0001346 is_a: UBERON:0001048 {source="Obol"} ! primordium @@ -283141,6 +292691,8 @@ id: UBERON:0006858 name: adrenal/interrenal gland def: "This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells[GO]." [GO:0030325] subset: homology_grouping +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "adrenal - interrenal gland" RELATED [VHOG:0001141] synonym: "adrenal gland - interrenal gland" EXACT [VHOG:0001141] @@ -283201,6 +292753,8 @@ property_value: taxon_notes "Found in Actinopterygii. Often lacking in bottom fi id: UBERON:0006861 name: diaphysis proper def: "Subdivision of long bone which forms the part of the bone between two metaphyses. Note that the diaphysis includes the metaphyses, but the diaphysis proper excludes these." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "body proper of long bone" EXACT [FMA:32688] synonym: "long bone diaphysis" RELATED INCONSISTENT [MA:0002803] @@ -283217,6 +292771,8 @@ property_value: external_ontology_notes "The MA class is associated with EMAPA:3 id: UBERON:0006862 name: diaphysis of femur def: "A diaphysis that is part of a femur[Automatically generated definition]." [OBOL:automatic, Wikipedia:Body_of_femur] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "body of femur" EXACT [FMA:32847] synonym: "corpus femoris" EXACT OMO:0003011 [FMA:32847, FMA:TA] @@ -283241,6 +292797,8 @@ property_value: external_definition "The body of the femur (or shaft), almost cy id: UBERON:0006863 name: proximal metaphysis of femur def: "A proximal metaphysis that is part of a femur." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:32878 is_a: UBERON:0004378 ! proximal metaphysis @@ -283254,6 +292812,8 @@ relationship: part_of UBERON:0006862 {source="https://github.com/obophenotype/ub id: UBERON:0006864 name: distal metaphysis of femur def: "A distal metaphysis that is part of a femur." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:32881 is_a: UBERON:0004377 ! distal metaphysis @@ -283267,6 +292827,8 @@ relationship: part_of UBERON:0006862 {source="https://github.com/obophenotype/ub id: UBERON:0006865 name: metaphysis of femur def: "A metaphysis that is part of a femur." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "femoral metaphysis" EXACT [FMA:32875] xref: EMAPA:37540 {source="MA:th"} @@ -283283,6 +292845,8 @@ relationship: part_of UBERON:0006862 {is_inferred="true", source="https://github id: UBERON:0006866 name: terminal part of digestive tract def: "The distalmost portion of the digestive tract, derived from the hindgut, and terminating with the anus." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "rectal part of digestive tract" RELATED [] synonym: "rectum" NARROW [FBbt:00005756] synonym: "terminal section of digestive tract" RELATED [] @@ -283297,6 +292861,8 @@ property_value: curator_notes "this class is the superclass of 'rectum', which i id: UBERON:0006867 name: anal part of perineum def: "The anal triangle is the posterior part of the perineum. It contains the anal canal. [WP,unvetted]." [Wikipedia:Anal_triangle] +subset: human_subset +subset: mouse_subset synonym: "anal region" BROAD [FMA:20347] synonym: "anal triangle" EXACT [FMA:20347] synonym: "regio analis" RELATED OMO:0003011 [Wikipedia:Anal_triangle] @@ -283314,6 +292880,8 @@ id: UBERON:0006868 name: seminal fluid secreting gland def: "A gland that secretes a seminal fluid." [OBOL:automatic] subset: grouping_class +subset: human_subset +subset: mouse_subset subset: organ_slim xref: FBbt:00004958 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: WBbt:0006870 @@ -283365,6 +292933,8 @@ id: UBERON:0006871 name: embryonic footplate alt_id: UBERON:0004343 def: "The distal elements of the developing limb of vertebrates that will give rise to the pes (foot)." [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2218, MGI:csmith, MP:0004576, UBERON:cjm] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal part of hindlimb bud" RELATED [EMAPA:17249] synonym: "foot disk" RELATED [] @@ -283387,6 +292957,8 @@ property_value: external_ontology_notes "EHDAA2 does not have a single class for id: UBERON:0006872 name: handplate apical ectodermal ridge def: "An apical ectodermal ridge that is part of a handplate." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000729 xref: EMAPA:17247 is_a: UBERON:0004356 ! apical ectodermal ridge @@ -283398,6 +292970,8 @@ relationship: part_of UBERON:0006875 ! embryonic handplate id: UBERON:0006875 name: embryonic handplate def: "The distal elements of the developing limb of vertebrates that will give rise to the manus (hand)." [MGI:csmith, MP:0004576, UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "distal part of forelimb bud" RELATED [EMAPA:17245] synonym: "hand plate" EXACT [] synonym: "handplate" EXACT [] @@ -283417,6 +292991,8 @@ relationship: has_potential_to_develop_into UBERON:0002398 ! manus id: UBERON:0006876 name: vasculature of organ def: "A vasculature that is part of a organ." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "organ vasculature" EXACT [FMA:74612] synonym: "set of blood vessels of organ" EXACT [FMA:74612] @@ -283430,6 +293006,8 @@ relationship: part_of UBERON:0000062 ! organ id: UBERON:0006877 name: vasculature of liver def: "A vasculature that is part of a liver." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hepatic vascular element" RELATED [EMAPA:35501] synonym: "hepatic vasculature" EXACT [FMA:73748] @@ -283449,6 +293027,8 @@ property_value: external_ontology_notes "the EHDAA2 term and the FMA term may no id: UBERON:0006878 name: decidua parietalis def: "The part of the decidua in the pregnant human female lining the uterus." [http://www.fasthealth.com/dictionary/] +subset: human_subset +subset: mouse_subset synonym: "decidua vera" RELATED [BTO:0000334] synonym: "decidual parietalis" EXACT [FMA:86479] xref: BTO:0000334 @@ -283464,6 +293044,8 @@ id: UBERON:0006904 name: head mesenchyme from mesoderm def: "A head mesenchyme that develops_from a mesoderm." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "cranial mesoderm" RELATED [UBERON:0005280] synonym: "head mesenchyme derived from mesoderm" EXACT [] @@ -283496,6 +293078,8 @@ property_value: editor_note "merged in 'head mesoderm' from XAO/AAO and EFO here id: UBERON:0006905 name: mandibular process mesenchyme def: "Mesenchyme that is part of a mandibular prominence." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesenchyme of mandibular process" EXACT [EMAPA:17357] synonym: "mesenchyme of mandibular prominence" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EHDAA2:0001062 @@ -283511,6 +293095,8 @@ relationship: part_of UBERON:0005867 ! mandibular prominence id: UBERON:0006906 name: ala of nose def: "The lateral surface parts of the external nose, inferiorly, surrounding the naris[EoM]." [DOI:10.1002/ajmg.a.32600, Wikipedia:Ala_of_nose] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ala nasi" RELATED OMO:0003011 [Wikipedia:Ala_of_nose] synonym: "ala of the nose" RELATED [Wikipedia:Ala_of_nose] @@ -283533,6 +293119,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gr id: UBERON:0006907 name: slow muscle tissue def: "The darker-colored muscle tissue of some mammals, composed of slow twitch muscle fibers." [BTO:0002317] +subset: human_subset +subset: mouse_subset synonym: "red muscle" RELATED [BTO:0002317] synonym: "slow muscle" EXACT [BTO:0002317] synonym: "slow skeletal muscle tissue" EXACT [] @@ -283555,6 +293143,8 @@ id: UBERON:0006908 name: fast muscle tissue def: "The paler-colored muscle tissue of some mammals, composed of fast twitch muscle fibers." [BTO:0002318] comment: The fast and slow skeletal muscles are different in terms of twitching speed (Fitts 1994), and they are believed to be derived from distinct myogenic precursors (Stockdale 1992) +subset: human_subset +subset: mouse_subset synonym: "fast muscle" EXACT [BTO:0002318] synonym: "fast skeletal muscle tissue" EXACT [] synonym: "white muscle" RELATED [BTO:0002318] @@ -283571,6 +293161,8 @@ relationship: has_part CL:0000190 ! fast muscle cell id: UBERON:0006909 name: lumen of digestive tract def: "An anatomical space that surrounded_by a digestive tract." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "digestive tract lumen" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "gut cavity" EXACT [BTO:0000349] synonym: "gut lumen" EXACT [FMA:45677] @@ -283589,6 +293181,8 @@ relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0006911 name: digestive system secreted substance +subset: human_subset +subset: mouse_subset synonym: "digestive fluid" RELATED [BTO:0000346] synonym: "digestive juice" RELATED [BTO:0000346] synonym: "digestive system fluid or secretion" EXACT [MA:0002512] @@ -283601,6 +293195,8 @@ relationship: produced_by UBERON:0006925 ! digestive system gland id: UBERON:0006912 name: urinary bladder muscularis mucosa def: "A thin layer of smooth muscle within the bladder lamina propria." [http://www.pathologyoutlines.com/topic/bladderhistology.html, NCIT:C32207] +subset: human_subset +subset: mouse_subset synonym: "muscularis mucosa of bladder" BROAD [EMAPA:28619] synonym: "muscularis mucosa of urinary bladder" EXACT [OBOL:automatic] xref: EMAPA:28619 @@ -283621,6 +293217,8 @@ property_value: structure_notes "One study observed that in humans this layer is id: UBERON:0006913 name: lip epithelium def: "An epithelium that is part of a lip." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: BTO:0004468 xref: TAO:0005334 xref: ZFA:0005334 @@ -283634,6 +293232,8 @@ property_value: external_definition "The thick, high squamous-stratified epithel id: UBERON:0006914 name: squamous epithelium def: "An epithelium characterised by its most superficial layer consisting of squamous epithelial cells." [Wikipedia:Squamous_epithelium] +subset: human_subset +subset: mouse_subset xref: BTO:0002072 xref: NCIT:C12848 xref: SCTID:40118003 @@ -283649,6 +293249,8 @@ property_value: external_ontology_notes "FBbt:00007028 (squamous epithelium) A t id: UBERON:0006915 name: stratified squamous epithelium def: "Multilaminar epithelium which consists of more than one layer of squamous cells only one layer of which is in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, epithelium of wall of esophagus.[FMA]." [FMA:45563, Wikipedia:Stratified_squamous_epithelium] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epithelium stratificatum squamosum" EXACT [FMA:45563] xref: FMA:45563 @@ -283665,6 +293267,8 @@ relationship: has_part CL:0000076 ! squamous epithelial cell id: UBERON:0006916 name: non-keratinized epithelium of tongue def: "A non-keratinized stratified squamous epithelium that is part of a tongue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:62130 is_a: UBERON:0006919 ! tongue squamous epithelium is_a: UBERON:0010304 ! non-keratinized stratified squamous epithelium @@ -283676,6 +293280,8 @@ relationship: part_of UBERON:0001723 ! tongue id: UBERON:0006918 name: parakeratinized epithelium of tongue def: "A parakeratinized epithelium that is part of a tongue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "tongue parakeratinized epithelium" EXACT [] xref: FMA:74908 is_a: UBERON:0003357 ! epithelium of tongue @@ -283688,6 +293294,8 @@ relationship: part_of UBERON:0001723 ! tongue id: UBERON:0006919 name: tongue squamous epithelium def: "A squamous epithelium that is part of a tongue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "squamous epithelium of tongue" EXACT [OBOL:automatic] xref: MA:0002786 @@ -283704,6 +293312,8 @@ property_value: external_ontology_notes "this is a singleton subclass of tongue id: UBERON:0006920 name: esophagus squamous epithelium def: "A squamous epithelium that is part of a esophagus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "esophageal squamous epithelium" RELATED [OBOL:automatic] synonym: "squamous epithelium of esophagus" RELATED [OBOL:automatic] @@ -283725,6 +293335,8 @@ property_value: external_ontology_notes "MA introduces basal and squamous subtyp id: UBERON:0006921 name: stomach squamous epithelium def: "A squamous epithelium that is part of a stomach." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:35824 xref: MA:0001611 @@ -283739,6 +293351,8 @@ id: UBERON:0006922 name: cervix squamous epithelium def: "The squamous epithelium of the cervical portio is similar to that of the vagina, except that it is generally smooth and lacks rete pegs. Colposcopically, it appears featureless except for a fine network of vessels which is sometimes visible. The relative opacity and pale pink coloration of the squamous epithelium derives from its multi-layered histology and the location of its supporting vessels below the basement membrane." [http://www.asccp.org/practicemanagement/cervix/histologyofthenormalcervix/tabid/5842/default.aspx] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cervical squamous epithelium" EXACT [] xref: MA:0001725 @@ -283755,6 +293369,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0006923 name: vagina squamous epithelium def: "A squamous epithelium that is part of a vagina." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "vaginal squamous epithelium" EXACT [] xref: EMAPA:37794 {source="MA:th"} xref: MA:0001731 @@ -283770,6 +293386,8 @@ relationship: part_of UBERON:0000996 ! vagina id: UBERON:0006924 name: stomach glandular epithelium def: "A glandular epithelium that lines the stomach. The stomach's glandular epithelium is characterized by the presence of gastric glands." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epithelium of gastric gland" NARROW [FMA:63458] synonym: "gastric gland epithelium" RELATED [FMA:63458] @@ -283789,6 +293407,8 @@ property_value: editor_note "we follow Kardong in treating the glandular epithel id: UBERON:0006925 name: digestive system gland def: "Any gland that is part of the digestive system." [UBERON:cjm] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "digestive gland" RELATED [BTO:0000345] xref: AAO:0000130 @@ -283803,6 +293423,8 @@ relationship: part_of UBERON:0001007 ! digestive system id: UBERON:0006929 name: glandular columnar epithelium def: "Simple columnar epithelium that constitutes the secretory part of a gland. Examples: epithelium of stomach, luminal epithelium of lactiferous duct.[FMA]." [FMA:64800] +subset: human_subset +subset: mouse_subset xref: FMA:64800 xref: NCIT:C13182 xref: UMLS:C0225337 {source="ncithesaurus:Columnar_Epithelium"} @@ -283815,6 +293437,8 @@ relationship: composed_primarily_of CL:0000150 ! glandular epithelial cell [Term] id: UBERON:0006930 name: glandular cuboidal epithelium +subset: human_subset +subset: mouse_subset xref: FMA:66809 is_a: UBERON:0000484 ! simple cuboidal epithelium is_a: UBERON:0006799 ! glandular epithelium @@ -283826,6 +293450,8 @@ relationship: composed_primarily_of CL:0000150 ! glandular epithelial cell id: UBERON:0006931 name: stomach glandular region mucosa def: "Stomach mucosa that is lined with glandular epithelium and part of a stomach glandular region." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "stomach glandular region glandular mucous membrane" EXACT [EMAPA:27167] xref: EMAPA:27167 xref: MA:0001614 @@ -283838,6 +293464,8 @@ relationship: part_of UBERON:0011953 ! stomach glandular region id: UBERON:0006932 name: vestibular epithelium def: "An epithelium that is part of a vestibular labyrinth." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelium of vestibular labyrinth" EXACT [OBOL:automatic] synonym: "inner ear vestibular component epithelium" EXACT [RETIRED_EHDAA2:0000834] synonym: "vestibular sensory epithelium" EXACT [FMA:75606] @@ -283857,6 +293485,8 @@ relationship: part_of UBERON:0001862 ! vestibular labyrinth id: UBERON:0006934 name: sensory epithelium def: "Simple columnar epithelium made up of cells specialized to serve as sensory cells for the reception of external stimuli, as the sensory cells of the cochlea, vestibule, nasal mucosa, and tongue." [BTO:0000314] +subset: human_subset +subset: mouse_subset synonym: "neuroepithelium" RELATED INCONSISTENT [BTO:0000314] xref: CALOHA:TS-0682 xref: FMA:62410 @@ -283872,6 +293502,8 @@ property_value: external_ontology_notes "note that the definition sourced from D id: UBERON:0006935 name: crista ampullaris neuroepithelium def: "An epithelium that is part of a crista ampullaris." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ampullary crest neuroepithelium" RELATED [MA:0002870] synonym: "epithelium of crista of ampulla of semicircular duct of membranous labyrinth" EXACT [FMA:75636] @@ -283889,6 +293521,8 @@ id: UBERON:0006936 name: thymus subcapsular epithelium def: "The epithelial cells lining the capsule and trabeculae of the thymus." [ISBN:0-8153-1691-7, MGI:cwg, MP:0002369] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: MA:0000769 is_a: UBERON:0003846 ! thymus epithelium @@ -283903,6 +293537,8 @@ property_value: editor_note "TODO - check whether this is part of the thymus or id: UBERON:0006937 name: inner ear epithelium def: "The epithelial cell layer containing the sensory hair cells and their associated sensory nerve terminals." [MGI:csmith, MP:0003308] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:32883 xref: MA:0001189 @@ -283916,6 +293552,8 @@ relationship: part_of UBERON:0001846 ! internal ear id: UBERON:0006938 name: pinna surface epithelium def: "An epithelium that is part of a pinna." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001470 xref: EHDAA:8983 xref: EMAPA:17592 @@ -283929,6 +293567,8 @@ relationship: part_of UBERON:0001757 ! pinna id: UBERON:0006946 name: efferent duct def: "The efferent ducts (or efferent ductules or ductuli efferentes) connect the rete testis with the initial section of the epididymis. The ductuli are unilaminar and composed of columnar ciliated and non-ciliated (absorptive) cells. The ciliated cells serve to stir the luminal fluids, possibly to help ensure homogeneous absorption of water from the fluid produced by the testis, which results in an increase in the concentration of luminal sperm. The epithelium is surrounded by a band of smooth muscle that helps to propel the sperm toward the epididymis." [Wikipedia:Efferent_ducts] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ductuli efferentes testis" RELATED OMO:0003011 [Wikipedia:Efferent_ducts] synonym: "efferent ductule" EXACT [FMA:19081, Wikipedia:Efferent_ducts] @@ -283960,6 +293600,8 @@ name: male genital duct alt_id: UBERON:0010140 def: "A duct or series of ducts that transports sperm from the gonad. In mammals this is from the seminiferous tubules through rete testis, vas efferentia, epididymis, vas deferens, ejeculatory duct to the urethra." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "sperm duct" EXACT [ZFA:0001268] synonym: "sperm ducts" EXACT OMO:0003004 [TAO:0001268] xref: FMA:55678 @@ -283979,6 +293621,8 @@ property_value: taxon_notes "we use this as a generic grouping class for a numbe id: UBERON:0006948 name: efferent duct epithelium def: "An epithelium that is part of a efferent duct." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelium of efferent ductule of testis" EXACT [FMA:19195] xref: EMAPA:29747 xref: FMA:19195 @@ -283993,6 +293637,8 @@ relationship: part_of UBERON:0006946 ! efferent duct id: UBERON:0006949 name: cervical loop def: "The cervical loop is the location on an enamel organ in a developing tooth where the outer enamel epithelium and the inner enamel epithelium join. The cervical loop is a histologic term indicating a specific epithelial structure at the apical side of the tooth germ, consisting of loosely aggregated stellate reticulum in the center surrounded by stratum intermedium. These tissues are enveloped by a basal layer of epithelium known on the outside of the tooth as outer enamel epithelium and on the inside as inner enamel epithelium. During root formation the inner layers of epithelium disappear and only the basal layers are left creating Hertwig's Epithelial Root Sheath (HERS). At this point it is usually referred to as HERS instead of the cervical loop to indicate the structural difference[WP]." [Wikipedia:Cervical_loop] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Cervical_loop is_a: UBERON:0003843 ! dental epithelium relationship: continuous_with UBERON:0006951 ! inner dental epithelium @@ -284004,6 +293650,8 @@ id: UBERON:0006950 name: stellate reticulum alt_id: UBERON:0007441 def: "The stellate reticulum is a group of cells located in the center of the enamel organ of a developing tooth. These cells are star shaped and synthesize glycosaminoglycans. As glycosamingoglycans are produced, water is drawn in between the cells and stretch them apart. As they are moved further away from one another, the stellate reticulum maintain contact with one another through desmosomes, resulting in their unique appearance. stellate reticulum is lost after the first layer of dentin is laid down. this brings cells in inner enamel epithelium closer to blood vessels at the periphery[WP]." [Wikipedia:Stellate_reticulum] +subset: human_subset +subset: mouse_subset synonym: "reticulum stellatum" RELATED OMO:0003011 [Wikipedia:Stellate_reticulum] xref: BTO:0003910 xref: NCIT:C33613 @@ -284019,6 +293667,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Ce id: UBERON:0006951 name: inner dental epithelium def: "Inner layer of cells of the dental organ, nearest the odontogenic papilla, and composed of ameloblasts." [Wikipedia:Inner_enamel_epithelium, ZFA:0005136] +subset: human_subset +subset: mouse_subset synonym: "epithelium enameleum internum" RELATED OMO:0003011 [Wikipedia:Inner_enamel_epithelium] synonym: "inner enamel epithelium" EXACT [Wikipedia:Inner_enamel_epithelium, ZFA:0005136] synonym: "internal enamel epithelium" RELATED [BTO:0003463] @@ -284040,6 +293690,8 @@ property_value: structure_notes "The location of the enamel organ where the oute id: UBERON:0006952 name: outer dental epithelium def: "Outer layer of cells of the dental organ." [Wikipedia:Outer_enamel_epithelium, ZFA:0005137] +subset: human_subset +subset: mouse_subset synonym: "epithelium enameleum externum" RELATED OMO:0003011 [Wikipedia:Outer_enamel_epithelium] synonym: "external dental epithelium" EXACT [BTO:0003462] synonym: "external enamel epithelium" EXACT [Wikipedia:Outer_enamel_epithelium] @@ -284061,6 +293713,8 @@ property_value: external_definition "Outer layer of the dental organ.[TAO]" xsd: id: UBERON:0006953 name: ejaculatory duct epithelium def: "The ejaculatory duct epithelium is composed of cuboidal to columnar cells between or through which project the terminal parts of the ducts of the unicellular prostate glands." [PMID:1238970] +subset: human_subset +subset: mouse_subset xref: BTO:0002618 xref: EMAPA:29786 is_a: UBERON:0005156 ! reproductive structure @@ -284074,6 +293728,8 @@ property_value: editor_note "TODO - split off insect classes" xsd:string id: UBERON:0006954 name: mammary gland myoepithelium def: "The outer cell layer of the mammary gland epithelium bilayer which is located basal to the luminal (secretory) cells and adjacent to the basement membrane." [MGI:anna] +subset: human_subset +subset: mouse_subset synonym: "lactiferous ductal myo-epithelium" EXACT [FMA:67798] synonym: "mammary myoepithelium" EXACT [BTO:0002310] synonym: "myo-epithelium of lactiferous duct" EXACT [FMA:67798] @@ -284093,6 +293749,8 @@ property_value: structure_notes "The cells of this structure are specialized epi id: UBERON:0006955 name: uterine epithelium def: "An epithelium that is part of a uterus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "uterus epithelium" RELATED [BTO:0003082] xref: BTO:0003082 is_a: UBERON:0004804 ! oviduct epithelium @@ -284104,6 +293762,8 @@ relationship: part_of UBERON:0000995 ! uterus id: UBERON:0006956 name: buccal mucosa def: "The inner lining of the cheeks and lips." [http://www.medterms.com/] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: BTO:0003833 xref: CALOHA:TS-2349 @@ -284119,6 +293779,8 @@ relationship: part_of UBERON:0003729 ! mouth mucosa id: UBERON:0006957 name: submandibular gland primordium epithelium def: "An epithelium that is part of a submandibular gland primordium." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "submaxillary gland primordium epithelium" RELATED [EMAPA:17756] xref: EHDAA2:0001940 xref: EHDAA:9257 @@ -284134,6 +293796,8 @@ id: UBERON:0006958 name: great vein of heart def: "The Great Cardiac Vein (left coronary vein) begins at the apex of the heart and ascends along the anterior longitudinal sulcus to the base of the ventricles. It then curves to the left in the coronary sulcus, and reaching the back of the heart, opens into the left extremity of the coronary sinus. It receives tributaries from the left atrium and from both ventricles: one, the left marginal vein, is of considerable size, and ascends along the left margin of the heart." [Wikipedia:Great_cardiac_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "great cardiac vein" EXACT [FMA:4707] synonym: "vena cardiaca magna" RELATED OMO:0003011 [Wikipedia:Great_cardiac_vein] synonym: "vena cordis magna" RELATED OMO:0003011 [Wikipedia:Great_cardiac_vein] @@ -284158,6 +293822,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0006959 name: mandible angular process def: "A process which protrudes from the ventral caudal angle of the mandible, and acts as the attachment of the digastric muscle." [http://medical-dictionary.thefreedictionary.com/mandibular+angular+process] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "angle of mandible" RELATED [FMA:59459] synonym: "mandibular angle" RELATED [MA:0002873] @@ -284176,6 +293842,8 @@ id: UBERON:0006960 name: ovary stroma def: "The stroma of the ovary is a peculiar soft tissue, abundantly supplied with blood vessels, consisting for the most part of spindle-shaped cells with a small amount of ordinary connective tissue. These cells have been regarded by some anatomists as unstriped muscle cells, which, indeed, they most resemble; by others as connective-tissue cells. On the surface of the organ this tissue is much condensed, and forms a layer composed of short connective-tissue fibers, with fusiform cells between them. The stroma of the ovary may contain interstitial cells resembling those of the testis." [Wikipedia:Stroma_of_ovary] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "interstitial tissue of ovary" EXACT [FMA:18626] synonym: "ovarian stroma" EXACT [FMA:18626] synonym: "ovary stroma" EXACT [MA:0002991] @@ -284202,6 +293870,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0006964 name: pars distalis of adenohypophysis def: "The distal part of adenohypophysis: the part that makes up the main body of the gland." [Dorlands_Medical_Dictionary:MerckSource, Wikipedia:Pars_distalis] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "anterior lobe" RELATED [MA:0000854] synonym: "DHP" BROAD OMO:0003000 [BIRNLEX:1022, NIFSTD:NeuroNames_abbrevSource] @@ -284246,6 +293916,8 @@ id: UBERON:0006965 name: vascular cord def: "The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis[GO]. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels[ZFA]." [GO:0072360, ZFA:0005077] subset: efo_slim +subset: human_subset +subset: mouse_subset xref: EFO:0003709 xref: TAO:0005077 xref: ZFA:0005077 @@ -284259,6 +293931,8 @@ relationship: site_of GO:0048754 ! branching morphogenesis of an epithelial tube id: UBERON:0006966 name: coronary capillary def: "A capillary that is part of the coronary system." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "heart capillary" EXACT [GO:0003248] xref: ZFA:0005813 is_a: UBERON:0001982 ! capillary @@ -284272,6 +293946,7 @@ relationship: part_of UBERON:0018674 {source="ZFA"} ! heart vasculature id: UBERON:0006967 name: horn def: "A pointed projection of the skin on the head of various animals, consisting of a covering of horn (keratin and other proteins) surrounding a core of living bone." [Wikipedia:Horn_(anatomy)] +subset: mouse_subset subset: pheno_slim xref: GAID:1225 xref: MESH:D006733 @@ -284286,6 +293961,7 @@ relationship: surrounds UBERON:0001474 ! bone element [Term] id: UBERON:0006968 name: keratin sheath of horn +subset: mouse_subset is_a: UBERON:0000061 ! anatomical structure relationship: composed_primarily_of GO:0045095 ! keratin filament relationship: part_of UBERON:0006967 ! horn @@ -284294,6 +293970,8 @@ relationship: part_of UBERON:0006967 ! horn id: UBERON:0006969 name: cranial appendage def: "An anatomical projection that is part of and protrudes from the head." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0000033 ! head property_value: editor_note "revisit after CARO2 appendage issue is sorted. Note that antennae are appendages that protrude from the head" xsd:string @@ -284301,6 +293979,7 @@ property_value: editor_note "revisit after CARO2 appendage issue is sorted. Note [Term] id: UBERON:0006970 name: bony core of horn +subset: mouse_subset is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0006967 ! horn @@ -284320,6 +293999,8 @@ relationship: in_taxon NCBITaxon:9850 ! Cervidae id: UBERON:0006972 name: nephridium def: "An exceretory tubule that usually opens to the exterior by a nephridiopore. The inner end of the tubule may be blind, ending in flame cells (protonephridium) or may open into the coelom through a ciliated funnel (metanephridium)." [Wikipedia:Nephridium] +subset: human_subset +subset: mouse_subset xref: BTO:0000923 xref: Wikipedia:Nephridium is_a: UBERON:0006555 ! excretory tube @@ -284329,6 +294010,8 @@ id: UBERON:0006973 name: protonephridium def: "A network of dead-end tubules lacking internal openings found in the Phylums Platyhelminthes, kinorhyncha and Rotifera." [Wikipedia:Nephridium#Metanephridia] comment: The ends are called flame cells (if cilliated) or solenocytes (if flagellated); they function in osmoregulation and ionoregulation. The terminal cells are located at the blind end of the protonephridium. Each cell has one or more cilia and their beating inside the protonephridial tube creates an outward going current and hence a partial pressurization in the blind of the tube. Because of this pressurization drives waste fluids from the inside of the animal, they are pulled through small perforations in the terminal cells and into the protonephridium. The perforations in the terminal cell are large enough for small molecules to pass, but larger proteins are retained within the animal. From the bottom of the protonephridium the solutes are led through the tube, formed by the canal cells, and exits the animal from a small opening formed by the nephridiopore. Selective reabsorption of useful molecules by the canal cells occurs as the solutes pass down the tubule. Protonephridia are generally found in basal organisms such as flatworms. Protonephridia likely first arose as a way to cope with a hypotonic environment by removing excess water from the organism (osmoregulation). Their use as excretory/ionoregulatory structures likely arose secondarily +subset: human_subset +subset: mouse_subset xref: BILA:0000126 xref: Wikipedia:Nephridium#Metanephridia is_a: UBERON:0006972 ! nephridium @@ -284337,6 +294020,8 @@ is_a: UBERON:0006972 ! nephridium id: UBERON:0006974 name: metanephridium def: "A type of excretory gland or nephridium found in many types of invertebrates such as Annelids, Arthropods and Molluscs. It typically consists of a ciliated funnel opening into the body cavity or coelom connected to a duct which may be variously glandularized, folded or expanded (vesiculate) and which typically opens to the organism's exterior. These ciliated tubules pump water carrying surplus ions, metabolic waste, toxins from food, and useless hormones out of the organism through openings known as nephrostomes. This waste is passed out of the body at the nephridiopore. The primary urine produced by filtration of blood (or a similar functioning fluid) is modified into secondary urine through selective reabsorption by the cells lining the metanephridium. In many earthworms the nephridial ducts open into the digestive tract instead, a condition known as enteronephry." [Wikipedia:Nephridium#Metanephridia] +subset: human_subset +subset: mouse_subset xref: BILA:0000127 xref: Wikipedia:Nephridium#Metanephridia is_a: UBERON:0006972 ! nephridium @@ -284345,6 +294030,8 @@ is_a: UBERON:0006972 ! nephridium id: UBERON:0006976 name: peptonephridium def: "Organs opening into the buccal cavity of pharynx (supposedly modified nephridia) of invertebrates." [BTO:0004280] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "esophageal appendage" RELATED [BTO:0004280] synonym: "oesophageal appendage" RELATED [BTO:0004280] @@ -284359,6 +294046,8 @@ id: UBERON:0006983 name: anatomical point def: "Non-material anatomical entity of zero dimension, which forms a boundary of an anatomical line or surface." [FMA:9658, http://orcid.org/0000-0001-9114-8737] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: upper_level xref: AAO:0010266 xref: AEO:0000009 @@ -284377,6 +294066,8 @@ id: UBERON:0006984 name: anatomical surface def: "A two dimensional anatomical structure that is the boundary between an anatomical structure and an anatomical substance, an anatomical space or the organism's environment. Examples include the surface of your skin, the surface of the lining of your gut; the surface of the endothelium of you aorta that is in contact with blood.n." [CARO:0001002] comment: Old definition: 'Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures.' Note, in the new definition, the space referred to is not necessarily an anatomical space. It may be the outside of an organism. +subset: human_subset +subset: mouse_subset subset: upper_level xref: BILA:0000010 xref: CARO:0001002 @@ -284391,6 +294082,8 @@ id: UBERON:0007005 name: cardiogenic splanchnic mesoderm def: "The splanchnic mesoderm in the cardiogenic region where the heart develops; it gives rise to endocardial heart tubes that fuse to form the primordial cardiac tube, the heart primordium[web]. Two migratory heart primordia that move ventrally during the course of neurulation, and then fuse[XAO]." [http://www.drugs.com/dict/cardiogenic-mesoderm.html, https://github.com/obophenotype/insect_neuroanatomy_ontology/issues/7, XAO:0000235] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cardiac mesoderm" RELATED [XAO:0000235] synonym: "cardiogenic mesoderm" RELATED [http://www.drugs.com/dict/cardiogenic-mesoderm.html] @@ -284432,6 +294125,8 @@ consider: ZFA:0000093 id: UBERON:0007010 name: cleaving embryo def: "Organism at the cleavage stage." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: BILA:0000058 is_a: UBERON:0000922 ! embryo intersection_of: UBERON:0000468 ! multicellular organism @@ -284444,6 +294139,8 @@ relationship: existence_starts_with UBERON:0000107 ! cleavage stage id: UBERON:0007021 name: sexually immature organism def: "A multicellular organism that is at the juvenile stage." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "juvenile" BROAD [] synonym: "juvenile organism" EXACT [BILA:0000076] synonym: "juveniles" EXACT OMO:0003004 [TAO:0002047] @@ -284463,6 +294160,8 @@ property_value: external_definition "Whole organism that is not fully grown or s id: UBERON:0007023 name: adult organism def: "A multicellular organism that existence_ends_with a post-juvenile adult stage and existence_starts_with a post-juvenile adult stage." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "adult" BROAD [] synonym: "adults" EXACT OMO:0003004 [TAO:0002046] xref: BILA:0000078 @@ -284484,6 +294183,8 @@ property_value: external_definition "Whole organism that is fully grown or sexua [Term] id: UBERON:0007026 name: presumptive gut +subset: human_subset +subset: mouse_subset synonym: "embryonic digestive tube" RELATED [] synonym: "future digestive tract" EXACT [] synonym: "future digestive tube" EXACT [] @@ -284507,6 +294208,8 @@ property_value: development_notes "The endodermal cells generate only the lining [Term] id: UBERON:0007037 name: mechanosensory system +subset: human_subset +subset: mouse_subset xref: BILA:0000142 is_a: UBERON:0001032 ! sensory system intersection_of: UBERON:0001032 ! sensory system @@ -284524,6 +294227,8 @@ consider: UBERON:0001135 [Term] id: UBERON:0007095 name: somatic musculature +subset: human_subset +subset: mouse_subset xref: BILA:0000133 is_a: UBERON:0000383 ! musculature of body @@ -284532,6 +294237,8 @@ id: UBERON:0007097 name: chordo neural hinge def: "Portion of tissue that is posterior to the developing notochord during tail bud extension." [http://dev.biologists.org/content/136/10/1591.full, ZFA:0001082] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "chordoneural hinge" EXACT [VHOG:0001382] synonym: "CNH" EXACT OMO:0003000 [XAO:0000108] xref: EFO:0003623 @@ -284550,6 +294257,8 @@ property_value: taxon_notes "In mouse and chick, the derivative of the NSB (with id: UBERON:0007098 name: mandibular neural crest def: "Cranial neural crest that migrates into the mandibular arch." [ZFA:0007064] +subset: human_subset +subset: mouse_subset xref: TAO:0007064 xref: XAO:0000024 xref: ZFA:0007064 @@ -284560,6 +294269,8 @@ relationship: part_of UBERON:0003852 {source="ZFA"} ! rhombencephalon neural cre id: UBERON:0007099 name: hyoid neural crest def: "Cranial neural crest that migrates into the hyoid arch." [ZFA:0007065] +subset: human_subset +subset: mouse_subset synonym: "hyoid crest" EXACT [XAO:0000025] xref: TAO:0007065 xref: XAO:0000025 @@ -284573,6 +294284,8 @@ name: primary circulatory organ def: "A hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood or analogs[GO,modified]." [GO:0007507] comment: Gene notes: Bmp, Nkx, Gata subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "adult heart" RELATED [FBbt:00003154] synonym: "dorsal tube" NARROW [Wikipedia:Heart] synonym: "heart" NARROW [GO:0007507] @@ -284590,6 +294303,8 @@ property_value: taxon_notes "note we reserve the subclass 'heart' from the verte id: UBERON:0007105 name: vitelline duct def: "A long narrow tube that joins the yolk-sac to the midgut lumen of the developing fetus." [Wikipedia:Vitelline_duct] +subset: human_subset +subset: mouse_subset synonym: "ductus vitellinus" RELATED [] synonym: "embryonic yolk stalk" RELATED [Wikipedia:Vitelline_duct] synonym: "omphalomesenteric duct" RELATED [MESH:A16.254.891, Wikipedia:Vitelline_duct] @@ -284610,6 +294325,8 @@ property_value: development_notes "In humans, it appears at the end of the fourt id: UBERON:0007106 name: chorionic villus def: "One of the minute vascular projections of the fetal chorion that combines with maternal uterine tissue to form the placenta." [BTO:0001161, Wikipedia:Chorionic_villi] +subset: human_subset +subset: mouse_subset synonym: "chorionic villi" RELATED OMO:0003004 [MESH:A16.254.403.473.200] synonym: "chorionic villous" RELATED [Wikipedia:Chorionic_villi] synonym: "chorionic villus" RELATED [GAID:1300] @@ -284641,6 +294358,8 @@ property_value: taxon_notes "The mouse and human placentas have labyrinthine and id: UBERON:0007108 name: vernix caseosa def: "An unctuous substance composed of sebum and desquamated epithelial cells, which covers the skin of the fetus." [MESH:A12.200.946, Wikipedia:Vernix_caseosa] +subset: human_subset +subset: mouse_subset synonym: "vernix" RELATED [] synonym: "vernix caseosa" RELATED [MESH:A12.200.946] xref: GAID:1174 @@ -284659,6 +294378,8 @@ relationship: surrounds UBERON:0002097 ! skin of body id: UBERON:0007109 name: meconium def: "A dark greenish mass that accumulates in the bowel during fetal life and is discharged shortly after birth." [BTO:0000838] +subset: human_subset +subset: mouse_subset xref: BTO:0000838 xref: MESH:D008470 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ncithesaurus:Meconium @@ -284670,6 +294391,8 @@ relationship: part_of UBERON:0000323 ! late embryo id: UBERON:0007111 name: Douglas' pouch def: "The rectouterine pouch (or rectouterine excavation, rectovaginal, Ehrhardt-Cole Recess or Pouch of Douglas) is the extension of the peritoneal cavity between the rectum and back wall of the uterus in the female human body. The rectouterine pouch is used in the treatment of end-stage renal failure in patients who are treated by peritoneal dialysis. The tip of the dialysis catheter is placed into the deepest point of the pouch. In women it is the deepest point of the peritoneal cavity, posterior to (behind) the uterus and anterior to (in front of) rectum. (The pouch on the other side of the uterus is the vesicouterine excavation. ) It is near the posterior fornix of the vagina. In men, the region corresponding to the rectouterine pouch is the rectovesical excavation, which lies between the urinary bladder and rectum. (There is no equivalent to the vesicouterine excavation.)." [Wikipedia:Recto-uterine_pouch] +subset: human_subset +subset: mouse_subset synonym: "cavum Douglassi" RELATED OMO:0003011 [Wikipedia:Recto-uterine_pouch] synonym: "cul de sac of douglas" RELATED [MESH:A01.047.025.600.225] synonym: "cul-de-sac of douglsa" RELATED [MESH:A01.047.025.600.225] @@ -284704,6 +294427,7 @@ id: UBERON:0007113 name: venom def: "Poisonous animal secretions forming fluid mixtures of many different enzymes, toxins, and other substances. These substances are produced in specialized glands and secreted through specialized delivery systems (nematocysts, spines, fangs, etc.) for disabling prey or predator." [MESH:A12.200.935, Wikipedia:Venom] subset: grouping_class +subset: mouse_subset synonym: "zootoxin" RELATED [Wikipedia:Venom] xref: BTO:0001439 xref: MESH:D014688 @@ -284723,6 +294447,8 @@ id: UBERON:0007115 name: deciduous tooth def: "One of the first set of teeth in the growth development of humans and many other mammals[WP]." [Wikipedia:Deciduous_teeth] comment: GAT in FMA. +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "dentes decidui" RELATED OMO:0003011 [Wikipedia:Deciduous_teeth] synonym: "primary tooth" EXACT [FMA:55655] @@ -284745,6 +294471,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/97/De id: UBERON:0007116 name: primary dentition def: "The set of teeth first in order or time of development that will be replaced by permanent dentition upon their loss." [MESH:A14.254.245] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "baby teeth" EXACT [FMA:75151] synonym: "deciduous dentition" RELATED [GAID:1252] @@ -284764,6 +294492,8 @@ is_a: UBERON:0003672 ! dentition id: UBERON:0007118 name: umbilicus def: "The pit in the center of the abdominal wall marking the point where the umbilical cord entered in the fetus." [MESH:A01.047.849, Wikipedia:Navel] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "navel" EXACT [FMA:61584] synonym: "umbilical part of abdomen" EXACT [FMA:61584] @@ -284787,6 +294517,8 @@ id: UBERON:0007119 name: neck of femur def: "The femur neck or neck of the femur is a flattened pyramidal process of bone, connecting the femoral head with the femoral shaft, and forming with the latter a wide angle opening medialward." [Wikipedia:Femur_neck] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "collum femoris" RELATED OMO:0003011 [Wikipedia:Femur_neck] synonym: "femoral neck" EXACT [FMA:42385] @@ -284814,6 +294546,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/97/Gr id: UBERON:0007120 name: premolar tooth def: "The premolar teeth or bicuspids are transitional teeth located between the canine and molar teeth." [Wikipedia:Premolar] +subset: human_subset subset: pheno_slim synonym: "bicuspid" RELATED [Wikipedia:Premolar] synonym: "bicuspid teeth" RELATED [Wikipedia:Premolar] @@ -284852,6 +294585,8 @@ name: skin nerve field def: "A zone of skin that is mainly innervated by a single sensory nerve. A nerve field innervated by exactly one dorsal root is called a dermatome." [http://orcid.org/0000-0002-6601-2165] comment: Examples: V1, V2 and V3 distributions of the trigeminal nerve; the zone of skin innervated by S2 subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "dermatome" RELATED [Wikipedia:Dermatome_(anatomy)] synonym: "dermatome segment of skin" RELATED [Wikipedia:Dermatome_(anatomy)] synonym: "dermatomic area" RELATED [Wikipedia:Dermatome_(anatomy)] @@ -284871,6 +294606,8 @@ name: pharyngeal pouch 1 alt_id: UBERON:0005718 def: "A pharyngeal pouch that is between pharyngeal arches 1 and 2." [ISBN:0124020607, PMID:16313389, VHOG:0000970] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "1st arch branchial pouch" EXACT [EHDAA2:0000013] @@ -284916,6 +294653,8 @@ name: pharyngeal pouch 2 alt_id: UBERON:0005715 def: "A pharyngeal puch that is between the pharyngeal arches 2 and 3." [ISBN:0124020607, PMID:16313389] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "2nd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000060] @@ -284961,6 +294700,8 @@ name: pharyngeal pouch 3 alt_id: UBERON:0005716 def: "A pharyngeal pouch that between pharyngeal arches 3 and 4." [ISBN:0124020607, PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Third_pouch] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "3rd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000076] @@ -285003,6 +294744,8 @@ id: UBERON:0007125 name: pharyngeal pouch 4 def: "A pharyngeal pouch between pharyngeal arch 4 and arch 5 or 6 (a fifth arch never establishes in amniotes)." [ISBN:0124020607, PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Fourth_pouch] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "4th arch branchial pouch" EXACT [RETIRED_EHDAA2:0000090] @@ -285046,6 +294789,8 @@ id: UBERON:0007126 name: pharyngeal pouch 5 def: "A pharyngeal pouch between pharyngeal arches 5 and 6." [ISBN:0124020607] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "5th branchial pouch" EXACT [] synonym: "5th pharyngeal pouch" RELATED [VHOG:0001206] @@ -285074,6 +294819,8 @@ id: UBERON:0007127 name: pharyngeal pouch 6 def: "A pharyngeal pouch between pharyngeal arches 6 and 7." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "6th arch branchial pouch" EXACT [] synonym: "6th branchial pouch" EXACT [] @@ -285095,6 +294842,8 @@ property_value: taxon_notes "in humans pouches 5 and 6 are hard to distinguish." id: UBERON:0007128 name: glomeral mesenchyme def: "Portion of tissue that consists of the precursors of the pronephric glomus or glomerulus; derived from the medial portion of the pronephric intermediate mesoderm." [ISBN:0815318960] +subset: human_subset +subset: mouse_subset synonym: "corpuscle" RELATED [XAO:0000110] synonym: "glomerulus" RELATED [XAO:0000110] xref: XAO:0000110 @@ -285106,6 +294855,8 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:0007132 name: head kidney def: "Teleost head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis[ZFA,modified]." [DOI:10.1242/dev.00427, ZFIN:ZDB-PUB-040923-1] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "anterior kidney" EXACT [ZFA:0000669] synonym: "kidney marrow" EXACT [ZFA:0000669] @@ -285130,6 +294881,8 @@ id: UBERON:0007134 name: trunk ganglion def: "Ganglion which is located in the trunk." [ZFIN:curator] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "body ganglion" EXACT [MAT:0000344] synonym: "trunk ganglia" EXACT OMO:0003004 [ZFA:0001573] xref: EFO:0000901 @@ -285147,6 +294900,8 @@ id: UBERON:0007135 name: neural keel def: "An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section." [ZFIN:ZDB-PUB-961014-576] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "presumptive central nervous system" RELATED [ZFA:0000131] xref: EFO:0003497 xref: TAO:0000131 @@ -285159,6 +294914,8 @@ property_value: external_definition "An intermediate stage (between the neural p id: UBERON:0007136 name: rectouterine fold def: "These folds of the rectouterine excavation are named the sacrogenital or rectouterine folds. They contain a considerable amount of fibrous tissue and non-striped muscular fibers which are attached to the front of the sacrum and constitute the uterosacral ligaments." [Wikipedia:Recto-uterine_fold] +subset: human_subset +subset: mouse_subset synonym: "fold of Douglas" EXACT [FMA:16533] synonym: "plica rectouterina" EXACT OMO:0003011 [FMA:16533, FMA:TA] synonym: "plica rectouterina" RELATED OMO:0003011 [Wikipedia:Recto-uterine_fold] @@ -285177,6 +294934,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b5/Gr id: UBERON:0007140 name: parietal mesothelium def: "Mesothelium overs the body walls is called the parietal mesothelium." [Wikipedia:Mesothelium] +subset: human_subset +subset: mouse_subset xref: EMAPA:37714 {source="MA:th"} xref: MA:0000566 is_a: UBERON:0001136 ! mesothelium @@ -285185,6 +294944,8 @@ is_a: UBERON:0001136 ! mesothelium id: UBERON:0007141 name: visceral mesothelium def: "Mesothelium that covers the internal organs is called visceral mesothelium." [Wikipedia:Mesothelium] +subset: human_subset +subset: mouse_subset xref: EMAPA:37804 {source="MA:th"} xref: MA:0000567 is_a: UBERON:0001136 ! mesothelium @@ -285193,6 +294954,8 @@ is_a: UBERON:0001136 ! mesothelium id: UBERON:0007142 name: left internal carotid artery def: "An internal carotid artery that branching_part_of a left common carotid artery plus branches." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arteria caritis interna sinistra" EXACT [FMA:4062] xref: EMAPA:16329 xref: FMA:4062 @@ -285207,6 +294970,8 @@ relationship: part_of UBERON:0001536 ! left common carotid artery plus branches id: UBERON:0007143 name: right internal carotid artery def: "An internal carotid artery that branching_part_of a right common carotid artery plus branches." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arteria carotis interna dextra" EXACT [FMA:3949] xref: EMAPA:16330 xref: FMA:3949 @@ -285221,6 +294986,8 @@ relationship: part_of UBERON:0001531 ! right common carotid artery plus branches id: UBERON:0007144 name: embryonic post-anal tail def: "An embryonic structure that will either develop into a post-anal tail or recede into a vestigial remnant of the tail." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "embryo tail" EXACT [FMA:85540] synonym: "embryonic tail" RELATED [FMA:85540] synonym: "tail of embryo" EXACT [FMA:85540] @@ -285235,6 +295002,8 @@ property_value: development_notes "By the fourth week a clear tail is seen in th [Term] id: UBERON:0007145 name: dome of diaphragm +subset: human_subset +subset: mouse_subset synonym: "diaphragm dome" EXACT [FMA:13332] xref: EMAPA:18046 xref: FMA:13332 @@ -285249,6 +295018,8 @@ id: UBERON:0007146 name: posterior spinal artery def: "A spinal artery that arises from the vertebral artery, adjacent to the medulla oblongata[WP,modified]." [Wikipedia:Posterior_spinal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "dorsal spinal artery" EXACT [FMA:50522] xref: EMAPA:18243 xref: FMA:50522 @@ -285265,6 +295036,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0007147 name: lumen of midgut def: "An anatomical cavity that surrounded_by a midgut." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "midgut lumen" EXACT [FMA:54366] xref: EMAPA:18377 xref: FMA:54366 @@ -285278,6 +295051,8 @@ relationship: part_of UBERON:0001045 ! midgut id: UBERON:0007148 name: lumen of hindgut def: "An anatomical cavity that surrounded_by a hindgut." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hindgut lumen" EXACT [FMA:54367] xref: EMAPA:18396 xref: FMA:54367 @@ -285292,6 +295067,8 @@ id: UBERON:0007149 name: inferior thyroid artery def: "One of the three branches of the thyroid axis that supplies the thyroid gland and branches to form the ascending cervical, esophageal, inferior laryngeal, muscular and tracheal arteries." [ncithesaurus:Inferior_Thyroid_Artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria thyreoidea inferior" RELATED OMO:0003011 [Wikipedia:Inferior_thyroid_artery] xref: EMAPA:18623 xref: FMA:10662 @@ -285308,6 +295085,8 @@ id: UBERON:0007150 name: superior thyroid artery def: "The superior thyroid artery arises from the external carotid artery just below the level of the greater cornu of the hyoid bone and ends in the thyroid gland." [Wikipedia:Superior_thyroid_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria thyreoidea superior" RELATED OMO:0003011 [Wikipedia:Superior_thyroid_artery] xref: EMAPA:18624 xref: FMA:49472 @@ -285325,6 +295104,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5a/Pl id: UBERON:0007151 name: mitral valve leaflet def: "A valve leafleft that is part of a mitral valve." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "leaflet of mitral valve" EXACT [FMA:7241] synonym: "mitral valve leaflet" EXACT [FMA:7241] @@ -285348,6 +295129,8 @@ id: UBERON:0007152 name: inferior sagittal sinus def: "An intracranial venous sinus that lies in a midline location along the lower free border of the falx cerebri of the brain. The sinus receives blood from the great cerebral vein and joins the superior sagittal sinus posteriorly." [ncithesaurus:Inferior_Sagittal_Sinus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:18635 xref: FMA:50768 xref: NCIT:C12514 @@ -285365,6 +295148,8 @@ id: UBERON:0007153 name: superior epigastric artery def: "An artery that arises from the internal thoracic arteryand anastomoses with the inferior epigastric artery at the umbilicus and supplies the anterior part of the abdominal wall and some of the diaphragm." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Superior_epigastric_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "a. epigastrica superior" RELATED [Wikipedia:Superior_epigastric_artery] synonym: "superior epigastric" BROAD [Wikipedia:Superior_epigastric_artery] synonym: "superior epigastric branch" BROAD [Wikipedia:Superior_epigastric_artery] @@ -285385,6 +295170,8 @@ id: UBERON:0007154 name: inferior epigastric vein def: "The blood vessel carrying deoxygenated blood that arises from the superior epigastric vein and empties into the external iliac vein." [ncithesaurus:Deep_Epigastric_Vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "deep epigastric vein" RELATED [] synonym: "venae epigastricae inferiores" RELATED OMO:0003011 [] xref: EMAPA:18760 @@ -285401,6 +295188,8 @@ id: UBERON:0007155 name: superior epigastric vein def: "A vein that drains into the internal thoracic vein, anastomosing with the inferior epigastric vein at the level of the umbilicus and drains the anterior part of the abdominal wall and some of the diaphragm. Along its course, it is accompanied by a similarly named artery, the superior epigastric artery." [UBERON:cjm, Wikipedia:Superior_epigastric_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "venae epigastricae superiores" RELATED OMO:0003011 [] xref: EMAPA:18761 xref: FMA:4731 @@ -285415,6 +295204,8 @@ id: UBERON:0007156 name: inferior thyroid vein def: "The inferior thyroid veins two, frequently three or four, in number, arise in the venous plexus on the thyroid gland, communicating with the middle and superior thyroid veins. They form a plexus in front of the trachea, behind the Sternothyreoidei. From this plexus, a left vein descends and joins the left innominate trunk, and a right vein passes obliquely downward and to the right across the innominate artery to open into the right innominate vein, just at its junction with the superior vena cava; sometimes the right and left veins open by a common trunk in the latter situation. These veins receive esophageal tracheal, and inferior laryngeal veins, and are provided with valves at their terminations in the innominate veins." [Wikipedia:Inferior_thyroid_veins] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "inferior thyroid venous tree" EXACT [FMA:4728] synonym: "vena thyroidea inferioris" EXACT [FMA:4728] xref: EMAPA:18763 @@ -285430,6 +295221,8 @@ id: UBERON:0007157 name: superior thyroid vein def: "The superior thyroid vein begins in the substance and on the surface of the thyroid gland, by tributaries corresponding with the branches of the superior thyroid artery, and ends in the upper part of the internal jugular vein. It receives the superior laryngeal and cricothyroid veins." [Wikipedia:Superior_thyroid_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:18764 xref: FMA:14323 xref: SCTID:303421009 @@ -285442,6 +295235,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0007158 name: lumen of anal canal def: "An anatomical cavity that surrounded_by a anal canal." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anal canal lumen" EXACT [FMA:17357] xref: EMAPA:18836 xref: FMA:17357 @@ -285455,6 +295250,8 @@ relationship: part_of UBERON:0000159 ! anal canal id: UBERON:0007159 name: lumen of colon def: "An anatomical cavity that surrounded_by a colon." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "colon lumen" EXACT [FMA:18374] synonym: "colonic lumen" RELATED [FMA:18374] xref: EMAPA:18945 @@ -285471,6 +295268,8 @@ id: UBERON:0007160 name: inferior petrosal sinus def: "The inferior petrosal sinus, within the human head, is an area beneath the brain, which allows blood veins to span the area, from the center of the head downward. It drains from the cavernous sinus (beneath the brain) to the sigmoid sinuses above the internal jugular vein." [Wikipedia:Inferior_petrosal_sinus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "sinus petrosal inferior" EXACT [FMA:50770] xref: EMAPA:19234 xref: FMA:50770 @@ -285484,6 +295283,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0007161 name: medial arcuate ligament def: "The medial arcuate ligament (also medial lumbocostal arch) is tendinous fascia that arches over the psoas major muscle as it passes through the diaphragm." [Wikipedia:Medial_arcuate_ligament] +subset: human_subset +subset: mouse_subset synonym: "internal arcuate ligament" RELATED [Wikipedia:Medial_arcuate_ligament] synonym: "medial lumbocostal arch" RELATED [Wikipedia:Medial_arcuate_ligament] synonym: "medial lumbocostal arches" RELATED [Wikipedia:Medial_arcuate_ligament] @@ -285497,6 +295298,8 @@ disjoint_from: UBERON:0007162 {source="lexical"} ! lateral arcuate ligament id: UBERON:0007162 name: lateral arcuate ligament def: "The lateral arcuate ligament (also lateral lumbocostal arch) is a ligament under the diaphragm that arches across the upper part of the quadratus lumborum. It is traversed by the subcostal nerve, artery and vein." [Wikipedia:Lateral_arcuate_ligament] +subset: human_subset +subset: mouse_subset synonym: "external arcuate ligament" RELATED [Wikipedia:Lateral_arcuate_ligament] synonym: "lateral lumbocostal arch" RELATED [Wikipedia:Lateral_arcuate_ligament] xref: EMAPA:19238 @@ -285508,6 +295311,8 @@ is_a: UBERON:0015214 ! arcuate ligament id: UBERON:0007163 name: superior nasal meatus def: "The superior meatus, the smallest of the three meatuses of the nose, occupies the middle third of the lateral wall of the nasal cavity. It lies between the superior nasal conchC& and middle nasal conchC&; the sphenopalatine foramen opens into it behind, and the posterior ethmoidal cells in front. The sphenoidal sinus opens into a recess, the sphenoethmoidal recess, which is placed above and behind the superior concha." [Wikipedia:Superior_nasal_meatus] +subset: human_subset +subset: mouse_subset synonym: "meatus nasi superior" RELATED OMO:0003011 [Wikipedia:Superior_nasal_meatus] synonym: "superior meatus" RELATED [Wikipedia:Superior_nasal_meatus] xref: EMAPA:19276 @@ -285523,6 +295328,8 @@ property_value: editor_note "TODO - check FMA" xsd:string id: UBERON:0007164 name: distal radio-ulnar joint def: "The Distal Radioulnar Articulation (inferior radioulnar joint) is a pivot-joint formed between the head of the ulna and the ulnar notch on the distal radius." [Wikipedia:Distal_radioulnar_articulation] +subset: human_subset +subset: mouse_subset synonym: "articulation radioulnaris distalis" EXACT [FMA:35290] synonym: "distal radioulnar joint" EXACT [FMA:35290] synonym: "inferior radioulnar joint" EXACT [FMA:35290] @@ -285538,6 +295345,8 @@ is_a: UBERON:0001528 ! radio-ulnar joint id: UBERON:0007165 name: proximal radio-ulnar joint def: "The proximal radioulnar articulation (superior radioulnar joint) is a trochoid or pivot joint between the circumference of the head of the radius and the ring formed by the radial notch of the ulna and the annular ligament." [Wikipedia:Proximal_radioulnar_articulation] +subset: human_subset +subset: mouse_subset synonym: "superior radioulnar joint" EXACT [FMA:38860] xref: EMAPA:19317 xref: FMA:38860 @@ -285549,6 +295358,8 @@ is_a: UBERON:0001528 ! radio-ulnar joint [Term] id: UBERON:0007166 name: left dome of diaphragm +subset: human_subset +subset: mouse_subset synonym: "left dome of diaphragm viewed radiologically" EXACT [FMA:13334] xref: EMAPA:25047 xref: FMA:13334 @@ -285558,6 +295369,8 @@ is_a: UBERON:0007145 ! dome of diaphragm [Term] id: UBERON:0007167 name: right dome of diaphragm +subset: human_subset +subset: mouse_subset synonym: "right dome of diaphragm viewed radiologically" EXACT [FMA:13333] xref: EMAPA:25048 xref: FMA:13333 @@ -285568,6 +295381,8 @@ is_a: UBERON:0007145 ! dome of diaphragm id: UBERON:0007168 name: long head of biceps brachii def: "The long head originates on the supraglenoid tubercle just above the shoulder joint from where its tendon passes down along the intertubercular groove of the humerus into the joint capsule of the shoulder joint. [1] When the humerus is in motion, the tendon of the long head is held firmly in place in the intertubercular groove by the greater and lesser tubercles and the overlying transverse humeral ligament. During the motion from external to internal rotation, the tendon is forced medially against the lesser tubercle and superiorly against the transverse ligament." [Wikipedia:Biceps_brachii_muscle#Origin_and_insertion] +subset: human_subset +subset: mouse_subset synonym: "capus longum of biceps brachii" RELATED [EMAPA:25054] synonym: "caput longum (musculus biceps brachii)" EXACT [FMA:37683] synonym: "caput longum musculus bicipitis brachii" EXACT OMO:0003011 [FMA:37683, FMA:TA] @@ -285583,6 +295398,8 @@ relationship: part_of UBERON:0001507 ! biceps brachii id: UBERON:0007169 name: short head of biceps brachii def: "Proximally (towards the body), the short head of the biceps attaches to (originates from) the coracoid process at the top of the scapula." [Wikipedia:Biceps_brachii_muscle#Origin_and_insertion] +subset: human_subset +subset: mouse_subset synonym: "caput breve (musculus biceps brachii)" EXACT OMO:0003011 [FMA:37682, FMA:TA] synonym: "caput breve musculus bicipitis brachii" EXACT OMO:0003011 [FMA:37682, FMA:TA] synonym: "caput breve of biceps bracii" RELATED [EMAPA:25055] @@ -285598,6 +295415,8 @@ relationship: part_of UBERON:0001507 ! biceps brachii id: UBERON:0007170 name: squamous part of occipital bone def: "The squama of the occipital bone, situated above and behind the foramen magnum, is curved from above downward and from side to side." [Wikipedia:Squama_occipitalis] +subset: human_subset +subset: mouse_subset synonym: "occipital squama" EXACT [FMA:52860, Wikipedia:Squama_occipitalis] synonym: "squama occipitalis" EXACT [Wikipedia:Squama_occipitalis] synonym: "squama occipitalis" RELATED OMO:0003011 [Wikipedia:Squama_occipitalis] @@ -285613,6 +295432,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bf/Gr [Term] id: UBERON:0007171 name: border of scapula +subset: human_subset +subset: mouse_subset synonym: "scapular border" EXACT [FMA:23797] xref: EMAPA:25124 xref: FMA:23797 @@ -285624,6 +295445,8 @@ relationship: part_of UBERON:0006849 ! scapula [Term] id: UBERON:0007172 name: angle of scapula +subset: human_subset +subset: mouse_subset synonym: "scapular angle" EXACT [FMA:23800] xref: EMAPA:25125 xref: FMA:23800 @@ -285636,6 +295459,8 @@ id: UBERON:0007173 name: lateral border of scapula def: "The lateral border (or axillary border, or margin) is the thickest of the three borders of the scapula. It begins above at the lower margin of the glenoid cavity, and inclines obliquely downward and backward to the inferior angle. Immediately below the glenoid cavity is a rough impression, the infraglenoid tuberosity, about 2.5 cm. in length, which gives origin to the long head of the Triceps brachii; in front of this is a longitudinal groove, which extends as far as the lower third of this border, and affords origin to part of the Subscapularis. The inferior third is thin and sharp, and serves for the attachment of a few fibers of the Teres major behind, and of the Subscapularis in front." [Wikipedia:Lateral_border_of_the_scapula] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "axillary border of scapula" EXACT [FMA:23239] synonym: "lateral border of scapula" EXACT [FMA:23239] synonym: "lateral part of scapula" RELATED [FMA:23239] @@ -285653,6 +295478,8 @@ id: UBERON:0007174 name: medial border of scapula def: "The medial border of the scapula (vertebral border, medial margin) is the longest of the three borders, and extends from the medial to the inferior angle. It is arched, intermediate in thickness between the superior and the axillary borders, and the portion of it above the spine forms an obtuse angle with the part below. This border presents an anterior and a posterior lip, and an intermediate narrow area. The anterior lip affords attachment to the Serratus anterior; the posterior lip, to the Supraspinatus above the spine, the Infraspinatus below; the area between the two lips, to the Levator scapulC& above the triangular surface at the commencement of the spine, to the Rhomboideus minor on the edge of that surface, and to the Rhomboideus major below it; this last is attached by means of a fibrous arch, connected above to the lower part of the triangular surface at the base of the spine, and below to the lower part of the border." [Wikipedia:Medial_border_of_scapula] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "margo medialis (scapula)" EXACT [FMA:23242] synonym: "margo medialis scapulae" EXACT OMO:0003011 [FMA:23242, FMA:TA] synonym: "medial border of the scapula" RELATED [Wikipedia:Medial_border_of_scapula] @@ -285675,6 +295502,8 @@ id: UBERON:0007175 name: inferior angle of scapula def: "An angle of the scapula formed by the union of the vertebral and axillary borders; its dorsal surface affords attachment to the Teres major and frequently to a few fibers of the Latissimus dorsi.[WP,unvetted]." [Wikipedia:Inferior_angle_of_scapula] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "angulus inferior (scapula)" EXACT [FMA:13315] synonym: "angulus inferior scapulae" EXACT OMO:0003011 [Wikipedia:Inferior_angle_of_scapula] xref: EMAPA:25128 @@ -285688,6 +295517,8 @@ id: UBERON:0007176 name: superior angle of scapula def: "An angle of the scapula formed by the junction of the superior and vertebral borders. It is thin, smooth, rounded, inclined somewhat lateralward, and gives attachment to a few fibers of the Levator scapulae[WP,unvetted]." [Wikipedia:Superior_angle_of_scapula] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "angulus superior (scapula)" EXACT [FMA:23248] synonym: "angulus superior scapulae" EXACT OMO:0003011 [Wikipedia:Superior_angle_of_scapula] synonym: "medial angle of scapula" EXACT [Wikipedia:Superior_angle_of_scapula] @@ -285706,6 +295537,8 @@ id: UBERON:0007177 name: lamina propria of mucosa of colon def: "A lamina propria that is part of a colonic mucosa." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "colonic lamina propria" EXACT [FMA:15657] synonym: "lamina propria mucosae of colon" EXACT [FMA:15657] synonym: "lamina propria of colonic mucosa" EXACT [FMA:15657] @@ -285725,6 +295558,8 @@ id: UBERON:0007178 name: muscularis mucosae of colon def: "A muscularis mucosa that is part of a colonic mucosa." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lamina muscularis of colonic mucosa" EXACT [FMA:15656] synonym: "lamina muscularis of colonic mucous membrane" EXACT [FMA:15656] synonym: "muscularis mucosa of colon" EXACT [] @@ -285741,6 +295576,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0007179 name: basal cell layer of urothelium +subset: human_subset +subset: mouse_subset synonym: "basal cell layer of uroepithelium" EXACT [FMA:84154] xref: EMAPA:28806 xref: FMA:84154 @@ -285752,6 +295589,8 @@ relationship: part_of UBERON:0000365 ! urothelium id: UBERON:0007180 name: atretic follicle of ovary subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "atretic follicle" EXACT [FMA:18697] synonym: "folliculus atreticus (ovarium)" EXACT [FMA:18697] xref: EMAPA:29874 @@ -285764,6 +295603,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0007181 name: serosa of infundibulum of uterine tube def: "A serous membrane that is part of a uterine tube infundibulum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "serosa of infundibulum of fallopian tube" EXACT [FMA:18324] synonym: "serosa of infundibulum of oviduct" EXACT [FMA:18324] xref: EMAPA:29903 @@ -285779,6 +295620,8 @@ relationship: part_of UBERON:0003984 ! uterine tube infundibulum id: UBERON:0007182 name: muscle layer of infundibulum of uterine tube def: "A muscle layer that is part of a uterine tube infundibulum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscle layer of infundibulum of fallopian tube" EXACT [FMA:18336] synonym: "muscle layer of infundibulum of oviduct" EXACT [FMA:18336] synonym: "muscularis of infundibulum of uterine tube" EXACT [FMA:18336] @@ -285796,6 +295639,8 @@ relationship: part_of UBERON:0003984 ! uterine tube infundibulum id: UBERON:0007185 name: pericardio-peritoneal canal mesothelium def: "A mesothelium that is part of a pericardio-peritoneal canal." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pericardio-peritoneal canal mehomhelium" RELATED [VHOG:0000447] xref: EHDAA2:0001442 xref: EMAPA:16284 @@ -285810,6 +295655,8 @@ relationship: part_of UBERON:0006275 ! pericardio-peritoneal canal id: UBERON:0007186 name: pericardial visceral mesothelium def: "A visceral mesothelium that is part of a pericardium." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesothelium of visceral pericardium" EXACT [FMA:19741] synonym: "mesothelium of visceral serous pericardium" EXACT [FMA:19741] synonym: "pericardial visceral mehomhelium" RELATED [VHOG:0000778] @@ -285829,6 +295676,8 @@ property_value: homology_notes "Found in all vertebrates, the VP (visceral peric id: UBERON:0007187 name: pericardial parietal mesothelium def: "A parietal mesothelium that is part of a pericardium." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesothelium of parietal pericardium" EXACT [FMA:19742] synonym: "mesothelium of parietal serous pericardium" EXACT [FMA:19742] synonym: "parietal serous pericardium mesothelium" EXACT [FMA:19742] @@ -285846,6 +295695,8 @@ property_value: external_ontology_notes "EMAPA:16588 belongs here on the basis o id: UBERON:0007188 name: mesothelium of serous pericardium def: "A mesothelium that is part of a serous pericardium." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesothelium of pericardium" EXACT [FMA:18149] synonym: "pericardial mesothelium" EXACT [FMA:18149] synonym: "serous pericardium mesothelium" EXACT [FMA:18149] @@ -285861,12 +295712,16 @@ relationship: part_of UBERON:0002357 ! serous pericardium [Term] id: UBERON:0007190 name: paracentral gyrus +subset: human_subset +subset: mouse_subset xref: neuronames:1341 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0007191 name: anterior paracentral gyrus +subset: human_subset +subset: mouse_subset xref: BTO:0005602 xref: FMA:77537 xref: neuronames:1342 @@ -285876,6 +295731,8 @@ disjoint_from: UBERON:0007192 {source="lexical"} ! posterior paracentral gyrus [Term] id: UBERON:0007192 name: posterior paracentral gyrus +subset: human_subset +subset: mouse_subset xref: BTO:0005603 xref: FMA:77538 xref: neuronames:1343 @@ -285885,6 +295742,8 @@ is_a: UBERON:0007190 ! paracentral gyrus id: UBERON:0007193 name: orbital gyrus def: "The inferior or orbital surface of the frontal lobe is concave, and rests on the orbital plate of the frontal bone. It is divided into four orbital gyri by a well-marked H-shaped orbital sulcus. These are named, from their position, the medial, anterior, lateral, and posterior orbital gyri. The medial orbital gyrus presents a well-marked antero-posterior sulcus, the olfactory sulcus, for the olfactory tract; the portion medial to this is named the straight gyrus, and is continuous with the superior frontal gyrus on the medial surface." [Wikipedia:Orbital_gyri] +subset: human_subset +subset: mouse_subset synonym: "gyrus orbitales" RELATED OMO:0003011 [Wikipedia:Orbital_gyri] synonym: "orbital gyri" EXACT OMO:0003004 [Wikipedia:Orbital_gyri] xref: BAMS:OrG @@ -285900,6 +295759,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b1/Hu id: UBERON:0007194 name: vesicular gland def: "The vesicular gland is part of the male reproductive system. The vesicular gland contributes fluids, energy substrates, and buffers to semen. It can be found near the Coagulating gland, which also belongs to the reproductive system." [BTO:0003717] +subset: human_subset +subset: mouse_subset xref: BTO:0003717 xref: EMAPA:19180 xref: MA:0000405 @@ -285913,6 +295774,8 @@ property_value: taxon_notes "bipartite seminal vesicles, with a seminal gland an id: UBERON:0007195 name: stroma of bone marrow def: "The stroma of the bone marrow is all tissue not directly involved in the primary function of hematopoiesis. The yellow bone marrow belongs here, and makes the majority of the bone marrow stroma, in addition to stromal cells located in the red bone marrow. Yellow bone marrow is found in the Medullary cavity. Still, the stroma is indirectly involved in hematopoiesis, since it provides the hematopoietic microenvironment that facilitates hematopoiesis by the parenchymal cells. For instance, they generate colony stimulating factors, affecting hematopoiesis." [Wikipedia:Bone_marrow#Stroma] +subset: human_subset +subset: mouse_subset synonym: "bone marrow stroma" EXACT [FMA:21426] xref: CALOHA:TS-0085 xref: FMA:21426 @@ -285932,6 +295795,8 @@ name: tracheobronchial tree alt_id: UBERON:0004102 def: "The structure from the trachea, bronchi, and bronchioles that forms the airways that supply air to the lungs. The lining of the tracheobronchial tree consists of ciliated columnar epithelial cells." [Wikipedia:Tracheobronchial_tree] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "arbor tracheobronchialis" EXACT OMO:0003011 [FMA:7393, FMA:TA] @@ -285952,6 +295817,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0007197 name: hermaphroditic organism def: "Multicellular organism that can produce both male and female gametes." [http://orcid.org/0000-0001-9114-8737] +subset: human_subset +subset: mouse_subset synonym: "dioecious organism" RELATED [BILA:0000029] synonym: "hermaphrodite" RELATED [WBbt:0007849] xref: AAO:0010035 @@ -285966,6 +295833,8 @@ is_a: UBERON:0000468 ! multicellular organism id: UBERON:0007198 name: hermaphrodite anatomical structure def: "An anatomical structure present only in hermaphrodites." [https://orcid.org/0000-0002-4422-9726] +subset: human_subset +subset: mouse_subset synonym: "hermaphrodite-specific" RELATED [WBbt:0005758] xref: AEO:0000177 xref: EHDAA2:0003177 @@ -285979,6 +295848,8 @@ relationship: part_of UBERON:0007197 ! hermaphroditic organism id: UBERON:0007204 name: brachiocephalic vasculature def: "The vasculature consisting of brachiocephalic arteries and veins." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002049 ! vasculature [Term] @@ -285986,6 +295857,8 @@ id: UBERON:0007213 name: mesenchyme derived from head neural crest def: "Mesenchyme that develops_from a cranial neural crest." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "head mesenchyme from cranial neural crest" EXACT [] synonym: "head mesenchyme from neural crest" EXACT [EHDAA2:0000735] @@ -286007,6 +295880,8 @@ relationship: develops_from UBERON:0003099 ! cranial neural crest id: UBERON:0007214 name: mesenchyme derived from trunk neural crest def: "Mesenchyme that develops_from a trunk neural crest." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "trunk mesenchyme from neural crest" EXACT [EHDAA2:0002093] synonym: "trunk neural crest derived mesenchyme" EXACT [] @@ -286025,6 +295900,8 @@ id: UBERON:0007215 name: trabecula cranii def: "Paired thin medially aligned bar of cartilage that extends from the anterior end of the chondrocranium to just anterior to the anterior end of the notochord. The posterior ends of the trabeculae cranii are continuous with the parachordal cartilages, and they enclose the hypophyseal fenestra." [ZFIN:curator] comment: A paired cartilage element appearing in the preotic section of the head at the border between the brain and visceral structures (The Trabecula cranii: development and homology of an enigmatic vertebrate head structure - Cerny et al 2006) +subset: human_subset +subset: mouse_subset synonym: "trabeculae cranii" EXACT OMO:0003004 [ZFA:0001507] xref: TAO:0001507 xref: ZFA:0001507 @@ -286035,6 +295912,8 @@ relationship: part_of UBERON:0005945 ! neurocranial trabecula id: UBERON:0007220 name: late embryonic stage def: "An embryo stage that covers late steps of the embryogenesis with a fully formed embryo still developing before birth or egg hatching." [https://orcid.org/0000-0003-3308-6245] +subset: human_subset +subset: mouse_subset synonym: "embryo late (growth) stage" EXACT [MIAA:0000399] synonym: "embryo late growth stage" RELATED [BTO:0000449] synonym: "embryo late stage" RELATED [BTO:0000449] @@ -286061,6 +295940,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/565" xsd: id: UBERON:0007221 name: neonate stage def: "Of or pertaining to the period of time immediately following birth, or to the newborn." [http://en.wiktionary.org/wiki/neonatal, Wikipedia:Infant] +subset: human_subset +subset: mouse_subset synonym: "fledgling stage" NARROW SENSU [https://orcid.org/0000-0002-6601-2165] synonym: "hatchling" NARROW SENSU [https://orcid.org/0000-0002-6601-2165] synonym: "hatchling stage" NARROW SENSU [https://orcid.org/0000-0002-6601-2165] @@ -286089,6 +295970,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/350" xsd: [Term] id: UBERON:0007222 name: late adult stage +subset: human_subset +subset: mouse_subset synonym: "elderly" RELATED [EV:0300123] synonym: "elderly stage" RELATED [EV:0300123] synonym: "geriatric" RELATED [EV:0300123] @@ -286107,6 +295990,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/495" xsd: id: UBERON:0007223 name: osseus cochlea def: "The osseous cochlea is the bony foundation that forms the small shell arrangement for the cochlear nerve." [http://www.innerbody.com/image_nerv14/nerv175.html] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:35620 xref: MA:0000239 @@ -286120,6 +296005,8 @@ id: UBERON:0007224 name: medial entorhinal cortex def: "One of two subdivisions of the entorhinal cortex, located medially." [NeuroNames:1113, UBERON:cjm] comment: Connectivity notes: The medial entorhinal cortex preferentially connects with the postrhinal cortex, the presubiculum, visual association (occipital) and retrosplenial cortices[http://www.scholarpedia.org/article/Entorhinal_cortex] +subset: human_subset +subset: mouse_subset synonym: "entorhinal area, medial part" EXACT [] synonym: "MEC" BROAD OMO:0003000 [http://www.scholarpedia.org/article/Entorhinal_cortex] xref: BAMS:MEnt @@ -286140,6 +296027,8 @@ id: UBERON:0007225 name: lateral entorhinal cortex def: "One of two subdivisions of the entorhinal cortex, located laterally." [NeuroNames:1113, UBERON:cjm] comment: Connectivity notes: The lateral entorhinal cortex, for example, is strongly connected to the perirhinal cortex, olfactory and insular cortex and the amygdala.[http://www.scholarpedia.org/article/Entorhinal_cortex] +subset: human_subset +subset: mouse_subset synonym: "entorhinal area, lateral part" EXACT [ABA:ENTl] synonym: "entorhinal cortex lateral part" RELATED [BAMS:ENTl] synonym: "LEC" BROAD OMO:0003000 [http://www.scholarpedia.org/article/Entorhinal_cortex] @@ -286162,6 +296051,8 @@ relationship: part_of UBERON:0002895 {source="MA"} ! secondary olfactory cortex id: UBERON:0007227 name: superior vestibular nucleus def: "The superior vestibular nucleus is the dorso-lateral part of the vestibular nucleus and receives collaterals and terminals from the ascending branches of the vestibular nerve. Its axons terminate in much the same manner as do those from the lateral nucleus." [Wikipedia:Superior_vestibular_nucleus] +subset: human_subset +subset: mouse_subset synonym: "Bechterew's nucleus" RELATED [Wikipedia:Superior_vestibular_nucleus] synonym: "Bekhterevs nucleus" RELATED [BTO:0004372] synonym: "nucleus of Bechterew" EXACT [FMA:54617] @@ -286193,6 +296084,8 @@ name: vestibular nucleus def: "A cranial nucleus for the vestibular nerve. [WP,unvetted]." [http://www.sciencedirect.com/science/article/pii/S0079612305510069, https://github.com/geneontology/go-ontology/issues/9028, Wikipedia:Vestibular_nuclei] comment: See comments for 'vestibular nuclear complex. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "vestibular nucleus of acoustic nerve" EXACT [FMA:54602] synonym: "vestibular nucleus of eighth cranial nerve" EXACT [FMA:54602] synonym: "vestibular VIII nucleus" EXACT [MA:0001032] @@ -286217,6 +296110,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Gr id: UBERON:0007230 name: lateral vestibular nucleus def: "One of the nuclei comprising the vestibular nuclear complex. In some mammals, e.g., primates, it is further subdivided into subnuclei. It therefore differs in appearance and topology in different mammals." [NLX:144002] +subset: human_subset +subset: mouse_subset synonym: "Deiter's nucleus" EXACT [FMA:54614] synonym: "Deiters nucleus" RELATED [BTO:0004370] synonym: "Deiters' nucleus" EXACT [FMA:54614] @@ -286250,6 +296145,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gr [Term] id: UBERON:0007232 name: 2 cell stage +subset: human_subset +subset: mouse_subset synonym: "2-cell stage" EXACT [XAO:1000011] synonym: "Cleavage:2-cell" NARROW [ZFS:0000002] synonym: "NF stage 2 (2-cell)" NARROW SENSU [XAO:1000011] @@ -286264,6 +296161,8 @@ relationship: part_of UBERON:0000107 ! cleavage stage [Term] id: UBERON:0007233 name: 4 cell stage +subset: human_subset +subset: mouse_subset synonym: "4-cell stage" EXACT [XAO:1000013] synonym: "Cleavage:4-cell" NARROW [ZFS:0000003] synonym: "four-cell stage" EXACT [OBOL:automatic] @@ -286284,6 +296183,8 @@ consider: UBERON:0019250 [Term] id: UBERON:0007236 name: 8 cell stage +subset: human_subset +subset: mouse_subset synonym: "8-cell stage" EXACT [XAO:1000014] synonym: "Cleavage:8-cell" NARROW [ZFS:0000004] synonym: "eight-cell stage" EXACT [OBOL:automatic] @@ -286298,6 +296199,8 @@ relationship: part_of UBERON:0000107 ! cleavage stage [Term] id: UBERON:0007237 name: 1st arch mandibular component +subset: human_subset +subset: mouse_subset synonym: "ventral mandibular arch" RELATED [VHOG:0000510] synonym: "ventral pharyngeal arch 1" EXACT [VHOG:0000510] synonym: "ventral visceral arch 1" RELATED [VHOG:0000510] @@ -286314,6 +296217,8 @@ property_value: homology_notes "Subsequent vertebrate evolution has also involve [Term] id: UBERON:0007238 name: 1st arch maxillary component +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000038 xref: EHDAA:595 xref: EMAPA:16388 @@ -286327,6 +296232,8 @@ property_value: homology_notes "Subsequent vertebrate evolution has also involve id: UBERON:0007239 name: tunica media of artery def: "A tunica media that is part of a artery." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arterial media" EXACT [EV:0100029] synonym: "tunica media (arteriae)" EXACT [FMA:14273] xref: EMAPA:36294 @@ -286345,6 +296252,8 @@ relationship: part_of UBERON:0001637 ! artery id: UBERON:0007240 name: tunica adventitia of artery def: "A tunica adventitia that is part of a artery." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arterial adventitia" EXACT [EV:0100030] synonym: "tunica externa (adventitia)(arteriae)" EXACT [FMA:14274] xref: EMAPA:36295 @@ -286362,6 +296271,8 @@ relationship: part_of UBERON:0001637 ! artery id: UBERON:0007241 name: tunica adventitia of vein def: "A tunica adventitia that is part of a vein." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "tunica externa (adventitia)(venae)" EXACT [FMA:14355] synonym: "venous adventitia" EXACT [EV:0100034] xref: EMAPA:36310 @@ -286377,6 +296288,8 @@ relationship: part_of UBERON:0001638 ! vein id: UBERON:0007242 name: tunica intima of vein def: "A tunica intima that is part of a vein." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "tunica interna (intima)(venae)" EXACT [FMA:14353] synonym: "venous intima" EXACT [EV:0100032] xref: EMAPA:36308 @@ -286393,6 +296306,8 @@ relationship: part_of UBERON:0001638 ! vein id: UBERON:0007243 name: tunica media of vein def: "A tunica media that is part of a vein." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "tunica media (venae)" EXACT [FMA:14354] synonym: "venous media" EXACT [EV:0100033] xref: EMAPA:36309 @@ -286408,6 +296323,8 @@ relationship: part_of UBERON:0001638 ! vein id: UBERON:0007244 name: inferior olivary nucleus def: "The inferior olivary nucleus is the largest nucleus situated in the olivary body, part of the medulla oblongata." [Wikipedia:Inferior_olivary_nucleus] +subset: human_subset +subset: mouse_subset synonym: "inferior olive" RELATED [Wikipedia:Inferior_olivary_nucleus] xref: BTO:0003844 xref: CALOHA:TS-2383 @@ -286424,6 +296341,8 @@ relationship: part_of UBERON:0002127 ! inferior olivary complex id: UBERON:0007245 name: nuclear complex of neuraxis def: "Gray matter of the central nervous system which is a collection of clustered nuclei." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "cluster of neural nuclei" RELATED [] synonym: "neural nuclei" RELATED [] synonym: "nuclear complex" RELATED [] @@ -286439,6 +296358,8 @@ id: UBERON:0007247 name: nucleus of superior olivary complex def: "Any of the nuclei that comprise the superior olivary complex (superior olive). This includes both the primary nuclei such as the lateral and medial nuclei, as well as periolivary nuclei." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "superior olivary complex nucleus" EXACT [FMA:72246] xref: FMA:72246 @@ -286455,6 +296376,8 @@ id: UBERON:0007249 name: dorsal accessory inferior olivary nucleus alt_id: UBERON:0014288 def: "The inferior olivary nucleus that is the smallest, and appears on transverse section as a curved lamina behind the primary olivary nucleus." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Olivary_body#Olivary_nuclei] +subset: human_subset +subset: mouse_subset synonym: "DAO" EXACT OMO:0003000 [NLXANAT:100310] synonym: "dorsal accessory olivary nucleus" EXACT [FMA:72593] synonym: "dorsal accessory olive" EXACT [NLXANAT:100310] @@ -286480,6 +296403,8 @@ is_a: UBERON:0007244 ! inferior olivary nucleus id: UBERON:0007250 name: lingual tonsil def: "The lymph tissue on the floor of the oropharyngeal passage, near the root of the tongue." [MGI:cwg, MP:0002385] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lingual tonsillar tissue" EXACT [MA:0000773] synonym: "tonsilla lingualis" RELATED OMO:0003011 [Wikipedia:Lingual_tonsils] @@ -286501,6 +296426,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/4/4c/I id: UBERON:0007251 name: preoptic nucleus def: "A nucleus of brain that is part of a preoptic area." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: CALOHA:TS-0822 xref: EV:0100226 xref: MESH:D011301 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} @@ -286514,6 +296441,8 @@ relationship: present_in_taxon NCBITaxon:117569 {source="Hardisty, p. 320-1"} ! id: UBERON:0007252 name: intervertebral disk of cervical vertebra def: "An intervertebral disk that is part of a cervical region of vertebral column. A cervical intervertebral disk connects at least one cervical vertebra, either to another cervical vertebra, or at one point on the vertebral colummn, to a thoracic vertebra." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "cervical intervertebral disc" EXACT [FMA:13895] synonym: "intervertebral disc of cervical region" EXACT [EMAPA:19415] xref: EMAPA:19415 @@ -286531,6 +296460,8 @@ relationship: part_of UBERON:0006072 ! cervical region of vertebral column id: UBERON:0007254 name: intervertebral disk of thoracic vertebra def: "An intervertebral disk that is part of a thoracic region of vertebral column. A thoracic intervertebral disk connects at least one thoracic vertebra, either to another thoracic vertebra, or at one point on the vertebral colummn, to a lumbar vertebra." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "intervertebral disc of thoracic region" EXACT [EMAPA:19489] xref: EMAPA:19489 xref: FMA:10455 @@ -286546,6 +296477,8 @@ relationship: part_of UBERON:0006073 ! thoracic region of vertebral column id: UBERON:0007255 name: intervertebral disk of lumbar vertebra def: "An intervertebral disk that is part of a lumbar region of vertebral column. A lumbar intervertebral disk connects at least one lumbar vertebra, either to another thoracic vertebra, or at one point on the vertebral colummn, to a sacral vertebra." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "intervertebral disc of lumbar region" EXACT [EMAPA:19468] xref: EMAPA:19468 xref: FMA:13894 @@ -286561,6 +296494,8 @@ relationship: part_of UBERON:0006074 ! lumbar region of vertebral column id: UBERON:0007257 name: intervertebral disk of sacral vertebra def: "An intervertebral disk that is part of a sacral region of vertebral column. A sacral intervertebral disk connects at least one sacral vertebra, either to another thoracic vertebra, or at one point on the vertebral colummn, to a sacral vertebra." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "intervertebral disc of sacral region" EXACT [EMAPA:19575] xref: EMAPA:19575 xref: FMA:268676 @@ -286576,6 +296511,8 @@ relationship: part_of UBERON:0006075 ! sacral region of vertebral column id: UBERON:0007260 name: intervertebral disk of third cervical vertebra def: "An intervertebral disk that connects a mammalian cervical vertebra 3 and connects a mammalian cervical vertebra 4." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "C3 intervertebral disk" EXACT [FMA:13896] synonym: "intervertebral disk, C3-C4" EXACT [FMA:13896] xref: EMAPA:19422 @@ -286591,6 +296528,8 @@ relationship: connects UBERON:0004613 ! mammalian cervical vertebra 4 id: UBERON:0007261 name: intervertebral disk of fourth cervical vertebra def: "An intervertebral disk that connects a mammalian cervical vertebra 4 and connects a mammalian cervical vertebra 5." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "intervertebral disc of fourth cervical vertebra" EXACT [FMA:13897] synonym: "intervertebral disk, C4-C5" EXACT [FMA:13897] xref: EMAPA:19425 @@ -286607,6 +296546,8 @@ relationship: connects UBERON:0004614 ! mammalian cervical vertebra 5 id: UBERON:0007262 name: intervertebral disk of fifth cervical vertebra def: "An intervertebral disk that connects a mammalian cervical vertebra 5 and connects a mammalian cervical vertebra 6." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "intervertebral disc of fifth cervical vertebra" EXACT [FMA:13898] synonym: "intervertebral disk, C5-C6" EXACT [FMA:13898] xref: EMAPA:19428 @@ -286623,6 +296564,8 @@ relationship: connects UBERON:0004615 ! mammalian cervical vertebra 6 id: UBERON:0007263 name: intervertebral disk of sixth cervical vertebra def: "An intervertebral disk that connects a mammalian cervical vertebra 6 and connects a mammalian cervical vertebra 7." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "intervertebral disk, C6-C7" EXACT [FMA:13899] xref: EMAPA:19460 xref: FMA:13899 @@ -286637,6 +296580,8 @@ relationship: connects UBERON:0004616 ! mammalian cervical vertebra 7 id: UBERON:0007264 name: intervertebral disk of seventh cervical vertebra def: "An intervertebral disk that connects a thoracic vertebra and connects a mammalian cervical vertebra 7." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "intervertebral disk, C7-T1" EXACT [FMA:13900] xref: EMAPA:19463 xref: FMA:13900 @@ -286651,6 +296596,8 @@ relationship: connects UBERON:0004616 ! mammalian cervical vertebra 7 id: UBERON:0007265 name: intervertebral disk of axis def: "An intervertebral disk that connects a vertebral bone 2 and connects a mammalian cervical vertebra 3." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "C2 disk" EXACT [FMA:25058] synonym: "C2 intervertebral disk" EXACT [FMA:25058] synonym: "intervertebral disc of cervical vertebra 2" EXACT [FMA:25058] @@ -286672,6 +296619,8 @@ relationship: connects UBERON:0004612 ! mammalian cervical vertebra 3 id: UBERON:0007266 name: intervertebral disk of atlas def: "An intervertebral disk that connects a vertebral bone 1 and connects a vertebral bone 2." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "C1 disk" EXACT [] synonym: "C1 intervertebral disk" EXACT [] synonym: "first cervical intervertebral disk" EXACT [] @@ -286692,6 +296641,8 @@ relationship: connects UBERON:0001093 ! vertebral bone 2 id: UBERON:0007267 name: trachea pre-cartilage rings def: "A pre-cartilage condensation that is part of a trachea." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0002070 xref: EHDAA:7082 is_a: UBERON:0005866 ! pre-cartilage condensation @@ -286705,6 +296656,8 @@ relationship: part_of UBERON:0003126 ! trachea id: UBERON:0007268 name: upper esophageal sphincter def: "The upper esophageal sphincter (UES) (also called the Pharyngoesophageal sphincter) refers to the superior portion of the esophagus. Unlike the lower esophageal sphincter, it consists of striated muscle and is under conscious control. The primary muscle of the UES is the cricopharyngeus portion of the inferior pharyngeal constrictor. During swallowing the upper esophageal sphincter opens so the bolus can pass into the esophagus. A secondary role of the UES is to reduce backflow from the esophagus into the pharynx." [Wikipedia:Upper_esophageal_sphincter] +subset: human_subset +subset: mouse_subset synonym: "pharyngoesophageal sphincter" EXACT [Wikipedia:Upper_esophageal_sphincter] synonym: "upper esophageal sphincter muscle" EXACT [] synonym: "upper oesophageal sphincter" EXACT [Wikipedia:Upper_esophageal_sphincter] @@ -286723,6 +296676,8 @@ id: UBERON:0007269 name: pectoral appendage musculature def: "Any collection of muscles that is part of a pectoral appendage." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "pectoral fin muscle" NARROW [ZFA:0000563] synonym: "pectoral fin musculature" NARROW SENSU [ZFA:0000563] xref: EFO:0003540 @@ -286739,6 +296694,8 @@ property_value: editor_note "currently defined by location rather than attachmen id: UBERON:0007270 name: pelvic appendage musculature def: "Any collection of muscles that is part of a pelvic appendage." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pelvic fin musculature" NARROW SENSU [ZFA:0000258] xref: TAO:0000258 xref: ZFA:0000258 @@ -286754,6 +296711,8 @@ property_value: external_definition "Musculature that is part of the pelvic fin. id: UBERON:0007271 name: appendage musculature def: "Any collection of muscles that is part of an appendage." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fin musculature" NARROW SENSU [ZFA:0000207] xref: TAO:0000207 xref: ZFA:0000207 @@ -286767,6 +296726,8 @@ property_value: editor_note "currently defined by location rather than attachmen id: UBERON:0007272 name: pectoral appendage skeleton def: "Skeletal subdivision consisting of the anterior appendicular limb skeleton, excluding the pectoral girdle." [VSAO:0005000, VSAO:NI] +subset: human_subset +subset: mouse_subset synonym: "cheiropterygium" RELATED [VSAO:0005000, VSAO:NI] xref: VSAO:0005000 is_a: UBERON:0011582 ! paired limb/fin skeleton @@ -286781,6 +296742,8 @@ relationship: skeleton_of UBERON:0004710 ! pectoral appendage id: UBERON:0007273 name: pelvic appendage skeleton def: "The collection of all skeletal elements in a pelvic appendage region." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011582 ! paired limb/fin skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0004709 ! pelvic appendage @@ -286792,6 +296755,8 @@ relationship: skeleton_of UBERON:0004709 ! pelvic appendage id: UBERON:0007274 name: crista of ampulla of anterior semicircular duct of membranous laybrinth def: "A crista ampullaris neuroepithelium that is part of a anterior semicircular duct." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "AC" RELATED [TAO:0000619] synonym: "anterior crista" RELATED [TAO:0000619] @@ -286819,6 +296784,8 @@ property_value: external_definition "Patches of thickened, pseudostratified epit id: UBERON:0007275 name: crista of ampulla of posterior semicircular duct of membranous laybrinth def: "A crista ampullaris neuroepithelium that is part of a posterior semicircular duct." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "caudal crista" EXACT [ZFA:0000566] synonym: "PC" RELATED [TAO:0000566] @@ -286844,6 +296811,8 @@ property_value: external_definition "Patches of thickened, pseudostratified epit id: UBERON:0007276 name: crista of ampulla of lateral semicircular duct of membranous laybrinth def: "A crista ampullaris neuroepithelium that is part of a lateral semicircular duct." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "lateral crista" RELATED [TAO:0000166] synonym: "lateral crista ampullaris" EXACT [ZFA:0000166] @@ -286868,6 +296837,8 @@ id: UBERON:0007277 name: presumptive hindbrain def: "The rhombencephalon (or hindbrain) is a developmental categorization of portions of the central nervous system in vertebrates. The rhombencephalon can be subdivided in a variable number of transversal swellings called rhombomeres. In the human embryo eight rhombomeres can be distinguished, from caudal to rostral: Rh7-Rh1 and the isthmus (the most rostral rhombomere). A rare disease of the rhombencephalon, 'rhombencephalosynapsis' is characterized by a missing vermis resulting in a fused cerebellum. Patients generally present with cerebellar ataxia. The caudal rhombencephalon has been generally considered as the initiation site for neural tube closure." [Wikipedia:Rhombencephalon] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "embryonic rhombencephalon" RELATED [CALOHA:TS-2118] synonym: "future hindbrain" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "presumptive rhombencephalon" EXACT [ZFA:0000569] @@ -286894,6 +296865,8 @@ property_value: external_definition "The embryonic rhombencephalon can be subdiv id: UBERON:0007278 name: presumptive sinus venosus def: "Portion of tissue that is part of the heart tube and will become the sinus venosus." [ZFA:0001722] +subset: human_subset +subset: mouse_subset xref: TAO:0002234 xref: ZFA:0001722 is_a: UBERON:0006598 ! presumptive structure @@ -286906,6 +296879,8 @@ relationship: part_of UBERON:0004141 {source="ZFA"} ! heart tube id: UBERON:0007279 name: presumptive atrioventricular canal def: "A presumptive structure that has the potential to develop into a atrioventricular canal." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "future atrioventricular canal" EXACT [] synonym: "future AV canal" EXACT [] xref: TAO:0002227 @@ -286921,6 +296896,8 @@ property_value: external_definition "Portion of tissue that is part of the heart id: UBERON:0007280 name: presumptive endocardium def: "A presumptive structure that has the potential to develop into a endocardium." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: TAO:0002233 xref: ZFA:0001724 is_a: UBERON:0006598 ! presumptive structure @@ -286936,6 +296913,8 @@ id: UBERON:0007281 name: presumptive midbrain hindbrain boundary def: "Embryonic structure that gives rise to the midbrain hindbrain boundary." [ZFA:0001187] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "presumptive MHB" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "presumptive midbrain-hindbrain boundary" EXACT [ZFA:0001187] xref: EFO:0003446 @@ -286953,6 +296932,8 @@ id: UBERON:0007282 name: presumptive segmental plate def: "A presumptive structure that has the potential to develop into a presomitic mesoderm." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "presumptive segmental plates" RELATED OMO:0003004 [ZFA:0000053] xref: EFO:0003421 xref: TAO:0000053 @@ -286968,6 +296949,8 @@ id: UBERON:0007283 name: presumptive shield def: "A presumptive structure that has the potential to develop into a primitive knot." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset xref: EFO:0003444 xref: TAO:0001121 xref: ZFA:0001121 @@ -286982,6 +296965,8 @@ id: UBERON:0007284 name: presumptive neural plate def: "A presumptive structure that has the potential to develop into a neural plate." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "prospective neuroectoderm" EXACT [ZFA:0000063] synonym: "prospective vegetal ectoderm" EXACT [ZFA:0000063] xref: EFO:0003424 @@ -287001,6 +296986,8 @@ id: UBERON:0007285 name: presumptive paraxial mesoderm def: "The part of the blastula that has the potential to develop into a paraxial mesoderm." [https://github.com/obophenotype/uberon/issues/1277, UBERON:cjm] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "future paraxial mesenchyme" EXACT [UBERON:cjm] synonym: "future paraxial mesoderm" EXACT [] xref: EFO:0003443 @@ -287019,6 +297006,8 @@ id: UBERON:0007286 name: presumptive floor plate def: "A presumptive structure that has the potential to develop into a floor plate." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset xref: EFO:0003454 xref: TAO:0001218 xref: ZFA:0001218 @@ -287031,6 +297020,8 @@ relationship: has_potential_to_develop_into UBERON:0003079 ! floor plate id: UBERON:0007287 name: presumptive bulbus arteriosus def: "A presumptive structure that has the potential to develop into a bulbus arteriosus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: TAO:0002230 xref: ZFA:0001712 is_a: UBERON:0006598 ! presumptive structure @@ -287044,6 +297035,8 @@ id: UBERON:0007288 name: presumptive forebrain midbrain boundary def: "A presumptive structure that has the potential to develop into a forebrain-midbrain boundary." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset xref: EFO:0003463 xref: TAO:0001368 xref: ZFA:0001368 @@ -287057,6 +297050,8 @@ relationship: part_of UBERON:0006238 ! future brain id: UBERON:0007289 name: presumptive rhombomere 1 def: "A presumptive structure that has the potential to develop into a rhombomere 1." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: TAO:0001207 xref: ZFA:0001207 is_a: UBERON:0006598 ! presumptive structure @@ -287069,6 +297064,8 @@ id: UBERON:0007290 name: presumptive rhombomere 3 def: "A presumptive structure that has the potential to develop into a rhombomere 3." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset xref: EFO:0003451 xref: TAO:0001213 xref: ZFA:0001213 @@ -287082,6 +297079,8 @@ id: UBERON:0007291 name: presumptive rhombomere 4 def: "A presumptive structure that has the potential to develop into a rhombomere 4." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset xref: EFO:0003450 xref: TAO:0001212 xref: ZFA:0001212 @@ -287095,6 +297094,8 @@ id: UBERON:0007292 name: presumptive rhombomere 5 def: "A presumptive structure that has the potential to develop into a rhombomere 5." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset xref: EFO:0003449 xref: TAO:0001211 xref: ZFA:0001211 @@ -287108,6 +297109,8 @@ id: UBERON:0007293 name: presumptive rhombomere 6 def: "A presumptive structure that has the potential to develop into a rhombomere 6." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset xref: EFO:0003448 xref: TAO:0001210 xref: ZFA:0001210 @@ -287121,6 +297124,8 @@ id: UBERON:0007294 name: presumptive rhombomere 7 def: "A presumptive structure that has the potential to develop into a rhombomere 7." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset xref: EFO:0003447 xref: TAO:0001209 xref: ZFA:0001209 @@ -287134,6 +297139,8 @@ id: UBERON:0007295 name: presumptive rhombomere 8 def: "A presumptive structure that has the potential to develop into a rhombomere 8." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset xref: EFO:0003452 xref: TAO:0001214 xref: ZFA:0001214 @@ -287146,6 +297153,8 @@ relationship: has_potential_to_develop_into UBERON:0005527 ! rhombomere 8 id: UBERON:0007296 name: presumptive rhombomere 2 def: "A presumptive structure that has the potential to develop into a rhombomere 2." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: TAO:0001208 xref: ZFA:0001208 is_a: UBERON:0006598 ! presumptive structure @@ -287158,6 +297167,8 @@ id: UBERON:0007297 name: presumptive pronephric mesoderm def: "A presumptive structure that has the potential to develop into a pronephric mesoderm." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "nephron primordium" EXACT [ZFA:0001070] xref: EFO:0003619 xref: TAO:0001070 @@ -287171,6 +297182,8 @@ relationship: has_potential_to_develop_into UBERON:0005721 ! pronephric mesoderm id: UBERON:0007298 name: pronephric proximal convoluted tubule def: "A proximal convoluted tubule that is part of a pronephros." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: TAO:0002238 xref: ZFA:0001620 is_a: UBERON:0001287 ! proximal convoluted tubule @@ -287184,6 +297197,8 @@ relationship: part_of UBERON:0005309 {source="https://github.com/obophenotype/ub id: UBERON:0007299 name: choroid plexus of tectal ventricle def: "A choroid plexus that is part of a cerebral aqueduct." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "choroid plexus tectal ventricle" EXACT [ZFA:0001445] synonym: "choroid plexus tectal ventricles" RELATED OMO:0003004 [ZFA:0001445] xref: TAO:0001445 @@ -287197,6 +297212,8 @@ relationship: part_of UBERON:0002289 ! midbrain cerebral aqueduct id: UBERON:0007300 name: pectoral appendage blood vessel def: "A blood vessel that is part of a pectoral appendage." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pectoral fin blood vessel" NARROW SENSU [ZFA:0005301] xref: TAO:0005301 xref: ZFA:0005301 @@ -287209,6 +297226,8 @@ relationship: part_of UBERON:0004710 ! pectoral appendage id: UBERON:0007301 name: appendage blood vessel def: "A blood vessel that is part of a limb/fin." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fin blood vessel" NARROW SENSU [ZFA:0005299] synonym: "limb blood vessel" NARROW SENSU [] xref: TAO:0005299 @@ -287223,6 +297242,8 @@ relationship: part_of UBERON:0007304 ! appendage vasculature id: UBERON:0007302 name: pectoral appendage vasculature def: "A vasculature that is part of a pectoral appendage." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pectoral fin vasculature" NARROW SENSU [ZFA:0005096] xref: TAO:0005096 xref: ZFA:0005096 @@ -287235,6 +297256,8 @@ relationship: part_of UBERON:0004710 ! pectoral appendage id: UBERON:0007303 name: pharyngeal vasculature def: "A vasculature that is part of a chordate pharynx." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "branchial vasculature" EXACT [ZFA:0005003] xref: TAO:0005003 xref: ZFA:0005003 @@ -287247,6 +297270,8 @@ relationship: part_of UBERON:0001042 ! chordate pharynx id: UBERON:0007304 name: appendage vasculature def: "A vasculature that is part of a limb/fin." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fin vasculature" NARROW SENSU [ZFA:0005095] xref: TAO:0005095 xref: ZFA:0005095 @@ -287259,6 +297284,8 @@ relationship: part_of UBERON:0000026 ! appendage id: UBERON:0007306 name: pronephric glomerular capillary def: "A glomerular capillary that is part of a pronephros." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: TAO:0005309 xref: ZFA:0005309 is_a: UBERON:0004212 ! glomerular capillary @@ -287272,6 +297299,8 @@ relationship: part_of UBERON:0005309 {source="https://github.com/obophenotype/ub id: UBERON:0007307 name: pronephric glomerular basement membrane def: "A glomerular basement membrane that is part of a pronephros." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pronephric glomerular filtration membrane" EXACT [ZFA:0005313] xref: TAO:0005313 xref: ZFA:0005313 @@ -287285,6 +297314,8 @@ relationship: part_of UBERON:0004739 {is_inferred="true", source="https://github id: UBERON:0007308 name: pronephric distal early tubule def: "A distal early tubule that is part of a pronephros." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pronephric distal early tubules" RELATED OMO:0003004 [ZFA:0001622] xref: TAO:0002236 xref: ZFA:0001622 @@ -287299,6 +297330,8 @@ relationship: part_of UBERON:0005309 {source="https://github.com/obophenotype/ub id: UBERON:0007311 name: sputum def: "Matter ejected from the lungs, bronchi, and trachea, through the mouth." [Dorlands_Medical_Dictionary:MerckSource] +subset: human_subset +subset: mouse_subset synonym: "expectoration" RELATED [BTO:0001297] xref: BTO:0001297 xref: CALOHA:TS-0963 @@ -287316,6 +297349,8 @@ relationship: part_of UBERON:0006524 ! alveolar system id: UBERON:0007312 name: pudendal artery def: "Either the internal or external pudendal arteries." [Wikipedia:Pudendal_artery] +subset: human_subset +subset: mouse_subset synonym: "arteriae pudendae" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "arteriae pudendales" EXACT OMO:0003011 [doi:10.1002/ca.23705] xref: EMAPA:37111 {source="MA:th"} @@ -287327,6 +297362,8 @@ is_a: UBERON:0001637 ! artery [Term] id: UBERON:0007314 name: superior external pudendal artery +subset: human_subset +subset: mouse_subset xref: EMAPA:37119 {source="MA:th"} xref: MA:0002029 is_a: UBERON:0013137 ! external pudendal artery @@ -287336,6 +297373,8 @@ id: UBERON:0007315 name: internal pudendal artery def: "The internal pudendal artery is an artery that branches off the internal iliac artery, providing blood to the external genitalia. The internal pudendal artery is the terminal branch of the anterior trunk of the internal iliac artery. It is smaller in the female than in the male." [Wikipedia:Internal_pudendal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria pudenda interna" EXACT OMO:0003011 [Wikipedia:Internal_pudendal_artery] synonym: "arteriae pudendae interna" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "arteriae pudendales interna" EXACT OMO:0003011 [doi:10.1002/ca.23705] @@ -287360,6 +297399,8 @@ id: UBERON:0007316 name: deep external pudendal artery def: "The deep external pudendal artery (deep external pudic artery), more deeply seated than the superficial external pudendal artery, passes medialward across the Pectineus and the Adductor longus muscles; it is covered by the fascia lata, which it pierces at the medial side of the thigh, and is distributed, in the male, to the integument of the scrotum and perineum, in the female to the labium majus; its branches anastomose with the scrotal (or labial) branches of the perineal artery." [Wikipedia:Deep_external_pudendal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria pudenda externa profunda" EXACT OMO:0003011 [Wikipedia:Deep_external_pudendal_artery] synonym: "arteriae pudendae externa profunda" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "arteriae pudendales externa profunda" EXACT OMO:0003011 [doi:10.1002/ca.23705] @@ -287385,6 +297426,8 @@ name: superficial external pudendal artery def: "An artery that arises from the medial side of the femoral artery, close to the superficial epigastric artery and superficial iliac circumflex artery." [Wikipedia:Superficial_external_pudendal_artery] comment: After piercing the femoral sheath and fascia cribrosa, it courses medialward, across the spermatic cord (or round ligament in the female), to be distributed to the integument on the lower part of the abdomen, the penis and scrotum in the male, and the labium majus in the female, anastomosing with branches of the internal pudendal artery. it crosses superficial to the inguinal ligament[WP] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria pudenda externa superficialis" RELATED OMO:0003011 [Wikipedia:Superficial_external_pudendal_artery] synonym: "arteriae pudendae externa superficialis" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "arteriae pudendales externa superficialis" EXACT OMO:0003011 [doi:10.1002/ca.23705] @@ -287407,6 +297450,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/43/Gr id: UBERON:0007318 name: saphenous vein def: "Either of two main superficial veins of the leg, one larger than the other, that begin at the foot." [BTO:0001808] +subset: human_subset +subset: mouse_subset xref: BTO:0001808 xref: CALOHA:TS-0893 xref: EMAPA:37186 {source="MA:th"} @@ -287421,6 +297466,8 @@ relationship: part_of UBERON:0003823 ! hindlimb zeugopod [Term] id: UBERON:0007319 name: medial saphenous vein +subset: human_subset +subset: mouse_subset synonym: "medial accessory saphenous vein" EXACT [FMA:44322] xref: EMAPA:37172 {source="MA:th"} xref: FMA:44322 @@ -287432,6 +297479,8 @@ property_value: editor_note "TODO - check" xsd:string [Term] id: UBERON:0007321 name: lateral saphenous vein +subset: human_subset +subset: mouse_subset synonym: "lateral accessory saphenous vein" EXACT [FMA:44321] xref: EMAPA:37162 {source="MA:th"} xref: FMA:44321 @@ -287444,6 +297493,8 @@ id: UBERON:0007324 name: pancreatic lobule def: "A dense accumulation of exocrine glands in the pancreas often surrounding islets of Langerhans." [ISBN:0123813611] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lobulus pancreaticus" EXACT [FMA:16012] synonym: "pancreas lobe" EXACT [MA:0000721] synonym: "pancreatic lobule" EXACT [FMA:16012] @@ -287464,6 +297515,8 @@ id: UBERON:0007329 name: pancreatic duct def: "A duct that collects and carries secretions of the exocrine pancreas to the intestine." [GOC:cvs, GOC:ymb, https://github.com/obophenotype/uberon/issues/1250, https://orcid.org/0000-0002-2244-7917, https://orcid.org/0000-0002-6601-2165, https://orcid.org/0000-0002-9900-7880, Wikipedia:Pancreatic_duct] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "duct of pancreas" EXACT [OBOL:accepted] @@ -287558,6 +297611,8 @@ relationship: part_of UBERON:0000203 ! pallium [Term] id: UBERON:0007349 name: mesopallium +subset: human_subset +subset: mouse_subset synonym: "middle pallium" RELATED [BTO:0003405] xref: BTO:0003405 is_a: UBERON:0002616 ! regional part of brain @@ -287592,6 +297647,8 @@ relationship: part_of UBERON:0000203 ! pallium id: UBERON:0007352 name: stria vascularis vasculature def: "Blood vessels supplying the stria vascularis in the cochlea of the inner ear." [MP:0004368] +subset: human_subset +subset: mouse_subset synonym: "stria vascularis blood vessel" RELATED [MP:0004368] synonym: "stria vascularis blood vessels" EXACT [] is_a: UBERON:0002200 ! vasculature of head @@ -287604,6 +297661,8 @@ relationship: part_of UBERON:0002282 ! stria vascularis of cochlear duct id: UBERON:0007354 name: cartilage of pharyngotympanic tube def: "A triangular plate of elastic fibrocartilage that forms the cartilage component of the pharyngotympanic tube." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Cartilage_of_pharyngotympanic_tube] +subset: human_subset +subset: mouse_subset synonym: "cartilage of auditory tube" EXACT [FMA:60096] synonym: "cartilage of eustachian tube" EXACT [FMA:60096] synonym: "cartilago tubae auditivae" EXACT OMO:0003011 [FMA:60096, FMA:TA] @@ -287623,6 +297682,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b9/Gr id: UBERON:0007355 name: bony part of pharyngotympanic tube def: "The bony part of pharyngotympanic tube is about 12 mm. in length. It begins in the carotid wall of the tympanic cavity, below the septum canalis musculotubarii, and, gradually narrowing, ends at the angle of junction of the squama and the petrous portion of the temporal bone, its extremity presenting a jagged margin which serves for the attachment of the cartilaginous portion." [Wikipedia:Bony_part_of_pharyngotympanic_tube] +subset: human_subset +subset: mouse_subset synonym: "bony part of auditory tube" EXACT [FMA:60057] synonym: "bony part of eustachian tube" EXACT [FMA:60057] synonym: "osseous portion" RELATED [Wikipedia:Bony_part_of_pharyngotympanic_tube] @@ -287788,6 +297849,8 @@ property_value: editor_note "Consider classifying each subdivision as 'stomach c id: UBERON:0007367 name: surface of tongue def: "An anatomical surface that is part of a tongue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "tongue surface" EXACT [FMA:54647] xref: FMA:54647 xref: SCTID:314870004 @@ -287801,6 +297864,8 @@ relationship: part_of UBERON:0001723 ! tongue id: UBERON:0007371 name: superior surface of tongue def: "The upper (superior) side of the tongue." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "dorsal surface of tongue" EXACT [FMA:54646] xref: FMA:54646 is_a: UBERON:0007367 ! surface of tongue @@ -287813,6 +297878,8 @@ property_value: editor_note "check superior/dorsal" xsd:string id: UBERON:0007373 name: inferior surface of tongue def: "The lower (inferior) side of the tongue." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "ventral surface of tongue" EXACT [FMA:54648] synonym: "ventrum linguae" EXACT [] xref: FMA:54648 @@ -287827,6 +297894,8 @@ property_value: editor_note "check inferior/ventral" xsd:string id: UBERON:0007374 name: incus cartilage element def: "An incus endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:18228 is_a: UBERON:0015017 ! incus endochondral element is_a: UBERON:0035131 ! auditory ossicle cartilage element @@ -287840,6 +297909,8 @@ id: UBERON:0007375 name: roof of mouth def: "A multi-tissue structure consisting of bone and soft tissue that forms a part of the roof of the oral cavity. In mammals this is the combination of the primary palate (premaxilla) and the secondary palate. In early tetrapods it consists of the vomer, pterygoid, parasphenoid, palatine and ectopterygoid bones." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "palate" RELATED [] synonym: "palatum" RELATED INCONSISTENT [] synonym: "primary or secondary palate" RELATED [] @@ -287857,6 +297928,8 @@ id: UBERON:0007376 name: outer epithelium def: "The epidermis is the entire outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species[GO]." [GO:0008544] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "epidermis" EXACT [GO:0008544] synonym: "epidermis (sensu Metazoa)" EXACT [] synonym: "hypoderm" RELATED INCONSISTENT [BTO:0000313] @@ -287884,6 +297957,8 @@ property_value: editor_note "this grouping class exists primarily to align with id: UBERON:0007377 name: stratum compactum of dermis def: "Portion of the dermis characterized by a well-arranged, plywood-like, collagenous network." [ISBN:0073040584, ZFIN:ZDB-PUB-040726-12] +subset: human_subset +subset: mouse_subset synonym: "dermal deep region" EXACT [ZFA:0001182] synonym: "stratum compactum" EXACT [AAO:0010600] xref: AAO:0010600 @@ -287957,6 +298032,8 @@ id: UBERON:0007383 name: enveloping layer of ectoderm def: "Outermost layer of cells surrounding the embryo." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "enveloping layer" EXACT [ZFIN:ZDB-PUB-961014-576] synonym: "EVL" EXACT [ZFA:0000086] xref: EFO:0003425 @@ -287975,6 +298052,8 @@ property_value: taxon_notes "Originally this tissue is one cell layer thick but id: UBERON:0007384 name: appendage lymph vessel def: "A lymphatic vessel that is part of a limb/fin." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: TAO:0005300 xref: ZFA:0005300 is_a: UBERON:0001473 ! lymphatic vessel @@ -287987,6 +298066,8 @@ relationship: part_of UBERON:0007304 ! appendage vasculature id: UBERON:0007385 name: pectoral appendage lymph vessel def: "A lymphatic vessel that is part of a pectoral appendage." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: TAO:0005302 xref: ZFA:0005302 is_a: UBERON:0007384 ! appendage lymph vessel @@ -287999,6 +298080,8 @@ relationship: part_of UBERON:0007302 ! pectoral appendage vasculature id: UBERON:0007386 name: pelvic appendage lymph vessel def: "A lymphatic vessel that is part of a pelvic appendage." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0007384 ! appendage lymph vessel intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: part_of UBERON:0004709 ! pelvic appendage @@ -288009,6 +298092,8 @@ id: UBERON:0007389 name: paired limb/fin cartilage def: "A cartilage tissue that is part of a paired limb or fin." [http://orcid.org/0000-0002-6601-2165] subset: homology_grouping +subset: human_subset +subset: mouse_subset xref: TAO:0001543 xref: ZFA:0001543 is_a: UBERON:0002418 ! cartilage tissue @@ -288022,6 +298107,8 @@ property_value: external_definition "Cartilage which is part of one of the paire id: UBERON:0007390 name: pectoral appendage cartilage tissue def: "A cartilage tissue that is part of a pectoral appendage." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pectoral fin cartilage" RELATED [TAO:0000257] xref: TAO:0000257 xref: ZFA:0000257 @@ -288038,6 +298125,8 @@ property_value: external_definition "Cartilage which is part of the pectoral fin id: UBERON:0007391 name: pelvic appendage cartilage tissue def: "A cartilage tissue that is part of a pelvic appendage." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pelvic fin cartilage" RELATED [TAO:0001459] xref: TAO:0001459 xref: ZFA:0001459 @@ -288054,6 +298143,8 @@ property_value: external_definition "Cartilage which is part of the pelvic fin.[ id: UBERON:0007412 name: midbrain raphe nuclei def: "Midline nuclei found in the midbrain, includes the dorsal raphe nucleus and the rostral linear nucleus of raphe." [BIRNLEX:1676] +subset: human_subset +subset: mouse_subset synonym: "midbrain raphe" EXACT [BIRNLEX:1676] synonym: "midbrain raphe nuclei" EXACT [BIRNLEX:1676] synonym: "nuclei raphes tegmenti mesencephali" EXACT OMO:0003011 [FMA:77787, FMA:TA] @@ -288078,6 +298169,8 @@ property_value: editor_note "TODO - check. note BTO class is placed here as it i id: UBERON:0007413 name: nucleus of pontine reticular formation def: "A nucleus of brain that is part of a pontine reticular formation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pontine reticular formation nucleus" EXACT [FMA:72245] xref: EMAPA:36642 xref: FMA:72245 @@ -288093,6 +298186,8 @@ id: UBERON:0007414 name: nucleus of midbrain tegmentum alt_id: UBERON:0012277 def: "A nucleus of brain that spans a midbrain tegmentum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "tegmental nuclei" EXACT OMO:0003004 [] synonym: "tegmental nucleus" EXACT [ZFA:0005577] xref: FMA:258768 @@ -288107,6 +298202,8 @@ property_value: curator_notes "this class groups together any nuclei in the tegm id: UBERON:0007415 name: nucleus of midbrain reticular formation def: "A nucleus of midbrain tegmentum that is part of a midbrain reticular formation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesencephalic reticular nucleus" RELATED [BAMS:MRN] synonym: "midbrain reticular formation nucleus" EXACT [FMA:62443] synonym: "midbrain reticular nucleus" EXACT [ABA:MRN] @@ -288125,6 +298222,8 @@ relationship: part_of UBERON:0002639 ! midbrain reticular formation id: UBERON:0007416 name: cerebellar peduncle def: "Any of the three large paired bundles of nerve fibers that connect the cerebellum to the brain stem." [MGI:csmith, MP:0009976] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebellum peduncle" RELATED [EMAPA:35213] xref: BAMS:cbp @@ -288144,6 +298243,8 @@ relationship: part_of UBERON:0002474 ! cerebellar peduncular complex [Term] id: UBERON:0007417 name: peduncle of neuraxis +subset: human_subset +subset: mouse_subset synonym: "neuraxis peduncle" EXACT [FMA:83860] xref: FMA:83860 is_a: UBERON:0002316 ! white matter @@ -288153,6 +298254,8 @@ id: UBERON:0007418 name: neural decussation def: "Nerve fibers crossing the midline of the neuraxis relative to their point of origin, on a course to from one level of the nervous system to another. (CUMBO, Heimer, L. The Human Brain, 2nd ed., 1995, pg 6)." [NLX:144064] subset: cumbo +subset: human_subset +subset: mouse_subset synonym: "chiasm" BROAD [] synonym: "chiasma" BROAD [] synonym: "decussation" BROAD [] @@ -288171,6 +298274,8 @@ relationship: part_of UBERON:0002316 ! white matter id: UBERON:0007425 name: decussation of diencephalon def: "A neural decussation that is part of a diencephalon." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "diencephalon decussation" EXACT [FMA:62446] xref: FMA:62446 is_a: UBERON:0007418 {source="FMA"} ! neural decussation @@ -288182,6 +298287,8 @@ relationship: part_of UBERON:0001894 {source="Obol"} ! diencephalon id: UBERON:0007440 name: stratum intermedium of tooth def: "The stratum intermedium in a developing tooth is a layer of two or three cells between the inner enamel epithelium and the newly forming cells of the stellate reticulum. It first appears during the early bell stage of tooth development, at around the 14th week of intrauterine life (in humans). The stratum intermedium has a notably high alkaline phosphatase activity. This layer, along with the inner enamel epithelium, is responsible for the tooth enamel formation. It is a part of the dental (enamel) organ." [Wikipedia:Stratum_intermedium] +subset: human_subset +subset: mouse_subset synonym: "stratum intermedium" BROAD [BTO:0005009] xref: BTO:0005009 xref: NCIT:C33628 @@ -288195,6 +298302,8 @@ relationship: part_of UBERON:0005176 {source="BTO"} ! tooth enamel organ id: UBERON:0007473 name: lumen of epithelial sac def: "The space within an epithelial sphere." [AEO:JB] +subset: human_subset +subset: mouse_subset synonym: "cavity of vesicle" EXACT [AEO:0000079] xref: AEO:0000079 is_a: UBERON:0012467 ! enclosed anatomical space @@ -288208,6 +298317,8 @@ relationship: part_of UBERON:0007499 ! epithelial sac id: UBERON:0007475 name: matrix-based tissue def: "A tissue whose predominant feature is extracellular matrix which may or may not be highly hydrated or calcified." [AEO:JB] +subset: human_subset +subset: mouse_subset xref: AEO:0000081 xref: EHDAA2:0003081 is_a: UBERON:0000479 ! tissue @@ -288219,6 +298330,8 @@ relationship: composed_primarily_of GO:0031012 ! extracellular matrix id: UBERON:0007486 name: fluid-based anatomical entity def: "Fluid anatomical entity containing cells." [AEO:JB] +subset: human_subset +subset: mouse_subset xref: AEO:0000095 xref: EHDAA2:0003095 is_a: UBERON:0000481 {source="AEO"} ! multi-tissue structure @@ -288227,6 +298340,8 @@ is_a: UBERON:0000481 {source="AEO"} ! multi-tissue structure id: UBERON:0007490 name: keratin-based acellular structure def: "Acellular anatomical structure whose predominant constituent is keratin." [AEO:JB] +subset: human_subset +subset: mouse_subset synonym: "keratin-based structure" RELATED [EHDAA2:0003099] xref: AEO:0000099 xref: EHDAA2:0003099 @@ -288241,6 +298356,8 @@ property_value: editor_note "should all structures composed primarily of keratin id: UBERON:0007491 name: chitin-based acellular structure def: "Acellular anatomical structure whose predominant constituent is chitin." [AEO:JB] +subset: human_subset +subset: mouse_subset xref: AEO:0000100 xref: EHDAA2:0003100 is_a: UBERON:0000476 ! acellular anatomical structure @@ -288262,6 +298379,8 @@ replaced_by: UBERON:0005085 id: UBERON:0007499 name: epithelial sac def: "An epithelial tube that is open at one end only." [AEO:JB, UBERONREF:0000001] +subset: human_subset +subset: mouse_subset xref: AEO:0000115 xref: EHDAA2:0003115 is_a: UBERON:0003914 {source="AEO"} ! epithelial tube @@ -288274,6 +298393,8 @@ relationship: has_quality PATO:0001987 ! saccular id: UBERON:0007500 name: epithelial tube open at both ends def: "An epithelial tube open at both ends that allows fluid flow." [AEO:JB, UBERONREF:0000001] +subset: human_subset +subset: mouse_subset xref: AEO_RETIRED:0000116 xref: RETIRED_EHDAA2:0003116 is_a: UBERON:0003914 {source="AEO"} ! epithelial tube @@ -288282,6 +298403,8 @@ is_a: UBERON:0003914 {source="AEO"} ! epithelial tube id: UBERON:0007501 name: arborizing epithelial duct system def: "A collection of connected epithelial tubes with a single portal." [AEO:JB, UBERONREF:0000001] +subset: human_subset +subset: mouse_subset synonym: "arborising epithelial duct system" EXACT [AEO:0000117] xref: AEO:0000117 xref: EHDAA2:0003117 @@ -288292,6 +298415,8 @@ relationship: has_part UBERON:0003914 {source="AEO"} ! epithelial tube id: UBERON:0007502 name: epithelial plexus def: "A complex of interlinking epithelial tubules." [AEO:JB] +subset: human_subset +subset: mouse_subset xref: AEO:0000118 xref: EHDAA2:0003118 is_a: UBERON:0003914 {source="AEO"} ! epithelial tube @@ -288301,6 +298426,8 @@ relationship: has_part UBERON:0003914 {source="AEO"} ! epithelial tube id: UBERON:0007503 name: epithelial vesicle def: "A closed epithelium with a lumen." [AEO:JB] +subset: human_subset +subset: mouse_subset xref: AEO:0000119 xref: EHDAA2:0003119 is_a: UBERON:0000483 {source="AEO"} ! epithelium @@ -288309,6 +298436,8 @@ is_a: UBERON:0000483 {source="AEO"} ! epithelium id: UBERON:0007521 name: smooth muscle sphincter def: "A ring of smooth muscle cells whose contraction closes the opening of the ring." [AEO:JB] +subset: human_subset +subset: mouse_subset xref: AEO:0000143 xref: EHDAA2:0003143 xref: SCTID:362915001 @@ -288322,6 +298451,8 @@ relationship: has_part CL:0000192 ! smooth muscle cell id: UBERON:0007522 name: striated muscle sphincter def: "A ring of striated muscle cells whose contraction closes the opening of the ring." [AEO:JB] +subset: human_subset +subset: mouse_subset xref: AEO:0000144 xref: EHDAA2:0003144 is_a: UBERON:0004590 ! sphincter muscle @@ -288334,6 +298465,8 @@ relationship: has_part CL:0000737 ! striated muscle cell id: UBERON:0007524 name: dense mesenchyme tissue def: "Mesenchyme with little extracellular matrix." [AEO:JB] +subset: human_subset +subset: mouse_subset xref: AEO:0000146 xref: EHDAA2:0003146 is_a: UBERON:0003104 {source="AEO"} ! mesenchyme @@ -288343,6 +298476,8 @@ relationship: has_part CL:0000057 {source="AEO"} ! fibroblast id: UBERON:0007529 name: loose mesenchyme tissue def: "Mesenchyme whose cells are embedded in obvious amounts of extracellular matrix." [AEO:JB] +subset: human_subset +subset: mouse_subset xref: AEO:0000151 xref: EHDAA2:0003151 is_a: UBERON:0003104 {source="AEO"} ! mesenchyme @@ -288353,6 +298488,8 @@ relationship: has_part CL:0000327 {source="AEO"} ! extracellular matrix secretin id: UBERON:0007530 name: migrating mesenchyme population def: "Mesenchymal cells that are migrating." [AEO:JB] +subset: human_subset +subset: mouse_subset xref: AEO:0000152 xref: EHDAA2:0003152 is_a: UBERON:0003104 ! mesenchyme @@ -288373,6 +298510,8 @@ consider: EHDAA2:0003173 id: UBERON:0007567 name: regenerating anatomical structure def: "An anatomical structure that is undergoing regeneration." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "regenerating tissue" RELATED [ZFA:0005147] synonym: "regenerating tissues" RELATED OMO:0003004 [ZFA:0005147] synonym: "regenerative tissue" RELATED [] @@ -288393,6 +298532,8 @@ property_value: external_definition "A portion of tissue that is regrowing after id: UBERON:0007573 name: migrating epithelium def: "An epithelium that extends its surface area by peripheral movement." [AEO:JB] +subset: human_subset +subset: mouse_subset xref: AEO:0000206 xref: EHDAA2:0003251 is_a: UBERON:0000483 {source="AEO"} ! epithelium @@ -288400,6 +298541,8 @@ is_a: UBERON:0000483 {source="AEO"} ! epithelium [Term] id: UBERON:0007574 name: apical epidermal cap +subset: human_subset +subset: mouse_subset synonym: "apical epidermal caps" EXACT OMO:0003004 [ZFA:0005148] synonym: "apical epithelial cap" EXACT [Wikipedia:Blastema] xref: TAO:0005148 @@ -288414,6 +298557,8 @@ id: UBERON:0007589 name: ciliated columnar oviduct epithelium def: "A ciliated columnar epithelium that is part of a oviduct." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "epithelium of uterine tube" RELATED [FMA:62016] synonym: "uterine tube epithelium" RELATED [FMA:62016] xref: FMA:62016 @@ -288431,6 +298576,8 @@ id: UBERON:0007590 name: cuboidal oviduct epithelium def: "A cuboidal epithelium that is part of a oviduct." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: MA:0001720 is_a: UBERON:0004804 {source="MA"} ! oviduct epithelium is_a: UBERON:0010077 ! cuboidal epithelium @@ -288443,6 +298590,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0007592 name: ciliated columnar epithelium def: "Simple columnar epithelium in which the luminal side of the cells bears cilia. Examples: epithelium of trachea, epithelium of uterine tube.[FMA]." [FMA:64798] +subset: human_subset +subset: mouse_subset xref: FMA:64798 is_a: UBERON:0000485 {source="FMA"} ! simple columnar epithelium is_a: UBERON:0007601 ! ciliated epithelium @@ -288456,6 +298605,8 @@ property_value: taxon_notes "In humans, Ciliated columnar epithelial cells are f id: UBERON:0007601 name: ciliated epithelium def: "Epithelium bearing vibratile cilia on the free surface." [http://medical-dictionary.thefreedictionary.com/ciliated+epithelium] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: has_part CL:0000067 ! ciliated epithelial cell @@ -288465,6 +298616,8 @@ relationship: has_part CL:0000067 ! ciliated epithelial cell id: UBERON:0007602 name: stratified columnar epithelium def: "Stratified columnar epithelia is a rare type of epithelial tissue composed of column shaped cells arranged in multiple layers. Stratified columnar epithelia are found in the ocular conjunctiva of the eye, in parts of the pharynx and anus, the female's uterus, the male urethra and vas deferens. Also found in intralobular ducts in salivary glands.[WP]." [Wikipedia:Stratified_columnar_epithelia] +subset: human_subset +subset: mouse_subset synonym: "epithelium stratificatum columnare" EXACT [FMA:45564] xref: FMA:45564 xref: NCIT:C33620 @@ -288477,6 +298630,8 @@ is_a: UBERON:0012274 ! columnar epithelium id: UBERON:0007603 name: stratified cuboidal epithelium def: "Stratified cuboidal epithelia is a rare type of epithelial tissue composed of cuboidally shaped cells arranged in multiple layers. They protect areas such as ducts of sweat glands, mammary glands, and salivary glands." [Wikipedia:Stratified_cuboidal_epithelium] +subset: human_subset +subset: mouse_subset synonym: "epithelium stratificatum cuboideum" EXACT [FMA:63912] xref: FMA:63912 xref: NCIT:C33621 @@ -288489,6 +298644,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/18/Gr [Term] id: UBERON:0007606 name: ciliated stratified columnar epithelium +subset: human_subset +subset: mouse_subset xref: FMA:67521 is_a: UBERON:0007601 ! ciliated epithelium is_a: UBERON:0007602 {source="FMA"} ! stratified columnar epithelium @@ -288500,6 +298657,8 @@ relationship: has_part CL:0000067 ! ciliated epithelial cell id: UBERON:0007610 name: tibial artery def: "The anterior and posterior arteries created at the bifurcation of the popliteal artery. The anterior tibial artery begins at the lower border of the popliteus muscle and lies along the tibia at the distal part of the leg to surface superficially anterior to the ankle joint. Its branches are distributed throughout the leg, ankle, and pes. The posterior tibial artery begins at the lower border of the popliteus muscle, lies behind the tibia in the lower part of its course, and is found situated between the medial malleolus and the medial process of the calcaneal tuberosity. Its branches are distributed throughout the leg and foot." [MESH:A07.231.114.895] +subset: human_subset +subset: mouse_subset xref: EMAPA:36530 xref: GAID:514 xref: MA:0002067 @@ -288516,6 +298675,8 @@ relationship: part_of UBERON:0002103 ! hindlimb id: UBERON:0007612 name: extensor digitorum communis def: "A muscle on the back of the forearm that extends the fingers and wrist." [BTO:0001343, Wikipedia:Extensor_digitorum_muscle] +subset: human_subset +subset: mouse_subset synonym: "extensor communis" RELATED [] synonym: "extensor digitorum" EXACT [FMA:38500] synonym: "extensor digitorum communis muscle" EXACT [] @@ -288537,6 +298698,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e9/Ex id: UBERON:0007613 name: extensor digitorum lateralis muscle comment: Origin distal to extensor digitorum communis. The part of this muscle that gives a tendon to the 5th digit is comparable to the extensor digiti quinti proprius of the human [ISBN:9780716717553] +subset: mouse_subset synonym: "extensor digitorum lateralis" EXACT [MA:0002294] xref: EMAPA:36192 xref: MA:0002294 @@ -288552,6 +298714,8 @@ name: extensor digiti minimi muscle def: "The extensor minimi digiti (extensor digiti quinti proprius) is a slender muscle of the forearm, placed on the ulnar side of the Extensor digitorum communis, with which it is generally connected. It arises from the common Extensor tendon by a thin tendinous slip, from the intermuscular septa between it and the adjacent muscles. Its tendon runs through a compartment of the dorsal carpal ligament behind the distal radio-ulnar joint, then divides into two as it crosses the manus, and finally joins the expansion of the Extensor digitorum communis tendon on the dorsum of the first phalanx of the little finger[WP]." [http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Text/E/14Extensor.shtml, Wikipedia:Extensor_digiti_minimi_muscle] comment: The tendon of insertion is sometimes divided and gives a slip to the fourth digit. An ulnar slip has been observed to end on the base of the fifth metacarpal, thus exactly reproducing the arrangement of the serially homologous slip known as peroneus tertius in the leg. The muscle may be absent in rare cases, but fusion with extensor digitorum is frequent, in which case the tendon comes from the common extensor. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "extensor digiti minimi" RELATED [Wikipedia:Extensor_digiti_minimi_muscle] synonym: "extensor digiti minimi (hand)" RELATED [Wikipedia:Extensor_digiti_minimi_muscle] synonym: "extensor digiti quinti proprius" RELATED [http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Text/E/14Extensor.shtml, Wikipedia:Extensor_digiti_minimi_muscle] @@ -288569,6 +298733,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/15/Gr id: UBERON:0007615 name: prostate gland ventral lobe def: "Prostate gland lobe that in the mouse has the following characteristics: grossly, clear, gelatinous, and leaf-like; originates ventrally and wraps incompletely around the urethra dorsally, bilaterally. Simple columnar epithelium with the least amount of infolding. Secretory cells are oval and have slightly foamy cytoplasm; nuclei and basal nucleoli are inconspicuous. The secretion is pale and homogeneous. The stroma is thin." [PMID:15163300] +subset: mouse_subset subset: pheno_slim synonym: "ventral prostate" RELATED [] xref: BTO:0000490 @@ -288582,6 +298747,8 @@ relationship: never_in_taxon NCBITaxon:9606 {source="PMID:15163300"} ! Homo sapi id: UBERON:0007616 name: layer of synovial tissue def: "A thin, loose vascular connective tissue that makes up the membranes surrounding joints and the sheaths protecting tendons (particularly flexor tendons in the hands and feet) where they pass over bony prominences. Synovial tissue contains synovial cells, which secrete a viscous liquid called synovial fluid; this liquid contains protein and hyaluronic acid and serves as a lubricant and nutrient for the joint cartilage surfaces[BTO]. Synovial tissue can be found in tendons (tissues that connect muscle to bone), bursae (fluid-filled, cushioning sacs found in spaces between tendons, ligaments, and bones), and the cavity (hollow enclosed area) that separates the bones of a freely movable joint, such as the knee or elbow[BTO]." [BTO:0001338, http://www.britannica.com/EBchecked/topic/578563/synovial-tissue] +subset: human_subset +subset: mouse_subset synonym: "stratum synoviale" NARROW [FMA:TA] synonym: "synovial layer" NARROW [FMA:66762] synonym: "synovial membrane" NARROW [FMA:66762] @@ -288600,6 +298767,8 @@ relationship: produces UBERON:0001090 ! synovial fluid id: UBERON:0007617 name: synovial cavity of joint def: "An anatomical cavity that surrounded_by a synovial joint." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "articular cavity (synovial joint)" EXACT [FMA:11356] synonym: "cavitas articularis (junctura synovialis)" EXACT [FMA:11356] synonym: "cavity of synovial joint" EXACT [FMA:11356] @@ -288616,6 +298785,8 @@ relationship: part_of UBERON:0002217 ! synovial joint id: UBERON:0007618 name: synovial cavity of hip joint def: "A synovial cavity of joint that is part of a hip joint." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:19021 xref: FMA:9701 is_a: UBERON:0007617 ! synovial cavity of joint @@ -288627,6 +298798,8 @@ relationship: part_of UBERON:0001486 {source="FMA"} ! hip joint id: UBERON:0007619 name: limiting membrane of retina subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "retina lamina" EXACT [https://github.com/obophenotype/uberon/issues/52, MA:0001318] xref: MA:0001318 xref: SCTID:280667001 @@ -288665,6 +298838,8 @@ relationship: in_taxon NCBITaxon:8782 ! Aves id: UBERON:0007625 name: pigment epithelium of eye def: "Epithelial layer of the retina, ciliary body, or iris composed of cells containing pigment granules." [MP:0005200] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "eye pigment epithelium" RELATED [MESH:A09.371.670] xref: GAID:907 @@ -288677,6 +298852,8 @@ relationship: part_of UBERON:0000970 ! eye [Term] id: UBERON:0007626 name: subparaventricular zone +subset: human_subset +subset: mouse_subset xref: BAMS:SBPV xref: BAMS:SPZ xref: DHBA:266441555 @@ -288698,6 +298875,8 @@ id: UBERON:0007627 name: magnocellular nucleus of stria terminalis def: "A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of nine components of the anterior nuclei of stria terminalis in the Functional CNS Model- Rat ( Swanson-2004 )." [neuronames:3220] comment: the magnocellular nucleus projects to virtually all known major parts of the brain network that controls pelvic functions, including micturition, defecation, and penile erection, as well as to brain networks controlling nutrient and body water homeostasis. This and other evidence suggests that the magnocellular nucleus is part of a corticostriatopallidal differentiation modulating and coordinating pelvic functions with the maintenance of nutrient and body water homeostasis[PMID:16304682] +subset: human_subset +subset: mouse_subset synonym: "magnocellular nucleus" EXACT [MA:0000928] xref: BAMS:MA xref: EMAPA:37666 {source="MA:th"} @@ -288715,6 +298894,8 @@ relationship: part_of UBERON:0011173 {source="MA"} ! anterior division of bed nu id: UBERON:0007628 name: lateral septal complex def: "The lateral septal area; largest nuclear mass in this region, plays a pivotal role in various physiological processes, such as aggression, emotion, thermoregulation, water and food intake and sexual behaviour." [BTO:0003937, http://www.fact-archive.com/] +subset: human_subset +subset: mouse_subset synonym: "lateral septal area" EXACT [BTO:0003937] synonym: "lateral septum" RELATED [] synonym: "lateral septum complex" RELATED [BAMS:LSX] @@ -288732,6 +298913,8 @@ relationship: part_of UBERON:0002435 {source="ABA"} ! striatum id: UBERON:0007629 name: medial septal complex def: "A septal nuclear complex that consists of the nucleus of the diagonal bands and the septal medial nuclei." [https://github.com/obophenotype/uberon/issues/1356] +subset: human_subset +subset: mouse_subset synonym: "medial septum complex" RELATED [BAMS:MSX] xref: BAMS:MSC xref: BAMS:MSX @@ -288746,6 +298929,8 @@ relationship: mutually_spatially_disjoint_with UBERON:0002977 {source="ABA"} ! t id: UBERON:0007630 name: septohippocampal nucleus def: "Part of septal nuclear complex. In the human, it refers to the most caudal of scattered clusters of neurons in the septum pellucidum that extend, on the underside of the corpus callosum, from the level of the medial septal nucleus to the CA fields ( Crosby-1962 ). In the rat it is associated with the lateral septal nucleus throughout its rostro-caudal course toward the CA fields ( Swanson-1998. Adapted from Brain Info." [NLX:60880] +subset: human_subset +subset: mouse_subset xref: BAMS:SH xref: BAMS:SHi xref: DMBA:16204 @@ -288762,6 +298947,8 @@ relationship: part_of UBERON:0002663 {source="MA-modified"} ! septal nuclear com [Term] id: UBERON:0007631 name: accessory olfactory bulb glomerular layer +subset: human_subset +subset: mouse_subset synonym: "accessory olfactory bulb, glomerular layer" EXACT [ABA:AOBgl] synonym: "AOB, glomerular layer" EXACT [DMBA:AGlom] synonym: "glomerular layer of the accessory olfactory bulb" RELATED [BAMS:GlA] @@ -288779,6 +298966,8 @@ relationship: part_of UBERON:0004069 {source="ABA"} ! accessory olfactory bulb [Term] id: UBERON:0007632 name: Barrington's nucleus +subset: human_subset +subset: mouse_subset synonym: "Barrington nucleus" RELATED [BAMS:B] synonym: "nucleus of Barrington" EXACT [DMBA:Bar] xref: BAMS:B @@ -288806,6 +298995,8 @@ relationship: part_of UBERON:0000988 {source="MA"} ! pons id: UBERON:0007633 name: nucleus of trapezoid body def: "A nucleus embedded within the fibers of the trapezoid body." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Trapezoid_body] +subset: human_subset +subset: mouse_subset synonym: "nuclei of trapezoid body" RELATED [FMA:84023] synonym: "nucleus corporis trapezoidei" RELATED OMO:0003011 [NeuroNames:576] synonym: "nucleus of the trapezoid body" RELATED [BAMS:NTB, BAMS:Tz] @@ -288847,6 +299038,8 @@ id: UBERON:0007634 name: parabrachial nucleus def: "A nucleus of the parabrachial area, which in the human brain is a horseshoe-shaped strip of gray matter comprising the Kölliker-Fuse nucleus, the lateral parabrachial nucleus and the medial parabrachial nucleus." [Wikipedia:Parabrachial_area] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "parabrachial area" RELATED [] synonym: "parabrachial complex" RELATED [] synonym: "parabrachial nuclei" RELATED [] @@ -288874,6 +299067,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0007635 name: nucleus of medulla oblongata def: "A neural nucleus that is part of a medulla oblongata." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:258772 xref: SCTID:304943004 is_a: UBERON:0006331 ! brainstem nucleus @@ -288886,6 +299081,8 @@ relationship: part_of UBERON:0001896 ! medulla oblongata id: UBERON:0007637 name: hippocampus stratum lucidum def: "Layer of hippocampus area CA3 lying superficial to the pyramidal cell layer that contains mossy fiber axons projecting from the dentate gyrus. A slight thickening in this layer marks the border in some species between areas CA2 and CA3. dapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 460)." [BIRNLEX:4108] +subset: human_subset +subset: mouse_subset synonym: "stratum lucidum" BROAD [BIRNLEX:4108] synonym: "stratum lucidum hippocampi" RELATED OMO:0003011 [Wikipedia:Stratum_lucidum_of_hippocampus] synonym: "stratum lucidum hippocampus" RELATED [BAMS:SLu] @@ -288908,6 +299105,8 @@ relationship: immediately_superficial_to UBERON:0002313 ! hippocampus pyramidal id: UBERON:0007639 name: hippocampus alveus def: "Regional part of fornix consisting of a thin layer of white matter on the surface of the hippocampal formation, bordering the wall of the lateral ventricle and composed of white, myelinated fibers. The alveus arises from cell bodies in the subiculum and hippocampus, and eventually merges with the fimbria of the hippocampus. The fimbria goes on to become the fornix (MM: 2006-10-26)." [BIRNLEX:1510] +subset: human_subset +subset: mouse_subset synonym: "alveus" EXACT [BIRNLEX:1510] synonym: "alveus hippocampi" RELATED OMO:0003011 [NeuroNames:186] synonym: "alveus of fornix" RELATED [BAMS:alv] @@ -288936,6 +299135,8 @@ property_value: editor_note "TODO - check xref: NCIT:C32058 ! Alveus" xsd:string id: UBERON:0007640 name: hippocampus stratum lacunosum moleculare def: "Layer of the hippocampus lying just superficial to the stratum radiatum and bounded by the pial surface of the hippocampus. The fibers of the perforant pathway fibers from entorhinal cortex and several other brain areas terminate in this layer. Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 460)." [BIRNLEX:1359] +subset: human_subset +subset: mouse_subset synonym: "lacunar-molecular layer of hippocampus" EXACT [FMA:83149] synonym: "stratum hippocampi moleculare et substratum lacunosum" EXACT OMO:0003011 [FMA:83149, FMA:TA] synonym: "stratum lacunosum moleculare" EXACT [BIRNLEX:1359, neuronames:2456] @@ -288959,6 +299160,8 @@ property_value: structure_notes "Here the perforant path fibers form synapses on id: UBERON:0007641 name: trigeminal nuclear complex def: "The sensory trigeminal nerve nuclei are the largest of the cranial nerve nuclei, and extend through the whole of the midbrain, pons and medulla. There is also a distinct trigeminal motor nucleus that is medial to the chief sensory nucleus[WP]." [Wikipedia:Trigeminal_nerve_nuclei] +subset: human_subset +subset: mouse_subset synonym: "nuclei trigemini" RELATED OMO:0003011 [Wikipedia:Trigeminal_nerve_nuclei] synonym: "trigeminal nuclei" EXACT [FMA:71248] xref: BIRNLEX:4096 @@ -288982,6 +299185,8 @@ property_value: external_ontology_notes "in MA and FMA this is part of the pons id: UBERON:0007642 name: ligamentum arteriosum def: "A small ligament attached to the superior surface of the pulmonary trunk and the inferior surface of the aortic arch. It is a nonfunctional vestige of the ductus arteriosus, and is formed within three weeks of birth. The ligamentum arteriosum is closely related to the left recurrent laryngeal nerve, a branch of the left vagus nerve. After splitting from the left vagus nerve, the left recurrent laryngeal loops around the aortic arch posterior to the ligamentum arteriosum, after which it ascends to the larynx[WP]." [Wikipedia:Ligamentum_arteriosum] +subset: human_subset +subset: mouse_subset synonym: "arterial ligament" RELATED [Wikipedia:Ligamentum_arteriosum] synonym: "Botallo's duct" EXACT [FMA:13421] synonym: "Botallo's ligament" EXACT [FMA:13421] @@ -289000,6 +299205,8 @@ relationship: seeAlso UBERON:0003716 ! recurrent laryngeal nerve id: UBERON:0007643 name: node of ligamentum arteriosum def: "An inconstant lymph node of the anterior mediastinal group located adjacent to the ligamentum arteriosum." [http://www.mondofacto.com/facts/dictionary?node+of+ligamentum+arteriosum] +subset: human_subset +subset: mouse_subset synonym: "Botallo's node" EXACT [FMA:74033] synonym: "ligamentum arteriosum node" EXACT [FMA:74033] synonym: "lymph node of ligamentum arteriosum" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -289012,6 +299219,8 @@ relationship: adjacent_to UBERON:0007642 ! ligamentum arteriosum id: UBERON:0007644 name: thoracic lymph node def: "A lymph node that is part of a thorax. Includes lymph nodes of the lungs and mediastinal lymph nodes." [OBOL:automatic, Wikipedia:Lymph_node#Lymph_nodes_of_the_thorax] +subset: human_subset +subset: mouse_subset synonym: "deep thoracic lymph node" RELATED [FMA:12772] synonym: "lymph node of thorax" EXACT [FMA:12772] xref: FMA:12772 @@ -289030,6 +299239,8 @@ id: UBERON:0007645 name: future meninx alt_id: UBERON:0004065 def: "A developing mesenchymal capsule that covers the developing brain and spinal cord and is the precursor of the meningeal cluster. In mammals this gives rise to the arachnoid mater, pia mater and dura mater. In cyclostomes and fishes, the future meninx gives rise to a single meningeal layer, the primitive meninx." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "meninx primitiva" RELATED [MP:0009726] synonym: "primary meninx" EXACT [EHDAA2:0004453] @@ -289050,6 +299261,8 @@ property_value: external_definition "the outermost mesenchymal covering of the d id: UBERON:0007646 name: endomeninx def: "The innermost layer of the mesenchymal capsule that surrounds the developing brain, primarily of neural crest origin. The endomeninx forms the leptomeninx." [ISBN:9781607950325] +subset: human_subset +subset: mouse_subset synonym: "future leptomeninges" EXACT [] synonym: "future leptomeninx" EXACT [] is_a: UBERON:0007645 ! future meninx @@ -289063,6 +299276,8 @@ id: UBERON:0007647 name: ectomeninx alt_id: UBERON:0010115 def: "The outermost layer of the mesenchymal capsule that surrounds the developing brain, of mixed paraxial mesoderm and neural crest origin. The ectomeninx forms the dura mater (both inner layer and outer chondrogenic layer)." [ISBN:9781607950325] +subset: human_subset +subset: mouse_subset synonym: "future dura mater" EXACT [EHDAA2:0004317] xref: EHDAA2:0004317 is_a: UBERON:0007645 ! future meninx @@ -289076,6 +299291,8 @@ relationship: has_potential_to_develop_into UBERON:0002363 ! dura mater id: UBERON:0007650 name: esophagogastric junction def: "The junction between the esophagus and the stomach epithelium." [http://www.thefreedictionary.com/esophagogastric+junction] +subset: human_subset +subset: mouse_subset synonym: "cardioesophageal junction" EXACT [FMA:9434] synonym: "esophageal sphincter" RELATED [MESH:A03.365.414] synonym: "esophagogastric junction" RELATED [MESH:A03.365.414] @@ -289099,6 +299316,8 @@ id: UBERON:0007651 name: anatomical junction def: "An anatomical structure that connects two structures." [http://code.google.com/p/caro2/issues/detail?id=15] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "anatomical junction" EXACT [] synonym: "junction" BROAD [] @@ -289114,6 +299333,8 @@ relationship: present_in_taxon NCBITaxon:4751 ! Fungi id: UBERON:0007652 name: esophageal sphincter def: "A sphincter that is part of an esophagus." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: SCTID:277765007 is_a: UBERON:0003832 ! esophagus muscle is_a: UBERON:0004590 ! sphincter muscle @@ -289126,6 +299347,8 @@ property_value: editor_note "check for specific subtypes across species. Note ma id: UBERON:0007653 name: capillary loop nephron def: "Developing nephron where the developing glomerular capsule has been invaded by a glomerular capillary loop called the glomerular tuft." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "developing capillary loop stage nephron" EXACT [EMAPA:28506] synonym: "stage III nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Capillary_loop.html] xref: EMAPA:28506 @@ -289137,6 +299360,8 @@ property_value: editor_note "TODO" xsd:string [Term] id: UBERON:0007654 name: maturing nephron +subset: human_subset +subset: mouse_subset synonym: "stage IV nephron" RELATED [EMAPA:28485] xref: EMAPA:28485 is_a: UBERON:0010532 {source="cjm"} ! primitive nephron @@ -289148,6 +299373,8 @@ property_value: editor_note "TODO" xsd:string id: UBERON:0007656 name: lateral recess of fourth ventricle def: "The lateral recess is a projection of the fourth ventricle which extends into the inferior cerebellar peduncle of the brainstem. The lateral aperture, an opening in each extremity of the lateral recess, provides a conduit for cerebrospinal fluid to flow from the brain's ventricular system into the subarachnoid space." [Wikipedia:Lateral_recess] +subset: human_subset +subset: mouse_subset synonym: "fourth ventricle lateral recess" RELATED [BAMS:V4r] synonym: "lateral recess" BROAD [EMAPA:17257, MBA:153] synonym: "lateral recess of the 4th ventricle" RELATED [BAMS:LR4V] @@ -289171,6 +299398,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/36/Gr id: UBERON:0007657 name: anular ligament of radius def: "The anular ligament (orbicular ligament) is a strong band of fibers, which encircles the head of the radius (bone), and retains it in contact with the radial notch of the ulna." [Wikipedia:Anular_ligament_of_radius] +subset: human_subset +subset: mouse_subset synonym: "annular ligament of radius" EXACT [FMA:38872] synonym: "anular ligament" BROAD [EMAPA:19322] synonym: "ligamentum anulare radii" EXACT OMO:0003011 [FMA:38872, FMA:TA] @@ -289187,6 +299416,8 @@ relationship: part_of UBERON:0007165 {source="FMA"} ! proximal radio-ulnar joint id: UBERON:0007679 name: intersomitic vein def: "The vein that sprouts from the posterior cardinal vein, growing dorsally between the somites, and then joining, and draining the dorsal longitudinal anastomosing vessel." [MGI:anna] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "intersegmental vein" EXACT [ZFA:0001057] synonym: "ISV" BROAD [ZFA:0001057] @@ -289203,6 +299434,8 @@ property_value: external_definition "Primary intersegmental vessels that are con id: UBERON:0007681 name: facial neural crest def: "Cranial neural crest that is part of the facial region." [ZFA:0000875] +subset: human_subset +subset: mouse_subset xref: EMAPA:16311 xref: TAO:0000875 xref: VHOG:0001209 @@ -289216,6 +299449,8 @@ property_value: homology_notes "We conclude this section by listing some of the id: UBERON:0007683 name: lateral mesenchyme derived from mesoderm subset: efo_slim +subset: human_subset +subset: mouse_subset xref: EFO:0003590 xref: EMAPA:16409 xref: TAO:0000905 @@ -289226,6 +299461,8 @@ is_a: UBERON:0005256 {source="ZFA"} ! trunk mesenchyme id: UBERON:0007684 name: uriniferous tubule def: "Functional unit of the kidney that forms urine, consisting of two parts, the nephron and the collecting tubule." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset xref: FMA:17691 is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0004819 ! kidney epithelium @@ -289237,6 +299474,8 @@ relationship: part_of UBERON:0002113 {source="FMA"} ! kidney [Term] id: UBERON:0007685 name: region of nephron tubule +subset: human_subset +subset: mouse_subset synonym: "region of renal tubule" RELATED [FMA:17692] synonym: "renal tubule region" EXACT [FMA:17692] xref: FMA:17692 @@ -289253,6 +299492,8 @@ is_obsolete: true id: UBERON:0007687 name: kidney field def: "Region of the embryo into the area in which the kidney rudiment will develop." [DOI:10.1371/journal.pone.0099864, GO:0072004, GOC:mtg_kidney_jan10] +subset: human_subset +subset: mouse_subset synonym: "kidney anlage" RELATED [GOC:mtg_kidney_jan10] is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006598 ! presumptive structure @@ -289267,6 +299508,8 @@ id: UBERON:0007688 name: anlage def: "Anlagen are populations of contiguous cells, typically arranged in one plane, that are morphologically indistinct, but that already correspond in extent to a later organ/tissue." [FBbt:00005426, http://flybase.org/reports/FBrf0178740.html] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "developmental field" EXACT [] synonym: "field" BROAD [] synonym: "future organ" RELATED [] @@ -289284,6 +299527,8 @@ relationship: part_of UBERON:0000468 ! multicellular organism id: UBERON:0007689 name: thyroid diverticulum def: "Endodermal bud derived from the endodermal epithelium of the embryonic pharyngeal floor[MP]. The thyroid diverticulum is the embryological structure from which thyroid follicular cells derive. It grows from the floor of the pharnyx[WP]." [MP:0004662, Wikipedia:Thyroid_diverticulum] +subset: human_subset +subset: mouse_subset synonym: "diverticulum thyroideum" RELATED OMO:0003011 [Wikipedia:Thyroid_diverticulum] synonym: "saccus thyroideus" RELATED OMO:0003011 [Wikipedia:Thyroid_diverticulum] xref: Wikipedia:Thyroid_diverticulum @@ -289297,6 +299542,8 @@ id: UBERON:0007690 name: early pharyngeal endoderm comment: relation conflict: ZFA vs EHDAA2. Note EHDAA2 term renamed to 'early PA endoderm' subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "early pharyngeal arch endoderm" EXACT [EHDAA2:0001457] synonym: "pharyngeal arch endoderm" RELATED [] synonym: "pharyngeal endoderm" RELATED [ZFA:0001104] @@ -289318,6 +299565,8 @@ property_value: seeAlso "http://dev.biologists.org/content/128/22/4573.full" xsd id: UBERON:0007691 name: gustatory pore def: "The minute opening of a taste bud on the surface of the oral mucosa through which the gustatory hairs of the specialised neuroepithelial gustatory cells project." [http://www.mondofacto.com/facts/dictionary?gustatory+pore] +subset: human_subset +subset: mouse_subset synonym: "porus gustatorius" EXACT [http://www.mondofacto.com/facts/dictionary?gustatory+pore] synonym: "taste pore" EXACT [FMA:63589] xref: FMA:63589 @@ -289336,6 +299585,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/0/0e/T id: UBERON:0007692 name: nucleus of thalamus def: "A nucleus of brain that is part of a thalamus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "nuclear complex of thalamus" RELATED [FMA:256693] synonym: "thalamic nucleus" EXACT [MA:0002992] xref: BTO:0002452 @@ -289355,6 +299606,8 @@ id: UBERON:0007693 name: caroticotympanic artery def: "The caroticotympanic branch (tympanic branch) is small; it enters the tympanic cavity through a minute foramen in the carotid canal, and anastomoses with the anterior tympanic branch of the internal maxillary, and with the stylomastoid artery." [Wikipedia:Caroticotympanic_arteries] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteriae caroticotympanicae" RELATED OMO:0003011 [Wikipedia:Caroticotympanic_arteries] synonym: "caroticotympanic branch" RELATED [Wikipedia:Caroticotympanic_arteries] synonym: "ramus caroticotympanicus" RELATED OMO:0003011 [Wikipedia:Caroticotympanic_arteries] @@ -289371,6 +299624,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0007699 name: tract of spinal cord def: "An axon tract that is part of a spinal cord." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "spinal cord tract" EXACT [FMA:75683] xref: FMA:75683 xref: NCIT:C12995 @@ -289385,6 +299640,8 @@ relationship: part_of UBERON:0002316 {source="cjm"} ! white matter id: UBERON:0007702 name: tract of brain def: "An axon tract that is part of a brain." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "brain tract" EXACT [FMA:83848] synonym: "landmark tracts" RELATED [DMBA:tracts] xref: FMA:83848 @@ -289399,6 +299656,8 @@ property_value: editor_note "the NIFSTD class 'nerve tract' is classified under id: UBERON:0007703 name: spinothalamic tract def: "A tract that originates from neurons in the spinal central gray and projects to various somatosensory nuclei of the thalamus. It is formed in the medulla by merger of the anterior spinothalamic tract and lateral spinothalamic tract (adapted from Braininfo.org)." [NLXANAT:1010017] +subset: human_subset +subset: mouse_subset xref: BAMS:spth xref: BAMS:stt xref: BTO:0006128 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} @@ -289418,6 +299677,8 @@ property_value: external_definition "a long process of a CNS neuron, that carrie id: UBERON:0007707 name: superior cerebellar peduncle of midbrain def: "Regional part of superior cerebellar peduncle, located in the midbrain, consisting of a large bundle of fibers largely projecting from the deep cerebellar nuclei to the midbrain and thalamus. It is continuous with the superior cerebellar peduncle of the pons. (MM)." [BIRNLEX:1162] +subset: human_subset +subset: mouse_subset synonym: "pedunculus cerebellaris superior (mesencephalon)" RELATED OMO:0003011 [NeuroNames:820] synonym: "SCPMB" BROAD OMO:0003000 [BIRNLEX:1162, NIFSTD:NeuroNames_abbrevSource] synonym: "SCPMB" EXACT [BIRNLEX:1162] @@ -289433,6 +299694,8 @@ relationship: part_of UBERON:0002150 ! superior cerebellar peduncle [Term] id: UBERON:0007709 name: superior cerebellar peduncle of pons +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "pedunculus cerebellaris superior (pontis)" RELATED OMO:0003011 [NeuroNames:833] synonym: "SCPP" BROAD OMO:0003000 [BIRNLEX:1726, NIFSTD:NeuroNames_abbrevSource] @@ -289452,6 +299715,8 @@ property_value: external_ontology_notes "FMA:72495 most likely denotes this clas [Term] id: UBERON:0007710 name: intermediate nucleus of lateral lemniscus +subset: human_subset +subset: mouse_subset synonym: "intermediate nucleus of the lateral lemniscus" RELATED [BAMS:ILL] synonym: "nucleus of the lateral lemniscus horizontal part" RELATED [BAMS:NLLh, BAMS:Nllh] synonym: "nucleus of the lateral lemniscus, horizontal part" EXACT [ABA:NLLh] @@ -289470,6 +299735,8 @@ property_value: editor_note "TODO - check" xsd:string id: UBERON:0007711 name: sixth cervical dorsal root ganglion subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "C6 dorsal root ganglion" EXACT [EMAPA:25159] synonym: "sixth cervical dorsal root ganglia" EXACT [FMA:6319] synonym: "sixth cervical dorsal root ganglion" EXACT [BIRNLEX:2608] @@ -289485,6 +299752,8 @@ id: UBERON:0007712 name: fourth thoracic spinal ganglion subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "fourth thoracic dorsal root ganglion" EXACT [BIRNLEX:2614, FMA:6324, https://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:2614 xref: EMAPA:25177 @@ -289497,6 +299766,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0007713 name: fourth sacral spinal ganglion subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "forth sacral dorsal root ganglion" EXACT [BIRNLEX:2631] synonym: "fourth sacral dorsal root ganglion" EXACT [FMA:6345, https://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:2631 @@ -289510,6 +299781,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0007714 name: cervical subsegment of spinal cord subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "segment part of cervical spinal cord" EXACT [BIRNLEX:1688] xref: BIRNLEX:1688 xref: FMA:256653 @@ -289522,6 +299795,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0007715 name: thoracic subsegment of spinal cord subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "segment part of thoracic spinal cord" EXACT [BIRNLEX:892] xref: BIRNLEX:892 xref: FMA:256655 @@ -289534,6 +299809,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0007716 name: lumbar subsegment of spinal cord subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "segment part of lumbar spinal cord" EXACT [BIRNLEX:1652] xref: BIRNLEX:1652 xref: FMA:256657 @@ -289549,6 +299826,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0007717 name: sacral subsegment of spinal cord subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "segment part of sacral spinal cord" EXACT [BIRNLEX:1512] xref: BIRNLEX:1512 xref: FMA:256659 @@ -289561,12 +299840,15 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0007718 name: principal artery to limb +subset: human_subset +subset: mouse_subset is_a: UBERON:0001637 {source="MA"} ! artery [Term] id: UBERON:0007719 name: bone of reproductive organ def: "A bone that is part of a reproductive organ." [https://github.com/obophenotype/uberon/issues/1158, OBOL:automatic] +subset: mouse_subset synonym: "baculum" NARROW [] synonym: "os penis/os clitoris" RELATED [] is_a: UBERON:0001474 ! bone element @@ -289580,6 +299862,8 @@ relationship: part_of UBERON:0003133 ! reproductive organ id: UBERON:0007721 name: interphalangeal joint of pes def: "The interphalangeal articulations of the foot (articulations of the phalanges) are ginglymoid joints, and each has a plantar and two collateral ligaments. The arrangement of these ligaments is similar to that in the metatarsophalangeal articulations: the Extensor tendons supply the places of dorsal ligaments." [Wikipedia:Interphalangeal_articulations_of_the_foot] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "foot interphalangeal joint" EXACT [MESH:A02.835.583.378.900] synonym: "hindlimb digit inter-phalangeal joint" EXACT [EMAPA:36337] @@ -289606,6 +299890,8 @@ relationship: part_of UBERON:0001466 ! pedal digit id: UBERON:0007722 name: interphalangeal joint of manus def: "The interphalangeal articulations of hand are hinge-joints of the phalanges of the hand. There are two sets (except in the thumb): 'proximal interphalangeal joints' (PIP), those between the first (also called proximal) and second (intermediate) phalanges 'distal interphalangeal joints' (DIP), those between the second and third (distal) phalanges A similar group of articulations also function in the toes." [Wikipedia:Interphalangeal_articulations_of_the_hand] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "articulationes digitorum manus" EXACT [Wikipedia:Interphalangeal_articulations_of_the_hand] synonym: "articulationes interphalangeae manus" EXACT [Wikipedia:Interphalangeal_articulations_of_the_hand] @@ -289634,6 +299920,8 @@ property_value: editor_note "consider renaming: 'finger' is ambiguous as the ter id: UBERON:0007723 name: interphalangeal joint of manual digit 1 def: "An interphalangeal joint of manus that is part of a manual digit 1." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "interphalangeal joint of first digit of hand" EXACT [FMA:35312] synonym: "interphalangeal joint of hand digit 1" EXACT [] @@ -289656,6 +299944,8 @@ property_value: taxon_notes "in humans, this connects proximal and distal phalan id: UBERON:0007724 name: interphalangeal joint of pedal digit 1 def: "An interphalangeal joint of pes that is part of a pedal digit 1." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interphalangeal joint of big toe" NARROW SENSU [FMA:35353, NCBITaxon:9606] synonym: "interphalangeal joint of first digit of foot" EXACT [FMA:35353] synonym: "interphalangeal joint of first digit of pes" EXACT [FMA:35353] @@ -289678,6 +299968,8 @@ relationship: part_of UBERON:0003631 ! pedal digit 1 id: UBERON:0007725 name: interphalangeal joint of pedal digit 2 def: "An interphalangeal joint of pes that is part of a pedal digit 2." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interphalangeal joint of pedal digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "interphalangeal joint of second digit of foot" EXACT [FMA:35356] synonym: "interphalangeal joint of second toe" NARROW SENSU [FMA:35356, NCBITaxon:9606] @@ -289693,6 +299985,8 @@ relationship: part_of UBERON:0003632 ! pedal digit 2 id: UBERON:0007726 name: interphalangeal joint of pedal digit 3 def: "An interphalangeal joint of pes that is part of a pedal digit 3." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interphalangeal joint of pedal digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "interphalangeal joint of third digit of foot" EXACT [FMA:35359] synonym: "interphalangeal joint of third toe" NARROW SENSU [FMA:35359, NCBITaxon:9606] @@ -289708,6 +300002,8 @@ relationship: part_of UBERON:0003633 ! pedal digit 3 id: UBERON:0007727 name: interphalangeal joint of pedal digit 4 def: "An interphalangeal joint of pes that is part of a pedal digit 4." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interphalangeal joint of fourth digit of foot" EXACT [FMA:35362] synonym: "interphalangeal joint of fourth toe" NARROW SENSU [FMA:35362, NCBITaxon:9606] synonym: "interphalangeal joint of pedal digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -289723,6 +300019,8 @@ relationship: part_of UBERON:0003634 ! pedal digit 4 id: UBERON:0007728 name: interphalangeal joint of pedal digit 5 def: "An interphalangeal joint of pes that is part of a pedal digit 5." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interphalangeal joint of fifth digit of foot" EXACT [FMA:35365] synonym: "interphalangeal joint of fifth toe" EXACT [FMA:35365] synonym: "interphalangeal joint of little toe" NARROW SENSU [FMA:35365, NCBITaxon:9606] @@ -289739,6 +300037,8 @@ relationship: part_of UBERON:0003635 ! pedal digit 5 id: UBERON:0007729 name: interphalangeal joint of manual digit 2 def: "An interphalangeal joint of manus that is part of a manual digit 2." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interphalangeal joint of index finger" NARROW SENSU [FMA:35397, NCBITaxon:9606] synonym: "interphalangeal joint of manual digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "interphalangeal joint of second digit of hand" EXACT [FMA:35397] @@ -289755,6 +300055,8 @@ relationship: part_of UBERON:0003622 {source="EMAPA"} ! manual digit 2 id: UBERON:0007730 name: interphalangeal joint of manual digit 3 def: "An interphalangeal joint of manus that is part of a manual digit 3." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interphalangeal joint of manual digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "interphalangeal joint of middle finger" NARROW SENSU [FMA:35400, NCBITaxon:9606] synonym: "interphalangeal joint of third digit of hand" EXACT [FMA:35400] @@ -289771,6 +300073,8 @@ relationship: part_of UBERON:0003623 ! manual digit 3 id: UBERON:0007731 name: interphalangeal joint of manual digit 4 def: "An interphalangeal joint of manus that is part of a manual digit 4." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interphalangeal joint of fourth digit of hand" EXACT [FMA:35403] synonym: "interphalangeal joint of fourth finger" EXACT [FMA:35403] synonym: "interphalangeal joint of manual digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -289787,6 +300091,8 @@ relationship: part_of UBERON:0003624 ! manual digit 4 id: UBERON:0007732 name: interphalangeal joint of manual digit 5 def: "An interphalangeal joint of manus that is part of a manual digit 5." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interphalangeal joint of fifth digit of hand" EXACT [FMA:35407] synonym: "interphalangeal joint of fifth finger" EXACT [FMA:35407] synonym: "interphalangeal joint of little finger" NARROW SENSU [FMA:35407, NCBITaxon:9606] @@ -289803,6 +300109,8 @@ relationship: part_of UBERON:0003625 ! manual digit 5 id: UBERON:0007735 name: metacarpophalangeal joint of manual digit 1 def: "A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 1." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "metacarpo-phalangeal joint of digit 1 of fore-paw" NARROW [EMAPA:25057] synonym: "metacarpophalangeal joint of digit 1" EXACT [] @@ -289824,6 +300132,8 @@ relationship: part_of UBERON:0001463 {source="FMA"} ! manual digit 1 id: UBERON:0007738 name: metacarpophalangeal joint of manual digit 2 def: "A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 2." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "metacarpo-phalangeal joint of digit 2 of fore-paw" NARROW [EMAPA:25060] synonym: "metacarpophalangeal joint of digit 2" EXACT [] synonym: "metacarpophalangeal joint of index finger" NARROW SENSU [FMA:35252, NCBITaxon:9606] @@ -289845,6 +300155,8 @@ relationship: part_of UBERON:0003622 {source="FMA"} ! manual digit 2 id: UBERON:0007741 name: metacarpophalangeal joint of manual digit 3 def: "A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 3." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "carpometacarpophalangeal joint of third digit" NARROW SENSU [NCBITaxon:8782] synonym: "metacarpo-phalangeal joint of digit 3 of fore-paw" NARROW [EMAPA:25063] @@ -289868,6 +300180,8 @@ relationship: part_of UBERON:0003623 {source="FMA"} ! manual digit 3 id: UBERON:0007744 name: metacarpophalangeal joint of manual digit 4 def: "A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 4." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "carpometacarpophalangeal joint of fourth digit" NARROW SENSU [NCBITaxon:8782] synonym: "metacarpo-phalangeal joint of digit 4 of fore-paw" NARROW [EMAPA:25066] @@ -289891,6 +300205,8 @@ relationship: part_of UBERON:0003624 {source="FMA"} ! manual digit 4 id: UBERON:0007747 name: metacarpophalangeal joint of manual digit 5 def: "A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 5." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "metacarpo-phalangeal joint of digit 5 of fore-paw" NARROW [EMAPA:25069] synonym: "metacarpophalangeal joint of digit 5" EXACT [] @@ -289913,6 +300229,8 @@ relationship: part_of UBERON:0003625 {source="FMA"} ! manual digit 5 id: UBERON:0007750 name: metatarsophalangeal joint of pedal digit 1 def: "A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 1." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "first metatarsophalangeal joint" EXACT [] synonym: "metatarsophalangeal joint of big toe" NARROW SENSU [FMA:35228, NCBITaxon:9606] @@ -289937,6 +300255,8 @@ property_value: external_ontology_notes "the name of the structure in EMAPA is i id: UBERON:0007753 name: metatarsophalangeal joint of pedal digit 2 def: "A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 2." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "metatarsophalangeal joint of pedal digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "metatarsophalangeal joint of second digit of foot" EXACT [FMA:35231] @@ -289957,6 +300277,8 @@ property_value: external_ontology_notes "the name of the structure in EMAPA is i id: UBERON:0007756 name: metatarsophalangeal joint of pedal digit 3 def: "A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 3." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "metatarsophalangeal joint of pedal digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "metatarsophalangeal joint of third digit of foot" EXACT [FMA:35234] @@ -289977,6 +300299,8 @@ property_value: external_ontology_notes "the name of the structure in EMAPA is i id: UBERON:0007759 name: metatarsophalangeal joint of pedal digit 4 def: "A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 4." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "metatarsophalangeal joint of fourth digit of foot" EXACT [FMA:35237] synonym: "metatarsophalangeal joint of fourth toe" NARROW SENSU [FMA:35237, NCBITaxon:9606] @@ -289997,6 +300321,8 @@ property_value: external_ontology_notes "the name of the structure in EMAPA is i id: UBERON:0007762 name: metatarsophalangeal joint of pedal digit 5 def: "A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 5." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "metatarsophalangeal joint of fifth digit of foot" EXACT [FMA:35240] synonym: "metatarsophalangeal joint of fifth toe" EXACT [FMA:35240] @@ -290018,6 +300344,8 @@ property_value: external_ontology_notes "the name of the structure in EMAPA is i id: UBERON:0007763 name: cerebellum vermis culmen def: "The culmen is the portion of the anterior vermis adjacent to the primary fissure of cerebellum. The culmen and the anterior parts of the quadrangular lobules form the lobus culminis[WP]." [Wikipedia:Culmen_(cerebellum)] +subset: human_subset +subset: mouse_subset synonym: "cerebellum culmen" EXACT [UBERON:cjm] synonym: "culmen" BROAD [BIRNLEX:926, MA:0001001] synonym: "culmen lobule" EXACT [UBERON:cjm] @@ -290042,6 +300370,8 @@ id: UBERON:0007764 name: paramedian reticular nucleus def: "A medullary nucleus that sends its connections to the spinal cord in a mostly ipsilateral manner." [Wikipedia:Paramedian_reticular_nucleus] comment: A medullary nucleus that sends its connections to the spinal cord in a mostly ipsilateral manner, although there is some decussation. It projects to the vermis in the anterior lobe, the pyramis and the uvula. The paramedian nucleus also projects to the contralateral PRN, the gigantocellular nucleus, and the nucleus ambiguous. The paramedian reticular formation is adjacent to the abducens (VI)nucleus in the pons and adjacent to the oculomotor nucleus(III) in the midbrain. The paramedian nucleus receives afferents mostly from the fastigial nucleus in the cerebellum and the cerebral cortex; however, the projections from the spinal cord are very sparse. The descending afferent connections come mostly from the frontal and parietal lobes; however the pontine reticular formation also sends projections to the paramedian reticular nucleus. There are also very sparse innervations from the superior colliculus. Lesions in the paramedian reticular nucleus have been shown to cause a stereotyped increase in the random patterns of motion in rats. The paramedian nuclei on either side of the brain stem have been shown to mediate the horizontal eye movements on their ipsilateral sides. It seems possible that that the random motion patterns of the above rats were caused by an inability to mediate their horizontal eye movements +subset: human_subset +subset: mouse_subset synonym: "nucleus reticularis paramedianus" RELATED [Wikipedia:Paramedian_reticular_nucleus] synonym: "paramedian nucleus reticularis" RELATED OMO:0003011 [Wikipedia:Paramedian_reticular_nucleus] synonym: "ventral paramedian reticular nucleus" EXACT [FMA:72583] @@ -290060,6 +300390,8 @@ property_value: editor_note "TODO - check" xsd:string [Term] id: UBERON:0007767 name: dorsal premammillary nucleus +subset: human_subset +subset: mouse_subset synonym: "premammillary nucleus dorsal part" RELATED [BAMS:PMd] xref: BAMS:PMd xref: DMBA:15719 @@ -290077,6 +300409,8 @@ relationship: mutually_spatially_disjoint_with UBERON:0007768 {source="ABA"} ! v [Term] id: UBERON:0007768 name: ventral premammillary nucleus +subset: human_subset +subset: mouse_subset synonym: "premammillary nucleus ventral part" RELATED [BAMS:PMv] xref: BAMS:PMv xref: FMA:77007 @@ -290094,6 +300428,8 @@ relationship: mutually_spatially_disjoint_with UBERON:0007767 {source="ABA"} ! d id: UBERON:0007769 name: medial preoptic region subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "medial preoptic area" EXACT [ABA:MPO] synonym: "medial preopticarea" RELATED [BAMS:MPO] xref: BAMS:MPA @@ -290123,6 +300459,8 @@ id: UBERON:0007771 name: epidermis gland def: "A gland that is part of a epidermis." [OBOL:automatic] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "epidermal gland" EXACT [] synonym: "gland of epidermis" EXACT [FMA:59153] xref: FMA:59153 @@ -290135,6 +300473,8 @@ relationship: part_of UBERON:0001003 ! skin epidermis id: UBERON:0007772 name: scrotal sweat def: "Any portion of sweat that is produced by a sweat gland of the scrotum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "scrotum sweat" EXACT [OBOL:automatic] synonym: "sweat of scrotal sac" EXACT [OBOL:automatic] synonym: "sweat of scrotum" EXACT [FMA:73266] @@ -290149,6 +300489,8 @@ relationship: produced_by UBERON:0007773 ! scrotal sweat gland id: UBERON:0007773 name: scrotal sweat gland def: "Any sweat gland that is part of a scrotum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: organ_slim xref: EMAPA:29743 is_a: UBERON:0001820 ! sweat gland @@ -290162,6 +300504,8 @@ relationship: part_of UBERON:0001300 ! scrotum id: UBERON:0007774 name: secondary dentition def: "The teeth of adulthood that either replace or are added to the complement of deciduous teeth. (Boucher's Clinical Dental Terminology, 4th ed)." [MESH:A14.254.237] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "adult dentition" RELATED [GAID:1251] synonym: "dentes permanentes" EXACT OMO:0003011 [FMA:75152, FMA:TA] @@ -290183,6 +300527,8 @@ id: UBERON:0007775 name: secondary tooth def: "A tooth that forms after a primary tooth." [http://orcid.org/0000-0002-6601-2165] comment: GAT in FMA +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "dentes permanentes" RELATED OMO:0003011 [Wikipedia:Permanent_teeth] synonym: "permanent tooth" EXACT [FMA:55654] @@ -290201,6 +300547,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/14/Te id: UBERON:0007776 name: unerupted tooth def: "A normal developing tooth which has not yet perforated the oral mucosa or one that fails to erupt in the normal sequence or time interval expected for the type of tooth in a given gender, age, or population group." [MESH:A14.254.860.715] +subset: human_subset +subset: mouse_subset synonym: "unerupted teeth" RELATED [GAID:1268] xref: GAID:1268 xref: MESH:D014097 @@ -290210,6 +300558,8 @@ is_a: UBERON:0001091 ! calcareous tooth id: UBERON:0007777 name: umbilical vein endothelium def: "An endothelium that is part of a umbilical vein." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: BTO:0001416 xref: CALOHA:TS-1081 is_a: UBERON:0001919 ! endothelium of vein @@ -290221,6 +300571,8 @@ relationship: part_of UBERON:0002066 {source="BTO"} ! umbilical vein id: UBERON:0007778 name: umbilical artery endothelium def: "An endothelium that is part of a umbilical artery." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: BTO:0000857 is_a: UBERON:0001917 ! endothelium of artery is_a: UBERON:0001986 {source="BTO"} ! endothelium @@ -290232,6 +300584,8 @@ relationship: part_of UBERON:0001310 {source="BTO"} ! umbilical artery id: UBERON:0007779 name: transudate def: "Any bodily fluid that has passed through a membrane such as the capillary wall, as a result of unbalanced hydrostatic and osmotic forces." [http://medical-dictionary.thefreedictionary.com/transudate] +subset: human_subset +subset: mouse_subset synonym: "plasma ultrafiltrate" RELATED [] xref: FMA:12276 xref: GAID:1195 @@ -290256,6 +300610,8 @@ id: UBERON:0007780 name: exudate def: "Fluids that is discharged from blood vessels usually arising from inflammation or injury." [MESH:A12.383] comment: Some sources include transudate that has been mixed with cells etc +subset: human_subset +subset: mouse_subset xref: MESH:D005122 xref: ncithesaurus:Exudate is_a: UBERON:0000463 ! organism substance @@ -290267,6 +300623,8 @@ relationship: output_of GO:0006954 ! inflammatory response id: UBERON:0007794 name: secretion of serous gland def: "Any fluid produced by a serous gland." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "serosal fluid" EXACT [Wikipedia:Serous_fluid] synonym: "serous fluid" BROAD [] synonym: "serous gland fluid" EXACT [] @@ -290281,6 +300639,8 @@ relationship: produced_by UBERON:0000409 ! serous gland id: UBERON:0007795 name: ascitic fluid def: "The serous fluid which accumulates in the peritoneal cavity in ascites." [MESH:A12.207.119] +subset: human_subset +subset: mouse_subset synonym: "ascites" RELATED [BTO:0000091] synonym: "ascites fluid" RELATED [BTO:0000091] xref: BTO:0000091 @@ -290295,6 +300655,8 @@ id: UBERON:0007798 name: vascular system def: "Anatomical system that consists of all blood and lymph vessels." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: BTO:0001085 xref: CALOHA:TS-2053 @@ -290314,6 +300676,8 @@ property_value: external_ontology_notes "in both MA and BTO, the arterial system id: UBERON:0007799 name: mixed dentition def: "The complement of teeth in the jaws after the eruption of some of the permanent teeth but before all the deciduous teeth are absent. (Boucher's Clinical Dental Terminology, 4th ed)." [MESH:A14.254.229] +subset: human_subset +subset: mouse_subset synonym: "transitional dentition" EXACT [GAID:1250] xref: GAID:1250 xref: MESH:D003818 @@ -290324,6 +300688,8 @@ is_a: UBERON:0003672 {source="GAID"} ! dentition id: UBERON:0007800 name: proatlas def: "A small, paired bony element (more rarely, having fused parts) located between the skull and the atlas in tuataras, crocodiles, chameleons, and many fossil reptiles; it is uncommon in turtles and mammals (hedgehog). The proatlas apparently develops from the ossified neural part of the sclerotome. Externally it resembles the neural arch of the vertebra, since it articulates anteriorly with the lateral occipital bone and posteriorly with the anterior articular process of the atlas." [http://encyclopedia2.thefreedictionary.com/Proatlas] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002413 ! cervical vertebra relationship: anterior_to UBERON:0001092 ! vertebral bone 1 property_value: taxon_notes "sometimes seen in humans as an anomaly." xsd:string @@ -290387,12 +300753,14 @@ id: UBERON:0007805 name: synsacrum def: "A region of the lower vertebral column formed from the fusion of vertebrae." [http://orcid.org/0000-0002-6601-2165] comment: produced by fusion of last thoracics, all lumbars, all sacrals, & first few caudals; +subset: human_subset +subset: mouse_subset xref: AAO:0000740 xref: http://people.eku.edu/ritchisong/birdskeleton.gif xref: SCTID:67943001 xref: Wikipedia:Synsacrum is_a: UBERON:0001474 ! bone element -relationship: derived_from_ancestral_fusion_of UBERON:0002412 ! vertebra +relationship: has_fused_element UBERON:0002412 ! vertebra relationship: overlaps UBERON:0006075 ! sacral region of vertebral column relationship: part_of UBERON:0001130 ! vertebral column relationship: part_of UBERON:0006075 {gci_relation="part_of", gci_filler="NCBITaxon:8292", source="AAO"} ! sacral region of vertebral column @@ -290405,6 +300773,8 @@ property_value: taxon_notes "In birds and dinosaurs, the sacrum is extended by i id: UBERON:0007806 name: connecting stalk def: "A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [http://medical-dictionary.thefreedictionary.com/] +subset: human_subset +subset: mouse_subset xref: BTO:0004705 xref: NCIT:C34132 xref: UMLS:C1516792 {source="ncithesaurus:Connecting_Stalk"} @@ -290416,6 +300786,8 @@ property_value: editor_note "TODO - this is currently defined as a bridge of mes id: UBERON:0007807 name: connecting stalk vasculature def: "A vasculature that is part of a connecting stalk." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connecting stalk blood vessel" RELATED [] synonym: "connecting stalk blood vessels" EXACT [EHDAA2:0000313] synonym: "vasculature of connecting stalk" RELATED [] @@ -290431,6 +300803,8 @@ id: UBERON:0007808 name: adipose tissue of abdominal region def: "Adipose tissue that is located in the abdominal region. This includes any subcutaneous fat, visceral fat or encapsulated adipose tissue depots." [CALOHA:paula, http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/259, MGI:csmith] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "abdominal adipose tissue" RELATED [BTO:0004041] synonym: "abdominal fat" RELATED [BTO:0004041] synonym: "intra-abdominal fat" RELATED [BTO:0004041] @@ -290449,6 +300823,8 @@ property_value: dc:contributor https://github.com/paulacalipho id: UBERON:0007809 name: fascia of Camper def: "The superficial layer (fascia of Camper) is a thick superficial layer of the anterior abdominal wall. It is areolar in texture, and contains in its meshes a varying quantity of adipose tissue. It is found superficial to Scarpa's fascia." [Wikipedia:Fascia_of_Camper] +subset: human_subset +subset: mouse_subset synonym: "adipose layer of superficial fascia of abdomen" EXACT [FMA:19922] synonym: "Camper's fascia" EXACT [Wikipedia:Fascia_of_Camper] synonym: "camper's fascia" EXACT [FMA:19922] @@ -290472,6 +300848,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/28/Gr id: UBERON:0007811 name: craniocervical region def: "The anteriormost subdivision of the body that includes the head, jaws, pharyngeal region and the neck (if present). In vertebrates this is the subdivision that includes the cervical vertebrae." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cephalic area" RELATED [https://github.com/obophenotype/uberon/issues/379] synonym: "cephalic part of animal" RELATED [Wikipedia:Head] @@ -290487,6 +300865,7 @@ xref: NCIT:C12418 xref: SCTID:361355005 xref: UMLS:C0460004 {source="ncithesaurus:Head_and_Neck"} xref: WikipediaCategory:Head_and_neck +xref: ZFA:0001114 is_a: UBERON:0000475 {source="MA"} ! organism subdivision relationship: has_part UBERON:0000033 ! head relationship: has_part UBERON:0000974 {gci_relation="part_of", gci_filler="NCBITaxon:32523"} ! neck @@ -290498,6 +300877,7 @@ relationship: part_of UBERON:0013702 ! body proper id: UBERON:0007812 name: post-anal tail def: "A tail that extends from the posterior tip of the organism to the anus, contains muscle and skeleton." [https://orcid.org/0000-0002-6601-2165] +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "muscular postanal tail" EXACT [] @@ -290528,6 +300908,8 @@ property_value: taxon_notes "present at some time in chordate life history (eg i id: UBERON:0007818 name: major alar cartilage def: "The greater alar cartilage (lower lateral cartilage) is a thin, flexible plate, situated immediately below the preceding, and bent upon itself in such a manner as to form the medial wall and lateral wall of the naris of its own side. The portion which forms the medial wall (crus mediale) is loosely connected with the corresponding portion of the opposite cartilage, the two forming, together with the thickened integument and subjacent tissue, the septum mobile nasi. The part which forms the lateral wall (crus laterale) is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages (cartilagines alares minores; sesamoid cartilages). Above, it is connected by fibrous tissue to the lateral cartilage and front part of the cartilage of the septum; below, it falls short of the margin of the naris, the ala being completed by fatty and fibrous tissue covered by skin. In front, the greater alar cartilages are separated by a notch which corresponds with the apex of the nose." [Wikipedia:Greater_alar_cartilage] +subset: human_subset +subset: mouse_subset synonym: "cartilago alaris major" EXACT [FMA:59504] synonym: "cartilago alaris major" RELATED OMO:0003011 [Wikipedia:Greater_alar_cartilage] synonym: "greater alar cartilage" EXACT [FMA:59504] @@ -290541,6 +300923,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gr id: UBERON:0007819 name: minor alar cartilage def: "The part which forms the lateral wall is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages." [Wikipedia:Lesser_alar_cartilages] +subset: human_subset +subset: mouse_subset synonym: "cartilago alaris minor" RELATED OMO:0003011 [Wikipedia:Lesser_alar_cartilages] synonym: "lesser alar cartilage" EXACT [FMA:59507] synonym: "lesser alar cartilages" RELATED OMO:0003004 [] @@ -290554,6 +300938,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gr id: UBERON:0007820 name: accessory nasal cartilage def: "Small cartilages of the nose connecting the greater alar cartilage and lateral nasal cartilage." [Wikipedia:Accessory_nasal_cartilages] +subset: human_subset +subset: mouse_subset synonym: "cartilago nasi accessoriae" RELATED OMO:0003011 [Wikipedia:Accessory_nasal_cartilage] xref: FMA:59510 xref: SCTID:368124000 @@ -290564,6 +300950,8 @@ is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage id: UBERON:0007821 name: lateral nasal cartilage def: "The lateral cartilage (upper lateral cartilage) is situated below the inferior margin of the nasal bone, and is flattened, and triangular in shape.[WP]." [Wikipedia:Lateral_nasal_cartilage] +subset: human_subset +subset: mouse_subset synonym: "cartilago nasi lateralis" RELATED OMO:0003011 [Wikipedia:Lateral_nasal_cartilage] xref: FMA:59511 xref: SCTID:278944009 @@ -290575,6 +300963,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e1/Gr id: UBERON:0007822 name: vomeronasal cartilage def: "The vomeronasal cartilage (or Jacobson's cartilage) is a narrow strip of cartilage, low on the medial wall of the nasal cavity. It lies between the cartilaginous nasal septum and the vomer. The cartilage lies below, but is not connected to, the rudimentary vomeronasal organ of Jacobson[WP]." [Wikipedia:Vomeronasal_cartilage] +subset: human_subset +subset: mouse_subset synonym: "cartilago vomeronasalis" RELATED OMO:0003011 [Wikipedia:Vomeronasal_cartilage] synonym: "Huschke's cartilage" EXACT [FMA:59514] synonym: "Jacobson's cartilage" EXACT [FMA:59514] @@ -290589,6 +300979,8 @@ id: UBERON:0007823 name: appendage girdle region alt_id: UBERON:0007824 def: "An organism subdivision that encompasses the region containing the pectoral or pelvic girdle. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +subset: human_subset +subset: mouse_subset synonym: "fin girdle" RELATED SENSU [] synonym: "fin girdle region" RELATED SENSU [] synonym: "girdle" BROAD [] @@ -290611,6 +301003,8 @@ property_value: external_definition "An organism subdivision that encompasses th id: UBERON:0007825 name: reticular membrane of spiral organ def: "A reticular lamina of epithelium that is part of a spiral organ of cochlea." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "membrana reticularis organi spiralis" EXACT OMO:0003011 [FMA:77849, FMA:TA] synonym: "reticular lamina" BROAD [MA:0001194] synonym: "reticular lamina of spiral organ" EXACT [OBOL:automatic] @@ -290628,6 +301022,8 @@ relationship: part_of UBERON:0002227 ! spiral organ of cochlea id: UBERON:0007826 name: peritoneal mesentery def: "Mesentery that is located in the peritoneum." [UBERON:cjm] +subset: human_subset +subset: mouse_subset xref: FMA:20570 xref: TAO:0005129 xref: XAO:0000138 @@ -290643,6 +301039,8 @@ relationship: part_of UBERON:0002358 {source="ZFA"} ! peritoneum id: UBERON:0007827 name: external nose def: "External part of the nose containing the external nares." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "nose" RELATED [] xref: EMAPA:37831 {source="MA:th"} @@ -290663,6 +301061,8 @@ property_value: external_definition "Subdivision of face, the exterior of the no id: UBERON:0007828 name: girdle bone/zone def: "A bone that is part of a appendage girdle region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "girdle bone" EXACT [MA:0000291] xref: EMAPA:35379 xref: MA:0000291 @@ -290678,6 +301078,8 @@ id: UBERON:0007829 name: pectoral girdle bone def: "A bone that is part of a pectoral girdle region." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "bone of pectoral girdle" EXACT [] xref: EMAPA:35669 @@ -290695,6 +301097,8 @@ id: UBERON:0007830 name: pelvic girdle bone/zone def: "A bone element or fused bone that is part of pelvic girdle." [https://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: vertebrate_core synonym: "bone of pelvic girdle" EXACT [] @@ -290722,6 +301126,8 @@ id: UBERON:0007831 name: pectoral girdle skeleton def: "A subdivision of a limb or fin skeleton consisting of bones which connects the upper limb or fin to the axial skeleton on each side. It consists of the clavicle and scapula in humans and, in those species with three bones in the pectoral girdle, the coracoid. Some mammalian species (e.g. the dog and the horse) have only the scapula. In humans, the only joints between the shoulder girdle and axial skeleton are the sternoclavicular joints on each side. No joint exists between each scapula and the rib cage; instead the muscular connection between the two permits relatively great mobility of the shoulder girdle in relation to the pelvic girdle. In those species having only the scapula, no joint exists between the forelimb and the thorax, the only attachment being muscular[WP]. Examples: There are only two instances, right and left pectoral girdle skeletons." [Wikipedia:Pectoral_girdle] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "cingulum pectorale" RELATED OMO:0003011 [Wikipedia:Pectoral_girdle] synonym: "pectoral girdle" RELATED INCONSISTENT [VSAO:0000156] @@ -290763,6 +301169,8 @@ id: UBERON:0007832 name: pelvic girdle skeleton def: "Skeletal subdivision consisting of a set of bones linking the axial series to the hindlimb zeugopodium and offering anchoring areas for hindlimb and caudal musculature." [VSAO:0000155, Wikipedia:Pelvis] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: vertebrate_core synonym: "pelvic girdle" RELATED INCONSISTENT [VSAO:0000155] synonym: "pelvic girdle skeleton" EXACT [VSAO:0000155] @@ -290807,6 +301215,8 @@ property_value: homology_notes "The pelvic girdle is never joined by contributio id: UBERON:0007833 name: osseus semicircular canal def: "The organ of balance composed of three long bony tubes of the labyrinth." [MESH:A09.246.631.663, MGI:cwg, MP:0002428] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "osseous semicircular canal" EXACT [OBOL:automatic] xref: MA:0000250 @@ -290821,6 +301231,8 @@ id: UBERON:0007834 name: lumbar spinal cord ventral commissure def: "A spinal cord ventral commissure that is part of a lumbar spinal cord." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lumbar spinal cord anterior commissure" EXACT [BIRNLEX:1326] xref: BIRNLEX:1326 is_a: UBERON:0004170 ! spinal cord ventral commissure @@ -290834,6 +301246,8 @@ id: UBERON:0007835 name: sacral spinal cord ventral commissure def: "A spinal cord ventral commissure that is part of a sacral spinal cord." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "sacral spinal cord anterior commissure" EXACT [BIRNLEX:1528] xref: BIRNLEX:1528 is_a: UBERON:0004170 ! spinal cord ventral commissure @@ -290847,6 +301261,8 @@ id: UBERON:0007836 name: cervical spinal cord ventral commissure def: "A spinal cord ventral commissure that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cervical spinal cord anterior commissure" EXACT [BIRNLEX:1552] xref: BIRNLEX:1552 is_a: UBERON:0004170 ! spinal cord ventral commissure @@ -290860,6 +301276,8 @@ id: UBERON:0007837 name: thoracic spinal cord ventral commissure def: "A spinal cord ventral commissure that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "thoracic spinal cord anterior commissure" EXACT [BIRNLEX:1556] xref: BIRNLEX:1556 is_a: UBERON:0004170 ! spinal cord ventral commissure @@ -290871,6 +301289,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0007838 name: spinal cord white commissure +subset: human_subset +subset: mouse_subset synonym: "white commissure of spinal cord" EXACT [FMA:77033] xref: FMA:77033 xref: SCTID:423957000 @@ -290881,6 +301301,8 @@ relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0007840 name: spinal cord dorsal white commissure +subset: human_subset +subset: mouse_subset synonym: "commissura alba posterior medullae spinalis" EXACT OMO:0003011 [FMA:77034, FMA:TA] synonym: "dorsal white commissure of spinal cord" EXACT [FMA:77034] synonym: "posterior white commissure of spinal cord" EXACT [FMA:77034] @@ -290898,9 +301320,9 @@ synonym: "wishbone" RELATED [Wikipedia:Furcula] xref: Wikipedia:Furcula is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone -relationship: derived_from_ancestral_fusion_of UBERON:0008255 ! right clavicle -relationship: derived_from_ancestral_fusion_of UBERON:0008256 ! left clavicle -relationship: derived_from_ancestral_fusion_of UBERON:0011655 ! interclavicle +relationship: has_fused_element UBERON:0008255 ! right clavicle +relationship: has_fused_element UBERON:0008256 ! left clavicle +relationship: has_fused_element UBERON:0011655 ! interclavicle relationship: in_taxon NCBITaxon:8492 {source="http://people.eku.edu/ritchisong/342notes5.htm"} ! Archosauria relationship: part_of UBERON:0007831 ! pectoral girdle skeleton relationship: present_in_taxon NCBITaxon:436495 ! Tyrannosaurus rex @@ -290912,6 +301334,8 @@ property_value: taxon_notes "Found in both avian and non-avian theropods includi id: UBERON:0007842 name: membrane bone def: "Bone element that arises as a result of intramembranous ossification." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/267, VSAO:0000023] +subset: human_subset +subset: mouse_subset synonym: "membrane bones" RELATED OMO:0003004 [ZFA:0001636] xref: AEO:0000085 xref: EHDAA2:0003085 @@ -290929,6 +301353,8 @@ id: UBERON:0007843 name: uncinate process of ribs def: "A posterior projection from proximal rib segments. Offers attachment sites for respiratory and shoulder muscles as well as adding structural support to the trunk skeleton[Kardong 2012]." [https://github.com/obophenotype/uberon/issues/96, ISBN:0073040584, PHENOSCAPE:ad] comment: WP: Although bony uncinate processes are unique to birds, cartilaginous uncinate processes are present in crocodiles. The uncinate process has also been reported in Sphenodon, Caudipteryx, oviraptorids, Confuciusornis and Chaoyangia however it does not occur in Archaeopteryx +subset: human_subset +subset: mouse_subset synonym: "uncinate process" BROAD INCONSISTENT [AAO:0000741] xref: AAO:0000741 xref: Wikipedia:Uncinate_processes_of_ribs @@ -290945,6 +301371,8 @@ property_value: external_definition "Posteriorly directed process (occasionally id: UBERON:0007844 name: cartilage element def: "Skeletal element that is composed of cartilage tissue and may be permanent or transient." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000000] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "cartilage" RELATED [VSAO:0000000] @@ -290969,6 +301397,8 @@ property_value: external_ontology_notes "TAO still mixes tissue and element" xsd id: UBERON:0007845 name: regular connective tissue def: "Connective tissue, which consists of fibroblasts, the intercellular matrix of which contains a regular network of collagen and elastic fiber bundles. Examples: bone (tissue), cartilage (tissue), dense regular connective tissue." [FMA:20103] +subset: human_subset +subset: mouse_subset xref: FMA:20103 is_a: UBERON:0002384 {source="FMA"} ! connective tissue disjoint_from: UBERON:0011821 ! irregular connective tissue @@ -290981,6 +301411,8 @@ property_value: editor_note "the connective tissue hierarchy largely follows FMA id: UBERON:0007846 name: dense regular connective tissue def: "Connective tissue that is dominated by collagen fibres organized into a definitive pattern (e.g., parallel to one another), with comparatively fewer cells (mostly fibroblasts)." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000050] +subset: human_subset +subset: mouse_subset synonym: "dense fibrous connective tissue" EXACT [FMA:64781] synonym: "dense regular collagenous connective tissue" EXACT [FMA:64781] synonym: "dense regular collagenous tissue" EXACT [FMA:64781] @@ -291008,6 +301440,8 @@ id: UBERON:0007862 name: perichordal tissue def: "Fibrous connective tissue that surrounds the notochord; includes a layer of elastin." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000054] comment: Derived from cells surrounding the notochord (possibly the slerotome). Disparate from (not derived from) notochord. +subset: human_subset +subset: mouse_subset synonym: "notochord" RELATED [VSAO:curator] synonym: "perichordal connective tissue" EXACT [ZFA:0001633] synonym: "perichordal sheath" EXACT [VSAO:curator] @@ -291032,6 +301466,8 @@ property_value: external_definition "Portion of connective tissue which surround id: UBERON:0007914 name: bone of craniocervical region def: "A bone that is part of a craniocervical region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cranial bone" RELATED [] synonym: "head or neck bone" EXACT [MA:0000569] xref: EMAPA:37245 {source="MA:th"} @@ -291045,6 +301481,8 @@ relationship: part_of UBERON:0007811 {source="MA"} ! craniocervical region id: UBERON:0007958 name: central carpal bone def: "A small bone occasionally found at the dorsal aspect of the wrist between the scaphoid, capitate, and trapezoid; it is developed as an independent cartilage in early foetal life but usually becomes fused with the scaphoid; it occurs normally in most monkeys." [http://www.medilexicon.com/medicaldictionary.php?t=63518] +subset: human_subset +subset: mouse_subset synonym: "central bone" BROAD [http://www.medilexicon.com/medicaldictionary.php?t=63518] synonym: "central carpals" EXACT [] synonym: "centrale" BROAD [MA:0001344] @@ -291060,6 +301498,8 @@ is_a: UBERON:0012131 ! centrale [Term] id: UBERON:0007959 name: falciform carpal bone +subset: human_subset +subset: mouse_subset synonym: "os falciform" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "os falciforme" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:36171 @@ -291071,19 +301511,23 @@ property_value: editor_note "TODO - check relationship to radial sesamoid" xsd:s id: UBERON:0007960 name: scapholunate def: "The combined scaphoid and lunate bones." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "intermedioradial carpal bone" RELATED [MA:0001346] synonym: "scapholunate bone" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "scapholunatum" RELATED [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:36166 xref: MA:0001346 is_a: UBERON:0001480 {source="MA"} ! proximal carpal bone -relationship: derived_from_ancestral_fusion_of UBERON:0001427 ! radiale -relationship: derived_from_ancestral_fusion_of UBERON:0001428 ! intermedium +relationship: has_fused_element UBERON:0001427 ! radiale +relationship: has_fused_element UBERON:0001428 ! intermedium property_value: taxon_notes "present in mouse[based on MA], carnivora[Websters] and macropods" xsd:string {source="WP"} [Term] id: UBERON:0007990 name: proximal sesamoid bone of pes +subset: human_subset +subset: mouse_subset synonym: "proximal sesamoid bone of foot" EXACT [MA:0001376] xref: EMAPA:37728 {source="MA:th"} xref: MA:0001376 @@ -291095,6 +301539,8 @@ relationship: part_of UBERON:0001466 ! pedal digit [Term] id: UBERON:0007991 name: proximal sesamoid bone of manus +subset: human_subset +subset: mouse_subset synonym: "proximal sesamoid bone of hand" EXACT [MA:0001377] xref: EMAPA:37729 {source="MA:th"} xref: MA:0001377 @@ -291106,6 +301552,8 @@ relationship: part_of UBERON:0002389 ! manual digit [Term] id: UBERON:0007993 name: ulnar sesamoid bone +subset: human_subset +subset: mouse_subset synonym: "ulnar sesamoid" EXACT [] xref: EMAPA:36621 xref: MA:0001379 @@ -291119,6 +301567,8 @@ property_value: editor_note "compare with pisiform" xsd:string id: UBERON:0007997 name: sesamoid bone of manus def: "A sesamoid bone that is part of a manus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "sesamoid bone of hand" EXACT [FMA:42353] xref: FMA:42353 xref: SCTID:368448000 @@ -291134,6 +301584,8 @@ relationship: part_of UBERON:0002398 ! manus id: UBERON:0008000 name: sesamoid bone of pes def: "A sesamoid bone that is part of a pes." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "sesamoid bone of foot" EXACT [FMA:45096] xref: FMA:45096 xref: SCTID:244675002 @@ -291149,6 +301601,8 @@ relationship: part_of UBERON:0002387 ! pes id: UBERON:0008001 name: irregular bone def: "The irregular bones are bones which, from their peculiar form, cannot be grouped as long bone, short bone, flat bone or sesamoid bone. Irregular bones serve various purposes in the body, such as protection of nervous tissue, affording multiple anchor points for skeletal muscle attachment (as with the sacrum), and maintaining pharynx and trachea support, and tongue attachment (such as the hyoid bone). They consist of cancellous tissue enclosed within a thin layer of compact bone. The irregular bones are: the vertebrC&, sacrum, coccyx, temporal, sphenoid, ethmoid, zygomatic, maxilla, mandible, palatine, inferior nasal concha, and hyoid." [Wikipedia:Irregular_bone] +subset: human_subset +subset: mouse_subset synonym: "os irregulare" EXACT [] synonym: "os irregulare" RELATED OMO:0003011 [Wikipedia:Irregular_bone] xref: FMA:7477 @@ -291163,6 +301617,8 @@ id: UBERON:0008114 name: joint of girdle def: "A skeletal joint that is part of a appendage girdle region." [OBOL:automatic] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "girdle joint" EXACT [OBOL:automatic] xref: MA:0001505 is_a: UBERON:0000982 {source="MA"} ! skeletal joint @@ -291176,6 +301632,8 @@ relationship: part_of UBERON:0007823 ! appendage girdle region id: UBERON:0008115 name: surface of cartilage def: "An anatomical surface that is part of a cartilage element." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cartilage surface" EXACT [FMA:76668] xref: FMA:76668 is_a: UBERON:0036215 ! anatomical surface region @@ -291187,6 +301645,8 @@ relationship: part_of UBERON:0007844 ! cartilage element [Term] id: UBERON:0008124 name: joint articular surface +subset: human_subset +subset: mouse_subset xref: EMAPA:37620 {source="MA:th"} xref: MA:0001518 is_a: UBERON:0008115 ! surface of cartilage @@ -291197,6 +301657,8 @@ property_value: external_ontology_notes "FMA has multiple 'Articular surface of id: UBERON:0008187 name: hypertrophic cartilage zone comment: see also VSAO:0000098 +subset: human_subset +subset: mouse_subset xref: EMAPA:35415 xref: MA:0002849 is_a: UBERON:0002418 ! cartilage tissue @@ -291206,6 +301668,8 @@ relationship: part_of UBERON:0004763 {source="MA"} ! endochondral bone tissue id: UBERON:0008188 name: tendon of biceps brachii def: "A tendon that attaches_to a biceps brachii." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "biceps brachii tendon" EXACT [FMA:38152] synonym: "tendon of biceps brachii muscle" RELATED [FMA:38152] xref: EMAPA:25053 @@ -291221,6 +301685,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0008192 name: tendon of triceps brachii def: "A tendon that attaches_to a triceps brachii." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "tendon of triceps brachii muscle" RELATED [FMA:38380] synonym: "triceps brachii tendon" EXACT [FMA:38380] synonym: "triceps tendon" EXACT [] @@ -291236,6 +301702,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0008193 name: pneumatized bone def: "A bone that is hollow or contains many air cells, such as the mastoid process of the temporal bone[TMD]." [http://www.medilexicon.com/medicaldictionary.php?t=11303] +subset: human_subset +subset: mouse_subset synonym: "hollow bone" RELATED [] synonym: "os pneumaticum" EXACT [FMA:7478] synonym: "pneumatic bone" EXACT [FMA:7478] @@ -291260,9 +301728,9 @@ is_a: UBERON:0015011 ! tibiotarsus endochondral element intersection_of: UBERON:0015011 ! tibiotarsus endochondral element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue relationship: composed_primarily_of UBERON:0002481 ! bone tissue -relationship: derived_from_ancestral_fusion_of UBERON:0000979 ! tibia -relationship: derived_from_ancestral_fusion_of UBERON:0001447 ! tarsal bone relationship: develops_from UBERON:0010902 ! tibiotarsus cartilage element +relationship: has_fused_element UBERON:0000979 ! tibia +relationship: has_fused_element UBERON:0001447 ! tarsal bone relationship: in_taxon NCBITaxon:8492 ! Archosauria relationship: part_of UBERON:0001441 ! hindlimb skeleton @@ -291276,9 +301744,9 @@ is_a: UBERON:0015012 ! tarsometatarsus endochondral element intersection_of: UBERON:0015012 ! tarsometatarsus endochondral element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue relationship: composed_primarily_of UBERON:0002481 ! bone tissue -relationship: derived_from_ancestral_fusion_of UBERON:0001448 ! metatarsal bone -relationship: derived_from_ancestral_fusion_of UBERON:0009879 ! tarsal skeleton relationship: develops_from UBERON:0010900 ! tarsometatarsus cartilage element +relationship: has_fused_element UBERON:0001448 ! metatarsal bone +relationship: has_fused_element UBERON:0009879 ! tarsal skeleton relationship: in_taxon NCBITaxon:8492 ! Archosauria relationship: part_of UBERON:0001445 ! skeleton of pes property_value: taxon_notes "found in birds" xsd:string {source="VSAO"} @@ -291287,6 +301755,8 @@ property_value: taxon_notes "found in birds" xsd:string {source="VSAO"} id: UBERON:0008196 name: muscle of pectoral girdle def: "Any muscle organ that is part of a pectoral girdle region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "muscle of shoulder girdle" EXACT [FMA:37347] synonym: "pectoral girdle muscle" EXACT [FMA:37347] @@ -291303,6 +301773,8 @@ id: UBERON:0008198 name: nail plate def: "The nail plate is the hard and translucent portion of the nail, composed of keratin." [https://github.com/obophenotype/uberon/issues/20, https://sourceforge.net/p/geneontology/ontology-requests/8479/, Wikipedia:Nail_plate] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lamina unguis" RELATED OMO:0003011 [Wikipedia:Nail_plate] xref: EMAPA:35583 xref: MA:0002708 @@ -291324,6 +301796,8 @@ property_value: external_ontology_notes "in FMA, the nail is the nail plate" xsd id: UBERON:0008199 name: chin def: "A subdivision of the face that is the anteriormost part of the lower jaw region." [TAO:0002254, Wikipedia:Chin] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "mental part of face" EXACT [FMA:46495] synonym: "mental region" EXACT [FMA:46495] @@ -291351,6 +301825,8 @@ property_value: taxon_notes "In humans, the chin is the lowermost part of the fa id: UBERON:0008200 name: forehead def: "The part of the face above the eyes[MESH]. In human anatomy, the forehead is the fore part of the head. It is, formally, an area of the head bounded by three features, two of the skull and one of the scalp. The top of the forehead is marked by the hairline, the edge of the area where hair on the scalp grows. The bottom of the forehead is marked by the supraorbital ridge, the bone feature of the skull above the eyes. The two sides of the forehead are marked by the temporal ridge, a bone feature that links the supraorbital ridge to the coronal suture line and beyond[WP]." [MESH:A01.456.505.580, Wikipedia:Forehead] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fore head" RELATED [Wikipedia:Forehead] synonym: "sinciput" RELATED OMO:0003011 [Wikipedia:Forehead] @@ -291388,6 +301864,8 @@ property_value: terminology_notes "we synonymize osteoderm and osteoscute with s id: UBERON:0008202 name: bone of hip region subset: grouping_class +subset: human_subset +subset: mouse_subset subset: non_informative subset: pheno_slim xref: EMAPA:37308 {source="MA:th"} @@ -291403,6 +301881,8 @@ property_value: external_ontology_notes "in MA, this includes the femur. i.e. pe id: UBERON:0008203 name: pelvic cavity def: "The part of the ventral body cavity that is within the pelvis." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "cavitas pelvis" RELATED OMO:0003011 [Wikipedia:Pelvic_cavity] synonym: "space of pelvic compartment" EXACT [FMA:9738] xref: EMAPA:37235 {source="MA:th"} @@ -291424,6 +301904,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ee/Sc id: UBERON:0008229 name: craniocervical region musculature def: "Musculature system of the pharyngeal and head regions." [ZFA:0000328, ZFA:curator] +subset: human_subset +subset: mouse_subset synonym: "head muscles" RELATED [ZFA:0000328] synonym: "head or neck muscle" EXACT [MA:0000571] synonym: "head or neck muscle" RELATED [MA:0000571] @@ -291441,6 +301923,8 @@ property_value: external_ontology_notes "in MA this is restricted to skeletal mu id: UBERON:0008230 name: tibialis def: "Either of two muscles of the calf of the leg." [Fast_Health_Medical_Dictionary:http\://www.fasthealth.com/dictionary/] +subset: human_subset +subset: mouse_subset synonym: "tibialis muscle" EXACT [MA:0002425] xref: BTO:0000864 xref: EMAPA:35867 @@ -291455,6 +301939,8 @@ relationship: part_of UBERON:0003823 ! hindlimb zeugopod id: UBERON:0008231 name: dorsal thoracic segment of trunk def: "Subdivision of thorax, which in humans is the posterior part of the thorax and is demarcated from the chest by the external surface of the posterolateral part of the rib cage and the anterior surface of the thoracic vertebral column; together with the chest, it constitutes the thorax." [FMA:24217] +subset: human_subset +subset: mouse_subset synonym: "back of thorax" RELATED [FMA:24217] synonym: "dorsum of thorax" EXACT [FMA:24217] synonym: "posterior part of thorax" EXACT [FMA:24217] @@ -291473,6 +301959,8 @@ relationship: part_of UBERON:0011270 {source="FMA"} ! dorsal trunk id: UBERON:0008242 name: lower back muscle def: "A muscle of back that is part of a lower back." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37262 {source="MA:th"} xref: MA:0000502 xref: SCTID:317178000 @@ -291486,6 +301974,8 @@ relationship: part_of UBERON:0005462 {source="MA"} ! lower back id: UBERON:0008243 name: upper back muscle def: "A muscle of back that is part of a dorsal thoracic segment of trunk." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37261 {source="MA:th"} xref: MA:0000508 xref: SCTID:305071003 @@ -291499,6 +301989,8 @@ relationship: part_of UBERON:0008231 {source="MA"} ! dorsal thoracic segment of id: UBERON:0008245 name: pennate muscle def: "A pennate muscle (also called a penniform muscle) is a muscle with fascicles that attach obliquely (in a slanting position) to its tendon. These types of muscles generally allow better stabilization and force production but less flexibility. Individual muscle fibers are formed into bundles of fasciculi and these bundles of fasciculi are formed into bundles of fascicles which compose the entire muscle itself. In a pennate muscle, the fascicles will form an angle with its central tendon. If all the fascicles are on the same side of the tendon, the pennate muscle is called unipennate. Examples of this include certain muscles in the manus. If there are fascicles on both sides of the central tendon, the pennate muscle is called bipennate. The rectus femoris, a large muscle in the quadriceps, is typical. If the central tendon branches within a pennate muscle, the muscle is called multipennate, as seen in the deltoid muscle in the shoulder." [Wikipedia:Pennate_muscle] +subset: human_subset +subset: mouse_subset synonym: "penniform muscle" RELATED [Wikipedia:Pennate_muscle] xref: FMA:74993 xref: Wikipedia:Pennate_muscle @@ -291595,6 +302087,8 @@ relationship: part_of UBERON:0000165 {source="BTO"} ! mouth id: UBERON:0008254 name: styliform cartilage def: "A styloform element in a cartilaginous state." [https://github.com/obophenotype/uberon/issues/695] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010883 ! forelimb cartilage element is_a: UBERON:0035561 ! styliform element intersection_of: UBERON:0035561 ! styliform element @@ -291610,6 +302104,8 @@ property_value: external_definition "shaft of skeletal tissue that articulates w id: UBERON:0008255 name: right clavicle def: "A clavicle that is in the right side of a entire appendicular skeleton." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:13322 is_a: UBERON:0001105 {source="FMA"} ! clavicle bone intersection_of: UBERON:0001105 ! clavicle bone @@ -291621,6 +302117,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0008256 name: left clavicle def: "A clavicle that is in the left side of a entire appendicular skeleton." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:13323 is_a: UBERON:0001105 {source="FMA"} ! clavicle bone intersection_of: UBERON:0001105 ! clavicle bone @@ -291632,6 +302130,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0008257 name: radial sesamoid def: "In the giant panda, a large digitlike preaxial element that articulates with the scapholunatum and the medial border of the first metacarpal." [ISBN:0226313379] +subset: human_subset +subset: mouse_subset synonym: "os sesamoideum radiale" EXACT [ISBN:0226313379] is_a: UBERON:0001435 ! carpal bone is_a: UBERON:0007997 ! sesamoid bone of manus @@ -291680,6 +302180,7 @@ id: UBERON:0008260 name: spine appendage def: "A hard, thorny or needle-like structure which occurs on various animals. Animals such as porcupines and sea urchins grow spines as a self-defense mechanism. Spines are often formed of keratin. Other animals with spines are hedgehogs, spiny mice and at least two ornithischian dinosaurs." [Wikipedia:Spine_(zoology)] subset: grouping_class +subset: mouse_subset synonym: "spine" BROAD [] synonym: "spiny appendage" RELATED [] xref: Wikipedia:Spine_(zoology) @@ -291732,6 +302233,8 @@ relationship: existence_starts_and_ends_during UBERON:0008264 ! echinopluteus la id: UBERON:0008266 name: periodontal ligament def: "The fibrous connective tissue that surrounds the root of a tooth, separating it from and attaching it to the alveolar bone. It extends from the base of the gingival mucosa to the fundus of the bony socket, and its main function is to hold the tooth in its socket[BTO]." [BTO:0001020, https://github.com/obophenotype/uberon/issues/1233, https://github.com/obophenotype/uberon/issues/21, Wikipedia:Periodontal_fiber] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "alveolar periosteum" RELATED [BTO:0001020] synonym: "alveolodental ligament" RELATED [BTO:0001020] @@ -291780,6 +302283,8 @@ property_value: external_ontology_notes "FMA treats periodontium and periodontal id: UBERON:0008267 name: left supracardinal vein def: "The left thoracic supracardinal vein loses its connection with the left posterior cardinal veins and left sinus horn and subsequently drains into the right supracardinal system." [ISBN:0443065837] +subset: human_subset +subset: mouse_subset xref: SCTID:361449001 is_a: UBERON:0006300 ! supracardinal vein @@ -291787,6 +302292,8 @@ is_a: UBERON:0006300 ! supracardinal vein id: UBERON:0008268 name: right supracardinal vein def: "The right supracardinal vein loses its connection with the posterior cardinal vein and makes a new anastomosis with the segments of the superior vena cava derived from the anterior cardinal vein, becoming the azygos vein." [ISBN:0443065837] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004539 xref: SCTID:361450001 is_a: UBERON:0006300 ! supracardinal vein @@ -291907,6 +302414,8 @@ relationship: in_taxon NCBITaxon:6073 ! Cnidaria id: UBERON:0008281 name: tooth bud def: "A knoblike tooth primordium that develops into the mature tooth and consists of enamel organ, dental papilla, and dental sac enclosing them." [http://medical-dictionary.thefreedictionary.com/tooth+germ, UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "dental bud" EXACT [FMA:306006] synonym: "dental germ" EXACT [http://medical-dictionary.thefreedictionary.com/tooth+germ] synonym: "tooth germ" EXACT [Wikipedia:Tooth_development] @@ -292078,6 +302587,8 @@ is_a: UBERON:0008292 ! vaned feather id: UBERON:0008304 name: inner chondrogenic layer of perichondrium def: "The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The chondrogenic layer remains undifferentiated and can form chondroblasts or chondrocytes." [Wikipedia:The_Free_Encyclopedia] +subset: human_subset +subset: mouse_subset xref: BTO:0005090 xref: Wikipedia:The_Free_Encyclopedia is_a: UBERON:0002384 ! connective tissue @@ -292088,6 +302599,8 @@ relationship: part_of UBERON:0002222 {source="BTO"} ! perichondrium id: UBERON:0008305 name: outer fibrous layer of perichondrium def: "The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The fibrous layer contains fibroblasts, which produce collagenous fibers." [Wikipedia:The_Free_Encyclopedia] +subset: human_subset +subset: mouse_subset xref: BTO:0005091 xref: Wikipedia:The_Free_Encyclopedia is_a: UBERON:0002384 ! connective tissue @@ -292097,6 +302610,8 @@ relationship: part_of UBERON:0002222 {source="BTO"} ! perichondrium id: UBERON:0008307 name: heart endothelium def: "An endothelium that is part of a heart [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cardiac endothelium" RELATED [BTO:0004293] xref: BTO:0004293 is_a: UBERON:0004852 ! cardiovascular system endothelium @@ -292109,6 +302624,8 @@ property_value: curator_notes "this class includes any endothelia that are part id: UBERON:0008310 name: nasopharyngeal gland def: "A gland that is part of a nasopharynx." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: organ_slim xref: FMA:55076 xref: SCTID:178973008 @@ -292122,6 +302639,8 @@ relationship: part_of UBERON:0001728 ! nasopharynx id: UBERON:0008311 name: penile bulb artery def: "A short vessel of large caliber which arises from the internal pudendal between the two layers of fascia of the urogenital diaphragm; it passes medialward, pierces the inferior fascia of the urogenital diaphragm, and gives off branches which ramify in the bulb of the urethra and in the posterior part of the corpus spongiosum. It gives off a small branch to the bulbo-urethral gland." [Wikipedia:Bulbourethral_artery] +subset: human_subset +subset: mouse_subset synonym: "arteria bulbi penis" EXACT [BTO:0005087] synonym: "artery of bulb of penis" EXACT [FMA:20864] synonym: "bulbourethral artery" RELATED [BTO:0005087] @@ -292143,6 +302662,8 @@ id: UBERON:0008320 name: common penile artery def: "The artery that serves blood to the penis. It subdivides into three arteries, the bulbourethral artery, the dorsal artery of the penis and the cavernosal artery." [Wikipedia:Penile_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "artery of penis" RELATED [FMA:66318] synonym: "penile artery" RELATED [BTO:0005085] xref: BTO:0005085 @@ -292163,6 +302684,8 @@ id: UBERON:0008321 name: deep artery of penis def: "The deep artery of the penis (artery to the corpus cavernosum), one of the terminal branches of the internal pudendal, arises from that vessel while it is situated between the two fascia of the urogenital diaphragm (deep perineal pouch). It pierces the inferior fascia, and, entering the crus penis obliquely, runs forward in the center of the corpus cavernosum penis, to which its branches are distributed." [Wikipedia:Deep_artery_of_the_penis] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria cavernosa penis" RELATED [BTO:0005086] synonym: "arteria profunda penis" EXACT [BTO:0005086] synonym: "arteria profunda penis" RELATED OMO:0003011 [Wikipedia:Deep_artery_of_the_penis] @@ -292190,6 +302713,8 @@ id: UBERON:0008322 name: deep artery of clitoris def: "The deep artery of clitoris is a branch of the internal pudendal artery." [Wikipedia:Deep_artery_of_clitoris] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria profunda clitoridis" RELATED OMO:0003011 [Wikipedia:Deep_artery_of_clitoris] xref: FMA:20870 xref: SCTID:244297008 @@ -292211,6 +302736,8 @@ id: UBERON:0008323 name: dorsal artery of clitoris def: "The dorsal artery of clitoris is a branch of the internal pudendal artery." [Wikipedia:Dorsal_artery_of_clitoris] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:20867 xref: SCTID:244298003 xref: Wikipedia:Dorsal_artery_of_clitoris @@ -292226,6 +302753,8 @@ id: UBERON:0008324 name: erectile tissue def: "With numerous vascular spaces that may become engorged with blood." [Wikipedia:Erectile_tissue] comment: Examples: corpus cavernosum or penis or clitoris +subset: human_subset +subset: mouse_subset xref: Wikipedia:Erectile_tissue is_a: UBERON:0000479 ! tissue relationship: in_taxon NCBITaxon:33213 ! Bilateria @@ -292234,6 +302763,8 @@ relationship: in_taxon NCBITaxon:33213 ! Bilateria id: UBERON:0008330 name: vestibule of vagina def: "The space posterior to the glans clitoridis, between the labia minora; located within the vestibule are the openings of the vagina, the urethra, and the ducts of the lesser vestibular glands, the greater vestibular (Bartholin's) glands, and the paraurethral (Skene's) glands, which release mucus into the vestibule to maintain a moist, lubricated vestibular environment; the vestibule is also moistened by secretions from the cervical mucus glands located in the inferior region of the uterus." [MGI:anna, MP:0011848] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "introitus" RELATED [FMA:19984] synonym: "vagina vestibule" EXACT [MP:0011848] @@ -292257,6 +302788,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f3/Sc id: UBERON:0008331 name: clitoral smooth muscle def: "A smooth muscle tissue that is part of a clitoris." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "clitoris smooth muscle" RELATED [BTO:0005000] xref: BTO:0005000 is_a: UBERON:0001135 ! smooth muscle tissue @@ -292268,6 +302801,8 @@ relationship: part_of UBERON:0002411 ! clitoris [Term] id: UBERON:0008332 name: hilum of neuraxis +subset: human_subset +subset: mouse_subset synonym: "neuraxis hilum" EXACT [FMA:83871] xref: FMA:83871 is_a: UBERON:0011215 ! central nervous system cell part cluster @@ -292277,6 +302812,8 @@ relationship: part_of UBERON:0002316 ! white matter id: UBERON:0008333 name: hilum of inferior olivary complex def: "The white core of the inferior olivary nucleus of the medulla oblongata, most prominent medially." [Dorlands_Medical_Dictionary:MerckSource] +subset: human_subset +subset: mouse_subset synonym: "hilum nuclei olivaris caudalis" RELATED [BTO:0002300] synonym: "hilum nuclei olivaris inferioris" EXACT OMO:0003011 [FMA:TA] synonym: "hilum of caudal olivary nucleus" RELATED [BTO:0002300] @@ -292296,6 +302833,8 @@ relationship: part_of UBERON:0007244 {source="BTO"} ! inferior olivary nucleus [Term] id: UBERON:0008334 name: subarachnoid sulcus +subset: human_subset +subset: mouse_subset xref: FMA:75759 is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0000315 ! subarachnoid space @@ -292304,6 +302843,8 @@ relationship: part_of UBERON:0000315 ! subarachnoid space id: UBERON:0008335 name: ventrolateral sulcus of medulla oblongata def: "A longitudinal sulcus on the anterior surface of the medulla oblongata, lateral to the pyramid, from which emerge the fibers of the hypoglossal nerve." [BTO:0002777] +subset: human_subset +subset: mouse_subset synonym: "anterolateral groove of medulla oblongata" RELATED [BTO:0002777] synonym: "anterolateral sulcus of medulla" EXACT [FMA:83797] synonym: "sulcus anterolateralis" EXACT OMO:0003011 [FMA:83797, FMA:TA] @@ -292329,6 +302870,8 @@ id: UBERON:0008337 name: inguinal part of abdomen def: "The external junctural region between the lower part of the abdomen and the thigh." [MESH:A01.047.365] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "groin" EXACT [FMA:24040] synonym: "groin area" EXACT [] synonym: "groin region" EXACT [] @@ -292357,6 +302900,8 @@ relationship: part_of UBERON:0002417 ! abdominal segment of trunk id: UBERON:0008338 name: plantar part of pes def: "The sole is the bottom of the foot." [Wikipedia:Sole_(foot)] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "pelma" RELATED [Wikipedia:Sole_(foot)] synonym: "planta" EXACT OMO:0003011 [FMA:TA] @@ -292388,6 +302933,8 @@ property_value: taxon_notes "In humans is the sole of the foot anatomically refe [Term] id: UBERON:0008339 name: microvascular endothelium +subset: human_subset +subset: mouse_subset xref: BTO:0003122 is_a: UBERON:0004638 ! blood vessel endothelium is_a: UBERON:0004852 {source="BTO"} ! cardiovascular system endothelium @@ -292400,6 +302947,7 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2186" xsd id: UBERON:0008340 name: nasal bridge def: "A saddle-shaped area that includes the nasal root and the lateral aspects of the nose. It lies between the glabella and the inferior boundary of the nasal bone, and extends laterally to the inner canth[WP]." [DOI:10.1002/ajmg.a.32600, Wikipedia:Nasal_bridge] +subset: mouse_subset subset: pheno_slim xref: MA:0002874 xref: Wikipedia:Nasal_bridge @@ -292413,6 +302961,8 @@ relationship: part_of UBERON:0006333 {source="MA"} ! snout id: UBERON:0008341 name: columella nasi def: "The tissue that links the nasal tip to the nasal base, and separates the nares. It is the inferior margin of the nasal septum[EoM]." [DOI:10.1002/ajmg.a.32600] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "columella" RELATED [FMA:59725] synonym: "columella of nose" EXACT [] @@ -292428,6 +302978,8 @@ relationship: part_of UBERON:0007827 {source="FMA"} ! external nose id: UBERON:0008342 name: intestinal villus of duodenum def: "An intestinal villus in the duodenum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:63300 is_a: UBERON:0001213 ! intestinal villus intersection_of: UBERON:0001213 ! intestinal villus @@ -292439,6 +302991,8 @@ relationship: part_of UBERON:0002114 ! duodenum id: UBERON:0008343 name: intestinal villus of jejunum def: "An intestinal villus in the jejunum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:63301 is_a: UBERON:0001213 ! intestinal villus intersection_of: UBERON:0001213 ! intestinal villus @@ -292450,6 +303004,8 @@ relationship: part_of UBERON:0002115 ! jejunum id: UBERON:0008344 name: intestinal villus of ileum def: "An intestinal villus in the ileum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:63302 is_a: UBERON:0001213 ! intestinal villus intersection_of: UBERON:0001213 ! intestinal villus @@ -292462,6 +303018,8 @@ id: UBERON:0008345 name: ileal epithelium def: "An epithelium that is part of a ileum." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "epithelium of ileum" EXACT [FMA:17233] xref: EMAPA:35423 xref: FMA:17233 @@ -292479,6 +303037,8 @@ id: UBERON:0008346 name: duodenal epithelium def: "An epithelium that is part of a duodenum." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "epithelium of duodenum" EXACT [FMA:17231] xref: CALOHA:TS-2087 xref: EMAPA:19078 @@ -292496,6 +303056,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0008367 name: breast epithelium def: "An epithelium that is part of a breast." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: BTO:0001428 is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium @@ -292506,6 +303068,8 @@ relationship: part_of UBERON:0000310 ! breast id: UBERON:0008397 name: tracheobronchial epithelium def: "Epithelium pertaining to the trachea and bronchi." [Dorlands_Medical_Dictionary:MerckMedicus] +subset: human_subset +subset: mouse_subset synonym: "bronchotracheal epithelium" RELATED [BTO:0002925] xref: BTO:0002925 xref: CALOHA:TS-1063 @@ -292518,6 +303082,8 @@ relationship: part_of UBERON:0007196 ! tracheobronchial tree id: UBERON:0008404 name: proximal tubular epithelium def: "The cells lining the proximal tubule are cuboidal epithelial cells with deep basal membrane invaginations that provide a large basal surface area. The long microvilli (the brush border) lining the tubule lumen, maximize luminal surface area and make these cells ideally suited for both reabsorptive and secretory functions." [_Chapter_3, Renal_Physiology:Section_7] +subset: human_subset +subset: mouse_subset synonym: "epithelium of proximal convoluted tubule" EXACT [FMA:64808] synonym: "epithelium of proximal renal tubule" EXACT [FMA:64808] synonym: "proximal renal tubule epithelium" EXACT [FMA:64808] @@ -292537,6 +303103,8 @@ property_value: editor_note "See https://github.com/obophenotype/uberon/issues/1 id: UBERON:0008408 name: distal tubular epithelium def: "An epithelium that is part of a distal tubule." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal tubule epithelium" RELATED [BTO:0003948] xref: BTO:0003948 is_a: UBERON:0004810 ! nephron tubule epithelium @@ -292551,6 +303119,8 @@ property_value: editor_note "See https://github.com/obophenotype/uberon/issues/1 id: UBERON:0008420 name: buccal epithelium def: "An epithelium that is part of a buccal mucosa." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: BTO:0004803 is_a: UBERON:0002424 ! oral epithelium intersection_of: UBERON:0000483 ! epithelium @@ -292561,6 +303131,8 @@ relationship: part_of UBERON:0006956 {source="BTO"} ! buccal mucosa id: UBERON:0008424 name: inguinal mammary gland def: "A mammary gland that is part of a inguinal part of abdomen." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: MA:0000790 xref: SCTID:66519003 is_a: UBERON:0001911 ! mammary gland @@ -292573,6 +303145,8 @@ relationship: part_of UBERON:0008337 ! inguinal part of abdomen id: UBERON:0008425 name: mammary ridge def: "A ridge of epidermal cells that will form the mammary placodes." [GOC:dph] +subset: human_subset +subset: mouse_subset synonym: "mammary fold" EXACT [http://dictionary.reference.com/browse/mammary+ridge] synonym: "mammary gland ridge" EXACT [EMAPA:18541] synonym: "mammary line" RELATED [Wikipedia:Milk_line] @@ -292594,6 +303168,8 @@ property_value: taxon_notes "These buds are either located in the thoracic regio id: UBERON:0008426 name: transverse foramen of atlas def: "A transverse foramen that is part of a vertebral bone 1." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foramen transversarium of atlas" EXACT [FMA:23998] xref: FMA:23998 xref: SCTID:281220001 @@ -292607,6 +303183,8 @@ relationship: part_of UBERON:0001092 ! vertebral bone 1 id: UBERON:0008427 name: transverse foramen of axis def: "A transverse foramen that is part of a vertebral bone 2." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foramen transversarium of axis" EXACT [FMA:23999] xref: FMA:23999 xref: SCTID:281221002 @@ -292621,6 +303199,8 @@ relationship: part_of UBERON:0001093 ! vertebral bone 2 id: UBERON:0008428 name: ceratoglossus def: "Main, posterior part of hyoglossus muscle (vs. chondroglossus) arising from the greater horn of the hyoid bone." [http://www.medilexicon.com/medicaldictionary.php?t=56655] +subset: human_subset +subset: mouse_subset synonym: "ceratoglossus muscle" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=56655] synonym: "musculus ceratoglossus" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=56655] xref: FMA:46720 @@ -292631,6 +303211,8 @@ relationship: part_of UBERON:0001572 {source="FMA"} ! hyoglossus muscle id: UBERON:0008429 name: cervical vertebral foramen def: "A vertebral foramen that is part of a cervical vertebra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:13480 xref: SCTID:280833008 is_a: UBERON:0001131 ! vertebral foramen @@ -292643,6 +303225,8 @@ relationship: part_of UBERON:0002413 ! cervical vertebra id: UBERON:0008430 name: lumbar vertebral foramen def: "A vertebral foramen that is part of a lumbar vertebra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:24826 xref: SCTID:280835001 is_a: UBERON:0001131 ! vertebral foramen @@ -292655,6 +303239,8 @@ relationship: part_of UBERON:0002414 ! lumbar vertebra id: UBERON:0008431 name: sacral foramen def: "A vertebral foramen that is part of a sacral vertebra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:31749 is_a: UBERON:0001131 ! vertebral foramen is_a: UBERON:0005744 ! bone foramen @@ -292666,6 +303252,8 @@ relationship: part_of UBERON:0001094 ! sacral vertebra id: UBERON:0008432 name: thoracic vertebral foramen def: "A vertebral foramen that is part of a thoracic vertebra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:9143 xref: SCTID:280834002 is_a: UBERON:0001131 ! vertebral foramen @@ -292678,6 +303266,8 @@ relationship: part_of UBERON:0002347 ! thoracic vertebra id: UBERON:0008433 name: lumbar vertebral arch def: "A neural arch that is part of a lumbar vertebra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arch of lumbar vertebra" EXACT [FMA:16076] xref: FMA:16076 xref: SCTID:312766000 @@ -292692,6 +303282,8 @@ relationship: part_of UBERON:0002414 ! lumbar vertebra id: UBERON:0008434 name: cervical vertebral arch def: "A neural arch that is part of a cervical vertebra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arch of cervical vertebra" EXACT [FMA:23893] xref: FMA:23893 xref: SCTID:165269004 @@ -292706,6 +303298,8 @@ relationship: part_of UBERON:0002413 ! cervical vertebra id: UBERON:0008435 name: vertebral arch of sacral segment def: "A neural arch that is part of a sacral vertebra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:32401 is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0003861 ! neural arch @@ -292719,6 +303313,8 @@ relationship: part_of UBERON:0001094 ! sacral vertebra id: UBERON:0008436 name: thoracic vertebral arch def: "A neural arch that is part of a thoracic vertebra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arch of thoracic vertebra" EXACT [FMA:9151] xref: FMA:9151 xref: SCTID:312764002 @@ -292733,6 +303329,8 @@ relationship: part_of UBERON:0002347 ! thoracic vertebra id: UBERON:0008437 name: posterior arch of atlas def: "In a cervical vertebra, the posterior arch forms about two-fifths of the circumference of the ring: it ends behind in the posterior tubercle, which is the rudiment of a spinous process and gives origin to the Recti capitis posteriores minores." [Wikipedia:Posterior_arch_of_atlas] +subset: human_subset +subset: mouse_subset synonym: "arcus posterior" RELATED [] synonym: "arcus posterior atlantis" EXACT OMO:0003011 [FMA:23977, FMA:TA] synonym: "posterior arch" RELATED [Wikipedia:Posterior_arch] @@ -292748,6 +303346,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6b/Ar id: UBERON:0008438 name: webbed interdigital region between manual digits def: "A webbed interdigital region that is part of a manus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006013 ! interdigital region between manual digits is_a: UBERON:0006015 ! webbed interdigital region intersection_of: UBERON:0006015 ! webbed interdigital region @@ -292759,6 +303359,8 @@ relationship: part_of UBERON:0008441 ! webbed manus id: UBERON:0008439 name: webbed interdigital region between pedal digits def: "A webbed interdigital region that is part of a pes." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "toe web" EXACT [OBOL:automatic] is_a: UBERON:0006014 ! interdigital region between pedal digits is_a: UBERON:0006015 ! webbed interdigital region @@ -292771,6 +303373,8 @@ relationship: part_of UBERON:0008442 ! webbed pes id: UBERON:0008440 name: webbed autopod def: "An autopod region that has_part a webbed interdigital region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002470 ! autopod region intersection_of: UBERON:0002470 ! autopod region intersection_of: has_part UBERON:0006015 ! webbed interdigital region @@ -292780,6 +303384,8 @@ relationship: has_part UBERON:0006015 ! webbed interdigital region id: UBERON:0008441 name: webbed manus def: "A manus that has_part a webbed interdigital region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hand webbing" RELATED [AAO:0010120] synonym: "webbed hand" RELATED [] xref: AAO:0010120 @@ -292793,6 +303399,8 @@ relationship: has_part UBERON:0006015 ! webbed interdigital region id: UBERON:0008442 name: webbed pes def: "A pes that has_part a webbed interdigital region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot webbing" RELATED [AAO:0010121] synonym: "webbed foot" EXACT [] xref: AAO:0010121 @@ -292806,6 +303414,8 @@ relationship: has_part UBERON:0006015 ! webbed interdigital region id: UBERON:0008443 name: webbed digit def: "A digit that is part of a webbed autopod." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002544 ! digit intersection_of: UBERON:0002544 ! digit intersection_of: part_of UBERON:0008440 ! webbed autopod @@ -292815,6 +303425,8 @@ relationship: part_of UBERON:0008440 ! webbed autopod id: UBERON:0008444 name: webbed manual digit def: "A digit that is part of a webbed manus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "digit of webbed hand" EXACT [OBOL:automatic] synonym: "digit of webbed manus" EXACT [OBOL:automatic] synonym: "webbed finger" EXACT [OBOL:automatic] @@ -292828,6 +303440,8 @@ relationship: part_of UBERON:0008441 ! webbed manus id: UBERON:0008445 name: webbed pedal digit def: "A digit that is part of a webbed pes." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "digit of webbed foot" EXACT [OBOL:automatic] synonym: "digit of webbed pes" EXACT [OBOL:automatic] synonym: "webbed toe" EXACT [OBOL:automatic] @@ -292842,6 +303456,7 @@ id: UBERON:0008446 name: flexor pollicis longus muscle def: "A muscle in the forearm and hand that flexes the thumb. It lies in the same plane as the flexor digitorum profundus." [Wikipedia:Flexor_pollicis_longus_muscle] subset: human_reference_atlas +subset: human_subset synonym: "flexor pollicis" RELATED [Wikipedia:Flexor_pollicis_longus_muscle] synonym: "flexor pollicis longus" RELATED [Wikipedia:Flexor_pollicis_longus_muscle] synonym: "flexor pollicis muscle" RELATED [Wikipedia:Flexor_pollicis_longus_muscle] @@ -292863,6 +303478,8 @@ property_value: taxon_notes "Modern humans are unique among hominids in having a id: UBERON:0008447 name: intertarsal joint def: "Intertarsal articulations are the joints of the tarsus. The specific intertarsal articulations are: Talocalcaneal articulation Talocalcaneonavicular articulation Calcaneocuboid articulation Cuneonavicular articulation Cuboideonavicular articulation Intercuneiform articulation Cuneocuboid articulation." [Wikipedia:Intertarsal_articulations] +subset: human_subset +subset: mouse_subset synonym: "articulationes intertarsale" RELATED [MESH:A02.835.583.378.831] synonym: "articulationes intertarsales" RELATED OMO:0003011 [Wikipedia:Intertarsal_articulations] synonym: "articulationes intertarseae" RELATED [MESH:A02.835.583.378.831] @@ -292894,6 +303511,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gr id: UBERON:0008449 name: trochlear notch def: "The semilunar notch of the ulna (trochlear notch of ulna, greater sigmoid cavity) is a large depression, formed by the olecranon and the coronoid process, and serving for articulation with the trochlea of the humerus. About the middle of either side of this notch is an indentation, which contracts it somewhat, and indicates the junction of the olecranon and the coronoid process. The notch is concave from above downward, and divided into a medial and a lateral portion by a smooth ridge running from the summit of the olecranon to the tip of the coronoid process. The medial portion is the larger, and is slightly concave transversely; the lateral is convex above, slightly concave below." [Wikipedia:Trochlear_notch] +subset: human_subset +subset: mouse_subset synonym: "incisura semilunaris ulnae" RELATED OMO:0003011 [Wikipedia:Trochlear_notch] synonym: "incisura trochlearis" RELATED [Wikipedia:Trochlear_notch] synonym: "incisura trochlearis ulnae" RELATED OMO:0003011 [Wikipedia:Trochlear_notch] @@ -292911,6 +303530,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/60/Gr id: UBERON:0008450 name: psoas muscle def: "A powerful flexor of the thigh at the hip joint (psoas major) and a weak flexor of the trunk and lumbar spinal column (psoas minor). Psoas is derived from the Greek 'psoa', the plural meaning 'muscles of the loin'. It is a common site of infection manifesting as abscess (PSOAS ABSCESS). The psoas muscles and their fibers are also used frequently in experiments in muscle physiology." [MESH:A02.633.567.825, Wikipedia:Psoas] +subset: human_subset +subset: mouse_subset synonym: "psoas" EXACT [BTO:0001140, MA:0002553] xref: BTO:0001140 xref: EMAPA:36157 @@ -292929,6 +303550,8 @@ relationship: innervated_by UBERON:0009624 {source="dbpedia-abduced"} ! lumbar n id: UBERON:0008453 name: rectus capitis anterior def: "A muscle situated immediately behind the upper part of the Longus capitis that arises from the anterior surface of the lateral mass of the atlas, and from the root of its transverse process that inserts into the inferior surface of the basilar part of the occipital bone immediately in front of the foramen magnum." [Wikipedia:Rectus_capitis_anterior_muscle] +subset: human_subset +subset: mouse_subset synonym: "anterior rectus capitis" EXACT [FMA:46312] synonym: "anterior rectus capitis muscle" RELATED [Wikipedia:Rectus_capitis_anterior_muscle] synonym: "anterior vertebral muscle" RELATED [Wikipedia:Rectus_capitis_anterior_muscle] @@ -292956,6 +303579,8 @@ id: UBERON:0008454 name: rectus capitis posterior major def: "A muscle that arises by a pointed tendon from the spinous process of the axis and inserts into the lateral part of the inferior nuchal line of the occipital bone and the surface of the bone immediately below the line." [Wikipedia:Rectus_capitis_posterior_major_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "greater posterior rectus capitis" EXACT [FMA:32525] synonym: "musculus rectus capitis posterior major" RELATED OMO:0003011 [Wikipedia:Rectus_capitis_posterior_major_muscle] synonym: "recti capitis posteriores major" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle] @@ -292981,6 +303606,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/dd/Re id: UBERON:0008455 name: rectus capitis posterior minor def: "A muscle that arise from the tubercle on the posterior arch of the and is inserted into the medial part of the inferior nuchal line of the occipital bone and the surface between it and the foramen magnum, and also takes some attachment to the spinal dura." [Wikipedia:Rectus_capitis_posterior_minor_muscle] +subset: human_subset +subset: mouse_subset synonym: "lesser posterior rectus capitis" EXACT [FMA:32526] synonym: "musculus rectus capitis posterior minor" RELATED OMO:0003011 [Wikipedia:Rectus_capitis_posterior_minor_muscle] synonym: "recti capitis posteriores minores" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle] @@ -293005,6 +303632,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ed/Re id: UBERON:0008456 name: prezygapophysis of lumbar vertebra def: "A prezygapophysis that is part of a lumbar vertebra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cranial articular process of lumbar vertebra" EXACT [FMA:16126] synonym: "superior articular process of lumbar vertebra" EXACT HUMAN_PREFERRED [FMA:16126] xref: FMA:16126 @@ -293018,6 +303647,8 @@ relationship: part_of UBERON:0002414 ! lumbar vertebra id: UBERON:0008457 name: prezygapophysis of sacral vertebra def: "A prezygapophysis that is part of a sacral vertebra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "articular process of sacral segment" EXACT [FMA:16215] synonym: "processus articularis superior (os sacrum)" EXACT [FMA:16215] synonym: "processus articularis superior ossis sacri" EXACT OMO:0003011 [FMA:TA] @@ -293034,6 +303665,8 @@ relationship: part_of UBERON:0001094 ! sacral vertebra id: UBERON:0008459 name: prezygapophysis of cervical vertebra def: "A prezygapophysis that is part of a cervical vertebra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "superior articular process of cervical segment" EXACT [] synonym: "superior articular process of cervical vertebra" EXACT HUMAN_PREFERRED [FMA:23969] xref: FMA:23969 @@ -293047,6 +303680,8 @@ relationship: part_of UBERON:0002413 ! cervical vertebra id: UBERON:0008460 name: prezygapophysis of thoracic vertebra def: "A prezygapophysis that is part of a thoracic vertebra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cranial articular process of thoracic vertebra" EXACT [FMA:9155] synonym: "processus articularis (zygapophysis) thoracicus superior" EXACT [FMA:9155] synonym: "superior apophyseal process" EXACT [FMA:9155] @@ -293063,6 +303698,8 @@ relationship: part_of UBERON:0002347 ! thoracic vertebra id: UBERON:0008461 name: postzygapophysis of lumbar vertebra def: "An postzygapophysis that is part of a lumbar vertebra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "caudal articular process of lumbar vertebra" EXACT [FMA:16127] synonym: "inferior articular process of lumbar vertebra" EXACT HUMAN_PREFERRED [FMA:16127] xref: FMA:16127 @@ -293076,6 +303713,8 @@ relationship: part_of UBERON:0002414 ! lumbar vertebra id: UBERON:0008462 name: postzygapophysis of cervical vertebra def: "An postzygapophysis that is part of a cervical vertebra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "inferior articular process of cervical vertebra" EXACT HUMAN_PREFERRED [FMA:23970] xref: FMA:23970 xref: SCTID:61633005 @@ -293088,6 +303727,8 @@ relationship: part_of UBERON:0002413 ! cervical vertebra id: UBERON:0008463 name: postzygapophysis of thoracic vertebra def: "An postzygapophysis that is part of a thoracic vertebra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "caudal articular process of thoracic vertebra" EXACT [FMA:9156] synonym: "inferior apophyseal process" EXACT [FMA:9156] synonym: "inferior articular process of thoracic vertebra" EXACT HUMAN_PREFERRED [FMA:9156] @@ -293105,6 +303746,8 @@ id: UBERON:0008464 name: abductor hallucis muscle def: "The Abductor hallucis lies along the medial border of the pes and covers the origins of the plantar vessels and nerves. It arises from the medial process of the tuberosity of the calcaneus, from the laciniate ligament, from the plantar aponeurosis, and from the intermuscular septum between it and the Flexor digitorum brevis. The fibers end in a tendon, which is inserted, together with the medial tendon of the Flexor hallucis brevis, into the tibial side of the base of the first phalanx of the great toe." [Wikipedia:Abductor_hallucis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "abductor hallucis" RELATED [Wikipedia:Abductor_hallucis_muscle] synonym: "musculus abductor hallucis" RELATED OMO:0003011 [Wikipedia:Abductor_hallucis_muscle] xref: FMA:37448 @@ -293121,6 +303764,8 @@ id: UBERON:0008465 name: abductor pollicis brevis muscle def: "The abductor pollicis brevis is a muscle in the manus that functions as an abductor of the thumb." [Wikipedia:Abductor_pollicis_brevis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "abductor brevis" RELATED [Wikipedia:Abductor_pollicis_brevis_muscle] synonym: "abductor pollicis brevis" RELATED [Wikipedia:Abductor_pollicis_brevis_muscle] synonym: "musculus abductor pollicis brevis" RELATED OMO:0003011 [Wikipedia:Abductor_pollicis_brevis_muscle] @@ -293142,6 +303787,8 @@ id: UBERON:0008488 name: cremaster muscle def: "A thin layer of skeletal muscle that envelops the spermatic cord and testis of most male mammals in a series of loops; it is a continuation of the obliquus internus, arising from the inguinal ligament and inserting into the crest of the pubis and into the sheath of the rectus abdominis; it is innervated by the genital branch of the genitofemoral nerve and functions to draw the testis up toward the superficial inguinal ring in response to cold or to stimulation of the nerve;." [MGI:anna, MP:0011833, Wikipedia:Cremaster_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cremaster" EXACT [FMA:21531] synonym: "cremaster muscle" RELATED [Wikipedia:Cremaster_muscle] @@ -293174,6 +303821,8 @@ id: UBERON:0008521 name: gluteus minimus def: "The smallest of the three gluteal muscles, situated immediately beneath the gluteus medius." [Wikipedia:Gluteus_minimus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "glutaeus minimus" RELATED [Wikipedia:Gluteus_minimus_muscle] synonym: "gluteus minimus" RELATED [Wikipedia:Gluteus_minimus_muscle] synonym: "gluteus minimus muscle" EXACT [] @@ -293196,6 +303845,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Po id: UBERON:0008522 name: nasal muscle def: "Any muscle organ that is part of an nose." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscle of nose" EXACT [OBOL:automatic] xref: FMA:73758 xref: NCIT:C33158 @@ -293212,6 +303863,8 @@ id: UBERON:0008523 name: infrahyoid muscle def: "The infrahyoid muscles are a group of four pairs of muscles in the anterior part of the neck. (The term infrahyoid refers to the region below to the hyoid bone in the neck. ) Collectively, they are referred to as the strap muscles, because the muscles are long and flat much like a strap." [Wikipedia:Infrahyoid_muscles] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "infrahyoid" RELATED [Wikipedia:Infrahyoid_muscles] synonym: "infrahyoid muscle" RELATED [Wikipedia:Infrahyoid_muscles] synonym: "infrahyoidala" RELATED [Wikipedia:Infrahyoid_muscles] @@ -293235,6 +303888,8 @@ id: UBERON:0008529 name: piriformis muscle def: "The piriformis is a muscle in the gluteal region that originates from the anterior (front) part of the sacrum, the part of the spine in the gluteal region, and from the superior margin of the greater sciatic notch (as well as the sacroiliac joint capsule and the sacrotuberous ligament). It exits the pelvis through the greater sciatic foramen to insert on the greater trochanter of the femur. Its tendon often joins with the tendons of the superior gemellus, inferior gemellus, and obturator internus muscles prior to insertion[WP,modified]." [Wikipedia:Piriformis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "m.piriformis" EXACT [FMA:19082] synonym: "musculus piriformis" RELATED OMO:0003011 [Wikipedia:Piriformis_muscle] synonym: "piriform muscle" RELATED [Wikipedia:Piriformis_muscle] @@ -293255,6 +303910,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Po id: UBERON:0008537 name: quadratus femoris def: "The quadratus femoris is, as its name implies, a flat, quadrilateral skeletal muscle. Located on the posterior side of the hip joint, it is a strong lateral rotator and adductor of the thigh, but also acts to stabilize the femoral head in the Acetabulum." [Wikipedia:Quadratus_femoris_muscle] +subset: human_subset +subset: mouse_subset synonym: "musculus quadratus femoris" RELATED OMO:0003011 [Wikipedia:Quadratus_femoris_muscle] synonym: "quadratus femoris muscle" RELATED [Wikipedia:Quadratus_femoris_muscle] xref: EMAPA:36241 @@ -293269,6 +303926,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/55/Po id: UBERON:0008544 name: splenius cervicis def: "A muscle that arises from the spinous processes of the third to the sixth thoracic vertebrae and inserts into the posterior tubercles of the transverse processes of the upper two or three cervical vertebrae[WP,modified]." [Wikipedia:Splenius_cervicis_muscle] +subset: human_subset +subset: mouse_subset synonym: "musculus splenius cervicis" RELATED OMO:0003011 [Wikipedia:Splenius_cervicis_muscle] synonym: "splenius cervicis muscle" RELATED [Wikipedia:Splenius_cervicis_muscle] xref: FMA:22681 @@ -293283,6 +303942,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/26/Mu id: UBERON:0008546 name: iliocostalis cervicis muscle def: "The iliocostalis cervicis (cervicalis ascendens) arises from the angles of the third, fourth, fifth, and sixth ribs, and is inserted into the posterior tubercles of the transverse processes of the fourth, fifth, and sixth cervical vertebrae.." [Wikipedia:Iliocostalis#Iliocostalis_cervicis] +subset: human_subset +subset: mouse_subset synonym: "cervicalis ascendens" RELATED [Wikipedia:Iliocostalis] synonym: "cervicalis ascendens muscle" RELATED [Wikipedia:Iliocostalis] synonym: "iliocostalis cervicis" RELATED [Wikipedia:Iliocostalis] @@ -293297,6 +303958,8 @@ id: UBERON:0008549 name: prevertebral muscle def: "One of the muscles deep to the prevertebral fascia on the anterior surface of the cervical and superior three thoracic vertebrae, symmetrically placed on each side of the median plane, including the longus colli, longus capitis, rectus capitis anterior, and rectus capitis lateralis muscles. innervated by anterior rami of cervical spinal nerves." [http://www.drugs.com/dict/prevertebral-muscles.html] comment: some authorities define the group as medial to the plane of the cervicobrachial plexus, and thus also include the anterior scalene muscle. Action notes: flexors of the head and neck +subset: human_subset +subset: mouse_subset synonym: "flexor muscle of vertebral column" EXACT [FMA:32514] synonym: "prevertebral muscle" EXACT [FMA:32514] xref: FMA:32514 @@ -293311,6 +303974,8 @@ id: UBERON:0008571 name: suprahyoid muscle def: "A muscle in the region above the hyoid bone in the neck. The suprahyoid muscles include digastric, stylohyoid, geniohyoid, and mylohyoid." [Wikipedia:Suprahyoid_muscles] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "musculi suprahyoidei" RELATED OMO:0003011 [Wikipedia:Suprahyoid_muscles] synonym: "suprahyoid" RELATED [Wikipedia:Suprahyoid_muscles] synonym: "suprahyoidala" RELATED [Wikipedia:Suprahyoid_muscles] @@ -293330,6 +303995,8 @@ id: UBERON:0008572 name: posterior crico-arytenoid def: "The posterior cricoarytenoid muscles are extremely small, paired muscles that extend from the posterior cricoid cartilage to the arytenoid cartilages in the larynx. By rotating the arytenoid cartilages laterally, these muscles abduct the vocal cords and thereby open the rima glottidis. Their action opposes the lateral cricoarytenoid muscles. The posterior cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X). Paralysis of the posterior cricoarytenoid muscles may lead to asphyxiation as they are the only laryngeal muscles to open the true vocal folds, allowing inspiration and expiration." [Wikipedia:Posterior_cricoarytenoid_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cricoarytaenoideus posterior" RELATED [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "cricoarytænoideus posterior" RELATED [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "musculus cricoarytenoideus posterior" RELATED OMO:0003011 [Wikipedia:Posterior_cricoarytenoid_muscle] @@ -293352,6 +304019,8 @@ id: UBERON:0008573 name: lateral crico-arytenoid def: "The lateral cricoarytenoid (also anterior cricoarytenoid) muscles extend from the lateral cricoid cartilage to the ipsilateral arytenoid cartilage. By rotating the arytenoid cartilages medially, these muscles adduct the vocal cords and thereby close the rima glottidis, protecting the airway. (Their action is antagonistic to that of the posterior cricoarytenoid muscles. ) The lateral cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X)." [Wikipedia:Lateral_cricoarytenoid_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cricoarytaenoideus lateralis" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "cricoarytaenoideus lateralis muscle" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "cricoarytænoideus lateralis" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] @@ -293375,6 +304044,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/34/Mu id: UBERON:0008574 name: transverse arytenoid def: "The tranverse arytenoid crosses transversely between the two cartilages. It is an unpaired muscle running from one arytenoid to another to pull the arytenoids together." [Wikipedia:Arytenoid_muscle] +subset: human_subset +subset: mouse_subset synonym: "arytenoid transversus" RELATED [] synonym: "tranverse arytenoid muscle" RELATED [Wikipedia:Transverse_arytenoid] xref: FMA:46582 @@ -293385,6 +304056,8 @@ is_a: UBERON:0010958 ! arytenoid muscle id: UBERON:0008575 name: oblique arytenoid def: "The oblique arytenoid, the more superficial Arytenoid muscle, forms two fasciculi, which pass from the base of one cartilage to the apex of the opposite one, and therefore cross each other like the limbs of the letter X; a few fibers are continued around the lateral margin of the cartilage, and are prolonged into the aryepiglottic fold; they are sometimes described as a separate muscle, the Aryepiglotticus. The aryepiglottic muscle together with the transverse arytenoid and the thyroarytenoid work as a sphincter and close the larynx as we swallow or cough. Its innervation is by the recurrent laryngeal nerve (from vagus) just like all the intrinsic muscles of the larynx except the cricothyroid muscle." [Wikipedia:Oblique_arytenoid_muscle] +subset: human_subset +subset: mouse_subset synonym: "arytenoid obliquus" RELATED [] synonym: "oblique arytenoid muscle" RELATED [Wikipedia:Oblique_arytenoid] xref: FMA:46583 @@ -293396,6 +304069,8 @@ is_a: UBERON:0010958 ! arytenoid muscle id: UBERON:0008576 name: thyro-arytenoid def: "The Thyroarytenoid is a broad, thin, muscle which lies parallel with and lateral to the vocal fold, and supports the wall of the ventricle and its appendix. It functions in fine tonal control of the vocal cords." [Wikipedia:Thyroarytenoid_muscle] +subset: human_subset +subset: mouse_subset synonym: "musculus thyroarytenoideus" RELATED OMO:0003011 [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoarytaenoideus" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoarytaenoideus muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] @@ -293426,6 +304101,8 @@ id: UBERON:0008577 name: vocalis muscle def: "The vocal muscle is the upper portion of the thyroarytenoid muscle which is primarily involved in producing speech." [Wikipedia:Vocal_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "musculus vocalis" RELATED OMO:0003011 [Wikipedia:Vocal_muscle] synonym: "vocal muscle" EXACT [FMA:46591] synonym: "vocalis" EXACT [] @@ -293447,6 +304124,8 @@ property_value: external_ontology_notes "in FMA this is not placed under thyro-a id: UBERON:0008582 name: superior longitudinal muscle of tongue def: "A muscle of the tongue that consists of a thin stratum of oblique and longitudinal fibers immediately underlying the mucous membrane on the dorsum of the tongue." [Wikipedia:Superior_longitudinal_muscle_of_tongue] +subset: human_subset +subset: mouse_subset synonym: "longitudinalis linguae superior" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue] synonym: "longitudinalis linguæ superior" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue] synonym: "musculus longitudinalis superior" EXACT [FMA:46693] @@ -293467,6 +304146,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Mu id: UBERON:0008583 name: transverse muscle of tongue def: "A muscle of the tongue that consists of fibers which arise from the median fibrous septum and pass lateralward to be inserted into the submucous fibrous tissue at the sides of the tongue." [Wikipedia:Transverse_muscle_of_tongue] +subset: human_subset +subset: mouse_subset synonym: "intrinsic tongue muscle transverse component" EXACT [MA:0002328] synonym: "musculus transversus linguae" RELATED OMO:0003011 [Wikipedia:Transverse_muscle_of_tongue] synonym: "transverse lingual muscle" EXACT [FMA:46695] @@ -293491,6 +304172,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/14/Mu id: UBERON:0008584 name: vertical muscle of tongue def: "A muscle of the tongue that is found only at the borders of the forepart of the tongue. Its fibers extend from the upper to the under surface of the organ." [Wikipedia:Vertical_muscle_of_tongue] +subset: human_subset +subset: mouse_subset synonym: "intrinsic tongue muscle vertical component" EXACT [MA:0002329] synonym: "musculus verticalis linguae" RELATED OMO:0003011 [Wikipedia:Vertical_muscle_of_tongue] synonym: "vertical lingual muscle" EXACT [FMA:46696] @@ -293517,6 +304200,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d8/Gr id: UBERON:0008585 name: levator veli palatini def: "The levator veli palatini is the elevator muscle of the velum palatinum in the human body. During swallowing, it contracts, elevating the soft palate to help prevent food from entering the nasopharynx. It is innervated via the pharyngeal plexus, primarily by the vagus nerve (CN X). The levator veli palatini (Levator palati) is a thick, rounded muscle situated lateral to the choanC&. It arises from the under surface of the apex of the petrous part of the temporal bone and from the medial lamina of the cartilage of the auditory tube. After passing above the upper concave margin of the Constrictor pharyngis superior it spreads out in the palatine velum, its fibers extending obliquely downward and medially to the middle line, where they blend with those of the opposite side." [Wikipedia:Levator_veli_palatini] +subset: human_subset +subset: mouse_subset synonym: "levator palati" RELATED [Wikipedia:Levator_veli_palatini] synonym: "levator veli" RELATED [Wikipedia:Levator_veli_palatini] synonym: "levator veli palatini muscle" RELATED [Wikipedia:Levator_veli_palatini] @@ -293538,6 +304223,8 @@ id: UBERON:0008586 name: tensor veli palatini def: "The tensor veli palatini (tensor palati) is a broad, thin, ribbon-like muscle in the head that tenses the soft palate." [Wikipedia:Tensor_veli_palatini_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "musculus tensor veli palatini" RELATED OMO:0003011 [Wikipedia:Tensor_veli_palatini_muscle] synonym: "tensor palati" RELATED [Wikipedia:Tensor_veli_palatini_muscle] synonym: "tensor palati muscle" RELATED [Wikipedia:Tensor_veli_palatini_muscle] @@ -293559,6 +304246,8 @@ property_value: external_definition "The tensor veli palatini is a muscle of the id: UBERON:0008588 name: procerus def: "The Procerus is a small pyramidal slip of muscle deep to the superior orbital nerve, artery and vein." [Wikipedia:Procerus_muscle] +subset: human_subset +subset: mouse_subset synonym: "depressor glabellae" RELATED OMO:0003011 [Wikipedia:Procerus_muscle] synonym: "musculus procerus glabellae" RELATED OMO:0003011 [Wikipedia:Procerus_muscle] synonym: "procerus muscle" RELATED [Wikipedia:Procerus_muscle] @@ -293574,6 +304263,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/76/Pr id: UBERON:0008589 name: depressor septi nasi def: "The depressor septi (Depressor alE nasi) arises from the incisive fossa of the maxilla. Its fibers ascend to be inserted into the nasal septum and back part of the alar part of nasalis muscle. It lies between the mucous membrane and muscular structure of the lip." [Wikipedia:Depressor_septi_nasi_muscle] +subset: human_subset +subset: mouse_subset synonym: "depressor alae nasi" RELATED [Wikipedia:Depressor_septi_nasi_muscle] synonym: "depressor alæ nasi" RELATED [Wikipedia:Depressor_septi_nasi_muscle] synonym: "depressor septi" EXACT [Wikipedia:Depressor_septi_nasi_muscle] @@ -293591,6 +304282,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6c/Mu id: UBERON:0008591 name: depressor supercilii def: "The Depressor Supercilii is an eye muscle of the human body. The nature of this muscle is in some dispute. Few printed anatomies include it (Netter, et al. ) and many authorities consider it to be part of the orbicularis oculi muscle . On the other hand, many dermatologists, ophthalmologists and plastic surgeons hold that the depressor supercilli is a distinct muscle and has a definite, individual effect on the movement of the eybrow and skin of the glabella." [Wikipedia:Depressor_supercilii_muscle] +subset: human_subset +subset: mouse_subset synonym: "depressor supercilii muscle" RELATED [Wikipedia:Depressor_supercilii_muscle] synonym: "musculus depressor supercilii" RELATED OMO:0003011 [Wikipedia:Depressor_supercilii_muscle] xref: FMA:46798 @@ -293605,6 +304298,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e2/Gr id: UBERON:0008592 name: levator labii superioris alaeque nasi def: "The levator labii superioris alaeque nasi muscle is, translated from Latin, the 'lifter of the upper lip and of the wing of the nose'. It has the longest name of any muscle in an animal." [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] +subset: human_subset +subset: mouse_subset synonym: "alaeque" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] synonym: "elvis muscle" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] synonym: "levator labii superioris alaequae nasi muscle" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] @@ -293625,6 +304320,8 @@ name: zygomaticus major muscle def: "Facial muscle attached to the modiolus, corner (angle) of the mouth, and zygomatic bone. See Diogo 2008; Diogo et al., 2009; Burrows et al.., 2011., also DuBrul, 1980." [MFMO:0000138] subset: feed_aligned subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "auriculolabialis superior" RELATED [MFMO:0000138] synonym: "musculus zygomaticus major" RELATED OMO:0003011 [Wikipedia:Zygomaticus_major_muscle] synonym: "zygomatic major" RELATED [Wikipedia:Zygomaticus_major_muscle] @@ -293663,6 +304360,8 @@ name: zygomaticus minor muscle def: "Facial muscle attached to the modiolus, corner (angle) of the mouth, and zygomatic bone. This muscle is ventral to the zygomaticus minor and dorsal to the platysma muscle. In many mammals this muscle also has an attachment to the cartilage of the external ear, in which case it is called the auriculolabialis inferior. See Diogo 2008; Diogo et al., 2009; Burrows et al.., 2011., also DuBrul, 1980." [MFMO:0000138] subset: feed_aligned subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "auriculolabialis superior" NARROW [] synonym: "auriculolabialis superior" RELATED [MFMO:0000137] synonym: "musculus quadratus labii superioris, zygomatic head" EXACT [MFMO:0000137] @@ -293697,6 +304396,8 @@ id: UBERON:0008595 name: levator anguli oris def: "The levator anguli oris (caninus) is a facial muscle of the mouth arising from the canine fossa, immediately below the infraorbital foramen. Its fibers are inserted into the angle of the mouth, intermingling with those of the Zygomaticus, Triangularis, and Orbicularis oris." [Wikipedia:Levator_anguli_oris_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "caninus" RELATED [Wikipedia:Levator_anguli_oris] synonym: "caninus muscle" RELATED [Wikipedia:Levator_anguli_oris] synonym: "levator anguli oris" RELATED [Wikipedia:Levator_anguli_oris] @@ -293716,6 +304417,8 @@ id: UBERON:0008596 name: mentalis muscle def: "A muscle of facial expression, innervated by the facial nerve, attached to the skin of the lower lip and inferior to the lower lip (in humans this region is called the chin or mental region), the orbicularis oris muscle, and the mandible in the symphyseal region. See Diogo et al., 2009; Burrows et al., 2011)." [MFMO:0000122] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "mentalis" EXACT [MFMO:0000122] synonym: "musculus mentalis" EXACT OMO:0003011 [Wikipedia:Mentalis] xref: FMA:46825 @@ -293746,6 +304449,8 @@ id: UBERON:0008597 name: depressor anguli oris muscle def: "The Depressor anguli oris (Triangularis) arises from the oblique line of the mandible, whence its fibers converge, to be inserted, by a narrow fasciculus, into the angle of the mouth." [Wikipedia:Depressor_anguli_oris_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "depressor anguli oris" RELATED [Wikipedia:Depressor_anguli_oris_muscle] synonym: "musculus depressor anguli oris" RELATED OMO:0003011 [Wikipedia:Depressor_anguli_oris_muscle] synonym: "triangularis" RELATED [Wikipedia:Depressor_anguli_oris_muscle] @@ -293767,6 +304472,7 @@ name: risorius muscle def: "Facial muscle that attaches to the fascia of the masseter muscle and the facia of the skin in the region of the corner (angle) of the mouth. Even in species in which this muscle is present, it is highly variable. A true risorius muscle may only be present in Hominins (humans and great apes). See Diogo 2008; Diogo et al., 2009; Burrows et al.., 2011., also DuBrul, 1980." [MFMO:0000141] subset: feed_aligned subset: human_reference_atlas +subset: human_subset synonym: "musculus risorius" EXACT OMO:0003011 [Wikipedia:Risorius] synonym: "risorius" EXACT [MFMO:0000141] xref: FMA:46838 @@ -293794,6 +304500,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/af/Mu id: UBERON:0008603 name: helicis major def: "The Helicis major is a narrow vertical band situated upon the anterior margin of the helix. It arises below, from the spina helicis, and is inserted into the anterior border of the helix, just where it is about to curve backward." [Wikipedia:Helicis_major] +subset: human_subset +subset: mouse_subset synonym: "helicis major muscle" RELATED [] synonym: "musculus helicis major" EXACT OMO:0003011 [Wikipedia:Helicis_major] xref: FMA:48968 @@ -293806,6 +304514,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gr id: UBERON:0008604 name: helicis minor def: "The Helicis minor is an oblique fasciculus, covering the crus helicis." [Wikipedia:Helicis_minor] +subset: human_subset +subset: mouse_subset synonym: "helicis minor muscle" RELATED [] synonym: "musculus helicis minor" RELATED OMO:0003011 [Wikipedia:Helicis_minor] xref: FMA:48971 @@ -293818,6 +304528,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gr id: UBERON:0008605 name: tragicus muscle def: "The Tragicus is a short, flattened vertical band on the lateral surface of the tragus." [Wikipedia:Tragicus] +subset: human_subset +subset: mouse_subset synonym: "musculus tragicus" RELATED OMO:0003011 [Wikipedia:Tragicus] synonym: "tragicus" EXACT [FMA:48974] synonym: "tragicus muscle" RELATED [] @@ -293831,6 +304543,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gr id: UBERON:0008606 name: antitragicus muscle def: "The Antitragicus arises from the outer part of the antitragus, and is inserted into the cauda helicis and antihelix." [Wikipedia:Antitragicus] +subset: human_subset +subset: mouse_subset synonym: "antitragicus" EXACT [FMA:48980] synonym: "antitragicus muscle" RELATED [] synonym: "musculus antitragicus" RELATED OMO:0003011 [Wikipedia:Antitragicus] @@ -293844,6 +304558,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/58/Mu id: UBERON:0008607 name: transverse muscle of auricle def: "The transverse muscle of auricle is placed on the cranial surface of the pinna. It consists of scattered fibers, partly tendinous and partly muscular, extending from the eminentia conchae to the prominence corresponding with the scapha." [Wikipedia:Transverse_muscle_of_auricle] +subset: human_subset +subset: mouse_subset synonym: "musculus transversus auriculae" RELATED OMO:0003011 [Wikipedia:Transverse_muscle_of_auricle] synonym: "transverse muscle of pinna" EXACT [FMA:48983] synonym: "transversus auriculae" EXACT [Wikipedia:Transverse_muscle_of_auricle] @@ -293858,6 +304574,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d2/Gr id: UBERON:0008608 name: oblique muscle of auricle def: "The oblique muscle of auricle, on the cranial surface, consists of a few fibers extending from the upper and back part of the concha to the convexity immediately above it." [Wikipedia:Oblique_muscle_of_auricle] +subset: human_subset +subset: mouse_subset synonym: "musculus obliquus auriculae" RELATED OMO:0003011 [Wikipedia:Oblique_muscle_of_auricle] synonym: "oblique muscle of pinna" EXACT [FMA:48986] synonym: "obliquus auriculae" EXACT [Wikipedia:Oblique_muscle_of_auricle] @@ -293874,6 +304592,8 @@ id: UBERON:0008609 name: transversus menti muscle def: "The transversus menti, or transverse muscle of the chin, is a facial muscle that is often considered to be the superficial fibers of the depressor anguli oris muscle which cross to the other side of the face." [Wikipedia:Transverse_muscle_of_the_chin] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "musculus transversus menti" RELATED OMO:0003011 [Wikipedia:Transverse_muscle_of_the_chin] synonym: "transverse menti" EXACT [FMA:49080] synonym: "transversus menti" RELATED [Wikipedia:Transverse_muscle_of_the_chin] @@ -293888,6 +304608,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/36/Gr id: UBERON:0008611 name: scalene muscle def: "Any of the three pairs of muscles in the lateral neck, namely the scalenus anterior, scalenus medius, and scalenus posterior. They are innervated by the spinal nerves C4-C8[WP]." [Wikipedia:Scalene_muscles] +subset: human_subset +subset: mouse_subset synonym: "lateral cervical muscle" RELATED [Wikipedia:Scalene_muscles] synonym: "lateral cervical muscles" RELATED [Wikipedia:Scalene_muscles] synonym: "lateral vertebral muscle" RELATED [Wikipedia:Scalene_muscles] @@ -293915,6 +304637,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6e/Sc id: UBERON:0008612 name: muscle of pelvic diaphragm def: "A muscular partition formed by the levatores ani and coccygei, with which may be included the parietal pelvic fascia on their upper and lower aspects. It separates the pelvic cavity above from the perineal region below." [http://www.dartmouth.edu/~humananatomy/part_6/chapter_37.html] +subset: human_subset +subset: mouse_subset synonym: "diaphragm of the pelvis" RELATED [Wikipedia:Pelvic_floor] synonym: "diaphragma pelvis" RELATED OMO:0003011 [Wikipedia:Pelvic_floor] synonym: "muscle of pelvic floor" EXACT [FMA:64856] @@ -293935,6 +304659,8 @@ id: UBERON:0008617 name: innermost intercostal muscle def: "The Innermost intercostal muscle is a layer of intercostal muscle beneath the intercostal nerves and internal intercostal muscles. These are divided into transversus thoracis anteriorly, lateral muscle slips laterally and subcostalis posteriorly." [Wikipedia:Innermost_intercostal_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "musculus intercostalis intimus" RELATED OMO:0003011 [Wikipedia:Innermost_intercostal_muscle] xref: FMA:9758 xref: SCTID:368054008 @@ -293950,6 +304676,8 @@ id: UBERON:0008618 name: subcostal muscle def: "The Subcostales (Infracostales) consist of muscular and aponeurotic fasciculi, which are usually well-developed only in the lower part of the thorax; each originates from the inner surface of one rib, and is inserted into the inner surface of the second or third rib above, near its angle. Their fibers run in the same direction as those of the Intercostales interni." [Wikipedia:Subcostalis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "musculus subcostalis" RELATED OMO:0003011 [Wikipedia:Subcostalis_muscle] synonym: "subcostal muscles" RELATED [Wikipedia:Subcostalis_muscle] synonym: "subcostales" RELATED [Wikipedia:Subcostalis_muscle] @@ -293969,6 +304697,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0008622 name: scalenus anterior def: "The Scalenus anterior (Scalenus anticus), also known as anterior scalene muscle, lies deeply at the side of the neck, behind the Sternocleidomastoideus. It arises from the anterior tubercles of the transverse processes of the third, fourth, fifth, and sixth cervical vertebrC&, and descending, almost vertically, is inserted by a narrow, flat tendon into the scalene tubercle on the inner border of the first rib, and into the ridge on the upper surface of the rib in front of the subclavian groove." [Wikipedia:Scalenus_anterior] +subset: human_subset +subset: mouse_subset synonym: "anterior scalene" EXACT [Wikipedia:Scalenus_anterior] synonym: "musculus scalenus anterior" RELATED OMO:0003011 [Wikipedia:Scalenus_anterior] synonym: "scalenus anterior muscle" RELATED [Wikipedia:Scalenus_anterior] @@ -293986,6 +304716,8 @@ id: UBERON:0008712 name: stylohyoid muscle def: "The stylohyoid is a pharyngeal arch II muscle that participates in oral/pharygeal behaviors and is innervated by the stylohoid branch of the facial nerve and attaches to the stylohyal and the non-stylohyal part of the hyoid apparatus." [MFMO:0000061] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "musculus stylohyoideus" RELATED OMO:0003011 [Wikipedia:Stylohyoid_muscle] synonym: "stylohyoid" RELATED [Wikipedia:Stylohyoid_muscle] synonym: "stylohyoideus" RELATED [Wikipedia:Stylohyoid_muscle] @@ -294006,6 +304738,8 @@ property_value: external_definition "The stylohyoid is a pharyngeal arch II musc [Term] id: UBERON:0008713 name: pectoral girdle and thoracic body wall skeletal muscle +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001421 xref: EMAPA:17748 xref: RETIRED_EHDAA2:0001422 @@ -294015,6 +304749,8 @@ is_a: UBERON:0001134 ! skeletal muscle tissue id: UBERON:0008715 name: muscle tissue of prostate def: "A muscle tissue that is part of a prostate gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "prostate gland muscle tissue" EXACT [OBOL:automatic] synonym: "prostate muscle tissue" EXACT [OBOL:automatic] synonym: "prostatic muscle" EXACT [] @@ -294033,6 +304769,8 @@ relationship: part_of UBERON:0002367 ! prostate gland id: UBERON:0008716 name: hilum of kidney def: "An opening on medial margin of the kidney leading into the renal sinus. he renal vessels enter/leave the kidney at the hilum; the renal pelvis leaves the kidney at the hilum." [http://anatomy.uams.edu/anatomyhtml/kidney.html] +subset: human_subset +subset: mouse_subset synonym: "hilar area of the kidney" EXACT [] synonym: "renal hilum" EXACT [FMA:15610] xref: FMA:15610 @@ -294054,6 +304792,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/k id: UBERON:0008772 name: proximal epiphysis of tibia def: "A proximal epiphysis that is part of a tibia." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "head of tibia" EXACT [FMA:33113] synonym: "proximal end of tibia" EXACT [FMA:33113] @@ -294074,6 +304814,8 @@ relationship: part_of UBERON:0000979 ! tibia id: UBERON:0008775 name: proximal epiphysis of fibula def: "A proximal epiphysis that is part of a fibula." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "caput fibulae" EXACT OMO:0003011 [Wikipedia:Head_of_fibula] synonym: "fibular head" RELATED [FMA:33729] @@ -294102,6 +304844,8 @@ alt_id: UBERON:0003225 alt_id: UBERON:0003226 def: "A thin monolayer of small cuboidal cells that make up the lower layer of the bilaminar embryonic disc, beneath the epiblast." [MP:0011183] subset: early_development +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hypoblast" RELATED SENSU [GO:0090008, ISBN:9780878932504, VHOG:0001222] synonym: "primary endoderm" RELATED [MP:0011185] @@ -294125,6 +304869,8 @@ property_value: taxon_notes "This layer can be distinguished from the overlying id: UBERON:0008777 name: hypaxial musculature def: "Musculature that is derived from the hypaxial myotome region, trunk muscles that lie ventral to the horizontal septum of the vertebrae. Hypaxial muscles include some vertebral muscles, the diaphragm, the abdominal muscles, and all limb muscles." [Wikipedia:Epaxial_and_Hypaxial_muscles] +subset: human_subset +subset: mouse_subset synonym: "hypaxial muscle" RELATED [XAO:0003228] synonym: "hypaxial muscles" EXACT OMO:0003004 [] xref: AAO:0000228 @@ -294146,6 +304892,8 @@ property_value: taxon_notes "The hypaxial muscles are located on the lower side id: UBERON:0008778 name: epaxial musculature def: "Musculature that is derived from the epaxial myotome region, ventral to the horizontal septum of the vertebrae. Epaxial muscles include other (dorsal) muscles associated with the vertebrae, ribs, and base of the skull." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Epaxial_and_hypaxial_muscles] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epaxial muscle" RELATED [XAO:0003229] synonym: "epaxial muscles" EXACT OMO:0003004 [] @@ -294168,6 +304916,8 @@ property_value: taxon_notes "The hypaxial muscles are located on the lower side id: UBERON:0008779 name: subclavius def: "The Subclavius is a small triangular muscle, placed between the clavicle and the first rib. Along with the pectoralis major and pectoralis minor muscles, the subclavius muscle makes up the anterior wall of the axilla." [Wikipedia:Subclavius_muscle] +subset: human_subset +subset: mouse_subset synonym: "musculus subclavius" RELATED OMO:0003011 [Wikipedia:Subclavius_muscle] synonym: "subclavicular muscle" RELATED [Wikipedia:Subclavius_muscle] xref: FMA:13410 @@ -294185,6 +304935,8 @@ name: inner cell mass derived epiblast def: "An embryonic structure that is derived from the inner cell mass and lies above the hypoblast and gives rise to the three primary germ layers." [MP:0003886] comment: The epiblast cells (appearing on day 8 of human embryonic development) make up a columnar epithelium with dense microvilli on the apical surface. During gastrulation, the epiblast cells undergo epithelial-to-mesenchymal transition and delaminate to become the loose mesenchyme of the primitive streak. The epiblast is present in postimplantation mouse embryos between E5.5-E7.5. subset: early_development +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "embryonic epiblast" RELATED [MP:0003886] xref: EHDAA2:0000444 @@ -294204,6 +304956,8 @@ id: UBERON:0008781 name: blastodisc derived epiblast def: "An epiblast (generic) that develops_from a blastodisc." [OBOL:automatic] subset: early_development +subset: human_subset +subset: mouse_subset xref: TAO:0000018 xref: ZFA:0000018 is_a: UBERON:0002532 ! epiblast (generic) @@ -294222,6 +304976,8 @@ id: UBERON:0008783 name: dorsal venous arch def: "The dorsal venous arch of the foot is a superficial vein that connects the small saphenous vein and the great saphenous vein. Anatomically, it is defined by where the dorsal veins of the first and fifth digit, respectively, meet the great saphenous vein and small saphenous vein." [Wikipedia:Dorsal_venous_arch_of_the_foot] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arcus venosus dorsalis pedis" EXACT [Wikipedia:Dorsal_venous_arch_of_the_foot] synonym: "arcus venosus dorsalis pedis" RELATED OMO:0003011 [Wikipedia:Dorsal_venous_arch_of_the_foot] synonym: "dorsal venous arch of foot" EXACT [FMA:44356] @@ -294242,6 +304998,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4e/Gr id: UBERON:0008784 name: lower limb segment def: "A limb segment that is part of a hindlimb." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "free lower limb segment" EXACT [FMA:24877] synonym: "free lower limb subdivision" EXACT [FMA:24877] synonym: "segment of free lower limb" EXACT [FMA:24877] @@ -294256,6 +305014,8 @@ relationship: part_of UBERON:0002103 ! hindlimb id: UBERON:0008785 name: upper limb segment def: "A limb segment that is part of a forelimb." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "free upper limb segment" EXACT [FMA:24876] synonym: "free upper limb subdivision" EXACT [FMA:24876] synonym: "segment of free upper limb" EXACT [FMA:24876] @@ -294270,6 +305030,8 @@ relationship: part_of UBERON:0002102 ! forelimb id: UBERON:0008786 name: third trochanter def: "The upper part of the gluteal tuberosity is often elongated into a roughened crest, on which a more or less well-marked, rounded tubercle, the third trochanter, is occasionally developed." [Wikipedia:Third_trochanter] +subset: human_subset +subset: mouse_subset synonym: "trochanter tertius" RELATED OMO:0003011 [Wikipedia:Third_trochanter] xref: FMA:75824 xref: Wikipedia:Third_trochanter @@ -294291,6 +305053,8 @@ relationship: in_taxon NCBITaxon:8492 ! Archosauria id: UBERON:0008788 name: posterior cranial fossa def: "The infratentorial compartment that contains the CEREBELLUM and BRAIN STEM. It is formed by the posterior third of the superior surface of the body of the sphenoid (SPHENOID BONE), by the occipital, the petrous, and mastoid portions of the TEMPORAL BONE, and the posterior inferior angle of the PARIETAL BONE." [MESH:A01.456.830.200, Wikipedia:Posterior_cranial_fossa] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fossa cranii posterior" RELATED OMO:0003011 [Wikipedia:Posterior_cranial_fossa] synonym: "posterior fossa" BROAD [ncithesaurus:Posterior] @@ -294309,6 +305073,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/c2/P id: UBERON:0008789 name: cranial fossa def: "Any of the three large depressions in the posterior, middle, and anterior aspects of the floor of the cranial cavity." [http://mw1.merriam-webster.com/medical/cranial%20fossa] +subset: human_subset +subset: mouse_subset xref: FMA:321144 is_a: UBERON:0004704 ! bone fossa intersection_of: UBERON:0004704 ! bone fossa @@ -294321,6 +305087,8 @@ property_value: editor_note "todo - review the relationships for this and its su id: UBERON:0008790 name: rugal fold def: "A ridge or fold, such as the rugae of the stomach, which are large folds in the mucous membrane of that organ." [http://medical-dictionary.thefreedictionary.com/Rugal+folds, Wikipedia:Rugae] +subset: human_subset +subset: mouse_subset synonym: "ruga" EXACT [Wikipedia:Rugae] synonym: "rugae" RELATED OMO:0003004 [Wikipedia:Rugae] xref: Wikipedia:Rugae @@ -294333,6 +305101,8 @@ property_value: editor_note "As currently defined this encompasses only mucuous id: UBERON:0008791 name: rugal fold of stomach def: "A rugal fold that is part of a stomach." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "gastric ruga" EXACT [FMA:15106] synonym: "gastric ruga(e)" RELATED [FMA:15106] synonym: "gastric rugae" EXACT OMO:0003004 [FMA:15106] @@ -294352,6 +305122,8 @@ relationship: part_of UBERON:0001199 {is_inferred="true", source="https://github id: UBERON:0008798 name: rugal fold of vagina def: "A rugal fold that is part of a vagina." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ruga of vagina" EXACT [FMA:19991] synonym: "vaginal ruga" EXACT [FMA:19991] xref: FMA:19991 @@ -294367,6 +305139,8 @@ relationship: part_of UBERON:0004983 {is_inferred="true", source="https://github id: UBERON:0008799 name: transverse palatine fold def: "Any of the the series of transverse folds (ridges) of the mucosa located on the anterior third part of the secondary (hard) palate of most mammalian species." [MP:0009652] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hard palate palatal rugae" EXACT OMO:0003004 [EMAPA:35638] synonym: "hard palate ruga" EXACT [] @@ -294400,6 +305174,8 @@ property_value: structure_notes "rugae are present on each side of the median pa id: UBERON:0008800 name: parietal endoderm def: "Primitive endoderm-derived tissue that lines the luminal surface of the mural trophectoderm[MP]." [MP:0011187, PMID:19201946] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal endoderm" RELATED [EMAPA:16053] xref: EMAPA:16053 @@ -294411,6 +305187,8 @@ relationship: part_of UBERON:0016887 ! entire extraembryonic component [Term] id: UBERON:0008801 name: parotid gland primordium +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001413 xref: EHDAA:9246 is_a: UBERON:0001048 {source="Obol"} ! primordium @@ -294419,6 +305197,8 @@ is_a: UBERON:0001048 {source="Obol"} ! primordium id: UBERON:0008802 name: cheek pouch def: "A pocketlike fold of skin in the cheeks of various animals, such as squirrels, gophers, and monkeys, that functions as a means of carrying food." [BTO:0002224] +subset: human_subset +subset: mouse_subset synonym: "buccal pouch" EXACT [] xref: BTO:0002224 xref: EMAPA:37452 {source="MA:th"} @@ -294435,6 +305215,8 @@ relationship: part_of UBERON:0001567 {source="BTO"} ! cheek id: UBERON:0008803 name: skin of cheek def: "A zone of skin that is part of a cheek." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cheek skin" EXACT [FMA:24759] xref: FMA:24759 @@ -294449,6 +305231,8 @@ id: UBERON:0008804 name: stylopharyngeus muscle def: "The stylopharyngeus is a muscle in the head that stretches between the styloid process and the pharynx." [Wikipedia:Stylopharyngeus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "M. stylopharyngeus" RELATED [Wikipedia:Stylopharyngeus_muscle] synonym: "musculus stylopharyngeus" RELATED OMO:0003011 [Wikipedia:Stylopharyngeus_muscle] synonym: "stylopharyngeus" EXACT [Wikipedia:Stylopharyngeus_muscle] @@ -294476,6 +305260,8 @@ property_value: external_definition "The stylopharyngeus is a pharyngeal arch II id: UBERON:0008805 name: gingival groove def: "The gingival sulcus is an area of potential space between a tooth and the surrounding gingival tissue and is lined by sulcular epithelium. The depth of the sulcus (Latin for groove) is bounded by two entities: apically by the gingival fibers of the connective tissue attachment and coronally by the free gingival margin." [Wikipedia:Gingival_sulcus] +subset: human_subset +subset: mouse_subset synonym: "gingival sulcus" EXACT [FMA:74580] synonym: "sulcus gingivalis" EXACT OMO:0003011 [FMA:TA] synonym: "sulcus gingivalis" RELATED OMO:0003011 [Wikipedia:Gingival_sulcus] @@ -294506,6 +305292,8 @@ relationship: in_taxon NCBITaxon:117569 ! Hyperoartia id: UBERON:0008807 name: coagulating gland def: "A lobe of the prostate in rodents that is thin and tubular and is attached to the lesser curvature of the paired seminal vesicles. Secretes substances that contribute to the formation of the copulatory plug." [MP:0002771, PMID:12645922, PMID:1806140, PMID:3308446] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior prostate gland" RELATED [EMAPA:29794] synonym: "prostate gland anterior lobe" RELATED [MA:0000402, MP:0002771] @@ -294524,6 +305312,8 @@ property_value: taxon_notes "In rodents, the prostate gland consists of three lo id: UBERON:0008808 name: prostate gland dorsolateral lobe def: "The rodent prostate lobe that lies in the triangular area between urethra and seminal vesicle." [MP:0009381, PMID:12645922, PMID:3308446] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "dorsolateral prostate" RELATED [] xref: BTO:0000541 @@ -294536,6 +305326,8 @@ relationship: contributes_to_morphology_of UBERON:0002367 ! prostate gland id: UBERON:0008809 name: foramina of scarpa def: "In the maxilla, occasionally two additional canals are present in the middle line of the palatine process; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal." [Wikipedia:Foramina_of_Scarpa] +subset: human_subset +subset: mouse_subset synonym: "foramina of scarpa" RELATED [Wikipedia:Foramina_of_Scarpa] xref: Wikipedia:Foramina_of_Scarpa is_a: UBERON:0000464 ! anatomical space @@ -294548,6 +305340,8 @@ id: UBERON:0008810 name: nasopalatine nerve def: "A branch of that maxillary nerve that innervates the mucous membrane of the hard palate." [http://medical-dictionary.thefreedictionary.com/nasopalatine+nerve, UBERON:cjm] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "naso-palatine nerve" RELATED [Wikipedia:Nasopalatine_nerve] synonym: "nasopalatine" RELATED [Wikipedia:Nasopalatine_nerve] synonym: "nasopalatine nerves" RELATED [Wikipedia:Nasopalatine_nerve] @@ -294571,6 +305365,8 @@ id: UBERON:0008811 name: intromittent organ def: "An external organ of a male organism that is specialized to deliver sperm during copulation. Intromittent organs are found most often in terrestrial species, as most aquatic species fertilize their eggs externally, although there are exceptions[WP]." [Wikipedia:Intromittent_organ] subset: grouping_class +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "aedeagus" NARROW SENSU [FBbt:00004850] synonym: "copulatory organ" RELATED [] @@ -294604,6 +305400,8 @@ relationship: in_taxon NCBITaxon:8509 ! Squamata id: UBERON:0008813 name: helicotrema def: "The part of the cochlear labyrinth where the scala tympani and the scala vestibuli meet. It is the main component of the cochlear apex. The hair cells in this area best detect low frequency sounds." [Wikipedia:Helicotrema] +subset: human_subset +subset: mouse_subset synonym: "apex of cochlea" BROAD [Wikipedia:Cochlea] synonym: "cochlear apex" BROAD [Wikipedia:Cochlea] synonym: "Scarpa's orifice" EXACT [FMA:61275] @@ -294621,6 +305419,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/19/Gr id: UBERON:0008814 name: pharyngeal arch system def: "A transient embryonic complex that comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming, which may include (depending on species) the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear[GO,modified]." [GO:0060037, GOC:dph] +subset: human_subset +subset: mouse_subset synonym: "embryonic pharyngeal complex" EXACT [] synonym: "pharyngeal apparatus" EXACT [] synonym: "pharyngeal arch complex" RELATED [] @@ -294663,6 +305463,8 @@ property_value: taxon_notes "Some hemichordate species can have as many as 200 g id: UBERON:0008816 name: embryonic head def: "A head that is part of a embryo." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: non_informative xref: CALOHA:TS-0246 xref: FBbt:00000155 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} @@ -294671,11 +305473,14 @@ is_a: UBERON:0000033 ! head intersection_of: UBERON:0000033 ! head intersection_of: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:8450003 ! embryonic craniocervical region [Term] id: UBERON:0008817 name: thymus primordium endoderm def: "An endoderm that is part of a thymus primordium." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000925 ! endoderm is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000925 ! endoderm @@ -294687,6 +305492,8 @@ relationship: part_of UBERON:0005562 ! thymus primordium id: UBERON:0008818 name: superior mediastinum def: "The superior mediastinum is that portion of the interpleural space which lies between the manubrium sterni in front, and the upper thoracic vertebrae behind." [Wikipedia:Superior_mediastinum] +subset: human_subset +subset: mouse_subset synonym: "mediastinum superius" RELATED OMO:0003011 [Wikipedia:Superior_mediastinum] synonym: "superior mediastinal part of chest" EXACT [FMA:9827] xref: FMA:9827 @@ -294702,6 +305509,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ab/Me id: UBERON:0008819 name: inferior mediastinum def: "Anterior, middle and posterior mediastinum." [Wikipedia:Inferior_mediastinum] +subset: human_subset +subset: mouse_subset synonym: "inferior mediastinal part of chest" EXACT [FMA:9828] xref: FMA:9828 xref: SCTID:243950006 @@ -294714,6 +305523,8 @@ relationship: part_of UBERON:0003728 {source="FMA"} ! mediastinum id: UBERON:0008820 name: anterior mediastinum def: "The anterior mediastinum exists only on the left side where the left pleura diverges from the mid-sternal line. It is narrow, above, but widens out a little below." [Wikipedia:Anterior_mediastinum] +subset: human_subset +subset: mouse_subset synonym: "anterior mediastinal part of chest" EXACT [FMA:9838] synonym: "mediastinum anterius" RELATED OMO:0003011 [Wikipedia:Anterior_mediastinum] xref: FMA:9838 @@ -294730,6 +305541,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ab/Me id: UBERON:0008821 name: middle mediastinum def: "The middle mediastinum is the broadest part of the interpleural space. It is made up of the pericardial sac and its contents." [Wikipedia:Middle_mediastinum] +subset: human_subset +subset: mouse_subset synonym: "mediastinum medium" RELATED OMO:0003011 [Wikipedia:Middle_mediastinum] synonym: "middle mediastinal part of chest" EXACT [FMA:9839] xref: FMA:9839 @@ -294745,6 +305558,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ab/Me id: UBERON:0008822 name: posterior mediastinum def: "The posterior mediastinum is an irregular triangular space running parallel with the vertebral column." [Wikipedia:Posterior_mediastinum] +subset: human_subset +subset: mouse_subset synonym: "mediastinum posterius" RELATED OMO:0003011 [Wikipedia:Posterior_mediastinum] synonym: "posterior mediastinal part of chest" EXACT [FMA:9840] xref: FMA:9840 @@ -294760,6 +305575,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ab/Me id: UBERON:0008823 name: neural tube derived brain def: "A brain that develops_from a neural tube." [https://github.com/obophenotype/uberon/issues/338, OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "vertebrate brain" NARROW [] is_a: UBERON:0000489 {source="ZFA"} ! cavitated compound organ is_a: UBERON:0000955 ! brain @@ -294775,6 +305592,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/338" xsd: id: UBERON:0008824 name: duct of epididymis def: "Any duct branching of of the main epididymis duct." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "epididymal duct" EXACT [MA:0001735] synonym: "epididymis duct" EXACT [FMA:18297] xref: EMAPA:36525 @@ -294795,6 +305614,8 @@ relationship: part_of UBERON:0001301 {source="FMA"} ! epididymis id: UBERON:0008826 name: pulmonary surfactant def: "A substance formed by type II alveolar cells composed of surface-active lipoprotein complex (phospholipoprotein)." [Wikipedia:Pulmonary_surfactant] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "alveolar surfactant" EXACT [FMA:62780] synonym: "lung surfactant" EXACT [MA:0002534] @@ -294817,6 +305638,8 @@ property_value: function_notes "surfactant" xsd:string id: UBERON:0008827 name: murine forestomach def: "A distinct rodent non-glandular region of the stomach which is demarcated from the glandular stomach by the limiting ridge (margo plicatus)." [MGI:anna, MP:0010784] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior stomach" RELATED [MGI:anna] synonym: "antrum cardiacum" RELATED OMO:0003011 [MGI:anna] @@ -294841,6 +305664,8 @@ property_value: taxon_notes "This class is based on the murine structure. Other id: UBERON:0008828 name: presphenoid bone def: "The anterior part of the body of the sphenoid bone in front of the basisphenoid. It is usually a separate bone in the young or fetus, but becomes a part of the sphenoid in the adult." [http://www.thefreedictionary.com/Presphenoid+bone, Wikipedia:Ossification_of_sphenoid#Presphenoid] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "presphenoidal bone" EXACT [] xref: EMAPA:36616 @@ -294860,6 +305685,8 @@ property_value: editor_note "TODO - account for developmental change" xsd:string id: UBERON:0008829 name: cerebellum external granule cell layer def: "Transient layer of the cerebellar cortex present during development which is composed of dividing and migrating granule cells[MP]." [MP:0000874, Wikipedia:Anatomy_of_the_cerebellum#Development] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "external granule layer" BROAD [] synonym: "granule cell layer" BROAD [MP:0000872] @@ -294878,6 +305705,8 @@ property_value: external_definition "The transient layer of the cerebellar corte [Term] id: UBERON:0008830 name: cerebellum internal granule cell layer +subset: human_subset +subset: mouse_subset synonym: "inner granular layer of cerebellar cortex" EXACT [BIRNLEX:790] xref: BIRNLEX:790 xref: EMAPA:35219 @@ -294893,6 +305722,8 @@ id: UBERON:0008831 name: inner spiral sulcus def: "A concavity in the floor of the cochlear duct formed by the overhanging vestibular lip." [http://www.drugs.com/dict/inner-spiral-sulcus.html] comment: part_of spiral sulcus in MA +subset: human_subset +subset: mouse_subset synonym: "internal spiral sulcus" EXACT [MA:0001197] synonym: "sulcus spiralis internus" EXACT [http://www.drugs.com/dict/inner-spiral-sulcus.html] xref: EMAPA:35438 @@ -294906,6 +305737,8 @@ id: UBERON:0008832 name: outer spiral sulcus def: "A concavity in the outer wall of the cochlear duct between the spiral prominence and the spiral organ." [http://www.drugs.com/dict/outer-spiral-sulcus.html] comment: part_of spiral sulcus in MA +subset: human_subset +subset: mouse_subset synonym: "external spiral sulcus" EXACT [MA:0001196] synonym: "sulcus spiralis externus" EXACT [http://www.drugs.com/dict/outer-spiral-sulcus.html] xref: EMAPA:35332 @@ -294919,6 +305752,8 @@ id: UBERON:0008833 name: great auricular nerve def: "A nerve arising from the second and third cervical nerves from the cervical plexus and innervating the skin over the parotid gland, the skin of part of the ear, the adjacent portion of the scalp, cheek, and angle of the jaw." [http://medical-dictionary.thefreedictionary.com/great+auricular+nerve, Wikipedia:Great_auricular_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "great auricular" RELATED [Wikipedia:Great_auricular_nerve] synonym: "greater auricular nerve" RELATED [Wikipedia:Great_auricular_nerve] synonym: "nervus auricularis magnus" EXACT OMO:0003011 [Wikipedia:Great_auricular_nerve] @@ -294948,6 +305783,8 @@ property_value: structure_notes "sometimes bears antennae and eyes" xsd:string id: UBERON:0008835 name: hepatic diverticulum def: "An out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. Constitutes the first morphological sign of the embryonic liver. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile ducts." [http://www.stembook.org/node/512, MP:MP] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "diverticulum hepaticum" RELATED OMO:0003011 [Wikipedia:Hepatic_diverticulum] synonym: "liver diverticulum" EXACT [XAO:0000101] @@ -294974,6 +305811,8 @@ property_value: taxon_notes "in mice, the hepatic diverticulum forms by E9 and e [Term] id: UBERON:0008836 name: liver bud +subset: human_subset +subset: mouse_subset xref: BTO:0001642 is_a: UBERON:0004185 ! endodermal part of digestive tract is_a: UBERON:0007499 {source="cjm"} ! epithelial sac @@ -294985,6 +305824,8 @@ relationship: part_of UBERON:0006235 {source="cjm"} ! foregut-midgut junction [Term] id: UBERON:0008837 name: palmar/plantar part of autopod +subset: human_subset +subset: mouse_subset is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002470 ! autopod region @@ -294992,6 +305833,8 @@ relationship: part_of UBERON:0002470 ! autopod region id: UBERON:0008838 name: metapodial pad def: "A thick, spongy layer of tissue located under the metacarpal and metatarsal joints of the autopod." [ncithesaurus:Footpad] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "foot pad" RELATED [] synonym: "footpad" RELATED [MA:0003010] @@ -295009,6 +305852,8 @@ property_value: editor_note "check synonyms - re footpad" xsd:string id: UBERON:0008839 name: palmar pad def: "An autopod pad that is in the metacarpal region." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "hind foot pad" RELATED [] synonym: "metacarpal foot pad" RELATED [] synonym: "metacarpal pad" RELATED [] @@ -295028,6 +305873,8 @@ property_value: external_ontology_notes "the EMAPA term refers to the plural" xs id: UBERON:0008840 name: plantar pad def: "An autopod pad that is in the metatarsal region." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "fore foot pad" RELATED [] synonym: "metatarsal foot pad" RELATED [] synonym: "metatarsal pad" RELATED [] @@ -295047,12 +305894,16 @@ property_value: external_definition "The canine metatarsal pad is large and hear id: UBERON:0008841 name: suspensory ligament def: "A ligament that supports a body part, especially an organ." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008845 ! nonskeletal ligament [Term] id: UBERON:0008842 name: suspensory ligament of testis def: "The cranial atrophic portion of the urogenital ridge attached to the cranial pole of the intraabdominal embryonic testis." [http://www.medilexicon.com/medicaldictionary.php?t=49790, Wikipedia:Scrotal_ligament] +subset: human_subset +subset: mouse_subset synonym: "scrotal ligament" RELATED [Wikipedia:Gubernaculum] xref: SCTID:279592009 xref: Wikipedia:Scrotal_ligament @@ -295069,6 +305920,8 @@ relationship: part_of UBERON:0004876 {source="Obol"} ! urogenital fold id: UBERON:0008843 name: gubernaculum testis def: "The fetal ligament attached to the inferior end of the epididymis and testis and, at its other end, to the bottom of the scrotum; it is present during, and is thought to guide, the descent of the testis into the scrotum and then atrophies." [BTO:0002813] +subset: human_subset +subset: mouse_subset synonym: "gubernaculum" BROAD [MA:0003248] synonym: "Hunter's gubernaculum" RELATED [BTO:0002813] synonym: "male gubernaculum" EXACT [] @@ -295091,6 +305944,8 @@ id: UBERON:0008844 name: gubernaculum (female) def: "A gubernaculum that is part of a female reproductive system." [OBOL:automatic] comment: The upper part of the gubernaculum, together with the ovarian artery and vein form the suspensory ligament of the ovary,[1] which suspends the ovary from the pelvic wall.; The lower gubernaculum has two vestigial remnants in females, the ovarian ligament and the round ligament of the uterus (ligamentum teres uteri) which respectively serve to support the ovaries and uterus in the pelvis +subset: human_subset +subset: mouse_subset synonym: "female gubernaculum" EXACT [] synonym: "gubernaculum ovarii" RELATED [] is_a: UBERON:0004346 ! gubernaculum (male or female) @@ -295104,6 +305959,8 @@ relationship: part_of UBERON:0000474 ! female reproductive system id: UBERON:0008845 name: nonskeletal ligament def: "A ligament that does not connect two skeletal elements." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "fibrous ligament" RELATED [Wikipedia:Ligament] synonym: "non-skeletal ligament" EXACT [] xref: FMA:25625 @@ -295118,6 +305975,8 @@ property_value: external_ontology_notes "this class is used more generally than id: UBERON:0008846 name: skeletal ligament def: "Dense regular connective tissue connecting two or more adjacent skeletal elements[VSAO,modified]." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "articular larua" EXACT [Wikipedia:Ligament] synonym: "articular ligament" EXACT [Wikipedia:Ligament] synonym: "ligament" BROAD [VSAO:0000072, ZFA:0001675] @@ -295153,6 +306012,8 @@ name: ovarian ligament def: "A fibrous ligament that connects the ovary to the lateral surface of the uterus." [Wikipedia:Ovarian_ligament] comment: The ligament runs in the broad ligament of the uterus, which is a fold of peritoneum rather than a fibrous ligament. Specifically, it is located in the parametrium subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ligament of ovary" EXACT [FMA:55422] synonym: "ligamentum ovarii proprium" EXACT OMO:0003011 [FMA:TA] synonym: "proper ovarian ligament" EXACT [FMA:55422] @@ -295173,6 +306034,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0008848 name: cranial suspensory ligament def: "Connects the cranial tip of the future gonad to the dorsocranial abdominal cavity." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: EMAPA:30068 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament @@ -295183,6 +306046,8 @@ property_value: editor_note "TODO - check - add cranial ovarian susp ligaments" id: UBERON:0008851 name: ectoplacental cavity def: "Closed space within the ectoplacental cone, formed by the fusion of the parts of the amniotic fold that separate it from the amniotic cavity[MP]. a developmental cavity that exists in some mammals and is derived by division of the proamniotic space; it is further removed from the embryo than the amniotic cavity in some mammals." [http://www.medilexicon.com/medicaldictionary.php?s=epamniotic+cavity, MP:0011207] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epamniotic cavity" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=epamniotic+cavity] synonym: "epamniotic cavity" RELATED [MP:0011207] @@ -295197,6 +306062,8 @@ relationship: part_of UBERON:0004364 ! ectoplacental cone id: UBERON:0008852 name: visceral yolk sac def: "Extraembryonic tissue membrane, formed from the visceral endoderm and the extraembryonic mesoderm, which is located ventral to the embryonic disc and is connected to the presumptive midgut of the embryo; the yolk that it contains is the site of embryonic hematopoiesis and vitelline circulation is involved in early embryonic circulation; it is the origin of the primordial germ cells." [MP:0001718] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "secondary yolk sac" EXACT [MP:0001718] synonym: "umbilical vesicle" EXACT [MP:0001718] @@ -295209,6 +306076,8 @@ is_a: UBERON:0001040 ! yolk sac id: UBERON:0008853 name: parietal yolk sac def: "Tissue that consists of two cellular layers (parietal endoderm and trophoblast) separated by a relatively thick nonvascular basement membrane (Reichert's membrane), and acts as a protective layer to supports and facilitates transport of nutrients between the uterine tissue and the yolk sac cavity." [MP:0011203, PMID:1150659, PMID:21123814] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "primary yolk sac" EXACT [MP:0011203] xref: EHDAA2:0003237 @@ -295219,6 +306088,8 @@ is_a: UBERON:0001040 ! yolk sac id: UBERON:0008854 name: root of molar tooth def: "The part of a molar tooth that is implanted in the gum; mandibular and maxillary molars usually have two and three roots, respectively." [MP:0011165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "molar root" EXACT [MP:0011166] synonym: "molar tooth root" EXACT [FMA:85302] @@ -295233,6 +306104,7 @@ relationship: part_of UBERON:0003655 ! molar tooth id: UBERON:0008855 name: placenta metrial gland def: "A group of granular epithelial cells in the uterine muscle beneath the placenta that develops during pregnancy in rodents and some other species." [MP:0010777] +subset: mouse_subset subset: organ_slim subset: pheno_slim xref: MA:0001723 @@ -295245,6 +306117,8 @@ relationship: part_of UBERON:0002450 {source="MP"} ! decidua id: UBERON:0008856 name: stomach muscularis externa def: "The smooth muscle layer of the stomach wall that functions to churn and mix food and gastric secretions as well as to move food along the digestive tract to the intestines." [MP:0010779] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "gastric muscularis" EXACT [FMA:14909] synonym: "muscle layer of stomach" EXACT [FMA:14909] @@ -295269,6 +306143,8 @@ property_value: structure_notes "the muscularis externa in the stomach differs f id: UBERON:0008857 name: stomach smooth muscle circular layer def: "The middle layer of the muscularis; it is continuous with the circular layer of the esophagus, but is absent in the fundus and lies concentric to the longitudinal axis of the stomach; the circular layer is normally tonically constricted forming a functional pyloric sphincter, which controls the movement of chyme into the duodenum." [MP:0010780] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "circular layer of gastric muscularis" EXACT [FMA:14911] synonym: "circular muscle layer of stomach" EXACT [FMA:14911] @@ -295292,6 +306168,8 @@ property_value: function_notes "This layer wraps in a circular orientation aroun id: UBERON:0008858 name: pyloric canal def: "The short narrow part of the stomach extending from the pyloric antrum to the pyloric sphincter." [MP:0010791, Wikipedia:Pyloric_canal] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "canalis pyloricus" EXACT [Wikipedia:Pyloric_canal] synonym: "canalis pyloricus" RELATED OMO:0003011 [Wikipedia:Pyloric_canal] @@ -295310,6 +306188,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/33/I id: UBERON:0008859 name: cardiac gastric gland def: "A gastric gland in the cardiac region of the stomach; cardiac glands are fewer in number than in the fundus and body, and secrete mucin which coats the stomach and protects it[MP]." [MP:0010795, Wikipedia:Cardiac_glands] +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "cardiac gland" RELATED [FMA:14920] @@ -295337,6 +306217,8 @@ property_value: external_ontology_notes "Kardong places this in the glandular ep id: UBERON:0008860 name: intermediate gastric gland def: "Any of the branched tubular glands in the mucosa of the fundus and body of the stomach that secrete most of the digestive substances secreted by the stomach." [MP:0010796] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0000325 {source="Obol"} ! gastric gland is_a: UBERON:0010038 ! fundic gastric gland @@ -295347,6 +306229,8 @@ property_value: editor_note "todo, check this class" xsd:string id: UBERON:0008861 name: pyloric gastric gland def: "The gastric glands in the pyloric region of the stomach; the pyloric glands secrete mucin, which coats the stomach and protects it, and hormones such as gastrin and enkephalin[MP]." [MP:0010797, Wikipedia:Pyloric_gland] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "glandula pylorica" EXACT [FMA:14922] synonym: "pyloric antrum gland" EXACT [OBOL:automatic] @@ -295375,6 +306259,8 @@ id: UBERON:0008862 name: stomach smooth muscle inner oblique layer def: "The innermost layer of the muscularis; it is not present in all sections of the stomach but is clearly seen in the fundus and near the lesser curvature of the corpus; the oblique fibers disappear distally (towards the pyloric antrum); the oblique layer is responsible for creating the motion that churns and physically breaks down the food." [MP:0010804] comment: The only layer of the three which is not seen in other parts of the digestive system[WP]. +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "inner oblique muscle layer of stomach" EXACT [] synonym: "oblique fiber layer of gastric muscularis" EXACT [FMA:14912] @@ -295395,6 +306281,8 @@ property_value: function_notes "This layer is responsible for creating the motio id: UBERON:0008863 name: stomach smooth muscle outer longitudinal layer def: "The most superficial layer of the muscularis; it has two sections, a longitudinal layer that is common with the esophagus and ends in the corpus, and a longitudinal layer that originates in the corpus and spreads into the duodenum." [http://medimagery.com/anatomy/stomach/layers-of-the-stomach.html, MP:0010805] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "longitudinal layer of gastric muscularis" EXACT [FMA:14910] synonym: "muscle layer 1 of stomach" EXACT [] @@ -295413,6 +306301,8 @@ relationship: superficial_to UBERON:0002439 ! myenteric nerve plexus id: UBERON:0008866 name: enamel knot def: "A transient cluster of cells in the central part of the dental epithelium facing the dental mesenchyme, which acts as an organizing center, providing positional information for tooth morphogenesis and regulating the growth of tooth cusps." [MP:0010864] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: BTO:0005791 is_a: UBERON:0004121 ! ectoderm-derived structure @@ -295425,6 +306315,8 @@ relationship: part_of UBERON:0005176 {source="MP"} ! tooth enamel organ id: UBERON:0008867 name: trabecular network of bone def: "The network of intersecting plates and spicules in cancellous bone which form a meshwork of intercommunicating spaces filled with blood vessels and marrow; in mature bone, the trabeculae are aligned in parallel with the lines of major compressive or tensile force." [MP:0010867] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bone trabecula" RELATED [MP:0010867] synonym: "bone trabeculae" RELATED [MP:0010867] @@ -295440,6 +306332,8 @@ id: UBERON:0008870 name: pulmonary alveolar parenchyma def: "The distinguishing cell types of the lung alveolar tissue, including pulmonary epithelial cells (pneumocytes), alveolar capillary endothelial cells, interstitial cells (fibroblasts) and alveolar macrophages." [MP:0010901] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37942 {source="MA:th"} is_a: UBERON:0008946 ! lung parenchyma @@ -295457,6 +306351,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0008873 name: alveolar pore def: "The openings in the alveolar septum that permit air flow between adjacent alveoli." [MP:0010904] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37391 {source="MA:th"} is_a: UBERON:0004111 ! anatomical conduit @@ -295468,6 +306364,8 @@ id: UBERON:0008874 name: pulmonary acinus def: "The largest lung subunit in which all airways participate in gas exchange, and it is composed of the parenchyma of the respiratory bronchioles, alveolar ducts, and alveoli." [MP:0010911, PMID:2014492, PMID:3382030, Wikipedia:Acinus#The_Lungs] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "acinus pulmonaris" EXACT OMO:0003011 [FMA:7313, FMA:TA] synonym: "arbor alveolaris" EXACT OMO:0003011 [FMA:7313, FMA:TA] @@ -295490,6 +306388,8 @@ id: UBERON:0008876 name: hypodermis skeletal muscle layer alt_id: UBERON:0010934 def: "Any skeletal muscle organ in the hypodermis / superficial fascia." [ISBN:0123813611, MP:0011157] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hypodermal muscle layer" EXACT [MP:0011157] synonym: "hypodermis muscle layer" EXACT [MP:0011157] @@ -295513,6 +306413,8 @@ property_value: editor_note "We follow MP and treat this as part of the hypoderm id: UBERON:0008877 name: epidermal-dermal junction def: "The multi-layer basement membrane between the dermis and epidermis that serves to adhere the dermis and epidermis, provide mechanical support for the epidermis, and forms a barrier to cells and large molecules across the junction." [MP:0011159] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "dermal-epidermal junction" EXACT [FMA:70963] synonym: "dermo-epidermal junction" EXACT [] @@ -295532,6 +306434,8 @@ relationship: part_of UBERON:0000014 {source="MP"} ! zone of skin [Term] id: UBERON:0008878 name: palmar part of manus +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "front of hand" EXACT [FMA:24920] synonym: "palm" EXACT [FMA:24920] @@ -295548,6 +306452,8 @@ is_a: UBERON:0008837 ! palmar/plantar part of autopod [Term] id: UBERON:0008879 name: ligament of pinna +subset: human_subset +subset: mouse_subset synonym: "auricular ligament" EXACT [MA:0001228] synonym: "ligament of auricle" EXACT [FMA:61035] synonym: "pinna ligament" EXACT [FMA:61035] @@ -295573,6 +306479,8 @@ relationship: in_taxon NCBITaxon:6340 {source="Wikipedia"} ! Annelida id: UBERON:0008881 name: rostral migratory stream def: "Unique telencephalic subventricular zones that extend from the lateral ventricles into the olfactory bulbs. Newly produced GABAergic interneurons migrate along the RMS and settle in the bulb." [BIRNLEX:1702, PMID:12453055] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "RMS" RELATED OMO:0003000 [BTO:0003412] synonym: "rostral migratory pathway" RELATED [Wikipedia:Rostral_migratory_stream] @@ -295594,6 +306502,8 @@ property_value: taxon_notes "In rodents, the anterior region of the SVZ produces id: UBERON:0008882 name: spinal cord commissure def: "The nerve fiber tracts that span the midline of the spinal cord." [MP:0009694] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37955 {source="MA:th"} is_a: UBERON:0001020 ! nervous system commissure @@ -295607,6 +306517,8 @@ relationship: part_of UBERON:0002240 ! spinal cord id: UBERON:0008883 name: osteoid def: "Bone tissue that is an unmineralized bone matrix deposited by osteoblasts prior to the mineralization of bone tissue." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000046] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "osteoid tissue" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "pre-bone" EXACT [PSPUB:0000170] @@ -295631,6 +306543,8 @@ property_value: external_ontology_notes "Note that in VSAO this was classified b id: UBERON:0008884 name: left putamen def: "A putamen that is part of a left cerebral hemisphere." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:72829 xref: HBA:4288 is_a: UBERON:0001874 ! putamen @@ -295644,6 +306558,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0008885 name: right putamen def: "A putamen that is part of a right cerebral hemisphere." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:72828 xref: HBA:4289 is_a: UBERON:0001874 ! putamen @@ -295658,6 +306574,8 @@ id: UBERON:0008886 name: pulmonary vascular system def: "The part of the cardiovascular system consisting of all pulmonary arteries and all pulmonary veins." [ISBN:0073040584, Wikipedia:Pulmonary_circulation] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "pulmonary circulatory system" EXACT [FMA:45621] synonym: "pulmonary system" EXACT [ISBN:0073040584] xref: FMA:45621 @@ -295673,6 +306591,8 @@ property_value: external_definition "Subdivision of cardiovascular system which id: UBERON:0008887 name: rectal venous plexus def: "The hemorrhoidal plexus (or rectal venous plexus) surrounds the rectum, and communicates in front with the vesical venous plexus in the male, and the uterovaginal plexus in the female. A free communication between the portal and systemic venous systems is established through the hemorrhoidal plexus." [Wikipedia:Rectal_venous_plexus] +subset: human_subset +subset: mouse_subset synonym: "haemorrhoidal plexus" RELATED [Wikipedia:Rectal_venous_plexus] synonym: "hemorrhoidal plexus" RELATED [Wikipedia:Rectal_venous_plexus] synonym: "plexus haemorrhoidalis" RELATED OMO:0003011 [Wikipedia:Rectal_venous_plexus] @@ -295692,6 +306612,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/69/Gr id: UBERON:0008888 name: vesical venous plexus def: "The vesical plexus envelops the lower part of the bladder and the base of the prostate and communicates with the pudendal and prostatic plexuses. It is drained, by means of several vesical veins, into the hypogastric veins." [Wikipedia:Vesical_venous_plexus] +subset: human_subset +subset: mouse_subset synonym: "plexus venosus vesicalis" RELATED OMO:0003011 [Wikipedia:Vesical_venous_plexus] xref: FMA:18934 xref: SCTID:31510008 @@ -295708,6 +306630,8 @@ id: UBERON:0008889 name: uterine venous plexus def: "The uterine plexuses lie along the sides and superior angles of the uterus between the two layers of the broad ligament, and communicate with the ovarian and vaginal plexuses. They are drained by a pair of uterine veins on either side: these arise from the lower part of the plexuses, opposite the external orifice of the uterus, and open into the corresponding hypogastric vein." [Wikipedia:Uterine_venous_plexus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "plexus venosus uterinus" RELATED OMO:0003011 [Wikipedia:Uterine_venous_plexus] synonym: "uterine plexus" RELATED [Wikipedia:Uterine_venous_plexus] xref: FMA:29712 @@ -295739,6 +306663,8 @@ is_a: UBERON:0002535 {source="AAO"} ! gill id: UBERON:0008894 name: pharyngeal gill precursor def: "A primordium or bud that develops into a gill." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "external gill anlage" RELATED [XAO:0000448] synonym: "gill primordium" EXACT [XAO:0000448] synonym: "internal gill bud" EXACT [ZFA:0001107] @@ -295756,6 +306682,8 @@ id: UBERON:0008895 name: splanchnocranium def: "Subdivision of endoskeleton derived from pharyngeal arches." [https://orcid.org/0000-0002-6601-2165, ISBN:0073040584, Wikipedia:Facial_skeleton] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "branchial arch skeleton" RELATED [] synonym: "gill arch skeleton" RELATED [] synonym: "pharyngeal arch" RELATED INCONSISTENT [VSAO:0000149] @@ -295792,6 +306720,8 @@ id: UBERON:0008896 name: post-hyoid pharyngeal arch def: "A pharyngeal arch that is posterior to the hyoid arch. i.e. any pharyngeal arch with a number 3 or higher." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "branchial arch" EXACT [ZFA:0001613] synonym: "branchial arches" EXACT OMO:0003004 [ZFA:0001613] synonym: "branchial bar" EXACT [ZFA:0001613] @@ -295847,6 +306777,8 @@ property_value: taxon_notes "This class groups together various structures that id: UBERON:0008902 name: lateral recess of third ventricle def: "Lateral protrusion of the third ventricle." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "lateral recess" BROAD OMO:0003004 [ZFA:0000231] synonym: "lateral recess of diencephalic ventricle" EXACT [ZFIN:ZDB-PUB-091221-27] synonym: "lateral recesses" RELATED OMO:0003004 [ZFA:0000231] @@ -295909,6 +306841,8 @@ property_value: external_definition "Any of the sensory nerves that innervate me id: UBERON:0008907 name: dermal bone def: "Skeletal element that forms superficially in the organism, usually in association with the ectoderm[VSAO]." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/267, VSAO:0000130] +subset: human_subset +subset: mouse_subset synonym: "dermal bones" RELATED OMO:0003004 [ZFA:0001590] xref: AAO:0010769 xref: TAO:0001590 @@ -295928,6 +306862,8 @@ property_value: external_ontology_notes "other AOs are not yet in sync with this id: UBERON:0008909 name: perichordal bone def: "Bone element that is adjacent to the notochord." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000307] +subset: human_subset +subset: mouse_subset synonym: "perichordal bone" RELATED [ZFA:0001629] synonym: "perichordal bones" EXACT OMO:0003004 [ZFA:0001629] xref: AAO:0010777 @@ -295946,6 +306882,8 @@ property_value: external_definition "Replacement bone that forms within the conn id: UBERON:0008911 name: chondral bone def: "Replacement bone that forms within or surrounding a cartilaginous skeletal element." [https://github.com/obophenotype/uberon/issues/139, zfin:curator] +subset: human_subset +subset: mouse_subset xref: AAO:0010774 xref: ZFA:0001693 is_a: UBERON:0012075 {source="ZFA"} ! replacement bone @@ -295956,6 +306894,8 @@ id: UBERON:0008913 name: perichondral bone def: "Bone element that is located on the surface of a cartilage element." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000308] comment: include the subtyping under 'replacement bone', for consistency with ZFA, but VSAO does not include this intermediate class +subset: human_subset +subset: mouse_subset synonym: "perichondral bone" RELATED [ZFA:0001630] synonym: "perichondral bones" EXACT OMO:0003004 [ZFA:0001630] xref: AAO:0010779 @@ -295972,6 +306912,8 @@ property_value: external_definition "Replacement bone that forms within the conn id: UBERON:0008915 name: pore def: "An anatomical space that is an opening, usually at the end of a canal or duct, on the surface of the integument or the lining of an internal anatomical space." [TAO:curator] +subset: human_subset +subset: mouse_subset xref: AAO:0010441 xref: NCIT:C70672 xref: TAO:0001791 @@ -296043,6 +306985,8 @@ replaced_by: UBERON:0010378 id: UBERON:0008921 name: substratum of layer of retina def: "Missing definition for term UBERON:0008921. Please replace it using linked reference." [UBERON:CL_meeting_20110725] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0022303 ! nervous system cell part layer relationship: part_of UBERON:0000966 ! retina @@ -296051,6 +306995,8 @@ relationship: part_of UBERON:0000966 ! retina id: UBERON:0008922 name: sublaminar layer S1 def: "A retinal neural layer that is immediately adjacent to the inner nuclear layer and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] +subset: human_subset +subset: mouse_subset xref: CP:0000113 is_a: UBERON:0008927 ! sublaminar layers S1 or S2 is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5 @@ -296069,6 +307015,8 @@ relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2 id: UBERON:0008923 name: sublaminar layer S2 def: "A retinal neural layer that is immediately adjacent to the S1 and S3 layers and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] +subset: human_subset +subset: mouse_subset xref: CP:0000114 is_a: UBERON:0008927 ! sublaminar layers S1 or S2 is_a: UBERON:0008928 ! sublaminar layers S2 or S3 @@ -296089,6 +307037,8 @@ relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3 id: UBERON:0008924 name: sublaminar layer S3 def: "A retinal neural layer that is immediately adjacent to the S2 and S4 layers and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] +subset: human_subset +subset: mouse_subset xref: CP:0000115 is_a: UBERON:0008928 ! sublaminar layers S2 or S3 is_a: UBERON:0009731 ! sublaminar layers S3 or S4 @@ -296109,6 +307059,8 @@ relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3 id: UBERON:0008925 name: sublaminar layer S4 def: "A retinal neural layer that is immediately adjacent to the S3 and S5 layer and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] +subset: human_subset +subset: mouse_subset xref: CP:0000116 is_a: UBERON:0008929 ! sublaminar layers S4 or S5 is_a: UBERON:0009731 ! sublaminar layers S3 or S4 @@ -296128,6 +307080,8 @@ relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5 id: UBERON:0008926 name: sublaminar layer S5 def: "A retinal neural layer that is immediately adjacent to the retinal ganglion cell layer and comprises 20 percent of the ganglion plexiform layer of retina." [GOC:tfm] +subset: human_subset +subset: mouse_subset xref: CP:0000117 is_a: UBERON:0008929 ! sublaminar layers S4 or S5 is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5 @@ -296144,6 +307098,8 @@ relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5 id: UBERON:0008927 name: sublaminar layers S1 or S2 def: "One of sublaminar layers S1 or S2." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] +subset: human_subset +subset: mouse_subset xref: CP:0000118 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 @@ -296156,6 +307112,8 @@ property_value: dc:contributor https://github.com/tmeehan id: UBERON:0008928 name: sublaminar layers S2 or S3 def: "One of sublaminar layers S2 or S3." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] +subset: human_subset +subset: mouse_subset xref: CP:0000119 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008923 ! sublaminar layer S2 @@ -296168,6 +307126,8 @@ property_value: dc:contributor https://github.com/tmeehan id: UBERON:0008929 name: sublaminar layers S4 or S5 def: "One of sublaminar layers S4 or S5." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] +subset: human_subset +subset: mouse_subset xref: CP:0000120 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008925 ! sublaminar layer S4 @@ -296181,6 +307141,8 @@ id: UBERON:0008930 name: somatosensory cortex def: "Area of the parietal lobe concerned with receiving general sensations. It lies posterior to the central sulcus." [MESH:A08.186.211.730.885.213.670.675] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "primary somatic sensory cortex" RELATED [FMA:242642] synonym: "somatic sensory cortex" EXACT [FMA:242642] @@ -296207,6 +307169,8 @@ property_value: editor_note "TODO - add relationship to system (not part of, as id: UBERON:0008933 name: primary somatosensory cortex def: "(Chapin & Lin, 1984, rat): the region considered as the SI cortex is not a cytoarchitecturally homogeneous structure but consists instead of a patchwork array of areas containing dense aggregations of layer IV granule cells, surrounded by granule-cell-sparse regions. As was shown by Welker (b71,b76), and in our own mapping studies (see Fig. 3), this discontinuous pattern of granular, or koniocortical, zones contains within itself a map of the ratbs cutaneous periphery. There are clear subtypes within this cytoarchitectural subregion, notably including the bgranular aggregateb type of cytoarchitecture characteristic of the paw, limb, and mystacial vibrissae areas, and the bbarrel-fieldb type (originally described by Woolsey and Van der Loos, b70) seen in the nose and perioral regions. In the mouse, but not the rat, such barrels also cover the whole whisker representation (Welker and Woolsey, b74)." [NLX:143551] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "postcentral gyrus" RELATED [Wikipedia:Sensory_system] synonym: "primary somatosensory area" RELATED [BAMS:SSp] @@ -296230,6 +307194,8 @@ property_value: external_ontology_notes "ABA disjointness - Removed relationship id: UBERON:0008934 name: secondary somatosensory cortex def: "The area of the upper bank of the lateral sulcus that is involved in somatic sensation." [ISBN:0838580343, MP:0000863] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "S2" BROAD OMO:0003000 [] synonym: "somatosensory area 2" EXACT [Wikipedia:Sensory_system] @@ -296306,6 +307272,8 @@ property_value: editor_note "to be ceded to MOLO" xsd:string id: UBERON:0008942 name: gastropod cerebral ganglion def: "The cerebral ganglia are primarily sensual centres, that compute information from the eyes as well as from the tactile and position sensors (statocystes). Besides coordination they also serve the locational memory of a snail." [BTO:0001843] +subset: human_subset +subset: mouse_subset synonym: "cerebral ganglion" EXACT [BTO:0001843] xref: BTO:0001843 is_a: UBERON:0000045 {source="BTO"} ! ganglion @@ -296336,6 +307304,8 @@ relationship: protects UBERON:0007378 ! egg yolk id: UBERON:0008945 name: extraembryonic endoderm def: "An extraembryonic epithelium that is formed by the delaminated cells of the primitive endoderm (hypoblast) that goes on to form the yolk sac. In mammals, as in avians, these cells do not produce any part of the newborn organism (i.e. they are extraembryonic)." [http://www.ana.ed.ac.uk/database/humat/notes/extraemb/mesoder.htm, https://orcid.org/0000-0002-6601-2165, ISBN:9780878932504] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000473 xref: EHDAA:105 xref: EMAPA:16052 @@ -296350,6 +307320,8 @@ property_value: development_notes "The origin of extraembryonic endoderm is a hi id: UBERON:0008946 name: lung parenchyma def: "A parenchyma that is part of a lung." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "parenchyma of lung" RELATED [BTO:0000763] synonym: "pulmonary parenchyma" RELATED [EMAPA:35522] synonym: "respiratory portion of lung" EXACT [FMA:27360] @@ -296366,6 +307338,8 @@ relationship: part_of UBERON:0002048 {source="FMA"} ! lung [Term] id: UBERON:0008947 name: respiratory primordium +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004069 xref: NCIT:C34283 xref: UMLS:C1514898 {source="ncithesaurus:Respiratory_Primordium"} @@ -296377,6 +307351,8 @@ relationship: part_of UBERON:0003258 ! endoderm of foregut id: UBERON:0008948 name: upper lobe of lung def: "A lobe of the lung that is closest to the head." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "cranial lobe of lung" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "lobus superior" EXACT [FMA:7334] synonym: "lobus superior pulmonis" EXACT OMO:0003011 [FMA:TA] @@ -296399,6 +307375,8 @@ property_value: editor_note "the logical definition must have a clause stating p id: UBERON:0008949 name: lower lobe of lung def: "The bottom most subdivision of either the right or left lung." [ncithesaurus:Lung_Lower_Lobe] +subset: human_subset +subset: mouse_subset synonym: "inferior lobe of lung" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "lobus inferior" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "lobus inferior pulmonis" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -296416,12 +307394,16 @@ property_value: editor_note "defining lobes spatially across species" xsd:string id: UBERON:0008950 name: azygous lobe of lung def: "The azygous lobe of the lung is an accessory lobe of the right lung. It is rare and usually associated with an abnormality of the azygous vein. It is produced by an aberrant position of the azygous vein near the hilum of the lung. It divides the right superior lobe near the apex of the lung down to the hilum in roughly the median plane. The fissure created, the meso-azygous fissure, is lined by both visceral and parietal pleura. The lobe lies superomedial to the fissure." [http://www.e-radiography.net/radpath/a/azygoslobe.htm, http://www.gpnotebook.co.uk] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004890 ! right lung accessory lobe [Term] id: UBERON:0008951 name: left lung lobe def: "A lobe of lung that is part of a left lung." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lobe of left lung" EXACT [] synonym: "lobe of the left lung" EXACT [] xref: EHDAA:2981 @@ -296438,6 +307420,7 @@ property_value: taxon_notes "1 in mice, divided into 2 in human by a single inte id: UBERON:0008952 name: upper lobe of left lung def: "The lobe of the left lung that is closest to the head." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset synonym: "left lung cranial lobe" EXACT [EHDAA2:0000953] synonym: "left upper lobe" EXACT [FMA:7370] synonym: "left upper lobe of lung" EXACT [FMA:7370] @@ -296464,6 +307447,7 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l id: UBERON:0008953 name: lower lobe of left lung def: "A lower lobe of lung that is part of a left lung." [OBOL:automatic] +subset: human_subset synonym: "inferior lobe of left lung" EXACT [FMA:7371] synonym: "left lower lobe" EXACT [FMA:7371] synonym: "left lower lobe of lung" EXACT [FMA:7371] @@ -296490,6 +307474,7 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l id: UBERON:0008954 name: lingula of left lung def: "Anterioinferior portion of left upper lung lobe." [ISBN:0123813611, Wikipedia:Lingula_of_left_lung] +subset: human_subset synonym: "left pulmonary lingula" EXACT [FMA:7433] synonym: "lingula of lung" EXACT [FMA:7433] synonym: "lingula of the lung" EXACT [] @@ -296511,6 +307496,8 @@ property_value: taxon_notes "the lingula of the left lung in humans is not norma id: UBERON:0008955 name: middle lobe of lung def: "A lobe of the lung that is situated somewhere between an upper lobe and lower lobe." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "lung middle lobe" EXACT [] xref: galen:MiddleLobeOfLung xref: SCTID:362900002 @@ -296523,6 +307510,8 @@ property_value: taxon_notes "mice have 4 right lobes (5 in some schemes), humans id: UBERON:0008956 name: involucrum def: "A layer of new bone growth outside existing bone seen in pyogenic osteomyelitis. It results from the stripping off of the periosteum by the accumulation of pus within the bone, and new bone growing from the periosteum." [Wikipedia:Involucrum] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Involucrum is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001474 {source="Wikipedia"} ! bone element @@ -296531,6 +307520,8 @@ relationship: part_of UBERON:0001474 {source="Wikipedia"} ! bone element id: UBERON:0008957 name: sequestrum def: "A piece of dead bone that has become separated during the process of necrosis from normal/sound bone.." [Wikipedia:Sequestrum] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Sequestrum is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001474 {source="Wikipedia"} ! bone element @@ -296548,6 +307539,8 @@ relationship: part_of UBERON:0001474 {source="Wikipedia:Evolution_of_cetaceans"} id: UBERON:0008959 name: auditory bulla def: "A hollow bony structure on the ventral, posterior portion of the skull of placental mammals that encloses parts of the middle and inner ear. In most species, it is formed by the tympanic part of the temporal bone." [Wikipedia:Auditory_bulla] +subset: human_subset +subset: mouse_subset synonym: "auditory bullae" RELATED OMO:0003004 [] synonym: "bulla" BROAD [] synonym: "bulla tympanica" RELATED OMO:0003011 [https://orcid.org/0000-0002-6601-2165] @@ -296594,6 +307587,8 @@ relationship: part_of UBERON:0002048 ! lung id: UBERON:0008962 name: forelimb bone def: "A bone that is part of a forelimb region. Examples: humerus, any of the phalanges. Counter-example: scapula (a bone of the pectoral girdle). Note that we consider the forelimb to end at the shoulder." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "free forelimb bone" EXACT [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] synonym: "wing bone" NARROW SENSU [Geisha:syn, NCBITaxon:8782, OBOL:automatic] xref: GAID:178 @@ -296636,6 +307631,8 @@ relationship: part_of UBERON:0008937 {source="BTO"} ! visceral hump id: UBERON:0008967 name: centrum semiovale def: "The semioval center is the white matter found underneath the grey matter on the surface of the cerebrum. The term is synonymous with cerebral white matter. The white matter, located in each hemisphere between the cerebral cortex and nuclei, as a whole has a semioval shape. It consists of cortical projection fibers, association fibers and cortical fibers." [Wikipedia:Semioval_center] +subset: human_subset +subset: mouse_subset synonym: "centrum ovale" EXACT OMO:0003011 [FMA:61939, FMA:TA] synonym: "centrum semiovale" RELATED OMO:0003011 [Wikipedia:Semioval_center] synonym: "cerebral white matter" RELATED [] @@ -296660,6 +307657,8 @@ property_value: external_ontology_notes "WP suggests a merge with cerebral white id: UBERON:0008969 name: dental follicle def: "A sac containing the developing tooth and its odontogenic organ. The dental follicle (DF) differentiates into the periodontal ligament. In addition, it may be the precursor of other cells of the periodontium, including osteoblasts, cementoblasts and fibroblasts. They develop into the alveolar bone, the cementum with Sharpey's fibers and the periodontal ligament fibers respectively." [Wikipedia:Dental_follicle] +subset: human_subset +subset: mouse_subset synonym: "dental sac" RELATED [MA:0003121, Wikipedia:Dental_follicle] synonym: "tooth follicle" RELATED [BTO:0000337] xref: BTO:0000337 @@ -296680,6 +307679,8 @@ relationship: part_of UBERON:0008281 ! tooth bud id: UBERON:0008971 name: left colon def: "The distal portion of the colon; it develops embryonically from the hindgut and functions in the storage and elimination of waste." [BTO:0000646] +subset: human_subset +subset: mouse_subset synonym: "distal colon" RELATED [BTO:0000646] xref: BTO:0000646 xref: CALOHA:TS-0202 @@ -296695,6 +307696,8 @@ relationship: part_of UBERON:0001155 {source="BTO"} ! colon id: UBERON:0008972 name: right colon def: "The proximal portion of the colon, extending from the ileocecal valve usually to a point proximal to the left colic flexure; it develops embryonically from the terminal portion of the midgut and functions in absorption." [BTO:0000649] +subset: human_subset +subset: mouse_subset synonym: "proximal colon" RELATED [BTO:0000649] xref: BTO:0000649 xref: galen:RightColon @@ -296710,6 +307713,8 @@ id: UBERON:0008974 name: apocrine gland def: "Any exocrine gland whose cells bud their secretions off through the plasma membrane producing membrane-bound vesicles in the lumen; the apical portion of the secretory cell of the gland pinches off and enters the lumen; it loses part of its cytoplasm in their secretions; apocrine secretion is functional during hormonal stress or puberty; an example of true apocrine glands are mammary glands, responsible for secreting breast milk." [MGI:anna] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim subset: pheno_slim synonym: "true apocrine gland" EXACT [] @@ -296730,6 +307735,8 @@ id: UBERON:0008975 name: oviduct shell gland def: "A gland in the posterior expansion of the oviduct that secretes the calcareous surroundings of the egg shell." [ISBN:978-0226870137] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "nidamental gland" RELATED [] synonym: "shell gland" EXACT [BTO:0001241] xref: BTO:0001241 @@ -296757,6 +307764,8 @@ property_value: has_relational_adjective "venenosalivary" xsd:string id: UBERON:0008977 name: pes anserinus of tibia def: "The pes anserinus is the insertion of the conjoined tendons of three muscles onto the anteromedial (front and inside) surface of the proximal extremity of the tibia." [Wikipedia:Pes_anserinus_(leg)] +subset: human_subset +subset: mouse_subset synonym: "pes anserine" RELATED [Wikipedia:Pes_anserinus_(leg)] synonym: "pes anserinus" EXACT [BTO:0001507] synonym: "pes anserinus of leg" RELATED [Wikipedia:Pes_anserinus_(leg)] @@ -296776,6 +307785,8 @@ property_value: editor_note "Consider adding muscle insertion site class" xsd:st id: UBERON:0008978 name: anal sac def: "In carnivores, either of two sacs found between the internal and external anal sphincters, lined with sebaceous glands and in some species with apocrine glands." [BTO:0001681, http://orcid.org/0000-0002-2825-0621] +subset: human_subset +subset: mouse_subset xref: BTO:0001681 xref: EMAPA:37395 {source="MA:th"} xref: MA:0003058 @@ -296789,6 +307800,8 @@ relationship: in_taxon NCBITaxon:40674 ! Mammalia id: UBERON:0008979 name: carcass def: "A body of a multi-cellular organism that is no longer living." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "cadaver" RELATED [BTO:0001965] synonym: "dead body" RELATED [BTO:0001965] xref: BTO:0001965 @@ -296811,6 +307824,8 @@ consider: SCTID:361576004 id: UBERON:0008982 name: fascia def: "A dense regular connective tissue that that connects muscles together[WP, modified]." [Wikipedia:Fascia] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fascia cluster" EXACT [FMA:30318] xref: BTO:0002930 @@ -296830,6 +307845,8 @@ relationship: part_of UBERON:0002204 ! musculoskeletal system id: UBERON:0008987 name: renal parenchyma def: "The functional tissue of the kidney, consisting of the nephrons." [BTO:0003604] +subset: human_subset +subset: mouse_subset synonym: "kidney parenchyma" RELATED [BTO:0003604] synonym: "parenchyma of kidney" EXACT [FMA:15574] xref: BTO:0003604 @@ -296844,6 +307861,8 @@ relationship: part_of UBERON:0002113 {source="FMA"} ! kidney id: UBERON:0008989 name: submucosal esophageal gland def: "One of the racemose glands in the walls of the esophagus that in humans are small and serve principally to lubricate the food but in some birds secrete a milky fluid on which the young are fed." [BTO:0003634, Wikipedia:Esophageal_glands] +subset: human_subset +subset: mouse_subset synonym: "esophageal gland" EXACT [FMA:9404] synonym: "glandulae oesophageae" EXACT [Wikipedia:Esophageal_glands] synonym: "mucous gland of submucosa of esophagus" EXACT [FMA:9404] @@ -296869,6 +307888,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e8/Il id: UBERON:0008992 name: chorion frondosum def: "The part of the chorion where the villi persist, forming the foetal part of the placenta." [BTO:0003677] +subset: human_subset +subset: mouse_subset synonym: "shaggy chorion" RELATED [BTO:0003677] xref: BTO:0003677 xref: SCTID:37333001 @@ -296880,6 +307901,8 @@ id: UBERON:0008993 name: habenular nucleus def: "Either of the two neural nuclei within the habenula." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ganglion habenulae" RELATED [BTO:0003685] synonym: "habenular nuclei" RELATED OMO:0003004 [DHBA:HN] synonym: "nucleus habenulae" RELATED [BTO:0003685] @@ -296900,6 +307923,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0008994 name: equine glandular stomach def: "Stomach found in horses; includes cardiac, proper gastric and pyloric glandular zones." [BTO:0003791] +subset: human_subset +subset: mouse_subset synonym: "stomachus glandularis" RELATED [BTO:0003791] xref: BTO:0003791 is_a: UBERON:0000945 {source="BTO"} ! stomach @@ -296909,6 +307934,8 @@ property_value: editor_note "We have a distinct class for 'glandular region of s id: UBERON:0008995 name: nucleus of cerebellar nuclear complex def: "Four accumulations of gray substance embedded in the white substance of the cerebellum, comprising the nucleus dentatus, nucleus emboliformis, nucleus globosus, and nucleus fastigii." [BTO:0003835] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebellar nucleus" EXACT [BTO:0003835] synonym: "deep cerebellar nucleus" EXACT [] @@ -296936,6 +307963,8 @@ name: vasculature of brain alt_id: UBERON:0005284 def: "System pertaining to blood vessels in the brain." [BTO:0003840] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "brain vasculature" EXACT [] synonym: "cerebrovascular system" EXACT [BTO:0003840] synonym: "intracerebral vasculature" EXACT [FMA:61935] @@ -296966,6 +307995,8 @@ relationship: part_of UBERON:0008963 {source="BTO"} ! hoof id: UBERON:0009000 name: ischial spine def: "A bony process projecting backward and medialward from the posterior border of the ischium." [BTO:0004149] +subset: human_subset +subset: mouse_subset synonym: "spina ischialis" EXACT [FMA:17028] synonym: "spine of ischium" RELATED [Wikipedia:Ischial_spine] synonym: "spine of the ischium" RELATED [Wikipedia:Ischial_spine] @@ -296986,6 +308017,8 @@ property_value: external_ontology_notes "BTO places this in the vertebral column id: UBERON:0009002 name: placental membrane def: "The membrane separating the fetal from the maternal blood in the placenta." [BTO:0004196] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "placental barrier" RELATED [BTO:0004196] xref: BTO:0004196 @@ -297003,6 +308036,8 @@ relationship: part_of UBERON:0005292 ! extraembryonic tissue id: UBERON:0009005 name: femorotibial joint def: "One of the two primary bendings of a typical leg, pertains to the femur and the tibia." [BTO:0004396] +subset: human_subset +subset: mouse_subset synonym: "femoratibial joint" EXACT [] synonym: "knee" RELATED [] synonym: "tibiofemoral joint" EXACT [FMA:43571] @@ -297021,6 +308056,8 @@ id: UBERON:0009006 name: deep inguinal lymph node def: "One of several small inconstant lymph nodes, proximal, intermediate and distal deep to the fascia lata and medial to the femoral vein; they receive lymph from the deep structures of the lower limb, from the glans penis and from superficial inguinal nodes; efferents pass to the external iliac nodes." [BTO:0004548] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "deep inguinal node" EXACT [FMA:44225] synonym: "femoral lymph node" EXACT [PMID:28602173] synonym: "nodi lymphatici inguinales profundi" RELATED OMO:0003011 [BTO:0004548] @@ -297036,6 +308073,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0009007 name: superficial inguinal lymph node def: "A group of 12-20 lymph nodes that lie in the subcutaneous tissue below the inguinal ligament and along the terminal part of the great saphenous vein; they drain the skin and subcutaneous tissue of the lower abdominal wall, perineum, buttocks, external genitalia, and lower limbs." [BTO:0004549] +subset: human_subset +subset: mouse_subset synonym: "lymph node of Cloquet" EXACT [FMA:5036] synonym: "lymph node of Rosenmuller" EXACT [FMA:5036] synonym: "nodi lymphatici inguinales superficiali" RELATED OMO:0003004 [] @@ -297054,6 +308093,8 @@ id: UBERON:0009009 name: carotid sinus nerve def: "A sensory branch of the glossopharyngeal nerve (CN IX) carrying signals from the baroceptors (blood pressure receptors) in the bifurcation of the carotid artery to the nucleus of the solitary tract (nucleus solitarius)." [http://medical-dictionary.thefreedictionary.com/carotid+sinus+nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "carotid branch of glossopharyngeal nerve" EXACT [FMA:53488] synonym: "Hering sinus nerve" EXACT [http://medical-dictionary.thefreedictionary.com/carotid+sinus+nerve] synonym: "ramus sinus carotici" EXACT OMO:0003011 [FMA:53488] @@ -297075,6 +308116,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0009010 name: periurethral tissue def: "Any portion of tissue that surrounds a urethra." [UBERON:cjm] +subset: human_subset +subset: mouse_subset xref: BTO:0005081 xref: SCTID:256880003 is_a: UBERON:0000479 ! tissue @@ -297087,6 +308130,8 @@ relationship: surrounds UBERON:0000057 ! urethra id: UBERON:0009013 name: white fibrocartilage def: "Fibrocartilage in which strong bundles of white fibrous tissue predominate." [http://www.ufrgs.br/imunovet/molecular_immunology/muscles.html] +subset: human_subset +subset: mouse_subset xref: EMAPA:37806 {source="MA:th"} xref: MA:0000486 xref: SCTID:3008003 @@ -297097,6 +308142,8 @@ property_value: editor_note "consider merging with fibrocartilage" xsd:string id: UBERON:0009014 name: lower back skin def: "A zone of skin that is part of a lower back." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: organ_slim xref: EMAPA:37281 {source="MA:th"} xref: MA:0000504 @@ -297111,6 +308158,8 @@ relationship: part_of UBERON:0005462 ! lower back id: UBERON:0009015 name: upper back skin def: "A zone of skin that is part of a dorsal thoracic segment of trunk." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37280 {source="MA:th"} xref: MA:0000510 xref: SCTID:304890003 @@ -297123,6 +308172,8 @@ relationship: part_of UBERON:0008231 ! dorsal thoracic segment of trunk [Term] id: UBERON:0009016 name: ciliary stroma +subset: human_subset +subset: mouse_subset synonym: "ocular ciliary stroma" EXACT [] synonym: "stroma of ciliary body" EXACT [] xref: EMAPA:35241 @@ -297137,6 +308188,8 @@ relationship: part_of UBERON:0001775 {source="MA"} ! ciliary body id: UBERON:0009020 name: left uterine horn def: "An uterine horn that is in the left side of a uterus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37374 {source="MA:th"} xref: MA:0001727 xref: SCTID:245482004 @@ -297150,6 +308203,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0009022 name: right uterine horn def: "An uterine horn that is in the right side of a uterus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37375 {source="MA:th"} xref: MA:0001728 xref: SCTID:245481006 @@ -297163,6 +308218,7 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0009024 name: adrenal gland X zone def: "A transient cortical layer juxtaposed to the medulla and the zona reticularis; in males, this zone rapidly involutes at the onset of puberty whereas this zone persists in females until the first pregnancy or later in adulthood in non-pregnant females." [MP:0008296] +subset: mouse_subset subset: pheno_slim synonym: "juvenile zone" RELATED [MA:0001888] synonym: "X zone" BROAD [MP:0008296] @@ -297179,6 +308235,8 @@ id: UBERON:0009025 name: gastroepiploic artery def: "One of two (right and left) arteries along the greater curvature of the stomach that supply blood to the greater omentum and stomach." [NCIT:C52857] subset: grouping_class +subset: human_subset +subset: mouse_subset xref: EMAPA:37082 {source="MA:th"} xref: MA:0001962 xref: MESH:D024405 @@ -297197,6 +308255,8 @@ relationship: supplies UBERON:0005448 ! greater omentum id: UBERON:0009026 name: iliac circumflex artery def: "One of two (deep circumflex and superficial circumflex) iliac arteries that supply the lower abdomen, inguinal lymph nodes, sartorius, and tensor fasciae latae." [ncithesaurus:Circumflex_Iliac_Artery] +subset: human_subset +subset: mouse_subset xref: EMAPA:37084 {source="MA:th"} xref: MA:0001975 xref: NCIT:C52863 @@ -297208,6 +308268,8 @@ is_a: UBERON:0001637 {source="MA"} ! artery id: UBERON:0009027 name: vesical artery def: "An artery that supplies blood to the urinary bladder." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "arteria vesicali" EXACT OMO:0003011 [] synonym: "vesical arteries" EXACT OMO:0003004 [] xref: EMAPA:37131 {source="MA:th"} @@ -297223,6 +308285,8 @@ relationship: supplies UBERON:0001255 ! urinary bladder id: UBERON:0009029 name: pudendal vein def: "Either the internal or external pudendal vein, running from the genital-vulvar area and abdomen and down the leg." [http://orcid.org/0000-0002-6601-2165, https://veintreatmentcenter.com/vein-information/pudendal-veins/] +subset: human_subset +subset: mouse_subset synonym: "pudic vein" RELATED [] synonym: "vena pudendae" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "vena pudendales" EXACT OMO:0003011 [doi:10.1002/ca.23705] @@ -297237,6 +308301,8 @@ relationship: part_of UBERON:0002355 ! pelvic region of trunk id: UBERON:0009030 name: left pulmonary vein def: "Vein that drains left lung and returns blood to the heart." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: EMAPA:37165 {source="MA:th"} xref: MA:0002207 xref: NCIT:C48946 @@ -297252,6 +308318,8 @@ property_value: external_definition "A vein that returns oxygenated blood from t id: UBERON:0009032 name: right pulmonary vein def: "Vein that drains right lung and returns blood to the heart." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: EMAPA:37379 {source="MA:th"} xref: MA:0002208 xref: NCIT:C48947 @@ -297267,6 +308335,8 @@ property_value: external_definition "A vein that returns oxygenated blood from t id: UBERON:0009035 name: renal straight tubule def: "Any region of a nephron tubule that is straight. Examples: distal convoluted tubule, proximal convoluted tuble." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "kidney straight tubule" EXACT [MA:0002634] synonym: "straight tubule" EXACT [] xref: EMAPA:37489 {source="MA:th"} @@ -297279,6 +308349,8 @@ is_a: UBERON:0007685 ! region of nephron tubule id: UBERON:0009038 name: sulcus ampullaris def: "The groove on the external surface of the ampulla of each semicircular duct where the nerve enters the ampullary crest." [http://www.medilexicon.com/medicaldictionary.php?s=ampullary+groove] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ampullary groove" EXACT [FMA:74584] synonym: "ampullary sulcus" EXACT [] @@ -297294,6 +308366,8 @@ id: UBERON:0009039 name: lymph node germinal center def: "A germinal center that is located in a lymph node." [CL:tm] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "germinal center" BROAD [BTO:0003671] synonym: "lymph node activated zone" RELATED [] @@ -297318,6 +308392,8 @@ id: UBERON:0009040 name: deep circumflex iliac artery def: "The deep circumflex iliac artery (or deep iliac circumflex artery) is an artery in the pelvis that travels along the iliac crest of the pelvic bone." [Wikipedia:Deep_circumflex_iliac_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria circumflexa ilium profunda" EXACT [Wikipedia:Deep_circumflex_iliac_artery] synonym: "arteria circumflexa ilium profunda" RELATED OMO:0003011 [Wikipedia:Deep_circumflex_iliac_artery] synonym: "deep iliac circumflex" RELATED [Wikipedia:Deep_circumflex_iliac_artery] @@ -297344,6 +308420,8 @@ id: UBERON:0009041 name: superficial circumflex iliac artery def: "The superficial iliac circumflex artery (or superficial circumflex iliac), the smallest of the cutaneous branches of the femoral artery, arises close to the superficial epigastric artery, and, piercing the fascia lata, runs lateralward, parallel with the inguinal ligament, as far as the crest of the ilium. It divides into branches which supply the integument of the groin, the superficial fascia, and the superficial subinguinal lymph glands, anastomosing with the deep iliac circumflex, the superior gluteal and lateral femoral circumflex arteries." [Wikipedia:Superficial_circumflex_iliac_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria circumflexa ilium superficialis" EXACT [Wikipedia:Superficial_iliac_circumflex_artery] synonym: "iliac circumflex artery" RELATED [Wikipedia:Superficial_iliac_circumflex_artery] synonym: "superficial circumflex iliac artery" RELATED [Wikipedia:Superficial_iliac_circumflex_artery] @@ -297365,6 +308443,8 @@ id: UBERON:0009042 name: prostatic venous plexus def: "The prostatic veins form a well-marked prostatic plexus which lies partly in the fascial sheath of the prostate and partly between the sheath and the prostatic capsule. It communicates with the pudendal and vesical plexuses." [Wikipedia:Prostatic_venous_plexus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "plexus venosus prostaticus" RELATED OMO:0003011 [Wikipedia:Prostatic_venous_plexus] synonym: "pudendal venous plexus" RELATED [FMA:29711] xref: FMA:29711 @@ -297382,6 +308462,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bd/Gr id: UBERON:0009044 name: pudendal venous plexus def: "The pudendal plexus (vesicoprostatic plexus) lies behind the arcuate pubic ligament and the lower part of the pubic symphysis, and in front of the bladder and prostate. Its chief tributary is the deep dorsal vein of the penis, but it also receives branches from the front of the bladder and prostate. It communicates with the vesical plexus and with the internal pudendal vein and drains into the vesical and hypogastric veins." [Wikipedia:Pudendal_plexus_(veins)] +subset: human_subset +subset: mouse_subset xref: SCTID:65326006 xref: Wikipedia:Pudendal_plexus_(veins) is_a: UBERON:0001593 ! venous plexus @@ -297391,6 +308473,8 @@ relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0009046 name: inferior external pudendal vein +subset: human_subset +subset: mouse_subset synonym: "inferior external pudic vein" RELATED [] xref: EMAPA:37155 {source="MA:th"} xref: MA:0002203 @@ -297399,6 +308483,8 @@ is_a: UBERON:0018253 ! external pudendal vein [Term] id: UBERON:0009047 name: superior external pudendal vein +subset: human_subset +subset: mouse_subset synonym: "superior external pudic vein" RELATED [] xref: EMAPA:37192 {source="MA:th"} xref: MA:0002204 @@ -297408,6 +308494,8 @@ is_a: UBERON:0018253 ! external pudendal vein id: UBERON:0009048 name: deep external pudendal vein subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "deep external pudic vein" RELATED [] synonym: "vena pudendae externalis profunda" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "vena pudendales externalis profunda" EXACT OMO:0003011 [doi:10.1002/ca.23705] @@ -297424,6 +308512,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0009049 name: superficial external pudendal vein subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "superficial external pudic vein" RELATED [] synonym: "vena pudendae externalis superficialis" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "vena pudendales externalis superficialis" EXACT OMO:0003011 [doi:10.1002/ca.23705] @@ -297440,6 +308530,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0009050 name: nucleus of solitary tract def: "A neural nucleus that is part of the solitary tract nuclear complex. The solitary tract and nucleus are structures in the brainstem that carry and receive visceral sensation and taste from the facial (VII), glossopharyngeal (IX) and vagus (X) cranial nerves. [WP,unvetted]." [OBOL:automatic, Wikipedia:Solitary_nucleus] +subset: human_subset +subset: mouse_subset synonym: "nuclei tractus solitarii" RELATED OMO:0003011 [NeuroNames:742] synonym: "nucleus of the solitary tract" RELATED [BIRNLEX:1429] synonym: "nucleus of the tractus solitarius" EXACT [BIRNLEX:1429] @@ -297481,6 +308573,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/30/Gr [Term] id: UBERON:0009051 name: gelatinous nucleus of solitary tract +subset: human_subset +subset: mouse_subset xref: FMA:77463 xref: MBA:674 is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract @@ -297488,6 +308582,8 @@ is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract [Term] id: UBERON:0009052 name: medial nucleus of solitary tract +subset: human_subset +subset: mouse_subset xref: FMA:229585 xref: MBA:691 is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract @@ -297495,6 +308591,8 @@ is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract [Term] id: UBERON:0009053 name: dorsal nucleus of trapezoid body +subset: human_subset +subset: mouse_subset synonym: "dorsal nucleus of trapezoid body" EXACT [BIRNLEX:2575] synonym: "nucleus dorsalis corporis trapezoidei" EXACT OMO:0003011 [] xref: BIRNLEX:2575 @@ -297516,6 +308614,8 @@ relationship: never_in_taxon NCBITaxon:33511 ! Deuterostomia [Term] id: UBERON:0009055 name: closed circulatory system +subset: human_subset +subset: mouse_subset is_a: UBERON:0001009 {source="GO"} ! circulatory system property_value: editor_note "consider merging with cardiovascular system?" xsd:string property_value: taxon_notes "The circulatory systems of all vertebrates, as well as of annelids (for example, earthworms) and cephalopods (squid and octopus) are closed, just as in humans. Still, the systems of fish, amphibians, reptiles, and birds show various stages of the evolution of the circulatory system" xsd:string @@ -297524,6 +308624,8 @@ property_value: taxon_notes "The circulatory systems of all vertebrates, as well id: UBERON:0009056 name: two-pass circulatory system def: "A closed circulatory system in which blood passes twice through the heart to supply the body once." [GO:0035905, Wikipedia:Double_circulatory_system] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Double_circulatory_system is_a: UBERON:0009055 ! closed circulatory system @@ -297531,6 +308633,8 @@ is_a: UBERON:0009055 ! closed circulatory system id: UBERON:0009057 name: one-pass circulatory system def: "A closed circulatory system in which blood passes once through the heart to supply the body once." [GO:0035907] +subset: human_subset +subset: mouse_subset is_a: UBERON:0009055 ! closed circulatory system [Term] @@ -297538,6 +308642,8 @@ id: UBERON:0009058 name: faveolus def: "A bellows-shaped respiratory unit extending from the outer wall of the lung into a central air space." [PMID:12869615] comment: Dunker (1978) coined the terms ediculae or faveoli to describe the unit structure of the reptilian parenchymal, which are analogous to mammalian alveoli, but are up to 1,000 times larger than alveoli of similar sized mammals[PMID:12625309] +subset: human_subset +subset: mouse_subset synonym: "edicula" RELATED SENSU [PMID:12625309] synonym: "faveoli" RELATED OMO:0003004 [] synonym: "lung faveolus" EXACT [] @@ -297701,48 +308807,53 @@ relationship: part_of UBERON:0009074 ! syrinx organ [Term] id: UBERON:0009089 -name: inner medulla vasa recta descending limb +name: inner medulla descending vasa recta +subset: human_subset +subset: mouse_subset xref: KUPO:0001003 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the inner medullar parallel to the descending limb" xsd:string {external_ontology="CL"} [Term] id: UBERON:0009090 -name: outer medulla vasa recta descending limb +name: outer medulla descending vasa recta +subset: human_subset +subset: mouse_subset xref: KUPO:0001004 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the outer medullar parallel to the descending limb" xsd:string {external_ontology="CL"} [Term] id: UBERON:0009091 -name: vasa recta ascending limb +name: ascending vasa recta subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: KUPO:0001005 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta parallel to the ascending limb" xsd:string {external_ontology="CL"} [Term] id: UBERON:0009092 -name: inner medulla vasa recta ascending limb +name: inner medulla ascending vasa recta +subset: human_subset +subset: mouse_subset xref: KUPO:0001006 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the inner medulla parallel to the ascending limb" xsd:string {external_ontology="CL"} [Term] id: UBERON:0009093 -name: outer medulla vasa recta ascending limb +name: outer medulla ascending vasa recta +subset: human_subset +subset: mouse_subset xref: KUPO:0001007 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the outer medulla parallel to the ascending limb" xsd:string {external_ontology="CL"} @@ -297750,6 +308861,8 @@ property_value: external_ontology_notes "This class was created in order to alig id: UBERON:0009095 name: tip of renal papilla subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "papillary tip" EXACT [KUPO:0001009] synonym: "papillary tips" EXACT OMO:0003004 [KUPO:0001009] xref: KUPO:0001009 @@ -297768,6 +308881,8 @@ consider: UBERON:0009097 id: UBERON:0009097 name: gravid organism def: "An organism containing a developing embryo, fetus, or unborn offspring within the body." [BTO:0004733] +subset: human_subset +subset: mouse_subset synonym: "gravid" RELATED [BTO:0004733] synonym: "pregnant adult" RELATED [BTO:0004733] synonym: "pregnant adult stage" RELATED [BTO:0004733] @@ -297786,6 +308901,8 @@ relationship: participates_in GO:0007565 ! female pregnancy id: UBERON:0009098 name: gravid uterus def: "The uterus in pregnancy." [http://medical-dictionary.thefreedictionary.com/gravid+uterus] +subset: human_subset +subset: mouse_subset synonym: "womb" RELATED [] xref: NCIT:C12406 xref: ncithesaurus:Gravid_Uterus @@ -297848,6 +308965,8 @@ is_obsolete: true id: UBERON:0009114 name: cervical thymus def: "A mature thymus that is entirely part of the cervical region." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: organ_slim is_a: UBERON:0002370 ! thymus intersection_of: UBERON:0002370 ! thymus @@ -297861,6 +308980,8 @@ property_value: taxon_notes "A cervical thymus is a pathological structure in a id: UBERON:0009115 name: thoracic thymus def: "A mature thymus that is entirely part of thoracic region." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: organ_slim is_a: UBERON:0002370 ! thymus is_a: UBERON:0005178 ! thoracic cavity element @@ -297892,6 +309013,8 @@ id: UBERON:0009117 name: indifferent gonad def: "A gonad prior to differentiating into a definitive testis or ovary." [http://www.medterms.com/script/main/art.asp?articlekey=8981] comment: typically part of the embryo - however, in male tammar wallabies the gonads are indifferent at the neonatal stage[8827321] +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "gonad rudiment" RELATED [] xref: EHDAA2:0000716 @@ -297947,6 +309070,8 @@ property_value: external_definition "Branched region of the gill where respirato id: UBERON:0009121 name: vomeronasal nerve def: "Nerve carrying fibers from the vomeronasal organ epithelium to the accessory olfactory bulb." [AAO:DSM, http://orcid.org/0000-0002-6601-2165, ISBN:0471888893] +subset: human_subset +subset: mouse_subset synonym: "accessory olfactory bulb vomeronasal nerve" RELATED [BAMS:vn] xref: AAO:0010608 xref: BAMS:vn @@ -297972,6 +309097,8 @@ id: UBERON:0009122 name: adenohypophyseal placode def: "The adenohypophyseal placode forms the anterior lobe of the pituitary gland and gives rise to the endocrine secretory cells of the pituitary." [http://www.ncbi.nlm.nih.gov/books/NBK53175/] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "pituitary placode" RELATED [ZFA:0001198] xref: EFO:0000229 xref: TAO:0001198 @@ -297988,6 +309115,8 @@ id: UBERON:0009124 name: geniculate placode def: "Rostralmost epibranchial placode. Associated with 1st branchial cleft." [NCBIBook:NBK53175] comment: Taxonomic equivalence to EHDAA2 class made on basis of shared development: gives rise to geniculate ganglion +subset: human_subset +subset: mouse_subset synonym: "epibranchial placode 1" EXACT [EHDAA2:0004206] synonym: "facial epibranchial placode" EXACT [XAO:0004211] synonym: "facial placode" EXACT [ZFA:0001295] @@ -298005,6 +309134,8 @@ id: UBERON:0009125 name: petrosal placode def: "Epibranchial placode between geniculate and nodose. Associated with 2nd branchial cleft." [NCBIBook:NBK53175] comment: Taxonomic equivalence to EHDAA2 class made on basis of shared development: gives rise to glossopharyngeal ganglion +subset: human_subset +subset: mouse_subset synonym: "epibranchial placode 2" EXACT [EHDAA2:0004207] synonym: "glossopharyngeal epibranchial placode" EXACT [XAO:0004212] synonym: "glossopharyngeal IX placode" EXACT [ISBN:0471888893] @@ -298020,6 +309151,8 @@ id: UBERON:0009126 name: nodosal placode def: "Caudalmost epibranchial placode. Associated with 3rd branchial cleft." [NCBIBook:NBK53175] comment: Taxonomic equivalence to EHDAA2 class made on basis of shared development: Gives rise to inferior vagus ganglion. Note that ZFA has 4 vagal placodes +subset: human_subset +subset: mouse_subset synonym: "epibranchial placode 3" EXACT [EHDAA2:0004208] synonym: "nodose placode" EXACT [XAO:0004213] synonym: "nodose placodes" EXACT OMO:0003004 [XAO:0004213] @@ -298037,6 +309170,8 @@ name: epibranchial ganglion def: "Cranial ganglion which develops from an epibranchial placode." [PMID:20133851, ZFIN:curator] comment: Epibranchial ganglia orchestrate the development of the cranial neurogenic crest subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "epibranchial ganglia" EXACT OMO:0003004 [ZFA:0001555] xref: BTO:0006250 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: TAO:0001555 @@ -298068,6 +309203,8 @@ property_value: external_definition "Specialized series of dorsolateral ectoderm id: UBERON:0009129 name: right atrium endocardium def: "Endocardium that is part of the right atrium." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "endocardium of right atrium" EXACT [FMA:7281] synonym: "right atrial endocardium" EXACT [FMA:7281] synonym: "right atrium endocardial tissue" RELATED [VHOG:0001228] @@ -298090,6 +309227,8 @@ relationship: part_of UBERON:0006218 {source="EHDAA2"} ! common atrial chamber [Term] id: UBERON:0009130 name: dorsal meso-duodenum +subset: human_subset +subset: mouse_subset xref: RETIRED_EHDAA2:0000411 xref: SCTID:361433003 is_a: UBERON:0002050 {source="EHDAA2"} ! embryonic structure @@ -298107,6 +309246,8 @@ consider: SCTID:361481005 id: UBERON:0009132 name: peroneus def: "One of a group of three muscles fibularis (peronæus) longus, brevis, and tertius originating on the fibula and inserting on the metatarsals." [Wikipedia:Fibularis_muscles] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fibularis" EXACT [] synonym: "fibularis muscle" EXACT [] @@ -298130,6 +309271,8 @@ id: UBERON:0009133 name: pleuroperitoneal membrane alt_id: UBERON:0009146 def: "A fold of tissue which extends into the peritoneal cavity of the developing embryo and participates in the separation of the pleural and peritoneal cavities." [http://medical-dictionary.thefreedictionary.com/pleuroperitoneal+membrane, Wikipedia:Pleuroperitoneal] +subset: human_subset +subset: mouse_subset synonym: "pleuroperitoneal fold" EXACT [VHOG:0000757] synonym: "pleuroperitoneal membranes" EXACT OMO:0003004 [EHDAA2:0001483] xref: EHDAA2:0001483 @@ -298149,6 +309292,8 @@ property_value: homology_notes "In hagfishes a transverse septum extends upward [Term] id: UBERON:0009138 name: right common cardinal vein +subset: human_subset +subset: mouse_subset synonym: "common cardinal vein right" EXACT [EHDAA2:0004535] xref: EHDAA2:0004535 xref: FMA:70310 @@ -298162,6 +309307,8 @@ id: UBERON:0009139 name: right posterior cardinal vein alt_id: UBERON:0013123 def: "A posterior cardinal vein that is in_the_right_side_of a multicellular organism." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "posterior cardinal vein right" EXACT [EHDAA2:0004536] synonym: "right postcardinal vein" EXACT [FMA:70315] xref: EHDAA2:0004536 @@ -298178,6 +309325,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0009140 name: right subcardinal vein def: "A subcardinal vein that is in_the_right_side_of a multicellular organism." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "subcardinal vein right" EXACT [EHDAA2:0004538] xref: EHDAA2:0004538 xref: SCTID:361452009 @@ -298192,6 +309341,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0009141 name: craniocervical region vein def: "A vein that is part of a craniocervical region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "craniocervical vein" EXACT [] synonym: "head and neck veins" EXACT [EHDAA2:0004542] synonym: "vein of head and neck" EXACT [] @@ -298208,6 +309359,8 @@ id: UBERON:0009142 name: entire embryonic mesenchyme alt_id: UBERON:0003313 def: "Sum total of mesenchyme in the embryo." [https://github.com/obophenotype/human-developmental-anatomy-ontology/issues/7] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001113 xref: EHDAA:177 xref: EMAPA:16097 @@ -298228,6 +309381,8 @@ consider: UBERON:0001043 [Term] id: UBERON:0009145 name: pharyngeal region of foregut +subset: human_subset +subset: mouse_subset synonym: "pharyngeal region" EXACT [EMAPA:16549] xref: EMAPA:16549 xref: RETIRED_EHDAA2:0001454 @@ -298238,6 +309393,8 @@ relationship: part_of UBERON:0001041 {source="EHDAA2"} ! foregut id: UBERON:0009149 name: foramen primum def: "Opening in the septum primum between the two atria of the embryonic heart[TMD]." [http://medical-dictionary.thefreedictionary.com/foramen+primum, Wikipedia:Primary_interatrial_foramen] +subset: human_subset +subset: mouse_subset synonym: "interatrial foramen primum" EXACT [Wikipedia:Primary_interatrial_foramen] synonym: "ostium primum" EXACT [http://medical-dictionary.thefreedictionary.com/foramen+primum] synonym: "primary interatrial foramen" EXACT [Wikipedia:Primary_interatrial_foramen] @@ -298260,6 +309417,8 @@ property_value: homology_notes "The tetrapod clade develops a complete atrial se id: UBERON:0009191 name: sphenoid bone pre-cartilage condensation def: "A sphenoid endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0003446 xref: EMAPA:18015 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure @@ -298277,6 +309436,8 @@ relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium [Term] id: UBERON:0009192 name: basisphenoid pre-cartilage condensation +subset: human_subset +subset: mouse_subset synonym: "basi-sphenoid pre-cartilage condensation" EXACT [EHDAA2:0003447] xref: EHDAA2:0003447 xref: EMAPA:18013 @@ -298291,6 +309452,8 @@ relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium id: UBERON:0009193 name: sphenoid cartilage element def: "A sphenoid endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "sphenoid bone cartilage condensation" EXACT [EHDAA2:0001888] xref: EHDAA2:0001888 is_a: UBERON:0003932 ! cartilage element of chondrocranium @@ -298307,6 +309470,8 @@ relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium [Term] id: UBERON:0009194 name: basisphenoid cartilage condenstion +subset: human_subset +subset: mouse_subset synonym: "basisphenoid cartilage condensation" EXACT [VHOG:0001338] xref: EHDAA2:0000166 xref: EMAPA:18338 @@ -298323,6 +309488,8 @@ id: UBERON:0009195 name: anal membrane def: "The dorsal part of the cloacal membrane following its partition by the urorectal septum." [ncithesaurus:Anal_Membrane] comment: During the 7th week the urorectal septum divides the cloacal membrane into a urogenital membrane (ventrally) and an anal membrane (dorsally) [http://www.embryology.ch/anglais/ugenital/genitexterne01.html] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004018 xref: NCIT:C34105 xref: SCTID:344130000 @@ -298334,6 +309501,8 @@ relationship: part_of UBERON:0001353 {source="EHDAA2"} ! anal region [Term] id: UBERON:0009196 name: indifferent external genitalia +subset: human_subset +subset: mouse_subset subset: organ_slim xref: EHDAA2:0004021 is_a: UBERON:0004176 {source="cjm"} ! external genitalia @@ -298343,6 +309512,8 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:0009197 name: basioccipital pre-cartilage condensation def: "A basioccipital endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000165 xref: EHDAA:6033 xref: EMAPA:18012 @@ -298360,6 +309531,8 @@ relationship: part_of UBERON:0002241 {source="EMAPA"} ! chondrocranium id: UBERON:0009198 name: craniofacial suture def: "Any suture between cranial and/or facial bones." [GO:0097094] +subset: human_subset +subset: mouse_subset synonym: "articulation of skull bones" RELATED [OBOL:automatic] synonym: "joint of the skull bones" EXACT [OBOL:automatic] is_a: UBERON:0002209 ! fibrous joint @@ -298373,6 +309546,8 @@ property_value: editor_note "we follow GO in dividing sutures into cranial and f id: UBERON:0009199 name: facial suture def: "Any suture between facial bones." [GO:0097096] +subset: human_subset +subset: mouse_subset is_a: UBERON:0009198 ! craniofacial suture is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0009198 ! craniofacial suture @@ -298384,6 +309559,8 @@ relationship: part_of UBERON:0011156 ! facial skeleton id: UBERON:0009200 name: limb epidermis def: "The limb epidermis is the outer epithelial layer of the limb, it is a complex stratified squamous epithelium." [GOC:dph, GOC:sdb_2009, GOC:tb] +subset: human_subset +subset: mouse_subset xref: EMAPA:32728 is_a: UBERON:0001003 ! skin epidermis is_a: UBERON:3000981 ! limb external integument structure @@ -298396,6 +309573,8 @@ id: UBERON:0009201 name: nephric duct def: "A nephric duct is a tube that drains a primitive kidney[GO]." [GO:0072176] comment: pronephric duct or mesonephric duct +subset: human_subset +subset: mouse_subset xref: EMAPA:16577 xref: Wikipedia:Wolffian_duct is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube @@ -298408,11 +309587,12 @@ relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0009202 -name: vasa recta descending limb +name: descending vasa recta subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: KUPO:0001002 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta parallel to the descending limb" xsd:string {external_ontology="CL"} @@ -298421,6 +309601,8 @@ property_value: external_ontology_notes "This class was created in order to alig id: UBERON:0009203 name: internasal suture def: "A suture joining the nasal bones." [Wikipedia:Internasal_suture] +subset: human_subset +subset: mouse_subset synonym: "inter-nasal suture" EXACT [] synonym: "internasal suture of skull" EXACT [FMA:52959] synonym: "nasal suture" BROAD [GO:0097097] @@ -298438,6 +309620,8 @@ relationship: connects UBERON:0001681 {notes="between both nasal bones"} ! nasal id: UBERON:0009204 name: medial nasal process mesenchyme def: "Mesenchyme that is part of a medial nasal prominence." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001077 xref: EMAPA:16810 xref: FMA:312659 @@ -298453,6 +309637,8 @@ relationship: part_of UBERON:0004068 {source="EHDAA2"} ! medial nasal prominence id: UBERON:0009205 name: lateral nasal process mesenchyme def: "Mesenchyme that is part of a lateral nasal prominence." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesenchyme of latero-nasal process" EXACT [EMAPA:16807] xref: EHDAA2:0000917 xref: EMAPA:16807 @@ -298467,6 +309653,8 @@ relationship: part_of UBERON:0004067 ! lateral nasal prominence id: UBERON:0009206 name: lateral nasal process surface ectoderm def: "An ectoderm that is part of a lateral nasal prominence." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ectoderm of latero-nasal process" EXACT [EMAPA:16806] xref: EHDAA2:0000918 xref: EMAPA:16806 @@ -298483,6 +309671,8 @@ relationship: part_of UBERON:0004067 ! lateral nasal prominence id: UBERON:0009207 name: geschmacksstreifen def: "Area on the rostral portion of the soft palate rich in tastebuds (Miller and Spangler 1982)." [PMID:19295142] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001716 ! secondary palate @@ -298492,6 +309682,8 @@ id: UBERON:0009210 name: pharyngeal membrane def: "A thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the pharyngeal clefts in a developing embryo." [http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html] comment: each membrane is initially composed of an inner layer formed by the endodermal lining of a branchial pouch and an outer layer formed by the ectodermal lining of the branchial groove; later, these two layers become separated by a thin layer of mesoderm; only the first branchial membrane contributes to the formation of an adult structure, i.e. the tympanic membrane (aka eardrum); the second, third, and fourth membranes are obliterated[MP] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "branchial arch membrane" EXACT [EMAPA:32749] synonym: "branchial membrane" EXACT [] @@ -298512,6 +309704,8 @@ property_value: homology_notes "In all vertebrates, the endodermal epithelium li id: UBERON:0009213 name: pharyngeal membrane of 1st arch def: "A pharyngeal membrane that separates the first pharyngeal cleft from the first pharyngeal pouch." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "1st branchial membrane" EXACT [EMAPA:16992] synonym: "1st pharyngeal membrane" EXACT [VHOG:0001427] synonym: "future tympanic membrane" EXACT [EMAPA:17281] @@ -298531,6 +309725,8 @@ property_value: editor_note "check EMAPA - 3 terms appear to match. We follow EM id: UBERON:0009215 name: pharyngeal membrane of 2nd arch def: "A pharyngeal membrane that separates the second pharyngeal cleft from the second pharyngeal pouch." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "2nd pharyngeal membrane" EXACT [VHOG:0000877] xref: EMAPA:16273 xref: VHOG:0000877 @@ -298544,6 +309740,8 @@ property_value: homology_notes "In all vertebrates, the endodermal epithelium li id: UBERON:0009216 name: pharyngeal membrane of 3rd arch def: "A pharyngeal membrane that separates the third pharyngeal cleft from the third pharyngeal pouch." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "3rd pharyngeal membrane" EXACT [VHOG:0000876] xref: EMAPA:16583 xref: VHOG:0000876 @@ -298557,6 +309755,8 @@ property_value: homology_notes "In all vertebrates, the endodermal epithelium li id: UBERON:0009217 name: pharyngeal membrane of 4th arch def: "A pharyngeal membrane that separates the fourth pharyngeal cleft from the fourth pharyngeal pouch." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "4th pharyngeal membrane" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:16763 is_a: UBERON:0009210 ! pharyngeal membrane @@ -298569,6 +309769,8 @@ id: UBERON:0009291 name: cartilaginous vertebral centrum def: "Cartilaginous form of a vertebral centrum, a skeletal element that functionally replaces the notochord[VSAP,modified]." [http://orcid.org/0000-0002-6601-2165, VSAO:0000183, VSAO:curator] comment: cartilaginous centrum of vertebra[PMID:11746457] +subset: human_subset +subset: mouse_subset synonym: "cartilaginous centrum of vertebra" EXACT [] synonym: "postcaudal cartilaginous centrum" NARROW [PMID:11746457] xref: SCTID:317278007 @@ -298582,6 +309784,8 @@ relationship: part_of UBERON:0011094 ! vertebra cartilage element [Term] id: UBERON:0009292 name: embryonic nasal process +subset: human_subset +subset: mouse_subset synonym: "nasal placode" RELATED [] xref: EHDAA2:0000581 xref: EHDAA:4776 @@ -298593,6 +309797,8 @@ property_value: external_ontology_notes "medial or lateral; in EHDAA2 also front [Term] id: UBERON:0009293 name: embryonic frontal process +subset: human_subset +subset: mouse_subset synonym: "frontal process" EXACT [VHOG:0001323] xref: EHDAA:4780 xref: EMAPA:16802 @@ -298606,16 +309812,21 @@ relationship: part_of UBERON:0004066 {source="EMAPA"} ! frontonasal prominence id: UBERON:0009468 name: basiotic bone def: "A small bone in the fetus between the basilar process and the basisphenoid." [http://medical-dictionary.thefreedictionary.com/basiotic+bone] +subset: human_subset +subset: mouse_subset synonym: "basiotic" EXACT [] xref: FMA:321631 xref: SCTID:95946002 is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:8450003 ! embryonic craniocervical region [Term] id: UBERON:0009470 name: postsphenoidal bone def: "The posterior portion of the sphenoid bone developed in five separate parts consisting of a central basisphenoid, the two alisphenoids, and the two medial pterygoid laminae." [http://www.merriam-webster.com/dictionary/postsphenoid, Wikipedia:Ossification_of_sphenoid#Postsphenoid] +subset: human_subset +subset: mouse_subset xref: FMA:321633 xref: SCTID:95950009 xref: Wikipedia:Ossification_of_sphenoid#Postsphenoid @@ -298628,6 +309839,8 @@ relationship: part_of UBERON:0001677 {source="cjm"} ! sphenoid bone id: UBERON:0009471 name: dorsum of tongue def: "The superior surface of the tongue divided by the sulcus terminalis into an anterior two-thirds, the presulcal part (pars presulcalis). and a posterior one-third, the postsulcal part (pars postsulcalis)." [http://www.drugs.com/dict/dorsum-of-tongue.html] +subset: human_subset +subset: mouse_subset synonym: "dorsal tongue" EXACT [FMA:54651] synonym: "dorsum linguae" EXACT [http://www.drugs.com/dict/dorsum-of-tongue.html] synonym: "tongue dorsum" EXACT [FMA:54651] @@ -298643,6 +309856,8 @@ id: UBERON:0009472 name: axilla def: "The axilla is the area directly under the joint where the forelimb connects to the shoulder." [Wikipedia:Axilla] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "arm pit" EXACT [Wikipedia:Axilla] synonym: "armpit" EXACT [Wikipedia:Axilla] @@ -298708,6 +309923,8 @@ id: UBERON:0009477 name: associated mesenchyme of otic placode def: "Mesenchyme that is part of a otic placode." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001340 xref: EMAPA:16196 is_a: UBERON:0007213 ! mesenchyme derived from head neural crest @@ -298721,6 +309938,8 @@ id: UBERON:0009478 name: associated mesenchyme of midgut def: "Mesenchyme that is part of a developing midgut." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset synonym: "early midgut associated mesenchyme" EXACT [EHDAA2:0001186] xref: EHDAA2:0001186 xref: EMAPA:16256 @@ -298735,6 +309954,8 @@ id: UBERON:0009479 name: ectoderm of buccopharyngeal membrane def: "An ectoderm that is part of a buccopharyngeal membrane." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000190 xref: EMAPA:16260 is_a: UBERON:0000924 ! ectoderm @@ -298747,6 +309968,8 @@ id: UBERON:0009480 name: endoderm of buccopharyngeal membrane def: "An endoderm that is part of a buccopharyngeal membrane." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000191 xref: EMAPA:16261 is_a: UBERON:0000925 ! endoderm @@ -298759,6 +309982,8 @@ id: UBERON:0009481 name: cavity of pericardio-peritoneal canal def: "A tube lumen that is part of a pericardio-peritoneal canal." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset synonym: "cavity of the pericardio-peritoneal canal" EXACT [VHOG:0000564] xref: EHDAA2:0001441 xref: EMAPA:16283 @@ -298773,6 +309998,8 @@ id: UBERON:0009482 name: associated mesenchyme of foregut-midgut junction def: "Mesenchyme that is part of a foregut-midgut junction." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000570 xref: EMAPA:16364 is_a: UBERON:0003104 ! mesenchyme @@ -298785,6 +310012,8 @@ id: UBERON:0009483 name: mesentery of foregut-midgut junction def: "A mesentery that is part of a foregut-midgut junction." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset synonym: "foregut-midgut junction mesentery" EXACT [VHOG:0000430] xref: EHDAA2:0000575 xref: EMAPA:16365 @@ -298799,6 +310028,8 @@ property_value: homology_notes "Although all vertebrates have a digestive tract id: UBERON:0009484 name: dorsal mesentery of mesentery of foregut-midgut junction subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000571 xref: EMAPA:16366 is_a: UBERON:0009483 ! mesentery of foregut-midgut junction @@ -298807,12 +310038,14 @@ is_a: UBERON:0009483 ! mesentery of foregut-midgut junction id: UBERON:0009494 name: pharyngeal arch mesenchymal region def: "A portion of mesenchymal tissue associated with an individual pharyngeal arch." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "branchial arch mesenchyme" EXACT [MP:0011262] synonym: "pharyngeal arch mesenchyme" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:32755 xref: FMA:295694 -is_a: UBERON:0005253 ! head mesenchyme +is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002539 ! pharyngeal arch @@ -298825,6 +310058,8 @@ property_value: editor_note "this represents a part of the entire arch mesenchym id: UBERON:0009495 name: extrahepatic part of biliary bud subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000172 xref: EMAPA:16562 is_a: UBERON:0005911 ! endo-epithelium @@ -298835,6 +310070,8 @@ relationship: develops_from UBERON:0004912 {source="EHDAA2"} ! biliary bud id: UBERON:0009496 name: intrahepatic part of biliary bud subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000173 xref: EMAPA:16563 is_a: UBERON:0005911 ! endo-epithelium @@ -298846,6 +310083,8 @@ id: UBERON:0009497 name: epithelium of foregut-midgut junction def: "An epithelium that is part of a foregut-midgut junction." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000573 xref: EMAPA:16564 is_a: UBERON:0000490 ! unilaminar epithelium @@ -298861,6 +310100,8 @@ relationship: part_of UBERON:0006235 ! foregut-midgut junction id: UBERON:0009499 name: parietal of mesothelium of pericardio-peritoneal canal subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001409 xref: EMAPA:16590 is_a: UBERON:0007185 ! pericardio-peritoneal canal mesothelium @@ -298871,6 +310112,8 @@ id: UBERON:0009500 name: periotic mesenchyme def: "Anatomical region that surrounds the otic vesicle." [PMID:3794595, XAO:0004474, XAO:curators] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset synonym: "otocyst associated mesenchyme" EXACT [EHDAA2:0001343] synonym: "otocyst mesenchyme" EXACT [EMAPA:16670] synonym: "periotic region" RELATED [XAO:0004474] @@ -298889,6 +310132,8 @@ id: UBERON:0009501 name: mesenchyme of fronto-nasal process def: "The embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the frontonasal region of the head." [MP:0011266] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "frontonasal mesenchyme" EXACT [MP:0011266] synonym: "naso-frontal mesenchyme" EXACT [MP:0011266] @@ -298905,6 +310150,8 @@ relationship: part_of UBERON:0004066 ! frontonasal prominence id: UBERON:0009502 name: ventral mesentery of mesentery of foregut-midgut junction subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset xref: EMAPA:16714 xref: RETIRED_EHDAA2:0000576 is_a: UBERON:0009483 ! mesentery of foregut-midgut junction @@ -298914,6 +310161,8 @@ id: UBERON:0009503 name: mesenchyme of hindgut def: "Mesenchyme that is part of a developing hindgut." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset synonym: "hindgut associated mesenchyme" EXACT [EHDAA2:0000780] xref: EHDAA2:0000780 xref: EMAPA:16716 @@ -298927,6 +310176,8 @@ id: UBERON:0009504 name: mesenchyme of main bronchus def: "Mesenchyme that is part of a developing main bronchus." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset synonym: "main bronchus associated mesenchyme" EXACT [EHDAA2:0001045] synonym: "primary bronchus mesenchyme" RELATED [EMAPA:16850] synonym: "principal bronchus mesenchyme" RELATED [EMAPA:16850] @@ -298943,6 +310194,8 @@ id: UBERON:0009505 name: mesenchyme of trachea def: "Mesenchyme that is part of a developing trachea." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset synonym: "trachea associated mesenchyme" EXACT [EHDAA2:0002067] xref: EHDAA2:0002067 xref: EMAPA:16854 @@ -298958,6 +310211,8 @@ id: UBERON:0009506 name: mesenchyme of middle ear def: "Mesenchyme that is part of a developing middle ear." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset synonym: "middle ear associated mesenchyme" EXACT [EHDAA2:0001182] synonym: "otic mesenchyme" BROAD [] xref: EHDAA2:0001182 @@ -298976,6 +310231,8 @@ id: UBERON:0009521 name: anal membrane endodermal component def: "An endoderm that is part of a anal region." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004020 xref: EMAPA:17177 is_a: UBERON:0000490 ! unilaminar epithelium @@ -298991,6 +310248,8 @@ id: UBERON:0009522 name: lateral lingual swelling epithelium def: "An epithelium that is part of a lateral lingual swelling." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000913 xref: EMAPA:17190 xref: FMA:313717 @@ -299006,6 +310265,8 @@ id: UBERON:0009523 name: mesenchyme of handplate def: "Mesenchyme that is part of a handplate." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset synonym: "hand plate mesenchyme" EXACT [] synonym: "handplate mesenchyme" EXACT [EHDAA2:0000731] xref: EHDAA2:0000731 @@ -299023,6 +310284,8 @@ id: UBERON:0009526 name: maxillary process mesenchyme def: "Mesenchyme that is part of a maxillary prominence." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset synonym: "mesenchyme of maxillary process" EXACT [EMAPA:17361] synonym: "mesenchyme of maxillary prominence" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EHDAA2:0001071 @@ -299039,6 +310302,8 @@ id: UBERON:0009536 name: vascular element of left lung def: "A vascular plexus that is part of a left lung." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000963 xref: EMAPA:17660 is_a: UBERON:0000102 ! lung vasculature @@ -299052,6 +310317,8 @@ id: UBERON:0009537 name: vascular element of right lung def: "A vascular plexus that is part of a right lung." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001757 xref: EMAPA:17668 is_a: UBERON:0000102 ! lung vasculature @@ -299065,6 +310332,8 @@ id: UBERON:0009538 name: mesenchyme of sublingual gland primordium def: "Mesenchyme that is part of a sublingual gland primordium." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001937 xref: EMAPA:17754 is_a: UBERON:0003104 ! mesenchyme @@ -299079,6 +310348,8 @@ id: UBERON:0009539 name: mesenchyme of submandibular gland primordium def: "Mesenchyme that is part of a submandibular gland primordium." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset synonym: "submaxillary gland primordium mesenchyme" RELATED [EMAPA:17757] xref: EHDAA2:0001941 xref: EMAPA:17757 @@ -299094,6 +310365,8 @@ id: UBERON:0009548 name: hepatic sinusoid of left of lobe of liver def: "A hepatic sinusoid that is part of a left lobe of liver." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset synonym: "left lobe hepatic sinusoids" EXACT [VHOG:0000709] xref: EHDAA2:0001001 xref: EMAPA:18309 @@ -299109,6 +310382,8 @@ id: UBERON:0009549 name: hepatic sinusoid of right of lobe of liver def: "A hepatic sinusoid that is part of a right lobe of liver." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset synonym: "right lobe hepatic sinusoids" EXACT [VHOG:0000710] xref: EHDAA2:0001009 xref: EMAPA:18316 @@ -299124,6 +310399,8 @@ id: UBERON:0009550 name: endoderm of foregut-midgut junction def: "An endoderm that is part of a foregut-midgut junction." [OBOL:automatic] subset: emapa_ehdaa2 +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000572 xref: EMAPA:18403 is_a: UBERON:0000925 ! endoderm @@ -299135,6 +310412,8 @@ relationship: part_of UBERON:0006235 ! foregut-midgut junction id: UBERON:0009551 name: distal segment of digit def: "A segment of a digit containing the distal phalanx, and overlapping the distal interphalangeal joint[CJM]. The digit tip is derived from multiple and distinct embryonic origins, and includes the distal bone with associated marrow cavity and haematopoietic cells, ventral (flexor) and dorsal (extensor) tendons, sweat glands with myoepithelial and luminal secreting cells and associated neurons for innervation, dermis with resident melanocytes and dendritic cells, mesenchyme with resident fibroblasts, skin epidermis with hair follicles, a nail organ composed of six specific parts (the root, nail bed, nail plate, eponychium (cuticle), perionychium and hyponychium)." [DOI:10.1038/nature10346] +subset: human_subset +subset: mouse_subset synonym: "digit tip" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "distal digit segment" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "tip of digit" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -299153,6 +310432,8 @@ id: UBERON:0009552 name: distal segment of manual digit alt_id: UBERON:0004093 def: "A segment of the manual digit containing the distal phalanx." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "finger digit tip" EXACT [DOI:10.1038/nature10346] synonym: "finger distal segment" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -299171,6 +310452,8 @@ relationship: part_of UBERON:0002389 ! manual digit id: UBERON:0009553 name: distal segment of pedal digit def: "A segment of the pedal digit containing the distal phalanx. Note this class represents a digit segment and thus includes tissues in addition to bone." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "distalmost part of toe" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "hindlimb digit tip" EXACT [DOI:10.1038/nature10346] synonym: "P3 segment of pedal digit" RELATED [https://orcid.org/0000-0002-6601-2165] @@ -299195,6 +310478,8 @@ replaced_by: UBERON:0014485 id: UBERON:0009555 name: short pastern bone def: "The middle phalanx of digit 3 in a horse." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Pastern] +subset: human_subset +subset: mouse_subset synonym: "equine middle phalanx" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "equine phalanx 2" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "equine phalanx 2 of digit III" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -299208,6 +310493,8 @@ property_value: editor_note "in future this may be merged into a species-neutral id: UBERON:0009556 name: long pastern bone def: "The proximal phalanx of digit 3 in a horse." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Pastern] +subset: human_subset +subset: mouse_subset synonym: "equine phalanx 1 of digit III" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "equine proximal phalanx" EXACT [https://orcid.org/0000-0002-6601-2165] xref: SCTID:370733005 @@ -299226,6 +310513,8 @@ replaced_by: UBERON:0009768 id: UBERON:0009558 name: pastern bone def: "A bone that is part of the pastern region of a horse limb. i.e. proximal or middle (P1 or P2) phalanges in digit 3." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Pastern] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Pastern is_a: UBERON:0003221 ! phalanx intersection_of: UBERON:0003221 ! phalanx @@ -299238,6 +310527,8 @@ property_value: editor_note "in future this may be merged into a more species-ne id: UBERON:0009559 name: metacarpal/tarsal-phalangeal joint def: "A skeletal joint that connects a mesopodium bone and connects a proximal phalanx." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fetlock" NARROW SENSU [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788, Wikipedia:Fetlock] synonym: "metacarpo-tarsophalangeal joint" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "metapodial-phalangeal joint" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -299257,6 +310548,8 @@ property_value: editor_note "We include these joints as being part of the digits id: UBERON:0009563 name: pastern region of limb def: "A part of the leg of a horse between the fetlock and the top of the hoof. It incorporates the long pastern bone (proximal phalanx) and the short pastern bone (middle phalanx), which are held together by two sets of paired ligaments to form the pastern joint (proximal interphalangeal joint)." [Wikipedia:Pastern] +subset: human_subset +subset: mouse_subset xref: SCTID:370725009 xref: Wikipedia:Pastern is_a: UBERON:0002529 ! limb segment @@ -299267,6 +310560,8 @@ property_value: editor_note "in future this may be merged into a more species-ne id: UBERON:0009564 name: distal limb integumentary appendage def: "A nail, hoof or claw." [PMID:11710767] +subset: human_subset +subset: mouse_subset synonym: "hoof or claw" RELATED [] synonym: "hoof, claw or nail" RELATED [] synonym: "keratin plate" RELATED [] @@ -299283,6 +310578,8 @@ relationship: part_of UBERON:0009551 {source="cjm"} ! distal segment of digit id: UBERON:0009565 name: nail of manual digit def: "A nail that is part of a manual digit." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "claw of hand" NARROW SENSU [] synonym: "claw of manus" NARROW SENSU [] @@ -299308,6 +310605,8 @@ relationship: part_of UBERON:0009552 {source="https://github.com/obophenotype/ub id: UBERON:0009566 name: intestinal submucosa def: "A submucosa that is part of a intestine." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "submucosa of intestine" EXACT [FMA:15696] xref: FMA:15696 is_a: UBERON:0018257 ! submucosa of digestive tract @@ -299320,6 +310619,8 @@ relationship: part_of UBERON:0001262 {source="FMA"} ! wall of intestine id: UBERON:0009567 name: nail of pedal digit def: "A nail that is part of a pedal digit." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "claw of foot" NARROW SENSU [] synonym: "claw of pes" NARROW SENSU [] @@ -299349,6 +310650,8 @@ relationship: part_of UBERON:0009553 {source="https://github.com/obophenotype/ub id: UBERON:0009568 name: trunk region of vertebral column def: "Subdivision of vertebral column that corresponds to the trunk of the body, containing the trunk/presacral vertebrae. In organisms that have a thoracic and lumbar distinction, this corresponds to the sum of both of these regions." [UBERONREF:0000006] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "presacral region" RELATED [AAO:0000612] synonym: "thoracolumbar column" EXACT [] @@ -299375,6 +310678,8 @@ property_value: external_definition "Region of the vertebral column between the [Term] id: UBERON:0009569 name: subdivision of trunk +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "region of trunk" EXACT [FMA:25054] synonym: "trunk subdivision" EXACT [FMA:25054] @@ -299387,6 +310692,8 @@ relationship: part_of UBERON:0002100 ! trunk id: UBERON:0009570 name: spinal cord sulcus limitans def: "A sulcus limitans of neural tube that is part of a future spinal cord." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "spinal cord lateral wall sulcus limitans" EXACT [EHDAA2:0001265] xref: EHDAA2:0001265 xref: EMAPA:17584 @@ -299400,6 +310707,8 @@ relationship: part_of UBERON:0006241 ! future spinal cord id: UBERON:0009571 name: ventral midline def: "In protostomes (such as insects, snails and worms) as well as deuterostomes (vertebrates), the midline is an embryonic region that functions in patterning of the adjacent nervous tissue. The ventral midline in insects is a cell population extending along the ventral surface of the embryo and is the region from which cells detach to form the ventrally located nerve cords. In vertebrates, the midline is originally located dorsally. During development, it folds inwards and becomes the ventral part of the dorsally located neural tube and is then called the ventral midline, or floor plate." [GOC:bf, GOC:go_curators, PMID:12075342] +subset: human_subset +subset: mouse_subset xref: FBbt:00000093 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 {source="FMA"} ! embryonic structure relationship: in_taxon NCBITaxon:33213 ! Bilateria @@ -299409,6 +310718,8 @@ relationship: part_of UBERON:0001016 ! nervous system id: UBERON:0009572 name: lumen of central canal of spinal cord def: "A cerebrospinal fluid-filled space that runs longitudinally through the length of the entire spinal cord. The central canal is contiguous with the ventricular system of the brain. The central canal represents the adult remainder of the neural tube." [Wikipedia:Central_canal] +subset: human_subset +subset: mouse_subset synonym: "cavity of central canal of spinal cord" EXACT [FMA:242845] synonym: "central canal lumen" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "neural lumen" RELATED [] @@ -299430,6 +310741,8 @@ relationship: transformation_of UBERON:0003842 ! neural tube lumen id: UBERON:0009573 name: sulcus limitans of fourth ventricle def: "In the floor of the fourth ventricle, the sulcus limitans separates the cranial nerve motor nuclei (medial) from the sensory nuclei (lateral). In the superior part of the rhomboid fossa, it corresponds with the lateral limit of the fossa and presents a bluish-gray area, the locus ceruleus (which owes its color to an underlying patch of deeply pigmented nerve cells, termed the substantia ferruginea). [WP]." [Wikipedia:Sulcus_limitans] +subset: human_subset +subset: mouse_subset synonym: "s. limitans fossae rhomboideae" RELATED OMO:0003011 [Wikipedia:Sulcus_limitans] synonym: "sulcus limitans" BROAD [FMA:78496] xref: BAMS:slim @@ -299448,6 +310761,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gr id: UBERON:0009576 name: medulla oblongata sulcus limitans def: "A sulcus limitans of neural tube that is part of a future medulla oblongata." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001100 xref: EMAPA:17561 is_a: UBERON:0005478 ! sulcus limitans of neural tube @@ -299460,6 +310775,8 @@ relationship: part_of UBERON:0001896 ! medulla oblongata id: UBERON:0009577 name: metencephalon sulcus limitans def: "A sulcus limitans of neural tube that is part of a future metencephalon." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001161 xref: EMAPA:17567 is_a: UBERON:0005478 ! sulcus limitans of neural tube @@ -299471,6 +310788,8 @@ relationship: part_of UBERON:0010092 ! future metencephalon id: UBERON:0009578 name: myelencephalon sulcus limitans def: "A sulcus limitans of neural tube that is part of a future myelencephalon." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001945 is_a: UBERON:0005478 ! sulcus limitans of neural tube intersection_of: UBERON:0005478 ! sulcus limitans of neural tube @@ -299480,6 +310799,8 @@ relationship: part_of UBERON:0010096 ! future myelencephalon [Term] id: UBERON:0009579 name: myelencephalon basal plate +subset: human_subset +subset: mouse_subset synonym: "basal plate myelencephalon" EXACT [VHOG:0000322] synonym: "future myelencephalon basal plate" EXACT [EHDAA2:0000646] xref: EHDAA2:0000646 @@ -299492,6 +310813,8 @@ property_value: external_definition "The ventral half of the developing neural t [Term] id: UBERON:0009580 name: diencephalon mantle layer +subset: human_subset +subset: mouse_subset synonym: "diencephalon lateral wall mantle layer" EXACT [] synonym: "mantle layer lateral wall diencephalon" EXACT [VHOG:0000912] xref: EHDAA2:0000397 @@ -299505,6 +310828,8 @@ relationship: part_of UBERON:0006222 ! future diencephalon [Term] id: UBERON:0009581 name: midbrain mantle layer +subset: human_subset +subset: mouse_subset synonym: "mantle layer lateral wall mesencephalon" RELATED [VHOG:0000910] synonym: "mantle layer lateral wall midbrain" EXACT [VHOG:0000910] synonym: "midbrain lateral wall mantle layer" EXACT [] @@ -299520,6 +310845,8 @@ relationship: part_of UBERON:0009616 ! presumptive midbrain id: UBERON:0009582 name: spinal cord lateral wall subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "lateral wall spinal cord" EXACT [ZFA:0000996] xref: EFO:0003602 xref: EMAPA:17579 @@ -299532,6 +310859,8 @@ relationship: part_of UBERON:0002240 {source="EMAPA"} ! spinal cord [Term] id: UBERON:0009583 name: spinal cord mantle layer +subset: human_subset +subset: mouse_subset synonym: "mantle layer lateral wall spinal cord" EXACT [VHOG:0000911] synonym: "spinal cord lateral wall mantle layer" EXACT [] xref: EMAPA:17580 @@ -299546,6 +310875,8 @@ id: UBERON:0009584 name: 1st arch mandibular mesenchyme alt_id: UBERON:0010043 def: "Mesenchyme that is part of a 1st arch mandibular component." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mandibular component mesenchyme" RELATED [] synonym: "mandibular mesenchyme" RELATED [] synonym: "mesenchymal region of mandibular component of first pharyngeal arch" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -299562,6 +310893,8 @@ id: UBERON:0009585 name: interdigital region mesenchyme def: "Mesenchyme that is part of a developing interdigital region." [OBOL:automatic] comment: influences identity of anterior digit[Dahn and Fallon 2000], likely via BMP4 +subset: human_subset +subset: mouse_subset synonym: "interdigit mesenchyme" RELATED [] synonym: "interdigital mesenchyme" EXACT [] synonym: "mesenchyme of interdigital region" EXACT [] @@ -299575,6 +310908,8 @@ relationship: part_of UBERON:0006012 ! interdigital region id: UBERON:0009586 name: mesenchyme of interdigital region between manual digits 1 and 2 def: "An interdigital region mesenchyme that is part of a interdigital region between manual digits 1 and 2." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interdigital region between fingers 1 and 2 mesenchyme" EXACT [EHDAA2:0000846] synonym: "mesenchyme of interdigital region between manual digits I and II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000846 @@ -299589,6 +310924,8 @@ relationship: part_of UBERON:0006026 {source="EMAPA"} ! interdigital region betw id: UBERON:0009587 name: mesenchyme of interdigital region between manual digits 2 and 3 def: "An interdigital region mesenchyme that is part of a interdigital region between manual digits 2 and 3." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interdigital region between fingers 2 and 3 mesenchyme" EXACT [EHDAA2:0000849] synonym: "mesenchyme of interdigital region between manual digits II and III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000849 @@ -299603,6 +310940,8 @@ relationship: part_of UBERON:0006029 {source="EMAPA"} ! interdigital region betw id: UBERON:0009588 name: mesenchyme of interdigital region between manual digits 3 and 4 def: "An interdigital region mesenchyme that is part of a interdigital region between manual digits 3 and 4." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interdigital region between fingers 3 and 4 mesenchyme" EXACT [EHDAA2:0000852] synonym: "mesenchyme of interdigital region between manual digits III and IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000852 @@ -299617,6 +310956,8 @@ relationship: part_of UBERON:0006032 {source="EMAPA"} ! interdigital region betw id: UBERON:0009589 name: mesenchyme of interdigital region between manual digits 4 and 5 def: "An interdigital region mesenchyme that is part of a interdigital region between manual digits 4 and 5." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interdigital region between fingers 4 and 5 mesenchyme" EXACT [EHDAA2:0000855] synonym: "mesenchyme of interdigital region between manual digits IV and V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000855 @@ -299631,6 +310972,8 @@ relationship: part_of UBERON:0006035 {source="EMAPA"} ! interdigital region betw id: UBERON:0009590 name: mesenchyme of interdigital region between pedal digits 1 and 2 def: "An interdigital region mesenchyme that is part of a interdigital region between pedal digits 1 and 2." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interdigital region between toes 1 and 2 mesenchyme" EXACT [EHDAA2:0000858] synonym: "mesenchyme of interdigital region between pedal digits I and II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000858 @@ -299645,6 +310988,8 @@ relationship: part_of UBERON:0006038 {source="EMAPA"} ! interdigital region betw id: UBERON:0009591 name: mesenchyme of interdigital region between pedal digits 2 and 3 def: "An interdigital region mesenchyme that is part of a interdigital region between pedal digits 2 and 3." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interdigital region between toes 2 and 3 mesenchyme" EXACT [EHDAA2:0000861] synonym: "mesenchyme of interdigital region between pedal digits II and III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000861 @@ -299659,6 +311004,8 @@ relationship: part_of UBERON:0006041 {source="EMAPA"} ! interdigital region betw id: UBERON:0009592 name: mesenchyme of interdigital region between pedal digits 3 and 4 def: "An interdigital region mesenchyme that is part of a interdigital region between pedal digits 3 and 4." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interdigital region between toes 3 and 4 mesenchyme" EXACT [EHDAA2:0000864] synonym: "mesenchyme of interdigital region between pedal digits III and IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000864 @@ -299673,6 +311020,8 @@ relationship: part_of UBERON:0006044 {source="EMAPA"} ! interdigital region betw id: UBERON:0009593 name: mesenchyme of interdigital region between pedal digits 4 and 5 def: "An interdigital region mesenchyme that is part of a interdigital region between pedal digits 4 and 5." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interdigital region between toes 4 and 5 mesenchyme" EXACT [EHDAA2:0000867] synonym: "mesenchyme of interdigital region between pedal digits IV and V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: EHDAA2:0000867 @@ -299687,6 +311036,8 @@ relationship: part_of UBERON:0006047 {source="EMAPA"} ! interdigital region betw id: UBERON:0009596 name: mesenchyme of interdigital region between digits 1 and 2 def: "An interdigital region mesenchyme that is part of a interdigital region between digits 1 and 2." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesenchyme of interdigital region between digits I and II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0009585 ! interdigital region mesenchyme intersection_of: UBERON:0009585 ! interdigital region mesenchyme @@ -299697,6 +311048,8 @@ relationship: part_of UBERON:0006016 ! interdigital region between digits 1 and id: UBERON:0009597 name: mesenchyme of interdigital region between digits 2 and 3 def: "An interdigital region mesenchyme that is part of a interdigital region between digits 2 and 3." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesenchyme of interdigital region between digits II and III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0009585 ! interdigital region mesenchyme intersection_of: UBERON:0009585 ! interdigital region mesenchyme @@ -299707,6 +311060,8 @@ relationship: part_of UBERON:0006019 ! interdigital region between digits 2 and id: UBERON:0009598 name: mesenchyme of interdigital region between digits 3 and 4 def: "An interdigital region mesenchyme that is part of a interdigital region between digits 3 and 4." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesenchyme of interdigital region between digits III and IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0009585 ! interdigital region mesenchyme intersection_of: UBERON:0009585 ! interdigital region mesenchyme @@ -299717,6 +311072,8 @@ relationship: part_of UBERON:0006022 ! interdigital region between digits 3 and id: UBERON:0009599 name: mesenchyme of interdigital region between digits 4 and 5 def: "An interdigital region mesenchyme that is part of a interdigital region between digits 4 and 5." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesenchyme of interdigital region between digits IV and V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] is_a: UBERON:0009585 ! interdigital region mesenchyme intersection_of: UBERON:0009585 ! interdigital region mesenchyme @@ -299727,6 +311084,8 @@ relationship: part_of UBERON:0006025 ! interdigital region between digits 4 and id: UBERON:0009600 name: mesenchyme of interdigital region of manus def: "An interdigital region mesenchyme that is part of a manus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesenchyme of interdigital region of forelimb" EXACT [] xref: EMAPA:32653 is_a: UBERON:0003859 ! forelimb mesenchyme @@ -299740,6 +311099,8 @@ relationship: part_of UBERON:0006013 {is_inferred="true", source="https://github id: UBERON:0009601 name: mesenchyme of interdigital region of pes def: "An interdigital region mesenchyme that is part of a pes." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesenchyme of interdigital region of hindlimb" EXACT [] xref: EMAPA:32955 is_a: UBERON:0003860 ! hindlimb mesenchyme @@ -299753,6 +311114,8 @@ relationship: part_of UBERON:0006014 {is_inferred="true", source="https://github id: UBERON:0009602 name: left lung associated mesenchyme def: "Mesenchyme that is part of a developing left lung." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left lung mesenchyme" EXACT [EMAPA:17654] xref: EHDAA2:0000944 xref: EMAPA:16730 @@ -299766,6 +311129,8 @@ relationship: part_of UBERON:0002168 ! left lung id: UBERON:0009603 name: right lung associated mesenchyme def: "Mesenchyme that is part of a developing right lung." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "right lung mesenchyme" EXACT [EMAPA:17662] xref: EHDAA2:0001739 xref: EMAPA:17662 @@ -299778,6 +311143,8 @@ relationship: part_of UBERON:0002167 ! right lung id: UBERON:0009610 name: forebrain neural plate def: "A neural plate that develops_from a future forebrain." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: TAO:0007018 xref: ZFA:0007018 is_a: UBERON:0003075 ! neural plate @@ -299790,6 +311157,8 @@ relationship: part_of UBERON:0003056 {source="ZFA"} ! pre-chordal neural plate id: UBERON:0009611 name: midbrain neural plate def: "A neural plate that develops_from a presumptive midbrain." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: TAO:0007019 xref: ZFA:0007019 is_a: UBERON:0003075 ! neural plate @@ -299801,6 +311170,8 @@ relationship: part_of UBERON:0003056 {source="ZFA"} ! pre-chordal neural plate [Term] id: UBERON:0009612 name: forebrain midbrain boundary neural plate +subset: human_subset +subset: mouse_subset synonym: "diencephalic-mesencephalic boundary neural plate" EXACT [ZFA:0007020] xref: TAO:0007020 xref: ZFA:0007020 @@ -299813,6 +311184,8 @@ relationship: part_of UBERON:0003056 {source="ZFA"} ! pre-chordal neural plate id: UBERON:0009614 name: hindbrain neural plate def: "A neural plate that develops_from a presumptive hindbrain." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: TAO:0007022 xref: ZFA:0007022 is_a: UBERON:0003075 ! neural plate @@ -299824,6 +311197,8 @@ relationship: part_of UBERON:0003057 {source="ZFA"} ! chordal neural plate [Term] id: UBERON:0009615 name: midbrain hindbrain boundary neural plate +subset: human_subset +subset: mouse_subset synonym: "MHB neural plate" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "midbrain-hindbrain boundary neural plate" EXACT [ZFA:0007044] xref: TAO:0007044 @@ -299839,6 +311214,8 @@ id: UBERON:0009616 name: presumptive midbrain def: "A presumptive structure that has the potential to develop into a midbrain." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "early midbrain" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "future midbrain" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "mesencephalon" RELATED [EHDAA2:0000615] @@ -299863,6 +311240,8 @@ property_value: editor_note "TODO - unify naming conventions" xsd:string id: UBERON:0009617 name: head paraxial mesoderm def: "Bilateral mesenchymal mesoderm parallel and immediately adjacent to the neural tube/notochord; it generates a subset of extra-ocular, and other head, muscles." [PMID:21610022] +subset: human_subset +subset: mouse_subset synonym: "cephalic paraxial mesenchyme" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "cephalic paraxial mesoderm" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "cranial paraxial mesenchyme" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -299881,6 +311260,8 @@ property_value: development_notes "A major contributor to neurocranium [PMID:163 [Term] id: UBERON:0009618 name: trunk paraxial mesoderm +subset: human_subset +subset: mouse_subset synonym: "trunk and cervical paraxial mesenchyme" EXACT [EHDAA2:0002094] synonym: "trunk paraxial mesenchyme" RELATED [https://github.com/obophenotype/uberon/issues/30] xref: EHDAA2:0002094 @@ -299891,6 +311272,8 @@ relationship: part_of UBERON:0005256 {source="EHDAA2"} ! trunk mesenchyme [Term] id: UBERON:0009620 name: tail bud paraxial mesoderm +subset: human_subset +subset: mouse_subset xref: EHDAA2:0003239 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue @@ -299902,6 +311285,7 @@ relationship: part_of UBERON:0003077 ! paraxial mesoderm id: UBERON:0009621 name: tail somite def: "A somite that is part of a tail." [OBOL:automatic] +subset: mouse_subset xref: AAO:0010383 xref: EMAPA:16860 xref: XAO:0003143 @@ -299914,6 +311298,8 @@ relationship: part_of UBERON:0002415 ! tail id: UBERON:0009622 name: pronephric proximal straight tubule def: "A proximal straight tubule that is part of a pronephros." [ZFIN:ZDB-PUB-071029-9] +subset: human_subset +subset: mouse_subset synonym: "proximal straight tubules" RELATED OMO:0003004 [TAO:0002239] xref: TAO:0002239 xref: ZFA:0001621 @@ -299930,6 +311316,8 @@ id: UBERON:0009623 name: spinal nerve root def: "The paired bundles of nerve fibers entering and leaving the spinal cord at each segment. The dorsal and ventral nerve roots join to form the mixed segmental spinal nerves. The dorsal roots are generally afferent, formed by the central projections of the spinal (dorsal root) ganglia sensory cells, and the ventral roots efferent, comprising the axons of spinal motor and autonomic preganglionic neurons. There are, however, some exceptions to this afferent/efferent rule." [MESH:A08.800.800.720.725] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "root of spinal nerve" EXACT [FMA:14060] synonym: "spinal neural root" EXACT [FMA:14060] synonym: "spinal root" EXACT [BTO:0000883] @@ -299958,6 +311346,8 @@ id: UBERON:0009624 name: lumbar nerve def: "The lumbar nerves are the five spinal nerves emerging from the lumbar vertebrae. They are divided into posterior and anterior divisions." [Wikipedia:Lumbar_nerves] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lumbar spinal nerve" EXACT [FMA:5861] synonym: "nervi lumbales" RELATED OMO:0003011 [Wikipedia:Lumbar_nerves] synonym: "nervus lumbalis" EXACT OMO:0003011 [FMA:5861, FMA:TA] @@ -299979,6 +311369,8 @@ id: UBERON:0009625 name: sacral nerve def: "The five sacral nerves emerge from the sacrum. Although the vertebral components of the sacrum are fused into a single bone, the sacral vertebrae are still used to number the sacral nerves. Posteriorly, they emerge from the posterior sacral foramina, and form the posterior branches of sacral nerves. Anteriorly, they emerge from the anterior sacral foramina, and contribute to the sacral plexus (S1-S4) and coccygeal plexus." [Wikipedia:Sacral_nerves] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "nervi sacrales" RELATED OMO:0003011 [Wikipedia:Sacral_nerves] synonym: "nervus sacralis" EXACT OMO:0003011 [FMA:5862, FMA:TA] synonym: "sacral spinal nerve" EXACT [FMA:5862] @@ -299999,6 +311391,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gr id: UBERON:0009629 name: coccygeal nerve def: "The coccygeal nerve is the spinal nerve that corresponds to the coccyx bone." [Wikipedia:Coccygeal_nerve] +subset: human_subset +subset: mouse_subset synonym: "coccygeal spinal nerve" EXACT [FMA:5863] synonym: "nervus coccygeus" RELATED OMO:0003011 [Wikipedia:Coccygeal_nerve] xref: FMA:5863 @@ -300017,6 +311411,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gr id: UBERON:0009630 name: root of thoracic nerve def: "A spinal nerve root that is part of a thoracic nerve." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "nerve root part of thoracic spinal cord" EXACT [NIF:NIF] synonym: "thoracic nerve root" EXACT [FMA:14064] synonym: "thoracic neural root" EXACT [FMA:14064] @@ -300031,6 +311427,8 @@ relationship: extends_fibers_into UBERON:0003726 ! thoracic nerve id: UBERON:0009631 name: root of lumbar spinal nerve def: "A spinal nerve root that is part of a lumbar nerve." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lumbar spinal nerve root" EXACT [FMA:16421] synonym: "lumbar spinal neural root" EXACT [FMA:16421] synonym: "nerve root part of lumbar spinal cord" EXACT [NIF:NIF] @@ -300047,6 +311445,8 @@ relationship: extends_fibers_into UBERON:0009624 ! lumbar nerve [Term] id: UBERON:0009632 name: root of cervical nerve +subset: human_subset +subset: mouse_subset synonym: "cervical neural root" EXACT [FMA:16422] synonym: "cervical spinal root" EXACT [FMA:16422] synonym: "nerve root part of cervical spinal cord" EXACT [NIF:NIF] @@ -300065,6 +311465,8 @@ relationship: extends_fibers_into UBERON:0000962 ! nerve of cervical vertebra id: UBERON:0009633 name: root of sacral nerve def: "A spinal nerve root that is part of a sacral nerve." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "nerve root part of sacral spinal cord" EXACT [NIF:NIF] synonym: "root of sacral spinal nerve" EXACT [FMA:18028] synonym: "sacral neural root" EXACT [FMA:18028] @@ -300083,6 +311485,8 @@ relationship: extends_fibers_into UBERON:0009625 ! sacral nerve id: UBERON:0009634 name: root of coccygeal nerve def: "A spinal nerve root that is part of a coccygeal nerve." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "coccygeal neural root" EXACT [FMA:18131] synonym: "coccygeal spinal nerve root" EXACT [FMA:18131] synonym: "root of coccygeal spinal nerve" EXACT [FMA:18131] @@ -300096,6 +311500,8 @@ relationship: extends_fibers_into UBERON:0009629 ! coccygeal nerve id: UBERON:0009635 name: parachordal cartilage def: "Chondrocranium chondrification center that fuses with cartilages derived from sclerotome region of occipital somites forming occipital bone, hypoglossal canals and foramen magnum." [https://orcid.org/0000-0002-6601-2165, ISBN:1588903958] +subset: human_subset +subset: mouse_subset synonym: "parachordal cartilages" EXACT OMO:0003004 [ZFA:0001423] xref: NCIT:C34243 xref: TAO:0001423 @@ -300111,11 +311517,15 @@ id: UBERON:0009636 name: prechordal cartilage def: "Chondrocranium chondrification center that that forms anterior body of sphenoid, containing the sella turcica and posterior body of sphenoid." [https://orcid.org/0000-0002-6601-2165, ISBN:1588903958] comment: classified as part of chondrocranium based on developmental relationships +subset: human_subset +subset: mouse_subset is_a: UBERON:0003932 ! cartilage element of chondrocranium [Term] id: UBERON:0009637 name: alisphenoid ossification center +subset: human_subset +subset: mouse_subset synonym: "alisphenoid center" RELATED [] is_a: UBERON:0010355 ! ossification center @@ -300123,6 +311533,8 @@ is_a: UBERON:0010355 ! ossification center id: UBERON:0009638 name: orbitosphenoid ossification center comment: merge with sphenoid lesser wing cartilage element? +subset: human_subset +subset: mouse_subset synonym: "orbitosphenoid center" RELATED [] is_a: UBERON:0010355 ! ossification center @@ -300130,6 +311542,8 @@ is_a: UBERON:0010355 ! ossification center id: UBERON:0009639 name: body of sphenoid def: "The body of the sphenoid bone, more or less cubical in shape, is hollowed out in its interior to form two large cavities, the sphenoidal air sinuses, which are separated from each other by a septum." [Wikipedia:Body_of_sphenoid_bone] +subset: human_subset +subset: mouse_subset synonym: "body of sphenoidal bone" EXACT [FMA:52867] synonym: "central body of sphenoid" EXACT [FMA:52867] synonym: "corpus (os sphenoidale)" EXACT [FMA:52867] @@ -300154,12 +311568,16 @@ id: UBERON:0009640 name: hypophyseal cartilage def: "Forms around the developing pituitary, and together with prechordal cartilages creates body of sphenoid bone." [ISBN:1588903958] comment: classified as part of chondrocranium based on developmental relationships +subset: human_subset +subset: mouse_subset is_a: UBERON:0003932 ! cartilage element of chondrocranium [Term] id: UBERON:0009641 name: ansa lenticularis def: "The ansa lenticularis (ansa lentiformis in older texts) is a part of the brain, making up the superior layer of the substantia innominata of Meynert. Its fibers, derived from the medullary lamina of the lentiform nucleus, pass medially to end in the thalamus and subthalamic region, while others are said to end in the tegmentum and red nucleus. It is classified by NeuroNames as part of the subthalamus." [Wikipedia:Ansa_lenticularis] +subset: human_subset +subset: mouse_subset synonym: "ansa lenticularis in thalamo" EXACT OMO:0003011 [FMA:TA] synonym: "ansa lenticularis in thalamus" EXACT [FMA:62070] synonym: "ventral peduncle of lateral forebrain bundle" EXACT [FMA:62070] @@ -300179,6 +311597,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/94/DA id: UBERON:0009643 name: central tegmental tract def: "A pathway containing fibers from midbrain nuclei that project to the inferior olivary complex, as well as fibers originating in the pontine reticular formation and the medullary reticular formation that project to several nuclei of the thalamus. It can be identified in the midbrain and the pons (Adapted from Brain Info)." [NLXANAT:1010012] +subset: human_subset +subset: mouse_subset xref: BAMS:ctg xref: DHBA:12730 xref: FMA:83850 @@ -300197,6 +311617,8 @@ property_value: external_definition "The central tegmental tract is a structure id: UBERON:0009644 name: trachea non-cartilage connective tissue subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:35878 xref: MA:0001859 is_a: UBERON:0003571 {source="MA"} ! trachea connective tissue @@ -300206,6 +311628,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0009645 name: ampullary gland def: "A paired accessory, glandular, androgen-dependent outpouchings of the proximal ductus deferens, one on each side, that produce and secrete lipids and glycogen, components of the seminal fluid; they open into the ampullae at the level of the colliculus seminalis, are lined by simple columnar epithelium with large, oval nuclei, and may be distinguished from those of the prostate as they are surrounded by a characteristic, dense, fibromuscular stroma." [MP:0013323] +subset: mouse_subset subset: pheno_slim synonym: "ampulla of the vas" EXACT [] synonym: "ampullae of the vas" EXACT OMO:0003004 [] @@ -300226,6 +311649,8 @@ property_value: taxon_notes "there is no known human counterpart to the ampullar id: UBERON:0009646 name: lumbar sympathetic nerve trunk def: "A sympathetic nerve trunk that is part of a lower back." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lumbar part of sympathetic trunk" RELATED [FMA:6263] synonym: "lumbar sympathetic chain" RELATED [FMA:6263] synonym: "lumbar sympathetic trunk" EXACT [FMA:6263] @@ -300244,6 +311669,8 @@ relationship: part_of UBERON:0005462 ! lower back id: UBERON:0009647 name: tympanic membrane epithelium def: "One of the two epithelia which make up the tympanic membrane (along with the fibrous layer)." [https://orcid.org/0000-0002-6601-2165, PMID:11237469] +subset: human_subset +subset: mouse_subset synonym: "tympanic epithelium" EXACT [MA:0001224] synonym: "tympanic membrane epithelial layer" EXACT [] xref: EMAPA:19064 @@ -300262,6 +311689,8 @@ relationship: part_of UBERON:0002364 ! tympanic membrane id: UBERON:0009648 name: eyelid subcutaneous connective tissue def: "An eyelid connective tissue that is part of a hypodermis." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "superficial fascia of eyelid" RELATED [FMA:63975] xref: EMAPA:37533 {source="MA:th"} xref: FMA:63975 @@ -300279,6 +311708,8 @@ relationship: part_of UBERON:0002072 ! hypodermis id: UBERON:0009650 name: cortical arch of kidney def: "The portions of renal substance (cortex) intervening between the bases of the pyramids and the capsule of the kidney." [http://www.medilexicon.com/medicaldictionary.php?t=5968] +subset: human_subset +subset: mouse_subset synonym: "cortex proper of kidney" RELATED [FMA:17876] synonym: "cortical arches of kidney" RELATED OMO:0003004 [] synonym: "renal cortex proper" EXACT [FMA:17876] @@ -300295,6 +311726,8 @@ relationship: part_of UBERON:0002189 {source="MA"} ! outer cortex of kidney id: UBERON:0009651 name: nephron tubule basement membrane def: "A basement membrane that is part of a nephron tubule." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "kidney tubule basement membrane" EXACT [MA:0001680] synonym: "renal tubular basement membrane" EXACT [] synonym: "renal tubule basement membrane" EXACT [MA:0001680] @@ -300313,6 +311746,8 @@ relationship: part_of UBERON:0004810 {is_inferred="true", source="https://github id: UBERON:0009652 name: bronchus basement membrane def: "A basement membrane that is part of a bronchus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchial basement membrane" EXACT [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:37809 {source="MA:th"} xref: MA:0001832 @@ -300330,6 +311765,8 @@ property_value: external_ontology_notes "MA classifies as type of connective tis id: UBERON:0009653 name: trachea basement membrane def: "A basement membrane that is part of a trachea." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37552 {source="MA:th"} xref: MA:0001854 xref: NCIT:C49302 @@ -300347,6 +311784,8 @@ id: UBERON:0009654 name: alveolar artery def: "A branch of the maxillary artery that is found in the gingiva, premolars, and molars." [ncithesaurus:Alveolar_Artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:37069 {source="MA:th"} xref: MA:0001913 xref: NCIT:C52848 @@ -300362,6 +311801,8 @@ property_value: editor_note "add child terms" xsd:string id: UBERON:0009655 name: auricular artery def: "An artery that supplies oxygenated blood to the ear." [ncithesaurus:Auricular_Artery] +subset: human_subset +subset: mouse_subset xref: EMAPA:37072 {source="MA:th"} xref: MA:0001918 xref: NCIT:C52849 @@ -300383,6 +311824,8 @@ consider: MA:0001960 [Term] id: UBERON:0009657 name: artery of lip +subset: human_subset +subset: mouse_subset synonym: "labial artery" BROAD [MA:0001987] xref: EMAPA:37092 {source="MA:th"} xref: MA:0001987 @@ -300397,6 +311840,8 @@ relationship: supplies UBERON:0001833 ! lip [Term] id: UBERON:0009658 name: pancreaticoduodenal artery +subset: human_subset +subset: mouse_subset synonym: "arteriae pancreaticoduodenales" EXACT OMO:0003011 [] synonym: "pancreatico-duodenal artery" EXACT [MA:0002013] xref: EMAPA:36529 @@ -300410,6 +311855,8 @@ is_a: UBERON:0001637 {source="MA"} ! artery id: UBERON:0009659 name: spermatic artery def: "A branch of the abdominal aorta that supplies oxygenated blood to the testis." [ncithesaurus:Spermatic_Artery] +subset: human_subset +subset: mouse_subset xref: MA:0002040 xref: NCIT:C33581 xref: UMLS:C0226409 {source="ncithesaurus:Spermatic_Artery"} @@ -300427,6 +311874,8 @@ replaced_by: UBERON:0001146 id: UBERON:0009661 name: midbrain nucleus def: "Nucleus located in the midbrain." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: SCTID:279285003 xref: TAO:0002209 xref: ZFA:0001665 @@ -300439,6 +311888,8 @@ relationship: part_of UBERON:0001891 ! midbrain id: UBERON:0009662 name: hindbrain nucleus def: "Nucleus located within the hindbrain." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: TAO:0002177 xref: ZFA:0001658 is_a: UBERON:0002308 ! nucleus of brain @@ -300450,6 +311901,8 @@ relationship: part_of UBERON:0002028 ! hindbrain id: UBERON:0009663 name: telencephalic nucleus def: "A nucleus of brain that is part of a telencephalon." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: TAO:0002178 xref: ZFA:0001660 is_a: UBERON:0002308 ! nucleus of brain @@ -300460,6 +311913,8 @@ relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0009664 name: gut mesentery +subset: human_subset +subset: mouse_subset synonym: "peritoneal cavity mesentary" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "peritoneal mesentary" RELATED [http://orcid.org/0000-0002-6601-2165] xref: EHDAA2:0004566 @@ -300473,6 +311928,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/509" xsd: id: UBERON:0009668 name: ventral mesentery def: "Ventral mesentery is the part of the peritoneum closest to the navel." [Wikipedia:Ventral_mesentery] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004569 xref: SCTID:361430000 xref: Wikipedia:Ventral_mesentery @@ -300484,6 +311941,8 @@ property_value: development_notes "degenerates during development except foregut id: UBERON:0009669 name: embryonic cloacal lumen def: "An anatomical space that surrounded_by a embryonic cloaca." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004586 is_a: UBERON:0012463 ! cloacal lumen intersection_of: UBERON:0000464 ! anatomical space @@ -300496,6 +311955,8 @@ relationship: surrounded_by UBERON:0009846 ! embryonic cloacal epithelium id: UBERON:0009670 name: rectal lumen def: "An anatomical space that surrounded_by a rectum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lumen of rectum" EXACT [FMA:14598] xref: EHDAA2:0004587 xref: EMAPA:18388 @@ -300513,6 +311974,8 @@ relationship: part_of UBERON:0012465 {source="cjm"} ! lumen of terminal part of id: UBERON:0009671 name: nasal fin def: "The nasal fin is an epithelial seam that develops by fusion between the epithelial linings of the medial and lateral nasal swellings. Shortly after its formation the nasal fin regresses and is replaced by mesenchyme, with exception of its most posterior portion which remains as the bucconasal membrane." [DOI:10.1002/aja.1001500308] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004548 xref: FMA:295940 is_a: UBERON:0005384 ! nasal cavity epithelium @@ -300525,6 +311988,8 @@ relationship: part_of UBERON:0005384 {source="EHDAA2"} ! nasal cavity epithelium id: UBERON:0009672 name: oronasal membrane def: "The oronasal membrane separates the oral cavity and nasal cavity." [http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter24/custom3/deluxe-content.html] +subset: human_subset +subset: mouse_subset synonym: "bucconasal membrane" EXACT [EHDAA:7840] xref: EHDAA2:0000188 xref: EHDAA:7840 @@ -300544,6 +312009,8 @@ property_value: taxon_notes "In humans, the oronasal membrane ruptures during th id: UBERON:0009673 name: accessory XI nerve cranial component comment: Thus in contemporary discussions of the accessory nerve, the common practice is to dismiss the cranial part altogether, referring to the accessory nerve specifically as the spinal accessory nerve. +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000107 xref: EHDAA:5574 xref: EMAPA:17266 @@ -300560,6 +312027,8 @@ property_value: homology_notes "Cranial nerves XI and XII evolved in the common id: UBERON:0009674 name: accessory XI nerve spinal component def: "The spinal root of accessory nerve (or part) is firm in texture, and its fibers arise from the motor cells in the lateral part of the anterior column of the gray substance of the medulla spinalis as low as the fifth cervical nerve. Passing through the lateral funiculus of the medulla spinalis, they emerge on its surface and unite to form a single trunk, which ascends between the ligamentum denticulatum and the posterior roots of the spinal nerves; enters the skull through the foramen magnum, and is then directed to the jugular foramen, through which it passes, lying in the same sheath of dura mater as the vagus, but separated from it by a fold of the arachnoid. In the jugular foramen, it receives one or two filaments from the cranial part of the nerve, or else joins it for a short distance and then separates from it again. As its exit from the jugular foramen, it runs backward in front of the internal jugular vein in 66.6 per cent. of cases, and behind in it 33.3 per cent. The nerve then descends obliquely behind the Digastricus and Stylohyoideus to the upper part of the Sternocleidomastoideus; it pierces this muscle, and courses obliquely across the posterior triangle of the neck, to end in the deep surface of the Trapezius. As it traverses the Sternocleidomastoideus it gives several filaments to the muscle, and joins with branches from the second cervical nerve. In the posterior triangle it unites with the second and third cervical nerves, while beneath the Trapezius it forms a plexus with the third and fourth cervical nerves, and from this plexus fibers are distributed to the muscle." [Wikipedia:Spinal_root_of_accessory_nerve] +subset: human_subset +subset: mouse_subset synonym: "spinal part of the accessory nerve" EXACT [NeuroNames:1709] xref: EHDAA2:0000108 xref: EHDAA:5576 @@ -300578,6 +312047,8 @@ id: UBERON:0009675 name: chorda tympani branch of facial nerve def: "The chorda tympani is a nerve that branches from the facial nerve (cranial nerve VII) inside the facial canal, just before the facial nerve exits the skull via the stylomastoid foramen. Chorda tympani is a branch of the facial nerve (the seventh cranial nerve) that serves the taste buds in the front of the tongue, runs through the middle ear, and carries taste messages to the brain. The chorda tympani is part of one of three cranial nerves that are involved in taste. The taste system involves a complicated feedback loop, with each nerve acting to inhibit the signals of other nerves. The chorda tympani appears to exert a particularly strong inhibitory influence on other taste nerves, as well as on pain fibers in the tongue. When the chorda tympani is damaged, its inhibitory function is disrupted, leading to less inhibited activity in the other nerves." [Wikipedia:Chorda_tympani] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "chorda tympani" EXACT [FMA:53228] synonym: "chorda tympani nerve" RELATED [Wikipedia:Chorda_tympani] synonym: "corda tympani nerve" RELATED [Wikipedia:Chorda_tympani] @@ -300605,6 +312076,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0009676 name: early telencephalic vesicle subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "early telencephalic ventricle" RELATED [] synonym: "early telencephalic vesicle" EXACT [EHDAA2:0001981] xref: EFO:0003562 @@ -300620,6 +312093,8 @@ relationship: part_of UBERON:0001893 {source="EHDAA2"} ! telencephalon id: UBERON:0009678 name: tooth row def: "Anatomical cluster consisting of adjacent teeth constituting a row." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "dental arcade" EXACT [FMA:59415] synonym: "row of teeth" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "tooth rows" EXACT OMO:0003004 [ZFA:0001642] @@ -300636,6 +312111,8 @@ relationship: has_member UBERON:0001091 ! calcareous tooth id: UBERON:0009679 name: set of lower jaw teeth def: "A tooth row that is part of a skeleton of lower jaw." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "arcus dentalis inferior" EXACT OMO:0003011 [FMA:TA] synonym: "lower dental arcade" EXACT [FMA:55635] @@ -300653,6 +312130,8 @@ relationship: part_of UBERON:0003278 ! skeleton of lower jaw id: UBERON:0009680 name: set of upper jaw teeth def: "A tooth row that is part of a skeleton of upper jaw." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "arcus dentalis superior" EXACT OMO:0003011 [FMA:TA] synonym: "maxillary dental arcade" RELATED [FMA:55634] @@ -300671,6 +312150,8 @@ id: UBERON:0009687 name: middle cardiac vein def: "The middle cardiac vein commences at the apex of the heart, ascends in the posterior longitudinal sulcus, and ends in the coronary sinus near its right extremity." [Wikipedia:Middle_cardiac_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lesser cardiac vein" EXACT [FMA:4713] synonym: "posterior interventricular vein" EXACT [FMA:4713] synonym: "vena cardiaca media" RELATED OMO:0003011 [Wikipedia:Middle_cardiac_vein] @@ -300691,6 +312172,8 @@ id: UBERON:0009688 name: posterior inferior cerebellar artery def: "The posterior inferior cerebellar artery (PICA), the largest branch of the vertebral, is one of the three main arterial blood supplies for the cerebellum." [Wikipedia:Posterior_inferior_cerebellar_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "posterior inferior cerebellar artery" EXACT [EHDAA2:0000660] xref: EHDAA2:0000660 xref: FMA:50518 @@ -300712,6 +312195,8 @@ id: UBERON:0009689 name: anterior inferior cerebellar artery def: "A basilar artery branch that supplies the anterior portion of the inferior surface of the cerebellum." [ncithesaurus:Anterior_Inferior_Cerebellar_Artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000587 xref: EMAPA:37070 {source="MA:th"} xref: FMA:50544 @@ -300729,6 +312214,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0009692 name: lumen of pharyngotympanic tube def: "An organ cavity that is part of a pharyngotympanic tube." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "auditory tube lumen" EXACT [EHDAA2:0004118] synonym: "lumen of auditory tube" EXACT [FMA:60079] synonym: "lumen of eustachian tube" EXACT [FMA:60079] @@ -300749,6 +312236,8 @@ property_value: editor_note "Check relationships for conformance with AAO and XA id: UBERON:0009695 name: epithelium of laryngopharynx def: "An epithelium that is part of a hypopharynx." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelium of laryngeal pharynx" EXACT [FMA:62454] synonym: "laryngopharynx epithelium" EXACT [FMA:62454] xref: EHDAA2:0004575 @@ -300764,6 +312253,8 @@ relationship: part_of UBERON:0003929 {source="EHDAA2"} ! digestive tract epithel id: UBERON:0009697 name: epithelium of appendix def: "An epithelium that is part of a vermiform appendix." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "appendix epithelium" EXACT [FMA:63581] synonym: "epithelium of vermiform appendix" EXACT [FMA:63581] xref: CALOHA:TS-2062 @@ -300781,6 +312272,8 @@ relationship: part_of UBERON:0004989 ! mucosa of appendix id: UBERON:0009708 name: dorsal pancreas subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "pancreatis dorsalis" RELATED [] xref: EHDAA2:0001371 @@ -300796,6 +312289,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0009709 name: ventral pancreas subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: organ_slim synonym: "pancreatis ventralis" RELATED [] xref: EHDAA2:0001393 @@ -300811,6 +312306,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0009712 name: endocardium of right ventricle def: "Any endocardium that is part of the right ventricle of the heart." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "endocardial lining of right ventricle" RELATED [EMAPA:17341] synonym: "right ventricle endocardial tissue" RELATED [VHOG:0001235] synonym: "right ventricle endocardium" EXACT [VHOG:0001235] @@ -300833,6 +312330,8 @@ property_value: external_definition "Endocardium of ventricle which is continuou id: UBERON:0009713 name: endocardium of left ventricle def: "Any endocardium that is part of the left ventricle of the heart." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "endocardial lining of left ventricle" RELATED [EMAPA:17338] synonym: "left ventricle endocardial tissue" RELATED [VHOG:0001233] synonym: "left ventricle endocardium" EXACT [VHOG:0001233] @@ -300853,6 +312352,8 @@ property_value: external_definition "Endocardium of ventricle which is continuou id: UBERON:0009714 name: intermaxillary process def: "The primordial mass of tissue formed by the merging of the medial nasal prominences of the embryo; it contributes to the intermaxillary portion of the upper jaw, the prolabial portion of the upper lip, and the primary palate." [http://www.medilexicon.com/medicaldictionary.php?s=intermaxillary+segment] +subset: human_subset +subset: mouse_subset synonym: "globular process" RELATED DEPRECATED [Wikipedia:Intermaxillary_segment] synonym: "globular processes of his" RELATED DEPRECATED [Wikipedia:Intermaxillary_segment] synonym: "intermaxillary segment" RELATED [Wikipedia:Intermaxillary_segment] @@ -300869,6 +312370,8 @@ property_value: editor_note "requires verification. Note EHDAA2 has this as comi id: UBERON:0009715 name: stomodeal lumen def: "An anatomical cavity that surrounded_by a stomodeum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lumen of stomatodaeum" EXACT [] synonym: "lumen of stomodeum" EXACT [] synonym: "stomatodeal cavity" EXACT [] @@ -300936,6 +312439,8 @@ relationship: in_taxon NCBITaxon:7712 ! Tunicata [Term] id: UBERON:0009722 name: entire pharyngeal arch endoderm +subset: human_subset +subset: mouse_subset synonym: "pharyngeal arch endoderm" RELATED [EHDAA2:0004621] xref: EHDAA2:0004621 xref: EMAPA:32754 @@ -300951,6 +312456,8 @@ relationship: part_of UBERON:0008814 ! pharyngeal arch system id: UBERON:0009731 name: sublaminar layers S3 or S4 def: "One of sublaminar layers S3 or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] +subset: human_subset +subset: mouse_subset xref: CP:0001040 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008924 ! sublaminar layer S3 @@ -300962,6 +312469,8 @@ property_value: dc:contributor https://github.com/tmeehan id: UBERON:0009732 name: sublaminar layers S1 or S2 or S5 def: "One of sublaminar layers S1, S2, or S5." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] +subset: human_subset +subset: mouse_subset xref: CP:0001041 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 @@ -300974,6 +312483,8 @@ property_value: dc:contributor https://github.com/tmeehan id: UBERON:0009733 name: sublaminar layers S1 or S2 or S3 def: "One of sublaminar layers S1, S2, or S3." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] +subset: human_subset +subset: mouse_subset xref: CP:0001042 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 @@ -300986,6 +312497,8 @@ property_value: dc:contributor https://github.com/tmeehan id: UBERON:0009734 name: sublaminar layers S2 or S3 or S4 def: "One of sublaminar layers S2, S3, or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] +subset: human_subset +subset: mouse_subset xref: CP:0001043 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008923 ! sublaminar layer S2 @@ -300998,6 +312511,8 @@ property_value: dc:contributor https://github.com/tmeehan id: UBERON:0009735 name: sublaminar layers S1 or S3 or S4 def: "One of sublaminar layers S1, S3, or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] +subset: human_subset +subset: mouse_subset xref: CP:0001044 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 @@ -301010,6 +312525,8 @@ property_value: dc:contributor https://github.com/tmeehan id: UBERON:0009736 name: sublaminar layers S3 or S4 or S5 def: "One of sublaminar layers S3, S4, or S5." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] +subset: human_subset +subset: mouse_subset xref: CP:0001045 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008924 ! sublaminar layer S3 @@ -301022,6 +312539,8 @@ property_value: dc:contributor https://github.com/tmeehan id: UBERON:0009737 name: sublaminar layers S1 or S2 or S3 or S4 def: "One of sublaminar layers S1, S2, S3, or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] +subset: human_subset +subset: mouse_subset xref: CP:0001046 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 @@ -301035,6 +312554,8 @@ property_value: dc:contributor https://github.com/tmeehan id: UBERON:0009738 name: border of sublaminar layers S1 and S2 def: "The region extending out from the boundary between layers S1 and S2." [GOC:plr, https://github.com/obophenotype/uberon/issues/31, https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: CP:0001038 is_a: UBERON:0009740 ! border between sublaminar layers intersection_of: UBERON:0009740 ! border between sublaminar layers @@ -301050,6 +312571,8 @@ property_value: dc:contributor https://github.com/tmeehan id: UBERON:0009739 name: border of sublaminar layers S3 and S4 def: "The region extending out from the boundary between sublaminar layers S3 and S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31, https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: CP:0001039 is_a: UBERON:0009740 ! border between sublaminar layers intersection_of: UBERON:0009740 ! border between sublaminar layers @@ -301065,6 +312588,8 @@ property_value: dc:contributor https://github.com/tmeehan id: UBERON:0009740 name: border between sublaminar layers def: "A region of the retina corresponding to a portion of two adjacent substratum layers." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0022303 ! nervous system cell part layer relationship: overlaps UBERON:0008921 ! substratum of layer of retina @@ -301081,6 +312606,8 @@ consider: XAO:1000007 id: UBERON:0009742 name: proamniotic cavity def: "The cavity of the developing embryo that is formed within the epiblast tissue prior to the closing of the proamniotic canal by the amniotic folds." [MP:0011197] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:36038 is_a: UBERON:0002553 ! anatomical cavity @@ -301091,6 +312618,8 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:0009743 name: visceral yolk sac cavity def: "The closed space containing the yolk, formed by the fusion of the edges of the embryonic epiblast (hypoblast) and later surrounded by the visceral yolk sac (hypoblast and visceral yolk sac mesoderm)." [MP:0011201] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0007473 ! lumen of epithelial sac is_a: UBERON:0012466 ! extraembryonic cavity @@ -301106,6 +312635,8 @@ name: lymph node medullary sinus def: "The channels in the lymph node medulla that separate the medullary cords and are crossed by a reticulum of cells and fibers and bounded by littoral cells; lymph flows through the medullary sinus from the cortical sinuses and into the efferent lymphatic vessels." [MP:0011222] comment: Lymph flows into the medullary sinuses from cortical sinuses, and into efferent lymphatic vessels. Medullary sinuses contain histiocytes (immobile macrophages) and reticular cells.[WP] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lymph node medullary sinusoid" RELATED [] synonym: "medullary sinus" BROAD [] @@ -301121,6 +312652,8 @@ id: UBERON:0009745 name: lymph node medullary cord def: "The dense rope-like structures of lymphatic tissue located between the medullary sinuses in the medulla of a lymph node." [MP:0011224] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "medullary cord" BROAD [] xref: EMAPA:37897 {source="MA:th"} @@ -301133,6 +312666,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0009746 name: head fold of embryonic disc def: "The crescent-shaped, ventrally located fold of the embryonic disc at the future cephalic end of the developing embryo." [MP:0011257] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "head fold" EXACT [] xref: FMA:295585 @@ -301145,6 +312680,8 @@ relationship: part_of UBERON:0004749 ! blastodisc id: UBERON:0009747 name: tail fold of embryonic disc def: "The crescent-shaped, ventrally located fold of the embryonic disc at the future caudal end of the developing embryo." [MP:0011258] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "tail fold" EXACT [] xref: FMA:295589 @@ -301157,6 +312694,8 @@ relationship: part_of UBERON:0004749 ! blastodisc id: UBERON:0009748 name: cephalic neural fold def: "The elevated margins of the neural groove that are located in the future cephalic region of the embryo." [MP:0011259] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:16090 is_a: UBERON:0005062 ! neural fold @@ -301165,6 +312704,8 @@ is_a: UBERON:0005062 ! neural fold id: UBERON:0009749 name: limb mesenchyme def: "The primordial embryonic connective tissue of the developing limbs, autopods and digits, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to limb connective tissue, bone and musculature in conjunction with myotome cells." [MP:0011261] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "limb mesoderm" RELATED [Geisha:syn, NCBITaxon:8782] xref: EMAPA:32705 @@ -301178,6 +312719,8 @@ property_value: external_ontology_notes "EMAPA mapping from TH" xsd:string {exte id: UBERON:0009751 name: cardiac mesenchyme def: "The embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing cardiac structures." [MP:0011264] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "heart mesenchyme" EXACT [EMAPA:36438] xref: EHDAA2:0004162 @@ -301195,6 +312738,8 @@ name: pancreas mesenchyme def: "The embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing pancreas." [MP:0011265] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EFO:0002557 xref: EMAPA:26220 @@ -301207,6 +312752,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0009753 name: adrenal gland cortex zone +subset: human_subset +subset: mouse_subset synonym: "adrenal cortical region" EXACT [FMA:69086] synonym: "region of adrenal cortex" RELATED [FMA:69086] xref: EMAPA:35113 @@ -301222,6 +312769,8 @@ relationship: part_of UBERON:0001235 {source="MA"} ! adrenal cortex id: UBERON:0009754 name: blubber def: "A thick layer of vascularized adipose tissue found under the skin of all cetaceans, pinnipeds and sirenians." [Wikipedia:Blubber] +subset: human_subset +subset: mouse_subset xref: SCTID:83953006 xref: Wikipedia:Blubber is_a: UBERON:0002190 {source="Wikipedia"} ! subcutaneous adipose tissue @@ -301264,6 +312813,8 @@ relationship: in_taxon NCBITaxon:9753 ! Physeter id: UBERON:0009758 name: abdominal ganglion def: "A ganglion that is part of a abdominal segment of trunk." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: SCTID:280508003 is_a: UBERON:0007134 ! trunk ganglion intersection_of: UBERON:0000045 ! ganglion @@ -301274,6 +312825,8 @@ relationship: part_of UBERON:0002417 ! abdominal segment of trunk id: UBERON:0009767 name: proximal interphalangeal joint def: "An inter-phalangeal joint that connects a proximal phalanx to either a medial or distal phalanx." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "PIJ joint" NARROW [Wikipedia:Interphalangeal_articulations_of_the_hand] synonym: "PIP joint" NARROW [Wikipedia:Interphalangeal_articulations_of_the_hand] @@ -301289,6 +312842,8 @@ relationship: connects UBERON:0004302 ! proximal phalanx id: UBERON:0009768 name: distal interphalangeal joint def: "An inter-phalangeal joint that connects a distal phalanx to either a medial or proximal phalanx." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "DIJ joint" NARROW [Wikipedia:Interphalangeal_articulations_of_the_hand] synonym: "DIP joint" NARROW [Wikipedia:Interphalangeal_articulations_of_the_hand] @@ -301302,6 +312857,8 @@ relationship: connects UBERON:0004300 ! distal phalanx [Term] id: UBERON:0009769 name: left common cardinal vein +subset: human_subset +subset: mouse_subset synonym: "common cardinal vein left" EXACT [EHDAA2:0000304] xref: EHDAA2:0000304 xref: FMA:70311 @@ -301314,6 +312871,8 @@ property_value: taxon_notes "the left duct atrophies at metamorphosis in the lam id: UBERON:0009771 name: left anterior cardinal vein def: "An anterior cardinal vein that is in_the_left_side_of a multicellular organism." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left precardinal vein" EXACT [FMA:70313] synonym: "precardinal vein left" EXACT [EHDAA2:0000127] xref: EHDAA2:0000127 @@ -301330,6 +312889,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0009772 name: right anterior cardinal vein def: "An anterior cardinal vein that is in_the_right_side_of a multicellular organism." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "precardinal vein right" EXACT [EHDAA2:0004537] synonym: "right precardinal vein" EXACT [FMA:70312] xref: EHDAA2:0004537 @@ -301347,6 +312908,8 @@ id: UBERON:0009773 name: renal tubule def: "A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and to play a role in fluid homeostasis." [DOI:10.1371/journal.pone.0099864, GO:0061333, GOC:dph, GOC:mtg_kidney_jan10] subset: grouping_class +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "renal tubule (generic)" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "tubule of excretory system" EXACT [https://orcid.org/0000-0002-6601-2165, OBOL:automatic] @@ -301366,6 +312929,8 @@ id: UBERON:0009775 name: lateral medullary reticular complex def: "A nuclear complex of the medullary reticular formation that can be divided into three subnuclei: the parvocellular, magnocellular and the subtrigeminal[WP,modified]." [Wikipedia:Lateral_reticular_nucleus] comment: The lateral reticular nucleus, of the funiculus, can be divided into three subnuclei, the parvocellular, magnocellular and the subtrigeminal. As is typical of the reticular formation, none of these are very distinct subnuclei, but rather blurred distinctions between cell types and location. The lateral reticular nucleus sends all of its projections to the cerebellum. The parvocellular portion of the LRN and the immediately adjacent magnocellular portion send most their projections to the vermis of the cerebellum. The rest of the magnocellular subnucleus sends its projections to the hemisphere regions of the cerebellum. The subtrigeminal nucleus sends its projections to the flocculonodular lobe. All of these efferent pathways are projected in an ipsilateral manner to the cerebellum, the most abundant of which are those to the vermis. This nucleus is also involved in the mediation of inspiration (in-breathing) with a part of the ventral r. nucleus. The afferent pathways to the LRN come from the spinal cord and higher brain structures. Most of the afferents come from the ipsilateral dorsal horn of the spinal cord and project exclusively to the parts of the LRN that do not receive input from the cortex. The spinal cord projections terminate mostly in the parvocellular region along with the adjacent magnocellular cells. This implies that most input from the spinal cord is relayed into the vermis[WP] +subset: human_subset +subset: mouse_subset synonym: "lateral group of medullary reticular formation" EXACT [FMA:72573] synonym: "lateral medullary reticular group" EXACT [FMA:72573] synonym: "lateral reticular formation of the medulla oblongata" EXACT [FMA:72573] @@ -301381,6 +312946,8 @@ relationship: part_of UBERON:0002559 {source="FMA"} ! medullary reticular format [Term] id: UBERON:0009776 name: intermediate reticular formation +subset: human_subset +subset: mouse_subset synonym: "intermediate reticular formations" RELATED OMO:0003004 [ZFA:0000219] xref: TAO:0000219 xref: ZFA:0000219 @@ -301393,6 +312960,8 @@ property_value: term_tracker_item "https://sourceforge.net/tracker/?func=detail& id: UBERON:0009777 name: intermediate reticular nucleus def: "A nucleus of brain that is part of a intermediate reticular formation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: BAMS:IRN xref: BAMS:IRt xref: DHBA:12620 @@ -301408,6 +312977,8 @@ relationship: part_of UBERON:0009776 ! intermediate reticular formation id: UBERON:0009778 name: pleural sac def: "A serous sac that has the pleura and the pleural cavity as parts." [https://github.com/obophenotype/uberon/issues/86] +subset: human_subset +subset: mouse_subset subset: non_informative xref: EHDAA2:0004737 xref: FMA:9690 @@ -301428,6 +312999,8 @@ property_value: external_ontology_notes "despite its name the class EHDAA2:00047 id: UBERON:0009779 name: cardiac muscle tissue of right auricle def: "A cardiac muscle tissue that is part of a right atrium auricular region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cardiac muscle of right auricular region" EXACT [EMAPA:16826] synonym: "right atrium auricular region heart muscle" EXACT [EHDAA2:0004169] synonym: "right auricular region cardiac muscle" RELATED [VHOG:0000611] @@ -301447,6 +313020,8 @@ relationship: part_of UBERON:0006631 ! right atrium auricular region id: UBERON:0009780 name: cardiac muscle tissue of left auricle def: "A cardiac muscle tissue that is part of a left atrium auricular region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cardiac muscle of left auricular region" EXACT [EMAPA:16818] synonym: "left atrium auricular region heart muscle" EXACT [EHDAA2:0004168] xref: EHDAA2:0004168 @@ -301464,6 +313039,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/321" xsd: id: UBERON:0009834 name: dorsolateral prefrontal cortex def: "The dorsolateral prefrontal cortex (DL-PFC or DLPFC), according to a more restricted definition, is roughly equivalent to Brodmann areas 9 and 46.[1] According to a broader definition DL-PFC consists of the lateral portions of Brodmann areas 9 - 12, of areas 45, 46, and the superior part of area 47.[2] These regions mainly receive their blood supply from the middle cerebral artery. With respect to neurotransmitter systems, there is evidence that dopamine plays a particularly important role in DL-PFC.[2]DL-PFC is connected to the orbitofrontal cortex, and to a variety of brain areas, which include the thalamus, parts of the basal ganglia (the dorsal caudate nucleus), the hippocampus, and primary and secondary association areas of neocortex, including posterior temporal, parietal, and occipital areas." [Wikipedia:Dorsolateral_prefrontal_cortex] +subset: human_subset +subset: mouse_subset xref: DHBA:10173 xref: FMA:276189 xref: Wikipedia:Dorsolateral_prefrontal_cortex @@ -301476,6 +313053,8 @@ property_value: editor_note "check dorsolateral prefrontal neocortex" xsd:string id: UBERON:0009835 name: anterior cingulate cortex def: "The frontal part of the cingulate cortex that resembles a collar form around the corpus callosum. It includes both the ventral and dorsal areas of the cingulate cortex. Wikipedia:File:Gray727.svg." [BIRNLEX:936] +subset: human_subset +subset: mouse_subset synonym: "ACC" RELATED OMO:0003000 [BTO:0004249] xref: BIRNLEX:936 xref: BTO:0004249 @@ -301490,6 +313069,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/22/Gr [Term] id: UBERON:0009836 name: fronto-orbital gyrus +subset: human_subset +subset: mouse_subset synonym: "fronto-orbital gyrus" EXACT [BIRNLEX:1243] synonym: "gyrus fronto-orbitalis" RELATED OMO:0003011 [NeuroNames:90] synonym: "orbito-frontal gyrus" EXACT [] @@ -301507,6 +313088,8 @@ relationship: part_of UBERON:0004167 ! orbitofrontal cortex id: UBERON:0009840 name: lower rhombic lip def: "Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus." [ZFIN:curator] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "caudal rhombic lip" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "lower (caudal) rhombic lip" EXACT [] @@ -301528,6 +313111,8 @@ relationship: part_of UBERON:0006215 {source="ZFA"} ! rhombic lip id: UBERON:0009841 name: upper rhombic lip def: "Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary." [ZFIN:curator] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebellar anlage" EXACT [ZFA:0001442] synonym: "presumptive cerebellum" EXACT [ZFA:0001442] @@ -301548,6 +313133,8 @@ relationship: part_of UBERON:0006215 {source="ZFA"} ! rhombic lip id: UBERON:0009842 name: glandular acinus def: "The many-lobed berry cluster of cells that is the terminous of a gland where the secretion is produced is acinar in form." [Wikipedia:Acinus] +subset: human_subset +subset: mouse_subset synonym: "acini" RELATED OMO:0003004 [Wikipedia:Acinus] synonym: "acinus" BROAD [FMA:55588] xref: FMA:55588 @@ -301568,6 +313155,8 @@ id: UBERON:0009843 name: prostate epithelial cord def: "A solid cord of prostate epithelium." [GO:0060527, OBOL:automatic, PMID:18977204] comment: Complexity is conferred on the prostate during a postnatal development phase known as branching morphogenesis. Solid cords of prostate epithelium formed in utero elongate postnatally and their tips are bifurcated into primary, secondary, and tertiary branches in a pattern that is unique for each prostate lobe. Branching morphogenesis proceeds differentially for each of the three mouse prostate lobes (ventral, dorsolateral, and anterior) and is completed by about postnatal day 20 in mice, providing each lobe with unique glandular architecture [5]. It is important to note that the developing human prostate undergoes a similar series of morphogenetic events especially during prostatic bud formation, but gives rise to a mature glandular prostate that is unique from the rodent and features peripheral, central, and transitional zones[PMID:18977204] +subset: human_subset +subset: mouse_subset synonym: "cord of prostate epithelium" EXACT [PMID:18977204] synonym: "epithelial cord of prostate" EXACT [] is_a: UBERON:0005154 ! epithelial cord @@ -301579,6 +313168,8 @@ relationship: has_potential_to_develop_into UBERON:0002367 ! prostate gland id: UBERON:0009844 name: urogenital sinus lumen def: "An anatomical space that surrounded_by a primitive urogenital sinus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0002142 is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space @@ -301592,6 +313183,8 @@ relationship: surrounded_by UBERON:0004902 ! urogenital sinus epithelium id: UBERON:0009845 name: urogenital sinus mesenchyme def: "Mesenchyme that surrounds primitive urogenital sinus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "UGM" EXACT OMO:0003000 [PMID:18977204] xref: EMAPA:31500 is_a: UBERON:0003104 ! mesenchyme @@ -301604,6 +313197,8 @@ property_value: development_notes "Androgen receptor (AR) activation releases in id: UBERON:0009846 name: embryonic cloacal epithelium def: "An epithelium that is part of a embryonic cloaca." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cloacal epithelium" BROAD [EHDAA2:0004585] xref: EHDAA2:0004585 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium @@ -301620,6 +313215,8 @@ relationship: part_of UBERON:0003929 {source="EHDAA2"} ! digestive tract epithel id: UBERON:0009847 name: prostate field def: "A specific region of the urogenital sinus epithelium into the area in which the prostate gland will develop." [GO:0060515, GOC:dph, PMID:18977204] +subset: human_subset +subset: mouse_subset synonym: "prostate primordium" RELATED [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -301636,6 +313233,8 @@ relationship: part_of UBERON:0004902 {source="PMID:18977204"} ! urogenital sinus id: UBERON:0009848 name: zona limitans intrathalamica def: "A narrow stripe of cells that lies between the prospective dorsal and ventral thalami. This boundary contains signals that pattern the prethalamic and thalamic territories of the future mid-diencephalon." [GO:0022006, GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, PMID:11425897, PMID:16452095, Wikipedia:Zona_limitans_intrathalamica] +subset: human_subset +subset: mouse_subset synonym: "MDO" RELATED OMO:0003000 [Wikipedia:Thalamus] synonym: "mid-diencephalic organizer" RELATED [Wikipedia:Thalamus] synonym: "ZLI" EXACT OMO:0003000 [GO:0022006] @@ -301678,6 +313277,8 @@ relationship: present_in_taxon NCBITaxon:6239 ! Caenorhabditis elegans id: UBERON:0009851 name: border of sublaminar layers S4 and S5 def: "The intersection of sublaminar layers S4 and S5." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] +subset: human_subset +subset: mouse_subset is_a: UBERON:0009740 ! border between sublaminar layers intersection_of: UBERON:0009740 ! border between sublaminar layers intersection_of: overlaps UBERON:0008925 ! sublaminar layer S4 @@ -301692,6 +313293,8 @@ property_value: dc:contributor https://github.com/tmeehan id: UBERON:0009852 name: border of sublaminar layers S2 and S3 def: "The intersection of sublaminar layers S2 and S3." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] +subset: human_subset +subset: mouse_subset is_a: UBERON:0009740 ! border between sublaminar layers intersection_of: UBERON:0009740 ! border between sublaminar layers intersection_of: overlaps UBERON:0008923 ! sublaminar layer S2 @@ -301708,6 +313311,8 @@ name: body of uterus def: "The part of the uterus above the isthmus and below the orifices of the uterine tubes." [http://medical-dictionary.thefreedictionary.com/corpus+uteri] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "corpus uteri" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "uterine body" EXACT [FMA:17739] synonym: "uterine corpus" EXACT [FMA:17739] @@ -301732,6 +313337,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/u id: UBERON:0009854 name: digestive tract diverticulum def: "Branch or outpocketing of the digestive tract." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "diverticulum of gut" RELATED [FBbt:00100316] synonym: "intestinal pouch" RELATED [] xref: FBbt:00100316 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} @@ -301752,6 +313359,8 @@ relationship: in_taxon NCBITaxon:7586 ! Echinodermata [Term] id: UBERON:0009856 name: sac +subset: human_subset +subset: mouse_subset synonym: "diverticulum" RELATED [] synonym: "pouch" EXACT [] xref: galen:Diverticulum @@ -301764,6 +313373,8 @@ relationship: has_quality PATO:0001987 ! saccular id: UBERON:0009857 name: cavum septum pellucidum def: "A space enclosed within the laminae of the septum pelludicum, the membranous partition that seperates the frontal horns of the ventricle. contains cerebrospinal fluid (CSF) that filters from the ventricles through the septal laminae. bounded anteriorly by the genu of the corpus callosum; superiorly by the body of the corpus callosum; posteriorly by the anterior limb and pillars of the fornix; inferiorly by the anterior commissure and the rostrum of the corpus callosum; and laterally by the leaflets of the septum pellucidum." [BTO:0003447, Wikipedia:Cave_of_septum_pellucidum] +subset: human_subset +subset: mouse_subset synonym: "cave of septum pellucidum" EXACT [FMA:61874] synonym: "cavum of septum pellucidum" EXACT [FMA:61874] synonym: "cavum septi pellucidi" RELATED OMO:0003011 [Wikipedia:Cave_of_septum_pellucidum] @@ -301791,6 +313402,8 @@ property_value: taxon_notes "In humans, present in 100% of fetuses, but over 85% [Term] id: UBERON:0009858 name: outer fibrous layer of periosteum +subset: human_subset +subset: mouse_subset synonym: "capsular layer of periosteum" EXACT [FMA:234354] synonym: "external layer of periosteum" EXACT [] synonym: "external periosteum" EXACT [] @@ -301806,6 +313419,8 @@ relationship: part_of UBERON:0002515 {source="FMA"} ! periosteum id: UBERON:0009859 name: endosteum def: "A thin layer of connective tissue that lines the surface of the bony tissue that forms the medullary cavity of long bones." [Wikipedia:Endosteum] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:32692 xref: NCIT:C13183 @@ -301911,6 +313526,8 @@ id: UBERON:0009870 name: zone of stomach alt_id: UBERON:0009034 def: "A division of the stomach. The stomach can be divided based on mucosal histology (glandular epithelium and gastric glands) and the relative position and type of gastric gland." [ISBN:0073040584, Wikipedia:Stomach#Sections] +subset: human_subset +subset: mouse_subset synonym: "gastric zone" EXACT [FMA:14558] synonym: "region of stomach" EXACT [] synonym: "section of stomach" EXACT [] @@ -301931,6 +313548,8 @@ property_value: editor_note "We follow Kardong in defining stomach regions by gl id: UBERON:0009871 name: nephrogenic zone def: "Outer portion of the renal cortex. Site of formation of medullary and cortical elements." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cortical nephrogenic niche" EXACT [PMID:29449449] synonym: "cortical nephrogenic zone" EXACT [PMID:29449449] @@ -301946,6 +313565,8 @@ property_value: taxon_notes "see http://www.ncbi.nlm.nih.gov/pubmed/12761251 for id: UBERON:0009877 name: metapodium region def: "Intermediate segment of the autopod, between the mesopodial region and and acropodial region. Examples: metacarpal region, metatarsal region." [https://orcid.org/0000-0002-6601-2165, MA:th] +subset: human_subset +subset: mouse_subset synonym: "cannon region" NARROW [http://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] synonym: "equine cannon region" NARROW [http://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] synonym: "metacarpal or metatarsal part of limb" EXACT [] @@ -301968,6 +313589,8 @@ property_value: terminology_notes "Naming conventions for pod terms under discus id: UBERON:0009878 name: mesopodial skeleton def: "The collection of all skeletal elements in a mesopodium. Examples: the tarsal skeleton, the carpal skeleton." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "basipodium" RELATED [VSAO:0005022, VSAO:NI] synonym: "basipodium skeleton" EXACT [VSAO:0005022, VSAO:NI] synonym: "carpal/tarsal skeleton" EXACT [] @@ -301992,6 +313615,8 @@ property_value: external_definition "Limb skeleton subdivision consisting of end id: UBERON:0009879 name: tarsal skeleton def: "Subdivision of skeleton that consists of endochondral elements distal to the zeugopodial skeletal elements which constitute the proximal region of the posterior autopod skeleton[PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/94, PHENOSCAPE:ad, VSAO:0005024] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "basipodium" RELATED [VSAO:0005024] synonym: "hind mesopodial skeleton" EXACT [] @@ -302035,6 +313660,8 @@ property_value: taxon_notes "Not always associated with digits, in sarcopterygia id: UBERON:0009880 name: carpal skeleton def: "Subdivision of skeleton that consists of the endochondral elements distal to the anterior limb/fin zeugopodial skeletal elements which constitute the proximal region of the anterior autopod skeleton[PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/93, PHENOSCAPE:ad] +subset: human_subset +subset: mouse_subset synonym: "carpal bones" EXACT [EMAPA:25056, FMA:71335] synonym: "carpal bones set" EXACT [FMA:71335] synonym: "carpus" RELATED [MA:0000040, XAO:0003207] @@ -302075,6 +313702,8 @@ property_value: taxon_notes "The structure of the carpus varies widely between d id: UBERON:0009881 name: anterior lateral plate mesoderm subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "ALPM" EXACT [ZFA:0005041] xref: EFO:0003704 xref: TAO:0005041 @@ -302089,6 +313718,8 @@ relationship: part_of UBERON:0003081 {source="ZFA"} ! lateral plate mesoderm id: UBERON:0009882 name: anal column def: "One of a number of vertical folds, produced by an infolding of the mucous membrane and some of the muscular tissue in the upper half of the lumen of the anal canal[WP]." [Wikipedia:Anal_columns] +subset: human_subset +subset: mouse_subset synonym: "column of Morgagni" EXACT [FMA:15713] synonym: "columnae anales" RELATED OMO:0003011 [Wikipedia:Anal_columns] xref: FMA:15713 @@ -302107,6 +313738,8 @@ id: UBERON:0009883 name: medullary ray def: "A renal, cortical lobule, consisting of the ascending or descending limbs of the loop of Henle or of the collecting tubules; medullary rays are regions where parallel arrays of straight tubules travel perpendicular to the capsule and extend from the cortex to the medulla." [MP:0011347, Wikipedia:Bone_marrow_of_ovaryry_ray_(anatomy)] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "Ferrein's pyramid" EXACT [MP:0011347] synonym: "kidney medullary ray" EXACT [MP:0011347] @@ -302128,6 +313761,8 @@ id: UBERON:0009885 name: interlobar artery def: "An artery that supplies a renal lobe." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Interlobar_arteries] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "arteriae interlobares renis" EXACT OMO:0003004 [FMA:TA] synonym: "arteriae interlobares renis" RELATED OMO:0003011 [Wikipedia:Interlobar_arteries] @@ -302154,6 +313789,8 @@ id: UBERON:0009887 name: interlobar vein def: "The interlobar veins are veins of the renal circulation which drain the renal lobes." [Wikipedia:Interlobar_veins] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "interlobar vein of kidney" EXACT [FMA:71631] synonym: "interlobar veins of kidney" RELATED [FMA:71631] synonym: "set of interlobar veins of kidney" RELATED [FMA:71631] @@ -302176,6 +313813,8 @@ id: UBERON:0009888 name: Koller's sickle def: "A local thickening of cells that acts as a margin separating sheets of cells from posterior margin of avian blastoderms from hypoblasts as they migrate anteriorly to push primary hypoblast cells anteriorly to form a secondary hypoblast known as the endoblast." [PMID:9693154, Wikipedia:Koller's_sickle] subset: early_development +subset: human_subset +subset: mouse_subset synonym: "Kohler's sickle" EXACT [] xref: Wikipedia:Koller's_sickle is_a: UBERON:0002050 ! embryonic structure @@ -302185,6 +313824,8 @@ relationship: in_taxon NCBITaxon:7742 ! Vertebrata id: UBERON:0009889 name: secondary heart field def: "A specific region of the lateral mesoderm that will form the majority of the mesodermal component of the right ventricle, arterial pole (outflow tract) and venous pole (inflow tract)." [GO:0003139, GOC:mtg_heart, GOC:rl] +subset: human_subset +subset: mouse_subset synonym: "anterior heart field" EXACT [PMID:17276708] synonym: "anterior/second heart field" EXACT [Geisha:syn, NCBITaxon:8782] synonym: "second heart field" EXACT [XAO:0004186] @@ -302206,6 +313847,8 @@ property_value: taxon_notes "In general, the two studies in chick concluded that id: UBERON:0009890 name: anterior intestinal portal def: "Opening of the foregut into the midgut." [http://www.drugs.com/dict/fovea-cardiaca.html] +subset: human_subset +subset: mouse_subset synonym: "fovea cardiaca" EXACT [http://www.drugs.com/dict/fovea-cardiaca.html] is_a: UBERON:0004111 ! anatomical conduit relationship: adjacent_to UBERON:0001041 ! foregut @@ -302217,6 +313860,8 @@ relationship: part_of UBERON:0006235 ! foregut-midgut junction id: UBERON:0009891 name: facial mesenchyme def: "Mesenchyme that is part of a developing face." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "face mesenchyme" EXACT [] synonym: "mesenchyme of face" EXACT [] xref: EMAPA:35337 @@ -302265,6 +313910,8 @@ relationship: in_taxon NCBITaxon:7712 ! Tunicata id: UBERON:0009897 name: right auditory cortex def: "An auditory cortex that is in the left side of a brain." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:242654 is_a: UBERON:0001393 ! auditory cortex is_a: UBERON:0015212 ! lateral structure @@ -302277,6 +313924,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0009898 name: left auditory cortex def: "An auditory cortex that is in the right side of a brain." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:242656 is_a: UBERON:0001393 ! auditory cortex is_a: UBERON:0015212 ! lateral structure @@ -302289,6 +313938,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0009899 name: pole of cerebral hemisphere def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole." [Wikipedia:Poles_of_cerebral_hemispheres] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Poles_of_cerebral_hemispheres is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001869 ! cerebral hemisphere @@ -302298,6 +313949,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Hu id: UBERON:0009906 name: root of optic nerve def: "A nerve root that extends_fibers_into a nerve connecting eye with brain." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "optic nerve root" EXACT [BIRNLEX:1328] synonym: "optic tract root" EXACT [FMA:84573] synonym: "root of optic tract" EXACT [FMA:84573] @@ -302312,6 +313965,8 @@ property_value: editor_note "TODO - check. See comments for optic tract. FMA als [Term] id: UBERON:0009907 name: sensory root of trigeminal nerve +subset: human_subset +subset: mouse_subset synonym: "radix sensoria (nervus trigeminus [v])" EXACT [FMA:52611] synonym: "radix sensoria nervus trigemini" EXACT OMO:0003011 [FMA:52611, FMA:TA] synonym: "sensory root of the trigeminal nerve" RELATED [BAMS:s5, BAMS:sV] @@ -302329,6 +313984,8 @@ relationship: develops_from UBERON:0002342 {source="Wikipedia"} ! neural crest [Term] id: UBERON:0009908 name: caudal root of abducens nerve +subset: human_subset +subset: mouse_subset synonym: "radix caudalis nervi abducentis" EXACT [ZFA:0000179] xref: TAO:0000179 xref: ZFA:0000179 @@ -302337,6 +313994,8 @@ is_a: UBERON:0002786 ! root of abducens nerve [Term] id: UBERON:0009909 name: rostral root of abducens nerve +subset: human_subset +subset: mouse_subset xref: TAO:0000665 xref: ZFA:0000665 is_a: UBERON:0002786 ! root of abducens nerve @@ -302345,6 +314004,8 @@ is_a: UBERON:0002786 ! root of abducens nerve id: UBERON:0009910 name: posterior lateral plate mesoderm subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "PLPM" EXACT [ZFA:0005042] xref: EFO:0003705 xref: TAO:0005042 @@ -302356,6 +314017,8 @@ relationship: part_of UBERON:0003081 {source="ZFA"} ! lateral plate mesoderm [Term] id: UBERON:0009911 name: lobule +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "lobulus" EXACT OMO:0003011 [FMA:45737, FMA:TA] xref: FMA:45737 @@ -302368,6 +314031,8 @@ property_value: editor_note "todo - provide definition. Clearly distinguish betw id: UBERON:0009912 name: anatomical lobe def: "A portion of an organ, such as the liver, lung, breast, or brain." [ncithesaurus:Lobe] +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "lobus" EXACT OMO:0003011 [FMA:45728, FMA:TA] xref: FMA:45728 @@ -302379,6 +314044,8 @@ is_a: UBERON:0000063 {source="cjm"} ! organ subunit id: UBERON:0009913 name: renal lobe def: "The portion of a kidney consisting of a renal medullary pyramid and the renal cortex above it[MP]. It is composed of many renal lobules[WP]." [MP:0011381, Wikipedia:Renal_lobe] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "kidney lobe" EXACT [MP:0011381] synonym: "lobi renales" RELATED OMO:0003011 [Wikipedia:Renal_lobe] @@ -302402,6 +314069,8 @@ id: UBERON:0009914 name: renal lobule def: "The portion of a renal lobe consisting of nephrons grouped around a single medullary ray and draining into a single collecting duct; human kidneys have multilobular, multipapillary architecture while mice and rats have unilobular, unipapillary kidneys." [MP:0011382, Wikipedia:Cortical_lobule] comment: Alternate definition: One of the subdivisions of the kidney, consisting of a medullary ray and that portion of the convoluted port (renal corpuscles and convoluted tubules) associated with its collecting duct. -http://www.mondofacto.com/facts/dictionary?lobulus+corticalis+renalis +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cortical lobule" RELATED [MP:0011382, Wikipedia:Cortical_lobule] synonym: "cortical lobule of kidney" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] @@ -302429,6 +314098,8 @@ relationship: part_of UBERON:0009913 {source="FMA"} ! renal lobe id: UBERON:0009916 name: wall of ureter def: "An anatomical wall that is part of a ureter." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ureteral wall" EXACT [FMA:15888] xref: FMA:15888 xref: SCTID:279397004 @@ -302444,6 +314115,8 @@ relationship: part_of UBERON:0000056 ! ureter id: UBERON:0009917 name: kidney corticomedullary boundary def: "The region demarcating the renal medulla from the surrounding cortex; end-stage renal failure may be associated with loss of the normal corticomedullary boundary." [MP:0011376] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37886 {source="MA:th"} is_a: UBERON:0007651 ! anatomical junction @@ -302459,6 +314132,8 @@ relationship: part_of UBERON:0002113 {source="MP"} ! kidney id: UBERON:0009918 name: retrotrapezoid nucleus def: "The loose collection of neurons that reside in the rostral medulla close to the medullary surface, ventral and immediately caudal of nVII, that are crucial for CO2 sensing in the brain." [MP:0011406] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: DHBA:12531 xref: DMBA:17327 @@ -302472,6 +314147,8 @@ id: UBERON:0009919 name: ureter smooth muscle def: "The smooth muscle tissue surrounding the epithelium of the ureter." [MP:0011426] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ureteral smooth muscle" EXACT [MP:0011426] synonym: "ureteral smooth muscle layer" EXACT [EMAPA:28844] @@ -302487,6 +314164,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0009920 name: optic neural crest +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001315 xref: EHDAA:1122 is_a: UBERON:0007213 ! mesenchyme derived from head neural crest @@ -302516,6 +314195,8 @@ relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:0009950 name: olfactory bulb plexiform layer +subset: human_subset +subset: mouse_subset synonym: "plexiform layer" BROAD [NLXANAT:20090405] xref: NLXANAT:20090405 is_a: UBERON:0004001 {source="NIFSTD"} ! olfactory bulb layer @@ -302525,6 +314206,8 @@ property_value: editor_note "check if the NIF class is actually a grouping class id: UBERON:0009951 name: main olfactory bulb def: "The main olfactory bulb has a multi-layered cellular architecture. In order from surface to the center the layers are: Glomerular layer, External plexiform layer, Mitral cell layer, Internal plexiform layer, Granule cell layer[WP]." [Wikipedia:Olfactory_bulb#Main_olfactory_bulb] +subset: human_subset +subset: mouse_subset xref: BAMS:MOB xref: MBA:507 xref: MESH:D009830 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} @@ -302541,6 +314224,8 @@ property_value: external_ontology_notes "the structure in many ontologies called id: UBERON:0009952 name: dentate gyrus subgranular zone def: "A narrow layer of cells located between the granule cell layer and hilus of the dentate gyrus, where adult neurogenesis occurs." [Wikipedia:Subgranular_zone] +subset: human_subset +subset: mouse_subset synonym: "SGZ" BROAD OMO:0003000 [] synonym: "subgranular zone" EXACT [] synonym: "subgranular zone of dentate gyrus" EXACT [] @@ -302558,6 +314243,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/9/99/D id: UBERON:0009953 name: post-embryonic organism def: "A multicellular organism that existence_starts_with a post-embryonic stage." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "post-hatching organism" NARROW [https://orcid.org/0000-0002-6601-2165] synonym: "post-natal organism" NARROW [https://orcid.org/0000-0002-6601-2165] synonym: "postnatal mouse" NARROW [MA:0002405] @@ -302574,6 +314261,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/667" xsd: id: UBERON:0009954 name: vomeronasal system def: "A vertebrate nasal chemosensory system that is responsible for detecting intraspecific pheromonal cues as well as environmental odorants." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001032 ! sensory system relationship: capable_of GO:0043695 {source="Wikipedia"} ! detection of pheromone relationship: in_taxon NCBITaxon:8287 ! Sarcopterygii @@ -302585,6 +314274,8 @@ id: UBERON:0009955 name: neurogenic placode def: "Cranial ectodermal placode with potential to develop into a component of the nervous system, such as nerves or ganglia." [http://orcid.org/0000-0002-6601-2165, PMID:11523831] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "neurogenic placodes" EXACT OMO:0003004 [ZFA:0001309] synonym: "placodae neurogenicae" RELATED OMO:0003011 [Wikipedia:Neurogenic_placodes] xref: EFO:0003460 @@ -302625,6 +314316,8 @@ relationship: in_taxon NCBITaxon:7737 {source="Wikipedia"} ! Branchiostoma id: UBERON:0009958 name: bladder lumen def: "An anatomical space that is enclosed by a urinary bladder." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bladder cavity" EXACT [FMA:15924] synonym: "cavity of urinary bladder" EXACT [FMA:15924] synonym: "lumen of urinary bladder" EXACT [FMA:15924] @@ -302644,6 +314337,8 @@ relationship: part_of UBERON:0001255 {source="FMA"} ! urinary bladder id: UBERON:0009959 name: lumen of oropharynx def: "An anatomical space that is enclosed by a oropharynx." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "oropharyngeal cavity" EXACT [EHDAA2:0004556] synonym: "oropharynx lumen" EXACT [FMA:55095] xref: EHDAA2:0004556 @@ -302660,6 +314355,8 @@ relationship: part_of UBERON:0001731 ! cavity of pharynx id: UBERON:0009960 name: esophagus smooth muscle circular layer def: "A circular muscle layer of muscular coat that is part of a esophagus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "circular muscle layer of esophagus" EXACT [FMA:67605] synonym: "esophagus smooth muscle circular layer" RELATED [MA:0001574] synonym: "inner circular muscle layer of esophagus" EXACT [FMA:67605] @@ -302676,6 +314373,8 @@ relationship: part_of UBERON:0002112 {source="MA"} ! smooth muscle of esophagus [Term] id: UBERON:0009961 name: esophagus smooth muscle longitudinal layer +subset: human_subset +subset: mouse_subset synonym: "esophagus smooth muscle longitudinal layer" RELATED [MA:0001575] synonym: "longitudinal muscle layer of esophagus" EXACT [FMA:63573] synonym: "outer longitudinal muscle layer of esophagus" EXACT [FMA:63573] @@ -302691,6 +314390,8 @@ relationship: part_of UBERON:0003832 {source="FMA"} ! esophagus muscle id: UBERON:0009962 name: excretory gland def: "A gland that discharges its secretion through a duct opening on an internal or external surface of the body, as a lacrimal gland." [Dorlands_Medical_Dictionary:MerckSource] +subset: human_subset +subset: mouse_subset synonym: "renal gland" NARROW [https://github.com/obophenotype/uberon/issues/1450] xref: BTO:0000431 is_a: UBERON:0002530 {source="BTO"} ! gland @@ -302733,6 +314434,8 @@ property_value: taxon_notes "They are found in all arachnids (with the exception id: UBERON:0009966 name: internodal tract def: "A conducting pathway in the conducting tissue of heart through which electrical activity spreads from the SA node to the AV node." [Wikipedia:Electrical_conduction_system_of_the_heart] +subset: human_subset +subset: mouse_subset synonym: "interatrial conduction tract" EXACT [] synonym: "internodal conduction tract" EXACT [] synonym: "internodal fasciculus" EXACT [FMA:9479] @@ -302748,6 +314451,8 @@ property_value: editor_note "include 3 subtypes?" xsd:string id: UBERON:0009967 name: spleen venous sinus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "sinus lienalis" EXACT OMO:0003011 [FMA:TA] synonym: "sinus splenicus" EXACT OMO:0003011 [FMA:TA] synonym: "splenic sinus" EXACT [FMA:62815] @@ -302766,6 +314471,8 @@ relationship: seeAlso UBERON:0003910 ! splenic sinusoid [Term] id: UBERON:0009968 name: primitive superior sagittal sinus +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001527 xref: EHDAA:9876 xref: EMAPA:18636 @@ -302778,6 +314485,8 @@ property_value: editor_note "consider merging into developed structure" xsd:stri [Term] id: UBERON:0009969 name: statoacoustic epithelium +subset: human_subset +subset: mouse_subset synonym: "stato-acoustic epithelium" EXACT [FMA:64804] xref: FMA:64804 is_a: UBERON:0006934 {source="FMA"} ! sensory epithelium @@ -302787,6 +314496,8 @@ id: UBERON:0009970 name: epithelium of pancreatic duct def: "An epithelium that is part of a pancreatic duct." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "pancreatic duct epithelium" EXACT [FMA:67681] synonym: "pancreatic ductal epithelium" EXACT [FMA:67681] xref: EFO:0002556 @@ -302804,6 +314515,8 @@ property_value: editor_note "in EHDAA2, the embryonic pancreatic ducts (dorsal, id: UBERON:0009971 name: principal gastric gland def: "One of the gastric glands that secretes the hydrochloric acid of the gastric juice[Stedman's]." [http://www.drugs.com/dict/acid-gland.html, MP:0003892] +subset: human_subset +subset: mouse_subset synonym: "acid gland" EXACT [http://www.drugs.com/dict/acid-gland.html] synonym: "gastric follicle" RELATED [MP:0003892] synonym: "gastric gland" BROAD [MP:0003892] @@ -302821,6 +314534,8 @@ property_value: external_ontology_notes "FMA has this as part of both the fundus id: UBERON:0009972 name: ureteropelvic junction def: "The junction between the ureter and the renal pelvis of the kidney." [MP:0011487] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "pelviureteric junction" EXACT [FMA:15898] synonym: "pelvoureteric junction" EXACT [] @@ -302842,6 +314557,8 @@ relationship: part_of UBERON:0001008 {source="MP"} ! renal system id: UBERON:0009973 name: ureterovesical junction def: "The valve-like structure found at the site of entry of the ureter into the urinary bladder, normally displays an oblique angulation through the detrusor to avoid reflux of urine up the ureters and the kidney." [MP:0011488] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "vesico-ureteral junction" EXACT [MA:0003020] synonym: "vesico-ureteric junction" EXACT [] @@ -302865,6 +314582,8 @@ relationship: part_of UBERON:0001008 {source="MP"} ! renal system id: UBERON:0009974 name: lumen of Rathke's pouch def: "An anatomical cavity that surrounded_by a Rathke's pouch." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "Rathkes pouch invagination" NARROW [EHDAA2:0004138] xref: EHDAA2:0004138 xref: EMAPA:25037 @@ -302879,6 +314598,8 @@ relationship: surrounded_by UBERON:0012287 {source="EHDAA2-modified"} ! Rathkes [Term] id: UBERON:0009975 name: remnant of lumen of Rathke's pouch +subset: human_subset +subset: mouse_subset synonym: "adenohypophysis invagination" RELATED [EHDAA2:0004139] xref: EHDAA2:0004139 is_a: UBERON:0005082 {source="EHDAA2"} ! tube lumen @@ -302890,6 +314611,8 @@ property_value: editor_note "requires review" xsd:string id: UBERON:0009976 name: hypothalamo-hypophyseal system def: "An intrinsic circulatory network that transports hormones from the median eminence of the hypothalamus to the adenohypophysis." [ISBN:0471888893, Wikipedia:Hypophyseal_portal_system] +subset: human_subset +subset: mouse_subset synonym: "hypophyseal portal system" EXACT [Wikipedia:Hypophyseal_portal_system] synonym: "hypothalamic hypophyseal portal system" EXACT [ISBN:0471888893] synonym: "hypothalamo hypophyseal system" RELATED [MESH:A06.407.747.357] @@ -302918,6 +314641,8 @@ property_value: taxon_notes "in lampreys and teleost hormones enter the adenohyp id: UBERON:0009977 name: natal tooth def: "Predeciduous teeth present at birth. They may be well formed and normal or may represent hornified epithelial structures without roots. They are found on the gingivae over the crest of the ridge and arise from accessory buds of the dental lamina ahead of the deciduous buds or from buds of the accessory dental lamina. (From Jablonski, Dictionary of Dentistry, 1992)." [MESH:A14.254.860.700.500] +subset: human_subset +subset: mouse_subset synonym: "natal teeth" EXACT OMO:0003004 [GAID:1267] synonym: "natal tooth" RELATED [GAID:1267] xref: GAID:1267 @@ -302929,6 +314654,8 @@ id: UBERON:0009978 name: epicondyle comment: grouping class that collected the entepicondyles and epicondyles icondyles of humerus and femur subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "epicondylus" RELATED OMO:0003011 [Wikipedia:Epicondyle] xref: FMA:75435 xref: galen:Epicondyle @@ -302943,6 +314670,8 @@ property_value: has_relational_adjective "epicondylar" xsd:string id: UBERON:0009979 name: condyle def: "An articular prominence of a bone, typically present in pairs, resembling a pair of knuckles. Examples: Condyle of humerus, condyle of femur." [http://www.merriam-webster.com/dictionary/condyle, PHENOSCAPE:ad] +subset: human_subset +subset: mouse_subset synonym: "condylus" EXACT OMO:0003011 [Wikipedia:Condyle_(anatomy)] xref: FMA:75434 xref: galen:Condyle @@ -302962,6 +314691,8 @@ id: UBERON:0009980 name: condyle of femur def: "A condyle that is part of a distal epiphysis of femur." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "condylus femoralis" EXACT [] synonym: "condylus femoris" EXACT [] synonym: "femoral condyle" EXACT [] @@ -302985,6 +314716,8 @@ id: UBERON:0009984 name: medial condyle of femur def: "The medial condyle is one of the two projections on the lower extremity of femur. The medial condyle is larger than the lateral (outer) condyle due to more weight bearing caused by the center of gravity being medial to the knee. On the posterior surface of the condyle the linea aspera (a ridge running down the posterior shaft of the femur) turns into the medial supracondylar ridge. The outermost protrusion on the medial surface of the medial condyle is referred to as the 'medial epicondyle' and can be palpated by running fingers medially from the patella with the knee in flexion." [Wikipedia:Medial_condyle_of_femur] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "c. medialis femoris" RELATED OMO:0003011 [Wikipedia:Medial_condyle_of_femur] synonym: "condylus medialis femoris" EXACT OMO:0003011 [FMA:32858, FMA:TA] synonym: "medial condyle of the femur" RELATED [Wikipedia:Medial_condyle_of_femur] @@ -303003,6 +314736,8 @@ id: UBERON:0009985 name: lateral condyle of femur def: "The lateral condyle is one of the two projections on the lower extremity of femur. It is the more prominent and is the broader both in its antero-posterior and transverse diameters." [Wikipedia:Lateral_condyle_of_femur] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "c. lateralis femoris" RELATED OMO:0003011 [Wikipedia:Lateral_condyle_of_femur] synonym: "condylus lateralis femoris" EXACT OMO:0003011 [FMA:32859, FMA:TA] synonym: "lateral condyle of the femur" RELATED [Wikipedia:Lateral_condyle_of_femur] @@ -303020,6 +314755,8 @@ id: UBERON:0009986 name: lateral epicondyle of femur def: "The lateral epicondyle of the femur, smaller and less prominent than the medial epicondyle, gives attachment to the fibular collateral ligament of the knee-joint. Directly below it is a small depression from which a smooth well-marked groove curves obliquely upward and backward to the posterior extremity of the condyle." [Wikipedia:Lateral_epicondyle_of_the_femur] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "e. lateralis femoris" RELATED OMO:0003011 [Wikipedia:Lateral_epicondyle_of_the_femur] synonym: "epicondylus lateralis (femur)" EXACT [FMA:32867] synonym: "epicondylus lateralis femoris" EXACT OMO:0003011 [FMA:32867, FMA:TA] @@ -303042,6 +314779,8 @@ id: UBERON:0009987 name: medial epicondyle of femur def: "The medial epicondyle of the femur is a bony protrusion located on the medial side of the bone's distal end. Located above the medial condyle, it bears an elevation, the adductor tubercle, which serves for the attachment of the superficial part, or 'tendinous insertion', of the adductor magnus. This tendinous part here forms an intermuscular septum which forms the medial separation between the thigh's flexors and extensors. Behind it, and proximally to the medial condyle is a rough impression which gives origin to the medial head of the Gastrocnemius." [Wikipedia:Medial_epicondyle_of_the_femur] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "epicondylus medialis (femur)" EXACT [FMA:32864] synonym: "epicondylus medialis femoris" RELATED OMO:0003011 [Wikipedia:Medial_epicondyle_of_the_femur] synonym: "medial femoral epicondyle" RELATED [Wikipedia:Medial_epicondyle_of_the_femur] @@ -303061,6 +314800,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e0/Gr id: UBERON:0009988 name: condyle of humerus def: "The distal end of the humerus, including the trochlea, capitulum and the olecranon, coronoid and radial fossae." [http://www.medilexicon.com/medicaldictionary.php?t=19715] +subset: human_subset +subset: mouse_subset synonym: "condylus humeri" EXACT OMO:0003011 [] synonym: "humeral condyle" EXACT [FMA:23377] xref: FMA:23377 @@ -303078,6 +314819,8 @@ property_value: taxon_notes "As in the N.A., the Condylus humeri is the whole di id: UBERON:0009989 name: condyle of tibia def: "One of the lateral or medial condyles of the tibia." [Wikipedia:Tibial_condyle] +subset: human_subset +subset: mouse_subset synonym: "tibial condyle" EXACT [AAO:0000899] xref: AAO:0000899 xref: SCTID:182062002 @@ -303095,6 +314838,8 @@ id: UBERON:0009990 name: medial condyle of tibia def: "The medial condyle is the medial portion of the upper extremity of tibia. It is the site of insertion for the Semimembranosus muscle[WP]." [Wikipedia:Medial_condyle_of_tibia] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "c. medialis tibiae" RELATED OMO:0003011 [Wikipedia:Medial_condyle_of_tibia] synonym: "condylus medialis (tibia)" EXACT [FMA:35445] synonym: "condylus medialis tibiae" EXACT OMO:0003011 [FMA:35445, FMA:TA] @@ -303114,6 +314859,8 @@ id: UBERON:0009991 name: lateral condyle of tibia def: "The lateral condyle is the lateral portion of the upper extremity of tibia. It serves as the insertion for the Biceps femoris muscle[WP]." [Wikipedia:Lateral_condyle_of_tibia] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "c. lateralis tibiae" RELATED OMO:0003011 [Wikipedia:Lateral_condyle_of_tibia] synonym: "condylus lateralis (tibia)" EXACT [FMA:35448] synonym: "condylus lateralis tibiae" EXACT OMO:0003011 [FMA:35448, FMA:TA] @@ -303129,6 +314876,8 @@ id: UBERON:0009992 name: cranial sensory ganglion def: "The ganglion found on the root of each cranial nerve, containing the cell bodies of afferent (sensory) neurons." [http://medical-dictionary.thefreedictionary.com/cranial+sensory+ganglion] comment: ontology notes: has no subtypes in FMA +subset: human_subset +subset: mouse_subset synonym: "cranial nerve sensory ganglion" EXACT [FMA:5887] synonym: "ganglion sensorium cranialium" EXACT [FMA:5887] synonym: "ganglion sensorium nervi cranialis" EXACT OMO:0003011 [FMA:5887, FMA:TA] @@ -303141,6 +314890,8 @@ is_a: UBERON:0001800 {source="FMA"} ! sensory ganglion id: UBERON:0009993 name: primary chorionic villus def: "A chorionic villus that is a solid outgrowth of the cytotrophoblast that protrudes into the syncytiotrophoblast." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] +subset: human_subset +subset: mouse_subset xref: NCIT:C34261 xref: UMLS:C1514421 {source="ncithesaurus:Primary_Chorionic_Villus"} is_a: UBERON:0007106 {source="ncithesaurus"} ! chorionic villus @@ -303149,6 +314900,8 @@ is_a: UBERON:0007106 {source="ncithesaurus"} ! chorionic villus id: UBERON:0009994 name: secondary chorionic villus def: "A chorionic villus that is has a core of loose connective tissue, which in humans grows into the primary villi about the third week of development." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] +subset: human_subset +subset: mouse_subset xref: NCIT:C34291 xref: UMLS:C1519213 {source="ncithesaurus:Secondary_Chorionic_Villus"} is_a: UBERON:0007106 {source="ncithesaurus"} ! chorionic villus @@ -303157,6 +314910,8 @@ is_a: UBERON:0007106 {source="ncithesaurus"} ! chorionic villus id: UBERON:0009995 name: tertiary chorionic villus def: "Tertiary chorionic villi contain embryonic blood vessels that develop from mesenchymal cells in the loose connective tissue core. These blood vessels connect up with vessels that develop in the chorion and connecting stalk and begin to circulate embryonic blood about the third week of development in humans." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] +subset: human_subset +subset: mouse_subset xref: NCIT:C34310 xref: UMLS:C1515280 {source="ncithesaurus:Tertiary_Chorionic_Villus"} is_a: UBERON:0007106 {source="ncithesaurus"} ! chorionic villus @@ -303166,6 +314921,8 @@ id: UBERON:0010000 name: multicellular anatomical structure def: "An anatomical structure that has more than one cell as a part." [CARO:0010000] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "multicellular structure" EXACT [FBbt:00100313] xref: CARO:0010000 @@ -303184,6 +314941,8 @@ id: UBERON:0010001 name: cell cluster organ def: "A small cluster of cells of various types which form a discrete structure, largely delimited by a morphological boundary and whose components work together to make the whole structure capable of a specific function." [CARO:0010001] comment: Examples include arthropod sensilla. +subset: human_subset +subset: mouse_subset subset: upper_level xref: CARO:0010001 xref: FBbt:00007229 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} @@ -303196,6 +314955,8 @@ disjoint_from: UBERON:0014732 {source="CARO"} ! compound cell cluster organ id: UBERON:0010002 name: pulmonary neuroendocrine body def: "Corpuscular, organoid structures composed of PNECs, found as distinctive innervated clusters only within intrapulmonary airways, where they appear concentrated at airway branch points; NEBs reach from the basement membrane to the airway lumen and are thought to function as oxygen sensors." [MP:0010921] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "NEB" RELATED OMO:0003000 [MP:0010921] synonym: "pulmonary neuroepithelial body" EXACT [MP:0010921] @@ -303211,6 +314972,7 @@ relationship: part_of UBERON:8600018 ! neuroendocrine system id: UBERON:0010005 name: placental labyrinth villous def: "The vascularized and branched structures arising from the rodent trophoblast-derived epithelium that allow an increase its surface area for the efficient exchange of nutrients and wastes between the maternal and fetal circulation." [MP:0011522] +subset: mouse_subset subset: pheno_slim synonym: "placental labyrinth villi" RELATED OMO:0003004 [] synonym: "villous of placental labyrinth" EXACT [] @@ -303222,6 +314984,7 @@ relationship: part_of UBERON:0003946 {source="MP"} ! placenta labyrinth id: UBERON:0010006 name: placenta intervillous maternal lacunae def: "The spaces of the placenta occupied by maternal blood, into which the fetal labyrinth villi project." [MP:0011525] +subset: mouse_subset subset: pheno_slim is_a: UBERON:0002553 ! anatomical cavity is_a: UBERON:0012466 ! extraembryonic cavity @@ -303232,6 +314995,7 @@ relationship: part_of UBERON:0003946 {source="MP"} ! placenta labyrinth id: UBERON:0010007 name: placenta fetal blood space def: "The spaces of the placenta occupied by fetal blood, primarily within the fetal labyrinth villi." [MP:0011526] +subset: mouse_subset subset: pheno_slim is_a: UBERON:0002553 ! anatomical cavity is_a: UBERON:0012466 ! extraembryonic cavity @@ -303242,6 +315006,8 @@ relationship: part_of UBERON:0003946 {source="MP"} ! placenta labyrinth id: UBERON:0010008 name: placental cotyledon def: "Round structure consisting of chorionic villi[PMID]. A separation of the decidua basalis of the placenta, separated by placental septa. Each cotyledon consists of a main stem of a chorionic villus as well as its branches and subbranches. The cotyledons receive fetal blood from chorionic vessels, which branch off cotyledon vessels into the cotyledons, which, in turn, branch into capillaries. The cotyledons are surrounded by maternal blood, which can exchange oxygen and nutrients with the fetal blood in the capillaries[WP]." [PMID:19829370, Wikipedia:Placental_cotyledon] +subset: human_subset +subset: mouse_subset synonym: "cotyledon" BROAD [] synonym: "discoid placenta" RELATED [] synonym: "placenta cotyledon" EXACT [] @@ -303260,6 +315026,8 @@ property_value: taxon_notes "Rodents have a single cotyledon (called a discoid p id: UBERON:0010009 name: aggregate regional part of brain def: "A regional part of brain consisting of multiple brain regions that are not related through a simple volummetric part of hierarchy, e.g., basal ganglia[NIF]." [NLXANAT:20090509] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "set of nuclei of neuraxis" RELATED [FMA:256381] xref: NLXANAT:20090509 @@ -303275,6 +315043,8 @@ property_value: editor_note "May be obsoleted." xsd:string id: UBERON:0010010 name: basal nucleus of telencephalon def: "A group of neurons in the basal forebrain that has wide projections to the neocortex and is rich in acetylcholine and choline acetyltransferase. It undergoes degeneration in paralysis agitans and Alzheimer's disease." [BTO:0001480] +subset: human_subset +subset: mouse_subset synonym: "basal forebrain nucleus" RELATED [NeuroNames:275] synonym: "basal magnocellular nucleus" RELATED [NeuroNames:275] synonym: "basal magnocellular nucleus (substantia innominata)" EXACT [FMA:61887] @@ -303321,6 +315091,8 @@ id: UBERON:0010011 name: collection of basal ganglia def: "Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum." [BIRNLEX:826] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "basal ganglia" EXACT [FMA:84013] synonym: "basal ganglia set" EXACT [FMA:84013] @@ -303420,6 +315192,8 @@ relationship: part_of UBERON:0002108 ! small intestine id: UBERON:0010017 name: spiral valve of cystic duct def: "A series of crescentic folds of mucous membrane somewhat spirally arranged on the interior of the gallbladder and continuing into the cystic duct." [http://dictionary.reference.com/browse/spiral+valve, Wikipedia:Spiral_valves_of_Heister] +subset: human_subset +subset: mouse_subset synonym: "Heister's valve" EXACT [FMA:15855] synonym: "plica spiralis" EXACT OMO:0003011 [FMA:TA] synonym: "plica spiralis (ductus cysticus)" EXACT [FMA:15855] @@ -303468,6 +315242,8 @@ property_value: taxon_notes "The spiracle is still found in all cartilaginous fi id: UBERON:0010020 name: tubotympanic recess epithelium def: "The dorsal portion of the embryonic first endodermal pharyngeal pouch; it develops into the middle ear cavity." [ISBN:0124020607, VHOG:0001297] +subset: human_subset +subset: mouse_subset synonym: "tubotympanic recess" RELATED [VHOG:0001297] xref: EHDAA2:0004115 xref: EHDAA:6772 @@ -303488,6 +315264,8 @@ property_value: homology_notes "The tympanic cavity and auditory tube of an amni [Term] id: UBERON:0010021 name: dorsal part of pharyngeal pouch 1 +subset: human_subset +subset: mouse_subset synonym: "dorsal 1st branchial pouch" EXACT [] synonym: "dorsal branchial pouch 1 endoderm" RELATED [] synonym: "dorsal elongation of first pouch endoderm" RELATED [] @@ -303501,6 +315279,8 @@ property_value: development_notes "in humans, dorsal diverticulum deepens as the [Term] id: UBERON:0010022 name: ventral part of pharyngeal pouch 1 +subset: human_subset +subset: mouse_subset synonym: "ventral 1st branchial pouch" EXACT [] synonym: "ventral branchial pouch 1 endoderm" RELATED [] synonym: "ventral elongation of first pouch endoderm" RELATED [] @@ -303514,6 +315294,8 @@ property_value: development_notes "in humans, the ventral portion of pouches 1 a [Term] id: UBERON:0010023 name: dorsal part of pharyngeal pouch 2 +subset: human_subset +subset: mouse_subset synonym: "dorsal 2nd branchial pouch" EXACT [] synonym: "dorsal branchial pouch 2 endoderm" RELATED [] synonym: "dorsal elongation of second pouch endoderm" RELATED [] @@ -303527,6 +315309,8 @@ property_value: development_notes "in humans, persists as the tonsillar fossa - [Term] id: UBERON:0010024 name: ventral part of pharyngeal pouch 2 +subset: human_subset +subset: mouse_subset synonym: "ventral 2nd branchial pouch" EXACT [] synonym: "ventral branchial pouch 2 endoderm" RELATED [] synonym: "ventral elongation of second pouch endoderm" RELATED [] @@ -303540,6 +315324,8 @@ property_value: development_notes "in humans, the ventral portion of pouches 1 a [Term] id: UBERON:0010025 name: dorsal part of pharyngeal pouch 3 +subset: human_subset +subset: mouse_subset synonym: "cranial dorsal aspect of third dorsal pharyngeal pouch" RELATED [] synonym: "dorsal 3rd arch pharyngeal pouch endoderm" EXACT [EHDAA2:0000409] synonym: "dorsal 3rd branchial pouch" EXACT [] @@ -303558,6 +315344,8 @@ property_value: development_notes "Derivatives of the dorsal wings include the i [Term] id: UBERON:0010026 name: ventral part of pharyngeal pouch 3 +subset: human_subset +subset: mouse_subset synonym: "caudal ventral aspect of third dorsal pharyngeal pouch" RELATED [] synonym: "ventral 3rd arch pharyngeal pouch endoderm" EXACT [EHDAA2:0002173] synonym: "ventral 3rd branchial pouch" EXACT [] @@ -303576,6 +315364,8 @@ property_value: development_notes "The ventral wings fuse to form the cytoreticu [Term] id: UBERON:0010027 name: dorsal part of pharyngeal pouch 4 +subset: human_subset +subset: mouse_subset synonym: "dorsal 4th branchial pouch" EXACT [] synonym: "dorsal branchial pouch 4 endoderm" RELATED [] synonym: "dorsal pharyngeal pouch 4" EXACT [] @@ -303587,6 +315377,8 @@ relationship: part_of UBERON:0007125 ! pharyngeal pouch 4 [Term] id: UBERON:0010028 name: ventral part of pharyngeal pouch 4 +subset: human_subset +subset: mouse_subset synonym: "ventral 4th branchial pouch" EXACT [] synonym: "ventral branchial pouch 4 endoderm" RELATED [] synonym: "ventral pharyngeal pouch 4" EXACT [] @@ -303598,6 +315390,8 @@ relationship: part_of UBERON:0007125 ! pharyngeal pouch 4 [Term] id: UBERON:0010029 name: dorsal part of pharyngeal pouch 5 +subset: human_subset +subset: mouse_subset synonym: "dorsal 5th branchial pouch" EXACT [] synonym: "dorsal branchial pouch 5 endoderm" RELATED [] synonym: "dorsal pharyngeal pouch 5" EXACT [] @@ -303609,6 +315403,8 @@ relationship: part_of UBERON:0007126 ! pharyngeal pouch 5 [Term] id: UBERON:0010030 name: ventral part of pharyngeal pouch 5 +subset: human_subset +subset: mouse_subset synonym: "ventral 5th branchial pouch" EXACT [] synonym: "ventral branchial pouch 5 endoderm" RELATED [] synonym: "ventral pharyngeal pouch 5" EXACT [] @@ -303621,6 +315417,8 @@ relationship: part_of UBERON:0007126 ! pharyngeal pouch 5 id: UBERON:0010031 name: 6th arch mesenchyme def: "Mesenchyme that is part of a pharyngeal arch 6." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "6th branchial arch mesenchyme" RELATED [] synonym: "6th pharyngeal arch mesenchyme" EXACT [] synonym: "pharyngeal arch 6 mesenchyme" RELATED [] @@ -303636,6 +315434,8 @@ relationship: part_of UBERON:0003117 ! pharyngeal arch 6 id: UBERON:0010032 name: anterior part of tongue def: "The portion of the tongue in front of the terminal sulcus. At the apex, thin and narrow, it is directed forward against the lingual surfaces of the lower incisor teeth. It is derived primarily from the first pharyngeal arch." [Wikipedia:Anterior_tongue] +subset: human_subset +subset: mouse_subset synonym: "anterior 2/3 of the tongue" RELATED [Wikipedia:Anterior_tongue] synonym: "anterior 2/3 of tongue" RELATED [Wikipedia:Anterior_tongue] synonym: "anterior two thirds of the tongue" RELATED [Wikipedia:Anterior_tongue] @@ -303665,6 +315465,8 @@ property_value: external_ontology_notes "check NCIT" xsd:string {external_ontolo id: UBERON:0010033 name: posterior part of tongue def: "The Posterior tongue, or pharyngeal part, is the part of the tongue behind the terminal sulcus. At its root, it is directed backward, and connected with the hyoid bone by the Hyoglossi and Genioglossi muscles and the hyoglossal membrane; with the epiglottis by three folds (glossoepiglottic) of mucous membrane; with the soft palate by the glossopalatine arches; and with the pharynx by the Constrictores pharyngis superiores and the mucous membrane. It is derived primarily from the third pharyngeal arch. (The second arch has a substantial contribution during fetal development, but this later atrophies. The fourth arch may also contribute, depending upon how the boundaries of the tongue are defined.)." [Wikipedia:Posterior_tongue] +subset: human_subset +subset: mouse_subset synonym: "base of the tongue" RELATED [Wikipedia:Posterior_tongue] synonym: "base of tongue" EXACT [Wikipedia:Posterior_tongue] synonym: "pars posterior (dorsum linguae)" EXACT [FMA:54645] @@ -303695,6 +315497,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/4/4c/I id: UBERON:0010034 name: copula linguae def: "A single midventral prominence deriving from the ventral bases of pharyngeal arches 2, 3 and 4 - provides the covering of the posterior of the tongue //The furcula is at first separated from the tuberculum impar by a depression, but later by a ridge, the copula, formed by the forward growth and fusion of the ventral ends of the second, third, and part of the fourth branchial arches[WP]." [Wikipedia:Copula_linguae] +subset: human_subset +subset: mouse_subset synonym: "copula" EXACT [EHDAA2:0004611] synonym: "copula linguae" RELATED OMO:0003011 [Wikipedia:Copula_linguae] xref: EHDAA2:0004611 @@ -303711,6 +315515,7 @@ property_value: editor_note "add new term for Hypobranchial_eminence?" xsd:strin id: UBERON:0010036 name: anterior tegmental nucleus def: "A group of cells located ventral to the decussation of the superior cerebellar peduncle in the mouse ( Paxinos-2001 ) and rat ( Swanson-1998 )." [neuronames:1115] +subset: mouse_subset xref: BAMS:AT xref: BAMS:ATg xref: DMBA:17008 @@ -303727,6 +315532,8 @@ relationship: part_of UBERON:0001891 {source="ABA", source="MA"} ! midbrain id: UBERON:0010038 name: fundic gastric gland def: "The fundus glands (or fundic glands, or gastric glands) are found in the body and fundus of the stomach. They are simple tubes, two or more of which open into a single duct." [Wikipedia:Fundic_glands] +subset: human_subset +subset: mouse_subset synonym: "fundal gland" EXACT [] synonym: "fundus gland" EXACT [] synonym: "gastric fundal gland" EXACT [] @@ -303756,6 +315563,8 @@ name: food storage organ def: "An organ of the digestive tract that is capable of retaining and storing food." [https://orcid.org/0000-0002-6601-2165] subset: functional_classification subset: grouping_class +subset: human_subset +subset: mouse_subset xref: BSA:0000123 xref: TADS:0000172 xref: TGMA:0001041 @@ -303768,6 +315577,8 @@ property_value: curator_notes "This is a very broad functionally defined groupin id: UBERON:0010040 name: stomach non-glandular epithelium def: "Am epithelium that lines the stomach which lacks glands. In addition to a glandular epithelium, the stomachs of some vertebrates also has a second region characterized by a nonglandular epithelium, devoid of gastric glands." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "stomach aglandular epithelium" EXACT [] synonym: "stomach squamous epithelium" RELATED [ISBN:0123813611] is_a: UBERON:0001276 ! epithelium of stomach @@ -303783,6 +315594,8 @@ property_value: taxon_notes "this region may develop from the base of the esopha [Term] id: UBERON:0010041 name: median ovary +subset: human_subset +subset: mouse_subset is_a: UBERON:0000992 ! ovary property_value: taxon_notes "In the primitive jawless fish, and some teleosts, there is only one ovary, formed by the fusion of the paired organs in the embryo" xsd:string {source="Wikipedia:Ovary#In_other_animals"} @@ -303790,6 +315603,8 @@ property_value: taxon_notes "In the primitive jawless fish, and some teleosts, t id: UBERON:0010042 name: 1st arch mesenchyme def: "Mesenchyme that is part of a pharyngeal arch 1." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesenchyme of 1st arch" EXACT [EMAPA:16128] xref: EMAPA:16128 is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region @@ -303801,6 +315616,8 @@ relationship: part_of UBERON:0004362 ! pharyngeal arch 1 id: UBERON:0010045 name: 1st arch maxillary mesenchyme def: "Mesenchyme that is part of a 1st arch maxillary component." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "maxillary component mesenchyme" RELATED [] synonym: "maxillary mesenchyme" RELATED [] synonym: "mesenchyme of maxillary component" EXACT [EMAPA:16391] @@ -303815,6 +315632,8 @@ relationship: part_of UBERON:0007238 ! 1st arch maxillary component id: UBERON:0010046 name: entire pharyngeal arch associated mesenchyme def: "The sum total of mesenchymal tissue in the pharyngeal arch region. Pharyngeal mesenchyme is undifferentiated, loose connective tissue derived mostly from mesoderm, and also contains ectodermally derived neural crest cells." [https://orcid.org/0000-0002-6601-2165, XAO:0004524] +subset: human_subset +subset: mouse_subset synonym: "associated mesenchyme of pharyngeal region" EXACT [EMAPA:16550] synonym: "entire branchial arch associated mesenchyme" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "pharyngeal arch associated mesenchyme" EXACT [EHDAA2:0001459] @@ -303831,6 +315650,8 @@ id: UBERON:0010047 name: oral gland alt_id: UBERON:0003293 def: "Gland of the epithelium lining the oral cavity. The most common are the salivary glands." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "buccal gland" NARROW [] synonym: "gland of oral opening" RELATED [] synonym: "gland of oral region" RELATED [] @@ -303889,6 +315710,8 @@ property_value: taxon_notes "Gradation varies in species. In the stingray, two d id: UBERON:0010052 name: mucosa of dorsum of tongue def: "A mucosa that is part of a dorsum of tongue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucosa of dorsal surface of tongue" EXACT [] xref: FMA:74871 xref: SCTID:245835003 @@ -303913,6 +315736,8 @@ relationship: never_in_taxon NCBITaxon:314146 ! Euarchontoglires id: UBERON:0010054 name: malleus cartilage element def: "A malleus endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:18229 is_a: UBERON:0015018 ! malleus endochondral element is_a: UBERON:0035131 ! auditory ossicle cartilage element @@ -303925,6 +315750,8 @@ relationship: develops_from UBERON:0006262 ! malleus pre-cartilage condensation id: UBERON:0010055 name: stapes cartilage element def: "A stapes endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:18230 is_a: UBERON:0011607 {source="http://people.eku.edu/ritchisong/342notes4.htm"} ! hyomandibular cartilage is_a: UBERON:0015016 ! stapes endochondral element @@ -303941,6 +315768,8 @@ property_value: taxon_notes "The stapes is homologous to the hyomandibula. In th id: UBERON:0010056 name: future tongue def: "A compound organ that has the potential to develop into a tongue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000696 xref: EHDAA:2951 is_a: UBERON:0003103 {source="EHDAA2"} ! compound organ @@ -303954,6 +315783,8 @@ relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0010057 name: hypopharyngeal eminence +subset: human_subset +subset: mouse_subset synonym: "hypobranchial eminence" EXACT [EMAPA:17352, OBOL:automatic] xref: EHDAA2:0000799 xref: EMAPA:17352 @@ -303965,6 +315796,8 @@ relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue [Term] id: UBERON:0010059 name: hypoglossal cord +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004610 is_a: UBERON:0002036 {source="EHDAA2"} ! striated muscle tissue relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue @@ -303973,6 +315806,8 @@ relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue id: UBERON:0010060 name: pharyngeal opening of pharyngotympanic tube def: "On the lateral wall of the nasal part of the pharynx is the pharyngeal opening of auditory tube (pharyngeal ostium), somewhat triangular in shape, and bounded behind by a firm prominence, the torus or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane." [Wikipedia:Pharyngeal_opening_of_auditory_tube] +subset: human_subset +subset: mouse_subset synonym: "ostium pharyngeum tubae auditivae" EXACT OMO:0003011 [FMA:TA] synonym: "ostium pharyngeum tubae auditivae" RELATED OMO:0003011 [Wikipedia:Pharyngeal_opening_of_auditory_tube] synonym: "ostium pharyngeum tubae auditoriae" EXACT OMO:0003011 [FMA:TA] @@ -303997,6 +315832,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1b/Gr [Term] id: UBERON:0010061 name: lumen of nasopharynx +subset: human_subset +subset: mouse_subset synonym: "nasopharyngeal luman" EXACT [] synonym: "nasopharynx cavity" EXACT [] synonym: "nasopharynx lumen" EXACT [FMA:55094] @@ -304008,6 +315845,8 @@ relationship: part_of UBERON:0001731 ! cavity of pharynx [Term] id: UBERON:0010062 name: pharyngotympanic tube epithelium +subset: human_subset +subset: mouse_subset synonym: "auditory tube epithelium" EXACT [EHDAA2:0004117] synonym: "eustachian tube epithelium" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EHDAA2:0004117 @@ -304024,6 +315863,8 @@ relationship: part_of UBERON:0002393 {source="cjm"} ! pharyngotympanic tube [Term] id: UBERON:0010063 name: tympanic cavity epithelium +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004116 is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac @@ -304037,6 +315878,8 @@ relationship: part_of UBERON:0001756 {source="EHDAA2"} ! middle ear id: UBERON:0010064 name: open anatomical space def: "An anatomical space with at least one opening to another space or the exterior." [AEO:0000221] +subset: human_subset +subset: mouse_subset xref: AEO:0000221 xref: EHDAA2:0004616 is_a: UBERON:0000464 ! anatomical space @@ -304049,6 +315892,8 @@ relationship: part_of RO:0002577 ! system [Term] id: UBERON:0010065 name: auditory meatus epithelium +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004114 is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube is_a: UBERON:0005911 ! endo-epithelium @@ -304061,6 +315906,8 @@ relationship: part_of UBERON:0001691 {source="EHDAA2"} ! external ear id: UBERON:0010066 name: tympanic plate def: "The tympanic part of the temporal bone is a curved plate of bone lying below the squama and in front of the mastoid process." [Wikipedia:Tympanic_part_of_the_temporal_bone] +subset: human_subset +subset: mouse_subset synonym: "ectotympanic" RELATED [Wikipedia:Ectotympanic] synonym: "ectotympanic bone" RELATED [Wikipedia:Ectotympanic] synonym: "pars tympanica" RELATED [Wikipedia:Tympanic_part_of_the_temporal_bone] @@ -304083,6 +315930,8 @@ property_value: editor_note "TODO distinguish ecto- and ento- tympanics" xsd:str id: UBERON:0010069 name: outer epithelial layer of tympanic membrane def: "A portion of the external acoustic meatus epithelium which makes up the outer (cuticular) layer of the tympanic membrane." [https://orcid.org/0000-0002-6601-2165, PMID:11237469] +subset: human_subset +subset: mouse_subset synonym: "cuticular layer of tympanic membrane" EXACT [FMA:56819] synonym: "cuticular stratum of tympanic membrane" EXACT [FMA:56819] synonym: "outer cuticular layer of tympanic membrane" EXACT [FMA:56819] @@ -304102,6 +315951,8 @@ relationship: part_of UBERON:0001352 ! external acoustic meatus id: UBERON:0010070 name: intermediate layer of tympanic membrane def: "The intermediate fibrous layer of the tympanic membrane." [https://sourceforge.net/tracker/?func=detail&aid=3468783&group_id=76834&atid=1205376, PMID:11237469] +subset: human_subset +subset: mouse_subset synonym: "connective tissue layer of tympanic membrane" EXACT [FMA:56830] synonym: "fibrous layer of tympanic membrane" EXACT [FMA:56830] synonym: "fibrous stratum of tympanic membrane" EXACT [FMA:56830] @@ -304118,6 +315969,8 @@ property_value: external_ontology_notes "check MA" xsd:string {external_ontology id: UBERON:0010071 name: layer of tympanic membrane subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "tympanic membrane layer" EXACT [FMA:56732] xref: FMA:56732 is_a: UBERON:0000064 ! organ part @@ -304128,6 +315981,8 @@ property_value: taxon_notes "In mammals, this class groups together the two epit id: UBERON:0010074 name: chromaffin system def: "Organ system subdivision that consists primarily of chromaffin cells and their supporting structures." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "argentaffin system" RELATED [MESH:A06.224] synonym: "chromaffin tissue" RELATED [] xref: FMA:79645 @@ -304143,6 +315998,8 @@ property_value: taxon_notes "in adult cylostomes and teleosts, the interrenal bo id: UBERON:0010075 name: sacral neural crest def: "One of the 5 distinct and partially overlapping functional domains of the premigratory neural crest. The vagal and sacral neural crest cells develop into the ganglia of the enteric nervous system, also known as the parasympathetic ganglia." [http://www.ncbi.nlm.nih.gov/books/NBK10065/, XB:curator] +subset: human_subset +subset: mouse_subset xref: XAO:0004192 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -304152,6 +316009,8 @@ relationship: part_of UBERON:0002342 ! neural crest id: UBERON:0010076 name: network of trabecular spaces in bone tissue def: "Tissue cavity consisting of intercommunicating trabecular spaces in the cancellous bone." [FMA:259332] +subset: human_subset +subset: mouse_subset synonym: "trabecular network of bone tissue" EXACT [FMA:259332] synonym: "trabecular space network" RELATED [FMA:259332] xref: FMA:259332 @@ -304165,6 +316024,8 @@ relationship: part_of UBERON:0008867 ! trabecular network of bone id: UBERON:0010077 name: cuboidal epithelium def: "An epithelium consisting of cuboidal epithelial cells." [Wikipedia:Cuboidal_epithelium] +subset: human_subset +subset: mouse_subset xref: NCIT:C32415 xref: UMLS:C0682577 {source="ncithesaurus:Cuboidal_Epithelium"} xref: Wikipedia:Cuboidal_epithelium @@ -304175,6 +316036,8 @@ property_value: external_ontology_notes "in NCIT this is glandular" xsd:string { [Term] id: UBERON:0010078 name: optic choroid vascular plexus +subset: human_subset +subset: mouse_subset synonym: "capillary lamina of choroid" RELATED [XAO:0004176] synonym: "choriocapillaris" RELATED [XAO:0004176] synonym: "choroid vascular plexus" RELATED [] @@ -304198,6 +316061,8 @@ property_value: taxon_notes "The choroid of teleosts is a connective tissue laye id: UBERON:0010081 name: future common hepatic duct def: "An extrahepatic bile duct that has the potential to develop into a common hepatic duct." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000595 is_a: UBERON:0003703 ! extrahepatic bile duct is_a: UBERON:0003914 ! epithelial tube @@ -304212,6 +316077,8 @@ relationship: has_potential_to_develop_into UBERON:0001175 ! common hepatic duct id: UBERON:0010083 name: future dermis def: "Mesenchyme that has the potential to develop into a dermis." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000598 is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme @@ -304226,6 +316093,8 @@ property_value: editor_note "check development" xsd:string id: UBERON:0010084 name: future diaphragm def: "A structure that will develop into a diaphragm." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000599 is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure @@ -304239,6 +316108,8 @@ relationship: located_in UBERON:0002323 {source="EHDAA2"} ! coelemic cavity lume id: UBERON:0010090 name: future falx cerebri def: "A developing anatomical structure that has the potential to develop into a falx cerebri." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000608 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006598 ! presumptive structure @@ -304251,6 +316122,8 @@ relationship: has_potential_to_develop_into UBERON:0006059 ! falx cerebri id: UBERON:0010091 name: future hindbrain meninx def: "A multi-tissue structure that has the potential to develop into a meninx of hindbrain." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "future hindbrain meninges" EXACT [EHDAA2:0000610] xref: EHDAA2:0000610 is_a: UBERON:0004121 ! ectoderm-derived structure @@ -304266,6 +316139,8 @@ relationship: part_of UBERON:0002028 ! hindbrain id: UBERON:0010092 name: future metencephalon def: "A developing anatomical structure that has the potential to develop into a metencephalon." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000623 is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure @@ -304277,6 +316152,8 @@ relationship: part_of UBERON:0002028 ! hindbrain id: UBERON:0010096 name: future myelencephalon def: "A developing anatomical structure that has the potential to develop into a myelencephalon." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000640 is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure @@ -304288,6 +316165,8 @@ relationship: part_of UBERON:0002028 ! hindbrain id: UBERON:0010123 name: future facial nucleus def: "A gray matter that has the potential to develop into a facial nucleus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004639 is_a: UBERON:0002020 ! gray matter intersection_of: UBERON:0002020 ! gray matter @@ -304298,6 +316177,8 @@ relationship: has_potential_to_develop_into UBERON:0000127 ! facial nucleus id: UBERON:0010124 name: future inferior salivatory nucleus def: "A gray matter that has the potential to develop into a inferior salivatory nucleus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004643 is_a: UBERON:0002020 ! gray matter intersection_of: UBERON:0002020 ! gray matter @@ -304309,6 +316190,8 @@ property_value: editor_note "TODO - devfrom" xsd:string id: UBERON:0010125 name: future superior salivatory nucleus def: "A gray matter that has the potential to develop into a superior salivatory nucleus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004644 is_a: UBERON:0002020 ! gray matter intersection_of: UBERON:0002020 ! gray matter @@ -304319,6 +316202,8 @@ relationship: has_potential_to_develop_into UBERON:0002149 ! superior salivatory id: UBERON:0010126 name: future nucleus ambiguus def: "A gray matter that has the potential to develop into a nucleus ambiguus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004647 is_a: UBERON:0002020 ! gray matter intersection_of: UBERON:0002020 ! gray matter @@ -304329,6 +316214,8 @@ relationship: has_potential_to_develop_into UBERON:0001719 ! nucleus ambiguus id: UBERON:0010127 name: future dorsal motor nucleus of vagus def: "A gray matter that has the potential to develop into a dorsal motor nucleus of vagus nerve." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004650 is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0006598 ! presumptive structure @@ -304339,6 +316226,8 @@ relationship: has_potential_to_develop_into UBERON:0002870 ! dorsal motor nucleu id: UBERON:0010128 name: future pterygopalatine ganglion def: "A ganglion that has the potential to develop into a pterygopalatine ganglion." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "future Meckel ganglion" EXACT [MP:0008314, OBOL:automatic] synonym: "future Meckel's ganglion" EXACT [FMA:6965, OBOL:automatic] synonym: "future nasal ganglion" EXACT [MP:0008314, OBOL:automatic] @@ -304357,6 +316246,8 @@ relationship: part_of UBERON:0001808 {source="EHDAA2"} ! parasympathetic ganglio id: UBERON:0010129 name: femur cartilage element def: "A femur endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "femoral cartilage condensation" EXACT [EMAPA:17742] xref: EMAPA:17742 is_a: UBERON:0005254 ! upper leg mesenchyme @@ -304375,6 +316266,8 @@ property_value: editor_note "TODO - request EHDAA2" xsd:string id: UBERON:0010130 name: embryonic autopod plate def: "The distal elements of the developing limb of vertebrates that will give rise to the autopod (e.g. manus, pes, paw)." [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/1151, MP:0004576, UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "autopod plate" EXACT [] synonym: "limb plate" EXACT [] is_a: UBERON:0006598 ! presumptive structure @@ -304387,6 +316280,8 @@ relationship: has_potential_to_develop_into UBERON:0002470 ! autopod region id: UBERON:0010131 name: conducting tissue of heart def: "Any portion of cardiac muscle tissue that is part of the conducting system of heart or the Purkinje fibers." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "specialized conducting tissue of heart" EXACT [FMA:83378] synonym: "specialized muscle tissue of heart" EXACT [FMA:83378] xref: EHDAA2:0004528 @@ -304398,6 +316293,8 @@ id: UBERON:0010132 name: gastroduodenal artery def: "A small blood vessel in the abdomen that supplies blood directly to the pylorus (distal part of the stomach) and proximal part of the duodenum, and indirectly to the pancreatic head (via the anterior and posterior superior pancreaticoduodenal arteries)." [Wikipedia:Gastroduodenal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria gastroduodenalis" RELATED OMO:0003011 [Wikipedia:Gastroduodenal_artery] xref: EHDAA2:0000310 xref: EHDAA:8574 @@ -304416,6 +316313,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Gr id: UBERON:0010133 name: neuroendocrine gland def: "Any of the organized aggregations of cells that function as secretory or excretory organs and that release hormones in response to neural stimuli." [ISBN:0-683-40008-8, MP:0000631] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "neuroendocrine system gland" EXACT [] xref: MA:0000720 @@ -304430,6 +316329,8 @@ relationship: part_of UBERON:8600018 ! neuroendocrine system id: UBERON:0010134 name: secretory circumventricular organ def: "A circumventricular organ that is capable of secreting substances into the cerebrospinal fluid." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:35759 xref: MA:0002943 @@ -304444,6 +316345,8 @@ relationship: part_of UBERON:0000949 ! endocrine system id: UBERON:0010135 name: sensory circumventricular organ def: "A circumventricular organ that is capable of monitoring the levels of substances to the cerebrospinal fluid." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "humerosensory circumventricular organ" RELATED [] synonym: "humerosensory system" RELATED OMO:0003004 [NeuroNames:2856] @@ -304464,12 +316367,16 @@ relationship: part_of UBERON:0001032 ! sensory system id: UBERON:0010136 name: epithelial sheet def: "An epithelial sheet is a flat surface consisting of closely packed epithelial cells." [GO:0002011] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0010137 name: polarized epithelium def: "A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis." [GO:0001738] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000483 ! epithelium property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Epithelial-configurations" xsd:anyURI @@ -304477,6 +316384,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Epithelial- id: UBERON:0010141 name: primitive sex cord of indifferent gonad def: "A sex cord that is part of a indifferent gonad." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "indifferent sex cord" EXACT [] synonym: "primitive sex cords" EXACT [EHDAA2:0004051] xref: EHDAA2:0004051 @@ -304492,6 +316401,8 @@ property_value: curator_notes "note that this represents the indifferent structu id: UBERON:0010143 name: seminal vesicle fluid def: "A bodily secretion that is produced by a seminal vesicle." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "secretion of seminal vesicle" EXACT [FMA:62969] synonym: "seminal fluid" RELATED INCONSISTENT [] synonym: "seminal vesicle secretion" EXACT [FMA:62969] @@ -304515,6 +316426,8 @@ property_value: taxon_notes "constitutes 60-70 % of the ejaculate in humans[MP]" id: UBERON:0010145 name: paraurethral gland def: "The numerous mucous-secreting glands found in several female mammalian species (including rodents and humans) on the anterior wall of the vagina, around the lower end of the urethra, and possessing a common paraurethral duct which opens (on each side) near the external urethral orifice; they are homologous with the prostate gland in males, have highly variable anatomy, and are believed to be the source of the female ejaculate, a lubricating fluid with a similar consistency to male prostatic fluid that is expelled through the urethra during sexual stimulation; like the male prostate, these glands are susceptible to infection (skenitis), cyst development, and cancer." [MGI:anna, MP:0011793] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "female prostate" EXACT [MP:0011793, PMID:10668204, Wikipedia:Skene%27s_gland] synonym: "female urethral gland" BROAD [EMAPA:29653, MP:0011793] @@ -304548,6 +316461,8 @@ id: UBERON:0010146 name: paraurethral duct alt_id: UBERON:0035064 def: "The Skene's ducts are a pair of ducts leading from the Skene's glands to the surface of the vulva, to the left and right of the urethral opening." [Wikipedia:Skene%27s_ducts] +subset: human_subset +subset: mouse_subset synonym: "duct of paraurethral gland" EXACT [FMA:21860] synonym: "duct of Skene's gland" EXACT [FMA:21860] synonym: "ductus paraurethrales urethrae femininae" RELATED OMO:0003011 [Wikipedia:Skene%27s_ducts] @@ -304573,6 +316488,8 @@ id: UBERON:0010147 name: male accessory sex gland def: "Any gland, other than the gonad, associated with the genital tract, such as the ampulla of the ductus deferens and the bulbourethral, prostate and vesicular glands of the male." [BTO:0004798] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "male accessory gland" RELATED [BTO:0004798] synonym: "male accessory reproductive gland" RELATED [] @@ -304585,6 +316502,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0010148 name: mating plug def: "A gelatinous secretion used in the mating of some species. It is deposited by a male into a female genital tract and later hardens into a plug or glues the tract together." [Wikipedia:Mating_plug] +subset: human_subset +subset: mouse_subset synonym: "copulation plug" EXACT [Wikipedia:Mating_plug] synonym: "copulatory plug" EXACT [SPD:0000547] synonym: "sement" RELATED [Wikipedia:Mating_plug] @@ -304605,6 +316524,8 @@ relationship: present_in_taxon NCBITaxon:9443 ! Primates id: UBERON:0010150 name: duct of major vestibular gland def: "One of a pair of ducts leading from the Bartholin's glands to the surface of the vulva." [Wikipedia:Bartholin's_duct] +subset: human_subset +subset: mouse_subset synonym: "Bartholin's duct" RELATED INCONSISTENT [Wikipedia:Bartholin's_duct] synonym: "duct of greater vestibular gland" EXACT [FMA:20088] synonym: "greater vestibular gland duct" EXACT [FMA:20088] @@ -304621,6 +316542,8 @@ relationship: sexually_homologous_to UBERON:0010151 ! duct of bulbourethral glan id: UBERON:0010151 name: duct of bulbourethral gland def: "A duct that is part of a bulbo-urethral gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bulbourethral gland duct" EXACT [FMA:20091] synonym: "duct of bulbo-urethral gland" EXACT [FMA:20091] synonym: "ductus glandulae bulbourethralis" EXACT OMO:0003011 [FMA:TA] @@ -304636,6 +316559,8 @@ relationship: part_of UBERON:0002366 ! bulbo-urethral gland id: UBERON:0010152 name: skin mucus def: "A mucous secretion that is produced by glands in the epidermis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "epidermal mucus" RELATED [BTO:0005082] synonym: "skin mucous" RELATED [] is_a: UBERON:0000912 ! mucus @@ -304667,6 +316592,8 @@ relationship: part_of UBERON:0007358 {source="BTO"} ! abomasum id: UBERON:0010155 name: parietomastoid suture def: "Unites the mastoid process of the temporal with the region of the mastoid angle of the parietal[WP:Squamosal_suture]." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "parieto-mastoid suture of skull" EXACT [] synonym: "parietomastoid suture of skull" EXACT [FMA:52947] xref: FMA:52947 @@ -304679,6 +316606,8 @@ relationship: connects UBERON:0001678 ! temporal bone id: UBERON:0010156 name: sphenofrontal suture def: "The Sphenofrontal suture is the cranial suture between the sphenoid bone and the frontal bone." [Wikipedia:Sphenofrontal_suture] +subset: human_subset +subset: mouse_subset synonym: "frontosphenoid suture" EXACT [FMA:52938] synonym: "spheno-frontal suture" RELATED [] synonym: "sphenofrontal" RELATED [Wikipedia:Sphenofrontal_suture] @@ -304699,6 +316628,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gr id: UBERON:0010157 name: sphenoparietal suture def: "The Sphenoparietal suture is the cranial suture between the sphenoid bone and the parietal bone." [Wikipedia:Sphenoparietal_suture] +subset: human_subset +subset: mouse_subset synonym: "spheno-parietal suture" EXACT [] synonym: "sphenoparietal suture of skull" EXACT [FMA:52945] synonym: "sutura sphenoparietalis" RELATED OMO:0003011 [Wikipedia:Sphenoparietal_suture] @@ -304717,6 +316648,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gr id: UBERON:0010158 name: sphenozygomatic suture def: "The Sphenozygomatic suture is the cranial suture between the sphenoid bone and the zygomatic bone." [Wikipedia:Sphenozygomatic_suture] +subset: human_subset +subset: mouse_subset synonym: "sphenozygomatica suture of skull" EXACT [FMA:52956] synonym: "sutura sphenozygomatica" RELATED OMO:0003011 [Wikipedia:Sphenozygomatic_suture] xref: FMA:52956 @@ -304734,6 +316667,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gr id: UBERON:0010159 name: occipitomastoid suture def: "The occipitomastoid suture is the cranial suture between the occipital bone and the mastoid portion of the temporal bone. It is continuous with the lambdoidal suture." [Wikipedia:Occipitomastoid_suture] +subset: human_subset +subset: mouse_subset synonym: "occipito-mastoid suture" RELATED [Wikipedia:Occipitomastoid_suture] synonym: "occipitomastoid suture of skull" EXACT [FMA:52934] synonym: "sutura occipitomastoidea" RELATED OMO:0003011 [Wikipedia:Occipitomastoid_suture] @@ -304749,6 +316684,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/df/Oc id: UBERON:0010160 name: lumen of lymphatic vessel def: "An anatomical cavity that surrounded_by a lymphatic vessel." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lumen of lymphatic duct" EXACT [FMA:59681] synonym: "lymphatic vessel lumen" EXACT [FMA:59681] xref: FMA:59681 @@ -304762,6 +316699,8 @@ relationship: part_of UBERON:0001473 ! lymphatic vessel id: UBERON:0010161 name: lumen of blood vessel def: "An anatomical cavity that surrounded_by a blood vessel." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood vessel lumen" EXACT [] xref: FMA:312610 xref: SCTID:91747007 @@ -304775,6 +316714,7 @@ relationship: part_of UBERON:0001981 ! blood vessel id: UBERON:0010162 name: post-anal tail tip def: "The distal end of the tail." [http://orcid.org/0000-0002-6601-2165] +subset: mouse_subset subset: pheno_slim synonym: "end of tail" RELATED [MA:0002848] synonym: "tail tip" EXACT [MA:0002848] @@ -304791,6 +316731,8 @@ relationship: part_of UBERON:0007812 {source="MA"} ! post-anal tail id: UBERON:0010163 name: eyebrow def: "The eyebrow is an area of thick, delicate hairs above the eye that follows the shape of the lower margin of the brow ridges. Their main function is to protect the eye, but they are also important to human communication and facial expression. It is not uncommon for people to modify their eyebrows by means of hair addition or removal, make up, or piercings." [Wikipedia:Eyebrow] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: phenotype_rcn synonym: "supercilium" RELATED OMO:0003011 [Wikipedia:Eyebrow] @@ -304809,6 +316751,8 @@ property_value: external_ontology_notes "in NCIT, this is an 'eye appendage'" xs id: UBERON:0010164 name: collection of hairs def: "An anatomical cluster that composed_primarily_of a strand of hair." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hairs" EXACT [FMA:70752] synonym: "hairs set" EXACT [FMA:70752] synonym: "pili" EXACT OMO:0003011 [FMA:TA] @@ -304824,6 +316768,8 @@ relationship: has_quality PATO:0010001 ! disconnected id: UBERON:0010165 name: collection of hair on face def: "A collection of hairs that is part of a face." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn synonym: "facial hair" RELATED [] synonym: "facial hairs set" EXACT [FMA:70741] @@ -304838,6 +316784,8 @@ relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0010166 name: coat of hair +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: phenotype_rcn synonym: "coat" BROAD [] @@ -304861,6 +316809,8 @@ is_a: UBERON:0010164 ! collection of hairs id: UBERON:0010167 name: beard def: "The collection of hair that grows on the chin, cheeks and neck of human beings. Usually, only pubescent or adult males are able to grow beards. However, women with hirsutism may develop a beard. When differentiating between upper and lower facial hair, a beard specifically includes the moustache, which refers to hair above the upper lip and around it." [Wikipedia:Beard] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn xref: FMA:54240 xref: SCTID:256924005 @@ -304872,6 +316822,8 @@ relationship: posterior_to UBERON:0004089 ! midface id: UBERON:0010168 name: collection of eyelashes def: "A collection of hair on face that is part of a eyelash." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cilia" EXACT OMO:0003011 [FMA:TA] synonym: "eyelashes" EXACT [FMA:70742] synonym: "eyelashes set" EXACT [FMA:70742] @@ -304887,6 +316839,8 @@ relationship: has_member UBERON:0001702 ! eyelash id: UBERON:0010169 name: moustache def: "Facial hair grown on the outer surface of the upper lip. It may or may not be accompanied by a type of beard, a facial hair style grown and cropped to cover most of the lower half of the face." [Wikipedia:Moustache] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn synonym: "mustache" EXACT [] synonym: "set of hair of upper lip proper" RELATED [FMA:59652] @@ -304899,6 +316853,8 @@ relationship: part_of UBERON:0001709 ! upper jaw region [Term] id: UBERON:0010170 name: region of neural crest +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002342 ! neural crest property_value: external_definition "A cell population arising from the dorsolateral aspect of the central nervous system primordium during the segmentation period, and later migrating along stereotyped pathways to give rise to a diverse and well-defined set of cell types including pigment cells, peripheral neurons and glia, and head cartilage. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000045", ontology="TAO", source="ZFIN:curator"} @@ -304907,6 +316863,8 @@ property_value: external_definition "A cell population arising from the dorsolat id: UBERON:0010171 name: strand of hair of face def: "A strand of hair that is part of a face." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "face hair" EXACT [FMA:54360] synonym: "face hair strand" EXACT [] @@ -304923,6 +316881,8 @@ relationship: part_of UBERON:0001456 ! face id: UBERON:0010172 name: bulb of aorta def: "The portion of the left ventricular outflow tract delineated by the sinotubular ridge superiorly and the bases of the valve leaflets inferiorly; it comprises the aortic sinuses, the aortic valve leaflets, the commissures, and the interleaflet triangles." [MP:0011572] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "aorta bulb" EXACT [MP:0011575] synonym: "aortic bulb" EXACT [FMA:3740] @@ -304944,6 +316904,8 @@ property_value: external_definition "The dilated first part of the aorta contain id: UBERON:0010173 name: sinotubular junction def: "The point in the ascending aorta where the aortic sinuses end and the aorta becomes a tubular structure." [MP:0011572] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "sinotubular ridge" EXACT [MP:0011572] xref: EMAPA:37951 {source="MA:th"} @@ -304956,6 +316918,8 @@ relationship: part_of UBERON:0001496 {source="MP"} ! ascending aorta id: UBERON:0010174 name: Schweigger-Seidel sheath def: "A phagocytic sleeve that is part of a sheathed arteriole of the spleen, and is sometimes referred to as a splenic ellipsoid. It is a spindle-shaped thickening in the walls of the second part of the arterial branches forming the penicilli in the spleen." [PMCID:PMC3204613, Wikipedia:Schweigger-Seidel_sheath] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Schweigger-Seidel_sheath is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure @@ -304966,6 +316930,8 @@ relationship: part_of UBERON:0002106 ! spleen id: UBERON:0010175 name: nutrient foramen vein def: "A vein or veins draining a bone and emerging from a nutrient foramen." [http://www.medilexicon.com/medicaldictionary.php?t=97392] +subset: human_subset +subset: mouse_subset synonym: "nutrient vein" EXACT [FMA:50780] synonym: "vena nutricia" RELATED OMO:0003011 [] xref: FMA:50780 @@ -304978,6 +316944,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0010176 name: nutrient foramen artery def: "The medullary or nutrient artery, usually accompanied by one or two veins, sends branches upward and downward to the bone marrow, which ramify in the medullary membrane, and give twigs to the adjoining canals." [Wikipedia:Nutrient_artery] +subset: human_subset +subset: mouse_subset synonym: "a. nutricia" RELATED OMO:0003011 [Wikipedia:Nutrient_artery] synonym: "a. nutriens" RELATED OMO:0003011 [Wikipedia:Nutrient_artery] synonym: "aretria nutricia" RELATED OMO:0003011 [] @@ -304997,6 +316965,8 @@ id: UBERON:0010181 name: straight venules of kidney def: "The straight venules of kidney are branches from the plexuses at the apices of the medullary pyramids, formed by the terminations of the arteriae rectae. They run outward in a straight course between the tubes of the medullary substance, and joining, as above stated, the interlobular veins, form venous arcades; these in turn unite and form veins which pass along the sides of the pyramids. Contains fenestrated capillaries." [Wikipedia:Straight_venules_of_kidney] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "set of straight venules of kidney" EXACT [FMA:72007] synonym: "venae rectae" RELATED [Wikipedia:Straight_venules_of_kidney] synonym: "venulae rectae" RELATED [Wikipedia:Straight_venules_of_kidney] @@ -305018,6 +316988,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0010183 name: liver trabecula def: "A trabecula that is part of a liver." [GO:0060344, OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hepatic trabecula" RELATED [] synonym: "liver trabeculae" EXACT OMO:0003004 [] is_a: UBERON:0000440 ! trabecula @@ -305030,6 +317002,8 @@ relationship: part_of UBERON:0002107 ! liver id: UBERON:0010185 name: rete ovarii def: "A structure formed from the primary sex cords in females, counterpart of the rete testis in males." [Wikipedia:Rete_ovarii] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "rete ovarii of ovary" EXACT [MA:0003237] xref: EMAPA:17966 @@ -305049,6 +317023,8 @@ property_value: editor_note "todo" xsd:string id: UBERON:0010186 name: male urethral gland def: "Any of the numerous small mucous-secreting glands located in the wall of the penile urethra." [MGI:anna, MP:0011794] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "gland of Littre" EXACT [] synonym: "gland of male urethra" EXACT [] @@ -305071,6 +317047,8 @@ relationship: part_of UBERON:0001333 ! male urethra id: UBERON:0010187 name: female urethral gland def: "An urethral gland that is part of a female urethra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "female urethra gland" EXACT [] synonym: "gland of female urethra" EXACT [] synonym: "urethral gland (female)" EXACT [FMA:21444] @@ -305086,6 +317064,8 @@ relationship: part_of UBERON:0001334 ! female urethra id: UBERON:0010188 name: protuberance def: "A roughly circular bulge in a surface." [EHDAA2:0003250] +subset: human_subset +subset: mouse_subset xref: AEO:0000205 xref: EHDAA2:0003250 xref: FMA:82506 @@ -305095,6 +317075,8 @@ property_value: editor_note "requires review" xsd:string [Term] id: UBERON:0010189 name: right atrium venous valve +subset: human_subset +subset: mouse_subset synonym: "right venous valve" RELATED [EHDAA2:0001762] xref: EHDAA2:0001762 xref: EMAPA:17010 @@ -305111,6 +317093,8 @@ property_value: external_ontology_notes "part_of in EHDAA2. Only child in MA." x id: UBERON:0010190 name: pair of dorsal aortae def: "The paired arterial structures of the embryo that supplies each developing somite via efferent segmental arteries; the dorsal aortae articulate with the umbilical arteries, which return mixed blood to the villi of the chorion for reoxygenation." [ISBN:0-914294-08-3, MP:0004787] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "paired dorsal aortae" EXACT [EHDAA2:0000410] xref: EHDAA2:0000410 @@ -305124,6 +317108,8 @@ relationship: part_of UBERON:0010191 {source="EHDAA2"} ! aortic system [Term] id: UBERON:0010191 name: aortic system +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004512 is_a: UBERON:0011216 ! organ system subdivision relationship: in_taxon NCBITaxon:7742 ! Vertebrata @@ -305133,6 +317119,8 @@ relationship: part_of UBERON:0004571 {source="Wikipedia"} ! systemic arterial sy id: UBERON:0010192 name: genital artery def: "One of the laterally paired arteries that supply the gonads." [ISBN:0073040584, Wikipedia:Gonadal_artery] +subset: human_subset +subset: mouse_subset synonym: "gonadal artery" EXACT [] xref: Wikipedia:Gonadal_artery is_a: UBERON:0012254 ! abdominal aorta artery @@ -305145,6 +317133,8 @@ relationship: supplies UBERON:0000991 ! gonad id: UBERON:0010193 name: renal portal vein def: "A portal vein that empties into capillaries within the kidneys." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "renal portal veins" EXACT OMO:0003004 [ZFA:0000577] xref: TAO:0000577 xref: ZFA:0000577 @@ -305157,6 +317147,8 @@ property_value: function_notes "function not well understood." xsd:string {sourc id: UBERON:0010194 name: hepatic portal system def: "A portal system that begins in capillaries in the wall of the digestive tract and and runs as the hepatic portal vein to the liver." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "hepatic-portal system" EXACT [AAO:0010225] synonym: "portal system of liver" EXACT [] xref: AAO:0010225 @@ -305182,6 +317174,8 @@ property_value: taxon_notes "present in all classes of vertebrates except mammal id: UBERON:0010197 name: trunk of common carotid artery def: "The initial part of the entire common carotid artery ending with the point where the artery bifurcates into an external carotid artery and an internal carotid artery." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "common carotid arterial trunk" EXACT [FMA:69323] synonym: "common carotid artery" RELATED INCONSISTENT [EHDAA2:0000306] xref: EHDAA2:0000306 @@ -305193,6 +317187,8 @@ relationship: part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus id: UBERON:0010198 name: carotid duct def: "A segment of the embryonic dorsal aorta between points of juncture with the third and fourth arch arteries; it regresses early in development to allow the carotid axis to take its definitive appearance." [http://www.medilexicon.com/medicaldictionary.php?s=ductus+caroticus, MP:MP] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ductus caroticus" EXACT [EMAPA:17006] xref: EMAPA:17006 @@ -305209,6 +317205,8 @@ id: UBERON:0010199 name: bona-fide anatomical boundary def: "An anatomical boundary that corresponds to some physical discontinuity." [CARO:0001004] comment: One might argue that all boundaries are actually fiat in the sense that there must be some fiat element at a fine enough scale of granularity. This ontology choses to ignore this issue as below the level of granularity relevant to anatomy. (DOS121102) +subset: human_subset +subset: mouse_subset subset: upper_level xref: CARO:0001004 is_a: UBERON:0000466 {source="CARO"} ! immaterial anatomical entity @@ -305232,6 +317230,7 @@ relationship: part_of UBERON:0002540 {source="ZFA"} ! lateral line system id: UBERON:0010204 name: tail vasculature def: "A vasculature that is part of a post-anal tail." [OBOL:automatic] +subset: mouse_subset synonym: "post-vent vasculature" EXACT [ZFA:0005037] synonym: "tail vasculature" RELATED [ZFA:0005037] xref: TAO:0005037 @@ -305247,6 +317246,8 @@ property_value: external_ontology_notes "isa blood vessel in XAO" xsd:string {ex id: UBERON:0010205 name: mesencephalic vein def: "One of the several veins that drain the mesencephalon; the posterior ones are tributaries to the great cerebral vein; the lateral ones are tributaries to the basal vein. The main veins are: pontomesencephalic vein [TA] (vena pontomesencephalica [TA]), interpeduncular veins [TA] (venae interpedunculares [TA]), intercollicular vein [TA] (vena intercollicularis [TA]), and lateral mesencephalic vein [TA] (vena mesencephalica lateralis [TA])[MedLex]. The major vein of the midbrain, which crosses the midbrain medially to meet it's partner the mesencephalic artery[XAO]." [http://www.medilexicon.com/medicaldictionary.php?t=97378, XAO:0004174] +subset: human_subset +subset: mouse_subset synonym: "msv" RELATED [TAO:0005092] synonym: "vena mesencephalica" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae] synonym: "venae mesencephalicae" EXACT OMO:0003004 [http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae] @@ -305261,6 +317262,7 @@ property_value: editor_note "review this term, check taxon scope; note FMA has s id: UBERON:0010207 name: nictitating membrane def: "A fold of the mucous membrane of the conjunctiva in many animals. At rest, it is hidden in the medial canthus. It can extend to cover part or all of the cornea to help clean the cornea." [MESH:A13.660, Wikipedia:Nictitating_membrane] +subset: mouse_subset subset: pheno_slim synonym: "haw" RELATED [Wikipedia:Nictitating_membrane] synonym: "membrana nictitans" EXACT OMO:0003011 [Wikipedia:Nictitating_membrane] @@ -305294,6 +317296,8 @@ property_value: taxon_notes "The Calabar angwantibo (Arctocebus calabarensis, a id: UBERON:0010209 name: plica semilunaris of conjunctiva def: "The plica semilunaris is a small fold of bulbar conjunctiva on the medial canthus of the eye. It is loose, so that eye movements are not restricted." [Wikipedia:Plica_semilunaris_of_conjunctiva] +subset: human_subset +subset: mouse_subset synonym: "plica semilunaris (conjunctiva)" EXACT [FMA:59045] synonym: "plica semilunaris conjunctivae" RELATED OMO:0003011 [Wikipedia:Plica_semilunaris_of_conjunctiva] synonym: "plica semilunaris of the conjunctiva" RELATED [Wikipedia:Plica_semilunaris_of_conjunctiva] @@ -305312,6 +317316,8 @@ property_value: taxon_notes "It is the vestigial remnant of the nictitating memb id: UBERON:0010210 name: blood clot def: "A semisolid gelatinous mass of coagulated blood that consists of red blood cells, white blood cells, and platelets entrapped in a fibrin network." [BTO:0000102, Wikipedia:Thrombus] +subset: human_subset +subset: mouse_subset synonym: "clot" NARROW [] synonym: "coagulated blood" EXACT [] synonym: "fibrin clot" EXACT [] @@ -305334,6 +317340,8 @@ relationship: output_of GO:0007596 ! blood coagulation id: UBERON:0010211 name: granulation tissue def: "Highly vascularized tissue that replaces the initial fibrin clot in a wound. Vascularization is by ingrowth of capillary endothelium from the surrounding vasculature. The tissue is also rich in fibroblasts (that will eventually produce the fibrous tissue) and leucocytes." [BTO:0003257] +subset: human_subset +subset: mouse_subset xref: BTO:0003257 xref: MESH:D006097 is_a: UBERON:0002384 {source="BTO"} ! connective tissue @@ -305347,6 +317355,8 @@ relationship: participates_in GO:0042060 ! wound healing id: UBERON:0010212 name: laryngeal apparatus def: "Apparatus located between the lungs and the buccal cavity. This apparatus is composed of a pair of arytenoid cartilages that are supported by the cricoid ring." [AAO:0000267] +subset: human_subset +subset: mouse_subset synonym: "laryngeal cartilage system" EXACT [EHDAA2:0000904] xref: AAO:0000267 xref: EHDAA2:0000904 @@ -305360,6 +317370,8 @@ property_value: editor_note "check this. See also https://github.com/obophenotyp [Term] id: UBERON:0010213 name: laryngeal pre-cartilage condensation +subset: human_subset +subset: mouse_subset is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0010221 {source="EHDAA2-abstracted"} ! laryngeal associated mesenchyme @@ -305369,6 +317381,8 @@ relationship: part_of UBERON:0010212 {source="EHDAA2-abstracted"} ! laryngeal ap [Term] id: UBERON:0010214 name: cricoid pre-cartilage condensation +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000327 is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation @@ -305376,6 +317390,8 @@ is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation id: UBERON:0010215 name: arytenoid swellings def: "Paired primordial elevations, on either side of the embryonic larynx, within which the arytenoid cartilages are formed." [http://www.medilexicon.com/medicaldictionary.php?t=87317] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000146 is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005856 {source="EHDAA2"} ! developing mesenchymal condensation @@ -305386,12 +317402,16 @@ property_value: external_ontology_notes "EHDAA2 and EMAPA appear to be inconsist [Term] id: UBERON:0010219 name: thyroid pre-cartilage condensation +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004088 is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation [Term] id: UBERON:0010220 name: arytenoid pre-cartilage condensation +subset: human_subset +subset: mouse_subset synonym: "arytenoid swelling pre-cartilage condensation" EXACT [EMAPA:17387] xref: EHDAA2:0000144 xref: EMAPA:17387 @@ -305403,6 +317423,8 @@ relationship: develops_from UBERON:0010215 {source="EHDAA2"} ! arytenoid swellin id: UBERON:0010221 name: laryngeal associated mesenchyme comment: Many sources say: thyroid cartilage from arch 4 other laryngeal cartilage (cricoid/arytenoid) from 6? +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004085 is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue @@ -305415,6 +317437,8 @@ relationship: part_of UBERON:0008895 ! splanchnocranium [Term] id: UBERON:0010222 name: anatomical line between pupils +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "inter-pupillary line" EXACT [] synonym: "interpupillary line" EXACT [] @@ -305430,6 +317454,8 @@ relationship: part_of UBERON:0001456 ! face id: UBERON:0010223 name: left pupil def: "A pupil that is part of a left eye." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pupil of left eye" EXACT [FMA:58254] xref: FMA:58254 xref: SCTID:368597006 @@ -305444,6 +317470,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/e id: UBERON:0010224 name: right pupil def: "A pupil that is part of a right eye." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pupil of right eye" EXACT [FMA:58253] xref: FMA:58253 xref: SCTID:368575009 @@ -305458,6 +317486,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/e id: UBERON:0010225 name: thalamic complex def: "A nuclear complex which in mammals consists of four parts, the hypothalamus, epithalamus, ventral thalamus, and dorsal thalamus[WP,modified]." [Wikipedia:Thalamus#Thalamic_nuclei] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004469 xref: FMA:258745 is_a: UBERON:0007245 ! nuclear complex of neuraxis @@ -305468,6 +317498,8 @@ relationship: part_of UBERON:0001894 {source="EHDAA2"} ! diencephalon id: UBERON:0010227 name: future cardiac atrium def: "Multi-tissue structure that is part of the heart tube and will become the cardiac atrium." [ZFA:0001718] +subset: human_subset +subset: mouse_subset synonym: "presumptive atrium heart tube" EXACT [ZFA:0001718] synonym: "primordial atrium" EXACT [FMA:71005] synonym: "primordial cardiac atrium" EXACT [FMA:71005] @@ -305510,6 +317542,8 @@ relationship: existence_ends_during UBERON:0000113 ! post-juvenile adult stage id: UBERON:0010230 name: eyeball of camera-type eye def: "The core globe-shaped component of the camera-type eye." [UBERON:cjm] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bulbus oculi" EXACT [] synonym: "eye" RELATED INCONSISTENT [] @@ -305531,6 +317565,8 @@ property_value: curator_notes "See notes for camera-type eye" xsd:string [Term] id: UBERON:0010231 name: anatomical line between outer ears +subset: human_subset +subset: mouse_subset synonym: "inter-otic line" RELATED [] synonym: "inter-pinna line" RELATED [] synonym: "otic line" RELATED [] @@ -305544,6 +317580,8 @@ relationship: connects UBERON:0006617 ! left external ear [Term] id: UBERON:0010232 name: placodal ectoderm +subset: human_subset +subset: mouse_subset xref: FMA:293966 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -305554,6 +317592,8 @@ relationship: has_potential_to_develop_into UBERON:0005085 ! ectodermal placode id: UBERON:0010233 name: stroma of thyroid gland def: "The connective tissue that supports the lobules and follicles of the thyroid gland." [http://www.drugs.com/dict/stroma-of-thyroid-gland.html] +subset: human_subset +subset: mouse_subset synonym: "thyroid gland stroma" EXACT [FMA:86304] synonym: "thyroid stroma" EXACT [] xref: FMA:86304 @@ -305571,6 +317611,8 @@ id: UBERON:0010234 name: palatopharyngeus muscle def: "The palatopharyngeus or palatopharyngeal or pharyngopalatinus muscle is a long, fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the palatopharyngeal arch." [Wikipedia:Palatopharyngeus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "musculus palatopharyngeus" RELATED OMO:0003011 [Wikipedia:Palatopharyngeus_muscle] synonym: "palatopharyngeal muscle" EXACT [] synonym: "palatopharyngeus" EXACT [FMA:46666] @@ -305598,6 +317640,7 @@ property_value: structure_notes "It is separated from the palatoglossus muscle b id: UBERON:0010235 name: uvular muscle def: "The musculus uvulae (azygos uvulae) is a muscle of the soft palate. It arises from the posterior nasal spine of the palatine bones and from the palatine aponeurosis. It descends to be inserted into the uvula and functions to move and shape it. It is innervated by the pharyngeal branch of the vagus nerve via the pharyngeal plexus[WP]." [Wikipedia:Musculus_uvulae] +subset: human_subset synonym: "azygos uvulae" RELATED [Wikipedia:Musculus_uvulae] synonym: "m. uvulae" RELATED [Wikipedia:Musculus_uvulae] synonym: "musculus uvulae" RELATED [Wikipedia:Musculus_uvulae] @@ -305662,6 +317705,8 @@ relationship: part_of UBERON:0001567 ! cheek id: UBERON:0010241 name: molar gland comment: a variety of mammals have salivary glands variously terms upper molar/buccal gland - this class groups all of these +subset: human_subset +subset: mouse_subset synonym: "molar salivary gland" EXACT [FMA:59794] xref: FMA:59794 xref: SCTID:59637006 @@ -305671,6 +317716,8 @@ is_a: UBERON:0012102 ! buccal salivary gland id: UBERON:0010242 name: anterior buccal gland def: "The racemose, mucous or serous glands in the submucous tissue of the cheeks." [ISBN:0-683-40008-8, MP:0009519] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior buccal salivary gland" RELATED [] xref: MA:0002700 @@ -305682,6 +317729,8 @@ relationship: part_of UBERON:0001567 ! cheek id: UBERON:0010243 name: merocrine gland def: "An exocrine gland whose secretions are excreted via exocytosis from secretory cells into an epithelial-walled duct or ducts and thence onto a bodily surface or into the lumen; the gland releases its product and no part of the gland is lost or damaged." [MGI:anna, MP:0013544, Wikipedia:Merocrine] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: BTO:0002324 xref: MA:0003041 @@ -305696,6 +317745,7 @@ property_value: has_relational_adjective "merocrine" xsd:string id: UBERON:0010244 name: choroid tapetum lucidum def: "A tapetum lucidum that is part of the choroid. The choroidal tapetum lucidum lies immediately adjacent to the choriocapillaris and external to the retinal epithelium." [https://orcid.org/0000-0002-6601-2165, PMID:14738502, Wikipedia:Tapetum_lucidum#Classification] +subset: mouse_subset synonym: "choroidal tapetum lucidum" EXACT [] synonym: "tapetum choroideae" EXACT [BTO:0001828] xref: BTO:0001828 @@ -305713,6 +317763,7 @@ property_value: external_ontology_notes "we make the assumption that the BTO cla id: UBERON:0010245 name: retinal tapetum lucidum def: "A tapetum lucidum that is part of the retina, within the cytoplasm of the retinal epithelium." [https://orcid.org/0000-0002-6601-2165, PMID:14738502, Wikipedia:Tapetum_lucidum#Classification] +subset: mouse_subset xref: Wikipedia:Tapetum_lucidum#Classification is_a: UBERON:0004868 ! tapetum lucidum of camera-type eye intersection_of: UBERON:0004868 ! tapetum lucidum of camera-type eye @@ -305746,6 +317797,7 @@ id: UBERON:0010247 name: choroidal tapetum cellulosum def: "A choroid tapetum lucidum that consists of layers of cells containing organized, highly refractive crystals. These crystals are diverse in shape and makeup." [https://orcid.org/0000-0002-6601-2165, PMID:14738502, Wikipedia:Tapetum_lucidum#Classification] comment: The choroidal stroma adjacent to the tapetum lucidum contains numerous small blood vessels that penetrate the tapetal layer to form a single-layered capillary network, known as the choriocapillaris, on the surface of the tapetum. The tapetum cellulosum is thus interposed between the large branching vessels in the choroid and the single layer of the choriocapillaris beneath the retinal epithelium[PMID:14738502] +subset: mouse_subset synonym: "choroid tapetum cellulosum" EXACT [] xref: Wikipedia:Tapetum_lucidum#Classification is_a: UBERON:0010244 ! choroid tapetum lucidum @@ -305758,6 +317810,7 @@ relationship: present_in_taxon NCBITaxon:9989 {editor="cjm", source="PMID:147385 id: UBERON:0010248 name: choroidal tapetum fibrosum def: "A choroid tapetum lucidum that is an array of extracellular fibers." [https://orcid.org/0000-0002-6601-2165, PMID:14738502, Wikipedia:Tapetum_lucidum#Classification] +subset: mouse_subset synonym: "fibrous tapetum" RELATED [NCBITaxon:9845, PMID:14738502] xref: Wikipedia:Tapetum_lucidum#Classification is_a: UBERON:0010244 ! choroid tapetum lucidum @@ -305771,6 +317824,8 @@ id: UBERON:0010249 name: posterior meningeal artery def: "The posterior meningeal artery are small vessels which are branches of the ascending pharyngeal artery which supply the dura mater. It passes through the mastoid foramen before entering the cranium via the jugular foramen." [Wikipedia:Posterior_meningeal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria meningea posterior" RELATED OMO:0003011 [Wikipedia:Posterior_meningeal_artery] synonym: "meningeal branches of the ascending pharyngeal artery" RELATED [Wikipedia:Posterior_meningeal_artery] synonym: "posterior meningeal arteries" RELATED OMO:0003004 [Wikipedia:Posterior_meningeal_artery] @@ -305789,6 +317844,8 @@ id: UBERON:0010250 name: middle meningeal artery def: "The middle meningeal artery is typically the third branch of the first part (retromandibular part) of the maxillary artery; one of the two terminal branches of the external carotid artery. After branching off the maxillary artery in the infratemporal fossa, it runs through the foramen spinosum to supply the dura mater and the calvaria. The middle meningeal artery is the largest of the three (paired) arteries which supply the meninges, the others being the anterior meningeal artery and the posterior meningeal artery. In approximately half of subjects it branches into an accessory meningeal artery. The middle meningeal artery runs beneath the pterion. It is vulnerable to injury at this point, where the skull is thin. Rupture of the artery may give rise to an epidural hematoma." [Wikipedia:Middle_meningeal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria meningea media" RELATED OMO:0003011 [Wikipedia:Middle_meningeal_artery] xref: FMA:49711 xref: SCTID:278100005 @@ -305803,6 +317860,8 @@ id: UBERON:0010251 name: anterior meningeal artery def: "A meningeal branch to the dura mater arising from the anterior ethmoidal artery." [Wikipedia:Anterior_ethmoidal_artery#Branches] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "a. ethmoidalis anterior" RELATED OMO:0003011 [Wikipedia:Anterior_ethmoidal_artery] synonym: "anterior ethmoid arteries" RELATED [Wikipedia:Anterior_ethmoidal_artery] synonym: "anterior ethmoid artery" RELATED [Wikipedia:Anterior_ethmoidal_artery] @@ -305826,6 +317885,8 @@ property_value: editor_note "this needs checking as part of a general revision o id: UBERON:0010252 name: 1st arch mandibular mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a 1st arch mandibular mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000037 is_a: UBERON:0009584 ! 1st arch mandibular mesenchyme is_a: UBERON:0010259 {source="inferred"} ! 1st arch mesenchyme from neural crest @@ -305841,6 +317902,8 @@ relationship: part_of UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhomben id: UBERON:0010253 name: 1st arch maxillary mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a 1st arch maxillary mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000044 is_a: UBERON:0003104 {source="EHDAA2"} ! mesenchyme is_a: UBERON:0010045 ! 1st arch maxillary mesenchyme @@ -305856,6 +317919,8 @@ relationship: part_of UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhomben id: UBERON:0010254 name: 2nd arch mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a 2nd arch mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "branchial arch 2 mesenchyme from neural crest" RELATED [] synonym: "neural crest derived arch 2 mesenchyme" EXACT [] synonym: "pharyngeal arch 2 mesenchyme from neural crest" EXACT [] @@ -305877,6 +317942,8 @@ relationship: part_of UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhomben id: UBERON:0010255 name: 3rd arch mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a 3rd arch mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "3rd pharyngeal arch mesenchyme derived from neural crest" EXACT [VHOG:0000571] synonym: "branchial arch 3 mesenchyme from neural crest" RELATED [] synonym: "mesenchyme derived from neural crest of mesenchyme of 3rd arch" EXACT [EMAPA:16404] @@ -305901,6 +317968,8 @@ property_value: homology_notes "In all vertebrates, the pharyngeal apparatus dev id: UBERON:0010256 name: 4th arch mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a 4th arch mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "4th pharyngeal arch mesenchyme derived from neural crest" EXACT [VHOG:0000580] synonym: "branchial arch 4 mesenchyme from neural crest" RELATED [] synonym: "mesenchyme derived from neural crest of mesenchyme of 4th arch" EXACT [EMAPA:16772] @@ -305926,6 +317995,8 @@ property_value: homology_notes "In all vertebrates, the pharyngeal apparatus dev id: UBERON:0010257 name: 6th arch mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a 6th arch mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "branchial arch 6 mesenchyme from neural crest" RELATED [] synonym: "neural crest derived arch 6 mesenchyme" EXACT [] synonym: "pharyngeal arch 6 mesenchyme from neural crest" EXACT [] @@ -305946,6 +318017,8 @@ relationship: part_of UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhomben id: UBERON:0010258 name: mesenchyme from rhombencephalic neural crest def: "Mesenchyme that develops_from a rhombencephalon neural crest." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004423 is_a: UBERON:0007213 ! mesenchyme derived from head neural crest intersection_of: UBERON:0003104 ! mesenchyme @@ -305957,6 +318030,8 @@ relationship: part_of UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from id: UBERON:0010259 name: 1st arch mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a 1st arch mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "branchial arch 1 mesenchyme from neural crest" RELATED [] synonym: "mesenchyme derived from neural crest of mesenchyme of 1st arch" EXACT [EMAPA:16129] synonym: "neural crest derived arch 1 mesenchyme" EXACT [] @@ -305976,6 +318051,8 @@ relationship: part_of UBERON:0010042 ! 1st arch mesenchyme id: UBERON:0010260 name: umbilical blood vessel def: "One of the three blood vessels, usually one large umbilical vein and two small umbilical arteries, buried within Wharton's jelly, that transport blood to and from the placenta, where exchange between the mother and fetus takes place; the umbilical vein carries oxygenated, nutrient-rich blood from the placenta to the fetus, and the umbilical arteries carry deoxygenated, nutrient-depleted blood from the fetus to the placenta." [MP:0003230] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "allantoic vessel" EXACT [Hymans:Hymans] synonym: "umbilical cord blood vessel" EXACT [] @@ -305994,6 +318071,8 @@ relationship: overlaps UBERON:0002331 ! umbilical cord id: UBERON:0010262 name: operculum of brain def: "The most posterior portion of the inferior frontal gyrus of the frontal lobe in the brain. In an axial plane, the Sylvian fissure extends from the operculum posteriorly to divide the frontal from the temporal lobe. Broca's area is a notable part of the operculum, which plays a key role in conversation or speech production, reading and writing. Its vascular supply comes from the M3 branches of the middle cerebral artery[WP]." [Wikipedia:Operculum_(brain)] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "operculum" BROAD [HP:0100954] xref: SCTID:362351003 @@ -306060,6 +318139,8 @@ is_obsolete: true [Term] id: UBERON:0010269 name: filum terminale internum +subset: human_subset +subset: mouse_subset synonym: "internal part of filum terminale" EXACT [FMA:256524] xref: FMA:256524 xref: SCTID:315673007 @@ -306070,6 +318151,8 @@ relationship: part_of UBERON:0005443 {source="FMA"} ! filum terminale [Term] id: UBERON:0010270 name: filum terminale externum +subset: human_subset +subset: mouse_subset synonym: "external part of filum terminale" EXACT [FMA:256526] xref: FMA:256526 xref: SCTID:315573001 @@ -306081,6 +318164,7 @@ relationship: part_of UBERON:0005443 {source="FMA"} ! filum terminale id: UBERON:0010271 name: musculus retractor bulbi def: "Cranial nerve VI innervated; ventral and posterior to the eye." [AAO:0010122] +subset: mouse_subset synonym: "M. retractor bulbi" EXACT [] synonym: "retractor bulbi" EXACT [] synonym: "retractor bulbi muscle" EXACT [] @@ -306096,6 +318180,8 @@ property_value: taxon_notes "In most other mammals it also innervates the muscul id: UBERON:0010272 name: hyoid apparatus def: "A group of bones comprised of hyoid body and two pairs of cornua (i.e. greater cornua and lesser cornua), and lies just below the tongue, above the thyroid cartilage." [http://www.biology-online.org/dictionary/Hyoid_apparatus] +subset: human_subset +subset: mouse_subset synonym: "apparatus hyobranchialis" RELATED OMO:0003011 [] synonym: "apparatus hyoideus" RELATED [http://www.biology-online.org/dictionary/Hyoid_apparatus] synonym: "hyobranchial apparatus" RELATED [AAO:0000225] @@ -306116,6 +318202,8 @@ property_value: taxon_notes "In most mammals, including humans, the hyoid appara id: UBERON:0010273 name: zone of hyoid bone def: "A zone of bone organ that is part of a hyoid bone." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hyoid bone zone" EXACT [FMA:59494] xref: FMA:59494 xref: SCTID:119534005 @@ -306128,6 +318216,8 @@ relationship: part_of UBERON:0001685 ! hyoid bone id: UBERON:0010276 name: space in vertebral column def: "Any anatomical space that is part of a vertebral column." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "vertebral column opening" EXACT [AAO:0000700] synonym: "vertebral conduit" EXACT [] xref: AAO:0000700 @@ -306140,6 +318230,8 @@ relationship: part_of UBERON:0001130 ! vertebral column id: UBERON:0010277 name: mesocardium def: "The part of the embryonic mesentery which connects the embryonic heart with the body wall in front and the foregut behind." [http://medical-dictionary.thefreedictionary.com/mesocardium] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cardiac mesentery" RELATED [EMAPA:16212] xref: MA:0000098 @@ -306155,6 +318247,8 @@ property_value: has_relational_adjective "mesocardial" xsd:string id: UBERON:0010279 name: pericardial sinus def: "There are two Pericardial sinuses: transverse and oblique. The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium and is known as the oblique sinus. The passage between the venous and arterial mesocardiabi.e. , between the aorta and pulmonary artery in front and the superior vena cava behindbis termed the transverse sinus. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside. Can be used to pass ligature during cardiac surgery." [Wikipedia:Pericardial_sinus] +subset: human_subset +subset: mouse_subset synonym: "oblique pericardial" RELATED [Wikipedia:Pericardial_sinus] synonym: "oblique pericardial sinus" RELATED [Wikipedia:Pericardial_sinus] synonym: "oblique sinus" RELATED [Wikipedia:Pericardial_sinus] @@ -306172,6 +318266,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7e/Gr id: UBERON:0010283 name: oblique pericardial sinus def: "The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium.[WP,unvetted]." [Wikipedia:Pericardial_sinus] +subset: human_subset +subset: mouse_subset synonym: "oblique sinus of pericardial cavity" EXACT [FMA:77133] xref: FMA:77133 xref: Wikipedia:Pericardial_sinus @@ -306181,6 +318277,8 @@ is_a: UBERON:0010279 ! pericardial sinus id: UBERON:0010284 name: lacrimal punctum def: "A minute orifice on the summit of the papillae lacrimales, which is the commencement point of the lacrimal canaliculi." [Wikipedia:Lacrimal_punctum] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lacrimal point" RELATED [Wikipedia:Lacrimal_punctum] synonym: "lacrimal puncta" RELATED OMO:0003004 [Wikipedia:Lacrimal_punctum] @@ -306199,6 +318297,8 @@ id: UBERON:0010285 name: midbrain basal plate def: "Portion of tissue that is dorsolateral to the floor plate and part of the midbrain." [ZFA:0000761] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "basal plate midbrain" EXACT [TAO:0000761] synonym: "basal plate midbrain region" EXACT [ZFA:0000761] xref: DHBA:12322 @@ -306214,6 +318314,8 @@ relationship: part_of UBERON:0010286 {source="ZFA"} ! midbrain neural tube id: UBERON:0010286 name: midbrain neural tube def: "Portion of neural tube that gives rise to the midbrain." [ZFA:0007039] +subset: human_subset +subset: mouse_subset xref: TAO:0007039 xref: ZFA:0007039 is_a: UBERON:0000479 {source="ZFA"} ! tissue @@ -306225,6 +318327,8 @@ property_value: editor_note "we follow ZFA in temporally dividing midbrain NT fr [Term] id: UBERON:0010287 name: motor root of facial nerve +subset: human_subset +subset: mouse_subset synonym: "facial nerve motor root" EXACT [FMA:53419] synonym: "motor component of the VIIth (facial) nerve" EXACT [] synonym: "seventh cranial nerve motor root" EXACT [FMA:53419] @@ -306280,6 +318384,8 @@ property_value: taxon_notes "The distribution of scleral ossicles and scleral ca [Term] id: UBERON:0010291 name: layer of sclera +subset: human_subset +subset: mouse_subset xref: Wikipedia:Sclera#Histology is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0010313 ! neural crest-derived structure @@ -306289,6 +318395,8 @@ relationship: part_of UBERON:0001773 {source="cjm"} ! sclera id: UBERON:0010292 name: episcleral layer of eyeball def: "The episclera is the outermost layer of the sclera. It is composed of loose, fibrous, elastic tissue and attaches to Tenon's capsule. A vascular plexus is found between the conjunctiva and the sclera consisting of two layers of vessels, the superficial episcleral vessels and the deep episcleral vessels." [Wikipedia:Episcleral_layer] +subset: human_subset +subset: mouse_subset synonym: "episclera" EXACT [FMA:58362] synonym: "episcleral layer" EXACT [FMA:58362] synonym: "lamina episcleralis" EXACT OMO:0003011 [Wikipedia:Episcleral_layer] @@ -306303,6 +318411,8 @@ is_a: UBERON:0010291 {source="Wikipedia"} ! layer of sclera id: UBERON:0010293 name: suprachoroid lamina def: "On the external surface of the optic choroid is a thin membrane, the suprachoroid lamina, composed of delicate non-vascular lamellae-each lamella consisting of a network of fine elastic fibers among which are branched pigment cells." [Wikipedia:Suprachoroid_lamina] +subset: human_subset +subset: mouse_subset synonym: "fusca sclerae" RELATED [Wikipedia:Suprachoroid_lamina] synonym: "lamina fusca of sclera" RELATED [FMA:58368] synonym: "lamina fusca sclerae" RELATED OMO:0003011 [FMA:TA, Wikipedia:Suprachoroid_lamina] @@ -306325,6 +318435,8 @@ property_value: structure_notes "The spaces between the lamellae are lined by en id: UBERON:0010294 name: scleral endothelium def: "An endothelium that is part of a sclera." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001986 ! endothelium is_a: UBERON:0010291 {source="Wikipedia"} ! layer of sclera is_a: UBERON:0015808 ! eye epithelium @@ -306336,6 +318448,8 @@ relationship: part_of UBERON:0001773 ! sclera id: UBERON:0010295 name: substantia propria of sclera def: "A stroma that is part of a sclera." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "scleral stroma" EXACT [FMA:58365] synonym: "stroma of sclera" EXACT [FMA:58365] synonym: "subsantia propria" BROAD [] @@ -306391,6 +318505,8 @@ property_value: development_notes "The scleral ossicles [in reptiles]" xsd:strin id: UBERON:0010299 name: scleral mesenchyme def: "Mesenchyme surrounding the developing optic cup which develops into the sclera." [https://orcid.org/0000-0002-6601-2165, PMID:16496288] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: has_potential_to_develop_into UBERON:0001773 ! sclera @@ -306401,6 +318517,8 @@ property_value: development_notes "The mesenchyme surrounding the developing opt [Term] id: UBERON:0010300 name: epithelial scleral papilla layer +subset: human_subset +subset: mouse_subset synonym: "scleral papillae" EXACT [] is_a: UBERON:0000483 ! epithelium relationship: develops_in UBERON:0010299 ! scleral mesenchyme @@ -306424,6 +318542,8 @@ property_value: editor_note "May be obsoleted once added to insect ontology. Coo id: UBERON:0010303 name: extraembryonic epithelium def: "An epithelium that is part of a extraembryonic structure." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "extra-embryonic epithelium" EXACT [] is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005292 ! extraembryonic tissue @@ -306435,6 +318555,8 @@ relationship: part_of UBERON:0000478 ! extraembryonic structure id: UBERON:0010304 name: non-keratinized stratified squamous epithelium def: "Stratified squamous epithelium is a stratified squamous epithelium, the cells of which synthesizes but does not accumulate keratin. Examples: epithelium of vagina, epithelium of wall of esophagus." [FMA:45569, Wikipedia:Stratified_squamous_epithelium#Nonkeratinized] +subset: human_subset +subset: mouse_subset synonym: "epithelium stratificatum squamosum noncornificatum" EXACT [FMA:45569] synonym: "nonkeratinizing stratified squamous epithelium" EXACT [FMA:45569] synonym: "stratified squamous non-keratinized epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -306449,6 +318571,8 @@ id: UBERON:0010305 name: subdivision of conjunctiva def: "One of the three major regions of the conjunctiva." [Wikipedia:Conjunctiva#Gross_anatomy] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "conjunctiva region" EXACT [] synonym: "region of conjunctiva" EXACT [FMA:59023] xref: FMA:59023 @@ -306466,6 +318590,8 @@ id: UBERON:0010306 name: bulbar conjunctiva def: "The conjunctiva covering the anterior surface of the sclera and the surface epithelium of the cornea." [MP:0013402] comment: covers the eyeball, over the sclera. This region of the conjunctiva is tightly bound to the underlying sclera by Tenon's capsule and moves with the eyeball movements. +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ocular conjunctiva" EXACT [Wikipedia:Conjunctiva] xref: FMA:59024 @@ -306481,6 +318607,8 @@ relationship: has_quality PATO:0000964 ! transparent id: UBERON:0010307 name: conjunctival fornix def: "The space formed by the junction of the bulbar and palpebral portions of the conjunctiva, that of the upper lid being the superior conjunctival fornix (fornix conjunctivae superior) and that of the lower lid, the inferior conjunctival fornix (fornix conjunctivae inferior); the fornix is loose and flexible, allowing the free movement of the lids and eyeball." [MGI:anna] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "conjunctiva fornix" EXACT [MGI:anna] synonym: "forniceal conjunctiva" EXACT [MGI:anna] @@ -306520,6 +318648,7 @@ id: UBERON:0010310 name: nictitating membrane lamina def: "Thin cartilage element that stiffens the nictitating membrane." [PMID:16496288] comment: Morphology notes: Generally, the cartilage consists of a long narrow appendix which is followed by a variable crossbar[PMID:11325064] +subset: mouse_subset synonym: "cartilago intercipiens" EXACT [PMID:16496288] synonym: "nictitating membrane cartilage" EXACT [PMID:11325064] is_a: UBERON:0003933 ! cranial cartilage @@ -306547,6 +318676,8 @@ property_value: structure_notes "During contraction, the scleral sesamoid bone a id: UBERON:0010312 name: immature eye def: "Developing anatomical structure that develops into the eyeball and associated structures." [ZFA:0001678] +subset: human_subset +subset: mouse_subset synonym: "future eye" EXACT [] xref: TAO:0002201 xref: ZFA:0001678 @@ -306562,6 +318693,8 @@ id: UBERON:0010313 name: neural crest-derived structure def: "An anatomical structure that develops from the neural crest." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000061 ! anatomical structure @@ -306574,6 +318707,8 @@ id: UBERON:0010314 name: structure with developmental contribution from neural crest def: "An anatomical structure that has some part that develops from the neural crest." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: has_developmental_contribution_from UBERON:0002342 ! neural crest @@ -306583,6 +318718,8 @@ property_value: curator_notes "Grouping term for query purposes" xsd:string [Term] id: UBERON:0010316 name: germ layer / neural crest +subset: human_subset +subset: mouse_subset is_a: UBERON:0000479 {source="GO", source="ZFA"} ! tissue is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue @@ -306600,6 +318737,8 @@ consider: UBERON:0010313 id: UBERON:0010321 name: skeletal element of eye region def: "A skeletal element that is part of a orbital region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "eye skeleton" RELATED [] synonym: "ocular skeleton" RELATED [] synonym: "skeletal element of orbital region" RELATED [] @@ -306615,6 +318754,8 @@ relationship: part_of UBERON:0011156 ! facial skeleton id: UBERON:0010323 name: cranial skeletal system def: "Skeletal subdivision of the head including skull (cranium plus mandible), pharyngeal and/or hyoid apparatus." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000049] +subset: human_subset +subset: mouse_subset synonym: "cranial skeleton" NARROW [] synonym: "cranium" RELATED INCONSISTENT [ZFA:0000737] synonym: "osteocranium" NARROW [] @@ -306668,6 +318809,8 @@ is_obsolete: true id: UBERON:0010328 name: limb bud mesenchyme def: "Mesenchyme that is part of a limb bud." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010329 ! paired limb/fin bud mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0004347 ! limb bud @@ -306677,6 +318820,8 @@ relationship: part_of UBERON:0004347 ! limb bud id: UBERON:0010329 name: paired limb/fin bud mesenchyme def: "Mesenchyme that is part of a limb/fin bud." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010377 ! mesenchyme from somatopleure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0004357 ! paired limb/fin bud @@ -306687,6 +318832,8 @@ relationship: part_of UBERON:0004357 ! paired limb/fin bud id: UBERON:0010330 name: eyelid mesenchyme def: "Mesenchyme that is part of a developing eyelid." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:32759 is_a: UBERON:0003314 ! eye mesenchyme intersection_of: UBERON:0003104 ! mesenchyme @@ -306697,6 +318844,8 @@ relationship: part_of UBERON:0001711 ! eyelid id: UBERON:0010332 name: epithelium of handplate def: "An epithelium that is part of a handplate." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "handplate epithelium" EXACT [EHDAA2:0000730] xref: EHDAA2:0000730 xref: EMAPA:32630 @@ -306712,6 +318861,8 @@ relationship: part_of UBERON:0006875 ! embryonic handplate id: UBERON:0010333 name: extraembryonic membrane mesenchyme def: "Mesenchyme that is part of a extraembryonic membrane." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005292 ! extraembryonic tissue @@ -306724,6 +318875,8 @@ relationship: part_of UBERON:0005631 ! extraembryonic membrane id: UBERON:0010334 name: maxillary process mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a maxillary process mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004601 is_a: UBERON:0003104 {source="EHDAA2"} ! mesenchyme is_a: UBERON:0009526 ! maxillary process mesenchyme @@ -306739,6 +318892,8 @@ relationship: part_of UBERON:0009526 {source="EHDAA2"} ! maxillary process mesen id: UBERON:0010335 name: maxillary process mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a maxillary process mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004602 is_a: UBERON:0003104 {source="EHDAA2"} ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure @@ -306754,6 +318909,8 @@ relationship: part_of UBERON:0009526 {source="EHDAA2"} ! maxillary process mesen id: UBERON:0010336 name: mandibular process mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a mandibular process mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004603 is_a: UBERON:0003104 {source="EHDAA2"} ! mesenchyme is_a: UBERON:0006905 ! mandibular process mesenchyme @@ -306769,6 +318926,8 @@ relationship: part_of UBERON:0006905 {source="EHDAA2"} ! mandibular process mese id: UBERON:0010337 name: mandibular process mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a mandibular process mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004604 is_a: UBERON:0003104 {source="EHDAA2"} ! mesenchyme is_a: UBERON:0006904 ! head mesenchyme from mesoderm @@ -306784,6 +318943,8 @@ relationship: part_of UBERON:0006905 {source="EHDAA2"} ! mandibular process mese id: UBERON:0010338 name: 1st arch maxillary mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch maxillary mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000043 is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue is_a: UBERON:0010045 ! 1st arch maxillary mesenchyme @@ -306798,6 +318959,8 @@ relationship: part_of UBERON:0010045 {source="EHDAA2"} ! 1st arch maxillary mese id: UBERON:0010339 name: 1st arch mandibular mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch mandibular mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000036 is_a: UBERON:0003104 {source="EHDAA2"} ! mesenchyme is_a: UBERON:0009584 ! 1st arch mandibular mesenchyme @@ -306812,10 +318975,11 @@ relationship: part_of UBERON:0009584 {source="EHDAA2"} ! 1st arch mandibular mes id: UBERON:0010341 name: 1st arch mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesenchyme derived from head mesoderm of mesenchyme of 1st arch" EXACT [EMAPA:16130] xref: EMAPA:16130 is_a: UBERON:0003104 {source="EHDAA2"} ! mesenchyme -is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0010042 ! 1st arch mesenchyme is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme @@ -306828,6 +318992,8 @@ relationship: part_of UBERON:0010042 {source="EMAPA"} ! 1st arch mesenchyme id: UBERON:0010343 name: 2nd arch mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 2nd arch mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "branchial arch 2 mesenchyme from head mesenchyme" RELATED [] synonym: "head mesenchyme derived arch 2 mesenchyme" EXACT [] synonym: "mesenchyme derived from head mesoderm of mesenchyme of 2nd arch" EXACT [EMAPA:16280] @@ -306835,7 +319001,6 @@ synonym: "pharyngeal arch 2 mesenchyme from head mesenchyme" EXACT [] xref: EHDAA2:0000067 xref: EMAPA:16280 is_a: UBERON:0005689 ! 2nd arch mesenchyme -is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme @@ -306848,6 +319013,8 @@ relationship: part_of UBERON:0005689 {source="EHDAA2"} ! 2nd arch mesenchyme id: UBERON:0010344 name: 3rd arch mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 3rd arch mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "branchial arch 3 mesenchyme from head mesenchyme" RELATED [] synonym: "head mesenchyme derived arch 3 mesenchyme" EXACT [] synonym: "mesenchyme derived from head mesoderm of mesenchyme of 3rd arch" EXACT [EMAPA:16403] @@ -306855,7 +319022,6 @@ synonym: "pharyngeal arch 3 mesenchyme from head mesenchyme" EXACT [] xref: EHDAA2:0000082 xref: EMAPA:16403 is_a: UBERON:0005690 ! 3rd arch mesenchyme -is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme @@ -306868,6 +319034,8 @@ relationship: part_of UBERON:0005690 {source="EHDAA2"} ! 3rd arch mesenchyme id: UBERON:0010345 name: 4th arch mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 4th arch mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "branchial arch 4 mesenchyme from head mesenchyme" RELATED [] synonym: "head mesenchyme derived arch 4 mesenchyme" EXACT [] synonym: "mesenchyme derived from head mesoderm of mesenchyme of 4th arch" EXACT [EMAPA:16771] @@ -306875,7 +319043,6 @@ synonym: "pharyngeal arch 4 mesenchyme from head mesenchyme" EXACT [] xref: EHDAA2:0000097 xref: EMAPA:16771 is_a: UBERON:0005691 ! 4th arch mesenchyme -is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme @@ -306888,11 +319055,12 @@ relationship: part_of UBERON:0005691 {source="EHDAA2"} ! 4th arch mesenchyme id: UBERON:0010347 name: 6th arch mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 6th arch mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "branchial arch 6 mesenchyme from head mesenchyme" RELATED [] synonym: "head mesenchyme derived arch 6 mesenchyme" EXACT [] synonym: "pharyngeal arch 6 mesenchyme from head mesenchyme" EXACT [] xref: EHDAA2:0004078 -is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue is_a: UBERON:0010031 ! 6th arch mesenchyme is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme @@ -306905,6 +319073,8 @@ relationship: part_of UBERON:0010031 {source="EHDAA2"} ! 6th arch mesenchyme [Term] id: UBERON:0010348 name: hyoid pre-muscle mass +subset: human_subset +subset: mouse_subset synonym: "hyoid muscle plate" RELATED [] xref: EHDAA2:0000795 is_a: UBERON:0004120 ! mesoderm-derived structure @@ -306915,6 +319085,8 @@ relationship: develops_from UBERON:0010343 {source="EHDAA2"} ! 2nd arch mesenchy id: UBERON:0010349 name: otic capsule pre-cartilage condensation def: "An otic capsule endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "otic capsule anlage" EXACT [] xref: EHDAA2:0000833 is_a: UBERON:0004637 ! otic capsule @@ -306926,6 +319098,8 @@ relationship: part_of UBERON:0003110 ! otic region [Term] id: UBERON:0010354 name: Reichert's cartilage pre-cartilage condensation +subset: human_subset +subset: mouse_subset synonym: "future Reichert's cartilage" EXACT [] synonym: "hyoid cartilage pre-cartilage condensation" EXACT [EMAPA:17351] xref: EMAPA:17351 @@ -306937,6 +319111,8 @@ relationship: develops_from UBERON:0010254 {source="DOI:10.1111/j.1469-7580.2005 id: UBERON:0010355 name: ossification center def: "The first step in ossification of the cartilage is that the cartilage cells, at the point where ossification is commencing and which is termed a ossification center, enlarge and arrange themselves in rows. The matrix in which they are imbedded increases in quantity, so that the cells become further separated from each other. A deposit of calcareous material now takes place in this matrix, between the rows of cells, so that they become separated from each other by longitudinal columns of calcified matrix, presenting a granular and opaque appearance. Here and there the matrix between two cells of the same row also becomes calcified, and transverse bars of calcified substance stretch across from one calcareous column to another. Thus there are longitudinal groups of the cartilage cells enclosed in oblong cavities, the walls of which are formed of calcified matrix which cuts off all nutrition from the cells; the cells, in consequence, atrophy, leaving spaces called the primary areolC&." [Wikipedia:Ossification_center] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "center of ossification" RELATED [Wikipedia:Ossification_center] synonym: "centrum ossificationis" EXACT OMO:0003011 [FMA:TA] @@ -306952,6 +319128,8 @@ property_value: editor_note "currently classified as a zone of a bone organ, but id: UBERON:0010356 name: primary ossification center def: "A primary ossification center is the first area of a bone to start ossifying. It usually appears during prenatal development in the central part of each developing bone. In long bones the primary centers occur in the diaphysis/shaft and in irregular bones the primary centers occur usually in the body of the bone. Most bones have only one primary center (e.g. all long bones) but some irregular bones such as the os coxa (hip) and vertebrae have multiple primary centers." [Wikipedia:Ossification_center#Primary] +subset: human_subset +subset: mouse_subset synonym: "centrum ossificationis primarium" EXACT OMO:0003011 [NominaAnatomica:NA] synonym: "primarium" BROAD [FMA:TA] synonym: "primary ossification centre" EXACT [FMA:75447] @@ -306965,6 +319143,8 @@ is_a: UBERON:0010355 {source="FMA"} ! ossification center id: UBERON:0010357 name: secondary ossification center def: "A secondary ossification center is the area of ossification that appears after the primary ossification center has already appeared - most of which appear during the postnatal and adolescent years. Most bones have more than one secondary ossification center. In long bones, the secondary centres appear in the epiphyses." [Wikipedia:Ossification_center#Secondary] +subset: human_subset +subset: mouse_subset synonym: "centrum ossificationis secundarium" EXACT OMO:0003011 [NominaAnatomica:NA] synonym: "secondary ossification centre" EXACT [FMA:75448] synonym: "secundarium" BROAD [FMA:TA] @@ -306976,6 +319156,8 @@ is_a: UBERON:0010355 {source="FMA"} ! ossification center id: UBERON:0010358 name: arch of centrum of vertebra def: "An arch-shaped structure of the vertebra that extends dorsally (neural arch) or ventrally (hemal arch) from the vertebral centrum." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "arch of vertebra" NARROW [FMA:11946] synonym: "arcus vertebrae (vertebralis)" NARROW [FMA:11946] @@ -306992,6 +319174,8 @@ id: UBERON:0010359 name: pharyngeal arch mesenchyme from neural crest def: "Mesenchyme that develops_from a neural crest and is part of a entire pharyngeal arch associated mesenchyme." [OBOL:automatic] comment: Partially implements https://github.com/obophenotype/uberon/wiki/The-neural-crest NC meeting scheme +subset: human_subset +subset: mouse_subset synonym: "arch mesenchyme from neural crest" EXACT [] synonym: "branchial arch mesenchyme from neural crest" EXACT [] synonym: "neural crest derived arch mesenchyme" EXACT [] @@ -307008,6 +319192,8 @@ id: UBERON:0010360 name: pharyngeal arch mesenchyme from head mesenchyme def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a entire pharyngeal arch associated mesenchyme." [OBOL:automatic] comment: Partially implements https://github.com/obophenotype/uberon/wiki/The-neural-crest NC meeting scheme +subset: human_subset +subset: mouse_subset synonym: "arch mesenchyme from head mesenchyme" EXACT [] synonym: "branchial arch mesenchyme from head mesenchyme" EXACT [] synonym: "head mesenchyme derived arch mesenchyme" EXACT [] @@ -307024,6 +319210,8 @@ relationship: part_of UBERON:0010046 ! entire pharyngeal arch associated mesench id: UBERON:0010361 name: synostosis def: "Nonsynovial joint in which the articulating bones are connected by bone. Examples: epiphyseal junction, manubriosternal synostosis." [FMA:7499] +subset: human_subset +subset: mouse_subset synonym: "bony union" EXACT [FMA:7499] synonym: "junctura ossea" EXACT OMO:0003011 [FMA:TA] xref: FMA:7499 @@ -307036,6 +319224,8 @@ is_a: UBERON:0011134 {source="FMA"} ! nonsynovial joint id: UBERON:0010362 name: endoskeleton def: "Skeletal subdivision that undergoes indirect development and includes elements that develop as a replacement or substitution of other elements or tissues." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000037] +subset: human_subset +subset: mouse_subset synonym: "replacement skeleton" EXACT [VSAO:curator] xref: VSAO:0000037 xref: Wikipedia:Endoskeleton @@ -307049,6 +319239,8 @@ property_value: external_definition "An endoskeleton is an internal support stru id: UBERON:0010363 name: endochondral element def: "A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000139] +subset: human_subset +subset: mouse_subset synonym: "endochondral replacement element" EXACT [VSAO:0000139] xref: VSAO:0000139 xref: XAO:0004017 @@ -307061,6 +319253,8 @@ id: UBERON:0010364 name: dermal skeleton def: "Skeletal subdivision that undergoes direct development and includes elements that either develop in association with the basement membrane of the ectoderm or are homologous with such elements; includes dermatocranium, components of the appendicular skeleton, teeth and tooth-like elements of the oropharynx, and integumentary elements." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000035] comment: This ontology covers metazoa, so we do not use exoskeleton as primary label, as in VSAO +subset: human_subset +subset: mouse_subset synonym: "dermal skeletal system" RELATED [VSAO:curator] synonym: "dermoskeleton" RELATED [VSAO:curator] synonym: "desmoskeleton" RELATED [VSAO:curator] @@ -307075,6 +319269,8 @@ id: UBERON:0010365 name: odontoid tissue alt_id: UBERON:0001973 def: "Skeletal tissue that is part of the exoskeleton and derived from an odontogenic papilla." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000063] +subset: human_subset +subset: mouse_subset subset: uberon_slim synonym: "dental tissue" RELATED [VSAO:curator] synonym: "odontogenic tissue" EXACT [VSAO:curator] @@ -307107,6 +319303,8 @@ property_value: taxon_notes "in many vertebrates, odontoid tissue is not restric id: UBERON:0010366 name: conjunctival vasculature def: "A vasculature that is part of a conjunctiva." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "conjunctival veins" EXACT [FMA:70887] synonym: "conjunctival veins set" EXACT [FMA:70887] synonym: "set of conjunctival veins" EXACT [FMA:70887] @@ -307121,6 +319319,8 @@ relationship: part_of UBERON:0001811 ! conjunctiva id: UBERON:0010367 name: conjunctival vein def: "A vein that is part of a conjunctiva." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "conjunctival blood vessel" BROAD [] xref: SCTID:149885003 is_a: UBERON:0003496 ! head blood vessel @@ -307135,6 +319335,8 @@ relationship: part_of UBERON:0010366 ! conjunctival vasculature id: UBERON:0010368 name: pulmonary lobule def: "The smallest anatomical unit of the lung, measuring 0.50 to 2.00 cm in diameter. Each lobule is composed of 4-8 terminal bronchioles and their distal alveolar ducts and sacs. The lobules are separated by fibrous interlobular septa." [ncithesaurus:Pulmonary_Lobule] +subset: human_subset +subset: mouse_subset synonym: "lobulus pulmonis" EXACT OMO:0003011 [FMA:75739, FMA:TA] xref: FMA:75739 xref: NCIT:C33428 @@ -307150,6 +319352,8 @@ id: UBERON:0010369 name: secondary pulmonary lobule def: "A unit of lung supplied by three to five terminal bronchioles and contained by fibrous septa." [PMID:3259815] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lobulus pulmonis secondarius" EXACT OMO:0003011 [FMA:7414, FMA:TA] synonym: "respiratory lobule" RELATED [PMID:18403324] xref: FMA:7414 @@ -307163,6 +319367,8 @@ property_value: external_definition "a pyramidal mass of lung tissue with sides id: UBERON:0010370 name: tibial vein def: "One of the veins of the lower leg; empty into the popliteal vein." [http://www.thefreedictionary.com/tibial+vein] +subset: human_subset +subset: mouse_subset synonym: "vena tibialis" EXACT [] xref: EMAPA:37199 {source="MA:th"} xref: MA:0002243 @@ -307176,6 +319382,8 @@ relationship: part_of UBERON:0000978 ! leg id: UBERON:0010371 name: ecto-epithelium def: "Epithelium composed of cells that develops from the ectoderm[FMA,modified]." [FMA:69064] +subset: human_subset +subset: mouse_subset synonym: "ectoderm-derived epithelium" EXACT [] xref: FMA:69064 is_a: UBERON:0000483 ! epithelium @@ -307189,6 +319397,8 @@ relationship: develops_from UBERON:0000924 ! ectoderm id: UBERON:0010372 name: uncinate process of ethmoid def: "In the ethmoid bone, a curved lamina, the uncinate process, projects downward and backward from this part of the labyrinth; it forms a small part of the medial wall of the maxillary sinus, and articulates with the ethmoidal process of the inferior nasal concha." [Wikipedia:Uncinate_process_of_ethmoid_bone] +subset: human_subset +subset: mouse_subset synonym: "processus uncinatus" RELATED [Wikipedia:Uncinate_process_of_ethmoid_bone] synonym: "processus uncinatus ossis ethmoidalis" RELATED OMO:0003011 [Wikipedia:Uncinate_process_of_ethmoid_bone] synonym: "uncinate process" BROAD INCONSISTENT [] @@ -307209,6 +319419,8 @@ id: UBERON:0010373 name: uncinate process of pancreas def: "In the head of the pancreas, the angle of junction of the lower and left lateral borders forms a prolongation, termed the uncinate process. During the embryonic development of the distal foregut, the duodenum c-shape is formed while rotating the ventral pancreatic bud into the dorsal bud. The dorsal and ventral pancreatic buds fuse. The dorsal pancreatic bud becomes the body, tail, and isthmus of the pancreas and the ventral pancreatic bud forms the pancreatic head and uncinate process[WP]." [Wikipedia:Uncinate_process_of_pancreas] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lesser pancreas" EXACT [FMA:15857] synonym: "processus uncinatus" BROAD OMO:0003011 [] synonym: "processus uncinatus (pancreas)" EXACT [FMA:15857] @@ -307233,6 +319445,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/p [Term] id: UBERON:0010375 name: pancreas dorsal primordium +subset: human_subset +subset: mouse_subset synonym: "dorsal pancreas" RELATED INCONSISTENT [FMA:79793] xref: EHDAA2:0001384 xref: FMA:79793 @@ -307247,6 +319461,8 @@ property_value: editor_note "consider merging with dorsal pancreatic bud. Starts [Term] id: UBERON:0010376 name: pancreas ventral primordium +subset: human_subset +subset: mouse_subset synonym: "ventral pancreas" RELATED INCONSISTENT [FMA:79794] xref: EHDAA2:0001387 xref: FMA:79794 @@ -307262,6 +319478,8 @@ property_value: taxon_notes "Starts at CS14 in human (EHDAA2) or CS13-14 (embryo id: UBERON:0010377 name: mesenchyme from somatopleure def: "Mesenchyme that develops_from a somatopleure." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001120 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -307278,6 +319496,8 @@ property_value: editor_note "the way this class is defined also includes extraem id: UBERON:0010378 name: mesenchyme from splanchnopleure def: "Mesenchyme that develops_from a splanchnopleure." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001122 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -307294,6 +319514,8 @@ id: UBERON:0010379 name: superior tarsal muscle def: "The superior tarsal muscle is a smooth muscle adjoining the levator palpebrae superioris muscle that helps to raise the upper eyelid." [Wikipedia:Superior_tarsal_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "mueller muscle" RELATED [Wikipedia:Superior_tarsal_muscle] synonym: "Mueller's muscle" EXACT [FMA:49058] synonym: "Muller's muscle" RELATED [Wikipedia:Superior_tarsal_muscle] @@ -307320,6 +319542,8 @@ property_value: editor_note "declaring this to be both smooth muscle and part of id: UBERON:0010380 name: enteric nerve def: "The neurons that innervate the esophagus, stomach, small and large bowel." [MGI:csmith, MP:0001046] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37479 {source="MA:th"} xref: MA:0001145 @@ -307334,6 +319558,8 @@ relationship: part_of UBERON:0002005 ! enteric nervous system id: UBERON:0010384 name: lumen of laryngopharynx def: "An anatomical space that is enclosed by a hypopharynx." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "laryngopharynx lumen" EXACT [FMA:55096] xref: FMA:55096 is_a: UBERON:0000464 ! anatomical space @@ -307347,6 +319573,8 @@ relationship: part_of UBERON:0001731 ! cavity of pharynx id: UBERON:0010386 name: Peyer's patch follicle def: "A lymphoid follicle that is part of a Peyer's patch." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "Peyer's patch follicle" EXACT [MA:0000732] xref: MA:0000732 @@ -307360,6 +319588,8 @@ relationship: part_of UBERON:0001211 ! Peyer's patch id: UBERON:0010387 name: Peyer's patch T cell area def: "The Peyer's patch area normally occupied by T lymphocytes." [MP:0002392] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37939 {source="MA:th"} is_a: UBERON:0010393 ! T cell domain @@ -307373,6 +319603,8 @@ id: UBERON:0010388 name: proximal segment of rib def: "The segment of the rib that connects to a vertebra[MP]. a small part of the rib composed of the head, neck, tuberculum and a short proximal part of the body[PMID]." [MP:0000152, PMID:15906248] comment: The proximal rib derives from the caudal half of somite[PMID:15906248] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "costal part of rib" RELATED [] synonym: "proximal part of rib" EXACT [PMID:15906248] @@ -307391,6 +319623,8 @@ id: UBERON:0010389 name: pterygoid bone def: "A bone which corresponds to the inner plate of the pterygoid process of the human skull, but which, in all vertebrates below mammals, is not connected with the posterior nares, but serves to connect the palatine bones with the point of suspension of the lower jaw." [http://www.websters-online-dictionary.org/definitions/Pterygoid+bone] comment: Sources vary as to whether the pterygoid corresponds to the pterygoid processes in general, or the latter/inner plate. +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "inner plate of pterygoid process" RELATED [MA:0001471] synonym: "lamina lateralis (processus pterygoideus)" EXACT [FMA:54687, MP:0004452] @@ -307420,6 +319654,8 @@ property_value: external_definition "Palatal bones of intramembranous origin tha id: UBERON:0010390 name: lumen of urethra def: "An organ cavity that is part of a urethra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "urethral lumen" EXACT [FMA:19709] xref: FMA:19709 xref: SCTID:279432008 @@ -307434,6 +319670,8 @@ id: UBERON:0010391 name: parametrium def: "The subserous connective tissue of the pelvic floor of the supracervical portion of the uterus. The parametrium extends laterally between the layers of the broad ligament." [ncithesaurus:Parametrium] comment: subserous coat of the uterus laterally between the layers of the broad ligament[MP] - todo - check relationships +subset: human_subset +subset: mouse_subset xref: BTO:0005627 xref: FMA:77061 xref: NCIT:C12320 @@ -307447,6 +319685,8 @@ relationship: part_of UBERON:0000459 ! uterine wall [Term] id: UBERON:0010392 name: B cell domain +subset: human_subset +subset: mouse_subset is_a: UBERON:0010394 ! lymphocyte domain intersection_of: UBERON:0010394 ! lymphocyte domain intersection_of: has_part CL:0000236 ! B cell @@ -307456,6 +319696,8 @@ property_value: editor_note "TODO - check" xsd:string [Term] id: UBERON:0010393 name: T cell domain +subset: human_subset +subset: mouse_subset is_a: UBERON:0010394 ! lymphocyte domain intersection_of: UBERON:0010394 ! lymphocyte domain intersection_of: has_part CL:0000084 ! T cell @@ -307465,6 +319707,8 @@ property_value: editor_note "TODO - check" xsd:string [Term] id: UBERON:0010394 name: lymphocyte domain +subset: human_subset +subset: mouse_subset is_a: UBERON:0005057 ! immune organ is_a: UBERON:0010001 ! cell cluster organ intersection_of: UBERON:0010001 ! cell cluster organ @@ -307480,6 +319724,8 @@ id: UBERON:0010395 name: lymph node primary follicle def: "An unstimulated network of follicular dendritic cells and small resting B cells in the lymph node cortex." [https://github.com/obophenotype/uberon/issues/6, MP:0002345] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "primary follicle of lymph node" EXACT [] xref: EMAPA:35530 @@ -307499,6 +319745,8 @@ id: UBERON:0010396 name: afferent lymphatic vessel def: "Lymphatic vessel that enters the lymph node. The afferent lymph vessels enter at all parts of the periphery of the lymph node, and after branching and forming a dense plexus in the substance of the capsule, open into the lymph sinuses of the cortical part. In doing this they lose all their coats except their endothelial lining, which is continuous with a layer of similar cells lining the lymph paths." [MP:MP] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "vasa afferentia lymphoglandula" EXACT [Wikipedia:Afferent_lymphatic_vessels] synonym: "vasa afferentia lymphoglandulae" EXACT [Wikipedia:Afferent_lymphatic_vessels] @@ -307516,6 +319764,8 @@ id: UBERON:0010397 name: efferent lymphatic vessel def: "Lymphatic vessel that exits the lymph node. The efferent lymphatic vessel commences from the lymph sinuses of the medullary portion of the lymph nodes and leave the lymph nodes either to veins or greater nodes. Efferent lymphatic vessels are also found in the thymus and spleen. This is in contrast to afferent lymphatic vessels, which are found only in lymph nodes." [MP:MP] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "efferent lymphatic vessel" RELATED [Wikipedia:Efferent_lymph_vessel] synonym: "efferent lymphatic vessels" RELATED [Wikipedia:Efferent_lymph_vessel] @@ -307530,6 +319780,7 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l id: UBERON:0010398 name: spleen marginal sinus def: "The border region surrounding the spleen B cell follicles and the periarteriolar lymphoid sheath that separates it from the marginal zone that mediates lymphocyte entry into the white pulp from the blood." [MP:MP] +subset: mouse_subset subset: pheno_slim synonym: "splenic marginal sinus" EXACT [MP:0002363] xref: EMAPA:37964 {seeAlso="https://github.com/obophenotype/mouse-anatomy-ontology/issues/117", source="MA:th"} @@ -307545,6 +319796,8 @@ id: UBERON:0010399 name: spleen trabecular artery def: "One of the branches of the splenic artery[MP]." [MP:0002354, Wikipedia:Trabecular_arteries] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "trabecular artery" RELATED [] xref: MA:0000759 @@ -307567,6 +319820,8 @@ id: UBERON:0010400 name: spleen trabecular vein def: "One of the veins that feed the splenic vein." [MP:0002228, Wikipedia:Trabecular_veins] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "trabecular vein" RELATED [Wikipedia:Trabecular_veins] xref: MA:0000760 @@ -307588,6 +319843,8 @@ id: UBERON:0010401 name: spleen central arteriole def: "A blood vessel surrounded by the periarteriolar lymphoid sheath that connects the trabecular artery to the trabecular vein." [MP:MP] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "central arteriole" BROAD [] synonym: "follicular arteriole" EXACT [MP:0002361] @@ -307606,6 +319863,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0010402 name: epidermis suprabasal layer def: "Any layer of the epidermis that is superior to the stratum basale." [http://orcid.org/0000-0002-6601-2165, MP:0001233, PMID:10469309] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "suprabasal cell layer of skin" EXACT [] synonym: "suprabasal layer" BROAD [MP:0001233] @@ -307624,6 +319883,8 @@ relationship: superficial_to UBERON:0002025 ! stratum basale of epidermis id: UBERON:0010403 name: brain marginal zone def: "The part of the future brain that is derived from the mantle layer of the neural tube." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "brain marginal zone" BROAD [MA:0000812] xref: DHBA:10508 @@ -307638,6 +319899,8 @@ property_value: external_ontology_notes "not clear if the MA/EMAPA classes refer id: UBERON:0010404 name: lateral ventricle subependymal layer def: "A cell layer below the ependyma in the lateral ventricles of the brain. This region contains adult neural stem cells which have the potential to generate new neurons and glial cells via neurogenesis. It is an adult version of the embryonic forebrain germinal zone." [Wikipedia:Subependymal_zone] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:35489 xref: MA:0000965 @@ -307652,6 +319915,8 @@ relationship: part_of UBERON:0004922 {source="Wikipedia"} ! postnatal subventric id: UBERON:0010405 name: spinal cord lateral motor column def: "Column of motor neurons which innervate muscles in the limb; motor neurons in the lateral motor column are further organized into pools, each of which innervates a specific muscle in the limb." [MP:MP] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: MA:0001129 is_a: UBERON:0003990 ! spinal cord motor column @@ -307661,6 +319926,8 @@ is_a: UBERON:0005374 ! spinal cord lateral column id: UBERON:0010406 name: cholinergic enteric nerve def: "Nerve fibers that utilize acetylcholine as a neurotransmitter to the intestinal system." [MP:0001049] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37480 {source="MA:th"} xref: MA:0001146 @@ -307672,6 +319939,8 @@ id: UBERON:0010408 name: ocular angle artery def: "The angular artery is the terminal part of the facial artery; it ascends to the medial angle of the eye's orbit, imbedded in the fibers of the angular head of the Quadratus labii superioris, and accompanied by the angular vein." [MP:MP] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "angular artery" EXACT [FMA:49583] xref: EMAPA:37673 {source="MA:th"} xref: FMA:49583 @@ -307688,6 +319957,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0010409 name: ocular surface region def: "The integrated unit (of the eye) that consists of the conjunctiva, the corneal surface, and the ocular mucosal adnexa including the lid margins and the meibomian gland openings, the lacrimal glands and the lacrimal drainage system, all which are critical to maintain ocular surface integrity and provide protection from external antigens and pathogenic microorganisms." [MP:0013754] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "eye surface" EXACT [MA:0002486] synonym: "eye surface region" EXACT [] @@ -307703,6 +319974,8 @@ relationship: superficial_to UBERON:0022288 ! surface of eyeball id: UBERON:0010410 name: inguinal fat pad def: "Encapsulated adipose tissue found in the groin." [MGI:csmith] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fat depot of inguinal region" EXACT [] synonym: "inguinal fat depot" EXACT [] @@ -307717,6 +319990,8 @@ relationship: part_of UBERON:0008337 ! inguinal part of abdomen id: UBERON:0010411 name: retroperitoneal fat pad def: "Encapsulated adipose tissue found on the dorsal side of the peritoneum." [MGI:csmith, MP:0005337] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "retroperitoneal fat depot" EXACT [] xref: MA:0002549 @@ -307731,6 +320006,8 @@ relationship: part_of UBERON:0002358 ! peritoneum id: UBERON:0010412 name: epididymal fat pad def: "Encapsulated adipose tissue associated with the epididymis." [MGI:csmith, MGI:rbabiuk] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "periepididymal fat pad" EXACT [MP:0009288] xref: EMAPA:35316 @@ -307746,6 +320023,8 @@ relationship: part_of UBERON:0001301 ! epididymis id: UBERON:0010413 name: parametrial fat pad def: "Encapsulated adipose tissue associated with the extension of the subserous coat of the uterus laterally between the layers of the broad ligament." [MGI:csmith] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "parametrial adipose tissue" RELATED [BTO:0005628] synonym: "parametrial fat" RELATED [BTO:0005628] @@ -307762,6 +320041,8 @@ relationship: part_of UBERON:0010391 ! parametrium id: UBERON:0010414 name: omental fat pad def: "Encapsulated adipose tissue associated with the fold of peritoneal tissue that extends from the stomach to the posterior abdominal wall after associating with the transverse colon." [MP:MP] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "omental fat depot" EXACT [MP:0010044] xref: MA:0002956 @@ -307774,6 +320055,7 @@ relationship: part_of UBERON:0003688 ! omentum id: UBERON:0010415 name: barrel cortex def: "One of the discrete functional units of the somatosensory cortex that processes tactile information derived from the vibrissae." [MP:0003989] +subset: mouse_subset subset: pheno_slim synonym: "barrel cortex" RELATED [NeuroNames:2703] synonym: "barrel field" RELATED [NeuroNames:2703] @@ -307803,6 +320085,8 @@ property_value: external_definition "The term primary somatosensory area, barrel id: UBERON:0010416 name: lymph node B cell domain def: "A part of the lymph node cortex in which B lymphocytes home to primary follicles to survey follicular dendritic cells (FDCs); antigen stimulated B cells proliferate and differentiate within the follicles forming distinctive germinal centers." [MP:MP] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lymph node B cell dependent cortex" EXACT [MP:0002344] synonym: "lymph node B-cell domain" EXACT [MP:0002344] @@ -307818,6 +320102,8 @@ relationship: part_of UBERON:0002006 {source="MP"} ! cortex of lymph node id: UBERON:0010417 name: lymph node T cell domain def: "The paracortex and interfollicular cortex of the lymph node in which T lymphocytes home to survey dendritic cells." [MP:0002347] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lymph node deep cortex" EXACT [MP:0002347] synonym: "lymph node T cell dependent paracortex" EXACT [MP:0002347] @@ -307840,6 +320126,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l id: UBERON:0010418 name: urethral opening def: "An orifice that is part of a lower urinary tract." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "urethral orifice" EXACT [OBOL:automatic] xref: EMAPA:35965 @@ -307853,6 +320141,7 @@ relationship: part_of UBERON:0001556 ! lower urinary tract id: UBERON:0010419 name: vibrissa follicle def: "One of the tubular invaginations of the epidermis enclosing the hair roots and from which grow the vibrissae located on the muzzle and face of many species." [MGI:llw2, MP:0010234] +subset: mouse_subset subset: pheno_slim synonym: "follicle of sinus hair" EXACT [EMAPA:26759] synonym: "follicle of vibrissa" EXACT [EMAPA:26720] @@ -307871,6 +320160,8 @@ id: UBERON:0010420 name: lymph node germinal center mantle zone def: "A part of the secondary follicle in which naive B cells reside along with some helper T cells, macrophages and follicular dendritic cells; these are displaced by the expanding germinal centre and form a 'mantle' around it." [http://orcid.org/0000-0003-4183-8865, https://github.com/obophenotype/uberon/issues/7, https://orcid.org/0000-0001-9990-8331, MP:MP, PMID:25656706] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "germinal center mantle zone" BROAD [] synonym: "lymph node B cell corona" EXACT [CL:tm] @@ -307898,6 +320189,8 @@ id: UBERON:0010421 name: spleen B cell corona def: "The area of the (spleen) secondary B follicle that surrounds the germinal center and harbors the small recirculating B lymphocytes." [CL:tm, https://github.com/obophenotype/uberon/issues/6, PMID:17495967] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "B cell domain of the spleen" BROAD [MP:0002360] synonym: "B lymphocyte domain of the spleen" BROAD [] @@ -307926,6 +320219,8 @@ property_value: dc:contributor https://github.com/tmeehan id: UBERON:0010422 name: primary nodular lymphoid tissue def: "A lymphoid follicle containing naive B cells." [CL:tm] +subset: human_subset +subset: mouse_subset synonym: "primary follicle" RELATED [] synonym: "primary lymphoid follicle" EXACT [] synonym: "primary lymphoid nodule" EXACT [FMA:55223] @@ -307939,6 +320234,8 @@ id: UBERON:0010423 name: primary lymphoid nodule of tonsil def: "A primary nodular lymphoid tissue that is part of a tonsil." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lymphoid nodule of tonsil" RELATED [FMA:86018] xref: FMA:86018 is_a: UBERON:0010422 {source="FMA"} ! primary nodular lymphoid tissue @@ -307951,6 +320248,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0010424 name: distal segment of rib comment: The distal rib derives from both somite halves[PMID:15906248] +subset: human_subset +subset: mouse_subset synonym: "distal part of rib" EXACT [PMID:15906248] synonym: "distal rib" EXACT [MA:0001397] synonym: "distal rib segment" EXACT [] @@ -307966,6 +320265,8 @@ relationship: part_of UBERON:0002228 {source="MA"} ! rib id: UBERON:0010425 name: internal naris def: "A naris that is located inside the nasal cavity and connects to the pharynx." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "choana" EXACT [] synonym: "choanae" RELATED OMO:0003004 [] @@ -307988,6 +320289,7 @@ property_value: taxon_notes "In humans the only internal naris is the posterior id: UBERON:0010426 name: oropharyngeal choana def: "Opening/conduit between the nasal cavity and the oropharynx via the roof of the mouth." [https://orcid.org/0000-0002-6601-2165] +subset: mouse_subset synonym: "apertura nasalis interna" RELATED [AAO:0000025] synonym: "choana of oropharynx" EXACT [] synonym: "cleft palate" RELATED [] @@ -308013,6 +320315,8 @@ property_value: function_notes "has function in pressure equalization in birds t id: UBERON:0010427 name: ciliary processes def: "The ciliary processes are formed by the inward folding of the various layers of the choroid, i.e. , the choroid proper and the lamina basalis, and are received between corresponding foldings of the suspensory ligament of the lens." [Wikipedia:Ciliary_processes] +subset: human_subset +subset: mouse_subset synonym: "ciliary process" RELATED [Wikipedia:Ciliary_processes] synonym: "ciliary processes" EXACT [FMA:76551] synonym: "ciliary processes set" EXACT [FMA:76551] @@ -308036,6 +320340,8 @@ id: UBERON:0010428 name: flat bone def: "A bone that is shaped as a broad flat plate and composed of two thin layers of compact tissue enclosing between them a variable quantity of cancellous tissue, which is the location of red bone marrow." [Wikipedia:Flat_bone] comment: Examples: cranium, the ilium, sternum, rib cage, the sacrum and the scapula; the occipital, parietal, frontal, nasal, lacrimal, vomer, scapula, os coxC&, sternum, and ribs +subset: human_subset +subset: mouse_subset synonym: "os planum" RELATED OMO:0003011 [Wikipedia:Flat_bone] xref: FMA:7476 xref: galen:FlatBone @@ -308054,6 +320360,8 @@ name: zygomaticus muscle def: "One of: zygomaticus major, zygomaticus minor." [https://orcid.org/0000-0002-6601-2165] comment: origin: posterior braincase subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "m. levator nasii" RELATED [] synonym: "m. zygomaticus" EXACT [] synonym: "zygomaticus" EXACT [MA:0002404] @@ -308071,6 +320379,8 @@ relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0010467 name: teres muscle +subset: human_subset +subset: mouse_subset synonym: "teres" EXACT [] xref: EMAPA:36155 xref: NCIT:C33752 @@ -308086,6 +320396,8 @@ name: teres minor muscle def: "A narrow, elongated muscle of the rotator cuff." [Wikipedia:Teres_minor_muscle] comment: Dorsal group[Kardong] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "musculus teres minor" RELATED OMO:0003011 [Wikipedia:Teres_minor_muscle] synonym: "teres minor" EXACT [FMA:32550] @@ -308108,6 +320420,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c4/Gr id: UBERON:0010498 name: pseudostratified columnar epithelium def: "A simple columnar epithelium that looks stratified but is not, because its cells are arranged with their nuclei at different levels." [http://medical-dictionary.thefreedictionary.com/pseudostratified+epithelium, Wikipedia:Pseudostratified_columnar_epithelium] +subset: human_subset +subset: mouse_subset xref: FMA:45572 xref: NCIT:C33419 xref: NCIT:C49316 @@ -308122,6 +320436,8 @@ property_value: function_notes "Pseudostratified epithelia function in secretion id: UBERON:0010499 name: pseudostratified ciliated columnar epithelium def: "Epithelium composed of a single layer of cells, appearing as layered because the column-shaped cells vary in height so the nuclei are at different levels. The basal portions of all the cells are in contact with the basement membrane. It lines the respiratory system and the male reproductive tract. The cilia in the respiratory tract are motile, while the stereocilia in the male reproductive tract are immobile." [NCIT:NCIT] +subset: human_subset +subset: mouse_subset synonym: "epithelium pseudostratificatum columnare ciliatum (trachea et bronchi)" EXACT [FMA:13146] xref: FMA:13146 xref: NCIT:C13181 @@ -308136,6 +320452,8 @@ relationship: has_part CL:0000067 ! ciliated epithelial cell [Term] id: UBERON:0010501 name: pseudostratified smooth columnar epithelium +subset: human_subset +subset: mouse_subset synonym: "non-ciliated pseudostratified columnar epithelia" RELATED [] xref: FMA:72059 is_a: UBERON:0010498 {source="FMA"} ! pseudostratified columnar epithelium @@ -308152,6 +320470,8 @@ consider: UBERON:0006589 id: UBERON:0010505 name: periosteal dura mater def: "The outermost of the two layers of the cranial dura mater which normally always adheres to the periosteum of the bones of the cranial vault." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "endosteal layer of dura mater" RELATED [FMA:231547] synonym: "outer layer of dura mater" EXACT [FMA:231547] synonym: "outer periosteal layer of dura mater" EXACT [] @@ -308170,6 +320490,8 @@ relationship: part_of UBERON:0002092 ! brain dura mater id: UBERON:0010506 name: meningeal dura mater def: "The inner layer of the dura mater surrounding the brain. It is mostly fused with the outer layer, the endocranium that is adherent to the inner aspect of the cranial bones. These two layers form the dura mater. The latter covers and protects the brain and the spinal cord." [ncithesaurus:Meningeal_Layer_of_the_Dura_Mater] +subset: human_subset +subset: mouse_subset synonym: "inner layer of dura mater" EXACT [FMA:231549] synonym: "meningeal dura" EXACT [FMA:231549] synonym: "meningeal layer of dura mater" EXACT [FMA:231549] @@ -308184,6 +320506,8 @@ property_value: editor_note "not clear whether this should be classified as part id: UBERON:0010507 name: layer of dura mater def: "The intracranial dura mater, consisting of two layers: the outer periosteal layer which normally always adheres to the periosteum of the bones of the cranial vault; and the inner meningeal layer which in most places is fused with the outer. The two layers separate to accommodate meningeal vessels and large venous (dural) sinuses. The meningeal layer is also involved in the formation of the various dural folds, such as the falx cerebri and tentorium cerebelli and is comparable to and continuous with the dural mater of the spinal cord. The cranial epidural space is then a potential space between the bone and the combined periosteum/periosteal layer of the dura mater realised only pathologically and is neither continuous with or comparable to the vertebral epidural space." [http://www.mondofacto.com/facts/dictionary?periosteal+layer+of+dura+mater] +subset: human_subset +subset: mouse_subset xref: FMA:231545 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004923 {source="FMA"} ! organ component layer @@ -308194,6 +320518,8 @@ property_value: editor_note "not clear whether this should be classified as part id: UBERON:0010509 name: strand of pelage hair def: "A strand of hair that is part of a coat of hair." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pelage hair" EXACT [MA:0001897] xref: EMAPA:36485 xref: MA:0001897 @@ -308206,6 +320532,8 @@ relationship: part_of UBERON:0010166 ! coat of hair id: UBERON:0010510 name: strand of auchene hair def: "A truncal hair that has a single constriction and bend about midway along the hair shaft, and contains two or more air cells in the medulla." [MP:0000405] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "auchene hair" EXACT [MA:0001893] xref: EMAPA:36527 @@ -308216,6 +320544,8 @@ is_a: UBERON:0010509 {source="MA"} ! strand of pelage hair id: UBERON:0010511 name: strand of awl hair def: "A truncal hairs that is straight, but shorter than a guard hair, and contain two or more air cells in the medulla." [MP:0000400, Wikipedia:Awn_hair] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "awl hair" EXACT [MA:0001894] xref: EMAPA:36639 @@ -308227,6 +320557,8 @@ is_a: UBERON:0010509 {source="MA"} ! strand of pelage hair id: UBERON:0010512 name: strand of guard hair def: "A long, straight truncal hair that contains two air cells in the medulla[MP]. A strand of hair from the top layer consisting of longer, often coarser, straight shafts of hair that stick out through the underfur. This is usually the visible layer for most mammals and contains most of the pigmentation." [MP:0006365, Wikipedia:Guard_hair] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "guard hair" EXACT [MA:0001896] synonym: "guardhair" EXACT [] @@ -308241,6 +320573,8 @@ property_value: function_notes "It protects the underfur from outside factors, s id: UBERON:0010513 name: strand of zigzag hair def: "A truncal hair that has two or more sharp bends with diameter constrictions at the bends, and contain one air cell in the medulla." [MP:0006366] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "zigzag hair" EXACT [MA:0001898] xref: EMAPA:36640 @@ -308253,6 +320587,8 @@ relationship: part_of UBERON:0002100 ! trunk id: UBERON:0010514 name: strand of duvet hair def: "A strand of hair from the fine underhair of the coat." [MP:0000408] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "duvet hair" EXACT [MA:0001895] xref: MA:0001895 @@ -308268,8 +320604,8 @@ synonym: "eye cap" RELATED [] synonym: "ocular scale" RELATED [] xref: Wikipedia:Brille is_a: UBERON:1000021 ! skin of face -relationship: derived_from_ancestral_fusion_of UBERON:0001712 ! upper eyelid -relationship: derived_from_ancestral_fusion_of UBERON:0001713 ! lower eyelid +relationship: has_fused_element UBERON:0001712 ! upper eyelid +relationship: has_fused_element UBERON:0001713 ! lower eyelid relationship: in_taxon NCBITaxon:32561 ! Sauria relationship: part_of UBERON:0000019 ! camera-type eye property_value: taxon_notes "In snakes, there is no eyelid and the brille is clear and cannot be distinguished except when the animal is becoming ready for ecdysis. At that time, it becomes cloudy and is visible as a cover over the eye. When the snake moults, the brille is also shed as part of its skin. The Brilles protect their eyes from dust and dirt and gives them a 'glassy-eyed' blank appearance Snakes, flap-footed lizards, night lizards, and some skinks have brilles. All geckos except those in the subfamily Eublepharinae (eyelid geckos) possess brilles. Fish also have transparent eyelids called adipose eyelids." xsd:string @@ -308334,6 +320670,8 @@ property_value: taxon_notes "electric ray" xsd:string id: UBERON:0010521 name: electroreceptor organ def: "An organ that is capable of detecting electrical stimulus." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "electric sense organ" EXACT [] synonym: "electroreception organ" EXACT [] is_a: UBERON:0000020 ! sense organ @@ -308345,6 +320683,8 @@ relationship: capable_of GO:0050964 ! detection of electrical stimulus involved id: UBERON:0010522 name: replacement element def: "Skeletal element that forms as a replacement or substitution of another element or tissue." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000135] +subset: human_subset +subset: mouse_subset xref: VSAO:0000135 xref: XAO:0004016 xref: ZFA:0005624 @@ -308355,6 +320695,8 @@ relationship: part_of UBERON:0010362 {source="cjm"} ! endoskeleton id: UBERON:0010523 name: microcirculatory vessel def: "A vessel of the microcirculature, lying between the arterioles and venules; includes capillaries (blood and lymphatic), metarterioles and arteriovenous anastomoses." [http://orcid.org/0000-0002-6601-2165, MESH:A07.231.432, ZFA:0005251] +subset: human_subset +subset: mouse_subset synonym: "microcirculatory vessels" RELATED OMO:0003004 [TAO:0005251] xref: MESH:D055806 xref: TAO:0005251 @@ -308366,6 +320708,8 @@ relationship: part_of UBERON:0002049 {source="ZFA"} ! vasculature id: UBERON:0010524 name: fibularis tertius def: "A muscle located in the lower limb that arises from the lower third of the anterior surface of the fibula; from the lower part of the interosseous membrane; and from an intermuscular septum between it and the peroneus brevis and inserted into the dorsal surface of the base of the metatarsal bone of the 5th digit. It is innervated by the deep fibular nerve. Its action is that of weak dorsiflexion of the ankle joint and to evert the foot at the ankle joint." [DOI:10.3389/fevo.2018.00053, Wikipedia:Peroneus_tertius_muscle] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fibularis tertius" RELATED [Wikipedia:Peroneus_tertius] synonym: "fibularis tertius muscle" RELATED [Wikipedia:Peroneus_tertius] @@ -308389,6 +320733,8 @@ property_value: taxon_notes "The fibularis tertius, commonly associated with hum id: UBERON:0010526 name: fibularis brevis def: "The peroneus brevis muscle (or fibularis brevis) lies under cover of the peroneus longus, and is a shorter and smaller muscle." [Wikipedia:Peroneus_brevis] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fibularis brevis" RELATED [Wikipedia:Peroneus_brevis] synonym: "musculus peroneus brevis" EXACT OMO:0003011 [FMA:TA] @@ -308409,6 +320755,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3d/Gr id: UBERON:0010527 name: cavity of bone organ def: "An organ cavity that surrounded_by a bone." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bone organ cavity" EXACT [FMA:24021] xref: FMA:24021 is_a: UBERON:0002558 ! organ cavity @@ -308419,6 +320767,8 @@ relationship: part_of UBERON:0001474 ! bone element [Term] id: UBERON:0010528 name: pneumatic cavity of bone +subset: human_subset +subset: mouse_subset synonym: "air space of bone" EXACT [FMA:24028] xref: FMA:24028 is_a: UBERON:0010527 {source="FMA"} ! cavity of bone organ @@ -308427,6 +320777,8 @@ relationship: part_of UBERON:0008193 ! pneumatized bone [Term] id: UBERON:0010531 name: metanephros induced blastemal cells +subset: human_subset +subset: mouse_subset synonym: "cap mesenchyme of metanephros of urinary system" RELATED [EMAPA:17645] synonym: "induced blastemal cells" EXACT [VHOG:0001241] synonym: "nephrogenic interstitium" RELATED [] @@ -308449,6 +320801,8 @@ property_value: external_ontology_notes "different versions of EMAPA have differ id: UBERON:0010532 name: primitive nephron def: "An epithelial tube that is fated to become a nephron." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "developing nephron" BROAD [] synonym: "future nephron" EXACT [] synonym: "presumptive nephron" EXACT [] @@ -308466,6 +320820,8 @@ property_value: external_ontology_notes "EHDAA2 treats this as already having a id: UBERON:0010533 name: metanephros cortex def: "The metanephric cortex is the outer region of the metanephros[GO]." [GO:0072214] +subset: human_subset +subset: mouse_subset xref: VHOG:0000714 is_a: UBERON:0001225 ! cortex of kidney is_a: UBERON:0004120 ! mesoderm-derived structure @@ -308478,6 +320834,8 @@ relationship: part_of UBERON:0000081 {source="VHOG"} ! metanephros id: UBERON:0010534 name: primitive mesonephric nephron def: "Anatomical cluster which give rise to mature mesonephric nephrons. Zebrafish continously generate new mesonephric nephrons." [GOC:cvs, https://orcid.org/0000-0002-2244-7917, ZFA:0005584] +subset: human_subset +subset: mouse_subset synonym: "developing mesonephric nephron" EXACT [ZFA:0005584] synonym: "primitive mesonephric nephron" EXACT [] xref: ZFA:0005584 @@ -308491,6 +320849,8 @@ relationship: part_of UBERON:0000080 ! mesonephros id: UBERON:0010535 name: primitive metanephric nephron def: "A primitive nephron that is part of a metanephros." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "developing metanephric nephron" EXACT [] synonym: "primitive metanephric nephron" EXACT [] synonym: "primitive nephron" BROAD [EHDAA2:0001516] @@ -308505,6 +320865,8 @@ relationship: part_of UBERON:0005113 {source="EHDAA2"} ! metanephric cortex mese [Term] id: UBERON:0010536 name: nephron progenitor +subset: human_subset +subset: mouse_subset is_a: UBERON:0000479 {source="ZFA"} ! tissue relationship: has_potential_to_develop_into UBERON:0001285 ! nephron relationship: part_of UBERON:0003918 {source="cjm"} ! kidney mesenchyme @@ -308513,6 +320875,8 @@ relationship: part_of UBERON:0003918 {source="cjm"} ! kidney mesenchyme id: UBERON:0010537 name: mesonephric nephron progenitor def: "Cluster of cells comprising a portion of tissue which gives rise to new mesonephric nephrons. The cluster contains self-renewing stem cells." [ZFA:0005587] +subset: human_subset +subset: mouse_subset xref: ZFA:0005587 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010536 ! nephron progenitor @@ -308525,6 +320889,8 @@ id: UBERON:0010538 name: paired limb/fin segment def: "An appendage segment that is part of a limb/fin." [OBOL:automatic] subset: homology_grouping +subset: human_subset +subset: mouse_subset synonym: "limb/fin segment" EXACT [] is_a: UBERON:0010758 ! subdivision of organism along appendicular axis intersection_of: UBERON:0010758 ! subdivision of organism along appendicular axis @@ -308537,6 +320903,8 @@ relationship: part_of UBERON:0004708 ! paired limb/fin id: UBERON:0010540 name: tarsus pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a tarsal bone." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001978 is_a: UBERON:0003328 ! mesenchyme of footplate is_a: UBERON:0005866 ! pre-cartilage condensation @@ -308554,6 +320922,8 @@ relationship: part_of UBERON:0004454 ! tarsal region id: UBERON:0010541 name: tarsus cartilage element def: "A cartilaginous condensation that has the potential to develop into a tarsal bone." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001977 is_a: UBERON:0003328 ! mesenchyme of footplate is_a: UBERON:0005863 ! cartilaginous condensation @@ -308571,6 +320941,8 @@ relationship: part_of UBERON:0004454 ! tarsal region id: UBERON:0010543 name: acropodial skeleton def: "The subdivision of the skeleton that consists of all the skeletal elements at the distalmost end of the autopodium - i.e. the bones of the digits or their cartilaginous precursors[VSAO,modified]." [https://orcid.org/0000-0002-6601-2165, VSAO:0005028, VSAO:NI] +subset: human_subset +subset: mouse_subset synonym: "acropodial skeleton" EXACT [] synonym: "acropodium" RELATED [VSAO:0005028, VSAO:NI] synonym: "acropodium skeleton" EXACT [] @@ -308597,6 +320969,8 @@ relationship: skeleton_of UBERON:0012354 ! acropodium region id: UBERON:0010544 name: metacarpus skeleton def: "The metacarpus is the intermediate part of the manus skeleton that is located between the phalanges (bones of the fingers) distally and the carpus which forms the connection to the forearm. The metacarpus consists of metacarpal bones. The metacarpals form a transverse arch to which the rigid row of distal carpal bones are fixed. The peripheral metacarpals (those of the thumb and little finger) form the sides of the cup of the palmar gutter and as they are brought together they deepen this concavity. The index metacarpal is the most firmly fixed, while the thumb metacarpal articulates with the trapezium and acts independently from the others. The middle metacarpals are tightly united to the carpus by intrinsic interlocking bone elements at their bases. The ring metacarpal forms a transitional element of the semi-independent last metacarpal. [WP,unvetted]." [Wikipedia:Metacarpus] +subset: human_subset +subset: mouse_subset synonym: "anterior metapodial skeleton" EXACT [] synonym: "anterior metapodium" RELATED [VSAO:0005026, VSAO:NI] synonym: "fore metapodial skeleton" RELATED [] @@ -308635,6 +321009,8 @@ property_value: external_definition "Segment of the forearm corresponding to the id: UBERON:0010545 name: metatarsus skeleton def: "Limb segment that consists of the long bones of the pes. The metatarsals are analogous to the metacarpal bones of the manus." [Wikipedia:Metatarsus] +subset: human_subset +subset: mouse_subset synonym: "metatarsal bones set" EXACT [FMA:71340] synonym: "metatarsal skeleton" EXACT [] synonym: "metatarsalia" RELATED [] @@ -308669,6 +321045,8 @@ property_value: external_definition "Segment of the leg corresponding to the met id: UBERON:0010546 name: metapodial skeleton def: "Subdivision of skeleton that corresponds to metapodium region, between acropodial skeleton and mesopdoial skeleton." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "metacarpal/metatarsal skeleton" EXACT [] synonym: "metapodial skeleton" EXACT [VSAO:0005025] synonym: "metapodium" RELATED [VSAO:0005025, VSAO:NI] @@ -308693,6 +321071,8 @@ property_value: external_definition "Endochondral bone complex located between t id: UBERON:0010547 name: pedal digit 1 metatarsal pre-cartilage condensation def: "A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 1 metatarsal pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 metatarsal pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit I metatarsal pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -308709,6 +321089,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010548 name: pedal digit 2 metatarsal pre-cartilage condensation def: "A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 2 metatarsal pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 2 metatarsal pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit II metatarsal pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -308725,6 +321107,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010549 name: pedal digit 3 metatarsal pre-cartilage condensation def: "A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 3 metatarsal pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 3 metatarsal pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit III metatarsal pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -308741,6 +321125,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010550 name: pedal digit 4 metatarsal pre-cartilage condensation def: "A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 4 metatarsal pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 4 metatarsal pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit IV metatarsal pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -308757,6 +321143,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010551 name: pedal digit 5 metatarsal pre-cartilage condensation def: "A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 5 metatarsal pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 5 metatarsal pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit V metatarsal pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -308773,6 +321161,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010557 name: pedal digit 1 metatarsal cartilage element def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 1 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 metatarsal cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit I metatarsal cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -308789,6 +321179,8 @@ relationship: develops_from UBERON:0010547 ! pedal digit 1 metatarsal pre-cartil id: UBERON:0010558 name: pedal digit 2 metatarsal cartilage element def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 2 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 2 metatarsal cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit II metatarsal cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -308805,6 +321197,8 @@ relationship: develops_from UBERON:0010548 ! pedal digit 2 metatarsal pre-cartil id: UBERON:0010559 name: pedal digit 3 metatarsal cartilage element def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 3 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 3 metatarsal cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit III metatarsal cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -308821,6 +321215,8 @@ relationship: develops_from UBERON:0010549 ! pedal digit 3 metatarsal pre-cartil id: UBERON:0010560 name: pedal digit 4 metatarsal cartilage element def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 4 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 4 metatarsal cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit IV metatarsal cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -308837,6 +321233,8 @@ relationship: develops_from UBERON:0010550 ! pedal digit 4 metatarsal pre-cartil id: UBERON:0010561 name: pedal digit 5 metatarsal cartilage element def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 5 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 5 metatarsal cartilage element" EXACT [OBOL:accepted] synonym: "pedal digit V metatarsal cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -308853,6 +321251,8 @@ relationship: develops_from UBERON:0010551 ! pedal digit 5 metatarsal pre-cartil id: UBERON:0010562 name: pedal digit 1 mesenchyme def: "Mesenchyme that is part of a developing pedal digit 1." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 1 mesenchyme" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 mesenchyme" EXACT [OBOL:accepted] synonym: "pedal digit I mesenchyme" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -308867,6 +321267,8 @@ relationship: part_of UBERON:0003631 ! pedal digit 1 id: UBERON:0010564 name: manual digit 1 mesenchyme def: "Mesenchyme that is part of a developing manual digit 1." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fore limb digit 1 mesenchyme" EXACT [OBOL:accepted] synonym: "hand digit 1 mesenchyme" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit I mesenchyme" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -308881,6 +321283,8 @@ relationship: part_of UBERON:0001463 ! manual digit 1 id: UBERON:0010565 name: manual digit 1 metacarpus pre-cartilage condensation def: "A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 1 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "finger 1 metacarpus pre-cartilage condensation" EXACT [EHDAA2:0000515] synonym: "fore limb digit 1 metacarpus pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 1 metacarpus pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] @@ -308898,6 +321302,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010566 name: manual digit 2 metacarpus pre-cartilage condensation def: "A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 2 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "finger 2 metacarpus pre-cartilage condensation" EXACT [EHDAA2:0000521] synonym: "fore limb digit 2 metacarpus pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 2 metacarpus pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] @@ -308915,6 +321321,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010567 name: manual digit 3 metacarpus pre-cartilage condensation def: "A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 3 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "finger 3 metacarpus pre-cartilage condensation" EXACT [EHDAA2:0000527] synonym: "fore limb digit 3 metacarpus pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 3 metacarpus pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] @@ -308932,6 +321340,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010568 name: manual digit 4 metacarpus pre-cartilage condensation def: "A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 4 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "finger 4 metacarpus pre-cartilage condensation" EXACT [EHDAA2:0000533] synonym: "fore limb digit 4 metacarpus pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 4 metacarpus pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] @@ -308949,6 +321359,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010569 name: manual digit 5 metacarpus pre-cartilage condensation def: "A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 5 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "finger 5 metacarpus pre-cartilage condensation" EXACT [EHDAA2:0000539] synonym: "fore limb digit 5 metacarpus pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 5 metacarpus pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] @@ -308966,6 +321378,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010570 name: manual digit 1 metacarpus cartilage element def: "A manual digit metacarpus cartilage element that is part of a manual digit 1 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "finger 1 metacarpus cartilage element" EXACT [EHDAA2:0000514] synonym: "fore limb digit 1 metacarpus cartilage element" EXACT [OBOL:accepted] synonym: "hand digit 1 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] @@ -308984,6 +321398,8 @@ relationship: develops_from UBERON:0010565 ! manual digit 1 metacarpus pre-carti id: UBERON:0010571 name: manual digit 2 metacarpus cartilage element def: "A manual digit metacarpus cartilage element that is part of a manual digit 2 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "finger 2 metacarpus cartilage element" EXACT [EHDAA2:0000520] synonym: "fore limb digit 2 metacarpus cartilage element" EXACT [OBOL:accepted] synonym: "hand digit 2 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] @@ -309002,6 +321418,8 @@ relationship: develops_from UBERON:0010566 ! manual digit 2 metacarpus pre-carti id: UBERON:0010572 name: manual digit 3 metacarpus cartilage element def: "A manual digit metacarpus cartilage element that is part of a manual digit 3 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "finger 3 metacarpus cartilage element" EXACT [EHDAA2:0000526] synonym: "fore limb digit 3 metacarpus cartilage element" EXACT [OBOL:accepted] synonym: "hand digit 3 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] @@ -309020,6 +321438,8 @@ relationship: develops_from UBERON:0010567 ! manual digit 3 metacarpus pre-carti id: UBERON:0010573 name: manual digit 4 metacarpus cartilage element def: "A manual digit metacarpus cartilage element that is part of a manual digit 4 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "finger 4 metacarpus cartilage condensation" EXACT [EHDAA2:0000532] synonym: "fore limb digit 4 metacarpus cartilage element" EXACT [OBOL:accepted] synonym: "hand digit 4 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] @@ -309038,6 +321458,8 @@ relationship: develops_from UBERON:0010568 ! manual digit 4 metacarpus pre-carti id: UBERON:0010574 name: manual digit 5 metacarpus cartilage element def: "A manual digit metacarpus cartilage element that is part of a manual digit 5 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "finger 5 metacarpus cartilage condensation" EXACT [EHDAA2:0000538] synonym: "fore limb digit 5 metacarpus cartilage element" EXACT [OBOL:accepted] synonym: "hand digit 5 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] @@ -309056,6 +321478,8 @@ relationship: develops_from UBERON:0010569 ! manual digit 5 metacarpus pre-carti id: UBERON:0010575 name: manual digit 1 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a manual digit 1 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fore limb digit 1 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 1 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit I phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309071,6 +321495,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010576 name: manual digit 2 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a manual digit 2 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fore limb digit 2 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 2 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit II phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309086,6 +321512,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010577 name: manual digit 3 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a manual digit 3 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fore limb digit 3 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 3 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit III phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309101,6 +321529,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010578 name: manual digit 4 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a manual digit 4 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fore limb digit 4 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 4 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit IV phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309116,6 +321546,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010579 name: manual digit 5 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a manual digit 5 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fore limb digit 5 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 5 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit V phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309131,6 +321563,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010580 name: pedal digit 1 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 1 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit I phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309146,6 +321580,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010581 name: pedal digit 2 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 2 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 2 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit II phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309161,6 +321597,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010582 name: pedal digit 3 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 3 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 3 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit III phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309176,6 +321614,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010583 name: pedal digit 4 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 4 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 4 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit IV phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309191,6 +321631,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010584 name: pedal digit 5 phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 5 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 5 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit V phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309206,6 +321648,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010585 name: pedal digit phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a pedal digit mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "foot phalanx pre-cartilage condensation" EXACT [VHOG:0000952] synonym: "hind limb digit phalanx pre-cartilage condensation" EXACT [OBOL:accepted] @@ -309224,6 +321668,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010586 name: manual digit phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a manual digit mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fore limb digit phalanx pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "forelimb phalanx pre-cartilage condensation" EXACT [] synonym: "hand digit phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] @@ -309242,6 +321688,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010675 name: manual digit 1 phalanx cartilage element def: "A cartilage element that is part of a manual digit 1 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fore limb digit 1 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 1 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit I phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309257,6 +321705,8 @@ relationship: develops_from UBERON:0010575 ! manual digit 1 phalanx pre-cartilag id: UBERON:0010676 name: manual digit 2 phalanx cartilage element def: "A cartilage element that is part of a manual digit 2 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fore limb digit 2 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 2 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit II phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309272,6 +321722,8 @@ relationship: develops_from UBERON:0010576 ! manual digit 2 phalanx pre-cartilag id: UBERON:0010677 name: manual digit 3 phalanx cartilage element def: "A cartilage element that is part of a manual digit 3 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fore limb digit 3 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 3 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit III phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309287,6 +321739,8 @@ relationship: develops_from UBERON:0010577 ! manual digit 3 phalanx pre-cartilag id: UBERON:0010678 name: manual digit 4 phalanx cartilage element def: "A cartilage element that is part of a manual digit 4 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fore limb digit 4 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 4 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit IV phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309302,6 +321756,8 @@ relationship: develops_from UBERON:0010578 ! manual digit 4 phalanx pre-cartilag id: UBERON:0010679 name: manual digit 5 phalanx cartilage element def: "A cartilage element that is part of a manual digit 5 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fore limb digit 5 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit 5 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit V phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309317,6 +321773,8 @@ relationship: develops_from UBERON:0010579 ! manual digit 5 phalanx pre-cartilag id: UBERON:0010680 name: pedal digit 1 phalanx cartilage element def: "A cartilage element that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 1 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit I phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309332,6 +321790,8 @@ relationship: develops_from UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage id: UBERON:0010681 name: pedal digit 2 phalanx cartilage element def: "A cartilage element that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 2 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 2 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit II phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309347,6 +321807,8 @@ relationship: develops_from UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage id: UBERON:0010682 name: pedal digit 3 phalanx cartilage element def: "A cartilage element that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 3 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 3 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit III phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309362,6 +321824,8 @@ relationship: develops_from UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage id: UBERON:0010683 name: pedal digit 4 phalanx cartilage element def: "A cartilage element that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 4 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 4 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit IV phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309377,6 +321841,8 @@ relationship: develops_from UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage id: UBERON:0010684 name: pedal digit 5 phalanx cartilage element def: "A cartilage element that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 5 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 5 phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "pedal digit V phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309392,6 +321858,8 @@ relationship: develops_from UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage id: UBERON:0010685 name: pedal digit phalanx cartilage element def: "A cartilage element that is part of a pedal digit mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:32948 @@ -309407,6 +321875,8 @@ relationship: develops_from UBERON:0010585 ! pedal digit phalanx pre-cartilage c id: UBERON:0010686 name: manual digit phalanx cartilage element def: "A cartilage element that is part of a manual digit mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fore limb digit phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:32658 @@ -309421,6 +321891,8 @@ relationship: develops_from UBERON:0010586 ! manual digit phalanx pre-cartilage [Term] id: UBERON:0010687 name: pedal digit metatarsal pre-cartilage condensation +subset: human_subset +subset: mouse_subset synonym: "foot digit metatarsal pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit metatarsal pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "metatarsal bone pre-cartilage condensation" EXACT [] @@ -309441,6 +321913,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010688 name: skeleton of manual acropodium def: "The subdivision of the skeleton that consists of all the skeletal elements at the distalmost end of the manual autopodium - i.e. the bones of the hands or their cartilaginous precursors[VSAO,modified]." [https://orcid.org/0000-0002-6601-2165, VSAO:0005029, VSAO:NI] +subset: human_subset +subset: mouse_subset synonym: "all phalanges in forelimb autopod" EXACT [] synonym: "anterior acropodium" RELATED [VSAO:0005029, VSAO:NI] synonym: "anterior acropodium skeleton" EXACT [] @@ -309468,6 +321942,8 @@ relationship: proximally_connected_to UBERON:0010544 ! metacarpus skeleton id: UBERON:0010690 name: manual digit 1 epithelium def: "An epithelium that is part of a manual digit 1." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fore limb digit 1 epithelium" EXACT [OBOL:accepted] synonym: "hand digit 1 epithelium" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "manual digit I epithelium" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309482,6 +321958,8 @@ relationship: part_of UBERON:0001463 ! manual digit 1 id: UBERON:0010693 name: pedal digit 1 epithelium def: "An epithelium that is part of a pedal digit 1." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot digit 1 epithelium" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 epithelium" EXACT [OBOL:accepted] synonym: "pedal digit I epithelium" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -309496,6 +321974,8 @@ relationship: part_of UBERON:0003631 ! pedal digit 1 id: UBERON:0010695 name: mesenchyme of tarsal region def: "Mesenchyme of the carpal region that contributes to the tarsal skeleton." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: EMAPA:18502 is_a: UBERON:0003860 ! hindlimb mesenchyme intersection_of: UBERON:0003104 ! mesenchyme @@ -309506,6 +321986,8 @@ relationship: part_of UBERON:0004454 ! tarsal region id: UBERON:0010696 name: skeleton of pedal acropodium def: "The subdivision of the skeleton that consists of all the skeletal elements at the distalmost end of the pedal autopodium - i.e. the bones of the foot or their cartilaginous precursors[cjm]." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "all phalanges in hindlimb autopod" EXACT [] synonym: "foot digit skeleton" EXACT [] synonym: "hind acropodium skeleton" EXACT [] @@ -309530,6 +322012,8 @@ relationship: proximally_connected_to UBERON:0010545 ! metatarsus skeleton [Term] id: UBERON:0010697 name: pedal digit metatarsal cartilage element +subset: human_subset +subset: mouse_subset synonym: "foot digit metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit metatarsal cartilage condensation" EXACT [OBOL:accepted] synonym: "metatarsal cartilage condensation" RELATED [EMAPA:32951] @@ -309545,6 +322029,8 @@ property_value: editor_note "EMAPA represents the specific child classes as bein [Term] id: UBERON:0010698 name: manual digit metacarpus pre-cartilage condensation +subset: human_subset +subset: mouse_subset synonym: "fore limb digit metacarpus pre-cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit metacarpus pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "metacarpal bone pre-cartilage condensation" EXACT [VHOG:0000953] @@ -309561,6 +322047,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation [Term] id: UBERON:0010699 name: manual digit metacarpus cartilage element +subset: human_subset +subset: mouse_subset synonym: "finger metacarpus cartilage element" EXACT [] synonym: "fore limb digit metacarpus cartilage element" EXACT [OBOL:accepted] synonym: "hand digit metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] @@ -309578,6 +322066,8 @@ relationship: develops_from UBERON:0010698 ! manual digit metacarpus pre-cartila [Term] id: UBERON:0010700 name: phalanx pre-cartilage condensation +subset: human_subset +subset: mouse_subset xref: EMAPA:32720 is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0015023 ! phalanx endochondral element @@ -309589,6 +322079,8 @@ relationship: part_of UBERON:0010702 {source="EMAPA"} ! digit mesenchyme [Term] id: UBERON:0010701 name: phalanx cartilage element +subset: human_subset +subset: mouse_subset synonym: "phalanx cartilage condensation" EXACT [EMAPA:32721] xref: EMAPA:32721 is_a: UBERON:0015023 ! phalanx endochondral element @@ -309602,6 +322094,8 @@ relationship: develops_from UBERON:0010700 ! phalanx pre-cartilage condensation id: UBERON:0010702 name: digit mesenchyme def: "Mesenchyme of the digit region." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digital ray" RELATED [NCIT:C34141] xref: EMAPA:32719 xref: NCIT:C34141 @@ -309615,6 +322109,8 @@ relationship: part_of UBERON:0002544 ! digit id: UBERON:0010703 name: forelimb zeugopod skeleton def: "The collection of all skeletal elements in an forelimb zeugopod region." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "antebrachial skeleton" EXACT [] synonym: "antebrachium skeleton" EXACT [PHENOSCAPE:ni] synonym: "anterior zeugopodium" RELATED [VSAO:0005011, VSAO:NI] @@ -309645,6 +322141,8 @@ property_value: external_definition "Segment of the forearm corresponding to the id: UBERON:0010704 name: parenchyma of quadrate lobe of liver def: "A liver parenchyma that is part of a quadrate lobe of liver." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "liver right quadrate lobe parenchyma" EXACT [EHDAA2:0001014] synonym: "parenchyma of quadrate lobe" EXACT [EMAPA:18320] xref: EHDAA2:0001014 @@ -309659,6 +322157,8 @@ relationship: part_of UBERON:0001116 ! quadrate lobe of liver id: UBERON:0010706 name: parenchyma of caudate lobe of liver def: "A liver parenchyma that is part of a caudate lobe of liver." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "liver right caudate lobe parenchyma" EXACT [EHDAA2:0001007] synonym: "parenchyma of caudate lobe" EXACT [EMAPA:18315] xref: EHDAA2:0001007 @@ -309674,6 +322174,8 @@ relationship: part_of UBERON:0001117 ! caudate lobe of liver id: UBERON:0010707 name: appendage girdle complex def: "An organism subdivision that includes both an appendage and its associated girdle region. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." [https://github.com/obophenotype/uberon/wiki/Appendages-and-the-appendicular-skeleton, https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "appendage complex" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "appendage-girdle complex" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -309699,6 +322201,8 @@ creation_date: 2012-04-23T10:46:51Z id: UBERON:0010708 name: pectoral complex def: "Appendage girdle complex that when present, encompasses the pectoral appendicular skeleton and the pectoral girdle." [VSAO:0000213] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "pectoral appendage/girdle complex" EXACT [VSAO:0000213] synonym: "pectoral girdle plus anterior limb or fin" EXACT [https://orcid.org/0000-0002-6601-2165] @@ -309723,6 +322227,8 @@ property_value: external_ontology_notes "note that the FMA uses the terms 'upper id: UBERON:0010709 name: pelvic complex def: "Appendage girdle complex that when present, encompasses the pelvic appendicular skeleton and the pelvic girdle." [VSAO:0000215] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lower limb" RELATED INCONSISTENT [FMA:7184] synonym: "lower limb and pelvic girdle" RELATED HUMAN_PREFERRED [https://orcid.org/0000-0002-6601-2165] @@ -309780,6 +322286,8 @@ property_value: external_ontology_notes "the girdle is part of the pelvic fin sk id: UBERON:0010712 name: limb skeleton subdivision def: "Skeletal subdivision that is a segment of the limb skeleton." [VSAO:0005018, VSAO:NI] +subset: human_subset +subset: mouse_subset xref: VSAO:0005018 is_a: UBERON:0010912 ! subdivision of skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton @@ -309809,6 +322317,8 @@ property_value: external_definition "Skeletal system that consists of the paired id: UBERON:0010714 name: iliac cartilage element def: "An iliac endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "iliac cartilage condensation" RELATED [EMAPA:18347] xref: EHDAA2:0000808 xref: EMAPA:18347 @@ -309826,6 +322336,8 @@ relationship: part_of UBERON:0007832 {source="EHDAA2"} ! pelvic girdle skeleton id: UBERON:0010718 name: pubic cartilage element def: "A pubic endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pubic cartilage condensation" RELATED [EMAPA:26928] xref: EHDAA2:0001573 xref: EMAPA:26928 @@ -309842,6 +322354,8 @@ relationship: part_of UBERON:0007832 {source="EHDAA2"} ! pelvic girdle skeleton id: UBERON:0010719 name: girdle skeleton def: "The subdivision of the skeleton of either the pectoral or pelvic girdle." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "skeleton of girdle" EXACT [] xref: AAO:0010686 xref: VSAO:0000302 @@ -309861,6 +322375,8 @@ property_value: external_definition "Skeletal subdivision that is part of the ap id: UBERON:0010720 name: hindlimb zeugopod skeleton def: "Subdivision of skeleton consisting of all skeletal elements in an hindlimb zeugopod region. Typically consists of the tibia and the fibula." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "crural skeleton" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "crus skeleton" EXACT [PHENOSCAPE:ni] synonym: "hind epipodium" RELATED [AAO:0000216] @@ -309884,6 +322400,8 @@ property_value: external_definition "Segment of the leg corresponding to the tib id: UBERON:0010721 name: distal tarsal bone def: "There are three cuneiform bones in the human foot: the medial cuneiform the intermediate cuneiform also known as the middle the lateral cuneiform. They are located between the navicular bone and the first, second and third metatarsal bones and are medial to the cuboid bone[WP, unvetted, human specific]." [Wikipedia:Cuneiform_(anatomy)] +subset: human_subset +subset: mouse_subset synonym: "cuneiform" RELATED [] synonym: "cuneiform bone" EXACT [FMA:24517] synonym: "distal tarsal" EXACT [AAO:0000914] @@ -309913,6 +322431,8 @@ property_value: external_definition "Series of elements that articulate with the id: UBERON:0010722 name: accessory bone def: "A bone which does not occur frequently in the body but is still present in a significantly large number of organisms." [Wikipedia:Accessory_bone] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Accessory_bone is_a: UBERON:0001474 ! bone element @@ -309920,6 +322440,8 @@ is_a: UBERON:0001474 ! bone element id: UBERON:0010723 name: os vesalianum pedis def: "An accessory bone located proximal to the base of the fifth metatarsal. Its prevalence has been reported to be from 0.1% to 1.0%. This bone is found within the peroneus brevis tendon and is considered to be asymptomatic in the majority of people." [PMID:16291851] +subset: human_subset +subset: mouse_subset synonym: "pedal vesalian bone" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "vesalian bone" BROAD [] xref: SCTID:182149003 @@ -309930,6 +322452,8 @@ is_a: UBERON:0010722 ! accessory bone id: UBERON:0010724 name: lateral tubercle of talus def: "An accessory bone tubercle which if present lies posterior to the talus." [Wikipedia:Os_trigonum] +subset: human_subset +subset: mouse_subset synonym: "accessory talus" EXACT [Wikipedia:Os_trigonum] synonym: "os trigonum" EXACT OMO:0003011 [FMA:TA] synonym: "os trigonum of talus" EXACT [FMA:33655] @@ -309944,6 +322468,8 @@ relationship: part_of UBERON:0002387 ! pes id: UBERON:0010725 name: accessory navicular bone def: "An accessory bone of the pes that occasionally develops abnormally in front of the ankle towards the inside of the pes. This bone may be present in approximately 2.5% of the general population and is usually asymptomatic." [Wikipedia:Accessory_navicular_bone] +subset: human_subset +subset: mouse_subset xref: MESH:C536002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:118496000 xref: Wikipedia:Accessory_navicular_bone @@ -309954,6 +322480,8 @@ relationship: part_of UBERON:0002387 ! pes [Term] id: UBERON:0010726 name: os vesalianum manus +subset: human_subset +subset: mouse_subset synonym: "manual vesalian bone" EXACT [http://orcid.org/0000-0002-6601-2165] xref: http://www.anatomyatlases.org/AnatomicVariants/SkeletalSystem/Images/94.jpg is_a: UBERON:0001481 {source="cjm"} ! distal carpal bone @@ -309963,6 +322491,8 @@ is_a: UBERON:0010722 ! accessory bone id: UBERON:0010727 name: sutural bone def: "A piece of bone that is located within a suture in the cranium." [Wikipedia:Wormian_bones] +subset: human_subset +subset: mouse_subset synonym: "Wormian bone" EXACT [FMA:59327] xref: FMA:59327 xref: SCTID:272677004 @@ -309975,6 +322505,8 @@ relationship: part_of UBERON:0003685 ! cranial suture id: UBERON:0010728 name: sphenoid lesser wing pre-cartilage condensation def: "An orbitosphenoid endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0003449 is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm @@ -309991,6 +322523,8 @@ relationship: part_of UBERON:0009191 {source="EHDAA2"} ! sphenoid bone pre-carti id: UBERON:0010732 name: alisphenoid pre-cartilage condensation def: "An alisphenoid endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "sphenoid greater wing pre-cartilage condensation" EXACT [EHDAA2:0003448] xref: EHDAA2:0003448 is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation @@ -310009,6 +322543,8 @@ relationship: part_of UBERON:0009191 {source="EHDAA2"} ! sphenoid bone pre-carti id: UBERON:0010733 name: alisphenoid cartilage element def: "An alisphenoid endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "alisphenoid cartilage" RELATED [] synonym: "sphenoid greater wing cartilage condensation" EXACT [EHDAA2:0003450] xref: EHDAA2:0003450 @@ -310029,6 +322565,8 @@ relationship: part_of UBERON:0009193 {source="EHDAA2"} ! sphenoid cartilage elem id: UBERON:0010737 name: distal tarsal bone 4 def: "Endochondral tarsal bone articulating with centralia and metatarsal 4." [VSAO:0005055] +subset: human_subset +subset: mouse_subset synonym: "cuboideum" RELATED [VSAO:0005055] synonym: "distal tarsal 4" BROAD [VSAO:0005055] synonym: "os cuboideum" RELATED OMO:0003011 [NominaAnatomicaVeterinaria:2005] @@ -310054,6 +322592,8 @@ id: UBERON:0010738 name: distal tarsal bone 5 def: "Endochondral tarsal bone articulating with centralia and metatarsal 5." [VSAO:0005056] comment: We need to restrict the logical definition such that it is *only* connecting to metatarsal 5 +subset: human_subset +subset: mouse_subset synonym: "cuboideum" RELATED [VSAO:0005056] synonym: "distal tarsal 5" EXACT [VSAO:0005056] synonym: "tarsal 5" EXACT [AAO:0000933] @@ -310074,6 +322614,8 @@ property_value: external_definition "Small element that articulates anteriorly w id: UBERON:0010739 name: distal carpal bone 5 def: "Endochondral carpal bone similar to distal carpal 4, but lost in most reptiles and mammals." [VSAO:0005047] +subset: human_subset +subset: mouse_subset synonym: "carpal 5" RELATED [AAO:0000851] synonym: "distal carpal 5" EXACT [VSAO:0005047] synonym: "hamate" RELATED [VSAO:0005047] @@ -310096,6 +322638,8 @@ property_value: taxon_notes "lost in most reptiles and mammals[VSAO]. Small elem id: UBERON:0010740 name: bone of appendage girdle complex def: "A bone that is part of an appendage girdle complex (i.e. any bone in a limb, fin or girdle)." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bone of extended limb/fin region" RELATED [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] synonym: "limb bone" RELATED [MA:0000688, UBERONREF:0000003] @@ -310112,6 +322656,8 @@ relationship: part_of UBERON:0010707 ! appendage girdle complex id: UBERON:0010741 name: bone of pectoral complex def: "A bone that is part of a pectoral complex. Examples: scapula, manus phalanx, any carpal bone, any bone of the pectoral fin." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bone of forelimb or pectoral fin or pectoral girdle" RELATED [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] synonym: "forelimb bone" RELATED [MA:0000612, UBERONREF:0000003] @@ -310130,6 +322676,8 @@ property_value: external_ontology_notes "note that the MA class includes girdle id: UBERON:0010742 name: bone of pelvic complex def: "A bone that is part of a pelvic complex. Examples: pubis, ischium, fot phalanx, any tarsal bone, any bone of the pelvic fin or girdle." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hindlimb bone" RELATED [MA:0000660, UBERONREF:0000003] xref: EMAPA:35934 @@ -310145,6 +322693,8 @@ property_value: external_ontology_notes "the MA class called 'hindlimb bone' bel id: UBERON:0010743 name: meningeal cluster def: "The collection of all meningeal layers that line a central nervous system." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebral meninges" EXACT [] synonym: "cluster of meninges" EXACT [FMA:231572] @@ -310170,6 +322720,8 @@ property_value: taxon_notes "In some primitive organisms, the meningeal cluster id: UBERON:0010744 name: sacral vertebra pre-cartilage condensation def: "A sacral vertebra endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "sacral vertebral pre-cartilage condensation group" EXACT [EHDAA2:0001774] xref: EHDAA2:0001774 xref: EMAPA:17677 @@ -310183,6 +322735,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010745 name: sacral vertebra cartilage element def: "A sacral vertebra endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "sacral vertebral cartilage condensation" EXACT [] synonym: "sacral vertebral cartilage condensation group" EXACT [EHDAA2:0001773] xref: EHDAA2:0001773 @@ -310199,6 +322753,8 @@ relationship: develops_from UBERON:0010744 {source="EHDAA2"} ! sacral vertebra p id: UBERON:0010746 name: iliac blade def: "The extension of the ilium above the level of the acetabulum. Attachment site for both hindlimb and caudal musculature. Medially is the site of attachment of the sacral ribs, where these exist[PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/69, PHENOSCAPE:ad] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "a. ossis ilii" EXACT OMO:0003011 [Wikipedia:Wing_of_ilium] synonym: "ala of ilium" EXACT [FMA:42826] @@ -310221,6 +322777,8 @@ property_value: taxon_notes "Often dorsally expanded in amniotes" xsd:string {so id: UBERON:0010747 name: body of ilium def: "The body of ilium enters into the formation of the acetabulum, of which it forms rather less than two-fifths. Its external surface is partly articular, partly non-articular; the articular segment forms part of the lunate surface of the acetabulum, the non-articular portion contributes to the acetabular fossa. The internal surface of the body is part of the wall of the lesser pelvis and gives origin to some fibers of the Obturator internus. Below, it is continuous with the pelvic surfaces of the ischium and pubis, only a faint line indicating the place of union." [Wikipedia:Body_of_ilium] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "corpus ossis ilii" RELATED OMO:0003011 [Wikipedia:Body_of_ilium] synonym: "ilium body" EXACT [FMA:42825] @@ -310235,6 +322793,8 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:0010748 name: lymph node follicle def: "A lymphoid follicle that is part of a lymph node." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "follicle of lymph node" EXACT [] xref: EMAPA:35527 xref: MA:0000742 @@ -310250,6 +322810,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l id: UBERON:0010749 name: middle pharyngeal constrictor def: "The middle pharyngeal constrictor is a fanshaped muscle, smaller than the Inferior pharyngeal constrictor muscle." [Wikipedia:Middle_pharyngeal_constrictor_muscle] +subset: human_subset +subset: mouse_subset synonym: "constrictor medius" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle] synonym: "constrictor pharyngis medius" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle] synonym: "constrictores pharyngis medius" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle] @@ -310297,6 +322859,8 @@ property_value: taxon_notes "It first evolved in the sarcopterygian clade Rhipid [Term] id: UBERON:0010751 name: squamous part of temporal bone primordium +subset: human_subset +subset: mouse_subset synonym: "squamosal bone primordium" EXACT [] synonym: "squamosal primordium" EXACT [] xref: EHDAA2:0001907 @@ -310312,6 +322876,8 @@ relationship: part_of UBERON:0004339 {source="EHDAA2", source="PMID:11523816"} ! id: UBERON:0010752 name: exoccipital cartilage element def: "An exoccipital endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:18339 is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005253 ! head mesenchyme @@ -310329,6 +322895,8 @@ id: UBERON:0010753 name: lymph node secondary follicle def: "A secondary follicle that is located in a lymph node." [CL:tm] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:35531 xref: FMA:312352 @@ -310347,6 +322915,8 @@ name: germinal center def: "A collection of activated B cells at the center of a secondary follicle, formed after B cells become activated and migrate to the center." [CL:tm, https://orcid.org/0000-0002-6601-2165, Wikipedia:Germinal_center] comment: A germinal center is a specialized microenvironment formed when activated B cells enter lymphoid follicles. Germinal centers are the foci for B cell proliferation and somatic hypermutation.[GO] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "central zone of follice" EXACT [CL:tm] synonym: "light zone of follicle" NARROW [CL:tm] synonym: "lymhpoid nodule" RELATED [CL:tm] @@ -310367,6 +322937,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/60/G id: UBERON:0010755 name: secondary follicle corona def: "The part of the secondary follicle that surrounds the germinal center." [CL:tm, https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "B cell corona" RELATED [] synonym: "dark zone of follicle" RELATED [CL:tm] synonym: "inactive zone of follicle" EXACT [CL:tm] @@ -310388,6 +322960,8 @@ id: UBERON:0010756 name: spleen follicular dendritic cell network def: "The enmeshed group of antigen presenting cells with extensive dendritic processes in the spleen B cell follicle that present antigen to B cells during an immune response." [MP:0008473] comment: The follicular dendritic cell network is often visualized by using the monoclonal antibody FDC-M2. +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "FDC network" BROAD [MP:0008473] synonym: "FDCN" BROAD [MP:0008473] @@ -310404,6 +322978,8 @@ name: rib 8 def: "The eighth rib counting from the top of the rib cage down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Rib_8] subset: defined_by_ordinal_series subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "costa VIII" EXACT OMO:0003011 [] synonym: "eighth rib" EXACT [FMA:8120] synonym: "upper false rib" NARROW [NCBITaxon:9606, PMCID:PMC1327870] @@ -310424,6 +323000,8 @@ property_value: taxon_notes "Typically a false rib in humans but may sometimes b id: UBERON:0010758 name: subdivision of organism along appendicular axis def: "A major subdivision of an organism that divides an organism along an axis perpedicular to the main body anterior-posterior axis. In vertebrates, this is typically a fin or limb segment. In insects, this includes segments of appendages such as antennae, as well as segments of the insect leg." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "appendage segment" EXACT [FBbt:00007018] synonym: "appendicular segment" EXACT [] @@ -310449,6 +323027,8 @@ relationship: part_of UBERON:0002470 ! autopod region id: UBERON:0010760 name: supraglenoid tubercle def: "The supraglenoid tubercle is a region of the scapula to which the long head of the biceps brachii muscle attaches." [Wikipedia:Supraglenoid_tubercle] +subset: human_subset +subset: mouse_subset synonym: "supraglenoid tuberosity" EXACT [FMA:23263] synonym: "tuberculum supraglenoidale" RELATED OMO:0003011 [Wikipedia:Supraglenoid_tubercle] xref: FMA:23263 @@ -310462,6 +323042,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a6/Gr id: UBERON:0010801 name: calcaneum pre-cartilage condensation def: "A calcaneum endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "calcaneous pre-cartilage condensation" EXACT [] xref: EMAPA:17736 is_a: UBERON:0005866 ! pre-cartilage condensation @@ -310477,6 +323059,8 @@ relationship: part_of UBERON:0009879 ! tarsal skeleton id: UBERON:0010842 name: calcaneum cartilage element def: "A calcaneum endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "calcaneous cartilage element" EXACT [] xref: EMAPA:18143 is_a: UBERON:0005863 ! cartilaginous condensation @@ -310493,6 +323077,8 @@ relationship: part_of UBERON:0009879 ! tarsal skeleton id: UBERON:0010843 name: clavicle cartilage element def: "A cartilaginous condensation that has the potential to develop into a clavicle." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:18342 is_a: UBERON:0005863 ! cartilaginous condensation intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -310506,6 +323092,8 @@ property_value: taxon_notes "In most birds and mammals the clavicles are the onl id: UBERON:0010844 name: clavicle pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a clavicle." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:18026 is_a: UBERON:0005866 ! pre-cartilage condensation intersection_of: UBERON:0005866 ! pre-cartilage condensation @@ -310518,6 +323106,8 @@ property_value: taxon_notes "In most birds and mammals the clavicles are the onl id: UBERON:0010846 name: radius pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a radius bone." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001586 is_a: UBERON:0003327 ! mesenchyme of forearm is_a: UBERON:0005866 ! pre-cartilage condensation @@ -310534,6 +323124,8 @@ property_value: editor_note "still to decide whether this is a distinct pre-cart id: UBERON:0010847 name: ulna pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a ulna." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0002100 xref: EHDAA:6226 is_a: UBERON:0003327 ! mesenchyme of forearm @@ -310550,6 +323142,8 @@ relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton id: UBERON:0010848 name: radius-ulna cartilage element def: "A radius-ulna endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "radio-ulna cartilage condensation" EXACT [EMAPA:17711] xref: EMAPA:17711 is_a: UBERON:0003327 ! mesenchyme of forearm @@ -310568,6 +323162,8 @@ property_value: external_ontology_notes "note that this is not represented as a id: UBERON:0010849 name: tibia cartilage element def: "A cartilaginous condensation that has the potential to develop into a tibia." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:18155 is_a: UBERON:0010885 ! hindlimb cartilage element is_a: UBERON:0015004 ! tibia endochondral element @@ -310582,6 +323178,8 @@ relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton id: UBERON:0010850 name: tibia pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a tibia." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0002036 is_a: UBERON:0005259 ! lower leg mesenchyme is_a: UBERON:0005866 ! pre-cartilage condensation @@ -310596,6 +323194,8 @@ relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton id: UBERON:0010851 name: fibula cartilage element def: "A cartilaginous condensation that has the potential to develop into a fibula." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fibulal cartilage condensation" EXACT [EMAPA:18154] synonym: "fibular cartilage condensation" EXACT [EMAPA:18154] synonym: "fibulra cartilage condensation" RELATED [EMAPA:18154] @@ -310613,6 +323213,8 @@ relationship: part_of UBERON:0005259 {source="EMAPA"} ! lower leg mesenchyme id: UBERON:0010852 name: fibula pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a fibula." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fibulal pre-cartilage condensation" EXACT [] synonym: "fibular pre-cartilage condensation" EXACT [] xref: EHDAA2:0000509 @@ -310631,6 +323233,8 @@ id: UBERON:0010853 name: capitulum of humerus def: "A smooth, rounded eminence on the lateral portion of the articular surface of the humerus. It articulates with the cupshaped depression on the head of the radius, and is limited to the front and lower part of the bone." [Wikipedia:Capitulum_of_the_humerus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "capitellum" RELATED [Wikipedia:Capitulum_of_the_humerus] synonym: "capitulum humeri" RELATED OMO:0003011 [Wikipedia:Capitulum_of_the_humerus] synonym: "capitulum of humerus" RELATED [Wikipedia:Capitulum_of_the_humerus] @@ -310652,6 +323256,8 @@ property_value: taxon_notes "The Capitulum humeri is present in Carnivora, more id: UBERON:0010854 name: skin of front of neck def: "A skin of neck that is part of a throat." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "skin of anterior neck" EXACT [FMA:23023] synonym: "skin of anterior part of neck" EXACT [FMA:23023] synonym: "skin of anterior portion of neck" EXACT [FMA:23023] @@ -310689,6 +323295,8 @@ relationship: part_of UBERON:0000023 ! wing id: UBERON:0010858 name: inter limb-segment region comment: Examples - region between digits in a human embryo; segments of a bat's patagium +subset: human_subset +subset: mouse_subset synonym: "interlimb" RELATED [] is_a: UBERON:0034929 ! external soft tissue zone relationship: connects UBERON:0002529 {cardinality="2"} ! limb segment @@ -310813,6 +323421,8 @@ is_a: UBERON:0010855 ! skin of forelimb wing id: UBERON:0010879 name: tusk def: "A calcareous tooth that is elongated and protrudes from the mouth." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: SCTID:54040005 xref: Wikipedia:Tusk is_a: UBERON:0001091 ! calcareous tooth @@ -310827,6 +323437,8 @@ property_value: external_definition "Elongated, continuously growing front teeth id: UBERON:0010880 name: gular fold def: "A transverse fold of skin across the throat (Peters 1964)." [http://imnh.isu.edu/digitalatlas/bio/glsry.htm, http://sourceforge.net/tracker/?func=detail&aid=3414172&group_id=76834&atid=994764] +subset: human_subset +subset: mouse_subset synonym: "gular sac" RELATED [Wikipedia:Gular_fold] synonym: "gular skin" RELATED [Wikipedia:Gular_fold] synonym: "throat sac" RELATED [Wikipedia:Gular_fold] @@ -310839,6 +323451,8 @@ relationship: present_in_taxon NCBITaxon:9590 {notes="gular sac", source="Wikipe id: UBERON:0010881 name: limb cartilage element def: "A skeletal element that is part of a limb and composed of cartilage tissue." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0007844 ! cartilage element is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0015061 ! limb endochondral element @@ -310850,6 +323464,8 @@ relationship: develops_from UBERON:0010882 ! limb bone pre-cartilage condensatio id: UBERON:0010882 name: limb bone pre-cartilage condensation def: "A skeletal element that is part of a limb and composed of pre-cartilage tissue." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0015061 ! limb endochondral element intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation @@ -310860,6 +323476,8 @@ id: UBERON:0010883 name: forelimb cartilage element def: "A cartilaginous condensation that has the potential to develop into a forelimb bone." [OBOL:automatic] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "forelimb wing cartilaginous condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] synonym: "wing cartilaginous condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] xref: EMAPA:32626 @@ -310875,6 +323493,8 @@ id: UBERON:0010884 name: forelimb bone pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a forelimb bone." [OBOL:automatic] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "wing bone pre-cartilage condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] xref: EMAPA:32625 is_a: UBERON:0010882 ! limb bone pre-cartilage condensation @@ -310887,6 +323507,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010885 name: hindlimb cartilage element def: "A cartilaginous condensation that has the potential to develop into a hindlimb bone." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hindlimb cartilage condensation" EXACT [EMAPA:32632] xref: EMAPA:32632 is_a: UBERON:0010881 ! limb cartilage element @@ -310900,6 +323522,8 @@ relationship: develops_from UBERON:0010886 ! hindlimb pre-cartilage condensation id: UBERON:0010886 name: hindlimb pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a hindlimb bone." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hindlimb pre-cartilage condensation" EXACT [EMAPA:32638] xref: EMAPA:32638 is_a: UBERON:0010882 ! limb bone pre-cartilage condensation @@ -310912,6 +323536,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0010887 name: tragus def: "A small pointed eminence of the external ear, situated in front of the concha, and projecting backward over the meatus." [Wikipedia:Tragus_(ear)] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "tragal part of pinna" EXACT [FMA:60998] xref: FMA:60998 @@ -310941,6 +323567,8 @@ consider: MIAA:0000152 id: UBERON:0010889 name: ectethmoid def: "Either of two lateral parts of the ethmoid bone that form part of the anterior wall of the orbit." [http://www.merriam-webster.com/medical/ectethmoid] +subset: human_subset +subset: mouse_subset synonym: "dorsal nasal capsule" EXACT [PMID:21270050] is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure @@ -310951,6 +323579,8 @@ property_value: taxon_notes "In avians, the mesethmoid supports upper beak forma id: UBERON:0010890 name: pelvic complex muscle def: "Muscles of the pelvic girdle, hindlimb or pelvic fin." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lower limb muscle" RELATED INCONSISTENT [FMA:9622] synonym: "muscle of lower limb" RELATED INCONSISTENT [FMA:9622] @@ -310973,6 +323603,8 @@ property_value: external_definition "Muscles of the pelvic girdle, thigh, leg (c id: UBERON:0010891 name: pectoral complex muscle def: "A muscle of a pectoral girdle, pectoral fin or anterior limb." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "muscle of pectoral girdle and limb" RELATED [] synonym: "muscle of pectoral girdle and wing" NARROW SENSU [NCBITaxon:8782] synonym: "muscle of upper limb" NARROW INCONSISTENT [FMA:9621] @@ -310994,6 +323626,8 @@ property_value: external_definition "Muscles of the pectoral girdle, arm, forear id: UBERON:0010892 name: mesethmoid element def: "An endochondral element of the nasal capsule that forms septum between nasal capsules and usually remains unossified in mammals." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "mesethmoid" RELATED [AAO:0000303] synonym: "ventral nasal capsule" EXACT [PMID:21270050] xref: AAO:0000303 @@ -311029,6 +323663,8 @@ id: UBERON:0010894 name: keratinous tooth comment: The hagfish's jawless mouth contains two parallel rows of pointed keratinous teeth subset: cyclostome_subset +subset: human_subset +subset: mouse_subset synonym: "horny denticle" EXACT [http://tolweb.org/Hyperoartia] is_a: UBERON:0003913 ! tooth-like structure intersection_of: UBERON:0003913 ! tooth-like structure @@ -311042,6 +323678,8 @@ relationship: present_in_taxon NCBITaxon:7762 ! Myxinidae id: UBERON:0010895 name: sequential hermaphroditic organism def: "Hermaphroditic organism that produces gametes first of one sex, and then later of the other sex." [CARO:0000045] +subset: human_subset +subset: mouse_subset synonym: "consecutive hermaphroditic organism" RELATED [CARO:0000045] xref: AAO:0010037 xref: BILA:0000045 @@ -311088,6 +323726,8 @@ property_value: taxon_notes "These bones may have been derived from the ventral id: UBERON:0010899 name: synchronous hermaphroditic organism def: "Hermaphroditic organism that produces both male and female gametes at the same time." [CARO:0000046] +subset: human_subset +subset: mouse_subset synonym: "serially hermaphroditic organism" RELATED [CARO:0000046] synonym: "simultaneous hermaphroditic organism" RELATED [https://orcid.org/0000-0002-6601-2165] xref: AAO:0010046 @@ -311155,6 +323795,8 @@ id: UBERON:0010905 name: clavicle bone primordium def: "A primordium that develops into a clavicle bone." [https://github.com/obophenotype/uberon/issues/327] comment: lateral part derives from a fish dermal bone while the medial part comes from a spur off the manubrium endochondral bone[JB] +subset: human_subset +subset: mouse_subset synonym: "clavicle primordium" EXACT [] xref: EHDAA2:0000254 is_a: UBERON:0001048 ! primordium @@ -311169,6 +323811,8 @@ relationship: part_of UBERON:0007831 {source="EHDAA2"} ! pectoral girdle skeleto id: UBERON:0010907 name: parafibula def: "Third bone of the lower leg, normally restricted to the area of the knee, in multuberculates, monotremes and some therians." [http://palaeos.com/vertebrates/glossary/glossaryP.html#P] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004251 ! hindlimb zeugopod bone relationship: in_taxon NCBITaxon:40674 {source="Palaeos"} ! Mammalia relationship: part_of UBERON:0003823 ! hindlimb zeugopod @@ -311189,6 +323833,8 @@ id: UBERON:0010910 name: opisthotic def: "Posterior ossification of the otic capsule." [AAO:0010835, http://palaeos.com/vertebrates/bones/braincase/opisthotic.html] comment: see TAO:0000474 - intercalar "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." +subset: human_subset +subset: mouse_subset xref: AAO:0010835 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ @@ -311201,6 +323847,8 @@ name: ossicle def: "Skeletal element that is often isolated, small, and variable in composition." [PSPUB:0000169, VSAO:0000132] comment: Ossicles are composed of a combination skeletal tissues, including bone, calcified cartilage, hyaline cartilage, etc, and exhibit variable development across species. Ossicles are not necessarily jointed, and examples include the menisci of synovial joints, 'Panda's thumb' (radial sesamoid), cardiac skeletal elements, sclerotic bones, middle ear ossicles, and sesamoids. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: VSAO:0000132 xref: Wikipedia:Ossicles is_a: UBERON:0004765 {source="VSAO"} ! skeletal element @@ -311210,6 +323858,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0010912 name: subdivision of skeleton def: "Anatomical cluster consisting of the skeletal elements (i.e. bone elements, cartilage elements, cartilage condensations) that are part of an individual subdivision of the organism. Excludes joints." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "skeletal subdivision" EXACT [VSAO:0000042] synonym: "subdivision of skeleton (in vivo)" RELATED [FMA:23879] @@ -311226,6 +323876,8 @@ id: UBERON:0010913 name: vertebral element alt_id: UBERON:0015005 def: "Skeletal element that forms around the notochord and is part of the vertebral column." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/294, VSAO:0000184] +subset: human_subset +subset: mouse_subset synonym: "vertebra element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "vertebra endochondral element" NARROW [https://github.com/obophenotype/uberon/issues/82] synonym: "vertebra skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] @@ -311242,6 +323894,8 @@ property_value: taxon_notes "Typically an endochondral element, in salamanders t [Term] id: UBERON:0010921 name: thyrohyoid ligament +subset: human_subset +subset: mouse_subset xref: FMA:55135 xref: NCIT:C33779 xref: SCTID:279551000 @@ -311253,6 +323907,8 @@ relationship: in_taxon NCBITaxon:7742 ! Vertebrata id: UBERON:0010925 name: median thyrohyoid ligament def: "The middle thicker part of the thyrohyoid membrane is termed the median thyrohyoid ligament (middle hyothyroid ligament, middle thyrohyoid ligament), its lateral thinner portions are pierced by the superior laryngeal vessels and the internal branch of the superior laryngeal nerve. Its anterior surface is in relation with the Thyreohyoideus, Sternohyoideus, and Omohyoideus, and with the body of the hyoid bone." [Wikipedia:Median_thyrohyoid_ligament] +subset: human_subset +subset: mouse_subset synonym: "ligamentum thyrohyoideum medianum" EXACT [] synonym: "middle thyrohyoid ligament" EXACT [FMA:55138] xref: FMA:55138 @@ -311266,6 +323922,8 @@ is_a: UBERON:0010921 {source="FMA"} ! thyrohyoid ligament id: UBERON:0010926 name: lateral thyrohyoid ligament def: "The lateral thyrohyoid ligament (lateral hyothyroid ligament) is a round elastic cord, which forms the posterior border of the hyothyroid membrane and passes between the tip of the superior cornu of the thyroid cartilage and the extremity of the greater cornu of the hyoid bone. The recurrent laryngeal nerve typical lies lateral to this ligament." [Wikipedia:Lateral_thyrohyoid_ligament] +subset: human_subset +subset: mouse_subset synonym: "ligamentum hyothyreoideum laterale" EXACT [] synonym: "ligamentum thyrohyoideum laterale" EXACT [] xref: FMA:55139 @@ -311279,6 +323937,8 @@ is_a: UBERON:0010921 {source="FMA"} ! thyrohyoid ligament id: UBERON:0010927 name: thyroepiglotticus muscle def: "Fibers of the thyroarytenoid muscle that continue to the margin of the epiglottis; it closes the inlet to the larynx." [http://medical-dictionary.thefreedictionary.com/thyroepiglottic+muscle, Wikipedia:Thyroepiglottic_muscle] +subset: human_subset +subset: mouse_subset synonym: "pars thyroepiglottica (musculus thyroarytenoideus)" EXACT [FMA:46594] synonym: "pars thyroepiglottica musculi thyroarytenoidei" RELATED OMO:0003011 [Wikipedia:Thyroepiglottic_muscle] synonym: "pars thyroepiglottica musculus thyroarytenoidei" EXACT OMO:0003011 [FMA:TA] @@ -311305,6 +323965,8 @@ name: cricopharyngeus muscle def: "The cricopharyngeus is a pharyngeal arch 4/6 muscle that participates in oral/pharyngeal behaviors and is innervated by the pharyngeal plexus and the recurrent laryngeal n. (from Vagus, CN X), and is an integral part of the pharyngeal tube, and attaches to the cricoid cartilage and the midline raphe. It acts as a sphincter between the pharynx and esophagus." [MFMO:0000009] comment: muscle belly subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cricopharyngeal part" BROAD [] synonym: "cricopharyngeal part of inferior constrictor pharyngeus" EXACT [FMA:46661] synonym: "cricopharyngeal part of inferior pharyngeal constrictor" EXACT [FMA:46661] @@ -311333,6 +323995,8 @@ property_value: external_definition "The cricopharyngeus is a pharyngeal arch 4/ [Term] id: UBERON:0010929 name: stapedius pre-muscle condensation +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001909 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation is_a: UBERON:0009506 ! mesenchyme of middle ear @@ -311342,6 +324006,8 @@ relationship: part_of UBERON:0001756 {source="EHDAA2"} ! middle ear [Term] id: UBERON:0010930 name: interhyoideus +subset: human_subset +subset: mouse_subset synonym: "interhyoideus muscle" EXACT [] xref: AAO:0010649 is_a: UBERON:0005493 ! hyoid muscle @@ -311355,6 +324021,8 @@ property_value: taxon_notes "the [mammalian] interhyoideus is homologous with th id: UBERON:0010931 name: intermandibularis def: "Is a mandibular muscle that develops into the ventral intermandibularis anterior and posterior muscles." [ZFA:0000369] +subset: human_subset +subset: mouse_subset synonym: "intermandibular muscle" RELATED [ZFIN:ZDB-PUB-060921-12] synonym: "intermandibularis muscle" EXACT [] xref: AAO:0010647 @@ -311370,6 +324038,8 @@ id: UBERON:0010932 name: crico-arytenoid muscle def: "Cricoarytenoid muscles are muscles that connect the cricoid cartilage and arytenoid cartilage. More specifically, it can refer to: Posterior cricoarytenoid muscle Lateral cricoarytenoid muscle." [Wikipedia:Cricoarytenoid_muscle] subset: grouping_class +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "crico-arytenoid" EXACT [Wikipedia:Cricoarytenoid_muscle] synonym: "cricoarytenoid" EXACT [Wikipedia:Cricoarytenoid_muscle] @@ -311395,6 +324065,8 @@ id: UBERON:0010933 name: orbicularis oris muscle def: "The orbicularis oris is a superficial facial muscle with fibers that encircle the opening of the oral cavity that attaches to the maxilla, mandible, skin and modiolus, and that participates in oral/pharyngeal behaviors, and is innervated by the facial nerve (CN VII)." [DOI:10.1002/ar.21355, DOI:10.1111/j.1469-7580.2009.01111.x, FEED:rd, http://www.feedexp.org/wiki/Mammalian_Muscle_Ontology_Workshop, MFMO:0000058] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "incisivii labii inferioris" RELATED [Wikipedia:Orbicularis_oris_muscle] synonym: "incisivii labii superioris" RELATED [Wikipedia:Orbicularis_oris_muscle] synonym: "musculus orbicularis oris" RELATED OMO:0003011 [Wikipedia:Orbicularis_oris_muscle] @@ -311430,6 +324102,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/473" xsd: [Term] id: UBERON:0010935 name: tensor tympani pre-muscle condensation +subset: human_subset +subset: mouse_subset xref: EHDAA2:0002002 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation is_a: UBERON:0009506 ! mesenchyme of middle ear @@ -311440,6 +324114,8 @@ relationship: part_of UBERON:0001756 {source="EHDAA2"} ! middle ear id: UBERON:0010936 name: thyropharyngeus muscle comment: muscle belly +subset: human_subset +subset: mouse_subset synonym: "musculus thyropharyngeus" EXACT OMO:0003011 [FMA:46658, FMA:TA] synonym: "pars thyropharyngea (musculus constrictor pharyngis inferior)" EXACT [FMA:46658] synonym: "pars thyropharyngea musculus constrictoris pharyngis inferioris" EXACT OMO:0003011 [FMA:TA] @@ -311461,6 +324137,8 @@ id: UBERON:0010937 name: salpingopharyngeus muscle def: "The salpingopharyngeus muscle arises from the inferior part of the cartilage of the pharyngotympanic tube (Eustachian tube) in the nasal cavity; it passes downward and blends with the posterior fasciculus of the palatopharyngeus muscle. The salpingopharyngeus is known to raise the pharynx and larynx during deglutition (swallowing) and laterally draws the pharyngeal walls up. In addition, it opens the pharyngeal orifice of the pharyngotympanic tube during swallowing. This allows for the equalization of pressure between the auditory canal and the pharynx. The salpingopharyngeus is innervated by the vagus nerve (CN X) via the pharyngeal plexus." [Wikipedia:Salpingopharyngeus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "musculus salpingopharyngeus" RELATED OMO:0003011 [Wikipedia:Salpingopharyngeus_muscle] synonym: "salpingopharyngeus" EXACT [Wikipedia:Salpingopharyngeus_muscle] xref: FMA:46665 @@ -311487,6 +324165,8 @@ property_value: external_definition "Salpingopharyngeus is a muscle that attache [Term] id: UBERON:0010938 name: muscle belly +subset: human_subset +subset: mouse_subset synonym: "belly" BROAD [FMA:9719] synonym: "belly of muscle" EXACT [] synonym: "venter" BROAD OMO:0003011 [FMA:TA] @@ -311498,6 +324178,8 @@ relationship: part_of UBERON:0001630 {source="FMA"} ! muscle organ [Term] id: UBERON:0010939 name: zygomaticomandibularis muscle +subset: human_subset +subset: mouse_subset synonym: "masseter, deep" RELATED [FEED:FEED] synonym: "zygomaticomandibularis" EXACT [FEED:FEED] synonym: "zygomaticomandibularis muscle" EXACT [] @@ -311511,6 +324193,8 @@ property_value: external_definition "The zygomaticomandibularis is a separable p id: UBERON:0010940 name: muscle of digastric group def: "Either of the two muscles that comprise the digastric group (anterior or posterior)." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "belly of digastric" NARROW [FMA:46297] synonym: "belly of digastric muscle" RELATED [FMA:46297] synonym: "digastric" RELATED [FMA:46291] @@ -311536,6 +324220,8 @@ name: anterior digastric muscle def: "The anterior digastric is a pharyngeal arch I muscle that participates in oral/pharygeal behaviors and is innervated by the nerve to mylohyoid (a branch of the third division of the trigeminal nerve), is attached to the mandible and to the hyoid apparatus, and it is superficial to mylohyoid muscle." [http://www.feedexp.org/, MFMO:0000073] subset: feed_aligned subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "anterior belly of digastric" EXACT [FMA:46302] synonym: "anterior belly of digastric muscle" EXACT [] synonym: "anterior digastric" EXACT [] @@ -311573,6 +324259,8 @@ id: UBERON:0010944 name: posterior digastric muscle def: "The posterior digastric is a pharyngeal arch II muscle that participates in oral pharyngeal behavior, is innervated by the digastric branch of facial nerve and attaches to the posterior cranial base and the hyoid apparatus. It is found superficial to the mylohyoid muscle." [MFMO:0000060] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "digastric, posterior" EXACT [FEED:FEED] synonym: "digastricus posterior" EXACT [] synonym: "digastricus posterior belly" EXACT [] @@ -311603,6 +324291,8 @@ id: UBERON:0010945 name: jugulohyoideus muscle def: "Runs from the processus jugularis to the os stylohyoideum; innervated with the ramus jugulohyoideus from the nervus facialis." [PMID:7839797] comment: See also: stylohyoid muscle +subset: human_subset +subset: mouse_subset synonym: "jugulohyoid" RELATED [] synonym: "jugulohyoideus" RELATED [] synonym: "musculus jugulohyoideus" RELATED [] @@ -311616,6 +324306,8 @@ id: UBERON:0010946 name: occipitofrontalis muscle def: "The occipitofrontalis or epicranius is a muscle which covers parts of the skull. It consists of two parts or bellies: The occipital belly, near the occipital bone, and the frontal belly, near the frontal bone." [Wikipedia:Occipitofrontalis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "epicranius" RELATED [Wikipedia:Occipitofrontalis_muscle] synonym: "musculus occipitofrontalis" RELATED OMO:0003011 [Wikipedia:Occipitofrontalis_muscle] synonym: "occipito-frontalis" RELATED [] @@ -311638,6 +324330,8 @@ property_value: external_ontology_notes "A zone of muscle in FMA" xsd:string {ex id: UBERON:0010947 name: occipitalis def: "A belly of the occipitofrontalis muscle that is near the occipital bone." [Wikipedia:Occipitofrontalis_muscle] +subset: human_subset +subset: mouse_subset synonym: "occipital belly of occipitofrontalis" EXACT [FMA:46758] synonym: "occipital part of occipitofrontalis" EXACT [FMA:46758] synonym: "venter occipitalis (musculus occipitofrontalis)" EXACT [FMA:46758] @@ -311654,6 +324348,8 @@ id: UBERON:0010948 name: cleidooccipital muscle def: "A muscle organ that attaches_to a clavicle and attaches_to a occipital bone." [OBOL:automatic] comment: Some studies have indicated a supernumerary cleido-occipital muscle more or less separate from the sterno-cleido-mastoid muscle; The frequency of cleido-occipital muscle occurrence has been reported up to 33% +subset: human_subset +subset: mouse_subset synonym: "cleido-occipitalis" EXACT [] synonym: "cleido-occipitalis muscle" EXACT [] synonym: "cleidooccipital" EXACT [MA:0002276] @@ -311672,6 +324368,8 @@ relationship: attaches_to UBERON:0001676 ! occipital bone id: UBERON:0010949 name: sternooccipital muscle def: "A muscle organ that has_muscle_insertion a occipital bone and has_muscle_origin a sternum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "sternooccipital" EXACT [MA:0002385] xref: EMAPA:37702 {source="MA:th"} xref: MA:0002385 @@ -311688,6 +324386,8 @@ relationship: has_muscle_origin UBERON:0000975 ! sternum id: UBERON:0010950 name: styloauricular muscle def: "An occasional small muscle extending from the root of the styloid process to the cartilage of the meatus of the ear." [http://www.mondofacto.com/facts/dictionary?musculus+styloauricularis] +subset: human_subset +subset: mouse_subset synonym: "mandibulo-auricularis" EXACT [] synonym: "mandibulo-auricularis muscle" EXACT [] synonym: "stylo-auricularis" EXACT [] @@ -311699,6 +324399,8 @@ is_a: UBERON:0002376 ! cranial muscle id: UBERON:0010951 name: interscutular muscle def: "A muscle that attaches to the base of the ear and to the middle of the skull." [PMID:19209956] +subset: human_subset +subset: mouse_subset synonym: "interscutularis" EXACT [] synonym: "musculus interscutularis" EXACT [] is_a: UBERON:0002376 ! cranial muscle @@ -311707,6 +324409,8 @@ is_a: UBERON:0002376 ! cranial muscle id: UBERON:0010952 name: frontalis muscle belly def: "A belly of the occipitofrontalis muscle that is near the frontal bone." [Wikipedia:Occipitofrontalis_muscle] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "frontal belly of occipitofrontalis" EXACT [FMA:46757] synonym: "frontal belly of occipitofrontalis muscle" RELATED [Wikipedia:Frontalis_muscle] @@ -311729,6 +324433,8 @@ id: UBERON:0010953 name: nasalis muscle def: "The nasalis (compressor naris) is a sphincter-like muscle of the nose whose function is to compress the nasal cartilage. It consists of two parts, transverse and alar: The transverse part arises from the maxilla, above and lateral to the incisive fossa; its fibers proceed upward and medially, expanding into a thin aponeurosis which is continuous on the bridge of the nose with that of the muscle of the opposite side, and with the aponeurosis of the Procerus. The alar part is attached at one end to the greater alar cartilage, and at the other to the integument at the point of the nose. Other sources divide it into 'Compressor nasalis' and 'Dilator nasalis'." [Wikipedia:Nasalis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "compressor naris" RELATED [Wikipedia:Nasalis_muscle] synonym: "compressor narium minor" RELATED [Wikipedia:Nasalis_muscle] synonym: "compressor nasi" RELATED [Wikipedia:Nasalis_muscle] @@ -311749,6 +324455,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/bb/Na id: UBERON:0010954 name: ceratohyoideus muscle def: "The ceratohyoideus is a muscle of Pharyngeal Arch III that participates in oral/pharyngeal behaviors and is innervated by the glossopharyngeal n. , and attaches to the ceratohyal part of the hyoid apparatus and also to a non-ceratohyal part of the hyoid apparatus.[FEED]." [http://www.feedexp.org] +subset: human_subset +subset: mouse_subset synonym: "ceratohyoideus" EXACT [FEED:FEED] xref: MFMO:0000006 is_a: UBERON:0000933 ! chordate pharyngeal muscle @@ -311758,6 +324466,8 @@ property_value: external_definition "The ceratohyoideus is a muscle of Pharyngea [Term] id: UBERON:0010955 name: trapezius pre-muscle mass +subset: human_subset +subset: mouse_subset xref: EHDAA2:0002079 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm @@ -311768,6 +324478,8 @@ relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and tho [Term] id: UBERON:0010956 name: pterygopharyngeal part of superior pharyngeal constrictor +subset: human_subset +subset: mouse_subset synonym: "pars pterygopharyngea (musculus constrictor pharyngis superior)" EXACT [FMA:46638] synonym: "pars pterygopharyngea musculus constrictoris pharyngis superioris" EXACT OMO:0003011 [FMA:46638, FMA:TA] synonym: "pterygopharyngeal part of superior constrictor pharyngeus" EXACT [FMA:46638] @@ -311780,6 +324492,8 @@ relationship: part_of UBERON:0006329 {source="FMA"} ! superior pharyngeal constr id: UBERON:0010958 name: arytenoid muscle def: "A single muscle, filling up the posterior concave surfaces of the arytenoid cartilages. It arises from the posterior surface and lateral border of one arytenoid cartilage, and is inserted into the corresponding parts of the opposite cartilage. It consists of oblique and transverse parts." [Wikipedia:Arytenoid_muscle] +subset: human_subset +subset: mouse_subset synonym: "aryepiglotticus muscle" RELATED [Wikipedia:Arytenoid_muscle] synonym: "arytaenoideus" RELATED OMO:0003011 [Wikipedia:Arytenoid_muscle] synonym: "arytaenoideus muscle" RELATED [Wikipedia:Arytenoid_muscle] @@ -311797,6 +324511,8 @@ property_value: editor_note "TODO - check child relationships" xsd:string id: UBERON:0010959 name: craniocervical muscle def: "Any muscle organ that is part of either the head or the neck." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "muscle of head and neck" RELATED [] synonym: "muscle of head or neck" EXACT [] xref: NCIT:C32716 @@ -311810,6 +324526,8 @@ relationship: part_of UBERON:0008229 {source="prolog"} ! craniocervical region m [Term] id: UBERON:0010961 name: erector spinae pre-muscle mass +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000455 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group @@ -311818,6 +324536,8 @@ relationship: part_of UBERON:0003897 {source="EHDAA2"} ! axial muscle [Term] id: UBERON:0010962 name: extensor pre-muscle mass +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000459 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group @@ -311826,6 +324546,8 @@ relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervica id: UBERON:0010963 name: trunk and cervical myotome group comment: isa row in EHDAA2 +subset: human_subset +subset: mouse_subset xref: EHDAA2:0003425 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003082 ! myotome @@ -311834,6 +324556,8 @@ relationship: part_of UBERON:0005256 {source="EHDAA2"} ! trunk mesenchyme [Term] id: UBERON:0010970 name: intercostal pre-muscle mass +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000843 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group @@ -311843,12 +324567,16 @@ relationship: part_of UBERON:0003897 {source="EHDAA2"} ! axial muscle [Term] id: UBERON:0010974 name: external intercostal pre-muscle mass +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000467 is_a: UBERON:0010970 {source="EHDAA2"} ! intercostal pre-muscle mass [Term] id: UBERON:0010975 name: external oblique pre-muscle mass +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000470 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme @@ -311857,6 +324585,8 @@ relationship: part_of UBERON:0002461 {source="EHDAA2"} ! anterior abdominal wall [Term] id: UBERON:0010977 name: flexor pre-muscle mass +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000543 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group @@ -311864,6 +324594,8 @@ relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervica [Term] id: UBERON:0010981 name: internal intercostal pre-muscle mass +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000876 is_a: UBERON:0010970 {source="EHDAA2"} ! intercostal pre-muscle mass relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group @@ -311871,6 +324603,8 @@ relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervica [Term] id: UBERON:0010982 name: latissimus dorsi pre-muscle mass +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000933 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation @@ -311880,6 +324614,8 @@ relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and tho [Term] id: UBERON:0010983 name: levator scapulae pre-muscle mass +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000993 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation @@ -311889,6 +324625,8 @@ relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and tho [Term] id: UBERON:0010984 name: pectoral pre-muscle mass +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001423 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation @@ -311898,6 +324636,8 @@ relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and tho [Term] id: UBERON:0010985 name: rhomboid pre-muscle mass +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001636 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation @@ -311907,6 +324647,8 @@ relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and tho [Term] id: UBERON:0010986 name: serratus ventralis pre-muscle mass +subset: human_subset +subset: mouse_subset synonym: "serratus anterior pre-muscle mass" EXACT [EHDAA2:0001833] xref: EHDAA2:0001833 xref: EHDAA:5992 @@ -311917,6 +324659,8 @@ relationship: part_of UBERON:0003897 {source="EHDAA2"} ! axial muscle [Term] id: UBERON:0010987 name: sterno-mastoid pre-muscle mass +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001913 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm @@ -311926,6 +324670,8 @@ relationship: part_of UBERON:0002376 {source="EHDAA2"} ! cranial muscle [Term] id: UBERON:0010988 name: teres major pre-muscle mass +subset: human_subset +subset: mouse_subset xref: EHDAA2:0002005 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation @@ -311936,6 +324682,8 @@ relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and tho id: UBERON:0010989 name: transverospinalis pre-muscle mass def: "A pre-muscle condensation that will develop into a transverospinalis muscle." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0002076 is_a: UBERON:0005865 ! pre-muscle condensation intersection_of: UBERON:0005865 ! pre-muscle condensation @@ -311948,6 +324696,8 @@ id: UBERON:0010990 name: transversospinales muscle def: "The transversospinal muscles are a group of muscles of the human back. Their combined action is rotation and extension of the vertebral column. They include: semispinalis, spanning 4-6 vertebral segments semispinalis dorsi semispinalis cervicis semispinalis capitis multifidus, spanning 2-4 vertebral segments rotatores, spanning 1-2 vertebral segments rotatores cervicis rotatores thoracis rotatores lumborum." [Wikipedia:Transversospinales_muscles] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "deep dorsal muscles" RELATED [Wikipedia:Transversospinales_muscles] synonym: "musculi transversospinales" RELATED OMO:0003011 [FMA:TA, Wikipedia:Transversospinales_muscles] synonym: "transverospinalis" EXACT [EHDAA2:0002075] @@ -311967,6 +324717,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7f/Gr [Term] id: UBERON:0010993 name: subscapularis pre-muscle mass +subset: human_subset +subset: mouse_subset xref: EMAPA:17750 is_a: UBERON:0005865 ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group @@ -311976,6 +324728,8 @@ id: UBERON:0010994 name: coronoid process of ulna def: "A triangular eminence projecting forward from the proximal epiphysis of the ulna[WP,modified]." [Wikipedia:Coronoid_process_of_the_ulna] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "coronoid process" BROAD [FMA:23616] synonym: "coronoid process of the ulna" EXACT [Wikipedia:Coronoid_process_of_the_ulna] synonym: "processus coronoideus" EXACT [FMA:23616] @@ -311995,6 +324749,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/60/Gr id: UBERON:0010995 name: deep part of masseter muscle subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "deep layer of masseter" EXACT [FMA:49003] synonym: "deep part of masseter" EXACT [FMA:49003] synonym: "masseter, deep" EXACT [] @@ -312016,6 +324772,8 @@ name: articular cartilage of joint def: "A thin layer of cartilage, usually hyaline, on the articular surface of bones in synovial joints." [BTO:0001572] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -312045,6 +324803,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011002 name: articular cartilage element def: "Cartilage of the lower jaw that give rise to a portion of the anguloarticular compound bone." [ZFA:0001644] +subset: human_subset +subset: mouse_subset synonym: "articular cartilages" BROAD OMO:0003004 [ZFA:0001644] xref: TAO:0001670 xref: ZFA:0001644 @@ -312055,6 +324815,8 @@ id: UBERON:0011004 name: pharyngeal arch cartilage def: "A cartilage element that is part of a splanchnocranium." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "pharyngeal arch cartilages" EXACT OMO:0003004 [ZFA:0001460] synonym: "splanchnocranium cartilage" EXACT [ZFA:0001460] xref: BTO:0006051 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} @@ -312071,6 +324833,8 @@ relationship: part_of UBERON:0008895 {source="ZFA"} ! splanchnocranium id: UBERON:0011005 name: endocardium of auricle def: "An endocardium that is part of a atrium auricular region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "auricle endocardium" EXACT [FMA:13234] xref: FMA:13234 is_a: UBERON:0002166 ! endocardium of atrium @@ -312083,6 +324847,8 @@ property_value: external_ontology_notes "EHDAA2 this is an epithelium that is pa id: UBERON:0011006 name: endocardium of left auricle def: "An endocardium that is part of a left atrium auricular region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left atrium auricular region endocardium" EXACT [EHDAA2:0000277] synonym: "left auricle endocardial tissue" RELATED [VHOG:0001231] synonym: "left auricle endocardium" EXACT [FMA:13236] @@ -312099,6 +324865,8 @@ relationship: part_of UBERON:0006630 ! left atrium auricular region id: UBERON:0011007 name: endocardium of right auricle def: "An endocardium that is part of a right atrium auricular region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "right auricle endocardium" EXACT [FMA:13235] xref: EHDAA2:0000292 xref: FMA:13235 @@ -312113,6 +324881,8 @@ id: UBERON:0011011 name: brachioradialis def: "Brachioradialis is a muscle of the forearm that acts to flex the forearm at the elbow. It is also capable of both pronation and supination, depending on the position of the forearm. It is attached to the distal styloid process of the radius by way of the brachioradialis tendon, and to the lateral supracondylar ridge of the humerus." [Wikipedia:Brachioradialis] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "brachioradialis muscle" EXACT [Wikipedia:Brachioradialis] synonym: "musculus brachioradialis" RELATED OMO:0003011 [Wikipedia:Brachioradialis] xref: FMA:38485 @@ -312132,6 +324902,7 @@ id: UBERON:0011012 name: flexor pollicis brevis muscle def: "The flexor pollicis brevis is a muscle in the hand that flexes the thumb. It is one of three thenar muscles. It has both a superficial part and a deep part." [Wikipedia:Flexor_pollicis_brevis_muscle] subset: human_reference_atlas +subset: human_subset synonym: "flexor pollicis brevis" EXACT [FMA:37378] synonym: "musculus flexor pollicis brevis" RELATED OMO:0003011 [Wikipedia:Flexor_pollicis_brevis_muscle] xref: FMA:37378 @@ -312149,6 +324920,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/ca/Mu id: UBERON:0011013 name: spinalis muscle def: "The spinalis is the portion of the erector spinae, a bundle of muscles and tendons, located nearest to the spine. It is divided into three parts. [WP,unvetted]." [Wikipedia:Spinalis] +subset: human_subset +subset: mouse_subset synonym: "medial column of erector spinae" RELATED [] synonym: "musculus spinalis" RELATED OMO:0003011 [Wikipedia:Spinalis] synonym: "spinal muscle" EXACT [BTO:0002621] @@ -312172,6 +324945,8 @@ id: UBERON:0011014 name: spinalis capitis muscle def: "Origin: spines of upper thoracic and lower cervical vertebrae; insertion: occipital bone; innervation: spinal nerves; action, extends head." [BTO:0002622] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "musculus spinalis capitis" RELATED [BTO:0002622] synonym: "spinal muscle of head" EXACT [BTO:0002622] synonym: "spinalis capitis" EXACT [FMA:22775] @@ -312185,6 +324960,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0011015 name: iliac fossa +subset: human_subset +subset: mouse_subset xref: FMA:75316 xref: NCIT:C103454 xref: SCTID:182341009 @@ -312197,6 +324974,8 @@ id: UBERON:0011016 name: pyramidalis def: "The pyramidalis is a small and triangular muscle, anterior to the Rectus abdominis, and contained in the rectus sheath." [Wikipedia:Pyramidalis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "musculus pyramidalis" RELATED OMO:0003011 [Wikipedia:Pyramidalis_muscle] synonym: "pyramidalis" RELATED [Wikipedia:Pyramidalis_muscle] synonym: "pyramidalis muscle" EXACT [FMA:15568] @@ -312214,6 +324993,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Gr id: UBERON:0011017 name: semispinalis muscle def: "A transversospinalis muscle of the human body." [Wikipedia:Semispinalis_muscle] +subset: human_subset +subset: mouse_subset synonym: "semispinalis" EXACT [Wikipedia:Semispinalis_muscle] xref: FMA:22823 xref: SCTID:244867006 @@ -312225,6 +325006,8 @@ id: UBERON:0011022 name: flexor hallucis brevis muscle def: "A muscle that originates from the cuboid bone and divides into two portions, which are inserted into the medial and lateral sides of the base of the first phalanx of the great toe, a sesamoid bone being present in each tendon at its insertion." [Wikipedia:Flexor_hallucis_brevis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "flexor digit I brevis" RELATED [EMAPA:36259] synonym: "flexor hallucis brevis" EXACT [FMA:37449] synonym: "flexor hallucis brevis muscle" EXACT [Wikipedia:Flexor_hallucis_brevis_muscle] @@ -312247,6 +325030,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/58/Mu id: UBERON:0011024 name: extrinsic extensor muscle of manus def: "The extrinsic extensor muscles of the hand are located in the back of the forearm and have long tendons connecting them to bones in the hand, where they exert their action." [Wikipedia:Extrinsic_extensor_muscles_of_the_hand] +subset: human_subset +subset: mouse_subset synonym: "extrinsic extensor muscle of hand" EXACT [Wikipedia:Extrinsic_extensor_muscles_of_the_hand] xref: Wikipedia:Extrinsic_extensor_muscles_of_the_hand is_a: UBERON:0000311 ! extensor muscle @@ -312261,6 +325046,8 @@ relationship: part_of UBERON:0002386 ! forelimb zeugopod id: UBERON:0011025 name: aryepiglotticus muscle def: "The aryepiglotticus is a muscle of the larynx running in the aryepiglottic fold from the arytenoid cartilage to the epiglottis." [Wikipedia:Aryepiglottic_muscle] +subset: human_subset +subset: mouse_subset synonym: "ary-epiglottic part of oblique arytenoid" EXACT [FMA:46602] synonym: "aryepiglottic" EXACT [] synonym: "aryepiglottic muscle" EXACT [FMA:46602] @@ -312286,6 +325073,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Mu id: UBERON:0011043 name: obturator muscle def: "One of: obturator externus or obturator internus." [Wikipedia:Obturator_muscles] +subset: human_subset +subset: mouse_subset synonym: "obturator" BROAD [] xref: EMAPA:36235 xref: FMA:19083 @@ -312299,6 +325088,8 @@ is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle id: UBERON:0011048 name: obturator internus def: "The obturator internus muscle originates on the medial surface of the obturator membrane, the ischium near the membrane, and the rim of the pubis. It exits the pelvic cavity through the lesser sciatic foramen. The obturator internus is situated partly within the lesser pelvis, and partly at the back of the hip-joint. It functions to help laterally rotate extended thigh and abduct flexed thigh, as well as to steady the femoral head in the acetabulum." [Wikipedia:Obturator_internus_muscle] +subset: human_subset +subset: mouse_subset synonym: "internal obturator" EXACT [FMA:22298] synonym: "internus obturator" RELATED [Wikipedia:Obturator_internus_muscle] synonym: "musculus obturator internus" EXACT [FMA:22298] @@ -312324,6 +325115,8 @@ property_value: external_ontology_notes "Definition generalized to accommodate A id: UBERON:0011049 name: uterovesical pouch def: "The peritoneum over the rectum and the bladder is continued over the intestinal surface and fundus of the uterus on to its vesical surface, which it covers as far as the junction of the body and cervix uteri, and then to the bladder, forming here a second, but shallower, pouch, the vesicouterine excavation (or uterovesical pouch). The vesicouterine excavation is close to the anterior fornix of the vagina." [Wikipedia:Vesico-uterine_pouch] +subset: human_subset +subset: mouse_subset synonym: "excavatio vesico-uterina" EXACT [FMA:14729] synonym: "excavatio vesicouterina" EXACT OMO:0003011 [FMA:TA] synonym: "excavatio vesicouterina" RELATED OMO:0003011 [Wikipedia:Vesico-uterine_pouch] @@ -312347,6 +325140,8 @@ id: UBERON:0011050 name: thoracic vertebra 8 def: "The eighth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T8_Vertebra] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "eighth dorsal vertebra" EXACT [FMA:9991] synonym: "eighth thoracic vertebra" EXACT [FMA:9991] synonym: "T8 vertebra" EXACT [FMA:9991] @@ -312365,6 +325160,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011060 name: perilymphatic channel def: "A channel containing perilymph passing through the temporal bone, connecting the scala tympani of the cochlea to the subarachnoid space." [MESH:A09.246.631.246.280, Wikipedia:Perilymphatic_duct] +subset: human_subset +subset: mouse_subset synonym: "cochlear aqueduct" RELATED [FMA:77822, MESH:A09.246.631.246.280] synonym: "ductus perilymphaticus" EXACT [AAO:0000136] synonym: "perilymphatic duct" RELATED [MESH:A09.246.631.246.280] @@ -312387,6 +325184,8 @@ property_value: external_definition "Duct that contains perilymph[ZFA:0005461, Z id: UBERON:0011078 name: endolymphatic space def: "Endolymph-filled space contained by the membranous labyrinth." [http://medical-dictionary.thefreedictionary.com/endolymphatic+space] +subset: human_subset +subset: mouse_subset xref: FMA:77823 xref: SCTID:279856000 is_a: UBERON:0002553 ! anatomical cavity @@ -312398,6 +325197,8 @@ property_value: has_relational_adjective "endolymphatic" xsd:string id: UBERON:0011079 name: angular bone def: "Dermal bone that is located posterior to the dentary and lateral to the articular and retroarticular bones of the lower jaw. The angular forms the outer dermal sheet of the posterior part of the lower jaw. The angular bears a portion of the mandibular sensory canal. The angular is a paired bone." [TAO:0001669, Wikipedia:Angular_bone] +subset: human_subset +subset: mouse_subset synonym: "angular" BROAD [AAO:0000010] synonym: "angular bones" RELATED OMO:0003004 [ZFA:0001645] synonym: "postoperculare" RELATED [AAO:0000010] @@ -312420,6 +325221,8 @@ id: UBERON:0011085 name: palatoquadrate arch def: "The dorsal portion of the first pharyngeal arch, comprising the upper jaw[ZFIN,VHOG]." [https://github.com/obophenotype/uberon/issues/153, VHOG:0000511] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "dorsal mandibular arch" RELATED [VHOG:0000511] synonym: "dorsal pharyngeal arch 1" RELATED [VHOG:0000511] synonym: "dorsal visceral arch 1" EXACT [ZFA:0001272] @@ -312443,6 +325246,8 @@ property_value: homology_notes "Subsequent vertebrate evolution has also involve [Term] id: UBERON:0011087 name: pharyngeal arch 7 +subset: human_subset +subset: mouse_subset synonym: "branchial arch 5" RELATED [ZFA:0001610] synonym: "gill arch 5" EXACT [ZFA:0001610] synonym: "visceral arch 7" EXACT [ZFA:0001610] @@ -312455,6 +325260,8 @@ property_value: pharyngeal_arch_number "7" xsd:nonNegativeInteger id: UBERON:0011088 name: ligament of knee joint def: "A ligament that is part of a knee joint." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "knee joint ligament" EXACT [FMA:44580] xref: FMA:44580 xref: SCTID:182440009 @@ -312467,6 +325274,8 @@ relationship: part_of UBERON:0001485 ! knee joint id: UBERON:0011090 name: skeleton of right pelvic girdle def: "A skeleton of pelvic girdle that is part of a right pelvic girdle region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:87593 is_a: UBERON:0007832 ! pelvic girdle skeleton intersection_of: UBERON:0007832 ! pelvic girdle skeleton @@ -312477,6 +325286,8 @@ relationship: part_of UBERON:0011092 ! right pelvic girdle region id: UBERON:0011091 name: skeleton of left pelvic girdle def: "A skeleton of pelvic girdle that is part of a left pelvic girdle region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:87594 is_a: UBERON:0007832 ! pelvic girdle skeleton intersection_of: UBERON:0007832 ! pelvic girdle skeleton @@ -312487,6 +325298,8 @@ relationship: part_of UBERON:0011093 ! left pelvic girdle region id: UBERON:0011092 name: right pelvic girdle region def: "A pelvic girdle region that is in the right side of a multicellular organism." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "right pelvic girdle" EXACT INCONSISTENT [FMA:16582] xref: FMA:16582 is_a: UBERON:0001271 ! pelvic girdle region @@ -312500,6 +325313,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0011093 name: left pelvic girdle region def: "A pelvic girdle region that is in the left side of a multicellular organism." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left pelvic girdle" EXACT INCONSISTENT [FMA:16583] xref: FMA:16583 is_a: UBERON:0001271 ! pelvic girdle region @@ -312513,6 +325328,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0011094 name: vertebra cartilage element def: "The cartilaginous form of a vertebral element, a skeletal element that forms around the notochord and is part of the vertebral column." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, http://orcid.org/0000-0002-6601-2165, VSAO:0000184] +subset: human_subset +subset: mouse_subset synonym: "vertebral cartilage condensation" EXACT [VHOG:0000584] xref: EMAPA:32669 xref: VHOG:0000584 @@ -312529,6 +325346,8 @@ property_value: external_ontology_notes "This class is a superclass of individua id: UBERON:0011095 name: vertebra pre-cartilage condensation def: "The pre-cartilaginous form of a vertebral element, a skeletal element that forms around the notochord and is part of the vertebral column." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, http://orcid.org/0000-0002-6601-2165, VSAO:0000184] +subset: human_subset +subset: mouse_subset synonym: "vertebral pre-cartilage condensation" EXACT [VHOG:0000582] xref: EMAPA:32671 xref: VHOG:0000582 @@ -312544,6 +325363,8 @@ id: UBERON:0011096 name: lacrimal nerve def: "The lacrimal nerve is the smallest of the three branches of the ophthalmic division of the trigeminal nerve." [Wikipedia:Lacrimal_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "nervus lacrimalis" EXACT OMO:0003011 [Wikipedia:Lacrimal_nerve] xref: FMA:52628 xref: NCIT:C32908 @@ -312562,6 +325383,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011104 name: epiphysis of fifth metacarpal bone def: "An epiphysis that is part of a metacarpal bone of digit 5." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "fifth metacarpal bone epiphysis" EXACT [FMA:86330] synonym: "metacarpal 5 epiphysis" EXACT [] xref: FMA:86330 @@ -312574,6 +325397,8 @@ relationship: part_of UBERON:0003649 ! metacarpal bone of digit 5 id: UBERON:0011106 name: cruciate ligament of atlas def: "A cruciate ligament in the neck forming part of the atlanto-axial joint. It consists of the transverse ligament of the atlas, along with additional fibers above and below." [Wikipedia:Cruciate_ligament_of_the_dens] +subset: human_subset +subset: mouse_subset synonym: "cruciate ligament of dens" EXACT [Wikipedia:Cruciate_ligament_of_the_dens] synonym: "cruciform ligament of atlas" EXACT [FMA:25018] synonym: "cruciform ligament of dens" EXACT [Wikipedia:Cruciate_ligament_of_the_dens] @@ -312591,6 +325416,8 @@ relationship: part_of UBERON:0000220 {inconsistent_with="Wikipedia", source="FMA id: UBERON:0011107 name: synovial joint of pelvic girdle def: "A synovial joint that is part of a pelvic girdle region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "joint of pelvic girdle" EXACT [] synonym: "pelvic girdle joint" EXACT [FMA:35173] xref: FMA:35173 @@ -312607,6 +325434,8 @@ relationship: part_of UBERON:0001271 ! pelvic girdle region id: UBERON:0011108 name: synovial joint of pectoral girdle def: "A synovial joint that is part of a pectoral girdle region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "joint of shoulder girdle" EXACT [] synonym: "pectoral girdle joint" EXACT [FMA:35243] xref: FMA:35243 @@ -312623,6 +325452,8 @@ property_value: external_ontology_notes "in FMA, these are part of the bony pect id: UBERON:0011110 name: humeroulnar joint def: "The humeroulnar joint, is part of the elbow-joint or the Olecron Joint, between the ulna and humerus bones is the simple hinge-joint, which allows for movements of flexion, extension and circumduction. The Humero-Ulnar Joint is the junction of trochlear notch of the ulna and the trochlea of the humerus. Owing to the obliquity of the trochlea of the humerus, this movement does not take place in the antero-posterior plane of the body of the humerus. When the forearm is extended and supinated, the axis of the arm and forearm are not in the same line; the arm forms an obtuse angle with the forearm. During flexion, however, the forearm and the hand tend to approach the middle line of the body, and thus enable the hand to be easily carried to the face. The accurate adaptation of the trochlea of the humerus, with its prominences and depressions, to the semilunar notch of the ulna, prevents any lateral movement. Flexion is produced by the action of the Biceps brachii and Brachialis, assisted by the Brachioradialis, with a tiny contribution from the muscles arising from the medial epicondyle of the humerus. Extension is produced by the Triceps brachii and AnconC&us, with a tiny contribution from the muscles arising from the lateral epicondyle of the humerus, such as the Extensor digitorum communis." [Wikipedia:Humeroulnar_joint] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "articulatio humeroulnaris" EXACT OMO:0003011 [FMA:TA] synonym: "humero-ulnar joint" EXACT [FMA:38854] @@ -312644,6 +325475,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/97/Gr id: UBERON:0011111 name: humeroradial joint def: "A hinge joint between the head of the radius and the capitulum of the humerus." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Humeroradial_joint] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "articulatio humeroradialis" EXACT OMO:0003011 [Wikipedia:Humeroradial_joint] synonym: "humero-radial joint" EXACT [] @@ -312663,6 +325496,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/97/Gr id: UBERON:0011112 name: tibiofibular joint def: "A joint that connects the tibia and the fibula." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Tibiofibular_joint] +subset: human_subset +subset: mouse_subset synonym: "fibulatibial joint" EXACT [] synonym: "fibulotibial joint" EXACT [] synonym: "tibiafibular joint" EXACT [] @@ -312684,6 +325519,8 @@ property_value: editor_note "we include location as part of the logical definiti id: UBERON:0011113 name: inferior tibiofibular joint def: "The inferior tibiofibular articulation (tibiofibular syndesmosis) is formed by the rough, convex surface of the medial side of the lower end of the fibula, and a rough concave surface on the lateral side of the tibia. Below, to the extent of about 4 mm. these surfaces are smooth, and covered with cartilage, which is continuous with that of the ankle-joint. The ligaments are: Anterior ligament of the lateral malleolus, Posterior ligament of the lateral malleolus, Inferior transverse ligament of the tibiofibular syndesmosis, Interosseous ligament." [Wikipedia:Inferior_tibiofibular_articulation] +subset: human_subset +subset: mouse_subset synonym: "distal tibiofibular joint" EXACT [FMA:10465] synonym: "inferior tibiofibular articulation" RELATED [Wikipedia:Inferior_tibiofibular_articulation] synonym: "syndesmosis tibiofibularis" EXACT OMO:0003011 [FMA:TA] @@ -312699,6 +325536,8 @@ relationship: connects UBERON:0004410 ! distal epiphysis of fibula id: UBERON:0011117 name: superior tibiofibular joint def: "The superior tibiofibular articulation is an arthrodial joint between the lateral condyle of the tibia and the head of the fibula. The contiguous surfaces of the bones present flat, oval facets covered with cartilage and connected together by an articular capsule and by anterior and posterior ligaments. When the term 'tibiofibular articulation' is used without a modifier, it refers to the superior, and not the inferior tibiofibular articulation." [Wikipedia:Superior_tibiofibular_joint] +subset: human_subset +subset: mouse_subset synonym: "articulatio tibiofibularis" RELATED OMO:0003011 [Wikipedia:Superior_tibiofibular_joint] synonym: "proximal tibiofibular joint" EXACT [FMA:35184] synonym: "proximal tibiofibular joint" RELATED [Wikipedia:Superior_tibiofibular_joint] @@ -312721,6 +325560,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a8/Gr id: UBERON:0011118 name: tarsometatarsal joint def: "The tarsometatarsal articulations are arthrodial joints in the pes." [Wikipedia:Tarsometatarsal_articulations] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "articulationes tarsometatarsales" RELATED OMO:0003011 [Wikipedia:Tarsometatarsal_articulations] synonym: "cuboideometatarsal" RELATED [Wikipedia:Tarsometatarsal_articulations] @@ -312746,6 +325587,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gr id: UBERON:0011119 name: carpometacarpal joint def: "The carpometacarpal joints (CMC) are joints in the wrist that articulates the distal row of carpal bones and the proximal bases of the metacarpal bones." [Wikipedia:Carpometacarpal_joint] +subset: human_subset +subset: mouse_subset synonym: "articulationes carpometacarpeæ" EXACT OMO:0003011 [Wikipedia:Carpometacarpal_joint] synonym: "carpometacarpal" BROAD [Wikipedia:Carpometacarpal_joint] synonym: "carpometacarpal articulation" RELATED [Wikipedia:Carpometacarpal_joint] @@ -312770,6 +325613,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7c/Gr id: UBERON:0011120 name: laryngeal joint def: "A skeletal joint that connects a laryngeal cartilage." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "joint of larynx" EXACT [FMA:55100] synonym: "laryngeal articulation" EXACT [FMA:55100] xref: FMA:55100 @@ -312783,6 +325628,8 @@ relationship: part_of UBERON:0010323 ! cranial skeletal system id: UBERON:0011121 name: cricothyroid joint def: "The cricoarytenoid articulation (or joint) is a joint connecting the cricoid cartilage and the thyroid cartilage." [Wikipedia:Cricothyroid_articulation] +subset: human_subset +subset: mouse_subset synonym: "crico-thyroid joint" RELATED [Wikipedia:Cricothyroid_articulation] synonym: "cricothyroid articulation" EXACT [FMA:55101] xref: FMA:55101 @@ -312803,6 +325650,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8a/La id: UBERON:0011122 name: cricoarytenoid joint def: "The cricoarytenoid articulation (or joint) is a joint connecting the cricoid cartilage and the arytenoid cartilage." [Wikipedia:Cricoarytenoid_articulation] +subset: human_subset +subset: mouse_subset synonym: "crico-arytenoid joint" EXACT [FMA:55102] synonym: "crico-arytenoid joint" RELATED [Wikipedia:Cricoarytenoid_articulation] synonym: "cricoarytenoid articulation" EXACT [FMA:55102] @@ -312824,6 +325673,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Gr id: UBERON:0011123 name: stifle joint def: "A complex joint in the hind limbs of quadruped mammals such as the sheep, horse or dog. It is the equivalent joint to the human knee. It is often the largest synovial joint in the body." [Wikipedia:Stifle_joint] +subset: mouse_subset synonym: "femoropatellar joint" RELATED [] xref: MESH:D013264 xref: NCIT:C98784 @@ -312841,6 +325691,8 @@ relationship: part_of UBERON:0000978 ! leg id: UBERON:0011124 name: xiphisternal joint def: "The xiphisternal joint (or xiphisternal synchondrosis) is a location near the bottom of the sternum, where the body of the sternum and the xiphoid process." [Wikipedia:Xiphisternal_joint] +subset: human_subset +subset: mouse_subset synonym: "synchondrosis xiphisternalis" EXACT [FMA:7503] synonym: "xiphisternal junction" RELATED [Wikipedia:Xiphisternal_joint] synonym: "xiphisternal synchdrondosis" RELATED [Wikipedia:Xiphisternal_joint] @@ -312859,6 +325711,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/23/Gr [Term] id: UBERON:0011130 name: temporomandibular joint primordium +subset: human_subset +subset: mouse_subset synonym: "temporo-mandibular joint primordium" EXACT [EMAPA:18714] xref: EMAPA:18714 is_a: UBERON:0001048 ! primordium @@ -312868,6 +325722,8 @@ relationship: part_of UBERON:0001694 {source="EMAPA"} ! petrous part of temporal id: UBERON:0011131 name: intermetacarpal joint def: "A skeletal joint that connects two adjacent metacarpals[FMA,modified]." [FMA:35288] +subset: human_subset +subset: mouse_subset synonym: "intermetacarpal" RELATED [Wikipedia:Intermetacarpal_articulations] synonym: "intermetacarpal articulation" RELATED [Wikipedia:Intermetacarpal_articulations] xref: FMA:35288 @@ -312884,6 +325740,8 @@ relationship: part_of UBERON:0004453 ! metacarpus region id: UBERON:0011132 name: intercarpal joint def: "A skeletal joint that connects two carpal bones." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "carpal joint" EXACT [FMA:35292] synonym: "intercarpal" RELATED [Wikipedia:Intercarpal_articulations] synonym: "intercarpal articulation" RELATED [Wikipedia:Intercarpal_articulations] @@ -312906,6 +325764,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/37/Gr id: UBERON:0011133 name: intermetatarsal joint def: "A joint that connects two adjacent metatarsals." [Wikipedia:Intermetatarsal_articulations] +subset: human_subset +subset: mouse_subset xref: FMA:35219 xref: SCTID:361868009 xref: Wikipedia:Intermetatarsal_articulations @@ -312922,6 +325782,8 @@ property_value: taxon_notes "In humans: The base of the first metatarsal is not id: UBERON:0011134 name: nonsynovial joint def: "Joint in which the articulating bones or cartilages are connected by ligaments or fibrocartilage without an intervening synovial cavity. Examples: sagittal suture, inferior tibiofibular syndesmosis, costochondral joint, pubic symphysis." [FMA:7491] +subset: human_subset +subset: mouse_subset synonym: "solid joint" EXACT [FMA:7491] xref: FMA:7491 is_a: UBERON:0000982 {source="FMA"} ! skeletal joint @@ -312930,6 +325792,8 @@ is_a: UBERON:0000982 {source="FMA"} ! skeletal joint id: UBERON:0011135 name: intervertebral cartilage def: "A cartilage element that lies between two successive vertebral centra." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset xref: AAO:0000795 is_a: UBERON:0007844 ! cartilage element intersection_of: UBERON:0007844 ! cartilage element @@ -312942,6 +325806,8 @@ property_value: external_definition "Block of cartilage, which usually ossifies, id: UBERON:0011136 name: ligament of vertebral column def: "Ligament that joins successive centra. Important in controlling the stiffness of the vertebral column when it flexes." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "intervertebral ligament" BROAD [] synonym: "vertebral centrum ligament" BROAD [] synonym: "vertebral column ligament" EXACT [FMA:31892] @@ -312958,6 +325824,8 @@ relationship: part_of UBERON:0001130 ! vertebral column id: UBERON:0011137 name: axial skeletal system def: "Subdivision of the skeletal system which consists of the axial skeleton plus associated joints." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: FMA:7483 is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system relationship: has_part UBERON:0000982 ! skeletal joint @@ -312968,6 +325836,8 @@ property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/docs/The-axial-sk id: UBERON:0011138 name: postcranial axial skeletal system def: "Subdivision of the skeletal system which consists of the postcranial axial skeleton plus associated joints." [https://github.com/obophenotype/uberon/issues/44, https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "axial skeletal system" BROAD [https://github.com/obophenotype/uberon/wiki/The-axial-skeleton] synonym: "post-cranial axial skeletal system" EXACT [] xref: FMA:302077 @@ -312981,6 +325851,8 @@ id: UBERON:0011139 name: synovial limb joint def: "Any synovial joint that is part of a (free) limb." [https://orcid.org/0000-0002-6601-2165] comment: Most limb joints are synovial, but a few such as the tibiofibular joints are syndesmoses. +subset: human_subset +subset: mouse_subset synonym: "synovial joint of free limb segment" EXACT [FMA:258776] xref: FMA:258776 is_a: UBERON:0002217 ! synovial joint @@ -312993,6 +325865,8 @@ relationship: part_of UBERON:0002101 ! limb id: UBERON:0011140 name: superficial part of masseter muscle subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "masseter, superficial" EXACT [FEED:FEED] synonym: "pars profunda musculus masseterica superficialis" EXACT OMO:0003011 [FMA:49000, FMA:TA] synonym: "pars superficialis (musculus masseter)" EXACT [FMA:49000] @@ -313015,6 +325889,8 @@ id: UBERON:0011141 name: appendicular ossicle def: "Ossicle that is part of the appendicular skeleton." [PSPUB:0000169, VSAO:0000131] comment: Examples of appendicular ossicles include the patella and meniscus of the knee joint. +subset: human_subset +subset: mouse_subset synonym: "ossicle of appendicular skeleton" EXACT [OBOL:automatic] xref: VSAO:0000131 xref: XAO:0004194 @@ -313028,6 +325904,8 @@ id: UBERON:0011142 name: axial ossicle def: "Ossicle that is part of the axial skeleton." [PSPUB:0000169, VSAO:0000133] comment: Examples of axial ossicles include the ossified tendons adjacent to the neural spines of the vertebral column. +subset: human_subset +subset: mouse_subset synonym: "ossicle of axial skeleton" EXACT [OBOL:automatic] synonym: "ossicle of postcranial-axial skeleton" EXACT [OBOL:automatic] synonym: "vertebral ossicle" RELATED [OBOL:automatic] @@ -313042,6 +325920,8 @@ id: UBERON:0011143 name: upper urinary tract def: "Subdivision of urinary system which consists of the kidney and the ureters." [FMA:45658] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:45658 xref: galen:UpperUrinaryTract @@ -313058,6 +325938,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0011144 name: adductor muscle of hip +subset: human_subset +subset: mouse_subset synonym: "adductor group (leg)" EXACT [MA:0002267] synonym: "muscle of adductor group" RELATED [] xref: BTO:0000030 @@ -313080,6 +325962,8 @@ id: UBERON:0011145 name: adductor muscle def: "A muscle capable of adduction. Adduction is a movement which brings a part of the anatomy closer to the middle sagittal plane of the body. It is opposed to abduction." [Wikipedia:Adduction, Wikipedia:Adductor_muscle] subset: functional_classification +subset: human_subset +subset: mouse_subset synonym: "adductor" RELATED [] xref: FMA:74998 xref: TAO:0002136 @@ -313114,6 +325998,8 @@ relationship: part_of UBERON:0007376 ! outer epithelium id: UBERON:0011148 name: submucosal gland def: "Gland of the lamina epithelialis mucosae which perforate the lamina muscularis, with their adenomeres located in the submucosal connective tissue." [BTO:0003751, Wikipedia:Submucosal_glands] +subset: human_subset +subset: mouse_subset xref: BTO:0003751 xref: EMAPA:37970 {source="MA:th"} xref: Wikipedia:Submucosal_glands @@ -313166,6 +326052,8 @@ property_value: homology_notes "Gill slits in the pharyngeal region of the intes id: UBERON:0011151 name: jaw depressor muscle def: "A muscle whose action is to depress the lower jaw." [DOI:10.1006/bijl.2000.0436, https://github.com/obophenotype/uberon/issues/232] +subset: human_subset +subset: mouse_subset synonym: "branchiomandibularis" NARROW SENSU [DOI:10.1006/bijl.2000.0436] synonym: "coracomandibularis" NARROW SENSU [DOI:10.1006/bijl.2000.0436] synonym: "depressor gnathalis" NARROW SENSU [DOI:10.1006/bijl.2000.0436] @@ -313187,6 +326075,8 @@ property_value: taxon_notes "In amphibians, 'Muscle that pulls the hyoid apparat [Term] id: UBERON:0011152 name: dorsal hyoid arch skeleton +subset: human_subset +subset: mouse_subset synonym: "dorsal hyoid arch" EXACT [ZFA:0001401] synonym: "dorsal pharyngeal arch 2 skeleton" EXACT [] synonym: "dorsal visceral arch 2" EXACT [ZFA:0001401] @@ -313201,6 +326091,8 @@ relationship: part_of UBERON:0005884 {source="AAO"} ! hyoid arch skeleton id: UBERON:0011153 name: ventral hyoid arch skeleton subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "ventral hyoid arch" EXACT [ZFA:0001402] synonym: "ventral pharyngeal arch 2 skeleton" EXACT [] synonym: "ventral visceral arch 2" EXACT [ZFA:0001402] @@ -313216,6 +326108,8 @@ relationship: part_of UBERON:0005884 {source="AAO"} ! hyoid arch skeleton id: UBERON:0011154 name: gular region def: "Surface structure that extends from the chin covering pharynx and larynx." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: TAO:0002286 is_a: UBERON:0003102 {source="TAO"} ! surface structure relationship: part_of UBERON:0007811 ! craniocervical region @@ -313225,6 +326119,8 @@ property_value: external_definition "Surface structure that is the region betwee id: UBERON:0011155 name: Sylvian cistern def: "The subarachnoid space associated with the lateral cerebral sulcus (Sylvian fissure); contains the M1 segment of the middle cerebral artery and the origin of lenticulostriate arteries, and proximal parts of the middle cerebral artery." [http://www.mondofacto.com/facts/dictionary?Sylvian+cistern] +subset: human_subset +subset: mouse_subset xref: NCIT:C33714 xref: UMLS:C1515104 {source="ncithesaurus:Sylvian_Cistern"} is_a: UBERON:0004050 ! subarachnoid cistern @@ -313234,6 +326130,8 @@ relationship: adjacent_to UBERON:0002721 ! lateral sulcus id: UBERON:0011156 name: facial skeleton def: "Subdivision of skull that consists of the facial bones." [http://www.bartleby.com/107/37.html, https://orcid.org/0000-0002-6601-2165, MP:0005274, Wikipedia:Facial_skeleton] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "facial bone" RELATED [MA:0000318] synonym: "facial skeleton" EXACT [FMA:53673] @@ -313256,6 +326154,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Il id: UBERON:0011157 name: cuneiform cartilage def: "The cuneiform cartilages of the larynx are two small, elongated pieces of yellow elastic cartilage, placed one on either side, in the aryepiglottic fold, where they give rise to small whitish elevations on the surface of the mucous membrane, just in front of the arytenoid cartilages." [Wikipedia:Cuneiform_cartilages] +subset: human_subset +subset: mouse_subset synonym: "cartilage of Morgagni" EXACT [FMA:55111] synonym: "cartilage of Wrisberg" EXACT [FMA:55111] synonym: "cartilagines cuneiformes" RELATED OMO:0003011 [Wikipedia:Cuneiform_cartilages] @@ -313278,6 +326178,8 @@ property_value: external_ontology_notes "compare with AAO def, 'Independent cart id: UBERON:0011158 name: primary subdivision of skull def: "The skull can be divided into two: the neurocranium and the facial skeleton." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "skull subdivision" EXACT [FMA:54964] synonym: "subdivision of skull" EXACT [FMA:54964] @@ -313288,6 +326190,8 @@ relationship: part_of UBERON:0003129 ! skull [Term] id: UBERON:0011159 name: primary subdivision of cranial skeletal system +subset: human_subset +subset: mouse_subset subset: non_informative is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system relationship: part_of UBERON:0010323 ! cranial skeletal system @@ -313296,6 +326200,8 @@ relationship: part_of UBERON:0010323 ! cranial skeletal system id: UBERON:0011160 name: nasal suture def: "A suture joining a nasal bone to another bone." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: SCTID:368992007 is_a: UBERON:0009199 ! facial suture intersection_of: UBERON:0009199 ! facial suture @@ -313306,6 +326212,8 @@ relationship: connects UBERON:0001681 ! nasal bone id: UBERON:0011161 name: spheno-occipital synchondrosis def: "The cartilaginous junction between the basisphenoid and basioccipital bones of the mammalian skull." [http://www.merriam-webster.com/medical/spheno-occipital%20synchondrosis] +subset: human_subset +subset: mouse_subset xref: FMA:54818 xref: SCTID:140895003 is_a: UBERON:0001725 ! cranial synchondrosis @@ -313320,6 +326228,8 @@ property_value: taxon_notes "in humans, usually closed by the age of 25" xsd:str id: UBERON:0011162 name: supraoccipital cartilage element def: "A cartilaginous condensation that has the potential to develop into a supraoccipital bone." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "non-squamous part of supraoccipital bone" RELATED [EMAPA:18341] synonym: "supra-occipital cartilage condensation" EXACT [] synonym: "supraoccipital cartilage condensation" EXACT [EMAPA:18341] @@ -313336,6 +326246,8 @@ relationship: part_of UBERON:0002241 ! chondrocranium id: UBERON:0011163 name: supraoccipital pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a supraoccipital bone." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "supra-occipital pre-cartilage condensation" EXACT [EHDAA2:0001963] xref: EHDAA2:0001963 xref: EHDAA:9534 @@ -313352,6 +326264,8 @@ relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium id: UBERON:0011164 name: neurocranium bone def: "A bone that is part of a neurocranium [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "chondrocranium bone" EXACT [MA:0001478] xref: EMAPA:35238 xref: MA:0001478 @@ -313366,6 +326280,8 @@ relationship: part_of UBERON:0001703 ! neurocranium id: UBERON:0011165 name: crico-esophageal tendon def: "Longitudinal fibers of the esophagus that attaches to the posterior aspect of the cricoid cartilage of the larynx." [http://www.medilexicon.com/medicaldictionary.php?t=90131] +subset: human_subset +subset: mouse_subset synonym: "crico-oesophageal tendon" EXACT [] synonym: "cricoesophageal tendon" EXACT [] synonym: "Gillette suspensory ligament" RELATED [http://www.medilexicon.com/] @@ -313382,6 +326298,8 @@ relationship: part_of RO:0002577 ! system [Term] id: UBERON:0011166 name: patellofemoral joint +subset: human_subset +subset: mouse_subset synonym: "femorapatellar joint" EXACT [] synonym: "femoropatellar joint" EXACT [] synonym: "patello femoral joint" EXACT [galen:PatelloFemoralJoint] @@ -313400,6 +326318,8 @@ id: UBERON:0011167 name: septomaxilla bone def: "Paired, intramembranous bones located within the nasal capsules and embedded in the nasal cartilages; it is pierced by the ductus nasolacrimalis." [AAO:0000556, https://github.com/obophenotype/uberon/issues/97] comment: A small dermal bone of the facial series that is often absent; when present it is usually sunken beneath the surface bones and aids in forming the nasal cavity +subset: human_subset +subset: mouse_subset synonym: "internasale" RELATED [AAO:0000556] synonym: "intranasal" RELATED [AAO:0000556] synonym: "lacrimale" RELATED [AAO:0000556] @@ -313423,6 +326343,8 @@ property_value: dc:contributor https://github.com/mellybelly id: UBERON:0011168 name: postfrontal bone def: "A bone behind and above the orbit of which it commonly forms part of the border that is present in many vertebrates and corresponds to the postorbital process of the frontal bone of various birds and mammals." [http://www.merriam-webster.com/dictionary/postfrontal] +subset: human_subset +subset: mouse_subset synonym: "postfrontal" BROAD [] is_a: UBERON:0003462 ! facial bone is_a: UBERON:0008907 {source="ISBN:0073040584"} ! dermal bone @@ -313435,6 +326357,8 @@ relationship: present_in_taxon NCBITaxon:8570 {source="Wikipedia"} ! Serpentes id: UBERON:0011169 name: postorbital bone def: "The postorbital is one of the bones in vertebrate skulls which forms a portion of the dermal skull roof and, sometimes, a ring about the orbit. Generally, it is located behind the postfrontal and posteriorly to the orbital fenestra. In some vertebrates, the postorbital is fused with the postfrontal to create a postorbitofrontal." [Wikipedia:Postorbital_bone] +subset: human_subset +subset: mouse_subset synonym: "postorbital" BROAD [] xref: Wikipedia:Postorbital_bone is_a: UBERON:0003462 ! facial bone @@ -313465,6 +326389,8 @@ property_value: external_definition "Joint that articulates quadrate and anguloa id: UBERON:0011171 name: joint connecting upper and lower jaws def: "Synovial joint that articulates bones of upper and lower jaw." [http://evolution.berkeley.edu/evolibrary/article/evograms_05, https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "craniomandibular joint" NARROW [] synonym: "jaw joint" BROAD [] is_a: UBERON:0002217 {source="abduced"} ! synovial joint @@ -313479,6 +326405,8 @@ property_value: taxon_notes "Some synapsids retained two pairs of jaw joints - q id: UBERON:0011172 name: retrorubral area of midbrain reticular nucleus def: "The term retrorubral area of the midbrain reticular nucleus refers to a region of the rat brain caudal and dorsal to the ventral tegmental area. It is one of three parts of the midbrain reticular nucleus; the other two are the magnocellular part of the midbrain reticular nucleus and the parvicellular part of the midbrain reticular nucleus (Swanson-2004). BrainInfo distinguishes between the Retrorubral area of the midbrain reticular formation and the retrorubral nucleus." [NLXANAT:20090301] +subset: human_subset +subset: mouse_subset synonym: "A8" BROAD [NLXANAT:20090301] synonym: "area 11 of Brodmann (guenon)" RELATED [NeuroNames:1036] synonym: "area orbitalis interna" RELATED OMO:0003011 [NeuroNames:1036] @@ -313503,6 +326431,8 @@ relationship: part_of UBERON:0007415 {source="Obol"} ! nucleus of midbrain retic id: UBERON:0011173 name: anterior division of bed nuclei of stria terminalis def: "One of two divisions of the nuclei of stria terminalis based on topology, connectivity and multiple stains in the rat ( Swanson-2004 ) and the mouse ( Dong-2004 ). The other division consists of the posterior nuclei of stria terminalis. The anterior division includes the anterolateral area of stria terminalis, anteromedial area of stria terminalis, oval nucleus of stria terminalis, juxtacapsular nucleus of stria terminalis, rhomboid nucleus of stria terminalis, dorsomedial nucleus of stria terminalis, fusiform nucleus of stria terminalis, ventral nucleus of stria terminalis, and the magnocellular nucleus of stria terminalis." [neuronames:2753] +subset: human_subset +subset: mouse_subset synonym: "anterior division" BROAD [MA:0000926] synonym: "anterior nuclei of stria terminalis" EXACT [http://braininfo.rprc.washington.edu] synonym: "anterior part of the bed nucleus of the stria terminalis" RELATED [BAMS:BSTa] @@ -313525,6 +326455,8 @@ relationship: part_of UBERON:0001880 {source="MA"} ! bed nucleus of stria termin id: UBERON:0011175 name: fusiform nucleus of stria terminalis def: "A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of nine components of the anterior nuclei of stria terminalis in the Functional CNS Model -Rat ( Swanson-2004 )." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3218] +subset: human_subset +subset: mouse_subset synonym: "bed nuclei of the stria terminalis anterior division fusiform nucleus" RELATED [BAMS:BSTfu] synonym: "bed nuclei of the stria terminalis fusiform nucleus" RELATED [BAMS:BSTfu] synonym: "bed nuclei of the stria terminalis, anterior division, fusiform nucleus" EXACT [ABA:BSTfu] @@ -313544,6 +326476,8 @@ relationship: part_of UBERON:0011173 {source="MA"} ! anterior division of bed nu id: UBERON:0011176 name: oval nucleus of stria terminalis def: "A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of nine components of the anterior nuclei of stria terminalis in the Functional CNS Model - Rat (Swanson-2004)." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3214] +subset: human_subset +subset: mouse_subset synonym: "bed nuclei of the stria terminalis, anterior division, oval nucleus" EXACT [ABA:BSTov] synonym: "oval nucleus" EXACT [MA:0000929] xref: EMAPA:37667 {source="MA:th"} @@ -313558,6 +326492,8 @@ relationship: part_of UBERON:0011173 {source="MA"} ! anterior division of bed nu id: UBERON:0011177 name: posterior division of bed nuclei of stria terminalis def: "One of two divisions of the nuclei of stria terminalis based on topology, connectivity and multiple stains in the rat ( Swanson-2004 ) and the mouse ( Dong-2004 ). The other division consists of the anterior nuclei of stria terminalis. The posterior division includes the principal nucleus of stria terminalis, interfascicular nucleus of stria terminalis, transverse nucleus of stria terminalis, premedullary nucleus of stria terminalis, dorsal nucleus of stria terminalis, the strial extension of stria terminalis, and the cell sparse zone of stria terminalis." [neuronames:2754] +subset: human_subset +subset: mouse_subset synonym: "bed nuclei of the stria terminalis posterior division" RELATED [BAMS:BSTp] synonym: "bed nuclei of the stria terminalis, posterior division" EXACT [ABA:BSTp] synonym: "bed nucleus of stria terminalis posterior part" RELATED [BAMS:BSTp] @@ -313577,6 +326513,8 @@ relationship: part_of UBERON:0001880 {source="MA"} ! bed nucleus of stria termin id: UBERON:0011178 name: principal nucleus of stria terminalis def: "A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of seven components of the posterior nuclei of stria terminalis in the Functional CNS Model - Rat ( Swanson-2004 )." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3221] +subset: human_subset +subset: mouse_subset synonym: "bed nuclei of the stria terminalis posterior division principal nucleus" RELATED [BAMS:BSTpr] synonym: "bed nuclei of the stria terminalis principal nucleus" RELATED [BAMS:BSTpr] synonym: "bed nuclei of the stria terminalis, posterior division, principal nucleus" EXACT [ABA:BSTpr] @@ -313594,6 +326532,8 @@ relationship: part_of UBERON:0011177 {source="MA"} ! posterior division of bed n id: UBERON:0011179 name: transverse nucleus of stria terminalis def: "A component of the nuclei of stria terminalis defined on the basis of topology, connectivity and multiple stains in the rat. It is one of seven components of the posterior nuclei of stria terminalis in the Functional CNS Model - Rat (Swanson-2004)." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3223] +subset: human_subset +subset: mouse_subset synonym: "bed nuclei of the stria terminalis posterior division transverse nucleus" RELATED [BAMS:BSTtr] synonym: "bed nuclei of the stria terminalis transverse nucleus" RELATED [BAMS:BSTtr] synonym: "bed nuclei of the stria terminalis, posterior division, transverse nucleus" EXACT [ABA:BSTtr] @@ -313611,6 +326551,8 @@ relationship: part_of UBERON:0011177 {source="MA"} ! posterior division of bed n id: UBERON:0011183 name: corpus spongiosum of penis def: "Corpus spongiosum (also known as corpus cavernosum urethrae in older texts) is the mass of spongy tissue surrounding the male urethra within the penis." [Wikipedia:Corpus_spongiosum_penis] +subset: human_subset +subset: mouse_subset synonym: "corpus cavernosum urethra" RELATED DEPRECATED [Wikipedia:Corpus_spongiosum_penis] synonym: "corpus cavernosum urethrae" RELATED DEPRECATED [Wikipedia:Corpus_spongiosum_penis] synonym: "corpus spongiosum" RELATED [Wikipedia:Corpus_spongiosum_penis] @@ -313635,6 +326577,8 @@ id: UBERON:0011184 name: epithelium of crypt of Lieberkuhn def: "An epithelium that is part of a crypt of Lieberkuhn." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "crypt epithelium" BROAD [] synonym: "intestinal crypt epithelium" EXACT [] xref: NCIT:C83191 @@ -313650,6 +326594,8 @@ property_value: external_ontology_notes "FMA has classes for subdivisions of thi id: UBERON:0011185 name: gastrointestinal sphincter def: "A sphincter muscle that is part of the gastrointestinal system." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: NCIT:C32669 xref: UMLS:C1517464 {source="ncithesaurus:Gastrointestinal_Sphincter"} is_a: UBERON:0004590 ! sphincter muscle @@ -313662,6 +326608,8 @@ relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal syste id: UBERON:0011186 name: Krause's gland def: "Small, mucous accessory lacrimal glands that are found underneath the eyelid where the upper and lower conjuctivae meet. Their ducts unite into a rather long sinus which open into the fornix conjunctiva. There are approximately forty Krause glands in the region of the upper eyelid, and around 6 to 8 in the region of the lower lid. The function of these glands are to produce tears which are secreted onto the surface of the conjuctiva." [Wikipedia:Krause's_glands] +subset: human_subset +subset: mouse_subset synonym: "accessory lacrimal gland" BROAD [FMA:59056] synonym: "conjunctival gland" BROAD [FMA:59056] synonym: "Krause gland" EXACT [FMA:59056] @@ -313678,6 +326626,8 @@ relationship: part_of UBERON:0001351 {source="ncithesaurus"} ! lacrimal sac id: UBERON:0011187 name: ventral tubercle of humerus def: "The greater tubercle of the humerus is situated lateral to the head of the humerus and posteriolateral to the lesser tubercle. Its upper surface is rounded and marked by three flat impressions. the highest of these gives ('superior facet') insertion to the Supraspinatus the middle ('middle facet') to the Infraspinatus. the lowest one ('inferior facet'), and the body of the bone for about 2.5 cm. below it, to the Teres minor. The lateral surface of the greater tubercle is convex, rough, and continuous with the lateral surface of the body. Between the greater tubercle and the lesser tubercle is the intertubercular sulcus (bicipital groove)." [Wikipedia:Greater_tubercle] +subset: human_subset +subset: mouse_subset synonym: "greater tubercle" EXACT [FMA:23390] synonym: "greater tubercle of humerus" EXACT [FMA:23390] synonym: "greater tubercle of the humerus" RELATED [Wikipedia:Greater_tubercle] @@ -313701,6 +326651,8 @@ id: UBERON:0011188 name: lesser tubercle of humerus def: "The lesser tubercle of the humerus, although smaller, is more prominent than the greater tubercle: it is situated in front, and is directed medially and anteriorly. Above and in front it presents an impression for the insertion of the tendon of the Subscapularis." [Wikipedia:Lesser_tubercle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lesser tubercle" EXACT [FMA:23393] synonym: "lesser tubercle of humerus" RELATED [Wikipedia:Lesser_tubercle] synonym: "lesser tubercle of the humerus" RELATED [Wikipedia:Lesser_tubercle] @@ -313723,6 +326675,8 @@ id: UBERON:0011189 name: lamina propria of large intestine def: "A lamina propria that is part of a large intestine." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lamina propria of mucosa of large intestine" EXACT [FMA:15654] synonym: "large intestinal lamina propria" EXACT [] synonym: "large intestine lamina propria" EXACT [FMA:15654] @@ -313741,6 +326695,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011190 name: lunule of nail def: "A crescent-shaped whitish area of the bed of a fingernail or toenail. The lunula is the visible part of the nail matrix (i.e. the root of the nail)." [Wikipedia:unula_(anatomy)] +subset: human_subset +subset: mouse_subset synonym: "lunula" EXACT [] synonym: "lunula unguis" EXACT OMO:0003011 [FMA:77858, FMA:TA] synonym: "nail lunule" EXACT [FMA:77858] @@ -313757,6 +326713,8 @@ relationship: part_of UBERON:0001705 ! nail id: UBERON:0011191 name: ophthalmic vein def: "Ophthalmic veins are veins which drain the eye. More specifically, they can refer to: Superior ophthalmic vein Inferior ophthalmic vein." [Wikipedia:Ophthalmic_veins] +subset: human_subset +subset: mouse_subset synonym: "opthalmic vein" EXACT [EHDAA2:0004113] synonym: "vena ophthalmica" RELATED [Wikipedia:Ophthalmic_veins] xref: EHDAA2:0004113 @@ -313773,6 +326731,8 @@ id: UBERON:0011192 name: superior ophthalmic vein def: "The superior ophthalmic vein begins at the inner angle of the orbit in a vein named the nasofrontal which communicates anteriorly with the angular vein; it pursues the same course as the ophthalmic artery, and receives tributaries corresponding to the branches of that vessel. Forming a short single trunk, it passes between the two heads of the Rectus lateralis and through the medial part of the superior orbital fissure, and ends in the cavernous sinus. The ethmoidal veins drain into the superior ophthalmic vein. Vorticose veins also drain into the superior ophthalmic vein." [Wikipedia:Superior_ophthalmic_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "anterior ethmoidal vein" RELATED [Wikipedia:Superior_ophthalmic_vein] synonym: "posterior ethmoidal vein" RELATED [Wikipedia:Superior_ophthalmic_vein] synonym: "superior ophthalmic" RELATED [Wikipedia:Superior_ophthalmic_vein] @@ -313791,6 +326751,8 @@ id: UBERON:0011193 name: inferior ophthalmic vein def: "The inferior ophthalmic vein begins in a venous net-work at the forepart of the floor and medial wall of the orbit; it receives some vorticose veins and other veins from the Rectus inferior, Obliquus inferior, lacrimal sac and eyelids, runs backward in the lower part of the orbit and divides into two branches. One of these passes through the inferior orbital fissure and joins the pterygoid venous plexus, while the other enters the cranium through the superior orbital fissure and ends in the cavernous sinus, either by a separate opening, or more frequently in common with the superior ophthalmic vein." [Wikipedia:Inferior_ophthalmic_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "inferior ophthalmic" RELATED [Wikipedia:Inferior_ophthalmic_vein] synonym: "inferior opthalmic vein" RELATED [] xref: FMA:51247 @@ -313807,6 +326769,8 @@ id: UBERON:0011194 name: ophthalmic plexus def: "An autonomic plexus, entering the orbit in company with the ophthalmic artery, derived from the internal carotid plexus." [http://www.encyclo.co.uk/define/ophthalmic%20plexus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ophthalmic nerve plexus" EXACT [] synonym: "ophthalmic plexus" EXACT [MA:0002185] synonym: "opthalmic plexus" EXACT [] @@ -313823,6 +326787,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011195 name: inferior parathyroid epithelium def: "An epithelium that is part of a inferior parathyroid gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "parathyroid III epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] xref: EHDAA2:0000824 xref: EHDAA:3868 @@ -313836,6 +326802,7 @@ relationship: part_of UBERON:0006755 ! inferior parathyroid gland id: UBERON:0011196 name: superior parathyroid epithelium def: "An epithelium that is part of a superior parathyroid gland." [OBOL:automatic] +subset: human_subset xref: EHDAA2:0001957 xref: EHDAA:3874 is_a: UBERON:0011197 ! parathyroid epithelium @@ -313848,6 +326815,8 @@ relationship: part_of UBERON:0006749 ! superior parathyroid gland id: UBERON:0011197 name: parathyroid epithelium def: "An epithelium that is part of a parathyroid gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: CALOHA:TS-2141 xref: NCIT:C48258 xref: UMLS:C1709466 {source="ncithesaurus:Parathyroid_Gland_Epithelial_Tissue"} @@ -313864,6 +326833,8 @@ relationship: part_of UBERON:0001132 ! parathyroid gland id: UBERON:0011198 name: muscle layer of large intestine def: "A muscle layer that is part of a large intestine." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscular coat of large intestine" EXACT [FMA:14971] synonym: "muscular layer of large intestine" EXACT [FMA:14971] synonym: "muscularis externa of large intestine" EXACT [FMA:14971] @@ -313881,6 +326852,8 @@ relationship: part_of UBERON:0001169 {source="FMA"} ! wall of large intestine id: UBERON:0011199 name: prostatic utricle def: "A small indentation located in the prostatic urethra, at the apex of the urethral crest, on the seminal colliculus (verumontanum), laterally flanked by openings of the ejaculatory ducts." [Wikipedia:Prostatic_utricle] +subset: human_subset +subset: mouse_subset synonym: "sinus pocularis" EXACT [FMA:19702] synonym: "uterus masculinus" EXACT [FMA:19702] synonym: "uterus masculinus" RELATED OMO:0003011 [Wikipedia:Prostatic_utricle] @@ -313906,6 +326879,8 @@ property_value: editor_note "add df relations. Check mesopnephric duct" xsd:stri id: UBERON:0011200 name: sacrococcygeal symphysis def: "The sacrococcygeal symphysis (sacrococcygeal articulation, articulation of the sacrum and coccyx) is an amphiarthrodial joint, formed between the oval surface at the apex of the sacrum, and the base of the coccyx. It is a slightly moveable joint which is frequently, partially or completely, obliterated in old age, homologous with the joints between the bodies of the vertebrae." [Wikipedia:Sacrococcygeal_symphysis] +subset: human_subset +subset: mouse_subset synonym: "sacrococcygeal joint" EXACT [FMA:16210] synonym: "sacrococcygeal joint" RELATED [Wikipedia:Sacrococcygeal_symphysis] xref: FMA:16210 @@ -313924,6 +326899,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7f/Gr id: UBERON:0011201 name: muscle layer of small intestine def: "A muscle layer that is part of a small intestine." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscular coat of small intestine" EXACT [FMA:14932] synonym: "muscular layer of small intestine" EXACT [FMA:14932] synonym: "muscularis externa of small intestine" EXACT [FMA:14932] @@ -313944,6 +326921,8 @@ relationship: part_of UBERON:0002108 ! small intestine id: UBERON:0011202 name: urachus epithelium def: "An epithelium that is part of a urachus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004725 xref: NCIT:C54210 xref: UMLS:C1711256 {source="ncithesaurus:Urachal_Epithelium"} @@ -313958,6 +326937,8 @@ relationship: part_of UBERON:0002068 ! urachus id: UBERON:0011203 name: urachus mesenchyme def: "Mesenchyme that is part of a developing urachus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004726 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue @@ -313969,6 +326950,8 @@ relationship: part_of UBERON:0002068 ! urachus id: UBERON:0011204 name: rectovesical pouch def: "Between the rectum and the bladder the peritoneal cavity forms, in the male, a pouch, the rectovesical excavation (or rectovesical pouch), the bottom of which is slightly below the level of the upper ends of the vesiculae seminalesbi. e. , about 7.5 cm. from the orifice of the anus. its lowest part membranous partition called Rectoprostatic fascia. The corresponding structure in women is the rectouterine pouch." [Wikipedia:Recto-vesical_pouch] +subset: human_subset +subset: mouse_subset synonym: "excavatio rectovesicalis" EXACT OMO:0003011 [FMA:TA] synonym: "excavatio rectovesicalis" RELATED [Wikipedia:Recto-vesical_pouch] synonym: "recto-vesical pouch" EXACT [FMA:14727] @@ -313993,8 +326976,8 @@ def: "The carpometacarpus is the fusion of the carpal and metacarpal bone, essen synonym: "carpometacarpus bone" EXACT [] xref: Wikipedia:Carpometacarpus is_a: UBERON:0005897 ! manus bone -relationship: derived_from_ancestral_fusion_of UBERON:0001435 ! carpal bone -relationship: derived_from_ancestral_fusion_of UBERON:0002374 ! metacarpal bone +relationship: has_fused_element UBERON:0001435 ! carpal bone +relationship: has_fused_element UBERON:0002374 ! metacarpal bone relationship: in_taxon NCBITaxon:8492 ! Archosauria relationship: part_of UBERON:0001442 ! skeleton of manus @@ -314002,6 +326985,8 @@ relationship: part_of UBERON:0001442 ! skeleton of manus id: UBERON:0011206 name: hinge joint def: "A joint that allows motion around an axis." [BTO:0004707, Wikipedia:Hinge_joint] +subset: human_subset +subset: mouse_subset synonym: "ginglymus" RELATED [BTO:0004707] xref: BTO:0004707 xref: FMA:75296 @@ -314015,6 +327000,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/4/4b/G id: UBERON:0011207 name: iliocostalis lumborum def: "The iliocostalis lumborum (iliocostalis muscle; sacrolumbalis muscle) is inserted, by six or seven flattened tendons, into the inferior borders of the angles of the lower six or seven ribs." [Wikipedia:Iliocostalis#Iliocostalis_lumborum] +subset: human_subset +subset: mouse_subset synonym: "sacrolumbalis" RELATED [Wikipedia:Iliocostalis] synonym: "sacrolumbalis muscle" RELATED [Wikipedia:Iliocostalis] xref: FMA:22702 @@ -314025,6 +327012,8 @@ is_a: UBERON:0002251 {source="FMA"} ! iliocostalis muscle [Term] id: UBERON:0011208 name: medial migration pathway NC-derived mesenchyme +subset: human_subset +subset: mouse_subset synonym: "medial migration pathway" RELATED [] synonym: "medial migration pathway mesenchyme" EXACT [ZFA:0000786] xref: EHDAA2:0001075 @@ -314038,6 +327027,8 @@ disjoint_from: UBERON:0011209 {source="lexical"} ! lateral migration pathway NC- [Term] id: UBERON:0011209 name: lateral migration pathway NC-derived mesenchyme +subset: human_subset +subset: mouse_subset synonym: "lateral migration pathway" RELATED [] synonym: "lateral migration pathway mesenchyme" EXACT [ZFA:0000992] xref: EHDAA2:0000915 @@ -314050,6 +327041,8 @@ is_a: UBERON:0011210 ! migration pathway NC-derived mesenchyme [Term] id: UBERON:0011210 name: migration pathway NC-derived mesenchyme +subset: human_subset +subset: mouse_subset synonym: "migration pathway mesenchyme" EXACT [] synonym: "NC migration pathway" RELATED [] is_a: UBERON:0007214 ! mesenchyme derived from trunk neural crest @@ -314061,6 +327054,8 @@ relationship: part_of UBERON:0007214 {source="EHDAA2-abduced"} ! mesenchyme deri id: UBERON:0011213 name: root of vagus nerve def: "A root of cranial nerve that is part of a vagus nerve." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "rootlet of vagus nerve" EXACT [FMA:6213] synonym: "rX" BROAD [ZFA:0007011] synonym: "vagal root" EXACT [ZFA:0007011] @@ -314083,6 +327078,8 @@ property_value: external_ontology_notes "FMA distinguishes between roots and roo id: UBERON:0011214 name: nucleus of midbrain tectum def: "A neural nucleus that is part of a midbrain tectum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "nucleus of tectum" EXACT [FMA:258766] synonym: "tectal nucleus" BROAD [] xref: FMA:258766 @@ -314095,6 +327092,8 @@ relationship: part_of UBERON:0002314 ! midbrain tectum id: UBERON:0011215 name: central nervous system cell part cluster def: "A multi cell part structure that is part of a central nervous system." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "cell part cluster of neuraxis" EXACT [FMA:83143] synonym: "neuraxis layer" EXACT [FMA:83143] @@ -314111,6 +327110,8 @@ name: organ system subdivision def: "A subdivision of an anatomical system." [http://orcid.org/0000-0002-6601-2165] subset: common_anatomy subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: upper_level xref: FBbt:00007330 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67509 @@ -314126,6 +327127,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0011217 name: serratus dorsalis muscle +subset: human_subset +subset: mouse_subset synonym: "serratus dorsalis" EXACT [] synonym: "serratus posterior" EXACT [FMA:13400] synonym: "serratus posterior muscle" EXACT [FMA:13400] @@ -314142,6 +327145,8 @@ name: spinalis cervicis muscle def: "Origin: spinous processes of seventh cervical and sometimes two upper thoracic vertebrae; insertion: spinous processes of axis and sometimes of second to fourth cervical vertebrae; innervation: branches of cervical; action: extends vertebral column." [BTO:0002623] comment: The Spinalis cervicis (Spinalis colli) is an inconstant muscle, which arises from the lower part of the ligamentum nuchæ, the spinous process of the seventh cervical, and sometimes from the spinous processes of the first and second thoracic vertebrae, and is inserted into the spinosus process of the axis, and occasionally into the spinous processes of the two vertebrae below it. [Wikipedia:Spinalis#Spinalis_cervivis] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "musculus spinalis cervicis" RELATED [BTO:0002623] synonym: "spinal muscle of neck" EXACT [BTO:0002623] xref: BTO:0002623 @@ -314155,6 +327160,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011219 name: longissimus lumborum muscle def: "Lumbar muscle that extends and rotates the vertebral column." [BTO:0001925] +subset: human_subset +subset: mouse_subset synonym: "longissimus lumborum" EXACT [MA:0002338] synonym: "musculus longissimus lumborum" RELATED [BTO:0001925] xref: BTO:0001925 @@ -314168,6 +327175,8 @@ is_a: UBERON:0000392 ! longissimus muscle id: UBERON:0011220 name: mastoid process of temporal bone def: "The mastoid process is a conical prominence projecting from the undersurface of the mastoid portion of the temporal bone. It is located just behind the external acoustic meatus, and lateral to the styloid process. Its size and form vary somewhat; it is larger in the male than in the female. This process serves for the attachment of the posterior belly of the digastric, sternocleidomastoid, splenius capitis, and longissimus capitis muscles. The word is derived from the Greek 'masto-', alluding to its resemblance to the breast." [Wikipedia:Mastoid_process] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "mastoid" RELATED [Wikipedia:Mastoid_process] synonym: "mastoid process" EXACT [FMA:52872] @@ -314185,6 +327194,8 @@ relationship: part_of UBERON:0001678 {source="ncithesaurus"} ! temporal bone id: UBERON:0011221 name: ora serrata of retina def: "The ora serrata is the serrated junction between the retina and the ciliary body. This junction marks the transition from the simple non-photosensitive area of the retina to the complex, multi-layered photosensitive region. In animals in which the region does not have a serrated appearance, it is called the ora ciliaris retinae." [Wikipedia:Ora_serrata] +subset: human_subset +subset: mouse_subset synonym: "ora ciliaris retina" RELATED [Wikipedia:Ora_serrata] synonym: "ora ciliaris retinae" RELATED [Wikipedia:Ora_serrata] synonym: "ora serrata" EXACT [FMA:58600] @@ -314201,6 +327212,8 @@ relationship: part_of UBERON:0001766 ! anterior chamber of eyeball [Term] id: UBERON:0011222 name: intra-ocular muscle +subset: human_subset +subset: mouse_subset synonym: "intrinsic muscle of eyeball" EXACT [] synonym: "intrinsic ocular muscle" EXACT [EMAPA:18808] xref: AAO:0010038 @@ -314218,6 +327231,8 @@ id: UBERON:0011233 name: synovial membrane of synovial tendon sheath def: "Synovial sac which surrounds parts of one or more tendons. Examples: synovial tendon sheath of manual digit 2, radial bursa." [FMA:45087, Wikipedia:Synovial_sheath] comment: Alternate def: A synovial sheath is a layer of a tendon sheath containing tendons in the hand and foot. They lie internal to the fibrous tendon sheaths. An example is the common synovial sheath for the flexor tendons. [Wikipedia:Synovial_sheath] +subset: human_subset +subset: mouse_subset synonym: "synovium" BROAD [BTO:0001823] xref: BTO:0001823 xref: FMA:40878 @@ -314231,6 +327246,8 @@ relationship: part_of UBERON:0000304 ! tendon sheath [Term] id: UBERON:0011234 name: fibrous membrane of synovial tendon sheath +subset: human_subset +subset: mouse_subset xref: FMA:40877 is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer @@ -314244,6 +327261,8 @@ relationship: part_of UBERON:0000304 ! tendon sheath id: UBERON:0011236 name: deep fascia def: "Deep fascia (or 'investing fascia') is a layer of fascia which can surround individual muscles, and divide groups of muscles into compartments. This is the dense fibrous connective tissue that interpenetrates and surrounds the muscles, bones, nerves and blood vessels of the body. It provides connection and communication in the form of aponeuroses, ligaments, tendons, retinacula, joint capsules, and septa. The deep fasciae envelop all bone; cartilage, and blood vessels and become specialized in muscles and nerves. The high density of collagen fibers is what gives the deep fascia its strength and integrity. The amount of elastin fiber determines how much extensibility and resilience it will have." [Wikipedia:Deep_fascia] +subset: human_subset +subset: mouse_subset synonym: "deep fasciae" RELATED OMO:0003004 [Wikipedia:Deep_fascia] synonym: "deep investing fascia" NARROW [Wikipedia:Deep_fascia] synonym: "fascia of muscles" RELATED [Wikipedia:Deep_fascia] @@ -314260,6 +327279,8 @@ id: UBERON:0011237 name: visceral fascia def: "Fascia that suspends a visceral organ." [http://orcid.org/0000-0002-6601-2165] comment: Visceral fascia suspends the organs within their cavities and wraps them in layers of connective tissue membranes. Each of the organs is covered in a double layer of fascia; these layers are separated by a thin serous membrane. The outermost wall of the organ is known as the parietal layer The skin of the organ is known as the visceral layer. The organs have specialized names for their visceral fasciae. In the brain, they are known as meninges; in the heart they are known as pericardia; in the lungs, they are known as pleura; and in the abdomen, they are known as peritonea. [Wikipedia:Visceral_fascia] +subset: human_subset +subset: mouse_subset synonym: "parietal fascia" RELATED [Wikipedia:Visceral_fascia] xref: FMA:76754 xref: Wikipedia:Visceral_fascia @@ -314270,6 +327291,8 @@ property_value: external_ontology_notes "FMA considers parietal fascia a differe id: UBERON:0011238 name: mesethmoid bone def: "An ossified mesethmoid element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "ethmoid" RELATED [TAO:0000323] xref: TAO:0000323 xref: ZFA:0000323 @@ -314287,6 +327310,8 @@ property_value: external_definition "Endochondral bone that extends forward from id: UBERON:0011241 name: ethmoid region def: "The most anterior region of the braincase. Provides structural support for peripheral olfactory organ." [http://palaeos.com/vertebrates/bones/braincase/ethmoid.html, UBERONREF:0000007] +subset: human_subset +subset: mouse_subset xref: AAO:0000986 is_a: UBERON:0034921 ! multi organ part structure relationship: has_developmental_contribution_from UBERON:0005945 ! neurocranial trabecula @@ -314298,6 +327323,8 @@ id: UBERON:0011242 name: ethmoid cartilage def: "Region between capsules formed by anterior tips of neurocranial trabeculae." [ISBN:0073040584] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "ethmoid cartilages" EXACT OMO:0003004 [TAO:0001405] synonym: "ethmoid plate" RELATED [TAO:0001405] xref: AAO:0010134 @@ -314317,6 +327344,8 @@ property_value: external_ontology_notes "We assume the AAO structure is cartilag id: UBERON:0011244 name: perpendicular plate of ethmoid def: "The perpendicular plate of the ethmoid bone (vertical plate) is a thin, flattened lamina, polygonal in form, which descends from the under surface of the cribriform plate, and assists in forming the septum of the nose; it is generally deflected a little to one or other side. The anterior border articulates with the spine of the frontal bone and the crest of the nasal bones. The posterior border articulates by its upper half with the sphenoidal crest, by its lower with the vomer. The inferior border is thicker than the posterior, and serves for the attachment of the septal cartilage of the nose. The surfaces of the plate are smooth, except above, where numerous grooves and canals are seen; these lead from the medial foramina on the cribriform plate and lodge filaments of the olfactory nerves." [Wikipedia:Perpendicular_plate_of_ethmoid_bone] +subset: human_subset +subset: mouse_subset synonym: "lamina perpendicularis (os ethmoidale)" EXACT [FMA:52891] synonym: "lamina perpendicularis of ethmoid bone" EXACT [FMA:52891] synonym: "lamina perpendicularis ossis ethmoidalis" RELATED [Wikipedia:Perpendicular_plate_of_ethmoid_bone] @@ -314336,6 +327365,8 @@ relationship: part_of UBERON:0001679 {source="FMA"} ! ethmoid bone id: UBERON:0011245 name: infra-orbital canal of maxilla def: "A canal through the maxilla that is connects the infra-orbital groove and foramen and is the conduit for the passage of the infraorbital nerve and artery." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "canalis infra-orbitalis" EXACT OMO:0003011 [FMA:59048] synonym: "canalis infraorbitalis" EXACT OMO:0003011 [FMA:59048] synonym: "infra-orbital canal" BROAD [FMA:59048] @@ -314361,6 +327392,8 @@ relationship: part_of UBERON:0002397 ! maxilla [Term] id: UBERON:0011246 name: procoracoid bone +subset: human_subset +subset: mouse_subset synonym: "anterior coracoid" RELATED [ISBN:0073040584] synonym: "anterior coracoid bone" RELATED [ISBN:0073040584] synonym: "precoracoid" RELATED [] @@ -314384,6 +327417,8 @@ property_value: taxon_notes "In primitive synapsis 3 centers develop in the shou [Term] id: UBERON:0011247 name: procoracoid cartilage +subset: human_subset +subset: mouse_subset is_a: UBERON:0007844 ! cartilage element is_a: UBERON:0011248 ! procoracoid element intersection_of: UBERON:0011248 ! procoracoid element @@ -314394,6 +327429,8 @@ relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue id: UBERON:0011248 name: procoracoid element def: "Endochondral element of pectoral girdle, positioned posterior to the clavicle and anterior to the coracoid." [https://github.com/obophenotype/uberon/issues/104] +subset: human_subset +subset: mouse_subset synonym: "anterior coracoid" RELATED [ISBN:0073040584] synonym: "precoracoid" RELATED [AAO:0000760, ISBN:0073040584] synonym: "procoracoid" EXACT [AAO:0000760] @@ -314409,6 +327446,8 @@ property_value: external_definition "Cartilaginous, paired structures located on id: UBERON:0011249 name: appendicular skeletal system def: "Subdivision of the skeletal system which consists of the appendicular skeleton plus associated joints." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: FMA:7484 xref: VSAO:0000306 is_a: UBERON:0000075 ! subdivision of skeletal system @@ -314421,6 +327460,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Appendages- id: UBERON:0011250 name: autopod bone def: "A bone that is part of a autopod region. Note that this incudes the carpal and tarsal bones." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002428 ! limb bone is_a: UBERON:0015063 ! autopod endochondral element intersection_of: UBERON:0015063 ! autopod endochondral element @@ -314433,6 +327474,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0011251 name: levator claviculae muscle def: "A skeletal muscle in the posterior triangle of the neck. It originates on the transverse processes of the upper cervical vertebrae and is inserted in the lateral half of the clavicle." [Wikipedia:Levator_claviculae_muscle] +subset: human_subset +subset: mouse_subset synonym: "cleidocervicalis" EXACT [Wikipedia:Levator_claviculae_muscle] synonym: "cleidocervicalis muscle" EXACT [Wikipedia:Levator_claviculae_muscle] synonym: "levator claviculae" EXACT [Wikipedia:Levator_claviculae_muscle] @@ -314454,6 +327497,8 @@ property_value: taxon_notes "The levator claviculae is an infrequently recognize id: UBERON:0011252 name: scent gland def: "Scent glands are exocrine glands found in most mammals. They produce semi-viscous secretions which contain pheromones and other semiochemical compounds. These odor-messengers indicate information such as status, territory marking, mood, and sexual power. The odor may be subliminal-not consciously detectable. Though it is not their primary function, the salivary glands may also function as scent glands in some animals." [Wikipedia:Scent_gland] +subset: human_subset +subset: mouse_subset xref: BTO:0002068 xref: MESH:D012543 xref: Wikipedia:Scent_gland @@ -314487,6 +327532,7 @@ property_value: taxon_notes "present in many moles, and are particularly common id: UBERON:0011256 name: rhinarium def: "Moist, hairless, crenelated area around nostrils of some mammals." [Wikipedia:Rhinarium] +subset: mouse_subset xref: Wikipedia:Rhinarium is_a: UBERON:0003102 ! surface structure is_a: UBERON:0004121 ! ectoderm-derived structure @@ -314522,6 +327568,8 @@ property_value: taxon_notes "Femoral pores are present in all genera in the fami id: UBERON:0011265 name: carpometacarpal joint of digit 1 def: "A carpometacarpal joint that connects to metacarpal 1." [Wikipedia:Carpometacarpal_joint#Thumb] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "carpometacarpal joint of digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "carpometacarpal joint of pollex" EXACT [FMA:35421] @@ -314574,6 +327622,7 @@ property_value: external_definition "Paired intramembranous bones that completes id: UBERON:0011268 name: sublingua def: "A secondary tongue located below the primary tongue in prosimian primates and some primitive mammals. This structure does not have taste buds or salivary glands." [Wikipedia:Sublingua] +subset: mouse_subset synonym: "second tongue" RELATED [Wikipedia:Sublingua] synonym: "under-tongue" RELATED [Wikipedia:Sublingua] xref: Wikipedia:Sublingua @@ -314586,6 +327635,8 @@ relationship: part_of UBERON:0000165 ! mouth id: UBERON:0011270 name: dorsal trunk def: "The part of the trunk that is in the dorsum[cjm]." [UBERONREF:0000006, Wikipedia:Human_back] +subset: human_subset +subset: mouse_subset synonym: "back of trunk" EXACT [FMA:25056] synonym: "dorsal part of trunk" EXACT [] synonym: "dorsum of trunk" EXACT [FMA:25056] @@ -314602,6 +327653,8 @@ property_value: taxon_notes "In humans, the subdivision of trunk which is demarc id: UBERON:0011271 name: caudal-sacral region of vertebral column def: "Subdivision of vertebral column that is posterior to the sacral region and anterior to the caudal region." [UBERONREF:0000006] +subset: human_subset +subset: mouse_subset synonym: "caudal-sacral vertebrae series" EXACT [] synonym: "cloacal vertebrae series" RELATED [http://orcid.org/0000-0002-6601-2165] xref: AAO:0000080 @@ -314612,6 +327665,8 @@ property_value: external_definition "Region of the vertebral column posterior to [Term] id: UBERON:0011272 name: embryonic skin basal layer +subset: human_subset +subset: mouse_subset synonym: "basal cell layer of skin" RELATED [] synonym: "outer epithelium of body" RELATED [Wikipathways:WP2062] xref: EHDAA2:0001845 @@ -314625,6 +327680,8 @@ property_value: editor_note "compare with 'stratum basale of epidermis'. This cl id: UBERON:0011273 name: nail of manual digit 1 def: "A nail that is part of a manual digit 1." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "claw of digit 1 of fore-paw" EXACT [EMAPA:18734] synonym: "nail of manual digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -314643,6 +327700,8 @@ relationship: part_of UBERON:0001463 ! manual digit 1 id: UBERON:0011274 name: nail of manual digit 2 def: "A nail that is part of a manual digit 2." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "claw of digit 2 of fore-paw" EXACT [EMAPA:18735] synonym: "index finger nail" EXACT [FMA:54332] synonym: "nail of index finger" EXACT [FMA:54332] @@ -314661,6 +327720,8 @@ relationship: part_of UBERON:0003622 ! manual digit 2 id: UBERON:0011275 name: nail of manual digit 3 def: "A nail that is part of a manual digit 3." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "claw of digit 3 of fore-paw" EXACT [EMAPA:18736] synonym: "middle finger nail" EXACT [FMA:54335] synonym: "nail of manual digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -314679,6 +327740,8 @@ relationship: part_of UBERON:0003623 ! manual digit 3 id: UBERON:0011276 name: nail of manual digit 4 def: "A nail that is part of a manual digit 4." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "claw of digit 4 of fore-paw" EXACT [EMAPA:18737] synonym: "nail of fourth finger" EXACT [FMA:54338] synonym: "nail of manual digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -314697,6 +327760,8 @@ relationship: part_of UBERON:0003624 ! manual digit 4 id: UBERON:0011277 name: nail of manual digit 5 def: "A nail that is part of a manual digit 5." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "claw of digit 5 of fore-paw" EXACT [EMAPA:18738] synonym: "little finger nail" EXACT [FMA:54341] @@ -314716,6 +327781,8 @@ relationship: part_of UBERON:0003625 ! manual digit 5 id: UBERON:0011278 name: nail of pedal digit 1 def: "A nail that is part of a pedal digit 1." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "big toe nail" EXACT [FMA:54344] synonym: "claw of digit 1 of hind-paw" EXACT [EMAPA:18739] @@ -314736,6 +327803,8 @@ relationship: part_of UBERON:0003631 ! pedal digit 1 id: UBERON:0011279 name: nail of pedal digit 2 def: "A nail that is part of a pedal digit 2." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "claw of digit 2 of hind-paw" EXACT [EMAPA:18740] synonym: "nail of pedal digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "nail of second toe" EXACT [FMA:54347] @@ -314753,6 +327822,8 @@ relationship: part_of UBERON:0003632 ! pedal digit 2 id: UBERON:0011280 name: nail of pedal digit 3 def: "A nail that is part of a pedal digit 3." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "claw of digit 3 of hind-paw" EXACT [EMAPA:18741] synonym: "nail of pedal digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "nail of third toe" EXACT [FMA:54350] @@ -314770,6 +327841,8 @@ relationship: part_of UBERON:0003633 ! pedal digit 3 id: UBERON:0011281 name: nail of pedal digit 4 def: "A nail that is part of a pedal digit 4." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "claw of digit 4 of hind-paw" EXACT [EMAPA:18742] synonym: "fourth toe nail" EXACT [FMA:54353] synonym: "nail of fourth toe" EXACT [FMA:54353] @@ -314787,6 +327860,8 @@ relationship: part_of UBERON:0003634 ! pedal digit 4 id: UBERON:0011282 name: nail of pedal digit 5 def: "A nail that is part of a pedal digit 5." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "claw of digit 5 of hind-paw" EXACT [EMAPA:18743] synonym: "little toe nail" EXACT [FMA:54356] @@ -314806,6 +327881,8 @@ relationship: part_of UBERON:0003635 ! pedal digit 5 id: UBERON:0011283 name: epoophoron def: "A remnant of the Mesonephric duct that can be found next to the ovary and fallopian tube." [Wikipedia:Epoophoron] +subset: human_subset +subset: mouse_subset synonym: "epooephoron" RELATED [Wikipedia:Epoophoron] synonym: "epoöphoron" RELATED [Wikipedia:Epoophoron] synonym: "organ of rosenmueller" RELATED [Wikipedia:Epoophoron] @@ -314851,6 +327928,8 @@ property_value: structure_notes "Their walls are composed primarily of epithelia id: UBERON:0011289 name: pharyngobasilar fascia def: "The pharyngeal aponeurosis (or pharyngobasilar fascia, or fibrous coat), is situated between the mucous and muscular layers. It is thick above where the muscular fibers are wanting, and is firmly connected to the basilar portion of the occipital and the petrous portions of the temporal bones. As it descends it diminishes in thickness, and is gradually lost. It is strengthened posteriorly by a strong fibrous band, which is attached above to the pharyngeal spine on the under surface of the basilar portion of the occipital bone, and passes downward, forming a median raphe, which gives attachment to the Constrictores pharyngis." [Wikipedia:Pharyngobasilar_fascia] +subset: human_subset +subset: mouse_subset synonym: "pharyngeal aponeurosis" EXACT [FMA:55074] synonym: "pharyngeal aponeurosis" RELATED [Wikipedia:Pharyngobasilar_fascia] xref: FMA:55074 @@ -314865,6 +327944,8 @@ relationship: part_of UBERON:0001042 ! chordate pharynx id: UBERON:0011298 name: submucosa of fallopian tube def: "The submucous layer of the wall of the uterine tube." [BTO:0002116] +subset: human_subset +subset: mouse_subset synonym: "submucosa of uterine tube" EXACT [] synonym: "submucous layer of uterine tube" RELATED [BTO:0002116] synonym: "tela submucosa tubae uterinae" EXACT OMO:0003011 [BTO:0002116] @@ -314884,6 +327965,8 @@ name: white matter of telencephalon alt_id: UBERON:0013202 alt_id: UBERON:0022550 def: "A partion of white matter that is part of a telencephalon. This can be further subdivided in some species, for example, into hemisphere white matter and the corpus callosum." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "predominantly white regional part of telencephalon" EXACT [BIRNLEX:1075] synonym: "telencephalic tract/commissure" EXACT [ZFA:0000597] synonym: "telencephalic tracts" NARROW [TAO:0000597] @@ -314905,6 +327988,8 @@ id: UBERON:0011300 name: gray matter of telencephalon alt_id: UBERON:0024186 def: "A portion of gray matter that is part of a telencephalon." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "predominantly gray regional part of telencephalon" EXACT [BIRNLEX:1067] xref: BIRNLEX:1067 xref: FMA:83911 @@ -314916,6 +328001,8 @@ relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0011301 name: manubrium sternum pre-cartilage condensation +subset: human_subset +subset: mouse_subset synonym: "manubrium sterni pre-cartilage condensation" EXACT [EHDAA2:0001063] xref: EHDAA2:0001063 xref: EHDAA:9563 @@ -314959,6 +328046,8 @@ property_value: taxon_notes "Most ascidians lack a postabdomen" xsd:string id: UBERON:0011305 name: superficial part of temporalis def: "The superficial temporalis muscle is a separable part of the temporalis muscle that attaches to the temporalis fascia." [MFMO:0000087] +subset: human_subset +subset: mouse_subset synonym: "anterior temporal" EXACT [MFMO:0000087] synonym: "temporal muscle anterolateral part" EXACT [MFMO:0000087] synonym: "temporales" EXACT [MFMO:0000087] @@ -314979,6 +328068,8 @@ relationship: part_of UBERON:0001598 ! temporalis muscle id: UBERON:0011306 name: deep part of temporalis def: "The deep temporalis muscle is a separable part of the temporalis muscle that that attaches to the bony wall of the braincase and is deep to the superficial temporalis." [MFMO:0000086] +subset: human_subset +subset: mouse_subset synonym: "medial temporal" EXACT [MFMO:0000086] synonym: "posterior temporal" EXACT [MFMO:0000086] synonym: "temporal muscle posterior part" EXACT [MFMO:0000086] @@ -314999,6 +328090,8 @@ relationship: part_of UBERON:0001597 ! masseter muscle id: UBERON:0011307 name: suprazygomatic part of temporalis def: "The suprazygomatic part of the temporalis muscle is a separable part of the deep temporalis that attaches to the superior surface of the temporal root of the zygomatic arch." [MFMO:0000088] +subset: human_subset +subset: mouse_subset synonym: "temporalis pars suprazygomatica" EXACT [MFMO:0000088] synonym: "zygomatic temporalis" EXACT [MFMO:0000088] xref: MFMO:0000088 @@ -315010,6 +328103,8 @@ relationship: part_of UBERON:0001598 {source="FEED"} ! temporalis muscle id: UBERON:0011308 name: pars reflexa of masseter def: "The pars reflexa is a separable part of the superficial masseter muscle that attaches to the medial surface of the mandible." [FEED:FEED] +subset: human_subset +subset: mouse_subset synonym: "masseter, pars reflexa" EXACT [FEED:FEED] synonym: "pars reflexa" BROAD [FEED:FEED] is_a: UBERON:0000064 ! organ part @@ -315022,6 +328117,8 @@ id: UBERON:0011309 name: body of mandible def: "The zone of the mandible that carries the teeth." [http://www.avdc.org/Nomenclature.pdf] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "body of the mandible" RELATED [Wikipedia:Body_of_mandible] synonym: "corpus mandibulae" EXACT OMO:0003011 [http://www.avdc.org/Nomenclature.pdf] synonym: "mandibular body" EXACT [FMA:52827] @@ -315037,6 +328134,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011310 name: masseteric fossa def: ".The fossa for the masseter. In some therapsids, the coronoid process of the dentary bears a large external depression which accommodates the masseter -- an important muscle in closing and in grinding motions of the jaw." [http://palaeos.com/vertebrates/glossary/glossaryM.html] +subset: human_subset +subset: mouse_subset synonym: "masseteric cavity" RELATED [] is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure @@ -315047,6 +328146,8 @@ property_value: external_definition "fossa on the lateral surface of the mandibl id: UBERON:0011311 name: hyoepiglottic ligament def: "An elastic band connecting the anterior surface of the epiglottis to the upper border of the body of the hyoid bone." [Wikipedia:Hyoepiglottic_ligament] +subset: human_subset +subset: mouse_subset synonym: "hyo-epiglottic ligament" EXACT [FMA:55227] synonym: "igamentum hyoepiglotticum" EXACT OMO:0003011 [Wikipedia:Hyoepiglottic_ligament] xref: FMA:55227 @@ -315063,6 +328164,8 @@ relationship: part_of UBERON:0001737 ! larynx id: UBERON:0011312 name: hyoepiglottic muscle comment: Developed in mammals other than human. EDITOR NOTE: TODO add relationship to hyoepiglottic ligament. +subset: human_subset +subset: mouse_subset synonym: "hyo-epiglottic muscle" EXACT [] synonym: "hyoepiglotticus" EXACT [] synonym: "hyoepiglottus" EXACT [] @@ -315073,6 +328176,8 @@ relationship: attaches_to UBERON:0003999 ! hyoid bone body [Term] id: UBERON:0011313 name: posterior subdivision of masseter +subset: human_subset +subset: mouse_subset synonym: "masseter, posterior" EXACT [FEED:FEED] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034944 ! zone of organ @@ -315086,6 +328191,8 @@ property_value: external_definition "The posterior masseter is a separable part [Term] id: UBERON:0011314 name: anterior subdivision of masseter +subset: human_subset +subset: mouse_subset synonym: "masseter, anterior" EXACT [FEED:FEED] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034944 ! zone of organ @@ -315099,6 +328206,8 @@ property_value: external_definition "The anterior masseter is a separable part o id: UBERON:0011315 name: digastric branch of facial nerve def: "The digastric branch of facial nerve arises close to the stylomastoid foramen, and divides into several filaments, which supply the posterior belly of the Digastricus; one of these filaments joins the glossopharyngeal nerve." [Wikipedia:Digastric_part_of_facial_nerve] +subset: human_subset +subset: mouse_subset synonym: "branch of facial nerve to posterior belly of digastric" RELATED [FMA:53288] synonym: "digastric branch" BROAD [Wikipedia:Digastric_part_of_facial_nerve] synonym: "digastric branch of facial nerve (CN VII)" EXACT [FEED:FEED] @@ -315121,6 +328230,8 @@ relationship: part_of UBERON:0001647 ! facial nerve id: UBERON:0011316 name: nerve to stylohyoid from facial nerve def: "The stylohyoid branch of facial nerve frequently arises in conjunction with the digastric branch; it is long and slender, and enters the Stylohyoideus about its middle." [Wikipedia:Stylohyoid_part_of_facial_nerve] +subset: human_subset +subset: mouse_subset synonym: "facial nerve stylohyoid branch" EXACT [FMA:53298] synonym: "nerve to stylohyoid" EXACT [FMA:53298] synonym: "ramus stylohyoideus" EXACT [FMA:53298] @@ -315143,6 +328254,8 @@ relationship: part_of UBERON:0001647 ! facial nerve id: UBERON:0011317 name: nerve to stylopharyngeus from glossopharyngeal nerve def: "The stylopharyngeal branch of glossopharyngeal nerve is distributed to the Stylopharyngeus." [Wikipedia:Stylopharyngeal_branch_of_glossopharyngeal_nerve] +subset: human_subset +subset: mouse_subset synonym: "branch of glossopharyngeal nerve to stylopharyngeus" EXACT [FMA:53487] synonym: "nerve to stylopharyngeus" EXACT [FMA:53487] synonym: "ramus musculi stylopharyngei nervus glossopharyngei" EXACT OMO:0003011 [FMA:TA] @@ -315162,6 +328275,8 @@ relationship: part_of UBERON:0001649 ! glossopharyngeal nerve id: UBERON:0011318 name: capsule of temporomandibular joint def: "The articular capsule (capsular ligament) is a thin, loose envelope, attached above to the circumference of the mandibular fossa and the articular tubercle immediately in front; below, to the neck of the condyle of the mandible." [Wikipedia:Capsule_of_temporomandibular_joint] +subset: human_subset +subset: mouse_subset synonym: "articular capsule of temporomandibular joint" EXACT [FMA:57050] synonym: "capsula articularis articulationis temporomandibularis" EXACT OMO:0003011 [Wikipedia:Capsule_of_the_temporomandibular_joint] xref: FMA:57050 @@ -315178,6 +328293,8 @@ relationship: part_of UBERON:0003700 ! temporomandibular joint id: UBERON:0011319 name: disk of temporomandibular joint def: "The fibrocartilaginous plate that separates the joint into upper and lower cavities." [BTO:0003675, Wikipedia:Articular_disk_of_the_temporomandibular_joint] +subset: human_subset +subset: mouse_subset synonym: "articular disc of temporomandibular joint" EXACT [FMA:57059] synonym: "articular disc of temporomandibular joint" RELATED [BTO:0003675] synonym: "articular disk of temporomandibular joint" EXACT [FMA:57059] @@ -315200,6 +328317,8 @@ relationship: part_of UBERON:0003700 {source="BTO"} ! temporomandibular joint [Term] id: UBERON:0011320 name: ligament of temporomandibular joint +subset: human_subset +subset: mouse_subset synonym: "temporomandibular joint ligament" EXACT [FMA:57070] xref: FMA:57070 xref: SCTID:127861009 @@ -315214,6 +328333,8 @@ relationship: part_of UBERON:0003700 ! temporomandibular joint id: UBERON:0011321 name: masseteric nerve def: "A muscular branch of the mandibular nerve passing to the medial surface of the masseter muscle, which it innervates." [http://medical-dictionary.thefreedictionary.com/masseteric+nerve] +subset: human_subset +subset: mouse_subset synonym: "nervus massetericus" EXACT OMO:0003011 [Wikipedia:Masseteric_nerve] xref: FMA:53103 xref: SCTID:280254006 @@ -315229,6 +328350,8 @@ relationship: part_of UBERON:0000375 ! mandibular nerve id: UBERON:0011322 name: mylohyoid nerve def: "A nerve that innervates the mylohyoid muscle and the anterior belly of the digastric muscle." [Wikipedia:Mylohyoid_nerve] +subset: human_subset +subset: mouse_subset synonym: "branch of inferior alveolar nerve to mylohyoid" EXACT [FMA:53247] synonym: "mylodigastric nerve" EXACT [FMA:53247] synonym: "mylohyoid branch of inferior alveolar nerve" EXACT [FMA:53247] @@ -315248,6 +328371,8 @@ relationship: innervates UBERON:0001564 ! mylohyoid muscle id: UBERON:0011325 name: pharyngeal nerve plexus def: "The pharyngeal plexus is a network of nerve fibers innervating most of the palate, larynx, and pharynx. It is located on the surface of the middle pharyngeal constrictor muscle." [Wikipedia:Pharyngeal_plexus_of_vagus_nerve] +subset: human_subset +subset: mouse_subset synonym: "pharyngeal nerve plexus" EXACT [FMA:82453] synonym: "pharyngeal plexus of vagus nerve" EXACT [Wikipedia:Pharyngeal_plexus_of_vagus_nerve] synonym: "plexus pharyngeus nervi vagi" EXACT OMO:0003011 [Wikipedia:Pharyngeal_plexus_of_vagus_nerve] @@ -315264,6 +328389,8 @@ id: UBERON:0011326 name: superior laryngeal nerve def: "The superior laryngeal nerve is a branch of the vagus nerve. It arises from the middle of the ganglion nodosum and in its course receives a branch from the superior cervical ganglion of the sympathetic. It descends, by the side of the pharynx, behind the internal carotid artery, and divides into two branches: external laryngeal nerve internal laryngeal nerve A superior laryngeal nerve palsy changes the pitch of the voice and causes an inability to make explosive sounds. If no recovery is evident three months after the palsy initially presents, the damage is most likely to be permanent. A bilateral palsy presents as a tiring and hoarse voice." [Wikipedia:Superior_laryngeal_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "nervus laryngealis superior" EXACT [FMA:6239] synonym: "nervus laryngeus superior" EXACT OMO:0003011 [Wikipedia:Superior_laryngeal_nerve] synonym: "superior laryngeal branch of inferior vagal ganglion" EXACT [FMA:6239] @@ -315284,6 +328411,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011327 name: deep temporal nerve def: "The deep temporal nerves, branches of the mandibular division of the trigeminal nerve, are two in number, anterior and posterior. They pass above the upper border of the pterygoideus externus and enter the deep surface of the temporalis." [Wikipedia:Deep_temporal_nerves] +subset: human_subset +subset: mouse_subset synonym: "deep temporal nerve" RELATED [Wikipedia:Deep_temporal_nerves] synonym: "nervi temporales profundi" EXACT OMO:0003004 [FMA:TA] xref: FMA:53187 @@ -315297,6 +328426,8 @@ relationship: part_of UBERON:0000375 ! mandibular nerve [Term] id: UBERON:0011332 name: extrinsic tongue pre-muscle mass +subset: human_subset +subset: mouse_subset xref: EMAPA:17884 is_a: UBERON:0005865 ! pre-muscle condensation intersection_of: UBERON:0005865 ! pre-muscle condensation @@ -315307,6 +328438,8 @@ relationship: has_potential_to_develop_into UBERON:0001575 ! extrinsic muscle of id: UBERON:0011342 name: surface of mandible def: "An anatomical surface that is part of a mandible." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mandibular surface" EXACT [FMA:57558] xref: FMA:57558 is_a: UBERON:0036215 ! anatomical surface region @@ -315318,6 +328451,8 @@ relationship: part_of UBERON:0001684 ! mandible [Term] id: UBERON:0011343 name: medial surface of mandible +subset: human_subset +subset: mouse_subset synonym: "internal surface of ramus of mandible" RELATED [FMA:59464] synonym: "medial surface of mandibular ramus" NARROW [FMA:59464] synonym: "medial surface of ramus of mandible" EXACT [FMA:59464] @@ -315328,6 +328463,8 @@ disjoint_from: UBERON:0011344 {source="lexical"} ! lateral surface of mandible [Term] id: UBERON:0011344 name: lateral surface of mandible +subset: human_subset +subset: mouse_subset synonym: "external surface of ramus of mandible" RELATED [FMA:59463] synonym: "lateral surface of mandibular ramus" BROAD [FMA:59463] synonym: "lateral surface of ramus of mandible" EXACT [FMA:59463] @@ -315338,6 +328475,8 @@ is_a: UBERON:0011342 ! surface of mandible id: UBERON:0011345 name: pharyngeal raphe def: "The Pharyngeal raphe is a raphe that serves as the origin and insertion for several of the pharyngeal constrictors." [Wikipedia:Pharyngeal_raphe] +subset: human_subset +subset: mouse_subset synonym: "raphe pharyngis" EXACT [Wikipedia:Pharyngeal_raphe] xref: FMA:55077 xref: SCTID:179763009 @@ -315351,6 +328490,8 @@ property_value: external_ontology_notes "isa anatomical line in FMA" xsd:string id: UBERON:0011346 name: palatine raphe def: "A raphe running across the palate, from the palatine uvula to the incisive papilla." [Wikipedia:Palatine_raphe] +subset: human_subset +subset: mouse_subset synonym: "raphe palati" EXACT [Wikipedia:Palatine_raphe] xref: FMA:75111 xref: Wikipedia:Palatine_raphe @@ -315363,6 +328504,8 @@ property_value: external_ontology_notes "isa anatomical line in FMA" xsd:string id: UBERON:0011347 name: raphe of hard palate def: "A palatine raphe that is part of a hard palate." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: SCTID:368683007 is_a: UBERON:0011346 ! palatine raphe intersection_of: UBERON:0011346 ! palatine raphe @@ -315373,6 +328516,8 @@ relationship: part_of UBERON:0003216 ! hard palate id: UBERON:0011348 name: raphe of soft palate def: "A palatine raphe that is part of a soft palate." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: SCTID:245785003 is_a: UBERON:0011346 ! palatine raphe intersection_of: UBERON:0011346 ! palatine raphe @@ -315383,6 +328528,8 @@ relationship: part_of UBERON:0001733 ! soft palate id: UBERON:0011349 name: pterygomandibular raphe def: "The pterygomandibular raphe (pterygomandibular ligament) is a tendinous band of the buccopharyngeal fascia, attached by one extremity to the hamulus of the medial pterygoid plate, and by the other to the posterior end of the mylohyoid line of the mandible. Its medial surface is covered by the mucous membrane of the mouth. Its lateral surface is separated from the ramus of the mandible by a quantity of adipose tissue. Its posterior border gives attachment to the superior pharyngeal constrictor muscle. Its anterior border attaches to the posterior edge of the buccinator." [Wikipedia:Pterygomandibular_raphe] +subset: human_subset +subset: mouse_subset synonym: "pterygomandibular ligament" RELATED [Wikipedia:Pterygomandibular_raphe] synonym: "pterygomandibular raph%c3%a9" RELATED [Wikipedia:Pterygomandibular_raphe] xref: FMA:55618 @@ -315396,6 +328543,8 @@ property_value: external_ontology_notes "isa anatomical line in FMA" xsd:string [Term] id: UBERON:0011350 name: mylohyoid raphe +subset: human_subset +subset: mouse_subset synonym: "raphe of the mylohyoid" RELATED [] is_a: UBERON:0002384 ! connective tissue relationship: in_taxon NCBITaxon:7742 ! Vertebrata @@ -315404,6 +328553,8 @@ relationship: in_taxon NCBITaxon:7742 ! Vertebrata id: UBERON:0011357 name: Reissner's fiber def: "An acellular strand that runs from subcommissural organ caudally through the ventricular system and central canal to the ampulla caudalis. Develops from glycoproteins secreted into CSF." [ISBN:0471888893, Wikipedia:Reissner's_fiber] +subset: human_subset +subset: mouse_subset synonym: "Reissner's fibre" EXACT [] xref: NLX:151878 xref: Wikipedia:Reissner's_fiber @@ -315418,6 +328569,8 @@ property_value: taxon_notes "Reissner's fiber is present in the central canal of id: UBERON:0011358 name: infundibular organ comment: Resembles the subcommisural organ structurally, ultrastructurally and immunochemically[Niewenhuys] Gives rise to Reissner's fiber; however secretions are not identical to those of SCO [PMID:9550137][DOI:10.1007/BF00303086] +subset: human_subset +subset: mouse_subset synonym: "infundibular organ of Boeke" EXACT [] synonym: "ventral infundibular organ" EXACT [] is_a: UBERON:0000073 ! regional part of nervous system @@ -315444,6 +328597,8 @@ relationship: part_of UBERON:0002240 {source="BTO"} ! spinal cord id: UBERON:0011360 name: ampulla caudalis def: "A ventricle-like space at the end of the central canal." [ISBN:0471888893] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002291 {notes="in caudal end of"} ! central canal of spinal cord @@ -315451,6 +328606,8 @@ relationship: part_of UBERON:0002291 {notes="in caudal end of"} ! central canal id: UBERON:0011362 name: cranial blood vasculature def: "A blood vasculature that is part of a head." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cranial blood vessel" EXACT [ZFA:0005297] synonym: "cranial blood vessels" RELATED OMO:0003004 [TAO:0005297] synonym: "set of blood vessels of head" EXACT [] @@ -315467,6 +328624,8 @@ property_value: external_definition "Blood vessel part of cranial vasculature.[T id: UBERON:0011363 name: cranial lymph vasculature def: "A lymph vasculature that is part of a head." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cranial lymph vessel" EXACT [ZFA:0005298] synonym: "cranial lymph vessels" RELATED OMO:0003004 [TAO:0005298] synonym: "cranial lymphatics" EXACT [UBERON:cjm] @@ -315486,6 +328645,8 @@ id: UBERON:0011364 name: cleidocephalicus muscle def: "The cleidomastoideus is a thick, strap-like muscle that together with the cleidocervicalis forms the proximal part of the brachiocephalicus. It lies beneath the cleidocervicalis. Its origin is the clavicular tendon with its insertion being at the mastoid process of the temporal bone. It is distinctly narrow and is united with the cleidocervicalis and cleidobrachialis by the clavicular tendon. Together with the other two components of the brachiocephalicus muscle, its primary function is to advance the free limb, however, it can also act as an shoulder extensor. Acting bilaterally, it fixes and depresses the neck, while by its unilateral action, it allows the head and neck to be drawn to the side. Its blood supply is the inferior cervical, carotid and vertebral arteries and its nerve supply is the spinal accessory, cervical and axillary nerves." [MURDOCH:379] comment: alt def: "Combination of cleidomastoid and cleidocervical muscles" +subset: human_subset +subset: mouse_subset synonym: "cleidocephalic" EXACT [MA:0002275] synonym: "cleidocephalic muscle" EXACT [] synonym: "cleidocephalicus" EXACT [] @@ -315511,6 +328672,8 @@ relationship: part_of UBERON:0011368 ! brachiocephalic muscle id: UBERON:0011366 name: cleidobrachialis muscle def: "This muscle makes up the distal segment of the brachiocephalicus. It originates at the clavicular tendon but functionally, from the head and neck through the cleidocervicalis. It inserts at the distal end of the cranial border of the humerus, where it lies between the biceps brachii medially and the brachialis laterally. The muscle partly covers the pectoral muscles at their insertions. In conjunction with the cleidocervicalis, it advances the limb, extends the shoulder and causes lateral movement of the head and neck." [MURDOCH:376] +subset: human_subset +subset: mouse_subset synonym: "cleidobrachial" EXACT [MA:0002274] synonym: "cleidobrachial muscle" EXACT [] synonym: "cleidobrachialis" EXACT [] @@ -315534,6 +328697,8 @@ id: UBERON:0011368 name: brachiocephalic muscle def: "The brachiocephalicus is a long and flat, complex of muscles that extends from the lower half of the humeral shaft to the head and neck. The muscle divides into two parts at the clavicular intersection. This is also the point of origin for all the muscles that make up the brachiocephalicus. This point is situated just cranial to the shoulder. The two main sections are the cleidobrachialis which is distal to the clavicular intersection and the cleidocephalicus which extends proximally to the clavivular intersection. The cleidocephalicus can also be divided into the pars cervicalis, which inserts on the broad aponeurosis, over the fibrous raphe of the cranial half of the neck. The other part, the pars mastoideus inserts on the mastoid process of the temporal bone via a strong tendon. The cleidobrachialis extends distally from the clavicular intersection and inserts on the cranial edge of the distal half of the humerus. The tendon that inserts the cleidobrachialis lies between the brachialis muscle and the biceps brachii. As a result of the brachiocephalicus spanning a large region it has the ability to provide a number of actions. These include extending the shoulder joint, protracts the limb, provides lateral movement of the head and allows the neck to be depressed." [http://ccg.murdoch.edu.au/museum/] comment: The brachiocephalicus is more complex than other muscles of the forelimb. It consists of 2 elements that unite at the clavicle in dogs. In dogs the caudal part, known as the cleidobrachialis, runs from the clavicle to the humerus and is closely associated with the deltoid. The cranial portion runs from the clavicle to various attachments via a broad aponeurosis on the upper part of the head and neck. It is called the cleidomastoideus in the dog because it inserts on the mastoid process of the temporal bone. It may have a different name, like cleido-occipitalis, in other mammals. The name brachiocephalicus signifies that this complex of muscles runs from the upper arm to the head and does not specify the details of muscle attachments because these vary so much from species to species. The brachiocephalicus advances the limb and may also extend the shoulder joint, but this depends on the cranial attachment being fixed and the limb being free to move. However, when the forelimb is firmly on the ground and the head is free to move, it forces the head and neck either ventrally or to one side depending on whether or not both muscles act in tandem +subset: human_subset +subset: mouse_subset synonym: "brachiocephalicus" BROAD [] xref: EMAPA:37685 {source="MA:th"} is_a: UBERON:0001482 ! muscle of shoulder @@ -315547,6 +328712,8 @@ relationship: attaches_to UBERON:0011220 ! mastoid process of temporal bone id: UBERON:0011369 name: omotransversarius muscle def: "The omotransversarius is a straplike muscle, which advances and adducts the forelimb, as well as flexes the neck laterally. It covers the transverse processes of the cervical vertebrae, lying to their side. The omotransversarius lies ventral to the trapezius, cranial to the deltoid muscle and is covered cranially by the cleidocervicalis. It extends from the atlas to the spine of the scapula, with its origin on the transverse process of the atlas and its insertion in the distal end of the spine of the scapula. Its name can be split into omo, which is Greek for shoulder, and tranversarius which relates to its attachment to the transverse process of the atlas. This muscle is innervated by the accessory nerve." [MURDOCH:1433] +subset: human_subset +subset: mouse_subset synonym: "omotransverse" EXACT [MA:0002349] synonym: "omotransverse muscle" EXACT [] xref: EMAPA:37690 {source="MA:th"} @@ -315564,6 +328731,8 @@ relationship: attaches_to UBERON:0011370 ! transverse process of atlas id: UBERON:0011370 name: transverse process of atlas def: "A transverse process of vertebra that is part of a vertebral bone 1." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:23981 xref: SCTID:181895009 xref: Wikipedia:Transverse_processes @@ -315578,6 +328747,8 @@ relationship: part_of UBERON:0001092 ! vertebral bone 1 id: UBERON:0011371 name: sternocephalicus muscle def: "The sternocephalicus is a flat muscle and its caudal border is adjacent to the ventral border of the brachiocephalicus. The lateral aspect of this muscle is crossed obliquely by the external jugular vein. It originates as a unit on the first sternebrae. The cranial portion of the muscle divides into two separate sections with different insertion points. These are the sternomastoideus and the sterno-occipitalis. The ventral portion, the sternomastiodeus is the stronger and main continuation of the sternocephalicus, which inserts on the mastoid part of the temporal bone. The thin but wide dorsal segment, the sterno-occipitalis attaches to the dorsal nuchal crest by a thin aponeurosis. The main action provided by the sternocephalicus is movement of the head and neck to the side. Ventral branches of the cervical nerves are attached to this muscle." [MURDOCH:1749] +subset: human_subset +subset: mouse_subset synonym: "sternocephalicus" EXACT [] xref: NCIT:C117980 xref: SCTID:21636001 @@ -315594,6 +328765,8 @@ relationship: has_muscle_origin UBERON:0002208 ! sternebra id: UBERON:0011374 name: prepuce def: "A retractable double-layered fold of skin and mucous membrane that covers the glans penis or clitoris. Glands may also be present." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: NCIT:C12323 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure @@ -315610,6 +328783,8 @@ property_value: has_relational_adjective "preputial" xsd:string id: UBERON:0011375 name: skin of prepuce of clitoris def: "A zone of skin that is part of a prepuce of clitoris." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "preputial skin of clitoris" EXACT [FMA:27886] xref: FMA:27886 xref: SCTID:367670008 @@ -315623,6 +328798,8 @@ relationship: part_of UBERON:0005299 ! prepuce of clitoris id: UBERON:0011376 name: iliothoracic muscle def: "The iliothoracic group is made up of the abdominal wall muscles: rectus abdominis, external abdominal oblique, internal abdominal obliquus, and the transversus abdominis." [http://emedicine.medscape.com/article/1899031-overview] +subset: human_subset +subset: mouse_subset synonym: "iliothoracic" EXACT [MA:0002322] xref: EMAPA:37605 {source="MA:th"} xref: MA:0002322 @@ -315637,6 +328814,8 @@ relationship: part_of UBERON:0005462 ! lower back id: UBERON:0011377 name: femorothoracic muscle def: "The femorospinal group is made up of the psoas major and iliacus muscles." [http://emedicine.medscape.com/article/1899031-overview] +subset: human_subset +subset: mouse_subset synonym: "femorothoracic" EXACT [MA:0002322] is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0005173 ! abdominal segment element @@ -315647,6 +328826,8 @@ relationship: part_of UBERON:0005462 ! lower back id: UBERON:0011379 name: male external urethral sphincter def: "The external sphincter muscle of urethra (or sphincter urethrae membranaceae) surrounds the whole length of the membranous portion of the urethra, and is enclosed in the fasciæ of the urogenital diaphragm. They arch across the front of the urethra and bulbourethral glands, pass around the urethra, and behind it unite with the muscle of the opposite side, by means of a tendinous raphé." [Wikipedia:External_sphincter_muscle_of_male_urethra] +subset: human_subset +subset: mouse_subset synonym: "bulboglandular" RELATED [MA:0002273] synonym: "bulboglandular muscle" RELATED [] synonym: "external urethral sphincter of male urethra" EXACT [FMA:19733] @@ -315672,6 +328853,8 @@ property_value: external_ontology_notes "MA includes a term bulboglandular - som id: UBERON:0011380 name: female external urethral sphincter def: "The external sphincter muscle of female urethra is a muscle which controls urination." [Wikipedia:External_sphincter_muscle_of_female_urethra] +subset: human_subset +subset: mouse_subset synonym: "compressor urethrae" RELATED INCONSISTENT [Wikipedia:External_sphincter_muscle_of_female_urethra] synonym: "external urethral sphincter of female urethra" EXACT [] synonym: "musculus sphincter urethrae externus (urethra feminina)" EXACT OMO:0003011 [FMA:19778, FMA:TA] @@ -315693,6 +328876,8 @@ relationship: part_of UBERON:0000474 ! female reproductive system id: UBERON:0011383 name: inferior pancreaticoduodenal vein def: "A blood vessel running parallel to the inferior pancreatico-duodenal artery that drains blood from the pancreas and duodenum into the splenic vein." [ncithesaurus:Inferior_Pancreatico-Duodenal_Vein] +subset: human_subset +subset: mouse_subset synonym: "inferior pancreatico-duodenal vein" EXACT [MA:0002191] xref: EMAPA:37616 {source="MA:th"} xref: MA:0002191 @@ -315703,6 +328888,8 @@ is_a: UBERON:0004690 ! pancreaticoduodenal vein [Term] id: UBERON:0011384 name: superior pancreaticoduodenal vein +subset: human_subset +subset: mouse_subset synonym: "superior pancreatico-duodenal vein" EXACT [MA:0002192] synonym: "vena pancreaticoduodenalis superior" EXACT [] xref: EMAPA:37194 {source="MA:th"} @@ -315713,6 +328900,8 @@ is_a: UBERON:0004690 ! pancreaticoduodenal vein id: UBERON:0011385 name: parotidoauricular muscle def: "Is one of the numerus muscles of the external ear and is of importance since it is encountered in the operation for drainage of infections of the external ear of the dog. As its name suggests, it arises from the fascia over the parotid gland and approaches the auricle from the ventrolateral direction. This muscle is supplied by the facial nerve.The muscles of the external ear with their scattered origins and precisely located insertions provide for displacement and rotation of the ear in all directions. These muscles also have a collective function in communication both within and between species." [MURDOCH:1519] +subset: human_subset +subset: mouse_subset synonym: "parotidoauricular" EXACT [MA:0002352] synonym: "parotidoauricularis" EXACT [] xref: EMAPA:37692 {source="MA:th"} @@ -315727,6 +328916,8 @@ relationship: has_muscle_origin UBERON:0001831 ! parotid gland id: UBERON:0011386 name: facial modiolus def: "A chiasma of facial muscles held together by fibrous tissue, located lateral and slightly superior to each angle of the mouth. It is important in moving the mouth, facial expression and in dentistry. It derives its motor nerve supply from the facial nerve, and its blood supply from labial branches of the facial artery. It is contributed to by the following muscles: orbicularis oris, buccinator, levator anguli oris, depressor anguli oris, zygomaticus major, risorius quadratus labii superioris, quadratus labii inferioris." [Wikipedia:Modiolus_(face)] +subset: human_subset +subset: mouse_subset synonym: "modiolus" BROAD [MFMO:0000057] synonym: "modiolus anguli oris" EXACT OMO:0003011 [FMA:46837, FMA:TA] xref: FMA:46837 @@ -315739,6 +328930,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/471" xsd: [Term] id: UBERON:0011387 name: constrictor vulvae muscle +subset: human_subset +subset: mouse_subset synonym: "constrictor vulvae" EXACT [MA:0002281] synonym: "sphincter vaginae" RELATED [Wikipedia:Bulbospongiosus_muscle] xref: EMAPA:37483 {source="MA:th"} @@ -315753,6 +328946,8 @@ property_value: external_definition "The constrictor muscle of the labia is weak id: UBERON:0011388 name: male bulbospongiosus muscle def: "A bulbospongiosus muscle that is part of a male reproductive system." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bulbospongiosus of male" EXACT [] synonym: "male bulbospongiosus" EXACT [] xref: SCTID:244973006 @@ -315772,6 +328967,8 @@ id: UBERON:0011389 name: bulbospongiosus muscle def: "The bulbospongiosus is the thick extrapelvic continuation of the urethralis. It originates from the perineal body (and midline raphe over corpus spongiosum in male) and inserts at the superficial perineal membrane and dorsal penile or clitoral aponeurosis. In males, the bulbospongiosus muscles are united and surround the base of the penis. They aid in emptying of urine and ejaculate from urethra. In females, these muscles are separated in the middle by the vagina and act to constrict the vaginal introitus. They can also stop the flow of blood into veins, which maintains an erection in the penis of the male and the clitoris of the female. Its nerve connection is the perineal branch of the pudendal nerve (S2, 3, 4)." [MURDOCH:245, Wikipedia:Bulbospongiosus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "bulbocavernosus" RELATED [Wikipedia:Bulbospongiosus_muscle] synonym: "bulbocavernosus muscle" RELATED [Wikipedia:Bulbospongiosus_muscle] synonym: "bulbocavernous" RELATED [Wikipedia:Bulbospongiosus_muscle] @@ -315795,6 +328992,8 @@ id: UBERON:0011390 name: pudendal nerve def: "The pudendal nerve is a somatic nerve in the pelvic region that innervates the external genitalia of both sexes, as well as sphincters for the bladder and the rectum. It originates in Onuf's nucleus in the sacral region of the spinal cord." [Wikipedia:Pudendal_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "internal pudendal nerve" RELATED [Wikipedia:Pudendal_nerve] synonym: "nervus pudendae" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "nervus pudendales" EXACT OMO:0003011 [doi:10.1002/ca.23705] @@ -315820,6 +329019,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011391 name: perineal nerve def: "A nerve arising from the pudendal nerve that supplies the perineum." [Wikipedia:Perineal_nerve] +subset: human_subset +subset: mouse_subset synonym: "perineal branch of pudendal nerve" EXACT [FMA:21866] xref: FMA:21866 xref: SCTID:303236009 @@ -315835,6 +329036,8 @@ relationship: part_of UBERON:0011390 ! pudendal nerve id: UBERON:0011392 name: blood vessel internal elastic membrane def: "A layer of elastic tissue that forms the outermost part of the tunica intima of blood vessels." [Wikipedia:Internal_elastic_lamina] +subset: human_subset +subset: mouse_subset synonym: "inner elastic lamina" EXACT [FMA:68205] synonym: "internal elastic lamina" EXACT [FMA:68205] synonym: "internal elastic membrane" EXACT [MA:0002863] @@ -315856,6 +329059,8 @@ id: UBERON:0011415 name: cutaneous trunci muscle def: "Lying just below the skin, cutaneus trunci is one of very few cutaneus muscles. It composes of a thin sheets of muscle that spred over the body in the superficial fasciae. Their role is to twich the skin to rid of pests etc. Cuteneus muscles are found in all domestic species." [MURDOCH:2210] comment: covers the entire body with a thin layer of muscle under the deepest layer of the skin. When an area of neuronal subluxation is stimulated with the activator, the cutaneous trunci muscle contracts and causes an involuntary reflexive spasm or "twitch" of the skin +subset: human_subset +subset: mouse_subset synonym: "cutaneous trunci" EXACT [MA:0002285] xref: EMAPA:37501 {source="MA:th"} xref: MA:0002285 @@ -315866,6 +329071,8 @@ is_a: UBERON:0006821 ! cutaneous muscle id: UBERON:0011464 name: levator nasolabialis muscle def: "Is a principal muscle of the lips which arises over the dorsum of the nose. It runs cranioventrally to insert partly on the wing of the nostril and partly into the lateral part of the upper lip. This muscles function includes dilation of the nostril, elevation and retraction of the upper lip. Branches of the facial nerve supply innervation to this muscle." [MURDOCH:1180] +subset: human_subset +subset: mouse_subset synonym: "levator nasolabialis" EXACT [MA:0002334] xref: EMAPA:37502 {source="MA:th"} xref: MA:0002334 @@ -315877,6 +329084,8 @@ is_a: UBERON:0006821 ! cutaneous muscle id: UBERON:0011465 name: longissimus atlantis muscle def: "A muscle that runs beneath the longissimus capitis and inserts on the wing of the atlas." [Wikipedia:Musculus_longissimus] +subset: human_subset +subset: mouse_subset synonym: "longissimus atlantis" EXACT [MA:0002335] xref: EMAPA:37649 {source="MA:th"} xref: MA:0002335 @@ -315890,6 +329099,7 @@ property_value: taxon_notes "present in horses and dogs" xsd:string id: UBERON:0011472 name: ventral lateral sacrocaudal muscle def: "The ventral lateral sacrocaudal is a long strong muscle consisting of numerous individual parts. Its first segment originates from the last lumbar vertebrae and the remainder from the transverse processes of the caudal vertebrae. From the segmented bellies arise long tendons which are embedded in caudal fascia. The first of these tendons inserts onto the sixth caudal vertebrae, the second onto the seventh and so on until the last caudal vertebrae. The ventral lateral sacrocaudal acts to flex the tail and occasionally assists with lateral movement." [MURDOCH:2183] +subset: mouse_subset synonym: "lumbosacrocaudalis" EXACT [MA:0002342] synonym: "lumbosacrocaudalis muscle" EXACT [MA:0002342] synonym: "ventral lateral sacrocaudal" EXACT [MURDOCH:2183] @@ -315907,6 +329117,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0011495 name: rectus thoracis muscle def: "Rectus thoracis is a very small quadrilateral muscle sheet from the lateral thorax runs from the 3rd-1st rib that is in continuation with rectus abdominis. Its functioning muscle in respiration." [MURDOCH:2224] +subset: human_subset +subset: mouse_subset synonym: "rectus thoracis" EXACT [MA:0002366] xref: EMAPA:37709 {source="MA:th"} xref: MA:0002366 @@ -315923,6 +329135,8 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk id: UBERON:0011508 name: sphincter colli superficialis muscle def: "The sphincter colli superficialis is composed of transverse muscle fibers, and covers the entire area between the lower jaw and chest. The muscle is used to tighten the skin on the underside of the throat." [Wikipedia:Platysma] +subset: human_subset +subset: mouse_subset synonym: "M. sphincter colli superficialis" EXACT [] synonym: "sphincter colli superficialis" EXACT [MA:0002380] xref: EMAPA:37699 {source="MA:th"} @@ -315939,6 +329153,8 @@ id: UBERON:0011509 name: sphincter colli profundus muscle def: "The sphincter colli profundus lies below the platysma in the area of the parotid gland (gland regions)." [Wikipedia:Platysma] comment: The muscles of the mid and upper face derive from the embryonic sphincter colli profundus muscle +subset: human_subset +subset: mouse_subset synonym: "M. sphincter colli profundus" EXACT [] synonym: "sphincter colli profundus" EXACT [] is_a: UBERON:0002377 ! muscle of neck @@ -315949,6 +329165,8 @@ id: UBERON:0011510 name: cloacal bursa def: "An evagination of the cloaca. In Testudines these are hypothesized to function in different physiological roles, primarily in respiration." [PMID:11479904, UBERON:cjm] comment: Taxon notes: in cryptodires, bursae apparently function primarily in buoyancy control and secondarily in ion transport and nesting, but several pleurodires have been shown recently to use them in aquatic respiration.[PMID:11479904] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000063 ! organ subunit relationship: capable_of_part_of GO:0007585 {gci_relation="part_of", gci_filler="NCBITaxon:8459", notes="cloacal bursa"} ! respiratory gaseous exchange by respiratory system relationship: capable_of_part_of GO:0031413 {gci_relation="part_of", gci_filler="NCBITaxon:8464", source="PMID:11479904"} ! regulation of buoyancy @@ -315960,6 +329178,8 @@ id: UBERON:0011511 name: iliococcygeus muscle def: "The Iliococcygeus arises from the ischial spine and from the posterior part of the tendinous arch of the obturator fascia, and is attached to the coccyx and anococcygeal raphC); it is usually thin, and may fail entirely, or be largely replaced by fibrous tissue. It is part of the levator ani group of muscles. An accessory slip at its posterior part is sometimes named the Iliosacralis." [Wikipedia:Iliococcygeus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "iliococcygeal" RELATED [Wikipedia:Iliococcygeus_muscle] synonym: "iliococcygei" RELATED [Wikipedia:Iliococcygeus_muscle] synonym: "iliococcygeus" EXACT [FMA:19092] @@ -315981,6 +329201,8 @@ id: UBERON:0011512 name: puborectalis muscle def: "The fibers which form a sling for the rectum are named the Puborectalis or Sphincter recti. They arise from the lower part of the symphysis pubis, and from the superior fascia of the urogenital diaphragm. They meet with the corresponding fibers of the opposite side around the lower part of the rectum, and form for it a strong sling. Relaxation reduces the angle between rectum and anus, allowing defecation in conjunction with relaxation of the internal and external sphincters. Puborectalis is part of the levator ani group of muscles." [Wikipedia:Puborectalis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "puborectalis" EXACT [FMA:19091] synonym: "puborectalis" RELATED [Wikipedia:Puborectalis_muscle] synonym: "sphincter recti" RELATED [Wikipedia:Puborectalis_muscle] @@ -315997,6 +329219,8 @@ id: UBERON:0011528 name: pubococcygeus muscle def: "The pubococcygeus muscle or PC muscle is a hammock-like muscle, found in both sexes, that stretches from the pubic bone to the coccyx (tail bone) forming the floor of the pelvic cavity and supporting the pelvic organs. It is part of the levator ani group of muscles." [Wikipedia:Pubococcygeus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "coccygeus muscle" RELATED [Wikipedia:Pubococcygeus_muscle] synonym: "kegel muscle" RELATED [Wikipedia:Pubococcygeus_muscle] synonym: "levator ani-pubococcygeus" RELATED [Wikipedia:Pubococcygeus_muscle] @@ -316022,6 +329246,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011531 name: male pubococcygeus muscle def: "A pubococcygeus muscle that is part of a male organism." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "levator prostate" EXACT [] synonym: "levator prostate muscle" EXACT [] synonym: "musculus levator prostatae" EXACT OMO:0003011 [] @@ -316036,6 +329262,8 @@ id: UBERON:0011532 name: female pubococcygeus muscle def: "Pubovaginalis in the female is the equivalent of levator prostatae in the male." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "pubovaginalis" EXACT [FMA:19090] synonym: "pubovaginalis muscle" EXACT [] xref: SCTID:208282000 @@ -316049,6 +329277,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011533 name: abductor pollicis, radioulna-prepollox def: "Originates on the distal radioulna and inserts on the palmar prepollex." [AAO:0010805] +subset: human_subset +subset: mouse_subset synonym: "m. abductor pollicis" RELATED [AAO:0010805] xref: AAO:0010805 is_a: UBERON:0003662 ! forelimb muscle @@ -316062,6 +329292,8 @@ relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0011534 name: abductor pollicis muscle +subset: human_subset +subset: mouse_subset xref: SCTID:368422008 is_a: UBERON:0003662 ! forelimb muscle is_a: UBERON:0006845 ! abductor muscle @@ -316071,6 +329303,8 @@ relationship: part_of UBERON:0002102 ! forelimb id: UBERON:0011535 name: chondroglossus muscle def: "The Chondroglossus is sometimes described as a part of the Hyoglossus, but is separated from it by fibers of the Genioglossus, which pass to the side of the pharynx. It is about 2 cm. long, and arises from the medial side and base of the lesser cornu and contiguous portion of the body of the hyoid bone, and passes directly upward to blend with the intrinsic muscular fibers of the tongue, between the Hyoglossus and Genioglossus." [Wikipedia:Chondroglossus] +subset: human_subset +subset: mouse_subset synonym: "chondroglossal" EXACT [FMA:46700] synonym: "chondroglossal muscle" RELATED [Wikipedia:Chondroglossus] synonym: "chondroglossus" EXACT [FMA:46700] @@ -316085,6 +329319,8 @@ relationship: part_of UBERON:0001572 {source="FMA"} ! hyoglossus muscle id: UBERON:0011564 name: adductor pollicis muscle of prepollex def: "Originates from the distal carpal 5-4-3 and inserts on the palmar prepollex." [AAO:0010811] +subset: human_subset +subset: mouse_subset synonym: "m. adductor pollicis" RELATED [AAO:0010811] xref: AAO:0010811 is_a: UBERON:0011145 ! adductor muscle @@ -316093,6 +329329,8 @@ relationship: has_muscle_insertion UBERON:0005880 ! prepollex [Term] id: UBERON:0011565 name: lumen of gastrointestinal system +subset: human_subset +subset: mouse_subset synonym: "cavity of digestive tract" EXACT [] synonym: "cavity of gastrointestinal tract" EXACT [] synonym: "gastrointestinal tract lumen" EXACT [FMA:54364] @@ -316106,6 +329344,8 @@ relationship: part_of UBERON:0001007 ! digestive system id: UBERON:0011566 name: lumen of esophagus def: "An anatomical cavity that is part of a esophagus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cavity of eosophagus" EXACT [] synonym: "cavity of esophagus" EXACT [FMA:9398] @@ -316129,6 +329369,8 @@ relationship: part_of UBERON:0011565 {source="FMA"} ! lumen of gastrointestinal id: UBERON:0011574 name: mesonephric duct lumen def: "A tube lumen that is part of a mesonephric duct." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cavity of nephric duct" RELATED [] synonym: "nephric duct lumen" EXACT [EHDAA2:0001244] xref: EHDAA2:0001244 @@ -316143,6 +329385,8 @@ id: UBERON:0011575 name: styloid process of ulna def: "The styloid process of the ulna projects from the medial and back part of the bone; it descends a little lower than the head, and its rounded end affords attachment to the ulnar collateral ligament of the wrist[WP,unvetted]." [Wikipedia:Ulnar_styloid_process] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "processus styloideus ulnae" EXACT OMO:0003011 [FMA:TA, Wikipedia:Ulnar_styloid_process] synonym: "ulnar styloid process" EXACT [FMA:23628] @@ -316159,6 +329403,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011576 name: supraorbital ridge def: "The superior half of the orbital rim, which constitutes the curved superior border of the orbital opening, formed by the frontal bone." [http://www.medilexicon.com/medicaldictionary.php?t=52809] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "arcus superciliaris" RELATED OMO:0003011 [Wikipedia:Supraorbital_ridge] synonym: "eyebrow bone" RELATED [Wikipedia:Supraorbital_ridge] @@ -316202,6 +329448,8 @@ property_value: taxon_notes "Neanderthals have a Supraorbital torus, a prominent id: UBERON:0011577 name: flexural organ def: "A portion of tissue that is the most anterior portion of the notochord. The flexural organ secretes Reissner's fiber-related proteins, including F-spondin." [https://sourceforge.net/tracker/?group_id=76834&atid=994726, ZFA:0007071] +subset: human_subset +subset: mouse_subset xref: ZFA:0007071 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure @@ -316218,6 +329466,7 @@ id: UBERON:0011579 name: venom gland def: "A gland that secretes venom." [https://orcid.org/0000-0002-6601-2165] subset: functional_classification +subset: mouse_subset xref: SCTID:362181001 is_a: UBERON:0002365 ! exocrine gland intersection_of: UBERON:0002365 ! exocrine gland @@ -316238,6 +329487,8 @@ relationship: produces UBERON:0007113 ! venom [Term] id: UBERON:0011581 name: platypus calcaneus spur +subset: human_subset +subset: mouse_subset synonym: "ankle spur" RELATED [] synonym: "calcaneus spur" RELATED [] synonym: "hind-leg spur" RELATED [] @@ -316252,6 +329503,8 @@ id: UBERON:0011582 name: paired limb/fin skeleton def: "The collection of all skeletal elements in an individual limb or fin." [https://orcid.org/0000-0002-6601-2165] subset: homology_grouping +subset: human_subset +subset: mouse_subset synonym: "limb/fin skeleton" EXACT [VSAO:0000301] synonym: "skeletal parts of limb/fin" EXACT [] synonym: "skeleton of limb/fin" EXACT [] @@ -316270,6 +329523,8 @@ property_value: external_definition "Skeletal subdivision that is part of the pa id: UBERON:0011583 name: stylopodial skeleton def: "Proximal element of a free limb skeleton consisting of the femur and humerus in the forelimb stylopodium and hindlimb stylopodium respectively[VSAO, modified]." [VSAO:0005007] +subset: human_subset +subset: mouse_subset synonym: "mesomere 1" RELATED HOMOLOGY [ISBN:0226313409] synonym: "propodial skeleton" RELATED [] synonym: "propodium" RELATED [VSAO:0005007] @@ -316294,6 +329549,8 @@ property_value: has_relational_adjective "stylopodial" xsd:string id: UBERON:0011584 name: zeugopodial skeleton def: "Section of the forelimb skeleton located between the stylopodium and the autopodium." [VSAO:0005010] +subset: human_subset +subset: mouse_subset synonym: "epipodial skeleton" EXACT [] synonym: "epipodium" RELATED [VSAO:0005010] synonym: "mesomere 2" RELATED HOMOLOGY [ISBN:0226313409] @@ -316318,6 +329575,8 @@ property_value: has_relational_adjective "zygopodial" xsd:string id: UBERON:0011585 name: cell condensation def: "Anatomical structure that is an aggregation of similar cells from which cartilages and bones form, and from which chondrogenesis and osteogenesis are initiated during repair and/or regeneration. (Hall and Miyake 1995)." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000006] +subset: human_subset +subset: mouse_subset xref: VSAO:0000006 xref: XAO:0004021 is_a: UBERON:0000061 {source="VSAO"} ! anatomical structure @@ -316335,6 +329594,8 @@ consider: VSAO:0000021 id: UBERON:0011587 name: pre-dentine def: "Odontogenic tissue that is collagen-rich and characteristic of vertebrate teeth and tooth-like structures (e.g., odontodes) deposited by preodontoblasts and odontoblasts that are typically excluded from the matrix." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000071] +subset: human_subset +subset: mouse_subset synonym: "pre-dentine tissue" EXACT [VSAO:curator] synonym: "predentin" EXACT [PMCID:PMC3360947] synonym: "predentine tissue" EXACT [VSAO:curator] @@ -316350,6 +329611,8 @@ relationship: produced_by CL:0000060 {source="text definition"} ! odontoblast id: UBERON:0011588 name: pre-enamel def: "Odontogenic tissue that is avascular non-mineralized matrix that is deposited by preameloblast and ameloblasts that are excluded from the matrix." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000066] +subset: human_subset +subset: mouse_subset synonym: "pre-enamel tissue" EXACT [VSAO:curator] synonym: "preenamel tissue" EXACT [VSAO:curator] xref: VSAO:0000066 @@ -316361,6 +329624,8 @@ relationship: produced_by CL:0000059 ! ameloblast id: UBERON:0011589 name: non-mineralized cartilage tissue def: "Cartilage tissue that is not mineralized." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000089] +subset: human_subset +subset: mouse_subset xref: VSAO:0000089 xref: XAO:0004044 is_a: UBERON:0002418 {source="VSAO"} ! cartilage tissue @@ -316370,6 +329635,8 @@ property_value: editor_note "add developmental relationships; add disjointness a id: UBERON:0011590 name: commissure of diencephalon def: "A commissure that is part of a diencephalon." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "diencephalon commissure" EXACT [FMA:62445] xref: FMA:62445 is_a: UBERON:0005970 ! brain commissure @@ -316382,6 +329649,8 @@ relationship: part_of UBERON:0001894 ! diencephalon id: UBERON:0011591 name: tract of diencephalon def: "An axon tract that is part of a diencephalon." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "diencephalon tract" EXACT [FMA:62447] xref: FMA:62447 is_a: UBERON:0007702 ! tract of brain @@ -316392,6 +329661,8 @@ relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0011592 name: future upper lip +subset: human_subset +subset: mouse_subset synonym: "upper jaw future lip" EXACT [EHDAA2:0002120] xref: EHDAA2:0002120 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium @@ -316404,6 +329675,8 @@ relationship: part_of UBERON:0001709 {source="EHDAA2"} ! upper jaw region id: UBERON:0011593 name: maxillary tooth def: "A tooth that is attached to a maxilla[TAO,modified]." [TAO:0001627] +subset: human_subset +subset: mouse_subset synonym: "maxillary teeth" EXACT OMO:0003004 [AAO:0000287] xref: AAO:0000287 xref: FMA:321646 @@ -316421,6 +329694,8 @@ property_value: external_definition "Tooth that is attached to the maxilla.[TAO] id: UBERON:0011594 name: dentary tooth def: "Tooth that is attached to a dentary/mandible[TAO,modified]." [TAO:0001628] +subset: human_subset +subset: mouse_subset synonym: "mandibular teeth" RELATED OMO:0003004 [AAO:0000641] synonym: "mandibular tooth" RELATED [] synonym: "tooth of dentary" RELATED [] @@ -316441,6 +329716,8 @@ property_value: external_definition "Tooth that is attached to the dentary.[TAO] id: UBERON:0011595 name: jaw region def: "A subdivision of the head that corresponds to the jaw skeleton, containing both soft tissue, skeleton and teeth (when present). The jaw region is divided into upper and lower regions." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: EMAPA:32905 xref: NCIT:C114916 is_a: UBERON:0000475 ! organism subdivision @@ -316455,6 +329732,8 @@ property_value: seeAlso "http://eol.org/collections/11578" xsd:anyURI [Term] id: UBERON:0011596 name: future lower lip +subset: human_subset +subset: mouse_subset synonym: "lower jaw future lip" EXACT [EHDAA2:0001020] xref: EHDAA2:0001020 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium @@ -316467,6 +329746,8 @@ id: UBERON:0011597 name: bone of upper jaw def: "Any bone that is part of the upper jaw skeleton. This includes (when present): the maxilla, the quadrate (in some species)." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "upper jaw bone" EXACT [] is_a: UBERON:0012360 ! bone of jaw intersection_of: UBERON:0001474 ! bone element @@ -316478,6 +329759,8 @@ property_value: editor_note "Do not manually classify under here - bones are aut [Term] id: UBERON:0011598 name: coronoid bone +subset: human_subset +subset: mouse_subset synonym: "coronoid process" BROAD [TAO:0001673] xref: AAO:0000103 xref: TAO:0001673 @@ -316490,6 +329773,8 @@ relationship: part_of UBERON:0003278 {source="AAO"} ! skeleton of lower jaw id: UBERON:0011599 name: lenticular process of incus bone def: "The long ventral process of the incus bone which articulates with the stapes." [http://palaeos.com/vertebrates/glossary/glossaryJL.html] +subset: human_subset +subset: mouse_subset synonym: "incus crus longum" EXACT [http://palaeos.com] synonym: "lenticular process" BROAD [] synonym: "lenticular process of incus" EXACT [FMA:52775] @@ -316509,6 +329794,8 @@ property_value: taxon_notes "the lenticular process may be homologous to the sha id: UBERON:0011601 name: gingiva of upper jaw def: "A gingiva that is part of a upper jaw region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "gum of maxilla" EXACT [] synonym: "gum of upper jaw" EXACT [EMAPA:18970] @@ -316530,6 +329817,8 @@ relationship: part_of UBERON:0001709 ! upper jaw region id: UBERON:0011602 name: gingiva of lower jaw def: "A gingiva that is part of a lower jaw region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "gum of lower jaw" EXACT [EMAPA:18967] synonym: "gum of mandible" EXACT [] @@ -316552,6 +329841,8 @@ relationship: part_of UBERON:0001710 ! lower jaw region id: UBERON:0011603 name: coronoid tooth def: "Tooth that is attached to a coronoid bone." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "coronoid teeth" EXACT OMO:0003004 [AAO:0000104] xref: AAO:0000104 is_a: UBERON:0003268 ! tooth of lower jaw @@ -316593,6 +329884,8 @@ id: UBERON:0011606 name: hyomandibular bone def: "Replacement bone that is bilaterally paired and (in teleosts) articulates with the neurocranium dorsally and the opercle posteriorly[TAO,modified]." [TAO:0000672, Wikipedia:Hyomandibula] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "hyomandibula" BROAD [TAO:0000672] synonym: "hyomandibular" BROAD [TAO:0000672, Wikipedia:Hyomandibula] xref: EFO:0003556 @@ -316618,6 +329911,8 @@ id: UBERON:0011607 name: hyomandibular cartilage def: "Cartilage form of the hyomandibular element." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "hyosymplectic cartilage" EXACT [ZFA:0001422] synonym: "symplectic cartilage" EXACT [TAO:0001422] xref: EFO:0003686 @@ -316636,6 +329931,8 @@ property_value: taxon_notes "The stapes is homologous to the hyomandibula. In th id: UBERON:0011608 name: hyomandibular element def: "The upper paired deep bone or cartilage of the hyoid region, sometimes taking part in jaw suspension and which supports the opercle. Dorsally it articulates with the otic capsule at the hyomandibular fossa, ventrally with the quadrate and symplectic. In most Teleostei it has a foramen for the hyomandibular branch of the facial nerve (VII)." [http://en.academic.ru/dic.nsf/en_ichthyology/8715/hyomandibula] +subset: human_subset +subset: mouse_subset synonym: "epihyal" RELATED INCONSISTENT [http://palaeos.com/vertebrates/bones/gill_arches/gill_arches.html] synonym: "hyomandibula" RELATED [] synonym: "hyomandibula - stapes" EXACT [VHOG:0000688] @@ -316654,6 +329951,8 @@ property_value: homology_notes "This structure (the hyomandibular), on ontogenic [Term] id: UBERON:0011609 name: ceratohyal element +subset: human_subset +subset: mouse_subset synonym: "keratohyal element" RELATED [] is_a: UBERON:0010522 ! replacement element relationship: part_of UBERON:0011153 {source="TAO-abduced"} ! ventral hyoid arch skeleton @@ -316661,6 +329960,8 @@ relationship: part_of UBERON:0011153 {source="TAO-abduced"} ! ventral hyoid arch [Term] id: UBERON:0011610 name: ceratohyal cartilage +subset: human_subset +subset: mouse_subset xref: TAO:0001400 xref: ZFA:0001400 is_a: UBERON:0011004 {source="TAO"} ! pharyngeal arch cartilage @@ -316676,6 +329977,8 @@ property_value: external_definition "Pharyngeal arch cartilage that is bilateral [Term] id: UBERON:0011611 name: ceratohyal bone +subset: human_subset +subset: mouse_subset synonym: "anterior ceratohyal" EXACT [TAO:0000578] synonym: "anterohyal" EXACT [TAO:0000578] synonym: "anterohyals" RELATED OMO:0003004 [TAO:0000578] @@ -316709,6 +330012,8 @@ property_value: external_definition "Replacement bone that is bilaterally paired [Term] id: UBERON:0011612 name: hypohyal cartilage +subset: human_subset +subset: mouse_subset xref: TAO:0001868 is_a: UBERON:0011004 {source="TAO"} ! pharyngeal arch cartilage is_a: UBERON:0011613 ! hypohyal element @@ -316718,6 +330023,8 @@ property_value: external_definition "Pharyngeal arch cartilage that is bilateral id: UBERON:0011613 name: hypohyal element def: "The hypohyal is a ventral element of the hyoid arch which links the ceratohyal and the basihyal." [http://palaeos.com/vertebrates/bones/gill_arches/hypohyal.html] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010522 ! replacement element relationship: part_of UBERON:0011153 {source="TAO-abduced"} ! ventral hyoid arch skeleton @@ -316725,6 +330032,8 @@ relationship: part_of UBERON:0011153 {source="TAO-abduced"} ! ventral hyoid arch id: UBERON:0011614 name: basihyal element def: "Skeletal element that is median and is the anterior-most element of the ventral hyoid arch." [TAO:0001891] +subset: human_subset +subset: mouse_subset xref: TAO:0001891 is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0011153 {source="TAO"} ! ventral hyoid arch skeleton @@ -316733,6 +330042,8 @@ relationship: part_of UBERON:0011153 {source="TAO"} ! ventral hyoid arch skeleto id: UBERON:0011615 name: basihyal cartilage def: "Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch." [TAO:0001510] +subset: human_subset +subset: mouse_subset synonym: "copula 1" RELATED [TAO:0001510] xref: TAO:0001510 xref: ZFA:0001510 @@ -316746,6 +330057,8 @@ relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue id: UBERON:0011618 name: basihyal bone def: "Replacement bone that is median and is the anterior-most bone of the ventral hyoid arch." [TAO:0000316] +subset: human_subset +subset: mouse_subset synonym: "basihyoid" EXACT [TAO:0000316] synonym: "glossohyal" EXACT [TAO:0000316] xref: TAO:0000316 @@ -316762,6 +330075,8 @@ relationship: develops_from UBERON:0011615 {source="TAO"} ! basihyal cartilage id: UBERON:0011619 name: stylohyoid bone def: "This is the paired bone that makes up the segment of the mammalian hyoid apparatus connecting the epihyoids with the skull via the tympanohyoid cartilages on each side. Ventrally, it defines the medial and lateral compartments of the guttural pouch in the horse." [MURDOCH:1758] +subset: human_subset +subset: mouse_subset xref: SCTID:370715004 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0010272 ! hyoid apparatus @@ -316771,6 +330086,8 @@ property_value: taxon_notes "The stylohyoid bone is one of the four bones ( styl id: UBERON:0011620 name: basihyal lingual process def: "A projection on the basihyal bone. Laterally the lingual process is compressed. It has a blunt pointed free end, and its lateral surfaces are slightly concave. The dorsal border is thin and irregular, and the ventral border is thick and rough. In the living animal the lingual process is embedded within the root of the tongue." [MURDOCH:1080] +subset: human_subset +subset: mouse_subset synonym: "lingual process of basihyoid" EXACT [] synonym: "lingual process of basihyoid bone" EXACT [] synonym: "lingual process of hyoid" RELATED [] @@ -316781,6 +330098,8 @@ relationship: part_of UBERON:0011618 ! basihyal bone id: UBERON:0011621 name: thyrohyoid cartilage def: "This small finger of cartilage completes the connection between the thyrohyoid bone and the thyroid cartilage (rostral cornu)." [MURDOCH:2033] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: connects UBERON:0011622 ! thyrohyoid bone relationship: connects UBERON:0011623 ! horn of thyroid cartilage @@ -316790,6 +330109,8 @@ relationship: part_of UBERON:0010272 ! hyoid apparatus id: UBERON:0011622 name: thyrohyoid bone def: "Is a laterally bowed, sagittally compressed, slender element that extends from dorsocaudally from the lateral parts of the basihyoid. It connects the basiohyoid with the rostral corner of the thyroid cartlilage of the larynx." [MURDOCH:1951] +subset: human_subset +subset: mouse_subset xref: SCTID:370708007 is_a: UBERON:0002513 ! endochondral bone relationship: connects UBERON:0011618 ! basihyal bone @@ -316799,6 +330120,8 @@ relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] id: UBERON:0011623 name: horn of thyroid cartilage +subset: human_subset +subset: mouse_subset synonym: "cornu of thyroid cartilage" EXACT [FMA:55300] synonym: "thyroid cartilage horn" EXACT [FMA:55300] xref: FMA:55300 @@ -316811,6 +330134,8 @@ relationship: part_of UBERON:0001738 ! thyroid cartilage id: UBERON:0011624 name: superior horn of thyroid cartilage def: "The superior horn of thyroid cartilage is long and narrow, directed upward, backward, and medialward, and ends in a conical extremity, which gives attachment to the lateral hyothyroid ligament." [Wikipedia:Superior_horn_of_thyroid_cartilage] +subset: human_subset +subset: mouse_subset synonym: "cornu superius (cartilago thyroidea)" EXACT [FMA:55294] synonym: "cornu superius cartilaginis thyroideae" EXACT OMO:0003011 [] synonym: "superior cornu of thyroid cartilage" EXACT [FMA:55294] @@ -316823,6 +330148,8 @@ is_a: UBERON:0011623 {source="FMA"} ! horn of thyroid cartilage id: UBERON:0011625 name: inferior horn of thyroid cartilage def: "The inferior horn of thyroid cartilage is short and thick; it is directed downward, with a slight inclination forward and medialward, and presents, on the medial side of its tip, a small oval articular facet for articulation with the side of the cricoid cartilage." [Wikipedia:Inferior_horn_of_thyroid_cartilage] +subset: human_subset +subset: mouse_subset synonym: "cornu inferius (cartilago thyroidea)" EXACT [FMA:55297] synonym: "cornu inferius cartilaginis thyroidea" EXACT OMO:0003011 [FMA:55297, FMA:TA] synonym: "cornu inferius cartilaginis thyroideae" EXACT OMO:0003011 [] @@ -316835,6 +330162,8 @@ is_a: UBERON:0011623 {source="FMA"} ! horn of thyroid cartilage id: UBERON:0011626 name: tympanohyoid cartilage def: "The terminal segment in the chain of skeletal elements of the hyoid apparatus. One of a pair of rods of cartilage that connect the hyoid bone to the styloid process of the petrous part of the temporal bone." [http://medical-dictionary.thefreedictionary.com/tympanohyoid] +subset: human_subset +subset: mouse_subset xref: SCTID:370702008 is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: connects UBERON:0001685 ! hyoid bone @@ -316845,6 +330174,8 @@ relationship: part_of UBERON:0010272 ! hyoid apparatus id: UBERON:0011627 name: orbital part of frontal bone def: "A zone of the frontal bone that consists of two thin triangular plates, the orbital plates, which form the vaults of the orbits, and are separated from one another by a median gap, the ethmoidal notch." [Wikipedia:Orbital_part_of_frontal_bone] +subset: human_subset +subset: mouse_subset synonym: "pars orbitalis" RELATED [Wikipedia:Orbital_part_of_frontal_bone] synonym: "pars orbitalis (os frontale)" EXACT [FMA:52849] synonym: "pars orbitalis ossis frontalis" EXACT OMO:0003011 [Wikipedia:Orbital_part_of_frontal_bone] @@ -316860,6 +330191,8 @@ relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium [Term] id: UBERON:0011628 name: early premaxilla +subset: human_subset +subset: mouse_subset synonym: "future premaxilla" EXACT [] xref: EHDAA2:0001495 is_a: UBERON:0007842 {source="EHDAA2"} ! membrane bone @@ -316869,10 +330202,13 @@ relationship: develops_from UBERON:0010334 {source="EHDAA2"} ! maxillary process relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003113 {source="ISBN:0073040584"} ! dermatocranium relationship: part_of UBERON:0003277 {source="EHDAA2"} ! skeleton of upper jaw +relationship: part_of UBERON:8450003 ! embryonic craniocervical region [Term] id: UBERON:0011629 name: supratemporal bone +subset: human_subset +subset: mouse_subset synonym: "supratemporal" EXACT [] is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0008907 ! dermal bone @@ -316881,6 +330217,8 @@ relationship: part_of UBERON:0003113 {notes="temporal series", source="ISBN:0073 [Term] id: UBERON:0011630 name: intertemporal bone +subset: human_subset +subset: mouse_subset synonym: "intertemporal" EXACT [] is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0008907 ! dermal bone @@ -316889,6 +330227,8 @@ relationship: part_of UBERON:0003113 {notes="temporal series", source="ISBN:0073 [Term] id: UBERON:0011631 name: tabular bone +subset: human_subset +subset: mouse_subset synonym: "tabular" EXACT [] is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0008907 ! dermal bone @@ -316899,6 +330239,8 @@ id: UBERON:0011634 name: ectopterygoid bone def: "A palatal bone which -- like many palatal bones -- may originally have developed as a dermal bone replacing part of the palatoquadrate, the primitive upper jaw. Like the palatine (also called dermopalatine), the ectopterygoid replaces the middle part of the autopalatine. It may be serially homologous with the palatine(s), but is somewhat specialized, being the last (most posterior in palatal view) of the series and bordering the fossa for the jaw muscles. In a typical tetrapod it abuts the palatine anteriorly, the maxilla laterally, the pterygoid or the fossa mandubuaris medially, and the fossa posteriorly." [http://palaeos.com/vertebrates/glossary/glossaryE.html] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "ectopterygoid" EXACT [TAO:0000656] synonym: "ectopterygoids" RELATED OMO:0003004 [ZFA:0000656] xref: EFO:0003552 @@ -316918,6 +330260,8 @@ property_value: external_ontology_notes "taken from TAO but is present in tetrap id: UBERON:0011635 name: splenial bone def: "The splenial is a small bone in the lower jaw of reptiles, amphibians and birds, usually located on the lingual side (closest to the tongue) between the angular and suprangular." [Wikipedia:Splenial] +subset: human_subset +subset: mouse_subset synonym: "splenial" EXACT [AAO:0000573] xref: AAO:0000573 xref: http://palaeos.com/vertebrates/bones/dermal/images/Dentary1.gif @@ -316931,6 +330275,8 @@ relationship: part_of UBERON:0003278 {source="AAO"} ! skeleton of lower jaw id: UBERON:0011636 name: surangular bone def: "The surangular is a dermal bone of the lower jaw. It typically covers much of the dorsal and lateral surface of the posterior jaw and variably extends onto the medial (inside) surface. The surangular articulates with and supports the articular, which forms the jaw joint with the quadrate in most vertebrates, and is in turn supported by the angular. More distally, the surangular bridges the mandibular fenestra, if one is present. It may also bear a raised dorsal coronoid process, an important attachment site for the mandibular adductors. At its distal (or rostral) end, the surangular meets the dentary, the main tooth-bearing bone of the lower jaw in most vertebrates." [http://palaeos.com/vertebrates/bones/dermal/mandibular-surangular.html] +subset: human_subset +subset: mouse_subset synonym: "supra-angular" RELATED [https://github.com/obophenotype/uberon/issues/164] synonym: "supra-angular bone" RELATED [https://github.com/obophenotype/uberon/issues/164] synonym: "supraangular" RELATED [https://github.com/obophenotype/uberon/issues/164] @@ -316956,6 +330302,8 @@ property_value: taxon_notes "Nevertheless, it is not completely clear that this[ id: UBERON:0011637 name: prearticular bone def: "Osseous element of intramembranous origin that extends along the lingual margin of Meckel's cartilage." [AAO:0000458] +subset: human_subset +subset: mouse_subset synonym: "prearticular" EXACT [AAO:0000458] xref: AAO:0000458 xref: http://palaeos.com/vertebrates/bones/dermal/images/Dentary1.gif @@ -316967,6 +330315,8 @@ relationship: part_of UBERON:0003278 {source="AAO"} ! skeleton of lower jaw [Term] id: UBERON:0011638 name: pharyngeal arch 8 +subset: human_subset +subset: mouse_subset synonym: "branchial arch 6" RELATED [] synonym: "gill arch 6" EXACT [] synonym: "visceral arch 8" EXACT [] @@ -316977,6 +330327,8 @@ property_value: pharyngeal_arch_number "8" xsd:nonNegativeInteger id: UBERON:0011639 name: frontoparietal bone def: "An anuran dermal bone that usually is paired and roofs the braincase." [AAO:0000207] +subset: human_subset +subset: mouse_subset synonym: "fronto-parietaux" RELATED [AAO:0000207] synonym: "frontoparietal" EXACT [AAO:0000207] synonym: "os fronto-parietale" RELATED [AAO:0000207] @@ -316984,14 +330336,16 @@ synonym: "parietaux" RELATED [AAO:0000207] synonym: "parietofrontal" RELATED [AAO:0000207] xref: AAO:0000207 is_a: UBERON:0008907 {source="AAO"} ! dermal bone -relationship: derived_from_ancestral_fusion_of UBERON:0000209 ! tetrapod frontal bone -relationship: derived_from_ancestral_fusion_of UBERON:0000210 ! tetrapod parietal bone +relationship: has_fused_element UBERON:0000209 ! tetrapod frontal bone +relationship: has_fused_element UBERON:0000210 ! tetrapod parietal bone relationship: part_of UBERON:0003113 {notes="orbital series", source="ISBN:0073040584"} ! dermatocranium [Term] id: UBERON:0011640 name: palatoglossal arch def: "A fold that lies between the mouth and pharynx and marks the posterior border of the mouth." [ISBN:0073040584, Wikipedia:Palatoglossal_arch] +subset: human_subset +subset: mouse_subset synonym: "anterior pillar of fauces" EXACT [FMA:55024] synonym: "arcus glossopalatinus" EXACT [Wikipedia:Palatoglossal_arch] synonym: "arcus palatoglossus" EXACT [Wikipedia:Palatoglossal_arch] @@ -317009,6 +330363,8 @@ relationship: part_of UBERON:0001555 ! digestive tract id: UBERON:0011641 name: odontogenic mesenchyme of molar def: "An odontogenic papilla that is part of a molar tooth [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "molar mesenchyme" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "odontogenic mesenchyme of molar tooth" EXACT [OBOL:automatic] xref: EMAPA:32881 @@ -317022,6 +330378,8 @@ relationship: part_of UBERON:0003655 ! molar tooth id: UBERON:0011642 name: oral epithelium from ectoderm def: "An epithelium that develops_from a ectoderm and is part of a oral epithelium." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004137 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0002424 ! oral epithelium @@ -317038,6 +330396,8 @@ id: UBERON:0011643 name: puboischiofemoralis internus muscle alt_id: UBERON:0014843 def: "A single large dorsal limb rotator muscle in lower tetrapods that runs from the lumber region and girdle to the femur." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "puboischiofemoralis internus" EXACT [] is_a: UBERON:0004518 ! muscle of vertebral column is_a: UBERON:0014842 ! puboischiofemoralis muscle @@ -317050,6 +330410,8 @@ id: UBERON:0011644 name: puboischiofemoralis externus muscle alt_id: UBERON:0014844 def: "A single large ventral muscle in lower tetrapods that runs from the pubis and ischium to the femur." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "puboischiofemoralis externus" EXACT [] is_a: UBERON:0014842 ! puboischiofemoralis muscle relationship: has_muscle_insertion UBERON:0000981 {source="ISBN:0073040584"} ! femur @@ -317061,6 +330423,8 @@ property_value: taxon_notes "obturator externus and quadratus femoris are deriva id: UBERON:0011645 name: iliofemoralis muscle def: "Limb extensor that runs from ilium to femur." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "iliofemoralis" EXACT [] is_a: UBERON:0001325 ! muscle of pelvis intersection_of: UBERON:0001325 ! muscle of pelvis @@ -317081,6 +330445,8 @@ relationship: part_of UBERON:0010856 ! patagium [Term] id: UBERON:0011647 name: depressor mandibulae muscle +subset: human_subset +subset: mouse_subset synonym: "depressor labi mandibularis" EXACT [] synonym: "depressor labi mandibularis muscle" EXACT [] synonym: "depressor mandibulae" EXACT [AAO:0010715] @@ -317096,6 +330462,8 @@ property_value: taxon_notes "Homolog of levator operculi and epihyoidean - or in id: UBERON:0011648 name: jaw muscle subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "mandibular muscle" EXACT [TAO:0000236] synonym: "mandibular muscles" EXACT OMO:0003004 [TAO:0000236] @@ -317111,6 +330479,8 @@ relationship: capable_of_part_of GO:0071626 ! mastication id: UBERON:0011649 name: levator operculi def: "Hyoid muscle that originates at the ventrolateral margin of the pterotic and inserts in the dorsomesial edge of the opercle. The levator operculi is responible for jaw depression, its force of contraction is transmitted through the opercular series and the interoperculo-mandibular ligament to the lower jaw." [ZFA:0000537] +subset: human_subset +subset: mouse_subset synonym: "levator operculae" EXACT [ZFA:0000537] synonym: "levator operculi muscle" EXACT [] xref: TAO:0000537 @@ -317135,6 +330505,8 @@ property_value: homology_notes "The depressor mandibulae of tetrapods, which ope id: UBERON:0011651 name: ventral head of rib def: "Ventral head of a bicapitate rib. It articulates with the parapophysis[AAO]." [AAO:0000723] +subset: human_subset +subset: mouse_subset synonym: "capitulum" NARROW [] synonym: "capitulum of costa" EXACT [] synonym: "capitulum of rib" EXACT [AAO:0000723] @@ -317150,6 +330522,8 @@ property_value: taxon_notes "Ribs of primitive tetrapods are bicipital (having t id: UBERON:0011652 name: dorsal head of rib def: "Dorsal head of a bicapitate rib. It articulates with the diapophysis[AAO]." [AAO:0000722] +subset: human_subset +subset: mouse_subset synonym: "tuberculum" BROAD [AAO:0000722] synonym: "tuberculum of rib" EXACT [] xref: AAO:0000722 @@ -317165,6 +330539,8 @@ property_value: terminology_notes "sometimes called the tuberculum, but not to b id: UBERON:0011653 name: diapophysis of neural arch def: "Paired processes that arise near the midpoint of the neural arch lamina, for the attachment of the tuberculum of two-headed ribs. Also called transverse processes. In anurans, the term diapophysis is used in reference to the modified transverse processes of the sacral vertebra elaborated for support of the pelvic girdle." [AAO:0000706] +subset: human_subset +subset: mouse_subset synonym: "diapophysis" BROAD [AAO:0000706] synonym: "transverse process" BROAD [AAO:0000706] xref: AAO:0000706 @@ -317216,7 +330592,7 @@ name: entoplastron def: "A median bone at the anterior margin of the plastron." [ISBN:0073040584] synonym: "interclavicle" RELATED [ISBN:0073040584] is_a: UBERON:0011657 ! dermal element of plastron -relationship: derived_from_ancestral_fusion_of UBERON:0001105 ! clavicle bone +relationship: has_fused_element UBERON:0001105 ! clavicle bone relationship: intersects_midsagittal_plane_of UBERON:0008276 ! plastron [Term] @@ -317343,6 +330719,8 @@ property_value: editor_note "consider making subclasses as per dermal elements" id: UBERON:0011675 name: perichordal ring def: "Enlarged section of perichordal tube that is arranged serially but out of phase with segmental musculature." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset xref: AAO:0000738 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure @@ -317353,6 +330731,8 @@ relationship: part_of UBERON:0007862 {source="AAO"} ! perichordal tissue id: UBERON:0011676 name: subdivision of organism along main body axis def: "A major subdivision of an organism that divides an organism along its main body axis (typically anterio-posterior axis). In vertebrates, this is based on the vertebral column." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "axial subdivision of organism" EXACT [] synonym: "body segment" RELATED [] @@ -317365,6 +330745,8 @@ property_value: editor_note "Ideally this would be disjoint with analagous class id: UBERON:0011677 name: trunk vertebra def: "A vertebra in the trunk region. For tetrapods, includes lumbar and thoracic vertebrae. Excludes caudal/coccygeal vertebra, which are located posteriorly. In tetrapods this includes thoracic, lumbar and sacral vertebrae, and excludes the cervical vertebrae, which are located anteriorly." [UBERONREF:0000006] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "presacral vertebra" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "thoracolumbar vertebra" EXACT [] @@ -317380,6 +330762,8 @@ relationship: part_of UBERON:0009568 ! trunk region of vertebral column id: UBERON:0011678 name: hindlimb intermedium bone def: "A proximal tarsal bone that articulates with the fibula." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "hidlimb intermedium" EXACT [] synonym: "intermedium" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "intermedium (hind)" EXACT [AAO:0000923] @@ -317393,6 +330777,8 @@ property_value: taxon_notes "The amphibian intermedium forms part of the astraga id: UBERON:0011679 name: proximal tarsal bone def: "A tarsal bone that connected_to a hindlimb zeugopod skeleton." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0014395 ! proximal mesopodial bone is_a: UBERON:0015081 ! proximal tarsal endochondral element @@ -317406,6 +330792,8 @@ id: UBERON:0011683 name: adductor mandibulae def: "An adductor muscle that acts on the jaw. In some species, this is subdivided into segments based on attachment." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/266] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "adductor mandibulae complex" RELATED INCONSISTENT [EFO:0000227] synonym: "dorsal adductor mandibulae" EXACT [ZFA:0007049] synonym: "levator mandibulae" RELATED [] @@ -317427,6 +330815,8 @@ property_value: taxon_notes "In teleosts, the complex is composed of several der id: UBERON:0011684 name: levator palatoquadrati def: "A muscle derivative of the mandibular levator that runs from the chondrocranium to the palatoquadrate cartilage. Found in sharks." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011648 {source="ISBN:0073040584"} ! jaw muscle is_a: UBERON:0018544 ! trigeminal nerve muscle relationship: develops_from UBERON:0004362 {source="ISBN:0073040584"} ! pharyngeal arch 1 @@ -317438,6 +330828,8 @@ property_value: taxon_notes "In some fishes such as the chimera and in tetrapods id: UBERON:0011685 name: preorbitalis muscle def: "A jaw muscle arises near the orbit and tapers as it passes posteriorly to its insertion on the adductor mandibulae. Found in sharks." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "preorbitalis" EXACT [] is_a: UBERON:0011648 {source="ISBN:0073040584"} ! jaw muscle is_a: UBERON:0018544 ! trigeminal nerve muscle @@ -317449,6 +330841,8 @@ relationship: present_in_taxon NCBITaxon:119203 ! Selachii [Term] id: UBERON:0011686 name: spiracularis muscle +subset: human_subset +subset: mouse_subset synonym: "spiracularis" EXACT [] is_a: UBERON:0011648 {source="ISBN:0073040584"} ! jaw muscle is_a: UBERON:0018544 ! trigeminal nerve muscle @@ -317459,6 +330853,8 @@ relationship: present_in_taxon NCBITaxon:7777 {source="Kardong"} ! Chondrichthye [Term] id: UBERON:0011687 name: levator hyomandibulae muscle +subset: human_subset +subset: mouse_subset synonym: "levator hyomandibulae" EXACT [] is_a: UBERON:0005493 ! hyoid muscle relationship: develops_from UBERON:0003066 {source="ISBN:0073040584"} ! pharyngeal arch 2 @@ -317468,6 +330864,8 @@ relationship: innervated_by UBERON:0001647 {source="ISBN:0073040584"} ! facial n id: UBERON:0011688 name: pre-enameloid def: "Odontoid tissue that is avascular non-mineralized matrix that is deposited by odontoblasts and ameloblasts that are excluded from the matrix." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000114] +subset: human_subset +subset: mouse_subset synonym: "non-mineralized enameloid tissue" EXACT [VSAO:curator] xref: VSAO:0000114 xref: XAO:0004203 @@ -317477,6 +330875,8 @@ is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue id: UBERON:0011692 name: enameloid def: "Skeletal tissue that is hypermineralized and aprismatic and deposited by a combination of ameloblasts and odontoblasts that are excluded from the matrix. Enameloid develops from pre-enameloid tissue." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000113] +subset: human_subset +subset: mouse_subset synonym: "bitypic enamel" EXACT [VSAO:curator] synonym: "durodentine" EXACT [VSAO:curator] synonym: "enameloid tissue" EXACT [VSAO:curator] @@ -317494,6 +330894,8 @@ relationship: part_of UBERON:0001091 {source="ZFA"} ! calcareous tooth [Term] id: UBERON:0011693 name: extraembryonic portion of umbilical artery +subset: human_subset +subset: mouse_subset synonym: "extraembryonic umbilical artery" EXACT [VHOG:0001157] xref: VHOG:0001157 is_a: UBERON:0000478 {source="EHDAA2-abduced"} ! extraembryonic structure @@ -317507,6 +330909,8 @@ relationship: part_of UBERON:0007807 {source="EHDAA2-abduced"} ! connecting stal id: UBERON:0011694 name: embryo portion of umbilical artery def: "Each of the two arteries arising from the hypogastric arteries of the fetus and passing throught the umbilical cord to the placenta." [VHOG:0000599] +subset: human_subset +subset: mouse_subset synonym: "embryonic umbilical artery" EXACT [VHOG:0000599] xref: VHOG:0000599 is_a: UBERON:0001637 ! artery @@ -317517,6 +330921,8 @@ property_value: external_definition "Each of the two arteries arising from the h id: UBERON:0011695 name: embryonic cardiovascular system def: "A cardiovascular system that is part of a conceptus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "conceptus cardiovascular system" EXACT [] synonym: "embryonic circulatory system" RELATED [] synonym: "fetal circulatory system" RELATED [] @@ -317531,6 +330937,8 @@ relationship: part_of UBERON:0004716 ! conceptus [Term] id: UBERON:0011696 name: left extraembryonic umbilical artery +subset: human_subset +subset: mouse_subset synonym: "extraembryonic umbilical artery left" EXACT [EHDAA2:0000937] xref: EHDAA2:0000937 is_a: UBERON:0011693 ! extraembryonic portion of umbilical artery @@ -317539,6 +330947,8 @@ relationship: connected_to UBERON:0011695 ! embryonic cardiovascular system [Term] id: UBERON:0011697 name: right extraembryonic umbilical artery +subset: human_subset +subset: mouse_subset synonym: "extraembryonic umbilical artery right" EXACT [EHDAA2:0001721] xref: EHDAA2:0001721 is_a: UBERON:0011693 ! extraembryonic portion of umbilical artery @@ -317548,6 +330958,8 @@ relationship: part_of UBERON:0007807 {source="EHDAA2"} ! connecting stalk vascul id: UBERON:0011698 name: midgut loop def: "Portion of midgut after it bends around the superior mesenteric artery." [Wikipedia:Midgut] +subset: human_subset +subset: mouse_subset xref: EMAPA:17036 xref: NCIT:C34211 xref: UMLS:C1513298 {source="ncithesaurus:Midgut_Loop"} @@ -317560,6 +330972,8 @@ relationship: part_of UBERON:0001045 {source="VHOG"} ! midgut id: UBERON:0011737 name: caudate lobe hepatic sinusoid def: "A hepatic sinusoid that is part of a caudate lobe of liver." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "liver right caudate lobe hepatic sinusoids" EXACT [EHDAA2:0001006] xref: EHDAA2:0001006 xref: EHDAA:6992 @@ -317576,6 +330990,8 @@ relationship: part_of UBERON:0001117 ! caudate lobe of liver id: UBERON:0011738 name: quadrate lobe hepatic sinusoid def: "A hepatic sinusoid that is part of a quadrate lobe of liver." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "liver right quadrate lobe hepatic sinusoids" EXACT [EHDAA2:0001013] xref: EHDAA2:0001013 xref: EHDAA:8084 @@ -317590,6 +331006,8 @@ relationship: part_of UBERON:0001116 ! quadrate lobe of liver [Term] id: UBERON:0011741 name: cardiac valve leaflet +subset: human_subset +subset: mouse_subset synonym: "valve leaflet" RELATED [MA:0003179] xref: EMAPA:35903 xref: MA:0003179 @@ -317602,6 +331020,8 @@ relationship: part_of UBERON:0000946 ! cardiac valve id: UBERON:0011742 name: aortic valve leaflet def: "A cardiac valve leaflet that is part of a aortic valve." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "aortic valve leaflets" EXACT [VHOG:0000819] xref: EMAPA:18627 @@ -317617,6 +331037,8 @@ property_value: homology_notes "Extensive conservation of valve developmental me id: UBERON:0011745 name: pulmonary valve leaflets def: "A cardiac valve leaflet that is part of a pulmonary valve." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:18629 xref: VHOG:0000820 @@ -317630,6 +331052,8 @@ property_value: homology_notes "Extensive conservation of valve developmental me id: UBERON:0011754 name: genital swelling def: "Paired structures in the embryo that represent the final stage of development of the caudal end of the external genitals before sexual differentiation. In both males and females the two swellings merge: in the female, they become the posterior labial commissure; In the male, they become the scrotum." [Wikipedia:Labioscrotal_swelling] +subset: human_subset +subset: mouse_subset synonym: "labioscrotal swelling" EXACT [] synonym: "tuberculum labioscrotale" RELATED OMO:0003011 [Wikipedia:Labioscrotal_swelling] xref: EMAPA:30074 @@ -317647,6 +331071,8 @@ property_value: editor_note "todo - add parthood relationships to tubercles" xsd id: UBERON:0011755 name: female labial swelling def: "A genital swelling that is part of a female reproductive system." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "labial primordium" RELATED [] synonym: "labial swelling" BROAD [EMAPA:18329] synonym: "labioscrotal swelling of female" EXACT [EMAPA:30423] @@ -317664,6 +331090,8 @@ relationship: part_of UBERON:0000474 ! female reproductive system id: UBERON:0011756 name: male genital swelling def: "A genital swelling that is part of a male reproductive organ." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "labioscrotal swelling of male" EXACT [EMAPA:30509] synonym: "scrotal bulge" EXACT [] synonym: "scrotal primordium" EXACT [] @@ -317678,6 +331106,8 @@ relationship: part_of UBERON:0003135 ! male reproductive organ [Term] id: UBERON:0011757 name: differentiated genital tubercle +subset: human_subset +subset: mouse_subset synonym: "phallus" RELATED [Wikipedia:Primordial_phallus] synonym: "phallus primordialis" RELATED OMO:0003011 [Wikipedia:Primordial_phallus] synonym: "primordial phallus" RELATED [Wikipedia:Primordial_phallus] @@ -317694,6 +331124,8 @@ relationship: part_of UBERON:0004176 ! external genitalia id: UBERON:0011765 name: jugular lymph sac def: "An embryonic lymph sac that forms at the junction of the future internal jugular/anterior cardinals and subclavian veins." [https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system, https://github.com/obophenotype/uberon/issues/1383, VHOG:0001000] +subset: human_subset +subset: mouse_subset xref: EMAPA:18249 xref: NCIT:C34196 xref: VHOG:0001000 @@ -317704,6 +331136,8 @@ property_value: external_definition "Lymphatic vessels develop from lymph sacs t [Term] id: UBERON:0011766 name: left recurrent laryngeal nerve +subset: human_subset +subset: mouse_subset synonym: "left recurrent laryngeal branch" EXACT [EMAPA:25350] synonym: "left recurrent laryngeal nerve" EXACT [FMA:14469] synonym: "vagus X nerve left recurrent laryngeal branch" EXACT [MA:0001107] @@ -317722,6 +331156,8 @@ property_value: taxon_notes "The left nerve is longer than the right, because it [Term] id: UBERON:0011767 name: right recurrent laryngeal nerve +subset: human_subset +subset: mouse_subset synonym: "right recurrent laryngeal branch" EXACT [EMAPA:17275] synonym: "right recurrent laryngeal nerve" EXACT [FMA:14468] synonym: "vagus X nerve right recurrent laryngeal branch" EXACT [MA:0001108] @@ -317738,6 +331174,8 @@ relationship: in_right_side_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0011768 name: pineal gland stalk +subset: human_subset +subset: mouse_subset synonym: "epiphyseal stalk" EXACT [ZFA:0001292] synonym: "habenula" RELATED [] synonym: "pineal stalk" EXACT [TAO:0001292] @@ -317759,6 +331197,8 @@ property_value: homology_notes "The epithalamus contains the epiphysis (pineal g id: UBERON:0011769 name: cartilaginous projection def: "Anatomical projection that is composed of cartilage tissue." [VSAO:wd] +subset: human_subset +subset: mouse_subset synonym: "cartilage process" EXACT [] synonym: "cartilaginous process" EXACT [] xref: FMA:284626 @@ -317771,6 +331211,8 @@ relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue id: UBERON:0011770 name: mentomeckelian def: "Paired, cylindrical, and small bones of endochondral origin that lie anteromedial to the anterior end of Meckel's cartilage. The precursors of the mentomeckelian bones are the larval infrarostral cartilages." [AAO:0000301] +subset: human_subset +subset: mouse_subset synonym: "dentale" RELATED [AAO:0000301] synonym: "pars mentalis" RELATED [AAO:0000301] xref: AAO:0000301 @@ -317791,6 +331233,8 @@ consider: AAO:0000265 id: UBERON:0011772 name: lower jaw opening def: "An anatomical space that is part of a bone of lower jaw." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: AAO:0000273 is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space @@ -317802,6 +331246,8 @@ relationship: part_of UBERON:0004768 ! bone of lower jaw id: UBERON:0011773 name: upper jaw opening def: "An anatomical space that is part of a bone of upper jaw." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: AAO:0000621 is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space @@ -317814,6 +331260,8 @@ id: UBERON:0011774 name: utriculosaccular duct def: "A duct connecting the the utricle to the saccule in the membranous labyrinth of the ear." [http://www.merriam-webster.com/medical/utriculosaccular%20duct] comment: Alternate: leads from the utricle of the internal ear to the endolymphatic duct. - http://medical-dictionary.thefreedictionary.com/utriculosaccular+duct. We assume a 3-way connection +subset: human_subset +subset: mouse_subset synonym: "Böttcher's canal" EXACT [http://en.wikipedia.org] synonym: "ductus utricosaccularis" EXACT [FMA:61243] synonym: "utricosaccular duct" EXACT [] @@ -317838,6 +331286,8 @@ relationship: part_of UBERON:0001862 {source="MP"} ! vestibular labyrinth id: UBERON:0011775 name: vagus nerve nucleus def: "A cranial nerve nucleus that is associated with a vagus nerve." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "nodosal nucleus" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "nucleus of vagal nerve" EXACT [] synonym: "nucleus of vagal X nerve" EXACT [] @@ -317860,6 +331310,8 @@ relationship: part_of UBERON:0002028 ! hindbrain id: UBERON:0011776 name: dorsal commissural nucleus of spinal cord def: "A continuous column of gray matter along the midline in the dorsal gray commissure that sends fibers to the hypogastric nerve." [PMID:758335] +subset: human_subset +subset: mouse_subset synonym: "spinal cord dorsal commissural nucleus" BROAD [MA:0001128] xref: EMAPA:37748 {source="MA:th"} xref: MA:0001128 @@ -317876,6 +331328,8 @@ id: UBERON:0011777 name: nucleus of spinal cord def: "A neural nucleus that is part of the spinal cord." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "spinal cord nucleus" EXACT [FMA:77011] xref: FMA:77011 is_a: UBERON:0000125 ! neural nucleus @@ -317886,6 +331340,8 @@ relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0011778 name: motor nucleus of vagal nerve +subset: human_subset +subset: mouse_subset synonym: "motor nucleus of X" EXACT [ZFA:0000387] synonym: "motor nucleus X" EXACT [ZFA:0000387] synonym: "nucleus motorius of nervi vagi" EXACT OMO:0003011 [ZFA:0000387] @@ -317900,6 +331356,8 @@ id: UBERON:0011779 name: nerve of head region def: "A nerve that is part of a head." [OBOL:automatic] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "cephalic nerve" RELATED [] synonym: "head nerve" RELATED [] is_a: UBERON:0001021 ! nerve @@ -318204,12 +331662,16 @@ relationship: has_member UBERON:0000022 ! feather id: UBERON:0011814 name: non-neurogenic ectodermal placode def: "Ectodermal placode that does not develop into a component of the nervous system." [http://orcid.org/0000-0002-6601-2165, PMID:11523831] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005085 {source="cjm"} ! ectodermal placode [Term] id: UBERON:0011817 name: skin appendage placode def: "An ectodermal placode that gives rise to any of the cutaneous appendages that protrude from the skin epidermis (heair, feathers, epidermal scales)." [https://github.com/obophenotype/uberon/issues/1266] +subset: human_subset +subset: mouse_subset synonym: "cutaneous appendage follicle placode" EXACT [] synonym: "skin follicle placode" EXACT [] is_a: UBERON:0006598 ! presumptive structure @@ -318224,6 +331686,8 @@ relationship: has_potential_to_develop_into UBERON:0036150 ! skin appendage foll id: UBERON:0011818 name: superficial fascia def: "Superficial fascia is found in the subcutis in most regions of the body, blending with the reticular layer of the dermis. It is present on the face, over the upper portion of the sternocleidomastoid, at the nape of the neck, and overlying the sternum. It is comprised mainly of loose areolar connective tissue and adipose and is the layer that primarily determines the shape of a body. In addition to its subcutaneous presence, this type of fascia surrounds organs and glands, neurovascular bundles, and is found at many other locations where it fills otherwise unoccupied space. It serves as a storage medium of fat and water; as a passageway for lymph, nerve and blood vessels; and as a protective padding to cushion and insulate. Superficial fascia is present, but does not contain fat, in the eyelids, ear, scrotum, penis and clitoris." [Wikipedia:Superficial_fascia] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "subcutaneous tissue" EXACT [FMA:9630] synonym: "superficial fascial layer" EXACT [] @@ -318243,6 +331707,8 @@ property_value: external_ontology_notes "we follow FMA, BTO, NCIT and WP in maki id: UBERON:0011819 name: lumen of atrioventricular canal def: "A tube lumen that is part of a atrioventricular canal." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "AVC lumen" EXACT [] synonym: "cavity of atrioventricular canal" EXACT [] synonym: "lumen of AVC" EXACT [] @@ -318258,6 +331724,8 @@ id: UBERON:0011820 name: atrioventricular region def: "An anatomical junction that divides and overlaps with and atrium and a ventricle in the heart." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "atrial ventricular junction" RELATED [GO:0003294] synonym: "atrioventricular junction" RELATED [FMA:85125, GO:0003294] synonym: "atrioventricular segment" RELATED [PMID:21234997] @@ -318280,6 +331748,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011821 name: irregular connective tissue def: "Connective tissue, which consists of a population of connective tissue cells, the intercellular matrix of which contains an irregular network of collagen and elastic fiber bundles. Examples: areolar tissue, mucoid tissue, connective tissue of peritoneum, connective tissue of fibrous pericardium." [FMA:20107] +subset: human_subset +subset: mouse_subset xref: FMA:20107 is_a: UBERON:0002384 {source="FMA"} ! connective tissue @@ -318287,6 +331757,8 @@ is_a: UBERON:0002384 {source="FMA"} ! connective tissue id: UBERON:0011822 name: dense irregular connective tissue def: "Irregular connective tissue is an irregular connective tissue, the intercellular matrix of which contains a dense irregular network of collagen and elastic fiber bundles. Examples: connective tissue of peritoneum, connective tissue of fibrous pericardium." [FMA:20109, Wikipedia:Dense_irregular_connective_tissue] +subset: human_subset +subset: mouse_subset synonym: "irregular dense connective tissue" EXACT [] synonym: "typus irregularis (textus connectivus collagenosus compactus)" EXACT [FMA:20109] xref: FMA:20109 @@ -318306,6 +331778,8 @@ property_value: external_definition "Tissue characterized by a thick, random arr id: UBERON:0011823 name: dense connective tissue def: "Dense connective tissue is mainly composed of collagen type I. Crowded between the collagen fibers are rows of fibroblasts, fiber-forming cells, that manufacture the fibers. Dense connective tissue forms strong, rope-like structures such as tendons and ligaments. Tendons attach skeletal muscles to bones; ligaments connect bones to bones at joints. Ligaments are more stretchy and contain more elastic fibers than tendons. Dense connective tissue also make up the lower layers of the skin (dermis), where it is arranged in sheets." [Wikipedia:Dense_connective_tissue] +subset: human_subset +subset: mouse_subset xref: AAO:0000121 xref: NCIT:C32450 xref: UMLS:C1511770 {source="ncithesaurus:Dense_Connective_Tissue"} @@ -318321,6 +331795,8 @@ property_value: external_definition "Connective tissue in which the fibrous comp [Term] id: UBERON:0011824 name: fibrous connective tissue +subset: human_subset +subset: mouse_subset xref: FMA:75634 xref: SCTID:363130003 is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue @@ -318329,6 +331805,8 @@ is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue id: UBERON:0011825 name: loose connective tissue def: "Irregular connective tissue, the intercellular matrix of which contains a sparse irregular network of collagen and elastic fiber bundles. Examples: areolar tissue, neuroglial tissue, mucoid tissue." [FMA:19783] +subset: human_subset +subset: mouse_subset synonym: "textus connectivus collagenosus laxus" EXACT OMO:0003011 [FMA:19783, FMA:TA] synonym: "textus connectivus laxus" EXACT OMO:0003011 [FMA:19783, FMA:TA] xref: FMA:19783 @@ -318342,6 +331820,8 @@ id: UBERON:0011826 name: vestibular gland def: "Lobular organ the parenchyma of which consists of glandular acini which communicate with the vestibule of vagina. Examples: right vestibular gland, lesser vestibular gland." [FMA:20020, Wikipedia:Vestibular_glands] subset: grouping_class +subset: human_subset +subset: mouse_subset xref: FMA:20020 xref: Wikipedia:Vestibular_glands is_a: UBERON:0005398 ! female reproductive gland @@ -318351,6 +331831,8 @@ relationship: part_of UBERON:0000997 ! mammalian vulva id: UBERON:0011827 name: areolar gland def: "A sebaceous glands in the areola surrounding the nipple." [Wikipedia:Areolar_glands] +subset: human_subset +subset: mouse_subset synonym: "accessory gland of breast" EXACT [FMA:58090] synonym: "accessory gland of Montgomery" EXACT [FMA:58090] synonym: "gland of Montgomery" EXACT [] @@ -318373,6 +331855,8 @@ property_value: seeAlso "https://sourceforge.net/p/obo/mouse-anatomy-requests/80 [Term] id: UBERON:0011828 name: areolar tubercle +subset: human_subset +subset: mouse_subset synonym: "Montgomery tubercle" EXACT [] synonym: "Montgomery's tubercle" EXACT [] synonym: "tubercle of Montgomery" EXACT [] @@ -318389,6 +331873,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/m id: UBERON:0011830 name: duct of lesser vestibular gland def: "A duct that is part of a minor vestibular gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lesser vestibular gland duct" EXACT [FMA:20094] xref: FMA:20094 is_a: UBERON:0004120 ! mesoderm-derived structure @@ -318402,6 +331888,8 @@ relationship: part_of UBERON:0000461 ! minor vestibular gland id: UBERON:0011831 name: duct of vestibular gland def: "A duct that is part of a vestibular gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "vestibular gland duct" EXACT [FMA:20097] xref: FMA:20097 is_a: UBERON:0000058 ! duct @@ -318413,6 +331901,8 @@ relationship: part_of UBERON:0011826 ! vestibular gland [Term] id: UBERON:0011844 name: duct of areolar gland +subset: human_subset +subset: mouse_subset synonym: "areolar gland duct" EXACT [FMA:67744] xref: FMA:67744 is_a: UBERON:0001765 ! mammary duct @@ -318423,6 +331913,8 @@ relationship: part_of UBERON:0011827 ! areolar gland id: UBERON:0011845 name: duct of sebaceous gland def: "A duct that is part of a sebaceous gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "sebaceous gland duct" EXACT [FMA:70947] xref: FMA:70947 xref: NCIT:C33520 @@ -318436,6 +331928,8 @@ relationship: part_of UBERON:0001821 ! sebaceous gland id: UBERON:0011846 name: acinus of sebaceous gland def: "An acinus that is part of a sebaceous gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "sebaceous gland acinus" EXACT [FMA:59657] xref: FMA:59657 is_a: UBERON:0004121 ! ectoderm-derived structure @@ -318448,6 +331942,8 @@ relationship: part_of UBERON:0001821 ! sebaceous gland id: UBERON:0011847 name: acinus of parotid gland def: "An acinus that is part of a parotid gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "parotid gland acinus" EXACT [FMA:59863] xref: EMAPA:37933 {source="MA:th"} @@ -318463,6 +331959,8 @@ relationship: part_of UBERON:0001831 ! parotid gland id: UBERON:0011850 name: acinus of salivary gland def: "An acinus that is part of a salivary gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "salivary gland acinus" EXACT [FMA:59870] xref: FMA:59870 is_a: UBERON:0011858 ! acinus of exocrine gland @@ -318474,6 +331972,8 @@ relationship: part_of UBERON:0001044 ! saliva-secreting gland id: UBERON:0011854 name: acinus of areolar gland def: "An acinus that is part of a areolar gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "areolar gland acinus" EXACT [FMA:62081] xref: FMA:62081 is_a: UBERON:0011846 ! acinus of sebaceous gland @@ -318486,6 +331986,8 @@ relationship: part_of UBERON:0011827 ! areolar gland id: UBERON:0011856 name: acinus of lactiferous gland def: "An acinus that is part of a mammary gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lactiferous gland acinus" EXACT [FMA:74438] xref: FMA:74438 is_a: UBERON:0004121 ! ectoderm-derived structure @@ -318499,6 +332001,8 @@ relationship: part_of UBERON:0001912 ! lobule of mammary gland id: UBERON:0011857 name: acinus of lacrimal gland def: "An acinus that is part of a lacrimal gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lacrimal gland acinus" EXACT [FMA:85250] xref: FMA:85250 is_a: UBERON:0004121 ! ectoderm-derived structure @@ -318511,6 +332015,8 @@ relationship: part_of UBERON:0001817 ! lacrimal gland id: UBERON:0011858 name: acinus of exocrine gland def: "An acinus that is part of a exocrine gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "exocrine gland acinus" EXACT [] is_a: UBERON:0009842 ! glandular acinus intersection_of: UBERON:0009842 ! glandular acinus @@ -318522,6 +332028,8 @@ id: UBERON:0011859 name: internal acoustic meatus def: "The internal auditory meatus (also internal acoustic meatus, internal auditory canal, and internal acoustic canal) is a canal in the petrous bone of the temporal bone of the skull that carries nerves from inside the cranium towards the middle and inner ear compartments namely cranial nerve VII and cranial nerve VIII." [Wikipedia:Internal_auditory_meatus] comment: Alternate def: The internal acoustic meatus (or internal auditory meatus ) is an opening on the medial surface of the petrous temporal bone. It is through this passageway that the facial nerve (cranial nerve VII) and vestibulocochlear nerve (cranial nerve VIII) pass to reach their sites of innervation. The vestibulocochlear nerve divides at the internal acoustic meatus to continue as separate vestibular and cochlear components. [MURDOCH:908] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "internal acoustic canal" RELATED [Wikipedia:Internal_auditory_meatus] synonym: "internal acoustic meatus" RELATED [Wikipedia:Internal_auditory_meatus] @@ -318543,6 +332051,8 @@ relationship: part_of UBERON:0001846 {source="MP"} ! internal ear [Term] id: UBERON:0011860 name: collection of collagen fibrils +subset: human_subset +subset: mouse_subset xref: FMA:63212 xref: MESH:D024022 xref: NCIT:C32339 @@ -318557,6 +332067,8 @@ property_value: external_ontology_notes "the FMA class specifically refers to ur id: UBERON:0011861 name: aorta collagen fibril def: "The connective tissue bundles in the extracellular matrix of aorta tissue that are composed of collagen, and play a role in tissue strength and elasticity." [MP:0011640] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011860 ! collection of collagen fibrils @@ -318569,6 +332081,8 @@ relationship: part_of UBERON:0004664 ! aorta tunica adventitia id: UBERON:0011862 name: pulmonary collagen fibril def: "The connective tissue bundles in the extracellular matrix of pulmonary tissue that are composed of collagen, and play a role in tissue strength and elasticity." [MP:0011641] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011860 ! collection of collagen fibrils @@ -318581,6 +332095,8 @@ relationship: part_of UBERON:0002048 ! lung id: UBERON:0011863 name: bone collagen fibril def: "The connective tissue bundles in the extracellular matrix of bone tissue that are composed of collagen, and play a role in tissue strength and elasticity." [MP:0011642] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0011860 ! collection of collagen fibrils intersection_of: UBERON:0011860 ! collection of collagen fibrils @@ -318591,6 +332107,8 @@ relationship: part_of UBERON:0001474 ! bone element id: UBERON:0011864 name: tendon collagen fibril def: "The connective tissue bundles in the extracellular matrix of tendon tissue that are composed of collagen, and play a role in tissue strength and elasticity." [MP:0011643] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0011860 ! collection of collagen fibrils intersection_of: UBERON:0011860 ! collection of collagen fibrils @@ -318602,6 +332120,8 @@ relationship: part_of UBERON:0000043 ! tendon id: UBERON:0011865 name: corneal stroma collagen fibril def: "The connective tissue bundles in the extracellular matrix of corneal stroma that are composed of collagen, and play a role in tissue strength and elasticity." [MP:0011650] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011860 ! collection of collagen fibrils @@ -318614,6 +332134,8 @@ relationship: part_of UBERON:0001777 ! substantia propria of cornea id: UBERON:0011866 name: condylar joint def: "In a condyloid joint (condyloid articulation, ellipsoidal joint) an ovoid articular surface, or condyle, is received into an elliptical cavity. This permits movement in two planes, allowing flexion, extension, adduction, abduction, and circumduction." [Wikipedia:Condyloid_joint] +subset: human_subset +subset: mouse_subset synonym: "articulatio ellipsoidea" RELATED OMO:0003011 [Wikipedia:Condyloid_joint] synonym: "condylar joint" RELATED [Wikipedia:Condyloid_joint] synonym: "condyloid" RELATED [Wikipedia:Condyloid_joint] @@ -318628,6 +332150,8 @@ is_a: UBERON:0002217 ! synovial joint [Term] id: UBERON:0011867 name: extensor carpi radialis muscle +subset: human_subset +subset: mouse_subset synonym: "extensor carpi radialis" EXACT [] xref: EMAPA:36187 xref: SCTID:276166006 @@ -318641,6 +332165,8 @@ relationship: innervated_by UBERON:0001492 ! radial nerve id: UBERON:0011868 name: midcarpal joint def: "An intercarpal that connects a proximal and distal carpal bone." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Midcarpal_joint] +subset: human_subset +subset: mouse_subset synonym: "articulatio mediocarpalis" EXACT OMO:0003011 [Wikipedia:Midcarpal_joint] synonym: "transverse carpal joint" EXACT [FMA:35293] xref: FMA:35293 @@ -318655,6 +332181,8 @@ id: UBERON:0011869 name: pisiform joint def: "It is a joint between the pisiform and triquetrum." [Wikipedia:Pisiform_joint] comment: Wikipedia says pisiform and triquetral- todo check pisotriquetral +subset: human_subset +subset: mouse_subset synonym: "articulatio ossis pisiformis" EXACT OMO:0003011 [Wikipedia:Pisiform_joint] xref: FMA:73126 xref: Wikipedia:Pisiform_joint @@ -318669,6 +332197,8 @@ relationship: connects UBERON:0002445 ! ulnare id: UBERON:0011870 name: pisotriquetral joint comment: See notes for pisiform +subset: human_subset +subset: mouse_subset xref: FMA:42318 is_a: UBERON:0011132 {source="FMA"} ! intercarpal joint @@ -318676,6 +332206,8 @@ is_a: UBERON:0011132 {source="FMA"} ! intercarpal joint id: UBERON:0011871 name: nasomaxillary suture def: "A cranial suture that connects a nasal bone and connects a maxilla." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "articulation of the nasal bone with maxilla" RELATED [] synonym: "nasomaxillary suture of skull" EXACT [FMA:52960] xref: FMA:52960 @@ -318690,6 +332222,8 @@ relationship: connects UBERON:0002397 ! maxilla id: UBERON:0011873 name: synarthrosis def: "A synarthrosis is a type of joint which permits very little or no movement under normal conditions. Most synarthrosis joints are fibrous. Suture joints and synchondroses are synarthroses." [Wikipedia:Synarthrosis] +subset: human_subset +subset: mouse_subset synonym: "synarthrodial" RELATED [Wikipedia:Synarthrosis] synonym: "synarthrodial joint" RELATED [Wikipedia:Synarthrosis] synonym: "synarthroses" RELATED [Wikipedia:Synarthrosis] @@ -318702,6 +332236,8 @@ is_a: UBERON:0000982 ! skeletal joint id: UBERON:0011874 name: amphiarthrosis def: "Amphiarthrosis is a type of continuous, slightly movable joint." [Wikipedia:Amphiarthrosis] +subset: human_subset +subset: mouse_subset synonym: "amphiarthrodial" RELATED [Wikipedia:Amphiarthrosis] synonym: "amphiarthroses" RELATED [Wikipedia:Amphiarthrosis] xref: FMA:76693 @@ -318714,6 +332250,8 @@ is_a: UBERON:0000982 ! skeletal joint id: UBERON:0011875 name: ligament of sternoclavicular joint def: "A skeletal ligament that is part of a sternoclavicular joint." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ligamentum sternoclavicularis" EXACT OMO:0003011 [] synonym: "sternoclavicular joint ligament" EXACT [FMA:63980] xref: FMA:63980 @@ -318727,6 +332265,8 @@ relationship: part_of UBERON:0001469 ! sternoclavicular joint id: UBERON:0011876 name: body of tongue def: "The oral part of the tongue anterior to the terminal sulcus." [http://www.drugs.com/dict/body-of-tongue.html] +subset: human_subset +subset: mouse_subset synonym: "corpus linguae" EXACT OMO:0003011 [http://www.drugs.com/dict/body-of-tongue.html] synonym: "tongue body" EXACT [FMA:54641] xref: FMA:54641 @@ -318738,6 +332278,8 @@ relationship: part_of UBERON:0001723 {source="FMA"} ! tongue id: UBERON:0011877 name: margin of tongue def: "The lateral border that separates the dorsum from the inferior surface of the tongue on each side, the two borders meeting anteriorly at the apex.." [http://www.drugs.com/dict/margin-of-tongue.html] +subset: human_subset +subset: mouse_subset synonym: "lateral border of tongue" EXACT [NCIT:C160983] synonym: "lateral surface of the tongue" EXACT [NCIT:C160983] synonym: "margo linguae" EXACT OMO:0003011 [http://www.drugs.com/dict/margin-of-tongue.html] @@ -318757,6 +332299,8 @@ relationship: part_of UBERON:0001723 ! tongue id: UBERON:0011878 name: muscle layer of esophagus def: "A muscle layer that is part of a wall of esophagus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscle coat of esophagus" EXACT [FMA:62998] synonym: "muscular coat of oesophagus" EXACT [FMA:62998] synonym: "muscular layer of oesophagus" EXACT [FMA:62998] @@ -318776,6 +332320,8 @@ property_value: structure_notes "In the upper esophagus, part of the externa is id: UBERON:0011879 name: mesorchium def: "The testes, at an early period of fetal life, are placed at the back part of the abdominal cavity, behind the peritoneum, and each is attached by a peritoneal fold, the mesorchium, to the mesonephros." [Wikipedia:Mesorchium] +subset: human_subset +subset: mouse_subset synonym: "testis mesentery" RELATED [EMAPA:17971] xref: AAO:0010530 xref: EMAPA:17971 @@ -318789,6 +332335,8 @@ relationship: part_of UBERON:0003135 {source="EMAPA"} ! male reproductive organ id: UBERON:0011892 name: anterior uvea def: "Front (ventral) portion of the vascular, pigmentary, or middle coat of the eye, including the ciliary body and the iris." [MP:0005194] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior part of uveal tract" EXACT [] synonym: "anterior uveal tract" EXACT [] @@ -318815,6 +332363,8 @@ relationship: part_of UBERON:0001801 ! anterior segment of eyeball id: UBERON:0011893 name: endoneurial fluid def: "Fluid of the ganglia and peripheral nerves that lie outside the brain and spinal cord." [MGI:llw2, MP:0003633] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37850 {source="MA:th"} is_a: UBERON:0007794 {source="FMA"} ! secretion of serous gland @@ -318827,6 +332377,8 @@ relationship: part_of UBERON:0000123 ! endoneurium id: UBERON:0011894 name: lumen of vagina def: "An organ cavity that is part of a vagina." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "vaginal lumen" EXACT [FMA:19982] xref: FMA:19982 is_a: UBERON:0002558 ! organ cavity @@ -318838,6 +332390,8 @@ relationship: part_of UBERON:0000996 ! vagina id: UBERON:0011895 name: endomysium def: "A layer of connective tissue that ensheaths a muscle fiber and is composed mostly from reticular fibers. It also contains capillaries, nerves and lymphatics. The term cardiac skeleton is sometimes considered synonymous with endomysium, but sometimes it refers to the combination of the endomysium and perimysium." [Wikipedia:Endomysium] +subset: human_subset +subset: mouse_subset synonym: "fascia of muscle fiber" EXACT [FMA:9729] xref: BTO:0006241 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: FMA:9729 @@ -318856,6 +332410,8 @@ relationship: surrounds CL:0000187 ! muscle cell id: UBERON:0011896 name: smooth muscle endomysium def: "Reticular tissue which surrounds a smooth muscle cell." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: FMA:260651 is_a: UBERON:0011895 ! endomysium intersection_of: UBERON:0011895 ! endomysium @@ -318867,6 +332423,8 @@ relationship: surrounds CL:0000192 ! smooth muscle cell id: UBERON:0011897 name: cardiac endomysium def: "Reticular tissue which surrounds a cardiac myocyte." [FMA:83112] +subset: human_subset +subset: mouse_subset synonym: "endomysium of cardiac muscle cell" EXACT [FMA:83112] synonym: "fibrocollagenous sheath of cardiac muscle cell" EXACT [FMA:83112] xref: FMA:83112 @@ -318880,6 +332438,8 @@ relationship: surrounds CL:0000746 ! cardiac muscle cell id: UBERON:0011898 name: skeletal muscle endomysium def: "Reticular tissue which surrounds a skeletal muscle cell." [FMA:86022] +subset: human_subset +subset: mouse_subset xref: FMA:86022 is_a: UBERON:0011895 ! endomysium intersection_of: UBERON:0011895 ! endomysium @@ -318891,6 +332451,8 @@ relationship: surrounds CL:0000188 ! cell of skeletal muscle id: UBERON:0011899 name: epimysium def: "Epimysium is a layer of connective tissue which ensheaths the entire muscle. It is composed of dense irregular connective tissue. It is continuous with fascia and other connective tissue wrappings of muscle including the endomysium, and perimysium. It is also continuous with tendons where it becomes thicker and collagenous." [Wikipedia:Epimysium] +subset: human_subset +subset: mouse_subset synonym: "epimysia" RELATED OMO:0003004 [Wikipedia:Epimysium] synonym: "fascia of muscle organ" EXACT [FMA:9726] xref: FMA:9726 @@ -318908,6 +332470,8 @@ property_value: function_notes "The Epimysium also protects muscles from frictio id: UBERON:0011900 name: perimysium def: "The fibrous sheath enveloping each of the primary bundles of skeletal muscle fibers." [http://medical-dictionary.thefreedictionary.com/perimysium, Wikipedia:Perimysium] +subset: human_subset +subset: mouse_subset synonym: "fascia of muscle fasciculus" EXACT [FMA:9728] xref: FMA:9728 xref: NCIT:C33299 @@ -318922,6 +332486,8 @@ relationship: part_of UBERON:0001134 {source="FMA"} ! skeletal muscle tissue id: UBERON:0011901 name: hair matrix comment: The hair matrix surrounds the top and sides of the dermal papilla. The hair matrix cells give rise to 6 different types of cells that make up the different layers of the hair shaft and the inner root sheath. +subset: human_subset +subset: mouse_subset xref: FMA:70945 is_a: UBERON:0000021 ! cutaneous appendage is_a: UBERON:0004121 ! ectoderm-derived structure @@ -318941,6 +332507,8 @@ relationship: part_of UBERON:0005052 ! gizzard id: UBERON:0011904 name: gastrolith def: "A rock held inside a gastrointestinal tract." [Wikipedia:Gastrolith] +subset: human_subset +subset: mouse_subset synonym: "gizzard stone" RELATED [Wikipedia:Gastrolith] synonym: "stomach stone" RELATED [Wikipedia:Gastrolith] xref: Wikipedia:Gastrolith @@ -318952,6 +332520,8 @@ id: UBERON:0011905 name: plantaris def: "Plantaris is a vestigial structure and one of the superficial muscles of the posterior crural compartment of the leg. It is innervated by the tibial nerve (S1, S2) . It is composed of a thin muscle belly and a long thin tendon. It is approximately 2-4 inches long, and is absent in 7 - 10% of the human population. It is one of the plantar flexors in the superior compartment of the leg along with the gastrocnemius, and soleus. The plantaris is considered an unimportant muscle, it mainly acts with gastrocnemius[WP]." [Wikipedia:Plantaris_muscle] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "musculus plantaris" EXACT OMO:0003011 [] synonym: "plantaris" EXACT [FMA:22543] xref: BTO:0006312 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} @@ -318970,6 +332540,8 @@ property_value: editor_note "todo - coordinate with phenoscape-ext on representa [Term] id: UBERON:0011906 name: muscle head +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "caput (musculus)" EXACT [FMA:85453] synonym: "caput musculi" EXACT [FMA:85453] @@ -318986,6 +332558,8 @@ name: gastrocnemius medialis def: "Missing definition for term UBERON:0011907. Please replace it using linked reference." [ISBN:0073040584] comment: Mammalian gastrocnemius medialis and flexor hallucis longus arise from reptilian gastrocnemius internus[Kardong] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "caput mediale (musculus gastrocnemius)" EXACT [FMA:45956] synonym: "caput mediale musculus gastrocnemii" EXACT OMO:0003011 [FMA:45956, FMA:TA] synonym: "medial head of gastrocnemius" EXACT [FMA:45956] @@ -319004,6 +332578,8 @@ name: gastrocnemius lateralis def: "Missing definition for term UBERON:0011908. Please replace it using linked reference." [ISBN:0073040584] comment: Mammalian gastrocnemius lateralis, soleus and plantaris arise from reptilian gastrocnemius externus[Kardong] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "caput laterale (musculus gastrocnemius)" EXACT [FMA:45959] synonym: "caput laterale musculus gastrocnemii" EXACT OMO:0003011 [FMA:45959, FMA:TA] synonym: "lateral head of gastrocnemius" EXACT [FMA:45959] @@ -319019,6 +332595,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011909 name: gastrocnemius internus def: "Missing definition for term UBERON:0011909. Please replace it using linked reference." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "M. gastrocnemius internus" EXACT [] synonym: "musculus gastrocnemius internus" EXACT [] is_a: UBERON:0004256 ! hindlimb zeugopod muscle @@ -319028,6 +332606,8 @@ relationship: part_of UBERON:0003823 ! hindlimb zeugopod id: UBERON:0011910 name: gastrocnemius externus def: "Missing definition for term UBERON:0011910. Please replace it using linked reference." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "M. gastrocnemius externus" EXACT [] synonym: "musculus gastrocnemius externus" EXACT [] is_a: UBERON:0004256 ! hindlimb zeugopod muscle @@ -319037,6 +332617,8 @@ relationship: part_of UBERON:0003823 ! hindlimb zeugopod id: UBERON:0011915 name: cerebellar glomerulus def: "An intertwined cluster of nerve fibers surrounded by glia where mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons." [ISBN:0838580343, MP:0004099] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebellar glomeruli" EXACT OMO:0003004 [] xref: EMAPA:37812 {source="MA:th"} @@ -319051,6 +332633,8 @@ relationship: part_of UBERON:0002956 ! granular layer of cerebellar cortex id: UBERON:0011917 name: thalamic glomerulus def: "Synaptic structure found in thalamic relay nuclei consising of a complex of afferent terminals, relay cell dendrites, interneuron dendrites and other processes. These complexes are surrounded by astrocytic processes." [NIF_Subcellular:nlx_subcell_20090504] +subset: human_subset +subset: mouse_subset synonym: "thalamic glomeruli" EXACT OMO:0003004 [] xref: NIF_Subcellular:nlx_subcell_20090504 is_a: UBERON:0001047 ! neural glomerulus @@ -319062,6 +332646,8 @@ relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus id: UBERON:0011918 name: line of Schwalbe def: "The thickened peripheral margin of the vitreous membrane of the cornea." [MP:0006250] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "Schwalbe line" EXACT [FMA:58422] synonym: "Schwalbe's line" EXACT [FMA:58422] @@ -319078,6 +332664,8 @@ property_value: external_ontology_notes "A line in FMA, a structure in MP" xsd:s id: UBERON:0011919 name: yolk sac blood island def: "Masses of developing blood cells attached to endothelium in the yolk sac." [MP:0011204] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "visceral yolk sac blood island" EXACT [MP:0011204] synonym: "yolk sac blood islands" EXACT [EHDAA2:0000177] @@ -319093,6 +332681,8 @@ relationship: part_of UBERON:0003316 ! mesenchyme of yolk sac [Term] id: UBERON:0011921 name: connecting stalk blood islands +subset: human_subset +subset: mouse_subset synonym: "blood island of umbilical vesicle" EXACT [Wikipedia:Blood_island] synonym: "insula sanguinea vesiculae umbilicalis" EXACT [Wikipedia:Blood_island] xref: EHDAA2:0003242 @@ -319107,6 +332697,8 @@ property_value: external_ontology_notes "in EHDAA2 gives rise to connecting stal id: UBERON:0011922 name: cochlear basement membrane def: "The the continuous basement membrane found within the membranous labyrinth of the cochlea, known to extend from the limbus, down to the inner sulcus, across the basilar membrane, up to the external sulcus to the spiral prominence and radiating into the spiral ligament ensheathing the root cell processes." [MP:0004598] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "basement membrane of cochlear labyrinth" EXACT [] synonym: "cochlea basement membrane" EXACT [] @@ -319122,6 +332714,8 @@ id: UBERON:0011924 name: postganglionic autonomic fiber def: "Nerve fibers which project from cell bodies of autonomic ganglia to synapses on target organs." [MESH:A08.663.542.100, Wikipedia:Postganglionic_nerve_fibers] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "postganglionic autonomic fibre" RELATED [] synonym: "postganglionic nerve fiber" EXACT [FMA:5924] xref: FMA:5924 @@ -319143,6 +332737,8 @@ id: UBERON:0011925 name: preganglionic autonomic fiber def: "Nerve fibers which project from the central nervous system to autonomic ganglia. In the sympathetic division most preganglionic fibers originate with neurons in the intermediolateral column of the spinal cord, exit via ventral roots from upper thoracic through lower lumbar segments, and project to the paravertebral ganglia; there they either terminate in synapses or continue through the splanchnic nerves to the prevertebral ganglia. In the parasympathetic division the fibers originate in neurons of the brain stem and sacral spinal cord. In both divisions the principal transmitter is acetylcholine but peptide cotransmitters may also be released." [MESH:A08.663.542.122, Wikipedia:Preganglionic_nerve_fibers] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "preganglionic autonomic fibre" RELATED [] synonym: "preganglionic nerve fiber" EXACT [FMA:5923] xref: FMA:5923 @@ -319163,6 +332759,8 @@ id: UBERON:0011926 name: postganglionic sympathetic fiber def: "A noradrenergic or adrenergic axonal fiber projecting from a sympathetic ganglion to an effector organ." [MP:0008312] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "postganglionic sympathetic fiber" RELATED [MESH:A08.663.542.075.800] synonym: "sympathetic postganglionic fiber" RELATED [MP:0008312] xref: MESH:D017779 @@ -319183,6 +332781,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011927 name: preganglionic sympathetic fiber def: "A cholinergic axonal fiber projecting from the CNS to a sympathetic ganglion." [MP:0008310] +subset: human_subset +subset: mouse_subset synonym: "sympathetic preganglionic fiber" RELATED [MP:0008310] xref: SCTID:323517007 is_a: UBERON:0011925 ! preganglionic autonomic fiber @@ -319198,6 +332798,8 @@ id: UBERON:0011929 name: postganglionic parasympathetic fiber def: "A cholinergic axonal fiber projecting from a parasympathetic ganglion to an effector organ." [MP:0008313] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "parasympathetic postganglionic fiber" RELATED [MP:0008313] xref: MESH:D017777 xref: NCIT:C12649 @@ -319216,6 +332818,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011930 name: preganglionic parasympathetic fiber def: "A cholinergic axonal fibers projecting from the CNS to a parasympathetic ganglion." [MP:0008311] +subset: human_subset +subset: mouse_subset synonym: "parasympathetic preganglionic fiber" RELATED [MP:0008311] xref: Wikipedia:Preganglionic_fibers is_a: UBERON:0011925 ! preganglionic autonomic fiber @@ -319230,6 +332834,8 @@ relationship: part_of UBERON:0004293 ! parasympathetic nerve id: UBERON:0011931 name: nasal hair def: "Hair in the nose." [Wikipedia:Nasal_hair] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hair of nose" EXACT [FMA:53670] synonym: "hair of vestibular part of nose" EXACT [FMA:53670] @@ -319246,6 +332852,8 @@ relationship: part_of UBERON:0000004 ! nose id: UBERON:0011932 name: pilosebaceous unit def: "An epidermal invagination that has as parts a hair follicle, a sebaceous gland, and arrector pili muscle." [ISBN:0123813611, PMCID:PMC3130146, Wikipedia:Pilosebaceous_unit] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fabrica pilosebacea" EXACT [Wikipedia:Pilosebaceous_unit] synonym: "pilo-sebaceous apparatus" EXACT [FMA:70661] @@ -319265,6 +332873,7 @@ relationship: part_of UBERON:0006003 {source="ISBN:0123813611"} ! integumentary id: UBERON:0011933 name: vibrissa unit def: "A pilosebaceous unit that contains a strand of vibrissa hair (a specialized tactile hair) with the follicle incorporating a blood sinus, heavily innervated by sensory nerves." [http://orcid.org/0000-0002-6601-2165] +subset: mouse_subset subset: pheno_slim synonym: "vibrissa" RELATED [MA:0000163] xref: EMAPA:17529 @@ -319281,6 +332890,7 @@ property_value: external_ontology_notes "MA has distinct classes for vibrissa an id: UBERON:0011936 name: vibrissa hair bulb def: "A bulb of hair follicle that is part of a vibrissa unit." [OBOL:automatic] +subset: mouse_subset synonym: "bulb of sinus hair" EXACT [EMAPA:26753] synonym: "bulb of vibrissa follicle" EXACT [] synonym: "vibrissa bulb" EXACT [EMAPA:26716] @@ -319297,6 +332907,7 @@ property_value: seeAlso "https://github.com/obophenotype/mouse-anatomy-ontology/ id: UBERON:0011937 name: vibrissa root sheath def: "A hair root sheath that is part of a vibrissa unit." [OBOL:automatic] +subset: mouse_subset synonym: "root sheath of sinus hair" EXACT [EMAPA:26765] synonym: "root sheath of vibrissa" EXACT [] synonym: "root sheath of vibrissa hair" EXACT [] @@ -319312,6 +332923,7 @@ relationship: part_of UBERON:0011936 {is_inferred="true", source="https://github id: UBERON:0011938 name: vibrissa inner root sheath def: "A hair inner root sheath that is part of a vibrissa unit." [OBOL:automatic] +subset: mouse_subset xref: EMAPA:36477 xref: MA:0000785 is_a: UBERON:0005941 ! hair inner root sheath @@ -319325,6 +332937,7 @@ relationship: part_of UBERON:0011936 {source="https://github.com/obophenotype/ub id: UBERON:0011939 name: vibrissa outer root sheath def: "A hair outer root sheath that is part of a vibrissa unit." [OBOL:automatic] +subset: mouse_subset xref: EMAPA:36478 xref: MA:0000786 is_a: UBERON:0005942 ! hair outer root sheath @@ -319338,6 +332951,7 @@ relationship: part_of UBERON:0011936 {source="https://github.com/obophenotype/ub id: UBERON:0011940 name: arrector pili muscle of vibrissa def: "An arrector muscle of hair that is part of a vibrissa hair." [OBOL:automatic] +subset: mouse_subset synonym: "arrector pilorum muscle of vibrissa" EXACT [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:26771 is_a: UBERON:0002033 ! arrector muscle of hair @@ -319350,6 +332964,8 @@ relationship: part_of UBERON:0006378 ! strand of vibrissa hair id: UBERON:0011941 name: lateral angle of scapula def: "An angle of the scapula that is broad and bears the glenoid cavity or fossa[WP,unvetted]." [Wikipedia:Lateral_angle_of_scapula] +subset: human_subset +subset: mouse_subset synonym: "angulus lateralis (scapula)" EXACT [FMA:23249] synonym: "angulus lateralis scapulae" EXACT OMO:0003011 [Wikipedia:Lateral_angle_of_scapula] synonym: "glenoid angle of scapula" RELATED [Wikipedia:Lateral_angle_of_scapula] @@ -319368,6 +332984,8 @@ is_obsolete: true id: UBERON:0011944 name: subintestinal vein subset: dubious_grouping +subset: human_subset +subset: mouse_subset synonym: "SIV" EXACT [ZFA:0005035] synonym: "vitelline vein" RELATED INCONSISTENT [ZFA:0005035] xref: TAO:0005035 @@ -319379,6 +332997,8 @@ is_a: UBERON:0001638 {source="XAO"} ! vein id: UBERON:0011945 name: luminal layer of epithelium subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0005162 ! multi cell part structure relationship: part_of UBERON:0000483 ! epithelium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -319386,6 +333006,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0011946 name: subluminal layer of epithelium +subset: human_subset +subset: mouse_subset is_a: UBERON:0005162 ! multi cell part structure relationship: part_of UBERON:0000483 ! epithelium @@ -319393,6 +333015,8 @@ relationship: part_of UBERON:0000483 ! epithelium id: UBERON:0011947 name: ureter luminal urothelium def: "A luminal layer of epithelium that is part of a ureter." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37779 {source="MA:th"} xref: MA:0002656 @@ -319406,6 +333030,8 @@ relationship: part_of UBERON:0001254 ! urothelium of ureter [Term] id: UBERON:0011948 name: ureter subluminal urothelium +subset: human_subset +subset: mouse_subset xref: EMAPA:37780 {source="MA:th"} xref: MA:0002657 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure @@ -319417,6 +333043,8 @@ id: UBERON:0011949 name: endometrium luminal epithelium def: "A luminal layer of epithelium that is part of a endometrium epithelium." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:35309 xref: MA:0002733 is_a: UBERON:0011945 ! luminal layer of epithelium @@ -319429,6 +333057,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011950 name: mammary gland luminal epithelium def: "The inner cell layer of the mammary epithelium bilayer that lines the luminal surface of mammary gland ducts and alveoli; luminal cells have only limited contact with the underlying basement membrane and surrounding connective tissue; they are secretory epithelial cells characterized by the expression of the receptors for systemic hormones, i.e. estrogens, progesterone and prolactin." [MGI:anna] +subset: human_subset +subset: mouse_subset synonym: "lumina layer of epithelium of lactiferous gland" EXACT [FMA:74458] xref: EMAPA:37902 {source="MA:th"} xref: FMA:74458 @@ -319443,6 +333073,8 @@ relationship: part_of UBERON:0003244 {is_inferred="true", source="https://github id: UBERON:0011951 name: prostate luminal epithelium def: "A luminal layer of epithelium that is part of a prostate gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "subdivision of luminal layer of epithelium of prostatic gland" EXACT [FMA:74262] xref: FMA:74262 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure @@ -319455,12 +333087,16 @@ relationship: part_of UBERON:0002367 ! prostate gland [Term] id: UBERON:0011952 name: non-glandular epithelium +subset: human_subset +subset: mouse_subset is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0011953 name: stomach glandular region def: "A region of the stomach that is lined with glandular epithelium." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "glandular stomach" RELATED [] xref: EMAPA:17623 @@ -319478,6 +333114,8 @@ property_value: editor_note "as currently defined, this would include the cardia id: UBERON:0011954 name: stomach non-glandular region def: "A region of the stomach is lined with non-glandular epithelium. Examples of a stomach non-glandular region are found in rodents." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "stomach cutaneous region" RELATED [EMAPA:17627] synonym: "stomach ependymal region" RELATED [EMAPA:17627] xref: MA:0001625 @@ -319492,6 +333130,8 @@ id: UBERON:0011955 name: left hepatic vein def: "A hepatic vein that is part of a left lobe of liver." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:37164 {source="MA:th"} xref: FMA:14339 xref: MA:0003032 @@ -319507,6 +333147,8 @@ id: UBERON:0011956 name: right hepatic vein def: "A hepatic vein that is part of a right lobe of liver." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:37377 {source="MA:th"} xref: FMA:14338 xref: MA:0003034 @@ -319521,6 +333163,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011957 name: middle hepatic vein subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:37175 {source="MA:th"} xref: FMA:14340 xref: MA:0003033 @@ -319532,6 +333176,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0011958 name: acetabular labrum def: "A ring of cartilage that surrounds the acetabulum[WP,unvetted]." [Wikipedia:Acetabular_labrum] +subset: human_subset +subset: mouse_subset synonym: "acetabular lip" RELATED [] synonym: "acetabular rim" RELATED INCONSISTENT [AAO:0000864] synonym: "cotyloid ligament" RELATED [Wikipedia:Acetabular_labrum] @@ -319557,6 +333203,8 @@ property_value: structure_notes "some sources treat this as fibrocartilage" xsd: id: UBERON:0011959 name: glenoid labrum of scapula def: "A ring of fibrocartilage attached to the margin of the glenoid cavity of the scapula." [http://www.medilexicon.com/medicaldictionary.php?t=47475, Wikipedia:Glenoid_labrum] +subset: human_subset +subset: mouse_subset synonym: "glenoid labrum" BROAD [] synonym: "glenoidal labrum" BROAD [] synonym: "glenoidal labrum of glenohumeral joint" EXACT [] @@ -319573,6 +333221,8 @@ property_value: editor_note "consider classifying as 'annulus fibrosus'" xsd:str id: UBERON:0011960 name: articular capsule of glenohumeral joint def: "An articular capsule that is part of the glenohumeral joint." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "articular capsule of humerus" EXACT [Wikipedia:Articular_capsule_of_the_humerus] synonym: "articular capsule of shoulder joint" EXACT [] synonym: "capsule of shoulder joint" EXACT [FMA:34944] @@ -319591,6 +333241,8 @@ relationship: surrounds UBERON:0001470 ! glenohumeral joint id: UBERON:0011961 name: articular capsule of hip joint def: "An articular capsule that is part of the hip joint." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "capsula articularis coxae" EXACT OMO:0003011 [Wikipedia:Capsule_of_hip_joint] synonym: "capsule of hip joint" EXACT [Wikipedia:Capsule_of_hip_joint] synonym: "fibrous capsule of hip joint" EXACT [FMA:42821] @@ -319608,6 +333260,8 @@ relationship: surrounds UBERON:0001486 ! hip joint id: UBERON:0011962 name: transverse tarsal joint def: "The transverse tarsal joint is formed by the articulation of the calcaneus with the cuboid, and the articulation of the talus with the navicular. The movement which takes place in this joint is more extensive than that in the other tarsal joints, and consists of a sort of rotation by means of which the foot may be slightly flexed or extended, the sole being at the same time carried medially (inverted) or laterally." [Wikipedia:Transverse_tarsal_joint] +subset: human_subset +subset: mouse_subset synonym: "articulatio tarsi transversa" EXACT [Wikipedia:Transverse_tarsal_joint] synonym: "chopart's joint" EXACT [FMA:35201] synonym: "midtarsal joint" EXACT [Wikipedia:Transverse_tarsal_joint] @@ -319623,6 +333277,8 @@ relationship: part_of UBERON:0002387 ! pes id: UBERON:0011963 name: talocalcaneonavicular joint def: "The talocalcaneonavicular articulation is an arthrodial joint: the rounded head of the talus being received into the concavity formed by the posterior surface of the navicular, the anterior articular surface of the calcaneus, and the upper surface of the plantar calcaneonavicular ligament. There are two ligaments in this joint: the articular capsule and the dorsal talonavicular." [Wikipedia:Talocalcaneonavicular_articulation] +subset: human_subset +subset: mouse_subset synonym: "articulatio talocalcaneonavicularis" EXACT OMO:0003011 [Wikipedia:Talocalcaneonavicular_articulation] synonym: "talocalcaneonavicular articulation" EXACT [Wikipedia:Talocalcaneonavicular_articulation] xref: FMA:35204 @@ -319642,6 +333298,8 @@ relationship: part_of UBERON:0011962 {source="FMA-modified"} ! transverse tarsal id: UBERON:0011964 name: calcaneocuboid joint def: "Calcaneocuboid Articulation (articulation of the calcaneus with the cuboid). The ligaments connecting the calcaneus with the cuboid are five in number, viz. , the articular capsule, the dorsal calcaneocuboid, part of the bifurcated, the long plantar, and the plantar calcaneocuboid." [Wikipedia:Calcaneocuboid_articulation] +subset: human_subset +subset: mouse_subset synonym: "articulatio calcaneocubiodea" EXACT OMO:0003011 [FMA:35207] synonym: "calcaneocuboid articulation" EXACT [Wikipedia:Calcaneocuboid_articulation] synonym: "calcaneocuboidal joint" EXACT [] @@ -319660,6 +333318,8 @@ relationship: part_of UBERON:0011962 {source="FMA-modified"} ! transverse tarsal id: UBERON:0011965 name: saddle joint def: "In a saddle joint (sellar joint, articulation by reciprocal reception) the opposing surfaces are reciprocally concave-convex." [Wikipedia:Saddle_joint] +subset: human_subset +subset: mouse_subset synonym: "articulation by reciprocal reception" RELATED [Wikipedia:Saddle_joint] synonym: "sellar joint" EXACT [Wikipedia:Saddle_joint] xref: FMA:75298 @@ -319671,6 +333331,8 @@ is_a: UBERON:0000982 ! skeletal joint id: UBERON:0011966 name: manubriosternal joint def: "The early union, by hyaline cartilage, of the manubrium and the body of the sternum, which later becomes a symphysial type of joint." [http://www.medilexicon.com/medicaldictionary.php?t=46395, Wikipedia:Sternal_angle] +subset: human_subset +subset: mouse_subset synonym: "angle of louis" RELATED [Wikipedia:Sternal_angle] synonym: "angulus ludovici" RELATED [Wikipedia:Sternal_angle] synonym: "angulus sternalis" RELATED [Wikipedia:Sternal_angle] @@ -319693,6 +333355,8 @@ relationship: connects UBERON:0006820 ! body of sternum id: UBERON:0011967 name: costotransverse joint def: "The facet of the tubercle of the rib forms an articulation with the adjacent transverse process of a thoracic vertebra. This is a plane type synovial joint called the costotransverse joint. This articulation is present in all but the eleventh and twelfth ribs. Ribs 1 to 10 have two joints in close proximity posteriorly; the costovertebral joints and the costotranseverse joints. This arrangement restrains the motion of the ribs allowing them to work in a parallel fashion during breathing. If a typical rib had only one joint posteriorly the resultant swivel action would allow a rib to be non-parallel with respect to the neighboring ribs making for a very inefficient respiratory mechanism. The ventral rami innervate the costotransverse joints. Therefore, therapeutic medial branch blocks are ineffectual. The ligaments of the joint are: Articular capsule Posterior costotransverse Anterior costotransverse Ligament of the neck of the rib Ligament of the tubercle of the rib." [Wikipedia:Costotransverse_joint] +subset: human_subset +subset: mouse_subset synonym: "costotransverse articulation" RELATED [Wikipedia:Costotransverse_joint] xref: FMA:7952 xref: SCTID:263328007 @@ -319704,6 +333368,8 @@ relationship: part_of UBERON:0003252 {source="FMA"} ! thoracic rib cage id: UBERON:0011968 name: radio-carpal joint def: "A skeletal joint that connects a radius bone and connects a carpal skeleton." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "articulatio radiocarpea" EXACT OMO:0003011 [Wikipedia:Wrist] synonym: "radiocarpal articulation" EXACT [Wikipedia:Wrist] synonym: "radiocarpal joint" EXACT [] @@ -319724,6 +333390,8 @@ id: UBERON:0011969 name: mesotarsal joint def: "An ankle joint that passes between the proximal and distal tarsals." [http://palaeos.com/vertebrates/glossary/glossaryM.html] comment: Calcaneus and astragalus are interlocked, line of flexion is distal to them[Kardong] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001487 ! pes joint is_a: UBERON:0011980 ! crurotarsal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -319737,6 +333405,8 @@ relationship: part_of UBERON:0004454 ! tarsal region id: UBERON:0011970 name: talofibular ligament def: "A skeletal ligament that connects the fibula to the talus. Examples: anterior and posterior talofibular ligament." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "ligamentum talofibulare" EXACT OMO:0003011 [Wikipedia:Talofibular_ligament] synonym: "talo-fibular ligament" EXACT [] xref: FMA:44080 @@ -319756,6 +333426,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/b/bf/A id: UBERON:0011971 name: calcaneofibular ligament def: "A skeletal ligament that connects the fibula to the calcaneus." [Wikipedia:Calcaneofibular_ligament] +subset: human_subset +subset: mouse_subset synonym: "ligamentum calcaneofibulare" EXACT OMO:0003011 [Wikipedia:Calcaneofibular_ligament] xref: FMA:44089 xref: SCTID:244650001 @@ -319775,6 +333447,8 @@ property_value: taxon_notes "In humans, it is a narrow, rounded cord, running fr id: UBERON:0011972 name: medial ligament of ankle joint def: "A skeletal ligament that connects a tibia and connects a tarsal skeleton." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "deltoid collateral ligament of ankle joint" EXACT [FMA:44055] synonym: "deltoid ligament of ankle joint" EXACT [FMA:44055] synonym: "ligamentum collaterale mediale (articulatio talocruralis)" EXACT [FMA:44055] @@ -319796,6 +333470,8 @@ relationship: part_of UBERON:0001488 ! ankle joint id: UBERON:0011973 name: epiphysis of phalanx of pes def: "An epiphysis that is part of a phalanx of a pes [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epiphysis of phalanx of toe" EXACT [] xref: SCTID:314621001 is_a: UBERON:0001437 ! epiphysis @@ -319807,6 +333483,8 @@ relationship: part_of UBERON:0002387 ! pes id: UBERON:0011974 name: epiphysis of proximal phalanx of pes def: "An epiphysis that is part of a proximal phalanx of pes." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epiphysis of proximal phalanx of toe" EXACT [] xref: SCTID:280047006 is_a: UBERON:0004446 ! epiphysis of phalanx @@ -319819,6 +333497,8 @@ relationship: part_of UBERON:0003868 ! proximal phalanx of pes id: UBERON:0011975 name: epiphysis of middle phalanx of pes def: "An epiphysis that is part of a middle phalanx of pes." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epiphysis of middle phalanx of toe" EXACT [] xref: SCTID:280048001 is_a: UBERON:0004446 ! epiphysis of phalanx @@ -319831,6 +333511,8 @@ relationship: part_of UBERON:0003866 ! middle phalanx of pes id: UBERON:0011976 name: epiphysis of distal phalanx of pes def: "An epiphysis that is part of a distal phalanx of pes." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epiphysis of distal phalanx of toe" EXACT [] xref: SCTID:280049009 is_a: UBERON:0004446 ! epiphysis of phalanx @@ -319843,6 +333525,8 @@ relationship: part_of UBERON:0003867 ! distal phalanx of pes id: UBERON:0011977 name: epiphysis of proximal phalanx of manus def: "An epiphysis that is part of a proximal phalanx of manus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epiphysis of proximal phalanx of finger" EXACT [] xref: SCTID:280044004 @@ -319855,6 +333539,8 @@ relationship: part_of UBERON:0002234 ! proximal phalanx of manus id: UBERON:0011978 name: epiphysis of middle phalanx of manus def: "An epiphysis that is part of a middle phalanx of manus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epiphysis of middle phalanx of finger" EXACT [] xref: SCTID:280045003 is_a: UBERON:0004387 ! epiphysis of phalanx of manus @@ -319866,6 +333552,8 @@ relationship: part_of UBERON:0003864 ! middle phalanx of manus id: UBERON:0011979 name: epiphysis of distal phalanx of manus def: "An epiphysis that is part of a distal phalanx of manus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epiphysis of distal phalanx of finger" EXACT [] xref: FMA:321561 xref: SCTID:280046002 @@ -319879,6 +333567,8 @@ id: UBERON:0011980 name: crurotarsal joint def: "A joint that connects the bones of the crus to the proximal tarsal bones." [Wikipedia:Crurotarsal] comment: line of flexion between calcaneus and astragalus +subset: human_subset +subset: mouse_subset synonym: "crurotarsal" RELATED [] xref: Wikipedia:Crurotarsal is_a: UBERON:0001488 ! ankle joint @@ -319893,6 +333583,8 @@ property_value: external_definition "an ankle joint that passes between the astr id: UBERON:0011981 name: manual digit 6 comment: Found in Acanthostega +subset: human_subset +subset: mouse_subset synonym: "6th finger" EXACT [] synonym: "fore digit VI" EXACT [] synonym: "fore limb digit 6" EXACT [OBOL:accepted] @@ -319910,6 +333602,8 @@ property_value: ray_number "6" xsd:nonNegativeInteger id: UBERON:0011982 name: manual digit 7 comment: Found in Acanthostega +subset: human_subset +subset: mouse_subset synonym: "fore digit VII" EXACT [] synonym: "fore limb digit 7" EXACT [OBOL:accepted] synonym: "hand digit 7" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] @@ -319926,6 +333620,8 @@ property_value: ray_number "7" xsd:nonNegativeInteger id: UBERON:0011983 name: manual digit 8 comment: Found in Acanthostega +subset: human_subset +subset: mouse_subset synonym: "eighth finger" EXACT [] synonym: "fore digit VIII" EXACT [] synonym: "fore limb digit 8" EXACT [OBOL:accepted] @@ -319941,6 +333637,8 @@ property_value: ray_number "8" xsd:nonNegativeInteger [Term] id: UBERON:0011984 name: pedal digit 6 +subset: human_subset +subset: mouse_subset synonym: "digitus sextus pedis" EXACT OMO:0003011 [] synonym: "foot digit 6" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind digit 6" EXACT [] @@ -319977,6 +333675,8 @@ relationship: adjacent_to UBERON:0011985 ! infraorbital sinus [Term] id: UBERON:0011996 name: pharyngeal adductor +subset: human_subset +subset: mouse_subset synonym: "adductors" RELATED OMO:0003004 [ZFA:0000463] xref: TAO:0000463 xref: ZFA:0000463 @@ -319986,6 +333686,8 @@ is_a: UBERON:0000933 {source="ZFA"} ! chordate pharyngeal muscle id: UBERON:0011997 name: coelom def: "The aggregate of the coelemic cavity lumen plus the membranes that line the lumen." [UBERON:cjm, Wikipedia:Body_cavity, Wikipedia:Coelom] +subset: human_subset +subset: mouse_subset synonym: "coelem" RELATED [] synonym: "coelomic cavity" RELATED [EHDAA2:0004731] synonym: "enterocoelom" NARROW [NCBITaxon:33511] @@ -319993,6 +333695,7 @@ synonym: "haemocoelom" NARROW [] synonym: "schizocoelom" NARROW [] xref: EHDAA2:0004731 xref: Wikipedia:Coelom +xref: ZFA:0001438 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure relationship: in_taxon NCBITaxon:33213 ! Bilateria relationship: never_in_taxon NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"} ! Acoelomorpha @@ -320004,6 +333707,8 @@ property_value: has_relational_adjective "coelomic" xsd:string id: UBERON:0012054 name: myocoele def: "The cavity within a myotome." [http://medical-dictionary.thefreedictionary.com/myocoele] +subset: human_subset +subset: mouse_subset xref: EMAPA:31134 xref: VHOG:0001283 is_a: UBERON:0002553 ! anatomical cavity @@ -320018,6 +333723,7 @@ id: UBERON:0012055 name: left lung lower lobe bronchiole def: "A bronchiole that is part of a lower lobe of left lung." [OBOL:automatic] comment: Mouse has single left lobe +subset: human_subset synonym: "bronchiole of left lower lobe" EXACT [] synonym: "bronchiole of left lower lobe of lung" EXACT [] synonym: "left lung caudal lobe bronchiole" EXACT [EHDAA2:0000947] @@ -320033,6 +333739,7 @@ id: UBERON:0012056 name: left lung upper lobe bronchiole def: "A bronchiole that is part of a upper lobe of left lung." [OBOL:automatic] comment: Mouse has single left lobe +subset: human_subset synonym: "bronchiole of left cranial lobe" EXACT [] synonym: "bronchiole of left upper lobe" EXACT [] synonym: "bronchiole of left upper lobe of lung" EXACT [] @@ -320048,6 +333755,8 @@ relationship: part_of UBERON:0008952 ! upper lobe of left lung id: UBERON:0012059 name: right lung lower lobe bronchiole def: "A bronchiole that is part of a lower lobe of right lung." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchiole of right cranial lobe" EXACT [] synonym: "bronchiole of right lower lobe" EXACT [] synonym: "bronchiole of right lower lobe of lung" EXACT [] @@ -320065,6 +333774,8 @@ relationship: part_of UBERON:0002171 ! lower lobe of right lung id: UBERON:0012063 name: lobar bronchus of right lung middle lobe def: "A lobar bronchus that is part of a middle lobe of right lung." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchus of right middle lobe" EXACT [FMA:7401] synonym: "middle lobar bronchus" EXACT [FMA:7401] synonym: "middle lobe bronchus" EXACT [FMA:7401] @@ -320079,6 +333790,7 @@ relationship: part_of UBERON:0002174 ! middle lobe of right lung id: UBERON:0012065 name: lobar bronchus of left lung upper lobe def: "A lobar bronchus that is part of a upper lobe of left lung." [OBOL:automatic] +subset: human_subset synonym: "bronchus of left upper lobe" EXACT [FMA:7423] synonym: "left superior lobar bronchus" EXACT [FMA:7423] synonym: "left upper lobar bronchus" EXACT [FMA:7423] @@ -320095,6 +333807,7 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l id: UBERON:0012066 name: lobar bronchus of left lung lower lobe def: "A lobar bronchus that is part of a lower lobe of left lung." [OBOL:automatic] +subset: human_subset synonym: "bronchus of left lower lobe" EXACT [FMA:7432] synonym: "left inferior lobar bronchus" EXACT [FMA:7432] synonym: "left lower lobar bronchus" EXACT [FMA:7432] @@ -320113,6 +333826,8 @@ id: UBERON:0012067 name: primary bronchiole def: "A bronchiole that arises from a segmental bronchus and does not contain cartilage." [ISBN:0123813611, Wikipedia:Bronchiole#Primary_bronchioles] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "proximal bronchiole" EXACT [FMA:62510] xref: FMA:62510 xref: Wikipedia:Bronchiole#Primary_bronchioles @@ -320125,6 +333840,8 @@ relationship: proximally_connected_to UBERON:0002184 ! segmental bronchus id: UBERON:0012068 name: right lung middle lobe bronchiole def: "A bronchiole that is part of a middle lobe of right lung." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchiole of middle right lobe" EXACT [] synonym: "bronchiole of right middle lobe" EXACT [] synonym: "bronchiole of right middle lobe of lung" EXACT [] @@ -320138,6 +333855,8 @@ relationship: part_of UBERON:0002174 ! middle lobe of right lung [Term] id: UBERON:0012069 name: epithelium-associated lymphoid tissue +subset: human_subset +subset: mouse_subset xref: FMA:62811 is_a: UBERON:0001744 {source="FMA"} ! lymphoid tissue @@ -320145,6 +333864,8 @@ is_a: UBERON:0001744 {source="FMA"} ! lymphoid tissue id: UBERON:0012070 name: palatal tooth def: "A tooth that is on the roof of the mouth." [http://palaeos.com/vertebrates/therapsida/anteosauria.html] +subset: human_subset +subset: mouse_subset synonym: "palatal teeth" EXACT OMO:0003004 [] is_a: UBERON:0003267 ! tooth of upper jaw intersection_of: UBERON:0001091 ! calcareous tooth @@ -320156,6 +333877,8 @@ relationship: part_of UBERON:0009680 ! set of upper jaw teeth id: UBERON:0012071 name: palate bone def: "Any bone that is part of a palate." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "palatal bone" EXACT [] xref: EMAPA:37930 {source="MA:th"} @@ -320172,6 +333895,8 @@ property_value: curator_notes "this is distinct (but not disjoint) from palatine [Term] id: UBERON:0012072 name: palatal part of dermatocranium +subset: human_subset +subset: mouse_subset synonym: "dermatocranium, palatal series" RELATED [ISBN:0073040584] synonym: "palatal series" RELATED [ISBN:0073040584] is_a: UBERON:0000075 ! subdivision of skeletal system @@ -320182,6 +333907,8 @@ relationship: part_of UBERON:0007375 ! roof of mouth id: UBERON:0012073 name: tooth of palatine bone def: "A tooth that is attached to a palatine bone." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "palatine teeth" EXACT OMO:0003004 [] synonym: "palatine tooth" EXACT [] is_a: UBERON:0012070 ! palatal tooth @@ -320194,6 +333921,8 @@ property_value: external_definition "Teeth present in some fishes on the palatin id: UBERON:0012074 name: bony part of hard palate def: "A subdivision of skeletal system that subdivision_of a hard palate." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bony palate" EXACT [FMA:59857] synonym: "hard palate skeleton" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -320212,6 +333941,8 @@ relationship: subdivision_of UBERON:0003216 ! hard palate id: UBERON:0012075 name: replacement bone def: "Bone that forms as a replacement of another structural tissue." [ZFA:0001628] +subset: human_subset +subset: mouse_subset synonym: "replacement bones" EXACT OMO:0003004 [ZFA:0001628] xref: AAO:0010768 xref: TAO:0001637 @@ -320225,6 +333956,8 @@ property_value: external_ontology_notes "This class was introduced to be consist id: UBERON:0012076 name: tibiotalar joint def: "A skeletal joint that connects a tibia and connects a talus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ankle joint" BROAD [Wikipedia:Ankle] synonym: "talotibial joint" NARROW [Wikipedia:Ankle] synonym: "tibioastragalar joint" NARROW [Wikipedia:Ankle] @@ -320241,6 +333974,8 @@ property_value: external_ontology_notes "see also FMA:44063 ! tibiotalar part of id: UBERON:0012078 name: fovea capitis of femur def: "The surface of the head of the femur is smooth, coated with cartilage in the fresh state, except over an ovoid depression, the fovea of head of femur, which is situated a little below and behind the center of the head, and gives attachment to the ligamentum teres." [Wikipedia:Fovea_of_head_of_femur] +subset: human_subset +subset: mouse_subset synonym: "fovea capitis" BROAD [Wikipedia:Fovea_of_head_of_femur] synonym: "fovea capitis femoris" EXACT OMO:0003011 [Wikipedia:Fovea_of_head_of_femur] synonym: "fovea capitis femoris (caput femoris)" EXACT [FMA:43700] @@ -320259,6 +333994,8 @@ id: UBERON:0012079 name: metapterygial axis def: "Proximodistal trajectory through a metapterygium[Wagner]." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/128] comment: persisted in sacropterygians, precursor to limb axis +subset: human_subset +subset: mouse_subset is_a: UBERON:0006800 ! anatomical line relationship: in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0000026 ! appendage @@ -320267,6 +334004,8 @@ relationship: part_of UBERON:0000026 ! appendage id: UBERON:0012080 name: patella cartilage element def: "A cartilaginous condensation that has the potential to develop into a patella." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:19140 is_a: UBERON:0003860 ! hindlimb mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure @@ -320283,6 +334022,8 @@ property_value: editor_note "Note some sources have this as intramembranous" xsd id: UBERON:0012081 name: patella pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a patella." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:18510 is_a: UBERON:0003321 ! mesenchyme of knee is_a: UBERON:0004120 ! mesoderm-derived structure @@ -320297,6 +334038,8 @@ relationship: part_of UBERON:0006256 {source="EMAPA"} ! knee joint primordium id: UBERON:0012082 name: bronchial lumen def: "An anatomical cavity that is part of a bronchus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bronchial lumen" EXACT [FMA:62646] synonym: "lumen of bronchus" EXACT [FMA:62646] xref: FMA:62646 @@ -320311,6 +334054,8 @@ relationship: part_of UBERON:0002185 {source="FMA"} ! bronchus id: UBERON:0012083 name: lumen of primary bronchus def: "An anatomical cavity that is part of a main bronchus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lumen of main bronchus" EXACT [FMA:13116] synonym: "main bronchial lumen" EXACT [FMA:13116] synonym: "principal bronchial lumen" EXACT [] @@ -320325,6 +334070,8 @@ relationship: part_of UBERON:0002182 ! main bronchus id: UBERON:0012084 name: lumen of secondary bronchus def: "An anatomical cavity that is part of a lobar bronchus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lobar bronchial lumen" EXACT [FMA:62520] synonym: "lumen of lobar bronchus" EXACT [FMA:62520] synonym: "secondary bronchial lumen" EXACT [] @@ -320339,6 +334086,8 @@ relationship: part_of UBERON:0002183 ! lobar bronchus id: UBERON:0012085 name: lumen of tertiary bronchus def: "An anatomical cavity that is part of a segmental bronchus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lumen of segmental bronchus" EXACT [FMA:62593] synonym: "segmental bronchial lumen" EXACT [FMA:62593] xref: FMA:62593 @@ -320391,6 +334140,8 @@ relationship: in_taxon NCBITaxon:8782 ! Aves id: UBERON:0012101 name: perinatal stage def: "The period spanning the range immediately before and after birth." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "paranatal stage" NARROW [] is_a: UBERON:0000105 ! life cycle stage relationship: overlaps UBERON:0000068 ! embryo stage @@ -320401,6 +334152,8 @@ property_value: taxon_notes "In birds, the paranatal stage starts when the beak id: UBERON:0012102 name: buccal salivary gland def: "A salivary gland that is part of a cheek." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:59793 xref: NCIT:C32237 is_a: UBERON:0001044 ! saliva-secreting gland @@ -320413,6 +334166,8 @@ id: UBERON:0012103 name: suspensory ligament of breast def: "Cooper's ligaments (also known as the suspensory ligaments of Cooper and the fibrocollagenous septa) are connective tissue in the breast that helps maintain structural integrity. Transmission diffraction tomography can reveal the anatomy. Cooper's Suspensory Ligament should not be confused with the pectineal ligament (sometimes called the inguinal ligament of Cooper) which shares the same eponym." [Wikipedia:Cooper%27s_ligaments] comment: Connects skin of mammary gland with deep fascia +subset: human_subset +subset: mouse_subset synonym: "Cooper's ligament" RELATED [Wikipedia:Cooper%27s_ligaments] synonym: "ligament of Cooper" RELATED [Wikipedia:Cooper%27s_ligaments] synonym: "retinaculum cutis mammae" EXACT [FMA:TA] @@ -320433,6 +334188,7 @@ relationship: part_of UBERON:0005200 ! thoracic mammary gland id: UBERON:0012104 name: sesamoid bone of the peroneus longus muscle comment: a coffee bean-shaped constant, large and regular bone. The lateral surface of the bone is convex in all directions and non-articular. The medial surface is covered with hyaline cartilage and articulates by means of a synovial joint with the corresponding facet of the cuboid bone. The histological structure and the mode of ossification of the os peroneum are identical to that of other short bones of the skeleton. +subset: human_subset synonym: "os peroneum" EXACT [PMCID:PMC1261702] is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0004251 ! hindlimb zeugopod bone @@ -320470,11 +334226,13 @@ relationship: part_of UBERON:0012105 ! baleen plate id: UBERON:0012108 name: postorbital bar def: "A strut formed from the union of the zygomatic process of the frontal bone with the frontal process of the zygomatic bone." [MURDOCH:1580, Wikipedia:Postorbital_Bar] +subset: human_subset +subset: mouse_subset synonym: "post-orbital bar" EXACT [] xref: Wikipedia:Postorbital_Bar is_a: UBERON:0005913 ! zone of bone organ -relationship: derived_from_ancestral_fusion_of UBERON:0012109 ! zygomatic process of frontal bone -relationship: derived_from_ancestral_fusion_of UBERON:0012110 ! frontal process of zygomatic bone +relationship: has_fused_element UBERON:0012109 ! zygomatic process of frontal bone +relationship: has_fused_element UBERON:0012110 ! frontal process of zygomatic bone relationship: in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0003113 {notes="orbital series"} ! dermatocranium @@ -320483,6 +334241,8 @@ id: UBERON:0012109 name: zygomatic process of frontal bone def: "The part of the zygomatic process consisting of the frontal bone[WP]." [Wikipedia:Zygomatic_process_of_frontal_bone] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "frontal bone - zygomatic process" EXACT [] synonym: "processus zygomaticus (os frontale)" EXACT [FMA:54389] synonym: "processus zygomaticus ossis frontalis" EXACT OMO:0003011 [Wikipedia:Zygomatic_process_of_frontal_bone] @@ -320501,6 +334261,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012110 name: frontal process of zygomatic bone subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "processus frontalis (os zygomaticum)" EXACT [FMA:52907] synonym: "processus frontalis ossis zygomatici" EXACT OMO:0003011 [FMA:52907, FMA:TA] synonym: "zygomatic bone - frontal process" EXACT [] @@ -320519,6 +334281,8 @@ name: diastema alt_id: UBERON:0013134 def: "A space or gap between two teeth." [UBERON:cjm, Wikipedia:Diastema_(dentistry)] comment: Some animals, like horses, that have diastema between incisors and premolars because canines were evolutionarily loss, sometimes have a vestigial canine in the diastema, but the diastema is still considered between the incisor and premolar. +subset: human_subset +subset: mouse_subset synonym: "diastemata" RELATED OMO:0003004 [] synonym: "interdental space" EXACT [] xref: FMA:77271 @@ -320536,6 +334300,8 @@ property_value: taxon_notes "Many species of mammals have diastemata as a normal id: UBERON:0012112 name: ingested food def: "A substance that is consumed by the organism for food." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: FMA:62964 is_a: UBERON:0000463 {source="FMA"} ! organism substance relationship: in_taxon NCBITaxon:6072 ! Eumetazoa @@ -320546,6 +334312,8 @@ property_value: external_ontology_notes "FMA def restricts this to 'oral cavity, id: UBERON:0012113 name: bolus of food def: "Ingested food has been chewed at the point of swallowing." [Wikipedia:Bolus_(digestion)] +subset: human_subset +subset: mouse_subset synonym: "bolus" BROAD [] synonym: "bolus of ingested food" EXACT [FMA:78441] synonym: "food bolus" EXACT [FMA:78441] @@ -320578,6 +334346,8 @@ relationship: output_of GO:0036147 ! rumination id: UBERON:0012115 name: dental comb def: "A dental structure found in some mammals, comprising a group of front teeth arranged in a manner that facilitates grooming." [Wikipedia:Toothcomb] +subset: human_subset +subset: mouse_subset synonym: "tooth comb" EXACT [Wikipedia:Toothcomb] synonym: "toothcomb" EXACT [Wikipedia:Toothcomb] xref: Wikipedia:Toothcomb @@ -320589,6 +334359,8 @@ property_value: taxon_notes "The toothcomb occurs in lemuriform primates (which id: UBERON:0012116 name: nutrient foramen conduit def: "Any of the passages admitting nutrient vessels to the medullary cavity of bone." [http://medical-dictionary.thefreedictionary.com/nutrient+foramen] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005744 ! bone foramen relationship: conduit_for UBERON:0010175 ! nutrient foramen vein relationship: conduit_for UBERON:0010176 ! nutrient foramen artery @@ -320600,6 +334372,8 @@ relationship: part_of UBERON:0001474 ! bone element id: UBERON:0012117 name: lumen of nutrient foramen def: "An anatomical space that is part of a nutrient foramen conduit, leading to the medullary cavity of the bone." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "nutrient foramen" EXACT [FMA:75304] synonym: "nutrient foramina" EXACT OMO:0003004 [] xref: FMA:75304 @@ -320615,6 +334389,8 @@ relationship: part_of UBERON:0012116 ! nutrient foramen conduit id: UBERON:0012118 name: infraspinatus tendon def: "The infraspinatus muscle inserts at this tendon to the distal greater tubercle of the humerus. This tendon stretches across the shoulder joint to attach to the humerus and in doing so acts as a very strong ligament to hold the joint surface in apposition. This structure restricts the movement of the shoulder joint to flexion and extension (together with the suscapularis tendon and the supraspinatus tendon). A bursa lies under this tendon at the greater tubercle of the humerus. The bursa is lined by a synovial membrance and filled with synovial fluid and protects the infraspinatus tendon and the shoulder joint by allowing the transmissions of tension and sheer forces around an angle." [MURDOCH:963] +subset: human_subset +subset: mouse_subset synonym: "tendon of infraspinatus muscle" EXACT [FMA:37076] xref: FMA:37076 is_a: UBERON:0000043 ! tendon @@ -320639,6 +334415,8 @@ relationship: part_of UBERON:0000024 ! forelimb wing id: UBERON:0012120 name: vinculum of tendon def: "A tendinous band that connects the phalanges and the flexor muscles of the autopods." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Vincula_tendina] +subset: human_subset +subset: mouse_subset synonym: "tendon vinculum" EXACT [FMA:42604] xref: FMA:42604 xref: SCTID:360764006 @@ -320664,6 +334442,8 @@ property_value: taxon_notes "this is restricted to hagfishes; structure with sam id: UBERON:0012124 name: avian scapholunar bone comment: May correspond to radiale[Origin and evolution of birds, Feduccia] +subset: human_subset +subset: mouse_subset synonym: "radiale" RELATED [] synonym: "scapholunar" RELATED [] is_a: UBERON:0001480 ! proximal carpal bone @@ -320672,6 +334452,8 @@ is_a: UBERON:0001480 ! proximal carpal bone id: UBERON:0012125 name: dermatological-muscosal system def: "Anatomical system that consists of the integumental system plus all mucosae and submucosae." [https://github.com/obophenotype/uberon/issues/53] +subset: human_subset +subset: mouse_subset synonym: "dermatological system" RELATED [OBI:MC] is_a: UBERON:0000467 ! anatomical system relationship: existence_ends_during UBERON:0000066 ! fully formed stage @@ -320686,6 +334468,8 @@ property_value: dc:contributor https://github.com/mcourtot id: UBERON:0012126 name: fibulare def: "One of two elements that constitute the basal row of tarsals. The fibulare constitutes the preaxial element[AAO]." [AAO:0000913] +subset: human_subset +subset: mouse_subset synonym: "astragalus" RELATED [AAO:0000913] xref: AAO:0000913 is_a: UBERON:0002513 {notes="editor note: add cartilage precursors and infer this", source="AAO"} ! endochondral bone @@ -320713,6 +334497,8 @@ relationship: part_of UBERON:0008295 ! feather barbule id: UBERON:0012128 name: nose tip def: "Outermost point on an external nose or snout." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/109] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "apex nasi" EXACT OMO:0003011 [FMA:TA] synonym: "apex of nose" EXACT [FMA:59518] @@ -320732,6 +334518,8 @@ property_value: dc:contributor https://github.com/cmungall id: UBERON:0012129 name: radial head of humerus def: "Hemispherical ball located at the lower end of the humerus that stands out prominently from the surrounding structures toward the flexor surface of the forelimb." [AAO:LAP, PHENOSCAPE:curators] +subset: human_subset +subset: mouse_subset synonym: "capitellum" RELATED [] synonym: "capitellum of humerus" EXACT [] synonym: "eminentia capitata" RELATED [AAO:0000838] @@ -320747,6 +334535,8 @@ property_value: external_definition "Hemispherical ball located at the lower end id: UBERON:0012130 name: olecranon fossa def: "A deep evacuation in the bone, into which the anconeal process of the ulna passes when the elbow joint is extended." [MURDOCH:894] +subset: human_subset +subset: mouse_subset synonym: "fossa olecrani" EXACT OMO:0003011 [Wikipedia:Olecranon_fossa] xref: FMA:23450 xref: Wikipedia:Olecranon_fossa @@ -320758,6 +334548,8 @@ relationship: part_of UBERON:0004404 ! distal epiphysis of humerus id: UBERON:0012131 name: centrale def: "Endochondral bone located between the proximal and distal rows of carpals or tarsals and thus representing the central carpals or tarsals[PHENOSCAPE]." [https://github.com/obophenotype/uberon/issues/124, PHENOSCAPE:AMAO] +subset: human_subset +subset: mouse_subset synonym: "central mesopodium bone" EXACT [] synonym: "centralia" RELATED OMO:0003004 [] synonym: "os centrale" EXACT [FMA:77232] @@ -320778,6 +334570,8 @@ property_value: external_ontology_notes "the FMA term is under 'general anatomic id: UBERON:0012132 name: intercuneiform joint def: "The intercuneiform articulations are articulations among the cuneiform bones[WP,unverified]." [Wikipedia:Intercuneiform_articulations] +subset: human_subset +subset: mouse_subset synonym: "cuneocuboid" RELATED [Wikipedia:Intercuneiform_articulations] synonym: "cuneocuboid articulation" RELATED [Wikipedia:Intercuneiform_articulations] synonym: "intercuneiform" RELATED [Wikipedia:Intercuneiform_articulations] @@ -320794,6 +334588,8 @@ property_value: terminology_notes "The term 'cuneocuboid articulation' is someti [Term] id: UBERON:0012133 name: lateral-intermediate intercuneiform joint +subset: human_subset +subset: mouse_subset xref: FMA:73223 is_a: UBERON:0012132 ! intercuneiform joint disjoint_from: UBERON:0012134 {source="lexical"} ! medial-intermediate intercuneiform joint @@ -320802,6 +334598,8 @@ property_value: editor_note "TODO - add connections" xsd:string [Term] id: UBERON:0012134 name: medial-intermediate intercuneiform joint +subset: human_subset +subset: mouse_subset xref: FMA:73222 is_a: UBERON:0012132 ! intercuneiform joint property_value: editor_note "TODO - add connections" xsd:string @@ -320810,6 +334608,8 @@ property_value: editor_note "TODO - add connections" xsd:string id: UBERON:0012135 name: prepollex skeleton comment: A prepollex does not contain phalanges nor does it articulate with a metacarpal. It articulates with elements of the carpal (wrist) skeleton[AAO:DB]. editor note: TODO add articulation relations +subset: human_subset +subset: mouse_subset synonym: "cartilago pre-pollicis" RELATED [AAO:0000852] synonym: "prepollex" BROAD [AAO:0000852] xref: AAO:0000852 @@ -320825,6 +334625,8 @@ relationship: skeleton_of UBERON:0005880 ! prepollex [Term] id: UBERON:0012136 name: prehallux +subset: human_subset +subset: mouse_subset is_a: UBERON:0005881 ! autopodial extension intersection_of: UBERON:0005881 ! autopodial extension intersection_of: has_skeleton UBERON:3000922 ! prehallux skeleton @@ -320835,6 +334637,8 @@ property_value: has_relational_adjective "prehallical" xsd:string [Term] id: UBERON:0012137 name: pedal digit 7 +subset: human_subset +subset: mouse_subset synonym: "foot digit 7" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind digit 7" EXACT [] synonym: "hind digit VII" EXACT [] @@ -320852,6 +334656,8 @@ property_value: ray_number "7" xsd:nonNegativeInteger [Term] id: UBERON:0012138 name: pedal digit 8 +subset: human_subset +subset: mouse_subset synonym: "digitus octus pedis" EXACT OMO:0003011 [] synonym: "eigth toe" EXACT [] synonym: "foot digit 8" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] @@ -320870,6 +334676,8 @@ property_value: ray_number "8" xsd:nonNegativeInteger [Term] id: UBERON:0012139 name: segment of autopod +subset: human_subset +subset: mouse_subset is_a: UBERON:0002529 {notes="may be revised"} ! limb segment relationship: part_of UBERON:0002470 ! autopod region @@ -320877,6 +334685,8 @@ relationship: part_of UBERON:0002470 ! autopod region id: UBERON:0012140 name: digitopodium region def: "A segment of the autopod consisting of both acropodial region and metapodial region, but excluding the mesopodial/basopodial region." [https://github.com/obophenotype/uberon/issues/131, PHENOSCAPE:ni] +subset: human_subset +subset: mouse_subset synonym: "acropodium (Wagner)" RELATED [] is_a: UBERON:0012139 ! segment of autopod intersection_of: UBERON:0012139 ! segment of autopod @@ -320890,6 +334700,8 @@ property_value: terminology_notes "some sources call this the acropodium. see ht id: UBERON:0012141 name: manual digitopodium region def: "A digitopodium region that is part of a manus[Obol]. This includes the fingers and metacarpal region, but excludes the carpal region." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005451 ! segment of manus is_a: UBERON:0012140 ! digitopodium region intersection_of: UBERON:0012140 ! digitopodium region @@ -320903,6 +334715,8 @@ property_value: terminology_notes "some sources call this the acropodium. see ht id: UBERON:0012142 name: pedal digitopodium region def: "A digitopodium region that is part of a pes[Obol]. This includes the toes and metatarsal region, but excludes the tarsals region." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005445 ! segment of pes is_a: UBERON:0012140 ! digitopodium region intersection_of: UBERON:0012140 ! digitopodium region @@ -320916,6 +334730,8 @@ property_value: terminology_notes "some sources call this the acropodium. see ht id: UBERON:0012150 name: skeleton of digitopodium def: "A subdivision of the autopod skeleton consisting of both acropodial skeleon and metapodial skeleton, but excluding the mesopodial/basopodial skeleton." [PHENOSCAPE:ni] +subset: human_subset +subset: mouse_subset synonym: "digitopodium" RELATED [PHENOSCAPE:ni] synonym: "skeleton of digits" RELATED COMPARATIVE_PREFERRED [] is_a: UBERON:0004120 ! mesoderm-derived structure @@ -320932,6 +334748,8 @@ property_value: terminology_notes "some sources call this the acropodium. see ht id: UBERON:0012151 name: skeleton of manual digitopodium def: "A subdivision of the manus skeleton consisting of both manual acropodial skeleton and metacarpal skeleton, but excluding the carpal skeleton." [https://orcid.org/0000-0002-6601-2165, PHENOSCAPE:ni] +subset: human_subset +subset: mouse_subset synonym: "manual digitopodium" RELATED [] is_a: UBERON:0012150 ! skeleton of digitopodium intersection_of: UBERON:0012150 ! skeleton of digitopodium @@ -320946,6 +334764,8 @@ property_value: terminology_notes "some sources call this the acropodium. see ht id: UBERON:0012152 name: skeleton of pedal digitopodium def: "A subdivision of the pes skeleton consisting of both pedal acropodial skeleton and metatarsal skeleton, but excluding the tarsal skeleton." [https://orcid.org/0000-0002-6601-2165, PHENOSCAPE:ni] +subset: human_subset +subset: mouse_subset synonym: "pedal digitopodium" RELATED [] is_a: UBERON:0012150 ! skeleton of digitopodium intersection_of: UBERON:0012150 ! skeleton of digitopodium @@ -320960,6 +334780,8 @@ property_value: terminology_notes "some sources call this the acropodium. see ht id: UBERON:0012167 name: buccal fat pad def: "The Buccal fat pad is one of several encapsulated fat masses in the cheek. It is a deep fat pad located on either side of the face between the buccinator muscle and several more superficial muscles. It should not be confused with the malar fat pad, which is directly below the skin of the cheek. It should also not be confused with jowl fat pads. It is implicated in the formation of hollow cheeks and the nasolabial fold, but not in the formation of jowls." [Wikipedia:Buccal_fat_pad] +subset: human_subset +subset: mouse_subset synonym: "Bichat's fat pad" EXACT [FMA:59799] synonym: "cheek fat pad" EXACT [] xref: FMA:59799 @@ -320977,6 +334799,8 @@ name: umbilical cord blood def: "Blood that remains in the placenta and in the attached umbilical cord after childbirth[WP]." [Wikipedia:Cord_blood] comment: Cord blood is collected because it contains stem cells, which can be used to treat hematopoietic and genetic disorders.[WP] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "cord blood" RELATED [BTO:0004053] synonym: "fetal blood" RELATED [MESH:A12.207.152.200] synonym: "umbilical cord blood" RELATED [MESH:A12.207.152.200] @@ -320995,6 +334819,8 @@ relationship: part_of UBERON:0000323 ! late embryo id: UBERON:0012170 name: core of nucleus accumbens subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "accumbens nucleus core" RELATED [BAMS:AcbC] synonym: "accumbens nucleus, core" RELATED [BAMS:AcbC] synonym: "core of nucleus accumbens" EXACT [NLXANAT:20090306] @@ -321017,6 +334843,8 @@ id: UBERON:0012171 name: shell of nucleus accumbens def: "Crescent shaped outer zone of the nucleus accumbens, defined by a combination of chemoarchitecture and afferent and efferent connections. The shell is distinguished from the more centrally located core through the notable reduction in staining for the calcium-binding protein calbindin D28K, which is dense in the core and virtually absent in the shell." [NLXANAT:20090307] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "accumbens nucleus shell" RELATED [BAMS:AcbSh] synonym: "accumbens nucleus, shell" RELATED [BAMS:AcbSh] synonym: "nucleus accumbens shell" EXACT [NLXANAT:20090307] @@ -321038,6 +334866,8 @@ id: UBERON:0012172 name: stomach primordium def: "A primordium that has the potential to develop into a stomach." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "stomach endoderm" RELATED [EFO:0002580] xref: EFO:0002580 xref: NCIT:C34305 @@ -321053,6 +334883,8 @@ id: UBERON:0012173 name: middle suprarenal artery def: "The middle suprarenal arteries (middle capsular arteries; suprarenal arteries) are two small vessels which arise, one from either side of the abdominal aorta, opposite the superior mesenteric artery. They pass laterally and slightly upward, over the crura of the diaphragm, to the suprarenal glands, where they anastomose with suprarenal branches of the inferior phrenic and renal arteries. In the fetus these arteries are of large size." [Wikipedia:Middle_suprarenal_arteries] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria suprarenalis media" RELATED OMO:0003011 [Wikipedia:Middle_suprarenal_arteries] synonym: "middle capsular artery" RELATED [Wikipedia:Middle_suprarenal_arteries] synonym: "middle suprarenal" RELATED [Wikipedia:Middle_suprarenal_arteries] @@ -321080,6 +334912,8 @@ consider: UBERON:0001927 [Term] id: UBERON:0012175 name: acoustico-facial VII-VIII ganglion complex +subset: human_subset +subset: mouse_subset synonym: "acousticofacial ganglion" EXACT [] synonym: "facio-acoustic ganglion" EXACT [] synonym: "facio-acoustic ganglion complex" RELATED [EMAPA:16794] @@ -321106,6 +334940,8 @@ id: UBERON:0012177 name: skin apocrine gland def: "An apocrine gland that is part of a skin of body." [OBOL:automatic] comment: Note that 'skin apocrine gland' does not cover 'apocrine sweat gland': in the former, "apocrine" refers to the type of secretion mechanism, while in the latter it refers to a structural feature. +subset: human_subset +subset: mouse_subset xref: MA:0000147 is_a: UBERON:0002419 {source="MA"} ! skin gland is_a: UBERON:0008974 ! apocrine gland @@ -321117,6 +334953,8 @@ relationship: part_of UBERON:0002097 ! skin of body [Term] id: UBERON:0012179 name: bone of pelvis +subset: human_subset +subset: mouse_subset xref: EMAPA:37249 {source="MA:th"} xref: MA:0000532 is_a: UBERON:0003828 {source="MA"} ! abdominal segment bone @@ -321128,6 +334966,8 @@ property_value: external_ontology_notes "in MA, this is the superclass of the 3 id: UBERON:0012180 name: head or neck skin def: "A zone of skin that is part of a craniocervical region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37276 {source="MA:th"} xref: MA:0000574 xref: NCIT:C12294 @@ -321142,6 +334982,8 @@ id: UBERON:0012181 name: tonsil crypt def: "Tonsils consist of an extensive system of crypts, which result in a large internal surface. The tonsils contain four lymphoid compartments that influence immune functions, namely the reticular crypt epithelium, the extrafollicular area, the mantle zones of lymphoid follicles, and the follicular germinal centers. In human palatine tonsils, the very first part exposed to the outside environment is tonsillar epithelium." [Wikipedia:Tonsillar_crypts] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cryptae tonsillares" EXACT OMO:0003011 [Wikipedia:Tonsillar_crypts] synonym: "tonsillar crypt" EXACT [FMA:55044] xref: FMA:55044 @@ -321168,6 +335010,8 @@ consider: NCIT:C33823 id: UBERON:0012186 name: ovary growing follicle def: "An ovarian follicle undergoing maturation." [ncithesaurus:Growing_Follicle] +subset: human_subset +subset: mouse_subset xref: EMAPA:35628 xref: MA:0001708 xref: NCIT:C32702 @@ -321179,6 +335023,8 @@ id: UBERON:0012187 name: frontal artery def: "The supratrochlear artery (or frontal artery), one of the terminal branches of the ophthalmic artery, branches off where the ophthalmic travels posterior to the trochlea." [Wikipedia:Supratrochlear_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "a supratrochlearis" RELATED [Wikipedia:Supratrochlear_artery] synonym: "frontal arteries" RELATED [Wikipedia:Supratrochlear_artery] synonym: "frontal artery" RELATED [Wikipedia:Supratrochlear_artery] @@ -321198,6 +335044,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012193 name: phrenic vein def: "The veins that run parallel to the phrenic arteries which include the two superior and two inferior phrenic veins." [ncithesaurus:Phrenic_Vein] +subset: human_subset +subset: mouse_subset xref: EMAPA:37180 {source="MA:th"} xref: MA:0002194 xref: NCIT:C53062 @@ -321213,6 +335061,8 @@ id: UBERON:0012194 name: superior intercostal vein def: "The superior intercostal veins are two veins that drain the 2nd, 3rd, and 4th intercostal spaces, one vein for each side of the body." [Wikipedia:Superior_intercostal_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:37193 {source="MA:th"} xref: MA:0002226 xref: NCIT:C33680 @@ -321226,6 +335076,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012195 name: left superior intercostal vein subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:4797 xref: SCTID:27297006 is_a: UBERON:0012194 ! superior intercostal vein @@ -321239,6 +335091,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012196 name: right superior intercostal vein subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:4877 xref: SCTID:80721005 is_a: UBERON:0012194 ! superior intercostal vein @@ -321253,6 +335107,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012197 name: intercostal vein def: "The intercostal veins are a group of veins which drain the area between the ribs." [Wikipedia:Intercostal_veins] +subset: human_subset +subset: mouse_subset xref: EMAPA:18762 xref: MA:0003166 xref: SCTID:281057004 @@ -321267,6 +335123,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0012198 name: intercostal space def: "A space in the rib cage between two successive ribs." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: FMA:12243 xref: SCTID:243937005 xref: Wikipedia:Intercostal_space @@ -321279,6 +335137,8 @@ id: UBERON:0012199 name: posterior intercostal vein def: "The posterior intercostal veins are veins that drain the intercostal spaces posteriorly. They run with their corresponding posterior intercostal artery on the underside of the rib, the vein superior to the artery. Each vein also gives off a dorsal branch that drains blood from the muscles of the back. There are eleven posterior intercostal veins on each side. Their patterns are variable, but they are commonly arranged as: The 1st posterior intercostal vein, supreme intercostal vein, drains into the brachiocephalic vein or the vertebral vein. The 2nd and 3rd (and often 4th) posterior intercostal veins drain into the superior intercostal vein. The remaining posterior intercostal veins drain into the azygos vein on the right, or the hemiazygos vein on the left." [Wikipedia:Posterior_intercostal_veins] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "venae intercostalis posterior" EXACT OMO:0003011 [FMA:4858] xref: FMA:4858 xref: SCTID:89209000 @@ -321293,6 +335153,8 @@ id: UBERON:0012200 name: anterior intercostal vein def: "The anterior intercostal veins are the veins which drain the anterior intercostal space." [Wikipedia:Anterior_intercostal_veins] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:12831 xref: SCTID:15546000 xref: Wikipedia:Anterior_intercostal_veins @@ -321304,6 +335166,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012236 name: intercostal lymph node def: "The intercostal lymph nodes (intercostal glands ) occupy the posterior parts of the intercostal spaces, in relation to the intercostal vessels. They receive the deep lymphatics from the postero-lateral aspect of the chest; some of these vessels are interrupted by small lateral intercostal glands." [Wikipedia:Intercostal_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "intercostal node" EXACT [FMA:5932] synonym: "nodi lymphoidei intercostales" EXACT [Wikipedia:Intercostal_lymph_nodes] synonym: "nodus intercostale" EXACT [FMA:5932] @@ -321322,6 +335186,8 @@ id: UBERON:0012237 name: superior phrenic vein def: "The superior phrenic vein, i.e. , the vein accompanying the pericardiacophrenic artery, usually opens into the internal mammary vein." [Wikipedia:Superior_phrenic_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:78121 xref: SCTID:198356008 xref: Wikipedia:Superior_phrenic_vein @@ -321333,6 +335199,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012238 name: ureteric bud trunk def: "Ureteric bud cells that elongate to form a rigid structure (stalk) consisting of polarized epithelial cells without branching; the stalks differentiate into the collecting system of the mature kidney, while the tip cells interact with the adjacent cells of the metanephric mesenchyme, inducing their conversion into nephrons." [MP:0011761] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ureteric bud stalk" RELATED [MP:0011761] synonym: "ureteric stalk" RELATED [EMAPA:27608] @@ -321350,6 +335218,8 @@ id: UBERON:0012239 name: urinary bladder vasculature def: "Network of tubes that carries blood through the distensible musculomembranous organ that serves to collect and store urine excreted by the kidneys[MP]." [MP:MP] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bladder vasculature" EXACT [] synonym: "blood vessel of bladder" RELATED [EMAPA:28679] @@ -321368,6 +335238,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012240 name: urethral meatus def: "External opening or orifice of the urethra through which urine and seminal fluid (in males only) leave the body; in males the meatus presents as a vertical slit normally positioned at the tip of glans penis; in females the meatus is located between the clitoris and the vagina in the vulvular vestibule of the female genitalia[MP]." [MP:MP, Wikipedia:Urinary_meatus] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "external meatus of urethra" EXACT [FMA:19650] synonym: "external urethral orifice" EXACT [FMA:19650] @@ -321396,6 +335268,8 @@ relationship: part_of UBERON:0000057 ! urethra id: UBERON:0012241 name: male urethral meatus def: "A urethral meatus that is part of a male urethra[Automatically generated definition]." [OBOL:automatic, Wikipedia:External_urethral_orifice_(male)] +subset: human_subset +subset: mouse_subset synonym: "distal urethral opening of male" RELATED [EMAPA:36434] synonym: "external orifice of male urethra" EXACT [FMA:85265] synonym: "external urethral orifice (male)" EXACT [FMA:85265] @@ -321421,6 +335295,8 @@ property_value: external_definition "The external urethral orifice is the extern id: UBERON:0012242 name: internal urethral orifice def: "The usually crescent-shaped opening of the urinary bladder into the urethra, placed at the anteroinferior angle (apex) of the urinary bladder trigone." [MGI:anna, MP:0011782] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "internal meatus of urethra" EXACT [FMA:85263] synonym: "internal urethral orifice of urinary bladder" EXACT [FMA:85263] @@ -321464,6 +335340,8 @@ relationship: part_of UBERON:0002102 ! forelimb id: UBERON:0012244 name: stratum intermedium of epidermis def: "A temporary layer between old and new skin that is invalided by white blood cells[Kardong]." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer relationship: part_of UBERON:0001003 {source="ISBN:0073040584"} ! skin epidermis @@ -321483,6 +335361,8 @@ relationship: in_taxon NCBITaxon:6656 ! Arthropoda id: UBERON:0012246 name: thyroid follicular lumen def: "A follicular lumen is the closed cavity within a follicle of the thyroid gland. It is surrounded by follicular cells and filled with colloid, a concentrated solution of thyroglobulin." [Wikipedia:Follicular_lumen] +subset: human_subset +subset: mouse_subset synonym: "follicular lumen" BROAD [Wikipedia:Follicular_lumen] synonym: "lumen of thyroid follicle" EXACT [FMA:68829] synonym: "thyroid follicle lumen" EXACT [FMA:68829] @@ -321501,6 +335381,8 @@ id: UBERON:0012247 name: cervical gland def: "Mucus-secreting glands in the mucosa of the uterine cervix." [http://www.thefreedictionary.com/cervical+glands] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "glandulae cervicales" EXACT [FMA:TA] xref: NCIT:C32296 xref: SCTID:280836000 @@ -321517,6 +335399,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012248 name: cervical mucosa def: "Lining of the head of the uterus (cervix); contains large branched glands; does not undergo sloughing." [BTO:0000411] +subset: human_subset +subset: mouse_subset xref: BTO:0000411 is_a: UBERON:0001295 ! endometrium intersection_of: UBERON:0000344 ! mucosa @@ -321529,6 +335413,8 @@ name: ectocervix alt_id: UBERON:0010182 def: "The part of the cervix uteri that protrudes into the vagina and is lined with stratified squamous epithelium." [BTO:0001850, Wikipedia:Vaginal_portion_of_cervix] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ectocervix" EXACT [BTO:0001850, FMA:86484] synonym: "exocervix" RELATED [BTO:0001850] synonym: "portio vaginalis" EXACT [Wikipedia:Vaginal_portion_of_cervix] @@ -321559,6 +335445,8 @@ id: UBERON:0012250 name: cervix glandular epithelium def: "A glandular epithelium that is part of a uterine cervix." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cervix columnar epithelium" RELATED [] xref: NCIT:C54414 xref: UMLS:C1707350 {source="ncithesaurus:Cervix_Columnar_Epithelium"} @@ -321574,6 +335462,8 @@ property_value: structure_notes "The 'glandular' or columnar epithelium of the c id: UBERON:0012251 name: ectocervical epithelium def: "An epithelium that is part of a ectocervix." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "exocervical epithelium" EXACT [] xref: SCTID:361376000 is_a: UBERON:0004801 ! cervix epithelium @@ -321586,6 +335476,8 @@ id: UBERON:0012252 name: endocervical epithelium def: "The glandular epithelium that lines the endocervix." [ncithesaurus:Endocervical_Glandular_Epithelium] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "endocervical glandular epithelium" EXACT [] xref: NCIT:C96180 xref: SCTID:362256006 @@ -321600,6 +335492,8 @@ id: UBERON:0012253 name: cervical squamo-columnar junction def: "Region of cervical epithelium where columnar epithelium of endocervic and the stratified non-keratinising squamous epithelium of the ectocervic meet." [http://www.asccp.org/practicemanagement/cervix/histologyofthenormalcervix/tabid/5842/default.aspx] comment: Site of 90% of lower genital tract neoplasia. This junction is presumed, but not proven, to be the embryologic junction of the Müllerian and urogenital sinus epithelia. +subset: human_subset +subset: mouse_subset synonym: "squamo-columnar junction of uterine cervix" EXACT [] synonym: "squamocolumnar junction" BROAD [] synonym: "squamocolumnar junction of uterine cervix" EXACT [] @@ -321618,6 +335512,8 @@ relationship: part_of UBERON:0000002 ! uterine cervix id: UBERON:0012254 name: abdominal aorta artery def: "An artery that originates from the abdominal aorta." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Abdominal_aorta#Branches] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "abdominal artery" EXACT [] synonym: "artery of abdomen" EXACT [] @@ -321633,6 +335529,8 @@ id: UBERON:0012255 name: inferior phrenic artery def: "The inferior phrenic arteries are two small vessels, which supply the diaphragm but present much variety in their origin. They may arise separately from the front of the aorta, immediately above the celiac artery, or by a common trunk, which may spring either from the aorta or from the celiac artery. Sometimes one is derived from the aorta, and the other from one of the renal arteries; they rarely arise as separate vessels from the aorta. They diverge from one another across the crura of the diaphragm, and then run obliquely upward and lateralward upon its under surface. The left phrenic passes behind the esophagus, and runs forward on the left side of the esophageal hiatus. The right phrenic passes behind the inferior vena cava, and along the right side of the foramen which transmits that vein. Near the back part of the central tendon each vessel divides into a medial and a lateral branch. The medial branch curves forward, and anastomoses with its fellow of the opposite side, and with the musculophrenic and pericardiacophrenic arteries. The lateral branch passes toward the side of the thorax, and anastomoses with the lower intercostal arteries, and with the musculophrenic. The lateral branch of the right phrenic gives off a few vessels to the inferior vena cava; and the left one, some branches to the esophagus. Each vessel gives off superior suprarenal branches to the suprarenal gland of its own side. The spleen and the liver also receive a few twigs from the left and right vessels respectively." [Wikipedia:Inferior_phrenic_arteries] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteriae phrenicae inferiores" EXACT OMO:0003011 [Wikipedia:Inferior_phrenic_artery] synonym: "inferior phrenic artery" RELATED [Wikipedia:Inferior_phrenic_arteries] xref: FMA:14734 @@ -321647,6 +335545,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/af/Gr [Term] id: UBERON:0012256 name: digestive syncytial vacuole +subset: human_subset +subset: mouse_subset is_a: UBERON:0005162 ! multi cell part structure relationship: has_part UBERON:0002553 ! anatomical cavity relationship: part_of CL:0000228 ! multinucleate cell @@ -321776,6 +335676,8 @@ property_value: editor_note "in future this class may be replaced by a more taxo id: UBERON:0012270 name: forestomach-glandular stomach junction def: "The distinct low fold of tissue that separates the non-glandular area of the stomach (forestomach) from the glandular stomach; the limiting ridge extends circumferentially from the large curvature of the stomach to the small curvature, just below the esophagus; at the esophagus, the course of the limiting ridge bends into a U-shape and almost surrounds the esophageal opening." [MGI:anna] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "forestomach - glandular stomach squamocolumnar junction" RELATED [] synonym: "limiting ridge of stomach" RELATED [MA:0003014] @@ -321795,6 +335697,8 @@ id: UBERON:0012271 name: major duodenal papilla def: "The common bile duct and the pancreatic duct together perforate the medial side of the second portion of the duodenum obliquely, some 7 to 10 cm below the pylorus, forming a structure called the major duodenal papilla. The accessory pancreatic duct sometimes pierces it about 2 cm above and slightly in front of these." [Wikipedia:Major_duodenal_papilla] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "greater duodenal papilla" EXACT [FMA:15074] synonym: "major papilla" RELATED [Wikipedia:Major_duodenal_papilla] synonym: "papilla duodeni major" RELATED OMO:0003011 [Wikipedia:Major_duodenal_papilla] @@ -321809,6 +335713,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012272 name: minor duodenal papilla def: "The minor duodenal papilla is the opening of the accessory pancreatic duct into the duodenum. It is sometimes absent, and often nonfunctional." [Wikipedia:Minor_duodenal_papilla] +subset: human_subset +subset: mouse_subset synonym: "lesser duodenal papilla" EXACT [FMA:15075] synonym: "minor papilla" RELATED [Wikipedia:Minor_duodenal_papilla] synonym: "Santorini's caruncle" EXACT [FMA:15075] @@ -321821,6 +335727,8 @@ is_a: UBERON:0004914 ! duodenal papilla [Term] id: UBERON:0012273 name: periampullary region of duodenum +subset: human_subset +subset: mouse_subset synonym: "periampullary region" EXACT [] xref: NCIT:C60699 xref: UMLS:C1882332 {source="ncithesaurus:Periampullary_Region"} @@ -321831,6 +335739,8 @@ relationship: part_of UBERON:0002114 ! duodenum id: UBERON:0012274 name: columnar epithelium def: "An epithelium that consists of columnar epithelial cells. Columnar epithelia are epithelial cells whose heights are at least four times their width. Columnar epithelia are divided into simple (or unilayered), and the rarer stratified (or multi-layered).[WP, modified]." [Wikipedia:Columnar_epithelium] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Columnar_epithelium is_a: UBERON:0000483 ! epithelium relationship: has_part CL:0000075 ! columnar/cuboidal epithelial cell @@ -321839,6 +335749,8 @@ relationship: has_part CL:0000075 ! columnar/cuboidal epithelial cell id: UBERON:0012275 name: meso-epithelium def: "Epithelium that derives from the mesoderm. [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesoderm-derived epithelium" EXACT [] synonym: "mesoepithelium" EXACT [] xref: FMA:86452 @@ -321852,6 +335764,8 @@ relationship: develops_from UBERON:0000926 ! mesoderm id: UBERON:0012276 name: endometrium glandular epithelium subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "glandular part of endometrium" EXACT [FMA:86488] synonym: "uterine glands" EXACT [] synonym: "uterine glands set" EXACT [] @@ -321871,6 +335785,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012278 name: gland of nasal mucosa def: "The nasal glands are the seromucous glands in the respiratory region of the nasal mucous membrane. The three major types of nasal glands are anterior serous glands, seromucous glands, and Bowman glands." [Wikipedia:Nasal_glands] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "glandula nasalis" EXACT OMO:0003011 [] synonym: "glandulae nasales" EXACT OMO:0003011 [] @@ -321895,6 +335811,8 @@ relationship: part_of UBERON:0002330 ! exocrine system id: UBERON:0012279 name: chromaffin paraganglion def: "Small bodies containing chromaffin cells occurring outside of the adrenal medulla, most commonly near the sympathetic ganglia and in organs such as the kidney, liver, heart and gonads." [MESH:A06.224.736, Wikipedia:Paraganglion] +subset: human_subset +subset: mouse_subset synonym: "chromaffin body" RELATED [MESH:A06.224.736] synonym: "chromaffin paraganglia" RELATED OMO:0003004 [MESH:A06.224.736] synonym: "chromaffin paraganglion" RELATED [MESH:A06.224.736] @@ -321912,6 +335830,7 @@ relationship: part_of UBERON:0010074 ! chromaffin system id: UBERON:0012281 name: perianal sebaceous gland def: "A holocrine gland that is part of the pilosebaceous unit of a hair located in the area around the anus." [ISBN:0123813611] +subset: mouse_subset subset: pheno_slim synonym: "circumanal gland" RELATED [MESH:A13.734] synonym: "perianal gland" RELATED [MESH:A13.734] @@ -321933,6 +335852,8 @@ relationship: part_of UBERON:0012336 ! perianal skin id: UBERON:0012282 name: mammary fat pad def: "Encapsulated adipose tissue associated with the mammary gland." [MGI:csmith] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37901 {source="MA:th"} is_a: UBERON:0003916 ! fat pad @@ -321945,6 +335866,8 @@ relationship: part_of UBERON:0001911 ! mammary gland id: UBERON:0012283 name: femoral fat pad def: "Encapsulated adipose tissue associated with the femur." [MP:0008905] +subset: human_subset +subset: mouse_subset synonym: "femoral fat depot" EXACT [MP:0008905] is_a: UBERON:0003916 ! fat pad is_a: UBERON:0004266 ! upper leg connective tissue @@ -321956,6 +335879,8 @@ relationship: part_of UBERON:0000376 ! hindlimb stylopod id: UBERON:0012284 name: animal hemisphere subset: early_development +subset: human_subset +subset: mouse_subset synonym: "animal pole" RELATED [] synonym: "animal pole of blastomere" NARROW [] synonym: "animal pole of zygote" NARROW [] @@ -321969,6 +335894,8 @@ property_value: structure_notes "The animal pole consists of small cells that di id: UBERON:0012285 name: vegetal hemisphere subset: early_development +subset: human_subset +subset: mouse_subset synonym: "vegetal pole" RELATED [] synonym: "vegetal pole of blastomere" NARROW [] synonym: "vegetal pole of zygote" NARROW [] @@ -321982,6 +335909,8 @@ id: UBERON:0012286 name: hemisphere of embryo def: "One of two hemispheres of the embryo at the zygote or blastula stage[WP,modified]." [https://github.com/obophenotype/uberon/issues/153, Wikipedia:Polarity_in_embryogenesis] subset: early_development +subset: human_subset +subset: mouse_subset synonym: "pole of embryo" RELATED [] xref: FMA:293351 xref: Wikipedia:Polarity_in_embryogenesis @@ -321996,6 +335925,8 @@ property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/5e/O id: UBERON:0012287 name: Rathkes pouch epithelium def: "An epithelial sac that is part of a Rathke's pouch." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001473 xref: EMAPA:25036 is_a: UBERON:0004906 ! ectodermal part of digestive tract @@ -322015,48 +335946,56 @@ property_value: editor_note "See https://github.com/obophenotype/uberon/issues/1 id: UBERON:0012288 name: centroquartal bone def: "A tarsal bone that is formed from the fusion of the central and 4th tarsal bones." [UBERON:skansa] +subset: human_subset +subset: mouse_subset synonym: "os centroquartale" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] synonym: "os naviculocuboideum" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] is_a: UBERON:0001447 ! tarsal bone intersection_of: UBERON:0001447 ! tarsal bone -intersection_of: derived_from_ancestral_fusion_of UBERON:0001451 ! navicular bone of pes -intersection_of: derived_from_ancestral_fusion_of UBERON:0010737 ! distal tarsal bone 4 -relationship: derived_from_ancestral_fusion_of UBERON:0001451 ! navicular bone of pes -relationship: derived_from_ancestral_fusion_of UBERON:0010737 ! distal tarsal bone 4 +intersection_of: has_fused_element UBERON:0001451 ! navicular bone of pes +intersection_of: has_fused_element UBERON:0010737 ! distal tarsal bone 4 +relationship: has_fused_element UBERON:0001451 ! navicular bone of pes +relationship: has_fused_element UBERON:0010737 ! distal tarsal bone 4 [Term] id: UBERON:0012289 name: fused tarsal bones 2 and 3 def: "A tarsal bone that is formed from the fusion of the 2nd and 3rd tarsal bones." [UBERON:skansa] +subset: human_subset +subset: mouse_subset synonym: "fused tarsals 2 and 3" EXACT [] synonym: "os cuneiforme intermediolaterale" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] synonym: "os tarsale II et III" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] synonym: "tarsals 2+3" RELATED [] is_a: UBERON:0010721 ! distal tarsal bone intersection_of: UBERON:0001447 ! tarsal bone -intersection_of: derived_from_ancestral_fusion_of UBERON:0001453 ! distal tarsal bone 2 -intersection_of: derived_from_ancestral_fusion_of UBERON:0001454 ! distal tarsal bone 3 -relationship: derived_from_ancestral_fusion_of UBERON:0001453 ! distal tarsal bone 2 -relationship: derived_from_ancestral_fusion_of UBERON:0001454 ! distal tarsal bone 3 +intersection_of: has_fused_element UBERON:0001453 ! distal tarsal bone 2 +intersection_of: has_fused_element UBERON:0001454 ! distal tarsal bone 3 +relationship: has_fused_element UBERON:0001453 ! distal tarsal bone 2 +relationship: has_fused_element UBERON:0001454 ! distal tarsal bone 3 [Term] id: UBERON:0012290 name: fused carpal bones 2 and 3 def: "A carpal bone that is formed from the fusion of the 2nd and 3rd distal carpal bones." [UBERON:skansa] +subset: human_subset +subset: mouse_subset synonym: "carpals 2+3" RELATED [] synonym: "fused carpals 2 and 3" EXACT [] is_a: UBERON:0001481 ! distal carpal bone intersection_of: UBERON:0001435 ! carpal bone -intersection_of: derived_from_ancestral_fusion_of UBERON:0001431 ! distal carpal bone 2 -intersection_of: derived_from_ancestral_fusion_of UBERON:0001432 ! distal carpal bone 3 -relationship: derived_from_ancestral_fusion_of UBERON:0001431 ! distal carpal bone 2 -relationship: derived_from_ancestral_fusion_of UBERON:0001432 ! distal carpal bone 3 +intersection_of: has_fused_element UBERON:0001431 ! distal carpal bone 2 +intersection_of: has_fused_element UBERON:0001432 ! distal carpal bone 3 +relationship: has_fused_element UBERON:0001431 ! distal carpal bone 2 +relationship: has_fused_element UBERON:0001432 ! distal carpal bone 3 [Term] id: UBERON:0012291 name: lateral malleolus of fibula def: "Malleolus is the name for the bony prominence on each side of the ankle." [Wikipedia:Malleolus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "distal extremity of fibula" RELATED [Wikipedia:Malleolus#Lateral_malleolus] synonym: "external malleolus of fibula" RELATED [Wikipedia:Malleolus#Lateral_malleolus] synonym: "fibular malleolus" RELATED [] @@ -322078,6 +336017,8 @@ id: UBERON:0012292 name: embryonic cloacal fold def: "One of the pair of mesenchymal swellings (folds) located on either side of the cloacal membrane during the indifferent stage of embryonic development; cranial to the cloacal membrane the folds unite to form the genital tubercle; caudally the folds are subdivided into urogenital folds anteriorly and anal folds posteriorly." [MP:0011836, MP:anna] comment: We presume this is distinct from AAO:0001003, an external integumentary structure - check with amphibian anatomy ontology developers. AO notes: the text def states mesenchymal swelling, EHDAA2 splits into mesenchymal and epithelial parts +subset: human_subset +subset: mouse_subset synonym: "cloacal fold" BROAD [EHDAA2:0004009] xref: EHDAA2:0004009 is_a: UBERON:0000481 ! multi-tissue structure @@ -322089,6 +336030,8 @@ relationship: part_of UBERON:0012469 {source="EHDAA2"} ! external anal region id: UBERON:0012293 name: anal fold def: "A slight elevation flanking the cloacal membrane and derived from a cloacal fold; anal folds form the border of the anus." [http://medical-dictionary.thefreedictionary.com/anal+fold] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004012 xref: EMAPA:37392 {source="MA:th"} is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure @@ -322100,6 +336043,8 @@ relationship: part_of UBERON:0001353 ! anal region id: UBERON:0012294 name: navicular fossa of spongiose part of urethra def: "The dilated terminal portion of the male spongy urethra located in the glans penis right before the external urethral orifice, also referred to as the most distal pendulous urethra; it is lined by stratified squamous, non-keratinizing epithelium; during development, the glans of the penis is initially solid but cannulates to give rise to the navicular fossa." [MP:0011838, MP:anna, Wikipedia:Navicular_fossa_of_male_urethra] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fossa navicularis of urethra" EXACT [] synonym: "fossa navicularis urethrae" EXACT [FMA:TA] @@ -322121,6 +336066,8 @@ relationship: part_of UBERON:0001337 ! spongiose part of urethra id: UBERON:0012295 name: Guérin's valve def: "An inconstant fold or valve of mucous membrane sometimes found in the root or upper wall of the navicular fossa of the urethra." [http://www.drugs.com/dict/valve-of-navicular-fossa.html, MP:0011839, MP:anna] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "Guerin's valve" EXACT [] synonym: "Guérin's fold" EXACT [http://www.drugs.com/dict/valve-of-navicular-fossa.html] @@ -322141,6 +336088,8 @@ relationship: part_of UBERON:0012299 ! mucosa of urethra id: UBERON:0012296 name: urethral crest def: "A longitudinal mucosal fold in the dorsal wall of the urethra[MP]." [MP:0011840, MP:anna, Wikipedia:Urethral_crest] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "crista of urethra" EXACT [] synonym: "crista urethralis" EXACT OMO:0003011 [MP:anna] @@ -322158,6 +336107,8 @@ property_value: external_ontology_notes "in the FMA this is part of the prostati id: UBERON:0012297 name: male urethral crest def: "Narrow longitudinal fold of mucosa on the posterior wall of the male urethra, extending from the uvula of the bladder through the prostatic urethra; when distended, it may serve to prevent the passage of the semen backward into the bladder; on either side of the male urethral crest is a slightly depressed fossa, the prostatic sinus, the floor of which is perforated by the orifices of the prostatic ducts from the lateral lobes of the prostate; the ducts of the middle lobe open behind the crest; at the forepart of the crest, below its summit, is a median elevation, the colliculus seminalis, upon or within the margins of which are the orifices of the prostatic utricle and the slit-like openings of the ejaculatory ducts[MP]." [MP:0011841, MP:anna] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "crista phallica" EXACT OMO:0003011 [MP:anna] synonym: "crista urethralis masculinae" EXACT OMO:0003011 [MP:anna] @@ -322177,6 +336128,8 @@ relationship: part_of UBERON:0005015 {source="cjm"} ! mucosa of prostatic urethr id: UBERON:0012298 name: female urethral crest def: "The conspicuous longitudinal fold of mucosa on the posterior wall of the female urethra[MP]." [MP:0011842, MP:anna] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "crista urethralis femininae" EXACT OMO:0003011 [MP:anna] synonym: "urethral crest (female)" EXACT [FMA:85271] @@ -322194,6 +336147,8 @@ relationship: part_of UBERON:0005014 {source="cjm"} ! mucosa of female urethra id: UBERON:0012299 name: mucosa of urethra def: "A mucosa that is part of a urethra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mucous membrane of urethra" EXACT [FMA:76904] synonym: "tunica mucosa urethrae" EXACT [FMA:TA] synonym: "urethral mucosa" EXACT [FMA:76904] @@ -322210,6 +336165,8 @@ relationship: part_of UBERON:0000057 ! urethra id: UBERON:0012300 name: limb paddle def: "A transient developing limb structure that develops from the limb bud; it is a dorsoventral flattening of the limb bud structure and develops into the foot plate." [MP:0011685] +subset: human_subset +subset: mouse_subset subset: pheno_slim is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0004347 ! limb bud @@ -322218,6 +336175,8 @@ relationship: develops_from UBERON:0004347 ! limb bud id: UBERON:0012301 name: female membranous urethra def: "A membranous urethra of male or female that is part of a female urethra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37537 {source="MA:th"} xref: MA:0002638 is_a: UBERON:0001336 ! membranous urethra of male or female @@ -322229,6 +336188,8 @@ relationship: part_of UBERON:0001334 ! female urethra id: UBERON:0012302 name: male membranous urethra def: "The shortest, least dilatable, and, with the exception of the external orifice, the narrowest part of the male urethral canal located in the deep perineal pouch and lined by pseudostratified columnar epithelium; it extends downward and forward, with a slight anterior concavity, between the apex of the prostate and the bulb of the urethra, perforating the urogenital diaphragm below and behind the pubic symphysis; the membranous portion of the urethra is completely surrounded by the fibers of the sphincter urethrae membranaceae; on either side near its termination are the bulbourethral glands." [MGI:anna, MP:0011778] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "intermediate part of male urethra" RELATED [Wikipedia:Membranous_urethra] synonym: "membranous urethra" BROAD INCONSISTENT [FMA:19674] @@ -322252,6 +336213,8 @@ id: UBERON:0012303 name: ureteral orifice def: "The slit-like opening of either ureter into the bladder; normally, the two ureteral orifices are placed at the posterolateral angles of the urinary bladder trigone while the internal urethral orifice is placed at its anteroinferior angle (apex); wide gaping usually indicates vesicoureteral reflux." [MP:0011783, Wikipedia:Orifice_of_ureter] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "Mercier's bar" EXACT [FMA:77047] synonym: "orifice of ureter" EXACT [FMA:77047] @@ -322279,6 +336242,8 @@ property_value: editor_note "TODO - add relationship to junction" xsd:string id: UBERON:0012304 name: nasal diverticulum def: "Caudally blind-ending cutaneous pouch lined with skin that occupies the nasoincisive notch. It's ventral and medial walls is formed by the alar fold. It's lateral wall is formed by the external nares and it's dorsal wall is formed by the straight fold. Lined by pigmented predominantly hairless skin. It has an external opening located on the dorsolateral aspect of the "true nostril". When the horse is exercising, obliteration of the nasal diverticulum greatly widens the nostrils increasing air intake[MURDOCH]." [ISBN:3899930983, MURDOCH:1367] +subset: human_subset +subset: mouse_subset synonym: "false nostril" RELATED [] synonym: "nasal trumpet" RELATED [ISBN:3899930983] synonym: "soft nose" RELATED [ISBN:3899930983] @@ -322289,6 +336254,8 @@ relationship: part_of UBERON:0005928 ! external naris id: UBERON:0012305 name: marginal cutaneous pouch of ear def: "A fold of skin at the caudal border of the auricle." [ISBN:9783899930993] +subset: human_subset +subset: mouse_subset synonym: "cutaneous marginal pouch" RELATED [] synonym: "marginal cutaneous pouch" RELATED [] is_a: UBERON:0001459 ! skin of external ear @@ -322298,6 +336265,8 @@ relationship: part_of UBERON:0001757 ! pinna id: UBERON:0012306 name: lateral cervical lymph node def: "A cervical lymph nodes are found in proximity to an internal or external jugular vein." [https://github.com/obophenotype/uberon/issues/5, Wikipedia:Superficial_lateral_cervical_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "lateral cervical node" EXACT [FMA:61232] xref: FMA:61232 xref: SCTID:167763000 @@ -322309,6 +336278,8 @@ property_value: dc:contributor https://github.com/tmeehan id: UBERON:0012307 name: anterior cervical lymph node def: "The anterior cervical lymph nodes are a group of nodes found on the anterior part of the neck." [https://github.com/obophenotype/uberon/issues/5, Wikipedia:Anterior_cervical_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "anterior cervical node" EXACT [] xref: FMA:61230 xref: SCTID:168259009 @@ -322321,6 +336292,8 @@ property_value: dc:contributor https://github.com/tmeehan id: UBERON:0012308 name: superficial lateral cervical lymph node def: "The superficial lateral cervical lymph nodes are found in proximity to the external jugular vein." [Wikipedia:Superficial_lateral_cervical_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "superficial lateral cervical node" EXACT [FMA:12769] xref: FMA:12769 xref: SCTID:50679006 @@ -322332,6 +336305,8 @@ is_a: UBERON:0012306 {source="FMA"} ! lateral cervical lymph node id: UBERON:0012309 name: superficial anterior cervical lymph node def: "The superficial anterior cervical lymph nodes are found in proximity to the anterior jugular vein." [Wikipedia:Superficial_anterior_cervical_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "anterior jugular lymph node" EXACT [FMA:12776] xref: FMA:12776 xref: SCTID:22993006 @@ -322343,6 +336318,8 @@ is_a: UBERON:0012307 {source="FMA"} ! anterior cervical lymph node id: UBERON:0012310 name: deep lateral cervical lymph node def: "The deep lateral cervical lymph nodes are found near the upper part of the internal jugular vein in the neck, lateral or posterior to the carotid sheath." [Wikipedia:Deep_lateral_cervical_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "deep lateral cervical node" EXACT [FMA:12770] xref: FMA:12770 xref: SCTID:61755005 @@ -322354,6 +336331,8 @@ is_a: UBERON:0012306 {source="FMA"} ! lateral cervical lymph node id: UBERON:0012311 name: deep anterior cervical lymph node def: "The deep anterior cervical lymph nodes are found near the middle cricothyroid ligament and the trachea." [Wikipedia:Deep_anterior_cervical_lymph_nodes] +subset: human_subset +subset: mouse_subset xref: FMA:12779 xref: SCTID:52363008 xref: Wikipedia:Deep_anterior_cervical_lymph_nodes @@ -322363,6 +336342,8 @@ is_a: UBERON:0012307 {source="FMA"} ! anterior cervical lymph node [Term] id: UBERON:0012312 name: maxillary process ectoderm +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004599 xref: EMAPA:17637 xref: FMA:312685 @@ -322373,6 +336354,8 @@ relationship: part_of UBERON:0005868 {source="EHDAA2"} ! maxillary prominence [Term] id: UBERON:0012313 name: 1st arch maxillary ectoderm +subset: human_subset +subset: mouse_subset synonym: "ectoderm of maxillary component" EXACT [EMAPA:16389] xref: EHDAA2:0000039 xref: EMAPA:16389 @@ -322388,6 +336371,8 @@ relationship: part_of UBERON:0007238 {source="EHDAA2"} ! 1st arch maxillary comp id: UBERON:0012314 name: embryonic facial prominence def: "One of five swellings formed during the development of the face." [http://www.indiana.edu/~anat550/hnanim/face/face.html] +subset: human_subset +subset: mouse_subset synonym: "embryonic facial process" RELATED [] synonym: "facial primordium" RELATED [] synonym: "primordium of face" RELATED [] @@ -322397,11 +336382,14 @@ is_a: UBERON:0002050 ! embryonic structure relationship: in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:8450003 ! embryonic craniocervical region [Term] id: UBERON:0012315 name: incisive foramen def: "The point where the primary palate and both palatine shelves fuse." [https://missinglink.ucsf.edu/restricted/lm/CongenitalAnomalies/CleftLipPalate.html, Wikipedia:Incisive_foramen] +subset: human_subset +subset: mouse_subset synonym: "foramina incisiva" RELATED [Wikipedia:Incisive_foramen] synonym: "foramina incisivum" EXACT OMO:0003011 [FMA:75305, FMA:TA] synonym: "incisive foramina" RELATED [Wikipedia:Incisive_foramen] @@ -322419,17 +336407,19 @@ relationship: part_of UBERON:0003129 ! skull id: UBERON:0012316 name: primitive palate def: "Roof of the buccal cavity, formed from the fusion of vomer, pterygoid, parasphenoid, palatine, ectopterygoid." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "palate" RELATED [ZFA:0005509] xref: AAO:0010535 xref: TAO:0002093 xref: Wikipedia:Primitive_palate xref: ZFA:0005509 is_a: UBERON:0007375 ! roof of mouth -relationship: derived_from_ancestral_fusion_of UBERON:0001682 ! palatine bone -relationship: derived_from_ancestral_fusion_of UBERON:0002396 ! vomer -relationship: derived_from_ancestral_fusion_of UBERON:0004745 ! parasphenoid -relationship: derived_from_ancestral_fusion_of UBERON:0010389 ! pterygoid bone -relationship: derived_from_ancestral_fusion_of UBERON:0011634 ! ectopterygoid bone +relationship: has_fused_element UBERON:0001682 ! palatine bone +relationship: has_fused_element UBERON:0002396 ! vomer +relationship: has_fused_element UBERON:0004745 ! parasphenoid +relationship: has_fused_element UBERON:0010389 ! pterygoid bone +relationship: has_fused_element UBERON:0011634 ! ectopterygoid bone relationship: part_of UBERON:0012072 {notes="palatal series", source="ISBN:0073040584"} ! palatal part of dermatocranium property_value: external_definition "Anatomical cluster that is the upper roof of the mouth that is underlain by bones such as the parasphenoid, vomer, metapterygoid, orbitosphenoid.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002093", ontology="TAO", source="TAO:wd"} property_value: external_definition "Roof of the mouth lined with ciliated epithelium.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010535", ontology="AAO", source="AAO:BJB"} @@ -322439,6 +336429,8 @@ property_value: homology_notes "Early tetrapod possessed a primary palate that i id: UBERON:0012317 name: vagina orifice def: "The median slit located inferior and posterior to the external urethral orifice in the female; the exit for menstrual flow and birth and the entrance for the penis during sexual intercourse; the size and appearance of the vaginal orifice varies inversely with that of the hymen (G. membrane), a thin fold of mucous membrane that surrounds the vaginal orifice." [MGI:anna, MGI:csmith, MP:0001142] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "introitus" BROAD [FMA:19984] synonym: "introitus" RELATED INCONSISTENT [FMA:19984] @@ -322465,6 +336457,8 @@ id: UBERON:0012318 name: anterior ethmoidal artery def: "The anterior ethmoidal artery, also anterior ethmoid artery is an artery of the head. Once branching from the ophthalmic artery, it accompanies the nasociliary nerve through the anterior ethmoidal canal to supply the anterior and middle ethmoidal cells, frontal sinus, and anterosuperior aspect of the lateral nasal wall[WP]." [Wikipedia:Anterior_ethmoidal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "a. ethmoidalis anterior" EXACT OMO:0003011 [Wikipedia:Anterior_ethmoidal_artery] synonym: "anterior ethmoid artery" RELATED [Wikipedia:Anterior_ethmoidal_artery] synonym: "anterior meningeal arteries" RELATED [Wikipedia:Anterior_ethmoidal_artery] @@ -322482,6 +336476,8 @@ id: UBERON:0012319 name: posterior ethmoidal artery def: "The posterior ethmoidal artery is an artery of the head. It is smaller than the anterior ethmoidal artery, branches off from the ophthalmic artery when it reaches the medial wall of the orbit." [Wikipedia:Posterior_ethmoidal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "a. ethmoidalis posterior" EXACT OMO:0003011 [Wikipedia:Posterior_ethmoidal_artery] synonym: "arteria ethmoidalis posterior" EXACT OMO:0003011 [Wikipedia:Posterior_ethmoidal_artery] synonym: "posterior ethmoidal vessel" RELATED [Wikipedia:Posterior_ethmoidal_artery] @@ -322495,6 +336491,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012320 name: cervical artery def: "An artery of the neck." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: EMAPA:37075 {source="MA:th"} xref: NCIT:C52850 xref: UMLS:C1707349 {source="ncithesaurus:Cervical_Artery"} @@ -322509,6 +336507,8 @@ id: UBERON:0012321 name: deep cervical artery def: "The deep cervical artery (Profunda cervicalis) is an artery of the neck." [Wikipedia:Deep_cervical_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "profunda cervicalis" RELATED [Wikipedia:Deep_cervical_artery] xref: FMA:10659 xref: SCTID:244223002 @@ -322526,6 +336526,8 @@ id: UBERON:0012322 name: ascending cervical artery def: "The ascending cervical artery is a small branch which arises from the inferior thyroid artery as that vessel is passing behind the carotid sheath; it runs up on the anterior tubercles of the transverse processes of the cervical vertebrC& in the interval between the Scalenus anterior and Longus capitis. To the muscles of the neck it gives twigs which anastomose with branches of the vertebral, and it sends one or two spinal branches into the vertebral canal through the intervertebral foramina to be distributed to the medulla spinalis and its membranes, and to the bodies of the vertebrC&, in the same manner as the spinal branches from the vertebral. It anastomoses with the ascending pharyngeal and occipital arteries." [Wikipedia:Ascending_cervical_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ascending cervical" RELATED [Wikipedia:Ascending_cervical_artery] xref: FMA:52489 xref: SCTID:161846001 @@ -322539,6 +336541,8 @@ id: UBERON:0012324 name: transverse cervical artery def: "The transverse cervical artery (transverse artery of neck, transversa colli artery) is a branch of the thyrocervical trunk, running at a higher level than the suprascapular artery." [Wikipedia:Transverse_cervical_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cervical artery" RELATED [MA:0001936, Wikipedia:Transverse_cervical_artery] synonym: "cervical transverse artery" RELATED [Wikipedia:Transverse_cervical_artery] synonym: "descending branch of the transverse cervical" RELATED [Wikipedia:Transverse_cervical_artery] @@ -322568,6 +336572,8 @@ relationship: in_taxon NCBITaxon:6656 ! Arthropoda id: UBERON:0012326 name: gubernacular bulb def: "The caudal, swollen portion of the gubernaculum." [http://orcid.org/0000-0002-6601-2165, ISBN:0123971756] +subset: human_subset +subset: mouse_subset synonym: "bulb of gubernaculum" NARROW [] synonym: "pars infravaginalis gubernaculi" NARROW [PMID:11997885] is_a: UBERON:0000064 ! organ part @@ -322581,6 +336587,8 @@ property_value: taxon_notes "In rodents, during inguinoscrotal descent the guber id: UBERON:0012327 name: pearly penile papule def: "Small saliences on the ridge of the glans of the male genital organs." [Wikipedia:Hirsuties_coronae_glandis] +subset: human_subset +subset: mouse_subset synonym: "hirsuties coronae glandis" EXACT OMO:0003004 [Wikipedia:Hirsuties_coronae_glandis] synonym: "hirsutoid papilloma" EXACT [Wikipedia:Hirsuties_coronae_glandis] synonym: "preputial gland of penis" RELATED INCONSISTENT [FMA:19653] @@ -322596,6 +336604,7 @@ relationship: present_in_taxon NCBITaxon:9606 {source="Wikipedia:Preputial_gland id: UBERON:0012328 name: penile spine def: "Keratinized structures along the glans and/or shaft of their penis that may be involved in sexual selection." [Wikipedia:Penile_spines] +subset: mouse_subset synonym: "penis spike" RELATED [] synonym: "penis spine" RELATED [] xref: Wikipedia:Penile_spines @@ -322610,6 +336619,8 @@ relationship: present_in_taxon NCBITaxon:40674 ! Mammalia id: UBERON:0012329 name: keratinized stratified squamous epithelium def: "Keratinized stratified squamous epithelium is a stratified squamous epithelium, the cells of which synthesize and accumulate keratin." [FMA:45568, Wikipedia:Stratified_squamous_epithelium#Keratinized] +subset: human_subset +subset: mouse_subset synonym: "epithelium stratificatum squamosum cornificatum" EXACT OMO:0003011 [FMA:45568] xref: FMA:45568 xref: Wikipedia:Stratified_squamous_epithelium#Keratinized @@ -322622,6 +336633,8 @@ relationship: has_part GO:0045095 ! keratin filament id: UBERON:0012330 name: nasal-associated lymphoid tissue def: "The lymphocytic cell population present in the mucosa of the nasopharyngeal duct of some animals." [ncithesaurus:Nasal-Associated_Lymphoid_Tissue] +subset: human_subset +subset: mouse_subset synonym: "NALT" EXACT OMO:0003000 [Wikipedia:Mucosa-associated_lymphoid_tissue#Categorisation] synonym: "naso-pharyngeal lymphoid tissue" EXACT [FMA:79771] xref: FMA:79771 @@ -322638,20 +336651,29 @@ relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0012331 name: mesosalpinx -def: "The mesosalpinx is part of the lining of the abdominal cavity in higher vertebrates, specifically the portion of the broad ligament that stretches from the uterine tube to the level of the ovary." [Wikipedia:Mesosalpinx] -subset: human_reference_atlas +def: "A serous layer that is part of the peritoneal lining of the abdominal cavity in higher vertebrates, specifically the portion of the broad ligament that stretches from the uterine (fallopian) tube to the ovary. It is made up of epithelial cells of mesothelium and a mesh of serous membrane lining." [doi:10.1016/B978-0-12-801238-3.64401-X, PMID:29763118, Wikipedia:Mesosalpinx] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset +synonym: "fallopian tube mesosalpinx" EXACT [] +synonym: "mesentery of fallopian tube" EXACT [PMID:29763118] +synonym: "mesentery of uterine tube" EXACT [PMID:29763118] +synonym: "serous layer of fallopian tube" EXACT [doi:10.1016/B978-0-12-801238-3.64401-X] xref: FMA:19808 xref: SCTID:279900000 xref: Wikipedia:Mesosalpinx is_a: UBERON:0002095 ! mesentery relationship: part_of UBERON:0012332 ! broad ligament of uterus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: surrounds UBERON:0003889 ! fallopian tube [Term] id: UBERON:0012332 name: broad ligament of uterus def: "A broad fold of peritoneum that extends from the side of the uterus to the wall of the pelvis." [MESH:A02.513.170, Wikipedia:Broad_ligament_of_the_uterus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "broad ligament" RELATED [MESH:A02.513.170] synonym: "broad uterine ligament" EXACT [FMA:16516] synonym: "ligamentum latum uteri" RELATED OMO:0003011 [] @@ -322673,6 +336695,8 @@ id: UBERON:0012333 name: ovarian bursa def: "A pouch formed by the mesosalpinx and the mesovarium that encloses the infundibulum of the uterine tube and the ovary." [http://medical-dictionary.thefreedictionary.com/ovarian] comment: Ovaries of some animals are surrounded by a thin membranous sac, the bursa, and are isolated from the peritoneal cavity. The bursa is continuous with the orifice of the oviduct. The bursa is not continuous in other mammals (eg., farm animals and human beings); ovaries of these species can be exposed within the abdomen, and thus ectopic pregnancy is possible[http://www.uwyo.edu/wjm/repro/femanat.htm] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: MA:0003036 xref: SCTID:250080006 @@ -322705,6 +336729,8 @@ relationship: part_of UBERON:0002398 ! manus id: UBERON:0012336 name: perianal skin def: "A zone of skin that is part of the area surrounding the anus." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "skin of perianal area" EXACT [] xref: EMAPA:37715 {source="MA:th"} xref: FMA:29350 @@ -322718,6 +336744,8 @@ relationship: surrounds UBERON:0001245 ! anus id: UBERON:0012337 name: cauda equina def: "The cauda equina is a structure within the lower end of the spinal column of most vertebrates, that consists of nerve roots and rootlets from above. The space in which the cerebrospinal fluid is present is actually an extension of the subarachnoid space." [Wikipedia:Cauda_equina] +subset: human_subset +subset: mouse_subset synonym: "filum terminale" RELATED [MESH:A08.800.800.720.725.150] xref: EMAPA:37468 {source="MA:th"} xref: FMA:52590 @@ -322746,6 +336774,8 @@ relationship: part_of UBERON:0002387 ! pes id: UBERON:0012344 name: holocrine gland def: "Any exocrine gland whose secretion consists of its own disintegrated secretory cells along with its secretory product; holocrine secretions are produced in the cytoplasm of the cell and released by the rupture of the plasma membrane, which destroys the cell and results in the secretion of the product into the lumen." [MP:0013543] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: BTO:0002325 xref: MA:0003042 @@ -322756,6 +336786,8 @@ is_a: UBERON:0002365 {source="MA", source="MP"} ! exocrine gland id: UBERON:0012348 name: autopod pad def: "Pigmented, keratinised, hairless epidermis covering subcutaneous, collagenous, and adipose tissue." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Paw#Common_characteristics] +subset: human_subset +subset: mouse_subset synonym: "paw pad" RELATED [] is_a: UBERON:0015790 ! autopod skin relationship: has_part UBERON:0001003 ! skin epidermis @@ -322768,6 +336800,8 @@ id: UBERON:0012349 name: digital pad def: "A thick spongy structure at the base of the autopod, centred over the flexor surfaces of the distal interphalangeal joints." [MURDOCH:611] comment: May be fused +subset: human_subset +subset: mouse_subset synonym: "acropodial pad" EXACT [] synonym: "acropodium pad" EXACT [] synonym: "digital cushion" RELATED [] @@ -322782,6 +336816,8 @@ relationship: part_of UBERON:0012354 ! acropodium region id: UBERON:0012350 name: carpal pad def: "An autopod pad found in the carpal region of a manus. Used for additional traction when stopping or descending a slope in digitigrade species." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001518 ! skin of wrist is_a: UBERON:0013622 ! manual autopod pad intersection_of: UBERON:0012348 ! autopod pad @@ -322792,6 +336828,8 @@ relationship: part_of UBERON:0004452 ! carpal region id: UBERON:0012351 name: urachal lumen def: "An anatomical space that is enclosed by a urachus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "urachus lumen" EXACT [] is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space @@ -322803,6 +336841,8 @@ relationship: part_of UBERON:0002068 ! urachus id: UBERON:0012352 name: mesangial matrix def: "Extracellular matrix secreted by intraglomerular mesangial cells." [MP:0011338] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "extracellular mesangial matrix" EXACT [MP:0011338] xref: EMAPA:37907 {source="MA:th"} @@ -322827,6 +336867,8 @@ relationship: skeleton_of UBERON:0008897 ! fin id: UBERON:0012354 name: acropodium region def: "The segment of the autopod that is distal to the metapodial region and consists of the digits." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "acropodial limb segment" EXACT [] synonym: "acropodial region" EXACT [] synonym: "acropodial segment of autopod" EXACT [] @@ -322843,6 +336885,8 @@ property_value: curator_notes "class refers to an entire limb segment, not just id: UBERON:0012355 name: manual acropodium region def: "The segment of the manus that is distal to the metacarpal region and consists of the manual digits (fingers)." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "acropodial hindlimb segment" EXACT [] synonym: "acropodial region of manus" EXACT [] synonym: "acropodial segment of manus" EXACT [] @@ -322873,6 +336917,8 @@ property_value: curator_notes "class refers to an entire limb segment, not just id: UBERON:0012356 name: pedal acropodium region def: "The segment of the pes that is distal to the metatarsal region and consists of the pedal digits (toes)." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "acropodial forelimb segment" EXACT [] synonym: "acropodial region of pes" EXACT [] synonym: "acropodial segment of pes" EXACT [] @@ -322897,6 +336943,8 @@ property_value: curator_notes "class refers to an entire limb segment, not just id: UBERON:0012357 name: digitopodium bone def: "A bone that is part of a the digitopodium skeleton - i.e. the acropodial skeleton or the metapodial skeleton." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit bone" RELATED COMPARATIVE_PREFERRED [] is_a: UBERON:0011250 ! autopod bone intersection_of: UBERON:0001474 ! bone element @@ -322909,6 +336957,8 @@ relationship: part_of UBERON:0012150 ! skeleton of digitopodium id: UBERON:0012358 name: manual digitopodium bone def: "A bone that is part of a the manual digitopodium skeleton - i.e. the fingers or the metacarpal skeleton." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "bone of forelimb digitopodium" EXACT [] xref: SCTID:265809008 is_a: UBERON:0005897 ! manus bone @@ -322923,6 +336973,8 @@ relationship: part_of UBERON:0012151 ! skeleton of manual digitopodium id: UBERON:0012359 name: pedal digitopodium bone def: "A bone that is part of a the pedal digitopodium skeleton - i.e. the toes or the metatarsal skeleton." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "bone of hindlimb digitopodium" EXACT [] is_a: UBERON:0005899 ! pes bone is_a: UBERON:0012357 ! digitopodium bone @@ -322936,6 +336988,8 @@ relationship: part_of UBERON:0012152 ! skeleton of pedal digitopodium id: UBERON:0012360 name: bone of jaw def: "A bone element that is part of a jaw region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "jaw bone" EXACT [] xref: EMAPA:35453 xref: MA:0003130 @@ -322951,6 +337005,8 @@ property_value: editor_note "Do not manually classify under here - bones are aut [Term] id: UBERON:0012361 name: internal anal region +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004588 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of NCBITaxon:6072 ! Eumetazoa @@ -322960,6 +337016,8 @@ relationship: part_of UBERON:0001353 {source="EHDAA2"} ! anal region id: UBERON:0012363 name: thyroid follicle epithelium def: "An epithelium that is part of a thyroid follicle." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelium of thyroid follicle" EXACT [FMA:68783] synonym: "thryoid epithelium" BROAD [] synonym: "thyroid follicle epithelium" EXACT [FMA:68783] @@ -322977,6 +337035,8 @@ relationship: present_in_taxon NCBITaxon:7955 {notes="As in mammals, the thyroid id: UBERON:0012364 name: colloid of thyroid follicle def: "Portion of substance contained within the thyroid follicle lumen. Contains prohormone thyroglobulin." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "thyroid colloid" EXACT [FMA:68831] synonym: "thyroid follicle colloid" EXACT [FMA:68831] xref: FMA:68831 @@ -322989,6 +337049,8 @@ relationship: part_of UBERON:0005305 ! thyroid follicle id: UBERON:0012367 name: muscle layer of intestine def: "A muscle layer that is part of an intestine." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "intestinal muscularis propria" EXACT [FMA:15697] synonym: "muscularis externa of intestine" EXACT [FMA:15697] synonym: "smooth muscle of intestine" RELATED [] @@ -323003,6 +337065,8 @@ relationship: part_of UBERON:0001262 {source="FMA"} ! wall of intestine id: UBERON:0012368 name: circular muscle layer of muscular coat def: "The inner layer of the muscular coat." [BTO:0005213] +subset: human_subset +subset: mouse_subset synonym: "circular muscle layer" RELATED [] synonym: "circular smooth muscle" RELATED [BTO:0005213] synonym: "inner muscularis" RELATED [FMA:62899] @@ -323017,6 +337081,8 @@ relationship: part_of UBERON:0006660 ! muscular coat id: UBERON:0012369 name: longitudinal muscle layer of muscular coat def: "The outer layer of the muscular coat." [BTO:0005214] +subset: human_subset +subset: mouse_subset synonym: "longitudinal muscle layer" RELATED [] synonym: "longitudinal smooth muscle" RELATED [BTO:0005214] synonym: "outer muscularis" RELATED [FMA:62900] @@ -323032,6 +337098,8 @@ id: UBERON:0012373 name: sympathetic nerve plexus def: "A nerve plexus that is part of a sympathetic nervous system." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:37617 {source="MA:th"} xref: MA:0001160 is_a: UBERON:0001816 ! autonomic nerve plexus @@ -323044,6 +337112,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012374 name: subserosal plexus def: "The subserous part of the enteric plexus of autonomic nerves." [http://medical-dictionary.thefreedictionary.com/subserous+plexus] +subset: human_subset +subset: mouse_subset synonym: "subserous nerve plexus" EXACT [FMA:77598] synonym: "subserous plexus" EXACT [FMA:77598] synonym: "tela subserosa" EXACT [] @@ -323059,6 +337129,8 @@ name: subserosa def: "A layer of tissue between the muscularis and serosa." [Wikipedia:Subserosa] comment: Contains nerves, blood vessels, lymphatics and lymph nodes subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:45636 xref: NCIT:C94494 xref: SCTID:2255006 @@ -323077,6 +337149,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012376 name: retromolar triangle def: "The small area behind the wisdom teeth." [ncithesaurus:Retromolar_Trigone, Wikipedia:Retromolar_space] +subset: human_subset +subset: mouse_subset synonym: "retromolar pad" RELATED [] synonym: "retromolar trigone" RELATED [] xref: CALOHA:TS-2353 @@ -323093,6 +337167,8 @@ id: UBERON:0012377 name: muscle layer of jejunum def: "A muscular coat that is part of a jejunum." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "jejunal smooth muscle" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "muscularis externa of jejunum" EXACT [FMA:14951] synonym: "muscularis propria of jejunum" RELATED [https://orcid.org/0000-0002-6601-2165] @@ -323109,6 +337185,8 @@ id: UBERON:0012378 name: muscle layer of urinary bladder def: "A muscular coat that is part of a urinary bladder." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "bladder muscular coat" EXACT [] synonym: "muscle layer of urinary bladder" EXACT [FMA:15930] synonym: "muscular coat of bladder" EXACT [FMA:15930] @@ -323134,6 +337212,8 @@ id: UBERON:0012398 name: large intestine smooth muscle circular layer def: "A circular muscle layer of muscular coat that is part of a large intestine smooth muscle." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "circular muscle layer of segment of large intestine" RELATED [FMA:81160] xref: EMAPA:37558 {source="MA:th"} xref: FMA:81160 @@ -323150,6 +337230,8 @@ id: UBERON:0012399 name: large intestine smooth muscle longitudinal layer def: "A longitudinal muscle layer of muscular coat that is part of a large intestine smooth muscle." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "longitudinal muscle layer of zone of large intestine" RELATED [FMA:63637] xref: EMAPA:37559 {source="MA:th"} xref: FMA:63637 @@ -323165,6 +337247,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012401 name: small intestine smooth muscle circular layer def: "A circular muscle layer of muscular coat that is part of a small intestine smooth muscle." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "circular layer of small intestine muscularis propria" EXACT [FMA:14935] synonym: "circular muscle coat of small intestine" EXACT [FMA:14935] synonym: "circular muscle layer of small intestine" EXACT [FMA:14935] @@ -323188,6 +337272,8 @@ relationship: part_of UBERON:0011201 {source="FMA"} ! muscle layer of small inte id: UBERON:0012402 name: small intestine smooth muscle longitudinal layer def: "A longitudinal muscle layer of muscular coat that is part of a small intestine smooth muscle." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "long pitch helicoidal muscle layer of small intestine" EXACT [FMA:14936] synonym: "longitudinal layer of small intestine muscularis propria" EXACT [FMA:14936] synonym: "longitudinal muscle coat of small intestine" EXACT [FMA:14936] @@ -323211,6 +337297,8 @@ relationship: part_of UBERON:0011201 {source="FMA"} ! muscle layer of small inte id: UBERON:0012416 name: respiratory system arterial smooth muscle subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:37567 {source="MA:th"} xref: MA:0001802 is_a: UBERON:0004297 ! respiratory system blood vessel smooth muscle @@ -323225,6 +337313,8 @@ id: UBERON:0012418 name: respiratory system venous smooth muscle def: "A smooth muscle tissue that is part of a respiratory system venous blood vessel." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:37586 {source="MA:th"} xref: MA:0001812 is_a: UBERON:0004696 ! venous system smooth muscle @@ -323238,6 +337328,8 @@ id: UBERON:0012419 name: taenia coli def: "The taeniae coli (also teniae coli) are three separate longitudinal ribbons of smooth muscle on the outside of the ascending, transverse, descending and sigmoid colons. They are visible, and can be seen just below the serosa or fibrosa. They are the Mesocolic, Free and Omental Coli. The teniae coli contracts length wise to produce the haustra, the bulges in the colon. The bands converge at the root of the vermiform appendix and the rectum. These bands correspond to the outer layer of the muscularis externa, in other portions of the digestive tract." [Wikipedia:Taenia_coli] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "longitudinal band of large intestine muscularis" EXACT [FMA:15041] synonym: "longitudinal bands" RELATED [Wikipedia:Taenia_coli] synonym: "taeniae coli" RELATED [Wikipedia:Taenia_coli] @@ -323255,6 +337347,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012420 name: coprodeum def: "Most proximal cloacal compartment, into which the large intestine empties[Kardong]." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "cloacal coprodeum" EXACT [] synonym: "coprodaeum" EXACT [] synonym: "coprodeal portion of cloaca" EXACT [] @@ -323291,6 +337385,8 @@ relationship: produced_by UBERON:0007356 ! crop id: UBERON:0012423 name: layer of microvilli def: "A layer of microvilli, Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments[GO,modified]." [GO:0005902, Wikipedia:Microvillus] +subset: human_subset +subset: mouse_subset synonym: "microvilli" RELATED [MESH:A11.284.180.565] synonym: "microvillus" RELATED [FMA:67296] xref: FMA:67296 @@ -323309,6 +337405,8 @@ id: UBERON:0012424 name: brush border layer def: "The microvilli-covered surface of simple cuboidal epithelium and simple columnar epithelium cells found in certain locations of the body; mainly in the small an large intestines and kidneys." [Wikipedia:Brush_border] comment: Note - this anatomical structure differs from the cellular component GO_0005903 brush border (defined as: the dense covering of microvilli on the apical surface of a epithelial cells in tissues such as the intestine, kidney, and choroid plexus; the microvilli aid absorption by increasing the surface area of the cell). +subset: human_subset +subset: mouse_subset synonym: "brush border" RELATED [FMA:70977] synonym: "brush border membrane" RELATED [Wikipedia:Brush_border] xref: FMA:70977 @@ -323321,6 +337419,8 @@ property_value: external_ontology_notes "FMA class represents an individual micr id: UBERON:0012425 name: striated border microvillus layer def: "A microvillus layer that is striated and found in the intestine." [http://medical-dictionary.thefreedictionary.com/striated+border, http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "striated border" RELATED [FMA:70978] xref: FMA:70978 xref: NCIT:C33634 @@ -323332,6 +337432,8 @@ property_value: external_ontology_notes "FMA class represents an individual micr id: UBERON:0012426 name: short microvillus layer def: "A layer of microvilli covering lymphocytes." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "short microvillus" RELATED [FMA:70979] xref: FMA:70979 is_a: UBERON:0012423 ! layer of microvilli @@ -323343,6 +337445,8 @@ id: UBERON:0012427 name: intestinal brush border layer def: "A brush border layer that is part of a intestine." [OBOL:automatic] comment: Consider merging into UBERON:0012425 +subset: human_subset +subset: mouse_subset synonym: "brush border microvillus layer of intestine" EXACT [] synonym: "intestinal brush border" EXACT [] is_a: UBERON:0012424 ! brush border layer @@ -323354,6 +337458,8 @@ relationship: part_of UBERON:0000160 ! intestine id: UBERON:0012428 name: proximal convoluted tubule brush border def: "A brush border layer that is part of a proximal tubule in the kidney." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Microvillus#Function] +subset: human_subset +subset: mouse_subset synonym: "kidney brush border layer" BROAD [] synonym: "proximal tubule brush border layer" BROAD [] is_a: UBERON:0004120 ! mesoderm-derived structure @@ -323368,6 +337474,8 @@ property_value: function_notes "the microvilli in this layer can act as mechanos id: UBERON:0012429 name: hematopoietic tissue def: "Blood-forming tissue, consisting of reticular fibers and cells." [http://encyclopedia2.thefreedictionary.com/hematopoietic+tissue] +subset: human_subset +subset: mouse_subset synonym: "bone marrow tissue" NARROW [NCBITaxon:9606] synonym: "haemopoietic tissue" EXACT [FMA:14073] synonym: "hematopoietic tissue" EXACT [FMA:14073] @@ -323390,6 +337498,8 @@ property_value: taxon_notes "Bone marrow in humans, kidney interstitium in Danio id: UBERON:0012430 name: tunica fibrosa of eyeball def: "The sclera and cornea form the fibrous tunic of the bulb of the eye; the sclera is opaque, and constitutes the posterior five-sixths of the tunic; the cornea is transparent, and forms the anterior sixth." [Wikipedia:Fibrous_tunic_of_eyeball] +subset: human_subset +subset: mouse_subset synonym: "corneosclera" RELATED [Wikipedia:Fibrous_tunic_of_eyeball] synonym: "fibrous layer of eyeball" EXACT [FMA:58102] synonym: "fibrous tunic" RELATED [Wikipedia:Fibrous_tunic_of_eyeball] @@ -323409,6 +337519,8 @@ relationship: present_in_taxon NCBITaxon:7955 {source="DOI:10.1177/0192623311409 id: UBERON:0012437 name: epithelial-mesenchymal boundary def: "An anatomical line that adjacent_to a epithelium and adjacent_to a mesenchyme." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006800 ! anatomical line intersection_of: UBERON:0006800 ! anatomical line intersection_of: adjacent_to UBERON:0000483 ! epithelium @@ -323421,6 +337533,8 @@ relationship: in_taxon NCBITaxon:6072 ! Eumetazoa id: UBERON:0012438 name: blastema of regenerating fin/limb def: "A blastema that is part of a regenerating fin/limb." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: ZFA:0001270 is_a: UBERON:0005306 ! blastema intersection_of: UBERON:0005306 ! blastema @@ -323431,6 +337545,8 @@ relationship: part_of UBERON:2001269 ! regenerating fin/limb id: UBERON:0012439 name: blastema of regenerating digit tip def: "A blastema that is part of a distal segment of digit." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "digit blastema" RELATED [] is_a: UBERON:0005306 ! blastema intersection_of: UBERON:0005306 ! blastema @@ -323442,6 +337558,8 @@ id: UBERON:0012441 name: endothelium of peritubular capillary def: "An endothelium that is part of a peritubular capillary." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "peritubular capillary endothelium" EXACT [] synonym: "peritubular endothelium" BROAD [] is_a: UBERON:0001915 ! endothelium of capillary @@ -323455,6 +337573,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012442 name: epiploic foramen def: "The passage of communication, or foramen, between the general cavity (of the abdomen), and the omental bursa." [Wikipedia:Omental_foramen] +subset: human_subset +subset: mouse_subset synonym: "aditus to lesser sac" EXACT [FMA:14711] synonym: "epiploic foramen" RELATED [Wikipedia:Omental_foramen] synonym: "epiploic foramen of Winslow" EXACT [Wikipedia:Omental_foramen] @@ -323519,6 +337639,8 @@ id: UBERON:0012449 name: mechanoreceptor def: "A sensory receptor that responds to mechanical pressure or distortion." [Wikipedia:Mechanoreceptor] comment: Normally there are four main types in glabrous skin: Pacinian corpuscles, Meissner's corpuscles, Merkel's discs, and Ruffini endings. There are also mechanoreceptors in hairy skin, and the hair cells in the cochlea are the most sensitive mechanoreceptors, transducing air pressure waves into nerve signals sent to the brain. In the periodontal ligament, there are some mechanoreceptors, which allow the jaw to relax when biting down on hard objects; the mesencephalic nucleus is responsible for this reflex +subset: human_subset +subset: mouse_subset xref: FMA:86587 xref: MESH:D008465 xref: NCIT:C13821 @@ -323533,6 +337655,8 @@ id: UBERON:0012450 name: Meissner's corpuscle def: "A type of nerve ending in the skin that is responsible for sensitivity to light touch. In particular, they have highest sensitivity (lowest threshold) when sensing vibrations lower than 50 Hertz. They are rapidly adaptive receptors." [Wikipedia:Meissner%27s_corpuscle] comment: located in papillary layer of dermis in glabrous skin[ISBN:9780849388118] +subset: human_subset +subset: mouse_subset synonym: "Dogiel's end bulb" RELATED [ISBN:9780849388118] synonym: "meisner's corpuscle" RELATED [Wikipedia:Meissner%27s_corpuscle] synonym: "meissner corpuscle" RELATED [Wikipedia:Meissner%27s_corpuscle] @@ -323555,6 +337679,8 @@ relationship: part_of UBERON:0002199 ! integument id: UBERON:0012451 name: sensory receptor def: "A sensory nerve ending that responds to a stimulus in the internal or external environment of an organism. In response to stimuli the sensory receptor initiates sensory transduction by creating graded potentials or action potentials in the same cell or in an adjacent one." [Wikipedia:Sensory_receptor] +subset: human_subset +subset: mouse_subset synonym: "peripheral ending of sensory neuron" EXACT [FMA:84650] synonym: "sensory nerve ending" RELATED [MESH:A08.800.550.700] xref: FMA:84650 @@ -323572,6 +337698,8 @@ relationship: capable_of GO:0051606 ! detection of stimulus id: UBERON:0012453 name: nerve ending def: "Specialized terminations of peripheral neurons. Nerve endings include NEUROEFFECTOR JUNCTION(s) by which neurons activate target organs and sensory receptors (see RECEPTORS, SENSORY) which transduce information from the various sensory modalities and send it centrally in the nervous system. Presynaptic nerve endings are PRESYNAPTIC TERMINALS." [MESH:A08.800.550] +subset: human_subset +subset: mouse_subset synonym: "nerve ending" RELATED [MESH:A08.800.550] xref: MESH:D009411 is_a: UBERON:0005162 ! multi cell part structure @@ -323583,6 +337711,8 @@ property_value: curator_notes "this class and subclasses may be ceded to GO" xsd id: UBERON:0012456 name: Merkel nerve ending def: "Mechanoreceptors found in the skin and mucosa of vertebrates that provide touch information to the brain. The information they provide are those regarding pressure and texture. Each ending consists of a Merkel cell in close apposition with an enlarged nerve terminal." [Wikipedia:Merkel_nerve_ending] +subset: human_subset +subset: mouse_subset synonym: "Merkel's disc" EXACT [FMA:83606] synonym: "Merkel's disk" EXACT [] synonym: "Merkel's receptor" EXACT [] @@ -323603,6 +337733,8 @@ property_value: taxon_notes "In mammals, Merkel nerve endings have a wide distri id: UBERON:0012457 name: Ruffini nerve ending def: "An encapsulated nerve receptor present in subpapillary dermis and deep dermis of hairy and glabrous skin." [ISBN:9780849388118, Wikipedia:Bulbous_corpuscle] +subset: human_subset +subset: mouse_subset synonym: "bulbous corpuscle" RELATED [Wikipedia:Ruffini_ending] synonym: "corpuscle of ruffini" RELATED [Wikipedia:Ruffini_ending] synonym: "corpusculum sensorium fusiforme" EXACT OMO:0003011 [Wikipedia:Ruffini_ending] @@ -323648,6 +337780,8 @@ relationship: part_of UBERON:0006971 ! antler id: UBERON:0012462 name: proctodeum portion of cloaca def: "Most distal cloacal compartment; function is copulation and in some species develops a penis[Kardong]." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "proctodeal wall of cloaca" RELATED [] synonym: "proctodeum" RELATED INCONSISTENT [] xref: SCTID:298233001 @@ -323661,6 +337795,8 @@ property_value: taxon_notes "For most birds this is where the phallus is located id: UBERON:0012463 name: cloacal lumen def: "An anatomical space that is enclosed by a cloaca." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cloaca lumen" EXACT [ZFA:0000330] synonym: "cloacal chamber" EXACT [ZFA:0000330] xref: TAO:0000330 @@ -323677,6 +337813,8 @@ property_value: external_ontology_notes "the ZFA class belongs here as it is an id: UBERON:0012464 name: cloacal vent def: "The opening of the cloacal chamber to the outside of the organism. Birds maintain a single cloacal opening throughout their lives." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "cloacal opening" EXACT [] synonym: "cloacal orifice" RELATED [] synonym: "vent" RELATED [] @@ -323689,6 +337827,8 @@ relationship: part_of UBERON:0000162 ! cloaca id: UBERON:0012465 name: lumen of terminal part of digestive tract def: "An anatomical space that is enclosed by a terminal part of digestive tract." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0006866 ! terminal part of digestive tract @@ -323699,6 +337839,8 @@ property_value: taxon_notes "includes the cloacal lumen, in species where this i [Term] id: UBERON:0012466 name: extraembryonic cavity +subset: human_subset +subset: mouse_subset synonym: "extraembryonic cavities" RELATED OMO:0003004 [EHDAA2:0000472] xref: EHDAA2:0000472 xref: EMAPA:16054 @@ -323712,6 +337854,8 @@ relationship: part_of UBERON:0016887 ! entire extraembryonic component id: UBERON:0012467 name: enclosed anatomical space def: "An anatomical space with no opening to another space or to the exterior." [AEO:0000222] +subset: human_subset +subset: mouse_subset synonym: "closed anatomical space" EXACT [] xref: AEO:0000222 is_a: UBERON:0000464 ! anatomical space @@ -323736,6 +337880,8 @@ relationship: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0012469 name: external anal region +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004589 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of NCBITaxon:6072 ! Eumetazoa @@ -323752,6 +337898,8 @@ relationship: in_taxon NCBITaxon:7586 ! Echinodermata id: UBERON:0012471 name: hepatogastric ligament def: "Ligament extending between the liver and stomach." [Wikipedia:Hepatogastric_ligament] +subset: human_subset +subset: mouse_subset synonym: "gastro-hepatic ligament" EXACT [] synonym: "gastrohepatic ligament" EXACT [FMA:16520] synonym: "hepato-gastric ligament" EXACT [] @@ -323774,6 +337922,8 @@ relationship: part_of UBERON:0002399 {source="FMA"} ! lesser omentum id: UBERON:0012472 name: hepatoduodenal ligament def: "The hepatoduodenal ligament is the portion of the lesser omentum extending between the porta hepatis of the liver and the superior part of the duodenum." [Wikipedia:Hepatoduodenal_ligament] +subset: human_subset +subset: mouse_subset synonym: "ligamentum hepatoduodenale" EXACT [Wikipedia:Hepatoduodenal_ligament] xref: FMA:16521 xref: SCTID:362706000 @@ -323827,6 +337977,8 @@ property_value: taxon_notes "may be analagous to liver, Romer says not homologou id: UBERON:0012475 name: skeleton of pectoral complex def: "The collection of all skeletal elements in a pectoral complex - i.e. the combination of free limb or fin plus pectoral girdle." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bones of upper limb" RELATED [FMA:24139] synonym: "ossa membri superioris" RELATED [FMA:TA] @@ -323846,6 +337998,8 @@ relationship: skeleton_of UBERON:0010708 ! pectoral complex id: UBERON:0012476 name: skeleton of pelvic complex def: "The collection of all skeletal elements in a pelvic complex - i.e. the combination of free limb or fin plus pelvic girdle." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bones of lower limb" RELATED [FMA:24140] synonym: "lower limb skeleton" RELATED [FMA:24140] @@ -323865,6 +338019,8 @@ relationship: skeleton_of UBERON:0010709 ! pelvic complex id: UBERON:0012477 name: dorsal part of neck def: "The posterior region of the neck, including the suboccipital region." [MP:0012723] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "back of neck" EXACT [FMA:24189] synonym: "hindneck" RELATED [] @@ -323891,6 +338047,8 @@ property_value: has_relational_adjective "nuchal" xsd:string id: UBERON:0012478 name: cloacal gland def: "A gland that is part of a cloaca." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003408 ! gland of digestive tract intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0000162 ! cloaca @@ -323911,6 +338069,8 @@ id: UBERON:0012480 name: cloacal mucosa alt_id: UBERON:0003349 def: "A mucosa that is part of a cloaca [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cloaca mucosa" EXACT [] synonym: "cloaca mucosa of organ" EXACT [] synonym: "cloaca mucous membrane" EXACT [] @@ -323929,6 +338089,8 @@ relationship: part_of UBERON:0000162 ! cloaca id: UBERON:0012481 name: cloacal epithelium def: "An epithelium that is part of a cloaca." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "cloacal endoderm" RELATED [EMAPA:27577] xref: EMAPA:27577 xref: EMAPA:36070 @@ -323945,6 +338107,8 @@ property_value: external_definition "cloacal epithelium (cle) (syn: cloacal endo id: UBERON:0012482 name: submucosa of cloaca def: "A submucosa that is part of a cloaca [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cloaca submucosa" EXACT [] synonym: "cloacal submucosa" EXACT [] is_a: UBERON:0018257 ! submucosa of digestive tract @@ -323956,6 +338120,8 @@ relationship: part_of UBERON:0000162 ! cloaca id: UBERON:0012483 name: serosa of cloaca def: "A serous membrane that is part of a cloaca [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cloaca serosa" EXACT [] synonym: "cloaca serous membrane" EXACT [] synonym: "cloacal serosa" EXACT [] @@ -323969,6 +338135,8 @@ relationship: part_of UBERON:0000162 ! cloaca [Term] id: UBERON:0012485 name: cloacal villus +subset: human_subset +subset: mouse_subset synonym: "cloacal villi" EXACT OMO:0003004 [] is_a: UBERON:0012423 ! layer of microvilli intersection_of: UBERON:0012423 ! layer of microvilli @@ -323979,6 +338147,8 @@ relationship: part_of UBERON:0000162 ! cloaca id: UBERON:0012486 name: muscle layer of cloaca def: "A muscular coat that is part of a cloaca." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscularis externa of cloaca" EXACT [] synonym: "smooth muscle of cloaca" RELATED [] is_a: UBERON:0018261 ! muscular coat of digestive tract @@ -323990,6 +338160,7 @@ relationship: part_of UBERON:0000162 ! cloaca id: UBERON:0012487 name: vaginal sphincter def: "A sphincter muscle that is part of a vagina." [OBOL:automatic] +subset: mouse_subset synonym: "sphincter of vagina" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004590 ! sphincter muscle @@ -324004,6 +338175,8 @@ relationship: present_in_taxon NCBITaxon:8509 ! Squamata id: UBERON:0012488 name: muscle layer of duodenum def: "A muscular coat that is part of a duodenum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "duodenal muscularis propria" EXACT [FMA:14944] synonym: "muscularis externa of duodenum" EXACT [FMA:14944] synonym: "muscularis propria of duodenum" RELATED [https://orcid.org/0000-0002-6601-2165] @@ -324020,6 +338193,8 @@ id: UBERON:0012489 name: muscle layer of colon def: "A muscular coat that is part of a colon." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "colon muscularis" RELATED [MA:0003198] synonym: "colonic muscularis propria" EXACT [FMA:14986] synonym: "muscular coat of colon" EXACT [FMA:14986] @@ -324040,6 +338215,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012490 name: muscle layer of anal canal def: "A muscular coat that is part of a anal canal." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anal canal muscularis propria" EXACT [] synonym: "anal muscularis propria" EXACT [FMA:15708] synonym: "muscular coat of anal canal" EXACT [] @@ -324059,6 +338236,8 @@ id: UBERON:0012494 name: muscularis mucosae of duodenum def: "A muscularis mucosa that is part of a duodenum." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lamina muscularis of duodenal mucous membrane" EXACT [FMA:15059] synonym: "lamina muscularis of duodenum" EXACT [] xref: EMAPA:27243 @@ -324079,6 +338258,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012497 name: muscularis mucosae of rectum def: "A muscularis mucosa that is part of a rectum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lamina muscularis of rectal mucosa" EXACT [FMA:15687] synonym: "lamina muscularis of rectal mucous membrane" EXACT [FMA:15687] xref: EMAPA:27093 @@ -324096,6 +338277,8 @@ id: UBERON:0012498 name: serosa of appendix def: "A serous membrane that is part of a vermiform appendix." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "appendiceal serosa" EXACT [FMA:14997] synonym: "appendix serosa" EXACT [FMA:14997] synonym: "serosa of vermiform appendix" EXACT [FMA:14997] @@ -324112,6 +338295,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012499 name: serosa of fallopian tube def: "A serous membrane that is part of a fallopian tube." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "serosa of oviduct" EXACT [FMA:18316] synonym: "serosa of uterine tube" EXACT [] synonym: "serous coat of uterine tube" EXACT [FMA:18316] @@ -324131,6 +338316,8 @@ relationship: part_of UBERON:0003889 ! fallopian tube id: UBERON:0012503 name: serosa of fundus of stomach def: "A serous membrane that is part of a fundus of stomach." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "visceral peritoneum of fundus of stomach" EXACT [FMA:17073] xref: EMAPA:27157 xref: FMA:17073 @@ -324144,6 +338331,8 @@ relationship: part_of UBERON:0001201 {source="FMA"} ! serosa of stomach id: UBERON:0012504 name: adventitia of esophagus def: "An adventitia that is part of a esophagus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "adventitia of oesophagus" EXACT [FMA:63006] synonym: "adventitious layer of esophagus" EXACT [FMA:63006] synonym: "esophageal adventitia" EXACT [FMA:63006] @@ -324161,6 +338350,7 @@ relationship: part_of UBERON:0001043 ! esophagus id: UBERON:0012520 name: forelimb epitrochlearis muscle def: "The superficial-most muscle of the anterior surface of the arm is the epitrochlearis. It has no homolog in humans." [http://biology.clc.uc.edu] +subset: mouse_subset synonym: "epitrochlearis" EXACT [BTO:0000423] synonym: "wing epitrochlearis muscle" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] xref: BTO:0000423 @@ -324171,6 +338361,8 @@ relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012615 name: umbilical smooth muscle def: "A smooth muscle tissue that is part of a umbilical cord." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: BTO:0001847 is_a: UBERON:0001135 ! smooth muscle tissue is_a: UBERON:0005292 ! extraembryonic tissue @@ -324244,6 +338436,8 @@ id: UBERON:0012648 name: ampulla of fallopian tube def: "The ampulla is the second portion of the uterine tube. It is an intermediate dilated portion, which curves over the ovary. It is the most common site of human fertilization. The word ampulla is from the Latin for flask." [Wikipedia:Ampulla_of_uterine_tube] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ampulla of fallopian tube" RELATED [Wikipedia:Ampulla_of_uterine_tube] synonym: "ampulla of oviduct" EXACT [FMA:18305] synonym: "ampulla of the fallopian tube" RELATED [Wikipedia:Ampulla_of_uterine_tube] @@ -324265,6 +338459,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0012649 name: anococcygeus muscle def: "One of a pair of thin sheets of smooth muscle inserting on the rectum, having a tendinous origin largely on sacral vertebrae." [PMID:9071980] +subset: human_subset +subset: mouse_subset synonym: "AcM" RELATED OMO:0003000 [PMID:9071980] synonym: "anococcygeus" EXACT [MA:0001533] xref: BTO:0005150 @@ -324279,6 +338475,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0012650 name: gastroduodenal junction def: "An anatomical junction that connects a stomach and connects a duodenum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:17046 xref: SCTID:264014000 is_a: UBERON:1100000 ! digestive tract junction @@ -324293,6 +338491,8 @@ relationship: part_of UBERON:0000945 ! stomach id: UBERON:0012651 name: mucosa of gastroduodenal junction def: "A mucosa that is part of a gastroduodenal junction." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "gastroduodenal mucosa" EXACT [BTO:0005415] xref: BTO:0005415 is_a: UBERON:0001199 ! mucosa of stomach @@ -324305,6 +338505,8 @@ relationship: part_of UBERON:0012650 ! gastroduodenal junction id: UBERON:0012652 name: colorectum def: "The subdivision of the digestive tract that consists of the colon and the rectum." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: BTO:0001613 xref: CALOHA:TS-1298 xref: NCIT:C54189 @@ -324318,6 +338520,8 @@ property_value: has_relational_adjective "colorectal" xsd:string [Term] id: UBERON:0012925 name: bronchial bud +subset: human_subset +subset: mouse_subset xref: BTO:0001641 is_a: UBERON:0005153 {source="GO:0060441"} ! epithelial bud is_a: UBERON:0005911 ! endo-epithelium @@ -324328,6 +338532,8 @@ id: UBERON:0013067 name: colorectal mucosa alt_id: UBERON:0019041 def: "A mucosa that is part of a colorectum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: BTO:0002435 is_a: UBERON:0001207 ! mucosa of large intestine intersection_of: UBERON:0000344 ! mucosa @@ -324338,6 +338544,8 @@ relationship: part_of UBERON:0012652 ! colorectum id: UBERON:0013068 name: palatine torus def: "A bony protuberance sometimes found on the hard palate at the junction of the intermaxillary suture and the transverse palatine suture." [http://palaeos.com/vertebrates/glossary/glossaryP.html] +subset: human_subset +subset: mouse_subset synonym: "crista palatina" RELATED [FMA:59201] synonym: "torus palatinus" EXACT OMO:0003011 [http://palaeos.com/vertebrates/glossary/glossaryP.html] xref: FMA:59201 @@ -324350,6 +338558,8 @@ property_value: terminology_notes "In accordance with the N. A. 'Torus palatinus id: UBERON:0013069 name: popliteal area def: "A depression on the ventral side of the femur, at the knee joint, between the condyles." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "knee pit" RELATED [Wikipedia:Popliteal_fossa] synonym: "popliteal fossa" EXACT [FMA:22525] synonym: "popliteal region" RELATED [] @@ -324385,6 +338595,7 @@ relationship: part_of UBERON:0007812 ! post-anal tail id: UBERON:0013074 name: cornual diverticulum def: "An extension of the frontal sinus into the horn." [http://cal.vet.upenn.edu/projects/grossanat/largemenu/rheadsinlr.htm] +subset: mouse_subset synonym: "cornual sinus" EXACT [] xref: SCTID:53994006 is_a: UBERON:0002553 ! anatomical cavity @@ -324399,6 +338610,7 @@ relationship: part_of UBERON:0006967 ! horn id: UBERON:0013075 name: venom gland duct def: "A duct that is part of a venom gland." [OBOL:automatic] +subset: mouse_subset synonym: "duct of venom gland" EXACT [] synonym: "venom duct" RELATED [BTO:0001855] xref: BTO:0001855 @@ -324426,6 +338638,8 @@ relationship: produced_by UBERON:0008976 ! snake venom gland id: UBERON:0013078 name: venom-injecting tooth def: "A fang that is used to inject venom into prey, through either a tube or a groove." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "fang" RELATED [] synonym: "grooved fang" RELATED [] synonym: "tubular fang" RELATED [] @@ -324463,9 +338677,11 @@ is_a: UBERON:0013076 {source="MESH"} ! snake venom id: UBERON:0013113 name: angular/surangular bone def: "Bone formed from the fusion of angular and surangular bones. Found in snakes." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008907 ! dermal bone -relationship: derived_from_ancestral_fusion_of UBERON:0011079 ! angular bone -relationship: derived_from_ancestral_fusion_of UBERON:0011636 ! surangular bone +relationship: has_fused_element UBERON:0011079 ! angular bone +relationship: has_fused_element UBERON:0011636 ! surangular bone relationship: part_of UBERON:0003113 ! dermatocranium [Term] @@ -324482,12 +338698,16 @@ relationship: part_of UBERON:0013116 ! venom gland musculature [Term] id: UBERON:0013115 name: pterygoideus glandulae muscle +subset: human_subset +subset: mouse_subset is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0013116 ! venom gland musculature [Term] id: UBERON:0013116 name: venom gland musculature +subset: human_subset +subset: mouse_subset is_a: UBERON:0008229 ! craniocervical region musculature relationship: part_of UBERON:0000033 ! head @@ -324496,6 +338716,8 @@ id: UBERON:0013118 name: sulcus of brain def: "A depression or fissure in the surface of the brain. It surrounds the gyri, creating the characteristic appearance of the brain in humans and other large mammals." [https://github.com/obophenotype/uberon/issues/315, Wikipedia:Sulcus_(neuroanatomy)] subset: cumbo +subset: human_subset +subset: mouse_subset synonym: "cerebral sulci" EXACT OMO:0003004 [DHBA:10610] synonym: "cerebral sulci" RELATED [NeuroNames:1208] synonym: "cerebral sulcus" RELATED [NeuroNames:1208] @@ -324523,6 +338745,8 @@ id: UBERON:0013119 name: haemal node def: "A lymphoid organ found in various mammals and some birds." [Wikipedia:Haemal_nodes] comment: Hemal nodes are characterized by the presence of large numbers of erythrocytes. Lymph nodes (see below) and hemal nodes share some similarities of structure, but really are fundamentally different organs both qualitatively and quantitatively. Both lymph and hemal nodes contain diffuse lymphatic tissue, and in most cases have nodular tissue in the form of germinal centers, as well. Like the lymph node, the hemal node has a cortex and a medulla, and germinal centers are frequently seen. There's a distinct capsule, and hemal nodes are served at the hilus by an afferent arteriole. [http://www.vetmed.vt.edu/education/curriculum/vm8054/labs/lab13/lab13.htm] +subset: human_subset +subset: mouse_subset synonym: "hemal node" EXACT [] xref: Wikipedia:Haemal_nodes is_a: UBERON:0002075 ! viscus @@ -324535,6 +338759,8 @@ relationship: part_of UBERON:0002405 ! immune system [Term] id: UBERON:0013120 name: eyelid submuscular connective tissue +subset: human_subset +subset: mouse_subset xref: EMAPA:37534 {source="MA:th"} xref: MA:0001253 is_a: UBERON:0003581 {source="MA"} ! eyelid connective tissue @@ -324542,6 +338768,8 @@ is_a: UBERON:0003581 {source="MA"} ! eyelid connective tissue [Term] id: UBERON:0013121 name: proximal epiphysis of phalanx of pes +subset: human_subset +subset: mouse_subset synonym: "basal epiphysis of phalanx of foot" EXACT [FMA:32888] synonym: "base of phalanx of foot" EXACT [FMA:32888] synonym: "basis phalangis (pedis)" EXACT [FMA:32888] @@ -324557,6 +338785,8 @@ relationship: part_of UBERON:0001449 ! phalanx of pes [Term] id: UBERON:0013122 name: distal epiphysis of phalanx of pes +subset: human_subset +subset: mouse_subset synonym: "caput phalangis (pedis)" EXACT [FMA:32890] synonym: "caput phalangis pedis" EXACT [FMA:TA] synonym: "distal end of phalanx of foot" EXACT [FMA:32890] @@ -324575,6 +338805,8 @@ relationship: part_of UBERON:0001449 ! phalanx of pes id: UBERON:0013124 name: left posterior cardinal vein def: "A posterior cardinal vein that is in_the_left_side_of a multicellular organism." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left postcardinal vein" EXACT [FMA:70316] synonym: "posterior cardinal vein left" EXACT [EHDAA2:0001486] xref: EHDAA2:0001486 @@ -324591,6 +338823,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0013125 name: left subcardinal vein def: "A subcardinal vein that is in_the_left_side_of a multicellular organism." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "subcardinal vein left" EXACT [EHDAA2:0001932] xref: EHDAA2:0001932 xref: SCTID:361451002 @@ -324606,6 +338840,8 @@ id: UBERON:0013126 name: vein of abdomen def: "A vein that is part of a abdomen." [OBOL:automatic] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "abdominal vein" EXACT [] xref: SCTID:281473003 is_a: UBERON:0001638 ! vein @@ -324620,6 +338856,8 @@ property_value: editor_note "TODO mirror representation of abdominal aorta" xsd: id: UBERON:0013127 name: pulmonary venous system def: "The part of the venous system that drains the lungs[Kardong]." [ISBN:0073040584, Wikipedia:Pulmonary_venous_system] +subset: human_subset +subset: mouse_subset synonym: "pulmonary venous circulatory system" EXACT [] xref: Wikipedia:Pulmonary_venous_system is_a: UBERON:0002049 ! vasculature @@ -324631,6 +338869,8 @@ property_value: external_definition "Pulmonary circulation is the half portion o id: UBERON:0013128 name: bulb of penis def: "Just before each crus of the penis meets its fellow it presents a slight enlargement, named by Kobelt the bulb of the corpus spongiosum penis. It is homologous to the vestibular bulbs in females." [Wikipedia:Bulb_of_penis] +subset: human_subset +subset: mouse_subset synonym: "bulb of the corpus cavernosum penis" RELATED [Wikipedia:Bulb_of_penis] synonym: "bulb of the corpus spongiousum penis" RELATED [Wikipedia:Bulb_of_penis] synonym: "bulb of the penis" RELATED [Wikipedia:Bulb_of_penis] @@ -324650,6 +338890,8 @@ relationship: part_of UBERON:0001299 {source="FMA"} ! glans penis id: UBERON:0013129 name: bulb of vestibule def: "Aggregations of erectile tissue that are an internal part of the clitoris. They can also be found throughout the vestibule: next to the clitoral body, clitoral crura, urethra, urethral sponge, and vagina." [Wikipedia:Vestibular_bulbs] +subset: human_subset +subset: mouse_subset synonym: "bulbus vestibuli" RELATED [Wikipedia:Vestibular_bulbs] synonym: "bulbus vestibuli vaginae" EXACT OMO:0003011 [Wikipedia:Vestibular_bulbs] synonym: "clitoral bulb" RELATED [Wikipedia:Vestibular_bulbs] @@ -324670,6 +338912,7 @@ property_value: external_definition "Cavernous organ, located in labium minus . [Term] id: UBERON:0013131 name: lobe of tail +subset: mouse_subset synonym: "fluke" NARROW [] synonym: "tail fluke" NARROW [] is_a: UBERON:0000064 ! organ part @@ -324680,6 +338923,8 @@ id: UBERON:0013132 name: penicillar arteriole def: "One of the small straight arteries of the red pulp of the spleen; a branch of the spleen central artery that supplies the red pulp[WP,modified]." [http://www.merriam-webster.com/medical/penicillus, https://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "penicillar artery" RELATED [] synonym: "penicilli" EXACT OMO:0003004 [http://www.merriam-webster.com/medical/penicilli] synonym: "penicillus" EXACT [FMA:16038] @@ -324697,6 +338942,8 @@ id: UBERON:0013133 name: superior phrenic artery def: "A phrenic artery that arises from the lower part of the thoracic aorta and is distributed to the posterior part of the upper surface of the diaphragm, and anastomoses with the musculophrenic and pericardiacophrenic arteries." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Superior_phrenic_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria phrenicea superioris" EXACT OMO:0003011 [FMA:4163, FMA:TA] synonym: "arteriae phrenicae superiores" EXACT OMO:0003011 [Wikipedia:Superior_phrenic_artery] synonym: "superior phrenic branches" RELATED [Wikipedia:Superior_phrenic_artery] @@ -324714,6 +338961,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0013135 name: interdental plate def: "The interdental plate refers to the bone-filled mesial-distal region between the teeth." [Wikipedia:Interdental_plate] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Interdental_plate is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure @@ -324727,6 +338976,8 @@ property_value: taxon_notes "In paleobiology, the presence or absence of the int id: UBERON:0013136 name: vein of lip def: "A vein that drains a lip." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "labial vein" RELATED [] synonym: "labial vein of face" EXACT [] synonym: "lip vein" EXACT [OBOL:automatic] @@ -324743,6 +338994,8 @@ relationship: tributary_of UBERON:0001653 {source="FMA"} ! facial vein id: UBERON:0013137 name: external pudendal artery def: "Either the superficial or deep external pudendal arteries." [Wikipedia:External_pudendal_artery] +subset: human_subset +subset: mouse_subset synonym: "arteriae pudendae externa" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "arteriae pudendales externa" EXACT OMO:0003011 [doi:10.1002/ca.23705] xref: SCTID:244308005 @@ -324757,6 +339010,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0013138 name: coronary ligament of liver def: "The coronary ligament of the liver refers to parts of the peritoneal reflections that hold the liver to the inferior surface of the diaphragm." [Wikipedia:Coronary_ligament] +subset: human_subset +subset: mouse_subset synonym: "coronary ligament" EXACT [FMA:15822] synonym: "ligamentum coronaria" RELATED [Wikipedia:Coronary_ligament] synonym: "ligamentum coronarium" EXACT [FMA:15822] @@ -324779,6 +339034,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l id: UBERON:0013139 name: ligament of liver def: "A nonskeletal ligament that is part of a liver." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hepatic ligament" EXACT [FMA:15820] synonym: "liver ligament" EXACT [] xref: FMA:15820 @@ -324797,6 +339054,8 @@ relationship: part_of UBERON:0002107 ! liver id: UBERON:0013140 name: systemic vein def: "Any vein within the general circulation that transports blood back to the right atrium of the heart." [ncithesaurus:Systemic_Vein] +subset: human_subset +subset: mouse_subset synonym: "systemic venous tree organ part" EXACT [FMA:66644] xref: FMA:66644 xref: NCIT:C33719 @@ -324811,6 +339070,8 @@ relationship: part_of UBERON:0004581 ! systemic venous system id: UBERON:0013141 name: capillary bed def: "A localized group of blood capillaries." [AEO:0001002] +subset: human_subset +subset: mouse_subset synonym: "microcirculatory bed" RELATED [] xref: AEO:0001002 xref: EMAPA:36291 @@ -324826,6 +339087,8 @@ id: UBERON:0013142 name: soleal vein def: "A vein that drains the soleus." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "soleus vein" EXACT [] synonym: "vein of soleus muscle" EXACT [] synonym: "vena solealis" EXACT OMO:0003011 [] @@ -324844,6 +339107,8 @@ name: gastrocnemius vein def: "A vein that drains the gastrocnemius." [OBOL:automatic] comment: divided in medial gastrocnemius vein (vena medialis gastrocnemii), lateral gastrocnemius vein (vena lateralis gastrocnemii), and intergemellar vein (Vena intergemellaris), the vein ascending between the two heads of the gastrocnemius[http://www.veinsurg.com/fr/biblio/echodoppler/echodoppler_11.php] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "vein of gastrocnemius muscle" EXACT [] synonym: "vena gastrocnemii" EXACT OMO:0003011 [] xref: SCTID:264481007 @@ -324859,6 +339124,8 @@ id: UBERON:0013144 name: vein of genicular venous plexus comment: The term genicular venous plexus (plexus venosus genicularis) should replace the term genicular veins. At the knee, deep veins do not correspond exactly to the branches of the popliteal artery (articular arteries). They are arranged in a complex plexus of interconnecting veins.[http://www.veinsurg.com/fr/biblio/echodoppler/echodoppler_11.php] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "genicular vein" RELATED [FMA:44559] xref: FMA:44559 is_a: UBERON:0001638 ! vein @@ -324870,6 +339137,8 @@ relationship: tributary_of UBERON:0001544 {source="FMA"} ! popliteal vein [Term] id: UBERON:0013145 name: accessory saphenous vein +subset: human_subset +subset: mouse_subset synonym: "posteromedial vein of thigh" EXACT [FMA:44320] xref: FMA:44320 xref: SCTID:302677006 @@ -324880,6 +339149,8 @@ relationship: tributary_of UBERON:0001363 {source="FMA"} ! great saphenous vein id: UBERON:0013146 name: venous system of brain def: "Missing definition for term UBERON:0013146. Please replace it using linked reference." [PMID:20557782, PMID:20566102] +subset: human_subset +subset: mouse_subset synonym: "brain venous system" EXACT [VHOG:0001328] synonym: "cranial venous system" RELATED [] xref: EHDAA2:0000185 @@ -324895,6 +339166,8 @@ relationship: part_of UBERON:0004582 {source="VHOG-modified"} ! venous system id: UBERON:0013147 name: early mesencephalic vesicle comment: gives rise to midbrain vesicle which gives rise to cerebral aqueduct +subset: human_subset +subset: mouse_subset synonym: "mesencephalic vesicle" EXACT [EHDAA2:0001102] xref: EHDAA2:0001102 is_a: UBERON:0013150 ! future brain vesicle @@ -324904,6 +339177,8 @@ relationship: part_of UBERON:0009616 {source="EHDAA2"} ! presumptive midbrain id: UBERON:0013148 name: early midbrain vesicle comment: develops into cerebral aqueduct +subset: human_subset +subset: mouse_subset synonym: "midbrain vesicle" EXACT [EHDAA2:0001103] xref: EHDAA2:0001103 xref: SCTID:361481005 @@ -324915,6 +339190,8 @@ relationship: part_of UBERON:0001891 {source="EHDAA2"} ! midbrain id: UBERON:0013149 name: hindbrain vesicle comment: gives rise of 4th ventricle +subset: human_subset +subset: mouse_subset synonym: "rhombencephalic vesicle" EXACT [EHDAA2:0000101] xref: EHDAA2:0000101 xref: SCTID:361482003 @@ -324924,6 +339201,8 @@ relationship: part_of UBERON:0007277 {source="EHDAA2"} ! presumptive hindbrain [Term] id: UBERON:0013150 name: future brain vesicle +subset: human_subset +subset: mouse_subset synonym: "brain vesicle" RELATED [] synonym: "early brain vesicle" EXACT [] synonym: "primary brain vesicle" NARROW [] @@ -324943,6 +339222,8 @@ property_value: external_ontology_notes "Note that some sources may treat the te id: UBERON:0013151 name: choroidal artery def: "One of two arteries (anterior and posterior choroidal artery) that supply blood to the choroid plexus, optic tract, hippocampus, globus pallidus, and other various brain regions." [ncithesaurus:Choroidal_Artery] +subset: human_subset +subset: mouse_subset synonym: "artery of choroid plexus" EXACT [] synonym: "choroid artery" EXACT [] xref: NCIT:C32310 @@ -324959,6 +339240,8 @@ id: UBERON:0013152 name: interventricular foramen of heart def: "A temporary opening between the developing ventricles of the heart. The ventricles arise as a single cavity is divided by the developing interventricular septum. Before the septum closes completely, the remaining opening between the two ventricles is termed the interventricular foramen." [Wikipedia:Primary_interventricular_foramen] comment: Phenotype notes: In some individuals, the foramen fails to close, leading to an interventricular septal defect known as a patent interventricular foramen +subset: human_subset +subset: mouse_subset synonym: "interventricular foramen" RELATED [] synonym: "primary interventricular foramen" RELATED [EHDAA2:0004064] xref: EHDAA2:0004064 @@ -324973,6 +339256,8 @@ relationship: part_of UBERON:0000948 ! heart id: UBERON:0013153 name: arachnoid villus def: "Small protrusions of the arachnoid mater into vascular sinuses, acting as one-way pressure-sensitive valves." [ISBN:0471888893, Wikipedia:Arachnoid_granulation] +subset: human_subset +subset: mouse_subset synonym: "arachnoid granulations" RELATED [Wikipedia:Arachnoid_granulation] synonym: "arachnoid villi" RELATED OMO:0003004 [Wikipedia:Arachnoid_granulation] synonym: "arachnoid villus" RELATED [Wikipedia:Arachnoid_granulation] @@ -324996,6 +339281,8 @@ property_value: external_definition "Arachnoid granulations (or arachnoid villi) [Term] id: UBERON:0013154 name: 1st arch maxillary endoderm +subset: human_subset +subset: mouse_subset synonym: "endoderm of maxillary component" EXACT [EMAPA:16390] xref: EHDAA2:0000040 xref: EMAPA:16390 @@ -325010,6 +339297,8 @@ relationship: part_of UBERON:0009722 {source="EHDAA2"} ! entire pharyngeal arch [Term] id: UBERON:0013155 name: 1st arch mandibular ectoderm +subset: human_subset +subset: mouse_subset synonym: "ectoderm of mandibular component" EXACT [EMAPA:16383] xref: EHDAA2:0000032 xref: EMAPA:16383 @@ -325024,6 +339313,8 @@ relationship: part_of UBERON:0007237 {source="EHDAA2"} ! 1st arch mandibular com [Term] id: UBERON:0013156 name: 1st arch mandibular endoderm +subset: human_subset +subset: mouse_subset synonym: "endoderm of mandibular component" EXACT [EMAPA:16384] xref: EHDAA2:0000033 xref: EMAPA:16384 @@ -325038,6 +339329,8 @@ relationship: part_of UBERON:0009722 {source="EHDAA2"} ! entire pharyngeal arch [Term] id: UBERON:0013157 name: 1st arch maxillary-mandibular cleft +subset: human_subset +subset: mouse_subset synonym: "1st arch maxillary-mandibular groove ectoderm" EXACT [EHDAA2:0000046] synonym: "ectoderm of maxillary-mandibular groove" EXACT [EMAPA:16395] xref: EHDAA2:0000046 @@ -325050,6 +339343,8 @@ relationship: part_of UBERON:0004362 {source="EHDAA2"} ! pharyngeal arch 1 id: UBERON:0013158 name: foregut-midgut junction gland def: "A gland that is part of a foregut-midgut junction." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "gland of foregut-midgut junction" EXACT [EMAPA:17065] xref: EHDAA2:0000574 xref: EMAPA:17065 @@ -325061,6 +339356,8 @@ relationship: part_of UBERON:0006235 ! foregut-midgut junction [Term] id: UBERON:0013159 name: epithalamus mantle layer +subset: human_subset +subset: mouse_subset synonym: "mantle layer epithalamus" EXACT [VHOG:0000913] synonym: "mantle layer of epithalamus" EXACT [] xref: EHDAA2:0000449 @@ -325076,6 +339373,8 @@ relationship: part_of UBERON:0001899 ! epithalamus [Term] id: UBERON:0013160 name: epithalamus ventricular layer +subset: human_subset +subset: mouse_subset synonym: "ventricular layer epithalamus" EXACT [VHOG:0000884] synonym: "ventricular layer of epithalamus" EXACT [] xref: EHDAA2:0000450 @@ -325091,6 +339390,8 @@ relationship: part_of UBERON:0001899 ! epithalamus id: UBERON:0013161 name: left lateral ventricle def: "A telencephalic ventricle that is in_the_left_side_of a telencephalon." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left telencephalic ventricle" EXACT [] xref: FMA:78450 xref: SCTID:368593005 @@ -325106,6 +339407,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0013162 name: right lateral ventricle def: "A telencephalic ventricle that is in_the_right_side_of a telencephalon." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "right telencephalic ventricle" EXACT [] xref: FMA:78449 xref: SCTID:368571000 @@ -325121,6 +339424,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0013164 name: molariform tooth def: "A molar or premolar." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset synonym: "cheek tooth" RELATED [ISBN:0073040584] synonym: "molariform" RELATED [ISBN:0073040584] synonym: "postcanine tooth" EXACT [http://www.termwiki.com/EN\:postcanine_teeth] @@ -325131,6 +339436,8 @@ relationship: has_part UBERON:0006844 ! cusp of tooth id: UBERON:0013165 name: epiglottic vallecula def: "A depression in front of the epiglottis, in which food is temporarily gathered as the animal chews." [ISBN:0073040584, Wikipedia:Epiglottic_vallecula] +subset: human_subset +subset: mouse_subset synonym: "vallecula" BROAD [] synonym: "vallecula epiglottica" EXACT OMO:0003011 [] synonym: "vallecula of epiglottis" EXACT [FMA:55037] @@ -325145,6 +339452,8 @@ property_value: external_definition "Region of surface of viscerocranial mucosa, id: UBERON:0013166 name: vallecula of cerebellum def: "On the upper surface of the cerebellum the vermis is elevated above the level of the hemispheres, but on the under surface it is sunk almost out of sight in the bottom of a deep depression between them; this depression is called the vallecula of the cerebellum, and lodges the posterior part of the medulla oblongata." [Wikipedia:Vallecula_of_cerebellum] +subset: human_subset +subset: mouse_subset synonym: "vallecula cerebelli" EXACT OMO:0003011 [FMA:75267] xref: BAMS:vlcb xref: FMA:75267 @@ -325159,6 +339468,8 @@ relationship: part_of UBERON:0001896 ! medulla oblongata id: UBERON:0013167 name: cricopharyngeal ligament def: "Laryngeal ligament that connects the cricoid cartilage to the pharynx[WP,modified]." [Wikipedia:Cricopharyngeal_ligament] +subset: human_subset +subset: mouse_subset synonym: "crico-pharyngeal ligament" EXACT [] synonym: "ligamentum cricopharyngeum" EXACT OMO:0003011 [Wikipedia:Cricopharyngeal_ligament] xref: FMA:55260 @@ -325175,6 +339486,8 @@ relationship: connects UBERON:0002375 ! cricoid cartilage id: UBERON:0013168 name: thyroepiglottic ligament def: "Laryngeal ligament that connects the epiglottis to the thyroid cartilage[WP,modified]." [Wikipedia:Thyroepiglottic_ligament] +subset: human_subset +subset: mouse_subset synonym: "ligamentum thyroepiglotticum" EXACT OMO:0003011 [] synonym: "thyroepiglottic ligament" EXACT [FMA:55230] xref: FMA:55230 @@ -325193,6 +339506,8 @@ relationship: connects UBERON:0001742 ! epiglottic cartilage id: UBERON:0013169 name: vestibular ligament def: "The vestibular fold is a fibroelastic band which passes from the ventral margin of the cuneiform cartilage to the cranial dorsal surface of the thyroid cartilage. It forms the support for the free edge of the vestibular fold." [MURDOCH:2193, Wikipedia:Vestibular_ligament] +subset: human_subset +subset: mouse_subset synonym: "ligamentum vestibulare" EXACT OMO:0003011 [Wikipedia:Vestibular_ligament] synonym: "ventricular ligament" EXACT [Wikipedia:Vestibular_ligament] synonym: "vestibular ligament of larynx" EXACT [] @@ -325210,6 +339525,8 @@ relationship: connects UBERON:0011157 ! cuneiform cartilage id: UBERON:0013170 name: cricoarytenoid ligament def: "Laryngeal ligament that connects the cricoid and arytenoid cartilages[WP,modified]." [Wikipedia:Cricoarytenoid_ligament] +subset: human_subset +subset: mouse_subset synonym: "crico-arytenoid ligament" EXACT [FMA:55261] synonym: "ligamentum cricoaryteneoideum" EXACT OMO:0003011 [Wikipedia:Cricoarytenoid_ligament] xref: FMA:55261 @@ -325226,6 +339543,8 @@ relationship: connects UBERON:0002375 ! cricoid cartilage id: UBERON:0013171 name: cricothyroid ligament def: "This attaches the caudal border of the thyroid cartilage to the ventral arch of the cricoid cartilage. Its sheetlike ventral portion is sometimes referred to as the cricothyroid membrane. Being elastic, it 'balances' movement at the hinge-like cricothyroid joint and determines the resting position of the larynx when the muscles are relaxed[MURDOCH]. The cricothyroid ligament is the larger part of the laryngeal membrane, continuing inferiorly as a median or anterior part and twin lateral ligaments. The median cricothyroid ligament is a flat band of white tissue joining the cricoid and thyroid cartilages, while the lateral cricothyroid ligament is also known as the cricothyroid membrane (also called conus elasticus)." [MURDOCH:483, Wikipedia:Cricothyroid_ligament] +subset: human_subset +subset: mouse_subset synonym: "crico-thyroid ligament" EXACT [] synonym: "ligamentum cricothyreoideum" EXACT OMO:0003011 [Wikipedia:Cricothyroid_ligament] xref: FMA:55233 @@ -325244,6 +339563,8 @@ relationship: connects UBERON:0002375 ! cricoid cartilage id: UBERON:0013172 name: cricotracheal ligament def: "The cricotracheal ligament connects the cricoid cartilage with the first ring of the trachea[WP]. The caudal border of the cricoid cartilage is joined to the first ring of the trachea by this ligament. It is an extrinsic laryngeal ligament. It resembles the fibrous membrane which connects the cartilaginous rings of the trachea to each other." [MURDOCH:486, Wikipedia:Cricotracheal_ligament] +subset: human_subset +subset: mouse_subset xref: FMA:55259 xref: NCIT:C32405 xref: SCTID:279553002 @@ -325260,6 +339581,8 @@ relationship: connects UBERON:0003604 ! trachea cartilage id: UBERON:0013173 name: anterior part of tympanic bone def: "The anterior aspect of the tympanum." [ncithesaurus:Anterior_Wall_of_the_Tympanum] +subset: human_subset +subset: mouse_subset synonym: "anterior surface of tympanic plate" EXACT [FMA:56478] synonym: "anterior wall of tympanic cavity" EXACT [] synonym: "anterior wall of tympanum" EXACT [] @@ -325389,6 +339712,8 @@ property_value: taxon_notes "May be homologous to melon organ" xsd:string id: UBERON:0013190 name: entotympanic bone def: "Entotympanics are independent elements present in the auditory bullae of various eutherians." [DOI:10.1023/A\:1020538313412] +subset: human_subset +subset: mouse_subset synonym: "entotyympanic" RELATED [] is_a: UBERON:0002513 {source="DOI:10.1023/A:1020538313412"} ! endochondral bone is_a: UBERON:0003457 ! head bone @@ -325399,6 +339724,8 @@ id: UBERON:0013191 name: ovarian cortex def: "The layer of the ovarian stroma lying immediately beneath the tunica albuginea, composed of connective tissue cells and fibers, among which are scattered primary and secondary (antral) follicles in various stages of development; the cortex varies in thickness according to the age of the individual, becoming thinner with advancing years; included in the follicles are the cumulus oophorus, membrana granulosa (and the granulosa cells inside it), corona radiata, zona pellucida, and primary oocyte; the zona pellucida, theca of follicle, antrum and liquor folliculi are also contained in the follicle; also in the cortex is the corpus luteum derived from the follicles." [MGI:anna] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cortex of ovary" EXACT [FMA:18613] synonym: "cortex ovarii (zona parenchymatosa)" EXACT [FMA:18613] @@ -325418,6 +339745,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0013192 name: ovarian medulla def: "Highly vascular stroma found in the center of the ovary that forms from embryonic mesenchyme and contains blood vessels, lymphatic vessels, and nerves; this stroma forms the tissue of the hilum by which the ovarian ligament is attached, and through which the blood vessels enter; it does not contain any ovarian follicles." [MGI:anna] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "medulla of ovary" EXACT [FMA:18616] synonym: "medulla ovarii (zona vasculosa)" EXACT [FMA:18616] @@ -325439,18 +339768,24 @@ id: UBERON:0013193 name: parakeratinized epithelium def: "An epithelium that is characterized by incomplete keratinization of the cells in the stratum corneum. The cells are flattened and composed primarily of packed tonofilaments. However, the cells may retain remnants of nuclei and other organelles." [http://www.dental.pitt.edu/informatics/periohistology/en/glossary.html] comment: Example: parts of oral epithelium +subset: human_subset +subset: mouse_subset is_a: UBERON:0000488 ! atypical epithelium [Term] id: UBERON:0013194 name: orthokeratinized epithelium def: "A keratinized epithelium in which the cells of the stratum corneum become very flat, loose their nuclei and cytoplasmic organelles and are now composed of densely packed tonofilaments cemented by filaggrin." [http://www.dental.pitt.edu/informatics/periohistology/en/glossary.html] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000488 ! atypical epithelium [Term] id: UBERON:0013195 name: parakeratinized epithelium of gingiva def: "A parakeratinized epithelium that is part of a gingiva." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "gingival parakeratinized epithelium" EXACT [] is_a: UBERON:0001949 ! gingival epithelium is_a: UBERON:0013193 ! parakeratinized epithelium @@ -325486,6 +339821,8 @@ relationship: surrounds UBERON:0003143 ! pupa [Term] id: UBERON:0013199 name: stria of neuraxis +subset: human_subset +subset: mouse_subset synonym: "neuraxis stria" EXACT [FMA:83854] synonym: "neuraxis striae" EXACT OMO:0003004 [] synonym: "stria" BROAD [] @@ -325497,6 +339834,8 @@ is_a: UBERON:0002316 ! white matter id: UBERON:0013201 name: olfactory pathway def: "Set of nerve fibers conducting impulses from olfactory receptors to the cerebral cortex. It includes the olfactory nerve; olfactory bulb; olfactory tract, olfactory tubercle, anterior perforated substance, and olfactory cortex. The term rhinencephalon is restricted to structures in the CNS receiving fibers from the olfactory bulb." [MESH:A08.186.211.577.699] +subset: human_subset +subset: mouse_subset synonym: "anterior perforated substance" RELATED [MESH:A08.186.211.577.699] synonym: "rhinencephalon" RELATED [MESH:A08.186.211.577.699] xref: MESH:D009833 @@ -325517,6 +339856,8 @@ relationship: part_of UBERON:0005725 ! olfactory system id: UBERON:0013203 name: hypogastrium def: "The hypogastrium (or hypogastric region, or pubic region) is an area of the human abdomen located below the navel." [Wikipedia:Hypogastrium] +subset: human_subset +subset: mouse_subset synonym: "hypogastric part of abdomen" EXACT [FMA:14602] synonym: "hypogastric region" EXACT [FMA:14602] synonym: "hypogastric region" RELATED [Wikipedia:Hypogastrium] @@ -325568,6 +339909,7 @@ relationship: part_of UBERON:0001003 ! skin epidermis id: UBERON:0013207 name: entepicondylar foramen def: "A canal through the medial epicondyle at the distal end of the vertebrate humerus, usually traversed by the median nerve and brachial artery." [http://www.jstor.org/discover/10.2307/2422468] +subset: mouse_subset xref: Wikipedia:Entepicondylar_foramen is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen @@ -325600,6 +339942,7 @@ property_value: taxon_notes "Primitive amniote feature found in primitive reptil id: UBERON:0013208 name: Grueneberg ganglion def: "An olfactory ganglion at the entrance of the nose of mammals that is involved in the detection of alarm pheromones and cold temperatures." [Wikipedia:Gr%C3%BCneberg_ganglion] +subset: mouse_subset synonym: "GG" RELATED OMO:0003000 [NCBIBook:NBK55971] synonym: "Gruneberg ganglion" RELATED [MA:0002891] synonym: "Grüneberg ganglion" EXACT [] @@ -325617,6 +339960,8 @@ relationship: in_taxon NCBITaxon:9989 ! Rodentia id: UBERON:0013211 name: cerumen gland def: "A specialized sudoriferous gland (sweat glands) located subcutaneously in the external auditory canal." [Wikipedia:Ceruminous_glands] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerumen-secreting gland" EXACT [] synonym: "ceruminous gland" EXACT [] @@ -325637,6 +339982,8 @@ property_value: structure_notes "Ceruminous glands are simple, coiled, tubular g id: UBERON:0013212 name: anal sac gland secretion def: "A bodily secretion that is produced by a gland of anal sac." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anal gland secretion" RELATED [] synonym: "castoreum" NARROW SENSU [NCBITaxon:29132] synonym: "civet" NARROW SENSU [NCBITaxon:9673] @@ -325664,6 +340011,8 @@ relationship: in_taxon NCBITaxon:9892 ! Giraffidae id: UBERON:0013216 name: udder def: "A large pendulous organ consisting of two or more mammary glands enclosed in a common envelope and each provided with a single nipple." [Wikipedia:Udder] +subset: human_subset +subset: mouse_subset xref: SCTID:27528008 xref: Wikipedia:Udder is_a: UBERON:0000481 ! multi-tissue structure @@ -325679,6 +340028,8 @@ property_value: external_definition "An udder is an organ formed of the mammary id: UBERON:0013217 name: zygomatic plate def: "In rodent anatomy, the zygomatic plate is a bony plate derived from the flattened front part of the zygomatic arch (cheekbone). At the back, it connects to the front (maxillary) root of the zygomatic arch, and at the top it is connected to the rest of the skull via the antorbital bridge. It is part of the maxillary bone, or upper jaw, which also contains the upper cheekteeth. Primitively, rodents have a nearly horizontal zygomatic plate. In association with specializations in zygomasseteric system, several distinct morphologies have developed across the order. The term is also used for an analogous structure in some South American typotheres, including Pseudotypotherium and Medistylus." [Wikipedia:Zygomatic_plate] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Zygomatic_plate is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -325690,6 +340041,8 @@ id: UBERON:0013218 name: rete mirabile def: "A rete mirabile (Latin for 'wonderful net'; plural retia mirabilia) is a complex of arteries and veins lying very close to each other, found in some vertebrates. The rete mirabile utilizes countercurrent blood flow within the net (blood flowing in opposite directions. ) It exchanges heat, ions, or gases between vessel walls so that the two bloodstreams within the rete maintain a gradient with respect to temperature, or concentration of gases or solutes." [Wikipedia:Rete_mirabile] comment: GAT in FMA +subset: human_subset +subset: mouse_subset synonym: "red body" RELATED [Wikipedia:Rete_mirabile] synonym: "red gland" RELATED [Wikipedia:Rete_mirabile] synonym: "rete mirabilia" RELATED [Wikipedia:Rete_mirabile] @@ -325727,6 +340080,7 @@ property_value: taxon_notes "Crocodilians have a completely separated ventricle id: UBERON:0013221 name: caudofemoralis def: "The caudofemoralis (from the latin cauda, tail and femur, thighbone) is a muscle found in the pelvic limb of mostly all animals possessing a tail, since it is a synapomorphy appeared on the Archosauria clade. It is thus found in felids (cats) and Mustela ('Weasels'), but also on crocodiles and birds." [Wikipedia:Caudofemoralis] +subset: mouse_subset synonym: "caudofemoralis muscle" EXACT [] synonym: "M. caudofemoralis" EXACT [] xref: EMAPA:36226 @@ -325757,6 +340111,8 @@ property_value: function_notes "The notches have been interpreted as part of an id: UBERON:0013223 name: alveolar gland def: "In contrast to tubular glands, in the second main variety of gland, the secretory portion is enlarged and the lumen variously increased in size. These are termed alveolar glands (or saccular glands, or acinar glands, or acinous glands). Some sources draw a clear distinction between acinar and alveolar glands, based upon the shape of the lumen. A further complication in the case of the alveolar glands may occur in the form of still smaller saccular diverticuli growing out from the main sacculi. These are termed alveoli. The term 'tubulo-alveolar' (or 'tubulo-acinar', or 'compound tubulo-acinar', or 'compound tubulo-alveolar') is used to describe glands that start out as branched tubular, and branch further to terminate in alveoli. This type of gland is found in the salivary glands, esophagus, and mammary glands. The term 'racemose gland' is used to describe a 'compound alveolar gland' or 'compound acinar gland'." [Wikipedia:Alveolar_gland] +subset: human_subset +subset: mouse_subset synonym: "acinar gland" RELATED [Wikipedia:Alveolar_gland] synonym: "acinous gland" RELATED [Wikipedia:Alveolar_gland] synonym: "alveolar gland" RELATED [Wikipedia:Alveolar_gland] @@ -325769,6 +340125,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/99/Gr id: UBERON:0013224 name: Ciaccio's gland def: "Ciaccio's glands are small tubular accessory lacrimal glands (glandulae lacrimales accessoriae) found in the lacrimal caruncle of the eyelid. They are located in the upper border of the tarsus, approximately in the middle between the extremities of the tarsal glands. Sometimes they are situated slightly above the tarsus. There are usually 2 to 5 of these glands in the upper eyelid, and their function is to produce tears which are secreted onto the surface of the conjunctiva. They are named after Italian anatomist Giuseppe Vincenzo Ciaccio (1824b1901), who described these glands in 1874. They are sometimes called Wolfring's glands after Polish ophthalmologist Emilj von Wolfring (1832-1906), who described them during the same time period as did Ciaccio. Another type of accessory lacrimal gland are Krause's glands, which are smaller, more numerous than Ciaccio's glands and are found along the superior and inferior fornices of the conjunctival sac." [Wikipedia:Ciaccio's_glands] +subset: human_subset +subset: mouse_subset synonym: "gland of Wolfring" EXACT [ncithesaurus:Gland_of_Wolfring, Wikipedia:Ciaccio's_glands] synonym: "gland of Wolfring and Ciacco" EXACT [] synonym: "Wolfring's gland" EXACT [Wikipedia:Ciaccio's_glands] @@ -325784,6 +340142,8 @@ relationship: part_of UBERON:0001711 {source="ncithesaurus"} ! eyelid id: UBERON:0013226 name: accessory lacrimal gland def: "Serous gland with distended lumen. It includes the gland of Krause in the lacrimal sac and the gland of Wolfring on the inner surface of the upper eyelid. (NCI)." [ncithesaurus:Accessory_Lacrimal_Gland] +subset: human_subset +subset: mouse_subset synonym: "glandulae lacrimales accessoriae" EXACT OMO:0003011 [] xref: FMA:320425 xref: NCIT:C74586 @@ -325796,6 +340156,8 @@ property_value: editor_note "may be re-classified as a sibling of lacrimal gland id: UBERON:0013227 name: crypt of Henle def: "Crypts of Henle are microscopic pockets found in scattered sections of the conjunctiva around the eyeball. They are responsible for secreting mucin, a proteinous substance that makes up the inner layer of tears. It coats the cornea to provide a hydrophilic layer that allows for even distribution of the tear film. The layer of mucin allows tears to glide evenly across the eye's surface[WP]." [Wikipedia:Crypts_of_Henle] +subset: human_subset +subset: mouse_subset synonym: "crypts of Henle" EXACT [Wikipedia:Crypts_of_Henle] synonym: "gland of Henle" EXACT [] synonym: "Henle's gland" EXACT [Wikipedia:Crypts_of_Henle] @@ -325807,6 +340169,8 @@ is_a: UBERON:0013226 ! accessory lacrimal gland id: UBERON:0013228 name: sweat gland of eyelid def: "Glands of Moll, also known as ciliary glands, are modified apocrine sweat glands that are found on the margin of the eyelid. They are next to the base of the eyelashes, and anterior to the Meibomian glands within the distal eyelid margin. These glands are relatively large and tubular-shaped. The glands of Moll are named after Dutch oculist Jacob Anton Moll (1832-1914). Glands of Moll empty into the adjacent lashes. Glands of Moll and Zeis secrete lipid that adds to the superficial layer of the tear film, retarding evaporation. The glands of Moll are prone to infection and blockage of its duct with sebum and cell debris. Blockage of the gland's duct causes swelling which can manifest itself as a stye." [Wikipedia:Gland_of_Moll] +subset: human_subset +subset: mouse_subset synonym: "ciliary gland" EXACT [FMA:59159] synonym: "ciliary gland of moll" EXACT [FMA:59159] synonym: "ciliary sweat gland of eyelid" EXACT [FMA:59159] @@ -325827,6 +340191,8 @@ relationship: part_of UBERON:0001711 ! eyelid id: UBERON:0013229 name: eyelid gland def: "Any gland that is part of an eyelid. This includes sebaceous glands (Zeis gland, tarsal gland) and sweat glands (Moll's gland)." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "gland of eyelid" EXACT [] xref: SCTID:280574000 is_a: UBERON:0004121 ! ectoderm-derived structure @@ -325861,6 +340227,8 @@ property_value: curator_notes "This gland is distinct from the other medial ocul id: UBERON:0013231 name: sebaceous gland of eyelid def: "Any of the sebaceous glands that are in the eyelid. Examples: gland of Zeis (services eyelashes), gland of Meibom (tarsal gland - unconnected to eyelids)." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003484 ! eye sebaceous gland is_a: UBERON:0013229 ! eyelid gland intersection_of: UBERON:0001821 ! sebaceous gland @@ -325871,6 +340239,8 @@ relationship: part_of UBERON:0001711 ! eyelid id: UBERON:0013232 name: serous acinus def: "The secretory unit of a serous gland. The acinar portion is composed of serous secreting cells." [http://orcid.org/0000-0002-6601-2165, http://www.siumed.edu/~dking2/intro/glands.htm] +subset: human_subset +subset: mouse_subset synonym: "acinus of serous gland" EXACT [] xref: FMA:86279 is_a: UBERON:0011858 ! acinus of exocrine gland @@ -325894,6 +340264,7 @@ property_value: function_notes "The gland's function is similar to that of the k id: UBERON:0013234 name: violet gland def: "The violet gland or supracaudal gland is an important gland located on the upper surface of the tail of certain mammals, including European badgers and canids such as foxes, wolves the domestic dog, as well as the domestic cat. It is used for intra species signalling, scent marking, and contributes to the strong odor of foxes in particular." [Wikipedia:Violet_gland] +subset: mouse_subset synonym: "supracaudal gland" RELATED [] xref: Wikipedia:Violet_gland is_a: UBERON:0011252 ! scent gland @@ -325904,6 +340275,8 @@ relationship: part_of UBERON:0007812 ! post-anal tail id: UBERON:0013235 name: ventrum def: "A major organism subdivisionthat is the entire part of an anatomical structure ventral to a horizontal plane and bounded on one side by the same horizontal plane." [BSPO:0000068, UBERONREF:0000006] +subset: human_subset +subset: mouse_subset synonym: "front" BROAD [] synonym: "front of body proper" EXACT [FMA:259204] synonym: "ventral part of organism" EXACT [] @@ -325918,6 +340291,8 @@ property_value: has_relational_adjective "ventral" xsd:string id: UBERON:0013236 name: ventral trunk def: "The subdivision of the trunk that overlaps with the ventrum." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "anterolateral part of trunk" EXACT [FMA:25055] synonym: "front of trunk" EXACT [FMA:25055] synonym: "trunk front" EXACT [FMA:25055] @@ -325931,6 +340306,8 @@ property_value: external_definition "Subdivision of trunk which is demarcated fr id: UBERON:0013237 name: genital papilla of vulva def: "The genital papilla is a part of female external genitalia not present in humans, which appears as a small, fleshy flab of tissue. The papilla covers the opening of the vagina." [Wikipedia:Genital_papilla] +subset: human_subset +subset: mouse_subset synonym: "genital papillae" RELATED OMO:0003004 [] synonym: "mammalian genital papilla" EXACT [] xref: Wikipedia:Genital_papilla @@ -325941,6 +340318,8 @@ relationship: part_of UBERON:0000997 ! mammalian vulva [Term] id: UBERON:0013238 name: future glans +subset: human_subset +subset: mouse_subset is_a: UBERON:0005423 ! developing anatomical structure union_of: UBERON:0013239 ! future glans penis union_of: UBERON:0013240 ! future glans clitoris @@ -325951,6 +340330,8 @@ relationship: part_of UBERON:0011757 ! differentiated genital tubercle id: UBERON:0013239 name: future glans penis def: "A future glans that is part of a male genital tubercle." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "glans of male genital tubercle" EXACT [] xref: EMAPA:29252 is_a: UBERON:0013238 ! future glans @@ -325962,6 +340343,8 @@ relationship: part_of UBERON:0006261 {source="EMAPA"} ! male genital tubercle id: UBERON:0013240 name: future glans clitoris def: "A future glans that is part of a female genital tubercle." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "glans of female genital tubercle" EXACT [] xref: EMAPA:19170 is_a: UBERON:0013238 ! future glans @@ -325973,6 +340356,8 @@ relationship: part_of UBERON:0006233 {source="EMAPA"} ! female genital tubercle id: UBERON:0013241 name: embryonic urethral groove def: "The precursor of the urethra." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "sulcus urethralis primarius" EXACT OMO:0003011 [Wikipedia:Urethral_groove] synonym: "urethral groove" EXACT [] synonym: "urethral sulcus" EXACT [] @@ -325986,6 +340371,8 @@ property_value: taxon_notes "In humans, the urethral groove is a temporary linea id: UBERON:0013244 name: vaginal plate def: "The vaginal plate is a precursor to the inferior portion of the vagina. They form from sinovaginal bulbs." [Wikipedia:Vaginal_plate] +subset: human_subset +subset: mouse_subset xref: NCIT:C34325 xref: UMLS:C1519928 {source="ncithesaurus:Vaginal_Plate"} xref: Wikipedia:Vaginal_plate @@ -325997,6 +340384,8 @@ relationship: part_of UBERON:0000164 ! primitive urogenital sinus id: UBERON:0013245 name: sinovaginal bulb def: "Solid evaginations of the UG sinus that develops into a vaginal plate that which will will eventually canalize to form the inferior portion of the vagina." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: NCIT:C34297 xref: UMLS:C1519330 {source="ncithesaurus:Sinovaginal_Bulb"} is_a: UBERON:0002050 ! embryonic structure @@ -326006,6 +340395,8 @@ relationship: part_of UBERON:0000164 ! primitive urogenital sinus id: UBERON:0013247 name: male paramesonephric duct def: "An epithelial tube that develops from a Mullerian duct in a male. Later degenerates." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "degenerating mesonephric portion of male paramesonephric duct" RELATED [EMAPA:29161] xref: EHDAA2:0001052 xref: EMAPA:29161 @@ -326024,6 +340415,8 @@ property_value: editor_note "consider separating the duct from the degenerating id: UBERON:0013248 name: paradidymis def: "A small collection of convoluted tubules, situated in front of the lower part of the cord above the head of the epididymis. These tubes are lined with columnar ciliated epithelium, and probably represent the remains of a part of the Wolffian body but are functionless and vestigial. The Wolffian body operates as a kidney (metanephros) in fishes and amphibians, but the corresponding tissue is co-opted to form parts of the male reproductive system in other classes of vertebrate. The paradidymis represents a remnant of an unused, atrophied part of the Wolffian body[WP,modified]." [Wikipedia:Paradidymis] +subset: human_subset +subset: mouse_subset synonym: "organ of Giraldes" EXACT [FMA:74055] synonym: "organ of Giraldés" EXACT [] synonym: "Waldeyer's organ" EXACT [FMA:74055] @@ -326040,6 +340433,8 @@ relationship: part_of UBERON:0000079 ! male reproductive system id: UBERON:0013249 name: paroophoron def: "A collection of a few scattered rudimentary tubules child, situated in the broad ligament between the epoophoron and the uterus." [Wikipedia:Paroophoron] +subset: human_subset +subset: mouse_subset synonym: "Kobelt's tubules" EXACT [FMA:18692] synonym: "parooephoron" RELATED [Wikipedia:Paroophoron] synonym: "paroöphoron" RELATED [Wikipedia:Paroophoron] @@ -326056,6 +340451,8 @@ relationship: part_of UBERON:0000474 ! female reproductive system id: UBERON:0013250 name: vesicular appendage of epoophoron def: "In connection with the fimbriae of the uterine tube, or with the broad ligament close to them, there are frequently one or more small pedunculated vesicles. These are termed the vesicular appendages of the epoophoron." [Wikipedia:Vesicular_appendages_of_epoophoron] +subset: human_subset +subset: mouse_subset synonym: "appendage of epoophoron" RELATED [] synonym: "appendage of epoöphoron" RELATED [] synonym: "appendices vesiculosae" RELATED [Wikipedia:Vesicular_appendages_of_epoophoron] @@ -326079,6 +340476,8 @@ property_value: external_definition "one of the small pedunculated structures at id: UBERON:0013262 name: remnnant of ductus deferens def: "Remnant in a female of the portion of the embryonic mesonephric duct that develops into the ductus deferens in males." [http://www.medilexicon.com/medicaldictionary.php?t=98549] +subset: human_subset +subset: mouse_subset synonym: "ductus deferens vestige" EXACT [FMA:76609] synonym: "ductus deferens vestigialis" EXACT OMO:0003011 [] synonym: "vestige of ductus deferens" EXACT [FMA:76609] @@ -326092,6 +340491,8 @@ relationship: part_of UBERON:0000474 ! female reproductive system id: UBERON:0013277 name: remnant of processus vaginalis def: "Incompletely obliterated remnants of the vaginal process of the peritoneum remaining in the spermatic cord." [http://www.medilexicon.com/medicaldictionary.php?t=98550] +subset: human_subset +subset: mouse_subset synonym: "processus vaginalis vestige" EXACT [FMA:77300] synonym: "vestige of processus vaginalis" EXACT [FMA:77300] xref: FMA:77300 @@ -326104,6 +340505,8 @@ relationship: part_of UBERON:0005352 ! spermatic cord id: UBERON:0013278 name: canal of Nuck def: "A patent pouch of peritoneum extending into the labia majora of women. It is analogous to the processus vaginalis in males. The pouch accompanies the gubernaculum during development of the urinary and reproductive organs, more specifically during the descent of the ovaries, and normally obliterates." [Wikipedia:Canal_of_Nuck] +subset: human_subset +subset: mouse_subset synonym: "canal of nuck" RELATED [Wikipedia:Canal_of_Nuck] synonym: "nuck%27s canal" RELATED [Wikipedia:Canal_of_Nuck] synonym: "persistent processus vaginalis" RELATED [MP:0009217] @@ -326118,6 +340521,8 @@ relationship: part_of UBERON:0000474 ! female reproductive system id: UBERON:0013279 name: diaphysis of fibula def: "A diaphysis that is part of a fibula[Automatically generated definition]." [OBOL:automatic, Wikipedia:Body_of_fibula] +subset: human_subset +subset: mouse_subset synonym: "body of fibula" EXACT [FMA:33738] synonym: "corpus fibulae" EXACT [FMA:TA] synonym: "fibula diaphysis" EXACT [FMA:33738] @@ -326137,6 +340542,8 @@ property_value: external_definition "The body of fibula presents four borders - id: UBERON:0013280 name: diaphysis of tibia def: "A diaphysis that is part of a tibia." [OBOL:automatic, Wikipedia:Body_of_tibia] +subset: human_subset +subset: mouse_subset synonym: "body of the tibia" RELATED [Wikipedia:Body_of_tibia] synonym: "body of tibia" EXACT [FMA:33125] synonym: "corpus tibiae" EXACT [FMA:TA] @@ -326159,6 +340566,8 @@ property_value: external_definition "The body of the tibia has three borders and id: UBERON:0013397 name: stratum argenteum of choroid def: "A silver reflective layer in the outer choroid, adjacent to the sclera, frequently present in fish larvae but not as frequent in adults." [PMID:14738502] +subset: human_subset +subset: mouse_subset synonym: "choroid stratum argenteum" EXACT [] synonym: "stratum argenteum" BROAD [PMID:14738502] is_a: UBERON:0000957 ! lamina @@ -326174,6 +340583,8 @@ id: UBERON:0013398 name: choroidal gland def: "A gland that is part of a optic choroid." [OBOL:automatic] comment: Requires review +subset: human_subset +subset: mouse_subset is_a: UBERON:0001593 {source="FEED:rd"} ! venous plexus is_a: UBERON:0002203 ! vasculature of eye is_a: UBERON:0011362 ! cranial blood vasculature @@ -326185,6 +340596,8 @@ property_value: external_definition "Teleosts bear a body of capillary adjacent [Term] id: UBERON:0013399 name: blood vessel layer of choroid +subset: human_subset +subset: mouse_subset synonym: "Haller's layer" NARROW [FMA:58435] synonym: "lamina choroideae vasculosa" EXACT OMO:0003011 [FMA:58435, FMA:TA] synonym: "lamina vasculosa (choroid)" EXACT [FMA:58435] @@ -326203,6 +340616,8 @@ property_value: external_definition "a layer of medium-diameter blood vessels of id: UBERON:0013403 name: asterion of skull def: "The asterion is the point on the skull corresponding to the posterior end of the parietomastoid suture." [Wikipedia:Asterion_(anatomy)] +subset: human_subset +subset: mouse_subset synonym: "asterion" RELATED [Wikipedia:Asterion_(anatomy)] xref: FMA:76625 xref: Wikipedia:Asterion_(anatomy) @@ -326214,6 +340629,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/56/As id: UBERON:0013406 name: bregma def: "The bregma is the anatomical point on the skull at which the coronal suture is intersected perpendicularly by the sagittal suture." [Wikipedia:Bregma] +subset: human_subset +subset: mouse_subset xref: FMA:264776 xref: Wikipedia:Bregma is_a: UBERON:0006983 {source="FMA"} ! anatomical point @@ -326227,6 +340644,8 @@ property_value: external_definition "Anatomical cranial point where the coronal id: UBERON:0013411 name: cranial cavity def: "Anatomical cavity that is the lumen of the skull and contains the brain." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "cavitas cranii" EXACT OMO:0003011 [FMA:9644, FMA:TA] synonym: "intracranial cavity" RELATED [Wikipedia:Cranial_cavity] synonym: "intracranial space" RELATED [Wikipedia:Cranial_cavity] @@ -326249,6 +340668,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ee/Sc id: UBERON:0013412 name: crotaphion def: "The crotaphion refers to two points on the skull at the tips of the greater wing of sphenoid bone. It is near the pterion." [Wikipedia:Crotaphion] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Crotaphion is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull @@ -326257,6 +340678,8 @@ relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull id: UBERON:0013417 name: epicranium def: "The Epicranium is the medical term for the collection of structures covering the cranium. It consists of the muscles, aponeurosis, and skin." [Wikipedia:Epicranium] +subset: human_subset +subset: mouse_subset xref: SCTID:362625008 xref: Wikipedia:Epicranium is_a: UBERON:0034921 ! multi organ part structure @@ -326268,6 +340691,8 @@ property_value: editor_note "TODO - add parts" xsd:string id: UBERON:0013420 name: groove for sigmoid sinus def: "Groove for Sigmoid Sinus is a groove in the posterior cranial fossa." [Wikipedia:Groove_for_sigmoid_sinus] +subset: human_subset +subset: mouse_subset xref: FMA:57122 xref: Wikipedia:Groove_for_sigmoid_sinus is_a: UBERON:4200230 ! surface of bone @@ -326278,6 +340703,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/81/Gr id: UBERON:0013422 name: infratemporal fossa def: "The infratemporal fossa is an irregularly shaped cavity, situated below and medial to the zygomatic arch. Boundaries defined by: anteriorly, by the infratemporal surface of the maxilla and the ridge which descends from its zygomatic process posteriorly, by the articular tubercle of the temporal and the spinal angularis of the sphenoid superiorly, by the greater wing of the sphenoid below the infratemporal crest, and by the under surface of the temporal squama, containing the foramen ovale, which transmits the mandibular branch of the trigeminal nerve, and the foramen spinosum, which transmits the middle meningeal artery inferiorly, by the medial pterygoid muscle attaching to the mandible medially, by the lateral pterygoid plate laterally, by the ramus of mandible, which contains the mandibular foramen, leading to the mandibular canal through which the inferior alveolar nerve passes. This also contains the lingula, a triangular piece of bone that overlies the mandibular foramen antero-medially. Finally, the mylohyoid groove descends obliquely transmitting the mylohyoid nerve the only motor branch of the anterior division of the trigeminal nerve." [Wikipedia:Infratemporal_fossa] +subset: human_subset +subset: mouse_subset synonym: "fossa infratemporalis" RELATED [Wikipedia:Infratemporal_fossa] synonym: "infratemporal" RELATED [Wikipedia:Infratemporal_fossa] synonym: "pterygomaxillary fossa" RELATED [Wikipedia:Infratemporal_fossa] @@ -326293,6 +340720,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gr id: UBERON:0013423 name: jugal point def: "The jugal point is the point at the anterior end of the upper border of the zygomatic arch where the masseteric and maxillary edges meet at an angle." [Wikipedia:Jugal_point] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Jugal_point is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull @@ -326301,6 +340730,8 @@ relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull id: UBERON:0013424 name: anatomical point connecting sagittal and lambdoidal sutures def: "The occipital angle is rounded and corresponds with the point of meeting of the sagittal and lambdoidal sutures-a point which is termed the lambda (after the Greek letter of the same name); in the fetus this part of the skull is membranous, and is called the posterior fontanelle." [Wikipedia:Lambda_(anatomy)] +subset: human_subset +subset: mouse_subset synonym: "lambda" BROAD [Wikipedia:Lambda_(anatomy)] synonym: "posterior fontanelle" RELATED [Wikipedia:Lambda_(anatomy)] xref: FMA:264773 @@ -326318,6 +340749,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Gr id: UBERON:0013426 name: obelion def: "The point of the sagittal suture which is on a level with the parietal foramina." [Wikipedia:Obelion] +subset: human_subset +subset: mouse_subset xref: FMA:264774 xref: Wikipedia:Obelion is_a: UBERON:0006983 ! anatomical point @@ -326327,6 +340760,8 @@ relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull id: UBERON:0013427 name: occipital bun def: "A prominent bulge, or projection, of the occipital bone at the back of the skull[WP]." [Wikipedia:Occipital_bun] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Occipital_bun is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001676 ! occipital bone @@ -326338,6 +340773,8 @@ property_value: taxon_notes "Occipital buns are important in scientific descript id: UBERON:0013428 name: ophryon def: "The ophryon is the point in the forehead just above the optic foramen, or eyesocket, and glabella." [Wikipedia:Ophryon] +subset: human_subset +subset: mouse_subset xref: FMA:284930 xref: Wikipedia:Ophryon is_a: UBERON:0006983 ! anatomical point @@ -326347,6 +340784,8 @@ relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull id: UBERON:0013436 name: porion def: "The porion is the point on the human skull located at the upper margin of each ear canal (external auditory meatus, external acoustic meatus). It underlies the tragus. The anatomical landmark has significance in biological anthropology and craniometry." [Wikipedia:Porion] +subset: human_subset +subset: mouse_subset xref: FMA:264711 xref: Wikipedia:Porion is_a: UBERON:0006983 ! anatomical point @@ -326357,6 +340796,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gr id: UBERON:0013442 name: postorbital process def: "The Postorbital Process marks the rear, upper edge of the eye socket and is a projection from the frontal bone." [Wikipedia:Postorbital_process] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Postorbital_process is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ @@ -326366,6 +340807,8 @@ relationship: part_of UBERON:0000209 ! tetrapod frontal bone id: UBERON:0013445 name: pterygomaxillary fissure def: "The pterygomaxillary fissure is a fissure of the human skull. It is vertical, and descends at right angles from the medial end of the inferior orbital fissure; it is a triangular interval, formed by the divergence of the maxilla from the pterygoid process of the sphenoid. It connects the infratemporal with the pterygopalatine fossa, and transmits the terminal part of the maxillary artery. Alveolar branches of the maxillary nerve go from the pterygopalatine fossa to the infratemporal region via this fissure. In older texts, the pterygomaxillary fissure is sometimes called the pterygopalatine fissure." [Wikipedia:Pterygomaxillary_fissure] +subset: human_subset +subset: mouse_subset xref: FMA:76627 xref: Wikipedia:Pterygomaxillary_fissure is_a: UBERON:0006800 {source="FMA"} ! anatomical line @@ -326376,6 +340819,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a7/Gr id: UBERON:0013447 name: sagittal crest of skull def: "A ridge of bone running lengthwise along the midline of the top of the skull of many mammalian and reptilian skulls and serves as an attachment site for the temporailis muscle[WP,modified]." [Wikipedia:Sagittal_crest] +subset: human_subset +subset: mouse_subset synonym: "crista sagittalis externa" EXACT [] synonym: "sagittal crest" BROAD [] synonym: "sagittal ridge" RELATED [] @@ -326391,6 +340836,8 @@ property_value: taxon_notes "Skulls of some dinosaur species, including tyrannos id: UBERON:0013448 name: sagittal keel def: "The Sagittal keel (torus) is a thickening of bone on part or all of the midline of the frontal bone, or parietal bones where they meet along the sagittal suture, or on both bones.." [Wikipedia:Sagittal_keel] +subset: human_subset +subset: mouse_subset synonym: "sagittal torus" RELATED [] xref: Wikipedia:Sagittal_keel is_a: UBERON:0005913 ! zone of bone organ @@ -326412,6 +340859,8 @@ relationship: part_of UBERON:0001684 ! mandible id: UBERON:0013454 name: spheno-maxillary fossa def: "The speno-maxillary fossa is a small triangular space situated at the angle of the junction of the spheno-maxillary and pterygo-maxillary fissures, and placed beneath the apex of the orbit. It is formed above by the under surface of the body of the sphenoid and by the orbital process of the palate bone." [Wikipedia:Spheno-maxillary_fossa] +subset: human_subset +subset: mouse_subset xref: NCIT:C33584 xref: UMLS:C1519450 {source="ncithesaurus:Sphenomaxillary_Fossa"} xref: Wikipedia:Spheno-maxillary_fossa @@ -326422,6 +340871,8 @@ relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull id: UBERON:0013455 name: spheno-petrosal fissure def: "The sphenopetrosal fissure (or sphenopetrosal suture) is the cranial suture between the sphenoid bone and the petrous portion of the temporal bone. It is in the middle cranial fossa." [Wikipedia:Sphenopetrosal_fissure] +subset: human_subset +subset: mouse_subset synonym: "fissura sphenopetrosa" EXACT [FMA:TA] synonym: "sphenopetrosal fissure" EXACT [FMA:75038] xref: FMA:75038 @@ -326439,6 +340890,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/81/Gr id: UBERON:0013459 name: stephanion def: "The point where the upper temporal line cuts the coronal suture is named the stephanion." [Wikipedia:Stephanion] +subset: human_subset +subset: mouse_subset xref: FMA:264723 xref: Wikipedia:Stephanion is_a: UBERON:0006983 ! anatomical point @@ -326450,6 +340903,8 @@ id: UBERON:0013460 name: suprainiac fossa alt_id: UBERON:0013470 def: "The suprainiac fossa is an elliptic depression on the occiput above the superior nuchal line, or inion." [Wikipedia:Suprainiac_fossa] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Suprainiac_fossa is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull @@ -326459,6 +340914,8 @@ relationship: present_in_taxon NCBITaxon:63221 {source="Wikipedia:Neanderthal_an id: UBERON:0013462 name: sylvian point def: "The Sylvian point is the point on the human skull nearest the Sylvian fissure and is located about 30 millimeters behind the Zygomatic process of frontal bone." [Wikipedia:Sylvian_point] +subset: human_subset +subset: mouse_subset xref: FMA:49458 xref: Wikipedia:Sylvian_point is_a: UBERON:0006983 ! anatomical point @@ -326472,6 +340929,8 @@ relationship: superficial_to UBERON:0002721 ! lateral sulcus id: UBERON:0013463 name: temporal fossa def: "The temporal fossa is a shallow depression on the side of the skull bounded by the temporal lines and terminating below the level of the zygomatic arch." [Wikipedia:Temporal_fossa] +subset: human_subset +subset: mouse_subset xref: FMA:75307 xref: NCIT:C33742 xref: SCTID:137157009 @@ -326492,6 +340951,8 @@ is_obsolete: true id: UBERON:0013468 name: zygomatic fossa def: "The Zygomatic Fossa is an irregularly shaped cavity, situated below and on the inner side of the zygoma; bounded, in front, by the zygomatic surface of the superior maxillary bone and the ridge which descends from its malar process; behind, by the posterior border of the external pterygoid plate and the eminentia articularis; above, by the pterygoid ridge on the outer surface of the great wing of the sphenoid and the under part of the squamous portion of the temporal; below by the alveolar border of the superior maxilla; internally, by the external pterygoid plate; and externally, by the zygomatic arch ramus of the lower jaw. It contains the lower part of the temporal, the External and Internal pterygoid muscles, the internal maxillary artery and vein, and inferior maxillary nerve and their branches. At its upper and inner part may be observed two fissures, the spheno-maxillary and pterygo-maxillary." [Wikipedia:Zygomatic_fossa] +subset: human_subset +subset: mouse_subset xref: NCIT:C33898 xref: Wikipedia:Zygomatic_fossa is_a: UBERON:0008789 ! cranial fossa @@ -326501,6 +340962,8 @@ relationship: part_of UBERON:0002500 ! zygomatic arch id: UBERON:0013469 name: external occipital protuberance def: "Near the middle of the occipital squama is the external occipital protuberance, and extending lateralward from it on either side is the superior nuchal line, and above this the faintly marked highest nuchal line. It is less pronounced in females. The inion is the highest point of the external occipital protuberance. a projection on the external surface of the squamous part of the occipital bone in the midline." [Wikipedia:External_occipital_protuberance] +subset: human_subset +subset: mouse_subset synonym: "inion" RELATED [Wikipedia:Inion] xref: FMA:75752 xref: SCTID:139582005 @@ -326514,6 +340977,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/166" xsd: id: UBERON:0013471 name: retromolar space def: "The retromolar space or retromolar gap is a space at the rear of a mandible, between the back of the last molar and the anterior edge of the ascending ramus where it crosses the alveolar margin.[WP]." [Wikipedia:Retromolar_space] +subset: human_subset +subset: mouse_subset synonym: "retromolar gap" EXACT [Wikipedia:Retromolar_space] xref: Wikipedia:Retromolar_space is_a: UBERON:0000464 ! anatomical space @@ -326525,6 +340990,8 @@ property_value: taxon_notes "Retromolar gap is found in some Neandertals because id: UBERON:0013472 name: upper esophagus def: "The upper one third of esophagus in which the muscle layer is composed of muscle cells of the striated type." [ncithesaurus:Upper_Third_of_the_Esophagus] +subset: human_subset +subset: mouse_subset synonym: "proximal part of esophagus" RELATED [] synonym: "upper third of esophagus" RELATED [] xref: NCIT:C12253 @@ -326537,6 +341004,8 @@ relationship: part_of UBERON:0001043 ! esophagus id: UBERON:0013473 name: lower esophagus def: "The lower one third of the esophagus in which the muscle layer is composed of muscle cells predominantly of the smooth type." [ncithesaurus:Lower_Third_of_the_Esophagus] +subset: human_subset +subset: mouse_subset synonym: "distal part of esophagus" RELATED [] synonym: "esophagus distal third" EXACT [PMID:16900308] synonym: "lower third of esophagus" RELATED [] @@ -326550,6 +341019,8 @@ relationship: part_of UBERON:0001043 ! esophagus id: UBERON:0013474 name: middle part of esophagus def: "The middle one third of the esophagus in which the muscle layer is composed of muscle cells of the striated and smooth types." [ncithesaurus:Middle_Third_of_the_Esophagus] +subset: human_subset +subset: mouse_subset synonym: "middle third of esophagus" RELATED [] xref: NCIT:C12254 xref: SCTID:276802008 @@ -326561,6 +341032,8 @@ relationship: part_of UBERON:0001043 ! esophagus id: UBERON:0013475 name: gustatory gland def: "A serous salivary gland which resides adjacent to the moats surrounding the circumvallate papillae in the posterior one-third of the tongue, anterior to the terminal sulcus." [Wikipedia:Von_Ebner's_gland] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "posterior deep lingual gland" EXACT [PMCID:PMC2667924] synonym: "posterior lingual serous gland" EXACT [MGI:anna] @@ -326583,6 +341056,8 @@ property_value: structure_notes "a group of tubulo-acinar serous glands located id: UBERON:0013476 name: dermal layer of tongue def: "Missing definition for term UBERON:0013476. Please replace it using linked reference." [PMID:23153189] +subset: human_subset +subset: mouse_subset synonym: "tongue (dermal layer)" EXACT [] is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0001723 ! tongue @@ -326616,6 +341091,8 @@ property_value: taxon_notes "In avians the polycryptic cecal tissue is similar t id: UBERON:0013479 name: lung endothelium def: "A blood vessel endothelium that is part of a lung [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "respiratory endothelium" RELATED [BTO:0004128] xref: BTO:0004128 xref: CALOHA:TS-0573 @@ -326630,6 +341107,8 @@ relationship: part_of UBERON:0002048 ! lung id: UBERON:0013481 name: crypt of Lieberkuhn of ileum def: "An intestinal crypt that is located in the ileum." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ileal crypt" EXACT [] synonym: "ileal crypt of Lieberkuhn" EXACT [] @@ -326646,6 +341125,8 @@ relationship: part_of UBERON:0008344 {source="FMA"} ! intestinal villus of ileum id: UBERON:0013482 name: crypt of Lieberkuhn of duodenum def: "An intestinal crypt that is located in the duodenum." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "duodenal crypt" EXACT [] synonym: "duodenal crypt of Lieberkuhn" EXACT [] @@ -326661,6 +341142,8 @@ relationship: part_of UBERON:0008342 {source="FMA"} ! intestinal villus of duode id: UBERON:0013483 name: crypt of Lieberkuhn of jejunum def: "An intestinal crypt that is located in the jejunum." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "jejunal crypt" EXACT [] synonym: "jejunal crypt of Lieberkuhn" EXACT [] @@ -326677,6 +341160,8 @@ id: UBERON:0013485 name: crypt of Lieberkuhn of colon def: "An intestinal crypt that is located in the colon. The colonic crypts of Lieberkühn are straight and unbranched and lined largely with goblet cells." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "colonic crypt" EXACT [] synonym: "colonic crypt of Lieberkuhn" EXACT [] xref: SCTID:19447003 @@ -326691,6 +341176,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0013486 name: crypt of Lieberkuhn of appendix def: "An intestinal crypt that is located in the appendix." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "appendiceal crypt" EXACT [] synonym: "appendiceal crypt of Lieberkuhn" EXACT [] xref: SCTID:21512007 @@ -326704,6 +341191,8 @@ relationship: part_of UBERON:0004989 ! mucosa of appendix id: UBERON:0013487 name: epidermal ridge of digit def: "The grooves in the outermost layer of skin on the palms of the hands and soles of the feet where sweat glands open." [ncithesaurus:Epidermal_Ridges] +subset: human_subset +subset: mouse_subset synonym: "dermatoglyph" RELATED [https://ghr.nlm.nih.gov/handbook/traits/fingerprints] synonym: "epidermal ridge" RELATED [] synonym: "fingerprint" RELATED [] @@ -326721,6 +341210,8 @@ relationship: present_in_taxon NCBITaxon:9443 ! Primates id: UBERON:0013488 name: panniculus adiposus def: "The panniculus adiposus is the fatty layer of the subcutaneous tissues, superficial to a deeper vestigial layer of muscle, the panniculus carnosus. An example is the Fascia of Camper. Another example is the superficial cervical fascia[WP]." [Wikipedia:Panniculus_adiposus] +subset: human_subset +subset: mouse_subset synonym: "panniculus adiposus group" EXACT [] synonym: "subcutaneous fat" RELATED [Wikipedia:Panniculus_adiposus] xref: Wikipedia:Panniculus_adiposus @@ -326734,6 +341225,8 @@ id: UBERON:0013489 name: superficial cervical fascia def: "Superficial cervical fascia is a thin layer of subcutaneous connective tissue that lies between the dermis of the skin and the deep cervical fascia. It contains the platysma, cutaneous nerves, blood, and lymphatic vessels. It also contains a varying amount of fat, which is its distinguishing characteristic." [Wikipedia:Superficial_cervical_fascia] comment: It is considered by some to be a part of the Panniculus adiposus, and not true fascia[WP] +subset: human_subset +subset: mouse_subset synonym: "lamina superficialis fasciae cervicalis" EXACT OMO:0003011 [FMA:57805, FMA:TA] synonym: "superficial cervical fascia" EXACT [FMA:57805] synonym: "superficial layer of cervical fascia" EXACT [FMA:57805] @@ -326751,6 +341244,8 @@ relationship: part_of UBERON:0013488 {notes="contested", source="Wikipedia"} ! p id: UBERON:0013490 name: deep cervical fascia def: "The deep cervical fascia (or fascia colli in older texts) lies under cover of the Platysma, and invests the neck; it also forms sheaths for the carotid vessels, and for the structures situated in front of the vertebral column. Its attachment to the hyoid bone prevents the formation of a dewlap. The investing portion of the fascia is attached behind to the ligamentum nucha and to the spinous process of the seventh cervical vertebra. The 'alar fascia' is a portion of deep cervical fascia." [Wikipedia:Deep_cervical_fascia] +subset: human_subset +subset: mouse_subset synonym: "deep cervical fascia" EXACT [FMA:21791] synonym: "deep fascia of neck" EXACT [FMA:21791] synonym: "fascia coli" RELATED [Wikipedia:Deep_cervical_fascia] @@ -326766,6 +341261,8 @@ relationship: immediately_deep_to UBERON:0005467 ! platysma id: UBERON:0013491 name: cervical fascia def: "Any fascia tissue that is part of the neck region." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Cervical_fascia] +subset: human_subset +subset: mouse_subset synonym: "fascia of neck" EXACT [] xref: FMA:76866 xref: SCTID:361906006 @@ -326780,6 +341277,8 @@ relationship: part_of UBERON:0000974 ! neck id: UBERON:0013492 name: prevertebral cervical fascia def: "The prevertebral fascia (or prevertebral layer of cervical fascia) is a fascia in the neck." [Wikipedia:Prevertebral_fascia] +subset: human_subset +subset: mouse_subset synonym: "lamina prevertebralis (fascia cervicalis)" EXACT [FMA:46560] synonym: "lamina prevertebralis fasciae cervicalis" EXACT OMO:0003011 [FMA:46560, FMA:TA] synonym: "prevertebral fascia" EXACT [FMA:46560] @@ -326796,6 +341295,8 @@ is_a: UBERON:0013491 ! cervical fascia id: UBERON:0013493 name: abdominal fascia def: "A fascia that is part of a abdomen." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "endo-abdominopelvic fascia" EXACT [FMA:19841] synonym: "fascia of abdomen" EXACT [FMA:19841] xref: FMA:19841 @@ -326811,6 +341312,7 @@ relationship: part_of UBERON:0000916 ! abdomen id: UBERON:0013494 name: keratin-coated spine def: "A modified strand of hair covered in a keratin coat, as found in porcupines and hedgehogs." [https://orcid.org/0000-0002-6601-2165] +subset: mouse_subset is_a: UBERON:0001037 ! strand of hair is_a: UBERON:0008260 ! spine appendage intersection_of: UBERON:0008260 ! spine appendage @@ -326821,6 +341323,7 @@ relationship: composed_primarily_of GO:0045095 ! keratin filament id: UBERON:0013495 name: barbed keratin-coated spine def: "A keratin-coated spine that is tipped with a barb." [https://orcid.org/0000-0002-6601-2165] +subset: mouse_subset synonym: "porcupine quill" RELATED [] synonym: "quill" EXACT [] is_a: UBERON:0013494 ! keratin-coated spine @@ -326832,6 +341335,7 @@ property_value: taxon_notes "Porcupines' quills, or spines, take on various form id: UBERON:0013496 name: unbarbed keratin-coated spine def: "A keratin-coated spine that is lacks a barbed end." [https://orcid.org/0000-0002-6601-2165] +subset: mouse_subset synonym: "hedgehog spine" EXACT [] synonym: "spine" BROAD [] is_a: UBERON:0013494 ! keratin-coated spine @@ -326841,6 +341345,8 @@ relationship: present_in_taxon NCBITaxon:9363 ! Erinaceidae id: UBERON:0013497 name: muscularis orbicularis def: "A fringe of muscle running along the periphery of the panniculus." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "orbicularis" RELATED [] synonym: "orbicularis muscle" EXACT [] is_a: UBERON:0002036 ! striated muscle tissue @@ -326852,6 +341358,8 @@ property_value: function_notes "Hedgehogs roll into a ball via contraction of th [Term] id: UBERON:0013498 name: vestibulo-cochlear VIII ganglion complex +subset: human_subset +subset: mouse_subset synonym: "vestibular VIII ganglion complex" RELATED [EHDAA2:0004313] synonym: "vestibulocochlear ganglion complex" EXACT [] synonym: "vestibulocochlear VIII ganglion complex" EXACT [] @@ -326866,14 +341374,19 @@ property_value: editor_note "requires verification" xsd:string [Term] id: UBERON:0013499 name: glossopharyngeal-vagus IX-X preganglion complex +subset: human_subset +subset: mouse_subset synonym: "glossopharyngeal-vagus preganglion complex" RELATED [EMAPA:16662] xref: EMAPA:16662 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001714 {source="cjm"} ! cranial ganglion +relationship: part_of UBERON:8450003 ! embryonic craniocervical region [Term] id: UBERON:0013500 name: glossopharyngeal-vagus IX-X ganglion complex +subset: human_subset +subset: mouse_subset synonym: "glossopharyngeal-vagus ganglion complex" RELATED [EMAPA:16796] xref: EMAPA:16796 is_a: UBERON:0001714 {source="cjm"} ! cranial ganglion @@ -326884,6 +341397,8 @@ id: UBERON:0013501 name: cloacal sphincter def: "A sphincter muscle that is part of a cloaca." [OBOL:automatic] comment: the muscles of the cloacal sphincter specialise into the perineal muscles in mammals (Gegenbaur, 1883; Popowsky, 1899; Nishi, 1938). +subset: human_subset +subset: mouse_subset synonym: "sphincter cloacae" EXACT OMO:0003004 [] xref: NCIT:C34129 xref: UMLS:C1516658 {source="ncithesaurus:Cloacal_Sphincter"} @@ -326897,6 +341412,8 @@ relationship: part_of UBERON:0000162 ! cloaca id: UBERON:0013502 name: 5th arch mesenchyme def: "A mesenchyme that is part of a pharyngeal arch 5." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "5th branchial arch mesenchyme" RELATED [] synonym: "5th pharyngeal arch mesenchyme" EXACT [VHOG:0001052] synonym: "pharyngeal arch 5 mesenchyme" RELATED [] @@ -326910,6 +341427,8 @@ id: UBERON:0013503 name: caudal vertebra cartilage element alt_id: UBERON:0013517 def: "A caudal vertebra endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "coccygeal vertebra cartilage element" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "coccygeal vertebral cartilage condensation group" EXACT [EHDAA2:0000260] synonym: "tail vertebral cartilage condensation" EXACT [EMAPA:18044] @@ -326930,6 +341449,8 @@ id: UBERON:0013504 name: caudal vertebra pre-cartilage condensation alt_id: UBERON:0013518 def: "A caudal vertebra endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "coccygeal vertebra pre-cartilage condensation" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "tail vertebral pre-cartilage condensation" EXACT [EMAPA:18045] xref: EMAPA:18045 @@ -326944,6 +341465,8 @@ relationship: part_of UBERON:0006076 ! caudal region of vertebral column id: UBERON:0013505 name: cervical vertebra cartilage element def: "A cervical vertebra endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cervical vertebral cartilage condensation group" EXACT [EHDAA2:0000240] xref: EHDAA2:0000240 is_a: UBERON:0003601 ! neck cartilage @@ -326960,6 +341483,8 @@ relationship: has_potential_to_develop_into UBERON:0002413 ! cervical vertebra id: UBERON:0013506 name: cervical vertebra pre-cartilage condensation def: "A cervical vertebra endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011095 ! vertebra pre-cartilage condensation is_a: UBERON:0015007 ! cervical vertebra endochondral element intersection_of: UBERON:0015007 ! cervical vertebra endochondral element @@ -326970,6 +341495,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0013507 name: thoracic vertebra cartilage element def: "A thoracic vertebra endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "thoracic vertebral cartilage condensation group" EXACT [EHDAA2:0002014] xref: EHDAA2:0002014 is_a: UBERON:0011094 ! vertebra cartilage element @@ -326986,6 +341513,8 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk id: UBERON:0013508 name: thoracic vertebra pre-cartilage condensation def: "A thoracic vertebra endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011095 ! vertebra pre-cartilage condensation is_a: UBERON:0015008 ! thoracic vertebra endochondral element intersection_of: UBERON:0015008 ! thoracic vertebra endochondral element @@ -326997,6 +341526,8 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk id: UBERON:0013509 name: lumbar vertebra cartilage element def: "A lumbar vertebra endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lumbar vertebral cartilage condensation group" EXACT [EHDAA2:0001038] xref: EHDAA2:0001038 is_a: UBERON:0011094 ! vertebra cartilage element @@ -327012,6 +341543,8 @@ relationship: has_potential_to_develop_into UBERON:0002414 ! lumbar vertebra id: UBERON:0013510 name: lumbar vertebra pre-cartilage condensation def: "A lumbar vertebra endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011095 ! vertebra pre-cartilage condensation is_a: UBERON:0015009 ! lumbar vertebra endochondral element intersection_of: UBERON:0015009 ! lumbar vertebra endochondral element @@ -327058,6 +341591,8 @@ relationship: surrounds UBERON:0000162 ! cloaca id: UBERON:0013514 name: space surrounding organism def: "The space that surrounds an organism." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "external to organism" EXACT [] synonym: "outside of body" EXACT [] is_a: UBERON:0000464 ! anatomical space @@ -327069,6 +341604,8 @@ relationship: surrounds UBERON:0000468 ! multicellular organism id: UBERON:0013515 name: subdivision of oviduct def: "A section through the tube or network of tubes that connects the ovaries to the outside of the body." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "subdivision of fallopian tube" NARROW [FMA:18302] synonym: "subdivision of oviduct" EXACT [FMA:18302] @@ -327107,6 +341644,8 @@ relationship: in_taxon NCBITaxon:8782 ! Aves [Term] id: UBERON:0013522 name: subdivision of tube +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: has_part UBERON:0000060 ! anatomical wall relationship: has_part UBERON:0000464 ! anatomical space @@ -327156,6 +341695,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0013525 name: stomach lumen def: "The anatomical space that is enclosed by a stomach." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "cavity of stomach" EXACT [FMA:14585] synonym: "gastric cavity" RELATED [FMA:14585] xref: EMAPA:18395 @@ -327172,6 +341713,8 @@ property_value: external_definition "Organ cavity which is bound by the internal id: UBERON:0013526 name: otocyst lumen def: "An anatomical cavity that is part of a ear vesicle." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lumen of otocyst" EXACT [EMAPA:25363] xref: EHDAA2:0004121 xref: EMAPA:25363 @@ -327187,6 +341730,8 @@ relationship: part_of UBERON:0003051 {source="EHDAA2"} ! ear vesicle id: UBERON:0013527 name: pectoral flipper tubercle def: "A bump or swelling adorining the head and leading edge of a pectoral flipper, associated with the multiple joints and terminal phalanges as found in the multiple phalanges of the humpback whale." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005813 ! tubercle relationship: part_of UBERON:0002102 ! forelimb property_value: taxon_notes "In a humpback the number of tubercles ranges from 9 to 11, with the first at the joint between the radius and metacarpal of digit II (with digit I absent)" xsd:string @@ -327195,6 +341740,8 @@ property_value: taxon_notes "In a humpback the number of tubercles ranges from 9 id: UBERON:0013528 name: Brodmann (1909) area 11 def: "Brodmann area 11 is one of Brodmann's cytologically defined regions of the brain. It is involved in planning, reasoning, and decision making." [Wikipedia:Brodmann_area_11] +subset: human_subset +subset: mouse_subset synonym: "area 11 of Brodmann" EXACT [FMA:68608] synonym: "area 11 of Brodmann" RELATED [Wikipedia:Brodmann_area_11] synonym: "area 11 of Brodmann (guenon)" RELATED [NeuroNames:1036] @@ -327220,6 +341767,8 @@ is_a: UBERON:0013529 {source="FMA"} ! Brodmann area id: UBERON:0013529 name: Brodmann area def: "A segmentation of the cerebral cortex on the basis of cytoarchitecture as described in Brodmann-1905, Brodmann-1909 and Brodmann-10. Maps for several species were presented. NeuroNames includes only areas in the human and in Old World monkeys. Of the latter, Brodmann studied representatives of several species including guenons (one Cercopithecus mona, one Cercocebus torquatus, and one Cercopithecus otherwise unspecified), which are all closely related African species, and one macaque (Macaca mulatta) an Asian species (Brodmann-1905). The legend to the summary map in Brodmann-1909 ascribes the areas simply to Cercopithecus. Brodmann referenced the areas by name and number. The same area number in humans and monkeys did not necessarily refer to topologically or cytoarchitecturally homologous structures. In NeuroNames the standard term for human areas consists of the English translation of Brodmann's Latin name followed by the number he assigned, e.g., agranular frontal area 6; the standard terms for monkey areas are in the format: area 6 of Brodmann-1909. He mapped a portion of areas limited to the banks of sulci, e.g., area 3 of Brodmann-1909 (Brodmann-1909) onto the adjacent, visible surface. This accounts for the fact that some areas appear larger on his surface map than on maps of other authors, e.g., area 3 of Vogts-1919. (Adapted from NeuroNames)." [BIRNLEX:1731] +subset: human_subset +subset: mouse_subset synonym: "Brodmann parcellation scheme region" RELATED [BIRNLEX:1731] synonym: "Brodmann partition scheme region" RELATED [BIRNLEX:1731] synonym: "Brodmann's areas" RELATED OMO:0003004 [BIRNLEX:1731] @@ -327238,6 +341787,8 @@ relationship: part_of UBERON:0000956 {source="FMA", source="Wikipedia"} ! cerebr id: UBERON:0013531 name: retrosplenial region def: "The retrosplenial region is a brain area and part of the cingulate cortex. It is defined by Brodmann area 26, Brodmann area 29 and the Brodmann area 30." [Wikipedia:Retrosplenial_region] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "retrosplenial area" RELATED [BAMS:RSP] synonym: "retrosplenial cortex" RELATED [BTO:0003977, Wikipedia:Retrosplenial_region] @@ -327255,6 +341806,8 @@ relationship: part_of UBERON:0003027 {source="BTO"} ! cingulate cortex [Term] id: UBERON:0013533 name: Brodmann (1909) area 2 +subset: human_subset +subset: mouse_subset synonym: "area 2 of Brodmann" EXACT [FMA:68598] synonym: "area 2 of Brodmann (guenon)" RELATED [NeuroNames:1033] synonym: "area 2 of Brodmann-1909" EXACT [BIRNLEX:1733] @@ -327279,6 +341832,8 @@ is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area id: UBERON:0013535 name: Brodmann (1909) area 4 def: "The term area 4 of Brodmann-1909 refers to a cytoarchitecturally defined portion of the frontal lobe of the guenon. It is located predominantly in the precentral gyrus. Brodmann-1909 regarded it as topographically and cytoarchitecturally homologous to the human gigantopyramidal area 4 and noted that it occupies a much greater fraction of the frontal lobe in the monkey than in the human. Distinctive features (Brodmann-1905): the cortex is unusually thick; the layers are not distinct; the cells are relatively sparsely distributed; giant pyramidal (Betz) cells are present in the internal pyramidal layer (V); lack of an internal granular layer (IV) such that the boundary between the external pyramidal layer (III) and the internal pyramidal layer (V) is indistinct; lack of a distinct external granular layer (II); a gradual transition from the multiform layer (VI) to the subcortical white matter." [BIRNLEX:1735] +subset: human_subset +subset: mouse_subset synonym: "area 4 of Brodmann" EXACT [FMA:68600] synonym: "area 4 of Brodmann (guenon)" RELATED [NeuroNames:1014] synonym: "area 4 of Brodmann-1909" EXACT [BIRNLEX:1735] @@ -327304,6 +341859,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/515" xsd: id: UBERON:0013538 name: Brodmann (1909) area 7 def: "Brodmann area 7 is one of Brodmann's cytologically defined regions of the brain. It is involved in locating objects in space. It serves as a point of convergence between vision and proprioception to determine where objects are in relation to parts of the body." [Wikipedia:Brodmann_area_7] +subset: human_subset +subset: mouse_subset synonym: "area 7 of Brodmann" EXACT [FMA:68604] synonym: "area 7 of Brodmann-1909" EXACT [BIRNLEX:1738] synonym: "area parietalis superior" EXACT OMO:0003011 [BIRNLEX:1738, Wikipedia:Brodmann_area_7] @@ -327327,6 +341884,8 @@ is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area id: UBERON:0013539 name: Brodmann (1909) area 8 def: "Brodmann area 8 is one of Brodmann's cytologically defined regions of the brain. It is involved in planning complex movements." [Wikipedia:Brodmann_area_8] +subset: human_subset +subset: mouse_subset synonym: "area 8 of Brodmann" EXACT [FMA:68605] synonym: "area 8 of Brodmann (guenon)" RELATED [NeuroNames:1034] synonym: "area 8 of Brodmann-1909" EXACT [BIRNLEX:1739] @@ -327349,6 +341908,8 @@ is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013540 name: Brodmann (1909) area 9 +subset: human_subset +subset: mouse_subset synonym: "area 9 of Brodmann" EXACT [FMA:68606] synonym: "area 9 of Brodmann (guenon)" RELATED [NeuroNames:1024] synonym: "area 9 of Brodmann-1909" EXACT [BIRNLEX:1740] @@ -327373,6 +341934,8 @@ relationship: part_of UBERON:0009834 {source="https://orcid.org/0000-0003-3308-6 id: UBERON:0013541 name: Brodmann (1909) area 10 def: "Brodmann area 10, or BA10, is part of the frontal cortex in the human brain. BA10 encompasses the most anterior part of the frontal cortex, known as the frontopolar region. This area is believed to play a part in strategic processes involved in memory retrieval and executive function. This area is also called frontopolar area 10, and it refers to a subdivision of the cytoarchitecturally defined frontal region of cerebral cortex. It occupies the most rostral portions of the superior frontal gyrus and the middle frontal gyrus. In humans, on the medial aspect of the hemisphere it is bounded ventrally by the superior rostral sulcus (H). It does not extend as far as the cingulate sulcus. Cytoarchitecturally it is bounded dorsally by the granular frontal area 9, caudally by the middle frontal area 46, and ventrally by the orbital area 47 and by the rostral area 12 or, in an early version of Brodmann's cortical map (Brodmann-1909), the prefrontal Brodmann area 11-1909." [Wikipedia:Brodmann_area_10] +subset: human_subset +subset: mouse_subset synonym: "area 10 of Brodmann" EXACT [FMA:68607] synonym: "area 10 of Brodmann-1909" EXACT [BIRNLEX:1741] synonym: "area frontopolaris" EXACT [BIRNLEX:1741] @@ -327401,6 +341964,8 @@ id: UBERON:0013543 name: Brodmann (1909) area 12 alt_id: UBERON:0013530 def: "Brodmann area 12 is a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. It occupies the most rostral portion of the frontal lobe. Brodmann-1909 did not regard it as homologous, either topographically or cytoarchitecturally, to rostral area 12 of the human. Distinctive features (Brodmann-1905): a quite distinct internal granular layer (IV) separates slender pyramidal cells of the external pyramidal layer (III) and the internal pyramidal layer (V); the multiform layer (VI) is expanded, contains widely dispersed spindle cells and merges gradually with the underlying cortical white matter; all cells, including the pyramidal cells of the external and internal pyramidal layers are inordinately small; the internal pyramidal layer (V) also contains spindle cells in groups of two to five located close to its border with the internal granular layer (IV)." [Wikipedia:Brodmann_area_12] +subset: human_subset +subset: mouse_subset synonym: "area 12 of Brodmann" EXACT [FMA:68609] synonym: "area 12 of Brodmann-1909" EXACT [BIRNLEX:1743] synonym: "area praefrontalis" BROAD [BIRNLEX:1743] @@ -327424,6 +341989,8 @@ is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area id: UBERON:0013544 name: Brodmann (1909) area 13 def: "Brodmann area 13 is a subdivision of the cerebral cortex as defined on the guenon monkey and on the basis of cytoarchitecture. Brodmann area 13 is found in humans, however it seems to act as a bridge between the lateral and medial layers of the brain. Thus it is sometimes misidentified as not being a Brodmann area." [Wikipedia:Brodmann_area_13] +subset: human_subset +subset: mouse_subset synonym: "area 13 of Brodmann" RELATED [FMA:68610] synonym: "area 13 of Brodmann-1909" EXACT [BIRNLEX:1744] synonym: "B09-13" BROAD OMO:0003000 [BIRNLEX:1744, NIFSTD:SumsDB_abbrevSource] @@ -327442,6 +342009,8 @@ is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area id: UBERON:0013545 name: Brodmann (1909) area 14 def: "Brodmann Area 14 is one of Brodmann's subdivisions of the cerebral cortex in the brain. It was defined by Brodmann in the guenon monkey. No equivalent structure exists in humans." [Wikipedia:Brodmann_area_14] +subset: human_subset +subset: mouse_subset synonym: "area 14 of Brodmann" RELATED [FMA:68611] synonym: "area 14 of Brodmann-1909" EXACT [BIRNLEX:1745] synonym: "B09-14" BROAD OMO:0003000 [BIRNLEX:1745, NIFSTD:SumsDB_abbrevSource] @@ -327461,6 +342030,8 @@ relationship: part_of UBERON:0000451 {notes="vmPFC", source="WP"} ! prefrontal c id: UBERON:0013546 name: Brodmann (1909) area 15 def: "Brodmann Area 15 is one of Brodmann's subdivisions of the cerebral cortex in the brain. Area 15 was defined by Brodmann in the guenon monkey, but he found no equivalent structure in humans. However, functional imaging experiments have found structures that may be homologous." [Wikipedia:Brodmann_area_15] +subset: human_subset +subset: mouse_subset synonym: "area 15 of Brodmann" RELATED [NeuroNames:1010] synonym: "area 15 of Brodmann (guenon)" RELATED [NeuroNames:1010] synonym: "area 15 of Brodmann-1909" EXACT [BIRNLEX:1746] @@ -327481,6 +342052,8 @@ is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area id: UBERON:0013547 name: Brodmann (1909) area 16 def: "Brodmann area 16 is a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. It is a relatively undifferentiated cortical area that Brodmann regarded as part of the insula because of the relation of its innermost multiform layer (VI) with the claustrum (VICl). The laminar organization of cortex is almost totally lacking. The molecular layer (I) is wide as in area 15 of Brodmann-1905. The space between layer I and layer VI is composed of a mixture of pyramidal cells and spindle cells with no significant number of granule cells. Pyramidal cells clump in the outer part to form glomeruli similar to those seen in some of the primary olfactory areas (Brodmann-1905). This term also refers to an area known as peripaleocortical claustral - a cytoarchitecturally defined (agranular) portion of the insula at its rostral extreme where it approaches most closely the claustrum and the prepyriform area (Stephan-76)." [Wikipedia:Brodmann_area_16] +subset: human_subset +subset: mouse_subset synonym: "area 16 of Brodmann" EXACT [FMA:68613] synonym: "area 16 of Brodmann (guenon)" RELATED [NeuroNames:1011] synonym: "area 16 of Brodmann-1909" EXACT [BIRNLEX:1747] @@ -327501,6 +342074,8 @@ is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area id: UBERON:0013550 name: Brodmann (1909) area 19 def: "Brodmann area 19, or BA19, is part of the occipital lobe cortex in the human brain. Along with area 18, it comprises the extrastriate (or peristriate) cortex. In normally-sighted humans, extrastriate cortex is a visual association area, with feature-extracting, shape recognition, attentional, and multimodal integrating functions. This area is also known as peristriate area 19, and it refers to a subdivision of the cytoarchitecturally defined occipital region of cerebral cortex. In the human it is located in parts of the lingual gyrus, the cuneus, the lateral occipital gyrus (H) and the superior occipital gyrus (H) of the occipital lobe where it is bounded approximately by the parieto-occipital sulcus. Cytoarchitecturally it is bounded on one side by the parastriate area 18 which it surrounds. Rostrally it is bounded by the angular area 39 (H) and the occipitotemporal area 37 (H) (Brodmann-1909)." [Wikipedia:Brodmann_area_19] +subset: human_subset +subset: mouse_subset synonym: "area 19 of Brodmann" EXACT [FMA:68616] synonym: "area 19 of Brodmann (guenon)" RELATED [NeuroNames:1028] synonym: "area 19 of Brodmann-1909" EXACT [BIRNLEX:1750] @@ -327526,6 +342101,8 @@ relationship: part_of UBERON:0014370 {source="WP"} ! extrastriate cortex id: UBERON:0013551 name: Brodmann (1909) area 20 def: "Brodmann area 20, or BA20, is part of the temporal cortex in the human brain. The region encompasses most of the ventral temporal cortex, a region believed to play a part in high-level visual processing and recognition memory. This area is also known as inferior temporal area 20, and it refers to a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. In the human it corresponds approximately to the inferior temporal gyrus. Cytoarchitecturally it is bounded medially by the ectorhinal area 36 (H), laterally by the middle temporal area 21, rostrally by the temporopolar area 38 (H) and caudally by the occipitotemporal area 37 (H) (Brodmann-1909)." [Wikipedia:Brodmann_area_20] +subset: human_subset +subset: mouse_subset synonym: "area 20 of Brodmann" EXACT [FMA:68617] synonym: "area 20 of Brodmann (guenon)" RELATED [NeuroNames:1025] synonym: "area 20 of Brodmann-1909" EXACT [BIRNLEX:1751] @@ -327549,6 +342126,8 @@ is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area id: UBERON:0013552 name: Brodmann (1909) area 21 def: "Brodmann area 21, or BA21, is part of the temporal cortex in the human brain. The region encompasses most of the lateral temporal cortex, a region believed to play a part in auditory processing and language. Language function is left lateralized in most individuals. BA21 is superior to BA20 and inferior to BA40 and BA41. This area is also known as middle temporal area 21. It is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. In the human it corresponds approximately to the middle temporal gyrus. It is bounded rostrally by the temporopolar area 38 (H), ventrally by the inferior temporal area 20, caudally by the occipitotemporal area 37 (H), and dorsally by the superior temporal area 22 (Brodmann-1909). [WP,unvetted]." [Wikipedia:Brodmann_area_21] +subset: human_subset +subset: mouse_subset synonym: "area 21 of Brodmann" EXACT [FMA:68618] synonym: "area 21 of Brodmann (guenon)" RELATED [NeuroNames:1016] synonym: "area 21 of Brodmann-1909" EXACT [BIRNLEX:1752] @@ -327572,6 +342151,8 @@ relationship: part_of UBERON:0016538 ! temporal cortex id: UBERON:0013553 name: Brodmann (1909) area 22 def: "Brodmann area 22 is one of Brodmann's cytologically defined regions of the brain. It is involved in auditory processing." [Wikipedia:Brodmann_area_22] +subset: human_subset +subset: mouse_subset synonym: "area 22 of Brodmann" EXACT [FMA:68619] synonym: "area 22 of Brodmann (guenon)" RELATED [NeuroNames:1017] synonym: "area 22 of Brodmann-1909" EXACT [BIRNLEX:1753] @@ -327595,6 +342176,8 @@ is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area id: UBERON:0013554 name: Brodmann (1909) area 23 def: "The term area 23 of Brodmann-1909 refers to a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. Brodmann regarded it as topographically and cytoarchitecturally homologous to the combined ventral posterior cingulate area 23 and dorsal posterior cingulate area 31 of the human (Brodmann-1909). Distinctive Features (Brodmann-1905): the cortex is relatively thin; smaller cells predominate; the cell density of the multiform layer (VI) is great, producing a distinct boundary with the subcortical white matter; the internal granular layer (IV) is rather well developed; the internal pyramidal layer (V) contains a dense population of round, medium-sized ganglion cells concentrated at the border with layer IV; layers V and VI are narrow with a distinct mutual boundary.nn* Definition Source NeuroNames." [BIRNLEX:1754] +subset: human_subset +subset: mouse_subset synonym: "area 23 of Brodmann" EXACT [FMA:68620] synonym: "area 23 of Brodmann (guenon)" RELATED [NeuroNames:1018] synonym: "area 23 of Brodmann-1909" EXACT [BIRNLEX:1754] @@ -327621,6 +342204,8 @@ is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area id: UBERON:0013556 name: Brodmann (1909) area 25 def: "Brodmann area 25 (BA25) is an area in the cerebral cortex of the brain and delineated based on its cytoarchitectonic characteristics. It is also called the subgenual area or area subgenualis. It is the 25th 'Brodmann area' defined by Korbinian Brodmann (thus its name). BA25 is located in the cingulate region as a narrow band in the caudal portion of the subcallosal area adjacent to the paraterminal gyrus. The posterior parolfactory sulcus separates the paraterminal gyrus from BA25. Rostrally it is bound by the prefrontal area 11 of Brodmann." [Wikipedia:Brodmann_area_25] +subset: human_subset +subset: mouse_subset synonym: "area 25 of Brodmann" EXACT [FMA:68622] synonym: "area 25 of Brodmann (guenon)" RELATED [NeuroNames:1029] synonym: "area 25 of Brodmann-1909" EXACT [BIRNLEX:1756] @@ -327643,6 +342228,8 @@ is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area id: UBERON:0013558 name: Brodmann (1909) area 27 def: "Area 27 of Brodmann-1909 is a cytoarchitecturally defined cortical area that is a rostral part of the parahippocampal gyrus of the guenon (Brodmann-1909). It is commonly regarded as a synonym of presubiculum (Crosby-62). [WP,unvetted]." [Wikipedia:Brodmann_area_27] +subset: human_subset +subset: mouse_subset synonym: "area 27" EXACT [FMA:68624] synonym: "area 27 of Brodmann" EXACT [] synonym: "area 27 of Brodmann (guenon)" RELATED [NeuroNames:1039] @@ -327667,6 +342254,8 @@ relationship: part_of UBERON:0001953 {notes="consider merging many sources treat [Term] id: UBERON:0013559 name: Brodmann (1909) area 28 +subset: human_subset +subset: mouse_subset synonym: "area 28 of Brodmann" EXACT [] synonym: "area 28 of Brodmann (Crosby)" EXACT [] synonym: "area 28 of Brodmann (guenon)" RELATED [NeuroNames:1030] @@ -327692,6 +342281,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/76/Br id: UBERON:0013560 name: Brodmann (1909) area 32 def: "The Brodmann area 32, also known in the human brain as the dorsal anterior cingulate area 32, refers to a subdivision of the cytoarchitecturally defined cingulate region of cerebral cortex. In the human it forms an outer arc around the anterior cingulate gyrus. The cingulate sulcus defines approximately its inner boundary and the superior rostral sulcus (H) its ventral boundary; rostrally it extends almost to the margin of the frontal lobe. Cytoarchitecturally it is bounded internally by the ventral anterior cingulate area 24, externally by medial margins of the agranular frontal area 6, intermediate frontal area 8, granular frontal area 9, frontopolar area 10, and prefrontal area 11-1909. (Brodmann19-09). Dorsal region of anterior cingulate gyrus is associated with rational thought processes, most notably active during the Stroop task." [Wikipedia:Brodmann_area_32] +subset: human_subset +subset: mouse_subset synonym: "area 25 of Brodmann-1905" RELATED [NeuroNames:1021] synonym: "area 32 of Brodmann" EXACT [FMA:68629] synonym: "area 32 of Brodmann (guenon)" RELATED [NeuroNames:1021] @@ -327718,6 +342309,8 @@ is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area id: UBERON:0013561 name: Brodmann (1909) area 43 def: "Brodmann area 43 is a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. It was described (but not labeled) on the map of cortical areas in Brodmann-1909, and it was regarded as cytoarchitecturally homologous to area 30 of Mauss in 1908 in the guenon and subcentral area 43 of the human (Brodmann-1909). The Vogts found no distinctive architectonic area of the corresponding location in the guenon (Vogts-1919)." [Wikipedia:Brodmann_area_43] +subset: human_subset +subset: mouse_subset synonym: "area 43 of brodmann" EXACT [FMA:68640] synonym: "area 43 of Brodmann (guenon)" RELATED [NeuroNames:1013] synonym: "area 43 of Brodmann-1909" EXACT [BIRNLEX:1761] @@ -327739,6 +342332,8 @@ is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area [Term] id: UBERON:0013562 name: Brodmann (1909) area 8a +subset: human_subset +subset: mouse_subset synonym: "area 8 of Brodmann (guenon)" RELATED [NeuroNames:1034] synonym: "area 8a of Brodmann-1909" EXACT [BIRNLEX:1762] synonym: "B09-8a" BROAD OMO:0003000 [BIRNLEX:1762, NIFSTD:SumsDB_abbrevSource] @@ -327754,6 +342349,8 @@ is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area id: UBERON:0013573 name: Brodmann (1909) area 40 def: "Brodmann area 40, or BA40, is part of the parietal cortex in the human brain. The inferior part of BA40 is in the area of the supramarginal gyrus, which lies at the posterior end of the lateral fissure, in the inferior lateral part of the parietal lobe. It is bounded approximately by the intraparietal sulcus, the inferior postcentral sulcus, the posterior subcentral sulcus and the lateral sulcus. Cytoarchitecturally it is bounded caudally by the angular area 39 (H), rostrally and dorsally by the caudal postcentral area 2, and ventrally by the subcentral area 43 and the superior temporal area 22 (Brodmann-1909). Cytoarchitectonically defined subregions of rostral BA40/the supramarginal gyrus are PF, PFcm, PFm, PFop, and PFt. Area PF is the homologue to macaque area PF, part of the mirror neuron system, and active in humans during imitation. The supramarginal gyrus part of Brodmann area 40 is the region in the inferior parietal lobe that is involved in reading both in regards to meaning and phonology. [WP,unvetted]." [Wikipedia:Supramarginal_gyrus] +subset: human_subset +subset: mouse_subset synonym: "area 40 of Brodmann" EXACT [FMA:68637] synonym: "area 40 of Brodmann-1909" EXACT [BIRNLEX:1773] synonym: "area supramarginalis" EXACT [BIRNLEX:1773] @@ -327775,6 +342372,8 @@ relationship: part_of UBERON:0002688 {notes="consider merging many sources treat id: UBERON:0013581 name: metapodium bone 1 def: "A metapodium bone that is part of a digit 1 plus metapodial segment." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "metapodium 1" EXACT [] synonym: "metapodium I" EXACT [] is_a: UBERON:0003821 ! metapodium bone @@ -327786,6 +342385,8 @@ relationship: part_of UBERON:5006048 ! digit 1 plus metapodial segment id: UBERON:0013582 name: metapodium bone 2 def: "A metapodium bone that is part of a digit 2 plus metapodial segment." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "metapodium 2" EXACT [] synonym: "metapodium II" EXACT [] is_a: UBERON:0003821 ! metapodium bone @@ -327797,6 +342398,8 @@ relationship: part_of UBERON:5006049 ! digit 2 plus metapodial segment id: UBERON:0013583 name: metapodium bone 3 def: "A metapodial bone that is associated with digit III." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "3rd metapodium bone" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "cannon bone" NARROW [NCBITaxon:9788, Wikipedia:Equine_forelimb_anatomy#Metacarpal_bones] synonym: "metapodial bone III" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -327811,6 +342414,8 @@ relationship: part_of UBERON:5006050 ! digit 3 plus metapodial segment id: UBERON:0013584 name: metapodium bone 4 def: "A metapodium bone that is part of a digit 4 plus metapodial segment." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "metapodium 4" EXACT [] synonym: "metapodium IV" EXACT [] is_a: UBERON:0003821 ! metapodium bone @@ -327822,6 +342427,8 @@ relationship: part_of UBERON:5006051 ! digit 4 plus metapodial segment id: UBERON:0013585 name: metapodium bone 5 def: "A metapodium bone that is part of a digit 5 plus metapodial segment." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "metapodium 5" EXACT [] synonym: "metapodium V" EXACT [] is_a: UBERON:0003821 ! metapodium bone @@ -327833,15 +342440,17 @@ relationship: part_of UBERON:5006052 ! digit 5 plus metapodial segment id: UBERON:0013586 name: fused metapodial bones 3 and 4 def: "An element formed from the fusion of metapodium 3 and metapodium 4 (i.e. either metatarsals 3 and 4 or metacarpals 3 and 4)." [http://orcid.org/0000-0001-7920-5321] +subset: human_subset +subset: mouse_subset synonym: "fused metapodials 3/4" EXACT [] synonym: "metapodial 3+4" RELATED [] synonym: "os metapodiale III et IV" EXACT OMO:0003011 [] is_a: UBERON:0003821 ! metapodium bone intersection_of: UBERON:0003821 ! metapodium bone -intersection_of: derived_from_ancestral_fusion_of UBERON:0013583 ! metapodium bone 3 -intersection_of: derived_from_ancestral_fusion_of UBERON:0013584 ! metapodium bone 4 -relationship: derived_from_ancestral_fusion_of UBERON:0013583 ! metapodium bone 3 -relationship: derived_from_ancestral_fusion_of UBERON:0013584 ! metapodium bone 4 +intersection_of: has_fused_element UBERON:0013583 ! metapodium bone 3 +intersection_of: has_fused_element UBERON:0013584 ! metapodium bone 4 +relationship: has_fused_element UBERON:0013583 ! metapodium bone 3 +relationship: has_fused_element UBERON:0013584 ! metapodium bone 4 relationship: present_in_taxon NCBITaxon:91561 ! Artiodactyla property_value: curator_notes "this class can be used in annotation when it is unclear whether the element is a fusion of the metacarpal and metatarsal elements." xsd:string @@ -327849,38 +342458,44 @@ property_value: curator_notes "this class can be used in annotation when it is u id: UBERON:0013587 name: fused metacarpal bones 3 and 4 def: "An element formed from the fusion of metacarpal 3 and metacarpal 4." [http://orcid.org/0000-0001-7920-5321] +subset: human_subset +subset: mouse_subset synonym: "fused metacarpal 3/4" EXACT [] synonym: "metacarpal 3+4" RELATED [] synonym: "os metacarpale III et IV" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013586 ! fused metapodial bones 3 and 4 intersection_of: UBERON:0002374 ! metacarpal bone -intersection_of: derived_from_ancestral_fusion_of UBERON:0003647 ! metacarpal bone of digit 3 -intersection_of: derived_from_ancestral_fusion_of UBERON:0003648 ! metacarpal bone of digit 4 -relationship: derived_from_ancestral_fusion_of UBERON:0003647 ! metacarpal bone of digit 3 -relationship: derived_from_ancestral_fusion_of UBERON:0003648 ! metacarpal bone of digit 4 +intersection_of: has_fused_element UBERON:0003647 ! metacarpal bone of digit 3 +intersection_of: has_fused_element UBERON:0003648 ! metacarpal bone of digit 4 +relationship: has_fused_element UBERON:0003647 ! metacarpal bone of digit 3 +relationship: has_fused_element UBERON:0003648 ! metacarpal bone of digit 4 property_value: taxon_notes "In many artiodactyls, the 3rd & 4th metapodials are fused, creating a main metapodial." xsd:string [Term] id: UBERON:0013588 name: fused metatarsal bones 3 and 4 def: "An element formed from the fusion of metatarsal 3 and metatarsal 4." [http://orcid.org/0000-0001-7920-5321] +subset: human_subset +subset: mouse_subset synonym: "fused metatarsal 3/4" EXACT [] synonym: "metatarsal 3+4" RELATED [] synonym: "os metatarsale III et IV (Ru)" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013586 ! fused metapodial bones 3 and 4 intersection_of: UBERON:0001448 ! metatarsal bone -intersection_of: derived_from_ancestral_fusion_of UBERON:0003652 ! metatarsal bone of digit 3 -intersection_of: derived_from_ancestral_fusion_of UBERON:0003653 ! metatarsal bone of digit 4 -relationship: derived_from_ancestral_fusion_of UBERON:0003652 ! metatarsal bone of digit 3 -relationship: derived_from_ancestral_fusion_of UBERON:0003653 ! metatarsal bone of digit 4 +intersection_of: has_fused_element UBERON:0003652 ! metatarsal bone of digit 3 +intersection_of: has_fused_element UBERON:0003653 ! metatarsal bone of digit 4 +relationship: has_fused_element UBERON:0003652 ! metatarsal bone of digit 3 +relationship: has_fused_element UBERON:0003653 ! metatarsal bone of digit 4 property_value: taxon_notes "In many artiodactyls, the 3rd & 4th metapodials are fused, creating a main metapodial." xsd:string [Term] id: UBERON:0013589 name: koniocortex def: "Regions of the cerebal cortex characterized by a particularly well-developed inner granular layer (layer 4); this type of cerebral cortex is represented by the primary sensory Brodmann area 17 of the visual cortex, Brodmann areas 1-3 of the somatic sensory cortex, and Brodmann area 41 of the auditory cortex." [http://www.medilexicon.com/medicaldictionary.php?t=47303] +subset: human_subset +subset: mouse_subset xref: neuronames:2471 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex @@ -327889,37 +342504,51 @@ relationship: part_of UBERON:0000956 ! cerebral cortex id: UBERON:0013590 name: cruciate sulcus def: "A deep groove which runs transversely across the rostro-dorsal surface of the cerebrum and which is one of the landmarks on the cerebral cortex." [http://medical-dictionary.thefreedictionary.com/cruciate+sulcus] +subset: human_subset +subset: mouse_subset synonym: "cruciate sulci" EXACT OMO:0003004 [] is_a: UBERON:0013118 ! sulcus of brain [Term] id: UBERON:0013591 name: postsylvian sulcus +subset: human_subset +subset: mouse_subset is_a: UBERON:0008334 ! subarachnoid sulcus [Term] id: UBERON:0013592 name: presylvian sulcus +subset: human_subset +subset: mouse_subset is_a: UBERON:0008334 ! subarachnoid sulcus [Term] id: UBERON:0013593 name: suprasylvian sulcus +subset: human_subset +subset: mouse_subset is_a: UBERON:0008334 ! subarachnoid sulcus [Term] id: UBERON:0013594 name: ectosylvian sulcus +subset: human_subset +subset: mouse_subset is_a: UBERON:0008334 ! subarachnoid sulcus [Term] id: UBERON:0013595 name: postlateral sulcus +subset: human_subset +subset: mouse_subset is_a: UBERON:0008334 ! subarachnoid sulcus [Term] id: UBERON:0013596 name: brain coronal sulcus +subset: human_subset +subset: mouse_subset synonym: "coronal sulcus" BROAD INCONSISTENT [] synonym: "coronal sulcus of brain" EXACT [] is_a: UBERON:0008334 ! subarachnoid sulcus @@ -327928,6 +342557,8 @@ is_a: UBERON:0008334 ! subarachnoid sulcus id: UBERON:0013598 name: accessory nucleus of optic tract def: "One of a set of small groups of neuron cell bodies located along the trajectory of optic fibers in the mesencephalon. These consist of the posterior nucleus [TA] (nucleus posterior [TA]), medial nucleus [TA] (nucleus medialis [TA]), and lateral nucleus [TA] (nucleus lateralis [TA]), which are also called the posterior, medial, and lateral terminal nuclei. The connections of these nuclei, along with the nucleus of the optic tract, make up the accessory optic system that appears to be concerned with retinal slip in specific directions." [http://www.medilexicon.com/medicaldictionary.php?t=61308] +subset: human_subset +subset: mouse_subset synonym: "nuclei accessorii tractus optici" EXACT OMO:0003011 [] synonym: "nucleus of accessory optic system" EXACT [] synonym: "terminal nucleus of accessory optic tract" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=61308] @@ -327942,6 +342573,8 @@ property_value: taxon_notes "most vertebrates have at least one AON. Mammals hav [Term] id: UBERON:0013599 name: dorsal accessory nucleus of optic tract +subset: human_subset +subset: mouse_subset synonym: "dorsal terminal nucleus of accessory optic tract" EXACT [] synonym: "dorsal terminal nucleus of the accessory optic tract" EXACT [ABA:DT] synonym: "nucleus accessorius posterior tractus optici" EXACT OMO:0003011 [FMA:77651, FMA:TA] @@ -327957,6 +342590,8 @@ is_a: UBERON:0013598 {source="FMA"} ! accessory nucleus of optic tract [Term] id: UBERON:0013600 name: lateral accessory nucleus of optic tract +subset: human_subset +subset: mouse_subset synonym: "lateral terminal nucleus of the accessory optic tract" EXACT [ABA:LT] synonym: "nucleus accessorius lateralis tractus optici" EXACT OMO:0003011 [FMA:77652, FMA:TA] xref: BAMS:LT @@ -327971,6 +342606,8 @@ disjoint_from: UBERON:0013601 {source="lexical"} ! medial accessory nucleus of o id: UBERON:0013601 name: medial accessory nucleus of optic tract comment: The medial terminal nucleus is usually very prominent but it is reduced in primates (except, curiously, the tarsier), megachiropterans, Cynocephalus and Bradypus. Metatherians have a large medial terminal nucleus[Pettigrew et al. (1989)] +subset: human_subset +subset: mouse_subset synonym: "medial terminal nucleus of the accessory optic tract" EXACT [ABA:MT] synonym: "nucleus accessorius medialis tractus optici" EXACT OMO:0003011 [FMA:77653, FMA:TA] xref: BAMS:MT @@ -327982,6 +342619,8 @@ is_a: UBERON:0013598 {source="FMA"} ! accessory nucleus of optic tract [Term] id: UBERON:0013605 name: layer of lateral geniculate body +subset: human_subset +subset: mouse_subset is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer intersection_of: UBERON:0022303 ! nervous system cell part layer @@ -327992,6 +342631,8 @@ relationship: part_of UBERON:0001926 ! lateral geniculate body id: UBERON:0013606 name: magnocellular layer of dorsal nucleus of lateral geniculate body comment: Rods; necessary for the perception of movement, depth, and small differences in brightness[WP] +subset: human_subset +subset: mouse_subset synonym: "lateral geniculate nucleus magnocellular layer" EXACT [] synonym: "magnocellular layer of lateral geniculate nucleus" EXACT [] synonym: "strata magnocellularia" BROAD [] @@ -328009,6 +342650,8 @@ relationship: part_of UBERON:0002479 ! dorsal lateral geniculate nucleus id: UBERON:0013607 name: parvocellular layer of dorsal nucleus of lateral geniculate body comment: Cones; long- and medium-wavelength ("red" and "green" cones); necessary for the perception of color and form (fine details).[WP] +subset: human_subset +subset: mouse_subset synonym: "parvocellular layer of lateral geniculate nucleus" EXACT [] synonym: "strata parvocellularia" BROAD [] synonym: "strata parvocellularia nuclei dorsalis corporis geniculati lateralis" EXACT OMO:0003011 [FMA:76992, FMA:TA] @@ -328023,6 +342666,8 @@ relationship: part_of UBERON:0002479 ! dorsal lateral geniculate nucleus [Term] id: UBERON:0013608 name: inferior olive dorsal accessory nucleus +subset: human_subset +subset: mouse_subset synonym: "dorsal accessory nucleus of inferior olivary complex" EXACT [] xref: EMAPA:37612 {source="MA:th"} xref: MA:0001042 @@ -328032,6 +342677,8 @@ is_a: UBERON:0007244 {source="MA-inferred"} ! inferior olivary nucleus [Term] id: UBERON:0013609 name: inferior olive medial accessory nucleus +subset: human_subset +subset: mouse_subset synonym: "medial accessory nucleus of inferior olivary complex" EXACT [] xref: EMAPA:37613 {source="MA:th"} xref: MA:0001044 @@ -328041,12 +342688,16 @@ is_a: UBERON:0007244 {source="MA-inferred"} ! inferior olivary nucleus [Term] id: UBERON:0013610 name: inferior olive ventral accessory nucleus +subset: human_subset +subset: mouse_subset synonym: "ventral accessory nucleus of inferior olivary complex" EXACT [] is_a: UBERON:0007244 {source="cjm"} ! inferior olivary nucleus [Term] id: UBERON:0013612 name: lower jaw cingulum +subset: human_subset +subset: mouse_subset synonym: "cingulid" BROAD [] synonym: "tooth cingulid" RELATED [] is_a: UBERON:0017295 ! cingulum of tooth @@ -328057,6 +342708,8 @@ relationship: part_of UBERON:0001710 ! lower jaw region [Term] id: UBERON:0013613 name: upper jaw cingulum +subset: human_subset +subset: mouse_subset is_a: UBERON:0017295 ! cingulum of tooth intersection_of: UBERON:0017295 ! cingulum of tooth intersection_of: part_of UBERON:0001709 ! upper jaw region @@ -328067,6 +342720,8 @@ property_value: external_definition "A ridge that girdles the base of a upper mo id: UBERON:0013614 name: fasciculus aberans def: "The fasciulus aberrans is a distinct bundle of fibers at the dorsal aspect of the anterior commisure. These fibers travel in the internal capsule between the putamen and caudate nuclei, and cross the midline to connect the dorsal neocortex of the two hemispheres. When the fasciculus aberrans is absent, the fibers connecting the neocortex of the two hemispheres takes a diffderent route through the external capsule[Johnson et al., (1982a, 1982b, 1994)]." [MorphoBank:177] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002473 ! intercerebral commissure is_a: UBERON:0005838 {source="cjm"} ! fasciculus of brain is_a: UBERON:0022248 ! cerebral nerve fasciculus @@ -328075,6 +342730,8 @@ is_a: UBERON:0022248 ! cerebral nerve fasciculus id: UBERON:0013615 name: koniocellular layer of dorsal nucleus of lateral geniculate body comment: Short-wavelength "blue" cones.[WP] +subset: human_subset +subset: mouse_subset synonym: "konioocellular layer of lateral geniculate nucleus" EXACT [] synonym: "stratum koniocellulare nuclei dorsalis corporis geniculati lateralis" EXACT OMO:0003011 [FMA:76988, FMA:TA] xref: FMA:76988 @@ -328084,6 +342741,8 @@ relationship: part_of UBERON:0002479 ! dorsal lateral geniculate nucleus [Term] id: UBERON:0013616 name: primary molar tooth +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "deciduous molar tooth" EXACT [FMA:84206] synonym: "primary molar tooth" EXACT [FMA:84206] @@ -328101,6 +342760,8 @@ property_value: editor_note "TODO - logical definition" xsd:string id: UBERON:0013617 name: upper primary molar tooth def: "A primary molar tooth that is part of a upper jaw region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "primary upper molar tooth" EXACT [] synonym: "upper deciduous molar" EXACT [] synonym: "upper deciduous molar tooth" EXACT [FMA:84210] @@ -328117,6 +342778,8 @@ relationship: part_of UBERON:0001709 ! upper jaw region [Term] id: UBERON:0013618 name: secondary molar tooth +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "permanent molar tooth" EXACT [FMA:84207] synonym: "secondary molar tooth" EXACT [FMA:84207] @@ -328132,6 +342795,8 @@ relationship: part_of UBERON:0007774 ! secondary dentition id: UBERON:0013619 name: upper secondary molar tooth def: "A secondary molar tooth that is part of a upper jaw region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "maxillary secondary molar tooth" EXACT [FMA:55720] synonym: "upper permanent molar tooth" EXACT [FMA:55720] synonym: "upper secondary molar tooth" EXACT [FMA:55720] @@ -328147,6 +342812,8 @@ relationship: part_of UBERON:0001709 ! upper jaw region id: UBERON:0013620 name: lower primary molar tooth def: "A primary molar tooth that is part of a lower jaw region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lower deciduous molar tooth" EXACT [FMA:84213] synonym: "primary lower molar tooth" EXACT [] xref: FMA:84213 @@ -328162,6 +342829,8 @@ relationship: part_of UBERON:0001710 ! lower jaw region id: UBERON:0013621 name: lower secondary molar tooth def: "A secondary molar tooth that is part of a lower jaw region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lower permanent molar" EXACT [] synonym: "lower permanent molar tooth" EXACT [FMA:55721] synonym: "mandibular secondary molar tooth" EXACT [FMA:55721] @@ -328177,6 +342846,8 @@ relationship: part_of UBERON:0001710 ! lower jaw region id: UBERON:0013622 name: manual autopod pad def: "An autopod pad that is part of a manus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot pad of manus" RELATED [] synonym: "manual foot pad" RELATED [] is_a: UBERON:0001519 ! skin of manus @@ -328189,6 +342860,8 @@ relationship: part_of UBERON:0002398 ! manus id: UBERON:0013623 name: pedal autopod pad def: "An autopod pad that is part of a pes." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot pad of pes" RELATED [] synonym: "pedal foot pad" RELATED [] is_a: UBERON:0001513 ! skin of pes @@ -328200,6 +342873,8 @@ relationship: part_of UBERON:0002387 ! pes [Term] id: UBERON:0013626 name: medial metatarsal pad +subset: human_subset +subset: mouse_subset synonym: "thenar pad" EXACT [] is_a: UBERON:0008840 ! plantar pad disjoint_from: UBERON:0013627 {source="lexical"} ! lateral metatarsal pad @@ -328207,12 +342882,16 @@ disjoint_from: UBERON:0013627 {source="lexical"} ! lateral metatarsal pad [Term] id: UBERON:0013627 name: lateral metatarsal pad +subset: human_subset +subset: mouse_subset synonym: "hypothenar pad" EXACT [] is_a: UBERON:0008840 ! plantar pad [Term] id: UBERON:0013628 name: pollical pad +subset: human_subset +subset: mouse_subset synonym: "interdigital pad 1 of manus" EXACT [] is_a: UBERON:0003533 ! manual digit skin is_a: UBERON:0012349 ! digital pad @@ -328222,6 +342901,8 @@ relationship: part_of UBERON:0001463 ! manual digit 1 [Term] id: UBERON:0013629 name: hallical pad +subset: human_subset +subset: mouse_subset synonym: "interdigital pad 1 of pes" EXACT [] is_a: UBERON:0003530 ! pedal digit skin is_a: UBERON:0012349 ! digital pad @@ -328232,6 +342913,8 @@ relationship: part_of UBERON:0003631 ! pedal digit 1 id: UBERON:0013630 name: short bone def: "Short bones are designated as those bones that are as wide as they are long. Their primary function is to provide support and stability with little to no movement. They are one of five types of bones: long, short, flat, irregular and sesamoid. Examples of these bones include the tarsals in the foot and the carpals in the hand." [Wikipedia:Short_bone] +subset: human_subset +subset: mouse_subset xref: FMA:7475 xref: NCIT:C33545 xref: SCTID:332807009 @@ -328244,6 +342927,8 @@ id: UBERON:0013631 name: sesamoid element def: "Ossicle that develops within bands of dense, regular connective tissue (e.g., tendons and ligaments). Sesamoids are generally located proximate to a bony prominence, over which the dense regular connective tissue wraps, and/or a joint or articulation." [PSPUB:0000169, VSAO:0000137] comment: Sesamoids are often endochondral replacement elements and in addition to bone tissue, may also be composed of articular cartilage, fibrocartilage, hyaline cartilage, and calcified cartilage. +subset: human_subset +subset: mouse_subset synonym: "sesamoid" EXACT [VSAO:0000137] xref: VSAO:0000137 is_a: UBERON:0010911 {source="VSAO"} ! ossicle @@ -328254,6 +342939,8 @@ relationship: in_taxon NCBITaxon:7742 ! Vertebrata id: UBERON:0013632 name: sesamoid cartilage def: "A sesamoid element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cartilago sesamoidea" EXACT [FMA:55379] synonym: "sesamoid cartilage of cricopharyngeal ligament" EXACT [FMA:55379] xref: FMA:55379 @@ -328268,6 +342955,8 @@ id: UBERON:0013633 name: intertrochanteric crest def: "The intertrochanteric crest is a bony ridge located on the posterior side of the head of the femur, stretching obliquely downward and medially from the summit of the greater trochanter to the lesser trochanter." [Wikipedia:Intertrochanteric_crest] comment: Together with the intertrochanteric line on the anterior side of the head, the crest mark the transition between of the neck of femur into the shaft of femur. An elevation between the middle and proximal third of the crest is known as the quadrate tubercle. The upper half of the crest forms the posterior border of the greater trochanter. The distal capsular attachment on the femur follows the shape of the irregular rim between the head and the neck. As a consequence, the capsule of the hip joint attaches in the region of the intertrochanteric line on the anterior side, but a finger away from the intertrochanteric crest on the posterior side of the head +subset: human_subset +subset: mouse_subset xref: FMA:75100 xref: Wikipedia:Intertrochanteric_crest is_a: UBERON:0006800 ! anatomical line @@ -328279,6 +342968,8 @@ relationship: part_of UBERON:0004412 ! proximal epiphysis of femur id: UBERON:0013634 name: intertrochanteric line def: "The intertrochanteric line (or spiral line of the femur) is a line located on the anterior side of the proximal end of the femur that stretches between the lesser trochanter and the greater trochanter forming the base of the neck of the femur, roughly following the direction of the shaft of the femur." [Wikipedia:Intertrochanteric_line] +subset: human_subset +subset: mouse_subset xref: FMA:74587 xref: Wikipedia:Intertrochanteric_line is_a: UBERON:0006800 {source="FMA"} ! anatomical line @@ -328287,6 +342978,8 @@ relationship: part_of UBERON:0004412 ! proximal epiphysis of femur [Term] id: UBERON:0013635 name: sphincter colli muscle +subset: human_subset +subset: mouse_subset synonym: "sphincter colli" EXACT [] is_a: UBERON:0002377 ! muscle of neck property_value: structure_notes "The m. sphincter in the head region can be divided into 2 layers: M. sphincter colli profundus and superficialis; in studied placentals, the deepest layer has circular fibers, while the superficial layer has oblique and longitudinal fibers. In non-mammalian vertebrates (if differentiated) and in monotremes both the superficialis and the profundus layers are circular ('sphincter') muscles (Shumacher, 1956; Saban, 1971)." xsd:string {source="MorphoBank"} @@ -328295,6 +342988,8 @@ property_value: structure_notes "The m. sphincter in the head region can be divi id: UBERON:0013636 name: epithelium of intestinal villus def: "An epithelium that is part of a intestinal villus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "intestinal villus epithelium" EXACT [FMA:63587] synonym: "villous epithelium" RELATED [] synonym: "villus epithelium" RELATED [] @@ -328309,6 +343004,8 @@ relationship: part_of UBERON:0001902 {source="FMA"} ! epithelium of small intest id: UBERON:0013637 name: prostate gland lateral lobe def: "The prostate gland lobe that is located on the lateral side of the organ." [ncithesaurus:Lateral_Lobe_of_the_Prostate] +subset: human_subset +subset: mouse_subset synonym: "lateral lobe of prostate" EXACT [FMA:19577] synonym: "lateral lobe of prostate gland" EXACT [FMA:19577] synonym: "lateral prostate" RELATED [] @@ -328327,6 +343024,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero [Term] id: UBERON:0013638 name: horny papilla of tongue +subset: human_subset +subset: mouse_subset synonym: "horny papilla" EXACT [] synonym: "horny papillae" RELATED OMO:0003004 [] is_a: UBERON:0001726 ! papilla of tongue @@ -328335,6 +343034,8 @@ property_value: taxon_notes "In carnivores, functions to hold on to meat as it i [Term] id: UBERON:0013639 name: mechanical papilla of tongue +subset: human_subset +subset: mouse_subset synonym: "mechanical papilla" EXACT [] synonym: "mechanical papillae" RELATED OMO:0003004 [] is_a: UBERON:0001726 ! papilla of tongue @@ -328343,6 +343044,8 @@ is_a: UBERON:0001726 ! papilla of tongue id: UBERON:0013640 name: internal cheek pouch comment: Lined with oral epithelium +subset: human_subset +subset: mouse_subset synonym: "internal buccal pouch" EXACT [] is_a: UBERON:0008802 ! cheek pouch relationship: has_part UBERON:0002424 ! oral epithelium @@ -328351,6 +343054,8 @@ relationship: has_part UBERON:0002424 ! oral epithelium id: UBERON:0013641 name: external cheek pouch comment: may be lined with fur +subset: human_subset +subset: mouse_subset synonym: "external buccal pouch" EXACT [] is_a: UBERON:0008802 ! cheek pouch @@ -328378,6 +343083,8 @@ id: UBERON:0013644 name: duodenal ampulla def: "The very first part of the duodenum which is slightly dilated." [Wikipedia:Duodenal_cap] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ampulla (duodenum)" EXACT [FMA:14927] synonym: "ampulla duodeni" EXACT [FMA:TA] synonym: "ampulla of duodenum" EXACT [FMA:14927] @@ -328399,6 +343106,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/s id: UBERON:0013645 name: gular gland def: "A gland that is part of the gular region (throat)." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0011154 ! gular region @@ -328408,6 +343117,8 @@ relationship: part_of UBERON:0011154 ! gular region id: UBERON:0013646 name: buccal nerve def: "The buccal nerve (also called the long buccal nerve) is a nerve in the face. It is a branch of the mandibular nerve (which is itself a branch of the trigeminal nerve) and transmits sensory information from skin over the buccal membrane (in general, the cheek) and from the second and third molar teeth." [Wikipedia:Buccal_nerve] +subset: human_subset +subset: mouse_subset synonym: "buccinator branch" RELATED [Wikipedia:Buccal_nerve] synonym: "buccinator nerve" EXACT [FMA:53066] synonym: "long buccal nerve" EXACT [FMA:53066] @@ -328425,6 +343136,8 @@ relationship: part_of UBERON:0000375 ! mandibular nerve id: UBERON:0013647 name: lateral pterygoid nerve def: "A nerve that innervates the lateral pterygoid muscle." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "branch of buccal nerve to lateral pterygoid" EXACT [FMA:53107] synonym: "external pterygoid nerve" RELATED [Wikipedia:Lateral_pterygoid_nerve] synonym: "nerve to lateral pterygoid" EXACT [FMA:53107] @@ -328445,6 +343158,8 @@ id: UBERON:0013648 name: masseteric artery def: "The masseteric artery is small and passes laterally through the mandibular notch to the deep surface of the masseter muscle, which it supplies. It anastomoses with the masseteric branches of the external maxillary artery and with the transverse facial artery." [Wikipedia:Masseteric_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria masseterica" EXACT OMO:0003011 [Wikipedia:Masseteric_artery] xref: FMA:49739 xref: NCIT:C53052 @@ -328463,16 +343178,18 @@ relationship: supplies UBERON:0001597 ! masseter muscle id: UBERON:0013649 name: fused tarsal bones 1 and 2 def: "A tarsal bone that is formed from the fusion of the 1st and 2nd tarsal bones." [UBERON:skansa] +subset: human_subset +subset: mouse_subset synonym: "fused tarsals 1 and 2" EXACT [] synonym: "os cuneiforme mediointermedium" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] synonym: "os tarsale I et II" EXACT OMO:0003011 [NominaAnatomicaVeterinaria:2005] synonym: "tarsals 1+2" RELATED [] is_a: UBERON:0010721 ! distal tarsal bone intersection_of: UBERON:0001447 ! tarsal bone -intersection_of: derived_from_ancestral_fusion_of UBERON:0001452 ! distal tarsal bone 1 -intersection_of: derived_from_ancestral_fusion_of UBERON:0001453 ! distal tarsal bone 2 -relationship: derived_from_ancestral_fusion_of UBERON:0001452 ! distal tarsal bone 1 -relationship: derived_from_ancestral_fusion_of UBERON:0001453 ! distal tarsal bone 2 +intersection_of: has_fused_element UBERON:0001452 ! distal tarsal bone 1 +intersection_of: has_fused_element UBERON:0001453 ! distal tarsal bone 2 +relationship: has_fused_element UBERON:0001452 ! distal tarsal bone 1 +relationship: has_fused_element UBERON:0001453 ! distal tarsal bone 2 relationship: present_in_taxon NCBITaxon:9788 ! Equidae [Term] @@ -328493,6 +343210,8 @@ relationship: skeleton_of UBERON:0012121 ! respiratory velum [Term] id: UBERON:0013655 name: elastica externa of notochord +subset: human_subset +subset: mouse_subset synonym: "elastica externa" EXACT [XAO:0001020] synonym: "membrana elastica externa" EXACT [] synonym: "notochordal sheath" RELATED [XAO:0001020] @@ -328632,6 +343351,8 @@ relationship: part_of UBERON:0013674 ! ctenactinium id: UBERON:0013678 name: anatomical line between inner canthi def: "An anatomical line of the face that connects the two inner (medial) canthi of the eye. The length of this line is known as the inter canthal distance." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "bicanthal plane" RELATED [] synonym: "inter inner canthal line" EXACT [] synonym: "inter medial canthal line" EXACT [] @@ -328651,6 +343372,8 @@ relationship: part_of UBERON:0001456 ! face id: UBERON:0013679 name: inner canthus of right eye def: "An inner canthus that is part of a right eye." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "medial angle of right eye" RELATED [FMA:59319] synonym: "medial canthus of right eye" RELATED [FMA:59319] synonym: "right inner canthus" EXACT [] @@ -328666,6 +343389,8 @@ relationship: part_of UBERON:0004549 ! right eye id: UBERON:0013680 name: inner canthus of left eye def: "An inner canthus that is part of a left eye." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left inner canthus" EXACT [] synonym: "left medial canthus" EXACT [] synonym: "left medial palpebral commissure" EXACT [FMA:59320] @@ -328681,6 +343406,8 @@ relationship: part_of UBERON:0004548 ! left eye id: UBERON:0013682 name: peripheral region of retina def: "Region of retina that extends from central retina to ora serrata. Peripheral retina is dominated by rods and also has less ganglion cells and is not as thick as central retina. It is responsible for peripheral and night vision." [https://github.com/obophenotype/uberon/issues/1542, https://github.com/obophenotype/uberon/issues/216, https://webvision.med.utah.edu/book/part-i-foundations/simple-anatomy-of-the-retina/, XAO:0004458] +subset: human_subset +subset: mouse_subset synonym: "peripheral retina" EXACT [XAO:0004458] xref: SCTID:264141008 xref: XAO:0004458 @@ -328693,6 +343420,8 @@ property_value: external_definition "Anatomical region comprising the peripheral id: UBERON:0013683 name: left dorsal thalamus def: "A dorsal thalamus that is in_the_left_side_of a diencephalon." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "left thalamus" BROAD [FMA:258716] xref: FMA:258716 @@ -328707,6 +343436,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0013684 name: right dorsal thalamus def: "A dorsal thalamus that is in_the_right_side_of a diencephalon." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "right thalamus" BROAD [FMA:258714] xref: FMA:258714 @@ -328721,6 +343452,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0013685 name: foramen of skull def: "Anatomical space that is an opening in a bone of the skull." [http://orcid.org/0000-0002-6601-2165, TAO:curator] +subset: human_subset +subset: mouse_subset synonym: "cranial conduit" NARROW [FMA:53165] synonym: "cranial foramen" NARROW [] synonym: "foramen of skull" EXACT [Wikipedia:Foramina_of_the_skull] @@ -328738,6 +343471,8 @@ id: UBERON:0013686 name: anatomical conduit space def: "An anatomical space which is the lumen of some anatomical conduit and connects two or more spaces together[FMA,modified]." [FMA:9338, http://orcid.org/0000-0002-6601-2165] subset: common_anatomy +subset: human_subset +subset: mouse_subset synonym: "foramen space" NARROW [] xref: FMA:9338 is_a: UBERON:0000464 {source="FMA"} ! anatomical space @@ -328752,6 +343487,8 @@ relationship: present_in_taxon NCBITaxon:4751 ! Fungi id: UBERON:0013687 name: pericranium def: "Periosteum that is part of a skull." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "periosteum externum cranii" EXACT OMO:0003011 [FMA:76623, FMA:TA] xref: FMA:76623 is_a: UBERON:0002515 ! periosteum @@ -328764,6 +343501,8 @@ id: UBERON:0013688 name: tonsil germinal center def: "A germinal center that is part of a tonsil." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "tonsil reaction center" RELATED [CALOHA:TS-1288] xref: CALOHA:TS-1288 is_a: UBERON:0010754 ! germinal center @@ -328778,6 +343517,8 @@ property_value: external_definition "The germinal center or reaction center is t id: UBERON:0013689 name: appendix lymphoid tissue def: "Lymphoid tissue located in the appendix." [CALOHA:TS-1268] +subset: human_subset +subset: mouse_subset synonym: "appendix lymphoid" RELATED [CALOHA:TS-1268] synonym: "lymphatic tissue of appendix" EXACT [OBOL:automatic] synonym: "lymphatic tissue of vermiform appendix" EXACT [OBOL:automatic] @@ -328792,6 +343533,8 @@ id: UBERON:0013691 name: buttock def: "A zone of soft tissue located on the posterior of the lateral side of the pelvic region corresponding to the gluteal muscles." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Buttocks] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "buttocks" RELATED OMO:0003004 [Wikipedia:Buttocks] synonym: "clunis" EXACT [FMA:25245] @@ -328818,6 +343561,8 @@ property_value: has_relational_adjective "gluteal" xsd:string id: UBERON:0013692 name: inframammary fold def: "Inframammary fold, inframammary crease or inframammary line is the feature of human anatomy which is a natural boundary of a breast from below, the place where the breast and the chest meet. The choice of the term depends on the prominence of the feature." [CALOHA:TS-2350] +subset: human_subset +subset: mouse_subset synonym: "inframammary breast" RELATED [CALOHA:TS-2350] synonym: "inframammary crease" RELATED [CALOHA:TS-2350] xref: CALOHA:TS-2350 @@ -328831,6 +343576,8 @@ relationship: part_of UBERON:0002100 ! trunk id: UBERON:0013693 name: cerebral cortex neuropil def: "A neuropil that is part of a cerebral cortex [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "neuropil of cerebral cortex" EXACT [OBOL:automatic] xref: CALOHA:TS-2396 is_a: UBERON:0002606 ! neuropil @@ -328842,6 +343589,8 @@ relationship: part_of UBERON:0000956 ! cerebral cortex id: UBERON:0013694 name: brain endothelium def: "Vascular endothelium found in blood vessels of the blood-brain-barrier." [CALOHA:TS-0092] +subset: human_subset +subset: mouse_subset synonym: "cerebromicrovascular endothelium" RELATED [CALOHA:TS-0092] xref: BTO:0001852 xref: BTO:0003248 @@ -328856,6 +343605,8 @@ relationship: part_of UBERON:0000955 ! brain id: UBERON:0013695 name: colon endothelium def: "Vascular endothelium found in colon blood vessels." [CALOHA:TS-0162] +subset: human_subset +subset: mouse_subset synonym: "colon endothelial cell" RELATED [CALOHA:TS-0162] synonym: "colon endothelial cells" RELATED [CALOHA:TS-0162] synonym: "colonic endothelial cell" RELATED [CALOHA:TS-0162] @@ -328874,6 +343625,8 @@ id: UBERON:0013696 name: tonsil epithelium def: "The epithelium that forms the surface of the tonsil dips into the underlying connective tissue in numerous places, forming crypts kown as tonsillar crypts. Stratified squamous epithelium, that may be heavily infiltrated by lymphocytes. Epithelial cells are present in the germinal as well as in the periphery of the nodule." [CALOHA:TS-2070] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "epithelium of tonsil" RELATED [CALOHA:TS-2070] synonym: "tonsil epithelial cell" RELATED [CALOHA:TS-2070] xref: CALOHA:TS-2070 @@ -328887,6 +343640,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0013697 name: exocrine pancreas epithelium def: "Epithelium lining the exocrine pancreas." [CALOHA:TS-2108] +subset: human_subset +subset: mouse_subset synonym: "epithelium of exocrine pancreas" RELATED [CALOHA:TS-2108] synonym: "exocrine pancreas epithelial cell" RELATED [CALOHA:TS-2108] xref: CALOHA:TS-2108 @@ -328899,6 +343654,8 @@ relationship: part_of UBERON:0000017 ! exocrine pancreas id: UBERON:0013698 name: strand of pubic hair def: "A hair in the frontal genital area of adolescent and adult humans, located on and around the sex organs, the crotch, and sometimes at the top of the inside of the thighs, in the pubic region around the pubis bone." [Wikipedia:Pubic_hair] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "pubic hair" EXACT [FMA:54319] xref: FMA:54319 @@ -328911,6 +343668,8 @@ is_a: UBERON:0001037 ! strand of hair id: UBERON:0013699 name: strand of axillary hair def: "A strand of hair that is part of a axilla." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "axilla hair" EXACT [] synonym: "axillary hair" EXACT [FMA:54253] @@ -328927,6 +343686,8 @@ relationship: part_of UBERON:0009472 ! axilla id: UBERON:0013700 name: axial musculature def: "Musculature of the head and neck, spine, and ribs." [HP:0003327] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000159 xref: EMAPA:18166 is_a: UBERON:0001015 ! musculature @@ -328941,6 +343702,8 @@ relationship: part_of UBERON:0013701 ! main body axis id: UBERON:0013701 name: main body axis def: "A principle subdivision of an organism that includes all structures along the primary axis, typically the anterior-posterior axis, from head to tail, including structures of the body proper where present (for example, ribs), but excluding appendages." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: non_informative is_a: UBERON:0000475 ! organism subdivision relationship: in_taxon NCBITaxon:6072 ! Eumetazoa @@ -328949,6 +343712,8 @@ relationship: in_taxon NCBITaxon:6072 ! Eumetazoa id: UBERON:0013702 name: body proper def: "The region of the organism associated with the visceral organs." [AEO:0000103] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "body" RELATED [AEO:0000103] synonym: "whole body" RELATED [BTO:0001489] @@ -328963,6 +343728,8 @@ property_value: external_definition "Cardinal body part, which consists of a max id: UBERON:0013703 name: integumentary projection def: "Anatomical projection that is part of the integumentl system." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "skin projection" NARROW [] is_a: UBERON:0004529 ! anatomical projection is_a: UBERON:0006003 ! integumentary adnexa @@ -328974,6 +343741,8 @@ relationship: part_of UBERON:0002416 ! integumental system id: UBERON:0013704 name: notochordal canal def: "A tubular passage that extends from the primitive pit into the head process during the early stages of embryonic development in mammals. It perforates the splanchnopleure layer so that the yolk sac and the amnion are connected temporarily." [http://medical-dictionary.thefreedictionary.com/notochordal+canal] +subset: human_subset +subset: mouse_subset synonym: "chordal canal" RELATED [] xref: FMA:293127 xref: NCIT:C34230 @@ -328988,6 +343757,8 @@ relationship: part_of UBERON:0006268 ! notochordal process id: UBERON:0013705 name: fascia of Scarpa def: "The deep layer (fascia of Scarpa) is a layer of the anterior abdominal wall." [Wikipedia:Fascia_of_Scarpa] +subset: human_subset +subset: mouse_subset synonym: "Colles fascia" RELATED [FMA:19923] synonym: "Colles' fascia" EXACT [FMA:19923] synonym: "deep layer of superficial fascia of abdomen" EXACT [FMA:19923] @@ -329006,6 +343777,8 @@ relationship: part_of UBERON:0006635 ! anterior abdominal wall [Term] id: UBERON:0013706 name: bone spine +subset: human_subset +subset: mouse_subset xref: FMA:82508 is_a: UBERON:0004530 {source="cjm"} ! bony projection @@ -329013,6 +343786,8 @@ is_a: UBERON:0004530 {source="cjm"} ! bony projection id: UBERON:0013707 name: iliac spine def: "A bone spine that is part of a ilium." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:82509 xref: SCTID:272712007 xref: Wikipedia:Iliac_spine @@ -329026,6 +343801,8 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:0013708 name: anterior superior iliac spine def: "The anterior superior iliac spine (ASIS) is an important landmark of surface anatomy. It refers to the anterior extremity of the iliac crest of the pelvis, which provides attachment for the inguinal ligament, the sartorius muscle, and the tensor fasciae latae. ASIS provides a clue in identifying some other clinical landmarks, including: McBurney's point Gardner's line Roser-NC)laton line A - Anterior (front, like the face) S - Superior (towards the head, opposite to feet) I - Iliac S - Spine." [Wikipedia:Anterior_superior_iliac_spine] +subset: human_subset +subset: mouse_subset synonym: "anterior superior iliac spine" RELATED [Wikipedia:Anterior_superior_iliac_spine] synonym: "anterior superior iliac spine (volume)" EXACT [FMA:49465] synonym: "anterior superior spine" RELATED [Wikipedia:Anterior_superior_iliac_spine] @@ -329039,6 +343816,8 @@ disjoint_from: UBERON:0013710 {source="lexical"} ! posterior superior iliac spin id: UBERON:0013709 name: anterior inferior iliac spine def: "The anterior inferior iliac spine (AIIS) is a bony eminence on the anterior border of the hip bone, or, more precisely, the wing of the ilium (i.e. the upper lateral parts of the pelvis)." [Wikipedia:Anterior_inferior_iliac_spine] +subset: human_subset +subset: mouse_subset synonym: "anterior inferior iliac spine (volume)" EXACT [FMA:63614] synonym: "anterior inferior spine" RELATED [Wikipedia:Anterior_inferior_iliac_spine] xref: FMA:63614 @@ -329051,6 +343830,8 @@ disjoint_from: UBERON:0013711 {source="lexical"} ! posterior inferior iliac spin id: UBERON:0013710 name: posterior superior iliac spine def: "The posterior border of the ala, shorter than the anterior, also presents two projections separated by a notch, the posterior superior iliac spine and the posterior inferior iliac spine. The posterior superior iliac spine serves for the attachment of the oblique portion of the posterior sacroiliac ligaments and the Multifidus." [Wikipedia:Posterior_superior_iliac_spine] +subset: human_subset +subset: mouse_subset synonym: "posterior superior iliac spine (volume)" EXACT [FMA:49468] synonym: "posterior superior spine of the ilium" RELATED [Wikipedia:Posterior_superior_iliac_spine] xref: FMA:49468 @@ -329062,6 +343843,8 @@ is_a: UBERON:0013713 ! posterior iliac spine id: UBERON:0013711 name: posterior inferior iliac spine def: "The posterior border of the ala, shorter than the anterior, also presents two projections separated by a notch, the posterior superior iliac spine and the posterior inferior iliac spine. The posterior inferior iliac spine corresponds with the posterior extremity of the auricular surface." [Wikipedia:Posterior_inferior_iliac_spine] +subset: human_subset +subset: mouse_subset synonym: "posterior inferior iliac spine (volume)" EXACT [FMA:63615] synonym: "posterior inferior spine of the ilium" RELATED [] xref: FMA:63615 @@ -329072,12 +343855,16 @@ is_a: UBERON:0013713 ! posterior iliac spine [Term] id: UBERON:0013712 name: anterior iliac spine +subset: human_subset +subset: mouse_subset is_a: UBERON:0013707 ! iliac spine disjoint_from: UBERON:0013713 {source="lexical"} ! posterior iliac spine [Term] id: UBERON:0013713 name: posterior iliac spine +subset: human_subset +subset: mouse_subset is_a: UBERON:0013707 ! iliac spine [Term] @@ -329117,6 +343904,8 @@ relationship: part_of UBERON:0013715 ! ilio-marsupialis muscle id: UBERON:0013717 name: superficial inguinal ring def: "The exit of the inguinal canal." [Wikipedia:Superficial_inguinal_ring] +subset: human_subset +subset: mouse_subset synonym: "cutaneous inguinal ring" RELATED [Wikipedia:Superficial_inguinal_ring] synonym: "external abdominal ring" RELATED [Wikipedia:Superficial_inguinal_ring] synonym: "external inguinal ring" RELATED [Wikipedia:Superficial_inguinal_ring] @@ -329136,6 +343925,8 @@ property_value: external_definition "The superficial inguinal ring is an anatomi id: UBERON:0013718 name: dartos muscle def: "The dartos fascia is a fat-free layer of smooth muscular fiber outside the external spermatic fascia but below the skin. It is a continuation of Scarpa's Fascia which is a membranous layer of the subcutaneous tissue in the abdominal wall." [Wikipedia:Dartos] +subset: human_subset +subset: mouse_subset synonym: "dartos muscle" RELATED [Wikipedia:Dartos] synonym: "dartos tunic" RELATED [Wikipedia:Dartos] synonym: "tunica dartos" RELATED OMO:0003011 [Wikipedia:Dartos] @@ -329150,6 +343941,8 @@ property_value: has_relational_adjective "dartoid" xsd:string id: UBERON:0013719 name: dartos muscle of scrotum def: "A dartos muscle that is part of a male reproductive system." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "dartos layer of scrotum" EXACT [] synonym: "dartos tunic" RELATED [Wikipedia:Dartos] xref: FMA:27647 @@ -329169,6 +343962,8 @@ property_value: function_notes "The tunica dartos acts to regulate the temperatu id: UBERON:0013720 name: dartos muscle of labia majora def: "A dartos muscle that is part of a female reproductive system." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "dartos layer of labia" EXACT [] synonym: "dartos muliebris" RELATED [Wikipedia:Dartos] is_a: UBERON:0004120 ! mesoderm-derived structure @@ -329184,6 +343979,8 @@ relationship: part_of UBERON:0004085 ! labium majora id: UBERON:0013721 name: deep inguinal ring def: "The entrance to the inguinal canal." [Wikipedia:Deep_inguinal_ring] +subset: human_subset +subset: mouse_subset synonym: "abdominal inguinal ring" RELATED [Wikipedia:Deep_inguinal_ring] synonym: "annulus inguinalis profundus" RELATED OMO:0003011 [Wikipedia:Deep_inguinal_ring] synonym: "internal abdominal ring" RELATED [Wikipedia:Deep_inguinal_ring] @@ -329202,6 +343999,8 @@ relationship: in_deep_part_of UBERON:0006204 ! inguinal ligament id: UBERON:0013725 name: anterior talofibular ligament def: "The anterior talofibular ligament is a ligament in the ankle. It passes from the anterior margin of the fibular malleolus, anteriorly and medially, to the talus bone, in front of its lateral articular facet. It is one of the lateral ligaments of the ankle and prevents the foot from sliding forward in relation to the shin." [Wikipedia:Anterior_talofibular_ligament] +subset: human_subset +subset: mouse_subset synonym: "ligamentum talofibulare anterius" EXACT OMO:0003011 [Wikipedia:Anterior_talofibular_ligament] xref: FMA:44083 xref: SCTID:242467001 @@ -329213,6 +344012,8 @@ disjoint_from: UBERON:0013726 {source="lexical"} ! posterior talofibular ligamen id: UBERON:0013726 name: posterior talofibular ligament def: "The posterior talofibular ligament, runs almost horizontally from the depression at the medial and back part of the fibular malleolus (lateral malleolus) to a prominent tubercle on the posterior surface of the talus immediately lateral to the groove for the tendon of the flexor hallucis longus." [Wikipedia:Posterior_talofibular_ligament] +subset: human_subset +subset: mouse_subset synonym: "ligamentum talofibulare posterius" EXACT OMO:0003011 [Wikipedia:Posterior_talofibular_ligament] xref: FMA:44084 xref: SCTID:242570004 @@ -329264,6 +344065,8 @@ property_value: external_definition "A sensory structure in the lagenar portion id: UBERON:0013732 name: vestibule of nasal cavity def: "A tube leading from the external naris to the nasal cavity." [AAO:0000984, AAO:EJS] +subset: human_subset +subset: mouse_subset xref: AAO:0000984 is_a: UBERON:0001349 ! externally connecting tube lumen relationship: part_of UBERON:0002268 {source="AAO"} ! olfactory organ @@ -329271,6 +344074,8 @@ relationship: part_of UBERON:0002268 {source="AAO"} ! olfactory organ [Term] id: UBERON:0013733 name: caudal linear nucleus +subset: human_subset +subset: mouse_subset synonym: "CLi" EXACT OMO:0003000 [PMID:21653852] synonym: "posterior linear nucleus" EXACT [OBOL:automatic] xref: FMA:231003 @@ -329282,6 +344087,8 @@ disjoint_from: UBERON:0013734 {source="lexical"} ! rostral linear nucleus id: UBERON:0013734 name: rostral linear nucleus def: "Nucleus of the medial ventral tegmental area, originally identified in the rat but also in cat, monkey and human, comprising an average of 7% volume of the VTA across the different species, with the largest being present in the cat." [NLX:144319] +subset: human_subset +subset: mouse_subset synonym: "anterior linear nucleus" EXACT [OBOL:automatic] synonym: "RLi" EXACT OMO:0003000 [PMID:16292327] synonym: "rostral linear nucleus of the raphe" RELATED [PMID:21653852] @@ -329302,6 +344109,8 @@ property_value: editor_note "Brain Info does not list the linear nuclei as part [Term] id: UBERON:0013736 name: interfascicular linear nucleus +subset: human_subset +subset: mouse_subset synonym: "central linear nucleus" RELATED [] synonym: "IF" RELATED OMO:0003000 [PMID:21653852] synonym: "intermediate linear nucleus" RELATED [FMA:77503] @@ -329314,6 +344123,8 @@ is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0013737 name: paranigral nucleus +subset: human_subset +subset: mouse_subset synonym: "PN" BROAD OMO:0003000 [PMID:21653852] xref: DHBA:12265 xref: FMA:77497 @@ -329328,6 +344139,8 @@ relationship: part_of UBERON:0002691 {source="PMID:21653852"} ! ventral tegmenta id: UBERON:0013738 name: parabrachial pigmental nucleus def: "Nucleus identified in the medial ventral tegmental area that borders the red nucleus and superior cerebellar peduncle dorsally, the medial lemniscus laterally, the subtantia nigra pars compacta and paranigral nucleus ventrally and the rostral linear nucleus and interfascicular nucleus medially. Generally, the largest nucleus in the ventral tegmental area, occupying an average of 50% of the total volume as measured in rat, cat, monkey and human." [NLX:144307] +subset: human_subset +subset: mouse_subset synonym: "parabrachial pigmented nucleus" EXACT [NLX:144307] synonym: "PBP" BROAD OMO:0003000 [PMID:21653852] xref: BAMS:PBP @@ -329345,6 +344158,8 @@ relationship: part_of UBERON:0002691 {source="NIF", source="PMID:21653852"} ! ve id: UBERON:0013739 name: base of crypt of Lieberkuhn def: "The basal portion (further from lumen) of an intestinal crypt. Contains multipotent stem cells. Stem cells in the crypts divide to form daughter cells. One daughter cell from each stem cell division is retained as a stem cell. The other becomes committed to differentiate along one of four pathways to become an enterocyte, enteroendocrine cell, goblet cell or Paneth cell." [http://orcid.org/0000-0002-6601-2165, UBERON:md] +subset: human_subset +subset: mouse_subset synonym: "basal portion of intestinal gland" EXACT [] synonym: "base of intestinal gland" EXACT [] synonym: "base part of epithelium of intestinal gland" EXACT [] @@ -329360,6 +344175,8 @@ property_value: taxon_notes "Clearly defined prolifieration zones found in mamma id: UBERON:0013740 name: wall of crypt of Lieberkuhn def: "The lateral parts of an intestinal crypt, continuous distally with the base and proximally with the intestinal villus epithelium." [http://orcid.org/0000-0002-6601-2165, UBERON:md] +subset: human_subset +subset: mouse_subset synonym: "wall of intestinal gland" EXACT [] synonym: "wall part of epithelium of intestinal gland" EXACT [] is_a: UBERON:0011184 ! epithelium of crypt of Lieberkuhn @@ -329374,6 +344191,8 @@ relationship: part_of UBERON:0001983 ! crypt of Lieberkuhn id: UBERON:0013741 name: base of crypt of Lieberkuhn of large intestine def: "A base of crypt of Lieberkuhn that is part of a large intestine." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001278 ! epithelium of large intestine is_a: UBERON:0013739 ! base of crypt of Lieberkuhn intersection_of: UBERON:0013739 ! base of crypt of Lieberkuhn @@ -329384,6 +344203,8 @@ relationship: part_of UBERON:0000059 ! large intestine id: UBERON:0013742 name: wall of crypt of Lieberkuhn of large intestine def: "A wall of crypt of Lieberkuhn that is part of a large intestine." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001278 ! epithelium of large intestine is_a: UBERON:0013740 ! wall of crypt of Lieberkuhn intersection_of: UBERON:0013740 ! wall of crypt of Lieberkuhn @@ -329394,6 +344215,8 @@ relationship: part_of UBERON:0000059 ! large intestine id: UBERON:0013743 name: base of crypt of Lieberkuhn of small intestine def: "The basal portion (further from lumen) of a intestinal crypt that is located in the small intestine." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001902 ! epithelium of small intestine is_a: UBERON:0013739 ! base of crypt of Lieberkuhn intersection_of: UBERON:0013739 ! base of crypt of Lieberkuhn @@ -329404,6 +344227,8 @@ relationship: part_of UBERON:0002108 ! small intestine id: UBERON:0013744 name: wall of crypt of Lieberkuhn of small intestine def: "The lateral parts of an intestinal crypt that is located in the small intestine, continuous distally with the base and proximally with the intestinal villus epithelium." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001902 ! epithelium of small intestine is_a: UBERON:0013740 ! wall of crypt of Lieberkuhn intersection_of: UBERON:0013740 ! wall of crypt of Lieberkuhn @@ -329415,6 +344240,8 @@ id: UBERON:0013745 name: zona intermedia of adrenal gland def: "A zone of the adrenal cortex located between the zona glomerulosa and the zona fasciculata." [http://www.endotext.org/adrenal/adrenal1/adrenal1.html] comment: currently postulated to be a site of initiation of adrenocyte proliferation and differentiation and a zone containing the adrenal cortical stem cells. Present in some rat species. +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "zona intermedia" EXACT [] synonym: "zona intermedia of suprarenal gland" EXACT [] @@ -329425,6 +344252,8 @@ relationship: part_of UBERON:0001235 {source="cjm"} ! adrenal cortex id: UBERON:0013746 name: basibranchial element def: "Endochondral element that is ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton." [https://github.com/obophenotype/uberon/issues/205, TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "basibranchial" EXACT [ZFA:0000170] synonym: "basibranchials" EXACT OMO:0003004 [ZFA:0000170] synonym: "copula 1" RELATED [] @@ -329437,6 +344266,8 @@ property_value: external_definition "Median ventral cartilage or bony element at id: UBERON:0013747 name: basibranchial cartilage def: "A basibranchial element that is cartilage. Basibranchial elements are ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton." [http://orcid.org/0000-0002-6601-2165, TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0013746 ! basibranchial element intersection_of: UBERON:0013746 ! basibranchial element @@ -329447,6 +344278,8 @@ relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue id: UBERON:0013748 name: ulnar metaphysis def: "A metaphysis that is part of a ulna." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "metaphysis of ulna" EXACT [FMA:33767] xref: FMA:33767 @@ -329461,6 +344294,8 @@ relationship: part_of UBERON:0001424 ! ulna id: UBERON:0013749 name: metaphysis of humerus def: "A metaphysis that is part of a metaphysis." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "diaphyseal end of humerus" EXACT [FMA:32830] synonym: "humeral metaphysis" EXACT [FMA:32830] @@ -329475,6 +344310,8 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:0013750 name: metaphysis of tibia def: "A metaphysis that is part of a tibia." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "tibial metaphysis" EXACT [FMA:33135] xref: EMAPA:37772 {source="MA:th"} @@ -329490,6 +344327,8 @@ relationship: part_of UBERON:0000979 ! tibia id: UBERON:0013751 name: metaphysis of radius def: "A metaphysis that is part of a radius bone." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "radial metaphysis" EXACT [FMA:33789] xref: FMA:33789 @@ -329503,6 +344342,8 @@ relationship: part_of UBERON:0001423 ! radius bone id: UBERON:0013752 name: diaphysis of metacarpal bone def: "A diaphysis that is part of a metacarpal bone." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "body of metacarpal" EXACT [FMA:33804] synonym: "corpus ossis metacarpi" EXACT [FMA:TA] synonym: "metacarpal bone diaphysis" EXACT [FMA:33804] @@ -329519,6 +344360,8 @@ relationship: part_of UBERON:0002374 ! metacarpal bone id: UBERON:0013753 name: distal epiphysis of metacarpal bone def: "A distal epiphysis that is part of a metacarpal bone." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "caput ossis metacarpi" EXACT [FMA:TA] synonym: "distal end of metacarpal bone" EXACT [FMA:33798] @@ -329535,6 +344378,8 @@ relationship: part_of UBERON:0002374 ! metacarpal bone id: UBERON:0013754 name: integumentary system layer def: "An organ component layer that is part of a integumental system." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "layer of skin" NARROW [] synonym: "skin layer" NARROW [] @@ -329548,6 +344393,8 @@ relationship: part_of UBERON:0002416 ! integumental system id: UBERON:0013755 name: arterial blood def: "A blood that is part of a artery." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "arterial blood" EXACT [FMA:83066] synonym: "blood in artery" EXACT [FMA:83066] @@ -329563,6 +344410,8 @@ relationship: located_in UBERON:0001637 ! artery id: UBERON:0013756 name: venous blood def: "A blood that is part of a vein." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood in vein" EXACT [FMA:83067] synonym: "portion of venous blood" EXACT [FMA:83067] synonym: "venous blood" EXACT [FMA:83067] @@ -329577,6 +344426,8 @@ relationship: located_in UBERON:0001638 ! vein id: UBERON:0013757 name: capillary blood def: "A blood that is part of a capillary." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "blood in capillary" EXACT [] synonym: "portion of blood in capillary" EXACT [FMA:263901] synonym: "portion of capillary blood" EXACT [] @@ -329591,6 +344442,8 @@ relationship: located_in UBERON:0001982 ! capillary id: UBERON:0013758 name: cervical os def: "One of two openings in the uterine cervix." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "cervical opening" RELATED [] synonym: "uterine cervix opening" RELATED [] xref: FMA:20422 @@ -329604,6 +344457,8 @@ relationship: part_of UBERON:0000002 ! uterine cervix id: UBERON:0013759 name: internal cervical os def: "Opening of uterine cervix into the body of the uterus." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "internal orifice" RELATED [Wikipedia:Internal_orifice_of_the_uterus] synonym: "internal os" RELATED [FMA:17747, Wikipedia:Internal_orifice_of_the_uterus] xref: FMA:17747 @@ -329620,6 +344475,8 @@ property_value: external_definition "The internal orifice of the uterus (or inte id: UBERON:0013760 name: external cervical os def: "Opening of uterine cervix into the vagina." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "external os" RELATED [Wikipedia:External_orifice_of_the_uterus] synonym: "external os of uterus" EXACT [FMA:76836] synonym: "ostium of uterus" RELATED [Wikipedia:External_orifice_of_the_uterus] @@ -329644,6 +344501,8 @@ id: UBERON:0013761 name: cervical cavity def: "The cavity formed by the walls of the cervix." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "canal of the cervix" RELATED [Wikipedia:Canal_of_the_cervix] synonym: "cavity of cervix" RELATED [BTO:0002249] synonym: "cervical canal" RELATED [Wikipedia:Canal_of_the_cervix] @@ -329671,6 +344530,8 @@ is_obsolete: true id: UBERON:0013764 name: common crus of semicircular duct def: "A nonampullary end of the superior or posterior semicircular ducts." [http://www.medilexicon.com/medicaldictionary.php?s=common+membranous+limb+of+semicircular+ducts] +subset: human_subset +subset: mouse_subset synonym: "common crus" BROAD [] synonym: "common membranous limb of membranous semicircular ducts" EXACT [] synonym: "common membranous limb of semicircular ducts" EXACT [FMA:71881] @@ -329688,6 +344549,8 @@ id: UBERON:0013765 name: digestive system element def: "Any of the organs or elements that are part of the digestive system. Examples: tongue, esophagus, spleen, crop, lunge feeding organ, tooth elements." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "digestive organ" EXACT [] synonym: "digestive system organ" EXACT [] @@ -329702,6 +344565,8 @@ relationship: part_of UBERON:0001007 ! digestive system id: UBERON:0013766 name: epicanthal fold def: "A fold of skin of the upper eyelid that partially covers the inner corner of the eye." [MGI:smb, VT:0006168] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "epicanthic fold" EXACT [] synonym: "epicanthus" EXACT [] @@ -329721,6 +344586,8 @@ id: UBERON:0013767 name: frontal process of maxilla def: "A plate of bone from the maxilla that that projects upward, medialward, and backward, by the side of the nose, forming part of its lateral boundary[WP,modified]." [Wikipedia:Frontal_process_of_maxilla] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "frontal appendage of maxilla" RELATED [FMA:52894] synonym: "frontal process of the maxilla" RELATED [Wikipedia:Frontal_process_of_maxilla] synonym: "nasal process of maxilla" RELATED [Wikipedia:Frontal_process_of_maxilla] @@ -329741,6 +344608,8 @@ name: great vessel of heart def: "Great vessels is a term used to refer collectively to the large vessels that bring blood to and from the heart." [Wikipedia:Great_vessels] comment: Groupings may vary - typically pulmonary vessels and aorta and vena cavae subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "great vessel" BROAD [] synonym: "great vessel of thorax" EXACT [] xref: EMAPA:36460 @@ -329752,6 +344621,8 @@ is_a: UBERON:0001981 ! blood vessel id: UBERON:0013769 name: uterine lumen def: "An organ cavity that is part of a uterus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cavity of uterus" EXACT [FMA:17745] synonym: "uterine cavity" EXACT [FMA:17745] synonym: "uterine space" EXACT [] @@ -329766,6 +344637,8 @@ relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0013770 name: intermammary cleft +subset: human_subset +subset: mouse_subset synonym: "intermammary cleavage" RELATED [] synonym: "intermammary sulcus" RELATED [] xref: FMA:55264 @@ -329777,6 +344650,8 @@ relationship: part_of UBERON:0002100 ! trunk id: UBERON:0013771 name: line connecting laterally paired nipples def: "Line across midline connecting a left and right nipples." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "intermammary line" EXACT [] is_a: UBERON:0006800 ! anatomical line intersection_of: UBERON:0006800 ! anatomical line @@ -329793,6 +344668,8 @@ property_value: taxon_notes "In mammals with multiple pairs of nipples, this lin id: UBERON:0013772 name: left nipple def: "A nipple that is in_the_left_side_of a body proper." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:223695 is_a: UBERON:0002030 ! nipple @@ -329808,6 +344685,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0013773 name: right nipple def: "A nipple that is in_the_right_side_of a body proper." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:223693 is_a: UBERON:0002030 ! nipple @@ -329823,6 +344702,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0013774 name: diaphysis of metatarsal bone def: "A diaphysis that is part of a metatarsal bone." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "diaphysis of metatarsal" EXACT [] synonym: "metatarsal bone diaphysis" EXACT [FMA:33826] @@ -329839,6 +344720,8 @@ relationship: part_of UBERON:0001448 ! metatarsal bone id: UBERON:0013776 name: skin of palmar/plantar part of autopod def: "A zone of skin that is part of a palmar/plantar part of autopod." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015790 ! autopod skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0008837 ! palmar/plantar part of autopod @@ -329848,6 +344731,8 @@ relationship: part_of UBERON:0008837 ! palmar/plantar part of autopod id: UBERON:0013777 name: skin of palm of manus def: "A zone of skin that is part of a palmar part of manus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "palmar skin of hand" EXACT [FMA:38301] synonym: "skin of palmar area of hand" EXACT [] @@ -329864,6 +344749,8 @@ relationship: part_of UBERON:0008878 ! palmar part of manus id: UBERON:0013778 name: skin of sole of pes def: "A zone of skin that is part of a skin of pes." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "plantar skin of foot" EXACT [FMA:37849] synonym: "skin of plantar part of foot" EXACT [FMA:37849] @@ -329880,6 +344767,8 @@ relationship: part_of UBERON:0008338 ! plantar part of pes id: UBERON:0014169 name: nigrostriatal tract def: "The term nigrostriatal fibers refers to a dopaminergic fiber pathway connecting the substantia nigra with the striatum. It is not readily distinguished in myelin-stained cross-sections (Carpenter-83)." [BIRNLEX:4107] +subset: human_subset +subset: mouse_subset synonym: "comb bundle" EXACT [BIRNLEX:4107] synonym: "comb bundle" RELATED [BIRNLEX:4107] synonym: "nigrostriatal bundle" EXACT [BIRNLEX:4107] @@ -329904,6 +344793,8 @@ property_value: editor_note "todo - connect this to dopamine related terms" xsd: id: UBERON:0014277 name: piriform cortex layer 1 def: "Most superficial of 3 cytoarchitecturally defined layers of the piriform cortex, characterized by few neuronal cell bodies. It has been divided into a superficial part and a deep part." [NLXANAT:091003] +subset: human_subset +subset: mouse_subset synonym: "layer 1 of piriform cortex" EXACT [NLXANAT:091003] synonym: "layer 1 of piriform cortex" RELATED [NLXANAT:091003] synonym: "piriform cortex layer 1" EXACT [NLXANAT:091003] @@ -329922,6 +344813,8 @@ relationship: part_of UBERON:0004725 {source="NIFSTD"} ! piriform cortex id: UBERON:0014280 name: piriform cortex layer 2 def: "Middle of three cytoarchitecturally defined layers of the piriform cortex characterized by a compact layer of cell bodies. It can be divided into a superficial part and a more densely packed deep part." [NLXANAT:091006] +subset: human_subset +subset: mouse_subset synonym: "layer 2 of piriform cortex" EXACT [NLXANAT:091006] synonym: "layer 2 of piriform cortex" RELATED [NLXANAT:091006] synonym: "layer II of piriform cortex" EXACT [NLXANAT:091006] @@ -329941,6 +344834,8 @@ relationship: part_of UBERON:0004725 {source="NIFSTD"} ! piriform cortex id: UBERON:0014283 name: piriform cortex layer 3 def: "Deepest of 3 cytoarchitecturally defined layers of the piriform cortex characterized by a moderately high density of pyramidal cells and large numbers of basal dendrites descending from pyramidal cells in layer 2." [NLXANAT:091009] +subset: human_subset +subset: mouse_subset synonym: "layer 3 of piriform cortex" EXACT [NLXANAT:091009] synonym: "layer 3 of piriform cortex" RELATED [NLXANAT:091009] synonym: "piriform cortex layer 3" EXACT [NLXANAT:091009] @@ -329955,6 +344850,8 @@ relationship: part_of UBERON:0004725 {source="NIFSTD"} ! piriform cortex id: UBERON:0014284 name: endopiriform nucleus def: "An elongated nucleus consisting largely of multipolar spiny cells lying deep to the piriform cortex. \nAccording to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, (Ed.), Academic Press, San Diego), it is part of the claustrum." [NLXANAT:091033] +subset: human_subset +subset: mouse_subset synonym: "endopiriform nucleus" EXACT [NLXANAT:091033] synonym: "layer 4 of piriform cortex" EXACT [NLXANAT:091033] synonym: "layer 4 of piriform cortex" RELATED [NLXANAT:091033] @@ -329974,6 +344871,8 @@ relationship: part_of UBERON:0002023 {source="NIFSTD"} ! claustrum of brain [Term] id: UBERON:0014286 name: dorsal cap of Kooy +subset: human_subset +subset: mouse_subset synonym: "dorsal cap of kooy" EXACT [NLXANAT:100307] xref: NLXANAT:100307 is_a: UBERON:0002616 ! regional part of brain @@ -329983,6 +344882,8 @@ relationship: part_of UBERON:0002127 {source="NIFSTD"} ! inferior olivary comple id: UBERON:0014287 name: medial accessory olive def: "Regional part of the inferior olivary complex." [NLXANAT:100309] +subset: human_subset +subset: mouse_subset synonym: "MAO" EXACT [NLXANAT:100309] synonym: "medial accessory olive" EXACT [NLXANAT:100309] xref: BAMS:IOma @@ -329995,6 +344896,8 @@ relationship: part_of UBERON:0002127 {source="NIFSTD"} ! inferior olivary comple id: UBERON:0014370 name: extrastriate cortex def: "A group of cortical areas related by direct or indirect connectivity to the striate area 17 and functionally involved primarily in vision. They include the parastriate area 18, the peristriate area 19 and adjacent areas in the parietal lobe and temporal lobe (Adapted from BrainInfo and Zilles-1990)." [NLXANAT:200905010] +subset: human_subset +subset: mouse_subset synonym: "extrastriate areas" EXACT [NLXANAT:200905010] synonym: "extrastriate areas" RELATED [NLXANAT:200905010] synonym: "extrastriate cortex" EXACT [NLXANAT:200905010] @@ -330014,6 +344917,8 @@ id: UBERON:0014371 name: future telencephalon def: "Embryonic structure that gives rise to the telencephalon." [ZFA:0000571, ZFA:curator] comment: paired anteriolateral division of the embryonic prosencephalon plus the lamina terminalis from which the olfactory lobes, cerebral cortex, and subcortical nuclei are derived[MP] +subset: human_subset +subset: mouse_subset synonym: "presumptive telencephalon" EXACT [ZFA:0000571] xref: EHDAA2:0004424 xref: EMAPA:36024 @@ -330030,6 +344935,8 @@ relationship: part_of UBERON:0006240 ! future forebrain id: UBERON:0014372 name: fibroelastic membrane of larynx def: "A layer of fibrous and elastic fibers, taking the place of the submucosa in the larynx. It is divided by the laryngeal ventricle into two parts: the quadrangular membrane superiorly and the conus elasticus inferiorly." [http://www.medilexicon.com/medicaldictionary.php?t=53910] +subset: human_subset +subset: mouse_subset synonym: "fibro-elastic membrane of larynx" EXACT [FMA:55239] synonym: "membrana fibroelastica laryngis" EXACT OMO:0003011 [http://www.medilexicon.com/medicaldictionary.php?t=53910] xref: FMA:55239 @@ -330044,6 +344951,8 @@ name: embryoid body def: "Embryoid bodies (EBs) are three-dimensional aggregates of pluripotent stem cells." [EFO:0004988, https://github.com/obophenotype/uberon/issues/245] comment: EDITOR_NOTE in future this class may be ceded to another ontology if it falls outside the scope of in-vivo, non-pathological biology subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "embryonic body" RELATED [Wikipedia:Embryoid_body] xref: BTO:0001718 xref: EFO:0004988 @@ -330057,6 +344966,8 @@ property_value: external_definition "Embryoid bodies are structures resembling e id: UBERON:0014375 name: intrinsic muscle of manus def: "Any of the intrinsic muscles of the manus (hand)." [http://medical-dictionary.thefreedictionary.com/intrinsic+muscles] +subset: human_subset +subset: mouse_subset synonym: "intrinsic hand muscle" EXACT [] synonym: "intrinsic muscle of hand" EXACT [FMA:42380] xref: FMA:42380 @@ -330072,6 +344983,8 @@ relationship: part_of UBERON:0002398 ! manus id: UBERON:0014376 name: thenar muscle def: "Any of the muscles of the thenar eminence, a raised fleshy area on the palm of the hand near the base of the thumb." [http://medical-dictionary.thefreedictionary.com/Thenar+muscle] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "thenar compartment" RELATED [Wikipedia:Thenar_eminence] synonym: "thenar eminence" RELATED [Wikipedia:Thenar_eminence] @@ -330088,6 +345001,8 @@ id: UBERON:0014377 name: hypothenar muscle def: "Any of three muscles of the palm that control the motion of the little finger." [https://github.com/obophenotype/uberon/issues/1277, Wikipedia:Hypothenar_eminence] comment: The three muscles are: Abductor digiti minimi Flexor digiti minimi Opponens digiti minimi +subset: human_subset +subset: mouse_subset synonym: "hypothenar" RELATED [Wikipedia:Hypothenar_eminence] synonym: "hypothenar muscle" RELATED [Wikipedia:Hypothenar_eminence] synonym: "hypothenar muscles" RELATED [Wikipedia:Hypothenar_eminence] @@ -330100,6 +345015,8 @@ is_a: UBERON:0014375 {source="FMA"} ! intrinsic muscle of manus id: UBERON:0014378 name: intrinsic muscle of pes def: "Any of the intrinsic muscles of the pes (foot)." [http://medical-dictionary.thefreedictionary.com/intrinsic+muscles] +subset: human_subset +subset: mouse_subset synonym: "intrinsic muscle of foot" EXACT [FMA:65020] xref: FMA:65020 is_a: UBERON:0001498 ! muscle of pes @@ -330113,6 +345030,8 @@ id: UBERON:0014379 name: adductor hallucis muscle def: "The Adductor hallucis (Adductor obliquus hallucis) arises by two headsboblique and transverse and is responsible for adducting the big toe. It is innervated by the lateral plantar nerve. It evolved from the contrahens I muscle as Man's ancestors' thumbs and big toes became opposable." [Wikipedia:Adductor_hallucis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "adductor hallucis" EXACT [FMA:37454] synonym: "adductor hallucis" RELATED [Wikipedia:Adductor_hallucis_muscle] synonym: "adductor transversus hallucis" RELATED [Wikipedia:Adductor_hallucis_muscle] @@ -330128,6 +345047,8 @@ id: UBERON:0014380 name: flexor digitorum brevis muscle def: "The flexor digitorum brevis lies in the middle of the sole of the foot, immediately above the central part of the plantar aponeurosis, with which it is firmly united. Its deep surface is separated from the lateral plantar vessels and nerves by a thin layer of fascia." [Wikipedia:Flexor_digitorum_brevis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "flexor digitorum brevis" EXACT [FMA:37450] synonym: "flexor digitorum brevis" RELATED [Wikipedia:Flexor_digitorum_brevis_muscle] synonym: "flexor digitorum brevis of foot" EXACT [FMA:37450] @@ -330147,6 +345068,8 @@ id: UBERON:0014381 name: whorl of hair def: "A patch of hair growing in the opposite direction of the rest of the hair." [Wikipedia:Hair_whorl] comment: Hair whorls occur in most hairy animals, on the body as well as on the head. Hair whorls, also known as crowns, swirls, trichoglyphs, or cowlicks, can be either clockwise or counterclockwise in direction of growth.[WP] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hair whorl" BROAD [] synonym: "whorl" BROAD [] @@ -330158,6 +345081,8 @@ relationship: fma_set_term FMA:76564 id: UBERON:0014382 name: collection of hairs on head or neck def: "A collection of hairs that is part of a craniocervical region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010164 ! collection of hairs intersection_of: UBERON:0010164 ! collection of hairs intersection_of: part_of UBERON:0007811 ! craniocervical region @@ -330167,6 +345092,8 @@ relationship: part_of UBERON:0007811 ! craniocervical region id: UBERON:0014385 name: aryepiglottic fold def: "The entrance of the larynx is a triangular opening, narrow in front, wide behind, and sloping obliquely downward and backward. It is bounded, in front, by the epiglottis; behind, by the apices of the arytenoid cartilages, the corniculate cartilages, and the interarytenoid notch; and on either side, by a fold of mucous membrane, enclosing ligamentous and muscular fibers, stretched between the side of the epiglottis and the apex of the arytenoid cartilage; this is the aryepiglottic fold, on the posterior part of the margin of which the cuneiform cartilage forms a more or less distinct whitish prominence, the cuneiform tubercle. These folds form the upper borders of the quadrangular membrane." [Wikipedia:Aryepiglottic_fold] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ary-epiglottic fold" EXACT [FMA:55448] synonym: "aryepiglottic folds" RELATED [Wikipedia:Aryepiglottic_fold] @@ -330189,6 +345116,8 @@ relationship: part_of UBERON:0001737 ! larynx id: UBERON:0014386 name: vertebral endplate def: "Either of the the top and bottom portions of the vertebral bodies that interface with the vertebral discs. It is composed of a layer of thickened cancellous bone." [HPO:curators, Wikipedia:Endplates] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "endplate" BROAD [] xref: BTO:0005552 @@ -330202,6 +345131,8 @@ relationship: part_of UBERON:0001075 ! bony vertebral centrum id: UBERON:0014387 name: mesenchyme derived from neural crest def: "Mesenchyme that develops_from the neural crest[Automatically generated definition]." [https://github.com/obophenotype/uberon/issues/248, OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "mesenchyme from neural crest" EXACT [] synonym: "neural crest derived mesenchyme" EXACT [] synonym: "neural crest mesenchyme" EXACT [] @@ -330217,6 +345148,8 @@ relationship: develops_from UBERON:0002342 ! neural crest id: UBERON:0014388 name: kidney collecting duct epithelium def: "The simple cuboidal epithelium lining the lumen of kidney collecting ducts." [MGI:anna, MP:0011843] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "collecting duct of renal tubule epithelium" EXACT [] synonym: "epithelium of collecting duct of renal tubule" EXACT [] @@ -330234,6 +345167,8 @@ property_value: taxon_notes "In mouse, the mature and differentiated CD epitheli id: UBERON:0014389 name: gustatory papilla of tongue def: "A papilla that contain taste buds, including the fungiform, foliate, and circumvallate papillae." [MGI:smb, MP:0006256] +subset: human_subset +subset: mouse_subset synonym: "gustatory papilla" EXACT [] synonym: "gustatory papillae" RELATED OMO:0003004 [] synonym: "taste papilla" EXACT [] @@ -330247,6 +345182,8 @@ relationship: has_part UBERON:0001727 ! taste bud id: UBERON:0014390 name: muscle layer of ileum def: "A muscular coat that is part of a ileum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ileal smooth muscle" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "muscularis externa of ileum" EXACT [FMA:14958] synonym: "muscularis propria of ileum" RELATED [https://orcid.org/0000-0002-6601-2165] @@ -330262,6 +345199,8 @@ relationship: part_of UBERON:0002116 ! ileum id: UBERON:0014391 name: palmar/plantar sweat gland def: "A sweat gland that is part of the skin of the palmar part of the manus or plantar part of the pes." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "palm sweat gland" NARROW [] synonym: "palm/sole sweat gland" RELATED [] synonym: "palmar eccrine sweat gland" NARROW [] @@ -330278,6 +345217,8 @@ property_value: taxon_notes "in mice these are the only sweat glands present" xs id: UBERON:0014392 name: sweat of palm def: "Sweat that is produced by the glands on the palmar and plantar surfaces." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "palm sweat" EXACT [FMA:63084] synonym: "palmar sweat" EXACT [FMA:63084] xref: FMA:63084 @@ -330291,6 +345232,7 @@ property_value: function_notes "serves a purpose of increasing friction on the p id: UBERON:0014393 name: sweat of axilla def: "Sweat that is produced by the glands of the axilla." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset synonym: "axillary sweat" EXACT [FMA:63085] xref: FMA:63085 is_a: UBERON:0001089 ! sweat @@ -330302,6 +345244,8 @@ relationship: produced_by UBERON:0018232 ! axillary sweat gland id: UBERON:0014394 name: uterine fat pad def: "Encapsulated adipose tissue associated with the uterus." [MP:0008900] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "peri-uterine fat pad" RELATED [] synonym: "periuterine fat pad" RELATED [] @@ -330317,6 +345261,8 @@ relationship: part_of UBERON:0000995 ! uterus id: UBERON:0014395 name: proximal mesopodial bone def: "A proximal mesopodial endochondral element that is composed primarily of a bone tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0017750 ! proximal mesopodial endochondral element intersection_of: UBERON:0017750 ! proximal mesopodial endochondral element @@ -330328,6 +345274,8 @@ relationship: develops_from UBERON:0017751 ! proximal mesopodial cartilage eleme id: UBERON:0014396 name: interscapular fat pad def: "Encapsulated adipose tissue located between the scapulae." [MGI:rbabiuk, MGI:smb] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "interscapular fat depot" EXACT [] is_a: UBERON:0003579 ! shoulder connective tissue @@ -330338,6 +345286,8 @@ relationship: part_of UBERON:0001467 ! shoulder id: UBERON:0014397 name: lateral process of malleus def: "A short projection from the base of the manubrium of the malleus, attached firmly to the drum membrane." [http://www.medilexicon.com/medicaldictionary.php?t=72288] +subset: human_subset +subset: mouse_subset synonym: "malleus process brevis" EXACT [MA:0002994] synonym: "process brevis" RELATED [http://medical-dictionary.thefreedictionary.com/processus+brevis] synonym: "processus lateralis (malleus)" EXACT [FMA:52770] @@ -330357,6 +345307,8 @@ relationship: part_of UBERON:0001689 {source="FMA"} ! malleus bone id: UBERON:0014398 name: respiratory muscle def: "Muscle that is part of the respiratory system." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: MESH:D012132 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0003831 ! respiratory system muscle @@ -330371,6 +345323,8 @@ property_value: curator_notes "this class may be merged with 'respiratory system id: UBERON:0014399 name: sinusoidal space def: "An anatomical space that is enclosed by a sinusoid." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lumen of sinusoid" EXACT [FMA:63133] synonym: "sinusoid lumen" EXACT [FMA:63133] xref: FMA:63133 @@ -330384,6 +345338,8 @@ relationship: part_of UBERON:0003909 ! sinusoid id: UBERON:0014400 name: hepatic sinusoidal space def: "A sinusoidal space that is part of a hepatic sinusoid." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lumen of hepatic sinusoid" EXACT [FMA:262090] xref: FMA:262090 is_a: UBERON:0014399 ! sinusoidal space @@ -330395,6 +345351,8 @@ relationship: part_of UBERON:0001281 ! hepatic sinusoid id: UBERON:0014401 name: renal venous blood vessel def: "Any member of the network of tubes that return blood from the renal tissues to the systemic circulation." [MGI:csmith] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "kidney venous blood vessel" EXACT [MA:0002591] synonym: "kidney venous system" RELATED [EMAPA:31450] @@ -330412,6 +345370,8 @@ property_value: external_ontology_notes "we follow MA and MP in distinguishing t id: UBERON:0014402 name: sex-specific anatomical structure def: "A part of the body present only in a specific gender." [AEO:0000174, AEO:JB] +subset: human_subset +subset: mouse_subset synonym: "gender-specific" EXACT [] synonym: "gender-specific anatomical structure" EXACT [AEO:0000174] synonym: "sex-specific" EXACT [] @@ -330426,6 +345386,8 @@ relationship: output_of GO:0007548 ! sex differentiation id: UBERON:0014403 name: male anatomical structure def: "A part of the body present only in males." [AEO:0000175, AEO:JB] +subset: human_subset +subset: mouse_subset synonym: "male-specific" RELATED [WBbt:0005757] synonym: "male-specific structure" EXACT [] xref: AEO:0000175 @@ -330439,6 +345401,8 @@ relationship: part_of UBERON:0003101 ! male organism id: UBERON:0014404 name: female anatomical structure def: "A part of the body present only in females." [AEO:0000176, AEO:JB] +subset: human_subset +subset: mouse_subset xref: AEO:0000176 is_a: UBERON:0014402 ! sex-specific anatomical structure intersection_of: UBERON:0014402 ! sex-specific anatomical structure @@ -330471,6 +345435,8 @@ property_value: external_definition "A crustacean larva in usually the first sta id: UBERON:0014409 name: metacromion def: "A process projecting backward and downward from the acromion of the scapula of some mammals." [http://www.thefreedictionary.com/Metacromion] +subset: human_subset +subset: mouse_subset synonym: "metacromion of scapula" EXACT [] synonym: "metacromion process" EXACT [] synonym: "scapular metacromion" EXACT [] @@ -330480,6 +345446,8 @@ relationship: part_of UBERON:0006849 ! scapula [Term] id: UBERON:0014410 name: fibularis quartus +subset: human_subset +subset: mouse_subset synonym: "fibularis quartus muscle" EXACT [] synonym: "peroneus digiti IV" RELATED [EMAPA:36260] synonym: "peroneus digiti quarti" EXACT [EMAPA:36260] @@ -330496,6 +345464,8 @@ property_value: taxon_notes "variant structure in human" xsd:string {source="PMI id: UBERON:0014411 name: greater sciatic notch def: "On the dorsal border of the wing of the ilium , at it's junction with the shaft is a cut away. This forms the Greater sciatic notch. The sciatic nerve runs over the notch in passage to the hindlimb." [MURDOCH:865] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "greater sacrosciatic notch" EXACT [] synonym: "incisura ischiadica major" EXACT OMO:0003011 [Wikipedia:Greater_sciatic_notch] @@ -330510,6 +345480,8 @@ property_value: external_definition "deep indentation in the posterior border of id: UBERON:0014430 name: sciatic notch def: "Either of two notches on the dorsal border of the hip bone on each side that when closed off by ligaments form the corresponding sciatic foramina." [http://www.merriam-webster.com/medical/sciatic+notch] +subset: human_subset +subset: mouse_subset xref: SCTID:360956007 xref: Wikipedia:Sciatic_notch is_a: UBERON:0004120 ! mesoderm-derived structure @@ -330520,6 +345492,8 @@ relationship: part_of UBERON:0001274 ! ischium id: UBERON:0014436 name: lesser sciatic notch def: "Below the ischial spine is a smaller notch, the lesser sciatic notch; it is smooth, coated in the recent state with cartilage, the surface of which presents two or three ridges corresponding to the subdivisions of the tendon of the Obturator internus, which winds over it. It is converted into a foramen, the lesser sciatic foramen, by the sacrotuberous and sacrospinous ligaments, and transmits the tendon of the Obturator internus, the nerve which supplies that muscle, and the internal pudendal vessels and nerve." [Wikipedia:Lesser_sciatic_notch] +subset: human_subset +subset: mouse_subset synonym: "incisura ischiadica minor" EXACT OMO:0003011 [Wikipedia:Lesser_sciatic_notch] xref: FMA:16911 xref: SCTID:292830001 @@ -330532,6 +345506,8 @@ relationship: conduit_for UBERON:0011048 ! obturator internus id: UBERON:0014437 name: iliac crest def: "Is part of the pelvis on the edge of the wing of the ilium. Round in shape, dorsal to the pubis and ischium. Acts as structrure that muscles can attach too." [MURDOCH:931] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37602 {source="MA:th"} xref: FMA:16914 @@ -330546,6 +345522,8 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:0014438 name: superior pubic ramus def: "The superior pubic ramus is a part of the pubic bone which forms a portion of the obturator foramen. It extends from the body to the median plane where it articulates with its fellow of the opposite side. It is conveniently described in two portions, viz. , a medial flattened part and a narrow lateral prismoid portion." [Wikipedia:Superior_pubic_ramus] +subset: human_subset +subset: mouse_subset synonym: "superior rami of the pubes" RELATED [Wikipedia:Superior_pubic_ramus] synonym: "superior ramus of pubis" EXACT [FMA:16988] synonym: "superior ramus of the pubis" RELATED [Wikipedia:Superior_pubic_ramus] @@ -330558,6 +345536,8 @@ is_a: UBERON:0014444 ! pubic ramus id: UBERON:0014439 name: inferior pubic ramus def: "The inferior pubic ramus is thin and flattened. It passes lateralward and downward from the medial end of the superior ramus; it becomes narrower as it descends and joins with the inferior ramus of the ischium below the obturator foramen." [Wikipedia:Inferior_pubic_ramus] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "inferior rami of the pubes" RELATED [Wikipedia:Inferior_pubic_ramus] synonym: "inferior ramus of pubis" EXACT [FMA:16989] @@ -330571,6 +345551,8 @@ is_a: UBERON:0014444 ! pubic ramus id: UBERON:0014440 name: ischiopubic ramus def: "The ischiopubic ramus is a compound structure consisting of the following two structures: from the pubis, the inferior pubic ramus from the ischium, the inferior ramus of the ischium It serves as part of the origin for the Obturator internus muscle. It also marks a vertex of the anal triangle and the urogenital triangle. The fascia of Colles is attached to its margin." [Wikipedia:Ischiopubic_ramus] +subset: human_subset +subset: mouse_subset synonym: "conjoint ramus" EXACT [FMA:43533] synonym: "ischiopubic rami" RELATED [Wikipedia:Ischiopubic_ramus] synonym: "rami of the pubis and ischium" RELATED [Wikipedia:Ischiopubic_ramus] @@ -330585,6 +345567,8 @@ relationship: part_of UBERON:0001272 {source="FMA"} ! innominate bone [Term] id: UBERON:0014441 name: ischial ramus +subset: human_subset +subset: mouse_subset synonym: "ramus of ischium" EXACT [FMA:17007] synonym: "ramus ossis ischii" EXACT [FMA:17007] synonym: "ramusi ossis ischii" EXACT [FMA:TA] @@ -330598,6 +345582,8 @@ relationship: part_of UBERON:0001274 ! ischium id: UBERON:0014442 name: superior ischial ramus def: "The superior ramus of the ischium (descending ramus) projects downward and backward from the body and presents for examination three surfaces: external, internal, and posterior. The external surface is quadrilateral in shape. It is bounded above by a groove which lodges the tendon of the Obturator externus; below, it is continuous with the inferior ramus; in front it is limited by the posterior margin of the obturator foramen; behind, a prominent margin separates it from the posterior surface. In front of this margin the surface gives origin to the Quadratus femoris, and anterior to this to some of the fibers of origin of the Obturator externus; the lower part of the surface gives origin to part of the Adductor magnus. The internal surface forms part of the bony wall of the lesser pelvis. In front it is limited by the posterior margin of the obturator foramen. Below, it is bounded by a sharp ridge which gives attachment to a falciform prolongation of the sacrotuberous ligament, and, more anteriorly, gives origin to the Transversus perinC&i and Ischiocavernosus. Posteriorly the ramus forms a large swelling, the tuberosity of the ischium." [Wikipedia:Superior_ramus_of_the_ischium] +subset: human_subset +subset: mouse_subset synonym: "superior ramus of ischium" RELATED [] xref: FMA:304318 xref: SCTID:292625002 @@ -330608,6 +345594,8 @@ is_a: UBERON:0014441 ! ischial ramus id: UBERON:0014443 name: inferior ischial ramus def: "The Inferior Ramus of the ischium (ascending ramus) is the thin, flattened part of the ischium, which ascends from the superior ramus, and joins the inferior ramus of the pubisbthe junction being indicated in the adult by a raised line. The outer surface is uneven for the origin of the obturator externus and some of the fibers of the adductor magnus; its inner surface forms part of the anterior wall of the pelvis. Its medial border is thick, rough, slightly everted, forms part of the outlet of the pelvis, and presents two ridges and an intervening space. The ridges are continuous with similar ones on the inferior ramus of the pubis: to the outer is attached the deep layer of the superficial perineal fascia (fascia of Colles), and to the inner the inferior fascia of the urogenital diaphragm. If these two ridges be traced downward, they will be found to join with each other just behind the point of origin of the transversus perinC&i; here the two layers of fascia are continuous behind the posterior border of the muscle. To the intervening space, just in front of the point of junction of the ridges, the transversus perinC&i is attached, and in front of this a portion of the crus penis vel clitoridis and the ischiocavernosus. Its lateral border is thin and sharp, and forms part of the medial margin of the obturator foramen." [Wikipedia:Inferior_ramus_of_the_ischium] +subset: human_subset +subset: mouse_subset synonym: "inferior rami of the pubis" RELATED [Wikipedia:Inferior_ramus_of_the_ischium] synonym: "inferior ramus of ischium" RELATED [] xref: SCTID:361324004 @@ -330617,6 +345605,8 @@ is_a: UBERON:0014441 ! ischial ramus [Term] id: UBERON:0014444 name: pubic ramus +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ramus of pubis" EXACT [] xref: SCTID:182026003 @@ -330631,6 +345621,8 @@ id: UBERON:0014445 name: acetabular fossa def: "The acetabular fossa is the roughened depression in the centre of the acetabulum, surrounded by the lunate acetabular surface and the acetabular notch. The acetabular fossa provides an insertion point for the teres ligaments that secure the femoral head." [MURDOCH:100] comment: It is occupied by the ligament of head of femur[WP] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "fossa acetabularis" EXACT OMO:0003011 [Wikipedia:Acetabular_fossa] synonym: "fossa acetabularis (acetabuli)" EXACT [FMA:17269] @@ -330646,6 +345638,8 @@ relationship: part_of UBERON:0001272 ! innominate bone id: UBERON:0014446 name: acetabular notch def: "The acetabulum presents below a deep notch, the acetabular notch, which is continuous with a circular non-articular depression, the acetabular fossa, at the bottom of the cavity: this depression is perforated by numerous apertures, and lodges a mass of fat. The notch is converted into a foramen by the transverse ligament; through the foramen nutrient vessels and nerves enter the joint; the margins of the notch serve for the attachment of the ligament of the head of the femur." [Wikipedia:Acetabular_notch] +subset: human_subset +subset: mouse_subset xref: FMA:16944 xref: SCTID:289767000 xref: Wikipedia:Acetabular_notch @@ -330679,6 +345673,8 @@ id: UBERON:0014450 name: pretectal nucleus alt_id: UBERON:0002994 def: "A neural nucleus of the pretectal area (between dorsal thalamus and optic tectum) that receives afferents primarily from the retina and the optic tectum and are involved in modulating motor behavior in response to visual input." [https://github.com/obophenotype/uberon/issues/361, ISBN:0471888893] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "nucleus area pretectalis" RELATED OMO:0003011 [NeuroNames:468] synonym: "nucleus of pretectal area" EXACT [FMA:72401] @@ -330710,6 +345706,8 @@ property_value: taxon_notes "in hagfishes, there are two: the pretectal nucleus id: UBERON:0014451 name: tongue taste bud def: "A taste bud that is located on the tongue, situated on a gustatory papilla." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "gustatory papilla taste bud" EXACT [] synonym: "gustatory papillae taste bud" EXACT [MP:0006260] @@ -330724,6 +345722,8 @@ relationship: part_of UBERON:0014389 ! gustatory papilla of tongue id: UBERON:0014452 name: gustatory epithelium of tongue def: "A gustatory epithelium that is part of a tongue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lingual gustatory epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:4099 xref: UMLS:C1179150 {source="BIRNLEX:4099"} @@ -330737,6 +345737,8 @@ relationship: part_of UBERON:0001723 ! tongue id: UBERON:0014453 name: gustatory epithelium of palate def: "A gustatory epithelium that is part of a roof of mouth." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "palatal gustatory epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0002424 ! oral epithelium is_a: UBERON:0002926 ! gustatory epithelium @@ -330749,6 +345751,8 @@ relationship: part_of UBERON:0007375 ! roof of mouth id: UBERON:0014454 name: visceral abdominal adipose tissue def: "Subcutaneous adipose tissue that is located in the peritoneal cavity." [CALOHA:paula, http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/259, MGI:csmith] +subset: human_subset +subset: mouse_subset synonym: "abdominal fat" RELATED [BTO:0004041] synonym: "intra-abdominal adipose tissue" RELATED [] synonym: "intra-abdominal fat" RELATED [BTO:0004041] @@ -330775,6 +345779,8 @@ property_value: external_definition "Adipose tissue located inside the peritonea id: UBERON:0014455 name: subcutaneous abdominal adipose tissue def: "Subcutaneous adipose tissue that is located in the abdominal region." [CALOHA:paula, http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/259, MGI:csmith] +subset: human_subset +subset: mouse_subset synonym: "abdominal subcutaneous adipose tissue" EXACT [] synonym: "subcutaneous abdominal fat" EXACT [] synonym: "subcutaneous fat of abdominal region" EXACT [] @@ -330794,6 +345800,8 @@ property_value: dc:contributor https://github.com/paulacalipho id: UBERON:0014456 name: extraperitoneal space def: "The extraperitoneal space is the portion of the abdomen and pelvis which does not lie within peritoneum. It includes: Retroperitoneal space Retropubic space The space in the pelvis is divided into the following components: prevesical space perivesical space perirectal space." [Wikipedia:Extraperitoneal_space] +subset: human_subset +subset: mouse_subset synonym: "spatium extraperitoneale" EXACT OMO:0003011 [Wikipedia:Extraperitoneal_space] xref: FMA:14730 xref: NCIT:C92208 @@ -330821,6 +345829,8 @@ consider: XAO:0000227 id: UBERON:0014458 name: female bulbospongiosus muscle def: "A bulbospongiosus muscle that is part of a female reproductive system." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "bulbospongiosus of female" EXACT [] synonym: "female bulbospongiosus" EXACT [] xref: SCTID:244974000 @@ -330874,6 +345884,8 @@ id: UBERON:0014463 name: cardiac ganglion def: "Any of the parasympathetic ganglia of the cardiac plexus between the arch of the aorta and the bifurcation of the pulmonary artery." [ISBN:0-683-40008-8, MP:0003685] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cardiac ganglia" RELATED OMO:0003004 [] synonym: "cardiac ganglia set" EXACT [FMA:77582] synonym: "cardiac ganglion of Wrisberg" EXACT [] @@ -330895,6 +345907,8 @@ property_value: external_definition "Any of the parasympathetic ganglia of the c id: UBERON:0014464 name: renal fat pad def: "Encapsulated adipose tissue associated with the kidney." [MP:0008902] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "perirenal fat pad" RELATED [MP:0008902] is_a: UBERON:0003427 ! abdominal fat pad @@ -330906,6 +345920,8 @@ relationship: part_of UBERON:0002113 ! kidney id: UBERON:0014465 name: antorbital fenestra def: "An antorbital fenestra is an opening in the skull, in front of the eye sockets. This skull formation first appeared in archosaurs during the Triassic Period. Living birds today possess antorbital fenestrae, but the feature has been lost in modern crocodilians. In some archosaur species, the opening has closed but its location is still marked by a depression, or fossa, on the surface of the skull. This is called an antorbital fossa." [Wikipedia:Antorbital_fenestra] +subset: human_subset +subset: mouse_subset synonym: "antorbital fenestrae" RELATED OMO:0003004 [] is_a: UBERON:0004705 ! fenestra relationship: part_of UBERON:0003129 ! skull @@ -330913,6 +345929,8 @@ relationship: part_of UBERON:0003129 ! skull [Term] id: UBERON:0014466 name: subarachnoid fissure +subset: human_subset +subset: mouse_subset xref: FMA:75136 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000315 ! subarachnoid space @@ -330921,6 +345939,8 @@ relationship: part_of UBERON:0000315 ! subarachnoid space id: UBERON:0014468 name: ansoparamedian fissure of cerebellum def: "Fissure between cerebellar hemispheric lobules VIIBi and VIIBii." [NLXANAT:20081256] +subset: human_subset +subset: mouse_subset synonym: "ansoparamedian fissure" EXACT [NLXANAT:20081256] synonym: "fissura ansoparamedianis" EXACT [FMA:TA] synonym: "fissura lunogracilis" EXACT OMO:0003011 [FMA:75137, FMA:TA] @@ -330942,6 +345962,8 @@ relationship: part_of UBERON:0002037 ! cerebellum id: UBERON:0014471 name: primary fissure of cerebellum def: "The monticulus of the cerebellum is divided by the primary fissure (or preclival fissure) into an anterior, raised part, the culmen or summit, and a posterior sloped part, the clivus; the quadrangular lobule is similarly divided." [Wikipedia:Primary_fissure_of_cerebellum] +subset: human_subset +subset: mouse_subset synonym: "fissura preclivalis" EXACT [FMA:TA] synonym: "fissura prima" EXACT OMO:0003011 [FMA:83729, FMA:TA] synonym: "fissura prima cerebelli" EXACT OMO:0003011 [FMA:83729, FMA:TA] @@ -330966,6 +345988,8 @@ relationship: part_of UBERON:0002037 ! cerebellum id: UBERON:0014473 name: precentral fissure of cerebellum def: "Fissure between cerebellar lobules I and II." [NLXANAT:20081251] +subset: human_subset +subset: mouse_subset synonym: "fissura postlingualis cerebelli" EXACT [FMA:TA] synonym: "fissura praecentralis" EXACT OMO:0003011 [FMA:83731, FMA:TA] synonym: "fissura precentralis cerebelli" EXACT OMO:0003011 [FMA:83731, FMA:TA] @@ -330989,6 +346013,8 @@ property_value: editor_note "compare with precentral sulcus" xsd:string [Term] id: UBERON:0014474 name: postcentral fissure of cerebellum +subset: human_subset +subset: mouse_subset synonym: "fissura postcentralis cerebelli" EXACT [FMA:TA] synonym: "fissura praeculminata" EXACT OMO:0003011 [FMA:83732, FMA:TA] synonym: "post-central fissure of cerebellum" EXACT [FMA:83732] @@ -331016,6 +346042,8 @@ id: UBERON:0014477 name: thoracic skeleton def: "Subdivision of skeletal system that consists of all skeletal elements in the thoracic region of the trunk. In most vertebrates this is the rib cage and sternum." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Rib_cage] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "skeleton of thorax" EXACT [] synonym: "thoracic part of axial skeleton" EXACT [] @@ -331032,6 +346060,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0014478 name: rib skeletal system def: "Subdivision of skeletal system that consists of all ribs and rib joints in an organism. In many vertebrates this consists of the combination of the rib cage and all rib joints, but some vertebrates have ribs outside the thoracic rib cage." [https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "rib series" EXACT [TAO:0002100] synonym: "rib skeleton" RELATED [] synonym: "set of all ribs" RELATED [FMA:265719] @@ -331054,8 +346084,8 @@ xref: SCTID:41253007 is_a: UBERON:0000026 ! appendage relationship: capable_of_part_of GO:0042048 {source="Wikipedia"} ! olfactory behavior relationship: capable_of_part_of GO:0071625 {source="Wikipedia"} ! vocalization behavior -relationship: derived_from_ancestral_fusion_of UBERON:0001834 ! upper lip -relationship: derived_from_ancestral_fusion_of UBERON:0007827 ! external nose +relationship: has_fused_element UBERON:0001834 ! upper lip +relationship: has_fused_element UBERON:0007827 ! external nose relationship: in_taxon NCBITaxon:9779 ! Proboscidea relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0001004 ! respiratory system @@ -331073,6 +346103,8 @@ is_a: UBERON:0000022 ! feather id: UBERON:0014481 name: sex skin def: "An area of skin adjacent to the female external genitals of various lower primates that undergo marked alteration in turgidity and often in color during estrus." [http://www.merriam-webster.com/dictionary/sex%20skin] +subset: human_subset +subset: mouse_subset xref: SCTID:113175000 is_a: UBERON:0000014 ! zone of skin relationship: adjacent_to UBERON:0005056 ! external female genitalia @@ -331082,6 +346114,8 @@ relationship: capable_of_part_of GO:0060209 ! estrus id: UBERON:0014482 name: ischial callosity def: "An area of hardened, leathery skin on either side of the base of the tail on the rump." [http://pin.primate.wisc.edu/factsheets/glossary] +subset: human_subset +subset: mouse_subset is_a: UBERON:8480024 ! skin of sacral region relationship: part_of UBERON:0005473 ! sacral region @@ -331089,6 +346123,8 @@ relationship: part_of UBERON:0005473 ! sacral region id: UBERON:0014483 name: distal phalanx of digit 1 def: "A distal phalanx that is part of a digit 1 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit 1 distal phalanx" EXACT [PHENOSCAPE:wd] synonym: "digit I P3" RELATED [] synonym: "distal phalanx of digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -331104,6 +346140,8 @@ relationship: part_of UBERON:5106048 ! digit 1 digitopodial skeleton id: UBERON:0014484 name: distal phalanx of digit 2 def: "A distal phalanx that is part of a digit 2 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "2nd digit distal phalanx" EXACT [] synonym: "digit 2 distal phalanx" EXACT [PHENOSCAPE:wd] synonym: "digit II P3" RELATED [] @@ -331123,6 +346161,8 @@ relationship: part_of UBERON:5106049 ! digit 2 digitopodial skeleton id: UBERON:0014485 name: distal phalanx of digit 3 def: "A distal phalanx that is part of a digit 3. In odd-toes ungulates (Perissodactyla e.g. horses) this is called the coffin bone. In even-toed ungulates (Artiodactyla e.g cattle) this is associated with the medial claw." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Coffin_bone, Wikipedia:Equine_forelimb_anatomy#Distal_phalanx] +subset: human_subset +subset: mouse_subset synonym: "3rd digit distal phalanx" EXACT [] synonym: "coffin bone" NARROW [NCBITaxon:9787] synonym: "digit 3 distal phalanx" EXACT [PHENOSCAPE:wd] @@ -331154,6 +346194,8 @@ property_value: taxon_notes "the bottommost bone in the equine leg and is encase id: UBERON:0014486 name: distal phalanx of digit 4 def: "A distal phalanx that is part of a digit 4 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "4th digit distal phalanx" EXACT [] synonym: "digit 4 distal phalanx" EXACT [PHENOSCAPE:wd] synonym: "digit IV P3" RELATED [] @@ -331178,6 +346220,8 @@ relationship: part_of UBERON:5106051 ! digit 4 digitopodial skeleton id: UBERON:0014487 name: distal phalanx of digit 5 def: "A distal phalanx that is part of a digit 5 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "5th digit distal phalanx" EXACT [] synonym: "digit 5 distal phalanx" EXACT [PHENOSCAPE:wd] synonym: "digit V P3" RELATED [] @@ -331197,6 +346241,8 @@ relationship: part_of UBERON:5106052 ! digit 5 digitopodial skeleton id: UBERON:0014488 name: middle phalanx of digit 2 def: "A middle phalanx that is part of a digit 2 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "2nd digit intermediate phalanx" EXACT [] synonym: "2nd digit middle phalanx" EXACT [] synonym: "2nd digit of intermediate phalanx" EXACT [] @@ -331224,6 +346270,8 @@ relationship: part_of UBERON:5106049 ! digit 2 digitopodial skeleton id: UBERON:0014489 name: middle phalanx of digit 3 def: "A middle phalanx that is part of a digit 3 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "3rd digit intermediate phalanx" EXACT [] synonym: "3rd digit middle phalanx" EXACT [] synonym: "3rd digit of intermediate phalanx" EXACT [] @@ -331252,6 +346300,8 @@ relationship: part_of UBERON:5106050 ! digit 3 digitopodial skeleton id: UBERON:0014490 name: middle phalanx of digit 4 def: "A middle phalanx that is part of a digit 4 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "4th digit intermediate phalanx" EXACT [] synonym: "4th digit middle phalanx" EXACT [] synonym: "4th digit of intermediate phalanx" EXACT [] @@ -331280,6 +346330,8 @@ relationship: part_of UBERON:5106051 ! digit 4 digitopodial skeleton id: UBERON:0014491 name: middle phalanx of digit 5 def: "A middle phalanx that is part of a digit 5 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "5th digit intermediate phalanx" EXACT [] synonym: "5th digit middle phalanx" EXACT [] synonym: "5th digit of intermediate phalanx" EXACT [] @@ -331307,6 +346359,8 @@ relationship: part_of UBERON:5106052 ! digit 5 digitopodial skeleton id: UBERON:0014501 name: proximal phalanx of digit 1 def: "A proximal phalanx that is part of a autopod digit 1 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit I P1" EXACT [] synonym: "digit I-1" EXACT [PHENOSCAPE:wd] synonym: "first proximal phalanx of autopod" EXACT [] @@ -331322,6 +346376,8 @@ relationship: part_of UBERON:5106048 ! digit 1 digitopodial skeleton id: UBERON:0014502 name: proximal phalanx of digit 2 def: "A proximal phalanx that is part of a autopod digit 2 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "2nd digit of autopod proximal phalanx" EXACT [] synonym: "2nd digit proximal phalanx" EXACT [] synonym: "autopod digit 2 proximal phalanx" EXACT [] @@ -331345,6 +346401,8 @@ relationship: part_of UBERON:5106049 ! digit 2 digitopodial skeleton id: UBERON:0014503 name: proximal phalanx of digit 3 def: "A proximal phalanx that is part of a autopod digit 3 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "3rd digit of autopod proximal phalanx" EXACT [] synonym: "3rd digit proximal phalanx" EXACT [] synonym: "autopod digit 3 proximal phalanx" EXACT [] @@ -331369,6 +346427,8 @@ relationship: part_of UBERON:5106050 ! digit 3 digitopodial skeleton id: UBERON:0014504 name: proximal phalanx of digit 4 def: "A proximal phalanx that is part of a autopod digit 4 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "4th digit of autopod proximal phalanx" EXACT [] synonym: "4th digit proximal phalanx" EXACT [] synonym: "autopod digit 4 proximal phalanx" EXACT [] @@ -331392,6 +346452,8 @@ relationship: part_of UBERON:5106051 ! digit 4 digitopodial skeleton id: UBERON:0014505 name: proximal phalanx of digit 5 def: "A proximal phalanx that is part of a autopod digit 5 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "5th digit of autopod proximal phalanx" EXACT [] synonym: "5th digit proximal phalanx" EXACT [] synonym: "autopod digit 5 proximal phalanx" EXACT [] @@ -331415,6 +346477,8 @@ relationship: part_of UBERON:5106052 ! digit 5 digitopodial skeleton id: UBERON:0014506 name: distal interphalangeal joint of digit 3 def: "A distal inter-phalangeal joint that is part of the 3rd digit." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "coffin joint" NARROW [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] synonym: "distal interphalangeal joint 3" RELATED [] synonym: "distal interphalangeal joint of digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -331433,6 +346497,8 @@ property_value: taxon_notes "In Equidae, this is known as the coffin joint, and id: UBERON:0014507 name: distal interphalangeal joint of pedal digit 3 def: "A distal inter-phalangeal joint that is part of the 3rd pedal digit." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal interphalangeal joint of pedal digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal interphalangeal joint of third digit of foot" EXACT [FMA:35375] @@ -331451,6 +346517,8 @@ relationship: part_of UBERON:0003633 ! pedal digit 3 id: UBERON:0014508 name: distal interphalangeal joint of manual digit 3 def: "A distal inter-phalangeal joint that is part of the 3rd manual digit." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal interphalangeal joint of manual digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal interphalangeal joint of middle finger" EXACT [FMA:35337] @@ -331498,6 +346566,8 @@ relationship: part_of UBERON:0007362 ! omasum [Term] id: UBERON:0014521 name: anterodorsal nucleus of medial geniculate body +subset: human_subset +subset: mouse_subset synonym: "ADMG" BROAD OMO:0003000 [BIRNLEX:1600, NIFSTD:NeuroNames_abbrevSource] synonym: "anterodorsal nucleus of medial geniculate complex" EXACT [BIRNLEX:1600] synonym: "anterodorsal nucleus of the medial geniculate body" RELATED [NeuroNames:852] @@ -331512,6 +346582,8 @@ relationship: part_of UBERON:0001927 {source="NIFSTD"} ! medial geniculate body [Term] id: UBERON:0014522 name: dorsolateral oculomotor nucleus +subset: human_subset +subset: mouse_subset synonym: "dorsolateral nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "nucleus dorsalis nervi oculomotorii" EXACT OMO:0003011 [] synonym: "oculomotor nerve dorsolateral nucleus" EXACT [] @@ -331525,6 +346597,8 @@ relationship: part_of UBERON:0001715 ! oculomotor nuclear complex id: UBERON:0014523 name: oculomotor division of oculomotor nuclear complex def: "A division of oculomotor nuclear complex that exists in organisms with electric organs which is responsible for eye movements." [ISBN:0471888893] +subset: human_subset +subset: mouse_subset is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019267 ! gray matter of midbrain relationship: part_of UBERON:0001715 ! oculomotor nuclear complex @@ -331534,6 +346608,8 @@ relationship: present_in_taxon NCBITaxon:70846 ! Uranoscopidae id: UBERON:0014524 name: electromotor division of oculomotor nuclear complex def: "A division of oculomotor nuclear complex that exists in organisms with electric organs which has axons terminating in the electric organs." [ISBN:0471888893] +subset: human_subset +subset: mouse_subset is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019267 ! gray matter of midbrain relationship: part_of UBERON:0001715 ! oculomotor nuclear complex @@ -331542,6 +346618,8 @@ relationship: present_in_taxon NCBITaxon:70846 ! Uranoscopidae [Term] id: UBERON:0014525 name: limb of internal capsule of telencephalon +subset: human_subset +subset: mouse_subset synonym: "internal capsule subdivision" EXACT [FMA:61951] synonym: "limb of internal capsule" EXACT [] synonym: "subdivision of internal capsule" EXACT [FMA:61951] @@ -331554,6 +346632,8 @@ relationship: part_of UBERON:0001887 ! internal capsule of telencephalon id: UBERON:0014526 name: anterior limb of internal capsule def: "Portion of internal capsule lying between the lenticular nucleus and the head of the caudate nucleus." [NLX:144257] +subset: human_subset +subset: mouse_subset synonym: "anterior internal capsule" RELATED [ISBN:0123813611] synonym: "anterior limb" RELATED [Wikipedia:Anterior_limb_of_internal_capsule] synonym: "capsula interna, pars anterior" EXACT OMO:0003011 [FMA:61952, FMA:TA] @@ -331574,6 +346654,8 @@ property_value: taxon_notes "the streaming fibers of the anterior internal capsu id: UBERON:0014527 name: posterior limb of internal capsule def: "Portion of internal capsule lying between the globus pallidus and the thalamus (Nolte, The Human Brain, 6th ed., 2009, pg 409, modified by MM)." [NLX:144258] +subset: human_subset +subset: mouse_subset synonym: "capsula interna, pars posterior" EXACT OMO:0003011 [FMA:61954, FMA:TA] synonym: "crus posterius capsulae internae" EXACT OMO:0003011 [FMA:61954, FMA:TA] synonym: "posterior internal capsule" RELATED [] @@ -331593,6 +346675,8 @@ relationship: part_of UBERON:0001887 {source="FMA"} ! internal capsule of telenc id: UBERON:0014528 name: extreme capsule def: "Thin band of fibers separating the claustrum from the insular cortex." [NLXANAT:1010014] +subset: human_subset +subset: mouse_subset synonym: "band of Baillarger" RELATED [Wikipedia:Extreme_capsule] synonym: "capsula extrema" RELATED [Wikipedia:Extreme_capsule] xref: BAMS:ex @@ -331613,6 +346697,8 @@ property_value: external_definition "Thin band of fibers separating the claustru id: UBERON:0014529 name: lenticular fasciculus def: "The lenticular fasciculus is a tract connecting the globus pallidus to the Thalamic fasciculus. The thalamic fasciculus (composed of the lenticular fasciculus and ansa lenticularis) runs into the Thalamus. It connects the globus pallidus to the thalamus." [Wikipedia:Lenticular_fasciculus] +subset: human_subset +subset: mouse_subset synonym: "dorsal division of ansa lenticularis" EXACT [FMA:61976] synonym: "fasciculus lenticularis" EXACT [FMA:TA] synonym: "fasciculus lenticularis" RELATED OMO:0003011 [Wikipedia:Lenticular_fasciculus] @@ -331643,6 +346729,8 @@ property_value: external_ontology_notes "FMA appears to divide this into diencep [Term] id: UBERON:0014530 name: white matter lamina of neuraxis +subset: human_subset +subset: mouse_subset synonym: "lamina of neuraxis" BROAD [FMA:83856] synonym: "neuraxis lamina" BROAD [FMA:83856] xref: FMA:83856 @@ -331655,6 +346743,8 @@ relationship: part_of UBERON:0002316 ! white matter [Term] id: UBERON:0014531 name: white matter lamina of diencephalon +subset: human_subset +subset: mouse_subset synonym: "diencephalon lamina" BROAD [FMA:62449] synonym: "lamina of diencephalon" BROAD [FMA:62449] xref: FMA:62449 @@ -331666,6 +346756,8 @@ relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0014532 name: white matter lamina of cerebral hemisphere +subset: human_subset +subset: mouse_subset synonym: "cerebral hemisphere lamina" BROAD [FMA:67951] synonym: "lamina of cerebral hemisphere" BROAD [FMA:67951] xref: FMA:67951 @@ -331678,6 +346770,8 @@ relationship: part_of UBERON:0001869 ! cerebral hemisphere id: UBERON:0014533 name: medullary lamina of thalamus def: "Medullary laminae of thalamus are layers of myelinated fibres that appear on cross sections of the thalamus. They also are commonly referred to as laminae medullares thalami or medullary layers of thalamus. The specific layers are: Lamina medullaris lateralis (external medullary lamina) - separates ventral and lateral thalamus from the subthalamus and thalamic reticular nucleus; Lamina medullaris medialis (internal medullary lamina) - positioned between the dorsomedial and ventral nuclei of thalamus, encloses the intralaminar nuclei (centromedian nucleus, paracentral, and central lateral)." [Wikipedia:Medullary_laminae_of_thalamus] +subset: human_subset +subset: mouse_subset synonym: "external medullary lamina" RELATED [Wikipedia:Medullary_laminae_of_thalamus] synonym: "internal medullary lamina" RELATED [Wikipedia:Medullary_laminae_of_thalamus] synonym: "laminae medullares thalami" RELATED [Wikipedia:Medullary_laminae_of_thalamus] @@ -331692,6 +346786,8 @@ relationship: part_of UBERON:0010225 ! thalamic complex id: UBERON:0014534 name: external medullary lamina of thalamus def: "A medullary lamina that separates ventral and lateral thalamus from the subthalamus and thalamic reticular nucleus." [Wikipedia:Medullary_laminae_of_thalamus] +subset: human_subset +subset: mouse_subset synonym: "external medullary lamina" EXACT [FMA:62078] synonym: "external medullary lamina of the thalamus" RELATED [BAMS:em, BAMS:eml] synonym: "lamella medullaris externa" EXACT OMO:0003011 [FMA:62078, FMA:TA] @@ -331716,6 +346812,8 @@ relationship: adjacent_to UBERON:0001903 ! thalamic reticular nucleus id: UBERON:0014537 name: periamygdaloid cortex def: "Is located ventral to the basal nucleus and has three subdivisions: the periamygdaloid cortex, the medial division, and the sulcal division." [NLX:144210] +subset: human_subset +subset: mouse_subset synonym: "periamygdaloid area" RELATED [NLX:144210] synonym: "periamygdaloid cortex" EXACT [NLX:144210] xref: BAMS:PAC @@ -331730,6 +346828,8 @@ relationship: part_of UBERON:0006108 {source="NIFSTD"} ! corticomedial nuclear c id: UBERON:0014538 name: subdivision of spinal cord central canal def: "A subdivision of the central canal of the spinal cord along its anterior-posterior axis. This is typically subdivided into cervical, thoracic, lumbar and sacral segments." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "regional part of spinal cord central canal" EXACT HUMAN_PREFERRED [BIRNLEX:717] xref: BIRNLEX:717 @@ -331744,6 +346844,8 @@ relationship: subdivision_of UBERON:0002291 ! central canal of spinal cord id: UBERON:0014539 name: precommissural fornix of forebrain def: "Part of fornix extending from the body that curves ventrally rostral to the crossing of the anterior commissure ending in the septal nuclei." [BIRNLEX:1033, https://github.com/obophenotype/uberon/issues/1277] +subset: human_subset +subset: mouse_subset synonym: "fornix precommissuralis" EXACT OMO:0003011 [FMA:61967, FMA:TA] synonym: "precommissural fornix" EXACT [BIRNLEX:1033] xref: BAMS:fpr @@ -331761,6 +346863,8 @@ relationship: part_of UBERON:0000052 ! fornix of brain id: UBERON:0014540 name: white matter lamina of cerebellum def: "The white laminae of cerebellum is subdivision of the cerebellar cortex comprised of myelinated axons lying deep to the granule cell layer of the cerebellar cortex." [http://neurolex.org/wiki/Category\:White_laminae_of_cerebellum] +subset: human_subset +subset: mouse_subset synonym: "isthmus cinguli" RELATED OMO:0003011 [NeuroNames:163] synonym: "isthmus gyri cingulatus" RELATED OMO:0003011 [NeuroNames:163] synonym: "isthmus gyri cinguli" RELATED OMO:0003011 [NeuroNames:163] @@ -331787,6 +346891,8 @@ id: UBERON:0014541 name: thoracic division of spinal cord central canal def: "Part of spinal cord central canal contained in the thoracic spinal cord. It is continuous rostrally with the cervical spinal cord central canal and caudally with the lumbar spinal cord central canal." [BIRNLEX:1395] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "thoracic spinal cord central canal" EXACT HUMAN_PREFERRED [BIRNLEX:1395] xref: BIRNLEX:1395 xref: FMA:321588 @@ -331802,6 +346908,8 @@ relationship: subdivision_of UBERON:0003038 ! thoracic spinal cord id: UBERON:0014542 name: cervical division of cord spinal central canal def: "Part of central canal contained within the cervical spinal cord. It is continuous caudally with the thoracic spinal cord central canal and rostrally with the fourth ventricle of the brain via the obex." [BIRNLEX:1511] +subset: human_subset +subset: mouse_subset synonym: "cervical spinal cord central canal" EXACT HUMAN_PREFERRED [BIRNLEX:1511] xref: BIRNLEX:1511 xref: FMA:321590 @@ -331817,6 +346925,8 @@ id: UBERON:0014543 name: lumbar division of spinal cord central canal def: "Part of central canal lying within the lumbar spinal cord. It is continuous rostrally with the central canal of the thoracic spinal cord and caudally with the central canal of the sacral spinal cord." [BIRNLEX:1604] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lumbar spinal cord central canal" EXACT HUMAN_PREFERRED [BIRNLEX:1604] xref: BIRNLEX:1604 xref: FMA:321589 @@ -331832,6 +346942,8 @@ relationship: subdivision_of UBERON:0002792 ! lumbar spinal cord id: UBERON:0014544 name: frontomarginal sulcus def: "A superficial feature of the human frontal lobe; it is located at the rostral margin of the orbital surface of the lobe (Ono-90). (NN)." [BIRNLEX:4000] +subset: human_subset +subset: mouse_subset synonym: "FMS" BROAD OMO:0003000 [BIRNLEX:4000, NIFSTD:SumsDB_abbrevSource] synonym: "fronto marginal sulcus" RELATED [BAMS:frs] synonym: "frontomarginal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4000] @@ -331851,6 +346963,8 @@ id: UBERON:0014547 name: sacral division of spinal cord central canal def: "Part of spinal cord central canal contained in the sacral spinal cord. It is continuous rostrally with the spinal cord central canal of the lumbar cord." [NLXANAT:1010008] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lumbosacral spinal cord central canal" RELATED [] synonym: "sacral spinal cord central canal" EXACT HUMAN_PREFERRED [NLXANAT:1010008] xref: FMA:321696 @@ -331866,6 +346980,8 @@ relationship: subdivision_of UBERON:0005843 ! sacral spinal cord id: UBERON:0014548 name: pyramidal layer of CA1 def: "CA1 part of stratum pyramidale hippocampi." [BIRNLEX:4110] +subset: human_subset +subset: mouse_subset synonym: "CA1 part of stratum pyramidale hippocampi" EXACT HUMAN_PREFERRED [BIRNLEX:4110] synonym: "CA1 pyramidal cell layer" RELATED [BIRNLEX:4110] synonym: "CA1 stratum pyramidale" RELATED [BIRNLEX:4110] @@ -331892,6 +347008,8 @@ relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer id: UBERON:0014549 name: pyramidal layer of CA2 def: "Part of pyramidal cell layer in area CA2, lying superficial to the CA2 stratum oriens, and deep to the stratum radiatum of CA2, continuous with the pyramidal cell layers of CA1 and CA3." [BIRNLEX:4111] +subset: human_subset +subset: mouse_subset synonym: "CA2 part of stratum pyramidale hippocampi" EXACT HUMAN_PREFERRED [BIRNLEX:4111] synonym: "CA2 stratum pyramidale hippocampi" EXACT [BIRNLEX:4111] synonym: "field CA2, pyramidal layer" EXACT [ABA:CA2sp] @@ -331913,6 +347031,8 @@ relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer id: UBERON:0014550 name: pyramidal layer of CA3 def: "A layer of hippocampal field that is part of a hippocampus pyramidal layer and is part of a CA3 field of hippocampus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "CA3 part of stratum pyramidale hippocampi" EXACT HUMAN_PREFERRED [BIRNLEX:4112] synonym: "CA3 stratum pyramidale hippocampi" EXACT [BIRNLEX:4112] synonym: "field CA3, pyramidal layer" EXACT [ABA:CA3sp] @@ -331934,6 +347054,8 @@ relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer id: UBERON:0014551 name: CA2 stratum oriens def: "Part of stratum oriens lying in area CA2 deep to the CA2 pyramidal cell layer and continuous with stratum oriens of area CA2 and bounded by the dentate gyrus hilus[Modified from NIFSTD by CJM]." [BIRNLEX:4115, UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "CA2 part of stratum oriens" EXACT HUMAN_PREFERRED [BIRNLEX:4115] synonym: "CA2 stratum oriens" EXACT [BIRNLEX:4115] synonym: "oriens layer of CA2 field" EXACT [FMA:277858] @@ -331954,6 +347076,8 @@ relationship: part_of UBERON:0005371 ! hippocampus stratum oriens id: UBERON:0014552 name: CA1 stratum oriens def: "Part of stratum oriens lying in area CA1, superficial to the alveus of CA1 and deep to the pyramidal cell layer of CA1. It is continuous with the stratum oriens of CA2 and bounded by the subiculum." [BIRNLEX:4116] +subset: human_subset +subset: mouse_subset synonym: "CA1 part of stratum oriens" EXACT HUMAN_PREFERRED [BIRNLEX:4116] synonym: "CA1 stratum oriens" EXACT [BIRNLEX:4116] synonym: "oriens layer of CA1 field" EXACT [FMA:277856] @@ -331974,6 +347098,8 @@ relationship: part_of UBERON:0005371 ! hippocampus stratum oriens id: UBERON:0014553 name: CA3 stratum oriens def: "Part of stratum oriens lying in area CA3 deep to the CA3 pyramidal cell layer and continuous with stratum oriens of area CA2 and bounded by the dentate gyrus hilus." [BIRNLEX:4117] +subset: human_subset +subset: mouse_subset synonym: "CA3 part of stratum oriens" EXACT HUMAN_PREFERRED [BIRNLEX:4117] synonym: "CA3 stratum oriens" EXACT [BIRNLEX:4117] synonym: "oriens layer of CA3 field" EXACT [FMA:277860] @@ -331994,6 +347120,8 @@ relationship: part_of UBERON:0005371 ! hippocampus stratum oriens id: UBERON:0014554 name: CA1 stratum radiatum def: "Part of stratum radiatum lying in area CA1, superficial to the CA1 pyramidal cell layer and deep to the CA1 stratum lucidum-moleculare, continuous with the stratum radiatum of CA2 and bounded by the subiculum. It contains the Schaffer collateral projection from CA3." [BIRNLEX:4119] +subset: human_subset +subset: mouse_subset synonym: "CA1 part of stratum radiatum" EXACT HUMAN_PREFERRED [BIRNLEX:4119] synonym: "CA1 stratum radiatum" EXACT [BIRNLEX:4119] synonym: "radiate layer of CA1 field" EXACT [FMA:277862] @@ -332014,6 +347142,8 @@ relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum id: UBERON:0014555 name: CA2 stratum radiatum def: "Part of stratum radiatum in area CA2, lying superficial to the pyramidal cell layer and deep to CA2 stratum lacunosum-moleculare, continuous with the stratum radiatum of CA1 and CA3." [BIRNLEX:4120] +subset: human_subset +subset: mouse_subset synonym: "CA2 part of stratum radiatum" EXACT HUMAN_PREFERRED [BIRNLEX:4120] synonym: "CA2 stratum radiatum" EXACT [BIRNLEX:4120] synonym: "radiate layer of CA2 field" EXACT [FMA:277864] @@ -332034,6 +347164,8 @@ relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum id: UBERON:0014556 name: CA3 stratum radiatum def: "Part of stratum radiatum in area CA3, lying superficial to the stratum lucidum and deep to CA3 stratum lacunosum-moleculare." [BIRNLEX:4121] +subset: human_subset +subset: mouse_subset synonym: "CA3 part of stratum radiatum" EXACT HUMAN_PREFERRED [BIRNLEX:4121] synonym: "CA3 stratum radiatum" EXACT [BIRNLEX:4121] synonym: "radiate layer of CA3 field" EXACT [FMA:277866] @@ -332054,6 +347186,8 @@ relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum id: UBERON:0014557 name: CA1 stratum lacunosum moleculare def: "Part of stratum lacunosum-moleculare lying in area CA1, superficial to CA1 stratum radiatum and bounded by the pial surface, continuous with stratum lacunosum-moleculare of CA2 and the subiculum stratum moleculare." [BIRNLEX:4123] +subset: human_subset +subset: mouse_subset synonym: "CA1 part of stratum lacunosum moleculare" EXACT HUMAN_PREFERRED [BIRNLEX:4123] synonym: "CA1 stratum lacunosum moleculare" EXACT [BIRNLEX:4123] synonym: "lacunar-molecular layer of CA1 field" EXACT [FMA:277850] @@ -332074,6 +347208,8 @@ relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare id: UBERON:0014558 name: CA2 stratum lacunosum moleculare def: "Part of stratum lacunosum-moleculare lying in area CA2, superficial to the CA2 stratum radiatum, that is continuous with the stratum lacunosum-moleculare in areas CA3 and CA1." [BIRNLEX:4124] +subset: human_subset +subset: mouse_subset synonym: "CA2 part of stratum lacunosum moleculare" EXACT HUMAN_PREFERRED [BIRNLEX:4124] synonym: "CA2 stratum lacunosum moleculare" EXACT [BIRNLEX:4124] synonym: "lacunar-molecular layer of CA2 field" EXACT [FMA:277852] @@ -332094,6 +347230,8 @@ relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare id: UBERON:0014559 name: CA3 stratum lacunosum moleculare def: "Part of stratum lacunosum-moleculare in area CA3. It is bounded by the stratum lacunosum-moleculare of CA2 and CA1. It is bounded superficially by the pial surface and deep by the CA3 stratum radiatum. It is continuous with the stratum lacunosum-moleculare of CA2." [BIRNLEX:4125] +subset: human_subset +subset: mouse_subset synonym: "CA3 part of stratum lacunosum moleculare" EXACT HUMAN_PREFERRED [BIRNLEX:4125] synonym: "CA3 stratum lacunosum moleculare" EXACT [BIRNLEX:4125] synonym: "lacunar-molecular layer of CA3 field" EXACT [FMA:277854] @@ -332114,6 +347252,8 @@ relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare id: UBERON:0014560 name: CA3 stratum lucidum def: "A layer of hippocampal field that is part of a CA3 field of hippocampus and is part of a hippocampus stratum lucidum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "CA3 stratum lucidum" EXACT [NLXANAT:1005040] synonym: "stratum lucidum of the CA3 field" EXACT [NeuroNames:2951] xref: BAMS:slu @@ -332133,6 +347273,8 @@ relationship: part_of UBERON:0007637 ! hippocampus stratum lucidum id: UBERON:0014567 name: layer of hippocampal field def: "A subdivision of a layer of the hippocampus (e.g. stratum moleculare) covering all or port of a hippocampal field (e.g. CA1)." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/297] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "hippocampal field layer" EXACT [] is_a: UBERON:0000119 ! cell layer @@ -332143,6 +347285,8 @@ relationship: part_of UBERON:0002305 ! layer of hippocampus id: UBERON:0014568 name: dorsal tegmental nucleus pars dorsalis def: "Part of dorsal tegmental nucleus characterized by round, small cells that are lightly stained in Nissl preparations." [NLXANAT:20090407] +subset: human_subset +subset: mouse_subset synonym: "dorsal tegmental nucleus of Gudden pars dorsalis" RELATED [NLXANAT:20090407] synonym: "dorsal tegmental nucleus pars dorsalis" EXACT [NLXANAT:20090407] xref: NLXANAT:20090407 @@ -332154,6 +347298,8 @@ property_value: taxon_notes "According to Hayakawa and Zuo (1983), the TDD canno id: UBERON:0014569 name: dorsal tegmental nucleus pars ventralis def: "Cytoarchitectural part of the dorsal tegmental nucleus based on cell size. The pars ventralis is characterized by medium sized oval or triangular cells that stain darkly in NIssl stains." [NLXANAT:20090408] +subset: human_subset +subset: mouse_subset synonym: "dorsal tegmental nucleus of Gudden pars ventralis" RELATED [NLXANAT:20090408] synonym: "dorsal tegmental nucleus pars ventralis" EXACT [NLXANAT:20090408] synonym: "pars ventralis of the dorsal tegmental nucleus" RELATED [NLXANAT:20090408] @@ -332167,6 +347313,8 @@ property_value: taxon_notes "According to Hayakawa and Zuo (1983), the TDV canno id: UBERON:0014570 name: CA1 alveus def: "CA1 portion of the alveus." [NLXANAT:1005038] +subset: human_subset +subset: mouse_subset synonym: "alveus of the CA1 field" EXACT [NeuroNames:2938] xref: FMA:277874 xref: neuronames:2938 @@ -332180,6 +347328,8 @@ relationship: part_of UBERON:0007639 ! hippocampus alveus id: UBERON:0014571 name: CA3 alveus def: "Part of alveus lying within hippocampal sector CA3." [NLXANAT:1005039] +subset: human_subset +subset: mouse_subset synonym: "alveus of the CA3 field" EXACT [NeuroNames:2948] xref: FMA:277878 xref: neuronames:2948 @@ -332192,6 +347342,8 @@ relationship: part_of UBERON:0007639 ! hippocampus alveus [Term] id: UBERON:0014589 name: anterior nucleus of hypothalamus anterior part +subset: human_subset +subset: mouse_subset synonym: "AHNa" BROAD OMO:0003000 [BIRNLEX:1109, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "anterior hypothalamic nucleus anterior part" RELATED [BAMS:AHNa] synonym: "anterior hypothalamic nucleus, anterior part" RELATED [BAMS:AHNa] @@ -332207,6 +347359,8 @@ relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus [Term] id: UBERON:0014590 name: anterior nucleus of hypothalamus central part +subset: human_subset +subset: mouse_subset synonym: "AHNc" BROAD OMO:0003000 [BIRNLEX:1119, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "anterior hypothalamic area central part" RELATED [BAMS:AHC] synonym: "anterior hypothalamic area, central part" RELATED [BAMS:AHC] @@ -332226,6 +347380,8 @@ relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus [Term] id: UBERON:0014591 name: anterior nucleus of hypothalamus posterior part +subset: human_subset +subset: mouse_subset synonym: "AHNp" BROAD OMO:0003000 [BIRNLEX:1125, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "anterior hypothalamic nucleus posterior part" RELATED [BAMS:AHNp] synonym: "anterior hypothalamic nucleus, posterior part" RELATED [BAMS:AHNp] @@ -332243,6 +347399,8 @@ relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus [Term] id: UBERON:0014592 name: anterior nucleus of hypothalamus dorsal part +subset: human_subset +subset: mouse_subset synonym: "AHNd" BROAD OMO:0003000 [BIRNLEX:1139, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "anterior hypothalamic dorsal part" RELATED [BAMS:AHNd] synonym: "anterior hypothalamic nucleus dorsal part" RELATED [BAMS:AHNd] @@ -332260,6 +347418,8 @@ relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus [Term] id: UBERON:0014593 name: tuberomammillary nucleus dorsal part +subset: human_subset +subset: mouse_subset synonym: "TMd" BROAD OMO:0003000 [BIRNLEX:1290, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "tuberomammillary nucleus dorsal part" EXACT HUMAN_PREFERRED [BIRNLEX:1290] synonym: "tuberomammillary nucleus, dorsal part" RELATED [BAMS:TMd] @@ -332274,6 +347434,8 @@ relationship: part_of UBERON:0001936 {source="NIFSTD"} ! tuberomammillary nucleu [Term] id: UBERON:0014594 name: tuberomammillary nucleus ventral part +subset: human_subset +subset: mouse_subset synonym: "TMv" BROAD OMO:0003000 [BIRNLEX:1294, NIFSTD:Swanson-rat-1998_abbrevSource] synonym: "tuberomammillary nucleus ventral part" EXACT HUMAN_PREFERRED [BIRNLEX:1294] xref: BAMS:TMv @@ -332286,6 +347448,8 @@ relationship: part_of UBERON:0001936 {source="NIFSTD"} ! tuberomammillary nucleu [Term] id: UBERON:0014595 name: paraventricular nucleus of the hypothalamus descending division - medial parvocellular part, ventral zone +subset: human_subset +subset: mouse_subset synonym: "paraventricular hypothalamic nucleus medial parvicellular part, ventral zone" RELATED [BAMS:PVHmpv] synonym: "paraventricular hypothalamic nucleus, descending division, medial parvicellular part, ventral zone" RELATED [BAMS:PVHmpv] synonym: "paraventricular nucleus of the hypothalamus descending division - medial parvicellular part, ventral zone" EXACT HUMAN_PREFERRED [BIRNLEX:1342] @@ -332302,6 +347466,8 @@ relationship: part_of UBERON:0014602 ! paraventricular nucleus of the hypothalam [Term] id: UBERON:0014596 name: paraventricular nucleus of the hypothalamus descending division - dorsal parvocellular part +subset: human_subset +subset: mouse_subset synonym: "paraventricular hypothalamic nucleus dorsal parvicellular part" RELATED [BAMS:PVHdp] synonym: "paraventricular hypothalamic nucleus, descending division, dorsal parvicellular part" RELATED [BAMS:PVHdp] synonym: "paraventricular nucleus of the hypothalamus descending division - dorsal parvicellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1348] @@ -332318,6 +347484,8 @@ relationship: part_of UBERON:0014602 ! paraventricular nucleus of the hypothalam [Term] id: UBERON:0014597 name: paraventricular nucleus of the hypothalamus descending division - lateral parvocellular part +subset: human_subset +subset: mouse_subset synonym: "paraventricular hypothalamic nucleus lateral parvicellular part" RELATED [BAMS:PVHlp] synonym: "paraventricular hypothalamic nucleus, descending division, lateral parvicellular part" RELATED [BAMS:PVHlp] synonym: "paraventricular nucleus of the hypothalamus descending division - lateral parvicellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1354] @@ -332334,6 +347502,8 @@ relationship: part_of UBERON:0014602 ! paraventricular nucleus of the hypothalam [Term] id: UBERON:0014598 name: paraventricular nucleus of the hypothalamus descending division - forniceal part +subset: human_subset +subset: mouse_subset synonym: "paraventricular hypothalamic nucleus forniceal part" RELATED [BAMS:PVHf] synonym: "paraventricular hypothalamic nucleus, descending division, forniceal part" RELATED [BAMS:PVHf] synonym: "paraventricular nucleus of the hypothalamus descending division - forniceal part" EXACT HUMAN_PREFERRED [BIRNLEX:1374] @@ -332351,6 +347521,8 @@ relationship: part_of UBERON:0014602 ! paraventricular nucleus of the hypothalam [Term] id: UBERON:0014599 name: paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part +subset: human_subset +subset: mouse_subset synonym: "paraventricular hypothalamic nucleus anterior magnocellular part" RELATED [BAMS:PVHam] synonym: "paraventricular hypothalamic nucleus, magnocellular division, anterior magnocellular part" RELATED [BAMS:PVHam] synonym: "paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1384] @@ -332367,6 +347539,8 @@ relationship: part_of UBERON:0014603 ! paraventricular nucleus of the hypothalam [Term] id: UBERON:0014600 name: paraventricular nucleus of the hypothalamus magnocellular division - medial magnocellular part +subset: human_subset +subset: mouse_subset synonym: "paraventricular hypothalamic nucleus medial magnocellular part" RELATED [BAMS:PVHmm] synonym: "paraventricular hypothalamic nucleus, magnocellular division, medial magnocellular part" RELATED [BAMS:PVHmm] synonym: "paraventricular nucleus of the hypothalamus magnocellular division - medial magnocellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1388] @@ -332383,6 +347557,8 @@ relationship: part_of UBERON:0014603 ! paraventricular nucleus of the hypothalam [Term] id: UBERON:0014601 name: paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part +subset: human_subset +subset: mouse_subset synonym: "paraventricular hypothalamic nucleus posterior magnocellular part" RELATED [BAMS:PVHpm] synonym: "paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part" RELATED [BAMS:PVHpm] synonym: "paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1394] @@ -332399,6 +347575,8 @@ relationship: part_of UBERON:0014603 ! paraventricular nucleus of the hypothalam [Term] id: UBERON:0014602 name: paraventricular nucleus of the hypothalamus descending division +subset: human_subset +subset: mouse_subset synonym: "paraventricular hypothalamic nucleus, descending division" RELATED [BAMS:PVHd] synonym: "paraventricular nucleus of the hypothalamus descending division" EXACT HUMAN_PREFERRED [BIRNLEX:1413] synonym: "paraventricular nucleus of the hypothalamus, descending division" RELATED [BAMS:PVHd] @@ -332416,6 +347594,8 @@ relationship: part_of UBERON:0001930 ! paraventricular nucleus of hypothalamus [Term] id: UBERON:0014603 name: paraventricular nucleus of the hypothalamus magnocellular division +subset: human_subset +subset: mouse_subset synonym: "paraventricular hypothalamic nucleus magnocellular division" RELATED [BAMS:PVHm] synonym: "paraventricular hypothalamic nucleus, magnocellular division" RELATED [BAMS:PVHm] synonym: "paraventricular nucleus of the hypothalamus magnocellular division" EXACT HUMAN_PREFERRED [BIRNLEX:1419] @@ -332434,6 +347614,8 @@ relationship: part_of UBERON:0001930 ! paraventricular nucleus of hypothalamus [Term] id: UBERON:0014604 name: paraventricular nucleus of the hypothalamus parvocellular division +subset: human_subset +subset: mouse_subset synonym: "paraventricular hypothalamic nucleus parvicellular division" RELATED [BAMS:PVHp] synonym: "paraventricular hypothalamic nucleus, parvicellular division" RELATED [BAMS:PVHp] synonym: "paraventricular nucleus of the hypothalamus parvicellular division" EXACT HUMAN_PREFERRED [BIRNLEX:1426] @@ -332453,6 +347635,8 @@ relationship: part_of UBERON:0001930 ! paraventricular nucleus of hypothalamus id: UBERON:0014605 name: fundus striati def: "The ventral portion of the dorsal striatum, linking the caudate nucleus and the putamen anteriorly (adapted from Wikipedia)." [NLX:144261] +subset: human_subset +subset: mouse_subset synonym: "fundus of striatum" RELATED [BAMS:FS] synonym: "fundus of the striatum" RELATED [NLX:144261] synonym: "fundus striati" EXACT [NLX:144261] @@ -332472,6 +347656,8 @@ id: UBERON:0014607 name: thoracic spinal cord lateral horn def: "A spinal cord lateral horn that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "thoracic spinal cord intermediate horn" RELATED [BIRNLEX:1397] synonym: "thoracic spinal cord lateral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1397] xref: BIRNLEX:1397 @@ -332488,6 +347674,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0014608 name: inferior occipital gyrus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "gyrus occipitalis inferior" RELATED OMO:0003011 [NeuroNames:156] synonym: "gyrus occipitalis tertius" RELATED OMO:0003011 [NeuroNames:156] synonym: "inferior occipital gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1399] @@ -332511,6 +347699,8 @@ id: UBERON:0014609 name: thoracic spinal cord dorsal horn def: "A dorsal horn of spinal cord that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "thoracic spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1404] synonym: "thoracic spinal cord posterior horn" RELATED [BIRNLEX:1404] xref: BIRNLEX:1404 @@ -332527,6 +347717,8 @@ id: UBERON:0014610 name: thoracic spinal cord ventral horn def: "A ventral horn of spinal cord that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "thoracic spinal cord anterior horn" RELATED [BIRNLEX:1410] synonym: "thoracic spinal cord ventral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1410] xref: BIRNLEX:1410 @@ -332543,6 +347735,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0014611 name: apex of thoracic spinal cord dorsal horn subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "apex of thoracic spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1427] synonym: "apex of thoracic spinal cord posterior horn" RELATED [BIRNLEX:1427] xref: BIRNLEX:1427 @@ -332557,6 +347751,8 @@ id: UBERON:0014612 name: substantia gelatinosa of thoracic spinal cord dorsal horn def: "Substantia gelatinosa of thoracic spinal cord posterior horn." [BIRNLEX:1432] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "substantia gelatinosa of thoracic spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1432] synonym: "substantia gelatinosa of thoracic spinal cord posterior horn" RELATED [BIRNLEX:1432] xref: BIRNLEX:1432 @@ -332574,6 +347770,8 @@ id: UBERON:0014613 name: cervical spinal cord gray matter def: "A gray matter of spinal cord that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cervical spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:1521] xref: BIRNLEX:1521 xref: SCTID:362438009 @@ -332589,6 +347787,8 @@ id: UBERON:0014614 name: cervical spinal cord white matter def: "A white matter of spinal cord that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cervical spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:1531] xref: BIRNLEX:1531 xref: SCTID:174829001 @@ -332603,6 +347803,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0014615 name: accessory nerve root def: "A nerve root that is part of a accessory XI nerve." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "accessory nerve root" EXACT HUMAN_PREFERRED [BIRNLEX:1580] synonym: "accessory portion of spinal accessory nerve" RELATED [NeuroNames:703] synonym: "bulbar accessory nerve" RELATED [NeuroNames:703] @@ -332633,6 +347835,8 @@ relationship: extends_fibers_into UBERON:0002019 ! accessory XI nerve [Term] id: UBERON:0014616 name: dorsal nerve root of thoracic spinal cord +subset: human_subset +subset: mouse_subset synonym: "dorsal nerve root of thoracic spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1601] synonym: "posterior nerve root of thoracic spinal cord" RELATED [BIRNLEX:1601] xref: BIRNLEX:1601 @@ -332643,6 +347847,8 @@ is_a: UBERON:0009630 {source="NIFSTD"} ! root of thoracic nerve [Term] id: UBERON:0014617 name: ventral nerve root of thoracic spinal cord +subset: human_subset +subset: mouse_subset synonym: "anterior nerve root of thoracic spinal cord" RELATED [BIRNLEX:1606] synonym: "ventral nerve root of thoracic spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1606] xref: BIRNLEX:1606 @@ -332653,6 +347859,8 @@ is_a: UBERON:0009630 {source="NIFSTD"} ! root of thoracic nerve [Term] id: UBERON:0014618 name: middle frontal sulcus +subset: human_subset +subset: mouse_subset synonym: "intermediate frontal sulcus" RELATED [NeuroNames:62] synonym: "MFS" BROAD OMO:0003000 [BIRNLEX:1650, NIFSTD:NeuroNames_abbrevSource] synonym: "middle frontal fissure" RELATED [BIRNLEX:1650] @@ -332676,6 +347884,8 @@ id: UBERON:0014619 name: cervical spinal cord lateral horn def: "A spinal cord lateral horn that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cervical spinal cord intermediate horn" RELATED [BIRNLEX:1665] synonym: "cervical spinal cord lateral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1665] xref: BIRNLEX:1665 @@ -332694,6 +347904,8 @@ id: UBERON:0014620 name: cervical spinal cord dorsal horn def: "A dorsal horn of spinal cord that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cervical spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1673] synonym: "cervical spinal cord posterior horn" RELATED [BIRNLEX:1673] xref: BIRNLEX:1673 @@ -332711,6 +347923,8 @@ id: UBERON:0014621 name: cervical spinal cord ventral horn def: "A ventral horn of spinal cord that is part of a cervical spinal cord." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cervical spinal cord anterior horn" RELATED [BIRNLEX:1680] synonym: "cervical spinal cord ventral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1680] xref: BIRNLEX:1680 @@ -332729,6 +347943,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0014622 name: apex of cervical spinal cord dorsal horn subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "apex of cervical spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1714] synonym: "apex of cervical spinal cord posterior horn" RELATED [BIRNLEX:1714] xref: BIRNLEX:1714 @@ -332743,6 +347959,8 @@ id: UBERON:0014623 name: substantia gelatinosa of cervical spinal cord dorsal horn def: "A substantia gelatinosa that is part of a cervical spinal cord dorsal horn." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "substantia gelatinosa of cervical spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1723] synonym: "substantia gelatinosa of cervical spinal cord posterior horn" RELATED [BIRNLEX:1723] xref: BIRNLEX:1723 @@ -332757,6 +347975,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0014624 name: basis modioli +subset: human_subset +subset: mouse_subset synonym: "base of modiolus cochleae" EXACT [FMA:75640] synonym: "base of modiolus of cochlea" RELATED [BIRNLEX:2522] synonym: "basis cochleae" EXACT OMO:0003011 [FMA:75640, FMA:TA] @@ -332772,6 +347992,8 @@ relationship: part_of UBERON:0006723 ! cochlear modiolus [Term] id: UBERON:0014626 name: base of cochlear canal +subset: human_subset +subset: mouse_subset synonym: "base of the cochlear canal" EXACT HUMAN_PREFERRED [BIRNLEX:2556] xref: BIRNLEX:2556 xref: SCTID:279778001 @@ -332783,6 +348005,8 @@ relationship: part_of UBERON:0006106 ! cochlear canal [Term] id: UBERON:0014628 name: vestibular fissure of the cochlear canal +subset: human_subset +subset: mouse_subset synonym: "vestibular fissure of the cochlear canal" EXACT HUMAN_PREFERRED [BIRNLEX:2558] xref: BIRNLEX:2558 xref: SCTID:279772000 @@ -332794,6 +348018,8 @@ relationship: part_of UBERON:0006106 ! cochlear canal [Term] id: UBERON:0014629 name: terminal part of the cochlear canal +subset: human_subset +subset: mouse_subset synonym: "terminal part of the cochlear canal" EXACT HUMAN_PREFERRED [BIRNLEX:2559] xref: BIRNLEX:2559 xref: SCTID:279780007 @@ -332805,6 +348031,8 @@ relationship: part_of UBERON:0006106 ! cochlear canal [Term] id: UBERON:0014630 name: ventral gray commissure of spinal cord +subset: human_subset +subset: mouse_subset synonym: "anterior grey commissure of spinal cord" EXACT [FMA:77038] synonym: "commissura grisea anterior medullae spinalis" EXACT [FMA:TA] synonym: "spinal cord anterior gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:2676] @@ -332821,6 +348049,8 @@ relationship: part_of UBERON:0004677 {source="FMA"} ! spinal cord gray commissur id: UBERON:0014631 name: dorsal gray commissure of spinal cord def: "The part of the gray commissure in the spinal central gray posterior to the central canal of the spinal cord." [NeuroNames:2017] +subset: human_subset +subset: mouse_subset synonym: "commissura grisea posterior medullae spinalis" EXACT [FMA:TA] synonym: "dorsal gray commissure" EXACT [NeuroNames:2017] synonym: "dorsal grey commissure of spinal cord" EXACT [FMA:77037] @@ -332839,6 +348069,8 @@ property_value: taxon_notes "It is identified by Nissl stain and found in the hu id: UBERON:0014632 name: apex of lumbar spinal cord dorsal horn subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "apex of lumbar spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:811] synonym: "apex of lumbar spinal cord posterior horn" RELATED [BIRNLEX:811] xref: BIRNLEX:811 @@ -332853,6 +348085,8 @@ id: UBERON:0014633 name: substantia gelatinosa of lumbar spinal cord dorsal horn def: "A substantia gelatinosa that is part of a lumbar spinal cord dorsal horn." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "substantia gelatinosa of lumbar spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:819] synonym: "substantia gelatinosa of lumbar spinal cord posterior horn" RELATED [BIRNLEX:819] xref: BIRNLEX:819 @@ -332869,6 +348103,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0014634 name: ventral nerve root of cervical spinal cord def: "A ventral root of spinal cord that overlaps a cervical spinal cord." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "anterior nerve root of cervical spinal cord" RELATED [BIRNLEX:958] synonym: "ventral nerve root of cervical spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:958] xref: BIRNLEX:958 @@ -332884,6 +348120,8 @@ relationship: overlaps UBERON:0002726 ! cervical spinal cord id: UBERON:0014635 name: dorsal nerve root of cervical spinal cord def: "A dorsal root of spinal cord that overlaps a cervical spinal cord." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "dorsal nerve root of cervical spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:964] synonym: "posterior nerve root of cervical spinal cord" RELATED [BIRNLEX:964] xref: BIRNLEX:964 @@ -332900,6 +348138,8 @@ id: UBERON:0014636 name: thoracic spinal cord gray matter def: "A gray matter of spinal cord that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "thoracic spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:980] xref: BIRNLEX:980 xref: SCTID:362441000 @@ -332915,6 +348155,8 @@ id: UBERON:0014637 name: thoracic spinal cord white matter def: "A white matter of spinal cord that is part of a thoracic spinal cord." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "thoracic spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:999] xref: BIRNLEX:999 xref: SCTID:367881009 @@ -332931,6 +348173,8 @@ id: UBERON:0014638 name: lumbar spinal cord dorsal horn def: "A dorsal horn of spinal cord that is part of a lumbar spinal cord." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lumbar spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:884] synonym: "lumbar spinal cord posterior horn" RELATED [BIRNLEX:884] xref: BIRNLEX:884 @@ -332947,6 +348191,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0014639 name: frontal sulcus def: "A sulcus of brain that is part of a frontal cortex." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "frontal lobe sulci" EXACT OMO:0003004 [HBA:FLs] synonym: "frontal lobe sulcus" EXACT [] xref: HBA:9354 @@ -332961,6 +348207,8 @@ relationship: part_of UBERON:0001870 ! frontal cortex id: UBERON:0014640 name: occipital gyrus def: "A gyrus that is part of a occipital lobe." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "gyrus occipitalis" RELATED OMO:0003011 [NeuroNames:152] xref: BAMS:OG xref: BIRNLEX:747 @@ -332975,6 +348223,8 @@ relationship: part_of UBERON:0002021 ! occipital lobe id: UBERON:0014641 name: terminal nerve root def: "A nerve root that extends_fibers_into a terminal nerve." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cranial nerve 0 root" EXACT [Wikipedia:Terminal_nerve] synonym: "root of terminal nerve" EXACT [] synonym: "terminal nerve root" EXACT HUMAN_PREFERRED [BIRNLEX:4045] @@ -332988,6 +348238,8 @@ relationship: extends_fibers_into UBERON:0002924 ! terminal nerve id: UBERON:0014642 name: vestibulocerebellum def: "A phylogenetic subdivision of the cerebellum, the oldest part, which regulates balance and eye movements. It receives vestibular input from both the semicircular canals and from the vestibular nuclei, and sends fibres back to the medial and lateral vestibular nuclei. It also receives visual input from the superior colliculi and from the visual cortex (the latter via the pontine nuclei, forming a cortico-ponto-cerebellar pathway). Lesions of the vestibulocerebellum cause disturbances of balance and gait." [Wikipedia:Anatomy_of_the_cerebellum#Phylogenetic_and_functional_divisions] +subset: human_subset +subset: mouse_subset synonym: "archaeocerebellum" RELATED [BIRNLEX:904] synonym: "archeocerebellum" RELATED [BIRNLEX:904] synonym: "archicerebellum" EXACT [] @@ -333000,6 +348252,8 @@ relationship: part_of UBERON:0002037 ! cerebellum id: UBERON:0014643 name: spinocerebellum def: "A phylogenetic subdivision of the cerebellum, the intermediate part, which regulates body and limb movements. It receives proprioception input from the dorsal columns of the spinal cord (including the spinocerebellar tract) and the trigeminal nerve, as well as from visual and auditory systems. It sends fibres to deep cerebellar nuclei which in turn project to both the cerebral cortex and the brain stem, thus providing modulation of descending motor systems." [Wikipedia:Anatomy_of_the_cerebellum#Phylogenetic_and_functional_divisions] +subset: human_subset +subset: mouse_subset synonym: "paleocerebellum" EXACT [] xref: Wikipedia:Cerebellum is_a: UBERON:0002616 ! regional part of brain @@ -333014,6 +348268,8 @@ name: cerebrocerebellum alt_id: UBERON:0004005 def: "The part of the cerebellar cortex that receives input from the cerebral cortex via axons from the pontine relay nuclei." [https://www.ncbi.nlm.nih.gov/books/NBK11100/] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cerebellum lateral hemisphere" EXACT [MP:0009965] synonym: "cerebellum lateral zone" EXACT [MP:0009965] @@ -333055,6 +348311,8 @@ relationship: part_of UBERON:0002691 ! ventral tegmental area id: UBERON:0014647 name: hemisphere part of cerebellar anterior lobe def: "A multi-tissue structure that is part of a anterior lobe of cerebellum and is part of a cerebellar hemisphere." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hemisphere of anterior lobe" EXACT [FMA:72254] synonym: "hemisphere of anterior lobe of cerebellum" EXACT [FMA:72254] synonym: "hemispherium lobus anterior" EXACT OMO:0003011 [FMA:72254, FMA:TA] @@ -333074,6 +348332,8 @@ relationship: part_of UBERON:0002245 ! cerebellar hemisphere id: UBERON:0014648 name: hemisphere part of cerebellar posterior lobe def: "A multi-tissue structure that is part of a cerebellar hemisphere and is part of a posterior lobe of cerebellum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hemisphere of posterior lobe" EXACT [FMA:72256] synonym: "hemisphere of posterior lobe of cerebellum" EXACT [FMA:72256] synonym: "hemispherium lobus posterior" EXACT OMO:0003011 [FMA:72256, FMA:TA] @@ -333093,6 +348353,8 @@ relationship: part_of UBERON:0004002 ! posterior lobe of cerebellum id: UBERON:0014649 name: white matter of medulla oblongata def: "A white matter that is part of a medulla oblongata." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "medullary white matter" RELATED [BAMS:mw] synonym: "substantia alba medullae oblongatae" EXACT [FMA:TA] synonym: "white matter of medulla" EXACT [FMA:83944] @@ -333112,6 +348374,8 @@ relationship: part_of UBERON:0001896 ! medulla oblongata id: UBERON:0014650 name: dorsal hypothalamic nucleus def: "A nerve cell nucleus situated in the dorsal portion of the intermediate hypothalamic region." [BTO:0002451, Dorlands_Medical_Dictionary:MerckSource] +subset: human_subset +subset: mouse_subset synonym: "dorsal nucleus of hypothalamus" EXACT [FMA:77685] synonym: "nucleus dorsalis hypothalami" RELATED [BTO:0002451] xref: BAMS:DHy @@ -333124,12 +348388,16 @@ is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus [Term] id: UBERON:0014663 name: nucleus recessus lateralis +subset: human_subset +subset: mouse_subset xref: BTO:0003662 is_a: UBERON:0036177 ! nucleus recessus [Term] id: UBERON:0014664 name: nucleus recessus posterioris +subset: human_subset +subset: mouse_subset xref: BTO:0003663 is_a: UBERON:0036177 ! nucleus recessus @@ -333137,6 +348405,8 @@ is_a: UBERON:0036177 ! nucleus recessus id: UBERON:0014665 name: nucleus preopticus def: "The nucleus preopticus (NPO) of the hypothalamus of common carp, is a homolog of the paraventricular nucleus of mammals." [BTO:0003664] +subset: human_subset +subset: mouse_subset synonym: "nucleus praeopticus" RELATED [BTO:0003664] xref: BTO:0003664 is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus @@ -333144,6 +348414,8 @@ is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus [Term] id: UBERON:0014666 name: nucleus recessus preopticus +subset: human_subset +subset: mouse_subset xref: BTO:0003665 is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus @@ -333151,6 +348423,8 @@ is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus id: UBERON:0014667 name: periventricular nucleus of hypothalamus def: "A small nucleus at the base of the hypothalamus, adjacent to the arcuate nucleus." [BTO:0003795] +subset: human_subset +subset: mouse_subset synonym: "periventricular hypothalamic nucleus" RELATED [BTO:0003795] synonym: "periventricular nucleus of the hypothalamus" RELATED [BAMS:PE] xref: BAMS:PE @@ -333162,6 +348436,8 @@ is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus [Term] id: UBERON:0014668 name: distal interphalangeal joint of manual digit 2 +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal interphalangeal joint of index finger" EXACT [FMA:35334] synonym: "distal interphalangeal joint of manual digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -333176,6 +348452,8 @@ relationship: part_of UBERON:0003622 ! manual digit 2 [Term] id: UBERON:0014670 name: distal interphalangeal joint of manual digit 4 +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal interphalangeal joint of manual digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal interphalangeal joint of ring finger" EXACT [FMA:35340] @@ -333190,6 +348468,8 @@ relationship: part_of UBERON:0003624 ! manual digit 4 [Term] id: UBERON:0014671 name: distal interphalangeal joint of manural digit 5 +subset: human_subset +subset: mouse_subset synonym: "distal interphalangeal joint of little finger" EXACT [FMA:35343] synonym: "distal interphalangeal joint of manural digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: FMA:35343 @@ -333203,6 +348483,8 @@ relationship: part_of UBERON:0003625 ! manual digit 5 [Term] id: UBERON:0014672 name: distal interphalangeal joint of pedal digit 2 +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal interphalangeal joint of pedal digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal interphalangeal joint of second digit of foot" EXACT [FMA:35369] @@ -333218,6 +348500,8 @@ relationship: part_of UBERON:0003632 ! pedal digit 2 [Term] id: UBERON:0014674 name: distal interphalangeal joint of pedal digit 4 +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal interphalangeal joint of fourth digit of foot" EXACT [FMA:35387] synonym: "distal interphalangeal joint of fourth toe" EXACT [FMA:35387] @@ -333233,6 +348517,8 @@ relationship: part_of UBERON:0003634 ! pedal digit 4 [Term] id: UBERON:0014675 name: distal interphalangeal joint of pedal digit 5 +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "distal interphalangeal joint of fifth digit of foot" EXACT [FMA:35393] synonym: "distal interphalangeal joint of fifth toe" EXACT [FMA:35393] @@ -333250,6 +348536,8 @@ relationship: part_of UBERON:0003635 ! pedal digit 5 id: UBERON:0014677 name: distal interphalangeal joint of digit 2 def: "A distal interphalangeal joint that is part of a digit 2." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal interphalangeal joint 2" RELATED [] synonym: "distal interphalangeal joint of digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: NCIT:C102291 @@ -333263,6 +348551,8 @@ property_value: editor_note "check whether NCITA classes belong with hand or gen id: UBERON:0014679 name: distal interphalangeal joint of digit 4 def: "A distal interphalangeal joint that is part of a digit 4." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal interphalangeal joint 4" RELATED [] synonym: "distal interphalangeal joint of digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: NCIT:C102293 @@ -333275,6 +348565,8 @@ relationship: part_of UBERON:0006051 ! digit 4 id: UBERON:0014680 name: distal interphalangeal joint of digit 5 def: "A distal interphalangeal joint that is part of a digit 5." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal interphalangeal joint 5" RELATED [] synonym: "distal interphalangeal joint of digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] xref: NCIT:C102294 @@ -333287,6 +348579,8 @@ relationship: part_of UBERON:0006052 ! digit 5 id: UBERON:0014682 name: tooth whorl def: "A spirally arranged cluster of teeth." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "spiral tooth cluster" NARROW [] synonym: "tooth spiral" EXACT [] synonym: "whorl of teeth" EXACT [] @@ -333298,6 +348592,8 @@ relationship: present_in_taxon NCBITaxon:8287 ! Sarcopterygii id: UBERON:0014683 name: parasymphisial tooth whorl def: "A tooth whorl located at or near the mandibular symphysis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "parasymphisial tooth spiral" EXACT [] synonym: "parasymphysical tooth spiral" EXACT [] is_a: UBERON:0009679 ! set of lower jaw teeth @@ -333309,6 +348605,8 @@ relationship: present_in_taxon NCBITaxon:8287 ! Sarcopterygii id: UBERON:0014684 name: Helicoprion tooth whorl def: "A tooth whorl found in extinct holocephalids, in which the teeth in the center of the spiral are smallest and oldest, probably occupying the entire mandibular arch." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Helicoprion#Nature_of_the_tooth_whorl] +subset: human_subset +subset: mouse_subset is_a: UBERON:0009679 ! set of lower jaw teeth is_a: UBERON:0014682 ! tooth whorl relationship: part_of UBERON:0003278 ! skeleton of lower jaw @@ -333319,6 +348617,8 @@ id: UBERON:0014685 name: pterygoid plexus def: "The pterygoid plexus is a venous plexus of considerable size, and is situated between the temporalis muscle and lateral pterygoid muscle, and partly between the two pterygoid muscles." [Wikipedia:Pterygoid_plexus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "middle meningeal vein" RELATED [Wikipedia:Pterygoid_plexus] synonym: "plexus pterygoideus" RELATED OMO:0003011 [Wikipedia:Pterygoid_plexus] synonym: "plexus venosus pterygoideus" EXACT OMO:0003011 [FMA:TA] @@ -333338,6 +348638,8 @@ id: UBERON:0014686 name: angular vein def: "The angular vein formed by the junction of the frontal vein and supraorbital vein, runs obliquely downward, on the side of the root of the nose, to the level of the lower margin of the orbit, where it becomes the anterior facial vein. It receives the external nasal veins of the ala nasi, and communicates with the superior ophthalmic vein through the nasofrontal vein, thus establishing an important anastomosis between the anterior facial vein and the cavernous sinus." [Wikipedia:Angular_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:50893 xref: SCTID:151804007 xref: Wikipedia:Angular_vein @@ -333352,6 +348654,8 @@ relationship: tributary_of UBERON:0001653 ! facial vein id: UBERON:0014687 name: temporal sulcus def: "Any of three grooves in the temporal lobe including the inferior, middle, and superior temporal sulci." [ncithesaurus:Temporal_Sulcus] +subset: human_subset +subset: mouse_subset synonym: "temporal lobe sulci" EXACT OMO:0003004 [HBA:TLs] synonym: "temporal lobe sulcus" EXACT [] xref: HBA:9377 @@ -333366,6 +348670,8 @@ relationship: part_of UBERON:0001871 ! temporal lobe id: UBERON:0014689 name: middle temporal sulcus def: "A groove or cleft that divides the outer surface of the temporal lobe running in the same direction but at a lower level to the superior temporal sulcus." [ncithesaurus:Middle_Temporal_Sulcus] +subset: human_subset +subset: mouse_subset synonym: "middle (medial) temporal sulcus" RELATED [BAMS:mts] xref: BAMS:mts xref: HBA:10150 @@ -333381,6 +348687,8 @@ id: UBERON:0014690 name: left gastric vein def: "The Left gastric vein (or coronary vein) carries blood low in Oxygen, tributaries derived from both surfaces of the stomach; it runs from right to left along the lesser curvature of the stomach, between the two layers of the lesser omentum, to the esophageal opening of the stomach, where it receives some esophageal veins. It then turns backward and passes from left to right behind the omental bursa and drains into the portal vein. Esophageal and paraesophageal varices are primarily supplied by the left gastric vein and typically drain into the azygos/hemiazygos venous system." [Wikipedia:Left_gastric_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "coronary vein" RELATED [Wikipedia:Left_gastric_vein] synonym: "vena gastrica sinistra" EXACT OMO:0003011 [Wikipedia:Left_gastric_vein] xref: FMA:15399 @@ -333399,6 +348707,8 @@ id: UBERON:0014691 name: right gastric vein def: "The right gastric vein, also known as the pyloric vein, drains blood from the lesser curvature of the stomach into the hepatic portal vein. It is part of the portal circulation." [Wikipedia:Right_gastric_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "pyloric vein" RELATED [Wikipedia:Right_gastric_vein] synonym: "vena gastrica dextra" EXACT OMO:0003011 [Wikipedia:Right_gastric_vein] xref: FMA:15400 @@ -333417,6 +348727,8 @@ id: UBERON:0014692 name: superficial epigastric vein def: "The superficial epigastric vein is a vein which travels with the superficial epigastric artery. It joins the accessory saphenous vein near the fossa ovalis." [Wikipedia:Superficial_epigastric_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:44318 xref: SCTID:286971006 xref: Wikipedia:Superficial_epigastric_vein @@ -333428,6 +348740,8 @@ relationship: tributary_of UBERON:0001363 ! great saphenous vein id: UBERON:0014693 name: inferior alveolar artery subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:49695 xref: SCTID:276151008 is_a: UBERON:0009654 ! alveolar artery @@ -333439,6 +348753,8 @@ id: UBERON:0014694 name: posterior auricular artery def: "The posterior auricular artery is a small artery and arises from the external carotid artery, above the Digastric muscle and Stylohyoid muscle, opposite the apex of the styloid process. It ascends posteriorly beneath the parotid gland, along the styloid process of the temporal bone, between the cartilage of the ear and the mastoid process of the temporal bone along the lateral side of the head. The posterior auricular artery supplies blood to the scalp posterior to the auricle and to the auricle itself." [Wikipedia:Posterior_auricular_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:49624 xref: SCTID:244220004 xref: Wikipedia:Posterior_auricular_artery @@ -333453,6 +348769,8 @@ id: UBERON:0014695 name: deep auricular artery def: "The deep auricular artery often arises in common with the anterior tympanic artery. It ascends in the substance of the parotid gland, behind the temporomandibular articulation, pierces the cartilaginous or bony wall of the external acoustic meatus, and supplies its cuticular lining and the outer surface of the tympanic membrane. It gives a branch to the temporomandibular joint." [Wikipedia:Deep_auricular_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:49689 xref: SCTID:147157007 xref: Wikipedia:Deep_auricular_artery @@ -333469,6 +348787,8 @@ id: UBERON:0014696 name: anterior choroidal artery def: "The anterior choroidal artery originates from the internal carotid artery, though it also rarely arises from the middle cerebral artery." [Wikipedia:Anterior_choroidal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "anterior choroidal" RELATED [Wikipedia:Anterior_choroidal_artery] xref: FMA:50087 xref: NCIT:C32083 @@ -333482,6 +348802,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0014697 name: posterior choroidal artery +subset: human_subset +subset: mouse_subset xref: FMA:50657 xref: NCIT:C33352 xref: SCTID:369342007 @@ -333495,6 +348817,8 @@ relationship: part_of UBERON:0001636 {source="FMA"} ! posterior cerebral artery [Term] id: UBERON:0014698 name: lacrimal caruncle +subset: human_subset +subset: mouse_subset synonym: "caruncula lacrimalis" EXACT OMO:0003011 [FMA:TA] xref: FMA:77672 xref: SCTID:362530000 @@ -333504,6 +348828,8 @@ is_a: UBERON:0010305 {source="FMA"} ! subdivision of conjunctiva id: UBERON:0014699 name: extraembryonic venous system def: "A venous system that overlaps a umbilical cord and is part of a entire extraembryonic component." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000479 xref: EMAPA:16374 xref: VHOG:0000282 @@ -333519,6 +348845,8 @@ relationship: part_of UBERON:0016887 ! entire extraembryonic component id: UBERON:0014701 name: extraembryonic vascular system def: "A vascular system that overlaps a umbilical cord and is part of a entire extraembryonic component." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000478 xref: EMAPA:16370 xref: VHOG:0001396 @@ -333533,6 +348861,8 @@ relationship: part_of UBERON:0016887 ! entire extraembryonic component id: UBERON:0014702 name: frontonasal process epithelium def: "An epithelium that is part of a frontonasal prominence." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004108 xref: EMAPA:32918 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium @@ -333547,6 +348877,8 @@ relationship: part_of UBERON:0004066 ! frontonasal prominence id: UBERON:0014703 name: anal membrane ectodermal component def: "A unilaminar epithelium that develops_from a ectoderm and is part of a anal region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004019 xref: EMAPA:25040 is_a: UBERON:0000490 ! unilaminar epithelium @@ -333561,6 +348893,8 @@ relationship: part_of UBERON:0001353 ! anal region id: UBERON:0014704 name: pleuroperitoneal canal lumen def: "An anatomical space that is enclosed by a pleuroperitoneal canal." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pleuro-peritoneal canal cavity" EXACT [EMAPA:25034] xref: EHDAA2:0004736 xref: EMAPA:25034 @@ -333575,6 +348909,8 @@ relationship: part_of UBERON:0006279 ! pleuroperitoneal canal id: UBERON:0014705 name: median lingual swelling epithelium def: "An epithelium that is part of a median lingual swelling." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "tuberculum impar epitheilium" RELATED [EMAPA:17188] xref: EHDAA2:0001085 xref: EMAPA:17188 @@ -333590,6 +348926,8 @@ relationship: part_of UBERON:0006756 ! median lingual swelling [Term] id: UBERON:0014706 name: primitive renal collecting duct system +subset: human_subset +subset: mouse_subset synonym: "metanephros primitive collecting ducts" EXACT [EHDAA2:0001147] synonym: "primitive collecting duct" EXACT [EMAPA:17646] xref: EHDAA2:0001147 @@ -333655,6 +348993,8 @@ id: UBERON:0014716 name: interlobular duct def: "A duct that is located between lobules, within the thin connective tissue septa that separate lobules. All interlobular ducts are excretory." [ncithesaurus:Interlobular_Duct] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: NCIT:C32828 xref: UMLS:C1512857 xref: Wikipedia:Interlobular_ducts @@ -333671,6 +349011,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0014717 name: mucous acinus def: "The secretory unit of a mucous gland. The acinar portion is composed of mucous secreting cells." [http://orcid.org/0000-0002-6601-2165, http://www.siumed.edu/~dking2/intro/glands.htm] +subset: human_subset +subset: mouse_subset synonym: "acinus of mucuous gland" EXACT [] synonym: "mucus acinus" EXACT [] xref: FMA:86278 @@ -333685,6 +349027,8 @@ id: UBERON:0014719 name: intralobular duct def: "A duct that is located within a lobule, with no more connective tissue intervening between ducts and secretory units (i.e., acini or tubules) than between adjacent secretory units. Intercalated and striated ducts are intralobular." [http://www.siumed.edu/~dking2/intro/glands.htm] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "intralobular ductule" RELATED [] xref: SCTID:205214009 is_a: UBERON:0000058 ! duct @@ -333697,6 +349041,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0014720 name: interlobar duct def: "A duct that is located between lobes, within conspicuous, thick connective tissue septa that separate lobes. All interlobar ducts are excretory." [http://www.siumed.edu/~dking2/intro/glands.htm] +subset: human_subset +subset: mouse_subset synonym: "intralobular ductule" RELATED [] is_a: UBERON:0035050 ! excretory duct intersection_of: UBERON:0000058 ! duct @@ -333709,6 +349055,8 @@ relationship: part_of UBERON:0002384 ! connective tissue id: UBERON:0014725 name: intercalated duct def: "A small duct which drains individual secretory units. These are usually inconspicuous, lined by a simple epithelium consisting of low cuboidal cells." [http://www.siumed.edu/~dking2/intro/glands.htm] +subset: human_subset +subset: mouse_subset synonym: "secretory duct" RELATED [] xref: NCIT:C32820 xref: UMLS:C1512817 @@ -333719,6 +349067,8 @@ id: UBERON:0014726 name: intercalated duct of pancreas def: "An intercalated duct that is part of a pancreas." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ductus intercalatus (pancreas)" EXACT [FMA:16013] synonym: "pancreatic ductule" EXACT [FMA:16013] xref: FMA:16013 @@ -333734,6 +349084,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0014727 name: intercalated duct of salivary gland def: "The tiny tubules with a very thin epithelial layer in the salivary glands running from the salivary acini into the striated duct." [ncithesaurus:Intercalated_Duct_of_the_Salivary_Gland_System] +subset: human_subset +subset: mouse_subset xref: FMA:60050 xref: NCIT:C49266 is_a: UBERON:0001837 ! duct of salivary gland @@ -333747,6 +349099,8 @@ property_value: function_notes "secretes bicarbonate, absorbs Cl-" xsd:string id: UBERON:0014729 name: striated duct of salivary gland def: "Gland duct which connects an intercalated duct to an interlobular duct in a salivary gland." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Striated_duct] +subset: human_subset +subset: mouse_subset xref: FMA:60051 xref: NCIT:C33635 xref: UMLS:C1514993 @@ -333762,6 +349116,8 @@ relationship: connects UBERON:0014727 ! intercalated duct of salivary gland id: UBERON:0014730 name: osteon def: "A circular structural unit of bone tissue. It consists of a central hole, the Haversian canal through which blood vessels run, surrounded by concentric rings, called lamellae." [MESH:A10.165.265.507] +subset: human_subset +subset: mouse_subset synonym: "bone matrix" RELATED [Wikipedia:Osteon] synonym: "haversian canal" RELATED [MESH:A10.165.265.507] synonym: "haversian system" EXACT [FMA:32693] @@ -333783,6 +349139,8 @@ relationship: part_of UBERON:0002481 ! bone tissue id: UBERON:0014731 name: haversian canal def: "Haversian canals are a series of tubes around narrow channels formed by lamellae. This is the region of bone called compact bone. Osteons are arranged in parallel to the long axis of the bone. The Haversian canals surround blood vessels and nerve cells throughout the bone and communicate with osteocytes in lacunae (spaces within the dense bone matrix that contain the living bone cells) through canaliculi. This unique arrangement is conducive to mineral salt deposits and storage which gives bone tissue its strength." [Wikipedia:Haversian_canal] +subset: human_subset +subset: mouse_subset synonym: "haversian canals" RELATED [Wikipedia:Haversian_canal] synonym: "nutrient canal" RELATED [MESH:A10.165.265.507] xref: FMA:224787 @@ -333800,6 +349158,8 @@ id: UBERON:0014732 name: compound cell cluster organ def: "An anatomical structure consisting of multiple cell cluster organs, that has a largely bona-fide boundary and that does not contain portions of tissue." [CARO:0010002] comment: Examples: compound eye; Johnston's organ. +subset: human_subset +subset: mouse_subset subset: upper_level xref: CARO:0010002 xref: FBbt:00007230 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} @@ -333825,6 +349185,8 @@ id: UBERON:0014734 name: allocortex def: "One of two types of cerebral cortex defined on the basis of cytoarchitecture and fetal development. The other is neocortex. Allocortex does not pass through a prenatal phase of six-layered structure and has three or four layers in the mature brain ( Schiebler-1999 ). Allocortex has three subtypes: paleocortex, archicortex and periallocortex. This definition differs from that in some older sources, which excluded the olfactory bulb and the accessory olfactory bulb ( Carpenter-1983 )." [NeuroNames:759] comment: The allocortex is composed of hippocampal and olfactory structures, which usually display three-layered organization[Brainspan] +subset: human_subset +subset: mouse_subset synonym: "allocortex (Stephan)" RELATED [NeuroNames:1598] synonym: "heterogenetic cortex" RELATED [NeuroNames:1598] synonym: "heterogenetic formations" RELATED [NeuroNames:1598] @@ -333845,6 +349207,8 @@ relationship: part_of UBERON:0000956 ! cerebral cortex id: UBERON:0014735 name: paleocortex def: "Part of the allocortex defined on the basis of cytoarchitecture. The other two are archicortex and periallocortex. It consists of very thin, primitive cortex with few clearly defined layers. It is distinguished ontogenetically by the fact that it does not develop through a cortical plate. It includes the olfactory bulb, accessory olfactory bulb, olfactory tubercle, septum, prepyriform area and periamygdalar area ( Stephan-1975 ). (adapted from Brain Info)." [NLX:143559] +subset: human_subset +subset: mouse_subset synonym: "palaeocortex" EXACT OMO:0003011 [FMA:62430, FMA:TA] synonym: "paleocortex" RELATED [NeuroNames:2336] synonym: "paleocortex (semicortex)" EXACT [DHBA:10306] @@ -333863,6 +349227,8 @@ property_value: location_notes "Paleocortex is present in the parahippocampal gy id: UBERON:0014736 name: periallocortex def: "Agranular cortical structures located next to the allocortex." [BRAINSPAN:BRAINSPAN] +subset: human_subset +subset: mouse_subset synonym: "periallocortex" EXACT [NeuroNames:2315] xref: DHBA:10313 xref: neuronames:2315 @@ -333874,6 +349240,8 @@ relationship: part_of UBERON:0000956 ! cerebral cortex id: UBERON:0014738 name: medial pallium def: "Subdivision of pallium that is located is the medial position in vertebrates with an evaginated brain and in the distal position in vertebrates with an everted brain." [ISBN:0471888893] +subset: human_subset +subset: mouse_subset synonym: "area dorsalis telencephali, zona medialis" RELATED [] synonym: "distal pallium (everted brain)" RELATED [ISBN:0471888893] synonym: "hippocampal pallium" RELATED [ISBN:0471888893] @@ -333893,6 +349261,8 @@ property_value: homology_notes "The pallium of vertebrates have 3 major division id: UBERON:0014740 name: dorsal pallium def: "Subdivision of pallium that is located dorsally." [ISBN:0471888893] +subset: human_subset +subset: mouse_subset synonym: "area dorsalis telencephali, zona dorsalis" EXACT [] synonym: "dorsal zone of D" RELATED [] synonym: "dorsal zone of dorsal telencephalic area" EXACT [] @@ -333908,6 +349278,8 @@ property_value: homology_notes "The pallium of vertebrates have 3 major division id: UBERON:0014741 name: lateral pallium def: "Subdivision of pallium that is located laterally." [ISBN:0471888893] +subset: human_subset +subset: mouse_subset synonym: "area dorsalis telencephali, zona lateralis" EXACT [] synonym: "lateral zone of D" EXACT [] synonym: "lateral zone of dorsal telencephalic area" EXACT [] @@ -333979,6 +349351,8 @@ relationship: part_of UBERON:0000203 ! pallium id: UBERON:0014756 name: Wulst def: "A nuclear complex in the avian telecephalon dorsal to the DVR. The Wulst has telencephalic circuitry similar to the DVR." [PMID:23027930] +subset: human_subset +subset: mouse_subset is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0011300 ! gray matter of telencephalon relationship: part_of UBERON:0000203 ! pallium @@ -334016,6 +349390,8 @@ relationship: part_of UBERON:0000203 ! pallium id: UBERON:0014760 name: gustatory nucleus def: "The gustatory nucleus is the enlarged rostral portion of the solitary nucleus, which receives taste afferents from the glossopharyngeal nerve and the intermediate nerve ( Carpenter-1983 )." [NeuroNames:1386] +subset: human_subset +subset: mouse_subset synonym: "dorsal visceral gray" RELATED [NeuroNames:1386] synonym: "gustatory gray" RELATED [NeuroNames:1386] synonym: "gustatory nucleus" RELATED [NeuroNames:1386] @@ -334028,6 +349404,8 @@ relationship: part_of UBERON:0001033 ! gustatory system id: UBERON:0014761 name: spinal trigeminal tract def: "Brainstem tract formed by the central processes of first-order, trigeminal ganglion neurons that extends from the caudal medulla to the midpons. This tract conveys nociceptive and thermal information from the face to second-order neurons in the spinal nucleus of the trigeminal complex." [BTO:0003701, http://www.sylvius.com/] +subset: human_subset +subset: mouse_subset synonym: "descending root of V" RELATED [NeuroNames:1589] synonym: "descending tract of trigeminal" RELATED [NeuroNames:1589] synonym: "spinal root of trigeminal" RELATED [NeuroNames:1589] @@ -334055,23 +349433,27 @@ relationship: part_of UBERON:0002298 {source="BTO"} ! brainstem id: UBERON:0014762 name: fused metapodial bones 2-4 def: "An element formed from the fusion of metapodium bones 2, 3 and 4 (i.e. either metatarsals 2-4 or metacarpals 3-4)." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "fused central metapodials" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "fused metapodials 2-4" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "metapodial 2+3+4" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0013586 ! fused metapodial bones 3 and 4 intersection_of: UBERON:0003821 ! metapodium bone -intersection_of: derived_from_ancestral_fusion_of UBERON:0013582 ! metapodium bone 2 -intersection_of: derived_from_ancestral_fusion_of UBERON:0013583 ! metapodium bone 3 -intersection_of: derived_from_ancestral_fusion_of UBERON:0013584 ! metapodium bone 4 -relationship: derived_from_ancestral_fusion_of UBERON:0013582 ! metapodium bone 2 -relationship: derived_from_ancestral_fusion_of UBERON:0013583 ! metapodium bone 3 -relationship: derived_from_ancestral_fusion_of UBERON:0013584 ! metapodium bone 4 +intersection_of: has_fused_element UBERON:0013582 ! metapodium bone 2 +intersection_of: has_fused_element UBERON:0013583 ! metapodium bone 3 +intersection_of: has_fused_element UBERON:0013584 ! metapodium bone 4 +relationship: has_fused_element UBERON:0013582 ! metapodium bone 2 +relationship: has_fused_element UBERON:0013583 ! metapodium bone 3 +relationship: has_fused_element UBERON:0013584 ! metapodium bone 4 relationship: present_in_taxon NCBITaxon:51337 ! Jaculus jaculus [Term] id: UBERON:0014763 name: fused metatarsal bones 2-4 def: "An element formed from the fusion of metapodium bones 2, 3 and 4 in the pedal autopod." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "cannon bone" RELATED [NCBITaxon:51337] synonym: "fused central metatarsals" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "fused metatarsals 2-4" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -334079,15 +349461,15 @@ synonym: "metatarsal 2+3+4" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0013588 ! fused metatarsal bones 3 and 4 is_a: UBERON:0014762 ! fused metapodial bones 2-4 intersection_of: UBERON:0001448 ! metatarsal bone -intersection_of: derived_from_ancestral_fusion_of UBERON:0003651 ! metatarsal bone of digit 2 -intersection_of: derived_from_ancestral_fusion_of UBERON:0003652 ! metatarsal bone of digit 3 -intersection_of: derived_from_ancestral_fusion_of UBERON:0003653 ! metatarsal bone of digit 4 -relationship: derived_from_ancestral_fusion_of UBERON:0003651 ! metatarsal bone of digit 2 -relationship: derived_from_ancestral_fusion_of UBERON:0003652 ! metatarsal bone of digit 3 -relationship: derived_from_ancestral_fusion_of UBERON:0003653 ! metatarsal bone of digit 4 +intersection_of: has_fused_element UBERON:0003651 ! metatarsal bone of digit 2 +intersection_of: has_fused_element UBERON:0003652 ! metatarsal bone of digit 3 +intersection_of: has_fused_element UBERON:0003653 ! metatarsal bone of digit 4 relationship: has_developmental_contribution_from UBERON:0003651 {gci_filler="NCBITaxon:51337", gci_relation="part_of", source="PMID:22135653"} ! metatarsal bone of digit 2 relationship: has_developmental_contribution_from UBERON:0003652 {gci_filler="NCBITaxon:51337", gci_relation="part_of", source="PMID:22135653"} ! metatarsal bone of digit 3 relationship: has_developmental_contribution_from UBERON:0003653 {gci_filler="NCBITaxon:51337", gci_relation="part_of", source="PMID:22135653"} ! metatarsal bone of digit 4 +relationship: has_fused_element UBERON:0003651 ! metatarsal bone of digit 2 +relationship: has_fused_element UBERON:0003652 ! metatarsal bone of digit 3 +relationship: has_fused_element UBERON:0003653 ! metatarsal bone of digit 4 relationship: present_in_taxon NCBITaxon:51337 ! Jaculus jaculus property_value: taxon_notes "The cannon bone of the 3-toed jerboa (jaculus jaculus) is the postnatal fusion of the 3 central metatarsals, which are distinct ossified elements prenatally" xsd:string {source="PMID:22135653", taxon="NCBITaxon:51337"} @@ -334095,6 +349477,8 @@ property_value: taxon_notes "The cannon bone of the 3-toed jerboa (jaculus jacul id: UBERON:0014764 name: anatomical line along groove def: "Anatomical line that delineates a furrow or depression in an organ or tissue." [https://github.com/obophenotype/human-developmental-anatomy-ontology/issues/4, ZFA:0001690] +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "groove" RELATED [ZFA:0001690] synonym: "line delineating groove" EXACT [] @@ -334112,6 +349496,8 @@ id: UBERON:0014765 name: crus of diaphragm def: "The domain of the diaphragm that is located dorsally and attaches to the vertebrae and surrounds the esophagus and aorta." [PMID:23586979] comment: Classification notes: May be considered an external sphincter[PMID:8224664] +subset: human_subset +subset: mouse_subset synonym: "crura of the diaphragm" RELATED [Wikipedia:Crus_of_diaphragm] synonym: "crural diaphragm" EXACT [PMID:23586979] synonym: "crus of the diaphragm" RELATED [Wikipedia:Crus_of_diaphragm] @@ -334132,6 +349518,8 @@ relationship: part_of UBERON:0001103 {source="PMID:23586979"} ! diaphragm id: UBERON:0014766 name: right crus of diaphragm def: "A crus of diaphragm that is in_the_right_side_of a diaphragm." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "crus dextrum (Diaphragma)" EXACT OMO:0003011 [FMA:58286, FMA:TA] synonym: "crus dextrum diaphragmatis" EXACT OMO:0003011 [FMA:58286, FMA:TA] synonym: "external sphincter of esophagus" EXACT [FMA:58286] @@ -334150,6 +349538,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0014767 name: left crus of diaphragm def: "A crus of diaphragm that is in_the_left_side_of a diaphragm." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "crus sinistrum (Diaphragma)" EXACT OMO:0003011 [FMA:58287, FMA:TA] synonym: "crus sinistrum diaphragmatis" EXACT OMO:0003011 [FMA:58287, FMA:TA] synonym: "left crus of diaphragm" EXACT [FMA:58287] @@ -334168,6 +349558,8 @@ id: UBERON:0014768 name: superior palpebral vein def: "A blood vessel that drains from from an upper eyelid." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "venae palpebrales superiores" RELATED OMO:0003011 [] xref: FMA:50907 is_a: UBERON:0014769 ! palpebral vein @@ -334180,6 +349572,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0014769 name: palpebral vein def: "A blood vessel that drains from from an eyelid." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "palpebral veins" RELATED OMO:0003004 [] synonym: "venae palpebrales" RELATED OMO:0003011 [] xref: FMA:51997 @@ -334197,6 +349591,8 @@ relationship: tributary_of UBERON:0014686 ! angular vein id: UBERON:0014770 name: palpebral artery def: "An artery that supplies blood to an eyelid." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: SCTID:148571007 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel @@ -334212,6 +349608,8 @@ id: UBERON:0014772 name: lateral palpebral artery def: "The lateral palpebral arteries are small arteries which supply the eyelid." [Wikipedia:Lateral_palpebral_arteries] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lateral palpebral branch of ophthalmic artery" EXACT [FMA:49940] synonym: "lateral palpebral branches" RELATED [Wikipedia:Lateral_palpebral_arteries] xref: FMA:49940 @@ -334227,6 +349625,8 @@ id: UBERON:0014773 name: medial palpebral artery def: "The medial palpebral arteries (internal palpebral arteries) are arteries of the head. They are two in number, superior and inferior, arise from the ophthalmic, opposite the pulley of the Obliquus superior." [Wikipedia:Medial_palpebral_arteries] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "inferior palpebral artery" RELATED [Wikipedia:Medial_palpebral_arteries] synonym: "internal palpebral arteries" RELATED [Wikipedia:Medial_palpebral_arteries] synonym: "internal palpebral artery" RELATED [Wikipedia:Medial_palpebral_arteries] @@ -334244,6 +349644,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0014775 name: prosomere def: "A neuromere that is part of the presumptive forebrain." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "forebrain neuromere" EXACT [] synonym: "forebrain segment" BROAD [] synonym: "future prosencephalon" RELATED [] @@ -334258,6 +349660,8 @@ relationship: part_of UBERON:0006240 ! future forebrain id: UBERON:0014776 name: midbrain neuromere def: "A neuromere that is part of the presumptive midbrain." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "future mesencephalon" RELATED [] synonym: "mesomere" BROAD [] synonym: "mesomere group" RELATED [EHDAA2:0004352] @@ -334276,6 +349680,8 @@ relationship: part_of UBERON:0009616 ! presumptive midbrain id: UBERON:0014777 name: spinal neuromere def: "A neuromere that is part of the presumptive spinal cord." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "spinal cord metameric segment" EXACT [] synonym: "spinal cord segment" RELATED [TAO:0001332] synonym: "spinal neuromeres" EXACT OMO:0003004 [TAO:0001332] @@ -334291,6 +349697,8 @@ id: UBERON:0014778 name: cell group def: "A group of cells that may not be contained within macroscopic anatomical boundaries, e.g., A9 dopaminergic cell group; massa intercalata of the amygdala (CUMBO)." [NLX:532] subset: cumbo +subset: human_subset +subset: mouse_subset subset: upper_level synonym: "group of cells" EXACT [] is_a: UBERON:0000061 ! anatomical structure @@ -334301,6 +349709,8 @@ property_value: editor_note "consider adding to CARO." xsd:string id: UBERON:0014779 name: liver reticuloendothelial system def: "A reticuloendothelial system that is part of a liver." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: BTO:0000831 is_a: UBERON:0000363 ! reticuloendothelial system is_a: UBERON:0004119 ! endoderm-derived structure @@ -334312,6 +349722,8 @@ relationship: part_of UBERON:0002107 ! liver id: UBERON:0014780 name: palatine aponeurosis def: "Attached to the posterior border of the hard palate is a thin, firm fibrous lamella called the palatine aponeurosis, which supports the muscles and gives strength to the soft palate. It is thicker above than below, where it becomes very thin and difficult to define. Laterally it is continuous with the pharyngeal aponeurosis. It serves as the insertion for the Tensor veli palatini and Levator veli palatini, and the origin for the Musculus uvulae, Palatopharyngeus, and Palatoglossus. It provides support for the soft palate." [Wikipedia:Palatine_aponeurosis] +subset: human_subset +subset: mouse_subset synonym: "aponeurosis of tensor veli palatini" EXACT [FMA:49429] synonym: "aponeurosis palatina" EXACT [Wikipedia:Palatine_aponeurosis] xref: FMA:49429 @@ -334325,6 +349737,8 @@ relationship: part_of UBERON:0001733 ! soft palate [Term] id: UBERON:0014781 name: stomodeal ectoderm +subset: human_subset +subset: mouse_subset xref: BTO:0004224 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005291 ! embryonic tissue @@ -334335,6 +349749,8 @@ relationship: part_of UBERON:0000930 ! stomodeum id: UBERON:0014782 name: allantois of embryonic urinary system comment: remnant of allantois in embryo +subset: human_subset +subset: mouse_subset synonym: "allantois" RELATED [EHDAA2:0000113] xref: EHDAA2:0000113 xref: EMAPA:28547 @@ -334348,6 +349764,8 @@ relationship: part_of UBERON:0012361 {source="EHDAA2"} ! internal anal region id: UBERON:0014783 name: cloacal muscle def: "Any muscle organ that is part of a cloaca." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001630 ! muscle organ @@ -334358,6 +349776,8 @@ relationship: part_of UBERON:0000162 ! cloaca id: UBERON:0014784 name: transverse cloacal muscle def: "A very prominent superficial muscle and with its almost transverse course it forms the boundary between the abdomen and the tail." [DOI:10.1242/dev.01545] +subset: human_subset +subset: mouse_subset synonym: "m. transversus cloacae" EXACT [DOI:10.1242/dev.01545] synonym: "musculus transversus cloacae" EXACT [DOI:10.1242/dev.01545] is_a: UBERON:0014783 ! cloacal muscle @@ -334367,6 +349787,8 @@ relationship: part_of UBERON:0000162 ! cloaca id: UBERON:0014785 name: levator cloacae def: "A long narrow muscle arising from the underside of feather bulge of the lateral rectrices, inserting near the midline of the cloacal tubercle - phallus." [DOI:10.1242/dev.01545] +subset: human_subset +subset: mouse_subset synonym: "m. retractor phalli caudalis" EXACT [DOI:10.1242/dev.01545] synonym: "musculus levator cloacae" EXACT [DOI:10.1242/dev.01545] synonym: "musculus retractor phalli caudalis" EXACT [DOI:10.1242/dev.01545] @@ -334377,6 +349799,8 @@ relationship: part_of UBERON:0000162 ! cloaca id: UBERON:0014786 name: extraembryonic umbilical vein def: "Extraembryonic part of the vein passing through the umbilical cord to the fetus and returning the purified and nutrient blood from the placenta." [VHOG:0000015] +subset: human_subset +subset: mouse_subset synonym: "extraembryonic umbilical vein" EXACT [VHOG:0000015] xref: VHOG:0000015 is_a: UBERON:0001638 ! vein @@ -334389,6 +349813,8 @@ relationship: part_of UBERON:0014699 {source="EHDAA2"} ! extraembryonic venous s id: UBERON:0014787 name: left extraembryonic umbilical vein def: "An extraembryonic umbilical vein that is in_the_left_side_of a multicellular organism." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "extraembryonic umbilical vein left" EXACT [EHDAA2:0000938] xref: EHDAA2:0000938 is_a: UBERON:0014786 ! extraembryonic umbilical vein @@ -334402,6 +349828,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0014788 name: right extraembryonic umbilical vein def: "An extraembryonic umbilical vein that is in_the_right_side_of a multicellular organism." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "extraembryonic umbilical vein right" EXACT [EHDAA2:0001722] xref: EHDAA2:0001722 is_a: UBERON:0014786 ! extraembryonic umbilical vein @@ -334414,6 +349842,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero [Term] id: UBERON:0014789 name: embryo portion of umbilical vein +subset: human_subset +subset: mouse_subset synonym: "embryonic umbilical vein" EXACT [VHOG:0000400] xref: VHOG:0000400 is_a: UBERON:0001638 ! vein @@ -334424,6 +349854,8 @@ property_value: external_definition "Vein passing through the umbilical cord to id: UBERON:0014790 name: lingual septum def: "The lingual septum consists of a vertical layer of fibrous tissue, extending throughout the entire length of the median plane of the tongue, though not quite reaching the dorsum. It is thicker behind than in front, and occasionally contains a small fibrocartilage, about 6 mm. in length. It is well displayed by making a vertical section across the organ." [Wikipedia:Lingual_septum] +subset: human_subset +subset: mouse_subset synonym: "median fibrous septum" RELATED [Wikipedia:Lingual_septum] synonym: "septum of tongue" EXACT [FMA:54813] synonym: "septum of tongue" RELATED [Wikipedia:Lingual_septum] @@ -334441,6 +349873,8 @@ relationship: part_of UBERON:0001723 ! tongue id: UBERON:0014791 name: musculature of forelimb stylopod def: "Any collection of muscles that is part of the forelimb stylopod region [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "arm musculature" RELATED INCONSISTENT [FMA:50202] synonym: "muscle group of arm" RELATED INCONSISTENT [FMA:50202] synonym: "musculature of arm" RELATED INCONSISTENT [FMA:50202] @@ -334455,6 +349889,8 @@ relationship: part_of UBERON:0003822 ! forelimb stylopod id: UBERON:0014792 name: musculature of pelvic complex def: "Any collection of muscles that is part of a pelvic complex. The pelvic complex comprises the pelvic girdle and the associated limb or fin." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscles of lower limb" NARROW [FMA:71297] synonym: "musculature of lower limb" NARROW [FMA:71297] synonym: "musculi membri inferioris" NARROW [FMA:TA] @@ -334470,6 +349906,8 @@ property_value: editor_note "currently defined by location rather than attachmen id: UBERON:0014793 name: musculature of pectoral complex def: "Any collection of muscles that is part of a pectoral complex. The pectoral complex comprises the pectoral girdle and the associated limb or fin." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscles of upper limb" NARROW [FMA:71296] synonym: "musculature of upper limb" NARROW [FMA:71296] synonym: "musculi membri superioris" NARROW [FMA:TA] @@ -334487,6 +349925,8 @@ property_value: editor_note "currently defined by location rather than attachmen id: UBERON:0014794 name: pectoral appendage muscle def: "Any muscle organ that is part of a pectoral appendage (forelimb or pectoral fin)." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle intersection_of: UBERON:0014892 ! skeletal muscle organ, vertebrate intersection_of: part_of UBERON:0004710 ! pectoral appendage @@ -334497,6 +349937,8 @@ relationship: part_of UBERON:0007269 {source="prolog"} ! pectoral appendage musc id: UBERON:0014795 name: pelvic appendage muscle def: "Any muscle organ that is part of a pelvic appendage (hindlimb or pelvic fin)." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle intersection_of: UBERON:0014892 ! skeletal muscle organ, vertebrate intersection_of: part_of UBERON:0004709 ! pelvic appendage @@ -334507,6 +349949,8 @@ relationship: part_of UBERON:0007270 {source="prolog"} ! pelvic appendage muscul id: UBERON:0014796 name: common tendinous ring def: "A ring of fibrous tissue surrounding the optic nerve at its entrance at the apex of the orbit." [Wikipedia:Annulus_of_Zinn] +subset: human_subset +subset: mouse_subset synonym: "annulus of Zinn" RELATED [Wikipedia:Annulus_of_Zinn] synonym: "annulus tendineus communis" RELATED [Wikipedia:Annulus_of_Zinn] synonym: "anulus of Zinn" EXACT [FMA:49071] @@ -334530,6 +349974,8 @@ relationship: surrounds UBERON:0000941 ! cranial nerve II id: UBERON:0014797 name: hypobranchial group muscle def: "A jaw muscle that arises from trunk somites and is innervated by spinal nerves." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001630 ! muscle organ relationship: develops_from UBERON:0005598 {source="ISBN:0073040584"} ! trunk somite relationship: innervated_by UBERON:0001780 {source="ISBN:0073040584"} ! spinal nerve @@ -334539,6 +349985,8 @@ relationship: seeAlso UBERON:2002200 {comment="We follow Kardong in having a gen id: UBERON:0014798 name: clavotrapezius muscle def: "The most anterior of the trapezius muscles, found in felids, it is also the largest. Its fibers run obliquely to the ventral surface. Its origin is the superior nuchal line and median dorsal line and its insertion is the clavicle. Its action is to draw the clavicle dorsally and towards the head." [Wikipedia:Cat_anatomy#Clavotrapezius] +subset: human_subset +subset: mouse_subset synonym: "clavotrapezius" EXACT [] is_a: UBERON:0002380 ! trapezius muscle relationship: has_muscle_insertion UBERON:0001105 ! clavicle bone @@ -334549,6 +349997,8 @@ relationship: present_in_taxon NCBITaxon:9681 ! Felidae id: UBERON:0014799 name: acromiotrapezius muscle def: "Acromiotrapezius is the middle trapezius muscle. It covers the dorsal and lateral surfaces of the scapula. Its origin is the neural spines of the cervical vertebrae and its insertion is in the metacromion process and fascia of the clavotrapezius. Its action is to draw the scapula to the dorsal, and hold the two scapula together." [Wikipedia:Cat_anatomy#Acromiotrapezius] +subset: human_subset +subset: mouse_subset synonym: "acromiotrapezius" EXACT [] is_a: UBERON:0002380 ! trapezius muscle relationship: has_muscle_insertion UBERON:0014409 ! metacromion @@ -334559,6 +350009,8 @@ relationship: present_in_taxon NCBITaxon:9681 ! Felidae id: UBERON:0014800 name: spinotrapezius muscle def: "Spinotrapezius, also called thoracic trapezius, is the most posterior of the three trapezius muscles. It is triangular shaped. Posterior to the acromiotrapezius and overlaps latissimus dorsi on the front. Its origin is the neural spines of the thoracic vertebrae and its insertion is the scapular fascia. Its action is to draw the scapula to the dorsal and caudal regions." [Wikipedia:Cat_anatomy#Spinotrapezius] +subset: human_subset +subset: mouse_subset synonym: "spinotrapezius" EXACT [] synonym: "thoracic trapezius" EXACT [] synonym: "thoracic trapezius muscle" EXACT [] @@ -334572,6 +350024,8 @@ relationship: present_in_taxon NCBITaxon:9681 ! Felidae id: UBERON:0014801 name: nuchal line attachment site def: "Any of the four curved lines on the external surface of the occipital bone that serves as an attachment site for a muscle." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Nuchal_lines] +subset: human_subset +subset: mouse_subset synonym: "nuchal line" RELATED [Wikipedia:Nuchal_lines] xref: Wikipedia:Nuchal_lines is_a: UBERON:4200047 ! attachment site @@ -334582,6 +350036,8 @@ property_value: editor_note "in FMA this is modeled as an immaterial entity" xsd id: UBERON:0014802 name: highest nuchal line attachment site def: "Of the nuchal lines, the upper, often faintly marked, is named the highest nuchal line, but is sometimes referred to as the Mempin Line, and to it the galea aponeurotica is attached." [Wikipedia:Nuchal_lines] +subset: human_subset +subset: mouse_subset synonym: "highest nuchal line" RELATED [FMA:53106] synonym: "Mempin line" RELATED [Wikipedia:Nuchal_lines] xref: FMA:53106 @@ -334591,6 +350047,8 @@ is_a: UBERON:0014801 ! nuchal line attachment site id: UBERON:0014803 name: superior nuchal line attachment site def: "Of the nuchal lines, the one below the highest nuchal line is the superior nuchal line. To it is attached the Occipitalis muscle, the Splenius capitis muscle, the trapezius muscle, and the Sternocleidomastoid muscle." [Wikipedia:Nuchal_lines] +subset: human_subset +subset: mouse_subset synonym: "superior nuchal line" RELATED [FMA:53108] xref: FMA:53108 is_a: UBERON:0014801 ! nuchal line attachment site @@ -334599,6 +350057,8 @@ is_a: UBERON:0014801 ! nuchal line attachment site id: UBERON:0014804 name: median nuchal line attachment site def: "Of the nuchal lines, the one that runs from the external occipital protuberance a ridge or crest is the median nuchal line, often faintly marked, descends to the foramen magnum, and affords attachment to the ligamentum nuchae." [Wikipedia:Nuchal_lines] +subset: human_subset +subset: mouse_subset synonym: "inferior nuchal line" RELATED [FMA:53111] is_a: UBERON:0014801 ! nuchal line attachment site @@ -334606,6 +350066,8 @@ is_a: UBERON:0014801 ! nuchal line attachment site id: UBERON:0014805 name: inferior nuchal line attachment site def: "Of the nuchal lines, the one running from the middle of the median line is the inferior nuchal line. Attached are the Obliquus capitis superior muscle, Rectus capitis posterior major muscle, and Rectus capitis posterior minor muscle." [Wikipedia:Nuchal_lines] +subset: human_subset +subset: mouse_subset synonym: "inferior nuchal line" RELATED [FMA:53111] xref: FMA:53111 is_a: UBERON:0014801 ! nuchal line attachment site @@ -334613,6 +350075,8 @@ is_a: UBERON:0014801 ! nuchal line attachment site [Term] id: UBERON:0014835 name: serratus muscle +subset: human_subset +subset: mouse_subset synonym: "serratus" BROAD [] xref: EMAPA:35769 xref: MA:0003025 @@ -334623,6 +350087,8 @@ relationship: in_taxon NCBITaxon:7742 ! Vertebrata [Term] id: UBERON:0014836 name: levator arcuum muscle +subset: human_subset +subset: mouse_subset synonym: "levator arcuum" EXACT [] synonym: "levatores arcuum" EXACT [] is_a: UBERON:0004164 {source="ISBN:0073040584"} ! branchiomeric muscle @@ -334631,6 +350097,8 @@ is_a: UBERON:0004164 {source="ISBN:0073040584"} ! branchiomeric muscle id: UBERON:0014837 name: pectoantebrachialis def: "The most superficial of pectoral muscles, found in some mammals." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001495 {source="ISBN:0073040584"} ! pectoral muscle relationship: superficial_to UBERON:0002381 ! pectoralis major @@ -334638,6 +350106,8 @@ relationship: superficial_to UBERON:0002381 ! pectoralis major id: UBERON:0014838 name: xiphihumeralis def: "The most deep of pectoral muscles, found in some mammals." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001495 {source="ISBN:0073040584"} ! pectoral muscle relationship: deep_to UBERON:0001100 ! pectoralis minor @@ -334655,6 +350125,8 @@ relationship: has_muscle_origin UBERON:0004743 ! coracoid bone id: UBERON:0014842 name: puboischiofemoralis muscle def: "A dorsal muscle of lower tetrapods." [ISBN:0073040584] +subset: human_subset +subset: mouse_subset is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: has_muscle_insertion UBERON:0000981 {source="ISBN:0073040584"} ! femur relationship: has_muscle_origin UBERON:0007832 {source="ISBN:0073040584"} ! pelvic girdle skeleton @@ -334664,6 +350136,8 @@ id: UBERON:0014847 name: vastus intermedius def: "The Vastus intermedius (Cruraeus) arises from the front and lateral surfaces of the body of the femur in its upper two-thirds, sitting under Rectus Femoris and from the lower part of the lateral intermuscular septum. Its fibers end in a superficial aponeurosis, which forms the deep part of the Quadriceps femoris tendon. The Vastus medialis and Vastus intermedius appear to be inseparably united, but when the Rectus femoris has been reflected a narrow interval will be observed extending upward from the medial border of the patella between the two muscles, and the separation may be continued as far as the lower part of the intertrochanteric line, where, however, the two muscles are frequently continuous." [Wikipedia:Vastus_intermedius_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cruraeus" RELATED [Wikipedia:Vastus_intermedius_muscle] synonym: "crureus" RELATED [BTO:0002542] synonym: "intermediate great muscle" RELATED [BTO:0002542] @@ -334686,6 +350160,8 @@ property_value: external_definition "Origin: anterior and lateral surfaces of fe [Term] id: UBERON:0014848 name: tendon of quadriceps femoris +subset: human_subset +subset: mouse_subset synonym: "common quadriceps femoris tendon" RELATED [FMA:46900] synonym: "common quadriceps tendon" RELATED [FMA:46900] synonym: "common tendon of quadriceps femoris" EXACT [] @@ -334702,6 +350178,8 @@ relationship: part_of UBERON:0001377 {source="FMA"} ! quadriceps femoris id: UBERON:0014849 name: hemotrichorial placental membrane def: "A placental membrane that consists of three trophoblast cell layers." [http://orcid.org/0000-0002-6601-2165, MP:0012126] +subset: human_subset +subset: mouse_subset synonym: "placenta hemotrichorial membrane" EXACT [MP:0012126] xref: EMAPA:37879 {source="MA:th"} is_a: UBERON:0009002 ! placental membrane @@ -334712,6 +350190,8 @@ relationship: present_in_taxon NCBITaxon:9989 {source="MP"} ! Rodentia id: UBERON:0014850 name: hemomonochorial placental membrane def: "A placental membrane that consists of a single layer of syncytiotrophoblast at term." [http://orcid.org/0000-0002-6601-2165, MP:0012126] +subset: human_subset +subset: mouse_subset synonym: "placenta hemomonochorial membrane" EXACT [MP:0012126] is_a: UBERON:0009002 ! placental membrane relationship: has_part UBERON:0000371 ! syncytiotrophoblast @@ -334721,6 +350201,8 @@ relationship: present_in_taxon NCBITaxon:9606 {source="MP"} ! Homo sapiens id: UBERON:0014851 name: chorda tendinea of left ventricle def: "Chorda tendinea which is attached to the leaflet of mitral valve and is continuous with the endocardium of papillary muscle of left ventricle." [FMA:9349] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:9349 is_a: UBERON:0005994 ! chorda tendineae @@ -334732,6 +350214,8 @@ relationship: part_of UBERON:0002084 ! heart left ventricle id: UBERON:0014852 name: chorda tendinea of right ventricle def: "Chorda tendinea which is attached to the leaflet of tricuspid valve and is continuous with the endocardium of papillary muscle of right ventricle." [FMA:9300] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:9300 is_a: UBERON:0005994 ! chorda tendineae @@ -334743,6 +350227,8 @@ relationship: part_of UBERON:0002080 ! heart right ventricle id: UBERON:0014853 name: commissural leaflet of mitral valve def: "Leaflet of mitral valve which is attached to the commissural chorda tendinea of left ventricle." [FMA:223086] +subset: human_subset +subset: mouse_subset synonym: "commissural cusp of mitral valve" EXACT [FMA:223086] xref: FMA:223086 is_a: UBERON:0007151 {source="FMA"} ! mitral valve leaflet @@ -334751,6 +350237,8 @@ is_a: UBERON:0007151 {source="FMA"} ! mitral valve leaflet id: UBERON:0014854 name: anterior leaflet of mitral valve def: "Leaflet of mitral valve which is attached to the anterior head of the posterior papillary muscle of left ventricle through the chorda tendinea of the left ventricle." [FMA:7242] +subset: human_subset +subset: mouse_subset synonym: "anterior cusp of mitral valve" EXACT [FMA:7242] synonym: "anterior leaflet" BROAD [https://orcid.org/0000-0003-3308-6245] synonym: "anterior mitral leaflet" EXACT [FMA:7242] @@ -334770,6 +350258,8 @@ disjoint_from: UBERON:0014855 {source="lexical"} ! posterior leaflet of mitral v id: UBERON:0014855 name: posterior leaflet of mitral valve def: "Leaflet of mitral valve which is attached to the posterior head of the lateral papillary muscle of left ventricle through the chorda tendinea of the left ventricle." [FMA:7243] +subset: human_subset +subset: mouse_subset synonym: "cuspis posterior (valva mitralis)" EXACT OMO:0003011 [FMA:7243, FMA:TA] synonym: "cuspis posterior valvae atrioventricularis sinistri" EXACT OMO:0003011 [FMA:7243, FMA:TA] synonym: "mural leaflet of mitral valve" EXACT [FMA:7243] @@ -334879,6 +350369,8 @@ relationship: in_taxon NCBITaxon:7088 ! Lepidoptera id: UBERON:0014870 name: inferior orbital fissure def: "The orbital fissure that is situated inferiorly between the greater wing of the sphenoid bone and the maxilla." [http://www.merriam-webster.com/medical/orbital%20fissure] +subset: human_subset +subset: mouse_subset synonym: "infraorbital fissure" RELATED [] synonym: "sphenomaxillary fissure" RELATED [] xref: FMA:54802 @@ -334895,6 +350387,8 @@ relationship: connects UBERON:0006721 ! alisphenoid bone id: UBERON:0014871 name: distal epiphysis of distal phalanx of pedal digit 1 def: "A distal epiphysis that is part of a distal phalanx of pedal digit 1." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal end of distal phalanx of big toe" EXACT [FMA:33036] synonym: "distal epiphysis of distal phalanx of big toe" EXACT [FMA:33036] synonym: "distal epiphysis of distal phalanx of pedal digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -334912,6 +350406,8 @@ relationship: part_of UBERON:0004315 ! distal phalanx of pedal digit 1 id: UBERON:0014872 name: distal epiphysis of distal phalanx of pedal digit 2 def: "A distal epiphysis that is part of a distal phalanx of pedal digit 2." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal end of distal phalanx of second toe" EXACT [FMA:33045] synonym: "distal epiphysis of distal phalanx of pedal digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal epiphysis of distal phalanx of second toe" EXACT [FMA:33045] @@ -334927,6 +350423,8 @@ relationship: part_of UBERON:0004316 ! distal phalanx of pedal digit 2 id: UBERON:0014873 name: distal epiphysis of distal phalanx of pedal digit 3 def: "A distal epiphysis that is part of a distal phalanx of pedal digit 3." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal end of distal phalanx of third toe" EXACT [FMA:33054] synonym: "distal epiphysis of distal phalanx of pedal digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal epiphysis of distal phalanx of third toe" EXACT [FMA:33054] @@ -334943,6 +350441,8 @@ relationship: part_of UBERON:0004317 ! distal phalanx of pedal digit 3 id: UBERON:0014874 name: distal epiphysis of distal phalanx of pedal digit 4 def: "A distal epiphysis that is part of a distal phalanx of pedal digit 4." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal end of distal phalanx of fourth toe" EXACT [FMA:33091] synonym: "distal epiphysis of distal phalanx of fourth toe" EXACT [FMA:33091] synonym: "distal epiphysis of distal phalanx of pedal digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -334959,6 +350459,8 @@ relationship: part_of UBERON:0004318 ! distal phalanx of pedal digit 4 id: UBERON:0014875 name: distal epiphysis of distal phalanx of pedal digit 5 def: "A distal epiphysis that is part of a distal phalanx of pedal digit 5." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal end of distal phalanx of little toe" EXACT [FMA:33106] synonym: "distal epiphysis of distal phalanx of little toe" EXACT [FMA:33106] synonym: "distal epiphysis of distal phalanx of pedal digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -334975,6 +350477,8 @@ relationship: part_of UBERON:0004319 ! distal phalanx of pedal digit 5 [Term] id: UBERON:0014876 name: distal epiphysis of distal phalanx of pedal digit +subset: human_subset +subset: mouse_subset synonym: "distal end of distal phalanx of toe" EXACT [] synonym: "head of distal phalanx of digit of foot" EXACT [] synonym: "head of distal phalanx of digit of pes" EXACT [] @@ -334990,6 +350494,8 @@ relationship: part_of UBERON:0003867 ! distal phalanx of pes id: UBERON:0014881 name: distal epiphysis of distal phalanx of manual digit 1 def: "A distal epiphysis that is part of a distal phalanx of manual digit 1." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal end of phalanx of right thumb" EXACT [FMA:37609] synonym: "distal epiphysis of distal phalanx of manual digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "distal epiphysis of distal phalanx of thumb" EXACT [FMA:37609] @@ -335007,6 +350513,8 @@ relationship: part_of UBERON:0004337 ! distal phalanx of manual digit 1 id: UBERON:0014882 name: distal epiphysis of distal phalanx of manual digit 2 def: "A distal epiphysis that is part of a distal phalanx of manual digit 2." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal end of distal phalanx of index finger" EXACT [FMA:37621] synonym: "distal end of distal phalanx of second finger" EXACT [FMA:37621] synonym: "distal epiphysis of distal phalanx of index finger" EXACT [FMA:37621] @@ -335025,6 +350533,8 @@ relationship: part_of UBERON:0004311 ! distal phalanx of manual digit 2 id: UBERON:0014883 name: distal epiphysis of distal phalanx of manual digit 3 def: "A distal epiphysis that is part of a distal phalanx of manual digit 3." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal end of distal phalanx of middle finger" EXACT [FMA:37633] synonym: "distal end of distal phalanx of third finger" EXACT [FMA:37633] synonym: "distal epiphysis of distal phalanx of manual digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -335044,6 +350554,8 @@ relationship: part_of UBERON:0004312 ! distal phalanx of manual digit 3 id: UBERON:0014884 name: distal epiphysis of distal phalanx of manual digit 4 def: "A distal epiphysis that is part of a distal phalanx of manual digit 4." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal end of distal phalanx of fourth finger" EXACT [FMA:37645] synonym: "distal end of distal phalanx of ring finger" EXACT [FMA:37645] synonym: "distal epiphysis of distal phalanx of manual digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -335063,6 +350575,8 @@ relationship: part_of UBERON:0004313 ! distal phalanx of manual digit 4 id: UBERON:0014885 name: distal epiphysis of distal phalanx of manual digit 5 def: "A distal epiphysis that is part of a distal phalanx of manual digit 5." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal end of distal phalanx of fifth finger" EXACT [FMA:37657] synonym: "distal end of distal phalanx of little finger" EXACT [FMA:37657] synonym: "distal epiphysis of distal phalanx of little finger" EXACT [FMA:37657] @@ -335081,6 +350595,8 @@ relationship: part_of UBERON:0004314 ! distal phalanx of manual digit 5 [Term] id: UBERON:0014886 name: distal epiphysis of distal phalanx of manual digit +subset: human_subset +subset: mouse_subset synonym: "distal end of distal phalanx of finger" EXACT [] synonym: "head of distal phalanx of digit of hand" EXACT [] synonym: "head of distal phalanx of digit of manus" EXACT [] @@ -335097,6 +350613,8 @@ relationship: part_of UBERON:0003865 ! distal phalanx of manus id: UBERON:0014887 name: distal epiphysis of distal phalanx of digit def: "A distal epiphysis that is part of a distal phalanx." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal end of distal phalanx of digit" EXACT [] synonym: "head of distal phalanx" EXACT [] synonym: "head of distal phalanx of digit" EXACT [] @@ -335122,6 +350640,8 @@ relationship: part_of UBERON:0002103 ! hindlimb id: UBERON:0014889 name: left hemisphere of cerebellum def: "A cerebellar hemisphere that is in_the_left_side_of a cerebellum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:83877 is_a: UBERON:0002245 ! cerebellar hemisphere @@ -335134,6 +350654,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0014890 name: right hemisphere of cerebellum def: "A cerebellar hemisphere that is in_the_right_side_of a cerebellum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:83876 is_a: UBERON:0002245 ! cerebellar hemisphere @@ -335146,6 +350668,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0014891 name: brainstem white matter def: "White matter that is part of a brainstem [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "brain stem white matter" RELATED [EMAPA:35189] synonym: "brainstem tract/commissure" RELATED [] @@ -335165,6 +350689,8 @@ id: UBERON:0014892 name: skeletal muscle organ, vertebrate def: "A muscle organ that consists of skeletal muscle tissue ensheathed in epimysium, that develops from myotome and that is innervated by some somatic motor neuron. Skeletal muscles are typically attached (via a tendon) to a bone but there are exceptions (e.g. intrinsic tongue muscles)." [GOC:dos] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "skeletal muscle" BROAD [] xref: AAO:0011099 xref: BTO:0001103 @@ -335236,6 +350762,8 @@ relationship: composed_primarily_of CL:0008005 ! obliquely striated somatic musc id: UBERON:0014898 name: lamina terminalis of ischium def: "In those cases in which the interilial region is broadly expanded and the pubis is extremely reduced, the anterior margin of the ischium forms an expanded area." [AAO:0000881, AAO:LAP] +subset: human_subset +subset: mouse_subset xref: AAO:0000881 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ @@ -335245,6 +350773,8 @@ relationship: part_of UBERON:0001274 {source="AAO"} ! ischium id: UBERON:0014899 name: anterolateral ligament of knee def: "A ligament on the lateral aspect of the human knee, anterior to the fibular collateral ligament." [DOI:10.1111/joa.12087, Wikipedia:Anterolateral_ligament] +subset: human_subset +subset: mouse_subset synonym: "(mid-third) lateral capsular ligament" EXACT [DOI:10.1111/joa.12087] synonym: "ALL" EXACT OMO:0003000 [DOI:10.1111/joa.12087] synonym: "anterolateral ligament" EXACT [DOI:10.1111/joa.12087] @@ -335260,6 +350790,8 @@ relationship: part_of UBERON:0001485 ! knee joint id: UBERON:0014903 name: primordial vasculature def: "A portion of tissue that will develop into vasculature." [ZFA:0005076, ZFA:curator] +subset: human_subset +subset: mouse_subset xref: EFO:0003708 xref: TAO:0005076 xref: ZFA:0005076 @@ -335274,6 +350806,8 @@ id: UBERON:0014904 name: intersegmental pulmonary vein def: "A vein receiving blood from adjacent bronchopulmonary segments; it emerges from the inferior margin of a segment to become a tributary of a branch of a pulmonary vein." [http://www.medilexicon.com/medicaldictionary.php?t=97310] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "infrasegmental part" RELATED [http://www.medilexicon.com/medicaldictionary.php?s=infrasegmental+part] synonym: "infrasegmental part of pulmonary vein" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=infrasegmental+part] synonym: "intersegmental part of pulmonary vein" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=intersegmental+part+of+pulmonary+vein] @@ -335287,6 +350821,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0014907 name: intersomitic vessel def: "One of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites." [MGI:anna] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "intersegmental vessel" EXACT [ZFA:0001285] synonym: "intersegmental vessels" EXACT OMO:0003004 [ZFA:0001285] @@ -335306,6 +350842,8 @@ property_value: external_definition "Blood vessels that connect the dorsal aorta id: UBERON:0014908 name: cerebellopontine angle def: "Junction between the cerebellum and the pons." [MESH:A08.186.211.132.810.428.200.462] +subset: human_subset +subset: mouse_subset synonym: "angulus cerebellopontinus" RELATED OMO:0003011 [NeuroNames:544] synonym: "cerebellopontile angle" RELATED [MESH:A08.186.211.132.810.428.200.462] synonym: "cerebellopontine angle" RELATED [MESH:A08.186.211.132.810.428.200.462, NeuroNames:544] @@ -335323,6 +350861,8 @@ relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0014912 name: thalamic eminence +subset: human_subset +subset: mouse_subset synonym: "eminentia thalami" EXACT OMO:0003011 [ZFA:0007010] synonym: "EMT" BROAD OMO:0003000 [PMID:23375746] xref: FMA:295507 @@ -335337,6 +350877,8 @@ property_value: external_definition "Part of the forebrain that is ventral to th id: UBERON:0014913 name: ventral pallium def: "The pallial region located next to the pallium-subpallium boundary." [DOI:10.1371/journal.pone.0044716] +subset: human_subset +subset: mouse_subset synonym: "VP" BROAD OMO:0003000 [PMID:23375746] xref: DMBA:15904 is_a: UBERON:0002616 ! regional part of brain @@ -335347,6 +350889,8 @@ relationship: part_of UBERON:0000203 ! pallium id: UBERON:0014914 name: haemolymphatic fluid-testis barrier def: "A barrier between the blood or haemolymphatic fluid and the testes." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "blood testis barrier" NARROW [PMID:864819] xref: Wikipedia:Blood-testis_barrier is_a: UBERON:0000119 ! cell layer @@ -335360,6 +350904,8 @@ relationship: part_of UBERON:0000079 ! male reproductive system id: UBERON:0014915 name: genu of facial nerve def: "The bend in the facial nerve at the lateral end of the internal acoustic meatus." [http://medical-dictionary.thefreedictionary.com/genu+of+facial+nerve] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "first genu" BROAD [FMA:72510] synonym: "first genu" RELATED [NeuroNames:581] @@ -335386,6 +350932,8 @@ id: UBERON:0014916 name: velar vocal fold def: "On of a pair of medial protrusions of the intra-pharyngeal ostium (an oval opening within the soft palate that connects the oral and nasal portions of the pharynx), used in vocalization in Koalas." [DOI:10.1016/j.cub.2013.10.069] comment: Muscle notes: Because the larynx is attached to the caudal end of the pharynx where the IPO is situated, laryngeal retraction brought about by the sternothyroid muscle will automatically put tension on the rostro-caudally oriented velar vocal folds, and could also induce length changes of the folds. Contractions of the palatopharyngeal muscles may also influence the length and shape of the velar vocal folds directly (inducing width changes of the IPO). +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element is_a: UBERON:0015212 ! lateral structure @@ -335407,6 +350955,8 @@ relationship: part_of UBERON:0009118 ! marsupium [Term] id: UBERON:0014918 name: retrosplenial granular cortex +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "retrosplenial area, ventral part" RELATED [NeuroNames:1802] synonym: "retrosplenial cortex, ventral part" RELATED [NeuroNames:1802] @@ -335424,6 +350974,8 @@ id: UBERON:0014930 name: perivascular space def: "The space between a blood vessel and the pia mater." [DOI:10.1007/s11064-015-1581-6, ncithesaurus:Perivascular_Space] comment: VRS belonging to the subarachnoid space are continuous with VRS of the subpial space. The direct communication between VRS of the subarachnoid space and the subpial space is unique to the brain's arteries, as no leptomeningeal layers surround the brain's veins[WP] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "perivascular region" EXACT [] synonym: "perivascular spaces" RELATED OMO:0003004 [] @@ -335447,6 +350999,8 @@ property_value: depiction "https://static-content.springer.com/image/art%3A10.10 id: UBERON:0014931 name: periungual skin def: "A zone of skin adjacent to a nail or claw." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "periungual area" RELATED [] synonym: "periungual region" RELATED [] xref: SCTID:280418005 @@ -335457,6 +351011,8 @@ relationship: part_of UBERON:0002544 ! digit [Term] id: UBERON:0014932 name: periventricular white matter +subset: human_subset +subset: mouse_subset xref: SCTID:37065005 is_a: UBERON:0002316 ! white matter relationship: adjacent_to UBERON:0004086 ! brain ventricle @@ -335464,6 +351020,8 @@ relationship: adjacent_to UBERON:0004086 ! brain ventricle [Term] id: UBERON:0014933 name: periventricular gray matter +subset: human_subset +subset: mouse_subset synonym: "periventricular grey matter" EXACT [] xref: SCTID:89530008 is_a: UBERON:0003528 ! brain gray matter @@ -335480,6 +351038,8 @@ replaced_by: UBERON:0004040 id: UBERON:0014935 name: cerebral cortex marginal layer def: "Developing superficial cortical layer located just under the pia matter, develops from the marginal layer of the neural tube and becomes cortical layer I." [http://orcid.org/0000-0002-6601-2165, MP:0000792] +subset: human_subset +subset: mouse_subset synonym: "cerebral cortex marginal zone" RELATED [EMAPA:32713] synonym: "cortical marginal layer" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "cortical marginal zone" EXACT [MP:0000792] @@ -335498,6 +351058,8 @@ property_value: external_ontology_notes "EMAPA temporally divides this into zone [Term] id: UBERON:0014936 name: cerebral cortex ventricular layer +subset: human_subset +subset: mouse_subset synonym: "cerebral cortex ventricular zone" RELATED [EMAPA:32707] xref: EMAPA:17547 xref: EMAPA:32707 @@ -335508,6 +351070,8 @@ relationship: develops_from UBERON:0004060 ! neural tube ventricular layer [Term] id: UBERON:0014940 name: cerebral cortex subventricular zone +subset: human_subset +subset: mouse_subset synonym: "cerebral cortex subventricular zone" RELATED [] synonym: "SZ" BROAD OMO:0003000 [BRAINSPAN:BRAINSPAN] xref: EMAPA:32704 @@ -335518,6 +351082,8 @@ relationship: develops_from UBERON:0004040 ! cortical intermediate zone [Term] id: UBERON:0014950 name: layer of developing cerebral cortex +subset: human_subset +subset: mouse_subset is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000956 {source="EMAPA"} ! cerebral cortex property_value: curator_notes "these layers primarily refer to the mammalian future neocortex" xsd:string @@ -335526,6 +351092,8 @@ property_value: curator_notes "these layers primarily refer to the mammalian fut id: UBERON:0014951 name: proisocortex def: "The part of the neocortex hich mainly consists of parts of cingulate, parahippocampal and temporopolar cortice. As distinct from isocortex (typical neocortex) which contains other regions." [BRAINSPAN:BRAINSPAN] +subset: human_subset +subset: mouse_subset synonym: "intermediate belt" RELATED [NeuroNames:2311] synonym: "juxtallocortex" RELATED [NeuroNames:2311] synonym: "periisocortical belt" RELATED [NeuroNames:2311] @@ -335539,6 +351107,8 @@ relationship: part_of UBERON:0001950 ! neocortex id: UBERON:0015001 name: radius endochondral element def: "The major preaxial endrochondral skeletal element in the anterior zeugopod." [https://github.com/obophenotype/uberon/issues/70, UBERON:mah] +subset: human_subset +subset: mouse_subset synonym: "radius element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "radius skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015021 ! forelimb endochondral element @@ -335553,6 +351123,8 @@ property_value: dc:contributor https://github.com/mellybelly id: UBERON:0015002 name: radius-ulna endochondral element def: "A radius-ulna bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "radius-ulna element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "radius-ulna skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015021 ! forelimb endochondral element @@ -335566,6 +351138,8 @@ id: UBERON:0015003 name: ulna endochondral element def: "Major postaxial endrochondral skeletal element in the anterior zeugopod." [https://github.com/obophenotype/uberon/issues/70, UBERON:mah] comment: The corresponding element in the posterior fin/limb is the fibula. +subset: human_subset +subset: mouse_subset synonym: "ulna element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "ulna skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015021 ! forelimb endochondral element @@ -335580,6 +351154,8 @@ property_value: dc:contributor https://github.com/mellybelly id: UBERON:0015004 name: tibia endochondral element def: "The major preaxial endochondral element in the posterior zeugopod[Phenoscape]." [https://github.com/obophenotype/uberon/issues/71, PHENOSCAPE:mah] +subset: human_subset +subset: mouse_subset synonym: "tibia element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "tibia skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015022 ! hindlimb endochondral element @@ -335594,6 +351170,8 @@ property_value: dc:contributor https://github.com/mellybelly id: UBERON:0015007 name: cervical vertebra endochondral element def: "A vertebral endochondral element in the cervical region of the vertebral column." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "cervical vertebra element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "cervical vertebra skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0005174 ! dorsal region element @@ -335609,6 +351187,8 @@ relationship: part_of UBERON:0006072 ! cervical region of vertebral column id: UBERON:0015008 name: thoracic vertebra endochondral element def: "A vertebral endochondral element in the thoracic region of the vertebral column." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "thoracic vertebra element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "thoracic vertebra skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0005174 ! dorsal region element @@ -335625,6 +351205,8 @@ relationship: part_of UBERON:0006073 ! thoracic region of vertebral column id: UBERON:0015009 name: lumbar vertebra endochondral element def: "A lumbar vertebra bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "lumbar vertebra element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "lumbar vertebra skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0005173 ! abdominal segment element @@ -335641,6 +351223,8 @@ relationship: part_of UBERON:0006074 ! lumbar region of vertebral column id: UBERON:0015010 name: sacral vertebra endochondral element def: "A vertebra endochondral element that is part of the sacral region of the vertebral column." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "sacral vertebra element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "sacral vertebra skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0005174 ! dorsal region element @@ -335657,6 +351241,8 @@ relationship: part_of UBERON:0006075 ! sacral region of vertebral column id: UBERON:0015011 name: tibiotarsus endochondral element def: "A tibiotarsus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "tibiotarsus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "tibiotarsus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015022 ! hindlimb endochondral element @@ -335669,6 +351255,8 @@ relationship: part_of UBERON:0001441 ! hindlimb skeleton id: UBERON:0015012 name: tarsometatarsus endochondral element def: "A tarsometatarsus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "tarsometatarsus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "tarsometatarsus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015022 ! hindlimb endochondral element @@ -335682,6 +351270,8 @@ relationship: part_of UBERON:0001445 ! skeleton of pes id: UBERON:0015013 name: fibula endochondral element def: "The major postaxial endochondral element in the posterior zeugopod[Phenoscape]." [https://github.com/obophenotype/uberon/issues/73, PHENOSCAPE:mah] +subset: human_subset +subset: mouse_subset synonym: "fibula element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "fibula skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015022 ! hindlimb endochondral element @@ -335696,6 +351286,8 @@ property_value: dc:contributor https://github.com/mellybelly id: UBERON:0015014 name: calcaneum endochondral element def: "A calcaneum bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "calcaneum element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "calcaneum skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015050 ! tarsus endochondral element @@ -335708,6 +351300,8 @@ relationship: part_of UBERON:0009879 ! tarsal skeleton id: UBERON:0015015 name: supraoccipital endochondral element def: "A supraoccipital bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "supraoccipital element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "supraoccipital skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0010363 ! endochondral element @@ -335722,6 +351316,8 @@ relationship: part_of UBERON:0005902 ! occipital region id: UBERON:0015016 name: stapes endochondral element def: "A stapes bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "stapes element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "stapes skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0035130 ! auditory ossicle endochondral element @@ -335733,6 +351329,8 @@ union_of: UBERON:0010055 ! stapes cartilage element id: UBERON:0015017 name: incus endochondral element def: "An incus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "incus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "incus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0035130 ! auditory ossicle endochondral element @@ -335744,6 +351342,8 @@ union_of: UBERON:0007374 ! incus cartilage element id: UBERON:0015018 name: malleus endochondral element def: "A malleus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "malleus" RELATED [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "malleus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "malleus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] @@ -335756,6 +351356,8 @@ union_of: UBERON:0010054 ! malleus cartilage element id: UBERON:0015019 name: rib endochondral element def: "A rib bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "rib element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "rib skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0010363 ! endochondral element @@ -335775,6 +351377,8 @@ replaced_by: UBERON:0004637 id: UBERON:0015021 name: forelimb endochondral element def: "A forelimb bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "forelimb skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0010363 ! endochondral element @@ -335789,6 +351393,8 @@ relationship: part_of UBERON:0002102 ! forelimb id: UBERON:0015022 name: hindlimb endochondral element def: "A hindlimb bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "hindlimb bone skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0010363 ! endochondral element @@ -335803,6 +351409,8 @@ relationship: part_of UBERON:0002103 ! hindlimb id: UBERON:0015023 name: phalanx endochondral element def: "A phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015063 ! autopod endochondral element @@ -335816,6 +351424,8 @@ relationship: part_of UBERON:0012150 ! skeleton of digitopodium id: UBERON:0015024 name: manual digit phalanx endochondral element def: "A manual digit phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "manual digit phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015021 ! forelimb endochondral element @@ -335833,6 +351443,8 @@ relationship: part_of UBERON:5102389 ! manual digit digitopodial skeleton id: UBERON:0015025 name: manual digit 1 phalanx endochondral element def: "A manual digit 1 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "manual digit 1 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 1 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit I phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -335849,6 +351461,8 @@ relationship: part_of UBERON:5101463 ! manual digit 1 digitopodial skeleton id: UBERON:0015026 name: manual digit 2 phalanx endochondral element def: "A manual digit 2 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "manual digit 2 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 2 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit II phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -335865,6 +351479,8 @@ relationship: part_of UBERON:5103622 ! manual digit 2 digitopodial skeleton id: UBERON:0015027 name: manual digit 3 phalanx endochondral element def: "A manual digit 3 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "manual digit 3 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 3 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit III phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -335881,6 +351497,8 @@ relationship: part_of UBERON:5103623 ! manual digit 3 digitopodial skeleton id: UBERON:0015028 name: manual digit 4 phalanx endochondral element def: "A manual digit 4 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "manual digit 4 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 4 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit IV phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -335897,6 +351515,8 @@ relationship: part_of UBERON:5103624 ! manual digit 4 digitopodial skeleton id: UBERON:0015029 name: manual digit 5 phalanx endochondral element def: "A manual digit 5 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "manual digit 5 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 5 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit V phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -335913,6 +351533,8 @@ relationship: part_of UBERON:5103625 ! manual digit 5 digitopodial skeleton id: UBERON:0015030 name: pedal digit phalanx endochondral element def: "A pedal digit phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "pedal digit phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015022 ! hindlimb endochondral element @@ -335930,6 +351552,8 @@ relationship: part_of UBERON:5101466 ! pedal digit digitopodial skeleton id: UBERON:0015031 name: pedal digit 1 phalanx endochondral element def: "A pedal digit 1 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 1 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 1 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit I phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -335946,6 +351570,8 @@ relationship: part_of UBERON:5103631 ! pedal digit 1 digitopodial skeleton id: UBERON:0015032 name: pedal digit 2 phalanx endochondral element def: "A pedal digit 2 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 2 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 2 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit II phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -335962,6 +351588,8 @@ relationship: part_of UBERON:5103632 ! pedal digit 2 digitopodial skeleton id: UBERON:0015033 name: pedal digit 3 phalanx endochondral element def: "A pedal digit 3 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 3 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 3 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit III phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -335978,6 +351606,8 @@ relationship: part_of UBERON:5103633 ! pedal digit 3 digitopodial skeleton id: UBERON:0015034 name: pedal digit 4 phalanx endochondral element def: "A pedal digit 4 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 4 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 4 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit IV phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -335994,6 +351624,8 @@ relationship: part_of UBERON:5103634 ! pedal digit 4 digitopodial skeleton id: UBERON:0015035 name: pedal digit 5 phalanx endochondral element def: "A pedal digit 5 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 5 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 5 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit V phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -336010,6 +351642,8 @@ relationship: part_of UBERON:5103635 ! pedal digit 5 digitopodial skeleton id: UBERON:0015036 name: pedal digit metatarsal endochondral element def: "A pedal digit metatarsal bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "pedal digit metatarsal element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit metatarsal skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015022 ! hindlimb endochondral element @@ -336026,6 +351660,8 @@ relationship: part_of UBERON:0012152 ! skeleton of pedal digitopodium id: UBERON:0015037 name: pedal digit 1 metatarsal endochondral element def: "A pedal digit 1 metatarsal bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 1 metatarsal element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 1 metatarsal skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit I metatarsal endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -336041,6 +351677,8 @@ relationship: part_of UBERON:5103631 ! pedal digit 1 digitopodial skeleton id: UBERON:0015038 name: pedal digit 2 metatarsal endochondral element def: "A pedal digit 2 metatarsal bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 2 metatarsal element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 2 metatarsal skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit II metatarsal endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -336056,6 +351694,8 @@ relationship: part_of UBERON:5103632 ! pedal digit 2 digitopodial skeleton id: UBERON:0015039 name: pedal digit 3 metatarsal endochondral element def: "A pedal digit 3 metatarsal bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 3 metatarsal element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 3 metatarsal skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit III metatarsal endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -336071,6 +351711,8 @@ relationship: part_of UBERON:5103633 ! pedal digit 3 digitopodial skeleton id: UBERON:0015040 name: pedal digit 4 metatarsal endochondral element def: "A pedal digit 4 metatarsal bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 4 metatarsal element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 4 metatarsal skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit IV metatarsal endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -336086,6 +351728,8 @@ relationship: part_of UBERON:5103634 ! pedal digit 4 digitopodial skeleton id: UBERON:0015041 name: pedal digit 5 metatarsal endochondral element def: "A pedal digit 5 metatarsal bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 5 metatarsal element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit 5 metatarsal skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pedal digit V metatarsal endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -336101,6 +351745,8 @@ relationship: part_of UBERON:5103635 ! pedal digit 5 digitopodial skeleton id: UBERON:0015042 name: manual digit metacarpus endochondral element def: "A manual digit metacarpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "manual digit metacarpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit metacarpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015021 ! forelimb endochondral element @@ -336117,6 +351763,8 @@ relationship: part_of UBERON:0012151 ! skeleton of manual digitopodium id: UBERON:0015043 name: manual digit 1 metacarpus endochondral element def: "A manual digit 1 metacarpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "manual digit 1 metacarpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 1 metacarpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit I metacarpus endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -336132,6 +351780,8 @@ relationship: part_of UBERON:5101463 ! manual digit 1 digitopodial skeleton id: UBERON:0015044 name: manual digit 2 metacarpus endochondral element def: "A manual digit 2 metacarpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "manual digit 2 metacarpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 2 metacarpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit II metacarpus endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -336147,6 +351797,8 @@ relationship: part_of UBERON:5103622 ! manual digit 2 digitopodial skeleton id: UBERON:0015045 name: manual digit 3 metacarpus endochondral element def: "A manual digit 3 metacarpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "manual digit 3 metacarpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 3 metacarpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit III metacarpus endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -336162,6 +351814,8 @@ relationship: part_of UBERON:5103623 ! manual digit 3 digitopodial skeleton id: UBERON:0015046 name: manual digit 4 metacarpus endochondral element def: "A manual digit 4 metacarpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "manual digit 4 metacarpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 4 metacarpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit IV metacarpus endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -336177,6 +351831,8 @@ relationship: part_of UBERON:5103624 ! manual digit 4 digitopodial skeleton id: UBERON:0015047 name: manual digit 5 metacarpus endochondral element def: "A manual digit 5 metacarpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "manual digit 5 metacarpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit 5 metacarpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "manual digit V metacarpus endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -336192,6 +351848,8 @@ relationship: part_of UBERON:5103625 ! manual digit 5 digitopodial skeleton id: UBERON:0015048 name: basioccipital endochondral element def: "A basioccipital bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "basioccipital element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "basioccipital skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0010363 ! endochondral element @@ -336206,6 +351864,8 @@ relationship: part_of UBERON:0005902 ! occipital region id: UBERON:0015049 name: carpus endochondral element def: "A carpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "carpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "carpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015021 ! forelimb endochondral element @@ -336222,6 +351882,8 @@ relationship: part_of UBERON:0009880 ! carpal skeleton id: UBERON:0015050 name: tarsus endochondral element def: "A tarsus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "tarsus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "tarsus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015022 ! hindlimb endochondral element @@ -336238,6 +351900,8 @@ relationship: part_of UBERON:0009879 ! tarsal skeleton id: UBERON:0015051 name: exoccipital endochondral element def: "An exoccipital bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "exoccipital element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "exoccipital skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0010363 ! endochondral element @@ -336252,6 +351916,8 @@ relationship: part_of UBERON:0005902 ! occipital region id: UBERON:0015052 name: femur endochondral element def: "A femur bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "femur element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "femur skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015022 ! hindlimb endochondral element @@ -336265,6 +351931,8 @@ relationship: part_of UBERON:0001441 ! hindlimb skeleton id: UBERON:0015053 name: humerus endochondral element def: "A humerus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "humerus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "humerus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0015021 ! forelimb endochondral element @@ -336278,6 +351946,8 @@ relationship: part_of UBERON:0003822 ! forelimb stylopod id: UBERON:0015054 name: iliac endochondral element def: "An iliac bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "iliac element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "iliac skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0004120 ! mesoderm-derived structure @@ -336292,6 +351962,8 @@ relationship: part_of UBERON:0007832 ! pelvic girdle skeleton id: UBERON:0015055 name: pubic endochondral element def: "A pubic bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "pubic element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pubic skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0004120 ! mesoderm-derived structure @@ -336306,6 +351978,8 @@ relationship: part_of UBERON:0007832 ! pelvic girdle skeleton id: UBERON:0015056 name: ischial endochondral element def: "An ischial bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "ischial element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "ischial skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0004120 ! mesoderm-derived structure @@ -336320,6 +351994,8 @@ relationship: part_of UBERON:0007832 ! pelvic girdle skeleton id: UBERON:0015057 name: scapula endochondral element def: "A scapula bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "scapula element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "scapula skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0010363 ! endochondral element @@ -336332,6 +352008,8 @@ relationship: part_of UBERON:0007831 ! pectoral girdle skeleton id: UBERON:0015058 name: alisphenoid endochondral element def: "An alisphenoid bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "alisphenoid element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "alisphenoid skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0010363 ! endochondral element @@ -336344,6 +352022,8 @@ relationship: part_of UBERON:0008895 ! splanchnocranium id: UBERON:0015059 name: orbitosphenoid endochondral element def: "An orbitosphenoid bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "orbitosphenoid element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "orbitosphenoid skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0010363 ! endochondral element @@ -336357,6 +352037,8 @@ relationship: part_of UBERON:0003111 ! sphenoid region id: UBERON:0015060 name: sphenoid endochondral element def: "A sphenoid bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "sphenoid bone skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "sphenoid element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0010313 ! neural crest-derived structure @@ -336370,6 +352052,8 @@ relationship: part_of UBERON:0011156 ! facial skeleton id: UBERON:0015061 name: limb endochondral element def: "A limb bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +subset: human_subset +subset: mouse_subset synonym: "limb bone endochondral element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "limb bone skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0004120 ! mesoderm-derived structure @@ -336386,6 +352070,8 @@ relationship: part_of UBERON:0004381 ! skeleton of limb id: UBERON:0015062 name: bone condensation def: "A delimited region of osteoblasts representing the early stages of bone formation." [AEO:0000213, AEO:JB] +subset: human_subset +subset: mouse_subset xref: AEO:0000213 is_a: UBERON:0005856 {source="AEO"} ! developing mesenchymal condensation is_a: UBERON:0010314 ! structure with developmental contribution from neural crest @@ -336396,6 +352082,8 @@ relationship: part_of UBERON:0004288 {source="AEO"} ! skeleton id: UBERON:0015063 name: autopod endochondral element def: "An endochondral element that is part of a autopod region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0010363 ! endochondral element intersection_of: part_of UBERON:0002470 ! autopod region @@ -336407,6 +352095,8 @@ relationship: part_of UBERON:0006717 {source="cjm"} ! autopodial skeleton id: UBERON:0015064 name: autopod cartilage def: "An autopod endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010881 ! limb cartilage element is_a: UBERON:0015063 ! autopod endochondral element intersection_of: UBERON:0015063 ! autopod endochondral element @@ -336418,6 +352108,8 @@ relationship: implements_design_pattern https://github.com/obophenotype/uberon/w id: UBERON:0015067 name: centrale endochondral element def: "Endochondral element located between the proximal and distal rows of carpals or tarsals and thus representing the central carpals or tarsals[PHENOSCAPE]." [PHENOSCAPE:AMAO] +subset: human_subset +subset: mouse_subset synonym: "central mesopodium element" EXACT [UBERON:0012131] synonym: "centralia" RELATED OMO:0003004 [UBERON:0012131] is_a: UBERON:0015063 ! autopod endochondral element @@ -336429,6 +352121,8 @@ property_value: external_ontology_notes "the FMA term is under 'general anatomic id: UBERON:0015068 name: distal carpal endochondral element def: "A distal mesopodial endochondral element that is part of a forelimb." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal carpal" RELATED SYSTEMATIC [AAO:0000847, UBERON:cjm] is_a: UBERON:0015049 ! carpus endochondral element is_a: UBERON:0018099 ! distal mesopodial endochondral element @@ -336441,6 +352135,8 @@ relationship: part_of UBERON:0009880 {source="skeleton pattern"} ! carpal skelet id: UBERON:0015069 name: distal carpal cartilage element def: "A distal carpal endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015068 ! distal carpal endochondral element is_a: UBERON:0018100 ! distal mesopodial cartilage element is_a: UBERON:0035128 ! manus cartilage element @@ -336452,6 +352148,8 @@ relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue id: UBERON:0015077 name: centrale cartilage def: "A centrale endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015064 ! autopod cartilage is_a: UBERON:0015067 ! centrale endochondral element intersection_of: UBERON:0015067 ! centrale endochondral element @@ -336462,6 +352160,8 @@ relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue id: UBERON:0015078 name: proximal carpal endochondral element def: "A proximal mesopodial endochondral element that is part of a forelimb." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "proximal carpal" RELATED SYSTEMATIC [UBERON:cjm] synonym: "proximal carpal element" EXACT [UBERON:cjm] is_a: UBERON:0015049 ! carpus endochondral element @@ -336475,6 +352175,8 @@ relationship: part_of UBERON:0009880 ! carpal skeleton id: UBERON:0015079 name: proximal carpal cartilage def: "A proximal carpal endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015078 ! proximal carpal endochondral element is_a: UBERON:0017751 ! proximal mesopodial cartilage element is_a: UBERON:0035128 ! manus cartilage element @@ -336488,6 +352190,8 @@ relationship: part_of UBERON:0001442 ! skeleton of manus id: UBERON:0015080 name: proximal carpal bone pre-cartilage condensation def: "A proximal carpal endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation is_a: UBERON:0015078 ! proximal carpal endochondral element intersection_of: UBERON:0015078 ! proximal carpal endochondral element @@ -336499,6 +352203,8 @@ relationship: part_of UBERON:0001442 ! skeleton of manus id: UBERON:0015081 name: proximal tarsal endochondral element def: "A proximal mesopodial endochondral element that is part of a hindlimb." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "proximal tarsal" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015050 ! tarsus endochondral element is_a: UBERON:0017750 ! proximal mesopodial endochondral element @@ -336511,6 +352217,8 @@ relationship: part_of UBERON:0009879 ! tarsal skeleton id: UBERON:0015082 name: proximal tarsal cartilage def: "A proximal tarsal endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015081 ! proximal tarsal endochondral element is_a: UBERON:0017751 ! proximal mesopodial cartilage element is_a: UBERON:0035129 ! pes cartilage element @@ -336524,6 +352232,8 @@ relationship: part_of UBERON:0009879 ! tarsal skeleton id: UBERON:0015083 name: proximal tarsal bone pre-cartilage condensation def: "A proximal tarsal endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010886 ! hindlimb pre-cartilage condensation is_a: UBERON:0015081 ! proximal tarsal endochondral element intersection_of: UBERON:0015081 ! proximal tarsal endochondral element @@ -336533,6 +352243,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation [Term] id: UBERON:0015084 name: distal carpal bone 1 endochondral element +subset: human_subset +subset: mouse_subset synonym: "distal carpal 1" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015049 ! carpus endochondral element relationship: part_of UBERON:0009880 ! carpal skeleton @@ -336541,6 +352253,8 @@ relationship: part_of UBERON:0009880 ! carpal skeleton id: UBERON:0015085 name: distal carpal bone 1 cartilage def: "A distal carpal bone 1 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element is_a: UBERON:0035128 ! manus cartilage element intersection_of: UBERON:0015084 ! distal carpal bone 1 endochondral element @@ -336553,6 +352267,8 @@ relationship: part_of UBERON:0009880 ! carpal skeleton id: UBERON:0015086 name: distal carpal bone 1 pre-cartilage condensation def: "A distal carpal bone 1 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element intersection_of: UBERON:0015084 ! distal carpal bone 1 endochondral element @@ -336563,6 +352279,8 @@ relationship: part_of UBERON:0009880 ! carpal skeleton [Term] id: UBERON:0015087 name: distal carpal bone 2 endochondral element +subset: human_subset +subset: mouse_subset synonym: "distal carpal 2" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015049 ! carpus endochondral element relationship: part_of UBERON:0009880 ! carpal skeleton @@ -336571,6 +352289,8 @@ relationship: part_of UBERON:0009880 ! carpal skeleton id: UBERON:0015088 name: distal carpal bone 2 cartilage def: "A distal carpal bone 2 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element is_a: UBERON:0035128 ! manus cartilage element intersection_of: UBERON:0015087 ! distal carpal bone 2 endochondral element @@ -336583,6 +352303,8 @@ relationship: part_of UBERON:0009880 ! carpal skeleton id: UBERON:0015089 name: distal carpal bone 2 pre-cartilage condensation def: "A distal carpal bone 2 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element intersection_of: UBERON:0015087 ! distal carpal bone 2 endochondral element @@ -336593,6 +352315,8 @@ relationship: part_of UBERON:0009880 ! carpal skeleton [Term] id: UBERON:0015090 name: distal carpal bone 3 endochondral element +subset: human_subset +subset: mouse_subset synonym: "distal carpal 3" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015049 ! carpus endochondral element relationship: part_of UBERON:0009880 ! carpal skeleton @@ -336601,6 +352325,8 @@ relationship: part_of UBERON:0009880 ! carpal skeleton id: UBERON:0015091 name: distal carpal bone 3 cartilage def: "A distal carpal bone 3 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element is_a: UBERON:0035128 ! manus cartilage element intersection_of: UBERON:0015090 ! distal carpal bone 3 endochondral element @@ -336613,6 +352339,8 @@ relationship: part_of UBERON:0009880 ! carpal skeleton id: UBERON:0015092 name: distal carpal bone 3 pre-cartilage condensation def: "A distal carpal bone 3 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element intersection_of: UBERON:0015090 ! distal carpal bone 3 endochondral element @@ -336623,6 +352351,8 @@ relationship: part_of UBERON:0009880 ! carpal skeleton [Term] id: UBERON:0015093 name: distal carpal bone 4 endochondral element +subset: human_subset +subset: mouse_subset synonym: "distal carpal 4" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015049 ! carpus endochondral element relationship: part_of UBERON:0009880 ! carpal skeleton @@ -336631,6 +352361,8 @@ relationship: part_of UBERON:0009880 ! carpal skeleton id: UBERON:0015094 name: distal carpal bone 4 cartilage def: "A distal carpal bone 4 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element is_a: UBERON:0035128 ! manus cartilage element intersection_of: UBERON:0015093 ! distal carpal bone 4 endochondral element @@ -336643,6 +352375,8 @@ relationship: part_of UBERON:0009880 ! carpal skeleton id: UBERON:0015095 name: distal carpal bone 4 pre-cartilage condensation def: "A distal carpal bone 4 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element intersection_of: UBERON:0015093 ! distal carpal bone 4 endochondral element @@ -336653,6 +352387,8 @@ relationship: part_of UBERON:0009880 ! carpal skeleton [Term] id: UBERON:0015096 name: distal carpal bone 5 endochondral element +subset: human_subset +subset: mouse_subset synonym: "distal carpal 5" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015049 ! carpus endochondral element relationship: part_of UBERON:0009880 ! carpal skeleton @@ -336661,6 +352397,8 @@ relationship: part_of UBERON:0009880 ! carpal skeleton id: UBERON:0015097 name: distal carpal bone 5 cartilage def: "A distal carpal bone 5 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element is_a: UBERON:0035128 ! manus cartilage element intersection_of: UBERON:0015096 ! distal carpal bone 5 endochondral element @@ -336673,6 +352411,8 @@ relationship: part_of UBERON:0009880 ! carpal skeleton id: UBERON:0015098 name: distal carpal bone 5 pre-cartilage condensation def: "A distal carpal bone 5 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element intersection_of: UBERON:0015096 ! distal carpal bone 5 endochondral element @@ -336684,6 +352424,8 @@ relationship: part_of UBERON:0009880 ! carpal skeleton id: UBERON:0015099 name: distal tarsal endochondral element def: "A distal mesopodial endochondral element that is part of a hindlimb." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal tarsal" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015050 ! tarsus endochondral element is_a: UBERON:0018099 ! distal mesopodial endochondral element @@ -336696,6 +352438,8 @@ relationship: part_of UBERON:0009879 {source="skeleton pattern"} ! tarsal skelet id: UBERON:0015100 name: distal tarsal cartilage def: "A distal tarsal endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015099 ! distal tarsal endochondral element is_a: UBERON:0018100 ! distal mesopodial cartilage element is_a: UBERON:0035129 ! pes cartilage element @@ -336709,6 +352453,8 @@ relationship: part_of UBERON:0009879 ! tarsal skeleton id: UBERON:0015101 name: distal tarsal bone pre-cartilage condensation def: "A distal tarsal endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010886 ! hindlimb pre-cartilage condensation is_a: UBERON:0015099 ! distal tarsal endochondral element is_a: UBERON:0018101 ! distal mesopodial pre-cartilage condensation @@ -336720,6 +352466,8 @@ relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0015102 name: distal tarsal bone 1 endochondral element +subset: human_subset +subset: mouse_subset synonym: "distal tarsal 1" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015099 ! distal tarsal endochondral element @@ -336727,6 +352475,8 @@ is_a: UBERON:0015099 ! distal tarsal endochondral element id: UBERON:0015103 name: distal tarsal bone 1 cartilage def: "A distal tarsal bone 1 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal tarsal 1 cartilage" EXACT [UBERON:cjm] synonym: "distal tarsal 1 cartilage element" EXACT SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015100 ! distal tarsal cartilage @@ -336741,6 +352491,8 @@ relationship: part_of UBERON:0009879 ! tarsal skeleton id: UBERON:0015104 name: distal tarsal bone 1 pre-cartilage condensation def: "A distal tarsal bone 1 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015101 ! distal tarsal bone pre-cartilage condensation is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element intersection_of: UBERON:0015102 ! distal tarsal bone 1 endochondral element @@ -336751,6 +352503,8 @@ relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0015105 name: distal tarsal bone 2 endochondral element +subset: human_subset +subset: mouse_subset synonym: "distal tarsal 2" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015099 ! distal tarsal endochondral element @@ -336758,6 +352512,8 @@ is_a: UBERON:0015099 ! distal tarsal endochondral element id: UBERON:0015106 name: distal tarsal bone 2 cartilage def: "A distal tarsal bone 2 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "distal tarsal 2 cartilage" EXACT [UBERON:cjm] synonym: "distal tarsal 2 cartilage element" EXACT SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015100 ! distal tarsal cartilage @@ -336772,6 +352528,8 @@ relationship: part_of UBERON:0009879 ! tarsal skeleton id: UBERON:0015107 name: distal tarsal bone 2 pre-cartilage condensation def: "A distal tarsal bone 2 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015101 ! distal tarsal bone pre-cartilage condensation is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element intersection_of: UBERON:0015105 ! distal tarsal bone 2 endochondral element @@ -336782,6 +352540,8 @@ relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0015108 name: distal tarsal bone 3 endochondral element +subset: human_subset +subset: mouse_subset synonym: "distal tarsal 3" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015099 ! distal tarsal endochondral element @@ -336789,6 +352549,8 @@ is_a: UBERON:0015099 ! distal tarsal endochondral element id: UBERON:0015109 name: distal tarsal bone 3 cartilage def: "A distal tarsal bone 3 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015100 ! distal tarsal cartilage is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element intersection_of: UBERON:0015108 ! distal tarsal bone 3 endochondral element @@ -336801,6 +352563,8 @@ relationship: part_of UBERON:0009879 ! tarsal skeleton id: UBERON:0015110 name: distal tarsal bone 3 pre-cartilage condensation def: "A distal tarsal bone 3 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015101 ! distal tarsal bone pre-cartilage condensation is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element intersection_of: UBERON:0015108 ! distal tarsal bone 3 endochondral element @@ -336811,6 +352575,8 @@ relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0015111 name: distal tarsal bone 4 endochondral element +subset: human_subset +subset: mouse_subset synonym: "distal tarsal 4" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015099 ! distal tarsal endochondral element @@ -336818,6 +352584,8 @@ is_a: UBERON:0015099 ! distal tarsal endochondral element id: UBERON:0015112 name: distal tarsal bone 4 cartilage def: "A distal tarsal bone 4 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015100 ! distal tarsal cartilage is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element intersection_of: UBERON:0015111 ! distal tarsal bone 4 endochondral element @@ -336830,6 +352598,8 @@ relationship: part_of UBERON:0009879 ! tarsal skeleton id: UBERON:0015113 name: distal tarsal bone 4 pre-cartilage condensation def: "A distal tarsal bone 4 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015101 ! distal tarsal bone pre-cartilage condensation is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element intersection_of: UBERON:0015111 ! distal tarsal bone 4 endochondral element @@ -336840,6 +352610,8 @@ relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0015114 name: distal tarsal bone 5 endochondral element +subset: human_subset +subset: mouse_subset synonym: "distal tarsal 5" RELATED SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015099 ! distal tarsal endochondral element @@ -336847,6 +352619,8 @@ is_a: UBERON:0015099 ! distal tarsal endochondral element id: UBERON:0015115 name: distal tarsal bone 5 cartilage def: "A distal tarsal bone 5 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015100 ! distal tarsal cartilage is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element intersection_of: UBERON:0015114 ! distal tarsal bone 5 endochondral element @@ -336859,6 +352633,8 @@ relationship: part_of UBERON:0009879 ! tarsal skeleton id: UBERON:0015116 name: distal tarsal bone 5 pre-cartilage condensation def: "A distal tarsal bone 5 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015101 ! distal tarsal bone pre-cartilage condensation is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element intersection_of: UBERON:0015114 ! distal tarsal bone 5 endochondral element @@ -336871,6 +352647,8 @@ id: UBERON:0015117 name: lamina terminalis of cerebral hemisphere def: "The remnant of the lamina terminalis in the developed brain." [http://orcid.org/0000-0002-6601-2165] comment: In the developed brain, the lamina terminalis remains as the thin rostral wall of the third ventricle, stretching from the bases of the major cerebral commissures (the anterior commissure, the commissure of the fornix, and the rostrum of the corpus callosum) to the dorsal surface of the optic chiasm[MGI:anna] +subset: human_subset +subset: mouse_subset synonym: "lamina terminalis" BROAD [FMA:61975] xref: DHBA:12105 xref: EHDAA:3500 @@ -336906,6 +352684,8 @@ relationship: in_taxon NCBITaxon:6199 ! Cestoda id: UBERON:0015120 name: right outer canthus def: "An outer canthus that is in_the_right_side_of a head." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lateral angle of right eye" RELATED [FMA:59317] synonym: "lateral canthus of right eye" RELATED [FMA:59317] synonym: "right angle of eye" EXACT [] @@ -336922,6 +352702,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0015121 name: left outer canthus def: "An outer canthus that is in_the_left_side_of a head." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lateral angle of left eye" RELATED [FMA:59318] synonym: "lateral canthus of left eye" RELATED [FMA:59318] synonym: "left angle of eye" EXACT [] @@ -336938,6 +352720,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0015122 name: anatomical line between outer canthi def: "An anatomical line of the face that connects the two outer (lateral) canthi of the eye. The length of this line is known as the outer canthal distance." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "inter lateral canthal line" EXACT [] synonym: "inter outer canthal line" EXACT [] is_a: UBERON:0006800 ! anatomical line @@ -336953,6 +352737,8 @@ relationship: part_of UBERON:0001456 ! face id: UBERON:0015125 name: anterior internodal tract def: "Internodal tract which consists of the atrial and atrial septal branches." [FMA:9480] +subset: human_subset +subset: mouse_subset synonym: "anterior internodal fasciculus" EXACT [FMA:9480] synonym: "anterior internodal tract muscle tissue" EXACT [FMA:9480] xref: FMA:9480 @@ -336963,6 +352749,8 @@ relationship: part_of UBERON:0002350 {source="FMA"} ! conducting system of heart [Term] id: UBERON:0015126 name: middle internodal tract +subset: human_subset +subset: mouse_subset synonym: "internodal tract of Wenckebach" EXACT [FMA:9482] synonym: "middle internodal fasciculus" EXACT [FMA:9482] synonym: "middle internodal tract muscle tissue" EXACT [FMA:9482] @@ -336972,6 +352760,8 @@ is_a: UBERON:0009966 {source="FMA"} ! internodal tract [Term] id: UBERON:0015127 name: posterior internodal tract +subset: human_subset +subset: mouse_subset synonym: "internodal tract of Thorel" EXACT [FMA:9483] synonym: "posterior internodal fasciculus" EXACT [FMA:9483] synonym: "posterior internodal tract muscle tissue" EXACT [FMA:9483] @@ -336981,6 +352771,8 @@ is_a: UBERON:0009966 {source="FMA"} ! internodal tract [Term] id: UBERON:0015128 name: subepicardial layer of epicardium +subset: human_subset +subset: mouse_subset synonym: "perimysial connective tissue of subepicardium" EXACT [FMA:83105] synonym: "subepicardial connective tissue" EXACT [FMA:83105] xref: FMA:83105 @@ -336993,6 +352785,8 @@ property_value: editor_note "consider merging into myocardial compact layer" xsd id: UBERON:0015129 name: epicardial fat def: "Visceral intrapericardial fat contiguous with the myocardial surface." [DOI:10.5935/abc.20130138] +subset: human_subset +subset: mouse_subset synonym: "epicardial adipose tissue" EXACT [] synonym: "pericardial adipose tissue" EXACT [] xref: FMA:9871 @@ -337013,6 +352807,8 @@ relationship: surrounds UBERON:0000948 ! heart id: UBERON:0015130 name: connective tissue of prostate gland def: "A portion of connective tissue that is part of a prostate gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "connective tissue of prostate" EXACT [FMA:74165] xref: FMA:74165 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure @@ -337026,6 +352822,8 @@ relationship: part_of UBERON:0002367 ! prostate gland id: UBERON:0015131 name: subepithelial connective tissue of prostatic gland subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:74189 is_a: UBERON:0015130 {source="FMA"} ! connective tissue of prostate gland relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -337033,12 +352831,16 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0015132 name: extralobar lactiferous duct +subset: human_subset +subset: mouse_subset xref: FMA:58069 is_a: UBERON:0001765 {source="FMA"} ! mammary duct [Term] id: UBERON:0015133 name: terminal lactiferous duct +subset: human_subset +subset: mouse_subset synonym: "branch of lactiferous duct proper" EXACT [FMA:58260] synonym: "lobular lactiferous duct" EXACT [FMA:58260] xref: FMA:58260 @@ -337047,6 +352849,8 @@ is_a: UBERON:0001765 {source="FMA"} ! mammary duct [Term] id: UBERON:0015134 name: main lactiferous duct +subset: human_subset +subset: mouse_subset xref: FMA:62102 is_a: UBERON:0001765 {source="FMA"} ! mammary duct property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.1/assets/3d-vh-f-mammary-gland-l.glb" xsd:anyURI @@ -337055,24 +352859,32 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/m [Term] id: UBERON:0015135 name: primary lactiferous duct +subset: human_subset +subset: mouse_subset xref: FMA:74428 is_a: UBERON:0001765 {source="FMA"} ! mammary duct [Term] id: UBERON:0015136 name: secondary lactiferous duct +subset: human_subset +subset: mouse_subset xref: FMA:74430 is_a: UBERON:0001765 {source="FMA"} ! mammary duct [Term] id: UBERON:0015137 name: tertiary lactiferous duct +subset: human_subset +subset: mouse_subset xref: FMA:74431 is_a: UBERON:0001765 {source="FMA"} ! mammary duct [Term] id: UBERON:0015138 name: quarternary lactiferous duct +subset: human_subset +subset: mouse_subset xref: FMA:74432 is_a: UBERON:0001765 {source="FMA"} ! mammary duct @@ -337080,6 +352892,8 @@ is_a: UBERON:0001765 {source="FMA"} ! mammary duct id: UBERON:0015139 name: infundibulum of gallbladder def: "The tapering portion of the gall bladder that narrows to form the neck and cystic duct." [MP:0009465] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "gallbladder infundibulum" EXACT [FMA:76652] synonym: "infundibulum vesicae biliaris" EXACT OMO:0003011 [MP:0009465] @@ -337093,6 +352907,8 @@ relationship: part_of UBERON:0002110 {source="FMA"} ! gallbladder id: UBERON:0015142 name: falciform fat def: "A large fat pad that is located at the base of the abdominal wall, in the falciform ligament of the liver." [MURDOCH:768] +subset: human_subset +subset: mouse_subset synonym: "falciform fat depot" RELATED [] synonym: "falciform ligament fat pad" RELATED [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure @@ -337107,6 +352923,8 @@ relationship: part_of UBERON:0001247 ! falciform ligament id: UBERON:0015143 name: mesenteric fat pad def: "Encapsulated adipose tissue associated with the mesentery." [MP:0008903] +subset: human_subset +subset: mouse_subset synonym: "mesenteric fat depot" EXACT [MP:0008903] is_a: UBERON:0003916 ! fat pad is_a: UBERON:0004120 ! mesoderm-derived structure @@ -337118,6 +352936,8 @@ relationship: part_of UBERON:0002095 ! mesentery id: UBERON:0015144 name: autopod hair def: "A strand of hair that is part of a autopod region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hair of hand/foot" EXACT [] synonym: "hand/foot hair" EXACT [] synonym: "paw hair" NARROW [] @@ -337130,6 +352950,8 @@ relationship: part_of UBERON:0002470 ! autopod region id: UBERON:0015145 name: pes hair def: "A strand of hair that is part of a pes." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "foot hair" EXACT [] synonym: "hair of foot" EXACT [] synonym: "hind foot hair" EXACT [] @@ -337143,6 +352965,8 @@ relationship: part_of UBERON:0002387 ! pes id: UBERON:0015146 name: manus hair def: "A strand of hair that is part of a manus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "front paw hair" NARROW [] synonym: "hair of hand" EXACT [] synonym: "hand hair" EXACT [] @@ -337155,6 +352979,8 @@ relationship: part_of UBERON:0002398 ! manus id: UBERON:0015147 name: pinna hair def: "A strand of hair that is part of a pinna." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ear hair" RELATED [] is_a: UBERON:0022279 ! strand of hair on external ear @@ -337166,6 +352992,7 @@ relationship: part_of UBERON:0001757 ! pinna id: UBERON:0015148 name: tail hair def: "A strand of hair that is part of a tail." [OBOL:automatic] +subset: mouse_subset subset: pheno_slim xref: EMAPA:37971 {source="MA:th"} is_a: UBERON:0001037 ! strand of hair @@ -337177,6 +353004,8 @@ relationship: part_of UBERON:0002415 ! tail id: UBERON:0015149 name: ventral hair def: "A strand of hair that is part of a ventrum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ventral coat hair" RELATED [] is_a: UBERON:0001037 ! strand of hair intersection_of: UBERON:0001037 ! strand of hair @@ -337187,6 +353016,8 @@ relationship: part_of UBERON:0013235 ! ventrum id: UBERON:0015150 name: dorsal hair def: "A strand of hair that is part of a dorsum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "back hair" RELATED [] synonym: "dorsal coat hair" RELATED [] synonym: "hair of back" RELATED [FMA:54320] @@ -337200,6 +353031,7 @@ relationship: part_of UBERON:0001137 ! dorsum id: UBERON:0015151 name: Harderian gland duct def: "A duct that is part of a Harderian gland. opens into the conjunctival sac at the base of the nictitating membrane." [PMID:7559104] +subset: mouse_subset synonym: "duct of Harder's gland" EXACT [] synonym: "duct of Harderian gland" EXACT [] synonym: "Harderian duct" RELATED [] @@ -337214,6 +353046,8 @@ property_value: taxon_notes "Typically a single duct per gland, but Harderian gl id: UBERON:0015152 name: gland of ocular region def: "A gland that is typically found in or near the orbital region, in or around either the medial or lateral canthi, and is typically associated with secretions onto the eyeball or associated ducts. Includes the Harderian, nictitans and lacrimal glands." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/614] +subset: human_subset +subset: mouse_subset synonym: "ocular gland" EXACT [] synonym: "orbital gland" RELATED [] is_a: UBERON:0002530 ! gland @@ -337229,6 +353063,8 @@ property_value: taxon_notes "the only orbital gland found in anuran amphibians i id: UBERON:0015153 name: medial gland of ocular region def: "A gland that is located in the ocular region, nearer the inner canthi. Typically associated with or part of the nictitating membrane, when present." [PMID:7559104] +subset: human_subset +subset: mouse_subset synonym: "Harderian gland" NARROW [] synonym: "medial ocular gland" EXACT [] synonym: "medial orbital gland" EXACT [] @@ -337241,6 +353077,8 @@ property_value: taxon_notes "the distinction between Harderian and nictitans gla id: UBERON:0015154 name: lateral gland of orbital region def: "A gland that is located in or around the ocular region, nearer the outer canthi." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "lateral ocular gland" EXACT [] synonym: "lateral orbital gland" EXACT [] is_a: UBERON:0015152 ! gland of ocular region @@ -337250,6 +353088,8 @@ property_value: curator_notes "The class name or definition should not be taken id: UBERON:0015155 name: conjunctival space def: "An anatomical space that is enclosed by a conjunctiva." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cavity of conjunctival sac" EXACT [FMA:59083] synonym: "conjunctival sac cavity" EXACT [FMA:59083] synonym: "subbrillar space" NARROW [NCBITaxon:8570, PMID:7559104] @@ -337267,6 +353107,8 @@ relationship: part_of UBERON:0005908 {source="FMA"} ! conjunctival sac id: UBERON:0015156 name: terminal branch of ophthalmic artery def: "The two terminal branches of the ophthalmic artery in humans are the dorsal nasal artery and the supratrochlear artery." [Wikipedia:Dorsal_nasal_artery, Wikipedia:Supratrochlear_artery] +subset: human_subset +subset: mouse_subset xref: FMA:51956 is_a: UBERON:0001637 ! artery relationship: connecting_branch_of UBERON:0001619 ! ophthalmic artery @@ -337277,6 +353119,8 @@ id: UBERON:0015157 name: zygomatico-orbital artery def: "The middle temporal artery occasionally gives off a zygomatico-orbital branch, which runs along the upper border of the zygomatic arch, between the two layers of the temporal fascia, to the lateral angle of the orbit. This branch, which may arise directly from the superficial temporal artery, supplies the Orbicularis oculi, and anastomoses with the lacrimal and palpebral branches of the ophthalmic artery." [Wikipedia:Zygomatico-orbital_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "zygomaticooerbital branch" RELATED [Wikipedia:Zygomatico-orbital_artery] synonym: "zygomaticoorbital branch" RELATED [Wikipedia:Zygomatico-orbital_artery] xref: FMA:49663 @@ -337291,6 +353135,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0015158 name: ophthalmotemporal branch of external ophthalmic artery comment: The blood supply to the (Harderian) gland has been reported in greatest detail in the sparrow Passer domesticus (Slonaker, 1918), where it is derived through the ophthalmotemporal branch of the external ophthalmic artery http://www.ncbi.nlm.nih.gov/pubmed/7559104 +subset: mouse_subset synonym: "ophthalmotemporal artery" RELATED [] is_a: UBERON:0001637 ! artery relationship: connecting_branch_of UBERON:0001619 ! ophthalmic artery @@ -337302,6 +353147,8 @@ id: UBERON:0015160 name: supraorbital artery def: "The supraorbital artery is an artery of the head. It springs from the ophthalmic artery as that vessel is crossing over to the medial side of the optic nerve." [Wikipedia:Supraorbital_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria supraorbitalis" EXACT OMO:0003011 [Wikipedia:Supraorbital_artery] synonym: "supra-orbital artery" EXACT [FMA:49973] synonym: "supraorbital artery" EXACT [FMA:49973] @@ -337320,6 +353167,8 @@ relationship: supplies UBERON:0001760 ! frontal sinus id: UBERON:0015161 name: inferior branch of oculomotor nerve def: "The inferior branch of the oculomotor nerve or the inferior division, the larger, divides into three branches. One passes beneath the optic nerve to the medial rectus. Another, to the inferior rectus. The third and longest runs forward between the inferior recti and lateralis to the inferior oblique. From the last a short thick branch is given off to the lower part of the ciliary ganglion, and forms its short root. All these branches enter the muscles on their ocular surfaces, with the exception of the nerve to the inferior oblique, which enters the muscle at its posterior border." [Wikipedia:Inferior_branch_of_oculomotor_nerve] +subset: human_subset +subset: mouse_subset synonym: "inferior division of oculomotor nerve" RELATED [FMA:52573] synonym: "inferior ramus of oculomotor nerve" EXACT [FMA:52573] synonym: "oculomotor nerve inferior division" EXACT [FMA:52573] @@ -337347,6 +353196,8 @@ relationship: part_of UBERON:0001643 ! oculomotor nerve id: UBERON:0015162 name: superior branch of oculomotor nerve def: "The superior branch of the oculomotor nerve or the superior division, the smaller, passes medialward over the optic nerve. It supplies the Superior rectus and Levator palpebrae superioris." [Wikipedia:Superior_branch_of_oculomotor_nerve] +subset: human_subset +subset: mouse_subset synonym: "dorsal ramus of occulomotor nerve" RELATED [AAO:0010628] synonym: "dorsal ramus of oculomotor nerve" RELATED [AAO:0010628] synonym: "oculomotor nerve superior division" EXACT [FMA:52572] @@ -337388,6 +353239,7 @@ id: UBERON:0015169 name: tapetum def: "Light reflecting layer found in a variety of different types of eye." [http://orcid.org/0000-0002-6601-2165] subset: functional_classification +subset: mouse_subset synonym: "tapetal layer" EXACT [] synonym: "tapetum layer" EXACT [] xref: BTO:0001350 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} @@ -337418,6 +353270,8 @@ id: UBERON:0015171 name: uterine spiral artery def: "A corkscrew-like artery in premenstrual or progestational endometrium; uterine spiral arteries play a vital role in supplying nutrients to the placenta and fetus, and are thus remodeled into highly dilated inelastic vessels by the action of invading trophoblast (physiological change)." [J:100668, J:117841, MGI:anna, MP:0012726] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "endometrial spiral arteriole" EXACT [] synonym: "endometrial spiral artery" EXACT [BTO:0003371] @@ -337444,6 +353298,8 @@ id: UBERON:0015172 name: endometrial blood vessel def: "A blood vessel that is part of a endometrium." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "blood vessel of endometrium" EXACT [] xref: SCTID:254200009 is_a: UBERON:0001981 ! blood vessel @@ -337459,6 +353315,8 @@ name: helicine branch of uterine artery def: "The helicine branches of uterine artery (or helicine arterioles, or spiral arteries) are small arteries which temporarily supply the endometrium of the uterus during the luteal phase of the menstrual cycle. In histology, identifying the presence of these arteries is one of the most useful techniques in identifying the phase of the cycle." [Wikipedia:Helicine_branches_of_uterine_artery] comment: Notes: The straight branches of the radial arteries of the uterus terminate in capillaries in the basal layer, while the spiral or coiled branches penetrate to the surface epithelium subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arcuate artery of uterus" EXACT [] synonym: "helicine arteriole" RELATED INCONSISTENT [Wikipedia:Helicine_branches_of_uterine_artery] synonym: "helicine artery of uterus" EXACT [FMA:21101] @@ -337480,6 +353338,8 @@ id: UBERON:0015174 name: helicine artery of penis def: "The helicine arteries of penis are arteries in the penis. They are found in the corpora cavernosa penis. They are involved in the process of erection." [Wikipedia:Helicine_arteries_of_penis] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteriae helicinae penis" EXACT OMO:0003011 [Wikipedia:Helicine_arteries_of_penis] synonym: "helicine arteries" RELATED OMO:0003004 [] xref: FMA:19796 @@ -337500,6 +353360,8 @@ relationship: supplies UBERON:0000989 ! penis id: UBERON:0015177 name: helicine artery def: "Either the helicine artery of the penis or the helicine artery of the uterus." [Wikipedia:Helicine_arteries] +subset: human_subset +subset: mouse_subset synonym: "helicine arteries" EXACT [] xref: Wikipedia:Helicine_arteries is_a: UBERON:0001637 ! artery @@ -337512,6 +353374,8 @@ relationship: part_of UBERON:0000990 ! reproductive system id: UBERON:0015178 name: somite border def: "A region of somite adjacent to presomitic mesoderm." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "inter-somited border" RELATED [] synonym: "intersomitic boundary" RELATED [] @@ -337533,6 +353397,8 @@ relationship: part_of UBERON:0002329 ! somite id: UBERON:0015179 name: somite boundary epithelium def: "Epithelium located in the intersomitic region." [XAO:0004077, XAO:EJS] +subset: human_subset +subset: mouse_subset synonym: "intersomitic epithelium" EXACT [XAO:0004077] synonym: "intersomitic membrane" EXACT [XAO:0004077] xref: XAO:0004077 @@ -337546,6 +353412,8 @@ id: UBERON:0015180 name: neck of talus def: "The neck of talus is directed forward and medialward, and comprises the constricted portion of the bone between the body and the oval head. Its upper and medial surfaces are rough, for the attachment of ligaments; its lateral surface is concave and is continuous below with the deep groove for the interosseous talocalcaneal ligament." [Wikipedia:Neck_of_talus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "collum tali" RELATED [Wikipedia:Neck_of_talus] synonym: "talar neck" EXACT [FMA:33636] @@ -337564,6 +353432,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0015181 name: neck of tooth def: "The slightly constricted part of a tooth, between the crown and the root." [http://www.medilexicon.com/medicaldictionary.php?s=neck+of+tooth] +subset: human_subset +subset: mouse_subset synonym: "cervical margin of tooth" RELATED [http://www.medilexicon.com/medicaldictionary.php?s=neck+of+tooth] synonym: "cervical zone of tooth" RELATED [http://www.medilexicon.com/medicaldictionary.php?s=neck+of+tooth] synonym: "cervix dentis" EXACT OMO:0003011 [FMA:TA] @@ -337584,6 +353454,8 @@ relationship: part_of UBERON:0001091 ! calcareous tooth id: UBERON:0015189 name: perineural vascular plexus def: "The capillary bed that initially surrounds the relative avascular brain and spinal cord; the perineural vascular plexus (PNVP) is the precursor to the blood brain barrier formed by angioblasts which migrate away from somites and is recruited to surround the neural tube in response to VEGF; vascularization of the brain and spinal cord occurs via angiogenesis as sprouting vessels from the PNVP invade the neuroepithelium and grow inward toward the ventricular lumen[MP]." [MP:0012732] +subset: human_subset +subset: mouse_subset synonym: "PNVP" EXACT OMO:0003000 [MGI:anna] xref: EMAPA:35678 is_a: UBERON:0013141 ! capillary bed @@ -337608,6 +353480,8 @@ property_value: taxon_notes "Caecilians posses a lymph heart at every segment bo id: UBERON:0015203 name: non-connected functional system def: "An anatomical group whose component structures share a common function." [AEO:0000093, AEO:JB, FBbt:00007278, FBC:DOS] +subset: human_subset +subset: mouse_subset xref: AEO:0000093 xref: FBbt:00007278 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034923 ! disconnected anatomical group @@ -337616,6 +353490,8 @@ is_a: UBERON:0034923 ! disconnected anatomical group id: UBERON:0015204 name: glandular system def: "A non-connected functional system that is composed primarily of a gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EHDAA2:0002223 is_a: UBERON:0015203 ! non-connected functional system intersection_of: UBERON:0015203 ! non-connected functional system @@ -337627,6 +353503,8 @@ id: UBERON:0015212 name: lateral structure def: "Any structure that is placed on one side of the left-right axis of a bilaterian." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset subset: non_informative is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure @@ -337650,6 +353528,8 @@ relationship: in_taxon NCBITaxon:6656 ! Arthropoda id: UBERON:0015214 name: arcuate ligament def: "A ligament that is part of a diaphragm." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:19236 xref: FMA:58280 is_a: UBERON:0000211 ! ligament @@ -337662,6 +353542,8 @@ relationship: part_of UBERON:0001103 ! diaphragm id: UBERON:0015215 name: median arcuate ligament def: "The median arcuate ligament is a ligament under the diaphragm that connects the right and left crura of diaphragm." [Wikipedia:Median_arcuate_ligament] +subset: human_subset +subset: mouse_subset xref: FMA:58281 xref: Wikipedia:Median_arcuate_ligament is_a: UBERON:0015214 ! arcuate ligament @@ -337669,6 +353551,8 @@ is_a: UBERON:0015214 ! arcuate ligament [Term] id: UBERON:0015216 name: nasal meatus +subset: human_subset +subset: mouse_subset xref: EMAPA:18593 xref: FMA:53146 xref: SCTID:310212002 @@ -337679,6 +353563,8 @@ relationship: part_of UBERON:0000004 {source="EMAPA"} ! nose id: UBERON:0015219 name: middle nasal meatus def: "The middle meatus is a nasal opening or canal situated between the middle and inferior conchae, and extends from the anterior to the posterior end of the latter. The lateral wall of this meatus can be satisfactorily studied only after the removal of the middle concha. On it is a curved fissure, the hiatus semilunaris, limited below by the edge of the uncinate process of the ethmoid and above by an elevation named the bulla ethmoidalis; the middle ethmoidal cells are contained within this bulla and open on or near to it. Through the hiatus semilunaris the meatus communicates with a curved passage termed the infundibulum, which communicates in front with the anterior ethmoidal cells and in rather more than fifty percent of skulls is continued upward as the frontonasal duct into the frontal air-sinus; when this continuity fails, the frontonasal duct opens directly into the anterior part of the meatus. Below the bulla ethmoidalis and hidden by the uncinate process of the ethmoid is the opening of the maxillary sinus (ostium maxillare); an accessory opening is frequently present above the posterior part of the inferior nasal concha." [Wikipedia:Middle_nasal_meatus] +subset: human_subset +subset: mouse_subset synonym: "middle meatus" RELATED [Wikipedia:Middle_nasal_meatus] synonym: "middle meatus of the nose" RELATED [Wikipedia:Middle_nasal_meatus] xref: EMAPA:19277 @@ -337691,6 +353577,8 @@ is_a: UBERON:0015216 ! nasal meatus id: UBERON:0015220 name: inferior nasal meatus def: "The inferior meatus, the largest of the three meatuses of the nose, is the space between the inferior concha and the floor of the nasal cavity. It extends almost the entire length of the lateral wall of the nose, is broader in front than behind, and presents anteriorly the lower orifice of the nasolacrimal canal." [Wikipedia:Inferior_nasal_meatus] +subset: human_subset +subset: mouse_subset synonym: "inferior meatus" RELATED [Wikipedia:Inferior_nasal_meatus] xref: EMAPA:19278 xref: FMA:53140 @@ -337701,6 +353589,8 @@ is_a: UBERON:0015216 ! nasal meatus [Term] id: UBERON:0015221 name: common nasal meatus +subset: human_subset +subset: mouse_subset xref: FMA:53141 is_a: UBERON:0015216 ! nasal meatus @@ -337708,18 +353598,24 @@ is_a: UBERON:0015216 ! nasal meatus id: UBERON:0015222 name: ventral nasal meatus def: "The ventral nasal meatus is found between the ventral nasal concha and the dorsal surface of the hard palate.It connects the nasal vestibule with the nasopharynx. Rostrally it is narrow at the nasal vestibule and widens caudally towards the nasopharyngeal meatus. The ventral nasal meatus is the main passage for air. Apart from olfaction, the nasal cavity functions to warm the inhaled air as it passes through the meatuses over the vascular beds of the mucosa. The air is humidified by the vaporization of tears and serous nasal secretion. The air is cleaned throughout the scattered mucous glands. These glands secrete mucous through the nasal cavity and the mucous serves to trap the large particles that come into contact with it. Clinically in the horse the ventral nasal meatus is the main passage through which a stomach tube can be passed to the pharynx and oesophagus and then to the stomach. This kind of a tube is commonly used when drenching a horse for colic, as well as having many other veterinary applications. The tube has to pass through the ventral nasal meatus to the nasopharyngeal meatus and the caudal nares to reach the pharynx and oesophagus. If the tube is accidentally passed into the dorsal or middle nasal meatuses it would pass to the ethmotubinates and cause massive haemorrhage." [MURDOCH:2178] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015216 ! nasal meatus [Term] id: UBERON:0015223 name: dorsal nasal meatus def: "The dosal nasal meatus is a narrow passage bounded dorsally by the roof of the nasal cavity and ventrally by the dorsal concha. It terminates caudally at the junction of the inner plate of the frontal bone with the cribiform plate and lateral mass of the ethmoid bone. It is the shortest and shallowest of the three meatuses." [MURDOCH:659] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015216 ! nasal meatus [Term] id: UBERON:0015224 name: interventricular foramen intermedium def: "An anatomical conduit that is part of a ventricular septum intermedium." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interventricular ostium intermedium" EXACT OMO:0003011 [] is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! mesoderm-derived structure @@ -337732,6 +353628,8 @@ relationship: part_of UBERON:0004153 ! ventricular septum intermedium id: UBERON:0015225 name: atrial foramen intermedium def: "An anatomical conduit that is part of a atrial septum intermedium." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "interatrial ostium intermedium" EXACT OMO:0003011 [] synonym: "ostium intermedium" RELATED [] is_a: UBERON:0004111 ! anatomical conduit @@ -337743,6 +353641,8 @@ relationship: part_of UBERON:0004159 ! atrial septum intermedium [Term] id: UBERON:0015226 name: bulbar spiral septum +subset: human_subset +subset: mouse_subset xref: SCTID:361469006 is_a: UBERON:0002099 ! cardiac septum relationship: part_of UBERON:0000948 ! heart @@ -337751,6 +353651,8 @@ relationship: part_of UBERON:0000948 ! heart id: UBERON:0015227 name: peristaltic circulatory vessel def: "A vessel down which passes a wave of muscular contraction, that forces the flow of haemolymphatic fluid." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "peristaltic heart" EXACT [http://orcid.org/0000-0002-6601-2165] xref: ANISEED:1235302 xref: BSA:0000063 @@ -337768,6 +353670,8 @@ id: UBERON:0015228 name: circulatory organ def: "A hollow, muscular organ, which, by contracting rhythmically, contributes to the circulation of lymph, blood or analogs. Examples: a chambered vertebrate heart; the tubular peristaltic heart of ascidians; the dorsal vessel of an insect; the lymoh heart of a reptile." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "cardiac pump" EXACT [] synonym: "cardiac structure" RELATED [] synonym: "circulatory vessel" NARROW [] @@ -337781,6 +353685,8 @@ relationship: part_of UBERON:0001009 ! circulatory system id: UBERON:0015229 name: accessory circulatory organ def: "A circulatory organ that is not responsible for primary circulation." [UBERON:cjm] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015228 ! circulatory organ [Term] @@ -337825,6 +353731,8 @@ relationship: part_of UBERON:0001555 {source="WBbt"} ! digestive tract id: UBERON:0015233 name: nucleus of dorsal thalamus def: "A nucleus of brain that is part of a dorsal thalamus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "dorsal thalamic nucleus" EXACT [] synonym: "nucleus of thalamus proper" EXACT [] is_a: UBERON:0007692 ! nucleus of thalamus @@ -337837,6 +353745,8 @@ relationship: present_in_taxon NCBITaxon:7762 {notes="Hagfish possess a habenula id: UBERON:0015234 name: nucleus of ventral thalamus def: "A nucleus of brain that is part of a ventral thalamus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ventral thalamic nucleus" EXACT [] is_a: UBERON:0007692 ! nucleus of thalamus intersection_of: UBERON:0002308 ! nucleus of brain @@ -337847,6 +353757,8 @@ relationship: part_of UBERON:0001900 ! ventral thalamus id: UBERON:0015238 name: pineal complex def: "A cluster in the epithalamus that consists of the pineal body and any associated structures, such as the parapineal gland or the parietal organ. The complex is poorly developed in mammals." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: TAO:0001359 xref: ZFA:0001359 is_a: UBERON:0000477 ! anatomical cluster @@ -337872,6 +353784,8 @@ property_value: taxon_notes "In lampreys and apparently in some fossil fish, the id: UBERON:0015243 name: lower part of vagina def: "The lower third of the vagina." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "caudal vagina" EXACT [] synonym: "lower third of vagina" RELATED [] synonym: "lower vagina" RELATED [] @@ -337891,6 +353805,8 @@ relationship: part_of UBERON:0000996 {source="EMAPA"} ! vagina [Term] id: UBERON:0015244 name: accessory olfactory bulb granule cell layer +subset: human_subset +subset: mouse_subset synonym: "accessory olfactory bulb, granular layer" EXACT [ABA:AOBgr] synonym: "AOB, granular layer" EXACT [DMBA:AGr] xref: DMBA:15961 @@ -337906,6 +353822,8 @@ relationship: part_of UBERON:0005378 ! olfactory bulb granule cell layer id: UBERON:0015245 name: septal olfactory organ def: "A spatially segregated cluster of sensory cells in the nasal cavity." [http://www.ncbi.nlm.nih.gov/books/NBK55971/] +subset: human_subset +subset: mouse_subset xref: EMAPA:35764 xref: MA:0001327 is_a: UBERON:0004121 ! ectoderm-derived structure @@ -337919,6 +353837,7 @@ relationship: part_of UBERON:0005726 {source="NCBIBook:NBK55971"} ! chemosensory id: UBERON:0015246 name: septal organ of Masera def: "A small island of olfactory neuroepithelium lying bilaterally at the ventral base of the nasal septum near the entrance of the nasopharynx." [NCBIBook:NBK55971] +subset: mouse_subset synonym: "SO of Masera" RELATED [NCBIBook:NBK55971] xref: EMAPA:35766 xref: MA:0002890 @@ -337934,6 +353853,8 @@ property_value: taxon_notes "This olfactory apparatus has been observed in many id: UBERON:0015247 name: bifurcation of trachea def: "This is the point at which the trachea splits into two (left and right) principal bronchi. It is located in the region of the fourth to sixth intercostal space, though this varies with species and with respiratory phase. This position closely associates the bifurcation with the heart base. The thickened median crest initiating the bifurcation is called the tracheal carina ." [MURDOCH:1966] +subset: human_subset +subset: mouse_subset synonym: "bifurcatio tracheae" EXACT OMO:0003011 [FMA:TA] synonym: "tracheal bifurcation" EXACT [FMA:7464] xref: EMAPA:37555 {source="MA:th"} @@ -337950,6 +353871,8 @@ relationship: part_of UBERON:0003126 {source="MA"} ! trachea id: UBERON:0015249 name: digit skin def: "A zone of skin that is part of a digit [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:32615 xref: MA:0003011 @@ -337961,6 +353884,8 @@ relationship: part_of UBERON:0002544 ! digit [Term] id: UBERON:0015250 name: inferior olivary commissure +subset: human_subset +subset: mouse_subset synonym: "interolivary commissure" RELATED [MA:0003019] xref: EMAPA:37610 {source="MA:th"} xref: MA:0003019 @@ -337971,6 +353896,8 @@ relationship: part_of UBERON:0014891 {source="MA-modified"} ! brainstem white ma [Term] id: UBERON:0015251 name: modified sebaceous gland +subset: human_subset +subset: mouse_subset xref: EMAPA:37680 {source="MA:th"} xref: MA:0003043 is_a: UBERON:0001821 {source="MA"} ! sebaceous gland @@ -337979,6 +353906,8 @@ is_a: UBERON:0001821 {source="MA"} ! sebaceous gland id: UBERON:0015252 name: coat hair follicle def: "A hair follicle that is part of a coat of hair." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:35246 xref: MA:0000160 is_a: UBERON:0002073 ! hair follicle @@ -337990,6 +353919,8 @@ relationship: part_of UBERON:0010166 ! coat of hair id: UBERON:0015280 name: pancreas left lobe def: "A pancreatic lobule that is in_the_left_side_of a exocrine pancreas." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37711 {source="MA:th"} xref: MA:0000722 is_a: UBERON:0007324 ! pancreatic lobule @@ -338002,6 +353933,8 @@ relationship: in_left_side_of UBERON:0000017 ! exocrine pancreas id: UBERON:0015281 name: pancreas right lobe def: "A pancreatic lobule that is in_the_right_side_of a exocrine pancreas." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37712 {source="MA:th"} xref: MA:0000723 is_a: UBERON:0007324 ! pancreatic lobule @@ -338014,6 +353947,8 @@ relationship: in_right_side_of UBERON:0000017 ! exocrine pancreas id: UBERON:0015329 name: respiratory system basement membrane def: "A basement membrane of epithelium that is part of a respiratory system." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37570 {source="MA:th"} xref: MA:0001815 is_a: UBERON:0005769 ! basement membrane of epithelium @@ -338027,6 +353962,8 @@ id: UBERON:0015350 name: saphenous artery def: "A branch of the descending genicular artery, the last branch (most distal) of the femoral, the saphenous is also variable. It usually lies between the sartorius and the garcilis muscles and supplies their distal ends. The artery accompanies the saphenous nerve. It usually supplies the skin on the medial and proximal part of the leg. The artery may continue to join, in varying degrees, the dorsalis pedis artery and plantaris pedis arteries." [http://www.anatomyatlases.org/AnatomicVariants/Cardiovascular/Text/Arteries/Saphenous.shtml] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ramus saphenus (arteria descendentis genus)" EXACT OMO:0003011 [FMA:22510, FMA:TA] xref: EMAPA:37220 {source="MA:th"} xref: FMA:22510 @@ -338039,6 +353976,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0015410 name: heart plus pericardium subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "heart/pericardium" EXACT [MA:0002449] xref: EMAPA:37597 {source="MA:th"} xref: MA:0002449 @@ -338050,6 +353989,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0015418 name: urethra mesenchymal layer def: "A mesenchyme that is part of a urethra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37786 {source="MA:th"} xref: MA:0002648 is_a: UBERON:0003104 ! mesenchyme @@ -338062,6 +354003,8 @@ relationship: part_of UBERON:0000057 ! urethra id: UBERON:0015420 name: ureteral valve def: "A valve that is part of a ureter." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "ureteral valve" EXACT [MA:0002658] synonym: "valve or ureter" EXACT [] xref: EMAPA:37781 {source="MA:th"} @@ -338077,6 +354020,8 @@ relationship: part_of UBERON:0000056 ! ureter id: UBERON:0015423 name: hilar portion of hepatic duct def: "The segment of either hepatic duct located in the hilum of the liver." [ncithesaurus:Hilar_Portion_of_the_Hepatic_Duct] +subset: human_subset +subset: mouse_subset synonym: "hilar part of hepatic duct" EXACT [MA:0002665] xref: EMAPA:37599 {source="MA:th"} xref: MA:0002665 @@ -338090,6 +354035,8 @@ relationship: part_of UBERON:0005604 {source="MA"} ! extrahepatic part of hepati id: UBERON:0015430 name: levator auris longus muscle def: "Muscle organ located on the dorsal surface of the head innervated by the facial nerve." [http://neurolex.org/wiki/Category\:Levator_auris_longus_muscle] +subset: human_subset +subset: mouse_subset synonym: "LAL" RELATED OMO:0003000 [http://neurolex.org/wiki/Category\:Levator_auris_longus_muscle] synonym: "levator auris longus" EXACT [MA:0002758] xref: EMAPA:36627 @@ -338101,6 +354048,8 @@ relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0015432 name: accessory olfactory bulb mitral cell layer +subset: human_subset +subset: mouse_subset synonym: "accessory olfactory bulb, mitral layer" EXACT [ABA:AOBmi] xref: EMAPA:35111 xref: MA:0002766 @@ -338115,6 +354064,8 @@ relationship: part_of UBERON:0004186 ! olfactory bulb mitral cell layer id: UBERON:0015433 name: blood vessel external elastic membrane def: "A thin layer of fibrous tissue capable of stretching and contracting. It is part of the tunica media of the blood vessels." [ncithesaurus:External_Elastic_Membrane] +subset: human_subset +subset: mouse_subset synonym: "external elastic lamina" EXACT [FMA:68206] synonym: "external elastic membrane" EXACT [MA:0002862] synonym: "outer elastic lamina" RELATED [FMA:68206] @@ -338130,6 +354081,8 @@ property_value: external_ontology_notes "in FMA this is classified as an acellul id: UBERON:0015445 name: anterior lingual gland duct def: "A duct that is part of a anterior lingual gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37641 {source="MA:th"} xref: MA:0002938 xref: SCTID:362180000 @@ -338142,6 +354095,8 @@ relationship: part_of UBERON:0006330 ! anterior lingual gland id: UBERON:0015453 name: subcutaneous lymph node def: "A lymph node that is part of a hypodermis." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: MA:0003028 is_a: UBERON:0000029 ! lymph node is_a: UBERON:0004120 ! mesoderm-derived structure @@ -338153,6 +354108,8 @@ relationship: part_of UBERON:0002072 ! hypodermis id: UBERON:0015454 name: pancreatic fat pad def: "A fat pad that is part of a pancreas." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: MA:0003029 is_a: UBERON:0003586 ! trunk connective tissue is_a: UBERON:0003916 ! fat pad @@ -338163,6 +354120,8 @@ relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0015455 name: accessory hepatic vein +subset: human_subset +subset: mouse_subset xref: EMAPA:37065 {source="MA:th"} xref: MA:0003035 is_a: UBERON:0001143 {source="MA"} ! hepatic vein @@ -338171,6 +354130,8 @@ is_a: UBERON:0001143 {source="MA"} ! hepatic vein id: UBERON:0015458 name: mediastinal fat pad def: "A fat pad that is part of a mediastinum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: MA:0003063 is_a: UBERON:0003593 ! thoracic cavity connective tissue is_a: UBERON:0003916 ! fat pad @@ -338182,6 +354143,8 @@ relationship: located_in UBERON:0003728 ! mediastinum id: UBERON:0015469 name: splenic lymph node def: "The splenic lymph nodes (or pancreaticolienal) accompany the lienal (splenic) artery, and are situated in relation to the posterior surface and upper border of the pancreas; one or two members of this group are found in the gastrolienal ligament. Their afferents are derived from the stomach, spleen, and pancreas, their efferents join the celiac group of preaortic glands." [Wikipedia:Splenic_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "jPS 10 node" RELATED [FMA:66187] synonym: "jPS no. 10 node" RELATED [FMA:66187] synonym: "lymph node of splenic hilum" RELATED [FMA:66187] @@ -338199,6 +354162,8 @@ id: UBERON:0015472 name: tracheobronchial lymph node alt_id: UBERON:0016381 def: "A lymph node located near the bifurcation of the trachea." [ncithesaurus:Tracheobronchial_Lymph_Node] +subset: human_subset +subset: mouse_subset synonym: "bronchial lymph node" NARROW [MA:0003078] synonym: "lymph node, tracheobronchial" RELATED [] synonym: "nodus tracheobronchiale lymphaticus" EXACT [FMA:5950] @@ -338223,6 +354188,8 @@ property_value: external_definition "Single (unpaired) lymph node at the trachea id: UBERON:0015474 name: axilla skin def: "A zone of skin that is part of a axilla." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "axillary skin" EXACT [FMA:37322] synonym: "skin of armpit" EXACT [PMID:38565739] synonym: "skin of axilla" EXACT [FMA:37322] @@ -338239,6 +354206,8 @@ relationship: part_of UBERON:0009472 ! axilla id: UBERON:0015476 name: nose skin def: "A zone of skin that is part of a external nose." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "external nasal skin" EXACT [FMA:24763] synonym: "skin of external nose" EXACT [FMA:24763] synonym: "skin of nose" EXACT [FMA:24763] @@ -338254,6 +354223,8 @@ relationship: part_of UBERON:0007827 ! external nose id: UBERON:0015477 name: axillary fat pad def: "A fat pad that is part of a axilla." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: MA:0003091 is_a: UBERON:0003916 ! fat pad intersection_of: UBERON:0003916 ! fat pad @@ -338264,6 +354235,8 @@ relationship: part_of UBERON:0009472 ! axilla id: UBERON:0015479 name: scrotum skin def: "A zone of skin that is part of a scrotum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "scrotal skin" EXACT [] synonym: "skin of scrotum" EXACT [FMA:20432] @@ -338282,6 +354255,8 @@ id: UBERON:0015480 name: proper hepatic artery def: "The hepatic artery proper (also proper hepatic artery), arises from the common hepatic artery and runs alongside the portal vein and the common bile duct to form the portal triad. The hepatic artery proper gives off a small supraduodenal artery to the duodenal bulb. Then the right gastric artery comes off and runs to the left along the lesser curvature of the stomach to meet the left gastric artery, which is a branch of the celiac trunk. It subsequently gives off the cystic artery, which feeds the gallbladder, before bifurcating into the right and left hepatic arteries. Of note, the right and left hepatic arteries may demonstrate variant anatomy. A replaced right hepatic artery may arise from the superior mesenteric artery (SMA) and a replaced left hepatic artery may arise from the left gastric artery." [Wikipedia:Hepatic_artery_proper] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "hepatic artery proper" EXACT [FMA:14772] synonym: "proper hepatic" RELATED [Wikipedia:Hepatic_artery_proper] xref: EMAPA:37217 {source="MA:th"} @@ -338298,6 +354273,8 @@ id: UBERON:0015481 name: left hepatic artery def: "A hepatic artery that is part of a left lobe of liver." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "left branch of hepatic artery" EXACT [FMA:14779] synonym: "left part of hepatic artery proper" EXACT [FMA:14779] synonym: "ramus sinister (arteria hepatica propria)" EXACT OMO:0003011 [FMA:14779, FMA:TA] @@ -338317,6 +354294,8 @@ id: UBERON:0015482 name: right hepatic artery def: "A hepatic artery that is part of a right lobe of liver." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ramus dexter (arteria hepatica propria)" EXACT OMO:0003011 [FMA:14778, FMA:TA] synonym: "right branch of hepatic artery proper" EXACT [FMA:14778] synonym: "right part of hepatic artery proper" EXACT [FMA:14778] @@ -338335,6 +354314,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0015484 name: epidermis of metapodial pad def: "A zone of skin that is part of a metapodial pad." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "foot pad skin" RELATED [MA:0003105] xref: EMAPA:37355 {source="MA:th"} @@ -338350,6 +354331,8 @@ property_value: external_ontology_notes "MA distinguishes between foot pad and f id: UBERON:0015485 name: choledocho-duodenal junction def: "Hat part of the duodenal wall traversed by the ductus choledochus, ductus pancreaticus, and ampulla." [http://medical-dictionary.thefreedictionary.com/choledochoduodenal+junction] +subset: human_subset +subset: mouse_subset synonym: "choledochoduodenal junction" EXACT [MA:0003108] xref: EMAPA:37478 {source="MA:th"} xref: MA:0003108 @@ -338364,6 +354347,8 @@ relationship: connects UBERON:0002394 ! bile duct id: UBERON:0015488 name: sural nerve def: "The sural nerve (short saphenous nerve), formed by the junction of the medial sural cutaneous with the peroneal anastomotic branch of the lateral sural cutaneous nerve, passes downward near the lateral margin of the tendo calcaneus, lying close to the small saphenous vein, to the interval between the lateral malleolus and the calcaneus. It runs forward below the lateral malleolus, and is continued as the lateral dorsal cutaneous nerve along the lateral side of the foot and little toe (via a dorsal digital nerve), communicating on the dorsum of the foot with the intermediate dorsal cutaneous nerve, a branch of the superficial peroneal. In the leg, its branches communicate with those of the posterior femoral cutaneous." [Wikipedia:Sural_nerve] +subset: human_subset +subset: mouse_subset synonym: "nerve, sural" RELATED [] synonym: "short saphenal nerve" RELATED [] xref: EMAPA:37757 {source="MA:th"} @@ -338382,6 +354367,8 @@ property_value: has_relational_adjective "sural" xsd:string id: UBERON:0015510 name: body of corpus callosum def: "An area within the corpus callosum, a white matter structure within the cleft that separates the left and right cerebral hemispheres in the mammalian brain, between the genu (anterior region) and the splenium (posterior region)." [ncithesaurus:Body_of_the_Corpus_Callosum] +subset: human_subset +subset: mouse_subset synonym: "body of corpus callosum" RELATED [NeuroNames:195] synonym: "body of the corpus callosum" RELATED [NeuroNames:195] synonym: "corpus callosum body" EXACT [FMA:61947] @@ -338407,6 +354394,8 @@ relationship: part_of UBERON:0002336 ! corpus callosum id: UBERON:0015593 name: frontal gyrus def: "A gyrus that is part of a frontal cortex." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: NCIT:C32636 xref: UMLS:C0228195 is_a: UBERON:0000200 ! gyrus @@ -338418,6 +354407,8 @@ relationship: part_of UBERON:0001870 ! frontal cortex id: UBERON:0015599 name: genu of corpus callosum def: "Part of corpus callosum comprising the 'kneelike' anterior bend (adapted from Nolte, The Human Brain, 6th ed., 2009 pg 664)." [NLX:144462] +subset: human_subset +subset: mouse_subset synonym: "corpus callosum genu" EXACT [FMA:61946] synonym: "corpus callosum, genu" RELATED OMO:0003011 [NeuroNames:194] synonym: "genu" RELATED [NeuroNames:194] @@ -338446,6 +354437,8 @@ relationship: part_of UBERON:0002336 ! corpus callosum id: UBERON:0015703 name: rostrum of corpus callosum def: "The part of the corpus callosum that projects posteriorly and inferiorly from the anteriormost genu." [Wikipedia:Corpus_callosum] +subset: human_subset +subset: mouse_subset synonym: "corpus callosum rostrum" RELATED OMO:0003011 [NeuroNames:193] synonym: "corpus callosum, rostrum" RELATED [NeuroNames:193] synonym: "rostrum" RELATED [NeuroNames:193] @@ -338470,6 +354463,8 @@ relationship: part_of UBERON:0002336 ! corpus callosum id: UBERON:0015704 name: sagittal sinus def: "Either the inferior or superior sagittal sinus." [Wikipedia:Sagittal_sinus] +subset: human_subset +subset: mouse_subset xref: NCIT:C12513 xref: SCTID:244400002 xref: UMLS:C0447120 @@ -338480,6 +354475,8 @@ is_a: UBERON:0017640 {source="FMA-abduced"} ! unpaired venous dural sinus id: UBERON:0015708 name: splenium of the corpus callosum def: "The posterior end of the corpus callosum. It overlaps the tela chorioidea of the third ventricle and the mid-brain, and ends in a thick, convex, free border." [Wikipedia:Splenium] +subset: human_subset +subset: mouse_subset synonym: "corpus callosum splenium" EXACT [FMA:61948] synonym: "corpus callosum splenium" RELATED OMO:0003011 [NeuroNames:196] synonym: "corpus callosum, splenium" EXACT [FMA:61948] @@ -338509,6 +354506,8 @@ id: UBERON:0015716 name: anal canal epithelium def: "An epithelium that is part of a anal canal." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "anal canal epithelium" EXACT [FMA:17511] synonym: "epithelium of anal canal" EXACT [FMA:17511] xref: EMAPA:18835 @@ -338524,6 +354523,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0015717 name: smooth muscle tissue layer of ejaculatory duct def: "A smooth muscle tissue that is part of a ejaculatory duct." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscle layer of ejaculatory duct" EXACT [FMA:19372] xref: EMAPA:32289 xref: FMA:19372 @@ -338537,6 +354538,8 @@ relationship: part_of UBERON:0000999 ! ejaculatory duct id: UBERON:0015751 name: inferior tarsal muscle def: "A smooth muscle tissue that is part of a inferior eyelid tarsus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:49059 xref: SCTID:368783000 is_a: UBERON:0003386 ! smooth muscle of eye @@ -338548,6 +354551,8 @@ relationship: part_of UBERON:0004774 ! inferior eyelid tarsus [Term] id: UBERON:0015757 name: heterogeneous tissue +subset: human_subset +subset: mouse_subset synonym: "portion of heterogeneous tissue" EXACT [FMA:62798] xref: FMA:62798 is_a: UBERON:0000479 {source="FMA"} ! tissue @@ -338556,6 +354561,8 @@ is_a: UBERON:0000479 {source="FMA"} ! tissue id: UBERON:0015760 name: mixed stratified cuboidal and columnar epithelium def: "Multilaminar epithelium, which consists of more than one layer of cuboidal and columnar cells, only one layer of which is in contact with a basement membrane. Examples: epithelium of wall of pancreatic duct, epithelium of wall of duct of salivary gland." [FMA:63913] +subset: human_subset +subset: mouse_subset xref: FMA:63913 is_a: UBERON:0000486 {source="FMA"} ! multilaminar epithelium @@ -338563,6 +354570,8 @@ is_a: UBERON:0000486 {source="FMA"} ! multilaminar epithelium id: UBERON:0015764 name: dense regular elastic tissue def: "Regular connective tissue, which consists of fibroblasts and of intercellular matrix, which contains elastic fiber bundles oriented predominantly in definable directions." [FMA:64782] +subset: human_subset +subset: mouse_subset synonym: "dense elastic connective tissue" EXACT [FMA:64782] synonym: "dense regular elastic connective tissue" EXACT [FMA:64782] xref: FMA:64782 @@ -338573,6 +354582,8 @@ is_a: UBERON:0007845 {source="FMA"} ! regular connective tissue id: UBERON:0015766 name: epithelium of duct of salivary gland def: "An epithelium that is part of a duct of salivary gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "epithelium of salivary duct" EXACT [FMA:67682] synonym: "salivary duct epithelium" EXACT [FMA:67682] synonym: "salivary ductal epithelium" EXACT [FMA:67682] @@ -338587,6 +354598,8 @@ relationship: part_of UBERON:0001837 ! duct of salivary gland [Term] id: UBERON:0015777 name: transitional epithelium of prostatic urethra +subset: human_subset +subset: mouse_subset xref: FMA:74267 is_a: UBERON:0004787 ! urethra urothelium is_a: UBERON:0005911 {source="FMA"} ! endo-epithelium @@ -338597,6 +354610,8 @@ relationship: part_of UBERON:0001335 ! prostatic urethra id: UBERON:0015783 name: smooth muscle layer in fatty layer of subcutaneous tissue def: "A smooth muscle tissue that is part of a hypodermis." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscle layer in fatty layer of subcutaneous tissue" EXACT [FMA:77862] synonym: "stratum musculosum panniculi adiposi telae subcutaneae" EXACT OMO:0003011 [FMA:77862, FMA:TA] xref: FMA:77862 @@ -338609,6 +354624,8 @@ relationship: part_of UBERON:0002072 ! hypodermis id: UBERON:0015784 name: duct of olfactory gland def: "A duct that is part of a olfactory gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "olfactory gland duct" EXACT [] is_a: UBERON:0000058 ! duct is_a: UBERON:0004119 ! endoderm-derived structure @@ -338622,6 +354639,8 @@ relationship: part_of UBERON:0002232 ! olfactory gland id: UBERON:0015785 name: acinus of olfactory gland def: "An acinus that is part of a olfactory gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "acinar part of olfactory gland" EXACT [] synonym: "olfactory gland acinus" EXACT [] is_a: UBERON:0004119 ! endoderm-derived structure @@ -338636,6 +354655,8 @@ relationship: part_of UBERON:0002232 ! olfactory gland id: UBERON:0015786 name: respiratory segment of nasal mucosa def: "The portion of the nasal mucosa that is part of the respiratory system." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pars respiratoria tunicae mucosae nasi" EXACT OMO:0003011 [FMA:77198, FMA:TA] synonym: "respiratory zone of nasal mucosa" EXACT [FMA:77198] xref: FMA:77198 @@ -338651,6 +354672,8 @@ property_value: structure_notes "lined with ciliated pseudostratified columnar e id: UBERON:0015787 name: upper respiratory conduit def: "Any anatomical conduit which is part of the upper respiratory tract." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "respiratory conduit" RELATED [FMA:265132] xref: FMA:265132 is_a: UBERON:0004111 ! anatomical conduit @@ -338664,6 +354687,8 @@ property_value: external_definition "Anatomical cluster which consists a segment id: UBERON:0015788 name: olfactory apparatus chamber def: "An anatomical chamber that is part of the olfactory apparatus, consisting of cavity walls (nasal epithelium and mucosal layers) and the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: FMA:265136 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0015787 ! upper respiratory conduit @@ -338673,6 +354698,8 @@ relationship: part_of UBERON:0000004 ! nose id: UBERON:0015789 name: cranial or facial muscle subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "cranial-facial muscle" RELATED [EMAPA:25133] synonym: "cranial/facial muscle" EXACT [MA:0000579] synonym: "cranio-facial muscle" RELATED [EMAPA:25133] @@ -338687,6 +354714,8 @@ property_value: curator_notes "see also, 'facial nerve muscle', which is not pre id: UBERON:0015790 name: autopod skin def: "A zone of skin that is part of a autopod region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "paw skin" RELATED [MA:0003120] xref: EMAPA:32723 xref: MA:0003120 @@ -338699,6 +354728,8 @@ relationship: part_of UBERON:0002470 ! autopod region id: UBERON:0015791 name: digit connective tissue def: "A portion of connective tissue that is part of a digit." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:37290 {source="MA:th"} xref: MA:0003123 is_a: UBERON:0003587 ! limb connective tissue @@ -338711,6 +354742,7 @@ relationship: transformation_of UBERON:0010702 ! digit mesenchyme [Term] id: UBERON:0015792 name: prostate gland dorsal lobe +subset: mouse_subset xref: EMAPA:29808 xref: MA:0003124 is_a: UBERON:0001328 ! lobe of prostate @@ -338721,6 +354753,8 @@ relationship: part_of UBERON:0008808 ! prostate gland dorsolateral lobe id: UBERON:0015793 name: induseum griseum def: "Thin layer of cortex lying on the dorsal surface of the corpus callosum. It has been debated whether it is more related to the hippocampus or the olfactory bulb (Shipley et al., Olfactory System In Paxinos The Rat Nervous System, 2nd ed)." [NLX:49940] +subset: human_subset +subset: mouse_subset synonym: "gray stria of Lancisi" RELATED [NeuroNames:173] synonym: "gyrus epicallosus" RELATED [Wikipedia:Indusium_griseum] synonym: "gyrus indusium griseum" RELATED [Wikipedia:Indusium_griseum] @@ -338746,6 +354780,8 @@ relationship: part_of UBERON:0002665 {source="FMA"} ! supracallosal gyrus id: UBERON:0015794 name: left lung lobar bronchus epithelium def: "An epithelium that is part of a lobar bronchus of left lung." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:17658 xref: MA:0003135 is_a: UBERON:0002339 ! epithelium of lobar bronchus @@ -338758,6 +354794,8 @@ relationship: part_of UBERON:0003405 ! lobar bronchus of left lung id: UBERON:0015795 name: right lung lobar bronchus epitheium def: "An epithelium that is part of a lobar bronchus of right lung." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:17666 xref: MA:0003136 is_a: UBERON:0002339 ! epithelium of lobar bronchus @@ -338770,6 +354808,8 @@ relationship: part_of UBERON:0003404 ! lobar bronchus of right lung id: UBERON:0015796 name: liver blood vessel def: "A blood vessel that is part of a liver." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hepatic blood vessel" RELATED [EMAPA:35498] xref: EMAPA:35498 xref: MA:0003137 @@ -338783,6 +354823,8 @@ relationship: part_of UBERON:0002107 ! liver id: UBERON:0015800 name: taenia tectum of brain def: "A continuation ventrally of the supracallosal gyrus beyond the rostrum of the corpus callosum. It is demonstrated histologically by Nissl stain. In the human ( Anthoney-1994 ) and the macaque ( Paxinos-2004 ) it lies on the rostral surface of the lamina terminalis and is considered identical to or part of the paraterminal gyrus. In the rat ( Swanson-1998 ) and the mouse ( Paxinos-2001 ) it is located similarly in relation to the supracallosal gyrus, however, it is a more prominent layered structure that extends rostrally on the medial surface overlying the anterior olfactory nucleus. It is considered part of the olfactory areas (rodent) of the cerebral cortex. In rodents it consists of two parts, the dorsal tenia tecta and the ventral tenia tecta. Note that some authors use the term 'tenia tecta' or 'taenia tecta' as a synonym for the lateral longitudinal stria ( Riley-1943 )." [neuronames:1870] +subset: human_subset +subset: mouse_subset synonym: "taenia tecta" EXACT [MA:0003150] synonym: "taenia tecta" RELATED OMO:0003011 [NeuroNames:1870] synonym: "taenia tectum" EXACT [DHBA:10305] @@ -338805,6 +354847,8 @@ relationship: part_of UBERON:0002665 ! supracallosal gyrus id: UBERON:0015807 name: ear epithelium def: "An epithelium that is part of a ear." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:32800 xref: MA:0003161 is_a: UBERON:0019304 ! sensory organ epithelium @@ -338816,6 +354860,8 @@ relationship: part_of UBERON:0001690 ! ear id: UBERON:0015808 name: eye epithelium def: "An epithelium that is part of a camera-type eye." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:35957 xref: MA:0003162 is_a: UBERON:0007625 ! pigment epithelium of eye @@ -338828,6 +354874,8 @@ relationship: part_of UBERON:0000019 ! camera-type eye id: UBERON:0015813 name: middle ear epithelium def: "An epithelium that is part of a middle ear." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:35673 xref: MA:0003169 is_a: UBERON:0015807 ! ear epithelium @@ -338839,6 +354887,8 @@ relationship: part_of UBERON:0001756 ! middle ear id: UBERON:0015814 name: outer ear epithelium def: "An epithelium that is part of a external ear." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:35956 xref: MA:0003170 is_a: UBERON:0015807 ! ear epithelium @@ -338855,6 +354905,8 @@ replaced_by: UBERON:0002275 [Term] id: UBERON:0015828 name: cerebellum ventricular layer +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001153 xref: EMAPA:17790 xref: MA:0003187 @@ -338865,6 +354917,8 @@ property_value: editor_note "TODO - disambiguate between developing and adult st [Term] id: UBERON:0015829 name: forebrain ventricular layer +subset: human_subset +subset: mouse_subset xref: EMAPA:32921 xref: MA:0003190 is_a: UBERON:0011215 ! central nervous system cell part cluster @@ -338876,6 +354930,8 @@ relationship: part_of UBERON:0005281 ! ventricular system of central nervous sys id: UBERON:0015833 name: foregut epithelium def: "An epithelium that is part of a foregut." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:32922 xref: MA:0003204 is_a: UBERON:0003929 ! digestive tract epithelium @@ -338888,6 +354944,8 @@ id: UBERON:0015834 name: duodenum lamina propria def: "A lamina propria that is part of a duodenum." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "duodenal lamina propria" EXACT [FMA:15972] synonym: "lamina propria mucosae of duodenum" EXACT [FMA:15972] synonym: "lamina propria of duodenum" EXACT [FMA:15972] @@ -338906,6 +354964,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0015837 name: incisor dental pulp def: "A dental pulp that is part of a incisor tooth." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:35429 xref: FMA:294459 xref: MA:0003221 @@ -338918,6 +354978,8 @@ property_value: external_ontology_notes "FMA has classes for very specific sublc [Term] id: UBERON:0015838 name: molar dental pulp +subset: human_subset +subset: mouse_subset xref: EMAPA:35576 xref: FMA:294469 xref: MA:0003222 @@ -338930,6 +354992,8 @@ property_value: external_ontology_notes "FMA has classes for very specific sublc [Term] id: UBERON:0015839 name: molar epithelium +subset: human_subset +subset: mouse_subset synonym: "epithelium of molar" EXACT [] synonym: "epithelium of molar tooth" EXACT [] xref: EMAPA:32878 @@ -338943,6 +355007,8 @@ relationship: part_of UBERON:0003655 ! molar tooth id: UBERON:0015840 name: incisor dental lamina def: "A dental lamina that is part of a incisor tooth." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:32896 xref: MA:0003225 is_a: UBERON:0003355 ! epithelium of incisor @@ -338955,6 +355021,8 @@ relationship: part_of UBERON:0003355 ! epithelium of incisor [Term] id: UBERON:0015841 name: molar dental lamina +subset: human_subset +subset: mouse_subset xref: EMAPA:32879 xref: MA:0003226 is_a: UBERON:0004825 ! dental lamina @@ -338968,6 +355036,8 @@ relationship: part_of UBERON:0015839 ! molar epithelium id: UBERON:0015842 name: incisor enamel organ def: "A tooth enamel organ that is part of a incisor tooth." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:32895 xref: MA:0003227 is_a: UBERON:0005176 ! tooth enamel organ @@ -338979,6 +355049,8 @@ relationship: part_of UBERON:0003355 ! epithelium of incisor [Term] id: UBERON:0015843 name: molar enamel organ +subset: human_subset +subset: mouse_subset xref: EMAPA:32880 xref: MA:0003228 is_a: UBERON:0005176 ! tooth enamel organ @@ -338990,6 +355062,8 @@ relationship: part_of UBERON:0015839 ! molar epithelium [Term] id: UBERON:0015844 name: molar dental papilla +subset: human_subset +subset: mouse_subset synonym: "molar odontogenic papilla" EXACT [OBOL:automatic] synonym: "molar tooth odontogenic papilla" EXACT [OBOL:automatic] xref: EMAPA:32882 @@ -339004,6 +355078,8 @@ relationship: part_of UBERON:0003655 ! molar tooth id: UBERON:0015846 name: incisor mesenchyme def: "An odontogenic mesenchyme that is part of a incisor tooth." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:32894 xref: MA:0003229 is_a: UBERON:0003856 ! uncondensed odontogenic mesenchyme @@ -339015,6 +355091,8 @@ relationship: part_of UBERON:0001098 ! incisor tooth id: UBERON:0015847 name: upper left incisor tooth def: "A upper jaw incisor that is in_the_left_side_of a dentition." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: SCTID:245585000 is_a: UBERON:0003450 ! upper jaw incisor is_a: UBERON:0015212 ! lateral structure @@ -339026,6 +355104,8 @@ relationship: in_left_side_of UBERON:0003672 ! dentition id: UBERON:0015848 name: incisor tusk def: "An incisor tooth that protrudes beyond the mouth." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001098 ! incisor tooth is_a: UBERON:0010879 ! tusk intersection_of: UBERON:0001098 ! incisor tooth @@ -339039,6 +355119,7 @@ relationship: present_in_taxon NCBITaxon:9780 ! Elephantidae id: UBERON:0015849 name: canine tusk def: "An cuspid tooth that protrudes beyond the mouth." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset is_a: UBERON:0003674 ! cuspid is_a: UBERON:0010879 ! tusk intersection_of: UBERON:0003674 ! cuspid @@ -339053,6 +355134,8 @@ relationship: present_in_taxon NCBITaxon:9823 ! Sus scrofa [Term] id: UBERON:0015850 name: upper left incisor tusk +subset: human_subset +subset: mouse_subset is_a: UBERON:0015847 ! upper left incisor tooth is_a: UBERON:0015848 ! incisor tusk intersection_of: UBERON:0003450 ! upper jaw incisor @@ -339066,6 +355149,8 @@ relationship: in_left_side_of UBERON:0003672 ! dentition [Term] id: UBERON:0015851 name: upper right incisor tusk +subset: human_subset +subset: mouse_subset is_a: UBERON:0003450 ! upper jaw incisor is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0015848 ! incisor tusk @@ -339113,6 +355198,8 @@ relationship: part_of UBERON:0015852 ! narwhal tusk id: UBERON:0015854 name: interpedicular line def: "An anatomical line that connects two successive vertebral pedicles. The length of this line is known as the interpedicular distance." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "inter-vertebral-pedicle line" EXACT [] synonym: "interpedicular distance" RELATED [HP:0008450] is_a: UBERON:0006800 ! anatomical line @@ -339125,6 +355212,8 @@ relationship: part_of UBERON:0001130 ! vertebral column id: UBERON:0015855 name: ventral ectodermal ridge def: "A thickening of the surface ectoderm on the ventral side of the embryonic tail which resembles the apical ectodermal ridge of the limb bud." [PMID:7486014] +subset: human_subset +subset: mouse_subset synonym: "VER" RELATED OMO:0003000 [PMID:7486014] xref: EMAPA:36491 is_a: UBERON:0002050 ! embryonic structure @@ -339136,6 +355225,8 @@ property_value: development_notes "A group of ectodermal cells that serves as an id: UBERON:0015857 name: parotid lymph node def: "A lymph node found near the parotid gland." [Wikipedia:Parotid_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "parotid node" EXACT [FMA:61216] xref: FMA:61216 xref: MA:0003088 @@ -339149,6 +355240,8 @@ relationship: part_of UBERON:0000033 ! head id: UBERON:0015859 name: hepatic lymph node def: "Any of the lymph nodes adjacent to the stomach and duodenum." [ncithesaurus:Hepatic_Lymph_Node] +subset: human_subset +subset: mouse_subset synonym: "hepatic node" EXACT [FMA:12798] synonym: "lymphoglandulae hepaticae" EXACT OMO:0003011 [Wikipedia:Hepatic_lymph_nodes] synonym: "lymphoglandulæ hepaticæ" EXACT OMO:0003011 [Wikipedia:Hepatic_lymph_nodes] @@ -339165,6 +355258,8 @@ is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node [Term] id: UBERON:0015860 name: visceral abdominal lymph node +subset: human_subset +subset: mouse_subset xref: FMA:66178 is_a: UBERON:0002507 {source="FMA"} ! abdominal lymph node @@ -339172,6 +355267,8 @@ is_a: UBERON:0002507 {source="FMA"} ! abdominal lymph node id: UBERON:0015863 name: gastric lymph node def: "A lymph node along the left gastric artery or greater omentum." [ncithesaurus:Gastric_Lymph_Node] +subset: human_subset +subset: mouse_subset synonym: "gastric node" EXACT [FMA:12796] synonym: "nodi lymphoidei gastrici" EXACT OMO:0003011 [Wikipedia:Gastric_lymph_nodes] xref: FMA:12796 @@ -339186,6 +355283,8 @@ property_value: external_definition "Single (unpaired) lymph node in the lesser id: UBERON:0015865 name: pancreaticosplenic lymph node def: "Lymph nodes of the pancreatic tail and spleen, receiving afferents from both organs plus the greater curvature of the stomach; they drain to the celiac lymph nodes." [http://medical-dictionary.thefreedictionary.com/pancreaticosplenic+lymph+nodes] +subset: human_subset +subset: mouse_subset synonym: "nodi lymphatici panoccidianuperiores" RELATED [http://medical-dictionary.thefreedictionary.com/pancreaticosplenic+lymph+nodes] synonym: "nodi lymphoidei pancreaticolienales" RELATED [http://medical-dictionary.thefreedictionary.com/pancreaticosplenic+lymph+nodes] synonym: "nodi lymphoidei pancreaticosplenales" RELATED [http://medical-dictionary.thefreedictionary.com/pancreaticosplenic+lymph+nodes] @@ -339201,6 +355300,8 @@ property_value: editor_note "Consider obsoleting - this is apparently an obsolet [Term] id: UBERON:0015866 name: pyloric lymph node +subset: human_subset +subset: mouse_subset synonym: "pyloric node" EXACT [FMA:12802] xref: FMA:12802 xref: SCTID:280127001 @@ -339209,6 +355310,8 @@ is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node [Term] id: UBERON:0015867 name: cystic lymph node +subset: human_subset +subset: mouse_subset synonym: "cystic node" EXACT [FMA:12804] xref: FMA:12804 xref: SCTID:46081008 @@ -339217,6 +355320,8 @@ is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node [Term] id: UBERON:0015868 name: lymph node of epiploic foramen +subset: human_subset +subset: mouse_subset synonym: "epiploic foramen lymph node" RELATED [FMA:12805] synonym: "lymph node of anterior border of epiploic foramen" EXACT [FMA:12805] synonym: "lymph node of anterior border of omental foramen" EXACT [FMA:12805] @@ -339231,6 +355336,8 @@ is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node id: UBERON:0015869 name: retropharyngeal lymph node def: "The retropharyngeal lymph nodes, from one to three in number, lie in the buccopharyngeal fascia, behind the upper part of the pharynx and in front of the arch of the atlas, being separated, however, from the latter by the Longus capitis. Their afferents drain the nasal cavities, the nasal part of the pharynx, and the auditory tubes. Their efferents pass to the superior deep cervical glands. They are in the retropharyngeal space." [Wikipedia:Retropharyngeal_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "retropharyngeal glands" RELATED [Wikipedia:Retropharyngeal_lymph_nodes] synonym: "retropharyngeal lymph node" RELATED [Wikipedia:Retropharyngeal_lymph_nodes] synonym: "retropharyngeal node" EXACT [FMA:61237] @@ -339247,6 +355354,8 @@ is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node id: UBERON:0015870 name: lymph node of head def: "A lymph node that is part of a head." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:61212 xref: SCTID:155136006 is_a: UBERON:0000029 ! lymph node @@ -339258,6 +355367,8 @@ relationship: part_of UBERON:0000033 ! head id: UBERON:0015871 name: facial lymph node def: "Any of the lymph nodes that are part of a face." [http://www.bartleby.com/107/177.html, Wikipedia:Facial_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "buccal lymph node" EXACT [FMA:61222] xref: FMA:61222 xref: SCTID:279139005 @@ -339273,6 +355384,8 @@ id: UBERON:0015872 name: mandibular lymph node def: "The mandibular lymph node is a lymph node found near the jaw." [Wikipedia:Mandibular_lymph_node] comment: Editor nodes: consider merging with submandibular, at least for mouse, see http://www.ncbi.nlm.nih.gov/pubmed/16624319 +subset: human_subset +subset: mouse_subset synonym: "lymphonodi mandibulares" RELATED OMO:0003011 [Wikipedia:Mandibular_lymph_node] synonym: "mandibular node" EXACT [FMA:61227] synonym: "nodus lymphoideus mandibularis" RELATED OMO:0003011 [Wikipedia:Mandibular_lymph_node] @@ -339288,6 +355401,8 @@ property_value: external_definition "In mice, Rostromedial to the sublingual and id: UBERON:0015873 name: heel skin def: "A zone of skin that is part of a heel." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "skin of heel" EXACT [] xref: EMAPA:37354 {source="MA:th"} xref: MA:0003104 @@ -339301,6 +355416,8 @@ relationship: part_of UBERON:0015875 ! heel id: UBERON:0015875 name: heel def: "The part of the foot that is the projection of the calcaneus." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Heel] +subset: human_subset +subset: mouse_subset synonym: "calcaneal region" EXACT [FMA:24994] synonym: "heel region" EXACT [FMA:24994] synonym: "regio calcanea" EXACT [FMA:TA] @@ -339318,6 +355435,8 @@ relationship: part_of UBERON:0004454 ! tarsal region id: UBERON:0015876 name: pelvic lymph node def: "Any lymph node within the abdominal pelvic region." [ncithesaurus:Pelvic_Lymph_Node] +subset: human_subset +subset: mouse_subset synonym: "lymph node of pelvis" EXACT [FMA:12800] synonym: "pelvic node" RELATED [] xref: FMA:12800 @@ -339331,6 +355450,8 @@ relationship: part_of UBERON:0002355 ! pelvic region of trunk [Term] id: UBERON:0015877 name: parietal pelvic lymph node +subset: human_subset +subset: mouse_subset synonym: "paracervical lymph node" RELATED [FMA:66193] xref: FMA:66193 is_a: UBERON:0015876 {source="FMA"} ! pelvic lymph node @@ -339340,6 +355461,8 @@ id: UBERON:0015878 name: common iliac lymph node def: "The external iliac lymph nodes, from eight to ten in number, lie along the external iliac vessels. They are arranged in three groups, one on the lateral, another on the medial, and a third on the anterior aspect of the vessels; the third group is, however, sometimes absent. Their principal afferents are derived from the inguinal lymph nodes, the deep lymphatics of the abdominal wall below the umbilicus and of the adductor region of the thigh, and the lymphatics from the glans penis vel clitoridis, the membranous urethra, the prostate, the fundus of the urinary bladder, the cervix uteri, and upper part of the vagina." [Wikipedia:External_iliac_lymph_nodes] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "common iliac node" EXACT [FMA:12806] synonym: "external iliac glands" RELATED [Wikipedia:External_iliac_lymph_nodes] synonym: "external iliac lymph gland" RELATED [Wikipedia:External_iliac_lymph_nodes] @@ -339359,6 +355482,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0015880 name: external iliac lymph node subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "external iliac node" EXACT [FMA:16646] xref: FMA:16646 xref: NCIT:C88143 @@ -339372,6 +355497,8 @@ id: UBERON:0015881 name: internal iliac lymph node def: "The internal iliac lymph nodes (or hypogastric) surround the internal iliac artery and its branches (the hypogastric vessels), and receive the lymphatics corresponding to the distribution of the branches of it, i. e. , they receive lymphatics from all the pelvic viscera, from the deeper parts of the perineum, including the membranous and cavernous portions of the urethra, and from the buttock and back of the thigh. It does not receive lymph from the ovary, testis, or superior half of the rectum; the gonads drain to the paraaortic lymph nodes, while the superior half of the rectum drains to the pararectal lymph nodes." [Wikipedia:Internal_iliac_lymph_nodes] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "internal iliac node" EXACT [FMA:16654] xref: FMA:16654 xref: NCIT:C88142 @@ -339385,6 +355512,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0015883 name: gluteal lymph node +subset: human_subset +subset: mouse_subset synonym: "gluteal node" EXACT [FMA:16657] xref: FMA:16657 xref: SCTID:276154000 @@ -339393,6 +355522,8 @@ is_a: UBERON:0015877 {source="FMA"} ! parietal pelvic lymph node [Term] id: UBERON:0015884 name: presymphysial lymph node +subset: human_subset +subset: mouse_subset synonym: "presymphysial node" EXACT [FMA:16667] xref: FMA:16667 xref: SCTID:279448009 @@ -339401,6 +355532,8 @@ is_a: UBERON:0015877 {source="FMA"} ! parietal pelvic lymph node [Term] id: UBERON:0015885 name: cymba conchae of pinna +subset: human_subset +subset: mouse_subset synonym: "cymba conchae of auricle" EXACT [FMA:61082] xref: FMA:61082 xref: NCIT:C32420 @@ -339413,6 +355546,8 @@ relationship: part_of UBERON:0006203 {source="FMA"} ! conchal part of pinna id: UBERON:0015886 name: root of nail def: "The part of the nail plate that extends into the dermis (nail matrix)." [http://www.histology.leeds.ac.uk/skin/nails.php] +subset: human_subset +subset: mouse_subset synonym: "nail groove" EXACT [] synonym: "nail root" EXACT [FMA:60128] xref: FMA:60128 @@ -339426,6 +355561,8 @@ relationship: part_of UBERON:0001705 {source="FMA"} ! nail id: UBERON:0015895 name: proximal deep inguinal lymph node def: "One of the deep inguinal lymph nodes located in or adjacent to the femoral canal; sometimes mistaken for a femoral hernia when enlarged." [BTO:0004550] +subset: human_subset +subset: mouse_subset synonym: "node of Cloquet" RELATED [BTO:0004550] synonym: "nodus inguinales profundi proximalis" EXACT [FMA:TA] synonym: "nodus lymphoideus inguinales profundi proximalis" EXACT OMO:0003011 [FMA:44303, FMA:TA] @@ -339444,6 +355581,8 @@ is_a: UBERON:0009006 {source="FMA"} ! deep inguinal lymph node id: UBERON:0015917 name: superficial lymph node def: "A lymph node that is located close to the surface." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: FMA:12767 xref: NCIT:C102716 is_a: UBERON:0000029 ! lymph node @@ -339455,6 +355594,8 @@ relationship: part_of UBERON:0035549 ! vasculature of integument id: UBERON:0015918 name: deep lymph node def: "A lymph node that is located deeper within the organism, further from the surface." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: FMA:12768 is_a: UBERON:0000029 ! lymph node intersection_of: UBERON:0000029 ! lymph node @@ -339479,6 +355620,8 @@ is_obsolete: true [Term] id: UBERON:0015922 name: accessory mandibular lymph node +subset: human_subset +subset: mouse_subset is_a: UBERON:0015871 ! facial lymph node property_value: external_definition "Dorsolateral to the mandibular lymph node." xsd:string {source="PMID:16624319", taxon="NCBITaxon:10090"} @@ -339486,6 +355629,8 @@ property_value: external_definition "Dorsolateral to the mandibular lymph node." id: UBERON:0015923 name: superficial parotid lymph node def: "A parotid lymph node that is located superficially." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "superficial parotid node" EXACT [FMA:61217] xref: FMA:61217 xref: SCTID:279141006 @@ -339500,6 +355645,8 @@ property_value: external_definition "Rostromedial to the sublingual and mandibul [Term] id: UBERON:0015925 name: superficial intraparotid lymph node +subset: human_subset +subset: mouse_subset synonym: "superficial intraparotid node" EXACT [] xref: SCTID:68339009 is_a: UBERON:0015917 ! superficial lymph node @@ -339511,6 +355658,8 @@ relationship: part_of UBERON:0035549 ! vasculature of integument [Term] id: UBERON:0015926 name: cranial deep lymph node +subset: human_subset +subset: mouse_subset synonym: "cranial deep node" EXACT [] is_a: UBERON:0015870 ! lymph node of head relationship: part_of UBERON:0000033 ! head @@ -339520,6 +355669,8 @@ property_value: external_definition "Medial to the external jugular vein and ste id: UBERON:0016374 name: sciatic lymph node def: "A lymph node that is medial to the gluteus superficialis m., caudal to gluteus medius m. and sciatic nerve lymph node." [PMID:16624319] +subset: human_subset +subset: mouse_subset xref: MA:0002884 is_a: UBERON:0000029 {source="MA"} ! lymph node is_a: UBERON:0016398 ! lymph node of lower limb @@ -339531,6 +355682,8 @@ id: UBERON:0016378 name: ileocolic lymph node def: "One of the lymph nodes that form a chain around the ileocolic artery." [Wikipedia:Ileocolic_lymph_nodes] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ileocecocolic lymph node" NARROW [MA:0003065, ncithesaurus:Ileocecocolic_Lymph_Node] synonym: "ileocolic node" RELATED [FMA:16611] synonym: "nodi lymphoidei ileocolici" EXACT OMO:0003011 [Wikipedia:Ileocolic_lymph_nodes] @@ -339548,6 +355701,8 @@ property_value: external_definition "A lymph node at the ileocecocolic junction. [Term] id: UBERON:0016382 name: prescapular lymph node +subset: human_subset +subset: mouse_subset xref: EMAPA:37723 {source="MA:th"} xref: MA:0003069 xref: NCIT:C77654 @@ -339558,6 +355713,8 @@ id: UBERON:0016386 name: paraaortic lymph node def: "The paraaortic lymph nodes (also known as para-aortic, periaortic, and peri-aortic) are a group of lymph nodes that lie in front of the lumbar vertebral bodies near the aorta. These lymph nodes receive drainage from the lower gastrointestinal tract and the pelvic organs." [Wikipedia:Paraaortic_lymph_node] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lateral aortic lymph node" EXACT [FMA:16604] synonym: "lateral aortic node" EXACT [FMA:16604] synonym: "latero-aortic lymph node" RELATED [FMA:16604] @@ -339574,6 +355731,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0016390 name: auricular lymph node +subset: human_subset +subset: mouse_subset xref: MA:0003092 is_a: UBERON:0000029 {source="MA"} ! lymph node relationship: dubious_for_taxon NCBITaxon:10090 {source="PMID:16624319"} ! Mus musculus @@ -339581,6 +355740,8 @@ relationship: dubious_for_taxon NCBITaxon:10090 {source="PMID:16624319"} ! Mus m [Term] id: UBERON:0016391 name: thymic lymph node +subset: human_subset +subset: mouse_subset xref: MA:0003118 is_a: UBERON:0000029 {source="MA"} ! lymph node @@ -339588,6 +355749,8 @@ is_a: UBERON:0000029 {source="MA"} ! lymph node id: UBERON:0016392 name: mastoid lymph node def: "The mastoid lymph nodes (retroauricular lymph nodes, posterior auricular glands), usually two in number, are situated on the mastoid insertion of the Sternocleidomastoideus, beneath the Auricularis posterior. Their afferent vessels drain the posterior part of the temporoparietal region, the upper part of the cranial surface of the auricula or pinna, and the back of the external acoustic meatus; their efferents pass to the superior deep cervical glands." [Wikipedia:Mastoid_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "mastoid glands" RELATED [Wikipedia:Mastoid_lymph_nodes] synonym: "mastoid node" EXACT [FMA:61215] synonym: "postauricular lymph node" EXACT [UBERON:cjm] @@ -339605,6 +355768,7 @@ is_a: UBERON:0015870 {source="FMA"} ! lymph node of head id: UBERON:0016393 name: deep parotid lymph node def: "The deep parotid lymph nodes are lymph nodes found below the parotid gland. The afferents of the subparotid glands drain the nasal part of the pharynx and the posterior parts of the nasal cavities. Their efferents pass to the superior deep cervical glands." [Wikipedia:Deep_parotid_lymph_nodes] +subset: human_subset synonym: "deep parotid node" EXACT [FMA:61218] xref: FMA:61218 xref: SCTID:279142004 @@ -339617,6 +355781,7 @@ relationship: never_in_taxon NCBITaxon:10090 {source="PMID:16624319"} ! Mus musc id: UBERON:0016394 name: anterior auricular lymph node def: "The preauricular deep parotid lymph nodes (anterior auricular glands or preauricular glands), from one to three in number, lie immediately in front of the tragus. Their afferents drain the lateral surface of the auricula and the skin of the adjacent part of the temporal region; their efferents pass to the superior deep cervical glands." [Wikipedia:Preauricular_deep_parotid_lymph_nodes] +subset: human_subset synonym: "anterior auricular glands" RELATED [Wikipedia:Preauricular_deep_parotid_lymph_nodes] synonym: "pre-auricular lymph node" EXACT [FMA:61219] synonym: "pre-auricular lymph nodes" RELATED [Wikipedia:Preauricular_deep_parotid_lymph_nodes] @@ -339635,6 +355800,7 @@ relationship: dubious_for_taxon NCBITaxon:10090 {source="PMID:16624319"} ! Mus m id: UBERON:0016395 name: infra-auricular lymph node def: "The infra-auricular deep parotid lymph nodes are a group of lymph nodes found underneath the ear." [Wikipedia:Infra-auricular_deep_parotid_lymph_nodes] +subset: human_subset synonym: "infra-auricular deep node" EXACT [] synonym: "infra-auricular deep parotid lymph node" EXACT [] synonym: "infra-auricular deep parotid node" EXACT [] @@ -339647,6 +355813,7 @@ is_a: UBERON:0016393 {source="FMA"} ! deep parotid lymph node [Term] id: UBERON:0016396 name: intraglandular lymph node +subset: human_subset synonym: "intraglandular node" EXACT [FMA:61221] xref: FMA:61221 is_a: UBERON:0016393 {source="FMA"} ! deep parotid lymph node @@ -339655,6 +355822,8 @@ is_a: UBERON:0016393 {source="FMA"} ! deep parotid lymph node id: UBERON:0016397 name: submental lymph node def: "The submental lymph nodes (or suprahyoid) are situated between the anterior bellies of the Digastrici. Their afferents drain the central portions of the lower lip and floor of the mouth and the apex of the tongue. Their efferents pass partly to the submandibular lymph nodes and partly to a gland of the deep cervical group situated on the internal jugular vein at the level of the cricoid cartilage." [Wikipedia:Submental_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "level Ia neck node" EXACT [FMA:61229] synonym: "submental glands" RELATED [Wikipedia:Submental_lymph_nodes] synonym: "submental node" EXACT [FMA:61229] @@ -339669,6 +355838,8 @@ relationship: dubious_for_taxon NCBITaxon:10090 {source="PMID:16624319"} ! Mus m id: UBERON:0016398 name: lymph node of lower limb def: "A lymph node that is part of a hindlimb." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:44310 xref: SCTID:361109000 is_a: UBERON:0000029 ! lymph node @@ -339680,6 +355851,8 @@ relationship: part_of UBERON:0002103 ! hindlimb id: UBERON:0016399 name: lymph node of upper limb def: "A lymph node that is part of a forelimb." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:44311 xref: SCTID:276155004 is_a: UBERON:0000029 ! lymph node @@ -339691,6 +355864,8 @@ relationship: part_of UBERON:0002102 ! forelimb id: UBERON:0016400 name: infrapatellar fat pad def: "The infrapatellar fat pad, also known as Hoffa's fat pad, is a cylindrical piece of fat that is situated under and behind the patella bone within the knee." [Wikipedia:Infrapatellar_fat_pad] +subset: human_subset +subset: mouse_subset xref: FMA:58772 xref: SCTID:282128003 xref: Wikipedia:Infrapatellar_fat_pad @@ -339704,6 +355879,8 @@ relationship: part_of UBERON:0001465 ! knee [Term] id: UBERON:0016401 name: pancreaticoduodenal lymph node +subset: human_subset +subset: mouse_subset synonym: "pancreaticoduodenal node" EXACT [FMA:16623] xref: FMA:16623 xref: SCTID:281152007 @@ -339717,6 +355894,8 @@ property_value: external_definition "Single (unpaired) lymph node in the mesoduo id: UBERON:0016402 name: mesocolic lymph node subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:300965 xref: Wikipedia:Mesocolic_lymph_nodes is_a: UBERON:0039168 {source="FMA"} ! colic lymph node @@ -339731,6 +355910,8 @@ property_value: external_definition "mesocolic lymph nodes: nodes located in the id: UBERON:0016403 name: thoracic wall def: "The thoracic wall (or chest wall) is the boundary of the thoracic cavity. The bony portion is known as the thoracic cage. However, the wall also includes muscle, skin, and fascia." [Wikipedia:Thoracic_wall] +subset: human_subset +subset: mouse_subset synonym: "chest wall" RELATED [Wikipedia:Thoracic_wall] xref: FMA:10428 xref: MESH:D035441 @@ -339743,6 +355924,8 @@ property_value: external_definition "Subdivision of chest wall which includes th id: UBERON:0016404 name: cervical vertebral arch joint def: "A vertebral arch joint that is part of a cervical region of vertebral column." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cervical facet joint" EXACT [FMA:13668] synonym: "joint of cervical vertebral arch" EXACT [FMA:13668] @@ -339760,6 +355943,8 @@ id: UBERON:0016405 name: pulmonary capillary def: "A capillary that is part of a lung." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "capillary of lung" EXACT [FMA:14121] xref: FMA:14121 @@ -339774,6 +355959,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0016408 name: corona of glans penis def: "The circumference of the base of the glans forms a rounded projecting border, the corona of the glans penis, overhanging a deep retroglandular sulcus, behind which is the neck of the penis." [Wikipedia:Corona_of_glans_penis] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "corona glandis" RELATED OMO:0003011 [Wikipedia:Corona_of_glans_penis] synonym: "corona of penis" EXACT [] @@ -339789,6 +355976,8 @@ relationship: part_of UBERON:0001299 {source="FMA"} ! glans penis [Term] id: UBERON:0016409 name: base of glans penis +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "glans penile base" EXACT [FMA:19649] xref: FMA:19649 @@ -339801,6 +355990,8 @@ relationship: part_of UBERON:0001299 {source="FMA"} ! glans penis id: UBERON:0016410 name: male breast def: "A breast that is part of a male organism." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "mamma masculina" EXACT [FMA:19901] xref: FMA:19901 @@ -339821,6 +356012,8 @@ consider: UBERON:0036014 [Term] id: UBERON:0016412 name: central part of body of bony vertebral centrum +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "central part of body of vertebra" EXACT [FMA:24003] xref: FMA:24003 @@ -339830,6 +356023,8 @@ relationship: part_of UBERON:0001075 {source="FMA"} ! bony vertebral centrum [Term] id: UBERON:0016413 name: medullary cavity of long bone +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "central medullary cavity of long bone" RELATED [FMA:24023] xref: FMA:24023 @@ -339842,6 +356037,8 @@ relationship: part_of UBERON:0002495 ! long bone id: UBERON:0016416 name: anterior chest def: "Subdivision of thorax which is anterior to the plane of the posterior boundary of the middle mediastinum." [FMA:24816] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior thoracic region" EXACT [FMA:24816] synonym: "front of chest" EXACT [FMA:24816] @@ -339855,6 +356052,8 @@ relationship: part_of UBERON:0001443 {source="FMA"} ! chest id: UBERON:0016418 name: nasion def: "The intersection of the frontal and two nasal bones of the human skull. Its manifestation on the visible surface of the face is a distinctly depressed area directly between the eyes, just superior to the bridge of the nose." [Wikipedia:Nasion] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:264779 xref: Wikipedia:Nasion @@ -339869,6 +356068,8 @@ relationship: part_of UBERON:0003129 ! skull [Term] id: UBERON:0016419 name: bony part of vertebral arch +subset: human_subset +subset: mouse_subset synonym: "bony part of arch of vertebra" EXACT [FMA:29741] xref: FMA:29741 is_a: UBERON:0005913 ! zone of bone organ @@ -339878,6 +356079,8 @@ relationship: part_of UBERON:0003861 {source="FMA"} ! neural arch id: UBERON:0016422 name: compact bone of long bone def: "A compact bone tissue that is part of a bone tissue of long bone." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:32674 is_a: UBERON:0001439 ! compact bone tissue @@ -339890,6 +356093,8 @@ relationship: part_of UBERON:0005808 ! bone tissue of long bone id: UBERON:0016423 name: compact bone of diaphysis def: "A compact bone tissue that is part of a diaphysis." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:32678 is_a: UBERON:0001439 ! compact bone tissue @@ -339902,6 +356107,8 @@ relationship: part_of UBERON:0004769 ! diaphysis id: UBERON:0016425 name: epiphyseal plate of radius def: "An epiphyseal plate that is part of a radius bone." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:34354 is_a: UBERON:0002516 ! epiphyseal plate @@ -339914,6 +356121,8 @@ relationship: part_of UBERON:0001423 ! radius bone [Term] id: UBERON:0016426 name: proximal interphalangeal joint of little finger +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:35324 is_a: UBERON:0007732 ! interphalangeal joint of manual digit 5 @@ -339927,6 +356136,8 @@ id: UBERON:0016430 name: palmar branch of median nerve def: "The palmar branch of the median nerve is a branch of the median nerve which arises at the lower part of the forearm and innervates skin of proximal central palm and thenar eminence." [http://medical-dictionary.thefreedictionary.com/palmar+branch+of+median+nerve, Wikipedia:Palmar_branch_of_the_median_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "median nerve palmar branch" EXACT [FMA:44836] synonym: "palmar branch of anterior interosseous nerve" EXACT [FMA:44836] @@ -339948,6 +356159,8 @@ property_value: structure_notes "does not pass through the carpal tunnel" xsd:st id: UBERON:0016435 name: chest wall def: "Subdivision of thorax which includes all structures from the skin to the costal pleura. Examples: There is only one chest wall." [FMA:50060] +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: EMAPA:37233 {source="MA:th"} xref: FMA:50060 @@ -339963,6 +356176,8 @@ relationship: part_of UBERON:0001443 ! chest id: UBERON:0016440 name: glabella region of bone def: "A zone of the frontal bone that connects the supraorbital rirdges." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Glabella] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "glabella" BROAD [FMA:52851] synonym: "glabellar surface of frontal bone" EXACT [FMA:57136] @@ -339981,6 +356196,8 @@ relationship: part_of UBERON:0034766 ! glabella region id: UBERON:0016442 name: median palatine suture def: "The line of junction between the horizontal parts of the palatine bones that extends from both sides of the skull to form the posterior part of the hard palate." [http://medical-dictionary.thefreedictionary.com/median+palatine+suture] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "median palatine suture of skull" EXACT [FMA:52966] synonym: "middle palatine suture of skull" EXACT [FMA:52966] @@ -339995,6 +356212,8 @@ relationship: connects UBERON:0001682 ! palatine bone id: UBERON:0016446 name: hair of head def: "A strand of hair that is part of a head." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hair of scalp" NARROW [FMA:54241] synonym: "head hair" EXACT [FMA:54241] @@ -340008,6 +356227,8 @@ relationship: part_of UBERON:0000033 ! head id: UBERON:0016447 name: hair of trunk def: "A strand of hair that is part of a trunk." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "trunk hair" EXACT [FMA:54250] xref: FMA:54250 @@ -340019,6 +356240,7 @@ relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0016452 name: upper secondary premolar tooth +subset: human_subset subset: pheno_slim synonym: "maxillary secondary premolar tooth" EXACT [FMA:55716] synonym: "permanent upper premolar tooth" RELATED [FMA:55716] @@ -340035,6 +356257,7 @@ relationship: part_of UBERON:0001709 ! upper jaw region [Term] id: UBERON:0016453 name: lower secondary premolar tooth +subset: human_subset subset: pheno_slim synonym: "lower permanent premolar tooth" EXACT [FMA:55717] synonym: "mandibular secondary premolar tooth" EXACT [FMA:55717] @@ -340050,6 +356273,8 @@ relationship: part_of UBERON:0001710 ! lower jaw region [Term] id: UBERON:0016454 name: upper central secondary incisor tooth +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "I1" RELATED OMO:0003000 [] synonym: "maxillary central permanent incisor tooth" EXACT [] @@ -340071,6 +356296,8 @@ relationship: part_of UBERON:0007774 ! secondary dentition [Term] id: UBERON:0016455 name: upper lateral secondary incisor tooth +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "I2" RELATED OMO:0003000 [] synonym: "maxillary lateral secondary incisor tooth" EXACT [FMA:55724] @@ -340092,6 +356319,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/557" xsd: id: UBERON:0016458 name: esophageal hiatus def: "A hole in the diaphragm through which the esophagus passes." [HP:0002036] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "esophageal hiatus of diaphragm" EXACT [FMA:58289] synonym: "oesophageal aperture" EXACT [FMA:58289] @@ -340108,6 +356337,8 @@ relationship: part_of UBERON:0001103 ! diaphragm id: UBERON:0016459 name: posterior pole of lens def: "The central point on the posterior surface of the lens." [http://www.medilexicon.com/medicaldictionary.php?t=70707] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "polus posterior (lens)" EXACT [FMA:58898] synonym: "polus posterior lentis" EXACT OMO:0003011 [] @@ -340121,6 +356352,8 @@ disjoint_from: UBERON:0019208 {source="lexical"} ! anterior pole of lens id: UBERON:0016462 name: periorbital skin def: "A zone of skin in the periorbital region of the face." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "skin of orbital part of face" EXACT [FMA:59350] xref: EMAPA:37937 {source="MA:th"} @@ -340134,6 +356367,8 @@ relationship: part_of UBERON:0004090 ! periorbital region id: UBERON:0016464 name: dorsum of nose def: "The midline prominence of the nose, extending from the nasal root to the tip." [HP:0011119] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "nasal dorsum" EXACT [FMA:59517] synonym: "nasal ridge" RELATED [HP:0011119] @@ -340147,6 +356382,8 @@ relationship: part_of UBERON:0007827 {source="FMA"} ! external nose id: UBERON:0016466 name: antihelix def: "On the pinna, a curved prominence of cartilage, parallel with and in front of the helix, is called the antihelix, also known as the anthelix; this divides above into two crura, the crura antihelicis, between which is a triangular depression, the fossa triangularis." [Wikipedia:Antihelix] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anthelix" RELATED [Wikipedia:Antihelix] synonym: "antihelical part of pinna" EXACT [FMA:60995] @@ -340166,6 +356403,8 @@ relationship: part_of UBERON:0001757 {source="FMA"} ! pinna id: UBERON:0016467 name: antitragus def: "The antitragus is a feature of human ear anatomy. It is a small tubercle that points anteriorly. It is separated from the tragus by the intertragic notch." [Wikipedia:Antitragus] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "antitragal part of pinna" EXACT [FMA:61001] xref: FMA:61001 @@ -340182,6 +356421,8 @@ relationship: part_of UBERON:0001757 {source="FMA"} ! pinna id: UBERON:0016475 name: skin of forehead def: "A zone of skin that is part of a forehead." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "forehead skin" EXACT [FMA:63883] xref: EMAPA:37952 {source="MA:th"} @@ -340195,6 +356436,8 @@ relationship: part_of UBERON:0008200 ! forehead id: UBERON:0016476 name: primary incisor tooth def: "An incisor tooth that is part of a primary dentition." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "deciduous incisor tooth" EXACT [FMA:84200] synonym: "temporary incisor tooth" EXACT [FMA:84200] @@ -340211,6 +356454,8 @@ id: UBERON:0016477 name: zygomatic process of maxilla def: "The zygomatic process of the maxilla (malar process) is a rough triangular eminence, situated at the angle of separation of the anterior, zygomatic, and orbital surfaces. In front it forms part of the anterior surface. Behind it is concave, and forms part of the infratemporal fossa. Above it is rough and serrated for articulation with the zygomatic bone. Below it presents the prominent arched border which marks the division between the anterior and infratemporal surfaces." [Wikipedia:Zygomatic_process_of_maxilla] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "malar process" BROAD [Wikipedia:Zygomatic_process_of_maxilla] synonym: "malar process of maxilla" EXACT [Wikipedia:Zygomatic_process_of_maxilla] synonym: "processus zygomaticus (maxilla)" EXACT [FMA:52895] @@ -340228,6 +356473,8 @@ id: UBERON:0016478 name: liver stroma def: "A stroma that is part of a liver." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "hepatic stroma" EXACT [FMA:17553] synonym: "stroma of liver" EXACT [FMA:17553] xref: FMA:17553 @@ -340242,6 +356489,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0016479 name: capsule of liver def: "A collagenous capsule covering the external surface of the liver." [Wikipedia:Fibrous_capsule_of_Glisson] +subset: human_subset +subset: mouse_subset synonym: "capsula fibrosa perivascularis" EXACT OMO:0003011 [Wikipedia:Fibrous_capsule_of_Glisson] synonym: "fibrous capsule of Glisson" RELATED [Wikipedia:Fibrous_capsule_of_Glisson] synonym: "fibrous capsule of liver" EXACT [FMA:15813] @@ -340267,6 +356516,8 @@ property_value: structure_notes "It consists of type III collagen and extends to [Term] id: UBERON:0016480 name: interlobular stroma of liver +subset: human_subset +subset: mouse_subset subset: pheno_slim xref: FMA:17525 is_a: UBERON:0016478 {source="FMA"} ! liver stroma @@ -340276,6 +356527,8 @@ relationship: adjacent_to UBERON:0004647 ! liver lobule id: UBERON:0016481 name: bronchial lymph node def: "A lymph node that is part of a bronchus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: MA:0003078 xref: NCIT:C32232 xref: UMLS:C1305372 @@ -340289,6 +356542,8 @@ relationship: part_of UBERON:0002185 ! bronchus id: UBERON:0016482 name: dental plaque def: "A soft, thin film of food debris, mucin, and dead epithelial cells deposited on the teeth, providing the medium for the growth of various bacteria. The main inorganic components are calcium and phosphorus, with small amounts of magnesium, potassium, and sodium; the organic matrix consists of polysaccharides, proteins, carbohydrates, lipids, and other components. Plaque plays an important etiologic role in the development of dental caries and periodontal and gingival diseases and provides the base for the development of materia alba; calcified plaque forms dental calculus." [BTO:0000338, Dorlands_Medical_Dictionary:MerckSource] +subset: human_subset +subset: mouse_subset synonym: "bacterial plaque" RELATED [BTO:0000338] synonym: "plaque" RELATED [http://orcid.org/0000-0002-6601-2165] xref: BTO:0000338 @@ -340301,12 +356556,16 @@ relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0016484 name: subgingival dental plaque +subset: human_subset +subset: mouse_subset synonym: "subgingival plaque" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0016482 ! dental plaque [Term] id: UBERON:0016485 name: supragingival dental plaque +subset: human_subset +subset: mouse_subset synonym: "supragingival plaque" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0016482 ! dental plaque @@ -340314,6 +356573,8 @@ is_a: UBERON:0016482 ! dental plaque id: UBERON:0016486 name: posterior fornix of vagina def: "The vaginal fornix that is behind the cervix. It is close to the recto-uterine pouch." [Wikipedia:Vaginal_fornix] +subset: human_subset +subset: mouse_subset synonym: "pars posterior fornicis vaginae" EXACT [FMA:TA] synonym: "posterior fornix" BROAD [] synonym: "posterior part of fornix of vagina" EXACT [FMA:19987] @@ -340326,6 +356587,8 @@ disjoint_from: UBERON:0016487 {source="lexical"} ! anterior fornix of vagina id: UBERON:0016487 name: anterior fornix of vagina def: "The vaginal fornix that is front of the cervix. It is close to the vesico-uterine pouch." [Wikipedia:Vaginal_fornix] +subset: human_subset +subset: mouse_subset synonym: "anterior fornix" BROAD [] synonym: "anterior part of fornix of vagina" EXACT [FMA:19986] synonym: "pars anterior fornicis vaginae" EXACT OMO:0003011 [FMA:TA] @@ -340337,6 +356600,8 @@ is_a: UBERON:0000051 {source="FMA"} ! fornix of vagina id: UBERON:0016490 name: auditory system def: "Is the sensory system for the sense of hearing." [NLXANAT:090817] +subset: human_subset +subset: mouse_subset xref: EMAPA:36002 xref: FMA:7192 xref: MA:0002443 @@ -340356,6 +356621,8 @@ property_value: external_ontology_notes "Auditory system is general anatomical t id: UBERON:0016491 name: vertebral centrum element def: "Skeletal element that functionally replaces the notochord[VSAP,modified]." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/207, https://github.com/obophenotype/uberon/issues/80, VSAO:0000183, VSAO:curator] +subset: human_subset +subset: mouse_subset synonym: "centrum" BROAD [VSAO:0000183] synonym: "centrum of vertebra" EXACT [] xref: VSAO:0000183 @@ -340371,6 +356638,8 @@ id: UBERON:0016492 name: foramen spinosum of sphenoid bone def: "A foramen in the sphenoid bone through which the middle meningeal artery, middle meningeal vein, and the meningeal branch of the mandibular nerve pass." [Wikipedia:Foramen_spinosum] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "foramen spinosum" EXACT OMO:0003011 [FMA:53156, Wikipedia:Foramen_spinosum] xref: FMA:53156 xref: SCTID:369440000 @@ -340390,6 +356659,8 @@ id: UBERON:0016493 name: palmaris longus muscle def: "The palmaris longus is seen as a small tendon between the flexor carpi radialis and the flexor carpi ulnaris, although it is not always present. The muscle is absent in about 14 percent of the population, however this varies greatly with ethnicity. Absence of palmaris does not have any known effect on grip strength. Palmaris longus can be palpated by touching the pads of the fifth and first fingers and flexing the wrist. The tendon, if present, will be very visible." [Wikipedia:Palmaris_longus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "musculus palmaris longus" EXACT OMO:0003011 [Wikipedia:Palmaris_longus_muscle] synonym: "palmaris" BROAD [] synonym: "palmaris longus" EXACT [FMA:38462] @@ -340411,6 +356682,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0016496 name: tendon of palmaris longus +subset: human_subset +subset: mouse_subset synonym: "palmaris longus tendon" EXACT [FMA:38594] synonym: "tendon of palmaris longus muscle" RELATED [FMA:38594] xref: FMA:38594 @@ -340423,6 +356696,8 @@ relationship: part_of UBERON:0004452 {source="FMA"} ! carpal region id: UBERON:0016497 name: epicondyle of humerus def: "An epicondyle that is part of a humerus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:321693 xref: NCIT:C114187 xref: SCTID:272693008 @@ -340437,6 +356712,8 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:0016498 name: intestinal-cloacal junction def: "The juncture where the intestine empties into the cloaca." [ZFA:0005782] +subset: human_subset +subset: mouse_subset synonym: "gut opening" RELATED [ZFA:0005782] synonym: "intestinal opening" EXACT [ZFA:0005782] xref: ZFA:0005782 @@ -340449,6 +356726,8 @@ relationship: located_in UBERON:0012463 {source="ZFA-modified"} ! cloacal lumen id: UBERON:0016499 name: esophageal-pneumatic duct sphincter def: "Sphincter at the junction of the esophagus and pneumatic duct." [ZFA:0000415, ZFA:CVS, ZFA:YMB] +subset: human_subset +subset: mouse_subset synonym: "oesophagial sphincter" RELATED [ZFA:0000415] xref: TAO:0000415 xref: ZFA:0000415 @@ -340466,6 +356745,8 @@ id: UBERON:0016500 name: muscularis mucosa of fundus of urinary bladder def: "A muscularis mucosa that is part of a fundus of urinary bladder." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:28625 is_a: UBERON:0006912 ! urinary bladder muscularis mucosa intersection_of: UBERON:0006676 ! muscularis mucosa @@ -340478,6 +356759,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0016501 name: muscularis mucosae of fundus of stomach def: "A muscularis mucosa that is part of a fundus of stomach." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:27165 xref: FMA:17278 is_a: UBERON:0001203 ! muscularis mucosae of stomach @@ -340491,6 +356774,8 @@ relationship: part_of UBERON:0004994 {source="FMA"} ! mucosa of fundus of stomac id: UBERON:0016502 name: stomach fundus lumen def: "An anatomical space that is enclosed by a fundus of stomach." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cavity of fundus of stomach" EXACT [FMA:17077] synonym: "lumen of fundus of stomach" EXACT [FMA:17077] synonym: "lumen of stomach fundus" EXACT [] @@ -340506,6 +356791,8 @@ relationship: part_of UBERON:0001160 ! fundus of stomach id: UBERON:0016504 name: umbilical ring def: "A dense fibrous ring surrounding the umbilicus at birth. At about the sixth week of embryological development, the midgut herniates through the umbilical ring; four weeks later it returns to the abdominal cavity and rotates around the superior mesenteric artery." [Wikipedia:Umbilical_ring] +subset: human_subset +subset: mouse_subset xref: EMAPA:31868 xref: FMA:19930 xref: SCTID:368065003 @@ -340518,6 +356805,8 @@ relationship: surrounds UBERON:0007118 ! umbilicus id: UBERON:0016505 name: Mullerian tubercle def: "An elevation on the wall of the embryonic urogenital sinus where the Müllerian ducts enter." [http://www.merriam-webster.com/medical/m%C3%BCllerian%20tubercle] +subset: human_subset +subset: mouse_subset synonym: "Muellerian tubercle" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "mullerian tubercle" EXACT [FMA:72175] synonym: "Müllerian tubercle" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -340533,6 +356822,8 @@ relationship: part_of UBERON:0000474 ! female reproductive system id: UBERON:0016508 name: pelvic ganglion subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "inferior hypogastric ganglion" EXACT [FMA:80131] synonym: "pelvic ganglia" RELATED OMO:0003004 [] xref: EMAPA:31527 @@ -340545,6 +356836,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0016509 name: cavity of right ventricle def: "Luminal space of the right ventricle of the heart." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "right ventricle lumen" EXACT [EMAPA:26047] synonym: "right ventricular cavity" EXACT [FMA:FMA] xref: EMAPA:26047 @@ -340559,6 +356852,8 @@ relationship: part_of UBERON:0002080 ! heart right ventricle id: UBERON:0016510 name: epithelium of male urethra def: "An epithelium that is part of a male urethra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "male urethral epithelium" EXACT [FMA:FMA] synonym: "urethral epithelium of male" EXACT [EMAPA:30467] xref: EMAPA:30467 @@ -340572,6 +356867,8 @@ relationship: part_of UBERON:0001333 ! male urethra id: UBERON:0016511 name: lamina propria of fundus of stomach def: "A lamina propria that is part of a mucosa of fundus of stomach." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lamina propria mucosae of fundus of stomach" EXACT [FMA:FMA] xref: EMAPA:27163 xref: FMA:17500 @@ -340584,6 +356881,8 @@ relationship: part_of UBERON:0004994 ! mucosa of fundus of stomach id: UBERON:0016512 name: lumen of duodenum def: "An anatomical space that is part of a duodenum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "doudenal lumen" EXACT [FMA:FMA] synonym: "duodenal lumen" EXACT [FMA:FMA] xref: EMAPA:19080 @@ -340597,6 +356896,8 @@ relationship: part_of UBERON:0002114 ! duodenum id: UBERON:0016513 name: cavity of left atrium def: "Luminal space of the left atrium of the heart." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "left atrial cavity" EXACT [FMA:FMA] synonym: "left atrium lumen" EXACT [EMAPA:26011] xref: EMAPA:26011 @@ -340611,6 +356912,8 @@ relationship: part_of UBERON:0002079 ! left cardiac atrium id: UBERON:0016514 name: cavity of left ventricle def: "Luminal space of the left ventricle of the heart." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "left ventricular cavity" EXACT [FMA:FMA] xref: EMAPA:26038 xref: FMA:9466 @@ -340624,6 +356927,8 @@ relationship: part_of UBERON:0002084 ! heart left ventricle id: UBERON:0016515 name: muscular layer of prostatic urethra def: "A muscular coat that is part of a prostatic urethra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscle layer of prostatic part of urethra" EXACT [FMA:FMA] synonym: "muscle layer of prostatic urethra" EXACT [EMAPA:30956, FMA:FMA] synonym: "muscular coat of prostatic urethra" EXACT [FMA:FMA] @@ -340639,6 +356944,8 @@ relationship: part_of UBERON:0001335 ! prostatic urethra id: UBERON:0016516 name: lamina propria of prostatic urethra def: "A lamina propria that is part of a prostatic urethra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lamina propria of prostatic part of urethra" EXACT [FMA:FMA] synonym: "lamina propria of prostatic urethra" EXACT [EMAPA:32303] xref: EMAPA:32303 @@ -340652,6 +356959,8 @@ relationship: part_of UBERON:0001335 ! prostatic urethra id: UBERON:0016517 name: lumen of jejunum def: "An anatomical space that is part of a jejunum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "jejunal lumen" EXACT [FMA:FMA] synonym: "jejunum lumen" EXACT [FMA:FMA] xref: EMAPA:18729 @@ -340666,6 +356975,8 @@ id: UBERON:0016519 name: muscularis mucosae of jejunum def: "A muscularis mucosa that is part of a jejunum." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:27121 xref: FMA:15063 is_a: UBERON:0001210 ! muscularis mucosae of small intestine @@ -340679,6 +356990,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0016520 name: epithelium of female urethra def: "An epithelium that is part of a female urethra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "female urethral epithelium" EXACT [FMA:FMA] synonym: "urethral epithelium of female" EXACT [EMAPA:30470] xref: EMAPA:30470 @@ -340692,6 +357005,8 @@ relationship: part_of UBERON:0001334 ! female urethra id: UBERON:0016522 name: cavity of right atrium def: "Luminal space of the right atrium of the heart." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "right atrial cavity" EXACT [FMA:FMA] xref: EMAPA:26020 xref: FMA:11359 @@ -340705,6 +357020,8 @@ relationship: part_of UBERON:0002078 ! right cardiac atrium id: UBERON:0016524 name: muscle layer of spongiose part of urethra def: "A muscular coat that is part of a spongiose part of urethra." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscle layer of penile urethra" EXACT [EMAPA:30950, FMA:FMA] synonym: "muscle layer of spongy urethra" EXACT [FMA:FMA] synonym: "muscular coat of spongy urethra" EXACT [FMA:FMA] @@ -340725,6 +357042,8 @@ name: frontal lobe def: "Frontal lobe is the anterior-most of five lobes of the cerebral hemisphere. It is bounded by the central sulcus on its posterior border and by the longitudinal cerebral fissure on its medial border." [FMA:61824] subset: efo_slim subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "frontal cortex" NARROW [FMA:61824] synonym: "frontal region" BROAD [FMA:61824] synonym: "lobi frontales" EXACT OMO:0003011 [NeuroNames:56] @@ -340759,6 +357078,8 @@ name: lobe of cerebral hemisphere alt_id: UBERON:0000322 def: "Subdivision of telencephalon which is one of a number of subdivisions of each hemisphere separated by both real landmarks (sulci and fissures) and arbitrary boundaries[FMA,modified]." [FMA:61823] comment: We use the term lobe broadly as a rough regional area, encompassing homologous regions in smooth-brained mammals. We subdivide the lobes into white matter and neocortical parts. +subset: human_subset +subset: mouse_subset synonym: "cerebral cortical segment" RELATED [FMA:68603] synonym: "cerebral hemisphere lobe" EXACT [FMA:61823] synonym: "cerebral lobe" EXACT [BTO:0000445] @@ -340781,6 +357102,8 @@ relationship: part_of UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0016527 name: white matter of cerebral lobe +subset: human_subset +subset: mouse_subset xref: FMA:256176 is_a: UBERON:0002437 ! cerebral hemisphere white matter intersection_of: UBERON:0002437 ! cerebral hemisphere white matter @@ -340792,6 +357115,8 @@ relationship: part_of UBERON:0016526 ! lobe of cerebral hemisphere id: UBERON:0016528 name: white matter of frontal lobe def: "A white matter of cerebral lobe that is part of a frontal lobe." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "frontal lobe white matter" EXACT [] xref: FMA:256178 xref: SCTID:362331002 @@ -340804,6 +357129,8 @@ relationship: part_of UBERON:0016525 ! frontal lobe id: UBERON:0016529 name: cortex of cerebral lobe def: "Grey matter neocortex region of a lobe of the cerebral hemisphere." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "cortex of cerebral hemisphere lobe" EXACT [FMA:242197] synonym: "cortex of lobe of cerebral hemisphere" EXACT [FMA:242197] synonym: "gray matter of lobe of cerebral hemisphere" RELATED [FMA:242197] @@ -340820,6 +357147,8 @@ relationship: part_of UBERON:0016526 ! lobe of cerebral hemisphere id: UBERON:0016530 name: parietal cortex def: "Gray matter of the parietal region of the neocortex, located in the parietal lobe of gyrencephalic animals. It is continuous anteriorly with the frontal cortex, posteriorly with the occipital cortex and medially with the insular cortex and with the temporal cortex on the posterior/inferior border." [NLX:79282] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "cortex of parietal lobe" EXACT [FMA:242203] synonym: "gray matter of parietal lobe" RELATED [FMA:242203] @@ -340843,6 +357172,8 @@ relationship: part_of UBERON:0001872 ! parietal lobe id: UBERON:0016531 name: white matter of parietal lobe def: "A white matter of cerebral lobe that is part of a parietal lobe." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:256184 xref: SCTID:369200008 is_a: UBERON:0016527 ! white matter of cerebral lobe @@ -340854,6 +357185,8 @@ relationship: part_of UBERON:0001872 ! parietal lobe id: UBERON:0016534 name: white matter of temporal lobe def: "A white matter of cerebral lobe that is part of a temporal lobe." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:256186 xref: SCTID:362344007 is_a: UBERON:0016527 ! white matter of cerebral lobe @@ -340865,6 +357198,8 @@ relationship: part_of UBERON:0001871 ! temporal lobe id: UBERON:0016535 name: white matter of occipital lobe def: "A white matter of cerebral lobe that is part of a occipital lobe." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:256188 xref: neuronames:832 xref: SCTID:362339000 @@ -340877,6 +357212,8 @@ relationship: part_of UBERON:0002021 ! occipital lobe id: UBERON:0016536 name: white matter of limbic lobe def: "A white matter of cerebral lobe that is part of a limbic lobe." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: FMA:261091 is_a: UBERON:0016527 ! white matter of cerebral lobe intersection_of: UBERON:0016527 ! white matter of cerebral lobe @@ -340887,6 +357224,8 @@ relationship: part_of UBERON:0002600 ! limbic lobe id: UBERON:0016538 name: temporal cortex def: "Gray matter of the temporal region of the neocortex, located in the temporal lobe in gyrencephalic animals." [NLX:94939] +subset: human_subset +subset: mouse_subset synonym: "cortex of temporal lobe" EXACT [FMA:242201] synonym: "gray matter of temporal lobe" RELATED [FMA:242201] synonym: "temporal lobe cortex" EXACT [FMA:242201] @@ -340907,6 +357246,8 @@ relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0016540 name: occipital cortex +subset: human_subset +subset: mouse_subset synonym: "cortex of occipital lobe" EXACT [FMA:242205] synonym: "gray matter of occipital lobe" RELATED [FMA:242205] synonym: "occipital lobe cortex" EXACT [FMA:242205] @@ -340925,6 +357266,8 @@ relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0016542 name: limbic cortex +subset: human_subset +subset: mouse_subset synonym: "cortex of limbic lobe" EXACT [FMA:242234] synonym: "gray matter of limbic lobe" RELATED [FMA:242234] synonym: "limbic lobe cortex" EXACT [FMA:242234] @@ -340939,6 +357282,8 @@ id: UBERON:0016545 name: pharyngeal ectoderm alt_id: UBERON:2001379 def: "The external part of the developing pharynx that is made of ectoderm. During vertebrate development, pockets form in pharyngeal ectoderm between the pharyngeal arches." [http://orcid.org/0000-0002-6601-2165, PMID:23020903] +subset: human_subset +subset: mouse_subset xref: TAO:0001379 xref: ZFA:0001379 is_a: UBERON:0000490 ! unilaminar epithelium @@ -340953,6 +357298,8 @@ relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0016547 name: lower foregut region endoderm +subset: human_subset +subset: mouse_subset xref: EHDAA2:0000566 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0003929 ! digestive tract epithelium @@ -340964,6 +357311,8 @@ relationship: part_of UBERON:0003929 {source="EHDAA2"} ! digestive tract epithel id: UBERON:0016548 name: central nervous system gray matter layer def: "A layer of of the central nervous system that is part of gray matter." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "CNS gray matter layer" EXACT [] synonym: "CNS grey matter layer" EXACT [] synonym: "gray matter layer of neuraxis" EXACT [FMA:83142] @@ -340979,6 +357328,8 @@ relationship: composed_primarily_of UBERON:0002020 ! gray matter id: UBERON:0016549 name: central nervous system white matter layer def: "A layer of of the central nervous system that is composed of white matter." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "CNS white matter layer" EXACT [] synonym: "white matter layer" BROAD [] synonym: "white matter layer of neuraxis" EXACT [FMA:83898] @@ -340991,12 +357342,16 @@ relationship: composed_primarily_of UBERON:0002316 ! white matter [Term] id: UBERON:0016550 name: spinal cord column +subset: human_subset +subset: mouse_subset is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0016551 name: subdivision of spinal cord ventral column +subset: human_subset +subset: mouse_subset subset: non_informative is_a: UBERON:0016550 ! spinal cord column relationship: part_of UBERON:0005375 ! spinal cord ventral column @@ -341005,6 +357360,8 @@ relationship: part_of UBERON:0005375 ! spinal cord ventral column id: UBERON:0016552 name: phlegm def: "Mucus produced in the respiratory tract." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: NCIT:C93171 xref: UMLS:C0225378 is_a: UBERON:0000912 ! mucus @@ -341016,6 +357373,8 @@ relationship: produced_by UBERON:0000065 ! respiratory tract id: UBERON:0016553 name: respiratory system mucus def: "Any mucus produced by a mucosae of the respiratory system. This includes the mucus produced in the nasal cavity (nasal mucus) and mucus produced in the respiratory tract (phlegm)." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Nasal_mucus#Respiratory_system] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000912 ! mucus intersection_of: UBERON:0000912 ! mucus intersection_of: produced_by UBERON:0004785 ! respiratory system mucosa @@ -341026,6 +357385,8 @@ id: UBERON:0016554 name: white matter of midbrain def: "A white matter that is part of the midbrain." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "mesencephalic white matter" EXACT [HBA:MESWM] xref: DHBA:10650 xref: FMA:83936 @@ -341040,6 +357401,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0016555 name: stria of telencephalon def: "A stria of neuraxis that is part of a telencephalon." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "telencephalon stria" EXACT [FMA:67950] xref: FMA:67950 is_a: UBERON:0011299 ! white matter of telencephalon @@ -341052,6 +357415,8 @@ relationship: part_of UBERON:0001893 ! telencephalon id: UBERON:0016559 name: superficial cerebral vein def: "The superficial cerebral veins are a group of veins in the head. This group includes the superior cerebral veins." [Wikipedia:Superficial_cerebral_veins] +subset: human_subset +subset: mouse_subset synonym: "cortical cerebral vein" EXACT [FMA:50982] xref: FMA:50982 xref: Wikipedia:Superficial_cerebral_veins @@ -341063,6 +357428,8 @@ relationship: part_of UBERON:0035549 ! vasculature of integument id: UBERON:0016564 name: deep cerebral vein def: "The deep cerebral veins are a group of veins in the head. This group includes the superior thalamostriate vein." [Wikipedia:Deep_cerebral_veins] +subset: human_subset +subset: mouse_subset xref: FMA:50989 xref: Wikipedia:Deep_cerebral_veins is_a: UBERON:0001663 {source="FMA"} ! cerebral vein @@ -341071,6 +357438,8 @@ is_a: UBERON:0001663 {source="FMA"} ! cerebral vein id: UBERON:0016565 name: cerebral blood vessel def: "A blood vessel that is part of a cerebellum." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003499 ! brain blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002037 ! cerebellum @@ -341081,6 +357450,8 @@ relationship: part_of UBERON:0008998 ! vasculature of brain id: UBERON:0016566 name: pit def: "An roughly circular indentation in a surface." [AEO:0000204, AEO:JB] +subset: human_subset +subset: mouse_subset subset: upper_level xref: AEO:0000204 is_a: UBERON:0036215 ! anatomical surface region @@ -341090,6 +357461,8 @@ id: UBERON:0016567 name: statoconial membrane def: "An acellular membrane in the vestibular labyrinth that is composed of the otoconial layer, gelatinous layer, and a subcupular meshwork." [http://orcid.org/0000-0002-6601-2165, PMID:2482728] comment: See https://sourceforge.net/p/obo/zebrafish-anatomy-zfa-term-requests/132/ +subset: human_subset +subset: mouse_subset synonym: "otoconial-statoconial membrane" EXACT [ISBN:1565939948] synonym: "otolith membrane" NARROW [] xref: FMA:75570 @@ -341102,6 +357475,8 @@ relationship: part_of UBERON:0002518 ! otolith organ [Term] id: UBERON:0016568 name: gelatinous layer of statoconial membrane +subset: human_subset +subset: mouse_subset xref: FMA:75588 is_a: UBERON:0000476 {source="FMA"} ! acellular anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure @@ -341111,6 +357486,8 @@ relationship: part_of UBERON:0016567 {source="FMA"} ! statoconial membrane id: UBERON:0016569 name: subcupular meshwork of statoconial membrane def: "An acellular membrane in the inner ear that is part of the statoconial membrane and consists of long branching filaments cross-bridged to one another. The filaments are continuous with those of the otolithic membrane on one side and with the surface of the epithelium on the other." [ISBN:1565939948] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000476 ! acellular anatomical structure @@ -341124,6 +357501,8 @@ relationship: part_of UBERON:0016567 ! statoconial membrane [Term] id: UBERON:0016570 name: lamina of gray matter of spinal cord +subset: human_subset +subset: mouse_subset synonym: "rexed lamina" EXACT [FMA:68861] xref: FMA:68861 xref: http://neurolex.org/wiki/Category\:Rexed_spinal_cord_parcellation_scheme_region @@ -341143,6 +357522,8 @@ replaced_by: UBERON:0002181 [Term] id: UBERON:0016574 name: lamina III of gray matter of spinal cord +subset: human_subset +subset: mouse_subset synonym: "lamina 3" RELATED [NeuroNames:1695] synonym: "lamina III" RELATED [NeuroNames:1695] synonym: "lamina spinale III" EXACT OMO:0003011 [FMA:68864, FMA:TA] @@ -341158,6 +357539,8 @@ relationship: part_of UBERON:0016610 ! nucleus proprius of spinal cord [Term] id: UBERON:0016575 name: lamina IV of gray matter of spinal cord +subset: human_subset +subset: mouse_subset synonym: "lamina 4" RELATED [NeuroNames:1696] synonym: "lamina IV" RELATED [NeuroNames:1696] synonym: "lamina spinale IV" EXACT OMO:0003011 [FMA:68865, FMA:TA] @@ -341174,6 +357557,8 @@ relationship: part_of UBERON:0016610 ! nucleus proprius of spinal cord id: UBERON:0016576 name: lamina V of gray matter of spinal cord def: "Spinal lamina V is a lamina of the spinal cord. It is also known as the neck of the posterior horn." [Wikipedia:Spinal_lamina_V] +subset: human_subset +subset: mouse_subset synonym: "lamina 5" RELATED [NeuroNames:1698] synonym: "lamina spinalis V" RELATED OMO:0003011 [NeuroNames:1698] synonym: "lamina V" RELATED [NeuroNames:1698] @@ -341191,6 +357576,8 @@ relationship: part_of UBERON:0016610 ! nucleus proprius of spinal cord id: UBERON:0016577 name: lamina VI of gray matter of spinal cord def: "Spinal lamina VI is a lamina of the spinal cord. It is also known as the base of the posterior horn." [Wikipedia:Spinal_lamina_VI] +subset: human_subset +subset: mouse_subset synonym: "basal nucleus of the dorsal horn" RELATED [NeuroNames:2007] synonym: "base of dorsal horn of spinal cord" RELATED [NeuroNames:2007] synonym: "base of posterior horn of spinal cord" RELATED [NeuroNames:2007] @@ -341221,6 +357608,8 @@ property_value: editor_note "consider splitting" xsd:string [Term] id: UBERON:0016578 name: lamina VII of gray matter of spinal cord +subset: human_subset +subset: mouse_subset synonym: "lamina 7" RELATED OMO:0003011 [NeuroNames:1700] synonym: "lamina spinalis VII" RELATED OMO:0003011 [NeuroNames:1700] synonym: "lamina VII" RELATED OMO:0003011 [NeuroNames:1700] @@ -341235,6 +357624,8 @@ relationship: part_of UBERON:0002257 {source="https://github.com/obophenotype/ub [Term] id: UBERON:0016579 name: lamina VIII of gray matter of spinal cord +subset: human_subset +subset: mouse_subset synonym: "lamina 8" RELATED OMO:0003011 [NeuroNames:1701] synonym: "lamina spinalis" RELATED OMO:0003011 [NeuroNames:1701] synonym: "lamina VIII" RELATED [NeuroNames:1701] @@ -341250,6 +357641,8 @@ relationship: part_of UBERON:0034771 {source="https://github.com/obophenotype/ub [Term] id: UBERON:0016580 name: lamina IX of gray matter of spinal cord +subset: human_subset +subset: mouse_subset synonym: "rexed lamina IX" EXACT [FMA:68870] synonym: "spinal lamina IX" EXACT [FMA:68870] xref: FMA:68870 @@ -341274,6 +357667,8 @@ consider: FMA:68873 id: UBERON:0016610 name: nucleus proprius of spinal cord def: "The Nucleus proprius is a layer of the spinal cord adjacent to the substantia gelatinosa. Nucleus proprius constitutes the bulk of the dorsal horn and receives inputs from the dorsal root ganglions that carry sensory information, such as light touch, as well as pain and temperature information. Cells in this nucleus project to deeper laminae of the spinal cord, to the posterior column nuclei, and to other supraspinal relay centers including the midbrain, thalamus, and hypothalamus. Rexed laminae III, IV, and V make up the nucleus propius Nucleus proprius (NP), along with nucleus dorsalis (ND) are involved in sensing fine touch and proprioception." [Wikipedia:Nucleus_proprius_of_spinal_cord] +subset: human_subset +subset: mouse_subset synonym: "nucleus proprius" RELATED [NeuroNames:1633, Wikipedia:Nucleus_proprius_of_spinal_cord] synonym: "nucleus proprius columnae posterioris" RELATED OMO:0003011 [NeuroNames:1633] synonym: "nucleus proprius cornu dorsalis" RELATED OMO:0003011 [NeuroNames:1633] @@ -341292,6 +357687,8 @@ relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord id: UBERON:0016611 name: auditory hillocks, pharyngeal arch 1 derived def: "A collection of protruberances derived from pharyngeal arch 1 that develop into the tragus, crus of the helix, and helix." [http://php.med.unsw.edu.au/embryology/index.php?title=Hearing_-_Outer_Ear_Development#Pinna-_Auricle] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: develops_from UBERON:0004362 ! pharyngeal arch 1 @@ -341303,6 +357700,8 @@ relationship: part_of UBERON:0006208 ! auditory hillocks id: UBERON:0016612 name: auditory hillocks, pharyngeal arch 2 derived def: "A collection of protruberances derived from pharyngeal arch 2 that develop into the concha, antihelix and antitragus." [http://php.med.unsw.edu.au/embryology/index.php?title=Hearing_-_Outer_Ear_Development#Pinna-_Auricle] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: develops_from UBERON:0003066 ! pharyngeal arch 2 @@ -341385,6 +357784,8 @@ relationship: part_of UBERON:0016619 ! Y-shaped fibrocartilage skeleton of ventr id: UBERON:0016630 name: neurovascular bundle def: "A body structure consisting of nerves traveling together with arteries, veins, and/or lymphatics." [ncithesaurus:Neurovascular_Bundle] +subset: human_subset +subset: mouse_subset xref: FMA:32419 xref: NCIT:C74603 xref: UMLS:C0824497 @@ -341396,6 +357797,8 @@ relationship: has_part UBERON:0002049 ! vasculature id: UBERON:0016631 name: actinopterygian frontal-parietal joint def: "Fibrous joint connecting the actinopterygian frontal bone to the actinopterygian parietal bone." [ZFA:0005608, ZFIN:ZDB-PUB-060323-12] +subset: human_subset +subset: mouse_subset synonym: "coronal suture" RELATED [ZFA:0005608] synonym: "frontal-parietal joint" RELATED SENSU [ZFA:0005608] xref: TAO:0005255 @@ -341412,6 +357815,8 @@ relationship: connects UBERON:0004866 ! actinopterygian frontal bone id: UBERON:0016632 name: isthmus of fallopian tube subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "isthmus of oviduct" RELATED [FMA:18306] synonym: "isthmus of uterine tube" RELATED [FMA:18306] synonym: "isthmus tubae uterinae" EXACT OMO:0003011 [FMA:18306, FMA:TA] @@ -341426,6 +357831,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0016633 name: parvocellular reticular nucleus def: "The parvocellular reticular nucleus is part of the brain located dorsolateral to the nucleus reticularis pontis caudalis. The dorsal portion of the reticular nucleus has been shown to innervate the mesencephalic trigeminal nucleus and its surrounding area. Also, it projects to the facial nucleus, hypoglossal nucleus and parabrachial nucleus along with parts of the caudal parvocellular reticular formation. This nucleus is also involved in expiration with a part of the gigantocellular nucleus." [Wikipedia:Parvocellular_reticular_nucleus] +subset: human_subset +subset: mouse_subset synonym: "nucleus parvocellularis" RELATED OMO:0003011 [NeuroNames:728] synonym: "nucleus reticularis parvicellularis" RELATED OMO:0003011 [NeuroNames:728] synonym: "nucleus reticularis parvocellaris" RELATED [Wikipedia:Parvocellular_reticular_nucleus] @@ -341450,6 +357857,8 @@ relationship: part_of UBERON:0009775 {source="FMA"} ! lateral medullary reticula id: UBERON:0016634 name: premotor cortex def: "The premotor cortex is an area of motor cortex lying within the frontal lobe of the brain. It extends 3 mm anterior to the primary motor cortex, near the Sylvian fissure, before narrowing to approximately 1 mm near the medial longitudinal fissure, which serves as the posterior border for the prefrontal cortex. The premotor cortex is largely equivalent to Brodmann area 6. Activity within this region is critical to the sensory guidance of movement and control of proximal and trunk muscles of the body." [Wikipedia:Premotor_cortex] +subset: human_subset +subset: mouse_subset synonym: "intermediate precentral cortex" RELATED [NeuroNames:2331] synonym: "nonprimary motor cortex" RELATED [NeuroNames:2331] synonym: "premotor" RELATED [Wikipedia:Premotor_cortex] @@ -341473,6 +357882,8 @@ relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0016635 name: paragigantocellular nucleus +subset: human_subset +subset: mouse_subset xref: DHBA:12626 xref: MBA:938 is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata @@ -341481,6 +357892,8 @@ is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata id: UBERON:0016636 name: supplemental motor cortex def: "The supplementary motor area (SMA) is a part of the sensorimotor cerebral cortex (perirolandic, i.e. on each side of the Rolando or central sulcus). It was included, on purely cytoarchitectonic arguments, in area 6 of Brodmann and the Vogts. It is located on the medial face of the hemisphere, just in front of primary motor cortex. This is an element that appeared late in evolution, in monkeys, linked to the appearance of a true medial pallidum." [Wikipedia:Supplementary_motor_area] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "area F3" RELATED [NeuroNames:3176] synonym: "jPL (SMC)" BROAD OMO:0003000 [FMA:224858, FMA:CMA] @@ -341500,6 +357913,8 @@ relationship: part_of UBERON:0000956 ! cerebral cortex id: UBERON:0016637 name: lateral periolivary nucleus def: "Lateral component of the periolivary nucleus." [http://medical-dictionary.thefreedictionary.com/periolivary+nuclei] +subset: human_subset +subset: mouse_subset xref: DHBA:12465 xref: FMA:226217 is_a: UBERON:0002971 {source="cjm"} ! periolivary nucleus @@ -341508,6 +357923,8 @@ is_a: UBERON:0002971 {source="cjm"} ! periolivary nucleus id: UBERON:0016641 name: subparafascicular nucleus def: "The term subparafascicular nucleus refers to a cell group located ventral to the parafascicular nucleus in the thalamus. Identified by internal structure, it is present in the human ( Mai-1997 ), the macaque ( Paxinos-2009a ), the rat ( Swanson-1998 ), and the mouse ( Hof-2000 )." [NeuroNames:2253] +subset: human_subset +subset: mouse_subset synonym: "nucleus subparafascicularis thalami" RELATED OMO:0003011 [NeuroNames:2253] synonym: "subparafascicular nucleus" RELATED [NeuroNames:2253] synonym: "subparafascicular nucleus of the thalamus" RELATED [NeuroNames:2253] @@ -341524,6 +357941,8 @@ relationship: part_of UBERON:0010225 ! thalamic complex [Term] id: UBERON:0016824 name: lateral paragigantocellular nucleus +subset: human_subset +subset: mouse_subset synonym: "lateral paragigantocellular nucleus" RELATED [NeuroNames:731] synonym: "lateral paragigantocellular reticular nucleus" EXACT [FMA:72577] synonym: "nucleus paragigantocellularis lateralis" RELATED OMO:0003011 [NeuroNames:731] @@ -341541,6 +357960,8 @@ is_a: UBERON:0016635 ! paragigantocellular nucleus [Term] id: UBERON:0016825 name: dorsal paragigantocellular nucleus +subset: human_subset +subset: mouse_subset synonym: "dorsal paragigantocellular nucleus" RELATED [NeuroNames:732] synonym: "dorsal paragigantocellular reticular nucleus" EXACT [FMA:72578] synonym: "nucleus paragigantocellularis dorsalis" RELATED OMO:0003011 [NeuroNames:732] @@ -341558,6 +357979,8 @@ is_a: UBERON:0016635 ! paragigantocellular nucleus [Term] id: UBERON:0016826 name: paramedian medullary reticular complex +subset: human_subset +subset: mouse_subset synonym: "nuclei paramedianes myelencephali" RELATED OMO:0003011 [NeuroNames:734] synonym: "paramedial reticular nuclei" RELATED [NeuroNames:734] synonym: "paramedian group (medullary reticular formation)" EXACT [FMA:72580] @@ -341574,6 +357997,8 @@ relationship: part_of UBERON:0002559 {source="FMA"} ! medullary reticular format id: UBERON:0016827 name: dorsal paramedian reticular nucleus def: "Small nucleus in the brainstem of human, located adjacent and medial to the nucleus prepositus in the dorsal medulla, described in several atlases of human brain stem. In transverse sections, it is oval with its long axis aligned with the dorsal border of the brainstem. It begins at about the same A-P level as the nucleus prepositus, just rostral to the hypoglossal nucleus. It includes calretinin immunoreactive large cells with oval or polygonal cell bodies. Cells are not immunoreactive for either calbindin or parvalbumin, but a few fibers immunoreactive to each protein are found within its central region. Cells in PMD are also immunoreactive to nNOS, and immunoreactivity to a neurofilament protein shows many labeled cells and fibers. According to Baizer et al., no equivalent structure was observed in the cat, rat, mouse or monkey atlas although they did not look at the brains of the great apes." [NLX:143549] +subset: human_subset +subset: mouse_subset synonym: "dorsal paramedian nuclei of raphe" EXACT [FMA:72581] synonym: "dorsal paramedian nucleus" EXACT [FMA:72581] synonym: "dorsal paramedian reticular nucleus" RELATED [NeuroNames:735] @@ -341592,6 +358017,8 @@ relationship: part_of UBERON:0016826 ! paramedian medullary reticular complex id: UBERON:0016832 name: paratrigeminal nucleus def: "The term paratrigeminal nucleus refers to a group of cells located lateral to the spinal trigeminal tract of the medulla and medial to the spinocerebellar tracts at the level of the spinal trigeminal nucleus. The cells, identified by Nissl stain, are partially embedded in the adjacent tracts; their distribution varies by species. The paratrigeminal nucleus may represent an extension of the lateral cervical nucleus into the medulla ( Swanson-2004 ). It is found in the human ( Carpenter-1983 ), the macaque ( Paxinos-2009a ), the rat ( Swanson-2004 ) and the mouse ( Paxinos-2001 ). In the functional model of central nervous system organization it is classified as part of the subcortical somatosensory system ( Swanson-2004 )." [NeuroNames:761] +subset: human_subset +subset: mouse_subset synonym: "lateral cervical nucleus, trigeminal extension" RELATED [NeuroNames:761] synonym: "nucleus paratrigeminalis" RELATED OMO:0003011 [NeuroNames:761] synonym: "paratrigeminal nucleus" RELATED [NeuroNames:761] @@ -341607,6 +358034,8 @@ relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata id: UBERON:0016843 name: lateral nucleus of trapezoid body def: "One of two potential parts of the trapezoid nucleus. Separated by an indistinct boundary, the other is the medial trapezoid nucleus ( Crosby-1962 ). The existence of the trapezoid nucleus in the human is disputed ( Bazwinsky-2003 )." [NeuroNames:2852] +subset: human_subset +subset: mouse_subset synonym: "lateral nucleus of the trapezoid body" RELATED [NeuroNames:2852] synonym: "lateral trapezoid nucleus" RELATED [NeuroNames:2852] synonym: "LNTB" EXACT OMO:0003000 [] @@ -341623,6 +358052,8 @@ relationship: ventral_to UBERON:0002779 ! lateral superior olivary nucleus id: UBERON:0016848 name: retroambiguus nucleus def: "The term retroambiguus nucleus refers to a group of neurons in the medulla at the caudal end of the nucleus ambiguus, from which the cranial part of the accessory nerve originates ( Crosby-1962 )." [NeuroNames:2319] +subset: human_subset +subset: mouse_subset synonym: "nucleus retroambigualis" RELATED OMO:0003011 [NeuroNames:2319] synonym: "nucleus retroambiguus" EXACT OMO:0003011 [FMA:77096, FMA:TA] synonym: "retroambiguus nucleus" RELATED [NeuroNames:2319] @@ -341642,6 +358073,8 @@ replaced_by: UBERON:0002869 id: UBERON:0016850 name: nucleus of phrenic nerve def: "Neuron cell bodies located in the more medial portions of the anterior horn at cervical levels C3-C7 that innervate the diaphragm via the phrenic nerve." [http://medical-dictionary.thefreedictionary.com/nucleus+of+phrenic+nerve] +subset: human_subset +subset: mouse_subset synonym: "nucleus nervi phrenici" RELATED OMO:0003011 [NeuroNames:2004] synonym: "nucleus of phrenic nerve" RELATED [NeuroNames:2004] synonym: "nucleus of the phrenic nerve" RELATED [NeuroNames:2004] @@ -341657,6 +358090,8 @@ is_a: UBERON:0011777 {source="FMA"} ! nucleus of spinal cord id: UBERON:0016851 name: renal fascia def: "A fascial pouch derived from extraperitoneal connective tissue that contains the kidneys, the suprarenal glands, the renal vessels and perirenal fat." [http://anatomy.uams.edu/anatomyhtml/kidney.html] +subset: human_subset +subset: mouse_subset synonym: "fascia of Zuckerkandl" EXACT [FMA:18104] synonym: "fascia renalis" RELATED [Wikipedia:Renal_fascia] synonym: "Gerota capsule" RELATED [Wikipedia:Renal_fascia] @@ -341672,6 +358107,8 @@ relationship: surrounds UBERON:0002113 ! kidney id: UBERON:0016852 name: skin scent gland def: "A scent gland that is part of the skin." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "cutaneous scent gland" EXACT [] xref: SCTID:67740006 is_a: UBERON:0002419 ! skin gland @@ -341685,6 +358122,8 @@ relationship: part_of UBERON:0002097 ! skin of body id: UBERON:0016853 name: interdigital gland def: "A skin gland found in the interdigital region of some mammals." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "interdigital sinus" EXACT [PMID:20512761] xref: SCTID:441008 is_a: UBERON:0016852 ! skin scent gland @@ -341696,6 +358135,8 @@ relationship: part_of UBERON:0012140 ! digitopodium region id: UBERON:0016854 name: dorsal part of optic cup def: "The dorsal region of the optic cup that gives rise to the dorsal part of the retina." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "dorsal optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "dorsal region of optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000481 ! multi-tissue structure @@ -341710,6 +358151,8 @@ id: UBERON:0016855 name: ventral part of optic cup def: "The ventral region of the optic cup that gives rise to the ventral part of the retina." [http://orcid.org/0000-0002-6601-2165] comment: optic fissure, hyaloid artery, pecten +subset: human_subset +subset: mouse_subset synonym: "ventral optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "ventral region of optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000481 ! multi-tissue structure @@ -341723,6 +358166,8 @@ relationship: part_of UBERON:0003072 ! optic cup id: UBERON:0016856 name: digit 6 def: "A digit that is part of a digit 6 plus metapodial segment." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "autopod digit 6" EXACT [] synonym: "digit VI" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "limb digit 6" EXACT [] @@ -341737,6 +358182,8 @@ property_value: ray_number "6" xsd:nonNegativeInteger id: UBERON:0016857 name: digit 7 def: "A digit that is part of a digit 7 plus metapodial segment." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "autopod digit 7" EXACT [] synonym: "digit VII" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "limb digit 7" EXACT [] @@ -341751,6 +358198,8 @@ property_value: ray_number "7" xsd:nonNegativeInteger id: UBERON:0016858 name: digit 8 def: "A digit that is part of a digit 8 plus metapodial segment." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "autopod digit 8" EXACT [] synonym: "digit VIII" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] synonym: "eighth digit" EXACT [] @@ -341765,6 +358214,8 @@ property_value: ray_number "8" xsd:nonNegativeInteger id: UBERON:0016866 name: digit 6 plus metapodial segment def: "A subdivision of the autopod consisting of digit 6 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit 6" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "digit 6 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 6 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -341780,6 +358231,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:0016867 name: digit 7 plus metapodial segment def: "A subdivision of the autopod consisting of digit 7 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit 7" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "digit 7 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 7 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -341795,6 +358248,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:0016868 name: digit 8 plus metapodial segment def: "A subdivision of the autopod consisting of digit 8 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit 8" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "digit 8 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 8 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -341810,6 +358265,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:0016876 name: digit 6 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 6 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit 6" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 6 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "digit VI digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -341825,6 +358282,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:0016877 name: digit 7 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 7 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit 7" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 7 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "digit VII digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -341840,6 +358299,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:0016878 name: digit 8 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 8 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit 8" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 8 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "digit VIII digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -341856,6 +358317,8 @@ id: UBERON:0016879 name: future central nervous system alt_id: UBERON:3000469 def: "Primordium that develops into the central nervous system." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "future CNS" EXACT [] synonym: "presumptive central nervous system" EXACT [] is_a: UBERON:0006598 ! presumptive structure @@ -341871,6 +358334,8 @@ id: UBERON:0016880 name: future nervous system alt_id: UBERON:3000477 def: "Primordium that develops into the nervous system." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "presumptive nervous system" EXACT [AAO:0000477] xref: AAO:0000477 is_a: UBERON:0006598 ! presumptive structure @@ -341884,6 +358349,8 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:0016881 name: craniopharyngeal canal def: "The craniopharyngeal canal, is an anatomical feature sometimes found in the sphenoid bone opening to the sella turcica. It is a canal (a passage or channel) sometimes found extending from the anterior part of the fossa hypophyseos of the sphenoid bone to the under surface of the skull, and marks the original position of Rathke's pouch; while at the junction of the septum of the nose with the palate traces of the stomodeal end are occasionally present." [Wikipedia:Craniopharyngeal_canal] +subset: human_subset +subset: mouse_subset synonym: "bucconeural duct" RELATED [] synonym: "craniopharyngeal duct" RELATED [Wikipedia:Craniopharyngeal_canal] xref: CALOHA:TS-2347 @@ -341901,6 +358368,8 @@ relationship: part_of UBERON:0001677 ! sphenoid bone id: UBERON:0016882 name: intertarsal-type crurotarsal joint def: "An ankle joint that passes between the astragalus and calcaneum." [http://palaeos.com/vertebrates/glossary/glossaryCr.html#Crurotarsal%20joint] +subset: human_subset +subset: mouse_subset synonym: "crurotarsal joint" RELATED [ISBN:0073040584] synonym: "intertarsal joint" RELATED [ISBN:0073040584] is_a: UBERON:0001488 {source="UBERON"} ! ankle joint @@ -341910,6 +358379,8 @@ property_value: taxon_notes "The ankle joint of pseudosuchians (including crocod id: UBERON:0016883 name: ovarian fossa def: "A shallow depression on the lateral wall of the pelvis, wherein the ovary lies. This fossa has the following boundaries: superiorly: by the external iliac vessels anteriorly and inferiorly: by the broad ligament of the uterus posteriorly: by the ureter and internal iliac vessels." [MGI:anna, Wikipedia:Ovarian_fossa] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "Claudius fossa" EXACT [MGI:anna] synonym: "fossa ovarica" EXACT OMO:0003011 [Wikipedia:Ovarian_fossa] @@ -341924,6 +358395,8 @@ relationship: part_of UBERON:0005449 ! greater sac id: UBERON:0016884 name: shoulder joint def: "The joint that is formed by the union of the humerus, the scapula (or shoulder blade), and the clavicle (or collarbone). Commonly thought of as a single joint, the shoulder is actually made up of two separate joints - the glenohumeral and acromioclavicular joints." [http://www.innerbody.com/image/skel17.html] +subset: human_subset +subset: mouse_subset synonym: "joint of shoulder region" EXACT [] xref: MESH:D012785 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:361835002 @@ -341937,6 +358410,8 @@ relationship: part_of UBERON:0001467 ! shoulder id: UBERON:0016885 name: epithelium of terminal part of digestive tract def: "Epithelium lining the distalmost portion of the digestive tract." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "rectum epithelium" NARROW [BTO:0005445] xref: BTO:0005445 xref: WBbt:0005800 @@ -341949,6 +358424,8 @@ relationship: part_of UBERON:0006866 ! terminal part of digestive tract id: UBERON:0016886 name: muscle tissue of terminal part of digestive tract def: "Any muscle tissue of the distalmost portion of the digestive tract." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "rectum muscle" NARROW [] synonym: "rectum muscle structure" NARROW [] is_a: UBERON:0002385 ! muscle tissue @@ -341960,6 +358437,8 @@ relationship: part_of UBERON:0006866 ! terminal part of digestive tract id: UBERON:0016887 name: entire extraembryonic component def: "The part of the conceptus that may be lost before birth or will be discarded at birth, or when the embryo becomes an independent organism." [AEO:0000195, AEO:JB] +subset: human_subset +subset: mouse_subset synonym: "extra-embryonic component" EXACT [] synonym: "extraembryonic component" EXACT [AEO:0000195] xref: AEO:0000195 @@ -341974,12 +358453,16 @@ relationship: part_of UBERON:0004716 {source="AEO"} ! conceptus id: UBERON:0016888 name: transitional anatomical structure def: "An embryonic anatomical entity that will turn into one or more other anatomical entities, perhaps with other anatomical entities, later in development." [AEO:0000132, AEO:JB] +subset: human_subset +subset: mouse_subset xref: AEO:0000132 is_a: UBERON:0005423 {source="AEO"} ! developing anatomical structure [Term] id: UBERON:0016890 name: intrahepatic branch of portal vein +subset: human_subset +subset: mouse_subset synonym: "intrahepatic part of portal vein" EXACT [FMA:15417] xref: FMA:15417 xref: SCTID:304373004 @@ -341991,6 +358474,8 @@ relationship: part_of UBERON:0002107 {source="FMA"} ! liver id: UBERON:0016896 name: periosteum of long bone def: "A periosteum that is part of a long bone." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "long bone periosteum" EXACT [FMA:32677] xref: FMA:32677 is_a: UBERON:0002515 ! periosteum @@ -342001,6 +358486,8 @@ relationship: part_of UBERON:0002495 ! long bone [Term] id: UBERON:0016910 name: frenulum of lip +subset: human_subset +subset: mouse_subset synonym: "frenulum labii" EXACT [] synonym: "labial frenulum" EXACT [] synonym: "lip frenulum" EXACT [FMA:59820] @@ -342019,6 +358506,8 @@ relationship: part_of UBERON:0001833 ! lip id: UBERON:0016912 name: frenulum of upper lip def: "A frenulum of lip that is part of a upper lip." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "f. labii superioris" EXACT OMO:0003011 [] synonym: "frenulum labii superioris" EXACT OMO:0003011 [] synonym: "upper lip frenulum" EXACT [FMA:59821] @@ -342036,6 +358525,8 @@ relationship: part_of UBERON:0005031 {source="FMA"} ! mucosa of upper lip id: UBERON:0016913 name: frenulum of lower lip def: "A frenulum of lip that is part of a lower lip." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "f. labii inferioris" RELATED OMO:0003011 [Wikipedia:Frenulum_of_lower_lip] synonym: "frenulum labii inferioris" EXACT [] synonym: "frenulum labii inferioris" RELATED OMO:0003011 [Wikipedia:Frenulum_of_lower_lip] @@ -342054,6 +358545,8 @@ relationship: part_of UBERON:0005032 {source="FMA"} ! mucosa of lower lip [Term] id: UBERON:0016914 name: lamina lucida +subset: human_subset +subset: mouse_subset synonym: "electron-lucent layer of basal lamina of connective tissue" EXACT [FMA:62921] synonym: "lamina rara" EXACT [FMA:62921] xref: FMA:62921 @@ -342066,6 +358559,8 @@ relationship: part_of UBERON:0000482 {source="FMA"} ! basal lamina of epithelium id: UBERON:0016915 name: vermilion def: "The zone of the skin that surrounds a lip and is colored red due to thin epithelium and presence of eleidin." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "vermilion border" BROAD [] synonym: "vermilion border of lip" EXACT [] synonym: "vermilion of lip" EXACT [] @@ -342084,6 +358579,8 @@ relationship: surrounds UBERON:0001833 ! lip id: UBERON:0016918 name: upper vermilion def: "A vermilion that is part of a upper lip." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "vermilion border of upper lip" EXACT [] synonym: "vermilion of upper lip" EXACT [FMA:59827] xref: FMA:59827 @@ -342098,6 +358595,8 @@ relationship: part_of UBERON:0001834 ! upper lip id: UBERON:0016919 name: lower vermilion def: "A vermilion that is part of a lower lip." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "vermilion border of lower lip" EXACT [] synonym: "vermilion of lower lip" EXACT [FMA:59828] xref: FMA:59828 @@ -342111,6 +358610,8 @@ relationship: part_of UBERON:0001835 ! lower lip [Term] id: UBERON:0016920 name: descending trunk of arch of aorta +subset: human_subset +subset: mouse_subset synonym: "descending aortic arch" EXACT [HP:0012305] synonym: "descending limb of arch of aorta" EXACT [FMA:13082] synonym: "descending trunk of aortic arch" EXACT [FMA:13082] @@ -342123,6 +358624,8 @@ relationship: part_of UBERON:0001508 {source="FMA"} ! arch of aorta id: UBERON:0016923 name: preductal region of aortic arch def: "Area of aorta proximal to the ductus arteriosus." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "preligamental region of aortic arch" EXACT [FMA:3774] xref: FMA:3774 xref: SCTID:197773005 @@ -342134,6 +358637,8 @@ relationship: part_of UBERON:0016920 {source="FMA"} ! descending trunk of arch o id: UBERON:0016924 name: postductal region of aortic arch def: "Area of aorta distal to the ductus arteriosus." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "postligamental region of aortic arch" EXACT [FMA:3776] xref: FMA:3776 xref: SCTID:197852003 @@ -342145,6 +358650,8 @@ relationship: part_of UBERON:0016920 {source="FMA"} ! descending trunk of arch o id: UBERON:0016925 name: juxtaductal region of aortic arch def: "Area of aorta at the area of insertion to the ductus arteriosus." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "aortic isthmus" RELATED [] synonym: "isthmus aorta" EXACT [FMA:3771] synonym: "juxtaligamental region of aortic arch" EXACT [FMA:3778] @@ -342160,6 +358667,8 @@ relationship: part_of UBERON:0016920 {source="FMA"} ! descending trunk of arch o id: UBERON:0016926 name: mucus body coating def: "A coating of mucus that is produced by the skin and covers all or most of the body of an animal." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "mucous body coating" RELATED [] xref: BTO:0005082 is_a: UBERON:0010152 ! skin mucus @@ -342170,6 +358679,8 @@ property_value: function_notes "The epidermal mucus of fish regulates swimming s id: UBERON:0016927 name: mucus cocoon def: "A mucous covering produced nocturnally by some fish that is used to envelope the whole animal." [PMID:21084337] +subset: human_subset +subset: mouse_subset synonym: "mucous cocoon" RELATED [] is_a: UBERON:0000912 ! mucus relationship: surrounds UBERON:0000468 ! multicellular organism @@ -342178,6 +358689,8 @@ relationship: surrounds UBERON:0000468 ! multicellular organism id: UBERON:0016928 name: metaphysis of fibula def: "A metaphysis that is part of a fibula." [UBERON:nv] +subset: human_subset +subset: mouse_subset synonym: "fibula metaphysis" EXACT [FMA:33745] synonym: "fibular metaphysis" EXACT [] xref: FMA:33745 @@ -342191,6 +358704,8 @@ relationship: part_of UBERON:0001446 ! fibula id: UBERON:0016929 name: lingual cusp of tooth def: "A medially (towards the tongue)) raised feature found on crown of a tooth." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset synonym: "cuspis lingualis" EXACT OMO:0003011 [FMA:TA] synonym: "lingual cusp" EXACT [FMA:56490] xref: FMA:56490 @@ -342201,6 +358716,8 @@ is_a: UBERON:0006844 {source="FMA"} ! cusp of tooth id: UBERON:0016930 name: ridge of tooth def: "A linear flat evelation on a tooth." [Wikipedia:Dental_anatomy#Ridges] +subset: human_subset +subset: mouse_subset synonym: "crista of tooth" EXACT [] synonym: "tooth ridge" EXACT [] xref: SCTID:245699009 @@ -342212,6 +358729,8 @@ relationship: part_of UBERON:0001091 ! calcareous tooth id: UBERON:0016931 name: transverse ridge of tooth def: "Triangular ridges facing each other and crossing at transverse angle, forming a transverse ridge on posterior teeth." [PHENOSCAPE:curators] +subset: human_subset +subset: mouse_subset synonym: "crista transversalis (corona dentis)" EXACT [FMA:56658] synonym: "crista transversalis dentis" EXACT OMO:0003011 [FMA:56658, FMA:TA] synonym: "crista transversalis of tooth" EXACT [FMA:56658] @@ -342222,6 +358741,8 @@ is_a: UBERON:0016930 ! ridge of tooth [Term] id: UBERON:0016932 name: triangular ridge of tooth +subset: human_subset +subset: mouse_subset synonym: "crista triangularis (corona dentis)" EXACT [FMA:56659] synonym: "crista triangularis dentis" EXACT OMO:0003011 [FMA:56659, FMA:TA] synonym: "crista triangularis of tooth" EXACT [FMA:56659] @@ -342232,6 +358753,8 @@ is_a: UBERON:0016930 ! ridge of tooth [Term] id: UBERON:0016933 name: oblique ridge of tooth +subset: human_subset +subset: mouse_subset synonym: "crista obliqua (corona dentis)" EXACT [FMA:56660] synonym: "crista obliqua dentis" EXACT OMO:0003011 [FMA:56660, FMA:TA] synonym: "oblique ridge of crown of tooth" EXACT [FMA:56660] @@ -342242,6 +358765,8 @@ is_a: UBERON:0016930 ! ridge of tooth [Term] id: UBERON:0016934 name: marginal ridge of tooth +subset: human_subset +subset: mouse_subset synonym: "crista marginalis (dentis)" EXACT [FMA:56758] synonym: "crista marginalis dentis" EXACT OMO:0003011 [FMA:56758, FMA:TA] synonym: "crista marginalis of tooth" EXACT [FMA:56758] @@ -342252,6 +358777,8 @@ is_a: UBERON:0016930 ! ridge of tooth [Term] id: UBERON:0016937 name: transverse marginal ridge of tooth +subset: human_subset +subset: mouse_subset synonym: "transverse marginal ridge of tooth" EXACT [] xref: SCTID:245702002 is_a: UBERON:0016934 ! marginal ridge of tooth @@ -342259,6 +358786,8 @@ is_a: UBERON:0016934 ! marginal ridge of tooth [Term] id: UBERON:0016938 name: mesial marginal ridge of tooth +subset: human_subset +subset: mouse_subset synonym: "mesial marginal ridge of tooth" EXACT [] xref: SCTID:278475009 is_a: UBERON:0016934 ! marginal ridge of tooth @@ -342266,6 +358795,8 @@ is_a: UBERON:0016934 ! marginal ridge of tooth [Term] id: UBERON:0016939 name: distal marginal ridge of tooth +subset: human_subset +subset: mouse_subset synonym: "distal marginal ridge of tooth" EXACT [] xref: SCTID:278476005 is_a: UBERON:0016934 ! marginal ridge of tooth @@ -342273,6 +358804,8 @@ is_a: UBERON:0016934 ! marginal ridge of tooth [Term] id: UBERON:0016942 name: rostral margin of orbit +subset: human_subset +subset: mouse_subset is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001697 ! orbit of skull @@ -342281,6 +358814,7 @@ relationship: part_of UBERON:0001697 ! orbit of skull id: UBERON:0016943 name: lower premolar tooth alt_id: UBERON:4200143 +subset: human_subset synonym: "lower premolar tooth" EXACT [] synonym: "LP" BROAD OMO:0003000 [] synonym: "mandibular premolar tooth" EXACT [] @@ -342294,6 +358828,7 @@ relationship: part_of UBERON:0001710 ! lower jaw region id: UBERON:0016944 name: upper premolar tooth alt_id: UBERON:4200144 +subset: human_subset synonym: "maxillary premolar tooth" EXACT [] synonym: "UP" BROAD OMO:0003000 [] synonym: "upper premolar tooth" EXACT [] @@ -342321,6 +358856,8 @@ is_a: UBERON:0017196 ! retractor lateralis muscle [Term] id: UBERON:0017102 name: flexor cruris lateralis pars accessoria muscle +subset: human_subset +subset: mouse_subset synonym: "M. flexor cruris lateralis pars accessoria" EXACT [] synonym: "pars accessoria of M. flexor cruris lateralis" EXACT [] is_a: UBERON:0017156 ! flexor cruris lateralis muscle @@ -342328,6 +358865,8 @@ is_a: UBERON:0017156 ! flexor cruris lateralis muscle [Term] id: UBERON:0017156 name: flexor cruris lateralis muscle +subset: human_subset +subset: mouse_subset synonym: "M. flexor cruris lateralis" EXACT [] is_a: UBERON:0000366 ! flexor muscle is_a: UBERON:0003663 ! hindlimb muscle @@ -342337,6 +358876,8 @@ relationship: part_of UBERON:0002103 ! hindlimb id: UBERON:0017157 name: exoccipital-atlas joint def: "A synovial joint that connects a vertebral bone 1 and connects a exoccipital bone." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "atlanto-exoccipital joint" EXACT [] is_a: UBERON:0002217 ! synovial joint intersection_of: UBERON:0002217 ! synovial joint @@ -342386,6 +358927,8 @@ relationship: part_of UBERON:0008812 ! hemipenis id: UBERON:0017163 name: skin bony tubercle def: "A bony structure embedded in skin, roughly equivalent to osteoderms." [PHENOSCAPE:Nizar] +subset: human_subset +subset: mouse_subset synonym: "bony tubercle" BROAD [] synonym: "bony tubercles" RELATED OMO:0003004 [] is_a: UBERON:0005813 ! tubercle @@ -342429,6 +358972,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0017249 name: incisive process of premaxilla def: "A small protuberence on the lingual surface of the premaxilla, immediately posterior to the teeth." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset synonym: "incisive bone" RELATED [] synonym: "incisive process" RELATED [] is_a: UBERON:0010313 ! neural crest-derived structure @@ -342462,6 +359007,8 @@ relationship: part_of UBERON:0017258 ! placentome of cotyledonary placenta id: UBERON:0017261 name: intertarsal sesamoid def: "A sesamoid element that is part of a tarsal skeleton." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "tarsal sesamoid" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011141 ! appendicular ossicle @@ -342473,6 +359020,7 @@ relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0017269 name: primary premolar tooth +subset: human_subset synonym: "deciduous premolar tooth" EXACT [] synonym: "primary bicuspid" RELATED [] synonym: "primary premolar" EXACT [] @@ -342486,6 +359034,7 @@ relationship: part_of UBERON:0007116 ! primary dentition [Term] id: UBERON:0017270 name: secondary premolar tooth +subset: human_subset synonym: "permanent premolar tooth" EXACT [] synonym: "secondary bicuspid" RELATED [] synonym: "secondary premolar" EXACT [] @@ -342499,6 +359048,7 @@ relationship: part_of UBERON:0007774 ! secondary dentition [Term] id: UBERON:0017271 name: upper primary premolar tooth +subset: human_subset synonym: "maxillary primary premolar tooth" EXACT [] synonym: "upper deciduous premolar tooth" EXACT [] is_a: UBERON:0016944 ! upper premolar tooth @@ -342513,6 +359063,7 @@ relationship: part_of UBERON:0007116 ! primary dentition [Term] id: UBERON:0017272 name: lower primary premolar tooth +subset: human_subset synonym: "lower deciduous premolar tooth" EXACT [] synonym: "mandibular primary premolar tooth" EXACT [] is_a: UBERON:0016943 ! lower premolar tooth @@ -342536,6 +359087,8 @@ relationship: part_of UBERON:0008812 ! hemipenis id: UBERON:0017295 name: cingulum of tooth def: "The portion of the teeth, occurring on the lingual or palatal aspects, that forms a convex protuberance at the cervical third of the anatomic crown. It represents the lingual or palatal developmental lobe of these teeth." [Wikipedia:Cingulum_(tooth)] +subset: human_subset +subset: mouse_subset synonym: "cingulum (dentis)" EXACT [FMA:56731] synonym: "cingulum dentis" EXACT OMO:0003011 [FMA:56731, FMA:TA] synonym: "tooth cingulum" EXACT [FMA:56731] @@ -342549,6 +359102,8 @@ property_value: external_ontology_notes "FMA has no definition but places this g [Term] id: UBERON:0017296 name: cingulum of incisor tooth +subset: human_subset +subset: mouse_subset synonym: "incisor tooth cingulum" EXACT [FMA:56733] xref: FMA:56733 is_a: UBERON:0017295 ! cingulum of tooth @@ -342559,6 +359114,7 @@ relationship: part_of UBERON:0001098 ! incisor tooth [Term] id: UBERON:0017297 name: cingulum of canine tooth +subset: human_subset synonym: "canine tooth cingulum" EXACT [FMA:56734] xref: FMA:56734 is_a: UBERON:0017295 ! cingulum of tooth @@ -342569,6 +359125,8 @@ relationship: part_of UBERON:0003674 ! cuspid [Term] id: UBERON:0017298 name: cingulum of upper incisor tooth +subset: human_subset +subset: mouse_subset synonym: "cingulum of maxillary incisor tooth" EXACT [FMA:56736] synonym: "upper incisor tooth cingulum" EXACT [FMA:56736] xref: FMA:56736 @@ -342583,6 +359141,8 @@ relationship: part_of UBERON:0001709 ! upper jaw region [Term] id: UBERON:0017299 name: cingulum of lower incisor tooth +subset: human_subset +subset: mouse_subset synonym: "cingulum of mandibular incisor tooth" EXACT [FMA:56737] synonym: "lower incisor tooth cingulum" EXACT [FMA:56737] xref: FMA:56737 @@ -342597,6 +359157,7 @@ relationship: part_of UBERON:0001710 ! lower jaw region [Term] id: UBERON:0017312 name: cingulum of upper canine tooth +subset: human_subset synonym: "cingulum of maxillary canine tooth" EXACT [FMA:56752] synonym: "upper canine tooth cingulum" EXACT [FMA:56752] xref: FMA:56752 @@ -342610,6 +359171,7 @@ relationship: part_of UBERON:0018621 ! upper canine tooth [Term] id: UBERON:0017313 name: cingulum of lower canine tooth +subset: human_subset synonym: "cingulum of mandibular canine tooth" EXACT [FMA:56753] synonym: "lower canine tooth cingulum" EXACT [FMA:56753] xref: FMA:56753 @@ -342624,6 +359186,8 @@ relationship: part_of UBERON:0018622 ! lower canine tooth id: UBERON:0017612 name: cingulum of lower jaw molar def: "A ridge that girdles the base of a lower molar tooth." [http://en.wiktionary.org/wiki/cingulid] +subset: human_subset +subset: mouse_subset synonym: "cingulid" BROAD [] synonym: "cingulid of molar tooth" EXACT [] synonym: "tooth cingulid" RELATED [] @@ -342639,6 +359203,8 @@ relationship: part_of UBERON:0003655 ! molar tooth id: UBERON:0017613 name: cingulum of upper jaw molar def: "A ridge that girdles the base of a upper molar tooth." [http://en.wiktionary.org/wiki/cingulum] +subset: human_subset +subset: mouse_subset synonym: "cingulum" BROAD [] is_a: UBERON:0013613 ! upper jaw cingulum is_a: UBERON:0017614 ! cingulum of molar tooth @@ -342651,6 +359217,8 @@ relationship: part_of UBERON:0003655 ! molar tooth [Term] id: UBERON:0017614 name: cingulum of molar tooth +subset: human_subset +subset: mouse_subset is_a: UBERON:0017295 ! cingulum of tooth intersection_of: UBERON:0017295 ! cingulum of tooth intersection_of: part_of UBERON:0003655 ! molar tooth @@ -342660,6 +359228,8 @@ relationship: part_of UBERON:0003655 ! molar tooth id: UBERON:0017615 name: vomerine dentition def: "A set of teeth in which each tooth that attaches to a vomer." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "vomerine teeth" RELATED [] is_a: UBERON:0003672 ! dentition is_a: UBERON:0010314 ! structure with developmental contribution from neural crest @@ -342698,6 +359268,8 @@ id: UBERON:0017618 name: extensor pollicis brevis muscle def: "The Extensor pollicis brevis lies on the medial side of, and is closely connected with, the Abductor pollicis longus." [Wikipedia:Extensor_pollicis_brevis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "extensor pollicis" RELATED [Wikipedia:Extensor_pollicis_brevis_muscle] synonym: "extensor pollicis brevis" EXACT [FMA:38518] xref: EMAPA:36195 @@ -342711,6 +359283,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0017620 name: spine appendage of head def: "A spine appendage that is part of a head." [OBOL:automatic] +subset: mouse_subset is_a: UBERON:0008260 ! spine appendage intersection_of: UBERON:0008260 ! spine appendage intersection_of: part_of UBERON:0000033 ! head @@ -342755,6 +359328,8 @@ relationship: in_taxon NCBITaxon:117893 ! Batoidea id: UBERON:0017626 name: transverse folds of rectum def: "Houston's valves (or transverse folds of rectum) are semi-lunar transverse folds of the rectal wall that protrude into the anal canal. Their use seems to be to support the weight of fecal matter, and prevent its urging toward the anus, which would produce a strong urge to defecate. Although the term rectum means straight, these transverse folds overlap each other during the empty state of the intestine to such an extent that, as Houston remarked, they require considerable maneuvering to conduct an instrument along the canal, as often occurs in sigmoidoscopy and colonoscopy. These folds are about 12 mm. in width and are composed of the circular muscle coat of the rectum. They are usually three in number; sometimes a fourth is found, and occasionally only two are present. One is situated near the commencement of the rectum, on the right side. A second extends inward from the left side of the tube, opposite the middle of the sacrum. A third, the largest and most constant, projects backward from the forepart of the rectum, opposite the fundus of the urinary bladder. When a fourth is present, it is situated nearly 2.5 cm above the anus on the left and posterior wall of the tube." [Wikipedia:Houston_valve] +subset: human_subset +subset: mouse_subset synonym: "Houston's valve" RELATED [Wikipedia:Houston_valve] synonym: "Houston's valve (middle of three)" EXACT [FMA:75657] synonym: "Houston's valves" RELATED [Wikipedia:Houston_valve] @@ -342772,6 +359347,8 @@ relationship: part_of UBERON:0001052 ! rectum id: UBERON:0017627 name: rectal valve def: "A thin diaphragm located in the posterior fifth of the intestine of some Centrolophidae, e.g. Seriolella punctata, Schedophilus huttoni and Psenes pellucidus, or in others a sphincter-like constriction, e.g. Seriolella brama. A deep purple fluid was confined to the valve in S. punctata, but was found throughout the intestine in the other two species referred to. The fluid might be used to void a coloured cloud to distract or deter a predator." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003978 ! valve relationship: part_of UBERON:0001052 ! rectum @@ -342803,6 +359380,8 @@ relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0017631 name: calcified structure of brain +subset: human_subset +subset: mouse_subset xref: Wikipedia:Corpora_arenacea is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure @@ -342816,6 +359395,8 @@ relationship: part_of UBERON:0000955 ! brain id: UBERON:0017632 name: pineal corpora arenacea def: "A calcified structure of brain that is part of a pineal body." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: SCTID:369232008 xref: Wikipedia:Corpora_arenacea is_a: UBERON:0017631 ! calcified structure of brain @@ -342827,6 +359408,8 @@ relationship: part_of UBERON:0001905 ! pineal body id: UBERON:0017633 name: choroid plexus corpora arenacea def: "A calcified structure of brain that is part of a choroid plexus." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0017631 ! calcified structure of brain intersection_of: UBERON:0017631 ! calcified structure of brain intersection_of: part_of UBERON:0001886 ! choroid plexus @@ -342844,6 +359427,8 @@ relationship: in_taxon NCBITaxon:9348 ! Xenarthra [Term] id: UBERON:0017635 name: paired venous dural sinus +subset: human_subset +subset: mouse_subset synonym: "paired dural venous sinus" EXACT [FMA:52568] xref: FMA:52568 is_a: UBERON:0003496 ! head blood vessel @@ -342859,6 +359444,8 @@ id: UBERON:0017637 name: marginal venous sinus def: "A paired dural venous sinus at the rim of the foramen magnum." [PMID:20682099] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "intracranial marginal sinus" EXACT [] synonym: "marginal sinus" RELATED [FMA:50766] xref: EHDAA2:0001064 @@ -342873,16 +359460,21 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0017638 name: primitive marginal sinus def: "The primitive marginal sinuses (PMS) are embryonic sinuses forming the later superior sagittal sinus." [PMID:22744799] +subset: human_subset +subset: mouse_subset synonym: "marginal sinus" RELATED [] xref: EHDAA2:0001514 is_a: UBERON:0017635 ! paired venous dural sinus relationship: develops_from UBERON:0006282 {source="EHDAA2"} ! primary head vein relationship: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:8450003 ! embryonic craniocervical region [Term] id: UBERON:0017639 name: sinus of von Szily def: "A circular gap in the iris near the pupil between the layers of the optic cup (von Szily, 1902)." [DOI:10.1007/BF00413234, http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "marginal sinus" RELATED [] synonym: "marginal sinus (v. Szily)" EXACT [] synonym: "marginal sinus of von Szily" EXACT [] @@ -342895,6 +359487,8 @@ property_value: taxon_notes "In humans, present in month 3-7 pc." xsd:string [Term] id: UBERON:0017640 name: unpaired venous dural sinus +subset: human_subset +subset: mouse_subset synonym: "unpaired dural venous sinus" EXACT [FMA:52569] xref: FMA:52569 is_a: UBERON:0005486 ! venous dural sinus @@ -342904,6 +359498,8 @@ id: UBERON:0017641 name: meningeal branch of spinal nerve def: "Branch of spinal nerve that innervates the structures of the vertebral column." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Spinal_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ramus meningeus nervorum spinales" EXACT [FMA:5988] synonym: "recurrent meningeal branch of spinal nerve" EXACT [FMA:5988] synonym: "sinuvertebral branch of spinal nerve" EXACT [FMA:5988] @@ -342921,6 +359517,8 @@ id: UBERON:0017642 name: communicating branch of spinal nerve def: "Rami communicans (plural rami communicantes) is the term used for a nerve which connects two other nerves. When used without further definition, it almost always refers to a communicating branch between a spinal nerve and the sympathetic trunk. More specifically, it usually refers to one of the following: Gray ramus communicans White ramus communicans." [Wikipedia:Rami_communicans] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "rami communicantes" BROAD [Wikipedia:Rami_communicans] synonym: "rami communicantes of spinal nerve" RELATED [Wikipedia:Rami_communicans] xref: FMA:5874 @@ -342935,6 +359533,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0017643 name: external thoracic vein def: "Extension of the long thoracic vein that collects blood from the mammary glands." [ISBN:978-0226870137] +subset: human_subset +subset: mouse_subset synonym: "external mammary vein" RELATED [ISBN:978-0226870137] xref: EMAPA:37145 {source="MA:th"} xref: MA:0002236 @@ -342944,6 +359544,8 @@ is_a: UBERON:0005194 {source="MA"} ! thoracic vein id: UBERON:0017646 name: internal mammary vein def: "One of two veins running parallel to their corresponding internal mammary arteries that unite forming one vessel. These veins drain the chest wall into the innominate vein." [ncithesaurus:Internal_Mammary_Vein] +subset: human_subset +subset: mouse_subset xref: EMAPA:37159 {source="MA:th"} xref: MA:0002148 xref: NCIT:C32854 @@ -342953,6 +359555,8 @@ is_a: UBERON:0001638 {source="ncithesaurus"} ! vein id: UBERON:0017647 name: prevertebral muscle of neck def: "A prevertebral muscle that is part of a neck." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: EMAPA:25130 xref: MA:0003144 is_a: UBERON:0002377 ! muscle of neck @@ -342965,6 +359569,8 @@ relationship: part_of UBERON:0000974 ! neck id: UBERON:0017648 name: ventral body wall def: "The ventral part of the body wall." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "anterior body wall" RELATED [FMA:86934] xref: EMAPA:37984 {source="MA:th"} xref: FMA:86934 @@ -342977,6 +359583,8 @@ relationship: part_of UBERON:0013235 ! ventrum id: UBERON:0017649 name: dorsal body wall def: "The dorsal part of the body wall." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000309 ! body wall intersection_of: UBERON:0000309 ! body wall intersection_of: part_of UBERON:0001137 ! dorsum @@ -342986,6 +359594,8 @@ relationship: part_of UBERON:0001137 ! dorsum id: UBERON:0017650 name: developing mesenchymal structure def: "A mesenchyme-derived anatomical entity undergoing a transtion to become another structure." [AEO:0001016, AEO:JB] +subset: human_subset +subset: mouse_subset xref: AEO:0001016 is_a: UBERON:0005423 ! developing anatomical structure intersection_of: UBERON:0005423 ! developing anatomical structure @@ -342996,6 +359606,8 @@ relationship: composed_primarily_of UBERON:0003104 ! mesenchyme id: UBERON:0017651 name: salivary gland primordium def: "A primordium that has the potential to develop into a saliva-secreting gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001048 ! primordium is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0001048 ! primordium @@ -343007,6 +359619,8 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:0017652 name: intermaxillary gland (sensu Osteolepiformes) def: "A gland lodged in a fossa formed mainly of dermal bones, situated wholly in front of the nasal capsules of Osteolepiformes." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +subset: human_subset +subset: mouse_subset synonym: "intermaxillary gland" BROAD [] is_a: UBERON:0002530 ! gland relationship: in_taxon NCBITaxon:8287 ! Sarcopterygii @@ -343027,6 +359641,8 @@ property_value: taxon_notes "The intermaxillary gland is the first salivary glan id: UBERON:0017654 name: buccal gland def: "Any of the small racemose mucous glands in the mucous membrane lining the cheeks." [http://www.merriam-webster.com/medical/buccal%20gland] +subset: human_subset +subset: mouse_subset synonym: "cheek gland" RELATED [] xref: BTO:0005767 xref: SCTID:25421004 @@ -343038,6 +359654,8 @@ relationship: part_of UBERON:0001567 ! cheek [Term] id: UBERON:0017659 name: ventral surface of penis +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "urethral surface of penis" EXACT [FMA:19624] xref: FMA:19624 @@ -343051,6 +359669,8 @@ relationship: part_of UBERON:0000989 ! penis id: UBERON:0017670 name: bony part of cervical vertebral arch def: "A bony part of vertebral arch that is part of a cervical vertebral arch." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bony part of arch of cervical vertebra" EXACT [FMA:29794] xref: FMA:29794 @@ -343063,6 +359683,8 @@ relationship: part_of UBERON:0008434 ! cervical vertebral arch id: UBERON:0017671 name: bony part of vertebral arch of first sacral vertebra def: "A bony part of vertebral arch that is part of a sacral vertebra 1." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "bony part of vertebral arch of first sacral segment" EXACT [FMA:32395] xref: FMA:32395 @@ -343075,6 +359697,8 @@ relationship: part_of UBERON:0004622 ! sacral vertebra 1 id: UBERON:0017672 name: abdominal viscera def: "A viscus that is part of a abdomen." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "abdominal viscera" EXACT [FMA:32413] synonym: "abdominal viscera set" EXACT [FMA:32413] @@ -343090,6 +359714,8 @@ relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0017690 name: internal surface of frontal bone +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "facies interna (os frontale)" EXACT [FMA:52856] synonym: "facies interna ossis frontalis" EXACT OMO:0003011 [FMA:52856, FMA:TA] @@ -343102,6 +359728,8 @@ relationship: part_of UBERON:0000209 ! tetrapod frontal bone id: UBERON:0017692 name: internal surface of cranial base def: "Internal (endosteal) surface of the base of skull." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "basis cranii interna" EXACT OMO:0003011 [FMA:53128, FMA:TA] xref: FMA:53128 @@ -343112,6 +359740,8 @@ relationship: part_of UBERON:0002517 ! basicranium id: UBERON:0017716 name: thenar eminence def: "A raised fleshy area on the palm of the hand near the base of the thumb." [http://medical-dictionary.thefreedictionary.com/Thenar+muscle] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "thenar part of palm" EXACT [FMA:61520] xref: FMA:61520 @@ -343124,6 +359754,8 @@ relationship: part_of UBERON:0008878 {source="FMA"} ! palmar part of manus id: UBERON:0017717 name: hypothenar eminence def: "Hypothenar refers to a group of three muscles of the palm that control the motion of the little finger. The three muscles are: Abductor digiti minimi Flexor digiti minimi Opponens digiti minimi." [Wikipedia:Hypothenar_eminence] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "hypothenar part of palm" EXACT [FMA:61523] xref: FMA:61523 @@ -343136,6 +359768,8 @@ relationship: part_of UBERON:0008878 {source="FMA"} ! palmar part of manus id: UBERON:0017732 name: raphe of scrotum def: "A ridge of tissue that extends along the midline of the scrotum." [HPO:probinson] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "scrotal raphe" EXACT [FMA:75130] xref: FMA:75130 @@ -343158,6 +359792,8 @@ property_value: development_notes "The scrotal raphe is formed when the embryoni id: UBERON:0017748 name: lower primary incisor tooth def: "A primary incisor tooth that is part of a lower jaw region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "deciduous lower incisor tooth" RELATED [FMA:84215] synonym: "lower deciduous incisor tooth" EXACT [FMA:84215] @@ -343175,6 +359811,8 @@ relationship: part_of UBERON:0001710 ! lower jaw region id: UBERON:0017749 name: withers def: "The ridge between the shoulder blades of a four-legged mammal." [Wikipedia:Withers] +subset: human_subset +subset: mouse_subset xref: SCTID:89778005 xref: Wikipedia:Withers is_a: UBERON:0034929 ! external soft tissue zone @@ -343185,6 +359823,8 @@ property_value: taxon_notes "The withers in horses are formed by the dorsal spin id: UBERON:0017750 name: proximal mesopodial endochondral element def: "A mesopodial endochondral element that is in the most proximal part of the mesopodial skeleton, connected to the zeugopodial skeleton." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015063 ! autopod endochondral element intersection_of: UBERON:0010363 ! endochondral element intersection_of: connected_to UBERON:0011584 ! zeugopodial skeleton @@ -343198,6 +359838,8 @@ property_value: editor_note "awaiting approval by phenoscape curators" xsd:strin id: UBERON:0017751 name: proximal mesopodial cartilage element def: "A proximal mesopodial endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015064 ! autopod cartilage is_a: UBERON:0017750 ! proximal mesopodial endochondral element intersection_of: UBERON:0017750 ! proximal mesopodial endochondral element @@ -343208,6 +359850,8 @@ relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue id: UBERON:0018099 name: distal mesopodial endochondral element def: "An endochondral element in the distal portion of the mesopodial skeleton, between the central mesopodial skeleton and the metapodial skeleton." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "distal mesopodial" EXACT SYSTEMATIC [UBERON:cjm] is_a: UBERON:0015063 ! autopod endochondral element relationship: part_of UBERON:0009878 ! mesopodial skeleton @@ -343217,6 +359861,8 @@ property_value: editor_note "TODO add logical definition" xsd:string id: UBERON:0018100 name: distal mesopodial cartilage element def: "A distal mesopodial endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015064 ! autopod cartilage is_a: UBERON:0018099 ! distal mesopodial endochondral element intersection_of: UBERON:0018099 ! distal mesopodial endochondral element @@ -343228,6 +359874,8 @@ relationship: develops_from UBERON:0018101 ! distal mesopodial pre-cartilage con id: UBERON:0018101 name: distal mesopodial pre-cartilage condensation def: "A distal mesopodial endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0018099 ! distal mesopodial endochondral element intersection_of: UBERON:0018099 ! distal mesopodial endochondral element @@ -343238,6 +359886,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0018102 name: distal mesopodial bone def: "A distal mesopodial endochondral element that is composed primarily of a bone tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0018099 ! distal mesopodial endochondral element intersection_of: UBERON:0018099 ! distal mesopodial endochondral element @@ -343249,6 +359899,8 @@ relationship: develops_from UBERON:0018100 ! distal mesopodial cartilage element id: UBERON:0018103 name: posterior fascicle of palatopharyngeus def: "The thinner portion of the muscle of the palatopharyngeal arch, originating in the region of the midline where its fibers interdigitate with the contralateral partner, then passing posterior to the levator veli palatini muscle to join the longitudinal layer of pharyngeal musculature; acts as a sort of sphincter, reducing the caliber of the isthmus of fauces at the palatopharyngeal arch." [http://medical-dictionary.thefreedictionary.com/velopharyngeal+sphincter] +subset: human_subset +subset: mouse_subset synonym: "fasciculus posterior (musculus palatopharyngeus)" EXACT [FMA:46684] synonym: "fasciculus posterior musculus palatopharyngei" EXACT OMO:0003011 [FMA:46684, FMA:TA] synonym: "musculus sphincter palatopharyngeus" EXACT [FMA:TA] @@ -343264,6 +359916,8 @@ relationship: part_of UBERON:0010234 {source="FMA"} ! palatopharyngeus muscle id: UBERON:0018104 name: parafoveal part of retina def: "The intermediate belt surrounding the fovea centralis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "parafoveal belt" RELATED [] synonym: "parafoveal retina" RELATED [] xref: SCTID:264120002 @@ -343277,6 +359931,8 @@ property_value: structure_notes "ganglion cell layer is composed of more than fi id: UBERON:0018105 name: perifoveal part of retina def: "The outermost region surrounding the fovea centralis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "perifoveal belt" RELATED [] synonym: "perifoveal retina" RELATED [] xref: SCTID:280617008 @@ -343291,6 +359947,8 @@ id: UBERON:0018107 name: foveola of retina def: "A region of the fovea centralis that lies in the center of the fovea and contains only cone cells, and a cone-shaped zone of Müller cells." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "foveola" RELATED [] xref: SCTID:399857002 xref: Wikipedia:Foveola @@ -343304,6 +359962,8 @@ property_value: taxon_notes "in humans is approximately 0.35 mm in diameter" xsd id: UBERON:0018108 name: superior auricular muscle def: "The superior auricular muscle, the largest of the three auriculares muscles, is also thin and fan-shaped. Its fibers arise from the galea aponeurotica, and converge to be inserted by a thin, flattened tendon into the upper part of the cranial surface of the auricula." [Wikipedia:Superior_auricular_muscle] +subset: human_subset +subset: mouse_subset synonym: "auricularis superior" EXACT [FMA:46855] xref: FMA:46855 xref: SCTID:244759009 @@ -343314,6 +359974,8 @@ is_a: UBERON:0001583 {source="FMA"} ! extrinsic auricular muscle id: UBERON:0018109 name: anterior auricular muscle def: "The anterior auricular muscle, the smallest of the three auriculares muscles, is thin and fan-shaped, and its fibers are pale and indistinct. It arises from the lateral edge of the galea aponeurotica, and its fibers converge to be inserted into a projection on the front of the helix." [Wikipedia:Anterior_auricular_muscle_muscle] +subset: human_subset +subset: mouse_subset synonym: "auricularis anterior" EXACT [FMA:46856] xref: FMA:46856 xref: Wikipedia:Anterior_auricular_muscle @@ -343324,6 +359986,8 @@ disjoint_from: UBERON:0018110 {source="lexical"} ! posterior auricular muscle id: UBERON:0018110 name: posterior auricular muscle def: "The posterior auricular muscle consists of two or three fleshy fasciculi, which arise from the mastoid portion of the temporal bone by short aponeurotic fibers. They are inserted into the lower part of the cranial surface of the concha." [Wikipedia:Posterior_auricular_muscle_muscle] +subset: human_subset +subset: mouse_subset synonym: "auricularis posterior" EXACT [FMA:46857] synonym: "post auricular muscle" RELATED [Wikipedia:Posterior_auricular_muscle] synonym: "post-auricular muscle" RELATED [Wikipedia:Posterior_auricular_muscle] @@ -343336,6 +360000,8 @@ is_a: UBERON:0001583 {source="FMA"} ! extrinsic auricular muscle id: UBERON:0018111 name: muscle layer of rectum def: "A muscle layer that is part of the rectum." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "muscular coat of rectum" EXACT [FMA:15035] synonym: "muscularis externa of rectum" EXACT [FMA:15035] synonym: "rectal muscularis propria" EXACT [FMA:15035] @@ -343351,6 +360017,8 @@ relationship: part_of UBERON:0001052 ! rectum id: UBERON:0018112 name: rectum smooth muscle tissue def: "Any portion of smooth muscle tissue that is part of the rectum." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "rectal smooth muscle tissue" EXACT [] synonym: "rectum smooth muscle" EXACT [] synonym: "smooth muscle of rectum" EXACT [] @@ -343365,6 +360033,8 @@ relationship: part_of UBERON:0001052 ! rectum id: UBERON:0018113 name: left kidney interstitium def: "A kidney interstitium that is part of a left kidney." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "left renal stroma" EXACT [FMA:74271] synonym: "stroma of left kidney" EXACT [FMA:74271] xref: FMA:74271 @@ -343377,6 +360047,8 @@ relationship: part_of UBERON:0004538 ! left kidney id: UBERON:0018114 name: right kidney interstitium def: "A kidney interstitium that is part of a right kidney." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "right renal stroma" EXACT [FMA:74270] synonym: "stroma of right kidney" EXACT [FMA:74270] xref: FMA:74270 @@ -343389,6 +360061,8 @@ relationship: part_of UBERON:0004539 ! right kidney id: UBERON:0018115 name: left renal pelvis def: "A renal pelvis that is part of a left ureter." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pelvis of left ureter" EXACT [FMA:15579] synonym: "renal pelvis of left kidney" EXACT [FMA:15579] xref: FMA:15579 @@ -343403,6 +360077,8 @@ relationship: part_of UBERON:0001223 ! left ureter id: UBERON:0018116 name: right renal pelvis def: "A renal pelvis that is part of a right ureter." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "pelvis of right kidney" EXACT [FMA:15578] synonym: "pelvis of right ureter" EXACT [FMA:15578] xref: FMA:15578 @@ -343417,6 +360093,8 @@ relationship: part_of UBERON:0001222 ! right ureter id: UBERON:0018117 name: left renal cortex interstitium def: "A renal cortex interstitium that is part of a left kidney." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cortical interstitial tissue of left kidney" EXACT [] is_a: UBERON:0005270 ! renal cortex interstitium is_a: UBERON:0018113 ! left kidney interstitium @@ -343428,6 +360106,8 @@ relationship: part_of UBERON:0004538 ! left kidney id: UBERON:0018118 name: right renal cortex interstitium def: "A renal cortex interstitium that is part of a right kidney." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "cortical interstitial tissue of right kidney" EXACT [] is_a: UBERON:0005270 ! renal cortex interstitium is_a: UBERON:0018114 ! right kidney interstitium @@ -343439,6 +360119,8 @@ relationship: part_of UBERON:0004539 ! right kidney id: UBERON:0018119 name: left renal medulla interstitium def: "A renal medulla interstitium that is part of a left kidney." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "medullary interstitial tissue of left kidney" EXACT [] is_a: UBERON:0005211 ! renal medulla interstitium is_a: UBERON:0018113 ! left kidney interstitium @@ -343450,6 +360132,8 @@ relationship: part_of UBERON:0004538 ! left kidney id: UBERON:0018120 name: right renal medulla interstitium def: "A renal medulla interstitium that is part of a right kidney." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "medullary interstitial tissue of right kidney" EXACT [] is_a: UBERON:0005211 ! renal medulla interstitium is_a: UBERON:0018114 ! right kidney interstitium @@ -343461,6 +360145,8 @@ relationship: part_of UBERON:0004539 ! right kidney id: UBERON:0018131 name: periovarian fat pad def: "The encapsulated adipose tissue associated with the ovaries." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "ovarian fat pad" RELATED [] synonym: "periovarian fat depot" EXACT [] xref: MA:0003064 @@ -343471,6 +360157,7 @@ relationship: part_of UBERON:0000992 ! ovary id: UBERON:0018132 name: tail fat pad def: "Encapsulated adipose tissue that is part of a tail." [http://orcid.org/0000-0002-6601-2165] +subset: mouse_subset synonym: "tail fat depot" EXACT [] is_a: UBERON:0003599 ! tail connective tissue is_a: UBERON:0003916 ! fat pad @@ -343499,6 +360186,8 @@ relationship: in_taxon NCBITaxon:9255 ! Monotremata id: UBERON:0018134 name: rugal fold of scrotum def: "A folded ridge of skin that is part of a scrotum superficial to the dartos muscle." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "folded ridge of skin of scrotum" EXACT OMO:0003004 [] synonym: "scrotal rugae" EXACT OMO:0003004 [] is_a: UBERON:0015479 ! scrotum skin @@ -343511,6 +360200,8 @@ relationship: part_of UBERON:0015479 ! scrotum skin [Term] id: UBERON:0018135 name: fibrocollagenous connective tissue +subset: human_subset +subset: mouse_subset xref: FMA:83521 is_a: UBERON:0011824 ! fibrous connective tissue intersection_of: UBERON:0011824 ! fibrous connective tissue @@ -343521,6 +360212,8 @@ relationship: has_quality PATO:0002462 ! collagenous id: UBERON:0018136 name: maxillary fenestra def: "A fenestra or hole which pierces the maxilla anterior to the antorbital fenestra." [http://palaeos.com/vertebrates/glossary/glossaryM.html] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004705 ! fenestra intersection_of: UBERON:0004705 ! fenestra intersection_of: part_of UBERON:0002397 ! maxilla @@ -343530,6 +360223,8 @@ relationship: part_of UBERON:0002397 ! maxilla id: UBERON:0018137 name: premaxillary fenestra def: "A fenestra that is part of a premaxilla." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004705 ! fenestra intersection_of: UBERON:0004705 ! fenestra intersection_of: part_of UBERON:0002244 ! premaxilla @@ -343539,6 +360234,8 @@ relationship: part_of UBERON:0002244 ! premaxilla id: UBERON:0018140 name: mammary lobe def: "A cluster of mammary gland lobules. In humans this is a distinct lobe and located in the breast region." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "breast lobe" NARROW HUMAN_PREFERRED [BTO:0004718, NCBITaxon:9606] synonym: "lobe of breast" NARROW HUMAN_PREFERRED [BTO:0004718, NCBITaxon:9606] synonym: "lobe of mammary gland" NARROW HUMAN_PREFERRED [BTO:0004718, NCBITaxon:9606] @@ -343561,6 +360258,8 @@ property_value: editor_note "The FMA class 'lactiferous gland' may be equivalent id: UBERON:0018141 name: anterior perforated substance def: "Regional part of telencephalon lying on the basal surface and bounded by the olfactory trigone rostrally, the diagonal band medially and caudally and the prepiriform cortex laterally. It is characterized by many perforations caused by small blood vessels entering the gray matter (Meyer et al., J. Comp. Neurol 284: 405, 1989)." [BIRNLEX:1096] +subset: human_subset +subset: mouse_subset synonym: "anterior perforated area" EXACT [FMA:61891] synonym: "anterior perforated space" EXACT [FMA:61891] synonym: "area olfactoria (Mai)" RELATED OMO:0003011 [NeuroNames:282] @@ -343589,6 +360288,8 @@ id: UBERON:0018142 name: caudal vertebra endochondral element alt_id: UBERON:0015006 def: "Any vertebra endochondral element that is part of the caudal region of the vertebral column (tail or coccyx)." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "caudal vertebra element" EXACT [] synonym: "coccygeal vertebra element" NARROW [] synonym: "coccyx vertebra element" NARROW [] @@ -343606,6 +360307,8 @@ relationship: part_of UBERON:0006076 ! caudal region of vertebral column id: UBERON:0018143 name: transverse process of cervical vertebra def: "A transverse process that is part of a cervical vertebra." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: FMA:23894 xref: FMA:9913 xref: SCTID:280730000 @@ -343619,6 +360322,7 @@ property_value: taxon_notes "May be homologous with the cervical ribs of some ve id: UBERON:0018144 name: cervical rib def: "A rib that is attached to a cervical vertebra." [http://orcid.org/0000-0002-6601-2165] +subset: mouse_subset xref: EMAPA:37825 {source="MA:th"} xref: MESH:D057070 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002228 ! rib @@ -343647,6 +360351,8 @@ property_value: taxon_notes "May be homologous with the transverse processes of id: UBERON:0018146 name: transverse process of lumbar vertebra def: "A transverse process that is part of a lumbar vertebra." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "costa lumbalis" EXACT OMO:0003011 [FMA:65469, FMA:TA] synonym: "lumbar transverse process" EXACT [FMA:16080] xref: FMA:16080 @@ -343662,6 +360368,7 @@ property_value: taxon_notes "May be homologous with the lumbar ribs of some vert id: UBERON:0018148 name: ampullary gland secretion def: "A bodily secretion that produced_by a ampullary gland." [OBOL:automatic] +subset: mouse_subset is_a: UBERON:0006530 ! seminal fluid intersection_of: UBERON:0000456 ! secretion of exocrine gland intersection_of: produced_by UBERON:0009645 ! ampullary gland @@ -343672,6 +360379,8 @@ id: UBERON:0018149 name: angle of oral opening def: "The lateral limit of each lateral part of the oral fissure." [https://orcid.org/0000-0002-2825-0621, https://www.imaios.com/en/e-Anatomy/Anatomical-Parts/Angle-of-mouth] comment: Serves as attachment site for zygomaticus major muscle. +subset: human_subset +subset: mouse_subset synonym: "angle of mouth" EXACT [FMA:77269] synonym: "mouth angle" EXACT [FMA:77269] xref: FMA:77269 @@ -343685,6 +360394,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/1795" xsd id: UBERON:0018150 name: skin of lower lip def: "A zone of skin that is part of a lower lip." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "lower lip skin" EXACT [FMA:24767] xref: FMA:24767 xref: SCTID:281630002 @@ -343697,6 +360408,8 @@ relationship: part_of UBERON:0001835 ! lower lip id: UBERON:0018151 name: skin of upper lip def: "A zone of skin that is part of a upper lip." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "upper lip skin" EXACT [FMA:24765] xref: FMA:24765 xref: SCTID:281629007 @@ -343709,6 +360422,8 @@ relationship: part_of UBERON:0001834 ! upper lip id: UBERON:0018152 name: pars flaccida of tympanic membrane def: "A small, triangular, flaccid portion of the tympanic membrane, or eardrum, lying above the malleolar folds, attached directly to the petrous bone at the notch of Rivinus." [Wikipedia:Pars_flaccida_of_tympanic_membrane] +subset: human_subset +subset: mouse_subset synonym: "flaccid part" RELATED [Wikipedia:Pars_flaccida_of_tympanic_membrane] synonym: "pars flaccida" RELATED [Wikipedia:Pars_flaccida_of_tympanic_membrane] synonym: "pars flaccida (membrana tympanica)" EXACT OMO:0003011 [FMA:56721] @@ -343724,6 +360439,8 @@ property_value: taxon_notes "Size varies across mammals, with the sheep pars fla [Term] id: UBERON:0018153 name: pars tensa of tympanic membrane +subset: human_subset +subset: mouse_subset synonym: "pars tensa (membrana tympanica)" EXACT [FMA:56722] synonym: "pars tensa membranae tympanicae" EXACT OMO:0003011 [FMA:56722, FMA:TA] xref: FMA:56722 @@ -343735,6 +360452,8 @@ relationship: part_of UBERON:0002364 {source="FMA"} ! tympanic membrane id: UBERON:0018154 name: ligament of middle ear def: "A ligament that is part of a middle ear." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000211 ! ligament intersection_of: UBERON:0000211 ! ligament intersection_of: part_of UBERON:0001756 ! middle ear @@ -343744,6 +360463,8 @@ relationship: part_of UBERON:0001756 ! middle ear id: UBERON:0018155 name: posterior incudal ligament def: "A fold of mucous membrane that runs from the fossa incudus to the incus." [ISBN:9781604061550] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008841 ! suspensory ligament is_a: UBERON:0018154 ! ligament of middle ear relationship: attaches_to UBERON:0001688 ! incus bone @@ -343755,6 +360476,8 @@ relationship: part_of UBERON:0001756 ! middle ear id: UBERON:0018156 name: malleal ligament def: "A skeletal ligament that attaches to the malleus." [ISBN:9781604061550] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008846 ! skeletal ligament is_a: UBERON:0018154 ! ligament of middle ear intersection_of: UBERON:0008846 ! skeletal ligament @@ -343767,6 +360490,8 @@ relationship: part_of UBERON:0001756 ! middle ear id: UBERON:0018157 name: lateral malleal ligament def: "A malleal ligament that extends from the bony margin of the notch of Rivinus to the neck of the malleus." [ISBN:9781604061550] +subset: human_subset +subset: mouse_subset is_a: UBERON:0018156 ! malleal ligament relationship: attaches_to UBERON:0005355 ! malleus neck @@ -343774,6 +360499,8 @@ relationship: attaches_to UBERON:0005355 ! malleus neck id: UBERON:0018158 name: superior malleal ligament def: "A malleal ligament that extends from the tempen tympani to the head of the malleus." [ISBN:9781604061550] +subset: human_subset +subset: mouse_subset is_a: UBERON:0018156 ! malleal ligament relationship: attaches_to UBERON:0005342 ! malleus head @@ -343781,12 +360508,16 @@ relationship: attaches_to UBERON:0005342 ! malleus head id: UBERON:0018159 name: anterior malleal ligament def: "A malleal ligament that extends from the anterior tympanic wall to the anterior process of the malleus." [ISBN:9781604061550] +subset: human_subset +subset: mouse_subset is_a: UBERON:0018156 ! malleal ligament relationship: attaches_to UBERON:0018160 ! anterior process of malleus [Term] id: UBERON:0018160 name: anterior process of malleus +subset: human_subset +subset: mouse_subset synonym: "folian process" EXACT [FMA:52771] synonym: "processus anterior (malleus)" EXACT [FMA:52771] synonym: "processus anterior mallei" EXACT OMO:0003011 [FMA:52771, FMA:TA] @@ -343802,6 +360533,8 @@ relationship: part_of UBERON:0001689 {source="FMA"} ! malleus bone id: UBERON:0018161 name: annular ligament of stapes def: "A ring of fibrous tissue that connects the base of the stapes to the oval window of the inner ear." [Wikipedia:Annular_ligament_of_stapes] +subset: human_subset +subset: mouse_subset synonym: "annular ligament" BROAD [Wikipedia:Annular_ligament_of_stapes] synonym: "annular ligament of base of stapes" EXACT [] synonym: "annular stapedial ligament" EXACT [Wikipedia:Annular_ligament_of_stapes] @@ -343822,6 +360555,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0018226 name: pulmonary part of lymphatic system def: "An organ system subdivision that is the part of the lymphoid system that includes the pulmonary lymphatic vessels." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "pulmonary lymphatic chain" EXACT [FMA:67999] synonym: "pulmonary lymphatic vasculature" RELATED [] @@ -343840,6 +360575,8 @@ id: UBERON:0018227 name: pulmonary lymphatic vessel def: "A lymphatic vessel that is part of a lung." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lymphatic vessel of lung" EXACT [] xref: FMA:234006 xref: SCTID:321862009 @@ -343855,6 +360592,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0018228 name: extrahepatic branch of portal vein +subset: human_subset +subset: mouse_subset synonym: "extrahepatic part of portal vein" EXACT [FMA:15418] xref: FMA:15418 xref: SCTID:273304006 @@ -343864,6 +360603,8 @@ is_a: UBERON:0002017 {source="MA"} ! portal vein id: UBERON:0018229 name: renin-angiotensin system def: "A system consisting of renin, angiotensin-converting enzyme, and angiotensin II. Renin, an enzyme produced in the kidney, acts on angiotensinogen, an alpha-2 globulin produced by the liver, forming angiotensin I. The converting enzyme contained in the lung acts on angiotensin I in the plasma converting it to angiotensin II, the most powerful directly pressor substance known. It causes contraction of the arteriolar smooth muscle and has other indirect actions mediated through the adrenal cortex." [MESH:G06.535.805] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "renin angiotensin aldosterone system" RELATED [MESH:G06.535.805] synonym: "renin angiotensin system" RELATED [MESH:G06.535.805] @@ -343880,6 +360621,8 @@ property_value: curator_notes "may be replaced by a GO process in future" xsd:st id: UBERON:0018230 name: femoral canal def: "The compartment of the femoral sheath that contains efferent lymphatic vessels and a lymph node embedded in a small amount of areolar tissue. It is conical in shape and is about 2 cm long. The femoral canal is bordered: Anteriorly by the inguinal ligament Posteriorly by the pectineal ligament Medially by the lacunar ligament Laterally by the femoral vein It contains the lymph nodes of Cloquet or Rosenmuller. It should not be confused with the nearby adductor canal." [Wikipedia:Femoral_canal] +subset: human_subset +subset: mouse_subset xref: FMA:22405 xref: SCTID:361912001 xref: Wikipedia:Femoral_canal @@ -343892,6 +360635,8 @@ id: UBERON:0018231 name: labyrinthine artery def: "A long slender branch of the anterior inferior cerebellar artery (85%-100% cases) or basilar artery (<15% cases), arises from near the middle of the artery; it accompanies the vestibulocochlear nerve through the internal acoustic meatus, and is distributed to the internal ear." [Wikipedia:Labyrinthine_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria auditiva interna" EXACT OMO:0003011 [Wikipedia:Labyrinthine_artery] synonym: "arteria labyrinthi" EXACT OMO:0003011 [Wikipedia:Labyrinthine_artery] synonym: "artery of inner ear" BROAD [FMA:50548] @@ -343915,6 +360660,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0018232 name: axillary sweat gland def: "A sweat gland that is part of a axilla." [OBOL:automatic] +subset: human_subset synonym: "axillary apocrine sweat gland" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "sweat gland of axilla" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000382 {source="ISBN:0123813611"} ! apocrine sweat gland @@ -343927,6 +360673,8 @@ relationship: part_of UBERON:0009472 ! axilla id: UBERON:0018233 name: gland of Zeis def: "Glands of Zeis are unilobar sebaceous glands located on the margin of the eyelid. The glands of Zeis service the eyelash. These glands produce an oily substance that is issued through the excretory ducts of the sebaceous lobule into the middle portion of the hair follicle." [Wikipedia:Gland_of_Zeis] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "ciliary sebaceous gland of eyelid" EXACT [FMA:59191] synonym: "gland of Zeis" EXACT [] @@ -343944,6 +360692,8 @@ id: UBERON:0018234 name: stroma of pancreas def: "A stroma that is part of a pancreas." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "pancreatic stroma" EXACT [FMA:63121] xref: FMA:63121 is_a: UBERON:0003891 ! stroma @@ -343956,6 +360706,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0018235 name: capsule of pancreas def: "A capsule that divides the parenchyma of the pancreas into lobes and lobules." [ISBN:0123813611] +subset: human_subset +subset: mouse_subset synonym: "pancreatic capsule" EXACT [] is_a: UBERON:0003893 ! capsule intersection_of: UBERON:0003893 ! capsule @@ -343967,6 +360719,8 @@ property_value: structure_notes "typically thin but can thicken with age" xsd:st id: UBERON:0018236 name: nucleus of Bischoff def: "A midline nucleus of the dorsal motor column found in animals with a prominent tail, including alligator, some birds, kangaroo, rat, shrew, great anteater." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "nucleus of Bishoff" EXACT [] is_a: UBERON:0018238 {source="ISBN:978-1-4615-0037-7"} ! dorsal column nucleus relationship: present_in_taxon NCBITaxon:10088 {notes="possible present in mouse", source="ISBN:0123813611"} ! Mus @@ -343975,6 +360729,8 @@ relationship: present_in_taxon NCBITaxon:10088 {notes="possible present in mouse id: UBERON:0018237 name: dorsal column-medial lemniscus pathway def: "A sensory tract originating in the spinal cord responsible for transmitting fine touch, vibration and conscious proprioceptive information from the body to the cerebral cortex. The components include the fasciculus gracilis and fasciculus cuneatus." [Wikipedia:Posterior_column-medial_lemniscus_pathway] +subset: human_subset +subset: mouse_subset synonym: "DCML" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "DCML pathway" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] synonym: "dorsal column" RELATED [Wikipedia:Posterior_column-medial_lemniscus_pathway] @@ -343997,6 +360753,8 @@ relationship: in_taxon NCBITaxon:32523 {source="ISBN:978-1-4615-0037-7"} ! Tetra id: UBERON:0018238 name: dorsal column nucleus def: "A nucleus that contain secondary neurons of the dorsal column-medial lemniscus pathway, which carries fine touch and proprioceptive information from the body to the brain. Examples: gracile nucleus, cuneat nucleus, nucleus of Bishoff." [ISBN:978-1-4615-0037-7] +subset: human_subset +subset: mouse_subset synonym: "dorsal column nuclei" RELATED OMO:0003004 [NeuroNames:1947] xref: MBA:720 xref: neuronames:1947 @@ -344011,6 +360769,8 @@ relationship: part_of UBERON:0018237 ! dorsal column-medial lemniscus pathway id: UBERON:0018239 name: rhombomere boundary def: "A boundary delimiting a rhombomere." [GO:0021654] +subset: human_subset +subset: mouse_subset synonym: "rhombomere junction" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction @@ -344023,6 +360783,7 @@ relationship: part_of UBERON:0007277 ! presumptive hindbrain id: UBERON:0018240 name: panniculus carnosus muscle def: "The skeletal muscle layer in the superficial fascia deep to the panniculus adiposus." [ISBN:0123813611, MP:0011157, Wikipedia:Panniculus_carnosus] +subset: mouse_subset synonym: "panniculus" BROAD [] synonym: "panniculus carnosus" EXACT [] synonym: "panniculus carnosus group" EXACT [MA:0003141] @@ -344046,6 +360807,8 @@ property_value: taxon_notes "In humans, the platysma has features of the pannicu id: UBERON:0018241 name: prime adult stage def: "A life cycle stage that starts at completion of development and growth of the sexually mature adult animal, and ends before senescence." [Bgee:AN, https://github.com/obophenotype/uberon/issues/496] +subset: human_subset +subset: mouse_subset synonym: "adulthood stage" RELATED [] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000113 ! post-juvenile adult stage @@ -344057,6 +360820,8 @@ property_value: dc:contributor https://github.com/fbastian id: UBERON:0018242 name: palatine bone horizontal plate def: "The part of the palatine bone that forms the posterior part (approximately one third) of the bony palate.(Stedmans)." [http://www.medilexicon.com/medicaldictionary.php?t=69540, MGI:cs] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "horizontal part of palatine bone" RELATED [Wikipedia:Horizontal_plate_of_palatine_bone] synonym: "horizontal plate" RELATED [Wikipedia:Horizontal_plate_of_palatine_bone] @@ -344078,6 +360843,8 @@ name: thymic artery def: "A vein that supplies blood to the thymus." [http://orcid.org/0000-0002-6601-2165] comment: The arteries supplying the thymus are derived from the internal thoracic artery, and from the superior thyroid artery and inferior thyroids.[WP] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "thymic arteries" RELATED OMO:0003004 [Wikipedia:Thymic_branches_of_internal_thoracic_artery] synonym: "thymic branch of internal thoracic artery" EXACT [FMA:10647] xref: FMA:10647 @@ -344095,6 +360862,8 @@ relationship: supplies UBERON:0002370 ! thymus id: UBERON:0018244 name: superficial cervical thymus def: "A cervical thymus that is located directly beneath the skin." [DOI:10.1071/ZO9730285] +subset: human_subset +subset: mouse_subset is_a: UBERON:0009114 ! cervical thymus relationship: present_in_taxon NCBITaxon:9263 ! Metatheria property_value: taxon_notes "apparently absent in polyprotodont species (Didelphidae, Dasyuridae, Thylacinidae, Notoryctidae, Peramelidae, and Caenolestidae); paired lobes found in diprotodont (Burramyidae, Petauridae, Phalangeridae, Phascolarctidae, and Tarsipedidae)[DOI:10.1071/ZO9730285]" xsd:string @@ -344103,12 +360872,16 @@ property_value: taxon_notes "apparently absent in polyprotodont species (Didelph id: UBERON:0018245 name: deep cervical thymus def: "A cervical thymus that is located deep in the ventral cervical region, superficial to hyoid, sternomastoid, and depressor neck muscles." [DOI:10.1071/ZO9730285] +subset: human_subset +subset: mouse_subset is_a: UBERON:0009114 ! cervical thymus [Term] id: UBERON:0018246 name: thyroid vein def: "A vein that drains a thyroid gland." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:18648 xref: SCTID:303420005 is_a: UBERON:0001638 ! vein @@ -344121,6 +360894,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0018247 name: cervical thymic artery def: "An artery that supplies a cervical thymus." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0018243 ! thymic artery intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0009114 ! cervical thymus @@ -344129,18 +360904,24 @@ relationship: supplies UBERON:0009114 ! cervical thymus [Term] id: UBERON:0018248 name: inferior superficial cervical thymic artery +subset: human_subset +subset: mouse_subset is_a: UBERON:0018247 ! cervical thymic artery relationship: supplies UBERON:0018244 ! superficial cervical thymus [Term] id: UBERON:0018249 name: superior superficial cervical thymic artery +subset: human_subset +subset: mouse_subset is_a: UBERON:0018247 ! cervical thymic artery relationship: supplies UBERON:0018244 ! superficial cervical thymus [Term] id: UBERON:0018250 name: middle thyroid artery +subset: human_subset +subset: mouse_subset is_a: UBERON:0003847 ! thyroid artery is_a: UBERON:0035398 ! branch of external carotid artery relationship: connecting_branch_of UBERON:0001070 {source="PMC1167197"} ! external carotid artery @@ -344150,6 +360931,8 @@ property_value: taxon_notes "In Cavio cobaya, arises from the external carotid o id: UBERON:0018251 name: meningeal vein def: "One of the veins draining a meninix." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: FMA:50839 xref: SCTID:84842006 is_a: UBERON:0001638 ! vein @@ -344164,6 +360947,8 @@ id: UBERON:0018252 name: internal pudendal vein def: "Accompanying vein of internal pudendal artery." [Wikipedia:Internal_pudendal_veins] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "internal pudic vein" RELATED [Wikipedia:Internal_pudendal_veins] synonym: "vena pudenda interna" EXACT OMO:0003011 [Wikipedia:Internal_pudendal_veins] xref: FMA:18917 @@ -344182,6 +360967,8 @@ id: UBERON:0018253 name: external pudendal vein def: "One of the veins of the pelvis which drain into the great saphenous vein." [Wikipedia:External_pudendal_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "external pudic vein" RELATED [Wikipedia:External_pudendal_veins] synonym: "vena pudenda externa" EXACT OMO:0003011 [Wikipedia:External_pudendal_veins] xref: FMA:0329308 @@ -344197,6 +360984,8 @@ id: UBERON:0018254 name: skeletal musculature subset: grouping_class subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EHDAA2:0001842 xref: EMAPA:35578 is_a: UBERON:0000061 ! anatomical structure @@ -344210,6 +360999,8 @@ id: UBERON:0018255 name: jejunal artery def: "A branch of the superior mesenteric artery that supplies the jejunum." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Jejunal_veins] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "jejunal branch of superior mesenteric artery" RELATED [FMA:14808] xref: FMA:14808 xref: SCTID:265391008 @@ -344228,6 +361019,8 @@ id: UBERON:0018256 name: lacrimal vein def: "A vein that drains a lacrimal gland." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:51779 xref: SCTID:149582008 is_a: UBERON:0001638 ! vein @@ -344242,6 +361035,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0018257 name: submucosa of digestive tract def: "Any portion of submucosa that lines the digestive tract." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000009 ! submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001555 ! digestive tract @@ -344251,6 +361046,8 @@ relationship: part_of UBERON:0001555 ! digestive tract id: UBERON:0018260 name: layer of muscle tissue def: "Any organ component layer that consists of muscle tissue." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: FMA:45634 xref: NCIT:C75444 xref: UMLS:C0225358 @@ -344264,6 +361061,8 @@ property_value: external_ontology_notes "NCITA class may refer to smooth muscle id: UBERON:0018261 name: muscular coat of digestive tract def: "A muscular coat that is part of a digestive tract." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "muscular layer of digestive tract" RELATED [] synonym: "muscularis externa of digestive tract" RELATED [] synonym: "tunica externa of digestive tract" RELATED [] @@ -344278,6 +361077,8 @@ property_value: function_notes "responsible for gut movement, such as peristalsi [Term] id: UBERON:0018262 name: dorsal zone of medial entorhinal cortex +subset: human_subset +subset: mouse_subset synonym: "dorsal zone of the medial part of the entorhinal area" RELATED [NeuroNames:3141] synonym: "entorhinal area, medial part, dorsal zone" EXACT [ABA:ENTm] synonym: "entorhinal area, medial part, dorsal zone" RELATED [NeuroNames:3141] @@ -344291,6 +361092,8 @@ relationship: part_of UBERON:0007224 ! medial entorhinal cortex [Term] id: UBERON:0018263 name: ventral zone of medial entorhinal cortex +subset: human_subset +subset: mouse_subset synonym: "entorhinal area, medial part, ventral zone" EXACT [ABA:ENTmv] synonym: "entorhinal area, medial part, ventral zone" RELATED [NeuroNames:3142] synonym: "entorhinal area, medial part, ventral zone [Haug]" RELATED [NeuroNames:3142] @@ -344304,6 +361107,8 @@ relationship: part_of UBERON:0007224 ! medial entorhinal cortex id: UBERON:0018264 name: dorsal lateral ganglionic eminence def: "The dorsal region of the lateral ganglionic eminence. The cells in this area give rise to embryonic interneuron precursors that will migrate tangentially to the olfactory bulb." [GO:0021851] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004025 ! lateral ganglionic eminence @@ -344311,6 +361116,8 @@ relationship: part_of UBERON:0004025 ! lateral ganglionic eminence id: UBERON:0018265 name: anterior root of zygomatic arch def: "The anterior or rostral end of the zygomatic arch, which includes the temporal process of the zygomatic bone, but also including some of the body of the zygomatic bone. It may also include the zygomatico-temporal suture and the most rostral portion of the zygomatic process of the temporal bone." [MFMO:0000109] +subset: human_subset +subset: mouse_subset xref: MFMO:0000109 is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure @@ -344321,6 +361128,8 @@ property_value: editor_note "requires definition see https://github.com/obopheno id: UBERON:0018266 name: third phalanx def: "The third phalangeal bone in a digit ray." [PHENOSCAPE:nizar] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003221 ! phalanx property_value: editor_note "to be discussed. Should this class be used for the distal phalanges on a 3-phalanx ray (e.g. human finger 2?)" xsd:string @@ -344328,6 +361137,8 @@ property_value: editor_note "to be discussed. Should this class be used for the id: UBERON:0018267 name: atlantal spinal nerve foramen def: "Foramen housing the root of the spinal nerve seen in the neural arch of the first vertebrae (atlas). (see Edwards 1976)." [PHENOSCAPE:nizar] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005744 ! bone foramen is_a: UBERON:4200105 ! nerve foramen relationship: part_of UBERON:0005814 ! arch of atlas @@ -344337,6 +361148,8 @@ property_value: taxon_notes "In extant taxa this is restricted to some members o id: UBERON:0018268 name: type 1 adrenal tissue def: "Adrenal tissue dispersed in clusters, found in periphery and center of adrenal gland in turtles (Yadav, 2008)." [PHENOSCAPE:nizar] +subset: human_subset +subset: mouse_subset synonym: "type 1 tissue" BROAD [PHENOSCAPE:nizar] is_a: UBERON:0018303 ! adrenal tissue @@ -344344,6 +361157,8 @@ is_a: UBERON:0018303 ! adrenal tissue id: UBERON:0018269 name: type 2 adrenal tissue def: "Adrenal tissue aggregated in a dorsal layer covering internal cords, found in lepidosaur adrenal glands. Islets of adrenal tissue found on ventral surface of gland (barely present in squamates). See Yadav, 2008." [PHENOSCAPE:nizar] +subset: human_subset +subset: mouse_subset synonym: "type 2 tissue" BROAD [PHENOSCAPE:nizar] is_a: UBERON:0018303 ! adrenal tissue @@ -344351,6 +361166,8 @@ is_a: UBERON:0018303 ! adrenal tissue id: UBERON:0018270 name: type 3 adrenal tissue def: "Adrenal tissue found in archosaurs - tissue arranged in bands, alternating with interrenal cords (Yadav, 2008)." [PHENOSCAPE:nizar] +subset: human_subset +subset: mouse_subset synonym: "type 3 tissue" BROAD [PHENOSCAPE:nizar] is_a: UBERON:0018303 ! adrenal tissue @@ -344358,6 +361175,8 @@ is_a: UBERON:0018303 ! adrenal tissue id: UBERON:0018271 name: type 4 adrenal tissue def: "In mammals, adrenal tissue has a cortex and medulla creating a composite adrenal gland (Kardong 2012)." [PHENOSCAPE:nizar] +subset: human_subset +subset: mouse_subset synonym: "type 4 tissue" BROAD [PHENOSCAPE:nizar] is_a: UBERON:0018303 ! adrenal tissue @@ -344365,6 +361184,8 @@ is_a: UBERON:0018303 ! adrenal tissue id: UBERON:0018272 name: apex of paracone def: "The highest elevation of the paracone on a molariform tooth." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003678 ! tooth apex relationship: part_of UBERON:0018288 ! paracone @@ -344372,6 +361193,8 @@ relationship: part_of UBERON:0018288 ! paracone id: UBERON:0018273 name: caniniform region def: "The anterior region of the maxillary tooth row, if that tooth row contains teeth that are substantially over the premaxillary teeth (see Laurin and Reisz 1995)." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:2001978 ! maxillary tooth row @@ -344379,6 +361202,7 @@ relationship: part_of UBERON:2001978 ! maxillary tooth row id: UBERON:0018274 name: postcingulum of deciduous premolar 5 def: "A postcingulum found on deciduous premolar 5." [PHENOSCAPE:alex] +subset: human_subset synonym: "dP5 postcingulum" EXACT [] is_a: UBERON:0018290 ! postcingulum intersection_of: UBERON:0018290 ! postcingulum @@ -344389,6 +361213,7 @@ relationship: part_of UBERON:0018375 ! deciduous premolar 5 id: UBERON:0018275 name: posthypocrista of deciduous premolar 5 def: "A posthypocrista found on deciduous premolar 5." [PHENOSCAPE:alex] +subset: human_subset synonym: "dP5 posthypocrista" EXACT [] is_a: UBERON:0018292 ! posthypocrista intersection_of: UBERON:0018292 ! posthypocrista @@ -344432,6 +361257,8 @@ property_value: taxon_notes "found in Archosaurs and monotreames" xsd:string id: UBERON:0018279 name: hypoconid def: "The labial most of three cusps on the talonoid (posterior) end of lower molariform teeth. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006844 ! cusp of tooth relationship: part_of UBERON:0013164 ! molariform tooth @@ -344445,6 +361272,7 @@ replaced_by: UBERON:0016929 id: UBERON:0018281 name: lower deciduous premolar 5 def: "Fifth premolar (counting anteroposteriorly ) in the lower jaw." [PHENOSCAPE:alex] +subset: human_subset synonym: "dp5" RELATED OMO:0003000 [] is_a: UBERON:0017272 ! lower primary premolar tooth is_a: UBERON:0018375 ! deciduous premolar 5 @@ -344456,6 +361284,8 @@ relationship: part_of UBERON:0001710 ! lower jaw region id: UBERON:0018282 name: lower molar 3 def: "Third molar (counting anteroposteriorly) in the lower jaw." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset synonym: "lower wisdom tooth" RELATED [] synonym: "wisdom tooth" RELATED [PHENOSCAPE:alex] xref: Wikipedia:Wisdom_tooth @@ -344469,6 +361299,8 @@ relationship: part_of UBERON:0001710 ! lower jaw region id: UBERON:0018283 name: lower pharyngobranchial toothplate def: "Pharyngeal toothplate of the lower jaw region; typically associated with ceratobranchial 5 element." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset synonym: "lower pharyngeal toothplate" EXACT [PHENOSCAPE:alex] is_a: UBERON:2001647 ! pharyngeal tooth plate relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton @@ -344478,6 +361310,7 @@ property_value: editor_note "need to add relationship: UBERON:'pharyngeal tooth id: UBERON:0018284 name: lower premolar 1 def: "First premolar (counting anteroposteriorly ) in the lower jaw." [PHENOSCAPE:alex] +subset: human_subset is_a: UBERON:0016943 ! lower premolar tooth is_a: UBERON:0018294 ! premolar 1 intersection_of: UBERON:0018294 ! premolar 1 @@ -344488,6 +361321,7 @@ relationship: part_of UBERON:0001710 ! lower jaw region id: UBERON:0018285 name: lower premolar 2 def: "Second premolar (counting anteroposteriorly ) in the lower jaw." [PHENOSCAPE:alex] +subset: human_subset is_a: UBERON:0016943 ! lower premolar tooth is_a: UBERON:0018640 ! premolar 2 intersection_of: UBERON:0018640 ! premolar 2 @@ -344498,6 +361332,8 @@ relationship: part_of UBERON:0001710 ! lower jaw region id: UBERON:0018286 name: molar 1 posteroloph def: "Posteroloph found on the first molar tooth." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset synonym: "M1 posteroloph" EXACT [1] is_a: UBERON:0018291 ! posteroloph intersection_of: UBERON:0018291 ! posteroloph @@ -344508,6 +361344,7 @@ relationship: part_of UBERON:0018376 ! molar tooth 1 id: UBERON:0018287 name: premolar 1 hypoconoid def: "Hypoconid found on the first premolar tooth." [PHENOSCAPE:alex] +subset: human_subset synonym: "p1 hypoconoid" EXACT [] is_a: UBERON:0018279 ! hypoconid intersection_of: UBERON:0018279 ! hypoconid @@ -344518,6 +361355,8 @@ relationship: part_of UBERON:0018294 ! premolar 1 id: UBERON:0018288 name: paracone def: "The anterior cusp along the labial margin seen in the molar or premolar teeth of mammals. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006844 ! cusp of tooth relationship: in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0013164 ! molariform tooth @@ -344526,6 +361365,8 @@ relationship: part_of UBERON:0013164 ! molariform tooth id: UBERON:0018289 name: paracristid def: "A crest running along the labial margin of molarifomr teeth of mammals. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0016930 ! ridge of tooth relationship: in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0013164 ! molariform tooth @@ -344534,6 +361375,8 @@ relationship: part_of UBERON:0013164 ! molariform tooth id: UBERON:0018290 name: postcingulum def: "A shelf like ridge on the posterior (distal) outside edge of the upper molariform teeth. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0016930 ! ridge of tooth relationship: in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0013164 ! molariform tooth @@ -344542,6 +361385,8 @@ relationship: part_of UBERON:0013164 ! molariform tooth id: UBERON:0018291 name: posteroloph def: "A shelf like ridge on the outside of the upper molariform teeth. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0016930 ! ridge of tooth relationship: in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0013164 ! molariform tooth @@ -344550,6 +361395,8 @@ relationship: part_of UBERON:0013164 ! molariform tooth id: UBERON:0018292 name: posthypocrista def: "A crest on the hypoconid of molariform teeth. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0016930 ! ridge of tooth relationship: part_of UBERON:0013164 ! molariform tooth @@ -344557,6 +361404,8 @@ relationship: part_of UBERON:0013164 ! molariform tooth id: UBERON:0018293 name: precingulum def: "A shelf like ridge on the proximal (mesial) outside edge of the upper molariform teeth. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0016930 ! ridge of tooth relationship: in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0013164 ! molariform tooth @@ -344565,6 +361414,7 @@ relationship: part_of UBERON:0013164 ! molariform tooth id: UBERON:0018294 name: premolar 1 def: "First premolar (counting anteroposteriorly) in the jaw." [PHENOSCAPE:alex] +subset: human_subset synonym: "first premolar tooth" EXACT [] xref: SCTID:422368002 is_a: UBERON:0007120 ! premolar tooth @@ -344573,6 +361423,8 @@ is_a: UBERON:0007120 ! premolar tooth id: UBERON:0018295 name: preprotocrista def: "An enamel ridge joining the protocone and the paracone on the occlusal surface of a maxillary molar." [http://www.oxfordreference.com/view/10.1093/oi/authority.20110803100343456, PHENOSCAPE:curators] +subset: human_subset +subset: mouse_subset is_a: UBERON:0016930 ! ridge of tooth relationship: in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0013164 ! molariform tooth @@ -344581,6 +361433,8 @@ relationship: part_of UBERON:0013164 ! molariform tooth id: UBERON:0018296 name: replacement tooth def: "Tooth (often obscured from view) in a 'waiting' position that will replace an existing tooth (i.e. a tooth that is well visible in the jaw)." [PHENOSCAPE:Nizar] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001091 ! calcareous tooth property_value: editor_note "additional feedback required. Should this be classified as a primary tooth?" xsd:string @@ -344588,6 +361442,8 @@ property_value: editor_note "additional feedback required. Should this be classi id: UBERON:0018297 name: resorption pit def: "A pit formed in an existing functional tooth, causing resorption of the surrounding dentine and periodontal tissues. (modified from LeBlanc and Reisz 2013, see figures 8, 10 for more details)." [PHENOSCAPE:curators] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001708 ! jaw skeleton @@ -344595,6 +361451,8 @@ relationship: part_of UBERON:0001708 ! jaw skeleton id: UBERON:0018298 name: stylocone def: "Cusp found on a platform that is buccaal and mesial to the meta and paracones. Modified from Kermack 1967. Molar evolution in Mesozoic mammals." [PHENOSCAPE:Alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006844 ! cusp of tooth relationship: part_of UBERON:0013164 ! molariform tooth @@ -344602,6 +361460,8 @@ relationship: part_of UBERON:0013164 ! molariform tooth id: UBERON:0018299 name: mandibular symphyseal tooth def: "Tooth of the lower jaw that is adjacent to the mandibular symphysis." [PHENOSCAPE:curators] +subset: human_subset +subset: mouse_subset synonym: "lower jaw symphyseal tooth" EXACT [] synonym: "symphyseal tooth" BROAD [] is_a: UBERON:0003268 ! tooth of lower jaw @@ -344616,6 +361476,7 @@ relationship: part_of UBERON:0018542 ! mandibular symphyseal region id: UBERON:0018300 name: upper canine 1 def: "First canine (counting anteroposteriorly) in the upper jaw." [PHENOSCAPE:Alex] +subset: human_subset synonym: "UC1" EXACT OMO:0003000 [] synonym: "upper canine UC1" EXACT [] is_a: UBERON:0018621 ! upper canine tooth @@ -344625,6 +361486,7 @@ relationship: part_of UBERON:0001709 ! upper jaw region id: UBERON:0018301 name: upper deciduous premolar 5 def: "Fifth premolar (counting anteroposteriorly ) in the upper jaw." [PHENOSCAPE:Alex] +subset: human_subset synonym: "dP5" RELATED OMO:0003000 [] is_a: UBERON:0017271 ! upper primary premolar tooth is_a: UBERON:0018375 ! deciduous premolar 5 @@ -344636,6 +361498,8 @@ relationship: part_of UBERON:0001709 ! upper jaw region id: UBERON:0018302 name: upper molar 1 def: "First molar (counting anteroposteriorly) in the upper jaw." [PHENOSCAPE:Alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003666 ! upper jaw molar is_a: UBERON:0018376 ! molar tooth 1 intersection_of: UBERON:0018376 ! molar tooth 1 @@ -344646,6 +361510,8 @@ relationship: part_of UBERON:0001709 ! upper jaw region id: UBERON:0018303 name: adrenal tissue def: "Tissue that is part of some adrenal gland." [PHENOSCAPE:Alex] +subset: human_subset +subset: mouse_subset synonym: "adrenal gland tissue" EXACT [ncithesaurus:Adrenal_Gland_Tissue] xref: NCIT:C32051 is_a: UBERON:0000479 ! tissue @@ -344660,6 +361526,8 @@ property_value: editor_note "TODO - describe typology of adrenal gland tissue us id: UBERON:0018304 name: post-axial region of pectoral appendage def: "Anatomical region lying to the posteiror or ventral side of the metapterygial axis." [PHENOSCAPE:Nizar] +subset: human_subset +subset: mouse_subset synonym: "post-axial region" BROAD [] is_a: UBERON:0010538 ! paired limb/fin segment relationship: part_of UBERON:0004710 ! pectoral appendage @@ -344668,6 +361536,8 @@ relationship: part_of UBERON:0004710 ! pectoral appendage id: UBERON:0018305 name: bicipital surface def: "Region of the humerus associated with the biceps attachment areas." [PHENOSCAPE:Nizar] +subset: human_subset +subset: mouse_subset is_a: UBERON:0036215 ! anatomical surface region relationship: part_of UBERON:0000976 ! humerus @@ -344684,6 +361554,8 @@ replaced_by: UBERON:0010188 id: UBERON:0018307 name: keel def: "Ridge shaped projection, similar to the keel of a boat." [PHENOSCAPE:Nizar] +subset: human_subset +subset: mouse_subset subset: upper_level is_a: UBERON:0004529 ! anatomical projection property_value: editor_note "Candidate for obsoletion" xsd:string @@ -344692,6 +361564,8 @@ property_value: editor_note "Candidate for obsoletion" xsd:string id: UBERON:0018308 name: caudal melanophore spot def: "Distinct colored area on the caudal region of an organism, similar in shape to a spot, i.e. circular." [PHENOSCAPE:Nizar] +subset: human_subset +subset: mouse_subset synonym: "caudal spot" BROAD [] is_a: UBERON:2002283 ! melanophore spot @@ -344744,6 +361618,8 @@ relationship: part_of UBERON:0001567 ! cheek id: UBERON:0018314 name: choanal groove def: "Grooves on the palatine bone which denote the passage of the choana or internal naris." [PHENOSCAPE:Alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006846 ! surface groove relationship: part_of UBERON:0001682 ! palatine bone property_value: taxon_notes "found primarily in lepidosaurs" xsd:string @@ -344760,6 +361636,8 @@ property_value: editor_note "currently created as a subtype of clasper, but it's id: UBERON:0018316 name: cuboid facet of calcaneum def: "Facet on the anterior surface of the calcaneus (as called calcaneum) for the articulation of the cuboid bone." [PHENOSCAPE:Alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet relationship: part_of UBERON:0001450 ! calcaneus @@ -344777,6 +361655,8 @@ relationship: part_of UBERON:0001137 ! dorsum id: UBERON:0018318 name: entocarotid fossa def: "A depression on the lateral surface of the braincase posterior to the Vidian canal (Conrad 2008)." [PHENOSCAPE:Alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008789 ! cranial fossa relationship: part_of UBERON:0004746 ! prootic bone @@ -344784,6 +361664,8 @@ relationship: part_of UBERON:0004746 ! prootic bone id: UBERON:0018319 name: extramural oviduct def: "Section of the oviduct external to the uterine wall." [PHENOSCAPE:Alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000993 ! oviduct @@ -344792,6 +361674,8 @@ relationship: part_of UBERON:0000993 ! oviduct id: UBERON:0018320 name: flexor sesamoid def: "A sesamoid bone located near or in the flexor musculature of a joint." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001479 ! sesamoid bone relationship: adjacent_to UBERON:0000366 ! flexor muscle @@ -344799,6 +361683,8 @@ relationship: adjacent_to UBERON:0000366 ! flexor muscle id: UBERON:0018321 name: foramen for glossopharyngeal nerve def: "Foramen that allows the passge of the glossopharyngeal nerve (cranial nerve IX)." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: conduit_for UBERON:0001649 ! glossopharyngeal nerve @@ -344809,6 +361695,7 @@ relationship: part_of UBERON:0003128 ! cranium id: UBERON:0018322 name: fourth phalanx def: "Fourth most proximal phalanx in manual or pedal digits." [PHENOSCAPE:alex] +subset: mouse_subset is_a: UBERON:0003221 ! phalanx relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -344816,6 +361703,8 @@ relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0018323 name: hyoid articular area def: "Area on the otic capsule for the articulation of the hyoid." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004905 ! articulation relationship: part_of UBERON:0004637 ! otic capsule @@ -344841,6 +361730,8 @@ relationship: part_of UBERON:4000167 ! caudal fin skeleton id: UBERON:0018326 name: ilioischiadic foramen def: "Situated just caudal to the acetabulum, the foramen is bound dorsally by the illium and ventrally by the ischium. The foramen transmitts the ischiadic nerves and vessels (Baumel et al. 1993)." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen intersection_of: UBERON:0005744 ! bone foramen @@ -344860,6 +361751,8 @@ replaced_by: UBERON:0017249 id: UBERON:0018328 name: incisura fossa def: "The condyloid fossa on the cranial aspect of the Atlas my be perforated (foramen fossa) or have an open dorsal notch (Incisura fossa) in which the apex of the dens rides. (From Baumel et al. 1993)." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004704 ! bone fossa is_a: UBERON:0010276 ! space in vertebral column relationship: part_of UBERON:0001092 ! vertebral bone 1 @@ -344868,6 +361761,8 @@ relationship: part_of UBERON:0001092 ! vertebral bone 1 id: UBERON:0018329 name: interpterygoid region def: "The region on the palate corresponding to the location of the pterygoid bone, if present and between the palatine bones and the parasphenoid if not." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0012072 ! palatal part of dermatocranium property_value: editor_note "propose changing palate bone to palate bone series[PHENOSCAPE:ad]" xsd:string @@ -344876,6 +361771,8 @@ property_value: editor_note "propose changing palate bone to palate bone series[ id: UBERON:0018330 name: interpterygoid vacuity def: "Open space between on the palate between the pteryogoid bone and the parasphenoid." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0012072 ! palatal part of dermatocranium @@ -344883,6 +361780,8 @@ relationship: part_of UBERON:0012072 ! palatal part of dermatocranium id: UBERON:0018331 name: intraramal joint def: "A joint in the lower jaw that enhances kinesis and for swallowing prey. Allows enhanced mobility and intraramal bending to increase gape." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0003278 ! skeleton of lower jaw @@ -344895,8 +361794,8 @@ synonym: "angulus tomialis" EXACT [DOI:10.1371/journal.pone.0026350] is_a: UBERON:0005913 ! zone of bone organ relationship: connects UBERON:0002397 ! maxilla relationship: connects UBERON:0006597 ! quadrate bone -relationship: derived_from_ancestral_fusion_of UBERON:0001683 ! jugal bone -relationship: derived_from_ancestral_fusion_of UBERON:0011267 ! quadratojugal bone +relationship: has_fused_element UBERON:0001683 ! jugal bone +relationship: has_fused_element UBERON:0011267 ! quadratojugal bone [Term] id: UBERON:0018333 @@ -344921,6 +361820,8 @@ relationship: part_of UBERON:0006597 ! quadrate bone id: UBERON:0018335 name: lateral dorsal aorta canal def: "One of the branches of the dorsal aorta, after it enters the aortic canal." [PHENOSCAPE:Nizar] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003513 ! trunk blood vessel is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0005805 ! dorsal aorta @@ -344929,6 +361830,8 @@ relationship: part_of UBERON:0005805 ! dorsal aorta id: UBERON:0018336 name: maxillary shank def: "The triangular shaped posterior fold at the angle of the mouth. From Chakrabarty 2006." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002397 ! maxilla @@ -344945,6 +361848,8 @@ relationship: part_of UBERON:0006597 ! quadrate bone id: UBERON:0018338 name: medial cotyla def: "The medialmost of the cotyla of the lower jaw, for articulation with the cranium." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:4200050 ! cotyla relationship: part_of UBERON:0003278 ! skeleton of lower jaw property_value: editor_note "According to Uberon mandible only denotes the dentary of mammals. THis is incorrect[PHENOSCAPE:ad]" xsd:string @@ -344953,6 +361858,8 @@ property_value: editor_note "According to Uberon mandible only denotes the denta id: UBERON:0018339 name: metotic fissure def: "An embryonic fissure between the otic capsule and the arches which develop into the occipital bones. The fissure may persist into adulthood. It is also referred to as the 'lateral otic fissure' The metotic fissure opens into the vestibular fontanelle, if the fontanelle is present. (Johanson et al. (2003)). Otherwise it opens to the metotic foramen." [http://palaeos.com/vertebrates/glossary/glossaryM.html, PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006846 ! surface groove relationship: part_of UBERON:0004637 ! otic capsule @@ -344960,6 +361867,8 @@ relationship: part_of UBERON:0004637 ! otic capsule id: UBERON:0018340 name: midbody melanophore spot def: "Distinct colored area on the midbody region of an organism, similar in shape to a spot, i.e. circular." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset synonym: "midbody spot" EXACT [] is_a: UBERON:2002283 ! melanophore spot @@ -344967,6 +361876,8 @@ is_a: UBERON:2002283 ! melanophore spot id: UBERON:0018341 name: nasal process of premaxilla def: "A bony projection of the premaxilla that extends cadually and separates the nasal bones." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla @@ -344976,6 +361887,8 @@ property_value: taxon_notes "Most often documented in reptiles." xsd:string id: UBERON:0018342 name: nuchal hump def: "Dorsal swelling on the head. Found in cichlid fish. Often only in males and during breeding season, but not exclusively so." [PHENOSCAPE:Wasila] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0000033 ! head @@ -344983,6 +361896,8 @@ relationship: part_of UBERON:0000033 ! head id: UBERON:0018343 name: oviduct mucosal fold def: "The wall of the fallopian tube includes an elaborately folded mucosa (endosalpinx) surrounded by a muscularis (myosalpinx). The mucosa is lined by a ciliated columnar epithelium with secretory cells, and is folded out into the lumen so that an ovum in the lumen will always be close to the cilia for transport to the uterus." [http://www.siumed.edu/~dking2/erg/oviduct.htm, PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset synonym: "endosalpinx" EXACT [PHENOSCAPE:alex] synonym: "mucosal fold of fallopian tube" RELATED [FMA:18537] synonym: "mucosal fold of oviduct" RELATED [FMA:18537] @@ -344994,6 +361909,8 @@ relationship: part_of UBERON:0000993 ! oviduct id: UBERON:0018344 name: parastyle def: "An anterior cusp on the stylar shelf of the tooth." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006844 ! cusp of tooth relationship: part_of UBERON:0018345 ! stylar shelf @@ -345001,6 +361918,8 @@ relationship: part_of UBERON:0018345 ! stylar shelf id: UBERON:0018345 name: stylar shelf def: "The stylar shelf is an an expansion of the cingulum; it often bears small cusps (each with its own name...)." [http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure, PHENOSCAPE:curators] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0013164 ! molariform tooth @@ -345009,12 +361928,16 @@ relationship: part_of UBERON:0013164 ! molariform tooth id: UBERON:0018346 name: parietal notch def: "A pronounced notch or cavity in the lateral face of the parietal." [PHENOSCAPE:alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0000210 ! tetrapod parietal bone [Term] id: UBERON:0018347 name: pars canalicularis of petrosal +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0018348 ! petrosal bone @@ -345022,6 +361945,8 @@ relationship: part_of UBERON:0018348 ! petrosal bone [Term] id: UBERON:0018348 name: petrosal bone +subset: human_subset +subset: mouse_subset is_a: UBERON:0004766 ! cranial bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0003128 ! cranium @@ -345031,6 +361956,8 @@ property_value: curator_notes "distinct from UBERON:0001694 petrous part of temp id: UBERON:0018349 name: pharyngeal apophysis def: "Ventral process on the neurocranium for the articulation of upper pharyngeal bones. It is variably composed of the parasphenoid, basioccipital, and prootic depending on the species. From: Greenwood, PH (1978). A review of the pharyngeal hypophysis and its significance in the classification of African cichlid fishes. Bull. Br. Mus. Nat. Hist. (Zool.) 33: 297-323." [PHENOSCAPE:Wasila] +subset: human_subset +subset: mouse_subset synonym: "neurocranium apophysis" EXACT [PHENOSCAPE:Wasila] is_a: UBERON:0006770 ! apophysis relationship: part_of UBERON:0001703 ! neurocranium @@ -345039,6 +361966,8 @@ relationship: part_of UBERON:0001703 ! neurocranium id: UBERON:0018351 name: precerebral fontanelle def: "The lack of chondrification of the anterior wall of the cranial cavity in front of the pineal foramen.....(Hanken and Hall)." [PHENOSCAPE:Alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000051 ! braincase and otic capsule opening [Term] @@ -345065,6 +361994,8 @@ relationship: part_of UBERON:0011171 ! joint connecting upper and lower jaws id: UBERON:0018354 name: recessus vena jugularis def: "As defined here, this refers to a depression on the lateral surface of the braincase posterior to the Vidian canal as opposed to the carotid fossa...(Conrad 2008)." [PHENOSCAPE:Alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton @@ -345079,11 +362010,15 @@ relationship: part_of UBERON:0005094 ! beak id: UBERON:0018356 name: rostral entotympanic element def: "An entotympanic that arises in forward part of tympanic floor. It may be intimately fused witA cartilage of tube during development(MacPhee (1981: 62)) in contrast to a caudal entotympanic arising in the rear tympanic floor. From O'Leary et al. 2012." [PHENOSCAPE:Alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0013190 ! entotympanic bone [Term] id: UBERON:0018357 name: sensory pore +subset: human_subset +subset: mouse_subset synonym: "sensory canal pore" EXACT [PHENOSCAPE:Wasila] is_a: UBERON:0008915 ! pore intersection_of: UBERON:0008915 ! pore @@ -345095,6 +362030,8 @@ relationship: part_of UBERON:0001032 ! sensory system id: UBERON:0018358 name: spina externa def: "A median bony point projecting from the anterior and ventral margin of the sternum of a bird. From http://www.merriam-webster.com/dictionary/spina%20externa." [PHENOSCAPE:Alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0000975 ! sternum @@ -345102,6 +362039,8 @@ relationship: part_of UBERON:0000975 ! sternum id: UBERON:0018359 name: subolfactory process def: "The ventral portion of the frontals which forms part of the lateral wall of the braincase. Modified from Lee and Caldwell 1998." [PHENOSCAPE:Alex] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0000209 ! tetrapod frontal bone @@ -345111,6 +362050,8 @@ relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton id: UBERON:0018360 name: suborbital foramen def: "Foramen located below the orbit and forming a passageway for nerves (eg fifth cranial nerve)." [PHENOSCAPE:Nizar] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005744 ! bone foramen relationship: conduit_for UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0003128 ! cranium @@ -345130,6 +362071,8 @@ id: UBERON:0018362 name: supracondylar tubercle def: "Anatomical projection on the distal region of the femur or humerus and close to the condyles." [PHENOSCAPE:Nizar] comment: found on femur or humerus +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0017163 ! skin bony tubercle relationship: part_of UBERON:0011583 ! stylopodial skeleton @@ -345145,6 +362088,8 @@ replaced_by: UBERON:3000778 id: UBERON:0018364 name: suprameatal foramen def: "Foramen in the temporal bone, adjacent to the base of the zygomatic process." [PHENOSCAPE:Nizar] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0001678 ! temporal bone @@ -345152,6 +362097,8 @@ relationship: part_of UBERON:0001678 ! temporal bone id: UBERON:0018365 name: supratemporal process def: "Process of the parietal." [PHENOSCAPE:Nizar] +subset: human_subset +subset: mouse_subset is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000210 ! tetrapod parietal bone @@ -345159,12 +362106,16 @@ relationship: part_of UBERON:0000210 ! tetrapod parietal bone id: UBERON:0018366 name: supratendinal bridge def: "Ossified bridge over a tendon; Particularly, the bridge over the extensor canal at the distal end of the tibiotarsus of certain birds. The presence of the bridge and the position of the canal opening relative to the condyles may have phylogenetic significance. Ericson (1997). http://palaeos.com/vertebrates/glossary/glossarySq.html." [PHENOSCAPE:Nizar] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001474 ! bone element [Term] id: UBERON:0018367 name: processus ventralis of thoracic vertebra def: "The crest is present on the ventral side of the bodies of the thoracic vertebra (modified from Baumel et al. 1993)." [PHENOSCAPE:Alex] +subset: human_subset +subset: mouse_subset synonym: "hypapophysis, crista ventralis corporis, crista ventralis, processus latus" EXACT [PHENOSCAPE:Alex] synonym: "processus ventralis" EXACT [] xref: NOID:1 @@ -345176,6 +362127,8 @@ property_value: taxon_notes "found in some birds" xsd:string id: UBERON:0018368 name: processus ventrolateralis of thoracic vertebra def: "Ventrolaerally oriented, paired projections atttached to the ventrolateral border of the body of certain thoracic vertebra; the ventrolateral crest flank the crista ventralis on each side. From Baumel et al. 1993." [PHENOSCAPE:Alex] +subset: human_subset +subset: mouse_subset synonym: "crista ventrolateralis, processus inferolateralis" EXACT [PHENOSCAPE:Alex] synonym: "processus ventrolateralis" EXACT [] xref: NOID:1 @@ -345200,18 +362153,24 @@ is_a: UBERON:0010202 ! lateral line id: UBERON:0018371 name: ventral supracondylar tubercle def: "Tubercle on the distal humerus for the origin of the Lig. collaterale ventral of the elbow joint. Modified from Baumel et al. 1993." [PHENOSCAPE:Alex, PHENOSCAPE:Nizar] +subset: human_subset +subset: mouse_subset is_a: UBERON:4200177 ! supracondyle tubercle [Term] id: UBERON:0018372 name: dorsal supracondylar tubercle def: "Tubercle on the dorsal border of the distal humerus, a short distance from the dorsal epicondyle, for the origin of the m extensor carpe radialis modifeid from Baumel et al. 1993." [PHENOSCAPE:Alex, PHENOSCAPE:Nizar] +subset: human_subset +subset: mouse_subset is_a: UBERON:4200177 ! supracondyle tubercle [Term] id: UBERON:0018373 name: vidian canal def: "Canal for the vidian nerve." [PHENOSCAPE:Nizar] +subset: human_subset +subset: mouse_subset synonym: "canalis pterygoidei" RELATED [Wikipedia:Pterygoid_canal] synonym: "canalis pterygoideus" RELATED [Wikipedia:Pterygoid_canal] synonym: "pterygoid canal" EXACT [FMA:54756] @@ -345238,6 +362197,7 @@ relationship: present_in_taxon NCBITaxon:8561 {source="ISBN:9780387714691"} ! Ge [Term] id: UBERON:0018375 name: deciduous premolar 5 +subset: human_subset synonym: "deciduous premolar 5" EXACT [] synonym: "primary premolar 5 tooth" EXACT [] is_a: UBERON:0017269 ! primary premolar tooth @@ -345250,6 +362210,8 @@ relationship: part_of UBERON:0007116 ! primary dentition id: UBERON:0018376 name: molar tooth 1 def: "The molar tooth of the upper or lower jaw that is phylogenetically number 1." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "first molar tooth" EXACT [] synonym: "molar 1" EXACT [] synonym: "molar 1 tooth" EXACT [] @@ -345261,6 +362223,8 @@ is_a: UBERON:0003655 ! molar tooth id: UBERON:0018377 name: molar tooth 3 def: "The molar tooth of the upper or lower jaw that is phylogenetically number 3." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "molar 3" EXACT [] synonym: "molar 3 tooth" EXACT [] synonym: "third molar tooth" EXACT [] @@ -345327,6 +362291,8 @@ relationship: in_taxon NCBITaxon:6178 ! Trematoda id: UBERON:0018389 name: interoceptor def: "A sensory receptor that detects stimulus within the body. Examples of stimuli that would be detected by interoceptors include blood pressure and blood oxygen level." [Wikipedia:Interoceptor] +subset: human_subset +subset: mouse_subset synonym: "enteroceptor" EXACT [FMA:84656] synonym: "visceroceptor" EXACT [FMA:84656] xref: FMA:84656 @@ -345338,6 +362304,8 @@ relationship: part_of UBERON:0036255 ! interoceptive system id: UBERON:0018391 name: chemoreceptor def: "A sensory receptor that detects chemical stimulus within the body." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: FMA:85604 is_a: UBERON:0018389 {source="FMA"} ! interoceptor intersection_of: UBERON:0012451 ! sensory receptor @@ -345349,6 +362317,8 @@ property_value: external_definition "Cells specialized to detect chemical substa id: UBERON:0018392 name: arterial baroreceptor def: "Arterial baroreceptors are stretch receptors that are stimulated by distortion of the arterial wall when pressure changes." [Wikipedia:Baroreceptor#Arterial_baroreceptors] +subset: human_subset +subset: mouse_subset synonym: "arterial stretch receptor" RELATED [MESH:A08.800.050.800.900.700] is_a: UBERON:0004019 ! baroreceptor intersection_of: UBERON:0004019 ! baroreceptor @@ -345359,12 +362329,16 @@ relationship: located_in UBERON:0001637 ! artery id: UBERON:0018393 name: low-pressure baroreceptor def: "Found in large systemic veins, in pulmonary vessels, and in the walls of the right atrium and ventricles of the heart (the atrial volume receptors)." [Wikipedia:Baroreceptor#Low-pressure_baroreceptors] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004019 ! baroreceptor [Term] id: UBERON:0018394 name: vein baroreceptor def: "A baroreceptor that located_in a vein." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0018393 ! low-pressure baroreceptor intersection_of: UBERON:0004019 ! baroreceptor intersection_of: located_in UBERON:0001638 ! vein @@ -345374,6 +362348,8 @@ relationship: located_in UBERON:0001638 ! vein id: UBERON:0018395 name: cardiac baroreceptor def: "A baroreceptor that located_in a heart." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0018393 ! low-pressure baroreceptor intersection_of: UBERON:0004019 ! baroreceptor intersection_of: located_in UBERON:0000948 ! heart @@ -345383,6 +362359,8 @@ relationship: located_in UBERON:0000948 ! heart id: UBERON:0018396 name: pulmonary baroreceptor def: "A baroreceptor that located_in a pulmonary vascular system." [OBOL:automatic] +subset: human_subset +subset: mouse_subset is_a: UBERON:0018393 ! low-pressure baroreceptor intersection_of: UBERON:0004019 ! baroreceptor intersection_of: located_in UBERON:0008886 ! pulmonary vascular system @@ -345393,6 +362371,8 @@ id: UBERON:0018397 name: posterior superior alveolar artery def: "The posterior superior alveolar artery (posterior dental artery) is given off from the maxillary, frequently in conjunction with the infraorbital just as the trunk of the vessel is passing into the pterygopalatine fossa." [Wikipedia:Posterior_superior_alveolar_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "superior posterior alveolar artery" EXACT [FMA:49757] xref: FMA:49757 xref: Wikipedia:Posterior_superior_alveolar_artery @@ -345404,6 +362384,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0018398 name: superior alveolar nerve +subset: human_subset +subset: mouse_subset synonym: "superior dental nerve" EXACT [FMA:52930] xref: FMA:52930 xref: SCTID:280235006 @@ -345419,6 +362401,8 @@ relationship: part_of UBERON:0000377 ! maxillary nerve id: UBERON:0018401 name: posterior superior alveolar nerve def: "The posterior superior alveolar branches (posterior superior dental branches) arise from the trunk of the maxillary nerve just before it enters the infraorbital groove; they are generally two in number, but sometimes arise by a single trunk. They descend on the tuberosity of the maxilla and give off several twigs to the gums and neighboring parts of the mucous membrane of the cheek. They then enter the posterior alveolar canals on the infratemporal surface of the maxilla, and, passing from behind forward in the substance of the bone, communicate with the middle superior alveolar nerve, and give off branches to the lining membrane of the maxillary sinus and gingival and dental branches to each molar tooth from a superior dental plexus; these branches enter the apical foramina at the roots of the teeth. The posterior superior alveolar nerve innervates the second and third maxillary molars, and two of the three roots of the maxillary first molar (all but the mesiobuccal root). When giving a Posterior Superior Alveolar nerve block, it will anesthetize the mesialbuccal root of the maxillary first molar approximately 72% of the time." [Wikipedia:Posterior_superior_alveolar_nerve] +subset: human_subset +subset: mouse_subset synonym: "posterior superior alveolar branches" RELATED [Wikipedia:Posterior_superior_alveolar_nerve] synonym: "posterior superior dental nerve" EXACT [FMA:52931] xref: FMA:52931 @@ -345429,6 +362413,8 @@ disjoint_from: UBERON:0035646 {source="lexical"} ! anterior superior alveolar ne [Term] id: UBERON:0018405 name: inferior alveolar nerve +subset: human_subset +subset: mouse_subset synonym: "inferior dental nerve" EXACT [FMA:53243] xref: FMA:53243 xref: SCTID:280261005 @@ -345440,6 +362426,8 @@ relationship: part_of UBERON:0003721 ! lingual nerve id: UBERON:0018406 name: mental nerve def: "Mental nerve is a general somatic afferent (sensory) nerve which provides sensation to the anterior aspects of the chin and lower lip as well as the buccal gingivae of the mandibular anterior teeth and the premolars. It is a branch of the posterior trunk of the inferior alveolar nerve, which is itself a branch of the mandibular division of the trigeminal nerve (CN V). The nerve emerges at the mental foramen in the mandibula, and divides beneath the Depressor anguli oris muscle into three branches: one descends to the skin of the chin. two ascend to the skin and mucous membrane of the lower lip. These branches communicate freely with the facial nerve." [Wikipedia:Mental_nerve] +subset: human_subset +subset: mouse_subset xref: FMA:53250 xref: SCTID:280138001 xref: Wikipedia:Mental_nerve @@ -345455,6 +362443,8 @@ relationship: part_of UBERON:0018405 ! inferior alveolar nerve id: UBERON:0018407 name: infra-orbital foramen of maxilla def: "A foramen on the exterior of the maxilla that is continuous with the infra-orbital canal and is the conduit for the passage of the infraorbital nerve and artery." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "foramen infraorbitale" EXACT OMO:0003011 [Wikipedia:Infraorbital_foramen] synonym: "infra-orbital foramen" EXACT [FMA:57718] synonym: "infraorbital foramen" EXACT [MFMO:0000054] @@ -345477,6 +362467,8 @@ relationship: part_of UBERON:0002397 ! maxilla id: UBERON:0018408 name: infra-orbital nerve def: "A branch of the maxillary nerve that enters the infraorbital canal and innervates the lower eyelid, upper lip, the nasal vestibule, the upper incisors, canines, premolars, upper gums, lower eyelid and conjunctiva, and part of the nose." [http://medical-dictionary.thefreedictionary.com/infra-orbital+nerve, Wikipedia:Infraorbital_nerve] +subset: human_subset +subset: mouse_subset synonym: "infra-orbital nerve" RELATED [Wikipedia:Infraorbital_nerve] synonym: "infraorbital nerve" EXACT [FMA:52978] synonym: "infraorbital portion" RELATED [Wikipedia:Infraorbital_nerve] @@ -345502,6 +362494,8 @@ relationship: part_of UBERON:0000377 ! maxillary nerve id: UBERON:0018409 name: infra-orbital groove of maxilla def: "A groove on the interior of the maxilla that is continuous with the infra-orbital canal and is the conduit for the passage of the infraorbital nerve and artery." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "infra-orbital groove" EXACT [Wikipedia:Infraorbital_groove] synonym: "infraorbital groove" EXACT [Wikipedia:Infraorbital_groove] synonym: "sulcus infraorbitalis" RELATED [Wikipedia:Infraorbital_groove] @@ -345515,6 +362509,8 @@ relationship: part_of UBERON:0002397 ! maxilla id: UBERON:0018410 name: lacteal def: "A lymphatic capillary that absorbs dietary fats in the villi of the small intestine." [Wikipedia:Lacteals] +subset: human_subset +subset: mouse_subset synonym: "lymphatic capillary of small intestine" EXACT [http://orcid.org/0000-0003-4183-8865] synonym: "small intestine lymphatic capillary" EXACT [http://orcid.org/0000-0003-4183-8865] xref: FMA:68443 @@ -345531,6 +362527,8 @@ relationship: part_of UBERON:0001213 ! intestinal villus id: UBERON:0018411 name: ligament of hip joint def: "A skeletal ligament that is part of a hip joint." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "hip joint ligament" EXACT [FMA:42868] xref: FMA:42868 xref: SCTID:182435001 @@ -345545,6 +362543,8 @@ id: UBERON:0018412 name: vidian nerve def: "A nerve that is formed by the junction of the great petrosal nerve and the deep petrosal nerve and continues on to innervate the palate, nose and lacrimal gland." [http://medical-dictionary.thefreedictionary.com/vidian+nerve, Wikipedia:Nerve_of_pterygoid_canal] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "nerve of pterygoid canal" EXACT [FMA:67584] synonym: "nerve of the pterygoid canal" RELATED [Wikipedia:Nerve_of_pterygoid_canal] synonym: "pterygoid canal nerve" EXACT [FMA:67584] @@ -345564,6 +362564,8 @@ property_value: external_ontology_notes "FMA classifies as an anatomical junctio id: UBERON:0018413 name: facial nerve canal def: "A Z-shaped canal running through the temporal bone from the internal acoustic meatus to the stylomastoid foramen. It is located within the middle ear region, according to its shape it is divided into three main segments: the labyrinthine, the tympanic, and the mastoidal segment ." [Wikipedia:Facial_canal] +subset: human_subset +subset: mouse_subset synonym: "canalis nervi facialis" EXACT OMO:0003011 [FMA:54952, FMA:TA] synonym: "facial canal" EXACT [FMA:54952] synonym: "fallopian canal" RELATED [FMA:54952] @@ -345580,6 +362582,8 @@ id: UBERON:0018415 name: ethmoid foramen def: "An bone foramen in the ethmoid bone." [http://orcid.org/0000-0002-6601-2165] comment: Taxon nodes: In humans, refers to anterior or posterior ethmoid foramina +subset: human_subset +subset: mouse_subset synonym: "ethmoid foramina" RELATED OMO:0003004 [] synonym: "ethmoidal foramen" EXACT [] synonym: "ethmoidal foramina" RELATED OMO:0003004 [] @@ -345596,6 +362600,8 @@ property_value: taxon_notes "There are usually two Foramina ethmoidalia present id: UBERON:0018424 name: petrosal foramen def: "A foramen of skull that is part of a petrosal bone." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "Foramen petrosum" EXACT [FMA:53158] xref: FMA:53158 is_a: UBERON:0013685 ! foramen of skull @@ -345607,6 +362613,8 @@ relationship: part_of UBERON:0018348 ! petrosal bone id: UBERON:0018508 name: foramen of nasal bone def: "A vascular foramen opening on the outer surface of a nasal bone." [http://medical-dictionary.thefreedictionary.com/nasal+foramina] +subset: human_subset +subset: mouse_subset synonym: "foramen of nasal bone" RELATED [] synonym: "foramina nasalia" EXACT OMO:0003011 [Wikipedia:Nasal_foramina] synonym: "nasal foramen" EXACT [] @@ -345624,6 +362632,8 @@ relationship: part_of UBERON:0001681 ! nasal bone id: UBERON:0018529 name: female inguinal ring def: "An inguinal ring that is part of a female reproductive system." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:19172 xref: MA:0003250 is_a: UBERON:0005156 ! reproductive structure @@ -345637,6 +362647,8 @@ relationship: part_of UBERON:0004353 ! female inguinal canal id: UBERON:0018530 name: male inguinal ring def: "An inguinal ring that is part of a male reproductive system." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:29307 is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006674 ! inguinal ring @@ -345649,6 +362661,8 @@ relationship: part_of UBERON:0004354 ! male inguinal canal id: UBERON:0018531 name: female superficial inguinal ring def: "A deep inguinal ring that is part of a female reproductive system." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "female external inguinal ring" EXACT [MA:0003252] xref: EMAPA:19174 xref: MA:0003252 @@ -345662,6 +362676,8 @@ relationship: part_of UBERON:0000474 ! female reproductive system id: UBERON:0018532 name: female deep inguinal ring def: "A deep inguinal ring that is part of a male reproductive system." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "female internal inguinal ring" EXACT [MA:0003251] xref: EMAPA:19173 xref: MA:0003251 @@ -345675,6 +362691,8 @@ relationship: part_of UBERON:0000079 ! male reproductive system id: UBERON:0018533 name: crus of penis or clitoris def: "The continuation of each corpus cavernosum of the penis or clitoris, diverging posteriorly to be attached to the pubic arch." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006609 ! corpus cavernosum @@ -345765,6 +362783,8 @@ relationship: part_of UBERON:0000310 ! breast id: UBERON:0018542 name: mandibular symphyseal region def: "The region of the mandible on or near the midline (near the mandiblular symphysis)." [MFMO:0000147] +subset: human_subset +subset: mouse_subset synonym: "symphyseal region" BROAD [MFMO:0000147] xref: MFMO:0000147 is_a: UBERON:0005913 ! zone of bone organ @@ -345775,6 +362795,8 @@ relationship: part_of UBERON:0004742 ! dentary id: UBERON:0018543 name: lumen of intestine def: "The anatomical space within the intestine." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "gut lumen" RELATED [ZFA:0005807] synonym: "intestinal lumen" EXACT [FMA:14586] synonym: "intestine lumen" EXACT [ZFA:0005807] @@ -345793,6 +362815,8 @@ property_value: editor_note "see notes in inclusivity in class 'intestine'" xsd: id: UBERON:0018544 name: trigeminal nerve muscle def: "Muscle innervated by the trigeminal nerve (Cranial Nerve V)." [MFMO:0000072] +subset: human_subset +subset: mouse_subset synonym: "muscle innervated by the trigeminal nerve" EXACT [] synonym: "muscles innervated by the trigeminal nerve" EXACT OMO:0003004 [MFMO:0000072] xref: MFMO:0000072 @@ -345806,6 +362830,8 @@ relationship: innervated_by UBERON:0001645 ! trigeminal nerve id: UBERON:0018545 name: nucleus of the bulbocavernosus def: "A cluster of motoneurons located in the anterior gray column of lumbar segments 5 and 6 of the spinal cord in the rat. Functionally it belongs to the somatic motoneuron pools of the subcortical motor system ( Swanson-2004 )." [NeuroNames:2700] +subset: human_subset +subset: mouse_subset synonym: "nucleus of the bulbocavernosus" RELATED [NeuroNames:2700] synonym: "nucleus of the bulbospongiosus" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "spinal nucleus of the bulbocavernosus" RELATED [https://www.msu.edu/~bjlab/snb.html] @@ -345819,6 +362845,8 @@ property_value: development_notes "Before birth, male and female rats have the m id: UBERON:0018549 name: ventral wall of dorsal aorta def: "Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf." [ZFA:0005028, ZFA:curator] +subset: human_subset +subset: mouse_subset synonym: "DA roof" RELATED [ZFA:0005028] synonym: "DA-PCV joint" EXACT [ZFA:0005028] synonym: "DA-PCV joint" NARROW [ZFA:0005028] @@ -345835,6 +362863,8 @@ relationship: part_of UBERON:0005805 {source="ZFA"} ! dorsal aorta [Term] id: UBERON:0018550 name: secondary incisor tooth +subset: human_subset +subset: mouse_subset synonym: "permanent incisor" EXACT [] synonym: "permanent incisor tooth" EXACT [FMA:84201] xref: FMA:84201 @@ -345849,6 +362879,8 @@ relationship: part_of UBERON:0007774 ! secondary dentition id: UBERON:0018551 name: incisor tooth 1 def: "The incisor tooth of the upper or lower jaw that is phylogenetically number 1." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "central incisor" EXACT HUMAN_PREFERRED [] synonym: "first incisor tooth" EXACT [] @@ -345859,6 +362891,8 @@ is_a: UBERON:0001098 ! incisor tooth id: UBERON:0018552 name: incisor tooth 2 def: "The incisor tooth of the upper or lower jaw that is phylogenetically number 2." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lateral incisor" EXACT HUMAN_PREFERRED [] synonym: "second incisor tooth" EXACT [] @@ -345868,6 +362902,8 @@ is_a: UBERON:0001098 ! incisor tooth [Term] id: UBERON:0018553 name: primary central incisor tooth +subset: human_subset +subset: mouse_subset synonym: "primary central incisor" EXACT [] synonym: "primary first incisor tooth" EXACT [] is_a: UBERON:0016476 ! primary incisor tooth @@ -345879,6 +362915,8 @@ relationship: part_of UBERON:0018645 ! incisor region of dentition [Term] id: UBERON:0018554 name: primary lateral incisor tooth +subset: human_subset +subset: mouse_subset synonym: "primary lateral incisor" EXACT [] synonym: "primary second incisor tooth" EXACT [] is_a: UBERON:0015212 ! lateral structure @@ -345892,6 +362930,7 @@ relationship: part_of UBERON:0018645 ! incisor region of dentition id: UBERON:0018561 name: upper secondary canine tooth def: "A secondary canine tooth that is part of a upper jaw region." [OBOL:automatic] +subset: human_subset synonym: "C" RELATED OMO:0003000 [] synonym: "maxillary secondary canine tooth" EXACT [FMA:55714] synonym: "permanent upper canine tooth" RELATED [FMA:55714] @@ -345908,6 +362947,7 @@ relationship: part_of UBERON:0001709 ! upper jaw region id: UBERON:0018562 name: lower secondary canine tooth def: "A secondary canine tooth that is part of a lower jaw region." [OBOL:automatic] +subset: human_subset synonym: "c" RELATED OMO:0003000 [] synonym: "lower permanent canine tooth" EXACT [FMA:55715] synonym: "mandibular secondary canine tooth" EXACT [FMA:55715] @@ -345924,6 +362964,8 @@ relationship: part_of UBERON:0001710 ! lower jaw region id: UBERON:0018568 name: lower central secondary incisor tooth def: "A lower jaw incisor that is in_the_central_side_of a dentition." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "i1" RELATED OMO:0003000 [] synonym: "lower central permanent incisor tooth" EXACT [FMA:55723] @@ -345943,6 +362985,8 @@ relationship: part_of UBERON:0007774 ! secondary dentition id: UBERON:0018570 name: lower lateral secondary incisor tooth def: "A lower jaw incisor that is in_the_lateral_side_of a dentition." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "i2" RELATED OMO:0003000 [] synonym: "lower lateral permanent incisor tooth" EXACT [FMA:55725] @@ -345961,6 +363005,7 @@ relationship: part_of UBERON:0007774 ! secondary dentition [Term] id: UBERON:0018571 name: upper first secondary premolar tooth +subset: human_subset synonym: "maxillary first secondary premolar tooth" EXACT [FMA:55801] synonym: "P1" RELATED OMO:0003000 [] synonym: "permanent first upper premolar tooth" RELATED [FMA:55801] @@ -345979,6 +363024,7 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a [Term] id: UBERON:0018572 name: upper second secondary premolar tooth +subset: human_subset synonym: "maxillary second secondary premolar tooth" EXACT [FMA:55802] synonym: "P2" RELATED OMO:0003000 [] synonym: "permanent second upper premolar tooth" RELATED [FMA:55802] @@ -345997,6 +363043,7 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a [Term] id: UBERON:0018573 name: lower first secondary premolar tooth +subset: human_subset synonym: "lower first permanent premolar tooth" EXACT [FMA:55803] synonym: "mandibular first secondary premolar tooth" EXACT [FMA:55803] synonym: "p1" RELATED OMO:0003000 [] @@ -346015,6 +363062,7 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a [Term] id: UBERON:0018574 name: lower second secondary premolar tooth +subset: human_subset synonym: "lower second permanent premolar tooth" EXACT [FMA:55804] synonym: "mandibular second secondary premolar tooth" EXACT [FMA:55804] synonym: "p2" RELATED OMO:0003000 [] @@ -346033,6 +363081,8 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a [Term] id: UBERON:0018575 name: upper first secondary molar tooth +subset: human_subset +subset: mouse_subset synonym: "M1" RELATED OMO:0003000 [] synonym: "maxillary first secondary molar tooth" EXACT [FMA:55811] synonym: "upper first permanent molar tooth" EXACT [FMA:55811] @@ -346050,6 +363100,8 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a [Term] id: UBERON:0018576 name: upper second secondary molar tooth +subset: human_subset +subset: mouse_subset synonym: "M2" RELATED OMO:0003000 [] synonym: "maxillary second secondary molar tooth" EXACT [FMA:55812] synonym: "upper second permanent tooth" EXACT [FMA:55812] @@ -346066,6 +363118,8 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a [Term] id: UBERON:0018577 name: upper third secondary molar tooth +subset: human_subset +subset: mouse_subset synonym: "dens serotinus (upper)" EXACT OMO:0003011 [FMA:55813, FMA:TA] synonym: "M3" RELATED OMO:0003000 [] synonym: "maxillary third secondary molar tooth" EXACT [FMA:55813] @@ -346086,6 +363140,8 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a [Term] id: UBERON:0018578 name: lower first secondary molar tooth +subset: human_subset +subset: mouse_subset synonym: "lower first permanent molar tooth" EXACT [FMA:55814] synonym: "m1" RELATED OMO:0003000 [] synonym: "mandibular first secondary molar tooth" EXACT [FMA:55814] @@ -346102,6 +363158,8 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a [Term] id: UBERON:0018579 name: lower second secondary molar tooth +subset: human_subset +subset: mouse_subset synonym: "lower second permanent molar tooth" EXACT [FMA:55815] synonym: "lower secondary molar 2" EXACT [] synonym: "m2" RELATED OMO:0003000 [] @@ -346119,6 +363177,8 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a [Term] id: UBERON:0018580 name: lower third secondary molar tooth +subset: human_subset +subset: mouse_subset synonym: "lower secondary molar 3" EXACT [] synonym: "lower third permanent molar tooth" EXACT [FMA:55817] synonym: "lower wisdom tooth" EXACT [FMA:55817] @@ -346138,6 +363198,7 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a [Term] id: UBERON:0018583 name: primary canine tooth +subset: human_subset synonym: "deciduous canine tooth" EXACT [FMA:84202] synonym: "primary tooth C" EXACT [FMA:84202] synonym: "temporary canine tooth" EXACT [FMA:84202] @@ -346152,6 +363213,7 @@ relationship: part_of UBERON:0007116 ! primary dentition [Term] id: UBERON:0018584 name: secondary canine tooth +subset: human_subset synonym: "permanent canine tooth" EXACT [FMA:84203] xref: FMA:84203 xref: SCTID:134340007 @@ -346164,6 +363226,8 @@ relationship: part_of UBERON:0007774 ! secondary dentition [Term] id: UBERON:0018588 name: upper first primary molar tooth +subset: human_subset +subset: mouse_subset synonym: "dM1" RELATED OMO:0003000 [] synonym: "upper first deciduous molar tooth" EXACT [FMA:84211] synonym: "upper primary tooth D" EXACT [FMA:84211] @@ -346181,6 +363245,8 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a [Term] id: UBERON:0018589 name: lower first primary molar tooth +subset: human_subset +subset: mouse_subset synonym: "dm1" RELATED OMO:0003000 [] synonym: "lower first deciduous molar tooth" EXACT [FMA:84212] synonym: "lower primary molar 1" EXACT [] @@ -346199,6 +363265,8 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a id: UBERON:0018591 name: upper primary incisor tooth def: "A primary incisor tooth that is part of a upper jaw region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "deciduous upper incisor tooth" RELATED [FMA:84214] synonym: "upper deciduous incisor tooth" EXACT [FMA:84214] xref: FMA:84214 @@ -346213,6 +363281,8 @@ relationship: part_of UBERON:0001709 ! upper jaw region id: UBERON:0018593 name: upper central primary incisor tooth def: "A upper primary canine tooth that is in_the_central_side_of a dentition." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "dI1" RELATED OMO:0003000 [] synonym: "primary upper first incisor tooth" EXACT [] @@ -346230,6 +363300,8 @@ relationship: in_central_side_of UBERON:0018645 ! incisor region of dentition id: UBERON:0018594 name: upper lateral primary incisor tooth def: "A upper primary canine tooth that is in_the_lateral_side_of a dentition." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "dI2" RELATED OMO:0003000 [] synonym: "primary upper second incisor tooth" EXACT [] @@ -346247,6 +363319,8 @@ relationship: in_lateral_side_of UBERON:0018645 ! incisor region of dentition id: UBERON:0018595 name: lower central primary incisor tooth def: "A lower primary incisor tooth that is in_the_central_side_of a dentition." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "deciduous lower central incisor tooth" RELATED [FMA:84218] synonym: "di1" RELATED OMO:0003000 [] @@ -346264,6 +363338,8 @@ relationship: in_central_side_of UBERON:0018645 ! incisor region of dentition id: UBERON:0018596 name: lower lateral primary incisor tooth def: "A lower primary incisor tooth that is in_the_lateral_side_of a dentition." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "deciduous lower lateral incisor tooth" RELATED [FMA:84219] synonym: "di2" RELATED OMO:0003000 [] @@ -346282,6 +363358,7 @@ relationship: in_lateral_side_of UBERON:0018645 ! incisor region of dentition id: UBERON:0018597 name: upper primary canine tooth def: "A primary canine tooth that is part of a upper jaw region." [OBOL:automatic] +subset: human_subset synonym: "dC" RELATED OMO:0003000 [] synonym: "deciduous upper canine tooth" RELATED [FMA:84228] synonym: "upper deciduous canine tooth" EXACT [FMA:84228] @@ -346299,6 +363376,7 @@ relationship: part_of UBERON:0001709 ! upper jaw region id: UBERON:0018598 name: lower primary canine tooth def: "A primary canine tooth that is part of a lower jaw region." [OBOL:automatic] +subset: human_subset synonym: "dc" RELATED OMO:0003000 [] synonym: "deciduous lower canine tooth" RELATED [FMA:84229] synonym: "lower deciduous canine tooth" EXACT [FMA:84229] @@ -346316,6 +363394,8 @@ relationship: part_of UBERON:0001710 ! lower jaw region [Term] id: UBERON:0018599 name: upper second primary molar tooth +subset: human_subset +subset: mouse_subset synonym: "dM2" RELATED OMO:0003000 [] synonym: "upper primary tooth E" EXACT [FMA:84236] synonym: "upper second deciduous molar tooth" EXACT [FMA:84236] @@ -346332,6 +363412,8 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a [Term] id: UBERON:0018600 name: lower second primary molar tooth +subset: human_subset +subset: mouse_subset synonym: "dm2" RELATED OMO:0003000 [] synonym: "lower primary tooth E" EXACT [FMA:84237] synonym: "lower second deciduous molar tooth" EXACT [FMA:84237] @@ -346349,6 +363431,8 @@ property_value: editor_note "TODO - tooth numbering nomeculature to be aligned a id: UBERON:0018601 name: lower central incisor tooth def: "An incisor tooth that is in_the_central_side_of a dentition and is part of a lower jaw region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lower central incisor" EXACT [] synonym: "lower first incisor tooth" EXACT [] @@ -346366,6 +363450,8 @@ relationship: part_of UBERON:0018645 ! incisor region of dentition id: UBERON:0018602 name: lower lateral incisor tooth def: "An incisor tooth that is in_the_lateral_side_of a dentition and is part of a lower jaw region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "lower lateral incisor" EXACT [] synonym: "lower second incisor tooth" EXACT [] @@ -346384,6 +363470,8 @@ relationship: part_of UBERON:0018645 ! incisor region of dentition id: UBERON:0018603 name: upper central incisor tooth def: "An incisor tooth that is in_the_central_side_of a dentition and is part of a upper jaw region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "maxillary central incisor" EXACT [] synonym: "upper central incisor" EXACT [] @@ -346401,6 +363489,8 @@ relationship: part_of UBERON:0018645 ! incisor region of dentition id: UBERON:0018604 name: upper lateral incisor tooth def: "An incisor tooth that is in_the_lateral_side_of a dentition and is part of a upper jaw region." [OBOL:automatic] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "maxillary lateral incisor" EXACT [] synonym: "upper lateral incisor" EXACT [] @@ -346419,6 +363509,8 @@ relationship: part_of UBERON:0018645 ! incisor region of dentition id: UBERON:0018606 name: molar tooth 2 def: "The molar tooth of the upper or lower jaw that is phylogenetically number 2." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "molar 2" EXACT [] synonym: "molar 2 tooth" EXACT [] synonym: "second molar tooth" EXACT [] @@ -346429,6 +363521,8 @@ is_a: UBERON:0003655 ! molar tooth [Term] id: UBERON:0018607 name: permanent molar tooth 2 +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "permanent second molar tooth" EXACT [] synonym: "second permanent molar" EXACT [] @@ -346444,6 +363538,8 @@ relationship: part_of UBERON:0007774 ! secondary dentition [Term] id: UBERON:0018608 name: permanent molar tooth 1 +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "first permanent molar" EXACT [] synonym: "first permanent molar tooth" EXACT [] @@ -346458,6 +363554,8 @@ relationship: part_of UBERON:0007774 ! secondary dentition [Term] id: UBERON:0018613 name: secondary upper tooth +subset: human_subset +subset: mouse_subset synonym: "permanent upper tooth" EXACT [] xref: SCTID:245564000 is_a: UBERON:0003267 ! tooth of upper jaw @@ -346469,6 +363567,8 @@ relationship: part_of UBERON:0001709 ! upper jaw region [Term] id: UBERON:0018614 name: permanent lower tooth +subset: human_subset +subset: mouse_subset synonym: "secondary lower tooth" EXACT [] xref: SCTID:245588003 is_a: UBERON:0003268 ! tooth of lower jaw @@ -346480,6 +363580,8 @@ relationship: part_of UBERON:0001710 ! lower jaw region [Term] id: UBERON:0018616 name: primary upper tooth +subset: human_subset +subset: mouse_subset synonym: "deciduous upper tooth" EXACT [] xref: SCTID:245613009 is_a: UBERON:0003267 ! tooth of upper jaw @@ -346491,6 +363593,8 @@ relationship: part_of UBERON:0001709 ! upper jaw region [Term] id: UBERON:0018617 name: primary lower tooth +subset: human_subset +subset: mouse_subset synonym: "deciduous lower tooth" EXACT [] xref: SCTID:245628009 is_a: UBERON:0003268 ! tooth of lower jaw @@ -346502,6 +363606,7 @@ relationship: part_of UBERON:0001710 ! lower jaw region [Term] id: UBERON:0018621 name: upper canine tooth +subset: human_subset synonym: "maxillary canine tooth" EXACT [] synonym: "upper canine" EXACT [] synonym: "upper cuspid" EXACT [] @@ -346514,6 +363619,7 @@ relationship: part_of UBERON:0001709 ! upper jaw region [Term] id: UBERON:0018622 name: lower canine tooth +subset: human_subset synonym: "lower canine" EXACT [] synonym: "lower cuspid" EXACT [] synonym: "mandibular canine tooth" EXACT [] @@ -346526,6 +363632,8 @@ relationship: part_of UBERON:0001710 ! lower jaw region [Term] id: UBERON:0018623 name: lower secondary incisor tooth +subset: human_subset +subset: mouse_subset synonym: "lower permanent incisor tooth" EXACT [FMA:55713] synonym: "mandibular secondary incisor tooth" EXACT [FMA:55713] synonym: "permanent lower incisor tooth" RELATED [FMA:55713] @@ -346545,6 +363653,7 @@ is_obsolete: true [Term] id: UBERON:0018640 name: premolar 2 +subset: human_subset synonym: "second premolar tooth" EXACT [] xref: SCTID:422370006 is_a: UBERON:0007120 ! premolar tooth @@ -346552,6 +363661,8 @@ is_a: UBERON:0007120 ! premolar tooth [Term] id: UBERON:0018643 name: deciduous molar tooth 2 +subset: human_subset +subset: mouse_subset synonym: "deciduous second molar tooth" EXACT [] xref: SCTID:422595006 is_a: UBERON:0013616 ! primary molar tooth @@ -346563,6 +363674,8 @@ relationship: part_of UBERON:0007116 ! primary dentition [Term] id: UBERON:0018644 name: deciduous molar tooth 1 +subset: human_subset +subset: mouse_subset synonym: "deciduous first molar tooth" EXACT [] synonym: "deciduous molar 1" EXACT [] synonym: "first temporarary molar" EXACT [] @@ -346577,6 +363690,8 @@ relationship: part_of UBERON:0007116 ! primary dentition id: UBERON:0018645 name: incisor region of dentition def: "The subdivision of the dentition that consists entire of incisor teeth." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "set of incisors" RELATED [] is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000061 ! anatomical structure @@ -346589,6 +363704,7 @@ relationship: part_of UBERON:0003672 ! dentition id: UBERON:0018646 name: premolar tooth 5 def: "The premolar tooth of the upper or lower jaw that is phylogenetically number 5." [UBERON:cjm] +subset: human_subset synonym: "premolar 5" EXACT [] is_a: UBERON:0007120 ! premolar tooth @@ -346596,6 +363712,7 @@ is_a: UBERON:0007120 ! premolar tooth id: UBERON:0018647 name: premolar tooth 4 def: "The premolar tooth of the upper or lower jaw that is phylogenetically number 4." [UBERON:cjm] +subset: human_subset synonym: "premolar 4" EXACT [] is_a: UBERON:0007120 ! premolar tooth @@ -346603,6 +363720,7 @@ is_a: UBERON:0007120 ! premolar tooth id: UBERON:0018648 name: upper premolar 4 comment: Often called the carnassial tooth, this tooth acts with its counterpart in the lower jaw (the 1st molar in that case) to slice food in a scissoring action.[MURDOCH:2142] +subset: human_subset synonym: "carnassial tooth" RELATED [MURDOCH:2142] is_a: UBERON:0016944 ! upper premolar tooth is_a: UBERON:0018647 ! premolar tooth 4 @@ -346613,6 +363731,8 @@ relationship: part_of UBERON:0001709 ! upper jaw region [Term] id: UBERON:0018649 name: cardiac muscle tissue of ventricle +subset: human_subset +subset: mouse_subset synonym: "ventricular cardiac muscle tissue" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "ventricular heart muscle" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "ventricular muscle" RELATED [http://orcid.org/0000-0002-6601-2165] @@ -346636,6 +363756,8 @@ relationship: in_taxon NCBITaxon:6340 {source="Wikipedia"} ! Annelida id: UBERON:0018651 name: foramen lacerum def: "A triangular hole in the base of the skull located at the base of the medial pterygoid plate." [Wikipedia:Foramen_lacerum] +subset: human_subset +subset: mouse_subset xref: FMA:54809 xref: SCTID:369444009 xref: Wikipedia:Foramen_lacerum @@ -346657,6 +363779,8 @@ property_value: location_notes "Bounded medially by the Lamina orbitalis of the id: UBERON:0018653 name: anterior ethmoidal foramen def: "The anterior ethmoidal foramen, situated about the middle of the lateral margin of the olfactory groove, transmits the anterior ethmoidal vessels and the anterior ethmoidal nerve; the nerve runs in a groove along the lateral edge of the cribriform plate to the slit-like opening above mentioned." [Wikipedia:Anterior_ethmoidal_foramen] +subset: human_subset +subset: mouse_subset synonym: "foramina ethmoidalia anterius" EXACT OMO:0003011 [] xref: FMA:53135 xref: Wikipedia:Anterior_ethmoidal_foramen @@ -346667,6 +363791,8 @@ disjoint_from: UBERON:0018654 {source="lexical"} ! posterior ethmoidal foramen id: UBERON:0018654 name: posterior ethmoidal foramen def: "The posterior ethmoidal foramen opens at the back part of this margin under cover of the projecting lamina of the sphenoid, and transmits the posterior ethmoidal vessels and nerve." [Wikipedia:Posterior_ethmoidal_foramen] +subset: human_subset +subset: mouse_subset synonym: "foramina ethmoidalia posterius" EXACT OMO:0003011 [] xref: FMA:53136 xref: Wikipedia:Posterior_ethmoidal_foramen @@ -346676,6 +363802,8 @@ is_a: UBERON:0013685 {source="FMA"} ! foramen of skull id: UBERON:0018655 name: pars endotympanica def: "This is present in the cat and forms the large medial part of the Bulla tympanica. It is not to be regarded as a part of the pars tympanica, which ossifies directly from connective tissue, whereas the Pars endotympanica is preformed in cartilage. The Septum bullae in the cat is formed by the Pars tympanica as well as by the Pars endotympanica(NOMINA ANATOMICA VETERINARIA (2005))." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0013190 ! entotympanic bone @@ -346714,6 +363842,8 @@ relationship: part_of UBERON:0001846 ! internal ear id: UBERON:0018664 name: neck of bone element def: "The neck region of a bone organ." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "bone neck" EXACT [] synonym: "neck of bone" EXACT [] is_a: UBERON:0001560 ! neck of organ @@ -346725,6 +363855,8 @@ relationship: part_of UBERON:0001474 ! bone element [Term] id: UBERON:0018667 name: neck of scapula +subset: human_subset +subset: mouse_subset synonym: "anatomical neck of scapula" EXACT [FMA:23254] synonym: "collum scapulae" EXACT [] synonym: "scapular neck" EXACT [FMA:23254] @@ -346745,6 +363877,8 @@ replaced_by: UBERON:4200172 id: UBERON:0018673 name: neck of fibula subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "fibula neck" EXACT [FMA:35508] synonym: "fibular neck" EXACT [] xref: EMAPA:37891 {source="MA:th"} @@ -346761,6 +363895,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0018674 name: heart vasculature def: "An interconnected tubular multi-tissue structure that contains fluid that is actively transported around the heart." [ZFA:0005811, ZFA:CVS] +subset: human_subset +subset: mouse_subset synonym: "cardiac vasculature" EXACT [FMA:73747] xref: FMA:73747 xref: ZFA:0005811 @@ -346775,6 +363911,8 @@ id: UBERON:0018675 name: pelvic splanchnic nerve def: "A splanchnic nerves that arises from sacral spinal nerves S2, S3, S4 to provide parasympathetic innervation to the hindgut." [Wikipedia:Pelvic_splanchnic_nerves] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "nervi erigentes" RELATED OMO:0003011 [Wikipedia:Pelvic_splanchnic_nerves] synonym: "nervi pelvici splanchnici" RELATED OMO:0003011 [Wikipedia:Pelvic_splanchnic_nerves] synonym: "nervi splanchnici pelvici" RELATED [Wikipedia:Pelvic_splanchnic_nerves] @@ -346795,6 +363933,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0018676 name: renal nerve plexus def: "The renal plexus is formed by filaments from the celiac plexus, the aorticorenal ganglion, and the aortic plexus . It is joined also by the least splanchnic nerve. The nerves from these sources, fifteen or twenty in number, have a few ganglia developed upon them. They accompany the branches of the renal artery into the kidney; some filaments are distributed to the spermatic plexus and, on the right side, to the inferior vena cava." [Wikipedia:Renal_plexus] +subset: human_subset +subset: mouse_subset synonym: "plexus renalis" EXACT [FMA:TA] synonym: "renal plexus" EXACT [FMA:6636] xref: FMA:6636 @@ -346807,6 +363947,8 @@ id: UBERON:0018679 name: thoracic splanchnic nerve def: "Thoracic splanchnic nerves are splanchnic nerves that arise from the sympathetic trunk in the thorax and travel inferiorly to provide sympathetic innervation to the abdomen. The nerves contain preganglionic sympathetic and general visceral afferent fibers." [Wikipedia:Thoracic_splanchnic_nerves] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:6280 xref: Wikipedia:Thoracic_splanchnic_nerves is_a: UBERON:0003715 ! splanchnic nerve @@ -346823,6 +363965,8 @@ id: UBERON:0018680 name: greater splanchnic nerve comment: The nerve travels through the diaphragm and enters the abdominal cavity, where its fibers synapse at the celiac ganglia. The nerve contributes to the celiac plexus, a network of nerves located in the vicinity of where the celiac trunk branches from the abdominal aorta. The fibers in this nerve modulate the activity of the enteric nervous system of the foregut. They also provide the sympathetic innervation to the adrenal medulla, stimulating catecholamine release. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "greater thoracic splanchnic nerve" EXACT [FMA:6281] xref: FMA:6281 xref: SCTID:280503007 @@ -346834,6 +363978,8 @@ id: UBERON:0018681 name: lesser splanchnic nerve comment: The nerve travels inferiorly, lateral to the greater splanchnic nerve. Its fibers synapse with their postganglionic counterparts in the superior mesenteric ganglia, or in the aorticorenal ganglion. The nerve modulates the activity of the enteric nervous system of the midgut. subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lesser thoracic splanchnic nerve" EXACT [FMA:6282] xref: FMA:6282 xref: SCTID:280505000 @@ -346845,6 +363991,8 @@ id: UBERON:0018683 name: lumbar splanchnic nerve def: "The lumbar splanchnic nerves are splanchnic nerves that arise from the lumbar part of the sympathetic trunk and travel to an adjacent plexus near the aorta. They are originated from L1 and L2. These nerves contain preganglionic sympathetic and visceral afferent fibers. The site of synapse is found in the prevertebral ganglia and innervate the smooth muscle and glands of the pelvic viscera and hindgut." [Wikipedia:Lumbar_splanchnic_nerves] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lumbar splanchnic nerve" RELATED [Wikipedia:Lumbar_splanchnic_nerves] xref: FMA:6287 xref: SCTID:280507008 @@ -346856,6 +364004,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0018684 name: sacral splanchnic nerve def: "A splanchnic nerve that connects the inferior hypogastric plexus to the sympathetic trunk in the pelvis." [Wikipedia:Sacral_splanchnic_nerves] +subset: human_subset +subset: mouse_subset xref: FMA:6288 xref: Wikipedia:Sacral_splanchnic_nerves is_a: UBERON:0003715 {source="FMA"} ! splanchnic nerve @@ -346864,6 +364014,8 @@ is_a: UBERON:0003715 {source="FMA"} ! splanchnic nerve id: UBERON:0018685 name: nursing stage def: "A mammalian developmental stage that covers the period from birth until weaning." [Bgee:AN] +subset: human_subset +subset: mouse_subset synonym: "suckling stage" EXACT [] is_a: UBERON:0000105 ! life cycle stage relationship: has_part UBERON:0007221 ! neonate stage @@ -346874,6 +364026,8 @@ relationship: part_of UBERON:0000092 ! post-embryonic stage id: UBERON:0018687 name: glial limiting membrane def: "The meshwork of astrocytic foot processes (glial end feet) covered by a basal lamina adjacent to the inner pial surface of the central nervous system." [http://neurolex.org/wiki/Nlx_subcell_100209] +subset: human_subset +subset: mouse_subset synonym: "glia limitans" EXACT OMO:0003011 [Wikipedia:Glia_limitans] xref: NIF_Subcellular:nlx_subcell_100209 xref: Wikipedia:Glia_limitans @@ -346918,6 +364072,7 @@ relationship: part_of UBERON:0018691 ! ventral side of post-anal tail [Term] id: UBERON:0018691 name: ventral side of post-anal tail +subset: mouse_subset is_a: UBERON:0034929 ! external soft tissue zone intersection_of: UBERON:0034929 ! external soft tissue zone intersection_of: in_ventral_side_of UBERON:0007812 ! post-anal tail @@ -346928,6 +364083,7 @@ relationship: part_of UBERON:0013235 ! ventrum [Term] id: UBERON:0018692 name: dorsal side of post-anal tail +subset: mouse_subset is_a: UBERON:0034929 ! external soft tissue zone intersection_of: UBERON:0034929 ! external soft tissue zone intersection_of: in_dorsal_side_of UBERON:0007812 ! post-anal tail @@ -346939,6 +364095,8 @@ relationship: part_of UBERON:0007812 ! post-anal tail id: UBERON:0018707 name: bladder organ def: "A membranous sac in animals that serves as the receptacle of a liquid or contains gas." [BTO:0000123] +subset: human_subset +subset: mouse_subset synonym: "bladder" NARROW [BTO:0000123] xref: BTO:0000123 is_a: UBERON:0000489 ! cavitated compound organ @@ -346950,6 +364108,8 @@ relationship: location_of UBERON:0000463 ! organism substance [Term] id: UBERON:0019042 name: reproductive system mucosa +subset: human_subset +subset: mouse_subset synonym: "genital mucosa" EXACT [BTO:0002439] xref: BTO:0002439 is_a: UBERON:0000344 ! mucosa @@ -346962,6 +364122,8 @@ relationship: part_of UBERON:0000990 ! reproductive system id: UBERON:0019143 name: intramuscular adipose tissue def: "Adipose tissue which is located throughout skeletal muscle and is responsible for the marbling seen in certain cuts of beef. In humans, excess accumulation of intramuscular fat is associated with insulin resistance and type 2 diabetes." [BTO:0004043] +subset: human_subset +subset: mouse_subset synonym: "intramuscular fat" RELATED [BTO:0004043] xref: BTO:0004043 is_a: UBERON:0001013 ! adipose tissue @@ -346972,6 +364134,8 @@ relationship: part_of UBERON:0014892 ! skeletal muscle organ, vertebrate [Term] id: UBERON:0019189 name: carotid artery endothelium +subset: human_subset +subset: mouse_subset synonym: "carotid endothelium" RELATED [BTO:0004626] synonym: "carotid epithelium" RELATED [] xref: BTO:0004626 @@ -346983,6 +364147,8 @@ relationship: part_of UBERON:0005396 ! carotid artery segment [Term] id: UBERON:0019190 name: mucous gland of lung +subset: human_subset +subset: mouse_subset synonym: "bronchial gland" EXACT [FMA:13119] synonym: "bronchial mucous gland" EXACT [FMA:13119] synonym: "peribronchial gland" EXACT [BTO:0004638] @@ -347000,6 +364166,8 @@ relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0019196 name: iliac artery endothelium +subset: human_subset +subset: mouse_subset xref: BTO:0004661 is_a: UBERON:0001917 ! endothelium of artery intersection_of: UBERON:0001986 ! endothelium @@ -347010,6 +364178,8 @@ relationship: part_of UBERON:0005609 ! iliac artery id: UBERON:0019197 name: dorsal nerve of penis def: "The deep terminal division of the pudendal nerve that runs along the dorsum of the penis and innervates the the corpus cavernosum penis, the prepuce and the glans penis." [http://medical-dictionary.thefreedictionary.com/dorsal%20nerve%20of%20penis, Wikipedia:Dorsal_nerve_of_the_penis] +subset: human_subset +subset: mouse_subset synonym: "dorsal nerve of penis" RELATED [Wikipedia:Dorsal_nerve_of_the_penis] synonym: "dorsal nerves of the penis" RELATED [Wikipedia:Dorsal_nerve_of_the_penis] synonym: "nervus dorsalis penis" EXACT OMO:0003011 [FMA:21869] @@ -347038,6 +364208,8 @@ relationship: part_of UBERON:0011390 ! pudendal nerve id: UBERON:0019198 name: dorsal nerve of clitoris def: "The deep terminal division of the pudendal nerve that runs along the dorsum of the clitoral shaft and innervates the the glans clitoris." [http://medical-dictionary.thefreedictionary.com/dorsal%20nerve%20of%20clitoris, Wikipedia:Dorsal_nerve_of_clitoris] +subset: human_subset +subset: mouse_subset synonym: "dorsal nerve of the clitoris" RELATED [Wikipedia:Dorsal_nerve_of_clitoris] synonym: "nervus dorsalis clitoridis" EXACT [FMA:21870] xref: FMA:21870 @@ -347059,6 +364231,8 @@ relationship: part_of UBERON:0011390 ! pudendal nerve [Term] id: UBERON:0019199 name: lateral side of chest +subset: human_subset +subset: mouse_subset synonym: "side of chest" EXACT [] xref: SCTID:182332004 is_a: UBERON:0000475 ! organism subdivision @@ -347068,6 +364242,8 @@ relationship: part_of UBERON:0001443 {source="FMA"} ! chest id: UBERON:0019200 name: skin of anterior chest def: "Zone of skin that is part of the anterior region of the chest." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anterior chest skin" EXACT [FMA:10461] synonym: "skin of anterior part of thorax" EXACT [FMA:10461] @@ -347083,6 +364259,8 @@ relationship: part_of UBERON:0016416 ! anterior chest id: UBERON:0019201 name: gemellus muscle def: "One of the two small muscular fasciculi, accessories to the tendon of the Obturator internus which is received into a groove between them." [Wikipedia:Inferior_gemellus_muscle, Wikipedia:Superior_gemellus_muscle] +subset: human_subset +subset: mouse_subset xref: EMAPA:36227 xref: FMA:22319 xref: SCTID:245021004 @@ -347095,6 +364273,8 @@ id: UBERON:0019202 name: inferior gemellus muscle def: "Gemellus muscle that arises from the upper part of the tuberosity of the ischium, immediately below the groove for the Obturator internus tendon. It blends with the lower part of the tendon of the Obturator internus, and is inserted with it into the medial surface of the greater trochanter." [Wikipedia:Inferior_gemellus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "gemellus inferior" EXACT [EMAPA:36228] synonym: "gemellus inferior" RELATED [Wikipedia:Inferior_gemellus_muscle] synonym: "gemellus inferior muscle" RELATED [Wikipedia:Inferior_gemellus_muscle] @@ -347115,6 +364295,8 @@ id: UBERON:0019203 name: superior gemellus muscle def: "The smaller of the two gemellus muscles that arises from the outer surface of the spine of the ischium, blends with the upper part of the tendon of the Obturator internus, and is inserted with it into the medial surface of the greater trochanter[WP]." [Wikipedia:Superior_gemellus_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cemellus superior" RELATED [Wikipedia:Superior_gemellus_muscle] synonym: "gemellus superior" EXACT [EMAPA:36229] synonym: "gemellus superior" RELATED [Wikipedia:Superior_gemellus_muscle] @@ -347138,6 +364320,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0019204 name: skin epithelium def: "Any region of epithelium that is part of a skin region." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: BTO:0004382 is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium @@ -347147,6 +364331,8 @@ relationship: part_of UBERON:0000014 ! zone of skin [Term] id: UBERON:0019206 name: tongue papilla epithelium +subset: human_subset +subset: mouse_subset xref: EMAPA:35869 xref: MA:0003178 is_a: UBERON:0002424 ! oral epithelium @@ -347159,6 +364345,8 @@ relationship: part_of UBERON:0001726 ! papilla of tongue id: UBERON:0019207 name: chorioretinal region def: "The part of the eye that consists of both the retina and the optic choroid." [http://orcid.org/0000-0002-6601-2165, UBERON:drseb] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "chorioretina" EXACT [] synonym: "choroid and retina" EXACT [] @@ -347177,6 +364365,8 @@ relationship: part_of UBERON:0010230 ! eyeball of camera-type eye id: UBERON:0019208 name: anterior pole of lens def: "The central point on the anterior surface of the lens." [http://www.medilexicon.com/medicaldictionary.php] +subset: human_subset +subset: mouse_subset synonym: "polus anterior (lens)" EXACT [FMA:58897] synonym: "polus anterior lentis" EXACT OMO:0003011 [] xref: FMA:58897 @@ -347188,6 +364378,8 @@ is_a: UBERON:0019210 ! pole of lens id: UBERON:0019210 name: pole of lens def: "A central point or region on the anterior or posterior surface of the lens." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "lens pole" EXACT [] synonym: "lens zone" EXACT [FMA:58067] synonym: "zone of lens" RELATED [FMA:58067] @@ -347201,6 +364393,8 @@ relationship: part_of UBERON:0000965 ! lens of camera-type eye id: UBERON:0019211 name: supcapsular region of anterior region of lens comment: See https://github.com/obophenotype/uberon/issues/599 +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: adjacent_to UBERON:0001804 ! capsule of lens @@ -347210,6 +364404,8 @@ relationship: part_of UBERON:0019208 ! anterior pole of lens id: UBERON:0019212 name: supcapsular region of posterior region of lens comment: See https://github.com/obophenotype/uberon/issues/599 +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: adjacent_to UBERON:0001804 ! capsule of lens @@ -347219,6 +364415,8 @@ relationship: part_of UBERON:0016459 ! posterior pole of lens id: UBERON:0019221 name: digit 1 or 5 def: "Either of the outermost digits in a five-digit autopod, or their phylogenetic equivalent." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "lateral digit" RELATED HUMAN_PREFERRED [] synonym: "outer digit" RELATED HUMAN_PREFERRED [] synonym: "outermost digit" RELATED HUMAN_PREFERRED [] @@ -347232,6 +364430,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/592" xsd: id: UBERON:0019222 name: digit 2, 3 or 4 def: "Any of the three medial digits in a five-digit autopod, or their phylogenetic equivalent." [UBERON:cjm] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "medial digit" RELATED HUMAN_PREFERRED [] synonym: "mesoaxial digit" RELATED HUMAN_PREFERRED [] @@ -347244,6 +364444,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/592" xsd: [Term] id: UBERON:0019231 name: manual digit 1 or 5 +subset: human_subset +subset: mouse_subset synonym: "lateral finger" RELATED HUMAN_PREFERRED [] synonym: "lateral manual digit" RELATED HUMAN_PREFERRED [] synonym: "outer manual digit" RELATED HUMAN_PREFERRED [] @@ -347258,6 +364460,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/592" xsd: [Term] id: UBERON:0019232 name: manual digit 2, 3 or 4 +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "medial manual digit" RELATED HUMAN_PREFERRED [] synonym: "mesoaxial manual digit" RELATED HUMAN_PREFERRED [] @@ -347273,6 +364477,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/592" xsd: [Term] id: UBERON:0019241 name: pedal digit 1 or 5 +subset: human_subset +subset: mouse_subset synonym: "lateral pedal digit" RELATED HUMAN_PREFERRED [] synonym: "lateral toe" RELATED HUMAN_PREFERRED [] synonym: "outer pedal digit" RELATED HUMAN_PREFERRED [] @@ -347287,6 +364493,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/592" xsd: [Term] id: UBERON:0019242 name: pedal digit 2, 3 or 4 +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "medial pedal digit" RELATED HUMAN_PREFERRED [] synonym: "mesoaxial pedal digit" RELATED HUMAN_PREFERRED [] @@ -347302,6 +364510,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/592" xsd: [Term] id: UBERON:0019243 name: skin crease +subset: human_subset +subset: mouse_subset synonym: "skin groove" RELATED [] xref: SCTID:280385004 is_a: UBERON:0004121 ! ectoderm-derived structure @@ -347312,6 +364522,8 @@ relationship: part_of UBERON:0000014 ! zone of skin [Term] id: UBERON:0019246 name: palmar skin crease +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "skin crease of palmar part of manus" EXACT [] xref: SCTID:244159001 @@ -347324,6 +364536,8 @@ relationship: part_of UBERON:0008878 ! palmar part of manus [Term] id: UBERON:0019247 name: plantar skin crease +subset: human_subset +subset: mouse_subset synonym: "skin crease of plantar part of pes" EXACT [] xref: SCTID:244192007 is_a: UBERON:0019243 ! skin crease @@ -347335,12 +364549,16 @@ relationship: part_of UBERON:0008338 ! plantar part of pes [Term] id: UBERON:0019248 name: early embryo +subset: human_subset +subset: mouse_subset xref: EMAPA:36032 is_a: UBERON:0000922 ! embryo [Term] id: UBERON:0019249 name: 2-cell stage embryo +subset: human_subset +subset: mouse_subset synonym: "2-cell embryo" RELATED [EMAPA:16036] synonym: "two-cell embryo" RELATED [EMAPA:16036] xref: EMAPA:16036 @@ -347352,6 +364570,8 @@ relationship: existence_starts_and_ends_during UBERON:0007232 ! 2 cell stage [Term] id: UBERON:0019250 name: 4-8 cell stage embryo +subset: human_subset +subset: mouse_subset synonym: "4-8 cell embryo" RELATED [EMAPA:16037] synonym: "four-to-eight cell embryo" RELATED [EMAPA:16037] xref: EMAPA:16037 @@ -347365,6 +364585,8 @@ relationship: existence_starts_during UBERON:0007233 ! 4 cell stage [Term] id: UBERON:0019251 name: 4-cell stage embryo +subset: human_subset +subset: mouse_subset synonym: "4-cell embryo" RELATED [EMAPA:31864] synonym: "four-cell embryo" RELATED [EMAPA:31864] xref: EMAPA:31864 @@ -347376,6 +364598,8 @@ relationship: existence_starts_and_ends_during UBERON:0007233 ! 4 cell stage [Term] id: UBERON:0019252 name: 8-cell stage embryo +subset: human_subset +subset: mouse_subset synonym: "8-cell embryo" RELATED [EMAPA:31865] synonym: "eight-cell embryo" RELATED [EMAPA:31865] xref: EMAPA:31865 @@ -347387,6 +364611,8 @@ relationship: existence_starts_and_ends_during UBERON:0007236 ! 8 cell stage [Term] id: UBERON:0019253 name: upper secondary incisor tooth +subset: human_subset +subset: mouse_subset synonym: "maxillary secondary incisor tooth" EXACT [FMA:55712] synonym: "upper permanent incisor" EXACT [] synonym: "upper permanent incisor tooth" EXACT [FMA:55712] @@ -347403,6 +364629,8 @@ relationship: part_of UBERON:0007774 ! secondary dentition [Term] id: UBERON:0019254 name: upper eyelash +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "eyelash of upper eyelid" EXACT [FMA:59408] synonym: "hair of upper eyelid" RELATED [] @@ -347419,6 +364647,8 @@ relationship: part_of UBERON:0001712 ! upper eyelid [Term] id: UBERON:0019255 name: lower eyelash +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "eyelash of lower eyelid" EXACT [FMA:59409] synonym: "hair of lower eyelid" RELATED [] @@ -347437,6 +364667,8 @@ id: UBERON:0019258 name: white matter of hindbrain def: "A white matter that is part of the hindbrain." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: DHBA:10668 xref: FMA:268636 is_a: UBERON:0003544 ! brain white matter @@ -347450,6 +364682,8 @@ id: UBERON:0019261 name: white matter of forebrain def: "A white matter that is part of the forebrain." [OBOL:automatic] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: DHBA:10557 xref: FMA:268634 is_a: UBERON:0003544 ! brain white matter @@ -347462,6 +364696,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0019262 name: white matter of myelencephalon def: "A white matter that is part of the myelencephalon." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "myelencephalic white matter" EXACT [HBA:MYWM] xref: HBA:9298 is_a: UBERON:0019258 ! white matter of hindbrain @@ -347473,6 +364709,8 @@ relationship: part_of UBERON:0005290 ! myelencephalon id: UBERON:0019263 name: gray matter of hindbrain subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "gray matter of the hindbrain" EXACT [DHBA:HGM] xref: DHBA:10654 xref: FMA:268630 @@ -347486,6 +364724,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0019264 name: gray matter of forebrain subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: DHBA:10157 xref: FMA:268608 is_a: UBERON:0003528 ! brain gray matter @@ -347498,6 +364738,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0019267 name: gray matter of midbrain subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: DHBA:10649 xref: FMA:83913 is_a: UBERON:0003528 ! brain gray matter @@ -347509,6 +364751,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0019269 name: gray matter of diencephalon +subset: human_subset +subset: mouse_subset xref: FMA:83912 is_a: UBERON:0019264 ! gray matter of forebrain intersection_of: UBERON:0002020 ! gray matter @@ -347518,6 +364762,8 @@ relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0019272 name: mesomere 1 +subset: human_subset +subset: mouse_subset synonym: "mesomere M1" EXACT [EHDAA2:0004353] xref: DHBA:12316 xref: DMBA:16650 @@ -347527,6 +364773,8 @@ is_a: UBERON:0014776 ! midbrain neuromere [Term] id: UBERON:0019274 name: mesomere 2 +subset: human_subset +subset: mouse_subset synonym: "mesomere 2 (preisthmus or caudal midbrain)" EXACT [DMBA:m2] synonym: "mesomere M2" EXACT [EHDAA2:0004354] xref: DHBA:12317 @@ -347538,6 +364786,8 @@ is_a: UBERON:0014776 ! midbrain neuromere id: UBERON:0019275 name: uncinate fasciculus of the forebrain def: "A fiber pathway in the cerebral white matter that connects anterior portions of the temporal lobe with the inferior frontal gyrus and the middle frontal gyrus. It is not readily distinguished in myelin-stained cross-sections (adapted from Brain Info)." [NLX:98733] +subset: human_subset +subset: mouse_subset synonym: "uncinate fasciculus of cerebral hemisphere" RELATED [NeuroNames:1444] xref: HBA:9284 xref: neuronames:1444 @@ -347550,6 +364800,8 @@ relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencepha id: UBERON:0019278 name: inferior rostral gyrus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: BIRNLEX:1447 xref: DHBA:12130 xref: HBA:4900 @@ -347561,6 +364813,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0019279 name: superior rostral gyrus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "superior rostral gyrus" EXACT [BIRNLEX:1311] xref: BIRNLEX:1311 xref: DHBA:12129 @@ -347573,6 +364827,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0019280 name: rostral gyrus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: DHBA:146034876 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0016525 {source="DHBA"} ! frontal lobe @@ -347581,6 +364837,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0019283 name: lateral longitudinal stria +subset: human_subset +subset: mouse_subset synonym: "lateral white stria of lancisi" EXACT [FMA:62439] xref: DHBA:12064 xref: FMA:62439 @@ -347594,6 +364852,8 @@ relationship: part_of UBERON:0002665 {source="FMA"} ! supracallosal gyrus [Term] id: UBERON:0019284 name: rhombomere 9 +subset: human_subset +subset: mouse_subset synonym: "r9" EXACT OMO:0003000 [DMBA:r9] xref: DMBA:17476 is_a: UBERON:0001892 ! rhombomere @@ -347601,6 +364861,8 @@ is_a: UBERON:0001892 ! rhombomere [Term] id: UBERON:0019285 name: rhombomere 10 +subset: human_subset +subset: mouse_subset synonym: "r10" EXACT OMO:0003000 [DMBA:r10] xref: DMBA:17538 is_a: UBERON:0001892 ! rhombomere @@ -347608,6 +364870,8 @@ is_a: UBERON:0001892 ! rhombomere [Term] id: UBERON:0019286 name: rhombomere 11 +subset: human_subset +subset: mouse_subset synonym: "r11" EXACT OMO:0003000 [DMBA:r11] xref: DMBA:17596 is_a: UBERON:0001892 ! rhombomere @@ -347615,6 +364879,8 @@ is_a: UBERON:0001892 ! rhombomere [Term] id: UBERON:0019289 name: accessory olfactory bulb external plexiform layer +subset: human_subset +subset: mouse_subset synonym: "AOB, outer plexiform layer" EXACT [DMBA:AOPl] xref: DMBA:15965 xref: EMAPA:35107 @@ -347625,6 +364891,8 @@ relationship: part_of UBERON:0004069 {source="MA"} ! accessory olfactory bulb [Term] id: UBERON:0019290 name: accessory olfactory bulb internal plexiform layer +subset: human_subset +subset: mouse_subset synonym: "AOB, internal plexiform layer" EXACT [DMBA:AIPl] xref: DMBA:15962 xref: EMAPA:35110 @@ -347635,6 +364903,8 @@ relationship: part_of UBERON:0004069 {source="MA"} ! accessory olfactory bulb [Term] id: UBERON:0019291 name: white matter of metencephalon +subset: human_subset +subset: mouse_subset xref: FMA:83939 xref: HBA:9287 is_a: UBERON:0019258 ! white matter of hindbrain @@ -347645,6 +364915,8 @@ relationship: part_of UBERON:0001895 ! metencephalon [Term] id: UBERON:0019292 name: white matter of pons +subset: human_subset +subset: mouse_subset xref: FMA:83940 is_a: UBERON:0014891 ! brainstem white matter is_a: UBERON:0019291 ! white matter of metencephalon @@ -347656,6 +364928,8 @@ relationship: part_of UBERON:0000988 ! pons id: UBERON:0019293 name: white matter of pontine tegmentum alt_id: UBERON:0025819 +subset: human_subset +subset: mouse_subset synonym: "pontine white matter tracts" EXACT [HBA:PoWM] synonym: "predominantly white regional part of pontine tegmentum" EXACT [BIRNLEX:1069] synonym: "substantia alba tegmenti pontis" EXACT [FMA:TA] @@ -347672,6 +364946,8 @@ relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:0019294 name: commissure of telencephalon +subset: human_subset +subset: mouse_subset synonym: "telencephalic commissures" EXACT [HBA:TELCom] xref: HBA:9220 is_a: UBERON:0005970 ! brain commissure @@ -347682,6 +364958,8 @@ relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0019295 name: caudal intralaminar nuclear group +subset: human_subset +subset: mouse_subset synonym: "caudal group of intralaminar nuclei" EXACT [HBA:ILc] synonym: "ILc" RELATED OMO:0003000 [HBA:ILc] synonym: "posterior group of intralaminar nuclei" EXACT [DHBA:PILN] @@ -347696,6 +364974,8 @@ relationship: part_of UBERON:0002733 ! intralaminar nuclear group [Term] id: UBERON:0019303 name: occipital sulcus +subset: human_subset +subset: mouse_subset synonym: "occipital lobe sulcus" EXACT [] xref: HBA:9386 xref: NCIT:C33196 @@ -347709,6 +364989,8 @@ relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0019304 name: sensory organ epithelium +subset: human_subset +subset: mouse_subset xref: EMAPA:35952 xref: MA:0003174 is_a: UBERON:0000483 ! epithelium @@ -347719,6 +365001,8 @@ relationship: part_of UBERON:0000020 ! sense organ [Term] id: UBERON:0019306 name: nose epithelium +subset: human_subset +subset: mouse_subset xref: EMAPA:35958 xref: MA:0003171 is_a: UBERON:0010371 ! ecto-epithelium @@ -347731,6 +365015,8 @@ relationship: part_of UBERON:0000004 ! nose id: UBERON:0019307 name: epithelium of external nose def: "Epithelial layer that is part of the external part of the nose." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "epithelium of skin of external nose" EXACT [FMA:63143] xref: FMA:63143 is_a: UBERON:0012329 {source="FMA"} ! keratinized stratified squamous epithelium @@ -347743,6 +365029,8 @@ relationship: part_of UBERON:0007827 ! external nose id: UBERON:0019308 name: septohypothalamic nucleus def: "A group of cells located between the lateral septal nucleus and the anterior commissure in the mouse ( Paxinos-2001 ). Some authors regard it as part of the lateral septal nucleus ( Swanson-1998 )." [neuronames:1175] +subset: human_subset +subset: mouse_subset synonym: "SHy" RELATED OMO:0003000 [DHBA:SHy] xref: DHBA:13033 xref: DMBA:15761 @@ -347753,6 +365041,8 @@ relationship: part_of UBERON:0002663 {source="DHBA"} ! septal nuclear complex [Term] id: UBERON:0019310 name: glossopharyngeal nerve root +subset: human_subset +subset: mouse_subset synonym: "glossopharyngeal nerve root" EXACT [BIRNLEX:1533] xref: BIRNLEX:1533 xref: DHBA:12887 @@ -347768,6 +365058,8 @@ relationship: part_of UBERON:0001896 ! medulla oblongata id: UBERON:0019311 name: root of olfactory nerve def: "The initial segment of an olfactory nerve, leaving the central nervous system." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "olfactory nerve root" EXACT [BIRNLEX:1632] xref: BIRNLEX:1632 is_a: UBERON:0002211 ! nerve root @@ -347778,6 +365070,8 @@ relationship: extends_fibers_into UBERON:0001579 ! olfactory nerve [Term] id: UBERON:0019312 name: ventrolateral nucleus of solitary tract +subset: human_subset +subset: mouse_subset synonym: "nucleus of the solitary tract, ventrolateral part" RELATED [BIRNLEX:2664] synonym: "ventrolateral subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:2664] synonym: "ventrolateral subnucleus of solitary tract, left" EXACT [HBA:SolVL] @@ -347791,6 +365085,8 @@ is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract [Term] id: UBERON:0019314 name: epifascicular nucleus +subset: human_subset +subset: mouse_subset xref: DHBA:12649 xref: HBA:9551 xref: neuronames:1118 @@ -347801,6 +365097,8 @@ relationship: part_of UBERON:0005290 {source="HBA"} ! myelencephalon id: UBERON:0019315 name: meibum def: "An oily substance that prevents evaporation of the eye's tear film." [PMID:20664693] +subset: human_subset +subset: mouse_subset synonym: "tarsal gland secretion" RELATED [] is_a: UBERON:0001866 ! sebum intersection_of: UBERON:0001866 ! sebum @@ -347816,6 +365114,8 @@ property_value: location_notes "part of surface lipid layer of tear film" xsd:st id: UBERON:0019319 name: exocrine gland of integumental system def: "An exocrine gland that is part of a integumental system." [GOC:dos, http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "integumental exocrine gland" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "integumental system exocrine gland" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0002365 ! exocrine gland @@ -347828,6 +365128,8 @@ relationship: part_of UBERON:0002416 ! integumental system id: UBERON:0019320 name: precordial region def: "A subdivision of the trunk that is comprised of the epigastrium and the anterior lower thorax." [http://orcid.org/0000-0001-9114-8737] +subset: human_subset +subset: mouse_subset synonym: "precordial region" EXACT [FMA:12824] synonym: "precordium" EXACT [FMA:12824] xref: FMA:12824 @@ -347839,6 +365141,7 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk id: UBERON:0019324 name: intraorbital lacrimal gland def: "A lacrimal gland located superficially at the lateral canthus, where both the lacrimal gland and Harderian gland ducts open." [ISBN:0123813611, MGI:anna] +subset: mouse_subset xref: EMAPA:36578 xref: MA:0003109 xref: NCIT:C60574 @@ -347850,6 +365153,7 @@ relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0019325 name: exorbital lacrimal gland def: "A lacrimal gland located subcutaneously at the anteroventral base of the ear adjacent to the parotid gland." [ISBN:0123813611, MGI:anna] +subset: mouse_subset synonym: "exorbital gland" RELATED [] synonym: "exorbital lacrimal gland" EXACT [MGI:anna] synonym: "extraorbital gland" RELATED [] @@ -347866,6 +365170,8 @@ property_value: taxon_notes "more than 10% of rat exorbital gland appears to be id: UBERON:0019326 name: lobe of lacrimal gland def: "An anatomical lobe that is part of a lacrimal gland." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "lacrimal gland zone" EXACT [FMA:59381] synonym: "zone of lacrimal gland" EXACT [FMA:59381] xref: FMA:59381 @@ -347877,6 +365183,8 @@ property_value: taxon_notes "In humans the lacrimal gland consists of two contig id: UBERON:0019327 name: orbital lobe of lacrimal gland def: "Larger of the two lacrimal gland lobes located superficially." [ISBN:0123813611] +subset: human_subset +subset: mouse_subset synonym: "orbital part of lacrimal gland" EXACT [FMA:59383] synonym: "pars orbitalis (glandula lacrimalis)" EXACT [FMA:59383] synonym: "pars orbitalis glandulae lacrimalis" EXACT OMO:0003011 [FMA:59383, FMA:TA] @@ -347888,6 +365196,8 @@ is_a: UBERON:0019326 {source="ISBN:0123813611"} ! lobe of lacrimal gland id: UBERON:0019328 name: palpebral lobe of lacrimal gland def: "Smaller of the two lacrimal gland lobes located at the eyelid." [ISBN:0123813611] +subset: human_subset +subset: mouse_subset synonym: "palpebral part of lacrimal gland" EXACT [FMA:59384] synonym: "pars palpebralis glandulae lacrimalis" EXACT OMO:0003011 [FMA:59384, FMA:TA] xref: FMA:59384 @@ -347899,6 +365209,8 @@ id: UBERON:0020358 name: accessory XI nerve nucleus def: "The spinal accessory nucleus lies within the cervical spinal cord (C1-C5) in the ventral horn. The nucleus ambiguus is classically said to provide the 'cranial component' of the accessory nerve. However, the very existence of this cranial component has been recently questioned and seen as contributing exclusively to the vagus nerve. The terminology continues to be used in describing both human anatomy, and that of other animals." [Wikipedia:Spinal_accessory_nucleus] comment: See also: Wikipedia:Spinal_accessory_nucleus +subset: human_subset +subset: mouse_subset synonym: "accessory neural nucleus" EXACT [FMA:83965] synonym: "accessory nucleus of anterior column of spinal cord" RELATED [NeuroNames:2003] synonym: "nucleus accessorius columnae anterioris medullae spinalis" RELATED OMO:0003011 [NeuroNames:2003] @@ -347921,6 +365233,8 @@ relationship: part_of UBERON:0001896 {source="MA"} ! medulla oblongata id: UBERON:0020550 name: auricular blood vessel def: "A blood vessel that supplies or drains an ear." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: EMAPA:37386 {source="MA:th"} xref: MA:0001226 is_a: UBERON:0001981 ! blood vessel @@ -347932,6 +365246,8 @@ relationship: part_of RO:0002577 ! system [Term] id: UBERON:0022229 name: posterior amygdaloid nucleus +subset: human_subset +subset: mouse_subset synonym: "posterior amygdalar nucleus" EXACT [ABA:PA] xref: EMAPA:35694 xref: MA:0002928 @@ -347942,6 +365258,8 @@ relationship: part_of UBERON:0001876 {source="MA"} ! amygdala [Term] id: UBERON:0022230 name: retrohippocampal region +subset: human_subset +subset: mouse_subset synonym: "retrohippocampal cortex" EXACT [MA:0000920] xref: EMAPA:35745 xref: MA:0000920 @@ -347954,6 +365272,8 @@ relationship: part_of UBERON:0002421 {source="ABA"} ! hippocampal formation [Term] id: UBERON:0022232 name: secondary visual cortex +subset: human_subset +subset: mouse_subset xref: EMAPA:35758 xref: MA:0000915 is_a: UBERON:0035014 {source="cjm"} ! functional part of brain @@ -347966,6 +365286,8 @@ relationship: part_of UBERON:0002021 {source="MA"} ! occipital lobe [Term] id: UBERON:0022234 name: medial longitudinal stria +subset: human_subset +subset: mouse_subset synonym: "medial longitudinal stria" RELATED [NeuroNames:175] synonym: "medial longitudinal stria of Lancisi" RELATED [NeuroNames:175] synonym: "medial longitudinal stria of lancisi" EXACT [FMA:67956] @@ -347991,6 +365313,8 @@ relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencepha [Term] id: UBERON:0022235 name: peduncle of diencephalon +subset: human_subset +subset: mouse_subset synonym: "diencephalon peduncle" EXACT [FMA:62444] xref: FMA:62444 is_a: UBERON:0003931 ! diencephalic white matter @@ -348002,6 +365326,8 @@ relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0022236 name: peduncle of thalamus +subset: human_subset +subset: mouse_subset synonym: "thalamic peduncle" EXACT [] xref: MBA:365 xref: neuronames:1982 @@ -348013,6 +365339,8 @@ relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus [Term] id: UBERON:0022237 name: anterior thalamic peduncle +subset: human_subset +subset: mouse_subset synonym: "anterior peduncle" EXACT [FMA:62074] synonym: "frontal peduncle" EXACT [FMA:62074] synonym: "frontal thalamic peduncle" EXACT [FMA:62074] @@ -348031,6 +365359,8 @@ relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencepha [Term] id: UBERON:0022241 name: superior thalamic peduncle +subset: human_subset +subset: mouse_subset synonym: "centroparietal peduncle" EXACT [FMA:62075] synonym: "centroparietal thalamic peduncle" EXACT [FMA:62075] synonym: "middle thalamic peduncle" EXACT [FMA:62075] @@ -348044,6 +365374,8 @@ relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus [Term] id: UBERON:0022242 name: inferior thalamic peduncle +subset: human_subset +subset: mouse_subset synonym: "inferior peduncle" EXACT [FMA:62076] synonym: "pedunculus inferior thalami" EXACT OMO:0003011 [FMA:62076, FMA:TA] synonym: "pedunculus thalami caudalis" EXACT OMO:0003011 [FMA:62076, FMA:TA] @@ -348061,6 +365393,8 @@ relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus [Term] id: UBERON:0022243 name: posterior thalamic peduncle +subset: human_subset +subset: mouse_subset synonym: "occipital peduncle" EXACT [FMA:62077] synonym: "occipital thalamic peduncle" EXACT [FMA:62077] synonym: "pedunculus ventrocaudalis thalami" EXACT OMO:0003011 [FMA:62077, FMA:TA] @@ -348074,6 +365408,8 @@ relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus [Term] id: UBERON:0022244 name: anterior orbital gyrus +subset: human_subset +subset: mouse_subset synonym: "AOrG" RELATED OMO:0003000 [HBA:AOrG] xref: FMA:256196 xref: HBA:4053 @@ -348084,6 +365420,8 @@ is_a: UBERON:0007193 {source="FMA"} ! orbital gyrus id: UBERON:0022246 name: superior longitudinal fasciculus def: "The superior longitudinal fasciculus (also called the superior longitudinal fascicle or SLF) is a pair of long bi-directional bundles of neurons connecting the front and the back of the cerebrum. Each association fiber bundle is lateral to the centrum ovale of a cerebral hemisphere and connects the frontal, occipital, parietal, and temporal lobes. The neurons pass from the frontal lobe through the operculum to the posterior end of the lateral sulcus where numerous neurons radiate into the occipital lobe and other neurons turn downward and forward around the putamen and radiate to anterior portions of the temporal lobe." [Wikipedia:Superior_longitudinal_fasciculus] +subset: human_subset +subset: mouse_subset synonym: "superior longitudinal fascicle" RELATED [Wikipedia:Superior_longitudinal_fasciculus] xref: DHBA:10592 xref: FMA:77631 @@ -348097,6 +365435,8 @@ relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencepha [Term] id: UBERON:0022247 name: forebrain ipsilateral fiber tracts +subset: human_subset +subset: mouse_subset synonym: "FIFT" RELATED OMO:0003000 [DHBA:FIFT] xref: DHBA:10568 is_a: UBERON:0005838 ! fasciculus of brain @@ -348105,6 +365445,8 @@ relationship: part_of UBERON:0019261 {source="DHBA"} ! white matter of forebrain [Term] id: UBERON:0022248 name: cerebral nerve fasciculus +subset: human_subset +subset: mouse_subset synonym: "cerebral fascicle" EXACT [FMA:260712] synonym: "cerebral fasciculus" EXACT [FMA:260712] synonym: "nerve fascicle of telencephalon" EXACT [] @@ -348119,6 +365461,8 @@ relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0022250 name: subcallosal fasciculus +subset: human_subset +subset: mouse_subset synonym: "fasciculus occipitofrontalis superior" EXACT OMO:0003011 [FMA:77634, FMA:TA] synonym: "fasciculus subcallosus" EXACT OMO:0003011 [FMA:77637, FMA:TA] synonym: "subcallosal bundle" RELATED [NeuroNames:2141] @@ -348140,6 +365484,8 @@ relationship: dubious_for_taxon NCBITaxon:9606 {source="WP"} ! Homo sapiens id: UBERON:0022252 name: precentral sulcus def: "The precentral sulcus lies parallel to, and in front of, the central sulcus. (A sulcus is one of the prominent grooves on the surface of the human brain. ) The precentral sulcus divides the inferior, middle, and superior frontal gyri from the precentral gyrus. In the majority of brains, the precentral sulcus is divided into two parts: the inferior precentral sulcus and the superior precentral sulcus. However, the precentral sulcus may also be divided into three parts or form one continuous sulcus." [Wikipedia:Precentral_sulcus] +subset: human_subset +subset: mouse_subset xref: DHBA:10628 xref: FMA:83800 xref: HBA:9355 @@ -348154,6 +365500,8 @@ relationship: part_of UBERON:0014639 {source="HBA"} ! frontal sulcus id: UBERON:0022254 name: ventral thalamic fasciculus def: "The thalamic fasciculus is a component of the subthalamus. It is sometimes considered synonymous with 'field H1 of Forel'. Nerve fibres forming a composite bundle containing cerebellothalamic (crossed) and pallidothalamic (uncrossed) fibres that is insinuated between the thalamus and zona incerta. The thalamic fasciculus consists of the joint fibers of the ansa lenticularis and the lenticular fasciculus, coming from different portions of the medial globus pallidus, before they jointly enter the ventral lateral nucleus of the thalamus." [Wikipedia:Thalamic_fasciculus] +subset: human_subset +subset: mouse_subset synonym: "area subthalamica tegmentalis, pars dorsomedialis" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "area tegmentalis H1" EXACT OMO:0003011 [FMA:62065, FMA:TA] synonym: "area tegmentalis, pars dorsalis" EXACT OMO:0003011 [FMA:62065, FMA:TA] @@ -348186,6 +365534,8 @@ relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fib id: UBERON:0022256 name: subthalamic fasciculus def: "The subthalamic fasciculus is a tract which connects the subthalamic nucleus and the globus pallidus. It is a bidirectional connection between the GP and the subthalamic nucleus, including (1) fibers running from the GPe to the subthalamic nucleus, and (2) fibers running from the STN back to the GP." [Wikipedia:Subthalamic_fasciculus] +subset: human_subset +subset: mouse_subset synonym: "fasciculus subthalamicus" RELATED OMO:0003011 [NeuroNames:2280] synonym: "subthalamic fascicle" RELATED [NeuroNames:2280] synonym: "subthalamic fasciculus" RELATED [NeuroNames:2280] @@ -348204,6 +365554,8 @@ relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fib [Term] id: UBERON:0022258 name: endolemniscal nucleus +subset: human_subset +subset: mouse_subset synonym: "EL" RELATED OMO:0003000 [HBA:EL] xref: DHBA:12648 xref: FMA:77099 @@ -348215,6 +365567,8 @@ relationship: part_of UBERON:0005290 {source="HBA"} ! myelencephalon [Term] id: UBERON:0022259 name: white matter radiation +subset: human_subset +subset: mouse_subset synonym: "neuraxis radiation" EXACT [FMA:83859] synonym: "radiation of neuraxis" EXACT [FMA:83859] xref: FMA:83859 @@ -348223,6 +365577,8 @@ is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0022260 name: radiation of cerebral hemisphere +subset: human_subset +subset: mouse_subset synonym: "cerebral hemisphere radiation" EXACT [FMA:61940] xref: FMA:61940 is_a: UBERON:0002437 ! cerebral hemisphere white matter @@ -348236,6 +365592,8 @@ relationship: part_of UBERON:0002437 ! cerebral hemisphere white matter id: UBERON:0022262 name: auditory radiation def: "The acoustic radiations or auditory radiations are structures found in the brain, in the ventral cochlear pathway, a part of the auditory system. Lesions to the auditory radiations could be a cause of cortical deafness." [Wikipedia:Acoustic_radiation] +subset: human_subset +subset: mouse_subset synonym: "acoustic radiation" EXACT [FMA:62413] synonym: "auditory radiation" RELATED [Wikipedia:Acoustic_radiation] synonym: "auditory radiations" RELATED [Wikipedia:Acoustic_radiation] @@ -348255,6 +365613,8 @@ id: UBERON:0022264 name: optic radiation def: "The optic radiation (also known as the geniculo-calcarine tract or as the geniculostriate pathway) is a collection of axons from relay neurons in the lateral geniculate nucleus of the thalamus carrying visual information to the visual cortex (also called striate cortex) along the calcarine fissure. There is one such tract on each side of the brain." [Wikipedia:Optic_radiation] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "archambault%27s loop" RELATED [Wikipedia:Optic_radiation] synonym: "genicula-celcarine tract" RELATED [Wikipedia:Optic_radiation] synonym: "geniculo-calcarine tract" RELATED [Wikipedia:Optic_radiation] @@ -348282,6 +365642,8 @@ id: UBERON:0022268 name: planum temporale def: "The planum temporale is the cortical area just posterior to the auditory cortex within the Sylvian fissure. It is a triangular region which forms the heart of Wernicke's area, one of the most important functional areas for language. The planum temporale shows a significant asymmetry. In 65% of all individuals the left planum temporale appears to be more developed, while the right planum temporale is more developed in only 10%. In some peoplebs brains, the planum temporale is more than five times larger on the left than on the right, making it the most asymmetrical structure in the brain. This greater size of the left planum temporale compared with the right is already present in the foetus, where it can be observed starting from the 31st week of gestation. This observation strengthens the hypothesis of a genetic predisposition for brain asymmetry." [http://neuro.imm.dtu.dk/wiki/Planum_temporale, Wikipedia:Planum_temporale] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "PLT" RELATED OMO:0003000 [HBA:PLT] xref: DHBA:12145 xref: HBA:4171 @@ -348299,6 +365661,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0022271 name: corticopontine fibers def: "Corticopontine fibers, commonly referred to as corticobulbar fibers, are projections from the cerebral cortex to the pontine nuclei. Depending upon the lobe of origin, they can be classified as frontopontine fibers, parietopontine fibers, temporopontine fibers and occipitopontine fibers. They are motor fibers that stretch from the precentral gyrus (motor strip) to the nuclei of cranial nerves V (trigenimal), VII (facial) and XII (hypoglossal). These fibers run alongside the corticospinal fibers." [Wikipedia:Corticopontine_fibers] +subset: human_subset +subset: mouse_subset synonym: "cortico-pontine fibers" EXACT [HBA:cpn] synonym: "cortico-pontine fibers, pontine part" EXACT [DHBA:cpn] synonym: "corticopontine" RELATED [Wikipedia:Corticopontine_fibers] @@ -348323,6 +365687,8 @@ relationship: part_of UBERON:0019293 {source="HBA"} ! white matter of pontine te id: UBERON:0022272 name: corticobulbar tract def: "The corticobulbar (or corticonuclear) tract is a white matter pathway connecting the cerebral cortex to the brainstem. The term 'bulbar' refers to the brainstem, as 'bulb' was a historical term meaning the area currently called the brainstem. The 'bulb' is an archaic term for the medulla oblongata. In clinical usage, it includes the pons as well." [Wikipedia:Corticobulbar_tract] +subset: human_subset +subset: mouse_subset synonym: "bulbar" RELATED [Wikipedia:Corticobulbar_tract] synonym: "cbu-h" RELATED OMO:0003000 [DHBA:cbu-h] synonym: "cortico-bulbar tract" RELATED [Wikipedia:Corticobulbar_tract] @@ -348346,6 +365712,8 @@ relationship: part_of UBERON:0036224 ! corticobulbar and corticospinal tracts id: UBERON:0022273 name: lacrimal lake def: "A small cistern-like area of the conjunctiva at the medial angle of the eye, in which the tears collect after bathing the front surface of the eyeball and the conjunctival sac." [MGI:anna] +subset: human_subset +subset: mouse_subset synonym: "lacrymal lake" EXACT [MGI:anna] synonym: "lacus lacrimalis" EXACT OMO:0003011 [] xref: FMA:59402 @@ -348359,6 +365727,8 @@ relationship: part_of UBERON:0001811 ! conjunctiva id: UBERON:0022274 name: lacrimal papilla def: "A small conical elevation at the basal angle of the lacrimal lake." [Wikipedia:Lacrimal_papilla] +subset: human_subset +subset: mouse_subset synonym: "papilla lacrimalis" EXACT OMO:0003011 [Wikipedia:Lacrimal_papilla] xref: FMA:59407 xref: SCTID:362533003 @@ -348371,6 +365741,8 @@ relationship: part_of UBERON:0001850 ! lacrimal drainage system id: UBERON:0022275 name: colic flexure def: "A sharp bend between consecutive segments of the colon." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "flexura coli" EXACT [FMA:14555] xref: FMA:14555 xref: SCTID:245426004 @@ -348382,6 +365754,8 @@ id: UBERON:0022276 name: splenic flexure of colon def: "The splenic (or left colic) flexure is a sharp bend between the transverse and the descending colon in the left upper quadrant of humans. The left colic flexure is near the spleen, and hence called the splenic flexure. There are two colic flexures in the transverse colon — the other being the hepatic flexure in the right upper quadrant." [Wikipedia:Splenic_flexure] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "flexura coli splenica" EXACT OMO:0003011 [FMA:TA] synonym: "left colic flexure" EXACT [FMA:14551] synonym: "left colic flexure" RELATED [Wikipedia:Splenic_flexure] @@ -348408,6 +365782,8 @@ id: UBERON:0022277 name: hepatic flexure of colon def: "Hepatic (or the right colic) flexure is the sharp bend between the ascending and the transverse colon. The right colic flexure is adjacent to the liver, and is therefore also known as the hepatic flexure. Thus, the left colic flexure is also known as the splenic flexure (as it is close to the spleen). The hepatic flexure lies in the right upper quadrant of the abdomen in humans." [Wikipedia:Hepatic_flexure] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "flexura coli heaptica" EXACT OMO:0003011 [FMA:TA] synonym: "hepatic flexure" EXACT [FMA:14550] synonym: "hepatic flexure of colon" EXACT [FMA:14550] @@ -348433,6 +365809,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l id: UBERON:0022278 name: nucleus of pudendal nerve def: "A nucleus in the ventral part of the anterior horn of the sacral region of the spinal cord that is the origin of the pudendal nerve." [Wikipedia:Onuf%27s_nucleus, Wikipedia:Pudendal_nerve#Nucleus] +subset: human_subset +subset: mouse_subset synonym: "nucleus of Onuf" EXACT [FMA:257031] synonym: "Onuf's nucleus" EXACT [FMA:77024] synonym: "pudendal neural nucleus" EXACT [FMA:77024] @@ -348453,6 +365831,8 @@ property_value: structure_notes "The neurons in Onuf's nucleus are motoneurons, [Term] id: UBERON:0022279 name: strand of hair on external ear +subset: human_subset +subset: mouse_subset synonym: "hair of external ear" EXACT [FMA:53671] synonym: "hair of tragus" EXACT [FMA:53671] synonym: "tragus hair" EXACT [FMA:53671] @@ -348465,6 +365845,8 @@ relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0022280 name: epithelium of crypt of Lieberkuhn of small intestine +subset: human_subset +subset: mouse_subset synonym: "epithelium of small intestinal crypt of Lieberkuhn" EXACT [FMA:63243] synonym: "wall of small intestinal crypt of Lieberkuhn" RELATED [FMA:63243] xref: FMA:63243 @@ -348478,6 +365860,8 @@ relationship: part_of UBERON:0001241 ! crypt of Lieberkuhn of small intestine id: UBERON:0022281 name: epithelium of crypt of Lieberkuhn of large intestine subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:63628 is_a: UBERON:0001278 ! epithelium of large intestine is_a: UBERON:0011184 ! epithelium of crypt of Lieberkuhn @@ -348490,6 +365874,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0022282 name: secretion of Harderian gland def: "A merocrine secretion that is produced by a Harderian gland, containing lipids." [DOI:10.1007/978-3-642-76685-5_2] +subset: mouse_subset synonym: "Harderian gland fluid" EXACT [] synonym: "Harderian gland secretion" EXACT [] is_a: UBERON:0000456 ! secretion of exocrine gland @@ -348509,6 +365894,8 @@ property_value: taxon_notes "in the armadillo and opossum, mucous or serous acin id: UBERON:0022283 name: pineal recess of third ventricle def: "The diverticulum of the thin roof of the dorsocaudal third ventricle that projects into the stalk of the pineal gland." [ISBN:068340007X] +subset: human_subset +subset: mouse_subset synonym: "pineal recess" EXACT [FMA:78458] synonym: "pineal recess of 3V" EXACT [DHBA:266441661] synonym: "recessus epiphysis" RELATED OMO:0003011 [NeuroNames:456] @@ -348527,6 +365914,8 @@ relationship: part_of UBERON:0002286 ! third ventricle id: UBERON:0022284 name: lacrimal gland bud def: "The single bud-like invagination of the conjunctival fornix epithelium at the temporal aspect of the eye that signals lacrimal gland formation (Int Rev Cytol. 1996;168:1-80. Cell biology of the harderian gland)." [MGI:anna] +subset: human_subset +subset: mouse_subset xref: EMAPA:35464 is_a: UBERON:0005153 ! epithelial bud is_a: UBERON:0015808 ! eye epithelium @@ -348537,6 +365926,8 @@ property_value: taxon_notes "in mouse, the primary bud arises around E13.5 and e id: UBERON:0022285 name: strand of tylotrich hair def: "A single large hair, surrounded by neurovascular tissue at the level of the sebaceous gland, with a hair follicle innervated by a hair-tylotrich neuron (CL:1001436), a rapidly acting mechanoreceptor." [CL:1001436, MP:0000977] +subset: human_subset +subset: mouse_subset xref: CL:1001436 is_a: UBERON:0001037 ! strand of hair @@ -348561,6 +365952,8 @@ property_value: taxon_notes "serous in horse [ISBN:1118473523]" xsd:string id: UBERON:0022287 name: tear film def: "An aqueous substance that covers the anterior surface of the eyeball, keeping the cornea wet." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "precorneal film" EXACT [MGI:anna] is_a: UBERON:0000456 ! secretion of exocrine gland is_a: UBERON:0006314 ! bodily fluid @@ -348576,6 +365969,8 @@ property_value: structure_notes "The tear film is structurally complex with thre [Term] id: UBERON:0022288 name: surface of eyeball +subset: human_subset +subset: mouse_subset synonym: "surface of region of wall of eyeball" RELATED [FMA:58315] xref: FMA:58315 is_a: UBERON:0036215 ! anatomical surface region @@ -348587,6 +365982,8 @@ relationship: part_of UBERON:0010230 ! eyeball of camera-type eye [Term] id: UBERON:0022292 name: splenic arteriole +subset: human_subset +subset: mouse_subset xref: NCIT:C33596 xref: SCTID:282511007 is_a: UBERON:0001980 ! arteriole @@ -348599,6 +365996,8 @@ relationship: part_of UBERON:0002106 ! spleen id: UBERON:0022293 name: reproductive gland secretion def: "A portion of organism substance that is secreted by a reproductive gland." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "genital fluid" RELATED [] synonym: "genital secretion" RELATED [] synonym: "reproductive system fluid" RELATED [] @@ -348613,6 +366012,8 @@ relationship: produced_by UBERON:0003937 ! reproductive gland id: UBERON:0022294 name: morphological boundary def: "A two dimensional anatomical structure that corresponds to some structural discontinuity." [CARO:0001007] +subset: human_subset +subset: mouse_subset xref: CARO:0001007 is_a: UBERON:0010199 {source="CARO"} ! bona-fide anatomical boundary @@ -348620,6 +366021,8 @@ is_a: UBERON:0010199 {source="CARO"} ! bona-fide anatomical boundary id: UBERON:0022295 name: integumental surface def: "The outer surface of an organism or its integumental system." [CARO:DOS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0022294 ! morphological boundary relationship: adjacent_to UBERON:0002416 ! integumental system relationship: adjacent_to UBERON:0013514 ! space surrounding organism @@ -348628,6 +366031,8 @@ relationship: adjacent_to UBERON:0013514 ! space surrounding organism id: UBERON:0022296 name: inferior palpebral branch of infra-orbital nerve def: "A nerve that innervates a lower eyelid and is a branch of the infra-orbital branch of the maxillary nerve." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "rami palpebrales inferiores nervi infraorbitalis" EXACT OMO:0003011 [Wikipedia:Inferior_palpebral_nerve] xref: FMA:52983 xref: Wikipedia:Inferior_palpebral_nerve @@ -348643,6 +366048,8 @@ relationship: innervates UBERON:0001713 ! lower eyelid id: UBERON:0022297 name: palpebral branch of infra-orbital nerve def: "A nerve that innervates an eyelid and is a branch of the infra-orbital branch of the maxillary nerve." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "palpebral branch of maxillary nerve" EXACT [] xref: SCTID:280236007 is_a: UBERON:0003437 ! eyelid nerve @@ -348658,6 +366065,8 @@ relationship: part_of UBERON:0018408 ! infra-orbital nerve id: UBERON:0022298 name: lower eyelid nerve def: "A nerve that innervates a lower eyelid." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003437 ! eyelid nerve intersection_of: UBERON:0001021 ! nerve intersection_of: innervates UBERON:0001713 ! lower eyelid @@ -348667,6 +366076,8 @@ relationship: innervates UBERON:0001713 ! lower eyelid id: UBERON:0022299 name: upper eyelid nerve def: "A nerve that innervates an upper eyelid." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003437 ! eyelid nerve intersection_of: UBERON:0001021 ! nerve intersection_of: innervates UBERON:0001712 ! upper eyelid @@ -348677,6 +366088,8 @@ id: UBERON:0022300 name: nasociliary nerve def: "A branch of the ophthalmic nerve that serves to supply the mucous membrane of the nose, the tip of the nose, and the conjunctiva." [http://medical-dictionary.thefreedictionary.com/nasociliary+nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "nasal nerve" EXACT [BTO:0001452] synonym: "nasociliary" RELATED [Wikipedia:Nasociliary_nerve] synonym: "nasociliary nerve" RELATED [BTO:0001452] @@ -348698,6 +366111,8 @@ id: UBERON:0022301 name: long ciliary nerve def: "A branch of the nasociliary nerve that innervates the ciliary muscles, the iris, and the cornea." [http://medical-dictionary.thefreedictionary.com/long+ciliary+nerve, UBERON:cjm] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "long ciliary nerve" RELATED [Wikipedia:Long_ciliary_nerves] synonym: "nervi ciliares longi" RELATED OMO:0003011 [Wikipedia:Long_ciliary_nerves] xref: FMA:52691 @@ -348723,6 +366138,8 @@ id: UBERON:0022302 name: short ciliary nerve def: "A branch of the ciliary ganglion that innervates the ciliary muscles, the iris, and the tunics of the eyeball." [http://medical-dictionary.thefreedictionary.com/long+ciliary+nerve, UBERON:cjm] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lower branch of ciliary ganglion" EXACT [FMA:7041] synonym: "nervi ciliares breves" RELATED OMO:0003011 [Wikipedia:Short_ciliary_nerves] synonym: "nervi ciliares brevis" RELATED OMO:0003011 [] @@ -348752,6 +366169,8 @@ id: UBERON:0022303 name: nervous system cell part layer def: "Single layer of a laminar structure, identified by different density, arrangement or size of cells and processes arranged in flattened layers or lamina[CUMBO]." [NLX:149357] subset: cumbo +subset: human_subset +subset: mouse_subset synonym: "lamina" BROAD [CUMBO:CUMBO] synonym: "layer" BROAD [CUMBO:CUMBO] xref: NLX:149357 @@ -348768,6 +366187,8 @@ id: UBERON:0022314 name: superior colliculus stratum zonale def: "Most superficial layer of the superior colliculus consisting primarily of thin fibers derived primarily from the occipital cortex (Brodal, Neurological Anatomy, 2nd 3d, 1981, pg. 544)." [NLX:144108] subset: defined_by_cytoarchitecture +subset: human_subset +subset: mouse_subset synonym: "stratum zonale" RELATED [NLX:144108] synonym: "zonal layer of superior colliculus" RELATED [NLX:144108] xref: NLX:144108 @@ -348778,6 +366199,8 @@ relationship: part_of UBERON:0001945 {source="nlx"} ! superior colliculus [Term] id: UBERON:0022315 name: primary motor cortex layer 5 +subset: human_subset +subset: mouse_subset synonym: "primary motor cortex lamina V" RELATED [NLX:144263] synonym: "primary motor cortex layer V" RELATED [NLX:144263] xref: NLX:144263 @@ -348790,6 +366213,8 @@ property_value: terminology_notes "Note that in some lamination schemes, more pa [Term] id: UBERON:0022316 name: primary motor cortex layer 6 +subset: human_subset +subset: mouse_subset synonym: "primary motor cortex lamina 6" RELATED [NLX:144264] synonym: "primary motor cortex lamina VI" RELATED [NLX:144264] synonym: "primary motor cortex layer VI" RELATED [NLX:144264] @@ -348803,6 +366228,8 @@ relationship: part_of UBERON:0005395 {source="nlx"} ! cortical layer VI id: UBERON:0022317 name: olfactory cortex layer 1 def: "Surface layer of the olfactory cortex that contains dendrites, fiber systems and a small number of neurons. It has been divided into a superficial part and a deep part." [NLX:152609] +subset: human_subset +subset: mouse_subset synonym: "layer 1 of olfactory cortex" RELATED [NLX:152609] synonym: "olfactory cortex plexiform layer" RELATED [NLX:152609] xref: NLX:152609 @@ -348819,6 +366246,8 @@ relationship: part_of UBERON:0002894 {source="nlx"} ! olfactory cortex id: UBERON:0022318 name: olfactory cortex layer 2 def: "Middle layer of olfactory cortex lying deep to layer 1 and superficial to layer 3, characterized by a compact layer of cell bodies. It can be divided into a superficial part and a deep part." [NLX:152610] +subset: human_subset +subset: mouse_subset synonym: "layer 2 of olfactory cortex" RELATED [NLX:152610] xref: NLX:152610 is_a: UBERON:0011215 ! central nervous system cell part cluster @@ -348833,6 +366262,8 @@ relationship: part_of UBERON:0002894 {source="nlx"} ! olfactory cortex id: UBERON:0022319 name: lateral geniculate nucleus parvocellular layer def: "Layer of the lateral geniculate nucleus characterized by small cells (adapted from Wikipedia: https://en.wikipedia.org/wiki/Lateral_geniculate_nucleus)." [NLX:152619] +subset: human_subset +subset: mouse_subset synonym: "LGN P-cell layer" EXACT [NLX:152619] synonym: "parvocellular layer of lateral geniculate nucleus" RELATED [NLX:152619] xref: NLX:152619 @@ -348843,6 +366274,8 @@ relationship: part_of UBERON:0001926 {source="cjm"} ! lateral geniculate body [Term] id: UBERON:0022320 name: dorsal cochlear nucleus pyramidal cell layer +subset: human_subset +subset: mouse_subset xref: NLX:153848 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer @@ -348857,6 +366290,8 @@ id: UBERON:0022323 name: entorhinal cortex layer 4 def: "Layer of entorhinal cortex lying superficial to layer 5 and deep to layer 3, that is relatively acellular. (Paxinos, The rat nervous system, Academic Press, 1995, pg 473-474)." [NLX:39987] comment: This layer is better developed in the medial entorhinal cortex although species differences are apparent[DOI:10.1155/2008/381243] +subset: human_subset +subset: mouse_subset synonym: "entorhinal cortex layer IV" RELATED [NLX:39987] synonym: "lamina dessicans" RELATED [DOI:10.1155/2008/381243] synonym: "lamina dessicans of entorhinal cortex" RELATED [DOI:10.1155/2008/381243, NLX:39987] @@ -348877,6 +366312,8 @@ id: UBERON:0022325 name: entorhinal cortex layer 5 def: "Layer of entorhinal cortex lying superficial to layer 6 and deep to layer 4 characterized by large pyramidal neurons that are darkly stained in Nissl preparations (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)." [NLX:58] subset: defined_by_cytoarchitecture +subset: human_subset +subset: mouse_subset synonym: "entorhinal cortex layer V" EXACT [DOI:10.1155/2008/381243] xref: NLX:58 is_a: UBERON:0011215 ! central nervous system cell part cluster @@ -348890,6 +366327,8 @@ relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex [Term] id: UBERON:0022326 name: molecular layer of dorsal cochlear nucleus +subset: human_subset +subset: mouse_subset synonym: "dorsal cochlear nucleus molecular layer" RELATED [NLX:89] synonym: "MoC" RELATED OMO:0003000 [] xref: NLX:89 @@ -348903,6 +366342,8 @@ name: entorhinal cortex layer 3 alt_id: UBERON:0032288 def: "Layer of the entorhinal cortex lying superficial to layer 4and deep to layer 2. It is characterized by cells of various sizes and shapes with a predominance of pyramidal cells (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)." [NLX:93650] subset: defined_by_cytoarchitecture +subset: human_subset +subset: mouse_subset synonym: "entorhinal cortex layer III" RELATED [NLX:93650] synonym: "entorhinal cortex, pyramidal layer" EXACT [NLXANAT:20090702] synonym: "layer 3 of entorhinal cortex" RELATED [NLX:93650] @@ -348924,6 +366365,8 @@ name: entorhinal cortex layer 6 def: "Layer of entorhinal cortex lying superficial to the cerebral white matter and deep to layer 5 characterized by cells of various shapes and sizes (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)." [NLX:98] comment: This layer is delineated by the white matter, multiple layers can be distinguished, more in particular in primates[DOI:10.1155/2008/381243] subset: defined_by_cytoarchitecture +subset: human_subset +subset: mouse_subset synonym: "entorhinal cortex layer VI" EXACT [DOI:10.1155/2008/381243, NLX:98] synonym: "layer 6 region of entorhinal cortex" RELATED [NLX:98] xref: NLX:98 @@ -348940,6 +366383,8 @@ id: UBERON:0022336 name: entorhinal cortex layer 1 def: "Layer of the entorhinal cortex that is most superficial, continuous with layer 1 of adjacent neocortex and the molecular layer of the subiculum, lying deep to the pial layer and superficial to layer 2. It is relatively acellular consisting mostly of fibers running transversely relative to the cortical surface (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)." [NLXANAT:090820] subset: defined_by_cytoarchitecture +subset: human_subset +subset: mouse_subset synonym: "EC layer 1" RELATED OMO:0003000 [] synonym: "entorhinal cortex layer I" RELATED [NLXANAT:090820] synonym: "entorhinal cortex molecular layer" RELATED [NLXANAT:090820] @@ -348961,6 +366406,8 @@ property_value: external_ontology_notes "the two NIFSTD classes appear to refer id: UBERON:0022337 name: entorhinal cortex layer 2 def: "Layer of the entorhinal cortex lying superficial to layer 3 and deep to layer 1. It is characterized by medium-to large sized stellate cells that are grouped into prominent clusters, particularly in the rostral entorhinal cortex (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)." [NLXANAT:090821] +subset: human_subset +subset: mouse_subset synonym: "EC layer 2" RELATED OMO:0003000 [] synonym: "entorhinal cortex layer II" RELATED [NLXANAT:090821] synonym: "layer 2 of entorhinal cortex" RELATED [NLXANAT:090821] @@ -348980,6 +366427,8 @@ id: UBERON:0022340 name: piriform cortex layer 2a def: "Superficial region of layer 2 of the piriform cortex characterized by a less dense packing of cells and a concentration of semilunar cell bodies." [NLXANAT:091007] subset: defined_by_cytoarchitecture +subset: human_subset +subset: mouse_subset synonym: "layer 2a of piriform cortex" RELATED [NLXANAT:091007] synonym: "layer IIa of piriform cortex" RELATED [NLXANAT:091007] synonym: "piriform cortex layer IIa" RELATED [NLXANAT:091007] @@ -348993,6 +366442,8 @@ id: UBERON:0022341 name: piriform cortex layer 2b def: "Deeper of two subdivisions of piriform layer 2 characterized by more densely packed cell bodies dominated by pyramidal cell bodies." [NLXANAT:091008] subset: defined_by_cytoarchitecture +subset: human_subset +subset: mouse_subset xref: NLXANAT:091008 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer @@ -349001,6 +366452,8 @@ relationship: part_of UBERON:0014280 {source="nlx"} ! piriform cortex layer 2 [Term] id: UBERON:0022346 name: dentate gyrus molecular layer middle +subset: human_subset +subset: mouse_subset synonym: "DG middle stratum moleculare" RELATED [NLXANAT:1008003] synonym: "middle layer of dentate gyrus molecular layer" RELATED [NLXANAT:1008003] xref: FMA:277810 @@ -349013,6 +366466,8 @@ relationship: part_of UBERON:0004679 {source="nlx"} ! dentate gyrus molecular la id: UBERON:0022347 name: dentate gyrus molecular layer inner def: "Inner third of the dentate gyrus." [NLXANAT:1008004] +subset: human_subset +subset: mouse_subset synonym: "DG inner stratum moleculare" RELATED [NLXANAT:1008004] synonym: "inner layer of dentate gyrus molecular layer" RELATED [NLXANAT:1008004] xref: FMA:277812 @@ -349024,6 +366479,8 @@ relationship: part_of UBERON:0004679 {source="nlx"} ! dentate gyrus molecular la [Term] id: UBERON:0022348 name: dentate gyrus granule cell layer inner blade +subset: human_subset +subset: mouse_subset synonym: "enclosed blade of stratum granulare" RELATED [NLXANAT:1008005] synonym: "extrapyramidal blade dentate gyrus granule cell layer" RELATED [NLXANAT:1008005] synonym: "extrapyramidal blade of stratum granulare" RELATED [NLXANAT:1008005] @@ -349037,6 +366494,8 @@ relationship: part_of UBERON:0005381 {source="nlx"} ! dentate gyrus granule cell [Term] id: UBERON:0022349 name: dentate gyrus granule cell layer outer blade +subset: human_subset +subset: mouse_subset synonym: "exposed blade of stratum granulare" RELATED [NLXANAT:1008006] synonym: "infrapyramidal blade dentate gyrus granule cell layer" RELATED [NLXANAT:1008006] synonym: "infrapyramidal blade of stratum granulare" RELATED [NLXANAT:1008006] @@ -349051,6 +366510,8 @@ relationship: part_of UBERON:0005381 {source="nlx"} ! dentate gyrus granule cell id: UBERON:0022350 name: visceral serous membrane def: "Serous membrane layer that is adjacent to and lines an organ." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "visceral wall of serous membrane" EXACT [FMA:15860] xref: FMA:15860 is_a: UBERON:0004120 ! mesoderm-derived structure @@ -349065,6 +366526,8 @@ relationship: part_of UBERON:0000042 ! serous membrane id: UBERON:0022351 name: parietal serous membrane def: "Serous membrane layer that lines to a body cavity." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "cavity lining" BROAD [MA:0002448] synonym: "parietal wall of serous membrane" EXACT [FMA:15859] xref: FMA:15859 @@ -349081,6 +366544,8 @@ relationship: part_of UBERON:0000042 ! serous membrane id: UBERON:0022352 name: medial orbital frontal cortex def: "Component of the orbtial frontal cortex. The rostral boundary is the first slice where the medial orbital gyrus became visible whereas the caudal boundary is the disappearance of the medial orbital gyrus/gyrus rectus. The medial and lateral boundaries are the cingulate cortex on the u2018inflatedu2019 surface and the medial bank of the superior frontal gyrus (or the cingulate gyrus when visible) respectively (Christine Fennema-Notestine)." [BIRNLEX:1249] +subset: human_subset +subset: mouse_subset synonym: "frontal medial cortex" BROAD [http://orcid.org/0000-0001-6755-0259] synonym: "medial orbitofrontal cortex" EXACT [http://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:1249 @@ -349093,6 +366558,8 @@ relationship: part_of UBERON:0004167 {source="NIFSTD"} ! orbitofrontal cortex id: UBERON:0022353 name: posterior cingulate cortex def: "Component of the cingulate cortex. The rostral and caudal extent were the caudal anterior and the isthmus divisions of the cingulate cortex respectively. The medial and lateral boundaries were the corpus callosum and as the superior frontal gyrus and/or paracentral lobule respectively (Christine Fennema-Notestine)." [BIRNLEX:950] +subset: human_subset +subset: mouse_subset synonym: "cingulate gyrus, posterior division" RELATED [http://orcid.org/0000-0001-6755-0259] synonym: "posterior cingular cortex" RELATED [Wikipedia:Posterior_cingulate] synonym: "posterior cingulate" BROAD [Wikipedia:Posterior_cingulate] @@ -349111,6 +366578,8 @@ id: UBERON:0022355 name: basal layer of endometrium def: "The layer of endometrial epithelium adjacent to the uterine cavity." [Wikipedia:Endometrium#Histology] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "pars basalis of endometrium" EXACT [] synonym: "stratum basalis of endometrium" EXACT [FMA:86492] xref: FMA:86492 @@ -349126,6 +366595,8 @@ id: UBERON:0022356 name: outer layer of endometrium def: "The layer of endometrial epithelium adjacent to the myometrium." [Wikipedia:Endometrium#Histology] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "functional layer of endometrium" EXACT [FMA:86493] synonym: "stratum functionalis of endometrium" EXACT [FMA:86493] xref: FMA:86493 @@ -349139,6 +366610,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0022357 name: mesentery of ileum +subset: human_subset +subset: mouse_subset synonym: "ileal mesentery" EXACT [FMA:14652] synonym: "ileum mesentery" EXACT [FMA:14652] synonym: "mesoileum" EXACT [] @@ -349153,6 +366626,8 @@ id: UBERON:0022358 name: placenta blood vessel def: "A blood vessel of the placenta." [GO:0060674] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "placental vessel" BROAD [] xref: SCTID:280716005 is_a: UBERON:0001981 ! blood vessel @@ -349166,6 +366641,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0022360 name: male mammary gland duct def: "A mammary gland duct that is part of a male organism. This structure typically regresses." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001765 ! mammary duct intersection_of: UBERON:0001765 ! mammary duct intersection_of: part_of UBERON:0003101 ! male organism @@ -349175,6 +366652,8 @@ relationship: part_of UBERON:0003101 ! male organism id: UBERON:0022361 name: lung field def: "A specific region of the foregut into the area in which the lung will develop." [GOC:dph, GOC:mtg_lung] +subset: human_subset +subset: mouse_subset synonym: "lung field" EXACT [] xref: SCTID:34922002 is_a: UBERON:0004119 ! endoderm-derived structure @@ -349188,6 +366667,8 @@ relationship: part_of UBERON:0003258 ! endoderm of foregut id: UBERON:0022364 name: occipital fusiform gyrus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "FuGo" RELATED OMO:0003000 [DHBA:12152] synonym: "occipital fusiform gyrus (OF)" EXACT [FMA:71033] synonym: "occipitotemporal (fusiform) gyrus, occipital part" EXACT [DHBA:12152] @@ -349204,6 +366685,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b [Term] id: UBERON:0022367 name: inferior lateral occipital cortex +subset: human_subset +subset: mouse_subset synonym: "lateral occipital cortex, inferior division" EXACT [https://github.com/obophenotype/uberon/issues/630] synonym: "lateral occipital cortex, inferior division (OLI)" EXACT [FMA:71034] xref: FMA:71034 @@ -349214,6 +366697,8 @@ relationship: source_atlas Harvard-Oxford:Atlas [Term] id: UBERON:0022368 name: superior lateral occipital cortex +subset: human_subset +subset: mouse_subset synonym: "lateral occipital cortex, superior division" EXACT [https://github.com/obophenotype/uberon/issues/630] xref: FMA:71035 is_a: UBERON:0002616 ! regional part of brain @@ -349225,6 +366710,8 @@ id: UBERON:0022383 name: anterior parahippocampal gyrus def: "The part of the parahippocampal gyrus that includes the perirhinal and entorhinal cortices." [Wikipedia:Parahippocampal_gyrus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "APH" RELATED OMO:0003000 [DHBA:12163] synonym: "parahippocampal gyrus, anterior division" EXACT [http://orcid.org/0000-0001-6755-0259] xref: DHBA:12163 @@ -349239,6 +366726,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b [Term] id: UBERON:0022394 name: posterior parahippocampal white matter +subset: human_subset +subset: mouse_subset synonym: "posterior parahippocampal white matter" RELATED [NeuroNames:827] synonym: "substantia medullaris parahippocampalis posterior" RELATED OMO:0003011 [NeuroNames:827] xref: neuronames:827 @@ -349251,6 +366740,8 @@ relationship: part_of UBERON:0002657 ! posterior parahippocampal gyrus [Term] id: UBERON:0022395 name: temporal fusiform gyrus +subset: human_subset +subset: mouse_subset synonym: "FuGt" RELATED OMO:0003000 [DHBA:12143] synonym: "occipitotemporal (fusiform) gyrus, temporal part" EXACT [DHBA:12143] xref: DHBA:12143 @@ -349261,6 +366752,8 @@ relationship: source_atlas Harvard-Oxford:Atlas [Term] id: UBERON:0022396 name: anterior temporal fusiform gyrus +subset: human_subset +subset: mouse_subset synonym: "occipitotemporal (fusiform) gyrus, anterior division" EXACT [http://orcid.org/0000-0001-6755-0259] is_a: UBERON:0002616 ! regional part of brain disjoint_from: UBERON:0022397 {source="lexical"} ! posterior temporal fusiform gyrus @@ -349270,6 +366763,8 @@ relationship: source_atlas Harvard-Oxford:Atlas [Term] id: UBERON:0022397 name: posterior temporal fusiform gyrus +subset: human_subset +subset: mouse_subset synonym: "occipitotemporal (fusiform) gyrus, posterior division" EXACT [http://orcid.org/0000-0001-6755-0259] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002766 ! fusiform gyrus @@ -349279,6 +366774,8 @@ relationship: source_atlas Harvard-Oxford:Atlas id: UBERON:0022398 name: paracingulate gyrus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "PaCG" RELATED OMO:0003000 [DHBA:146034872] synonym: "paracingulate gyrus (PAC)" EXACT [FMA:71037] xref: DHBA:146034872 @@ -349291,6 +366788,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0022420 name: temporal part of superior longitudinal fasciculus +subset: human_subset +subset: mouse_subset synonym: "superior longitudinal fasciculus, temporal division" EXACT [] is_a: UBERON:0022248 ! cerebral nerve fasciculus relationship: part_of UBERON:0022246 ! superior longitudinal fasciculus @@ -349299,6 +366798,8 @@ relationship: part_of UBERON:0022246 ! superior longitudinal fasciculus id: UBERON:0022421 name: pontocerebellar tract def: "The second order neuron fibers of the corticopontocerebellar tracts that cross to the other side of the pons and run within the middle cerebellar peduncles, from the pons to the contralateral cerebellum." [Wikipedia:Pontocerebellar_fibers] +subset: human_subset +subset: mouse_subset synonym: "fibrae pontocerebellaris" EXACT OMO:0003011 [Wikipedia:Pontocerebellar_fibers] synonym: "pncb" RELATED OMO:0003000 [DHBA:12769] synonym: "pontine crossing tract" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -349317,6 +366818,8 @@ relationship: part_of UBERON:0002317 {source="HBA"} ! white matter of cerebellum id: UBERON:0022423 name: sagulum nucleus def: "A collection of principally small and medium-sized cells in the midbrain tegmentum lying at the margin of the midbrain adjacent to the nuclei of the lateral lemniscus." [NLX:64080] +subset: human_subset +subset: mouse_subset synonym: "nucleus saguli" EXACT OMO:0003011 [FMA:77492, FMA:TA] synonym: "nucleus sagulum" RELATED OMO:0003011 [NeuroNames:1308, NLX:64080] synonym: "Sag" RELATED OMO:0003000 [HBA:9486] @@ -349335,6 +366838,8 @@ relationship: part_of UBERON:0002314 {source="HBA"} ! midbrain tectum id: UBERON:0022424 name: supragenual nucleus of pontine tegmentum def: "A group of neurons embedded in the pontine central gray of the pontine tegmentum. Located dorsal to the internal genu of the facial nerve, it is found in the human ( Paxinos-2012 ), the macaque ( Paxinos-2009a ), the rat ( Swanson-2004 ), and the mouse ( Franklin-2008 ). Functionally it is part of the dorsal pontine gray of the subcortical motor system ( Swanson-2004 )." [NeuroNames:1981] +subset: human_subset +subset: mouse_subset synonym: "SGe" RELATED OMO:0003000 [DHBA:12662] synonym: "supragenual nucleus" EXACT [NeuroNames:1981] xref: DHBA:12662 @@ -349347,6 +366852,8 @@ relationship: part_of UBERON:0003023 {source="DHBA", source="Neuronames-def"} ! [Term] id: UBERON:0022425 name: anterior corona radiata +subset: human_subset +subset: mouse_subset synonym: "anterior portion of corona radiata" EXACT [DHBA:15541] synonym: "cor-a" RELATED OMO:0003000 [DHBA:15541] xref: DHBA:15541 @@ -349358,6 +366865,8 @@ relationship: source_atlas http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter- [Term] id: UBERON:0022426 name: superior corona radiata +subset: human_subset +subset: mouse_subset synonym: "cor-s" RELATED OMO:0003000 [DHBA:15542] synonym: "superior portion of corona radiata" EXACT [DHBA:15542] xref: DHBA:15542 @@ -349368,6 +366877,8 @@ relationship: source_atlas http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter- [Term] id: UBERON:0022427 name: posterior corona radiata +subset: human_subset +subset: mouse_subset synonym: "cor-p" RELATED OMO:0003000 [DHBA:15543] synonym: "posterior portion of corona radiata" EXACT [DHBA:15543] xref: DHBA:15543 @@ -349378,6 +366889,8 @@ relationship: source_atlas http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter- [Term] id: UBERON:0022428 name: cingulate cortex cingulum +subset: human_subset +subset: mouse_subset synonym: "cb-cx" RELATED OMO:0003000 [DHBA:15539] synonym: "cingulum (cingulate gyrus)" EXACT [] synonym: "cingulum bundle in cingulate cortex" EXACT [DHBA:15539] @@ -349391,6 +366904,8 @@ relationship: part_of UBERON:0003027 ! cingulate cortex [Term] id: UBERON:0022429 name: temporal cortex cingulum +subset: human_subset +subset: mouse_subset synonym: "cb-tx" RELATED OMO:0003000 [DHBA:15540] synonym: "cingulum (temporal gyrus)" EXACT [] synonym: "cingulum bundle in temporal cortex" EXACT [DHBA:15540] @@ -349404,6 +366919,8 @@ relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0022430 name: hippocampus cortex cingulum +subset: human_subset +subset: mouse_subset synonym: "cingulum (Ammon's horn)" EXACT [] synonym: "cingulum (hippocampus)" EXACT [] synonym: "cingulum bundle in hippocampus" EXACT [] @@ -349428,6 +366945,8 @@ consider: UMLS:C0694579 id: UBERON:0022434 name: primary superior olive def: "Part of the superior olivary complex of nuclei in the caudal pontine tegmentum, situated within the trapezoid body in humans. (Brodal, Neurological Anatomy, 3rd edition, 1981, pg 617). In many species, it comprises a medial superior olivary nucleus and a lateral superior olivary nucleus." [BIRNLEX:900] +subset: human_subset +subset: mouse_subset synonym: "superior olive" BROAD INCONSISTENT [BIRNLEX:900] xref: BAMS:SOl xref: BIRNLEX:900 @@ -349444,6 +366963,8 @@ property_value: terminology_notes "many sources refer to this simply as the 'sup [Term] id: UBERON:0022437 name: dorsal periolivary nucleus +subset: human_subset +subset: mouse_subset synonym: "DPeO" RELATED OMO:0003000 [DMBA:17260] synonym: "DPO" RELATED OMO:0003000 [] synonym: "nuclei periolivares" BROAD OMO:0003011 [FMA:TA] @@ -349460,6 +366981,8 @@ relationship: part_of UBERON:0002971 {source="Wikipedia"} ! periolivary nucleus id: UBERON:0022438 name: rostral anterior cingulate cortex def: "Component of the cingulate cortex. The rostral boundary was the first appearance of the cingulate sulcus (inferior to the superior frontal sulcus) whereas the caudal boundary was the first appearance of the genu of the corpus callosum. The medial boundary was the medial aspect of the cortex. The supero-lateral boundary was the superior frontal gyrus whereas the infero-lateral boundary was defined as the medial division of the orbitofrontal gyrus (Christine Fennema-Notestine)." [BIRNLEX:975] +subset: human_subset +subset: mouse_subset synonym: "rostral anterior cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:975] xref: BIRNLEX:975 is_a: UBERON:0002616 ! regional part of brain @@ -349469,6 +366992,8 @@ relationship: part_of UBERON:0009835 {source="NIFSTD"} ! anterior cingulate cort id: UBERON:0022453 name: olfactory entorhinal cortex def: "A part of the entorhinal area defined on the basis of connectivity. It is the rostral portion, which receives a projection from the olfactory bulb (Price-90)-Adapted from Brain Info." [BIRNLEX:2705] +subset: human_subset +subset: mouse_subset synonym: "EOl" RELATED OMO:0003000 [BIRNLEX:2705] xref: BIRNLEX:2705 xref: neuronames:2274 @@ -349480,6 +367005,8 @@ relationship: part_of UBERON:0002894 {source="NIFSTD"} ! olfactory cortex id: UBERON:0022469 name: primary olfactory cortex def: "A group of structures defined by connectivity, namely, structures that receive axons from the olfactory bulb. They include the anterior olfactory nucleus, the anterior perforated substance, the rostral part of the medial amygdaloid nucleus (anterior cortical nucleus of amygdala), and structures in the anterior part of the parahippocampal gyrus, namely, the prepyriform area, most of the periamygdaloid area, and the rostral part of the entorhinal area (Price-90). Note that some authors have regarded the olfactory bulb itself as the primary olfactory area and the areas to which it projects as secondary (Anthoney-94). In the mouse (Dong-2004) and the rat (Swanson-2004), olfactory areas include the olfactory bulb, accessory olfactory bulb, anterior olfactory nucleus, tenia tecta, prepyriform area, postpiriform transition area, piriform amygdaloid area, nucleus of lateral olfactory tract, and cortical amygdaloid area." [BIRNLEX:2706] +subset: human_subset +subset: mouse_subset synonym: "primary olfactory areas" RELATED [BIRNLEX:2706] xref: BIRNLEX:2706 is_a: UBERON:0002616 ! regional part of brain @@ -349502,6 +367029,8 @@ consider: BIRNLEX:1039 id: UBERON:0022534 name: pericalcarine cortex def: "Component of the parietal lobe. The rostral boundary of the pericalcarine cortex was the first appearance of the calcarine sulcus whereas the caudal boundary was the most posterior coronal slice where the calcarine sulcus was visualized. The medial and lateral boundaries were the medial portion of the temporal and occipital cortices and the inferomedial end of the calcarine sulcus respectively (Christine Fennema-Notestine)." [BIRNLEX:1059] +subset: human_subset +subset: mouse_subset synonym: "pericalcarine cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1059] xref: BIRNLEX:1059 is_a: UBERON:0002616 ! regional part of brain @@ -349550,6 +367079,8 @@ consider: BIRNLEX:1174 [Term] id: UBERON:0022649 name: habenulo-interpeduncular tract of diencephalon +subset: human_subset +subset: mouse_subset synonym: "habenulo-interpeduncular tract of diencephalon" EXACT HUMAN_PREFERRED [BIRNLEX:1176] xref: BIRNLEX:1176 xref: neuronames:461 @@ -349600,6 +367131,8 @@ consider: BIRNLEX:1209 [Term] id: UBERON:0022695 name: orbital gyri complex +subset: human_subset +subset: mouse_subset synonym: "orbital gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:1223] synonym: "orgital_gyri" RELATED [BIRNLEX:1223] xref: BIRNLEX:1223 @@ -349618,6 +367151,8 @@ consider: BIRNLEX:1229 id: UBERON:0022716 name: lateral orbital frontal cortex def: "Component of the orbtial frontal cortex The rostral boundary is the first slice where the lateral orbital gyrus is apparent with the frontomarginal sulcus whereas the caudal boundary is the disappearance of the lateral orbital gyrus. The medial and lateral boundaries are the midpoint of the olfactory sulcus and the lateral bank of the lateral orbital sulcus and/or the circular insular sulcus respectively (Christine Fennema-Notestine)." [BIRNLEX:1244] +subset: human_subset +subset: mouse_subset synonym: "lateral orbital frontal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1244] xref: BIRNLEX:1244 is_a: UBERON:0002616 ! regional part of brain @@ -349626,6 +367161,8 @@ relationship: part_of UBERON:0004167 {source="NIFSTD"} ! orbitofrontal cortex [Term] id: UBERON:0022730 name: transverse frontopolar gyri complex +subset: human_subset +subset: mouse_subset synonym: "transverse frontopolar gyri" RELATED [BIRNLEX:1258] synonym: "transverse frontopolar gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:1258] xref: BIRNLEX:1258 @@ -349670,6 +367207,8 @@ consider: BIRNLEX:1289 [Term] id: UBERON:0022776 name: composite part spanning multiple base regional parts of brain +subset: human_subset +subset: mouse_subset synonym: "composite part spanning multiple base regional parts of brain" EXACT HUMAN_PREFERRED [BIRNLEX:1304] xref: BIRNLEX:1304 is_a: UBERON:0034925 ! anatomical collection @@ -349685,6 +367224,8 @@ consider: BIRNLEX:1306 [Term] id: UBERON:0022783 name: paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part medial zone +subset: human_subset +subset: mouse_subset synonym: "paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part medial zone" EXACT HUMAN_PREFERRED [BIRNLEX:1312] xref: BIRNLEX:1312 xref: HBA:4584 @@ -349694,6 +367235,8 @@ relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0022791 name: paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part lateral zone +subset: human_subset +subset: mouse_subset synonym: "paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part lateral zone" EXACT HUMAN_PREFERRED [BIRNLEX:1320] xref: BIRNLEX:1320 xref: HBA:4585 @@ -349745,6 +367288,8 @@ consider: BIRNLEX:1465 [Term] id: UBERON:0022941 name: dorsal nerve root of sacral spinal cord +subset: human_subset +subset: mouse_subset synonym: "dorsal nerve root of sacral spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1469] synonym: "posterior nerve root of sacral spinal cord" RELATED [BIRNLEX:1469] xref: BIRNLEX:1469 @@ -349755,6 +367300,8 @@ disjoint_from: UBERON:0024382 {source="NIFSTD"} ! ventral nerve root of lumbar s id: UBERON:0022943 name: reticulospinal tract def: "The reticulospinal tract (or anterior reticulospinal tract) is an extrapyramidal motor tract which travels from the reticular formation." [Wikipedia:Reticulospinal_tract] +subset: human_subset +subset: mouse_subset synonym: "reticulospinal tract" EXACT HUMAN_PREFERRED [BIRNLEX:1471] xref: BIRNLEX:1471 xref: neuronames:805 @@ -349850,6 +367397,8 @@ consider: BIRNLEX:1620 [Term] id: UBERON:0023094 name: posterodorsal nucleus of medial geniculate body +subset: human_subset +subset: mouse_subset synonym: "nucleus corporis geniculati medialis, pars posterodorsalis" RELATED [BIRNLEX:1622] synonym: "posterodorsal nucleus of medial geniculate body" EXACT HUMAN_PREFERRED [BIRNLEX:1622] synonym: "posterodorsal nucleus of medial geniculate complex" RELATED [BIRNLEX:1622] @@ -349890,6 +367439,8 @@ consider: BIRNLEX:1693 [Term] id: UBERON:0023255 name: sub-lobar region +subset: human_subset +subset: mouse_subset synonym: "sub-lobar region" EXACT HUMAN_PREFERRED [BIRNLEX:1788] xref: BIRNLEX:1788 is_a: UBERON:0016526 {source="NIFSTD"} ! lobe of cerebral hemisphere @@ -349918,6 +367469,8 @@ consider: BIRNLEX:2633 [Term] id: UBERON:0023378 name: medullary anterior horn +subset: human_subset +subset: mouse_subset synonym: "cornu anterius medullaris" EXACT OMO:0003011 [FMA:72610, FMA:TA] synonym: "medullary anterior horn" EXACT HUMAN_PREFERRED [BIRNLEX:2649] xref: BIRNLEX:2649 @@ -349930,6 +367483,8 @@ relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata [Term] id: UBERON:0023390 name: medial subnucleus of solitary tract +subset: human_subset +subset: mouse_subset synonym: "medial part" RELATED [BIRNLEX:2662] synonym: "medial subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:2662] synonym: "medial subnucleus of the solitary tract" EXACT [NeuroNames:745] @@ -349968,6 +367523,8 @@ consider: BIRNLEX:2678 [Term] id: UBERON:0023415 name: lateral amygdaloid nucleus, dorsolateral part +subset: human_subset +subset: mouse_subset synonym: "lateral amygdaloid nucleus, dorsolateral part" EXACT HUMAN_PREFERRED [BIRNLEX:2689] xref: BIRNLEX:2689 is_a: UBERON:0002616 ! regional part of brain @@ -349976,6 +367533,8 @@ relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0023416 name: lateral amygdaloid nucleus, ventrolateral part +subset: human_subset +subset: mouse_subset synonym: "lateral amygdaloid nucleus, ventrolateral part" EXACT HUMAN_PREFERRED [BIRNLEX:2690] xref: BIRNLEX:2690 is_a: UBERON:0002616 ! regional part of brain @@ -349984,6 +367543,8 @@ relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0023417 name: lateral amygdaloid nucleus, ventromedial part +subset: human_subset +subset: mouse_subset synonym: "lateral amygdaloid nucleus, ventromedial part" EXACT HUMAN_PREFERRED [BIRNLEX:2691] xref: BIRNLEX:2691 is_a: UBERON:0002616 ! regional part of brain @@ -349992,6 +367553,8 @@ relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0023443 name: superficial feature part of forebrain +subset: human_subset +subset: mouse_subset synonym: "superficial feature part of forebrain" EXACT HUMAN_PREFERRED [BIRNLEX:4005] xref: BIRNLEX:4005 is_a: UBERON:0002616 ! regional part of brain @@ -350000,6 +367563,8 @@ relationship: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0023462 name: superficial feature part of occipital lobe +subset: human_subset +subset: mouse_subset synonym: "superficial feature part of occipital lobe" EXACT HUMAN_PREFERRED [BIRNLEX:4024] xref: BIRNLEX:4024 is_a: UBERON:0002616 ! regional part of brain @@ -350015,6 +367580,8 @@ consider: BIRNLEX:4098 [Term] id: UBERON:0023541 name: conical papilla +subset: human_subset +subset: mouse_subset synonym: "conical papilla" EXACT HUMAN_PREFERRED [BIRNLEX:4103] xref: BIRNLEX:4103 xref: UMLS:C0226967 @@ -350052,6 +367619,8 @@ consider: BIRNLEX:4122 [Term] id: UBERON:0023564 name: cytoarchitectural part of dentate gyrus +subset: human_subset +subset: mouse_subset synonym: "cytoarchitectural part of dentate gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:4126] xref: BIRNLEX:4126 is_a: UBERON:0002616 ! regional part of brain @@ -350074,6 +367643,8 @@ consider: BIRNLEX:718 [Term] id: UBERON:0023623 name: ventral nerve root of sacral spinal cord +subset: human_subset +subset: mouse_subset synonym: "anterior nerve root of sacral spinal cord" RELATED [BIRNLEX:755] synonym: "ventral nerve root of sacral spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:755] xref: BIRNLEX:755 @@ -350146,6 +367717,8 @@ consider: BIRNLEX:842 [Term] id: UBERON:0023740 name: habenulo-interpeduncular tract of midbrain +subset: human_subset +subset: mouse_subset synonym: "habenulo-interpeduncular tract of midbrain" EXACT HUMAN_PREFERRED [BIRNLEX:895] xref: BIRNLEX:895 xref: neuronames:818 @@ -350161,6 +367734,8 @@ relationship: part_of UBERON:0016554 ! white matter of midbrain [Term] id: UBERON:0023752 name: intermediate part of hypophysis +subset: human_subset +subset: mouse_subset synonym: "intermediate lobe of hypophysis" RELATED [BIRNLEX:906] synonym: "intermediate part of hypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:906] synonym: "intermediate region of hypophysis" RELATED [BIRNLEX:906] @@ -350185,6 +367760,8 @@ id: UBERON:0023787 name: subicular complex def: "A composite structure of the temporal lobe that includes the subiculum, the presubiculum and the parasubicular area (Amaral-90)." [BIRNLEX:944] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "subicular complex" EXACT HUMAN_PREFERRED [BIRNLEX:944] xref: BIRNLEX:944 xref: FMA:275157 @@ -350239,6 +367816,8 @@ consider: BIRNLEX:987 [Term] id: UBERON:0023836 name: gross anatomical parts of the cerebellum +subset: human_subset +subset: mouse_subset synonym: "gross anatomical parts of the cerebellum" EXACT HUMAN_PREFERRED [BIRNLEX:996] xref: BIRNLEX:996 is_a: UBERON:0002616 ! regional part of brain @@ -350248,6 +367827,8 @@ relationship: part_of UBERON:0002037 ! cerebellum id: UBERON:0023852 name: temporoparietal junction def: "An area of the brain that locates at the interception of temporal and parietal cortices (at the posterior end of the Sylvian fissure)." [NLX:144255] +subset: human_subset +subset: mouse_subset synonym: "temporoparietal junction" EXACT [NLX:144255] xref: NLX:144255 is_a: UBERON:0002616 ! regional part of brain @@ -350257,6 +367838,8 @@ relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex [Term] id: UBERON:0023855 name: commissural nucleus of the solitary tract +subset: human_subset +subset: mouse_subset synonym: "commissural nucleus of the solitary tract" EXACT [NLX:144259] synonym: "commissural nucleus tractus solitarius" RELATED [NLX:144259] xref: NLX:144259 @@ -350266,6 +367849,8 @@ relationship: part_of UBERON:0002126 ! solitary tract nuclear complex [Term] id: UBERON:0023859 name: primary somatosensory cortex layer 6 +subset: human_subset +subset: mouse_subset synonym: "primary somatosensory cortex lamina VI" EXACT [NLX:144265] synonym: "primary somatosensory cortex lamina VI" RELATED [NLX:144265] xref: NLX:144265 @@ -350277,6 +367862,8 @@ id: UBERON:0023861 name: planum polare def: "A portion of the superior temporal gyrus near the temporal pole in the human." [NLX:144291] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "planum polare" EXACT [NLX:144291] xref: HBA:4177 xref: neuronames:2020 @@ -350292,6 +367879,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0023862 name: hippocampal formation of GP94 def: "The combined region of AmmonÕs horn, subicular complex and dentate gyrus; only fields CA1-CA3 of the hippocampus were considered to be part of the HF, field CA4 being included in the hilus of the dentate gyrus[1]." [NLX:144306] +subset: human_subset +subset: mouse_subset synonym: "hippocampal formation of gp94" EXACT [NLX:144306] xref: NLX:144306 is_a: UBERON:0002616 ! regional part of brain @@ -350300,6 +367889,8 @@ relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0023865 name: medial ventral tegmental area +subset: human_subset +subset: mouse_subset synonym: "medial ventral tegmental area" EXACT [NLX:22533] xref: NLX:22533 is_a: UBERON:0002616 ! regional part of brain @@ -350310,6 +367901,8 @@ relationship: part_of UBERON:0002691 {source="NIFSTD"} ! ventral tegmental area id: UBERON:0023867 name: islands of Calleja of olfactory tubercle def: "Part of olfactory tubercle defined by dense aggregations of granule cells." [NLX:50741] +subset: human_subset +subset: mouse_subset synonym: "islands of calleja of olfactory tubercle" EXACT [NLX:50741] synonym: "islets of calleja" RELATED [NLX:50741] xref: NLX:50741 @@ -350322,6 +367915,8 @@ relationship: part_of UBERON:0001883 {source="NIFSTD"} ! olfactory tubercle id: UBERON:0023868 name: isla magna of Calleja def: "Regional part of telencephalon; the most prominent of the islands of Calleja located medially in the nucleus accumbens (adapted from Braininfo.org)." [NLX:55138] +subset: human_subset +subset: mouse_subset synonym: "insula magna" RELATED [NLX:55138] synonym: "isla magna of calleja" EXACT [NLX:55138] synonym: "large island of calleja" RELATED [NLX:55138] @@ -350348,6 +367943,8 @@ consider: UBERON:0000158 id: UBERON:0023879 name: neural system def: "A set of neural structures that subserve a specific function, e.g., visual system." [NLXANAT:090802] +subset: human_subset +subset: mouse_subset synonym: "neural system" EXACT [NLXANAT:090802] xref: NLXANAT:090802 is_a: UBERON:0011216 ! organ system subdivision @@ -350358,6 +367955,8 @@ property_value: editor_note "this class was inherited from NIFSTD as part of the id: UBERON:0023900 name: piriform cortex layer 1a def: "Superficial part of plexiform layer (layer 1) of piriform cortex that receives afferents from the olfactory bulb by way of the lateral olfactory tract." [NLXANAT:091004] +subset: human_subset +subset: mouse_subset synonym: "piriform cortex layer 1a" EXACT [NLXANAT:091004] xref: NLXANAT:091004 is_a: UBERON:0011215 ! central nervous system cell part cluster @@ -350368,6 +367967,8 @@ relationship: part_of UBERON:0014277 {source="NIFSTD"} ! piriform cortex layer 1 id: UBERON:0023901 name: piriform cortex layer 1b def: "Deeper part of the plexiform (layer 1) of piriform cortex characterized by projection of association fibers from other parts of the piriform cortex and other olfactory areas." [NLXANAT:091005] +subset: human_subset +subset: mouse_subset synonym: "piriform cortex layer 1b" EXACT [NLXANAT:091005] xref: NLXANAT:091005 is_a: UBERON:0011215 ! central nervous system cell part cluster @@ -350385,6 +367986,8 @@ consider: NLXANAT:100305 id: UBERON:0023920 name: basal ganglia of rodent def: "The basal ganglia of the rodent." [NLXANAT:100311] +subset: human_subset +subset: mouse_subset synonym: "basal ganglia of rodent" EXACT [NLXANAT:100311] synonym: "rodent basal ganglia" RELATED [NLXANAT:100311] xref: NLXANAT:100311 @@ -350393,6 +367996,8 @@ is_a: UBERON:0010011 {source="NIFSTD"} ! collection of basal ganglia [Term] id: UBERON:0023927 name: subbrachial nucleus of mouse of Franklin and Paxinos 2008 +subset: human_subset +subset: mouse_subset synonym: "subbrachial nucleus of mouse of franklin and paxinos 2008" EXACT [NLXANAT:1005004] xref: NLXANAT:1005004 is_a: UBERON:0006119 {source="NIFSTD"} ! subbrachial nucleus @@ -350401,6 +368006,8 @@ is_a: UBERON:0006119 {source="NIFSTD"} ! subbrachial nucleus id: UBERON:0023928 name: postrhinal cortex of rodent of Burwell et al 1995 def: "Cortical region lying caudal to the perirhinal cortex in the rat. It encompasses the caudal levels of area 35 and the caudal portion of area 36 (ectorhinal cortex). It is bordered medially by agranular retrosplenial cortex and ventrally by the entorhinal cortex (with the exception of the caudomedial portion). The authors note that the ventral portion of the postrhinal cortex in rat may by homologous with the parahippocampal cortex in the monkey." [NLXANAT:1005005] +subset: human_subset +subset: mouse_subset synonym: "postrhinal cortex" RELATED [NLXANAT:1005005] synonym: "postrhinal cortex of rodent" RELATED [NLXANAT:1005005] synonym: "postrhinal cortex of rodent of burwell et al 1995" EXACT [NLXANAT:1005005] @@ -350413,6 +368020,8 @@ relationship: part_of UBERON:0001893 ! telencephalon id: UBERON:0023932 name: Sommer's sector def: "Part of hippocampal formation comprising area CA1 and the subiculum (pg 425, Heimer, L. The human brain and spinal cord, Springer-Verlag, 1995)." [NLXANAT:1005009] +subset: human_subset +subset: mouse_subset synonym: "sommer's sector" EXACT [NLXANAT:1005009] synonym: "sommers sector" RELATED [NLXANAT:1005009] xref: NLXANAT:1005009 @@ -350423,6 +368032,8 @@ relationship: part_of UBERON:0002421 ! hippocampal formation id: UBERON:0023934 name: olfactory bulb main glomerular layer def: "The glomerular layer of the main olfactory bulb, lying deep to the olfactory nerve layer. It contains the glomeruli, neuropil rich spheroid structures surrounded by a distinctive shell of small neuros and glial cells (Paxinos, the Rat Nervous System, 2nd ed., Academic Press, 1995)." [NLXANAT:1005011] +subset: human_subset +subset: mouse_subset synonym: "olfactory bulb main glomerular layer" EXACT [NLXANAT:1005011] xref: NLXANAT:1005011 is_a: UBERON:0005377 ! olfactory bulb glomerular layer @@ -350443,6 +368054,8 @@ consider: NLXANAT:1005012 id: UBERON:0023936 name: perirhinal cortex of Burwell et al 1995 def: "Rostral portion of the parahippocampal cortex." [NLXANAT:1005013] +subset: human_subset +subset: mouse_subset synonym: "perirhinal cortex" RELATED [NLXANAT:1005013] synonym: "perirhinal cortex of burwell et al 1995" EXACT [NLXANAT:1005013] xref: NLXANAT:1005013 @@ -350485,6 +368098,8 @@ consider: UBERON:0009951 [Term] id: UBERON:0023943 name: molecular system +subset: human_subset +subset: mouse_subset subset: non_informative synonym: "molecular system" EXACT [NLXANAT:1005020] xref: NLXANAT:1005020 @@ -350495,6 +368110,8 @@ property_value: editor_note "this class was inherited from NIFSTD as part of the id: UBERON:0023958 name: bed nuclei of the stria terminalis oval nucleus def: "Part of bed nucleus of stria terminalis, comprising a distinct, large, egg-shaped collection of neurons that, together with the juxtacapsular (Ju) and rhomboid (Rh) nuclei, encompass the anterolateral area of the BST (Ju and Swanson, 1989)." [NLXANAT:1005035] +subset: human_subset +subset: mouse_subset synonym: "bed nuclei of the stria terminalis oval nucleus" EXACT [NLXANAT:1005035] xref: NLXANAT:1005035 is_a: UBERON:0002616 ! regional part of brain @@ -350504,6 +368121,8 @@ relationship: part_of UBERON:0001880 {source="NIFSTD"} ! bed nucleus of stria te id: UBERON:0023983 name: central cervical spinocerebellar tract def: "Central cervical spinocerebellar tract." [NLXANAT:1010018] +subset: human_subset +subset: mouse_subset synonym: "central cervical spinocerebellar tract" EXACT [NLXANAT:1010018] xref: NLXANAT:1010018 is_a: UBERON:0001018 ! axon tract @@ -350513,6 +368132,8 @@ relationship: part_of UBERON:0005413 {source="NIFSTD"} ! spinocerebellar tract id: UBERON:0023984 name: rostral spinocerebellar tract def: "Originates from cells rostral to Clarke's column and sends uncrossed axons through the lateral funiculus to the cerebellum. It reaches the cerebellum partly through the brachium conjunctivum and partly through the restiform body, terminating bilaterally in the anterior lobe of the cerebellum." [NLXANAT:1010019] +subset: human_subset +subset: mouse_subset synonym: "rostral spinocerebellar tract" EXACT [NLXANAT:1010019] xref: NLXANAT:1010019 is_a: UBERON:0001018 ! axon tract @@ -350521,6 +368142,8 @@ relationship: part_of UBERON:0005413 {source="NIFSTD"} ! spinocerebellar tract [Term] id: UBERON:0023998 name: cerebellum hemispheric lobule II +subset: human_subset +subset: mouse_subset synonym: "alar central lobule" RELATED [NLXANAT:20081202] synonym: "central lobule (hII)" RELATED [NLXANAT:20081202] synonym: "hemispheric lobule ii" EXACT [NLXANAT:20081202] @@ -350536,6 +368159,8 @@ relationship: part_of UBERON:0002131 {source="NIFSTD"} ! anterior lobe of cerebe [Term] id: UBERON:0023999 name: cerebellum hemispheric lobule III +subset: human_subset +subset: mouse_subset synonym: "alar central lobule" RELATED [NLXANAT:20081203] synonym: "central lobule (hIII)" RELATED [NLXANAT:20081203] synonym: "hemispheric lobule III" EXACT [NLXANAT:20081203] @@ -350551,6 +368176,8 @@ relationship: part_of UBERON:0002131 {source="NIFSTD"} ! anterior lobe of cerebe [Term] id: UBERON:0024000 name: cerebellum hemispheric lobule IV +subset: human_subset +subset: mouse_subset synonym: "anterior quadrangular lobule" RELATED [NLXANAT:20081204] synonym: "culmen lobule (hIV)" RELATED [NLXANAT:20081204] synonym: "hemispheric lobule IV" EXACT [NLXANAT:20081204] @@ -350568,6 +368195,8 @@ relationship: part_of UBERON:0002131 {source="NIFSTD"} ! anterior lobe of cerebe [Term] id: UBERON:0024001 name: cerebellum hemispheric lobule V +subset: human_subset +subset: mouse_subset synonym: "anterior quadrangular lobule" RELATED [NLXANAT:20081205] synonym: "culmen lobule (hV)" RELATED [NLXANAT:20081205] synonym: "hemispheric lobule V" EXACT [NLXANAT:20081205] @@ -350585,6 +368214,8 @@ relationship: part_of UBERON:0002131 {source="NIFSTD"} ! anterior lobe of cerebe [Term] id: UBERON:0024003 name: cerebellum hemispheric lobule VII +subset: human_subset +subset: mouse_subset synonym: "hemispheric lobule VII" EXACT [NLXANAT:20081207] xref: NLXANAT:20081207 is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule @@ -350592,6 +368223,8 @@ is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule [Term] id: UBERON:0024009 name: cerebellum hemispheric lobule X +subset: human_subset +subset: mouse_subset synonym: "flocculus" RELATED [NLXANAT:20081213] synonym: "hemispheric lobule X" EXACT [NLXANAT:20081213] xref: NLXANAT:20081213 @@ -350602,6 +368235,8 @@ relationship: part_of UBERON:0003012 {source="NIFSTD"} ! flocculonodular lobe [Term] id: UBERON:0024037 name: vermis of the flocculonodular lobe of the cerebellum +subset: human_subset +subset: mouse_subset synonym: "flocculonodular vermis" EXACT [UBERON:cjm] synonym: "vermis of the flocculonodular lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081241] xref: NLXANAT:20081241 @@ -350610,6 +368245,8 @@ is_a: UBERON:0004720 {source="NIFSTD"} ! cerebellar vermis [Term] id: UBERON:0024043 name: rostral portion of the medial accessory olive +subset: human_subset +subset: mouse_subset synonym: "rostral portion of the medial accessory olive" EXACT HUMAN_PREFERRED [NLXANAT:20081247] xref: NLXANAT:20081247 is_a: UBERON:0002616 ! regional part of brain @@ -350620,6 +368257,8 @@ relationship: part_of UBERON:0002127 {source="NIFSTD"} ! inferior olivary comple id: UBERON:0024045 name: white matter of the cerebellar cortex def: "White matter that lies deep to the granular cell layer of the cerebellar cortex. It contains afferents to the cerebellar cortex and axons that run between the cerebellar cortex and the deep cerebellar nuclei." [NLXANAT:20081249] +subset: human_subset +subset: mouse_subset synonym: "white matter of the cerebellar cortex" EXACT HUMAN_PREFERRED [NLXANAT:20081249] xref: NLXANAT:20081249 is_a: UBERON:0019291 ! white matter of metencephalon @@ -350630,6 +368269,8 @@ relationship: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0024046 name: superficial feature part of the cerebellum +subset: human_subset +subset: mouse_subset synonym: "superficial feature part of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081250] xref: NLXANAT:20081250 is_a: UBERON:0002616 ! regional part of brain @@ -350653,6 +368294,8 @@ consider: NLXANAT:20090305 id: UBERON:0024078 name: principal anterior division of supraoptic nucleus def: "One of two divisions of the supraoptic nucleus observed in mammals, formed by the ascension of the optic chiasm to split the nucleus in two. The principal anterior division consists of a dense cluster of large cells that stain darkly in Nissl preparations adjacent to the optic chiasm, extending as far rostrally to the organum vasculosum of the lamina terminalis and caudally into the posterior hypothalamus." [NLXANAT:20090310] +subset: human_subset +subset: mouse_subset synonym: "principal anterior division of supraoptic nucleus" EXACT [NLXANAT:20090310] xref: NLXANAT:20090310 is_a: UBERON:0002616 ! regional part of brain @@ -350662,6 +368305,8 @@ relationship: part_of UBERON:0000955 ! brain id: UBERON:0024079 name: tuberal supraoptic nucleus def: "Posterior division of the supraoptic nucleus, formed by the ascension of the optic tract splitting the nucleus into two regions. The tuberal SON lies along the posterior tuber cinereum of the hypothalamus. In some species, some neurons lie under the optic chiasm." [NLXANAT:20090311] +subset: human_subset +subset: mouse_subset synonym: "retrochiasmatic subdivision" RELATED [NLXANAT:20090311] synonym: "tuberal supraoptic nucleus" EXACT [NLXANAT:20090311] xref: NLXANAT:20090311 @@ -350686,6 +368331,8 @@ consider: NLXANAT:20090406 id: UBERON:0024090 name: chemoarchitectural part of brain def: "Regional part of an anatomical region that is revealed by the use of a stain that reveals chemoarchitecture." [NLXANAT:20090501] +subset: human_subset +subset: mouse_subset synonym: "chemoarchitectural part" EXACT [NLXANAT:20090501] xref: NLXANAT:20090501 is_a: UBERON:0002616 ! regional part of brain @@ -350695,6 +368342,8 @@ relationship: part_of UBERON:0000955 ! brain id: UBERON:0024110 name: basis pontis def: "The basis pontis is the anterior portion of the pons." [Wikipedia:Basilar_part_of_pons] +subset: human_subset +subset: mouse_subset synonym: "basis pontis" EXACT HUMAN_PREFERRED [NLXANAT:20090704] xref: NLXANAT:20090704 xref: Wikipedia:Basilar_part_of_pons @@ -350714,6 +368363,8 @@ id: UBERON:0024151 name: tegmentum def: "The ventral topographic division of the midbrain; the dorsal topographic division is the tectum. Meckel (1817; see English translation, 1832, vol. 2, p. 467) apparently introduced the term and roughly its definition here for macrodissected adult humans, except he excluded the cerebral peduncle (Tarin, 1753), a white matter tract at the base of the midbrain, which is still common today but is included here. As defined here, tegmentum refers to the whole of the midbrain (Baer, 1837) excluding the tectum but including the pretectal region (Scalia, 1972); see Swanson (2000, pp. 522, 526). Usage of this term is very complex, inconsistent, and illogical; see for example Crosby et al. (1962, pp. 221, 260, 262), Carpenter (1976, p. 367 ff.)." [BIRNLEX:1031] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "tegmentum" EXACT HUMAN_PREFERRED [BIRNLEX:1031] xref: BIRNLEX:1031 xref: Wikipedia:Tegmentum @@ -350751,6 +368402,8 @@ consider: BIRNLEX:1063 [Term] id: UBERON:0024183 name: inferior transverse frontopolar gyrus +subset: human_subset +subset: mouse_subset synonym: "inferior transverse frontopolar gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1064] xref: BIRNLEX:1064 xref: FMA:274414 @@ -350762,6 +368415,8 @@ relationship: part_of UBERON:0022730 {source="NIFSTD"} ! transverse frontopolar [Term] id: UBERON:0024193 name: medial transverse frontopolar gyrus +subset: human_subset +subset: mouse_subset synonym: "medial transverse frontopolar gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1074] xref: BIRNLEX:1074 xref: neuronames:823 @@ -350772,6 +368427,8 @@ relationship: part_of UBERON:0022730 {source="NIFSTD"} ! transverse frontopolar [Term] id: UBERON:0024201 name: superior transverse frontopolar gyrus +subset: human_subset +subset: mouse_subset synonym: "superior transverse frontopolar gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1082] xref: BIRNLEX:1082 xref: FMA:274408 @@ -350862,6 +368519,8 @@ consider: BIRNLEX:1265 [Term] id: UBERON:0024382 name: ventral nerve root of lumbar spinal cord +subset: human_subset +subset: mouse_subset synonym: "anterior nerve root of lumbar spinal cord" RELATED [BIRNLEX:1266] synonym: "ventral nerve root of lumbar spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1266] xref: BIRNLEX:1266 @@ -351049,6 +368708,8 @@ consider: BIRNLEX:1715 [Term] id: UBERON:0024900 name: left sub-lobar region +subset: human_subset +subset: mouse_subset synonym: "left sub-lobar region" EXACT HUMAN_PREFERRED [BIRNLEX:1789] xref: BIRNLEX:1789 is_a: UBERON:0023255 {source="NIFSTD"} ! sub-lobar region @@ -351057,6 +368718,8 @@ relationship: located_in UBERON:0002812 {source="NIFSTD"} ! left cerebral hemisp [Term] id: UBERON:0024901 name: right sub-lobar region +subset: human_subset +subset: mouse_subset synonym: "right sub-lobar region" EXACT HUMAN_PREFERRED [BIRNLEX:1790] xref: BIRNLEX:1790 is_a: UBERON:0023255 {source="NIFSTD"} ! sub-lobar region @@ -351082,6 +368745,8 @@ consider: UBERON:0001869 id: UBERON:0024914 name: circuit part of central nervous system def: "A collection of neuronal components interacting in a functional circuit. A neural circuit is bounded by the nervous sytem regions in which its participating neuronal components are contained (BB)." [BIRNLEX:2513] +subset: human_subset +subset: mouse_subset synonym: "circuit part of central nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:2513] xref: BIRNLEX:2513 is_a: UBERON:0000073 ! regional part of nervous system @@ -351092,6 +368757,8 @@ relationship: part_of UBERON:0001017 ! central nervous system id: UBERON:0024940 name: ganglion part of peripheral nervous system def: "A spatially aggregated collection of nerve cell body parts in the PNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections. (CUMBO)." [BIRNLEX:2548] +subset: human_subset +subset: mouse_subset synonym: "ganglion part of peripheral nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:2548] xref: BIRNLEX:2548 is_a: UBERON:0000073 ! regional part of nervous system @@ -351145,6 +368812,8 @@ consider: BIRNLEX:2708 [Term] id: UBERON:0025096 name: superior calcarine sulcus +subset: human_subset +subset: mouse_subset synonym: "sulcus calcarinus superior" RELATED [BIRNLEX:4014] synonym: "superior calcarine sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4014] synonym: "superior ramus of calcarine fissure" RELATED [BIRNLEX:4014] @@ -351158,6 +368827,8 @@ relationship: part_of UBERON:0002021 {source="NIFSTD"} ! occipital lobe [Term] id: UBERON:0025102 name: inferior occipital sulcus +subset: human_subset +subset: mouse_subset synonym: "inferior occipital sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4020] synonym: "sulcus occipitalis inferior" RELATED [BIRNLEX:4020] xref: BIRNLEX:4020 @@ -351169,6 +368840,8 @@ relationship: part_of UBERON:0002021 {source="NIFSTD"} ! occipital lobe [Term] id: UBERON:0025103 name: inferior calcarine sulcus +subset: human_subset +subset: mouse_subset synonym: "inferior calcarine sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4021] synonym: "inferior ramus of calcarine fissure" RELATED [BIRNLEX:4021] synonym: "lower calcarine sulcus" RELATED [BIRNLEX:4021] @@ -351182,6 +368855,8 @@ relationship: part_of UBERON:0002021 {source="NIFSTD"} ! occipital lobe [Term] id: UBERON:0025104 name: ectocalcarine sulcus +subset: human_subset +subset: mouse_subset synonym: "ectocalcarine sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4022] synonym: "external calcarine fissure" RELATED [BIRNLEX:4022] synonym: "external calcarine sulcus" RELATED [BIRNLEX:4022] @@ -351253,6 +368928,8 @@ consider: BIRNLEX:742 [Term] id: UBERON:0025261 name: thalamic fiber tract +subset: human_subset +subset: mouse_subset synonym: "thalamic fiber tracts" EXACT HUMAN_PREFERRED [BIRNLEX:749] xref: BIRNLEX:749 is_a: UBERON:0011591 ! tract of diencephalon @@ -351329,6 +369006,8 @@ id: UBERON:0025525 name: motor system def: "The part of the central nervous system that is involved with movement." [Wikipedia:Motor_system] comment: It consists of the pyramidal and extrapyramidal system +subset: human_subset +subset: mouse_subset synonym: "motor system" EXACT [NLXANAT:090805] xref: NLXANAT:090805 is_a: UBERON:0023879 {source="NIFSTD"} ! neural system @@ -351337,6 +369016,8 @@ is_a: UBERON:0023879 {source="NIFSTD"} ! neural system id: UBERON:0025533 name: proprioceptive system def: "The sensory system for the sense of proprioception." [NLXANAT:090814] +subset: human_subset +subset: mouse_subset synonym: "proprioceptive system" EXACT [NLXANAT:090814] xref: NLXANAT:090814 is_a: UBERON:0023879 ! neural system @@ -351347,6 +369028,8 @@ relationship: capable_of GO:0019230 ! proprioception [Term] id: UBERON:0025534 name: sensorimotor system +subset: human_subset +subset: mouse_subset synonym: "sensorimotor" BROAD [NLXANAT:090815] xref: NLXANAT:090815 is_a: UBERON:0023879 {source="NIFSTD"} ! neural system @@ -351355,6 +369038,8 @@ is_a: UBERON:0023879 {source="NIFSTD"} ! neural system id: UBERON:0025581 name: perirhinal cortex of primate of Burwell et al 1995 def: "Cortical region near the rhinal sulcus in primate encompassing Brodmann's areas 35 and 36." [NLXANAT:1005014] +subset: human_subset +subset: mouse_subset synonym: "perirhinal cortex of primate" RELATED [UBERON:cjm] synonym: "perirhinal cortex of primate of burwell et al 1995" EXACT [NLXANAT:1005014] synonym: "primate perirhinal cortex" RELATED [UBERON:cjm] @@ -351365,6 +369050,8 @@ is_a: UBERON:0023936 {source="NIFSTD"} ! perirhinal cortex of Burwell et al 1995 id: UBERON:0025584 name: perirhinal cortex of rodent of Burwell et al 1995 def: "Cortical region surrounding the posterior rhinal sulcus in the rat, encompassing areas 35 and 36 in the rat. Rostraly, it abuts the posterior insular cortex." [NLXANAT:1005017] +subset: human_subset +subset: mouse_subset synonym: "perirhinal cortex of rodent" RELATED [NLXANAT:1005017] synonym: "perirhinal cortex of rodent of burwell et al 1995" EXACT [NLXANAT:1005017] synonym: "rodent perirhinal cortex" RELATED [NLXANAT:1005017] @@ -351376,6 +369063,8 @@ relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex id: UBERON:0025588 name: histaminergic system def: "Any molecule, protein, cell, tissue or organ that is related to histamine." [NLXANAT:1005021] +subset: human_subset +subset: mouse_subset synonym: "histaminergic system" EXACT [NLXANAT:1005021] xref: NLXANAT:1005021 is_a: UBERON:0023943 ! molecular system @@ -351387,6 +369076,8 @@ relationship: capable_of GO:0001692 ! histamine metabolic process id: UBERON:0025589 name: catecholamine system def: "Any molecule, protein, cell, tissue or organ that is related to the catecholamines." [NLXANAT:1005022] +subset: human_subset +subset: mouse_subset synonym: "catecholamine system" EXACT [NLXANAT:1005022] synonym: "catecholaminergic system" RELATED [NLXANAT:1005022] xref: NLXANAT:1005022 @@ -351399,6 +369090,8 @@ relationship: capable_of GO:0006584 ! catecholamine metabolic process id: UBERON:0025591 name: gABAergic system def: "Any molecule, protein, cell, tissue or organ that is related to GABA." [NLXANAT:1005024] +subset: human_subset +subset: mouse_subset synonym: "gabaergic system" EXACT [NLXANAT:1005024] xref: NLXANAT:1005024 is_a: UBERON:0023943 ! molecular system @@ -351410,6 +369103,8 @@ relationship: capable_of GO:0009448 ! gamma-aminobutyric acid metabolic process id: UBERON:0025592 name: glutamatergic system def: "Any molecule, protein, cell, tissue or organ that is related to glutamate (when in the role of a neurotransmitter)." [NLXANAT:1005025] +subset: human_subset +subset: mouse_subset synonym: "glutamatergic system" EXACT [NLXANAT:1005025] xref: NLXANAT:1005025 is_a: UBERON:0023943 ! molecular system @@ -351421,6 +369116,8 @@ relationship: capable_of GO:0006536 ! glutamate metabolic process id: UBERON:0025593 name: serotonergic system def: "Any molecule, protein, cell, tissue or organ that is related to serotonin." [NLXANAT:1005026] +subset: human_subset +subset: mouse_subset synonym: "5-ht system" RELATED [NLXANAT:1005026] synonym: "5ht system" RELATED [NLXANAT:1005026] synonym: "serotonergic system" EXACT [NLXANAT:1005026] @@ -351435,6 +369132,8 @@ relationship: capable_of GO:0042428 ! serotonin metabolic process id: UBERON:0025595 name: cholinergic system def: "Any molecule, protein, cell, tissue or organ that is related to acetylcholine." [NLXANAT:1005028] +subset: human_subset +subset: mouse_subset synonym: "acetylcholine system" RELATED [NLXANAT:1005028] synonym: "ach system" RELATED [NLXANAT:1005028] synonym: "cholinergic system" EXACT [NLXANAT:1005028] @@ -351455,6 +369154,8 @@ consider: NLXANAT:1010010 [Term] id: UBERON:0025677 name: paravermis parts of the cerebellar cortex +subset: human_subset +subset: mouse_subset synonym: "paravermis parts of the cerebellar cortex" EXACT HUMAN_PREFERRED [NLXANAT:20081237] synonym: "pars intermedia" RELATED [NLXANAT:20081237] xref: NLXANAT:20081237 @@ -351464,6 +369165,8 @@ relationship: part_of UBERON:0004006 {source="cjm"} ! cerebellum intermediate zo [Term] id: UBERON:0025736 name: chemoarchitectural part of striatum +subset: human_subset +subset: mouse_subset synonym: "chemoarchitectural part of neostriatum" EXACT [NLXANAT:20090502] xref: NLXANAT:20090502 is_a: UBERON:0024090 ! chemoarchitectural part of brain @@ -351481,6 +369184,8 @@ consider: NLXANAT:20090510 [Term] id: UBERON:0025763 name: rostral sulcus +subset: human_subset +subset: mouse_subset synonym: "rostral sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1012] xref: BIRNLEX:1012 xref: UMLS:C0262327 @@ -351497,6 +369202,8 @@ consider: BIRNLEX:1013 [Term] id: UBERON:0025768 name: posterior middle temporal sulcus +subset: human_subset +subset: mouse_subset synonym: "posterior middle temporal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1017] xref: BIRNLEX:1017 xref: neuronames:133 @@ -351508,6 +369215,8 @@ relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0025772 name: spur of arcuate sulcus +subset: human_subset +subset: mouse_subset synonym: "spur of arcuate sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1021] xref: BIRNLEX:1021 xref: neuronames:830 @@ -351545,6 +369254,8 @@ consider: BIRNLEX:1078 [Term] id: UBERON:0025829 name: anterior parieto-occipital sulcus +subset: human_subset +subset: mouse_subset synonym: "anterior parieto-occipital sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1079] synonym: "medial parieto-occipital fissure" RELATED [BIRNLEX:1079] synonym: "sulcus parieto-occipitalis anterior" RELATED [BIRNLEX:1079] @@ -351564,6 +369275,8 @@ consider: BIRNLEX:1098 [Term] id: UBERON:0025883 name: superior ramus of arcuate sulcus +subset: human_subset +subset: mouse_subset synonym: "superior ramus of arcuate sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1132] xref: BIRNLEX:1132 xref: UMLS:C0262339 @@ -351588,6 +369301,8 @@ consider: BIRNLEX:1149 id: UBERON:0025903 name: principal sulcus def: "Sulcus in the frontal lobe of the macaque. (Brain Info)." [BIRNLEX:1154] +subset: human_subset +subset: mouse_subset synonym: "principal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1154] xref: BIRNLEX:1154 xref: neuronames:66 @@ -351655,6 +369370,8 @@ consider: BIRNLEX:1254 [Term] id: UBERON:0026006 name: dorsal nerve root of lumbar spinal cord +subset: human_subset +subset: mouse_subset synonym: "dorsal nerve root of lumbar spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1259] synonym: "posterior nerve root of lumbar spinal cord" RELATED [BIRNLEX:1259] xref: BIRNLEX:1259 @@ -351727,6 +369444,8 @@ consider: BIRNLEX:1371 [Term] id: UBERON:0026137 name: annectant gyrus +subset: human_subset +subset: mouse_subset synonym: "annectant gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1391] xref: BIRNLEX:1391 xref: neuronames:153 @@ -351745,6 +369464,8 @@ consider: BIRNLEX:1406 id: UBERON:0026246 name: sacral spinal cord white matter subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "sacral spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:1500] xref: BIRNLEX:1500 is_a: UBERON:0002318 ! white matter of spinal cord @@ -351772,6 +369493,8 @@ consider: BIRNLEX:1525 id: UBERON:0026293 name: thoracic spinal cord gray commissure subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "thoracic spinal cord gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:1547] xref: BIRNLEX:1547 is_a: UBERON:0014631 ! dorsal gray commissure of spinal cord @@ -351799,6 +369522,8 @@ consider: BIRNLEX:1578 [Term] id: UBERON:0026382 name: inferior ramus of arcuate sulcus +subset: human_subset +subset: mouse_subset synonym: "inferior ramus of arcuate sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1635] xref: BIRNLEX:1635 xref: neuronames:65 @@ -351809,6 +369534,8 @@ relationship: part_of UBERON:0034671 ! arcuate sulcus [Term] id: UBERON:0026384 name: lateral orbital sulcus +subset: human_subset +subset: mouse_subset synonym: "lateral orbital sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1637] xref: BIRNLEX:1637 xref: neuronames:81 @@ -351820,6 +369547,8 @@ relationship: part_of UBERON:0016525 ! frontal lobe id: UBERON:0026386 name: lumbar spinal cord white matter subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lumbar spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:1639] xref: BIRNLEX:1639 is_a: UBERON:0002318 ! white matter of spinal cord @@ -351832,6 +369561,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0026391 name: medial orbital sulcus +subset: human_subset +subset: mouse_subset synonym: "medial orbital sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1644] xref: BIRNLEX:1644 xref: neuronames:82 @@ -351863,6 +369594,8 @@ consider: UMLS:C0931696 [Term] id: UBERON:0026541 name: dorsomedial subnucleus of solitary tract +subset: human_subset +subset: mouse_subset synonym: "dorsomedial subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:1799] synonym: "nucleus of the solitary tract, dorsomedial part" RELATED [BIRNLEX:1799] xref: BIRNLEX:1799 @@ -351875,6 +369608,8 @@ relationship: part_of UBERON:0009050 ! nucleus of solitary tract id: UBERON:0026546 name: principal neuronal circuit def: "A neuronal circuit bearing a principal projection neuron whose axon extends beyond the region where its soma is located to synapse on the dendrites of cells in other regions of the nervous system (BB)." [BIRNLEX:2514] +subset: human_subset +subset: mouse_subset synonym: "principal neuronal circuit" EXACT HUMAN_PREFERRED [BIRNLEX:2514] xref: BIRNLEX:2514 is_a: UBERON:0024914 {source="NIFSTD"} ! circuit part of central nervous system @@ -351883,6 +369618,8 @@ is_a: UBERON:0024914 {source="NIFSTD"} ! circuit part of central nervous system id: UBERON:0026547 name: intrinsic neuronal circuit def: "A neuronal circuit where all the participating neurons are bounded within a defined and limited region of the nervous system.(BB)." [BIRNLEX:2515] +subset: human_subset +subset: mouse_subset synonym: "intrinsic neuronal circuit" EXACT HUMAN_PREFERRED [BIRNLEX:2515] xref: BIRNLEX:2515 is_a: UBERON:0024914 {source="NIFSTD"} ! circuit part of central nervous system @@ -351898,6 +369635,8 @@ consider: BIRNLEX:2541 id: UBERON:0026584 name: tympanic canal def: "A minute canal that passes from the petrous portion of the temporal bone between the jugular fossa and carotid canal to the floor of the tympanic cavity and transmits the tympanic branch of the glossopharyngeal nerve." [http://www.dictionary.com/browse/tympanic-canal] +subset: human_subset +subset: mouse_subset synonym: "canaliculus tympanicus" EXACT OMO:0003011 [FMA:TA] synonym: "jacobson's canaliculus" EXACT [FMA:56460] synonym: "tympanic canal" EXACT HUMAN_PREFERRED [BIRNLEX:2561] @@ -351911,6 +369650,8 @@ relationship: channel_for UBERON:0036216 ! tympanic nerve id: UBERON:0026586 name: vestibular canal def: "The division of the spiral canal of the cochlea lying above the spiral lamina and the vestibular membrane." [http://www.dictionary.com/browse/vestibular-canal] +subset: human_subset +subset: mouse_subset synonym: "canaliculus vestibuli" EXACT OMO:0003011 [FMA:TA] synonym: "vestibular canal" EXACT HUMAN_PREFERRED [BIRNLEX:2563] synonym: "vestibular canaliculus" EXACT [FMA:56451] @@ -351931,6 +369672,8 @@ consider: UMLS:C1186240 [Term] id: UBERON:0026663 name: dorsolateral subnucleus of solitary tract +subset: human_subset +subset: mouse_subset synonym: "dorsolateral subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:2659] synonym: "nucleus of the solitary tract, dorsolateral part" RELATED [BIRNLEX:2659] xref: BIRNLEX:2659 @@ -351942,6 +369685,8 @@ relationship: part_of UBERON:0009050 ! nucleus of solitary tract [Term] id: UBERON:0026666 name: parvocellular subnucleus of solitary tract +subset: human_subset +subset: mouse_subset synonym: "parvicellular subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:2663] xref: BIRNLEX:2663 xref: neuronames:746 @@ -351966,6 +369711,8 @@ consider: BIRNLEX:2699 [Term] id: UBERON:0026719 name: intermediate frontal sulcus +subset: human_subset +subset: mouse_subset synonym: "intermediate frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4006] synonym: "sulcus frontalis intermedius" RELATED [BIRNLEX:4006] xref: BIRNLEX:4006 @@ -351984,6 +369731,8 @@ consider: BIRNLEX:4007 id: UBERON:0026721 name: medial precentral sulcus def: "A superficial feature of the frontal lobe that extends from the dorsal surface onto the medial surface of the superior frontal gyrus (Ono-90). (NN)." [BIRNLEX:4008] +subset: human_subset +subset: mouse_subset synonym: "medial precentral sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4008] xref: BIRNLEX:4008 xref: neuronames:1610 @@ -351994,6 +369743,8 @@ relationship: part_of UBERON:0016525 ! frontal lobe id: UBERON:0026722 name: transverse parietal sulcus def: "A sulcus in the human parietal lobe that branches dorsally from the intraparietal sulcus (Savel'ev-96). (NN)." [BIRNLEX:4009] +subset: human_subset +subset: mouse_subset synonym: "transverse parietal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4009] xref: BIRNLEX:4009 xref: neuronames:2295 @@ -352003,6 +369754,8 @@ relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0026723 name: inferior parietal sulcus +subset: human_subset +subset: mouse_subset synonym: "inferior parietal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4010] xref: BIRNLEX:4010 is_a: UBERON:0035927 ! sulcus of parietal lobe @@ -352012,6 +369765,8 @@ relationship: part_of UBERON:0001872 ! parietal lobe id: UBERON:0026724 name: superior parietal sulcus def: "A superficial feature of the parietal lobe that extends from the dorsal surface of the superior parietal lobule across the margin of the parietal lobe into the precuneus (Ono-90). (NN)." [BIRNLEX:4011] +subset: human_subset +subset: mouse_subset synonym: "superior parietal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4011] xref: BIRNLEX:4011 xref: neuronames:1611 @@ -352022,6 +369777,8 @@ relationship: part_of UBERON:0001872 ! parietal lobe id: UBERON:0026725 name: angular sulcus def: "A superficial feature of the parietal lobe. It is the portion of the superior temporal sulcus that extends into the angular gyrus (Ono-90). (NN)." [BIRNLEX:4012] +subset: human_subset +subset: mouse_subset synonym: "angular sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4012] xref: BIRNLEX:4012 xref: HBA:9384 @@ -352035,6 +369792,8 @@ relationship: part_of UBERON:0002734 {source="NIFSTD"} ! superior temporal sulcu [Term] id: UBERON:0026760 name: inferior sagittal sulcus +subset: human_subset +subset: mouse_subset synonym: "inferior sagittal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4047] xref: BIRNLEX:4047 is_a: UBERON:0034968 ! sagittal sulcus @@ -352042,6 +369801,8 @@ is_a: UBERON:0034968 ! sagittal sulcus [Term] id: UBERON:0026761 name: superior sagittal sulcus +subset: human_subset +subset: mouse_subset synonym: "superior sagittal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4048] xref: BIRNLEX:4048 is_a: UBERON:0034968 ! sagittal sulcus @@ -352056,6 +369817,8 @@ consider: BIRNLEX:4049 [Term] id: UBERON:0026765 name: Hadjikhani et al. (1998) visuotopic partition scheme region +subset: human_subset +subset: mouse_subset synonym: "Hadjikhani et al. (1998) visuotopic partition scheme region" EXACT HUMAN_PREFERRED [BIRNLEX:4052] synonym: "Hadjikhani visuotopic areas" RELATED [BIRNLEX:4052] synonym: "Hadjikhani visuotopic parcellation scheme" RELATED [BIRNLEX:4052] @@ -352068,6 +369831,8 @@ relationship: part_of UBERON:0002021 ! occipital lobe id: UBERON:0026775 name: Tootell and Hadjikhani (2001) LOC/LOP complex def: "Cortical parcel in occipital cortex of human according to Tootell and Hadjikhani 2001 that is activated preferentially by more peripheral stimuli compared to the adjacent lateral occipital central parcel." [BIRNLEX:4062] +subset: human_subset +subset: mouse_subset synonym: "tootell and Hadjikhani (2001) loc/lop complex" EXACT HUMAN_PREFERRED [BIRNLEX:4062] xref: BIRNLEX:4062 is_a: UBERON:0002616 ! regional part of brain @@ -352076,6 +369841,8 @@ relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0026776 name: Press, Brewer, Dougherty, Wade and Wandell (2001) visuotopic area V7 +subset: human_subset +subset: mouse_subset synonym: "press, brewer, dougherty, wade and wandell (2001) visuotopic area v7" EXACT HUMAN_PREFERRED [BIRNLEX:4063] xref: BIRNLEX:4063 is_a: UBERON:0002616 ! regional part of brain @@ -352084,6 +369851,8 @@ relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0026777 name: Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) prefrontal cortical areas" RELATED [BIRNLEX:4064] synonym: "ongur, price, and ferry (2003) prefrontal cortical parcellation scheme" RELATED [BIRNLEX:4064] synonym: "ongur, price, and ferry (2003) prefrontal cortical partition scheme" RELATED [BIRNLEX:4064] @@ -352151,6 +369920,8 @@ consider: BIRNLEX:933 [Term] id: UBERON:0027061 name: isthmus of cingulate cortex +subset: human_subset +subset: mouse_subset synonym: "isthmus of cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:943] xref: BIRNLEX:943 is_a: UBERON:0002616 ! regional part of brain @@ -352187,6 +369958,8 @@ consider: BIRNLEX:988 [Term] id: UBERON:0027109 name: lateral eminence of hypophysis +subset: human_subset +subset: mouse_subset synonym: "lateral eminence" BROAD [] synonym: "lateral eminence of hypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:994] xref: BIRNLEX:994 @@ -352200,6 +369973,8 @@ relationship: part_of UBERON:0000007 {source="NIFSTD"} ! pituitary gland [Term] id: UBERON:0027113 name: anterior middle temporal sulcus +subset: human_subset +subset: mouse_subset synonym: "anterior middle temporal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:998] xref: BIRNLEX:998 xref: neuronames:132 @@ -352211,6 +369986,8 @@ relationship: part_of UBERON:0001871 ! temporal lobe id: UBERON:0027221 name: adrenergic system def: "Any molecule, protein, cell, tissue or organ that is related to epinephrine (also known as adrenaline)." [NLXANAT:1005023] +subset: human_subset +subset: mouse_subset synonym: "adrenergic system" EXACT [NLXANAT:1005023] xref: NLXANAT:1005023 is_a: UBERON:0025589 {source="NIFSTD"} ! catecholamine system @@ -352219,6 +369996,8 @@ is_a: UBERON:0025589 {source="NIFSTD"} ! catecholamine system id: UBERON:0027225 name: noradrenergic system def: "Any molecule, protein, cell, tissue or organ that is related to norepinephrine (also known as noradrenaline)." [NLXANAT:1005027] +subset: human_subset +subset: mouse_subset synonym: "noradrenergic system" EXACT [NLXANAT:1005027] xref: NLXANAT:1005027 is_a: UBERON:0025589 {source="NIFSTD"} ! catecholamine system @@ -352234,6 +370013,8 @@ consider: NLXANAT:1005029 id: UBERON:0027239 name: dopaminergic system def: "Any molecule, protein, cell, tissue or organ that is related to dopamine." [NLXANAT:100597] +subset: human_subset +subset: mouse_subset synonym: "dopaminergic system" EXACT [NLXANAT:100597] xref: BTO:0003954 xref: NLXANAT:100597 @@ -352249,6 +370030,8 @@ consider: NLXANAT:1010003 [Term] id: UBERON:0027244 name: striosomal part of body of caudate nucleus +subset: human_subset +subset: mouse_subset synonym: "striosomal part of body of caudate nucleus" EXACT [NLXANAT:1010004] xref: NLXANAT:1010004 is_a: UBERON:0029004 ! striosomal part of caudate nucleus @@ -352260,6 +370043,8 @@ relationship: part_of UBERON:0002630 ! body of caudate nucleus id: UBERON:0027245 name: matrix part of head of caudate nucleus def: "Matrix compartment located in the head of the caudate nucleus." [NLXANAT:1010005] +subset: human_subset +subset: mouse_subset synonym: "matrix compartment of head of caudate nucleus" EXACT [] synonym: "matrix part of head of caudate nucleus" EXACT [NLXANAT:1010005] xref: NLXANAT:1010005 @@ -352272,6 +370057,8 @@ relationship: part_of UBERON:0002626 ! head of caudate nucleus id: UBERON:0027246 name: matrix part of tail of caudate nucleus def: "Matrix compartment located in the tail of the caudate nucleus." [NLXANAT:1010006] +subset: human_subset +subset: mouse_subset synonym: "matrix compartment of tail of caudate nucleus" EXACT [] synonym: "matrix part of tail of caudate nucleus" EXACT [NLXANAT:1010006] xref: NLXANAT:1010006 @@ -352291,6 +370078,8 @@ consider: NLXANAT:1010007 id: UBERON:0027285 name: paravermis lobule area subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "paravermis of cerebellum" EXACT [DHBA:12384] synonym: "regional parts of the paravermal lobules" EXACT HUMAN_PREFERRED [NLXANAT:20081214] xref: DHBA:12384 @@ -352304,6 +370093,8 @@ property_value: editor_note "consider merging" xsd:string [Term] id: UBERON:0027309 name: paravermis of the posterior lobe of the cerebellum +subset: human_subset +subset: mouse_subset synonym: "paravermis of the posterior lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081238] synonym: "paravermis, posterior lobe portion" EXACT [DHBA:12386] xref: DHBA:12386 @@ -352313,6 +370104,8 @@ is_a: UBERON:0025677 {source="NIFSTD"} ! paravermis parts of the cerebellar cort [Term] id: UBERON:0027310 name: paravermis of the anterior lobe of the cerebellum +subset: human_subset +subset: mouse_subset synonym: "paravermis of the anterior lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081239] synonym: "paravermis, anterior lobe portion" EXACT [DHBA:12385] xref: DHBA:12385 @@ -352329,6 +370122,8 @@ consider: NLXANAT:20081243 [Term] id: UBERON:0027331 name: flocculonodular lobe, hemisphere portion +subset: human_subset +subset: mouse_subset synonym: "hemispheric part of the flocculonodular lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081260] xref: NLXANAT:20081260 is_a: UBERON:0002749 ! regional part of cerebellar cortex @@ -352342,6 +370137,8 @@ relationship: part_of UBERON:0003012 ! flocculonodular lobe id: UBERON:0027333 name: arbor vitae def: "The white matter contained within the cerebellum, lying deep to the granule cell layer in the cerebellar cortex, excluding the parts of the cerebellar peduncles that extend outside of the cerebellum. The deep cerebellar nuclei are embedded within the arbor vitae." [NLXANAT:20090101] +subset: human_subset +subset: mouse_subset synonym: "arbor vitae" EXACT HUMAN_PREFERRED [NLXANAT:20090101] xref: neuronames:692 xref: NLXANAT:20090101 @@ -352358,6 +370155,8 @@ consider: NLXANAT:20090309 id: UBERON:0027368 name: matrix compartment def: "The larger of two chemoarchitectural compartments identified in the neostriatum through differential staining for various biochemical markers. It usually is identified through differentially high staining for acetylcholinesterase and calbinin D28K." [NLXANAT:20090503] +subset: human_subset +subset: mouse_subset synonym: "matrix" RELATED [NLXANAT:20090503] synonym: "matrix compartment" EXACT [NLXANAT:20090503] xref: NLXANAT:20090503 @@ -352367,6 +370166,8 @@ is_a: UBERON:0025736 {source="NIFSTD"} ! chemoarchitectural part of striatum id: UBERON:0027371 name: striosome def: "One of two compartments identified in the neostriatum, particularly the caudate nucleus, on the basis of differential staining for several biochemical markers such as acetylcholinesterase and calbindin. In individual sections, the striosomes appear as small patches of differentially high or low staining activity. In three dimensions, they form a 3D labyrinth extending throughout the caudate nucleus and in the putamen." [NLXANAT:20090506] +subset: human_subset +subset: mouse_subset synonym: "striosomal compartment" EXACT [NLXANAT:20090506] synonym: "striosomal part" RELATED [] synonym: "striosome" EXACT [NLXANAT:20090506] @@ -352399,6 +370200,8 @@ consider: BIRNLEX:1071 [Term] id: UBERON:0027513 name: posterior superior frontal sulcus +subset: human_subset +subset: mouse_subset synonym: "posterior superior frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1130] xref: BIRNLEX:1130 is_a: UBERON:0000464 ! anatomical space @@ -352478,6 +370281,8 @@ consider: BIRNLEX:1308 [Term] id: UBERON:0027716 name: anterior superior frontal sulcus +subset: human_subset +subset: mouse_subset synonym: "anterior superior frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1338] synonym: "anterior superior frontal sulcus" RELATED [NeuroNames:838] synonym: "polar notch" RELATED [NeuroNames:838] @@ -352525,6 +370330,8 @@ consider: BIRNLEX:1382 [Term] id: UBERON:0027768 name: suprachiasmatic nucleus dorsomedial part +subset: human_subset +subset: mouse_subset synonym: "suprachiasmatic nucleus dorsomedial part" EXACT HUMAN_PREFERRED [BIRNLEX:1390] xref: BIRNLEX:1390 xref: HBA:4591 @@ -352534,6 +370341,8 @@ relationship: part_of UBERON:0002034 ! suprachiasmatic nucleus [Term] id: UBERON:0027771 name: suprachiasmatic nucleus ventrolateral part +subset: human_subset +subset: mouse_subset synonym: "suprachiasmatic nucleus ventrolateral part" EXACT HUMAN_PREFERRED [BIRNLEX:1393] xref: BIRNLEX:1393 xref: HBA:4592 @@ -352593,6 +370402,8 @@ consider: BIRNLEX:2530 id: UBERON:0028194 name: spiral prominence of cochlear duct def: "A projecting portion of the spiral ligament of the cochlea, bounding the lower edge of the stria vascularis and containing within it a blood vessel, the vas prominens." [http://medical-dictionary.thefreedictionary.com/spiral+prominence+of+cochlear+duct] +subset: human_subset +subset: mouse_subset synonym: "prominentia spiralis ductus cochlearis" EXACT OMO:0003011 [http://medical-dictionary.thefreedictionary.com/spiral+prominence+of+cochlear+duct] synonym: "spiral prominence" BROAD [EMAPA:35799, MA:0003003] synonym: "spiral prominence of cochlea" EXACT HUMAN_PREFERRED [BIRNLEX:2532] @@ -352652,6 +370463,8 @@ consider: BIRNLEX:2704 [Term] id: UBERON:0028395 name: calcarine sulcus (dorsal) +subset: human_subset +subset: mouse_subset synonym: "calcarine sulcus (dorsal)" EXACT HUMAN_PREFERRED [BIRNLEX:4050] xref: BIRNLEX:4050 is_a: UBERON:0000464 ! anatomical space @@ -352660,6 +370473,8 @@ relationship: part_of UBERON:0002586 ! calcarine sulcus [Term] id: UBERON:0028396 name: calcarine sulcus (ventral) +subset: human_subset +subset: mouse_subset synonym: "calcarine sulcus (ventral)" EXACT HUMAN_PREFERRED [BIRNLEX:4051] xref: BIRNLEX:4051 is_a: UBERON:0000464 ! anatomical space @@ -352668,6 +370483,8 @@ relationship: part_of UBERON:0002586 ! calcarine sulcus [Term] id: UBERON:0028398 name: Hadjikhani et al. (1998) visuotopic area V1d +subset: human_subset +subset: mouse_subset synonym: "Hadjikhani et al. (1998) visuotopic area v1d" EXACT HUMAN_PREFERRED [BIRNLEX:4053] xref: BIRNLEX:4053 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region @@ -352675,6 +370492,8 @@ is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic par [Term] id: UBERON:0028399 name: Hadjikhani et al. (1998) visuotopic area V1v +subset: human_subset +subset: mouse_subset synonym: "Hadjikhani et al. (1998) visuotopic area v1v" EXACT HUMAN_PREFERRED [BIRNLEX:4054] xref: BIRNLEX:4054 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region @@ -352682,6 +370501,8 @@ is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic par [Term] id: UBERON:0028401 name: Hadjikhani et al. (1998) visuotopic area V2v +subset: human_subset +subset: mouse_subset synonym: "Hadjikhani et al. (1998) visuotopic area v2v" EXACT HUMAN_PREFERRED [BIRNLEX:4056] xref: BIRNLEX:4056 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region @@ -352689,6 +370510,8 @@ is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic par [Term] id: UBERON:0028402 name: Hadjikhani et al. (1998) visuotopic area V3 +subset: human_subset +subset: mouse_subset synonym: "Hadjikhani et al. (1998) visuotopic area v3" EXACT HUMAN_PREFERRED [BIRNLEX:4057] xref: BIRNLEX:4057 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region @@ -352696,6 +370519,8 @@ is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic par [Term] id: UBERON:0028403 name: Hadjikhani et al. (1998) visuotopic area V3A +subset: human_subset +subset: mouse_subset synonym: "Hadjikhani et al. (1998) visuotopic area v3a" EXACT HUMAN_PREFERRED [BIRNLEX:4058] xref: BIRNLEX:4058 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region @@ -352703,6 +370528,8 @@ is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic par [Term] id: UBERON:0028404 name: Hadjikhani et al. (1998) visuotopic area VP +subset: human_subset +subset: mouse_subset synonym: "Hadjikhani et al. (1998) visuotopic area vp" EXACT HUMAN_PREFERRED [BIRNLEX:4059] xref: BIRNLEX:4059 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region @@ -352710,6 +370537,8 @@ is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic par [Term] id: UBERON:0028405 name: Hadjikhani et al. (1998) visuotopic area V4v +subset: human_subset +subset: mouse_subset synonym: "Hadjikhani et al. (1998) visuotopic area v4v" EXACT HUMAN_PREFERRED [BIRNLEX:4060] xref: BIRNLEX:4060 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region @@ -352717,6 +370546,8 @@ is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic par [Term] id: UBERON:0028406 name: Hadjikhani et al. (1998) visuotopic area V8 +subset: human_subset +subset: mouse_subset synonym: "Hadjikhani et al. (1998) visuotopic area v8" EXACT HUMAN_PREFERRED [BIRNLEX:4061] xref: BIRNLEX:4061 is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region @@ -352724,6 +370555,8 @@ is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic par [Term] id: UBERON:0028412 name: Ongur, Price, and Ferry (2003) area 10p +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 10p" EXACT HUMAN_PREFERRED [BIRNLEX:4067] xref: BIRNLEX:4067 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352731,6 +370564,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028413 name: Ongur, Price, and Ferry (2003) area 10r +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 10r" EXACT HUMAN_PREFERRED [BIRNLEX:4068] xref: BIRNLEX:4068 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352738,6 +370573,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028414 name: Ongur, Price, and Ferry (2003) area 10o +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 10o" EXACT HUMAN_PREFERRED [BIRNLEX:4069] xref: BIRNLEX:4069 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352746,6 +370583,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront id: UBERON:0028415 name: Ongur, Price, and Ferry (2003) area 10m def: "Area 10m is a cortical area in the frontal lobe defined on multiple architectonic criteria." [BIRNLEX:4070] +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 10m" EXACT HUMAN_PREFERRED [BIRNLEX:4070] xref: BIRNLEX:4070 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352753,6 +370592,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028416 name: Ongur, Price, and Ferry (2003) area 11m +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 11m" EXACT HUMAN_PREFERRED [BIRNLEX:4071] xref: BIRNLEX:4071 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352760,6 +370601,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028417 name: Ongur, Price, and Ferry (2003) area 47s +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 47s" EXACT HUMAN_PREFERRED [BIRNLEX:4072] xref: BIRNLEX:4072 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352767,6 +370610,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028418 name: Ongur, Price, and Ferry (2003) area 13b +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 13b" EXACT HUMAN_PREFERRED [BIRNLEX:4073] xref: BIRNLEX:4073 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352774,6 +370619,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028419 name: Ongur, Price, and Ferry (2003) area 13a +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 13a" EXACT HUMAN_PREFERRED [BIRNLEX:4074] xref: BIRNLEX:4074 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352781,6 +370628,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028420 name: Ongur, Price, and Ferry (2003) area 14r +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 14r" EXACT HUMAN_PREFERRED [BIRNLEX:4075] xref: BIRNLEX:4075 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352788,6 +370637,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028421 name: Ongur, Price, and Ferry (2003) area 14c +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 14c" EXACT HUMAN_PREFERRED [BIRNLEX:4076] xref: BIRNLEX:4076 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352795,6 +370646,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028422 name: Ongur, Price, and Ferry (2003) area 24 +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 24" EXACT HUMAN_PREFERRED [BIRNLEX:4077] xref: BIRNLEX:4077 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352802,6 +370655,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028423 name: Ongur, Price, and Ferry (2003) area 25 +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 25" EXACT HUMAN_PREFERRED [BIRNLEX:4078] xref: BIRNLEX:4078 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352809,6 +370664,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028424 name: Ongur, Price, and Ferry (2003) area 32 +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 32" EXACT HUMAN_PREFERRED [BIRNLEX:4079] xref: BIRNLEX:4079 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352816,6 +370673,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028425 name: Ongur, Price, and Ferry (2003) area G +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area g" EXACT HUMAN_PREFERRED [BIRNLEX:4080] xref: BIRNLEX:4080 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352824,6 +370683,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront id: UBERON:0028426 name: Ongur, Price, and Ferry (2003) area PrCO alt_id: UBERON:0028438 +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area prco" EXACT HUMAN_PREFERRED [BIRNLEX:4081] xref: BIRNLEX:4081 xref: BIRNLEX:4093 @@ -352832,6 +370693,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028427 name: Ongur, Price, and Ferry (2003) area 11l +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 11l" EXACT HUMAN_PREFERRED [BIRNLEX:4082] xref: BIRNLEX:4082 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352839,6 +370702,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028428 name: Ongur, Price, and Ferry (2003) area 13m +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 13m" EXACT HUMAN_PREFERRED [BIRNLEX:4083] xref: BIRNLEX:4083 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352846,6 +370711,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028429 name: Ongur, Price, and Ferry (2003) area 13l +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 13l" EXACT HUMAN_PREFERRED [BIRNLEX:4084] xref: BIRNLEX:4084 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352853,6 +370720,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028430 name: Ongur, Price, and Ferry (2003) area 47l +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 47l" EXACT HUMAN_PREFERRED [BIRNLEX:4085] xref: BIRNLEX:4085 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352860,6 +370729,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028431 name: Ongur, Price, and Ferry (2003) area 47m +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 47m" EXACT HUMAN_PREFERRED [BIRNLEX:4086] xref: BIRNLEX:4086 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352867,6 +370738,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028432 name: Ongur, Price, and Ferry (2003) area 47r +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 47r" EXACT HUMAN_PREFERRED [BIRNLEX:4087] xref: BIRNLEX:4087 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352874,6 +370747,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028433 name: Ongur, Price, and Ferry (2003) area Iam +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area iam" EXACT HUMAN_PREFERRED [BIRNLEX:4088] xref: BIRNLEX:4088 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352882,6 +370757,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront id: UBERON:0028434 name: Ongur, Price, and Ferry (2003) area Ial def: "Insula agranular lateral area." [BIRNLEX:4089] +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area ial" EXACT HUMAN_PREFERRED [BIRNLEX:4089] xref: BIRNLEX:4089 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352889,6 +370766,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028435 name: Ongur, Price, and Ferry (2003) area Iai +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area iai" EXACT HUMAN_PREFERRED [BIRNLEX:4090] xref: BIRNLEX:4090 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352896,6 +370775,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028436 name: Ongur, Price, and Ferry (2003) area 9 +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 9" EXACT HUMAN_PREFERRED [BIRNLEX:4091] xref: BIRNLEX:4091 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352903,6 +370784,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028437 name: Ongur, Price, and Ferry (2003) area 10l +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area 10l" EXACT HUMAN_PREFERRED [BIRNLEX:4092] xref: BIRNLEX:4092 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352910,6 +370793,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028439 name: Ongur, Price, and Ferry (2003) area Iapm +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area iapm" EXACT HUMAN_PREFERRED [BIRNLEX:4094] xref: BIRNLEX:4094 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352917,6 +370802,8 @@ is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefront [Term] id: UBERON:0028440 name: Ongur, Price, and Ferry (2003) area AON +subset: human_subset +subset: mouse_subset synonym: "ongur, price, and ferry (2003) area aon" EXACT HUMAN_PREFERRED [BIRNLEX:4095] xref: BIRNLEX:4095 is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region @@ -352946,6 +370833,8 @@ consider: BIRNLEX:854 id: UBERON:0028622 name: banks of superior temporal sulcus def: "Component of the temporal lobe, lateral aspect. The rostral boundary is the superior temporal gyrus and the caudal boundary the middle temporal gyrus. Within the FreeSurfer definition, this reflects primarily the posterior aspect of the superior temporal sulcus (Christine Fennema-Notestine)." [BIRNLEX:862] +subset: human_subset +subset: mouse_subset synonym: "banks of superior temporal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:862] xref: BIRNLEX:862 is_a: UBERON:0000464 ! anatomical space @@ -352955,6 +370844,8 @@ relationship: part_of UBERON:0002734 ! superior temporal sulcus id: UBERON:0028715 name: caudal anterior cingulate cortex def: "Component of the cingulate cortex. The rostral boundary was the first appearance of the genu of the corpus callosum whereas the caudal boundary was established as the first appearance of the mammillary bodies. The medial boundary was the medial aspect of the cortex. The supero-lateral boundary was the superior frontal gyrus whereas the infero-lateral boundary was the corpus callosum (Christine Fennema-Notestine)." [BIRNLEX:967] +subset: human_subset +subset: mouse_subset synonym: "caudal anterior cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:967] xref: BIRNLEX:967 is_a: UBERON:0002616 ! regional part of brain @@ -352977,6 +370868,8 @@ consider: BIRNLEX:997 [Term] id: UBERON:0028918 name: paravermic lobule II +subset: human_subset +subset: mouse_subset synonym: "paravermic lobule ii" EXACT HUMAN_PREFERRED [NLXANAT:20081215] xref: HBA:4717 xref: NLXANAT:20081215 @@ -352985,6 +370878,8 @@ is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028919 name: paravermic lobule III +subset: human_subset +subset: mouse_subset synonym: "paravermic lobule iii" EXACT HUMAN_PREFERRED [NLXANAT:20081216] xref: HBA:4718 xref: NLXANAT:20081216 @@ -352993,6 +370888,8 @@ is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028920 name: paravermic lobule IV +subset: human_subset +subset: mouse_subset synonym: "paravermic lobule iv" EXACT HUMAN_PREFERRED [NLXANAT:20081217] xref: HBA:4719 xref: NLXANAT:20081217 @@ -353001,6 +370898,8 @@ is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028921 name: paravermic lobule IX +subset: human_subset +subset: mouse_subset synonym: "paravermic lobule ix" EXACT HUMAN_PREFERRED [NLXANAT:20081218] synonym: "ventralis" RELATED [NLXANAT:20081218] xref: HBA:4728 @@ -353010,6 +370909,8 @@ is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028922 name: paravermic lobule V +subset: human_subset +subset: mouse_subset synonym: "paravermic lobule v" EXACT HUMAN_PREFERRED [NLXANAT:20081219] xref: HBA:4720 xref: NLXANAT:20081219 @@ -353018,6 +370919,8 @@ is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028923 name: paravermic lobule VI +subset: human_subset +subset: mouse_subset synonym: "paravermic lobule vi" EXACT HUMAN_PREFERRED [NLXANAT:20081220] xref: HBA:4722 xref: NLXANAT:20081220 @@ -353026,6 +370929,8 @@ is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028924 name: paravermic lobule VII +subset: human_subset +subset: mouse_subset synonym: "paravermic lobule vii" EXACT HUMAN_PREFERRED [NLXANAT:20081221] xref: NLXANAT:20081221 is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area @@ -353033,6 +370938,8 @@ is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area [Term] id: UBERON:0028925 name: paravermic lobule VIII +subset: human_subset +subset: mouse_subset synonym: "paravermic lobule viii" EXACT HUMAN_PREFERRED [NLXANAT:20081222] xref: NLXANAT:20081222 is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area @@ -353041,6 +370948,8 @@ is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area id: UBERON:0029001 name: matrix compartment of caudate nucleus def: "Matrix compartment located in the caudate nucleus." [NLXANAT:20090504] +subset: human_subset +subset: mouse_subset synonym: "matrix compartment of caudate nucleus" EXACT [NLXANAT:20090504] xref: NLXANAT:20090504 is_a: UBERON:0027368 ! matrix compartment @@ -353051,6 +370960,8 @@ relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0029002 name: matrix compartment of putamen +subset: human_subset +subset: mouse_subset synonym: "matrix compartment of putamen" EXACT [NLXANAT:20090505] xref: NLXANAT:20090505 is_a: UBERON:0027368 ! matrix compartment @@ -353061,6 +370972,8 @@ relationship: part_of UBERON:0001874 ! putamen [Term] id: UBERON:0029004 name: striosomal part of caudate nucleus +subset: human_subset +subset: mouse_subset synonym: "striosomal part of caudate nucleus" EXACT [NLXANAT:20090507] xref: NLXANAT:20090507 is_a: UBERON:0027371 ! striosome @@ -353071,6 +370984,8 @@ relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0029005 name: striosomal part of putamen +subset: human_subset +subset: mouse_subset synonym: "striosomal part of putamen" EXACT [NLXANAT:20090508] xref: NLXANAT:20090508 is_a: UBERON:0027371 ! striosome @@ -353081,6 +370996,8 @@ relationship: part_of UBERON:0001874 ! putamen [Term] id: UBERON:0029009 name: granular cell layer of dorsal cochlear nucleus +subset: human_subset +subset: mouse_subset synonym: "granular cell layer of dorsal cochlear nucleus" EXACT [NLXANAT:20090512] xref: NLXANAT:20090512 is_a: UBERON:0011215 ! central nervous system cell part cluster @@ -353119,6 +371036,8 @@ consider: BIRNLEX:1403 id: UBERON:0029503 name: sacral spinal cord gray matter subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "sacral spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:1491] xref: BIRNLEX:1491 is_a: UBERON:0002315 ! gray matter of spinal cord @@ -353131,6 +371050,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0029538 name: sacral spinal cord lateral horn subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "sacral spinal cord intermediate horn" RELATED [BIRNLEX:1527] synonym: "sacral spinal cord lateral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1527] xref: BIRNLEX:1527 @@ -353160,6 +371081,8 @@ consider: BIRNLEX:1592 id: UBERON:0029626 name: cervical spinal cord gray commissure subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cervical spinal cord gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:1614] xref: BIRNLEX:1614 is_a: UBERON:0014613 ! cervical spinal cord gray matter @@ -353181,6 +371104,8 @@ consider: BIRNLEX:1617 id: UBERON:0029636 name: lumbar spinal cord gray matter subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lumbar spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:1624] xref: BIRNLEX:1624 is_a: UBERON:0002315 ! gray matter of spinal cord @@ -353242,6 +371167,8 @@ consider: BIRNLEX:841 id: UBERON:0030276 name: lumbar spinal cord ventral horn subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lumbar spinal cord anterior horn" RELATED [BIRNLEX:891] synonym: "lumbar spinal cord ventral horn" EXACT HUMAN_PREFERRED [BIRNLEX:891] xref: BIRNLEX:891 @@ -353264,6 +371191,8 @@ consider: BIRNLEX:948 [Term] id: UBERON:0030649 name: cytoarchitecture of entorhinal cortex +subset: human_subset +subset: mouse_subset synonym: "cytoarchitecture of entorhinal cortex" EXACT HUMAN_PREFERRED [NLXANAT:20090703] xref: NLXANAT:20090703 is_a: UBERON:0002616 ! regional part of brain @@ -353273,6 +371202,8 @@ relationship: part_of UBERON:0002728 ! entorhinal cortex id: UBERON:0031111 name: sacral spinal cord gray commissure subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "sacral spinal cord gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:1459] xref: BIRNLEX:1459 is_a: UBERON:0014631 ! dorsal gray commissure of spinal cord @@ -353302,6 +371233,8 @@ consider: BIRNLEX:1664 id: UBERON:0031906 name: lumbar spinal cord lateral horn subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lumbar spinal cord intermediate horn" RELATED [BIRNLEX:877] synonym: "lumbar spinal cord lateral horn" EXACT HUMAN_PREFERRED [BIRNLEX:877] xref: BIRNLEX:877 @@ -353324,6 +371257,8 @@ consider: BIRNLEX:924 id: UBERON:0032748 name: sacral spinal cord ventral horn subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "sacral spinal cord anterior horn" RELATED [BIRNLEX:1457] synonym: "sacral spinal cord ventral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1457] xref: BIRNLEX:1457 @@ -353338,6 +371273,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0033483 name: lumbar spinal cord gray commissure subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lumbar spinal cord gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:802] xref: BIRNLEX:802 is_a: UBERON:0014631 ! dorsal gray commissure of spinal cord @@ -353352,6 +371289,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0033939 name: sacral spinal cord dorsal horn subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "sacral spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1453] synonym: "sacral spinal cord posterior horn" RELATED [BIRNLEX:1453] xref: BIRNLEX:1453 @@ -353373,6 +371312,8 @@ consider: BIRNLEX:791 id: UBERON:0034670 name: palatal taste bud def: "A taste bud that is located on the soft palate, in the roof of the mouth." [DOI:10.1523/JNEUROSCI.5142-05.2006, http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "taste bud of palate" EXACT [] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element @@ -353387,6 +371328,8 @@ property_value: taxon_notes "In the mouse, Fungiform and palatal taste buds are id: UBERON:0034671 name: arcuate sulcus def: "Composite sulcus of the frontal lobe of the macaque. Located on the dorsolateral surface, it consists of the superior ramus of the arcuate sulcus (macaque), the inferior ramus of the arcuate sulcus and the spur of the arcuate sulcus (macaque) (neuronames:2379)." [NLX:153910] +subset: human_subset +subset: mouse_subset synonym: "arcuate sulcus" RELATED [NeuroNames:2379] synonym: "inferior precentral sulcus (Walker)" RELATED [NeuroNames:2379] synonym: "sulcus arcuata" RELATED OMO:0003011 [NeuroNames:2379] @@ -353401,6 +371344,8 @@ relationship: present_in_taxon NCBITaxon:9539 ! Macaca [Term] id: UBERON:0034672 name: lateral eminence of fourth ventricle +subset: human_subset +subset: mouse_subset synonym: "area vestibularis" RELATED OMO:0003011 [NeuroNames:623] synonym: "lateral eminence of fourth ventricle" EXACT [FMA:78478] synonym: "vestibular area" BROAD [FMA:78478] @@ -353415,6 +371360,8 @@ id: UBERON:0034673 name: amygdalohippocampal area def: "A cytoarchitecturally defined portion of the periamygdalar area and the cortical amygdalar nucleus at the caudal extreme of the amygdala." [Wikipedia:Amygdalohippocampal_area] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "AHA" RELATED OMO:0003000 [DHBA:10377] synonym: "amygdalo-hippocampal area" RELATED [NeuroNames:2028] synonym: "amygdalohippocampal area" RELATED [NeuroNames:2028] @@ -353444,6 +371391,8 @@ property_value: taxon_notes "All authors regard it as occupying the caudal third [Term] id: UBERON:0034674 name: sulcus of limbic lobe +subset: human_subset +subset: mouse_subset synonym: "intralimbic sulcus" RELATED [NeuroNames:1314] synonym: "LLs" RELATED OMO:0003000 [HBA:9393] xref: HBA:9393 @@ -353454,6 +371403,8 @@ relationship: part_of UBERON:0002600 ! limbic lobe [Term] id: UBERON:0034676 name: forceps major of corpus callosum +subset: human_subset +subset: mouse_subset synonym: "ccs-ma" RELATED OMO:0003000 [DHBA:12025] synonym: "corpus callosum, forceps major" RELATED OMO:0003011 [NeuroNames:197] synonym: "corpus callosum, posterior forceps (Arnold)" RELATED [NeuroNames:197] @@ -353482,6 +371433,8 @@ relationship: part_of UBERON:0015708 {source="DHBA"} ! splenium of the corpus ca [Term] id: UBERON:0034678 name: forceps minor of corpus callosum +subset: human_subset +subset: mouse_subset synonym: "anterior forceps" EXACT [FMA:61944] synonym: "anterior forceps" RELATED [NeuroNames:192] synonym: "anterior forceps of corpus callosum" EXACT [FMA:61944] @@ -353511,6 +371464,8 @@ relationship: part_of UBERON:0015599 {source="DHBA"} ! genu of corpus callosum id: UBERON:0034680 name: laryngeal prominence def: "A zone of thyroid cartilage formed by fusion of the two plate-like laminae of the cartilages." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Thyroid_cartilage] +subset: human_subset +subset: mouse_subset synonym: "Adam's apple" EXACT [FMA:55304] synonym: "Adams apple" EXACT [] xref: BTO:0003656 @@ -353524,6 +371479,8 @@ relationship: part_of UBERON:0001738 ! thyroid cartilage id: UBERON:0034681 name: vocal organ def: "Any organ that is the primary organ of vocalization behavior. Examples: The laryngeal vocal cord (humans), the syrinx (birds)." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ intersection_of: capable_of_part_of GO:0071625 ! vocalization behavior @@ -353532,6 +371489,8 @@ relationship: capable_of_part_of GO:0071625 ! vocalization behavior [Term] id: UBERON:0034688 name: spermatic fascia +subset: human_subset +subset: mouse_subset xref: SCTID:279652001 is_a: UBERON:0008982 ! fascia @@ -353539,6 +371498,8 @@ is_a: UBERON:0008982 ! fascia id: UBERON:0034690 name: external spermatic fascia def: "A thin membrane, prolonged downward around the surface of the spermatic cord and testis. It is separated from the dartos tunic by loose areolar tissue. It is derived from the aponeurosis of the abdominal external oblique muscle." [Wikipedia:External_spermatic_fascia] +subset: human_subset +subset: mouse_subset synonym: "intercolumnar fascia" RELATED [Wikipedia:External_spermatic_fascia] synonym: "intercrural fascia" RELATED [Wikipedia:External_spermatic_fascia] synonym: "Webster's fascia" RELATED [Wikipedia:External_spermatic_fascia] @@ -353550,6 +371511,8 @@ is_a: UBERON:0034688 ! spermatic fascia [Term] id: UBERON:0034691 name: internal spermatic fascia +subset: human_subset +subset: mouse_subset synonym: "infundibuliform fascia" RELATED [Wikipedia:Internal_spermatic_fascia] xref: FMA:77299 xref: SCTID:279586003 @@ -353564,6 +371527,8 @@ id: UBERON:0034693 name: cremasteric artery def: "The cremasteric artery (external spermatic artery) is a branch of the Inferior epigastric artery which accompanies the spermatic cord, and supplies the Cremaster and other coverings of the cord, anastomosing with the testicular artery (internal spermatic artery in older texts). (In the female, the cremesteric artery is very small and accompanies the round ligament.)." [Wikipedia:Cremasteric_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cremasteric part of inferior epigastric artery" EXACT [FMA:70192] synonym: "external spermatic artery" RELATED [Wikipedia:Cremasteric_artery] xref: FMA:70192 @@ -353578,6 +371543,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0034694 name: gubernacular bulb, intra-abdominal part def: "The portion of the gubernacular bulb that is located within the abdomen." [http://orcid.org/0000-0002-6601-2165, ISBN:0123971756] +subset: human_subset +subset: mouse_subset synonym: "gubernacular cone" RELATED [ISBN:0123971756] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure @@ -353588,6 +371555,8 @@ relationship: part_of UBERON:0012326 ! gubernacular bulb id: UBERON:0034695 name: gubernacular bulb, extra-abdominal part def: "The portion of the gubernacular bulb that is located external to the abdomen." [http://orcid.org/0000-0002-6601-2165, ISBN:0123971756] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure @@ -353596,6 +371565,8 @@ relationship: part_of UBERON:0012326 ! gubernacular bulb [Term] id: UBERON:0034696 name: fold of peritoneum +subset: human_subset +subset: mouse_subset synonym: "peritoneal fold" EXACT [FMA:20610] synonym: "peritoneal outpouching" NARROW [] synonym: "peritoneal pouch" RELATED [] @@ -353607,6 +371578,8 @@ relationship: part_of UBERON:0002358 ! peritoneum [Term] id: UBERON:0034697 name: inflow tract +subset: human_subset +subset: mouse_subset synonym: "cardiac inflow tract" EXACT [] synonym: "heart inflow tract" EXACT [] synonym: "venous pole" RELATED [PMID:20735616] @@ -353621,6 +371594,8 @@ relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0034698 name: inflow tract of ventricle +subset: human_subset +subset: mouse_subset synonym: "ventricular inflow tract" EXACT [FMA:13224] xref: FMA:13224 is_a: UBERON:0034697 ! inflow tract @@ -353628,6 +371603,8 @@ is_a: UBERON:0034697 ! inflow tract [Term] id: UBERON:0034699 name: inflow tract of atrium +subset: human_subset +subset: mouse_subset synonym: "inflow tract of atrium" EXACT [FMA:14140] xref: FMA:14140 is_a: UBERON:0034697 ! inflow tract @@ -353635,6 +371612,8 @@ is_a: UBERON:0034697 ! inflow tract [Term] id: UBERON:0034703 name: inflow tract of right ventricle +subset: human_subset +subset: mouse_subset synonym: "inflow part of right ventricle" EXACT [FMA:9552] synonym: "main part of right ventricle" EXACT [FMA:9552] synonym: "right ventricle proper" EXACT [FMA:9552] @@ -353649,6 +371628,8 @@ relationship: part_of UBERON:0002080 ! heart right ventricle [Term] id: UBERON:0034704 name: inflow tract of left ventricle +subset: human_subset +subset: mouse_subset synonym: "inflow part of left ventricle" EXACT [FMA:9564] synonym: "left ventricle proper" EXACT [FMA:9564] xref: FMA:9564 @@ -353662,6 +371643,8 @@ relationship: part_of UBERON:0002084 ! heart left ventricle id: UBERON:0034705 name: developing neuroepithelium def: "An embryonic or larval epithelium that is committed to form part of the nervous system." [AEO:0001008, AEO:JB] +subset: human_subset +subset: mouse_subset synonym: "embryonic neuroepithelium" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "neurepithelium" BROAD [BTO:0000314] synonym: "neuroepithelium" EXACT [AEO:0001008] @@ -353676,6 +371659,8 @@ relationship: part_of UBERON:0001016 ! nervous system id: UBERON:0034706 name: proliferating neuroepithelium def: "An epithelium that is undergoing proliferation to provide large numbers of neuronal cells." [AEO:0001009] +subset: human_subset +subset: mouse_subset xref: AEO:0001009 is_a: UBERON:0034705 {source="AEO"} ! developing neuroepithelium @@ -353683,6 +371668,8 @@ is_a: UBERON:0034705 {source="AEO"} ! developing neuroepithelium id: UBERON:0034707 name: differentiating neuroepithelium def: "A neuroepithelium some of whose cells are undergoing terminal differentiation to become neuronal cells." [AEO:0001010] +subset: human_subset +subset: mouse_subset xref: AEO:0001010 is_a: UBERON:0034705 {source="AEO"} ! developing neuroepithelium relationship: has_part CL:0000031 ! neuroblast (sensu Vertebrata) @@ -353690,6 +371677,8 @@ relationship: has_part CL:0000031 ! neuroblast (sensu Vertebrata) [Term] id: UBERON:0034708 name: cerebellum marginal layer +subset: human_subset +subset: mouse_subset synonym: "marginal zone of cerebellum" EXACT [DHBA:12695] synonym: "MZCB" RELATED OMO:0003000 [DHBA:12695] xref: DHBA:12695 @@ -353704,6 +371693,8 @@ property_value: development_notes "In the cerebellum, some neuronal precursors e [Term] id: UBERON:0034709 name: hindbrain marginal layer +subset: human_subset +subset: mouse_subset synonym: "marginal zone of hindbrain" EXACT [DHBA:12694] synonym: "MZH" RELATED OMO:0003000 [DHBA:12694] xref: DHBA:12694 @@ -353717,6 +371708,8 @@ relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0034710 name: spinal cord ventricular layer +subset: human_subset +subset: mouse_subset synonym: "spinal cord lateral wall ventricular layer" EXACT [EHDAA2:0001267] xref: EHDAA2:0001267 xref: EMAPA:17585 @@ -353730,6 +371723,8 @@ relationship: part_of UBERON:0006241 ! future spinal cord id: UBERON:0034711 name: cortical preplate def: "The layer of the developing cerebral cortex that is formed from the first cohort of neurons to migrate out of the cortical ventricular zone; split by the second wave into marginal zone and subplate." [PMID:12626695] +subset: human_subset +subset: mouse_subset xref: EMAPA:35261 is_a: UBERON:0014950 ! layer of developing cerebral cortex @@ -353737,6 +371732,8 @@ is_a: UBERON:0014950 ! layer of developing cerebral cortex id: UBERON:0034712 name: yellow fibrocartilage def: "Fibrocartilage containing bundles of yellow elastic fibers but with little or no white fibrous tissue." [http://www.ufrgs.br/imunovet/molecular_immunology/muscles.html] +subset: human_subset +subset: mouse_subset xref: SCTID:1456008 is_a: UBERON:0001995 {source="cjm"} ! fibrocartilage @@ -353745,6 +371742,8 @@ id: UBERON:0034713 name: cranial neuron projection bundle def: "Any of the cranial nerves, or their central nervous system analogs (the optic tract, the epiphyseal tract). These analogs are not true nerves, and are instead evaginated sensory afferents emanating from the brain." [http://orcid.org/0000-0002-6601-2165, ISBN:0471888893] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cranial nerve fiber bundle" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "cranial nerve fiber tract" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "cranial nerve or tract" RELATED [http://orcid.org/0000-0002-6601-2165] @@ -353803,6 +371802,8 @@ relationship: part_of UBERON:0034714 ! epiphyseal tract id: UBERON:0034717 name: integumental taste bud def: "A taste bud that is located external to the digestive tube, on the head or body, as found in species such as goldfish." [http://orcid.org/0000-0002-6601-2165, PMID:11921337] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001727 ! taste bud intersection_of: UBERON:0001727 ! taste bud intersection_of: part_of UBERON:0002416 ! integumental system @@ -353812,6 +371813,8 @@ relationship: part_of UBERON:0002416 ! integumental system id: UBERON:0034718 name: barbel taste bud def: "A taste bud that is located on a barbel." [http://orcid.org/0000-0002-6601-2165, PMID:11921337] +subset: human_subset +subset: mouse_subset is_a: UBERON:0034717 ! integumental taste bud intersection_of: UBERON:0001727 ! taste bud intersection_of: part_of UBERON:2000622 ! barbel @@ -353821,6 +371824,8 @@ relationship: part_of UBERON:2000622 ! barbel id: UBERON:0034719 name: lip taste bud def: "A taste bud that is located on a lip." [http://orcid.org/0000-0002-6601-2165, PMID:11921337] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001727 ! taste bud is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001727 ! taste bud @@ -353832,6 +371837,8 @@ relationship: present_in_taxon NCBITaxon:32443 ! Teleostei id: UBERON:0034720 name: head taste bud def: "A taste bud that is located on the skin of the head." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034717 ! integumental taste bud intersection_of: UBERON:0001727 ! taste bud @@ -353842,6 +371849,8 @@ relationship: part_of UBERON:0001084 ! skin of head id: UBERON:0034721 name: pharyngeal taste bud def: "A taste bud that is located in the pharynx." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001727 ! taste bud is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001727 ! taste bud @@ -353854,6 +371863,8 @@ relationship: present_in_taxon NCBITaxon:7778 ! Elasmobranchii id: UBERON:0034722 name: mouth roof taste bud def: "A taste bud that is located on the roof of the mouth." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001727 ! taste bud intersection_of: UBERON:0001727 ! taste bud intersection_of: part_of UBERON:0007375 ! roof of mouth @@ -353874,6 +371885,8 @@ relationship: present_in_taxon NCBITaxon:32443 ! Teleostei id: UBERON:0034724 name: esophageal taste bud def: "A taste bud that is located in the esophagus." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001727 ! taste bud is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0013765 ! digestive system element @@ -353886,6 +371899,8 @@ relationship: present_in_taxon NCBITaxon:32443 ! Teleostei id: UBERON:0034725 name: pterygopalatine nerve def: "The pharyngeal nerve (pterygopalatine nerve) is a small branch arising from the posterior part of the pterygopalatine ganglion. It passes through the pharyngeal canal with the pharyngeal branch of the maxillary artery, and is distributed to the mucous membrane of the nasal part of the pharynx, behind the auditory tube." [Wikipedia:Pharyngeal_nerve] +subset: human_subset +subset: mouse_subset synonym: "ganglionic branch of maxillary nerve to pterygopalatine ganglion" EXACT [FMA:52731] synonym: "pharyngeal nerve" RELATED [Wikipedia:Pharyngeal_nerve] synonym: "pterygopalatine nerve" EXACT [FMA:52731] @@ -353902,6 +371917,8 @@ relationship: part_of UBERON:0000377 ! maxillary nerve id: UBERON:0034726 name: trunk taste bud def: "A taste bud that is located on the skin of the trunk." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005177 ! trunk region element is_a: UBERON:0034717 ! integumental taste bud @@ -353914,6 +371931,8 @@ id: UBERON:0034727 name: vestibular bulb artery def: "The artery of bulb of vestibule is a branch of the internal pudendal artery." [Wikipedia:Artery_of_bulb_of_vestibule] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria bulbi vestibuli" EXACT OMO:0003011 [FMA:TA] synonym: "artery of bulb of vestibule" EXACT [FMA:20900] xref: FMA:20900 @@ -353932,6 +371951,8 @@ id: UBERON:0034728 name: autonomic nerve def: "The autonomic nerve is a small nerve which carries postganglionic sympathetic and parasympathetic neurons from the zygomaticotemporal nerve; a branch of the maxillary nerve, to the lacrimal nerve; a branch of the ophthalmic nerve. These neurons derive from the superior cervical ganglion and the pterygopalatine ganglion respectively. They will travel to the lacrimal gland via the lacrimal nerve. Parasympathetic will induce lacrimation and vice versa." [Wikipedia:Autonomic_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "nervus visceralis" EXACT [FMA:5866] synonym: "visceral nerve" EXACT [FMA:5866] xref: EMAPA:37957 {source="MA:th"} @@ -353950,6 +371971,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0034729 name: sympathetic nerve subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:37958 {source="MA:th"} xref: SCTID:181098007 is_a: UBERON:0001021 ! nerve @@ -353963,6 +371986,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0034730 name: olfactory tract linking bulb to ipsilateral dorsal telencephalon +subset: human_subset +subset: mouse_subset synonym: "lateral olfactory tract" RELATED [ZFA:0000229] synonym: "tractus olfactorius lateralis" RELATED [ZFA:0000229] xref: TAO:0000229 @@ -353977,6 +372002,8 @@ property_value: external_definition "Telencephalic white matter which extends be id: UBERON:0034734 name: medial olfactory stria def: "The medial olfactory stria turns medialward behind the parolfactory area and ends in the subcallosal gyrus; in some cases a small intermediate stria is seen running backward to the anterior perforated substance." [Wikipedia:Medial_olfactory_stria] +subset: human_subset +subset: mouse_subset synonym: "medial olfactory tract" RELATED [NeuroNames:2278] synonym: "stria olfactoria medialis" EXACT OMO:0003011 [FMA:77627, FMA:TA] synonym: "tractus olfactorius medialis" RELATED OMO:0003011 [NeuroNames:2278] @@ -353994,6 +372021,8 @@ disjoint_from: UBERON:2000238 ! olfactory tract linking bulb to ipsilateral vent id: UBERON:0034735 name: oviduct albumen gland def: "A gland in the glandular region of the oviduct that secretes albumen over the ovum. In birds there are two regions of the oviduct, the first secretes a thin chalaziferous albumen layer, the second secretes a thicker albumen layer." [ISBN:978-0226870137] +subset: human_subset +subset: mouse_subset xref: BTO:0000054 is_a: UBERON:0005398 ! female reproductive gland relationship: part_of UBERON:0000993 ! oviduct @@ -354002,6 +372031,8 @@ relationship: part_of UBERON:0000993 ! oviduct id: UBERON:0034736 name: coracoclavicular ligament def: "Any ligament that connects the coracoid process with the clavicle." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "accessory ligament of acromioclavicular joint" EXACT [FMA:26029] xref: FMA:26029 xref: SCTID:361899005 @@ -354018,6 +372049,8 @@ relationship: part_of UBERON:0003692 {source="FMA"} ! acromioclavicular joint id: UBERON:0034743 name: inferior longitudinal fasciculus def: "The inferior longitudinal fasciculus connects the temporal lobe and occipital lobe, running along the lateral walls of the inferior and posterior cornua of the lateral ventricle. The existence of this fasciculus independent from the occipitotemporal fasciculus has been questioned for the human being, such that it has been proposed that the term inferior longitudinal fasciculus be replaced by the term 'occipitotemporal projection'." [Wikipedia:Inferior_longitudinal_fasciculus] +subset: human_subset +subset: mouse_subset synonym: "external sagittal stratum" RELATED [NeuroNames:1443] synonym: "fasciculus fronto-occipitalis inferior" RELATED OMO:0003011 [NeuroNames:1443] synonym: "fasciculus longitudinalis inferior" RELATED OMO:0003011 [NeuroNames:1443] @@ -354036,6 +372069,8 @@ relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fib [Term] id: UBERON:0034745 name: radiation of thalamus +subset: human_subset +subset: mouse_subset synonym: "thalamic radiation" RELATED [FMA:76975] synonym: "thalamus radiation" EXACT [FMA:76975] xref: FMA:76975 @@ -354049,6 +372084,8 @@ property_value: editor_note "todo - add all" xsd:string [Term] id: UBERON:0034746 name: anterior thalamic radiation +subset: human_subset +subset: mouse_subset synonym: "anterior radiation of thalamus" EXACT [FMA:76976] synonym: "anterior thalamic radiation" EXACT [FMA:76976] synonym: "anterior thalamic radiation" RELATED [NeuroNames:1726] @@ -354067,6 +372104,8 @@ relationship: part_of UBERON:0014526 {source="DHBA"} ! anterior limb of internal [Term] id: UBERON:0034747 name: posterior thalamic radiation +subset: human_subset +subset: mouse_subset synonym: "posterior thalamic radiation" EXACT [FMA:76982] synonym: "posterior thalamic radiation" RELATED [NeuroNames:2083] synonym: "posterior thalamic radiations" RELATED [NeuroNames:2083] @@ -354084,6 +372123,8 @@ relationship: part_of UBERON:0034749 ! retrolenticular part of internal capsule [Term] id: UBERON:0034749 name: retrolenticular part of internal capsule +subset: human_subset +subset: mouse_subset synonym: "pars retrolenticularis capsulae internae" RELATED OMO:0003011 [NeuroNames:203] synonym: "pars retrolentiformis" EXACT [FMA:TA] synonym: "pars retrolentiformis (capsulae internae)" RELATED OMO:0003011 [NeuroNames:203] @@ -354104,6 +372145,8 @@ relationship: part_of UBERON:0014527 {source="DHBA", source="FMA"} ! posterior l id: UBERON:0034750 name: visual association cortex def: "Part of cortex considered to function in higher level visual functions." [NLX:143553] +subset: human_subset +subset: mouse_subset synonym: "visual association area" RELATED [Wikipedia:Visual_cortex] synonym: "visual association cortex" RELATED [Wikipedia:Visual_cortex] xref: NLX:143553 @@ -354118,6 +372161,8 @@ relationship: part_of UBERON:0000411 ! visual cortex id: UBERON:0034751 name: primary auditory cortex def: "The part of the auditory cortex that is located on the superior temporal gyrus in the temporal lobe and receives point-to-point input from the ventral division of the medial geniculate complex." [http://www.ncbi.nlm.nih.gov/books/NBK10900/] +subset: human_subset +subset: mouse_subset synonym: "A1C" RELATED OMO:0003000 [DHBA:10236] synonym: "auditory complex area A1" RELATED [NCBIBook:NBK10900] synonym: "auditory core region" RELATED [NeuroNames:1354] @@ -354135,6 +372180,8 @@ relationship: part_of UBERON:0001393 {source="cjm"} ! auditory cortex id: UBERON:0034752 name: secondary auditory cortex def: "The part of the auditory cortex that receive more diffuse input from the belt areas of the medial geniculate complex." [http://www.ncbi.nlm.nih.gov/books/NBK10900/] +subset: human_subset +subset: mouse_subset synonym: "A42" RELATED OMO:0003000 [DHBA:10239] synonym: "belt area of auditory complex" RELATED [NCBIBook:NBK10900] synonym: "belt auditory area" EXACT [FMA:272944] @@ -354153,6 +372200,8 @@ relationship: part_of UBERON:0001393 {source="cjm"} ! auditory cortex [Term] id: UBERON:0034753 name: inferior occipitofrontal fasciculus +subset: human_subset +subset: mouse_subset synonym: "fasciculus occipito-frontalis inferior" RELATED OMO:0003011 [NeuroNames:1442] synonym: "fasciculus occipitofrontalis inferior" RELATED OMO:0003011 [NeuroNames:1442] synonym: "inferior fronto-occipital fasciculus" RELATED [NeuroNames:1442] @@ -354168,6 +372217,8 @@ is_a: UBERON:0034754 ! occipitofrontal fasciculus id: UBERON:0034754 name: occipitofrontal fasciculus def: "The occipitofrontal fasciculus passes backward from the frontal lobe, along the lateral border of the caudate nucleus, and on the medial aspect of the corona radiata; its fibers radiate in a fan-like manner and pass into the occipital and temporal lobes lateral to the posterior and inferior cornua." [Wikipedia:Occipitofrontal_fasciculus] +subset: human_subset +subset: mouse_subset synonym: "inferior occipitofrontal fasciculus" RELATED [Wikipedia:Occipitofrontal_fasciculus] synonym: "off" RELATED OMO:0003000 [DHBA:10588] xref: DHBA:10588 @@ -354181,6 +372232,8 @@ relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fib id: UBERON:0034762 name: areolar sweat gland def: "Any sweat gland that is part of an areola." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "areolar aprocine sweat gland" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "sweat gland of areola" EXACT [FMA:62149] xref: FMA:62149 @@ -354193,6 +372246,8 @@ relationship: part_of UBERON:0002032 ! areola id: UBERON:0034763 name: hindbrain commissure def: "Any commissure within the hindbrain." [http://orcid.org/0000-0002-6601-2165, ZFIN:ZDB-PUB-090417-11] +subset: human_subset +subset: mouse_subset xref: TAO:0002199 xref: ZFA:0001692 is_a: UBERON:0005970 ! brain commissure @@ -354203,6 +372258,8 @@ relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0034764 name: remnant of cardiac valve +subset: human_subset +subset: mouse_subset synonym: "vestigial cardiac valve" EXACT [FMA:14153] xref: FMA:14153 is_a: UBERON:0004120 ! mesoderm-derived structure @@ -354217,6 +372274,8 @@ relationship: transformation_of UBERON:0000946 ! cardiac valve id: UBERON:0034765 name: glabella skin def: "The zone of skin that overlaps with the glabella region." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Glabella] +subset: human_subset +subset: mouse_subset synonym: "glabella" BROAD [] xref: SCTID:244083007 is_a: UBERON:0016475 ! skin of forehead @@ -354227,6 +372286,8 @@ property_value: taxon_notes "in humans this area is normally hairless" xsd:strin id: UBERON:0034766 name: glabella region def: "A region of the forehead corresponding to the space between the eyebrows and above the nose." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Glabella] +subset: human_subset +subset: mouse_subset synonym: "glabella" NARROW [] xref: Wikipedia:Glabella is_a: UBERON:0001444 ! subdivision of head @@ -354238,6 +372299,8 @@ relationship: part_of UBERON:0008200 ! forehead id: UBERON:0034767 name: buccal vestibule def: "The buccal vestibule is the space external to teeth and gums and internal to lips and cheeks. The proportion of its walls formed by the lips varies according to species depending upon their feeding action. The horse like most herbivores has a relatively small opening. The buccal vestibule opens to the outside rostrally via a U shaped slit the oral fissure. When the mouth is closed the buccal vestibule and the mouth cavity proper connect via spaces between and behind the teeth. These allow free communication between the two sides of the vestibule. Several salivary ducts open into the dorso caudal part of the vestibule: Parotid gland - opens into the cheek on the small parotid papilla, opposite to the caudal part of upper 4 th premolar teeth. Zygomatic gland - the main duct opens in the caudal part of the upper 1 st molar tooth on a small papilla near the vestibular fornix. Submucous glands - minimal in number, confined to the lower lip and adjacent part of the cheek. Secretion occurs through about 10 openings located near the fornix of the vestibule." [MURDOCH:240] +subset: human_subset +subset: mouse_subset xref: FMA:289320 xref: MURDOCH:240 is_a: UBERON:0000464 ! anatomical space @@ -354251,6 +372314,8 @@ id: UBERON:0034768 name: morphological feature def: "A part of an organism or organ that is continuous with its surroundings and distinguished from its surroundings based on morphology." [http://orcid.org/0000-0002-6601-2165] subset: common_anatomy +subset: human_subset +subset: mouse_subset is_a: UBERON:0000061 ! anatomical structure relationship: has_quality PATO:0000052 ! shape relationship: part_of UBERON:0000468 ! multicellular organism @@ -354261,6 +372326,8 @@ relationship: present_in_taxon NCBITaxon:4751 ! Fungi [Term] id: UBERON:0034769 name: lymphomyeloid tissue +subset: human_subset +subset: mouse_subset xref: FMA:79770 xref: NCIT:C41168 is_a: UBERON:0015757 {source="FMA"} ! heterogeneous tissue @@ -354268,6 +372335,8 @@ is_a: UBERON:0015757 {source="FMA"} ! heterogeneous tissue [Term] id: UBERON:0034770 name: bulbourethral gland epithelium +subset: human_subset +subset: mouse_subset synonym: "epithelium of bulbourethral gland" EXACT [] synonym: "epithelium of bulbourethral gland of male" EXACT [EMAPA:29790] xref: EMAPA:29790 @@ -354282,6 +372351,8 @@ relationship: part_of UBERON:0002366 ! bulbo-urethral gland id: UBERON:0034771 name: ventral commissural nucleus of spinal cord def: "The term commissural nucleus of the spinal cord refers to a group of cells in the medial portion of the anterior gray column; it corresponds roughly to lamina VIII." [NeuroNames:1658] +subset: human_subset +subset: mouse_subset synonym: "commissural nucleus of spinal cord" BROAD [FMA:73900] synonym: "commissural nucleus of spinal cord" EXACT [FMA:73900] synonym: "commissural nucleus of spinal cord" RELATED [FMA:73900] @@ -354296,6 +372367,8 @@ relationship: part_of UBERON:0002257 ! ventral horn of spinal cord id: UBERON:0034772 name: margin of eyelid def: "The confluence of the mucosal surface of the conjunctiva, the edge of the orbicularis, and the cutaneous epithelium." [MGI:anna] +subset: human_subset +subset: mouse_subset synonym: "free margin of eyelid" EXACT [] xref: EMAPA:37905 {source="MA:th"} xref: FMA:59356 @@ -354309,6 +372382,8 @@ id: UBERON:0034773 name: uncus of parahippocampal gyrus def: "The anterior extremity of the Parahippocampal gyrus is recurved in the form of a hook, the uncus, which is separated from the apex of the temporal lobe by a slight fissure, the incisura temporalis. Although superficially continuous with the hippocampal gyrus, the uncus forms morphologically a part of the rhinencephalon. The term uncus was coined by Felix Vicq dbAzyr (1748b1794)." [Wikipedia:Uncus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "pyriform area (Crosby)" RELATED [NeuroNames:40] synonym: "uncus" RELATED OMO:0003011 [NeuroNames:40] synonym: "uncus hippocampi" EXACT OMO:0003011 [NeuroNames:40] @@ -354325,6 +372400,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0034774 name: uncal CA1 +subset: human_subset +subset: mouse_subset synonym: "CA1U" RELATED OMO:0003000 [DHBA:266441267] xref: DHBA:266441267 is_a: UBERON:0002616 ! regional part of brain @@ -354333,6 +372410,8 @@ relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus [Term] id: UBERON:0034775 name: uncal CA2 +subset: human_subset +subset: mouse_subset synonym: "CA2U" RELATED OMO:0003000 [DHBA:266441311] xref: DHBA:266441311 is_a: UBERON:0002616 ! regional part of brain @@ -354341,6 +372420,8 @@ relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus [Term] id: UBERON:0034776 name: uncal CA3 +subset: human_subset +subset: mouse_subset synonym: "CA3U" RELATED OMO:0003000 [DHBA:266441355] xref: DHBA:266441355 is_a: UBERON:0002616 ! regional part of brain @@ -354349,6 +372430,8 @@ relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus [Term] id: UBERON:0034777 name: rostral CA1 +subset: human_subset +subset: mouse_subset synonym: "CA1R" RELATED OMO:0003000 [DHBA:11275] xref: DHBA:11275 is_a: UBERON:0002616 ! regional part of brain @@ -354357,6 +372440,8 @@ relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus [Term] id: UBERON:0034778 name: rostral CA2 +subset: human_subset +subset: mouse_subset synonym: "CA2R" RELATED OMO:0003000 [DHBA:11285] xref: DHBA:11285 is_a: UBERON:0002616 ! regional part of brain @@ -354365,6 +372450,8 @@ relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus [Term] id: UBERON:0034779 name: rostral CA3 +subset: human_subset +subset: mouse_subset synonym: "CA3R" RELATED OMO:0003000 [DHBA:11295] xref: DHBA:11295 is_a: UBERON:0002616 ! regional part of brain @@ -354373,6 +372460,8 @@ relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus [Term] id: UBERON:0034780 name: caudal CA1 +subset: human_subset +subset: mouse_subset synonym: "CA1C" RELATED OMO:0003000 [DHBA:11280] xref: DHBA:11280 is_a: UBERON:0002616 ! regional part of brain @@ -354381,6 +372470,8 @@ relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus [Term] id: UBERON:0034781 name: caudal CA2 +subset: human_subset +subset: mouse_subset synonym: "CA2C" RELATED OMO:0003000 [DHBA:11290] xref: DHBA:11290 is_a: UBERON:0002616 ! regional part of brain @@ -354389,6 +372480,8 @@ relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus [Term] id: UBERON:0034782 name: caudal CA3 +subset: human_subset +subset: mouse_subset synonym: "CA3C" RELATED OMO:0003000 [DHBA:11301] xref: DHBA:11301 is_a: UBERON:0002616 ! regional part of brain @@ -354397,6 +372490,8 @@ relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus [Term] id: UBERON:0034798 name: stratum lacunosum-moleculare of caudal CA1 +subset: human_subset +subset: mouse_subset synonym: "CA1Cslm" RELATED OMO:0003000 [DHBA:11281] xref: DHBA:11281 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354409,6 +372504,8 @@ relationship: part_of UBERON:0034780 ! caudal CA1 [Term] id: UBERON:0034799 name: stratum radiatum of caudal CA1 +subset: human_subset +subset: mouse_subset synonym: "CA1Csr" RELATED OMO:0003000 [DHBA:11282] xref: DHBA:11282 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354421,6 +372518,8 @@ relationship: part_of UBERON:0034780 ! caudal CA1 [Term] id: UBERON:0034800 name: stratum pyramidale of caudal CA1 +subset: human_subset +subset: mouse_subset synonym: "CA1Csp" RELATED OMO:0003000 [DHBA:11283] xref: DHBA:11283 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354433,6 +372532,8 @@ relationship: part_of UBERON:0034780 ! caudal CA1 [Term] id: UBERON:0034801 name: stratum oriens of caudal CA1 +subset: human_subset +subset: mouse_subset synonym: "CA1Cso" RELATED OMO:0003000 [DHBA:11284] xref: DHBA:11284 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354445,6 +372546,8 @@ relationship: part_of UBERON:0034780 ! caudal CA1 [Term] id: UBERON:0034803 name: stratum lacunosum-moleculare of caudal CA2 +subset: human_subset +subset: mouse_subset synonym: "CA2Cslm" RELATED OMO:0003000 [DHBA:11291] xref: DHBA:11291 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354457,6 +372560,8 @@ relationship: part_of UBERON:0034781 ! caudal CA2 [Term] id: UBERON:0034804 name: stratum radiatum of caudal CA2 +subset: human_subset +subset: mouse_subset synonym: "CA2Csr" RELATED OMO:0003000 [DHBA:11292] xref: DHBA:11292 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354469,6 +372574,8 @@ relationship: part_of UBERON:0034781 ! caudal CA2 [Term] id: UBERON:0034805 name: stratum pyramidale of caudal CA2 +subset: human_subset +subset: mouse_subset synonym: "CA2Csp" RELATED OMO:0003000 [DHBA:11293] xref: DHBA:11293 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354481,6 +372588,8 @@ relationship: part_of UBERON:0034781 ! caudal CA2 [Term] id: UBERON:0034806 name: stratum oriens of caudal CA2 +subset: human_subset +subset: mouse_subset synonym: "CA2Cso" RELATED OMO:0003000 [DHBA:11294] xref: DHBA:11294 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354493,6 +372602,8 @@ relationship: part_of UBERON:0034781 ! caudal CA2 [Term] id: UBERON:0034808 name: stratum lacunosum-moleculare of caudal CA3 +subset: human_subset +subset: mouse_subset synonym: "CA3Cslm" RELATED OMO:0003000 [DHBA:11302] xref: DHBA:11302 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354505,6 +372616,8 @@ relationship: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034809 name: stratum radiatum of caudal CA3 +subset: human_subset +subset: mouse_subset synonym: "CA3Csr" RELATED OMO:0003000 [DHBA:11303] xref: DHBA:11303 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354517,6 +372630,8 @@ relationship: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034810 name: stratum lucidum of caudal CA3 +subset: human_subset +subset: mouse_subset synonym: "CA3Csl" RELATED OMO:0003000 [DHBA:11304] xref: DHBA:11304 is_a: UBERON:0014560 ! CA3 stratum lucidum @@ -354529,6 +372644,8 @@ relationship: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034811 name: stratum pyramidale of caudal CA3 +subset: human_subset +subset: mouse_subset synonym: "CA3Csp" RELATED OMO:0003000 [DHBA:11305] xref: DHBA:11305 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354541,6 +372658,8 @@ relationship: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034812 name: stratum oriens of caudal CA3 +subset: human_subset +subset: mouse_subset synonym: "CA3Cso" RELATED OMO:0003000 [DHBA:11306] xref: DHBA:11306 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354553,6 +372672,8 @@ relationship: part_of UBERON:0034782 ! caudal CA3 [Term] id: UBERON:0034828 name: stratum lacunosum-moleculare of rostral CA1 +subset: human_subset +subset: mouse_subset synonym: "CA1Rslm" RELATED OMO:0003000 [DHBA:11276] xref: DHBA:11276 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354565,6 +372686,8 @@ relationship: part_of UBERON:0034777 ! rostral CA1 [Term] id: UBERON:0034829 name: stratum radiatum of rostral CA1 +subset: human_subset +subset: mouse_subset synonym: "CA1Rsr" RELATED OMO:0003000 [DHBA:11277] xref: DHBA:11277 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354577,6 +372700,8 @@ relationship: part_of UBERON:0034777 ! rostral CA1 [Term] id: UBERON:0034830 name: stratum pyramidale of rostral CA1 +subset: human_subset +subset: mouse_subset synonym: "CA1Rsp" RELATED OMO:0003000 [DHBA:11278] xref: DHBA:11278 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354589,6 +372714,8 @@ relationship: part_of UBERON:0034777 ! rostral CA1 [Term] id: UBERON:0034831 name: stratum oriens of rostral CA1 +subset: human_subset +subset: mouse_subset synonym: "CA1Rso" RELATED OMO:0003000 [DHBA:11279] xref: DHBA:11279 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354601,6 +372728,8 @@ relationship: part_of UBERON:0034777 ! rostral CA1 [Term] id: UBERON:0034833 name: stratum lacunosum-moleculare of rostral CA2 +subset: human_subset +subset: mouse_subset synonym: "CA2Rslm" RELATED OMO:0003000 [DHBA:11286] xref: DHBA:11286 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354613,6 +372742,8 @@ relationship: part_of UBERON:0034778 ! rostral CA2 [Term] id: UBERON:0034834 name: stratum radiatum of rostral CA2 +subset: human_subset +subset: mouse_subset synonym: "CA2Rsr" RELATED OMO:0003000 [DHBA:11287] xref: DHBA:11287 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354625,6 +372756,8 @@ relationship: part_of UBERON:0034778 ! rostral CA2 [Term] id: UBERON:0034835 name: stratum pyramidale of rostral CA2 +subset: human_subset +subset: mouse_subset synonym: "CA2Rsp" RELATED OMO:0003000 [DHBA:11288] xref: DHBA:11288 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354637,6 +372770,8 @@ relationship: part_of UBERON:0034778 ! rostral CA2 [Term] id: UBERON:0034836 name: stratum oriens of rostral CA2 +subset: human_subset +subset: mouse_subset synonym: "CA2Rso" RELATED OMO:0003000 [DHBA:11289] xref: DHBA:11289 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354649,6 +372784,8 @@ relationship: part_of UBERON:0034778 ! rostral CA2 [Term] id: UBERON:0034838 name: stratum lacunosum-moleculare of rostral CA3 +subset: human_subset +subset: mouse_subset synonym: "CA3Rslm" RELATED OMO:0003000 [DHBA:11296] xref: DHBA:11296 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354661,6 +372798,8 @@ relationship: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034839 name: stratum radiatum of rostral CA3 +subset: human_subset +subset: mouse_subset synonym: "CA3Rsr" RELATED OMO:0003000 [DHBA:11297] xref: DHBA:11297 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354673,6 +372812,8 @@ relationship: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034840 name: stratum lucidum of rostral CA3 +subset: human_subset +subset: mouse_subset synonym: "CA3Rsl" RELATED OMO:0003000 [DHBA:11298] xref: DHBA:11298 is_a: UBERON:0014560 ! CA3 stratum lucidum @@ -354685,6 +372826,8 @@ relationship: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034841 name: stratum pyramidale of rostral CA3 +subset: human_subset +subset: mouse_subset synonym: "CA3Rsp" RELATED OMO:0003000 [DHBA:11299] xref: DHBA:11299 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354697,6 +372840,8 @@ relationship: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034842 name: stratum oriens of rostral CA3 +subset: human_subset +subset: mouse_subset synonym: "CA3Rso" RELATED OMO:0003000 [DHBA:11300] xref: DHBA:11300 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354709,6 +372854,8 @@ relationship: part_of UBERON:0034779 ! rostral CA3 [Term] id: UBERON:0034858 name: stratum lacunosum-moleculare of uncal CA1 +subset: human_subset +subset: mouse_subset synonym: "CA1Uslm" RELATED OMO:0003000 [DHBA:266441271] xref: DHBA:266441271 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354721,6 +372868,8 @@ relationship: part_of UBERON:0034774 ! uncal CA1 [Term] id: UBERON:0034859 name: stratum radiatum of uncal CA1 +subset: human_subset +subset: mouse_subset synonym: "CA1Usr" RELATED OMO:0003000 [DHBA:266441283] xref: DHBA:266441283 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354733,6 +372882,8 @@ relationship: part_of UBERON:0034774 ! uncal CA1 [Term] id: UBERON:0034860 name: stratum pyramidale of uncal CA1 +subset: human_subset +subset: mouse_subset synonym: "CA1Usp" RELATED OMO:0003000 [DHBA:266441287] xref: DHBA:266441287 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354745,6 +372896,8 @@ relationship: part_of UBERON:0034774 ! uncal CA1 [Term] id: UBERON:0034861 name: stratum oriens of uncal CA1 +subset: human_subset +subset: mouse_subset synonym: "CA1Uso" RELATED OMO:0003000 [DHBA:266441291] xref: DHBA:266441291 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354757,6 +372910,8 @@ relationship: part_of UBERON:0034774 ! uncal CA1 [Term] id: UBERON:0034863 name: stratum lacunosum-moleculare of uncal CA2 +subset: human_subset +subset: mouse_subset synonym: "CA2Uslm" RELATED OMO:0003000 [DHBA:266441315] xref: DHBA:266441315 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354769,6 +372924,8 @@ relationship: part_of UBERON:0034775 ! uncal CA2 [Term] id: UBERON:0034864 name: stratum radiatum of uncal CA2 +subset: human_subset +subset: mouse_subset synonym: "CA2Usr" RELATED OMO:0003000 [DHBA:266441327] xref: DHBA:266441327 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354781,6 +372938,8 @@ relationship: part_of UBERON:0034775 ! uncal CA2 [Term] id: UBERON:0034865 name: stratum pyramidale of uncal CA2 +subset: human_subset +subset: mouse_subset synonym: "CA2Usp" RELATED OMO:0003000 [DHBA:266441331] xref: DHBA:266441331 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354793,6 +372952,8 @@ relationship: part_of UBERON:0034775 ! uncal CA2 [Term] id: UBERON:0034866 name: stratum oriens of uncal CA2 +subset: human_subset +subset: mouse_subset synonym: "CA2Uso" RELATED OMO:0003000 [DHBA:266441335] xref: DHBA:266441335 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354805,6 +372966,8 @@ relationship: part_of UBERON:0034775 ! uncal CA2 [Term] id: UBERON:0034868 name: stratum lacunosum-moleculare of uncal CA3 +subset: human_subset +subset: mouse_subset synonym: "CA3Uslm" RELATED OMO:0003000 [DHBA:266441359] xref: DHBA:266441359 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354817,6 +372980,8 @@ relationship: part_of UBERON:0034776 ! uncal CA3 [Term] id: UBERON:0034869 name: stratum radiatum of uncal CA3 +subset: human_subset +subset: mouse_subset synonym: "CA3Usr" RELATED OMO:0003000 [DHBA:266441371] xref: DHBA:266441371 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354829,6 +372994,8 @@ relationship: part_of UBERON:0034776 ! uncal CA3 [Term] id: UBERON:0034870 name: stratum lucidum of uncal CA3 +subset: human_subset +subset: mouse_subset synonym: "CA3Usl" RELATED OMO:0003000 [DHBA:266441375] xref: DHBA:266441375 is_a: UBERON:0014560 ! CA3 stratum lucidum @@ -354841,6 +373008,8 @@ relationship: part_of UBERON:0034776 ! uncal CA3 [Term] id: UBERON:0034871 name: stratum pyramidale of uncal CA3 +subset: human_subset +subset: mouse_subset synonym: "CA3Usp" RELATED OMO:0003000 [DHBA:266441379] xref: DHBA:266441379 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354853,6 +373022,8 @@ relationship: part_of UBERON:0034776 ! uncal CA3 [Term] id: UBERON:0034872 name: stratum oriens of uncal CA3 +subset: human_subset +subset: mouse_subset synonym: "CA3Uso" RELATED OMO:0003000 [DHBA:266441383] xref: DHBA:266441383 is_a: UBERON:0014567 ! layer of hippocampal field @@ -354866,6 +373037,8 @@ relationship: part_of UBERON:0034776 ! uncal CA3 id: UBERON:0034873 name: bodily gas def: "Any substance in the body or expelled from the body that is in a gaseous state." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "gas in anatomical space" EXACT [] synonym: "portion of gas in anatomical space" EXACT [FMA:84580] xref: FMA:84580 @@ -354878,6 +373051,8 @@ relationship: has_quality PATO:0001547 ! quality of a gas id: UBERON:0034874 name: air in respiratory system def: "Any portion of gas located in a part of the respiratory system that is composed primarily of air." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "respiratory air" EXACT [FMA:84581] synonym: "respiratory system air" EXACT [] xref: FMA:84581 @@ -354891,6 +373066,8 @@ relationship: located_in UBERON:0001004 ! respiratory system [Term] id: UBERON:0034875 name: future pituitary gland +subset: human_subset +subset: mouse_subset synonym: "pituitary primordium" EXACT [EHDAA2:0001472] xref: EHDAA2:0001472 xref: EMAPA:32796 @@ -354900,11 +373077,14 @@ intersection_of: has_potential_to_develop_into UBERON:0000007 ! pituitary gland relationship: develops_from UBERON:0000924 {source="Wikipedia"} ! ectoderm relationship: has_potential_to_develop_into UBERON:0000007 ! pituitary gland relationship: part_of UBERON:0000033 {source="EMAPA"} ! head +relationship: part_of UBERON:8450003 ! embryonic craniocervical region [Term] id: UBERON:0034876 name: future neurohypophysis def: "The outgrowth of neuroectoderm located on the floor of the embryonic hypothalamus that gives rise to the neurohypophysis (posterior lobe) of the pituitary gland." [https://sourceforge.net/p/obo/mammalian-phenotype-requests/1930/, MP:0013339] +subset: human_subset +subset: mouse_subset synonym: "neurohypohysial region" RELATED [EHDAA2:0004434] synonym: "neurohypophyseal bud" RELATED [MP:0013339] xref: EHDAA2:0004434 @@ -354920,6 +373100,8 @@ relationship: part_of UBERON:0034875 {source="EMAPA"} ! future pituitary gland id: UBERON:0034877 name: angioblastic cord def: "The cordlike masses of splanchnic mesenchymal cells ventral to the primordial pericardial coelom that arrange themselves side by side to form the primordia of the endocardial heart tubes." [MP:0012500] +subset: human_subset +subset: mouse_subset synonym: "angiogenic cell cluster" EXACT [] xref: NCIT:C34106 xref: UMLS:C1515990 @@ -354932,6 +373114,8 @@ property_value: taxon_notes "day 18 [CS08] in human[https://embryology.med.unsw. id: UBERON:0034878 name: prechordal mesoderm def: "The area of axial mesoderm that develops into the prechordal plate." [MGI:anna] +subset: human_subset +subset: mouse_subset synonym: "prechordal mesenchyme" EXACT [] is_a: UBERON:0002050 ! embryonic structure intersection_of: UBERON:0005423 ! developing anatomical structure @@ -354944,6 +373128,8 @@ relationship: part_of UBERON:0003068 ! axial mesoderm id: UBERON:0034884 name: juxtaglomerular arteriole subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: EMAPA:27991 is_a: UBERON:0001980 ! arteriole is_a: UBERON:0003644 ! kidney arterial blood vessel @@ -354955,6 +373141,8 @@ property_value: editor_note "compare with afferent arteriole" xsd:string id: UBERON:0034885 name: viscerocranial mucosa def: "Nonparenchymatous organ which consists of mucosae of the nose, mouth, pharyngotympanic tube, pharynx and larynx. Examples: There is only one viscerocranial mucosa." [FMA:59658] +subset: human_subset +subset: mouse_subset xref: FMA:59658 is_a: UBERON:0000344 ! mucosa relationship: part_of UBERON:0007811 ! craniocervical region @@ -354962,6 +373150,8 @@ relationship: part_of UBERON:0007811 ! craniocervical region [Term] id: UBERON:0034888 name: primary motor cortex layer 1 +subset: human_subset +subset: mouse_subset synonym: "primary motor cortex lamina 1" RELATED [NLX:152661] synonym: "primary motor cortex lamina I" RELATED [NLX:152661] xref: NLX:152661 @@ -354974,6 +373164,8 @@ relationship: part_of UBERON:0005390 {source="NIFSTD"} ! cortical layer I id: UBERON:0034889 name: posterior parietal cortex def: "The posterior parietal cortex is a portion of the parietal lobe which manipulates mental images, and integrates sensory and motor portions of the brain. Some sources say that it consists of Brodmann area 5 and Brodmann area 7. Other sources say it is only area 7." [Wikipedia:Posterior_parietal_cortex] +subset: human_subset +subset: mouse_subset synonym: "PoPC" RELATED OMO:0003000 [DHBA:10214] xref: DHBA:10214 xref: Wikipedia:Posterior_parietal_cortex @@ -354984,6 +373176,8 @@ relationship: part_of UBERON:0016530 {source="DHBA"} ! parietal cortex id: UBERON:0034891 name: insular cortex subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cortex of insula" EXACT [FMA:242223] synonym: "gray matter of insula" RELATED [FMA:242223] synonym: "ICx" RELATED OMO:0003000 [DHBA:10288] @@ -355004,6 +373198,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0034892 name: granular insular cortex def: "Granular region of the insular cortex." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "area Ig of Mesulam" RELATED [NeuroNames:1192] synonym: "cortex insularis granularis" RELATED OMO:0003011 [NeuroNames:1192] synonym: "granular domain" RELATED [NeuroNames:1192] @@ -355024,6 +373220,8 @@ relationship: part_of UBERON:0034891 ! insular cortex id: UBERON:0034893 name: agranular insular cortex def: "Agranular region of the insular cortex." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "cortex insularis dysgranularis" RELATED OMO:0003011 [NeuroNames:1780] synonym: "dysgranular insula" RELATED [NeuroNames:1780] synonym: "dysgranular insular area" RELATED [NeuroNames:1780] @@ -355041,6 +373239,8 @@ relationship: part_of UBERON:0034891 ! insular cortex [Term] id: UBERON:0034894 name: lateral nucleus of stria terminalis +subset: human_subset +subset: mouse_subset synonym: "BSTL" RELATED OMO:0003000 [NLX:54921] synonym: "lateral bed nucleus of stria terminalis" RELATED [NLX:54921] synonym: "lateral bed nucleus of the stria terminalis" RELATED [NLX:54921] @@ -355055,6 +373255,8 @@ relationship: part_of UBERON:0001880 {source="NIFSTD"} ! bed nucleus of stria te [Term] id: UBERON:0034895 name: medial nucleus of stria terminalis +subset: human_subset +subset: mouse_subset synonym: "BSTM" RELATED OMO:0003000 [NLX:80623] synonym: "medial bed nucleus of stria terminalis" RELATED [NLX:80623] synonym: "medial bed nucleus of the stria terminalis" RELATED [NLX:80623] @@ -355067,6 +373269,8 @@ relationship: part_of UBERON:0001880 {source="NIFSTD"} ! bed nucleus of stria te [Term] id: UBERON:0034896 name: ansa peduncularis +subset: human_subset +subset: mouse_subset synonym: "ansa peduncularis in thalamo" EXACT [FMA:TA] synonym: "ansa peduncularis in thalamus" EXACT [FMA:62071] synonym: "AP" RELATED OMO:0003000 [DHBA:266441591] @@ -355084,6 +373288,8 @@ relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fib id: UBERON:0034898 name: alveolar ridge of premaxilla def: "The thickened ridge of bone that contains the tooth sockets on the premaxilla." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pars dentalis of premaxilla" EXACT [AAO:0000397] xref: AAO:0000397 is_a: UBERON:0004103 ! alveolar ridge @@ -355095,6 +373301,8 @@ relationship: part_of UBERON:0002244 {source="AAO"} ! premaxilla id: UBERON:0034900 name: palatine process of premaxilla def: "Lingual ledge on the inner surface of the premaxilla." [AAO:0000414, AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "pars palatina of premaxilla" EXACT [AAO:0000414] xref: AAO:0000414 is_a: UBERON:0010313 ! neural crest-derived structure @@ -355107,6 +373315,8 @@ property_value: taxon_notes "A posterior extension of the premaxilla that lies a id: UBERON:0034901 name: cervical sympathetic nerve trunk def: "The cervical ganglia are paravertebral ganglia of the sympathetic nervous system. These emerging postganglionic nerves synapse with preganglionic nerves from the thoracic spinal cord. They consist of three paravertebral ganglia: superior cervical ganglion middle cervical ganglion inferior cervical ganglion. The inferior ganglion may be fused with the first thoracic ganglion to form a single structure, the stellate ganglion. Nerves emerging from cervical sympathetic ganglia contribute to the cardiac plexus, among other things." [Wikipedia:Cervical_ganglia] +subset: human_subset +subset: mouse_subset synonym: "cervical part of sympathetic trunk" EXACT [FMA:6261] synonym: "cervical sympathetic chain" EXACT [FMA:6261] synonym: "cervical sympathetic trunk" EXACT [FMA:6261] @@ -355121,6 +373331,8 @@ relationship: part_of UBERON:0005434 ! cervical region [Term] id: UBERON:0034902 name: sacral sympathetic nerve trunk +subset: human_subset +subset: mouse_subset synonym: "pelvic sympathetic nerve trunk" RELATED [MA:0001164] synonym: "pelvic sympathetic trunk" RELATED [] synonym: "sacral part of sympathetic trunk" EXACT [FMA:6264] @@ -355138,6 +373350,8 @@ relationship: part_of UBERON:0005473 ! sacral region id: UBERON:0034903 name: left atrium endocardium def: "Endocardium that is part of the left atrium." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "endocardium of left atrium" EXACT [FMA:7286] synonym: "left atrial endocardium" EXACT [] synonym: "left atrium endocardial tissue" RELATED [VHOG:0001226] @@ -355153,6 +373367,8 @@ property_value: external_definition "Endocardium of atrium which is continuous w [Term] id: UBERON:0034905 name: gland lumen +subset: human_subset +subset: mouse_subset synonym: "lumen of gland" EXACT [] is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space @@ -355164,6 +373380,8 @@ relationship: part_of UBERON:0002530 ! gland id: UBERON:0034907 name: pineal parenchyma def: "Parenchymal tissue that forms the pineal gland." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: NCIT:C41834 xref: UMLS:C1519088 is_a: UBERON:0005158 ! parenchyma of central nervous system @@ -355175,6 +373393,8 @@ relationship: part_of UBERON:0001905 ! pineal body id: UBERON:0034908 name: scapular muscle def: "Any of the muscles that are responsible for moving the scapula. In humans these are the levator scapulae, the infraspinatus muscle, the teres major, the teres minor, and the supraspinatus muscle." [HPO:curators] +subset: human_subset +subset: mouse_subset is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate intersection_of: UBERON:0014892 ! skeletal muscle organ, vertebrate intersection_of: attaches_to UBERON:0006849 ! scapula @@ -355185,6 +373405,8 @@ id: UBERON:0034909 name: intermaxillary suture def: "A cranial suture in the midline of the skull that connects the left and right maxilla bones." [http://www.researchgate.net/publication/255909975_Relationship_between_intermaxillary_suture_and_midline_diastema, https://orcid.org/0000-0001-5889-4463] comment: in humans, the upper maxillae (the upper jaw) is composed of the right and left maxilla bones, which are fused in the midline at the intermaxillary suture to form the upper jaw.[https://orcid.org/0000-0001-5889-4463] +subset: human_subset +subset: mouse_subset synonym: "intermaxillary suture of skull" EXACT [FMA:52963] xref: FMA:52963 is_a: UBERON:0003685 ! cranial suture @@ -355197,6 +373419,8 @@ relationship: part_of UBERON:0001709 ! upper jaw region [Term] id: UBERON:0034910 name: medial pretectal nucleus +subset: human_subset +subset: mouse_subset synonym: "medial pretectal area" RELATED [NeuroNames:1176] synonym: "medial pretectal nucleus" RELATED [NeuroNames:1176] synonym: "MPT" RELATED OMO:0003000 [DHBA:12184, DMBA:16585] @@ -355211,6 +373435,8 @@ relationship: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0034918 name: anterior pretectal nucleus +subset: human_subset +subset: mouse_subset synonym: "anterior (ventral /principal) pretectal nucleus" EXACT [DHBA:12187] synonym: "anterior pretectal nucleus" RELATED [NeuroNames:1116] xref: DHBA:12187 @@ -355227,6 +373453,8 @@ property_value: editor_note "consider merging with olivary; however, Butler and id: UBERON:0034919 name: juvenile stage def: "The stage of being no more dependent of the nest and/or from caregivers for subsistence while having not reach sexual maturity." [Bgee:AN, https://github.com/obophenotype/uberon/issues/645] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by UBERON:0034920 {gci_relation="part_of", gci_filler="NCBITaxon:40674"} ! infant stage relationship: part_of UBERON:0000112 ! sexually immature stage @@ -355238,6 +373466,8 @@ property_value: dc:contributor https://github.com/cmungall id: UBERON:0034920 name: infant stage def: "Nursing stage that follows the neonate stage in mammals and ends at weaning." [Bgee:AN, https://github.com/obophenotype/uberon/issues/644] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by UBERON:0007221 ! neonate stage relationship: in_taxon NCBITaxon:40674 ! Mammalia @@ -355250,6 +373480,8 @@ id: UBERON:0034921 name: multi organ part structure def: "An multicellular anatomical structure that has subparts of multiple organs as a part." [CARO:0020001] subset: common_anatomy +subset: human_subset +subset: mouse_subset synonym: "anatomical cluster" RELATED [CARO:0020001] xref: CARO:0020001 is_a: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure @@ -355263,6 +373495,8 @@ id: UBERON:0034922 name: cell cluster def: "A cluster of cells, largely surrounded by a morphological boundary." [CARO:0020002] subset: common_anatomy +subset: human_subset +subset: mouse_subset xref: CARO:0020002 xref: FMA:62807 is_a: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure @@ -355276,6 +373510,8 @@ id: UBERON:0034923 name: disconnected anatomical group def: "Material anatomical entity consisting of multiple anatomical structures that are not connected to each other." [CARO:0020000] subset: common_anatomy +subset: human_subset +subset: mouse_subset xref: CARO:0020000 xref: FBbt:00007276 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000465 {source="CARO"} ! material anatomical entity @@ -355292,6 +373528,8 @@ name: aligned anatomical group def: "An anatomical group whose members are arranged in a line." [CARO:0002002] comment: Examples include the rows of sense organs commonly found in the cuticles of insects. subset: common_anatomy +subset: human_subset +subset: mouse_subset xref: CARO:0002002 is_a: UBERON:0034923 {source="CARO"} ! disconnected anatomical group relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae @@ -355303,6 +373541,8 @@ id: UBERON:0034925 name: anatomical collection def: "A collection of anatomical structures that are alike in terms of their morphology or developmental origin." [http://orcid.org/0000-0002-6601-2165] subset: common_anatomy +subset: human_subset +subset: mouse_subset is_a: UBERON:0000465 ! material anatomical entity relationship: has_member UBERON:0000061 ! anatomical structure relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae @@ -355315,6 +373555,8 @@ id: UBERON:0034926 name: anatomical row def: "An anatomical collection that is arranged in a line." [http://orcid.org/0000-0002-6601-2165] subset: common_anatomy +subset: human_subset +subset: mouse_subset xref: FBbt:00100152 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034925 ! anatomical collection relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae @@ -355327,6 +373569,8 @@ id: UBERON:0034927 name: arcuate artery of foot def: "The arcuate artery of the foot (metatarsal artery) arises a little anterior to the lateral tarsal artery; it passes lateralward, over the bases of the metatarsal bones, beneath the tendons of the Extensor digitorum brevis, its direction being influenced by its point of origin; and its anastomoses with the lateral tarsal and lateral plantar arteries. This vessel gives off the second, third, and fourth dorsal metatarsal arteries. It is not present in all individuals." [Wikipedia:Arcuate_artery_of_the_foot] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:44594 xref: SCTID:244331005 xref: Wikipedia:Arcuate_artery_of_the_foot @@ -355340,6 +373584,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0034928 name: dorsal surface of penis +subset: human_subset +subset: mouse_subset synonym: "dorsum of penis" EXACT [FMA:19623] synonym: "dorsum penis" EXACT [FMA:TA] xref: FMA:19623 @@ -355353,6 +373599,8 @@ relationship: part_of UBERON:0000989 ! penis id: UBERON:0034929 name: external soft tissue zone def: "A region or zone on the surface of an organism that encompasses skin and any adnexa, down through muscles and bounded by underlying skeletal support structures." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010000 ! multicellular anatomical structure relationship: has_part UBERON:0000014 ! zone of skin relationship: has_part UBERON:0001015 ! musculature @@ -355374,6 +373622,8 @@ property_value: function_notes "the auricular feathers play a role in hearing by id: UBERON:0034931 name: perforant path def: "A pathway of fibers originating in the lateral part of the entorhinal area, perforating the subiculum of the hippocampus, and running into the stratum moleculare of the hippocampus, where these fibers synapse with others that go to the dentate gyrus. (Dorland, 28th ed)." [MESH:A08.612.600] +subset: human_subset +subset: mouse_subset synonym: "perf" RELATED OMO:0003000 [DHBA:12080] synonym: "perforant path" RELATED [MESH:A08.612.600] synonym: "perforant pathway" RELATED [MESH:A08.612.600] @@ -355403,6 +373653,8 @@ relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fib id: UBERON:0034932 name: epithelium of biliary system def: "The epithelial layer covering the biliary system. This includes the epithelium of the gallbladder (when present) as well as the intrahepatic and extrahepatic bile ducts." [BTO:0001513, http://orcid.org/0000-0002-6601-2165, MGI:cs] +subset: human_subset +subset: mouse_subset synonym: "biliary epithelium" RELATED [BTO:0001513] synonym: "biliary system epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "biliary tract epithelium" RELATED [http://orcid.org/0000-0002-6601-2165] @@ -355416,6 +373668,8 @@ relationship: part_of UBERON:0002294 ! biliary system id: UBERON:0034933 name: layer of smooth muscle tissue def: "Any organ component layer that consists of smooth muscle tissue." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0018260 ! layer of muscle tissue intersection_of: UBERON:0004923 ! organ component layer intersection_of: composed_primarily_of UBERON:0001135 ! smooth muscle tissue @@ -355425,6 +373679,8 @@ relationship: composed_primarily_of UBERON:0001135 ! smooth muscle tissue id: UBERON:0034934 name: Weber's gland def: "One of the lingual glands located on the lateral margins of the tongue, at the level of the foliate papillae and in the root of the tongue behind the circumvallate papillae." [MGI:anna, PMCID:PMC2667924] +subset: human_subset +subset: mouse_subset synonym: "gland of Weber" EXACT [] synonym: "posterior superficial lingual gland" EXACT [MGI:anna] is_a: UBERON:0001830 ! minor salivary gland @@ -355436,6 +373692,8 @@ property_value: taxon_notes "in humans, the ducts of posterior superficial lingu id: UBERON:0034935 name: pars plicata of ciliary body def: "Corrugated anterior region of ciliary body where ciliary processes arise." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "ciliary crown" EXACT [FMA:58431] synonym: "corona ciliaris" EXACT [FMA:58431] xref: FMA:58431 @@ -355448,6 +373706,8 @@ relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body id: UBERON:0034936 name: pars plana of ciliary body def: "Flattened posterior region of ciliary body." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "ciliary ring" EXACT [FMA:58480] synonym: "orbiculus ciliaris" EXACT [FMA:58480] xref: FMA:58480 @@ -355498,6 +373758,8 @@ property_value: development_notes "the mucocartilage dedifferentiaes to mesenchy id: UBERON:0034940 name: venous sinus cavity def: "An enlarged chamber in the blood sinus capable of accumulating a large volume of blood." [GOC:YMB, ZFA:0007073] +subset: human_subset +subset: mouse_subset synonym: "blood sinus cavity" EXACT [ZFA:0007073] synonym: "blood sinus lumen" EXACT [ZFA:0007073] xref: ZFA:0007073 @@ -355511,6 +373773,7 @@ relationship: part_of UBERON:0006615 ! venous sinus id: UBERON:0034941 name: blood sinus of vibrissa def: "The sinuses of Vibrissae are the walls of blood spaces surrounding the roots of vibrissae." [MURDOCH:1838] +subset: mouse_subset synonym: "blood sinus" BROAD [] synonym: "lower cavernous sinus" NARROW SENSU [] synonym: "ring sinus" NARROW [] @@ -355528,6 +373791,7 @@ relationship: surrounds UBERON:0011937 ! vibrissa root sheath id: UBERON:0034942 name: vibrissal follicle-sinus complex def: "A sensory receptor of the mammalian integument system that consist of a blood sinus plus follicle, and sometimes concentric rings of epidermal tissue." [PMID:16342212] +subset: mouse_subset synonym: "F-SC" RELATED OMO:0003000 [] is_a: UBERON:0012451 ! sensory receptor relationship: has_part UBERON:0010419 ! vibrissa follicle @@ -355554,6 +373818,8 @@ property_value: function_notes "seasonal receptor[PMID:23820554]" xsd:string [Term] id: UBERON:0034944 name: zone of organ +subset: human_subset +subset: mouse_subset synonym: "organ region with floating fiat boundary" RELATED [FMA:55268] synonym: "organ sector" EXACT [FMA:55268] synonym: "organ zonal region" EXACT [] @@ -355565,6 +373831,8 @@ is_a: UBERON:0000064 ! organ part id: UBERON:0034945 name: excreted gas def: "Any gaseous product of an excretory process." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000174 ! excreta is_a: UBERON:0034873 ! bodily gas intersection_of: UBERON:0034873 ! bodily gas @@ -355576,6 +373844,8 @@ id: UBERON:0034946 name: gas excreted from digestive tract def: "Any excreted gas that is produced by the digestive tract." [http://orcid.org/0000-0002-6601-2165] comment: In mammals, mostly produced as a byproduct of bacterial fermentation in the gastrointestinal (GI) tract, especially the colon, and excreted through the rectum +subset: human_subset +subset: mouse_subset synonym: "flatulence" NARROW [FMA:78440] synonym: "flatus" NARROW OMO:0003011 [Wikipedia:Flatulence] synonym: "intestinal gas" NARROW [] @@ -355589,6 +373859,8 @@ relationship: produced_by UBERON:0001555 ! digestive tract id: UBERON:0034947 name: gas in respiratory system def: "Any portion of gas located in a part of the respiratory system." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "respiratory gas" EXACT [] synonym: "respiratory system gas" EXACT [] is_a: UBERON:0034873 ! bodily gas @@ -355600,6 +373872,8 @@ relationship: located_in UBERON:0001004 ! respiratory system id: UBERON:0034948 name: carbon dioxide in respiratory system def: "Any portion of gas located in a part of the respiratory system that is composed primarily of carbon dioxide." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "respiratory CO2" EXACT [] synonym: "respiratory system CO2" EXACT [] is_a: UBERON:0034947 ! gas in respiratory system @@ -355612,6 +373886,8 @@ relationship: located_in UBERON:0001004 ! respiratory system [Term] id: UBERON:0034949 name: lymphatic valve +subset: human_subset +subset: mouse_subset synonym: "lymphatic vessel valve" EXACT [FMA:68454] xref: FMA:68454 is_a: UBERON:0003978 ! valve @@ -355642,6 +373918,8 @@ is_a: UBERON:0034950 ! lymph sac of lymph heart id: UBERON:0034953 name: embryonic lymph sac def: "A population of lymphatic endothelial cell precursors that will form the lymph vessels." [DOI:10.1152/japplphysiol.00201.2013, https://github.com/obophenotype/uberon/issues/1383] +subset: human_subset +subset: mouse_subset synonym: "primary lymph sac" RELATED [] xref: NCIT:C34262 xref: UMLS:C1514424 @@ -355654,6 +373932,8 @@ relationship: part_of UBERON:0006558 {source="VHOG"} ! lymphatic part of lymphoi id: UBERON:0034958 name: retroperitoneal embryonic lymph sac def: "An embryonic lymph sac that forms in the root of the mesentery on the posterior abdominal wall." [https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system, https://github.com/obophenotype/uberon/issues/1383] +subset: human_subset +subset: mouse_subset xref: NCIT:C34285 xref: UMLS:C1514922 is_a: UBERON:0034953 ! embryonic lymph sac @@ -355699,6 +373979,8 @@ property_value: taxon_notes "Flightless ratite birds apparently use a lymphatic id: UBERON:0034963 name: lateral fornix of vagina def: "The vaginal fornix that is to the side of the cervix." [Wikipedia:Vaginal_fornix] +subset: human_subset +subset: mouse_subset synonym: "lateral part of fornix of vagina" EXACT [FMA:19988] synonym: "pars lateralis fornicis vaginae" EXACT OMO:0003011 [FMA:TA] xref: FMA:19988 @@ -355709,6 +373991,8 @@ id: UBERON:0034964 name: superficial epigastric artery def: "An artery that arises from the femoral artery and supplies the abdominal wall. It distributes branches to the superficial subinguinal lymph glands, the superficial fascia, and the integument; it anastomoses with branches of the inferior epigastric, and with its fellow of the opposite side." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Superficial_epigastric_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:20734 xref: SCTID:368079006 xref: Wikipedia:Superficial_epigastric_artery @@ -355727,6 +374011,8 @@ id: UBERON:0034965 name: middle thyroid vein def: "The middle thyroid vein collects the blood from the lower part of the thyroid gland, and after being joined by some veins from the larynx and trachea, ends in the lower part of the internal jugular vein." [Wikipedia:Middle_thyroid_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:50823 xref: SCTID:303422002 xref: Wikipedia:Middle_thyroid_vein @@ -355738,6 +374024,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0034968 name: sagittal sulcus def: "A sulcus that lies within the longitudinal fissure." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Sagittal_sulcus] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Sagittal_sulcus is_a: UBERON:0013118 ! sulcus of brain relationship: part_of UBERON:0002921 ! longitudinal fissure @@ -355745,6 +374033,8 @@ relationship: part_of UBERON:0002921 ! longitudinal fissure [Term] id: UBERON:0034969 name: epithelial layer of duct +subset: human_subset +subset: mouse_subset synonym: "duct epithelium" RELATED [] synonym: "ductal epithelium" RELATED [] xref: NCIT:C25787 @@ -355759,6 +374049,8 @@ relationship: part_of UBERON:0000058 ! duct id: UBERON:0034971 name: aortic body def: "One of several small clusters of chemoreceptors, baroreceptors, and supporting cells located along the aortic arch." [Wikipedia:Aortic_body] +subset: human_subset +subset: mouse_subset synonym: "aortic bodies" RELATED OMO:0003004 [Wikipedia:Aortic_body] synonym: "aortic glands" RELATED OMO:0003004 [Wikipedia:Aortic_body] synonym: "Zuckerkandl's body" RELATED [Wikipedia:Aortic_body] @@ -355778,6 +374070,8 @@ relationship: part_of UBERON:0004535 ! cardiovascular system id: UBERON:0034972 name: jugular body def: "A nonchromaffin paraganglion located in the wall of the jugular bulb." [MESH:A08.800.550.700.120.600.350] +subset: human_subset +subset: mouse_subset synonym: "glomus jugulare" EXACT [] synonym: "glomus tympanicum" EXACT [] synonym: "jugulotympanic body" EXACT [FMA:50848] @@ -355794,6 +374088,8 @@ relationship: part_of UBERON:0034980 {source="cjm"} ! jugular bulb id: UBERON:0034978 name: paraganglion (generic) def: "A cluster of neuroendocrine cells derived from neural crest. Paraganglia may be chromaffin or nonchromaffin." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Paraganglion] +subset: human_subset +subset: mouse_subset synonym: "paraganglia" RELATED OMO:0003004 [] xref: FMA:15648 xref: SCTID:281695005 @@ -355808,6 +374104,8 @@ property_value: editor_note "corresponding portion of CL needs fixed" xsd:string id: UBERON:0034979 name: nonchromaffin paraganglion def: "A cluster of chemoreceptive and support cells associated with blood vessels and nerves." [MESH:A08.800.550.700.120.600, Wikipedia:Paraganglion] +subset: human_subset +subset: mouse_subset xref: MESH:D010234 is_a: UBERON:0034978 ! paraganglion (generic) relationship: capable_of GO:0009593 ! detection of chemical stimulus @@ -355815,6 +374113,8 @@ relationship: capable_of GO:0009593 ! detection of chemical stimulus [Term] id: UBERON:0034980 name: jugular bulb +subset: human_subset +subset: mouse_subset synonym: "bulb of jugular vein" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube @@ -355824,6 +374124,8 @@ relationship: part_of UBERON:0001586 {source="FMA"} ! internal jugular vein id: UBERON:0034981 name: superior bulb of internal jugular vein subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "bulbus superior venae jugularis" EXACT [FMA:TA] synonym: "superior bulb of jugular vein" EXACT [FMA:50805] xref: FMA:50805 @@ -355835,6 +374137,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0034982 name: inferior bulb of internal jugular vein subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "bulbus inferior venae jugularis" EXACT [FMA:TA] synonym: "inferior bulb of jugular vein" EXACT [FMA:50807] xref: FMA:50807 @@ -355846,6 +374150,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0034983 name: ischial tuberosity def: "A horizontal thickening onto which the muscles of the femur, such as the quadriceps and hamstring, attach." [MURDOCH:1034] +subset: human_subset +subset: mouse_subset synonym: "ischial tuberosities" RELATED [Wikipedia:Tuberosity_of_the_ischium] synonym: "ischial tuberosity" RELATED [Wikipedia:Tuberosity_of_the_ischium] synonym: "tuber ischiadicum" RELATED [Wikipedia:Tuberosity_of_the_ischium] @@ -355860,6 +374166,8 @@ is_a: UBERON:0005813 {source="FMA"} ! tubercle id: UBERON:0034984 name: nerve to quadratus femoris def: "The nerve to quadratus femoris is a nerve that provides innervation to the quadratus femoris and gemellus inferior muscles." [Wikipedia:Nerve_to_quadratus_femoris] +subset: human_subset +subset: mouse_subset synonym: "nerve to quadratus femoris" RELATED [Wikipedia:Nerve_to_quadratus_femoris] synonym: "nerve to the quadratus femoris" RELATED [Wikipedia:Nerve_to_quadratus_femoris] synonym: "nerve to the quadratus femoris and gemellus inferior" RELATED [Wikipedia:Nerve_to_quadratus_femoris] @@ -355879,6 +374187,8 @@ id: UBERON:0034986 name: sacral nerve plexus def: "A nerve plexus which provides motor and sensory nerves for the posterior thigh, most of the lower leg, the entire foot, and part of the pelvis." [Wikipedia:Sacral_plexus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "plexus sacralis" EXACT [FMA:TA] synonym: "plexus sacralis" RELATED [Wikipedia:Sacral_plexus] synonym: "sacral plexus" EXACT [FMA:5909] @@ -355894,6 +374204,8 @@ id: UBERON:0034987 name: lumbar nerve plexus def: "A nervous plexus in the lumbar region of the body which forms part of the lumbosacral plexus." [Wikipedia:Lumbar_plexus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "femoral plexus" RELATED [Wikipedia:Lumbar_plexus] synonym: "lumbar plexus" EXACT [FMA:5908] synonym: "plexus lumbalis" EXACT [FMA:TA] @@ -355908,6 +374220,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0034988 name: tendon of obturator internus +subset: human_subset +subset: mouse_subset synonym: "obturator internus tendon" EXACT [FMA:22300] synonym: "tendon of obturator internus muscle" RELATED [FMA:22300] xref: FMA:22300 @@ -355917,6 +374231,8 @@ is_a: UBERON:0000043 {source="FMA"} ! tendon [Term] id: UBERON:0034989 name: amygdalopiriform transition area +subset: human_subset +subset: mouse_subset synonym: "amygdalopiriform TA" RELATED [NeuroNames:1971] synonym: "amygdalopiriform transition area" RELATED [NeuroNames:1971] synonym: "postpiriform transition area" EXACT [NeuroNames:1971] @@ -355933,6 +374249,8 @@ relationship: part_of UBERON:0001876 {source="MA"} ! amygdala id: UBERON:0034991 name: anterior cortical amygdaloid nucleus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "anterior cortical amygdaloid area" RELATED [DMBA:16000] xref: DMBA:16000 xref: EMAPA:35128 @@ -355946,6 +374264,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0034993 name: basal ventral medial nucleus of thalamus +subset: human_subset +subset: mouse_subset synonym: "basal ventral medial thalamic nucleus" EXACT [EMAPA:35165] xref: EMAPA:35165 xref: FMA:84344 @@ -355959,6 +374279,8 @@ relationship: part_of UBERON:0002739 {source="EMAPA"} ! medial dorsal nucleus of [Term] id: UBERON:0034994 name: hindbrain cortical intermediate zone +subset: human_subset +subset: mouse_subset synonym: "hindbrain mantle layer" EXACT [EMAPA:32917] xref: DHBA:12682 xref: EMAPA:32917 @@ -355971,6 +374293,8 @@ relationship: part_of UBERON:0002028 ! hindbrain id: UBERON:0034995 name: jaw mesenchyme def: "Mesenchyme that is part of a developing jaw [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:32907 xref: EMAPA:35454 is_a: UBERON:0003104 ! mesenchyme @@ -355981,6 +374305,8 @@ relationship: part_of UBERON:0011595 ! jaw region [Term] id: UBERON:0034996 name: outer renal medulla loop of Henle +subset: human_subset +subset: mouse_subset synonym: "loop of Henle, outer medullary portion" EXACT [EMAPA:28322] xref: EMAPA:28322 is_a: UBERON:0034997 ! renal medulla loop of Henle @@ -355991,6 +374317,8 @@ relationship: part_of UBERON:0001293 ! outer medulla of kidney [Term] id: UBERON:0034997 name: renal medulla loop of Henle +subset: human_subset +subset: mouse_subset synonym: "loop of Henle of renal medulla" EXACT [EMAPA:35460] synonym: "loop of Henle, medullary portion" EXACT [] xref: EMAPA:35460 @@ -356002,6 +374330,8 @@ relationship: part_of UBERON:0000362 ! renal medulla [Term] id: UBERON:0034999 name: posterolateral cortical amygdaloid nucleus +subset: human_subset +subset: mouse_subset synonym: "cortical amygdalar nucleus, posterior part, lateral zone" RELATED [NeuroNames:3249] synonym: "PLCo" RELATED OMO:0003000 [DMBA:15999] synonym: "posterolateral cortical amygdalar nucleus" RELATED [NeuroNames:3249] @@ -356019,6 +374349,8 @@ relationship: part_of UBERON:0002891 {source="EMAPA"} ! cortical amygdaloid nucl [Term] id: UBERON:0035001 name: posteromedial cortical amygdaloid nucleus +subset: human_subset +subset: mouse_subset synonym: "cortical amygdalar nucleus, posterior part, medial zone" RELATED [NeuroNames:3250] synonym: "PMCo" RELATED OMO:0003000 [DMBA:15950] synonym: "posteromedial cortical amygdalar nucleus" RELATED [NeuroNames:3250] @@ -356035,6 +374367,8 @@ relationship: part_of UBERON:0002891 {source="EMAPA"} ! cortical amygdaloid nucl [Term] id: UBERON:0035004 name: preputial swelling +subset: human_subset +subset: mouse_subset xref: EMAPA:35702 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0005876 {source="EMAPA"} ! undifferentiated genital tubercle @@ -356042,6 +374376,8 @@ relationship: part_of UBERON:0005876 {source="EMAPA"} ! undifferentiated genital [Term] id: UBERON:0035005 name: preputial swelling of male +subset: human_subset +subset: mouse_subset synonym: "prepuce of male" RELATED [EMAPA:29220] xref: EMAPA:29220 is_a: UBERON:0035004 ! preputial swelling @@ -356053,6 +374389,8 @@ relationship: part_of UBERON:0006261 {source="EMAPA"} ! male genital tubercle [Term] id: UBERON:0035006 name: preputial swelling of female +subset: human_subset +subset: mouse_subset synonym: "prepuce of female" RELATED [EMAPA:30478] xref: EMAPA:30478 is_a: UBERON:0035004 ! preputial swelling @@ -356064,6 +374402,8 @@ relationship: part_of UBERON:0006233 {source="EMAPA"} ! female genital tubercle [Term] id: UBERON:0035007 name: nasal concha cartilage +subset: human_subset +subset: mouse_subset synonym: "turbinal cartilage" EXACT [] synonym: "turbinate bone primordium" EXACT [EMAPA:35890] synonym: "turbinate cartilage condensation" EXACT [] @@ -356083,6 +374423,8 @@ property_value: external_ontology_notes "represented as a primordium in EMAPA - [Term] id: UBERON:0035011 name: central gray substance +subset: human_subset +subset: mouse_subset synonym: "central gray" RELATED [NeuroNames:1584] synonym: "central gray substance" RELATED [NeuroNames:1584] synonym: "central grey" RELATED [NeuroNames:1584] @@ -356099,6 +374441,8 @@ is_a: UBERON:0002020 {source="FMA"} ! gray matter [Term] id: UBERON:0035013 name: temporal cortex association area +subset: human_subset +subset: mouse_subset synonym: "temporal association area" RELATED [] synonym: "temporal association areas" RELATED [NeuroNames:1821] synonym: "temporal association cortex" RELATED [NeuroNames:1821] @@ -356116,6 +374460,8 @@ relationship: part_of UBERON:0016538 ! temporal cortex id: UBERON:0035014 name: functional part of brain def: "A brain region defined by functional criteria, e.g. auditory cortex, rather than by structural or histological criteria." [NLX:155513] +subset: human_subset +subset: mouse_subset xref: NLX:155513 is_a: UBERON:0002616 {source="NIFSTD"} ! regional part of brain @@ -356123,6 +374469,8 @@ is_a: UBERON:0002616 {source="NIFSTD"} ! regional part of brain id: UBERON:0035015 name: association cortex def: "Region of the cerebral cortex that integrates diverse sensory or motor information for purposeful action." [NIFSTD:oen_0001107] +subset: human_subset +subset: mouse_subset synonym: "association area" RELATED [NIFSTD:oen_0001107] synonym: "association areas of cortex" RELATED [NeuroNames:1348] synonym: "association cortex" RELATED [NeuroNames:1348] @@ -356134,6 +374482,8 @@ is_a: UBERON:0035014 {source="NIFSTD"} ! functional part of brain [Term] id: UBERON:0035016 name: tactile mechanoreceptor +subset: human_subset +subset: mouse_subset synonym: "contact receptor" EXACT [FMA:85595] xref: FMA:85595 is_a: UBERON:0012449 ! mechanoreceptor @@ -356145,6 +374495,8 @@ relationship: capable_of GO:0050976 ! detection of mechanical stimulus involved id: UBERON:0035017 name: nociceptor nerve ending def: "A peripheral terminal of a peripheral, afferent sensory pain receptor cell that is sensitive to injury or pain, usually caused by extreme thermal exposures, mechanical forces, or other noxious stimuli. The nociceptor nerve ending innervates target tissue and transduces noxious stimuli to the central nervous system via some axon(s)." [MESH:D009619] +subset: human_subset +subset: mouse_subset synonym: "nociceptor" RELATED [https://meshb.nlm.nih.gov/record/ui?ui=D009619] synonym: "pain receptor" RELATED [https://meshb.nlm.nih.gov/record/ui?ui=D009619] xref: MESH:D009619 @@ -356158,6 +374510,8 @@ relationship: part_of CL:0000198 ! pain receptor cell id: UBERON:0035018 name: thermoreceptor def: "Cellular receptors which mediate the sense of temperature. Thermoreceptors in vertebrates are mostly located under the skin. In mammals there are separate types of thermoreceptors for cold and for warmth and NOCICEPTORS which detect cold or heat extreme enough to cause pain." [MESH:A08.800.550.700.840] +subset: human_subset +subset: mouse_subset synonym: "thermoreceptor" RELATED [MESH:A08.800.550.700.840] xref: MESH:D013823 xref: NCIT:C13822 @@ -356170,6 +374524,8 @@ relationship: capable_of GO:0050961 ! detection of temperature stimulus involved [Term] id: UBERON:0035019 name: inferior olive, beta nucleus +subset: human_subset +subset: mouse_subset synonym: "beta subnucleus of the inferior olive" RELATED [NeuroNames:1755] synonym: "inferior olive beta subnucleus" EXACT [MA:0001041] synonym: "inferior olive, beta subnucleus" RELATED [NeuroNames:1755] @@ -356184,6 +374540,8 @@ relationship: part_of UBERON:0002127 {source="DHBA"} ! inferior olivary complex [Term] id: UBERON:0035020 name: left vagus X nerve trunk +subset: human_subset +subset: mouse_subset synonym: "anterior vagus X nerve trunk" RELATED [MA:0001151] synonym: "left vagus neural trunk" EXACT [FMA:18157] synonym: "trunk of left vagus" EXACT [FMA:18157] @@ -356199,6 +374557,8 @@ relationship: in_left_side_of UBERON:0001016 ! nervous system [Term] id: UBERON:0035021 name: right vagus X nerve trunk +subset: human_subset +subset: mouse_subset synonym: "posterior vagus X nerve trunk" RELATED [MA:0001152] synonym: "right vagus neural trunk" EXACT [FMA:18151] synonym: "trunk of right vagus" EXACT [FMA:18151] @@ -356214,6 +374574,8 @@ relationship: in_right_side_of UBERON:0001016 ! nervous system [Term] id: UBERON:0035022 name: trunk of segmental spinal nerve +subset: human_subset +subset: mouse_subset synonym: "segmental spinal nerve trunk" EXACT [MA:0001179] xref: MA:0001179 is_a: UBERON:0005476 ! spinal nerve trunk @@ -356225,6 +374587,8 @@ relationship: part_of UBERON:0005197 ! segmental spinal nerve [Term] id: UBERON:0035024 name: lateral spinal nucleus +subset: human_subset +subset: mouse_subset xref: DMBA:17690 xref: EMAPA:37634 {source="MA:th"} xref: MA:0002756 @@ -356236,6 +374600,8 @@ relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0035026 name: amygdalohippocampal transition area +subset: human_subset +subset: mouse_subset synonym: "AHTA" RELATED OMO:0003000 [DHBA:10380] xref: DHBA:10380 is_a: UBERON:0002616 ! regional part of brain @@ -356244,6 +374610,8 @@ relationship: part_of UBERON:0034673 ! amygdalohippocampal area [Term] id: UBERON:0035027 name: amygdalohippocampal area, magnocellular division +subset: human_subset +subset: mouse_subset synonym: "AHiAm" RELATED OMO:0003000 [HBA:265504452] xref: HBA:265504452 xref: PBA:10136 @@ -356253,6 +374621,8 @@ relationship: part_of UBERON:0034673 ! amygdalohippocampal area [Term] id: UBERON:0035028 name: amygdalohippocampal area, parvocellular division +subset: human_subset +subset: mouse_subset synonym: "AHiAp" RELATED OMO:0003000 [HBA:265504456] xref: HBA:265504456 xref: PBA:10137 @@ -356263,6 +374633,8 @@ relationship: part_of UBERON:0034673 ! amygdalohippocampal area id: UBERON:0035032 name: abdominal oblique muscle def: "Either the external or internal abdominal oblique muscles." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "oblique abdominal muscle" EXACT [MA:0003024] xref: EMAPA:35603 xref: MA:0003024 @@ -356274,6 +374646,8 @@ relationship: part_of UBERON:0006635 ! anterior abdominal wall id: UBERON:0035034 name: eyelid epithelium def: "An epithelium that is part of an eyelid [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:32758 xref: MA:0003163 is_a: UBERON:0015808 ! eye epithelium @@ -356285,6 +374659,8 @@ relationship: part_of UBERON:0001711 ! eyelid id: UBERON:0035036 name: naris epithelium def: "An epithelium that is part of a naris [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: EMAPA:35959 xref: MA:0003172 is_a: UBERON:0000483 ! epithelium @@ -356295,6 +374671,8 @@ relationship: part_of UBERON:0000003 ! naris [Term] id: UBERON:0035037 name: jaw epithelium +subset: human_subset +subset: mouse_subset xref: EMAPA:32904 xref: MA:0003220 is_a: UBERON:0003929 ! digestive tract epithelium @@ -356306,6 +374684,8 @@ relationship: part_of UBERON:0011595 ! jaw region id: UBERON:0035038 name: carpal tunnel def: "The fibro-osseous passageway on the palmar side of the wrist that connects the distal forearm to the middle compartment of the deep plane of the palm." [Wikipedia:Carpal_tunnel] +subset: human_subset +subset: mouse_subset synonym: "carpal canal" EXACT [FMA:42352] synonym: "carpel tunnel" RELATED [Wikipedia:Carpal_tunnel] xref: FMA:42352 @@ -356320,6 +374700,8 @@ relationship: part_of UBERON:0004452 ! carpal region [Term] id: UBERON:0035039 name: rectal artery +subset: human_subset +subset: mouse_subset synonym: "hemorrhoidal artery" EXACT [] xref: SCTID:277967008 is_a: UBERON:0001637 ! artery @@ -356333,6 +374715,8 @@ id: UBERON:0035040 name: superior rectal artery def: "The superior rectal artery (superior hemorrhoidal artery) is an artery that descends into the pelvis to supply blood to the rectum." [Wikipedia:Superior_rectal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "superior hemorrhoidal" RELATED [Wikipedia:Superior_rectal_artery] synonym: "superior hemorrhoidal artery" EXACT [FMA:14832] synonym: "superior hemorrhoidal artery" RELATED [Wikipedia:Superior_rectal_artery] @@ -356353,6 +374737,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0035041 name: deep temporal artery def: "The deep temporal arteries, two in number, anterior and posterior, ascend between the Temporalis and the pericranium. They supply the muscle, and anastomose with the middle temporal artery. The anterior communicates with the lacrimal artery by means of small branches which perforate the zygomatic bone and great wing of the sphenoid." [Wikipedia:Deep_temporal_arteries] +subset: human_subset +subset: mouse_subset synonym: "anterior deep temporal artery" RELATED [Wikipedia:Deep_temporal_arteries] synonym: "deep temporal arteries" RELATED [Wikipedia:Deep_temporal_arteries] synonym: "deep temporal artery" RELATED [Wikipedia:Deep_temporal_arteries] @@ -356373,6 +374759,8 @@ id: UBERON:0035042 name: middle temporal artery def: "The middle temporal artery arises immediately above the zygomatic arch, and, perforating the temporal fascia, gives branches to the Temporalis, anastomosing with the deep temporal branches of the internal maxillary. It occasionally gives off a zygomaticoC6rbital branch, which runs along the upper border of the zygomatic arch, between the two layers of the temporal fascia, to the lateral angle of the orbit." [Wikipedia:Middle_temporal_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "middle temporal artery" RELATED [Wikipedia:Middle_temporal_artery] xref: FMA:49666 xref: SCTID:146854006 @@ -356387,6 +374775,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0035043 name: temporal branch of lateral pretrosal artery def: "Part of lateral pretrosal artery which supplies blood to the eyelids." [AAO:0010495] +subset: human_subset +subset: mouse_subset synonym: "temporal artery" BROAD [AAO:0010495] xref: AAO:0010495 is_a: UBERON:0001632 ! temporal artery @@ -356400,6 +374790,8 @@ relationship: supplies UBERON:0001711 ! eyelid id: UBERON:0035044 name: olfactory cortex layer 3 def: "Deepest layer of olfactory cortex." [NLX:152611] +subset: human_subset +subset: mouse_subset xref: NLX:152611 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer @@ -356413,6 +374805,8 @@ relationship: part_of UBERON:0002894 {source="nlx"} ! olfactory cortex id: UBERON:0035045 name: parotid gland intralobular duct def: "Any of the tubular canals of the parotid gland located within the parenchymal (secretory) tissue i.e. within lobules; both intercalated and striated (secretory) ducts are intralobular ducts." [MP:0013746] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001837 ! duct of salivary gland is_a: UBERON:0014719 ! intralobular duct intersection_of: UBERON:0014719 ! intralobular duct @@ -356423,6 +374817,8 @@ relationship: part_of UBERON:0001831 ! parotid gland id: UBERON:0035046 name: parotid gland intercalated duct def: "Any of the small intralobular tubular canal that leads directly from the serous acinus of the parotid gland to a striated (secretory) duct; in mouse, the intercalated ducts are short and narrow and are lined by low cuboidal epithelial cells with large central nuclei; they secrete bicarbonate ion into and absorb chloride ion from the acinar product." [MP:0013747] +subset: human_subset +subset: mouse_subset is_a: UBERON:0014727 ! intercalated duct of salivary gland is_a: UBERON:0035045 ! parotid gland intralobular duct intersection_of: UBERON:0014725 ! intercalated duct @@ -356433,6 +374829,8 @@ relationship: part_of UBERON:0001831 ! parotid gland id: UBERON:0035047 name: parotid gland striated duct def: "Any of the intralobular secretory duct of the parotid gland which connects an intercalated duct to an interlobular excretory duct; striated ducts are lined by cuboidal to columnar acidophilic cells and are so-named because of characteristic striations in the basal portions of the cells which are due to the alignment of mitochondria between deep infoldings of the basal cell membrane; the nucleus is in the central part of the cell above the striations; as they approach the excretory ducts, their diameter may exceed that of the acini; striated ducts reabsorb sodium and secrete potassium." [MP:0013748] +subset: human_subset +subset: mouse_subset is_a: UBERON:0014729 ! striated duct of salivary gland is_a: UBERON:0035045 ! parotid gland intralobular duct intersection_of: UBERON:0014729 ! striated duct of salivary gland @@ -356443,6 +374841,8 @@ relationship: part_of UBERON:0001831 ! parotid gland id: UBERON:0035048 name: parotid gland excretory duct def: "Any of the interlobular excretory ducts of the parotid gland which are found in the connective tissue septa and formed by the union of several intralobular striated (secretory) ducts; ultimately, the excretory ducts of the parotid gland coalesce and form a single main excretory duct (Stensen's duct) that opens into the oral cavity; excretory ducts do not change the secretory product." [MP:0013750] +subset: human_subset +subset: mouse_subset is_a: UBERON:0035049 ! excretory duct of salivary gland intersection_of: UBERON:0035050 ! excretory duct intersection_of: part_of UBERON:0001831 ! parotid gland @@ -356452,6 +374852,8 @@ relationship: part_of UBERON:0001831 ! parotid gland id: UBERON:0035049 name: excretory duct of salivary gland def: "Any of the interlobular excretory ducts of a salivary gland which are found in the connective tissue septa and formed by the union of several intralobular striated (secretory) ducts[MP,generalized]." [MP:0013750] +subset: human_subset +subset: mouse_subset xref: FMA:60052 is_a: UBERON:0001837 ! duct of salivary gland is_a: UBERON:0035050 ! excretory duct @@ -356462,12 +374864,16 @@ relationship: part_of UBERON:0001044 ! saliva-secreting gland [Term] id: UBERON:0035050 name: excretory duct +subset: human_subset +subset: mouse_subset xref: BTO:0006341 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0000058 ! duct [Term] id: UBERON:0035053 name: interlobular duct of salivary gland +subset: human_subset +subset: mouse_subset xref: FMA:60053 is_a: UBERON:0014716 ! interlobular duct is_a: UBERON:0035049 ! excretory duct of salivary gland @@ -356479,6 +374885,8 @@ relationship: part_of UBERON:0001044 ! saliva-secreting gland id: UBERON:0035073 name: duct of eccrine sweat gland def: "A duct made up of simple tubular epithelium that is part of an eccrine sweat gland. The main function of the duct of the eccrine sweat gland is the reabsorption of Na and Cl ions as sweat flows through the duct. It has two cell layers: basal and luminal. It is continuous with the secretory coil and goes towards the skin surface. The distal segment of the duct is relatively straight and connects with the acrosyringium in the epidermis. Most of the ion reabsorption occurs in the proximal part of the duct." [PMID:31608304] +subset: human_subset +subset: mouse_subset synonym: "ductal part of eccrine sweat gland" EXACT [FMA:70617] xref: FMA:70617 is_a: UBERON:0000058 ! duct @@ -356490,6 +374898,8 @@ relationship: part_of UBERON:0000423 ! eccrine sweat gland [Term] id: UBERON:0035074 name: duct of apocrine sweat gland +subset: human_subset +subset: mouse_subset synonym: "ductal part of apocrine sweat gland" EXACT [FMA:70643] xref: FMA:70643 is_a: UBERON:0000058 ! duct @@ -356510,6 +374920,8 @@ replaced_by: UBERON:0005483 id: UBERON:0035076 name: parotid gland myoepithelium def: "Epithelium that consists of stellate-shaped contractile cells with long dendritic processes that surround the secretory acini and intercalated ducts of the parotid gland, usually found in the glandular epithelium as a thin layer above the basement membrane but generally beneath the luminal cells; they display features of both smooth muscle and epithelium, such as numerous microfilaments with focal densities in the cytoplasmic processes, and desmosomes which attach them to the epithelial cells; their functions include contraction when the gland is stimulated to secrete, compressing or reinforcing the underlying parenchymal cells, thus aiding in the expulsion of saliva and preventing damage to the other cells." [MGI:anna] +subset: human_subset +subset: mouse_subset xref: EMAPA:37934 {source="MA:th"} is_a: UBERON:0000420 ! myoepithelium is_a: UBERON:0003360 ! epithelium of parotid gland @@ -356521,6 +374933,7 @@ relationship: part_of UBERON:0001831 ! parotid gland id: UBERON:0035077 name: lateral nasal gland def: "Any of the lateral nasal glands (the largest nasal secretory glands in rodents) which surround the maxillary sinus located in the lateral wall adjacent to each nasal passage and are characterized by cytologic features similar to those described for the major serous salivary glands; secretory contents of the LNG drain into the nasal vestibule; the LNG is a major site for the synthesis and secretion of odorant-binding proteins that serve as odorant carriers in nasal mucus; it also, synthesizes large amounts of immunoglobulin A, which is important for immune defense of the upper respiratory tract, and testosterone and salivary androgen-binding proteins, which are likely important in olfaction and reproductive behavior." [MP:0013582] +subset: mouse_subset synonym: "glandula nasalis lateralis" EXACT OMO:0003011 [MP:0013582] synonym: "LNG" RELATED OMO:0003000 [MP:0013582] synonym: "Steno gland" EXACT [MP:0013582] @@ -356534,6 +374947,8 @@ relationship: site_of GO:0002377 ! immunoglobulin production id: UBERON:0035078 name: parotid gland interlobular duct def: "Any of the excretory ducts of the parotid gland which are found in the connective tissue septa i.e. between lobules." [MP:0013749] +subset: human_subset +subset: mouse_subset is_a: UBERON:0035048 ! parotid gland excretory duct is_a: UBERON:0035053 ! interlobular duct of salivary gland intersection_of: UBERON:0014716 ! interlobular duct @@ -356544,6 +374959,8 @@ relationship: part_of UBERON:0001831 ! parotid gland id: UBERON:0035079 name: deep intraparotid lymph node def: "The intraglandular deep parotid lymph nodes are a group of lymph nodes found inside the parotid gland." [Wikipedia:Intraglandular_deep_parotid_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "deep intraparotid node" EXACT [] synonym: "intraglandular deep parotid lymph nodes" EXACT [] xref: SCTID:75040000 @@ -356553,6 +374970,8 @@ is_a: UBERON:0035080 ! intraparotid lymph node [Term] id: UBERON:0035080 name: intraparotid lymph node +subset: human_subset +subset: mouse_subset synonym: "intraparotid node" EXACT [] xref: SCTID:27053001 is_a: UBERON:0015870 ! lymph node of head @@ -356562,6 +374981,7 @@ property_value: editor_note "requires review. Various subtypes include intraglan [Term] id: UBERON:0035081 name: caudofemoralis longus +subset: mouse_subset synonym: "caudofemoralis longus muscle" EXACT [] synonym: "M. caudofemoralis longus" EXACT [] is_a: UBERON:0013221 ! caudofemoralis @@ -356576,6 +374996,7 @@ property_value: taxon_notes "primary extensor of the hip joint in lizards[PMID:2 [Term] id: UBERON:0035082 name: caudofemoralis brevis +subset: mouse_subset synonym: "caudofemoralis brevis muscle" EXACT [] synonym: "M. caudofemoralis brevis" EXACT [] is_a: UBERON:0013221 ! caudofemoralis @@ -356589,6 +375010,8 @@ property_value: taxon_notes "In Anolis, This muscle mostly originates via fleshy id: UBERON:0035083 name: transverse process-bearing vertebra def: "A vertebra that has a transverse process." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pygal vertebra" RELATED [PMID:22753107] synonym: "TP vertebra" RELATED [PMID:22753107] is_a: UBERON:0002412 ! vertebra @@ -356601,6 +375024,8 @@ relationship: has_part UBERON:0001077 ! transverse process of vertebra id: UBERON:0035084 name: non-transverse process-bearing vertebra def: "A vertebra that does not have a transverse process." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "NTP vertebra" RELATED [PMID:22753107] synonym: "postpygal vertebra" RELATED [PMID:22753107] is_a: UBERON:0002412 ! vertebra @@ -356610,6 +375035,8 @@ id: UBERON:0035085 name: anatomical plane def: "A flat anatomical 2D surface that bisects an anatomical structure or an anatomical space." [CARO:0001013, FMA:242982, http://orcid.org/0000-0002-6601-2165, Wikipedia:Plane_(geometry)] comment: All anatomical planes are fiat anatomical boundaries - no morphological boundary could ever be a perfect plane. +subset: human_subset +subset: mouse_subset synonym: "fiat anatomical surface" RELATED [FMA:242982] xref: CARO:0001013 xref: FMA:242982 @@ -356619,6 +375046,8 @@ is_a: UBERON:0006984 {source="FMA"} ! anatomical surface id: UBERON:0035086 name: plane of autotomy def: "An anatomical plane that bisects a zone of weakness in an appendage. When autotamy occurs, the appendage divides along this plane." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Autotomy] +subset: human_subset +subset: mouse_subset is_a: UBERON:0035085 ! anatomical plane relationship: part_of UBERON:0000026 ! appendage property_value: curator_notes "this class is intended for autotomy that bisects an appendage. Other forms of autotomy are possible: for example, a sea cucumber and autotomitize internal organs" xsd:string @@ -356627,6 +375056,8 @@ property_value: curator_notes "this class is intended for autotomy that bisects id: UBERON:0035087 name: fracture plane def: "A plane of autotomy that divides an appendage through a bone." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Autotomy] +subset: human_subset +subset: mouse_subset synonym: "plane of autotomy bisecting bone" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0035086 ! plane of autotomy intersection_of: UBERON:0035086 ! plane of autotomy @@ -356637,6 +375068,8 @@ relationship: overlaps UBERON:0001474 ! bone element id: UBERON:0035088 name: vertebral fracture plane def: "A plane of autotomy that divides an appendage through a vertebral bone." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Autotomy] +subset: human_subset +subset: mouse_subset synonym: "plane of autotomy bisecting vertebral bone" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0035087 ! fracture plane intersection_of: UBERON:0035086 ! plane of autotomy @@ -356649,6 +375082,8 @@ property_value: taxon_notes "Many authors (e.g., Holder, 1960; Mufti and Hafiz, id: UBERON:0035089 name: plane of autotomy bisecting joint def: "A plane of autotomy that divides an appendage in the space between appendage bones." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Autotomy] +subset: human_subset +subset: mouse_subset is_a: UBERON:0035086 ! plane of autotomy intersection_of: UBERON:0035086 ! plane of autotomy intersection_of: overlaps UBERON:0000982 ! skeletal joint @@ -356658,6 +375093,8 @@ relationship: overlaps UBERON:0000982 ! skeletal joint id: UBERON:0035090 name: plane of autotomy bisecting intervertebral joint def: "A plane of autotomy that divides an appendage in the space between vertebrae." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Autotomy] +subset: human_subset +subset: mouse_subset is_a: UBERON:0035089 ! plane of autotomy bisecting joint intersection_of: UBERON:0035086 ! plane of autotomy intersection_of: overlaps UBERON:0001468 ! intervertebral joint @@ -356667,6 +375104,7 @@ relationship: overlaps UBERON:0001468 ! intervertebral joint id: UBERON:0035091 name: extrinsic post-anal tail muscle def: "A post-anal tail that attaches outside the tail." [http://orcid.org/0000-0002-6601-2165] +subset: mouse_subset is_a: UBERON:0003665 ! post-anal tail muscle intersection_of: UBERON:0003665 ! post-anal tail muscle intersection_of: attaches_to UBERON:0010742 ! bone of pelvic complex @@ -356676,6 +375114,7 @@ relationship: attaches_to UBERON:0010742 ! bone of pelvic complex id: UBERON:0035092 name: spinalis caudalis muscle def: "A muscle that originates via thin tendons from the proximal and dorsal aspects of the neural spines and inserts via fleshy fibers onto the lateral aspect of the base of the neural arch." [PMID:22753107] +subset: mouse_subset synonym: "M. spinalis caudalis" EXACT [] synonym: "spinalis caudalis" EXACT [] is_a: UBERON:0035091 {source="PMID:22753107"} ! extrinsic post-anal tail muscle @@ -356689,6 +375128,7 @@ property_value: function_notes "The m. spinalis caudalis is hypothesized to be a [Term] id: UBERON:0035093 name: extensor caudae muscle +subset: mouse_subset synonym: "caudal extensor muscle" EXACT [] is_a: UBERON:0035091 {source="PMID:22753107"} ! extrinsic post-anal tail muscle @@ -356696,6 +375136,7 @@ is_a: UBERON:0035091 {source="PMID:22753107"} ! extrinsic post-anal tail muscle id: UBERON:0035094 name: extensor caudae medialis muscle def: "A muscle that originates via thin tendons from the distal and dorsal aspects of the neural spines. The tendons course proximomedially to distolaterally and give rise to fleshy fibers that insert onto the lateral aspect of the neural arches of each of the vertebrae it crosses. The m. extensor caudae medialis is a continuation of m. semispinalis dorsi into the tail." [PMID:22753107] +subset: mouse_subset synonym: "extensor caudae medialis" EXACT [] synonym: "M. externsor caudae medialis" EXACT [] is_a: UBERON:0035093 ! extensor caudae muscle @@ -356709,6 +375150,7 @@ relationship: has_muscle_origin UBERON:0001076 ! neural spine id: UBERON:0035095 name: extensor caudae lateralis muscle def: "A muscle that originates via a robust tendon from a tuberosity on the cranial aspect of the iliac crest and via fleshy fibers from the caudoventral aspect of the pelvis, the lateral aspects of the transverse processes of Ca2-8 or 9, and the horizontal intramuscular septum." [PMID:22753107] +subset: mouse_subset synonym: "extensor caudae lateralis" EXACT [] synonym: "M. externsor caudae lateralis" EXACT [] is_a: UBERON:0035093 ! extensor caudae muscle @@ -356721,6 +375163,7 @@ relationship: has_muscle_origin UBERON:0014437 ! iliac crest [Term] id: UBERON:0035096 name: fascia of tail +subset: mouse_subset is_a: UBERON:0003599 ! tail connective tissue is_a: UBERON:0008982 ! fascia intersection_of: UBERON:0008982 ! fascia @@ -356731,6 +375174,7 @@ relationship: part_of UBERON:0007812 ! post-anal tail id: UBERON:0035097 name: iliocaudalis muscle def: "A muscle that attaches to the iliac crest and to a caudal vertebra." [http://orcid.org/0000-0002-6601-2165, PMID:22753107] +subset: mouse_subset synonym: "iliocaudalis" EXACT [] synonym: "M. iliocaudalis" EXACT [] is_a: UBERON:0035091 {source="PMID:22753107"} ! extrinsic post-anal tail muscle @@ -356784,6 +375228,8 @@ property_value: function_notes "Like that of m. transversus penis, the function id: UBERON:0035102 name: transverse process of caudal vertebra def: "A transverse process that is part of a caudal vertebra." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001077 ! transverse process of vertebra intersection_of: UBERON:0001077 ! transverse process of vertebra intersection_of: part_of UBERON:0001095 ! caudal vertebra @@ -356792,6 +375238,8 @@ relationship: part_of UBERON:0001095 ! caudal vertebra [Term] id: UBERON:0035103 name: perineal body smooth muscle muscle tissue +subset: human_subset +subset: mouse_subset synonym: "perineal body muscle" EXACT [EMAPA:18923] xref: EMAPA:18923 is_a: UBERON:0004231 ! anal region smooth muscle @@ -356803,6 +375251,8 @@ relationship: part_of UBERON:0006654 ! perineal body [Term] id: UBERON:0035104 name: raphe of penis +subset: human_subset +subset: mouse_subset synonym: "penile raphe" EXACT [FMA:19646] synonym: "raphe penis" EXACT OMO:0003011 [FMA:19646, FMA:TA] xref: FMA:19646 @@ -356821,6 +375271,8 @@ relationship: part_of UBERON:0035106 ! raphe of perineum id: UBERON:0035105 name: sac of scrotum def: "Any of the two testis-carrying compartments of the scrotum." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "scrotal comartment" EXACT [] synonym: "scrotal sac" EXACT [FMA:18251] synonym: "testis comartment" EXACT [] @@ -356835,6 +375287,8 @@ relationship: part_of UBERON:0001300 ! scrotum id: UBERON:0035106 name: raphe of perineum def: "The perineal raphe extends from the anus, through the mid-line of the scrotum (scrotal raphe) and upwards through the posterior mid-line aspect of the penis (penile raphe)." [Wikipedia:Perineal_raphe] +subset: human_subset +subset: mouse_subset synonym: "perineal raphe" EXACT [FMA:20244] synonym: "raphe perinealis" EXACT OMO:0003011 [Wikipedia:Perineal_raphe] synonym: "raphe perinei" EXACT OMO:0003011 [Wikipedia:Perineal_raphe] @@ -356856,6 +375310,8 @@ id: UBERON:0035108 name: temporalis fascia def: "The temporal fascia covers the Temporalis muscle. It is a strong, fibrous investment, covered, laterally, by the Auricularis anterior and superior, by the galea aponeurotica, and by part of the Orbicularis oculi. The superficial temporal vessels and the auriculotemporal nerve cross it from below upward. Above, it is a single layer, attached to the entire extent of the superior temporal line; but below, where it is fixed to the zygomatic arch, it consists of two layers, one of which is inserted into the lateral, and the other into the medial border of the arch. A small quantity of fat, the orbital branch of the superficial temporal artery, and a filament from the zygomatic branch of the maxillary nerve, are contained between these two layers. It affords attachment by its deep surface to the superficial fibers of the Temporalis." [Wikipedia:Temporal_fascia] comment: Request new term but the definition needs revision. +subset: human_subset +subset: mouse_subset synonym: "fascia of temporalis" EXACT [FMA:53996] synonym: "temporal fascia" EXACT [MFMO:0000105] synonym: "temporalis fascia" EXACT [FMA:53996] @@ -356871,6 +375327,8 @@ id: UBERON:0035109 name: plantar nerve def: "A nerve that innervates the sole of the foot. Planar nerves arise from the posterior branch of the tibial nerve." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Plantar_nerve] comment: Divided into medial and plantar based on the location of the foot supplied +subset: human_subset +subset: mouse_subset synonym: "nerve, plantar" RELATED [] xref: https://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray834.svg/180px-Gray834.svg.png xref: NCIT:C77674 @@ -356889,6 +375347,8 @@ relationship: part_of UBERON:0002103 ! hindlimb id: UBERON:0035110 name: lateral plantar nerve def: "A plantar nerve that supplies the lateral side of the plantar part of the foot, including pedal digit 5." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Lateral_plantar_nerve] +subset: human_subset +subset: mouse_subset synonym: "external plantar nerve" EXACT [FMA:44724] synonym: "nervus plantaris lateralis" EXACT OMO:0003011 [Wikipedia:Lateral_plantar_nerve] xref: FMA:44724 @@ -356904,6 +375364,8 @@ relationship: innervates UBERON:0003635 ! pedal digit 5 id: UBERON:0035111 name: medial plantar nerve def: "A plantar nerve that supplies the medial side of the plantar part of the foot, including pedal digit 1." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Lateral_plantar_nerve] +subset: human_subset +subset: mouse_subset synonym: "internal plantar nerve" EXACT [FMA:44716] synonym: "nervus plantaris medialis" EXACT OMO:0003011 [Wikipedia:Medial_plantar_nerve] xref: FMA:44716 @@ -356919,12 +375381,16 @@ id: UBERON:0035112 name: intrinsic muscle def: "Any of the muscles that are entirely within the body part or segment moved by them." [http://medical-dictionary.thefreedictionary.com/intrinsic+muscles] subset: grouping_class +subset: human_subset +subset: mouse_subset is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate property_value: editor_note "ideally we would like to classify under this class automatically but this is difficult to do without applying external rules. Note that logical definitions that use this class as a genus may not be strictly correct" xsd:string [Term] id: UBERON:0035113 name: central part of mediodorsal nucleus of the thalamus +subset: human_subset +subset: mouse_subset synonym: "MDc" RELATED OMO:0003000 [MBA:617] synonym: "mediodorsal nucleus of the thalamus, central part" EXACT [MBA:617] xref: MBA:617 @@ -356934,6 +375400,8 @@ relationship: part_of UBERON:0002739 {source="MBA"} ! medial dorsal nucleus of t [Term] id: UBERON:0035114 name: lateral part of mediodorsal nucleus of the thalamus +subset: human_subset +subset: mouse_subset synonym: "MDl" RELATED OMO:0003000 [MBA:626] synonym: "mediodorsal nucleus of the thalamus, lateral part" EXACT [MBA:626] xref: MBA:626 @@ -356944,6 +375412,8 @@ relationship: part_of UBERON:0002739 {source="MBA"} ! medial dorsal nucleus of t id: UBERON:0035115 name: diastema between central incisors def: "A space or gap between the left and right central incisors, on either the upper or lower jaw." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "interdental space, central incisors" EXACT [] synonym: "midline diastema" EXACT [] is_a: UBERON:0035119 ! diastema between incisors @@ -356956,6 +375426,8 @@ relationship: intersects_midsagittal_plane_of UBERON:0001708 ! jaw skeleton id: UBERON:0035116 name: diastema between upper central incisors def: "A space or gap between the left and right central incisors on the upper jaw." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "interdental space between maxillary central incisors" EXACT [] synonym: "interdental space, upper central incisors" EXACT [] synonym: "midline maxillary diastema" EXACT [] @@ -356971,6 +375443,8 @@ relationship: part_of UBERON:0003277 ! skeleton of upper jaw id: UBERON:0035117 name: diastema between lower central incisors def: "A space or gap between the left and right central incisors on the lower jaw." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "interdental space between mandibular central incisors" EXACT [] synonym: "interdental space, lower central incisors" EXACT [] synonym: "midline mandibular diastema" EXACT [] @@ -356986,6 +375460,8 @@ relationship: part_of UBERON:0003278 ! skeleton of lower jaw id: UBERON:0035118 name: material entity in digestive tract def: "Any material entity that is located in the digestive tract. This includes undigested food and liquid as well as unexcreted waste products. It also includes other entities such as ingested stones used to aid digestion. Any microbial cells or cell populations are also included." [https://github.com/EnvironmentOntology/envo/issues/110] +subset: human_subset +subset: mouse_subset synonym: "digestive tract contents" EXACT OMO:0003004 [] synonym: "ingested material entity" RELATED [] is_a: UBERON:0000061 ! anatomical structure @@ -356998,6 +375474,8 @@ property_value: editor_note "Note that we treat any material entity that is inge id: UBERON:0035119 name: diastema between incisors def: "A space or gap any two incisors. This may be a midline diastema between central incisors, or a diastema located entirely in a single jaw quadrant between lateral incisors." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "incisor diastema" EXACT [] synonym: "interdental space, incisors" EXACT [] is_a: UBERON:0012111 ! diastema @@ -357010,6 +375488,8 @@ relationship: intersects_midsagittal_plane_of UBERON:0001708 ! jaw skeleton id: UBERON:0035120 name: fauces def: "Lateral walls of the oropharynx that are located medial to the palatoglossal folds." [http://www.avdc.org/Nomenclature.pdf] +subset: human_subset +subset: mouse_subset xref: FMA:55019 xref: SCTID:361362001 is_a: UBERON:0000328 ! gut wall @@ -357020,6 +375500,8 @@ relationship: part_of UBERON:0001729 ! oropharynx id: UBERON:0035122 name: interincisive suture def: "Median palatine suture of the palatine processes of the maxillary bones, and the median suture of the palatine bones." [http://www.avdc.org/Nomenclature.pdf] +subset: human_subset +subset: mouse_subset synonym: "incisive suture" RELATED [FMA:75777] synonym: "midline of hard palate" RELATED [] xref: FMA:75777 @@ -357033,6 +375515,8 @@ relationship: part_of UBERON:0003216 ! hard palate id: UBERON:0035123 name: palatomaxillary suture def: "Line of union, in the floor of the orbit, between the orbital process of the palatine bone and the orbital surface of the maxilla." [http://medical-dictionary.thefreedictionary.com/palatomaxillary+suture] +subset: human_subset +subset: mouse_subset synonym: "palatomaxillary suture of skull" EXACT [FMA:52964] xref: FMA:52964 xref: Wikipedia:Palatomaxillary_suture @@ -357051,6 +375535,8 @@ property_value: external_definition "The palatomaxillary suture is a suture sepa id: UBERON:0035124 name: palatoethmoidal suture def: "A line of junction of the orbital process of the palatine bone and the orbital plate of the ethmoid." [http://medical-dictionary.thefreedictionary.com/palatoethmoidal+suture] +subset: human_subset +subset: mouse_subset synonym: "palato-ethmoidal suture" EXACT [FMA:52965] synonym: "palatoethmoidal suture of skull" EXACT [FMA:52965] synonym: "sutura palatoethmoidalis" EXACT OMO:0003011 [FMA:52965, FMA:TA] @@ -357066,6 +375552,8 @@ relationship: connects UBERON:0001682 ! palatine bone id: UBERON:0035126 name: transverse palatine suture def: "The line of junction between the processes of the maxilla and the horizontal parts of the palatine bones that form the hard palate." [http://medical-dictionary.thefreedictionary.com/transverse+palatine+suture] +subset: human_subset +subset: mouse_subset synonym: "transverse palatine suture of skull" EXACT [FMA:52971] xref: FMA:52971 is_a: UBERON:0010313 ! neural crest-derived structure @@ -357081,6 +375569,8 @@ relationship: part_of UBERON:0003216 ! hard palate id: UBERON:0035127 name: suture of hard palate def: "Any of the sutures of the hard palate." [http://www.merriam-webster.com/medical/palatine%20suture] +subset: human_subset +subset: mouse_subset synonym: "palatine suture" EXACT [http://www.merriam-webster.com/medical/palatine%20suture] is_a: UBERON:0003685 ! cranial suture is_a: UBERON:0010313 ! neural crest-derived structure @@ -357091,6 +375581,8 @@ relationship: part_of UBERON:0003216 ! hard palate [Term] id: UBERON:0035128 name: manus cartilage element +subset: human_subset +subset: mouse_subset synonym: "hand cartilage condensation" EXACT [EMAPA:32631] xref: EMAPA:32631 is_a: UBERON:0010883 ! forelimb cartilage element @@ -357105,6 +375597,8 @@ relationship: part_of UBERON:0002398 ! manus [Term] id: UBERON:0035129 name: pes cartilage element +subset: human_subset +subset: mouse_subset synonym: "foot cartilage condensation" EXACT [EMAPA:32657] xref: EMAPA:32657 is_a: UBERON:0010885 ! hindlimb cartilage element @@ -357119,6 +375613,8 @@ relationship: part_of UBERON:0002387 ! pes [Term] id: UBERON:0035130 name: auditory ossicle endochondral element +subset: human_subset +subset: mouse_subset synonym: "auditory skeletal element" EXACT [] synonym: "ear ossicle element" RELATED [] synonym: "ear ossicles element" RELATED OMO:0003004 [] @@ -357138,6 +375634,8 @@ relationship: part_of UBERON:0008895 {source="PMID:11523816"} ! splanchnocranium [Term] id: UBERON:0035131 name: auditory ossicle cartilage element +subset: human_subset +subset: mouse_subset synonym: "ossicle cartilage condensation" EXACT [EMAPA:35979] xref: EMAPA:35979 is_a: UBERON:0011004 ! pharyngeal arch cartilage @@ -357149,6 +375647,8 @@ relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0035132 name: auditory ossicle pre-cartilage element +subset: human_subset +subset: mouse_subset synonym: "ossicle pre-cartilage condensation" EXACT [EMAPA:35982] xref: EMAPA:35982 is_a: UBERON:0035130 ! auditory ossicle endochondral element @@ -357160,6 +375660,8 @@ relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation id: UBERON:0035133 name: longitudinal arch of pes def: "A curved region of the skeleton of the pes (foot) formed by the tarsal and metatarsal bones." [Wikipedia:Arches_of_the_foot#Longitudinal_arches] +subset: human_subset +subset: mouse_subset synonym: "longitudinal arch of foot" EXACT [FMA:75030] xref: FMA:75030 xref: Wikipedia:Arches_of_the_foot @@ -357177,6 +375679,8 @@ id: UBERON:0035139 name: anterior nasal spine of maxilla def: "A pointed projection at the front extremity of the intermaxillary suture." [http://medical-dictionary.thefreedictionary.com/anterior+nasal+spine] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "anterior nasal spine" RELATED [] synonym: "spina nasalis anterior corporis maxillae" EXACT OMO:0003011 [FMA:75770, FMA:TA] xref: FMA:75770 @@ -357189,6 +375693,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0035142 name: preputial space of male +subset: human_subset +subset: mouse_subset xref: EMAPA:36342 is_a: UBERON:0035144 ! preputial space intersection_of: UBERON:0035144 ! preputial space @@ -357199,6 +375705,8 @@ relationship: part_of UBERON:0001332 {source="EMAPA"} ! prepuce of penis [Term] id: UBERON:0035143 name: preputial space of female +subset: human_subset +subset: mouse_subset is_a: UBERON:0035144 ! preputial space intersection_of: UBERON:0035144 ! preputial space intersection_of: part_of UBERON:0002411 ! clitoris @@ -357209,6 +375717,8 @@ relationship: part_of UBERON:0005299 ! prepuce of clitoris id: UBERON:0035144 name: preputial space def: "Space between the prepuce and glans penis or clitoris." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "preputial cavity" EXACT [FMA:28606] xref: FMA:28606 is_a: UBERON:0000464 ! anatomical space @@ -357217,6 +375727,8 @@ relationship: part_of UBERON:0011374 ! prepuce [Term] id: UBERON:0035145 name: nucleus sacci vasculosi +subset: human_subset +subset: mouse_subset is_a: UBERON:0000125 ! neural nucleus [Term] @@ -357265,6 +375777,8 @@ property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0035149 name: gingival epithelial attachment +subset: human_subset +subset: mouse_subset xref: SCTID:85036004 is_a: UBERON:0007651 ! anatomical junction relationship: located_in UBERON:0008805 ! gingival groove @@ -357275,6 +375789,8 @@ id: UBERON:0035150 name: superior cerebral vein def: "The Superior Cerebral Veins, eight to twelve in number, drain the superior, lateral, and medial surfaces of the hemispheres, and are mainly lodged in the sulci between the gyri, but some run across the gyri. They open into the superior sagittal sinus; the anterior veins runs nearly at right angles to the sinus; the posterior and larger veins are directed obliquely forward and open into the sinus in a direction more or less opposed to the current of the blood contained within it." [Wikipedia:Superior_cerebral_veins] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "superior cerebral vein" RELATED [Wikipedia:Superior_cerebral_veins] xref: FMA:50978 xref: SCTID:244393005 @@ -357286,6 +375802,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0035151 name: dorsal cerebral vein +subset: human_subset +subset: mouse_subset xref: EMAPA:37142 {source="MA:th"} xref: MA:0002103 is_a: UBERON:0001663 ! cerebral vein @@ -357295,6 +375813,8 @@ id: UBERON:0035152 name: internal cerebral vein def: "The internal cerebral veins (veins of Galen; deep cerebral veins) drain the deep parts of the hemisphere and are two in number; each is formed near the interventricular foramen by the union of the terminal and choroid veins. They run backward parallel with one another, between the layers of the tela chorioidea of the third ventricle, and beneath the splenium of the corpus callosum, where they unite to form a short trunk, the great cerebral vein; just before their union each receives the corresponding basal vein." [Wikipedia:Internal_cerebral_veins] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "internal cerebral vein" RELATED [Wikipedia:Internal_cerebral_veins] xref: FMA:51003 xref: NCIT:C32838 @@ -357309,6 +375829,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0035153 name: dorsolateral prefrontal cortex layer 1 def: "Most superficial layer of the Dorsolateral Prefrontal Cortex (DLPFC)." [NLX:156731] +subset: human_subset +subset: mouse_subset synonym: "dlPF1" RELATED OMO:0003000 [] synonym: "dlPFC1" RELATED OMO:0003000 [] synonym: "layer I of dorsolateral prefrontal cortex" EXACT [] @@ -357322,6 +375844,8 @@ relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex id: UBERON:0035154 name: dorsolateral prefrontal cortex layer 2 def: "Layer 2 of neocortex lying just deep to superficial layer 1 of dorsolateral prefrontal cortex." [NLX:156732] +subset: human_subset +subset: mouse_subset synonym: "dlPF2" RELATED OMO:0003000 [] synonym: "dlPFC2" RELATED OMO:0003000 [] synonym: "layer II of dorsolateral prefrontal cortex" EXACT [PBA:12986] @@ -357336,6 +375860,8 @@ relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex id: UBERON:0035155 name: dorsolateral prefrontal cortex layer 3 def: "Layer 3 of dorsolateral prefrontal cortex lying deep to the layer 2 and cytoarchitectonically defined by numerous small pyramidal neurons." [NLX:156733] +subset: human_subset +subset: mouse_subset synonym: "dlPF3" RELATED OMO:0003000 [] synonym: "dlPFC3" RELATED OMO:0003000 [] synonym: "layer III of dorsolateral prefrontal cortex" EXACT [PBA:12987] @@ -357350,6 +375876,8 @@ relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex id: UBERON:0035156 name: dorsolateral prefrontal cortex layer 4 def: "Layer 4 of dorsolateral prefrontal cortex lying deep to the external pyramidal layer and cytoarchitectonically defined by presence of small cells." [NLX:156734] +subset: human_subset +subset: mouse_subset synonym: "dlPF4" RELATED OMO:0003000 [] synonym: "dlPFC4" RELATED OMO:0003000 [] synonym: "granular layer IV of dorsolateral prefrontal cortex" EXACT [PBA:12988] @@ -357364,6 +375892,8 @@ relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex id: UBERON:0035157 name: dorsolateral prefrontal cortex layer 5 def: "Layer 5 of dorsolateral prefrontal cortex lying deep to the internal granule cell layer 4 and cytoarchitectonically divisible into layers 5a and 5b. Layer 5a is characterized by the predominance of large pyramidal cell bodies. Layer 5b is pale in comparison." [NLX:156735] +subset: human_subset +subset: mouse_subset synonym: "dlPF5" RELATED OMO:0003000 [] synonym: "dlPFC5" RELATED OMO:0003000 [] synonym: "layer V of dorsolateral prefrontal cortex" EXACT [PBA:12989] @@ -357378,6 +375908,8 @@ relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex id: UBERON:0035158 name: dorsolateral prefrontal cortex layer 6 def: "Innermost layer of dorsolateral prefrontal cortex lying deep to the internal pyramidal cell layer 5. It is cytoarchitectonically defined in the DLPFC by cells of varying sizes. DLPFC layer 6a is characterized by more neurons and layer 6b has comparatively more glia." [NLX:156736] +subset: human_subset +subset: mouse_subset synonym: "dlPF6" RELATED OMO:0003000 [] synonym: "dlPFC6" RELATED OMO:0003000 [] synonym: "layer VI of dorsolateral prefrontal cortex" EXACT [PBA:12990] @@ -357392,6 +375924,8 @@ relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex id: UBERON:0035159 name: entire surface of organism def: "Anatomical surface, which is the external surface of the whole body. Examples: There is only one body surface." [FMA:61695] +subset: human_subset +subset: mouse_subset synonym: "surface of body" EXACT [FMA:61695] xref: FMA:61695 xref: NCIT:C29667 @@ -357406,6 +375940,8 @@ relationship: surrounds UBERON:0000468 ! multicellular organism id: UBERON:0035162 name: infraclavicular lymph node def: "A lymph node located in the area below the clavicle." [ncithesaurus:Infraclavicular_Lymph_Node] +subset: human_subset +subset: mouse_subset synonym: "deltopectoral lymph node" EXACT [FMA:14193] synonym: "deltopectoral node" EXACT [FMA:14193] synonym: "infraclavicular node" EXACT [FMA:14193] @@ -357421,6 +375957,8 @@ is_a: UBERON:0015917 {source="FMA"} ! superficial lymph node id: UBERON:0035165 name: posterior surface of prostate def: "The flattened aspect of the prostate with a slight furrow facing the rectum and anus." [ncithesaurus:Posterior_Surface_of_the_Prostate] +subset: human_subset +subset: mouse_subset synonym: "facies posterior (prostatae)" EXACT [FMA:19592] synonym: "facies posterior prostatae" EXACT OMO:0003011 [FMA:19592, FMA:TA] synonym: "posterior surface of prostate gland" EXACT [FMA:19592] @@ -357440,6 +375978,8 @@ relationship: in_posterior_side_of UBERON:0002367 ! prostate gland id: UBERON:0035168 name: infraclavicular region def: "The region below the clavicle." [ncithesaurus:Infraclavicular_Region] +subset: human_subset +subset: mouse_subset synonym: "infraclavicular part of chest" EXACT [FMA:61479] synonym: "infraclavicular region" EXACT [FMA:61479] xref: FMA:61479 @@ -357452,6 +375992,8 @@ relationship: part_of UBERON:0001443 ! chest [Term] id: UBERON:0035171 name: obturator lymph node +subset: human_subset +subset: mouse_subset synonym: "obturator node" EXACT [FMA:16656] xref: FMA:16656 xref: NCIT:C88141 @@ -357464,6 +376006,8 @@ is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node id: UBERON:0035174 name: right ear def: "The organ of hearing located on the right side of the head." [ncithesaurus:Right_Ear] +subset: human_subset +subset: mouse_subset xref: FMA:53641 xref: NCIT:C81285 xref: SCTID:368570004 @@ -357478,6 +376022,8 @@ relationship: in_right_side_of UBERON:0000033 ! head id: UBERON:0035177 name: abdominal part of esophagus def: "Clinical esophageal segment composed of smooth muscle. It corresponds to the inferior part of the lower third topographic segment of the esophagus." [ncithesaurus:Abdominal_Esophagus] +subset: human_subset +subset: mouse_subset synonym: "abdominal esophagus" EXACT [FMA:9397] synonym: "abdominal part of oesophagus" EXACT [FMA:9397] synonym: "pars abdominalis (oesophagus)" EXACT [FMA:9397] @@ -357496,6 +376042,8 @@ id: UBERON:0035180 name: sigmoid artery def: "The sigmoid arteries, two or three in number, run obliquely downward and to the left behind the peritoneum and in front of the Psoas major, ureter, and internal spermatic vessels. Their branches supply the lower part of the descending colon, the iliac colon, and the sigmoid or pelvic colon; anastomosing above with the left colic, and below with the superior hemorrhoidal artery." [Wikipedia:Sigmoid_arteries] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "inferior left colic artery" EXACT [FMA:14830] xref: FMA:14830 xref: NCIT:C33549 @@ -357514,6 +376062,8 @@ id: UBERON:0035183 name: calcarine artery def: "An artery that branches from the medial occipital artery that aligns with the calcarine sulcus." [ncithesaurus:Calcarine_Artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "calcarine branch of medial occipital artery" EXACT [FMA:50655] synonym: "ramus calcarinus (arteria occipitalis medialis)" EXACT OMO:0003011 [FMA:50655, FMA:TA] xref: FMA:50655 @@ -357528,6 +376078,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0035186 name: valve of foramen ovale +subset: human_subset +subset: mouse_subset synonym: "foramen ovale valve" EXACT [FMA:75348] xref: FMA:75348 xref: NCIT:C34326 @@ -357540,6 +376092,8 @@ relationship: part_of UBERON:0004754 ! foramen ovale of heart id: UBERON:0035195 name: plantar metatarsal artery def: "The plantar metatarsal arteries (digital branches) are four in number, and run forward between the metatarsal bones and in contact with the Interossei. Each divides into a pair of plantar digital arteries which supply the adjacent sides of the toes. Near their points of division each sends upward an anterior perforating branch to join the corresponding dorsal metatarsal artery. The first plantar metatarsal artery (arteria princeps hallucis) springs from the junction between the lateral plantar and deep plantar arteries and sends a digital branch to the medial side of the first toe. The digital branch for the lateral side of the fifth toe arise from the lateral plantar artery near the base of the fifth metatarsal bone." [Wikipedia:Plantar_metatarsal_arteries] +subset: human_subset +subset: mouse_subset synonym: "plantar metatarsal branch of plantar arch" EXACT [FMA:43956] xref: FMA:43956 xref: NCIT:C52743 @@ -357554,6 +376108,8 @@ relationship: part_of UBERON:0001538 {source="FMA"} ! posterior tibial artery id: UBERON:0035198 name: superficial lymphatic vessel def: "The tubules that carry lymph throughout the body that are just beneath the surface of the skin." [ncithesaurus:Superficial_Lymphatic_Vessel] +subset: human_subset +subset: mouse_subset synonym: "superficial lymph vessel" EXACT [FMA:52011] xref: FMA:52011 xref: NCIT:C33663 @@ -357568,6 +376124,8 @@ relationship: part_of UBERON:0035549 ! vasculature of integument id: UBERON:0035201 name: gastrocolic ligament def: "A major portion of the greater omentum between the stomach and the transverse colon." [ncithesaurus:Gastrocolic_Ligament] +subset: human_subset +subset: mouse_subset xref: FMA:16552 xref: NCIT:C32667 xref: SCTID:260539007 @@ -357584,6 +376142,8 @@ relationship: part_of UBERON:0005448 {source="FMA"} ! greater omentum id: UBERON:0035204 name: occipital lymph node def: "A lymph node located in the back of the head adjacent to the trapezius muscle." [ncithesaurus:Occipital_Lymph_Node] +subset: human_subset +subset: mouse_subset synonym: "occipital node" EXACT [FMA:61214] xref: FMA:61214 xref: NCIT:C98188 @@ -357598,6 +376158,8 @@ relationship: part_of UBERON:0000033 ! head id: UBERON:0035207 name: deep fibular nerve def: "A branch of the common peroneal nerve. It innervates the ankle and toes." [ncithesaurus:Deep_Peroneal_Nerve] +subset: human_subset +subset: mouse_subset synonym: "deep peroneal nerve" EXACT [FMA:44771] xref: FMA:44771 xref: NCIT:C92602 @@ -357619,6 +376181,8 @@ relationship: part_of UBERON:0001324 ! common fibular nerve id: UBERON:0035210 name: paracolic gutter def: "The paracolic gutters (paracolic sulci, paracolic recesses) are spaces between the colon and the abdominal wall. There are two paracolic gutters: The right lateral paracolic gutter. The left lateral paracolic gutter. These gutters are clinically important because they allow a passage for infectious fluids from different compartments of the abdomen. For example; fluid from an infected appendix can track up the right paracolic gutter to the hepatorenal recess." [Wikipedia:Paracolic_gutters] +subset: human_subset +subset: mouse_subset synonym: "paracolic sulcus" EXACT [FMA:14719] xref: FMA:14719 xref: NCIT:C89787 @@ -357631,6 +376195,8 @@ is_a: UBERON:0000093 ! sulcus id: UBERON:0035213 name: basal zone of heart def: "The superior portion of the heart located opposite to the apical portion. It is formed mainly by the left atrium." [ncithesaurus:Base_of_the_Heart] +subset: human_subset +subset: mouse_subset synonym: "anatomical base of heart" EXACT [FMA:223286] synonym: "base of heart" EXACT [FMA:223286] synonym: "basis cordis" EXACT OMO:0003011 [FMA:223286, FMA:TA] @@ -357648,6 +376214,8 @@ property_value: external_definition "Zone of heart which has as its parts the le id: UBERON:0035216 name: thoracic part of esophagus def: "Zone of esophagus located in the thorax." [FMA:9396] +subset: human_subset +subset: mouse_subset synonym: "pars thoracica (oesophagus)" EXACT OMO:0003011 [FMA:9396, FMA:TA] synonym: "pars thoracica oesophageae" EXACT OMO:0003011 [FMA:9396, FMA:TA] synonym: "thoracic esophagus" EXACT [FMA:9396] @@ -357663,6 +376231,8 @@ relationship: part_of UBERON:0001043 {source="FMA"} ! esophagus id: UBERON:0035219 name: parasternal lymph node def: "Any of the lymph nodes of the breast located under the ribcage, near the sternum." [ncithesaurus:Internal_Mammary_Lymph_Node] +subset: human_subset +subset: mouse_subset synonym: "internal mammary lymph node" EXACT [FMA:5849] synonym: "nodus parasternale" EXACT [FMA:5849] synonym: "parasternal node" EXACT [FMA:5849] @@ -357677,6 +376247,8 @@ is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node id: UBERON:0035222 name: posterior parietal artery subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:50488 xref: NCIT:C33372 xref: SCTID:44894007 @@ -357691,6 +376263,8 @@ id: UBERON:0035225 name: anterior temporal artery def: "A branch of the middle cerebral artery that supplies blood to the anterior part of the temporal lobe." [ncithesaurus:Anterior_Temporal_Artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:50382 xref: NCIT:C32113 xref: SCTID:44310009 @@ -357705,6 +376279,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0035228 name: tonsillar fossa def: "Between the plica triangularis and the surface of the palatine tonsils is a space known as the tonsillar fossa (or tonsillar sinus); in many cases, however, this sinus is obliterated by its walls becoming adherent." [Wikipedia:Tonsillar_fossa] +subset: human_subset +subset: mouse_subset synonym: "tonsillar bed" EXACT [FMA:55041] synonym: "tonsillar sinus" EXACT [FMA:55041] xref: FMA:55041 @@ -357720,6 +376296,8 @@ id: UBERON:0035231 name: superficial middle cerebral vein def: "A vein that runs along the fissure of Sylvius to the cavernous sinus on the lateral surface of the brain and connects to the superior sagittal and transverse sinuses." [ncithesaurus:Superficial_Middle_Cerebral_Vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "Sylvian vein" EXACT [FMA:50983] synonym: "vein of Labbe" EXACT [FMA:50983] xref: FMA:50983 @@ -357736,6 +376314,8 @@ id: UBERON:0035234 name: medial circumflex femoral vein def: "A circumflex femoral vein that accompanies the medial circumflex femoral artery." [ncithesaurus:Medial_Femoral_Vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:44325 xref: NCIT:C52688 xref: SCTID:35235007 @@ -357748,6 +376328,8 @@ relationship: tributary_of UBERON:0001361 ! femoral vein [Term] id: UBERON:0035237 name: branch of internal carotid artery +subset: human_subset +subset: mouse_subset synonym: "internal carotid arterial subdivision" EXACT [FMA:70506] synonym: "subdivision of internal carotid artery" EXACT [FMA:70506] xref: FMA:70506 @@ -357763,6 +376345,8 @@ relationship: part_of RO:0002577 ! system [Term] id: UBERON:0035240 name: posterior wall of oropharynx +subset: human_subset +subset: mouse_subset xref: FMA:55032 xref: NCIT:C12240 xref: SCTID:276960004 @@ -357779,6 +376363,8 @@ relationship: part_of UBERON:0001729 ! oropharynx id: UBERON:0035243 name: anal sinus def: "Furrows, with pouchlike recesses at the lower end, separating the rectal columns." [ncithesaurus:Anal_Sinus] +subset: human_subset +subset: mouse_subset synonym: "anal crypt" EXACT [FMA:15717] xref: FMA:15717 xref: NCIT:C32070 @@ -357791,6 +376377,8 @@ relationship: part_of UBERON:0000159 ! anal canal [Term] id: UBERON:0035246 name: posterior longitudinal ligament +subset: human_subset +subset: mouse_subset xref: FMA:31894 xref: NCIT:C33365 xref: SCTID:244603005 @@ -357803,6 +376391,8 @@ id: UBERON:0035249 name: posterior external jugular vein def: "A vein that drains the superficial muscles and integument of the upper back portion of the neck into the external jugular vein." [ncithesaurus:Posterior_External_Jugular_Vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:14318 xref: NCIT:C33360 xref: SCTID:59579009 @@ -357818,6 +376408,8 @@ id: UBERON:0035252 name: left subcostal vein def: "A vein that extends along the bottom of the twelfth rib on the left side of the body." [ncithesaurus:Left_Subcostal_Vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "vena subcostalis sinistra" EXACT [FMA:4951] xref: FMA:4951 xref: NCIT:C53125 @@ -357836,6 +376428,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0035258 name: mons pubis def: "A structure composed of adipose tissue lying above the pubic bone of adult women, anterior to the symphysis pubis. The mons pubis forms the anterior portion of the vulva, and limits the perineal region proximally and anteriorly." [Wikipedia:Mons_pubis] +subset: human_subset +subset: mouse_subset synonym: "mons" BROAD [Wikipedia:Mons_pubis] synonym: "mons veneris" EXACT OMO:0003011 [Wikipedia:Mons_pubis] synonym: "public mound" EXACT [Wikipedia:Mons_pubis] @@ -357854,6 +376448,8 @@ property_value: taxon_notes "In humans, the mons pubis divides into the labia ma id: UBERON:0035261 name: posterior temporal artery subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:50458 xref: NCIT:C33384 xref: SCTID:23830002 @@ -357868,6 +376464,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0035267 name: neck of gallbladder def: "The narrowest portion of the gallbladder and distal to the cystic duct." [ncithesaurus:Gallbladder_Neck] +subset: human_subset +subset: mouse_subset synonym: "cervix of gallbladder" EXACT [FMA:14538] synonym: "gallbladder neck" EXACT [FMA:14538] xref: FMA:14538 @@ -357884,6 +376482,8 @@ relationship: part_of UBERON:0002110 ! gallbladder [Term] id: UBERON:0035270 name: roof of nasopharynx +subset: human_subset +subset: mouse_subset synonym: "nasopharynx roof" EXACT [FMA:54906] synonym: "pharyngeal fornix" EXACT [FMA:54906] synonym: "roof of nasal part of pharynx" EXACT [FMA:54906] @@ -357903,6 +376503,8 @@ id: UBERON:0035273 name: superior thoracic artery def: "The superior thoracic artery (highest thoracic artery) is a small vessel normally arising from the first division of the axillary artery, but may arise from the thoracoacromial artery, itself a branch of the second division of the axillary artery. Running forward and medialward along the upper border of the pectoralis minor, the superior thoracic artery passes between it and the pectoralis major to the side of the chest. It supplies branches to the first and second intercostal spaces as well as to the superior portion of serratus anterior. It anastomoses with the internal mammary and intercostal arteries." [Wikipedia:Superior_thoracic_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:22668 xref: NCIT:C33701 xref: SCTID:198713000 @@ -357917,6 +376519,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0035276 name: epigastrium def: "The upper central region of the abdomen between the costal margins and the subcostal plane." [ncithesaurus:Epigastric_Region] +subset: human_subset +subset: mouse_subset synonym: "epigastric fossa" EXACT [FMA:20389] synonym: "epigastric part of abdomen" EXACT [FMA:20389] synonym: "epigastric region" EXACT [FMA:20389] @@ -357933,6 +376537,8 @@ id: UBERON:0035279 name: supraclavicular lymph node def: "A lymph node which is located above the clavicle." [ncithesaurus:Supraclavicular_Lymph_Node] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "nodus lymphaticus supraclavicularis axillae" EXACT OMO:0003011 [FMA:14192, FMA:TA] synonym: "supraclavicular node" EXACT [FMA:14192] xref: FMA:14192 @@ -357946,6 +376552,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0035286 name: lateral wall of oropharynx +subset: human_subset +subset: mouse_subset xref: FMA:55008 xref: NCIT:C12239 xref: SCTID:362125007 @@ -357963,6 +376571,8 @@ relationship: part_of UBERON:0001729 ! oropharynx id: UBERON:0035289 name: axillary tail of breast def: "An extension of the tissue of the breast which extends into the axilla." [Wikipedia:Tail_of_Spence] +subset: human_subset +subset: mouse_subset synonym: "axillary process" EXACT [FMA:58072] synonym: "axillary tail" EXACT [FMA:58072] synonym: "axillary tail of Spence" EXACT [FMA:58072] @@ -357979,6 +376589,8 @@ relationship: part_of UBERON:0000310 {source="ncithesaurus"} ! breast [Term] id: UBERON:0035292 name: branch of posterior tibial artery +subset: human_subset +subset: mouse_subset synonym: "posterior tibial arterial branch" EXACT [FMA:69784] xref: FMA:69784 xref: NCIT:C33385 @@ -357994,6 +376606,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0035295 name: left ear def: "The organ of hearing located on the left side of the head[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Left_Ear] +subset: human_subset +subset: mouse_subset xref: FMA:53642 xref: NCIT:C81259 xref: SCTID:368592000 @@ -358008,6 +376622,8 @@ relationship: in_left_side_of UBERON:0000033 ! head id: UBERON:0035298 name: tuberculum sellae def: "An elevated zone of the sella turcica behind the chiasmatic groove[WP,modified]." [Wikipedia:Tuberculum_sellae] +subset: human_subset +subset: mouse_subset xref: FMA:54719 xref: NCIT:C45911 xref: SCTID:139784008 @@ -358020,6 +376636,8 @@ relationship: part_of UBERON:0003689 {source="FMA"} ! sella turcica [Term] id: UBERON:0035304 name: branch of ulnar artery +subset: human_subset +subset: mouse_subset synonym: "ulnar arterial branch" EXACT [FMA:22799] xref: FMA:22799 xref: NCIT:C33826 @@ -358034,6 +376652,8 @@ relationship: part_of RO:0002577 ! system [Term] id: UBERON:0035307 name: branch of vertebral artery +subset: human_subset +subset: mouse_subset synonym: "vertebral arterial branch" EXACT [FMA:76259] xref: FMA:76259 xref: NCIT:C33867 @@ -358049,6 +376669,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0035310 name: inferolateral surface of prostate def: "The aspect of the prostate facing the pelvic diaphragm and pubis." [ncithesaurus:Inferolateral_Surface_of_the_Prostate] +subset: human_subset +subset: mouse_subset synonym: "facies inferolaterales (prostatae)" EXACT [FMA:19596] synonym: "facies inferolateralis prostatae" EXACT OMO:0003011 [FMA:19596, FMA:TA] synonym: "inferolateral surface of prostate gland" EXACT [FMA:19596] @@ -358062,6 +376684,8 @@ relationship: part_of UBERON:0002367 ! prostate gland [Term] id: UBERON:0035313 name: posterior wall of laryngopharynx +subset: human_subset +subset: mouse_subset synonym: "posterior wall of hypopharynx" EXACT [FMA:55063] xref: FMA:55063 xref: NCIT:C12249 @@ -358078,6 +376702,8 @@ relationship: part_of UBERON:0001051 ! hypopharynx id: UBERON:0035316 name: prostatic capsule def: "The membrane the surrounds the prostate gland." [ncithesaurus:Capsule_of_the_Prostate] +subset: human_subset +subset: mouse_subset synonym: "capsule of prostate" EXACT [FMA:19583] synonym: "capsule of prostate gland" EXACT [FMA:19583] xref: FMA:19583 @@ -358095,6 +376721,8 @@ relationship: part_of UBERON:0002367 ! prostate gland id: UBERON:0035319 name: anterior median fissure of spinal cord def: "A fissure in the midline of the anterior surface of the spinal cord." [ncithesaurus:Anterior_Median_Fissure_of_Spinal_Cord] +subset: human_subset +subset: mouse_subset synonym: "fissura mediana anterior medullae spinalis" EXACT OMO:0003011 [FMA:83735, FMA:TA] synonym: "ventral median fissure of spinal cord" EXACT [FMA:83735] xref: FMA:83735 @@ -358108,6 +376736,8 @@ is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure id: UBERON:0035322 name: right common iliac artery subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "trunk of right common iliac arterial tree" EXACT [FMA:14765] xref: FMA:14765 xref: NCIT:C33474 @@ -358124,6 +376754,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0035328 name: upper outer quadrant of breast def: "The quarter of the breast which is superior and lateral." [ncithesaurus:Upper-outer_Quadrant_of_the_Breast] +subset: human_subset +subset: mouse_subset synonym: "upper outer quadrant of female breast" EXACT [FMA:61380] xref: FMA:61380 xref: NCIT:C12303 @@ -358141,6 +376773,8 @@ relationship: in_outermost_side_of UBERON:0000310 ! breast id: UBERON:0035331 name: base of prostate def: "The uppermost part of the prostate gland adjacent to the bladder wall." [ncithesaurus:Base_of_the_Prostate] +subset: human_subset +subset: mouse_subset synonym: "base of prostate gland" EXACT [FMA:19595] synonym: "prostatic base" EXACT [FMA:19595] xref: FMA:19595 @@ -358157,6 +376791,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/p id: UBERON:0035338 name: sphenoparietal sinus def: "The cavernous sinus receives the superior ophthalmic vein through the superior orbital fissure, some of the cerebral veins, and also the small sphenoparietal sinus, which courses along the under surface of the small wing of the sphenoid." [Wikipedia:Sphenoparietal_sinus] +subset: human_subset +subset: mouse_subset xref: FMA:50776 xref: NCIT:C33585 xref: SCTID:279266001 @@ -358168,6 +376804,8 @@ is_a: UBERON:0017635 {source="FMA"} ! paired venous dural sinus id: UBERON:0035341 name: posterior lobe of prostate def: "The prostate gland lobe that is located on the posterior side of the organ." [ncithesaurus:Posterior_Lobe_of_the_Prostate] +subset: human_subset +subset: mouse_subset synonym: "posterior lobe of prostate gland" EXACT [FMA:19575] synonym: "posterior peripheral zone" EXACT [FMA:19575] xref: FMA:19575 @@ -358189,6 +376827,8 @@ consider: UMLS:C0039062 [Term] id: UBERON:0035350 name: branch of middle cerebral artery +subset: human_subset +subset: mouse_subset synonym: "middle cerebral arterial branch" EXACT [FMA:50081] xref: FMA:50081 xref: NCIT:C33114 @@ -358203,6 +376843,8 @@ relationship: part_of RO:0002577 ! system [Term] id: UBERON:0035359 name: branch of brachial artery +subset: human_subset +subset: mouse_subset synonym: "brachial arterial branch" EXACT [FMA:22693] xref: FMA:22693 xref: NCIT:C32227 @@ -358218,6 +376860,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0035365 name: lower outer quadrant of breast def: "The quarter of the breast which is inferior and lateral." [ncithesaurus:Lower-outer_Quadrant_of_the_Breast] +subset: human_subset +subset: mouse_subset synonym: "lower outer quadrant of female breast" EXACT [FMA:61376] xref: FMA:61376 xref: NCIT:C12304 @@ -358235,6 +376879,8 @@ relationship: in_posterior_side_of UBERON:0000310 ! breast id: UBERON:0035368 name: anterior surface of kidney def: "The aspect of the kidney facing the abdominal cavity." [ncithesaurus:Anterior_Surface_of_the_Kidney] +subset: human_subset +subset: mouse_subset synonym: "facies anterior (Ren)" EXACT [FMA:15589] synonym: "facies anterior renis" EXACT OMO:0003011 [FMA:15589, FMA:TA] xref: FMA:15589 @@ -358249,6 +376895,8 @@ relationship: part_of UBERON:0002113 {source="ncithesaurus"} ! kidney id: UBERON:0035371 name: retroperitoneal lymph node def: "A lymph node located in the retroperitoneal space." [ncithesaurus:Retroperitoneal_Lymph_Node] +subset: human_subset +subset: mouse_subset synonym: "retroperitoneal node" EXACT [FMA:16694] xref: FMA:16694 xref: NCIT:C98189 @@ -358265,6 +376913,8 @@ id: UBERON:0035374 name: small cardiac vein def: "A vein running parallel to the right coronary artery in the coronary sulcus that drains into the right extremity of the coronary sinus." [ncithesaurus:Small_Cardiac_Vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "right cardiac vein" EXACT [FMA:4714] xref: FMA:4714 xref: NCIT:C12881 @@ -358281,6 +376931,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0035377 name: transverse fold of rectum def: "One of the semi-lunar transverse folds of the rectal wall that protrude into the anal canal." [Wikipedia:Houston_valve] +subset: human_subset +subset: mouse_subset synonym: "horizontal fold of rectum" EXACT [FMA:15722] synonym: "transverse rectal fold" EXACT [FMA:15722] xref: FMA:15722 @@ -358296,6 +376948,8 @@ property_value: function_notes "Their use seems to be to support the weight of f id: UBERON:0035380 name: branch of anterior cerebral artery def: "An arterial branch arising from the anterior cerebral artery. It includes the callosomarginal artery, frontopolar artery, medial orbitofrontal artery, pericallosal artery, and recurrent artery of Heubner." [ncithesaurus:Anterior_Cerebral_Artery_Branch] +subset: human_subset +subset: mouse_subset synonym: "anterior cerebral arterial branch" EXACT [FMA:50031] xref: FMA:50031 xref: NCIT:C32082 @@ -358311,6 +376965,8 @@ relationship: part_of RO:0002577 ! system [Term] id: UBERON:0035383 name: lateral wall of nasopharynx +subset: human_subset +subset: mouse_subset synonym: "lateral nasopharynx" EXACT [FMA:54908] xref: FMA:54908 xref: NCIT:C12244 @@ -358328,6 +376984,8 @@ relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0035386 name: space of Mall +subset: human_subset +subset: mouse_subset synonym: "mall space" EXACT [FMA:70118] xref: FMA:70118 xref: NCIT:C33580 @@ -358341,6 +376999,8 @@ id: UBERON:0035392 name: cystic vein def: "A blood vessel carrying deoxygenated blood from the gallbladder and the cystic duct into the right branch of the portal vein." [ncithesaurus:Cystic_Vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cholecystic vein" EXACT [FMA:15403] xref: FMA:15403 xref: NCIT:C32422 @@ -358359,6 +377019,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b [Term] id: UBERON:0035395 name: branch of left coronary artery +subset: human_subset +subset: mouse_subset synonym: "left coronary arterial branch" EXACT [FMA:66328] xref: FMA:66328 xref: NCIT:C32958 @@ -358373,6 +377035,8 @@ relationship: part_of RO:0002577 ! system [Term] id: UBERON:0035398 name: branch of external carotid artery +subset: human_subset +subset: mouse_subset synonym: "external carotid arterial subdivision" EXACT [FMA:70505] synonym: "subdivision of external carotid artery" EXACT [FMA:70505] xref: FMA:70505 @@ -358388,6 +377052,8 @@ relationship: part_of RO:0002577 ! system [Term] id: UBERON:0035401 name: posterior wall of nasopharynx +subset: human_subset +subset: mouse_subset synonym: "posterior nasopharynx" EXACT [FMA:54907] xref: FMA:54907 xref: NCIT:C12243 @@ -358405,6 +377071,8 @@ relationship: part_of UBERON:0001728 ! nasopharynx id: UBERON:0035403 name: hypophysial artery def: "An artery that supplies the pituitary gland." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0000007 ! pituitary gland @@ -358416,6 +377084,8 @@ id: UBERON:0035404 name: superior hypophysial artery def: "The superior hypophysial artery is an artery supplying the pars tuberalis,the infundibulum of the pituitary gland and the median eminence. It is a branch of the posterior communicating artery which branches from the internal carotid artery in the circle of Willis.." [Wikipedia:Superior_hypophysial_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "superior hypophyseal artery" EXACT [FMA:49849] xref: FMA:49849 xref: NCIT:C33678 @@ -358430,6 +377100,8 @@ relationship: supplies UBERON:0000007 ! pituitary gland [Term] id: UBERON:0035410 name: left inguinal part of abdomen +subset: human_subset +subset: mouse_subset synonym: "left iliac fossa viewed surgically" EXACT [FMA:24037] synonym: "left iliac region" EXACT [FMA:24037] synonym: "left inguinal region" EXACT [FMA:24037] @@ -358446,6 +377118,8 @@ relationship: part_of UBERON:0000916 ! abdomen id: UBERON:0035416 name: diaphragma sellae def: "The diaphragma sellae or sellar diaphragm is the circular fold of dura mater that almost completely roofs the fossa hypophyseos in the sphenoid bone of the skull. It retains the pituitary gland in the fossa hypophyseos, with only the infundibulum of the pituitary gland passing through it." [Wikipedia:Diaphragma_sellae] +subset: human_subset +subset: mouse_subset synonym: "sellar diaphragm" EXACT [FMA:78540] xref: FMA:78540 xref: NCIT:C32459 @@ -358460,6 +377134,8 @@ relationship: part_of UBERON:0010506 {source="ncithesaurus"} ! meningeal dura ma id: UBERON:0035419 name: anterior longitudinal ligament def: "A ligament running the length of the anterior surface of the spinal column and thereby interconnects all the vertebral bodies." [ncithesaurus:Anterior_Longitudinal_Ligament] +subset: human_subset +subset: mouse_subset xref: FMA:31893 xref: NCIT:C32095 xref: SCTID:244601007 @@ -358471,6 +377147,8 @@ id: UBERON:0035422 name: circumflex branch of left coronary artery def: "Branch of left coronary artery which runs perpendicular to the anterior interventricular branch of the left coronary artery on the left side of the interventricular sulcus and supplies the left side of the heart." [FMA:3895] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "circumflex coronary artery" EXACT [FMA:3895] synonym: "left circumflex branch of left coronary artery" EXACT [FMA:3895] synonym: "ramus circumflexus (arteria coronaria sinistra)" EXACT OMO:0003011 [FMA:3895, FMA:TA] @@ -358491,6 +377169,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0035425 name: falx cerebelli def: "A small triangular process of dura matter beginning at the internal occipital crest just beneath the tentorium and projecting forward." [ncithesaurus:Falx_Cerebelli] +subset: human_subset +subset: mouse_subset synonym: "cerebellar falx" EXACT [FMA:83974] xref: FMA:83974 xref: NCIT:C32584 @@ -358505,6 +377185,8 @@ relationship: part_of UBERON:0010506 {source="ncithesaurus"} ! meningeal dura ma [Term] id: UBERON:0035428 name: postcapillary venule +subset: human_subset +subset: mouse_subset xref: FMA:63191 xref: NCIT:C33345 xref: SCTID:6216007 @@ -358515,6 +377197,8 @@ is_a: UBERON:0001979 {source="FMA"} ! venule id: UBERON:0035431 name: mediastinal pleura def: "The parietal pleura that lines the mediastinum." [ncithesaurus:Mediastinal_Pleura] +subset: human_subset +subset: mouse_subset synonym: "mediastinal part of parietal pleura" EXACT [FMA:9736] synonym: "pars mediastinalis (pleurae)" EXACT [FMA:9736] synonym: "pars mediastinalis pleurae parietalis" EXACT OMO:0003011 [FMA:9736, FMA:TA] @@ -358533,6 +377217,8 @@ id: UBERON:0035435 name: right suprarenal vein def: "A vein that drains blood from the right adrenal gland into the inferior vena cava." [ncithesaurus:Right_Suprarenal_Vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "vena suprarenalis (adrenalis) dextra" EXACT [FMA:14343] xref: FMA:14343 xref: NCIT:C53131 @@ -358550,6 +377236,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0035438 name: mucoid tissue def: "Loose connective tissue, the intercellular matrix of which consists predominantly of mucoid ground substance. Examples: Mucoid tissue of umbilical cord, mucoid tissue of vitreous body, mucoid tissue of nucleus pulposus." [FMA:20111] +subset: human_subset +subset: mouse_subset synonym: "mucous connective tissue" EXACT [FMA:20111] synonym: "mucous tissue" EXACT [FMA:20111] xref: FMA:20111 @@ -358563,6 +377251,8 @@ property_value: external_ontology_notes "ncit restricts to umbilical cord" xsd:s id: UBERON:0035441 name: apex of prostate def: "The lowest part of the prostate gland adjacent to the superior fascia of the urogenital diaphragm." [ncithesaurus:Apex_of_the_Prostate] +subset: human_subset +subset: mouse_subset synonym: "apex of prostate gland" EXACT [FMA:19594] synonym: "prostatic apex" EXACT [FMA:19594] xref: FMA:19594 @@ -358576,6 +377266,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/p [Term] id: UBERON:0035444 name: triangular ligament of liver +subset: human_subset +subset: mouse_subset synonym: "triangular ligament" BROAD [FMA:15821] xref: FMA:15821 xref: SCTID:279968005 @@ -358591,6 +377283,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/l id: UBERON:0035445 name: urogenital diaphragm def: "Muscular components of the deep perineal pouch." [Wikipedia:Urogenital_diaphragm] +subset: human_subset +subset: mouse_subset xref: FMA:19734 xref: NCIT:C33810 xref: UMLS:C0230241 @@ -358604,6 +377298,8 @@ property_value: editor_note "consider obsoletion" xsd:string id: UBERON:0035450 name: cervical part of esophagus def: "Clinical esophageal segment composed of skeletal muscle. It corresponds to the superior part of the upper third topographic segment of the esophagus." [ncithesaurus:Cervical_Esophagus] +subset: human_subset +subset: mouse_subset synonym: "cervical esophagus" EXACT [FMA:9395] synonym: "cervical part of oesophagus" EXACT [FMA:9395] synonym: "pars cervicalis (oesophagus)" EXACT [FMA:9395] @@ -358619,6 +377315,8 @@ relationship: part_of UBERON:0001043 {source="FMA"} ! esophagus [Term] id: UBERON:0035453 name: laryngeal ventricle +subset: human_subset +subset: mouse_subset synonym: "ventricle of larynx" EXACT [FMA:64171] synonym: "ventricle of Morgagni" EXACT [FMA:64171] xref: FMA:64171 @@ -358634,6 +377332,8 @@ id: UBERON:0035462 name: anterior parietal artery def: "The artery that delivers blood to the anterior portion of the parietal lobe." [ncithesaurus:Anterior_Parietal_Artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:50485 xref: NCIT:C32101 xref: SCTID:78499006 @@ -358646,6 +377346,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0035465 name: endometrial cavity def: "A space inside the uterus lined by a layer of mucus membranes called the endometrium." [ncithesaurus:Endometrial_Cavity] +subset: human_subset +subset: mouse_subset synonym: "cavity of body of uterus" EXACT [FMA:18076] synonym: "endometrial cavity" EXACT [FMA:18076] synonym: "endometrial lumen" EXACT [] @@ -358668,6 +377370,8 @@ relationship: part_of UBERON:0013769 ! uterine lumen id: UBERON:0035468 name: costodiaphragmatic recess def: "The angled junction where the diaphragm meets the chest wall." [ncithesaurus:Costophrenic_Angle] +subset: human_subset +subset: mouse_subset synonym: "costophrenic angle" EXACT [FMA:11355] xref: FMA:11355 xref: NCIT:C32393 @@ -358680,6 +377384,8 @@ relationship: part_of UBERON:0001103 {source="ncithesaurus"} ! diaphragm [Term] id: UBERON:0035471 name: posterior surface of kidney +subset: human_subset +subset: mouse_subset synonym: "facies posterior (Ren)" EXACT [FMA:15590] synonym: "facies posterior renis" EXACT OMO:0003011 [FMA:15590, FMA:TA] xref: FMA:15590 @@ -358699,6 +377405,8 @@ id: UBERON:0035474 name: right subcostal vein def: "A vein that extends along the bottom of the twelfth rib on the right side of the body." [ncithesaurus:Right_Subcostal_Vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "vena subcostalis dextra" EXACT [FMA:4844] xref: FMA:4844 xref: NCIT:C53123 @@ -358717,6 +377425,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0035477 name: lower inner quadrant of breast def: "The quarter of the breast which is inferior and medial." [ncithesaurus:Lower-inner_Quadrant_of_the_Breast] +subset: human_subset +subset: mouse_subset synonym: "lower inner quadrant of female breast" EXACT [FMA:61377] xref: FMA:61377 xref: NCIT:C12302 @@ -358734,6 +377444,8 @@ relationship: in_posterior_side_of UBERON:0000310 ! breast id: UBERON:0035480 name: surface of prostate def: "The external portion of the prostate including the anterior, inferolateral, lateral and posterior surfaces." [ncithesaurus:Surface_of_the_Prostate] +subset: human_subset +subset: mouse_subset synonym: "prostatic surface" EXACT [FMA:19590] synonym: "surface of prostate gland" EXACT [FMA:19590] xref: FMA:19590 @@ -358751,6 +377463,8 @@ id: UBERON:0035483 name: left suprarenal vein def: "A vein that drains blood from the left adrenal gland into the left renal artery." [ncithesaurus:Left_Suprarenal_Vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:14349 xref: NCIT:C53138 xref: SCTID:85087001 @@ -358767,6 +377481,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0035489 name: branch of basilar artery +subset: human_subset +subset: mouse_subset synonym: "basilar arterial branch" EXACT [FMA:76269] xref: FMA:76269 xref: NCIT:C32195 @@ -358783,6 +377499,8 @@ id: UBERON:0035492 name: inferior hypophysial artery def: "The inferior hypophysial artery is an artery supplying the pituitary gland. It is a branch of the cavernous carotid artery (internal carotid artery)." [Wikipedia:Inferior_hypophysial_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "inferior hypophyseal artery" EXACT [FMA:49846] xref: FMA:49846 xref: NCIT:C32777 @@ -358799,6 +377517,8 @@ id: UBERON:0035495 name: hilum of lymph node def: "The concave side of the lymph node." [ncithesaurus:Lymph_Node_Hilum] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "hilum nodi lymphoidei" EXACT OMO:0003011 [FMA:62842, FMA:TA] synonym: "lymph node hilum" EXACT [FMA:62842] xref: FMA:62842 @@ -358815,6 +377535,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0035498 name: gastrophrenic ligament def: "The portion of the greater omentum that extends from the greater curvature of the stomach to the inferior surface of the diaphragm." [http://medical-dictionary.thefreedictionary.com/gastrophrenic+ligament] +subset: human_subset +subset: mouse_subset xref: FMA:16518 xref: NCIT:C32670 xref: SCTID:260725009 @@ -358834,6 +377556,8 @@ relationship: part_of UBERON:0005448 ! greater omentum id: UBERON:0035501 name: unencapsulated tactile receptor def: "Free nerve endings are widely distributed throughout the body, and are found as branches of unmyelinated, or lightly myelinated fibres grouped in bundles beneath the epithelium. As they penetrate the epithelium, they lose their myelin, and branch among the epithelial cells. Branches of one nerve may cover a wide area and overlap the territories of other nerves. The free nerve endings detect pain, touch, pressure and temperature, and are associated with C fibres." [ncithesaurus:Free_Nerve_Ending] +subset: human_subset +subset: mouse_subset synonym: "free nerve ending" EXACT [FMA:84005] synonym: "unencapsulated nerve ending" EXACT [FMA:84005] xref: FMA:84005 @@ -358848,6 +377572,8 @@ relationship: part_of UBERON:0002067 {source="ncithesaurus"} ! dermis [Term] id: UBERON:0035505 name: right inguinal part of abdomen +subset: human_subset +subset: mouse_subset synonym: "right iliac fossa viewed surgically" EXACT [FMA:24036] synonym: "right iliac region" EXACT [FMA:24036] synonym: "right inguinal region" EXACT [FMA:24036] @@ -358865,6 +377591,8 @@ relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0035508 name: branch of posterior cerebral artery +subset: human_subset +subset: mouse_subset synonym: "posterior cerebral arterial branch" EXACT [FMA:50586] xref: FMA:50586 xref: NCIT:C33351 @@ -358879,6 +377607,8 @@ relationship: part_of RO:0002577 ! system [Term] id: UBERON:0035514 name: special sense organ system +subset: human_subset +subset: mouse_subset xref: FMA:7189 xref: NCIT:C13058 xref: SCTID:276152001 @@ -358889,6 +377619,8 @@ is_a: UBERON:0011216 ! organ system subdivision id: UBERON:0035520 name: anterior mediastinal lymph node def: "A lymph node located in the superior mediastinum that collects lymph from the thymus, the pericardium, and the right side of the heart." [ncithesaurus:Anterior_Mediastinal_Lymph_Node] +subset: human_subset +subset: mouse_subset synonym: "anterior mediastinal node" EXACT [FMA:12775] xref: FMA:12775 xref: NCIT:C32097 @@ -358900,6 +377632,8 @@ is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node id: UBERON:0035523 name: anterior surface of prostate def: "The aspect of the prostate facing the pubic symphysis." [ncithesaurus:Anterior_Surface_of_the_Prostate] +subset: human_subset +subset: mouse_subset synonym: "anterior surface of prostate gland" EXACT [FMA:19591] synonym: "facies anterior (prostatae)" EXACT [FMA:19591] synonym: "facies anterior prostatae" EXACT OMO:0003011 [FMA:19591, FMA:TA] @@ -358918,6 +377652,8 @@ relationship: in_anterior_side_of UBERON:0002367 ! prostate gland id: UBERON:0035526 name: superficial fibular nerve def: "A branch of the common fibular nerve that innervates the fibularis longus and brevis muscles, and via branches innervates parts of the dorsal part of the pes." [http://medical-dictionary.thefreedictionary.com/superficial%20fibular%20nerve, ncithesaurus:Superficial_Peroneal_Nerve, UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "superficial peroneal nerve" EXACT [FMA:44699] xref: FMA:44699 xref: NCIT:C92603 @@ -358941,6 +377677,8 @@ relationship: part_of UBERON:0001324 ! common fibular nerve id: UBERON:0035529 name: left common iliac artery subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "trunk of left common iliac arterial tree" EXACT [FMA:14766] xref: FMA:14766 xref: NCIT:C32957 @@ -358958,6 +377696,8 @@ id: UBERON:0035530 name: basal vein def: "The basal vein is formed at the anterior perforated substance by the union of (a) a small anterior cerebral vein which accompanies the anterior cerebral artery and supplies the medial surface of the frontal lobe by the fronto-basal vein. (b) the deep middle cerebral vein (deep Sylvian vein), which receives tributaries from the insula and neighboring gyri, and runs in the lower part of the lateral cerebral fissure, and (c) the inferior striate veins, which leave the corpus striatum through the anterior perforated substance. The basal vein passes backward around the cerebral peduncle, and ends in the internal cerebral vein; it receives tributaries from the interpeduncular fossa, the inferior horn of the lateral ventricle, the hippocampal gyrus, and the mid-brain." [Wikipedia:Basal_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "basal vein of rosenthal" EXACT [FMA:50990] synonym: "basal veins" RELATED [Wikipedia:Basal_vein] synonym: "inferior striate vein" RELATED [Wikipedia:Basal_vein] @@ -358975,6 +377715,8 @@ id: UBERON:0035532 name: deep middle cerebral vein def: "The blood vessel that receives deoxygenated blood from the insula and gyri and drains into the basal vein of Rosenthal deep in the lateral sulcus." [ncithesaurus:Deep_Middle_Cerebral_Vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:51309 xref: NCIT:C32440 xref: SCTID:279272001 @@ -358988,6 +377730,8 @@ relationship: tributary_of UBERON:0035530 ! basal vein id: UBERON:0035536 name: body of gallbladder def: "The middle portion of the gallbladder which is distal to the gallbladder neck and proximal to the gallbladder fundus." [ncithesaurus:Gallbladder_Body] +subset: human_subset +subset: mouse_subset synonym: "gallbladder body" EXACT [FMA:14537] xref: FMA:14537 xref: NCIT:C32647 @@ -359003,6 +377747,8 @@ id: UBERON:0035539 name: esophageal artery def: "Any of several arteries that arise from the aorta and supply blood to the esophagus." [ncithesaurus:Esophageal_Artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "aortic esophageal artery" EXACT [FMA:4149] synonym: "oesophageal artery" EXACT [FMA:4149] xref: FMA:4149 @@ -359023,6 +377769,8 @@ relationship: supplies UBERON:0001043 ! esophagus id: UBERON:0035542 name: upper inner quadrant of breast def: "The quarter of the breast which is superior and medial." [ncithesaurus:Upper-inner_Quadrant_of_the_Breast] +subset: human_subset +subset: mouse_subset synonym: "upper inner quadrant of female breast" EXACT [FMA:61375] xref: FMA:61375 xref: NCIT:C12301 @@ -359040,6 +377788,8 @@ relationship: in_innermost_side_of UBERON:0000310 ! breast id: UBERON:0035545 name: deep lymphatic vessel def: "The tubules that carry lymph throughout the body that are in the interior of the body or limbs." [ncithesaurus:Deep_Lymphatic_Vessel] +subset: human_subset +subset: mouse_subset synonym: "deep lymph vessel" EXACT [FMA:52012] xref: FMA:52012 xref: NCIT:C32439 @@ -359053,6 +377803,8 @@ relationship: part_of UBERON:0035551 ! deep vasculature [Term] id: UBERON:0035546 name: uveal vein +subset: human_subset +subset: mouse_subset synonym: "ciliary vein" EXACT [FMA:51797] xref: FMA:51797 xref: SCTID:149683007 @@ -359067,6 +377819,8 @@ id: UBERON:0035547 name: posterior ciliary vein def: "The outer layer of the choroid (lamina vasculosa) consists, in part, of the larger branches of the short ciliary arteries which run forward between the veins, before they bend inward to end in the capillaries, but is formed principally of veins, named, from their arrangement, the vorticose veins. They converge to four or five equidistant trunks, which pierce the sclera about midway between the sclero-corneal junction and the entrance of the optic nerve. They drain uveal tract." [Wikipedia:Vorticose_veins] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "posterior veins" RELATED [Wikipedia:Vorticose_veins] synonym: "venae vorticasae" RELATED [Wikipedia:Vorticose_veins] synonym: "venae vorticosae" RELATED [Wikipedia:Vorticose_veins] @@ -359088,6 +377842,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0035548 name: colic artery +subset: human_subset +subset: mouse_subset xref: SCTID:77852007 is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery @@ -359102,6 +377858,8 @@ id: UBERON:0035549 name: vasculature of integument def: "The part of the circulatory system that lies within the subcutaneous tissue layers close to the surface of the skin." [http://orcid.org/0000-0002-6601-2165] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "dermis vasculature" NARROW [] synonym: "hypodermis vasculature" NARROW [] synonym: "skin vasculature" RELATED [] @@ -359121,6 +377879,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0035550 name: superficial vein def: "Any of the veins carrying deoxygenated blood from the subcutaneous tissue layers." [ncithesaurus:Superficial_Vein] +subset: human_subset +subset: mouse_subset synonym: "superfical vein" RELATED [Wikipedia:Superficial_vein] synonym: "superficial veins" RELATED [Wikipedia:Superficial_vein] synonym: "superficial vessels" RELATED [Wikipedia:Superficial_vein] @@ -359138,6 +377898,8 @@ relationship: part_of UBERON:0035549 ! vasculature of integument id: UBERON:0035551 name: deep vasculature def: "The part of the circulatory system that lies deep beneath the subcutaneous tissue layers away from the surface of the skin." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "deep part of circulatory system" EXACT [] is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature @@ -359148,6 +377910,8 @@ relationship: deep_to UBERON:0002199 ! integument id: UBERON:0035552 name: deep vein def: "A blood vessel carrying deoxygenated blood far beneath the skin usually accompanying an artery." [ncithesaurus:Deep_Vein] +subset: human_subset +subset: mouse_subset synonym: "deep veins" RELATED [Wikipedia:Deep_vein] synonym: "deep vessels" RELATED [Wikipedia:Deep_vein] xref: FMA:76718 @@ -359164,6 +377928,8 @@ relationship: part_of UBERON:0035551 ! deep vasculature id: UBERON:0035553 name: left cardiac chamber def: "Any chamber of the left side of the heart." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: FMA:7166 xref: SCTID:362008007 is_a: UBERON:0004151 ! cardiac chamber @@ -359176,6 +377942,8 @@ relationship: in_left_side_of UBERON:0000948 ! heart id: UBERON:0035554 name: right cardiac chamber def: "Any chamber of the right side of the heart." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: FMA:7165 xref: SCTID:362007002 is_a: UBERON:0004151 ! cardiac chamber @@ -359216,6 +377984,8 @@ consider: neuronames:180 id: UBERON:0035561 name: styliform element def: "An unjointed, rod-like bony or cartilaginous structures that extend from distal limb joints in tetrapods." [DOI:10.1038/nature14423, https://github.com/obophenotype/uberon/issues/695] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015021 ! forelimb endochondral element relationship: capable_of_part_of GO:0060361 {source="DOI:10.1038/nature14423"} ! flight relationship: connected_to UBERON:0009880 ! carpal skeleton @@ -359230,6 +378000,8 @@ property_value: taxon_notes "in some mammals this is found in a cartilaginous st [Term] id: UBERON:0035562 name: intermediate pretectal nucleus +subset: human_subset +subset: mouse_subset synonym: "IPT" RELATED OMO:0003000 [DMBA:16598] xref: DMBA:16598 is_a: UBERON:0014450 ! pretectal nucleus @@ -359342,6 +378114,8 @@ relationship: present_in_taxon NCBITaxon:118040 {src="ISBN:0471888893"} ! Squalo [Term] id: UBERON:0035570 name: tectothalamic tract +subset: human_subset +subset: mouse_subset synonym: "tectothalamic fibers" EXACT [NeuroNames:1424] synonym: "tectothalamic fibers" RELATED [NeuroNames:1424] synonym: "tectothalamic pathway" RELATED [NeuroNames:1424] @@ -359360,6 +378134,8 @@ relationship: part_of UBERON:0001908 ! optic tract id: UBERON:0035572 name: nucleus praetectalis profundus def: "A neural nucleus of the pretectal region that lies lateral to the posterior commissure and gives rise to widespread projections." [ISBN:0471888893] +subset: human_subset +subset: mouse_subset synonym: "nucleus pratectalis profundus" EXACT OMO:0003011 [] synonym: "profundal pretectal nucleus" EXACT [] is_a: UBERON:0014450 ! pretectal nucleus @@ -359381,6 +378157,8 @@ is_a: UBERON:0035569 ! periventricular pretectal nucleus [Term] id: UBERON:0035575 name: paracommissural nucleus of solitary tract +subset: human_subset +subset: mouse_subset xref: FMA:77466 is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract @@ -359505,12 +378283,16 @@ relationship: in_taxon NCBITaxon:8782 {source="ISBN:0471888893"} ! Aves id: UBERON:0035594 name: accessory optic system def: "Subdivision of visual system that processes movements of images across retina and regulates the movement of eyes to keep the image stable." [http://orcid.org/0000-0002-6601-2165, ISBN:0471888893] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:0035595 name: accessory optic tract +subset: human_subset +subset: mouse_subset synonym: "accessory optic fibers" RELATED [] synonym: "aot" RELATED OMO:0003000 [MBA:876] xref: MBA:876 @@ -359526,6 +378308,8 @@ id: UBERON:0035596 name: circular nucleus of antherior hypothalamic nucleus def: "A group of cells located in the central part of the anterior hypothalamic nucleus in the anterior hypothalamic region of the rat ( Swanson-2004 ) and the mouse ( Paxinos-2001 ). Functionally it belongs to the magnocellular neuroendocrine cell groups of the subcortical motor system ( Swanson-2004 )." [NeuroNames:1853] comment: group of magnocellular elements arranged in a ring around a capillary bed. The cells are predominantly monopolar, tightly packed, and are flattened at the outer border of the ring. The entire nucleus is surrounded or encapsulated by myelinated fibers, hypothesized to be an osmoreceptor[PMID:974791] +subset: human_subset +subset: mouse_subset synonym: "circular nucleus" RELATED [NeuroNames:1853] synonym: "NC" RELATED OMO:0003000 [MBA:432] synonym: "nucleus circularis" BROAD OMO:0003011 [MBA:432] @@ -359538,6 +378322,8 @@ relationship: part_of UBERON:0002271 {source="MBA"} ! periventricular zone of hy id: UBERON:0035597 name: profundal placode def: "An embryonic structure positioned halfway between the prospective eye and ear, adjacent to the future midbrain-hindbrain boundary. The profundal and the trigeminal ganglia are separate distally but fused at their proximal end as they condense around NF stage 24." [https://github.com/obophenotype/uberon/issues/693, PMID:21452441, XAO:0004093] +subset: human_subset +subset: mouse_subset synonym: "ophthalmic lobe of trigeminal placode" EXACT [NCBIBook:NBK53171] synonym: "ophthalmic lobe of trigeminal placode complex" EXACT [NCBIBook:NBK53171] synonym: "ophthalmic placode" EXACT [PMID:22512454] @@ -359549,6 +378335,8 @@ relationship: part_of UBERON:0003070 ! trigeminal placode complex [Term] id: UBERON:0035598 name: maxillomandibular placode +subset: human_subset +subset: mouse_subset synonym: "maxillomandibular lobe of trigeminal placode complex" EXACT [NCBIBook:NBK53171] synonym: "trigeminal placode" BROAD [NCBIBook:NBK53171] is_a: UBERON:0009955 ! neurogenic placode @@ -359557,6 +378345,8 @@ relationship: part_of UBERON:0003070 ! trigeminal placode complex [Term] id: UBERON:0035599 name: profundal part of trigeminal ganglion complex +subset: human_subset +subset: mouse_subset synonym: "ophthalmic division of trigeminal ganglion" RELATED [] synonym: "ophthalmic ganglion" NARROW SENSU [] synonym: "ophthalmic part of trigeminal ganglion" RELATED [] @@ -359570,6 +378360,8 @@ relationship: part_of UBERON:0001675 ! trigeminal ganglion [Term] id: UBERON:0035601 name: maxillomandibular part of trigeminal ganglion complex +subset: human_subset +subset: mouse_subset synonym: "maxillomandibular division of trigeminal ganglion" RELATED [] synonym: "maxillomandibular part of trigeminal ganglion" RELATED [] synonym: "ophthalmic ganglion" NARROW SENSU [] @@ -359612,6 +378404,8 @@ relationship: in_taxon NCBITaxon:10220 ! Enteropneusta [Term] id: UBERON:0035606 name: cartilage of external acoustic meatus +subset: human_subset +subset: mouse_subset synonym: "cartilage of acoustic meatus" EXACT [FMA:61298] synonym: "cartilage of auditory canal" EXACT [FMA:61298] synonym: "cartilago meatus acustici" EXACT [FMA:TA] @@ -359643,6 +378437,8 @@ id: UBERON:0035608 name: dura mater lymph vessel def: "Any lymph vessel that is located in the dura mater of the brain." [DOI:10.1038/nature14432, DOI:10.1111/joa.12381] comment: Louveau et al (DOI:10.1038/nature14432) claim the discovery of lymphatics in the cerebral dura mater, but this is disputed by Bucchieri et al (DOI:10.1111/joa.12381) +subset: human_subset +subset: mouse_subset synonym: "dural lymph vasculature" RELATED [] synonym: "dural lymph vessel" EXACT [] is_a: UBERON:0001473 ! lymphatic vessel @@ -359657,6 +378453,8 @@ property_value: structure_notes "while Louveau et al (DOI:10.1038/nature14432) s id: UBERON:0035609 name: outer root sheath companion layer def: "The innermost layer of the outer root sheath." [http://www.keratin.com/aa/aa022.shtml#03] +subset: human_subset +subset: mouse_subset xref: BTO:0003970 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer @@ -359667,6 +378465,8 @@ property_value: structure_notes "It contains cells that are morphologically and id: UBERON:0035610 name: hair canal def: "Tubular connection between the epidermal surface and the most distal part of the inner root sheath. Contains the hair shaft." [DOI:10.1016/j.cub.2008.12.005] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0004111 ! anatomical conduit @@ -359682,6 +378482,8 @@ relationship: part_of UBERON:0000014 ! zone of skin id: UBERON:0035611 name: hair peg def: "Column of keratinocytes growing into the dermis during embryonic hair follicle development. The concave proximal end starts to encase the dermal condensate, the future dermal papilla." [DOI:10.1016/j.cub.2008.12.005] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005423 ! developing anatomical structure relationship: composed_primarily_of CL:0000312 ! keratinocyte relationship: part_of UBERON:0002067 ! dermis @@ -359690,6 +378492,8 @@ relationship: part_of UBERON:0002067 ! dermis id: UBERON:0035612 name: nasal turbinal def: "A skeletal element of the ethmoid region with complex morphology that are lined with mucuous membranes involved in either olfaction or air conditioning." [http://palaeos.com/vertebrates/bones/braincase/ethmoid.html, UBERON:cjm, Wikipedia:Nasal_concha] +subset: human_subset +subset: mouse_subset synonym: "concha" RELATED [EMAPA:25093] synonym: "conchae nasales" RELATED OMO:0003011 [Wikipedia:Nasal_concha] synonym: "nasal concha" RELATED [] @@ -359709,6 +378513,8 @@ property_value: taxon_notes "unossified in dinosaurs[http://palaeos.com/vertebra id: UBERON:0035617 name: peripharyngeal space def: "The space filled with loose areolar tissue surrounding the pharynx; it is divided into two major divisions, the parapharyngeal space and the retropharyngeal space." [ISBN:0683400088, MGI:cs] +subset: human_subset +subset: mouse_subset xref: FMA:84964 xref: SCTID:314725004 xref: Wikipedia:Peripharyngeal_space @@ -359720,6 +378526,8 @@ relationship: surrounds UBERON:0001042 ! chordate pharynx id: UBERON:0035618 name: parapharyngeal space def: "The portion of the peripharyngeal space limited by the lateral wall of the pharynx, the cervical vertebrae and medial pterygoid muscle." [ISBN:0683400088, MGI:cs] +subset: human_subset +subset: mouse_subset synonym: "lateral pharyngeal space" EXACT [FMA:55081] synonym: "lateral pharyngeal space" RELATED [CALOHA:TS-2357] synonym: "parapharyngeal space" EXACT [FMA:55081] @@ -359736,6 +378544,8 @@ is_a: UBERON:0035617 {source="FMA"} ! peripharyngeal space id: UBERON:0035619 name: retropharyngeal space def: "The portion of the peripharyngeal space that is located posterior to the pharynx." [ISBN:0683400088, MGI:cs] +subset: human_subset +subset: mouse_subset synonym: "Henke's space" EXACT [ISBN:0683400088, MGI:cs] synonym: "postpharyngeal space" EXACT [ISBN:0683400088, MGI:cs] synonym: "spatium retropharyngeum" EXACT OMO:0003011 [FMA:84965, FMA:TA] @@ -359746,6 +378556,8 @@ is_a: UBERON:0035617 {source="FMA"} ! peripharyngeal space id: UBERON:0035634 name: quadrant of breast def: "The part of the breast that is bordered by the intermammary line and a perpendicular line bisecting the nipple." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "breast quadrant" EXACT [FMA:61373] xref: FMA:61373 is_a: UBERON:0000475 ! organism subdivision @@ -359755,6 +378567,8 @@ relationship: part_of UBERON:0000310 ! breast [Term] id: UBERON:0035635 name: upper quadrant of breast +subset: human_subset +subset: mouse_subset is_a: UBERON:0035634 ! quadrant of breast intersection_of: UBERON:0035634 ! quadrant of breast intersection_of: in_anterior_side_of UBERON:0000310 ! breast @@ -359764,6 +378578,8 @@ relationship: in_anterior_side_of UBERON:0000310 ! breast [Term] id: UBERON:0035636 name: lower quadrant of breast +subset: human_subset +subset: mouse_subset is_a: UBERON:0035634 ! quadrant of breast intersection_of: UBERON:0035634 ! quadrant of breast intersection_of: in_posterior_side_of UBERON:0000310 ! breast @@ -359773,6 +378589,8 @@ relationship: in_posterior_side_of UBERON:0000310 ! breast [Term] id: UBERON:0035637 name: inner quadrant of breast +subset: human_subset +subset: mouse_subset is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0035634 ! quadrant of breast intersection_of: UBERON:0035634 ! quadrant of breast @@ -359782,6 +378600,8 @@ relationship: in_innermost_side_of UBERON:0000310 ! breast [Term] id: UBERON:0035638 name: outer quadrant of breast +subset: human_subset +subset: mouse_subset is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0035634 ! quadrant of breast intersection_of: UBERON:0035634 ! quadrant of breast @@ -359792,6 +378612,8 @@ relationship: in_outermost_side_of UBERON:0000310 ! breast id: UBERON:0035639 name: ocular adnexa def: "The parts of the orbital region that are outside of the the eyeball, including the lacrimal apparatus, the extraocular muscles and the eyelids, eyelashes, eyebrows and the conjunctiva." [HPO:pr, http://medical-dictionary.thefreedictionary.com/ocular+adnexa, https://github.com/obophenotype/uberon/issues/1132, UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "accessory parts of orbital region" RELATED [] synonym: "accessory visual structures" RELATED [FMA:76554, Wikipedia:Accessory_visual_structures] synonym: "accessory visual structures set" RELATED [FMA:76554] @@ -359816,6 +378638,8 @@ name: middle vesical artery def: "The middle vesical artery, usually a branch of the superior vesical artery, is distributed to the fundus of the bladder and the seminal vesicles." [Wikipedia:Middle_vesical_artery] comment: This artery is not usually described in modern anatomy textbooks. Instead, it is described that the superior vesical artery may exist as multiple vessels that arise from a common origin subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: Wikipedia:Middle_vesical_artery is_a: UBERON:0001311 ! inferior vesical artery relationship: connected_to UBERON:0001312 ! superior vesical artery @@ -359827,6 +378651,8 @@ relationship: supplies UBERON:0006082 ! fundus of urinary bladder id: UBERON:0035642 name: laryngeal nerve def: "Any nerve that innervates the larynx." [UBERON:cjm] +subset: human_subset +subset: mouse_subset xref: MESH:D007823 xref: SCTID:307013006 is_a: UBERON:0001021 ! nerve @@ -359838,6 +378664,8 @@ relationship: innervates UBERON:0001737 ! larynx id: UBERON:0035646 name: anterior superior alveolar nerve def: "The anterior superior alveolar branch (anterior superior dental branch), of considerable size, is given off from the maxillary nerve just before its exit from the infraorbital foramen; it descends in a canal in the anterior wall of the maxillary sinus, and divides into branches which supply the incisor and canine teeth. It communicates with the middle superior alveolar branch, and gives off a nasal branch, which passes through a minute canal in the lateral wall of the inferior meatus, and supplies the mucous membrane of the anterior part of the inferior meatus and the floor of the nasal cavity, communicating with the nasal branches from the sphenopalatine ganglion." [Wikipedia:Anterior_superior_alveolar_nerve] +subset: human_subset +subset: mouse_subset synonym: "anterior superior alveolar branch" RELATED [Wikipedia:Anterior_superior_alveolar_nerve] synonym: "anterior superior dental nerve" EXACT [FMA:52935] xref: FMA:52935 @@ -359849,6 +378677,8 @@ is_a: UBERON:0018398 {source="FMA"} ! superior alveolar nerve id: UBERON:0035647 name: posterior auricular nerve def: "A branch of the facial nerve that innervates the posterior auricular and intrinsic muscles of the auricle and, through its occipital branch, innervates the occipital belly of the occipitofrontal muscle." [http://dictionary.reference.com/browse/posterior+auricular+nerve] +subset: human_subset +subset: mouse_subset synonym: "auricularis posterior branch of facial nerve" EXACT [FMA:53278] synonym: "posterior auricular branch of the facial" RELATED [Wikipedia:Posterior_auricular_nerve] xref: FMA:53278 @@ -359865,6 +378695,8 @@ relationship: part_of UBERON:0003725 ! cervical nerve plexus id: UBERON:0035648 name: nerve innervating pinna def: "Any nerve that innervates the pinna." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "auricular nerve" EXACT [MA:0001232] xref: EMAPA:36513 xref: MA:0001232 @@ -359879,6 +378711,8 @@ relationship: part_of UBERON:0001647 ! facial nerve id: UBERON:0035649 name: nerve of penis def: "Any nerve that innervates the penis." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "penile nerve" EXACT [] synonym: "penis nerve" EXACT [] xref: EMAPA:35057 @@ -359892,6 +378726,8 @@ id: UBERON:0035650 name: nerve of clitoris def: "Any nerve that innervates the clitoris." [UBERON:cjm] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "clitoral nerve" EXACT [] synonym: "clitoris nerve" EXACT [] xref: EMAPA:35044 @@ -359904,6 +378740,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0035651 name: glans +subset: human_subset +subset: mouse_subset xref: Wikipedia:Glans is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0004120 ! mesoderm-derived structure @@ -359918,6 +378756,8 @@ id: UBERON:0035652 name: fibular nerve def: "Any nerve that innervates the fibularis. Includes the common fibular nerve, and its branches." [UBERON:cjm] subset: grouping_class +subset: human_subset +subset: mouse_subset synonym: "peroneal nerve" EXACT [] xref: EMAPA:36511 xref: MESH:D010543 @@ -359931,6 +378771,8 @@ id: UBERON:0035655 name: paraumbilical vein def: "The small superficial veins that arise from the cutaneous veins, and run from the umbilicus along the round ligament of the liver; these terminate as accessory portal veins in the liver." [https://github.com/obophenotype/uberon/issues/1134, ISBN:0683400088, MGI:cs, PMID:7400038] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "para-umbilical vein" RELATED [Wikipedia:Paraumbilical_vein] synonym: "para-umbilical veins" RELATED OMO:0003004 [FMA:71591] synonym: "para-umbilical veins set" RELATED OMO:0003004 [FMA:71591] @@ -359955,6 +378797,8 @@ id: UBERON:0035659 name: deep facial vein def: "The anterior facial vein receives a branch of considerable size, the deep facial vein, from the pterygoid venous plexus." [Wikipedia:Deep_facial_vein] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:50916 xref: Wikipedia:Deep_facial_vein is_a: UBERON:0001638 ! vein @@ -359966,6 +378810,8 @@ relationship: tributary_of UBERON:0001653 ! facial vein id: UBERON:0035662 name: parotid vein subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "anterior parotid vein" EXACT [FMA:50919] synonym: "parotid branch of facial vein" EXACT [FMA:50919] xref: FMA:50919 @@ -359981,6 +378827,8 @@ relationship: tributary_of UBERON:0001653 ! facial vein id: UBERON:0035675 name: anterior facial vein def: "A vein that represents a continuation of the angular vein and lies behind the facial artery." [ncithesaurus:Anterior_Facial_Vein, NCITID__Anterior_Facial_Vein] +subset: human_subset +subset: mouse_subset xref: EMAPA:37133 {source="MA:th"} xref: MA:0002116 xref: NCIT:C52687 @@ -359992,6 +378840,8 @@ relationship: tributary_of UBERON:0001653 ! facial vein [Term] id: UBERON:0035676 name: secondary yolk sac cavity +subset: human_subset +subset: mouse_subset synonym: "cavity of definitive yolk sac" EXACT [FMA:305890] synonym: "cavity of secondary yolk sac" EXACT [FMA:305890] synonym: "definitive yolk sac cavity" EXACT [FMA:305890] @@ -360008,6 +378858,8 @@ relationship: luminal_space_of UBERON:0008852 ! visceral yolk sac [Term] id: UBERON:0035677 name: primary yolk sac cavity +subset: human_subset +subset: mouse_subset synonym: "cavity of primary yolk sac" EXACT [FMA:305888] synonym: "primary yolk sac cavity" EXACT [FMA:305888] synonym: "primary yolk sac space" EXACT [FMA:305888] @@ -360025,6 +378877,8 @@ relationship: part_of UBERON:0008853 ! parietal yolk sac id: UBERON:0035753 name: capillary plexus def: "A network of capillaries." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "capillary network" EXACT [FMA:45633] xref: FMA:45633 is_a: UBERON:0004537 ! blood vasculature @@ -360034,6 +378888,8 @@ property_value: external_ontology_notes "in FMA this is part_of an intestinal vi [Term] id: UBERON:0035754 name: pulmonary capillary plexus +subset: human_subset +subset: mouse_subset synonym: "capillary network of lung" EXACT [FMA:264928] synonym: "pulmonary capillary network" EXACT [FMA:264928] xref: FMA:264928 @@ -360045,6 +378901,8 @@ relationship: part_of UBERON:0008886 ! pulmonary vascular system [Term] id: UBERON:0035755 name: systemic capillary plexus +subset: human_subset +subset: mouse_subset synonym: "systemic capillary network" EXACT [FMA:264934] xref: FMA:264934 is_a: UBERON:0035753 ! capillary plexus @@ -360055,6 +378913,8 @@ relationship: part_of UBERON:0004581 ! systemic venous system [Term] id: UBERON:0035756 name: capillary network of liver +subset: human_subset +subset: mouse_subset synonym: "capillary plexus of liver" EXACT [FMA:280884] synonym: "hepatic capillary network" EXACT [FMA:280884] synonym: "hepatic capillary plexus" EXACT [] @@ -360070,6 +378930,8 @@ relationship: part_of UBERON:0006877 {source="EHDAA2"} ! vasculature of liver [Term] id: UBERON:0035757 name: embryonic capillary plexus +subset: human_subset +subset: mouse_subset synonym: "embryonic venous capillary plexus" EXACT [EHDAA2:0004540] xref: EHDAA2:0004540 is_a: UBERON:0035753 ! capillary plexus @@ -360080,6 +378942,8 @@ relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0035758 name: peritubular capillary plexus of kidney +subset: human_subset +subset: mouse_subset synonym: "peritubular capillary network of kidney" EXACT [FMA:272218] synonym: "peritubular capillary plexus" EXACT [FMA:272218] xref: FMA:272218 @@ -360093,6 +378957,8 @@ relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0035762 name: capillary network of kidney +subset: human_subset +subset: mouse_subset synonym: "capillary plexus of kidney" EXACT [FMA:280922] xref: FMA:280922 is_a: UBERON:0006544 ! kidney vasculature @@ -360104,6 +378970,8 @@ relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0035763 name: cavity of cardiac chamber +subset: human_subset +subset: mouse_subset synonym: "cardiac chamber cavity" EXACT [FMA:9464] synonym: "heart cavity" EXACT [FMA:9464] synonym: "heart lumen" EXACT [EHDAA2:0004181] @@ -360119,6 +378987,8 @@ relationship: surrounded_by UBERON:0002165 {source="FMA"} ! endocardium [Term] id: UBERON:0035764 name: pulmonary lymph node +subset: human_subset +subset: mouse_subset synonym: "intrapulmonary lymph node" EXACT [FMA:5968] synonym: "pulmonary node" EXACT [FMA:5968] xref: FMA:5968 @@ -360131,6 +379001,8 @@ relationship: part_of UBERON:0008886 ! pulmonary vascular system id: UBERON:0035765 name: subsegmental lymph node def: "The lymph nodes around the subsegmental bronchi." [ncithesaurus:Subsegmental_Lymph_Node, NCITID__Subsegmental_Lymph_Node] +subset: human_subset +subset: mouse_subset xref: FMA:276861 xref: NCIT:C28745 xref: UMLS:C1515031 @@ -360140,6 +379012,8 @@ is_a: UBERON:0035764 {source="FMA"} ! pulmonary lymph node id: UBERON:0035766 name: median lobe of prostate def: "The upper, smaller part of the prostate between the ejaculatory ducts and the urethra." [ncithesaurus:Middle_Lobe_of_the_Prostate] +subset: human_subset +subset: mouse_subset synonym: "Albarran's gland" EXACT [FMA:45701] synonym: "cranial part of prostate" EXACT [FMA:45701] synonym: "lobus medius prostatae" EXACT OMO:0003011 [FMA:TA] @@ -360156,6 +379030,8 @@ is_a: UBERON:0001328 {source="FMA"} ! lobe of prostate [Term] id: UBERON:0035767 name: intrapulmonary bronchus +subset: human_subset +subset: mouse_subset xref: FMA:223208 xref: NCIT:C12930 xref: UMLS:C1512970 @@ -360169,6 +379045,8 @@ id: UBERON:0035768 name: coccygeal nerve plexus def: "The coccygeal plexus is a plexus of nerves near the coccyx bone." [Wikipedia:Coccygeal_plexus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "coccygeal plexus" EXACT [FMA:45356] synonym: "plexus coccygeus" EXACT OMO:0003011 [FMA:TA] xref: FMA:45356 @@ -360180,6 +379058,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0035769 name: mesenteric ganglion +subset: human_subset +subset: mouse_subset xref: SCTID:314754005 is_a: UBERON:0003964 ! prevertebral ganglion intersection_of: UBERON:0003964 ! prevertebral ganglion @@ -360191,6 +379071,8 @@ id: UBERON:0035770 name: inferior mesenteric nerve plexus def: "The inferior mesenteric plexus is derived chiefly from the aortic plexus. It surrounds the inferior mesenteric artery, and divides into a number of secondary plexuses, which are distributed to all the parts supplied by the artery, viz. , the left colic and sigmoid plexuses, which supply the descending and sigmoid parts of the colon; and the superior hemorrhoidal plexus, which supplies the rectum and joins in the pelvis with branches from the pelvic plexuses." [Wikipedia:Inferior_mesenteric_plexus] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "inferior mesenteric plexus" EXACT [FMA:6641] synonym: "plexus mesentericus inferior" EXACT OMO:0003011 [FMA:TA] synonym: "plexus nervosus mesentericus inferior" EXACT OMO:0003011 [FMA:TA] @@ -360215,6 +379097,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0035771 name: mesenteric plexus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: SCTID:314752009 is_a: UBERON:0001816 ! autonomic nerve plexus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -360223,6 +379107,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0035772 name: aortic plexus subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:80133 is_a: UBERON:0001816 {source="FMA"} ! autonomic nerve plexus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -360231,6 +379117,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0035773 name: abdominal nerve plexus def: "The abdominal aortic plexus (aortic plexus) is formed by branches derived, on either side, from the celiac plexus and ganglia, and receives filaments from some of the lumbar ganglia. It is situated upon the sides and front of the aorta, between the origins of the superior and inferior mesenteric arteries. From this plexus arise part of the spermatic, the inferior mesenteric, and the hypogastric plexuses; it also distributes filaments to the inferior vena cava." [Wikipedia:Abdominal_aortic_plexus] +subset: human_subset +subset: mouse_subset synonym: "abdominal aortic nerve plexus" EXACT [FMA:6640] synonym: "abdominal aortic plexus" EXACT [FMA:6640] synonym: "plexus aorticus abdominalis" EXACT OMO:0003011 [FMA:TA] @@ -360245,6 +379133,8 @@ is_a: UBERON:0035772 ! aortic plexus id: UBERON:0035774 name: thoracic aortic plexus def: "The thoracic aortic plexus is a sympathetic plexus in the region of the thoracic aorta." [Wikipedia:Thoracic_aortic_plexus] +subset: human_subset +subset: mouse_subset synonym: "plexus aorticus thoracicus" EXACT OMO:0003011 [FMA:TA] synonym: "plexus nervosus aorticus thoracicus" EXACT OMO:0003011 [FMA:TA] synonym: "thoracic aortic nerve plexus" EXACT [FMA:77574] @@ -360256,6 +379146,8 @@ is_a: UBERON:0035772 ! aortic plexus id: UBERON:0035775 name: submandibular region def: "The region between the mandible and the hyoid bone that contains the submandibular and sublingual glands, suprahyoid muscles, submandibular ganglion, and lingual artery." [https://github.com/obophenotype/uberon/issues/1137] +subset: human_subset +subset: mouse_subset synonym: "digastric triangle" NARROW [FMA:57779, Wikipedia:Submandibular_triangle] synonym: "submandibular triangle" NARROW [FMA:57779] synonym: "submaxillary triangle" NARROW [FMA:57779, Wikipedia:Submandibular_triangle] @@ -360271,6 +379163,8 @@ property_value: external_ontology_notes "we place submandibular triangle from FM id: UBERON:0035776 name: accessory ciliary ganglion def: "A parasympathetic ganglion located on the short ciliary nerve differentiated from the main ciliary ganglion by virtue of the fact that it had no root derived directly from the inferior trunk of the oculomotor nerve and it never attaches to this nerve." [PMID:2802184] +subset: human_subset +subset: mouse_subset is_a: UBERON:0035783 ! ganglion of ciliary nerve relationship: extends_fibers_into UBERON:0022302 ! short ciliary nerve relationship: mutually_spatially_disjoint_with UBERON:0001643 ! oculomotor nerve @@ -360281,6 +379175,8 @@ property_value: taxon_notes "tested for and found to be present in pig, sika dee id: UBERON:0035783 name: ganglion of ciliary nerve def: "Any parasympathetic ganglion that extends fibers into the short ciliary nerve. Includes both the main and acccessory ciliary ganglia." [UBERON:cjm] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001808 ! parasympathetic ganglion intersection_of: UBERON:0001808 ! parasympathetic ganglion intersection_of: extends_fibers_into UBERON:0022302 ! short ciliary nerve @@ -360293,6 +379189,8 @@ relationship: part_of UBERON:0004088 ! orbital region id: UBERON:0035784 name: seminal clot def: "A portion of semen in a coagulated state." [http://orcid.org/0000-0002-6601-2165, PMID:18482984] +subset: human_subset +subset: mouse_subset synonym: "seminal coagulum" EXACT [PMID:18482984] is_a: UBERON:0001968 ! semen intersection_of: UBERON:0001968 ! semen @@ -360320,6 +379218,8 @@ relationship: part_of UBERON:0007334 {source="Wikipedia"} ! nidopallium [Term] id: UBERON:0035786 name: layer of CA1 field +subset: human_subset +subset: mouse_subset subset: non_informative xref: FMA:277844 is_a: UBERON:0002305 ! layer of hippocampus @@ -360330,6 +379230,8 @@ relationship: part_of UBERON:0003881 ! CA1 field of hippocampus [Term] id: UBERON:0035787 name: layer of CA2 field +subset: human_subset +subset: mouse_subset subset: non_informative xref: FMA:277846 is_a: UBERON:0002305 ! layer of hippocampus @@ -360340,6 +379242,8 @@ relationship: part_of UBERON:0003882 ! CA2 field of hippocampus [Term] id: UBERON:0035788 name: layer of CA3 field +subset: human_subset +subset: mouse_subset subset: non_informative xref: FMA:277848 is_a: UBERON:0002305 ! layer of hippocampus @@ -360351,6 +379255,8 @@ relationship: part_of UBERON:0003883 ! CA3 field of hippocampus id: UBERON:0035802 name: alveus of CA2 field def: "Part of alveus lying within hippocampal sector CA2." [UBERON:cjm] +subset: human_subset +subset: mouse_subset xref: FMA:277876 is_a: UBERON:0035787 ! layer of CA2 field intersection_of: UBERON:0035787 ! layer of CA2 field @@ -360361,6 +379267,8 @@ relationship: part_of UBERON:0007639 ! hippocampus alveus id: UBERON:0035803 name: extrapyramidal tract system def: "A neural network located in the brain that is part of the motor system involved in the coordination of movement that is distinct from the pyramidal tract." [Wikipedia:Extrapyramidal_system] +subset: human_subset +subset: mouse_subset synonym: "eps" RELATED OMO:0003000 [MBA:1000] synonym: "extra-pyramidal tract" RELATED [Wikipedia:Extrapyramidal_system] synonym: "extrapyramidal fibre" RELATED [Wikipedia:Extrapyramidal_system] @@ -360383,6 +379291,8 @@ relationship: part_of UBERON:0025525 ! motor system id: UBERON:0035804 name: future mouth def: "The primordial mouth region of the developing head." [MP:0003119] +subset: human_subset +subset: mouse_subset synonym: "primitive mouth" EXACT [FMA:293105] synonym: "primordial mouth" EXACT [] xref: FMA:293105 @@ -360395,6 +379305,8 @@ relationship: part_of UBERON:0007026 ! presumptive gut id: UBERON:0035805 name: muscle layer of sigmoid colon def: "A muscle layer that is part of the sigmoid colon." [https://github.com/obophenotype/uberon/issues/1162] +subset: human_subset +subset: mouse_subset synonym: "muscularis externa of sigmoid colon" EXACT [FMA:15028] synonym: "muscularis propria of sigmoid colon" EXACT [] synonym: "sigmoid colon muscularis propria" EXACT [] @@ -360410,6 +379322,8 @@ relationship: part_of UBERON:0001159 ! sigmoid colon id: UBERON:0035806 name: Hensen stripe def: "The dark, nonstriated, V-shaped band (ridge) found on the underside of the tectorial membrane in the basal region of the cochlea, from which fine gelatinous trabeculae extend to fix the TM to the border cells, i.e. cells directly adjacent to the inner phalangeal cells." [MGI:anna] +subset: human_subset +subset: mouse_subset synonym: "Hensen's stripe" EXACT [MGI:anna] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 {source="cjm"} ! acellular membrane @@ -360442,6 +379356,8 @@ relationship: part_of UBERON:0007350 {source="BTO"} ! arcopallium [Term] id: UBERON:0035809 name: serous cavity +subset: human_subset +subset: mouse_subset xref: FMA:12241 xref: SCTID:304404008 is_a: UBERON:0002553 ! anatomical cavity @@ -360454,6 +379370,8 @@ relationship: part_of UBERON:0005906 ! serous sac id: UBERON:0035814 name: pericardial fat def: "The sum of epicardial and paracardial fat deposits." [DOI:10.5935/abc.20130138] +subset: human_subset +subset: mouse_subset xref: SCTID:42267001 xref: ZFA:0005765 is_a: UBERON:0035818 ! visceral fat @@ -360465,6 +379383,8 @@ relationship: surrounds UBERON:0000948 ! heart id: UBERON:0035815 name: paracardial fat def: "Fat deposits in the mediastinum outside the parietal pericardium ." [DOI:10.5935/abc.20130138] +subset: human_subset +subset: mouse_subset synonym: "intrathoracic fat" EXACT [DOI:10.5935/abc.20130138] is_a: UBERON:0035814 ! pericardial fat intersection_of: UBERON:0001013 ! adipose tissue @@ -360477,6 +379397,8 @@ relationship: surrounds UBERON:0000948 ! heart id: UBERON:0035818 name: visceral fat def: "Any fat deposit surrounding a visceral organ." [UBERON:cjm] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001013 ! adipose tissue intersection_of: UBERON:0001013 ! adipose tissue intersection_of: surrounds UBERON:0000062 ! organ @@ -360486,6 +379408,8 @@ relationship: surrounds UBERON:0000062 ! organ id: UBERON:0035819 name: abdominopelvic cavity def: "The part of the ventral body cavity that is within the abdominal segment of the trunk, which encompasses the abdomen proper plus pelvic cavity." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "cavitas abdominis et pelvis" EXACT OMO:0003011 [FMA:TA] xref: FMA:12267 xref: Wikipedia:Abdominopelvic_cavity @@ -360501,6 +379425,8 @@ relationship: part_of UBERON:0002417 ! abdominal segment of trunk id: UBERON:0035820 name: peritoneal sac def: "A serous sac that is the aggregate of the peritoneum and the peritoneal cavity, located in the abdominal cavity." [https://github.com/obophenotype/uberon/issues/86] +subset: human_subset +subset: mouse_subset synonym: "peritoneal component" RELATED [EMAPA:16137] xref: EMAPA:16137 xref: FMA:9908 @@ -360514,6 +379440,8 @@ relationship: located_in UBERON:0003684 ! abdominal cavity id: UBERON:0035825 name: left adrenal gland cortex def: "The thick outer layer of the adrenal gland that is in the left side of the abdomen." [https://github.com/obophenotype/uberon/issues/1170] +subset: human_subset +subset: mouse_subset synonym: "cortex of left adrenal gland" EXACT [FMA:69089] synonym: "cortex of left suprarenal gland" EXACT [FMA:69089] synonym: "left adrenal cortex" EXACT [FMA:69089] @@ -360527,6 +379455,8 @@ relationship: part_of UBERON:0001234 ! left adrenal gland id: UBERON:0035826 name: left adrenal gland medulla def: "The adrenal gland medulla that is in the left side of the abdomen." [https://github.com/obophenotype/uberon/issues/1170] +subset: human_subset +subset: mouse_subset synonym: "left adrenal medulla" EXACT [FMA:69092] synonym: "medulla of left adrenal gland" EXACT [FMA:69092] synonym: "medulla of left suprarenal gland" EXACT [FMA:69092] @@ -360540,6 +379470,8 @@ relationship: part_of UBERON:0001234 ! left adrenal gland id: UBERON:0035827 name: right adrenal gland cortex def: "The thick outer layer of the adrenal gland that is in the right side of the abdomen." [https://github.com/obophenotype/uberon/issues/1170] +subset: human_subset +subset: mouse_subset synonym: "cortex of right adrenal gland" EXACT [FMA:69088] synonym: "cortex of right suprarenal gland" EXACT [FMA:69088] synonym: "right adrenal cortex" EXACT [FMA:69088] @@ -360553,6 +379485,8 @@ relationship: part_of UBERON:0001233 ! right adrenal gland id: UBERON:0035828 name: right adrenal gland medulla def: "The adrenal gland medulla that is in the right side of the abdomen." [https://github.com/obophenotype/uberon/issues/1170] +subset: human_subset +subset: mouse_subset synonym: "medulla of right adrenal gland" EXACT [FMA:69091] synonym: "medulla of right suprarenal gland" EXACT [FMA:69091] synonym: "right adrenal medulla" EXACT [FMA:69091] @@ -360567,6 +379501,8 @@ id: UBERON:0035829 name: right gastroepiploic artery def: "Artery that runs from right to left along the greater curvature of the stomach, between the layers of the greater omentum, anastomosing with the left gastroepiploic branch of the splenic artery." [Wikipedia:Right_gastro-omental_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria gastro-omentalis dextra" EXACT OMO:0003011 [Wikipedia:Right_gastro-omental_artery] synonym: "arteria gastroepiploica dextra" EXACT OMO:0003011 [Wikipedia:Right_gastro-omental_artery] synonym: "arteria gastroomentalis dextra" EXACT OMO:0003011 [Wikipedia:Right_gastro-omental_artery] @@ -360588,6 +379524,8 @@ id: UBERON:0035830 name: left gastroepiploic artery def: "Artery that runs from left to right along the greater curvature of the stomach, between the layers of the greater omentum, and anastomoses with the right gastroepiploic." [Wikipedia:Left_gastro-omental_artery] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteria gastro-omentalis sinistra" EXACT OMO:0003011 [Wikipedia:Left_gastro-omental_artery] synonym: "arteria gastroepiploica sinistra" EXACT OMO:0003011 [Wikipedia:Left_gastro-omental_artery] synonym: "arteria gastroomentalis sinistra" EXACT OMO:0003011 [Wikipedia:Left_gastro-omental_artery] @@ -360608,6 +379546,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0035831 name: costal diaphragm def: "The domain of the diaphragm that is a thin domed sheet of muscle composed of a radial array of myofibers extending laterally from the ribs and medially to a central tendon." [PMID:23586979] +subset: human_subset +subset: mouse_subset synonym: "costal part of diaphragm" EXACT [FMA:58277] synonym: "pars costalis diaphragmatis" EXACT OMO:0003011 [FMA:TA] xref: FMA:58277 @@ -360635,6 +379575,8 @@ property_value: function_notes "upon stimulation of right phrenic nerve, may cau [Term] id: UBERON:0035833 name: lower esophagus muscularis layer +subset: human_subset +subset: mouse_subset synonym: "lower esophagus muscularis propria" EXACT [] synonym: "muscle coat of lower esophagus" EXACT [] is_a: UBERON:0011878 ! muscle layer of esophagus @@ -360646,6 +379588,8 @@ relationship: seeAlso FMA:63042 [Term] id: UBERON:0035834 name: lower esophagus mucosa +subset: human_subset +subset: mouse_subset is_a: UBERON:0002469 ! esophagus mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0013473 ! lower esophagus @@ -360656,6 +379600,8 @@ relationship: seeAlso FMA:63008 id: UBERON:0035835 name: apical region of left ventricle def: "Region around the apex of the cardiac left ventricle located at the bottom of the left ventricle inferior to both the mitral and aortic valve." [https://github.com/obophenotype/uberon/issues/1169, https://orcid.org/0000-0003-3308-6245] +subset: human_subset +subset: mouse_subset synonym: "apical zone of left ventricle" EXACT [FMA:225374] xref: FMA:225374 xref: SCTID:264843009 @@ -360667,6 +379613,8 @@ relationship: part_of UBERON:0002084 ! heart left ventricle [Term] id: UBERON:0035836 name: apical region of right ventricle +subset: human_subset +subset: mouse_subset synonym: "apical zone of right ventricle" EXACT [FMA:230605] xref: FMA:230605 xref: SCTID:264913008 @@ -360678,6 +379626,8 @@ relationship: part_of UBERON:0002080 ! heart right ventricle [Term] id: UBERON:0035837 name: apical region of heart ventricle +subset: human_subset +subset: mouse_subset synonym: "apex of cardiac ventricle" RELATED [MA:0003017] synonym: "apex of heart ventricle" RELATED [MA:0003017] synonym: "apical region of cardiac ventricle" EXACT [] @@ -360691,6 +379641,8 @@ relationship: part_of UBERON:0002082 ! cardiac ventricle id: UBERON:0035838 name: esophagogastric junction mucosa def: "Mucosa from the lowest portion of the esophagus, just proximal to the stomach." [https://github.com/obophenotype/uberon/issues/1182] +subset: human_subset +subset: mouse_subset synonym: "gastro-esophageal junction mucosa" EXACT [EMAPA:27039] xref: EMAPA:27039 is_a: UBERON:0000344 ! mucosa @@ -360702,6 +379654,8 @@ relationship: part_of UBERON:0007650 ! esophagogastric junction id: UBERON:0035839 name: esophagogastric junction submucosa def: "Submucosa from the lowest portion of the esophagus, just proximal to the stomach." [https://github.com/obophenotype/uberon/issues/1182] +subset: human_subset +subset: mouse_subset synonym: "gastro-esophageal junction submucosa" EXACT [EMAPA:27041] xref: EMAPA:27041 is_a: UBERON:0000009 ! submucosa @@ -360713,6 +379667,8 @@ relationship: part_of UBERON:0007650 ! esophagogastric junction id: UBERON:0035840 name: esophagogastric junction muscularis mucosa def: "Muscularis mucosa from the lowest portion of the esophagus, just proximal to the stomach." [https://github.com/obophenotype/uberon/issues/1182] +subset: human_subset +subset: mouse_subset synonym: "gastro-esophageal junction muscularis mucosa" EXACT [EMAPA:27051] xref: EMAPA:27051 is_a: UBERON:0006676 ! muscularis mucosa @@ -360724,6 +379680,8 @@ relationship: part_of UBERON:0007650 ! esophagogastric junction id: UBERON:0035841 name: esophagogastric junction muscularis propria def: "Muscularis propria from the lowest portion of the esophagus, just proximal to the stomach." [https://github.com/obophenotype/uberon/issues/1182] +subset: human_subset +subset: mouse_subset synonym: "gastro-esophageal junction muscularis propria" EXACT [] is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat @@ -360734,6 +379692,8 @@ relationship: part_of UBERON:0007650 ! esophagogastric junction id: UBERON:0035842 name: extensor digitorum brevis manus def: "An accessory extensor muscle of the hand found in some humans and other animals." [ISBN:9781439883365] +subset: human_subset +subset: mouse_subset synonym: "extensor brevis digitorum manus" EXACT [] synonym: "extensor digitorum brevis manus muscle" EXACT [] is_a: UBERON:0000311 ! extensor muscle @@ -360743,6 +379703,8 @@ relationship: part_of UBERON:0002398 ! manus [Term] id: UBERON:0035843 name: lower esophagus submucosa +subset: human_subset +subset: mouse_subset is_a: UBERON:0001972 ! submucosa of esophagus intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0013473 ! lower esophagus @@ -360752,6 +379714,8 @@ relationship: seeAlso FMA:63038 [Term] id: UBERON:0035844 name: lower esophagus muscularis mucosa +subset: human_subset +subset: mouse_subset synonym: "lamina muscularis of lower esophagus" EXACT [] is_a: UBERON:0004648 ! esophagus muscularis mucosa intersection_of: UBERON:0006676 ! muscularis mucosa @@ -360763,6 +379727,8 @@ relationship: seeAlso FMA:63062 id: UBERON:0035845 name: enthesis def: "The connective tissue between tendon and bone insertion sites, which acts to transmit tensile load from soft tissues to bone. They may be of the dense fibrous connective tissue or fibrocartilage type; fibrous entheses attach directly to bone or periosteum primarily via fibrous tissue, and fibrocartilaginous entheses attach to bone through a transitional layer of fibrocartilage from the fibrous tendon tissue the sites where tendons or ligaments insert into the bone. Recurring stress or inflammatory autoimmune disease can cause inflammation or occasionally fibrosis and calcification of the enthesis." [https://github.com/obophenotype/uberon/issues/1185, MGI:cs, PMID:25489552, PMID:26472070, Wikipedia:Enthesis] +subset: human_subset +subset: mouse_subset xref: SCTID:410054009 xref: Wikipedia:Enthesis is_a: UBERON:0002384 ! connective tissue @@ -360774,6 +379740,8 @@ relationship: part_of UBERON:0002204 ! musculoskeletal system id: UBERON:0035846 name: fibrous enthesis comment: fibrous entheses attach directly to bone or periosteum primarily via fibrous tissue +subset: human_subset +subset: mouse_subset is_a: UBERON:0035845 ! enthesis intersection_of: UBERON:0035845 ! enthesis intersection_of: composed_primarily_of UBERON:0007846 ! dense regular connective tissue @@ -360783,6 +379751,8 @@ relationship: composed_primarily_of UBERON:0007846 ! dense regular connective ti id: UBERON:0035847 name: fibrocartilage enthesis comment: fibrocartilaginous entheses attach to bone through a transitional layer of fibrocartilage from the fibrous tendon tissue the sites where tendons or ligaments insert into the bone +subset: human_subset +subset: mouse_subset is_a: UBERON:0035845 ! enthesis intersection_of: UBERON:0035845 ! enthesis intersection_of: composed_primarily_of UBERON:0001995 ! fibrocartilage @@ -360792,6 +379762,8 @@ relationship: composed_primarily_of UBERON:0001995 ! fibrocartilage id: UBERON:0035848 name: infraorbital margin def: "The infraorbital margin is the lower margin of the orbita." [Wikipedia:Infraorbital_margin] +subset: human_subset +subset: mouse_subset synonym: "inferior orbital rim" EXACT [] synonym: "infra-orbital margin" EXACT [FMA:53177, Wikipedia:Infraorbital_margin] synonym: "margo infraorbitalis" EXACT OMO:0003011 [FMA:TA] @@ -360806,6 +379778,8 @@ relationship: part_of UBERON:0035849 ! orbital margin id: UBERON:0035849 name: orbital margin def: "The mostly sharp edge of the orbital opening that is the peripheral border of the base of the pyramidal orbit." [http://www.medilexicon.com/medicaldictionary.php?t=52793] +subset: human_subset +subset: mouse_subset synonym: "margin of orbit" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=52793] synonym: "margo orbitalis" EXACT OMO:0003011 [FMA:TA, http://www.medilexicon.com/medicaldictionary.php?t=52793] synonym: "orbital rim" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=52793] @@ -360820,6 +379794,7 @@ relationship: surrounds UBERON:0004867 ! orbital cavity id: UBERON:0035850 name: infraorbital bridge def: "A ridge of bone connecting left and right orbital margins located beneath the eye sockets." [UBERON:cjm] +subset: mouse_subset synonym: "infra-orbital bridge" EXACT [] is_a: UBERON:0005913 ! zone of bone organ relationship: connects UBERON:0001697 ! orbit of skull @@ -360831,6 +379806,7 @@ property_value: depiction "http://media.eol.org/content/2010/03/24/02/63782_580_ [Term] id: UBERON:0035872 name: primary somatosensory area barrel field layer 5 +subset: mouse_subset synonym: "barrel cortex layer 5" RELATED [NLX:157671] synonym: "SSp-bfd5" RELATED OMO:0003000 [MBA:1070] xref: MBA:1070 @@ -360842,6 +379818,7 @@ relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel co [Term] id: UBERON:0035873 name: primary somatosensory area barrel field layer 1 +subset: mouse_subset synonym: "SSp-bfd1" RELATED OMO:0003000 [MBA:981] xref: MBA:981 xref: NLX:157672 @@ -360852,6 +379829,7 @@ relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel co [Term] id: UBERON:0035874 name: primary somatosensory area barrel field layer 2/3 +subset: mouse_subset synonym: "barrel cortex layer 2/3" RELATED [NLX:157673] synonym: "SSp-bfd2/3" RELATED OMO:0003000 [MBA:201] xref: MBA:201 @@ -360863,6 +379841,7 @@ relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel co [Term] id: UBERON:0035875 name: primary somatosensory area barrel field layer 6b +subset: mouse_subset synonym: "barrel cortex layer 6B" RELATED [NLX:157674] synonym: "SSp-bfd6b" RELATED OMO:0003000 [MBA:1062] xref: MBA:1062 @@ -360874,6 +379853,7 @@ relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel co [Term] id: UBERON:0035876 name: primary somatosensory area barrel field layer 6a +subset: mouse_subset synonym: "barrel cortex layer 6A" RELATED [NLX:157675] synonym: "SSp-bfd6a" RELATED OMO:0003000 [MBA:1038] xref: MBA:1038 @@ -360885,6 +379865,7 @@ relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel co [Term] id: UBERON:0035877 name: primary somatosensory area barrel field layer 4 +subset: mouse_subset synonym: "barrel cortex layer 4" RELATED [NLX:157676] synonym: "SSp-bfd4" RELATED OMO:0003000 [MBA:1047] xref: MBA:1047 @@ -360897,6 +379878,8 @@ relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel co id: UBERON:0035878 name: subchondral region of epiphysis def: "The bone region of the epiphysis that provides underlying mechanical and physiological support for the cartilage of joint articular surfaces." [https://github.com/obophenotype/uberon/issues/1195, MGI:csmith, PMID:20392241, PMID:24084727] +subset: human_subset +subset: mouse_subset synonym: "subchondral bone" EXACT [] is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0001437 {source="MGI:csmith"} ! epiphysis @@ -360905,6 +379888,8 @@ relationship: part_of UBERON:0001437 {source="MGI:csmith"} ! epiphysis id: UBERON:0035879 name: frontomaxillary suture def: "A suture between the frontal bone and the frontal process of the maxilla." [http://medical-dictionary.thefreedictionary.com/frontomaxillary+suture] +subset: human_subset +subset: mouse_subset synonym: "frontomaxillary suture of skull" EXACT [FMA:52950] synonym: "sutura frontomaxillaris" EXACT OMO:0003011 [FMA:TA] xref: FMA:52950 @@ -360919,6 +379904,8 @@ relationship: connects UBERON:0013767 ! frontal process of maxilla id: UBERON:0035880 name: zygomaticomaxillary suture def: "A suture between the zygomatic bone and the zygomatic process of the maxilla." [http://medical-dictionary.thefreedictionary.com/zygomaticomaxillary+suture] +subset: human_subset +subset: mouse_subset synonym: "sutura infraorbitalis" EXACT OMO:0003011 [FMA:TA] synonym: "sutura zygomaticomaxillaris" EXACT OMO:0003011 [FMA:TA] synonym: "zygomaticomaxillary suture of skull" EXACT [FMA:52953] @@ -360934,6 +379921,8 @@ relationship: connects UBERON:0016477 ! zygomatic process of maxilla id: UBERON:0035881 name: ethmoidomaxillary suture def: "A suture between the orbital surface of the body of the maxilla with the orbital plate of the ethmoid bone." [http://medical-dictionary.thefreedictionary.com/ethmoidomaxillary+suture] +subset: human_subset +subset: mouse_subset synonym: "ethmoidomaxillary suture of skull" EXACT [FMA:52954] synonym: "sutura ethmoidomaxillaris" EXACT OMO:0003011 [FMA:TA] xref: FMA:52954 @@ -360948,6 +379937,8 @@ relationship: connects UBERON:0002397 ! maxilla id: UBERON:0035882 name: sphenomaxillary suture def: "An inconstant suture between the pterygoid process of the sphenoid bone and the body of the maxilla." [http://medical-dictionary.thefreedictionary.com/sphenomaxillary+suture] +subset: human_subset +subset: mouse_subset synonym: "sphenomaxillary suture of skull" EXACT [FMA:52957] synonym: "sutura sphenomaxillaris" EXACT OMO:0003011 [FMA:TA] xref: FMA:52957 @@ -360962,6 +379953,8 @@ relationship: connects UBERON:0004649 ! sphenoid bone pterygoid process id: UBERON:0035883 name: lacrimomaxillary suture def: "A suture between the lacrimal bone and the maxilla." [http://medical-dictionary.thefreedictionary.com/lacrimomaxillary+suture] +subset: human_subset +subset: mouse_subset synonym: "lacrimomaxillary suture of skull" EXACT [FMA:52961] synonym: "sutura lacrimomaxillaris" EXACT OMO:0003011 [FMA:TA] xref: FMA:52961 @@ -360976,6 +379969,8 @@ relationship: connects UBERON:0002397 ! maxilla id: UBERON:0035884 name: maxillary-premaxillary suture def: "A suture between the maxilla and premaxilla." [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2139, MGI:csmith, PMID:21538817] +subset: human_subset +subset: mouse_subset synonym: "incisive suture" RELATED [MGI:csmith] synonym: "maxillary-premaxillary incisive suture" EXACT [UBERON:cjm] synonym: "premaxillary suture" RELATED [MGI:csmith] @@ -360992,6 +379987,8 @@ property_value: taxon_notes "transient in humans" xsd:string [Term] id: UBERON:0035885 name: dorsal auditory area +subset: human_subset +subset: mouse_subset synonym: "AUDd" RELATED OMO:0003000 [MBA:1011] xref: MBA:1011 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361000,6 +379997,8 @@ relationship: part_of UBERON:0001393 {source="MBA"} ! auditory cortex [Term] id: UBERON:0035886 name: posterior parietal association areas +subset: human_subset +subset: mouse_subset synonym: "PTLp" RELATED OMO:0003000 [MBA:22] xref: MBA:22 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361008,6 +380007,8 @@ relationship: part_of UBERON:0001950 {source="MBA"} ! neocortex [Term] id: UBERON:0035890 name: postrhinal area +subset: human_subset +subset: mouse_subset synonym: "VISpor" RELATED OMO:0003000 [MBA:312782628] xref: MBA:312782628 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361016,6 +380017,8 @@ relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035892 name: primary visual area, layer 6a +subset: human_subset +subset: mouse_subset synonym: "VISp6a" RELATED OMO:0003000 [MBA:33] xref: MBA:33 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361024,6 +380027,8 @@ relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] id: UBERON:0035893 name: anteromedial visual area +subset: human_subset +subset: mouse_subset synonym: "VISam" RELATED OMO:0003000 [MBA:394] xref: MBA:394 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361032,6 +380037,8 @@ relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035894 name: anterolateral visual area +subset: human_subset +subset: mouse_subset synonym: "VISal" RELATED OMO:0003000 [MBA:402] xref: MBA:402 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361040,6 +380047,8 @@ relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035895 name: lateral visual area +subset: human_subset +subset: mouse_subset synonym: "VISl" RELATED OMO:0003000 [MBA:409] xref: MBA:409 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361048,6 +380057,8 @@ relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035897 name: posterolateral visual area +subset: human_subset +subset: mouse_subset synonym: "VISpl" RELATED OMO:0003000 [MBA:425] xref: MBA:425 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361056,6 +380067,8 @@ relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035900 name: posteromedial visual area +subset: human_subset +subset: mouse_subset synonym: "VISpm" RELATED OMO:0003000 [MBA:533] xref: MBA:533 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361064,6 +380077,8 @@ relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] id: UBERON:0035904 name: primary visual area, layer 4 +subset: human_subset +subset: mouse_subset synonym: "VISp4" RELATED OMO:0003000 [MBA:721] xref: MBA:721 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361072,6 +380087,8 @@ relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] id: UBERON:0035906 name: primary visual area, layer 5 +subset: human_subset +subset: mouse_subset synonym: "VISp5" RELATED OMO:0003000 [MBA:778] xref: MBA:778 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361080,6 +380097,8 @@ relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] id: UBERON:0035907 name: primary visual area, layer 2/3 +subset: human_subset +subset: mouse_subset synonym: "VISp2/3" RELATED OMO:0003000 [MBA:821] xref: MBA:821 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361088,6 +380107,8 @@ relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] id: UBERON:0035908 name: anterolateral visual area, layer 5 +subset: human_subset +subset: mouse_subset synonym: "VISal5" RELATED OMO:0003000 [MBA:233] xref: MBA:233 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361096,6 +380117,8 @@ relationship: part_of UBERON:0035894 {source="MBA"} ! anterolateral visual area [Term] id: UBERON:0035909 name: posteromedial visual area, layer 6a +subset: human_subset +subset: mouse_subset synonym: "VISpm6a" RELATED OMO:0003000 [MBA:257] xref: MBA:257 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361104,6 +380127,8 @@ relationship: part_of UBERON:0035900 {source="MBA"} ! posteromedial visual area [Term] id: UBERON:0035911 name: postrhinal area, layer 4 +subset: human_subset +subset: mouse_subset synonym: "VISpor4" RELATED OMO:0003000 [MBA:312782640] xref: MBA:312782640 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361112,6 +380137,8 @@ relationship: part_of UBERON:0035890 {source="MBA"} ! postrhinal area [Term] id: UBERON:0035912 name: rostrolateral visual area +subset: human_subset +subset: mouse_subset synonym: "VISrl" RELATED OMO:0003000 [MBA:417] xref: MBA:417 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361120,6 +380147,8 @@ relationship: part_of UBERON:0035886 {source="MBA"} ! posterior parietal associa [Term] id: UBERON:0035913 name: anteromedial visual area, layer 5 +subset: human_subset +subset: mouse_subset synonym: "VISam5" RELATED OMO:0003000 [MBA:433] xref: MBA:433 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361128,6 +380157,8 @@ relationship: part_of UBERON:0035893 {source="MBA"} ! anteromedial visual area [Term] id: UBERON:0035914 name: posteromedial visual area, layer 4 +subset: human_subset +subset: mouse_subset synonym: "VISpm4" RELATED OMO:0003000 [MBA:501] xref: MBA:501 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361136,6 +380167,8 @@ relationship: part_of UBERON:0035900 {source="MBA"} ! posteromedial visual area [Term] id: UBERON:0035915 name: lateral visual area, layer 4 +subset: human_subset +subset: mouse_subset synonym: "VISl4" RELATED OMO:0003000 [MBA:573] xref: MBA:573 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361144,6 +380177,8 @@ relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area [Term] id: UBERON:0035916 name: lateral visual area, layer 5 +subset: human_subset +subset: mouse_subset synonym: "VISl5" RELATED OMO:0003000 [MBA:613] xref: MBA:613 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361152,6 +380187,8 @@ relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area [Term] id: UBERON:0035917 name: dorsal auditory area, layer 4 +subset: human_subset +subset: mouse_subset synonym: "AUDd4" RELATED OMO:0003000 [MBA:678] xref: MBA:678 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361160,6 +380197,8 @@ relationship: part_of UBERON:0035885 {source="MBA"} ! dorsal auditory area [Term] id: UBERON:0035918 name: lateral visual area, layer 6a +subset: human_subset +subset: mouse_subset synonym: "VISl6a" RELATED OMO:0003000 [MBA:74] xref: MBA:74 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361168,6 +380207,8 @@ relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area [Term] id: UBERON:0035919 name: posterolateral visual area, layer 4 +subset: human_subset +subset: mouse_subset synonym: "VISpl4" RELATED OMO:0003000 [MBA:869] xref: MBA:869 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361176,6 +380217,8 @@ relationship: part_of UBERON:0035897 {source="MBA"} ! posterolateral visual area [Term] id: UBERON:0035920 name: rostrolateral area, layer 5 +subset: human_subset +subset: mouse_subset synonym: "VISrl5" RELATED OMO:0003000 [MBA:312782616] xref: MBA:312782616 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain @@ -361185,6 +380228,8 @@ relationship: part_of UBERON:0035912 {source="MBA"} ! rostrolateral visual area id: UBERON:0035922 name: intraculminate fissure of cerebellum def: "A fissure that divides the culmen lobule (lobules IV and V)." [MP:000999, PMID:1953602, UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "fissura intraculminalis" EXACT OMO:0003011 [FMA:TA] synonym: "ICF" RELATED OMO:0003000 [DHBA:266441729] synonym: "intraculminate fissure" EXACT [FMA:83737, HBA:9409] @@ -361209,6 +380254,8 @@ property_value: taxon_notes "The culmen lobule (lobules IV/V) is a single struct id: UBERON:0035924 name: radiation of corpus callosum def: "The spreading out of the fibers of the corpus callosum in the centrum semiovale of each cerebral hemisphere." [http://www.medilexicon.com/medicaldictionary.php?t=74819] +subset: human_subset +subset: mouse_subset synonym: "CCRD" RELATED OMO:0003000 [DHBA:12026] synonym: "corpus callosum radiation" EXACT [FMA:77693] synonym: "radiatio corporis callosi" EXACT OMO:0003011 [FMA:TA] @@ -361227,6 +380274,8 @@ relationship: part_of UBERON:0002336 {source="HBA"} ! corpus callosum [Term] id: UBERON:0035925 name: central sulcus of insula +subset: human_subset +subset: mouse_subset synonym: "central fissure of insula" EXACT [FMA:83779] synonym: "central fissure of insula" RELATED [NeuroNames:112] synonym: "central fissure of island" EXACT [FMA:83779] @@ -361255,6 +380304,8 @@ relationship: part_of UBERON:0002905 {source="HBA"} ! intralingual sulcus [Term] id: UBERON:0035926 name: preculminate fissure of cerebellum +subset: human_subset +subset: mouse_subset synonym: "fissura preculminalis" EXACT OMO:0003011 [FMA:TA] synonym: "PCF" RELATED OMO:0003000 [HBA:9408] synonym: "postcentral fissure of the cerebellum" RELATED [NeuroNames:652] @@ -361269,6 +380320,8 @@ is_a: UBERON:0003980 {source="FMA"} ! cerebellum fissure [Term] id: UBERON:0035927 name: sulcus of parietal lobe +subset: human_subset +subset: mouse_subset synonym: "parietal lobe sulci" EXACT OMO:0003004 [HBA:9370] synonym: "parietal lobe sulcus" EXACT [] synonym: "PLs" RELATED OMO:0003000 [HBA:9370] @@ -361282,6 +380335,8 @@ relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0035928 name: dorsolateral part of supraoptic nucleus +subset: human_subset +subset: mouse_subset synonym: "dorsolateral part of the supraoptic nucleus" RELATED [NeuroNames:3151] synonym: "pars dorsolateralis nuclei supraoptici" EXACT OMO:0003011 [FMA:TA] synonym: "supraoptic nucleus proper" RELATED [NeuroNames:3151] @@ -361296,6 +380351,8 @@ relationship: part_of UBERON:0001929 ! supraoptic nucleus [Term] id: UBERON:0035930 name: retro-olivary nucleus +subset: human_subset +subset: mouse_subset synonym: "nucleus retro-olivaris" EXACT OMO:0003011 [FMA:TA] synonym: "retro-olivary cell group" EXACT [FMA:72476] synonym: "RO" RELATED OMO:0003000 [DHBA:12467] @@ -361308,6 +380365,8 @@ is_a: UBERON:0007247 {source="FMA"} ! nucleus of superior olivary complex [Term] id: UBERON:0035931 name: sagittal stratum +subset: human_subset +subset: mouse_subset synonym: "sst" RELATED OMO:0003000 [DHBA:12082] xref: DHBA:12082 xref: FMA:277107 @@ -361320,6 +380379,8 @@ relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fib id: UBERON:0035932 name: anterior segment of paracentral lobule subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "anterior part of paracentral lobule" EXACT [FMA:273508] synonym: "medial segment of precentral gyrus" EXACT [FMA:273508] synonym: "paracentral lobule, anterior part" EXACT [HBA:4071] @@ -361337,6 +380398,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b id: UBERON:0035933 name: paracentral lobule def: "The junction of the precentral gyrus and postcentral gyrus on the medial surface of the cerebral cortex. It lies across the boundary between the frontal lobe and the parietal lobe." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?type=a&ID=404] +subset: human_subset +subset: mouse_subset synonym: "lobulus paracentralis" EXACT OMO:0003011 [FMA:TA] xref: BTO:0005601 xref: FMA:77534 @@ -361353,6 +380416,8 @@ relationship: surrounded_by UBERON:0008967 {source="FMA"} ! centrum semiovale id: UBERON:0035934 name: posterior segment of paracentral lobule subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "PCLp" RELATED OMO:0003000 [HBA:4125] synonym: "posterior part of paracentral lobule" EXACT [FMA:273511] xref: FMA:273511 @@ -361366,6 +380431,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0035935 name: Meyer's loop of optic radiation def: "Part of the optic radiation which sweeps back on itself into the temporal lobe, just lateral to the temporal horn of the lateral ventricle." [http://radiopaedia.org/articles/meyer-loop] +subset: human_subset +subset: mouse_subset synonym: "inferior optic radiation" EXACT [NeuroNames:1466] synonym: "Meyer's loop" EXACT [] synonym: "or-lp" RELATED OMO:0003000 [HBA:265505214] @@ -361381,6 +380448,8 @@ property_value: external_ontology_notes "in FMA this is disjoint from radiation id: UBERON:0035937 name: arcuate fasciculus def: "The arcuate fasciculus (Latin, curved bundle) is the neural pathway connecting the posterior part of the temporoparietal junction with the frontal cortex in the brain and is now considered as part of the Superior longitudinal fasciculus." [Wikipedia:Arcuate_fasciculus] +subset: human_subset +subset: mouse_subset synonym: "AF" RELATED OMO:0003000 [DHBA:10569] synonym: "arcuate fascicle" EXACT [FMA:276650] synonym: "arcuate fascicle" RELATED [Wikipedia:Arcuate_fasciculus] @@ -361401,6 +380470,8 @@ relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fib [Term] id: UBERON:0035938 name: amiculum of inferior olive +subset: human_subset +subset: mouse_subset synonym: "ami" RELATED OMO:0003000 [DHBA:12728] synonym: "amiculum of olive" EXACT [FMA:72611] synonym: "amiculum of the olive" EXACT [DHBA:12728] @@ -361419,6 +380490,8 @@ relationship: part_of UBERON:0019262 {source="HBA"} ! white matter of myelenceph id: UBERON:0035939 name: amiculum def: "A dense surrounding coat of white fibers, as the sheath of the inferior olive and of the dentate nucleus." [http://medical-dictionary.thefreedictionary.com/amicula] +subset: human_subset +subset: mouse_subset synonym: "amicula" RELATED OMO:0003004 [] xref: FMA:83870 xref: RadLex:RID6708 @@ -361427,6 +380500,8 @@ is_a: UBERON:0002316 ! white matter [Term] id: UBERON:0035940 name: central medullary reticular nuclear complex +subset: human_subset +subset: mouse_subset synonym: "central group (medullary reticular formation)" EXACT [FMA:70663] synonym: "central group (medullary reticular formation)" RELATED [NeuroNames:729] synonym: "central medullary reticular complex" EXACT [FMA:70663] @@ -361446,6 +380521,8 @@ relationship: part_of UBERON:0002559 {source="HBA"} ! medullary reticular format id: UBERON:0035941 name: Kimura membrane def: "The thickening of the lower surface of the tectorial membrane into which the hair bundles of the outer hair cells are embedded." [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2141, https://github.com/obophenotype/uberon/issues/1200, MGI:smith, PMID:18797289] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 {source="cjm"} ! acellular membrane relationship: part_of UBERON:0002233 ! tectorial membrane of cochlea @@ -361454,6 +380531,8 @@ relationship: part_of UBERON:0002233 ! tectorial membrane of cochlea id: UBERON:0035942 name: space between upper and lower jaws def: "The space between the upper jaw skeleton and lower jaw skeleton (including teeth) that is formed when when biting." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "bite" RELATED [] is_a: UBERON:0000464 ! anatomical space relationship: adjacent_to UBERON:0003277 ! skeleton of upper jaw @@ -361466,6 +380545,8 @@ id: UBERON:0035943 name: life cycle temporal boundary def: "A temporal boundary connecting two life cycle stages that follow in immediate succession. A temporal boundary is an abstract, instantaneous entity." [https://orcid.org/0000-0002-6601-2165] subset: common_anatomy +subset: human_subset +subset: mouse_subset subset: upper_level is_a: UBERON:0000000 ! processual entity relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae @@ -361477,6 +380558,8 @@ id: UBERON:0035944 name: life-death temporal boundary def: "A life cycle temporal boundary that marks the end of the life cycle of the organism." [https://github.com/obophenotype/uberon/issues/1172, https://orcid.org/0000-0002-6601-2165] subset: common_anatomy +subset: human_subset +subset: mouse_subset synonym: "death" RELATED INCONSISTENT [] synonym: "end of life" RELATED [] synonym: "end of life cycle" EXACT [] @@ -361496,6 +380579,8 @@ id: UBERON:0035945 name: start of life cycle def: "A life cycle temporal boundary that marks the start of the life cycle of the organism." [https://github.com/obophenotype/uberon/issues/1172, https://orcid.org/0000-0002-6601-2165] subset: common_anatomy +subset: human_subset +subset: mouse_subset is_a: UBERON:0035943 ! life cycle temporal boundary intersection_of: UBERON:0035943 ! life cycle temporal boundary intersection_of: starts UBERON:0000104 ! life cycle @@ -361509,6 +380594,8 @@ relationship: starts UBERON:0000104 ! life cycle id: UBERON:0035946 name: start of neonate stage def: "A life cycle temporal boundary that marks the start of the neonate stage of the organism." [https://github.com/obophenotype/uberon/issues/1204, https://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "birth" RELATED INCONSISTENT [] synonym: "moment of birth" EXACT [] synonym: "time of birth" EXACT [] @@ -361531,6 +380618,8 @@ consider: UBERON:0001893 id: UBERON:0035956 name: epididymal lumen def: "The lumen of the epididymis." [GOC:DOS, https://github.com/obophenotype/uberon/issues/1209] +subset: human_subset +subset: mouse_subset synonym: "epididymis lumen" EXACT [FMA:18274] synonym: "lumen of epididymis" EXACT [FMA:18274] xref: FMA:18274 @@ -361546,6 +380635,8 @@ relationship: part_of UBERON:0001301 ! epididymis id: UBERON:0035957 name: antotic pillar def: "The posteriormost orbital pillar, in front of the otic capsule." [ISBN:978-0226870137] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0035959 ! orbital pillar @@ -361555,6 +380646,8 @@ relationship: part_of UBERON:0005745 ! optic foramen id: UBERON:0035958 name: preoptic pillar def: "The anteriormost orbital pillar, in front of the otic capsule." [ISBN:978-0226870137] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0035959 ! orbital pillar @@ -361564,6 +380657,8 @@ relationship: part_of UBERON:0005745 ! optic foramen id: UBERON:0035959 name: orbital pillar def: "A skeletal projection in the chondrocranium that developmentally connects the orbital cartilage and may develop into bone regions." [ISBN:978-0226870137, UBERON:cjm] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0002241 ! chondrocranium @@ -361589,6 +380684,8 @@ consider: UBERON:0014479 id: UBERON:0035962 name: supravaginal part of cervix def: "Supravaginal portion of cervix: the part of the cervix uteri that does not protrude into the vagina." [BTO:0001851, Dorlands_Medical_Dictionary:MerckSource] +subset: human_subset +subset: mouse_subset synonym: "portio supravaginalis cervicis" EXACT OMO:0003011 [FMA:TA] xref: BTO:0001851 xref: FMA:77055 @@ -361601,6 +380698,8 @@ relationship: part_of UBERON:0000002 {source="FMA"} ! uterine cervix id: UBERON:0035963 name: epithelial lining fluid def: "Epithelial lining fluid forms a thin fluid layer that covers the mucosa of the alveoli, the small airways, and the large airways." [BTO:0005566, PMID:21948403] +subset: human_subset +subset: mouse_subset synonym: "ELF" RELATED [BTO:0005566] xref: BTO:0005566 xref: FMA:276456 @@ -361612,6 +380711,8 @@ relationship: produced_by UBERON:0035967 ! alveolar mucosa id: UBERON:0035964 name: promontory of tympanic cavity def: "The promontory of the tympanic cavity, better known as the cochlear promontory is a rounded hollow prominence, formed by the projection outward of the first turn of the cochlea. It is placed between the fenestrae, and is furrowed on its surface by small grooves, for the lodgement of branches of the tympanic plexus. A minute spicule of bone frequently connects the promontory to the pyramidal eminence." [Wikipedia:Promontory_of_tympanic_cavity] +subset: human_subset +subset: mouse_subset synonym: "promontorium" RELATED [Wikipedia:Promontory_of_tympanic_cavity] synonym: "promontorium tympani" EXACT OMO:0003011 [FMA:TA] synonym: "promontory of the tympanic cavity" RELATED [Wikipedia:Promontory_of_tympanic_cavity] @@ -361625,6 +380726,8 @@ relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0035965 name: wall of blood vessel +subset: human_subset +subset: mouse_subset synonym: "blood vessel wall" EXACT [FMA:67473] synonym: "vascular wall" RELATED [BTO:0004378] xref: BTO:0004378 @@ -361642,6 +380745,8 @@ id: UBERON:0035966 name: scleral lamina cribrosa def: "The perforated part of the sclera through which pass the axons of the retinal ganglion cells." [BTO:0004277, Dorlands_Medical_Dictionary:MerckSource] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lamina cribrosa of sclera" EXACT [FMA:58371] synonym: "lamina cribrosa of sclera" RELATED [BTO:0004277] synonym: "lamina cribrosa sclerae" EXACT OMO:0003011 [FMA:TA] @@ -361657,6 +380762,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0035967 name: alveolar mucosa def: "The mucous membrane apical to the attached gingiva." [BTO:0004046, http://www.biology-online.org/dictionary/] +subset: human_subset +subset: mouse_subset xref: BTO:0004046 xref: FMA:289360 is_a: UBERON:0003729 ! mouth mucosa @@ -361667,6 +380774,8 @@ relationship: part_of UBERON:0003729 {source="BTO"} ! mouth mucosa id: UBERON:0035968 name: bulboid corpuscle def: "A receptor in the transitional zone between mucous membrane and skin." [ISBN:9780849388118, Wikipedia:Bulboid_corpuscle] +subset: human_subset +subset: mouse_subset synonym: "bulboid corpuscles" RELATED [Wikipedia:Bulboid_corpuscle] synonym: "end bulbs" RELATED [Wikipedia:Bulboid_corpuscle] synonym: "end bulbs of krause" RELATED [Wikipedia:Bulboid_corpuscle] @@ -361685,6 +380794,8 @@ property_value: curator_notes "Some investigators are doubtful to its existence; id: UBERON:0035969 name: encapsulated tactile receptor def: "A tacile mechanoreceptor that lacks a capsule." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "encapsulated nerve ending" EXACT [FMA:83995] xref: FMA:83995 is_a: UBERON:0035016 {source="FMA"} ! tactile mechanoreceptor @@ -361693,6 +380804,8 @@ is_a: UBERON:0035016 {source="FMA"} ! tactile mechanoreceptor id: UBERON:0035970 name: calcar avis of the lateral ventricle def: "On the medial wall of the posterior cornu of the lateral ventricle is a longitudinal eminence, the calcar avis (hippocampus minor), which is an involution of the ventricular wall produced by the calcarine fissure. It is sometimes visible on ultrasonogram." [Wikipedia:Calcar_avis] +subset: human_subset +subset: mouse_subset synonym: "CalA" RELATED OMO:0003000 [DHBA:12095] synonym: "calcar" RELATED [BTO:0004691] synonym: "calcar avis" RELATED [BTO:0004691] @@ -361718,6 +380831,8 @@ relationship: part_of UBERON:0002421 {source="BTO"} ! hippocampal formation id: UBERON:0035971 name: postsubiculum def: "Division of subicular cortex characterized by projections from the anterodorsal thalamic nucleus and to a lesser extent the anteroventral nucleus, bordered ventrally and laterally by the presubiculum and dorsally and medially by the retrosplenial granular a cortex.. The border is characterized by an abrupt change in the cyto- and chemoarchitecture." [NLX:144245] +subset: human_subset +subset: mouse_subset synonym: "POST" RELATED OMO:0003000 [MBA:1037] synonym: "postsubicular cortex" RELATED [NLX:144245] xref: MBA:1037 @@ -361730,6 +380845,8 @@ relationship: part_of UBERON:0022230 {source="MBA"} ! retrohippocampal region id: UBERON:0035972 name: interanterodorsal nucleus of the thalamus def: "A group of nerve cells that bridges the midline of the thalamus between the anterodorsal nucleus of the thalamus of the left and right sides. According to Crosby (1962), it is more developed and consistently present in rodents than in primates (adapted from Brain Info)." [NLX:144468] +subset: human_subset +subset: mouse_subset synonym: "IAD" RELATED OMO:0003000 [MBA:1113] synonym: "interanterodorsal nucleus of thalamus" RELATED [NLX:144468] synonym: "interanterodorsal nucleus of the thalamus" RELATED [NeuroNames:1273] @@ -361748,6 +380865,8 @@ relationship: part_of UBERON:0002788 {source="MBA"} ! anterior nuclear group id: UBERON:0035973 name: nucleus incertus def: "Distinct cell group in caudoventral regions of the pontine periventricular gray, adjacent to the ventromedial border of the caudal dorsal tegmental nucleus." [NLX:144477] +subset: human_subset +subset: mouse_subset synonym: "central Gray pars 0" RELATED [NLX:144477] synonym: "central Gray part alpha" RELATED [NLX:144477] synonym: "charles Watson. - 5th ed.)" RELATED [NLX:144477] @@ -361768,6 +380887,8 @@ relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:0035974 name: anteroventral preoptic nucleus +subset: human_subset +subset: mouse_subset synonym: "anteroventral preoptic nuclei" RELATED OMO:0003004 [NLX:17240] synonym: "AVP" RELATED OMO:0003000 [MBA:263] xref: MBA:263 @@ -361780,6 +380901,8 @@ relationship: part_of UBERON:0001928 {source="NIFSTD"} ! preoptic area [Term] id: UBERON:0035975 name: intergeniculate leaflet of the lateral geniculate complex +subset: human_subset +subset: mouse_subset synonym: "IGL" RELATED OMO:0003000 [MBA:27] synonym: "intergeniculate leaflet of the lateral geniculate complex" RELATED [NeuroNames:1956] synonym: "intergeniculate leaflet, lateral geniculate complex" RELATED [NeuroNames:1956] @@ -361794,6 +380917,8 @@ relationship: part_of UBERON:0001926 {source="NIFSTD"} ! lateral geniculate body id: UBERON:0035976 name: accessory abducens nucleus def: "A small cluster of neurons in the pontine reticular formation in some mammals, containing the majority of motoneurons innervating thenretractor bulbi muscles of the eye." [NLX:144454] +subset: human_subset +subset: mouse_subset synonym: "ACVI" RELATED OMO:0003000 [MBA:568] xref: MBA:568 xref: neuronames:1860 @@ -361806,6 +380931,8 @@ relationship: part_of UBERON:0002573 {source="nlx-text-mined"} ! pontine reticul id: UBERON:0035977 name: bed nucleus of the accessory olfactory tract def: "A group of cells near the surface of the brain between the supraoptic nucleus and the cortical amygdalar nucleus in the rat ( Swanson-1998 ) and the mouse ( Paxinos-2001 ). It is one of five subdivisions of the medial amygdalar nucleus." [NeuroNames:1179] +subset: human_subset +subset: mouse_subset synonym: "accessory olfactory formation" RELATED [NeuroNames:1179] synonym: "BA" RELATED OMO:0003000 [MBA:292] synonym: "bed nucleus accessory olfactory tract (Scalia-Winans)" RELATED [NeuroNames:1179] @@ -361821,6 +380948,8 @@ relationship: part_of UBERON:0002892 ! medial amygdaloid nucleus id: UBERON:0035999 name: dopaminergic cell groups def: "Collections of neurons in the central nervous system that have been demonstrated by histochemical fluorescence to contain the neurotransmitter dopamine ( Fuxe-1970 )." [NeuroNames:3138] +subset: human_subset +subset: mouse_subset synonym: "DA cell groups" RELATED [NeuroNames:3138] synonym: "dopaminergic cell groups" RELATED [NeuroNames:3138] synonym: "dopaminergic nuclei" RELATED [NeuroNames:3138] @@ -361831,6 +380960,8 @@ relationship: composed_primarily_of CL:0000700 ! dopaminergic neuron [Term] id: UBERON:0036000 name: A8 dopaminergic cell group +subset: human_subset +subset: mouse_subset synonym: "A8 cell group" RELATED [NeuroNames:1061] synonym: "A8 dopamine cells" RELATED [NeuroNames:1061] synonym: "dopaminergic group A8" RELATED [NeuroNames:1061] @@ -361841,6 +380972,8 @@ is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036001 name: A14 dopaminergic cell group +subset: human_subset +subset: mouse_subset synonym: "A14 cell group" RELATED [NeuroNames:1200] synonym: "A14 dopamine cells" RELATED [NeuroNames:1200] synonym: "cell group A14" RELATED [NeuroNames:1200] @@ -361851,6 +380984,8 @@ is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036002 name: A15 dopaminergic cell group +subset: human_subset +subset: mouse_subset synonym: "A15 cell group" RELATED [NeuroNames:1798] synonym: "dopaminergic group A15" RELATED [NeuroNames:1798] xref: neuronames:1798 @@ -361859,6 +380994,8 @@ is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036003 name: A9 dopaminergic cell group +subset: human_subset +subset: mouse_subset synonym: "A9 cell group" RELATED [NeuroNames:1811] synonym: "dopaminergic group A9" RELATED [NeuroNames:1811] xref: neuronames:1811 @@ -361868,6 +381005,8 @@ is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036004 name: A17 dopaminergic cell group +subset: human_subset +subset: mouse_subset synonym: "A17 cell group" RELATED [NeuroNames:1832] synonym: "dopaminergic group A17" RELATED [NeuroNames:1832] xref: neuronames:1832 @@ -361876,6 +381015,8 @@ is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036005 name: A10 dopaminergic cell group +subset: human_subset +subset: mouse_subset synonym: "A10 cell group" RELATED [NeuroNames:1835] synonym: "dopaminergic group A10" RELATED [NeuroNames:1835] xref: neuronames:1835 @@ -361885,6 +381026,8 @@ is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036006 name: A11 dopaminergic cell group +subset: human_subset +subset: mouse_subset synonym: "A11 cell group" RELATED [NeuroNames:1850] synonym: "A11 dopamine cells" RELATED [NeuroNames:1850] synonym: "dopaminergic group A11" RELATED [NeuroNames:1850] @@ -361895,6 +381038,8 @@ is_a: UBERON:0035999 ! dopaminergic cell groups id: UBERON:0036007 name: A13 dopaminergic cell group def: "A group of cells that fluoresce for dopamine and are distributed in clusters that, in the primate, are ventral and medial to the mammillothalamic tract of the hypothalamus; a few extend into the reuniens nucleus of the thalamus (Felten-1983). In the mouse A13 is located ventral to the mammillothalamic tract of the thalamus in the zona incerta (adapted from Brain Info)." [NLX:91101] +subset: human_subset +subset: mouse_subset synonym: "A13" RELATED OMO:0003000 [MBA:796] synonym: "A13 cell group" RELATED [NeuroNames:1851] synonym: "A13 dopamine cells" RELATED [NeuroNames:1851] @@ -361909,6 +381054,8 @@ relationship: part_of UBERON:0001907 {source="MBA"} ! zona incerta [Term] id: UBERON:0036008 name: A16 dopaminergic cell group +subset: human_subset +subset: mouse_subset synonym: "A16 cell group" RELATED [NeuroNames:1867] synonym: "dopaminergic group A16" RELATED [NeuroNames:1867] xref: neuronames:1867 @@ -361917,6 +381064,8 @@ is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036009 name: A12 dopaminergic cell group +subset: human_subset +subset: mouse_subset synonym: "A12 cell group" RELATED [NeuroNames:1880] synonym: "A12 dopamine cells" RELATED [NeuroNames:1880] synonym: "dopaminergic group A12" RELATED [NeuroNames:1880] @@ -361926,6 +381075,8 @@ is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036010 name: Aaq dopaminergic cell group +subset: human_subset +subset: mouse_subset synonym: "Aaq cell group" RELATED [NeuroNames:1889] synonym: "dopaminergic group Aaq" RELATED [NeuroNames:1889] xref: neuronames:1889 @@ -361934,6 +381085,8 @@ is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036011 name: telencephalic dopaminergic cell group +subset: human_subset +subset: mouse_subset synonym: "telencephalic DA cell group" RELATED [NeuroNames:1770] synonym: "telencephalic DA neurons" RELATED [NeuroNames:1770] synonym: "telencephalic dopamine cells" RELATED [NeuroNames:1770] @@ -361944,6 +381097,8 @@ is_a: UBERON:0035999 ! dopaminergic cell groups [Term] id: UBERON:0036012 name: nucleus of the brachium of the inferior colliculus +subset: human_subset +subset: mouse_subset synonym: "brachial nucleus of the inferior colliculus" RELATED [NeuroNames:1112] synonym: "BrC" RELATED OMO:0003000 [HBA:9483] synonym: "NB" RELATED OMO:0003000 [MBA:580] @@ -361960,6 +381115,8 @@ relationship: part_of UBERON:0002314 {source="HBA"} ! midbrain tectum id: UBERON:0036013 name: intergluteal cleft def: "The line that divided the gluteal regions of the body." [https://github.com/obophenotype/uberon/issues/1216] +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "anal cleft" EXACT [FMA:20234] synonym: "crena analis" EXACT OMO:0003011 [FMA:TA] @@ -361980,6 +381137,8 @@ id: UBERON:0036014 name: gluteal sulcus def: "A horizontal crease formed by the inferior aspect of the buttocks and the posterior upper leg." [https://github.com/obophenotype/uberon/issues/1216, Wikipedia:Gluteal_sulcus] comment: Children with developmental dysplasia of the hips are born with uneven gluteal folds and can be diagnosed with physical examination and sonogram +subset: human_subset +subset: mouse_subset subset: pheno_slim synonym: "gluteal crease" RELATED [Wikipedia:Gluteal_sulcus] synonym: "gluteal fold" EXACT [FMA:20233, Wikipedia:Gluteal_sulcus] @@ -362022,6 +381181,8 @@ relationship: in_taxon NCBITaxon:7434 ! Aculeata id: UBERON:0036017 name: regurgitated substance def: "A bodily fluid consisting of the contents of the digestive tract expulsed through the anterior portion of the digestive tract." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "regurgitate" RELATED [] is_a: UBERON:0000463 ! organism substance relationship: in_taxon NCBITaxon:6072 ! Eumetazoa @@ -362047,6 +381208,8 @@ relationship: in_taxon NCBITaxon:29132 ! Castoridae [Term] id: UBERON:0036043 name: paravermic lobule X +subset: human_subset +subset: mouse_subset synonym: "paravermis, flocculonodular lobe portion" RELATED [DHBA:12389] synonym: "PV-X" RELATED OMO:0003000 [HBA:4730] xref: DHBA:12389 @@ -362058,6 +381221,8 @@ relationship: part_of UBERON:0001063 {source="HBA"} ! flocculus [Term] id: UBERON:0036044 name: cerebellum vermis lobule VIIAf +subset: human_subset +subset: mouse_subset synonym: "CbVIIa1" RELATED OMO:0003000 [DHBA:12846] synonym: "lobule VIIAf/crus I (folium and superior semilunar lobule)" EXACT [DHBA:12846] synonym: "VIIAf" EXACT OMO:0003000 [HBA:4706] @@ -362070,12 +381235,16 @@ relationship: part_of UBERON:0004009 {source="HBA"} ! cerebellum posterior vermi [Term] id: UBERON:0036063 name: quadrangular lobule +subset: human_subset +subset: mouse_subset xref: FMA:272300 is_a: UBERON:0004003 {source="FMA"} ! cerebellum hemisphere lobule [Term] id: UBERON:0036065 name: cerebellum vermis lobule VIIAt +subset: human_subset +subset: mouse_subset synonym: "CbVIIa2" RELATED OMO:0003000 [DHBA:12847] synonym: "lobule VIIAt/crus II (tuber and inferior semilunar lobule)" EXACT [DHBA:12847] synonym: "VIIAt" EXACT OMO:0003000 [HBA:4707] @@ -362090,6 +381259,8 @@ relationship: part_of UBERON:0004009 {source="HBA"} ! cerebellum posterior vermi id: UBERON:0036066 name: inferior endocardial cushion def: "The endocardial cushion that forms on the ventral surface of the AV canal." [GOC:rl, https://embryology.med.unsw.edu.au/embryology/index.php/Intermediate_-_Atrial_Ventricular_Septation, https://github.com/obophenotype/uberon/issues/1226] +subset: human_subset +subset: mouse_subset synonym: "ventral endocardial cushion" EXACT [] is_a: UBERON:0002062 ! endocardial cushion @@ -362097,6 +381268,8 @@ is_a: UBERON:0002062 ! endocardial cushion id: UBERON:0036067 name: superior endocardial cushion def: "The endocardial cushion that forms on the dorsal surface of the AV canal." [GOC:rl, https://embryology.med.unsw.edu.au/embryology/index.php/Intermediate_-_Atrial_Ventricular_Septation, https://github.com/obophenotype/uberon/issues/1226] +subset: human_subset +subset: mouse_subset synonym: "dorsal endocardial cushion" EXACT [] is_a: UBERON:0002062 ! endocardial cushion @@ -362104,6 +381277,8 @@ is_a: UBERON:0002062 ! endocardial cushion id: UBERON:0036068 name: subglottis def: "The lower portion of the larynx, extending from just beneath the vocal cords down to the top of the trachea." [https://orcid.org/0000-0002-6490-7723, MP:0030000, Wikipedia:Subglottis] +subset: human_subset +subset: mouse_subset synonym: "infraglottic part of larynx" EXACT [FMA:55477] synonym: "subglottic larynx" EXACT [FMA:55477] synonym: "subglottic region" EXACT [MP:0030000] @@ -362119,6 +381294,8 @@ property_value: function_notes "the structures in the subglottis are implicated id: UBERON:0036069 name: tracheoesophageal fold def: "One of two longitudinal ridges that develop caudal to the pharynx and fuses to give rise to the tracheoesophageal septum." [https://web.duke.edu/anatomy/embryology/gi/gi.html, UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "esophagotracheal fold" EXACT [UBERON:cjm] xref: NCIT:C34315 is_a: UBERON:0002050 ! embryonic structure @@ -362129,6 +381306,8 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:0036070 name: tracheoesophageal septum def: "The tracheoesophageal septum is formed from the tracheoesophageal folds which fuse in the midline to form a structure called tracheoesophageal septum. It divides the esophagus from the trachea. It divides the foregut tube into the laryngotracheal tube ventrally and esophagus dorsally. Developmental abnormalities can lead to a tracheoesophageal fistula." [Wikipedia:Tracheoesophageal_septum] +subset: human_subset +subset: mouse_subset synonym: "esophagotracheal septum" EXACT [UBERON:cjm] synonym: "tracheoesophageal ridges" RELATED [Wikipedia:Tracheoesophageal_septum] xref: NCIT:C34316 @@ -362158,6 +381337,8 @@ relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0036072 name: respiratory primordium epithelium +subset: human_subset +subset: mouse_subset xref: EHDAA2:0004070 is_a: UBERON:0004185 ! endodermal part of digestive tract is_a: UBERON:0005911 ! endo-epithelium @@ -362172,6 +381353,8 @@ relationship: part_of UBERON:0008947 ! respiratory primordium [Term] id: UBERON:0036073 name: respiratory primordium mesenchyme +subset: human_subset +subset: mouse_subset synonym: "respiratory primordium associated mesenchyme" EXACT [EHDAA2:0004071] xref: EHDAA2:0004071 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure @@ -362186,6 +381369,8 @@ id: UBERON:0036074 name: vein of vestibular aqueduct def: "A vein that leaves the vestibule through an individual bone canal running parallel to the vestibular aqueduct up to the dura of the posterior side of the petrosa in the area of the endolymphatic sac. It then opens in the inferior petrosal sinus or the jugular bulb. The vein receives other branches from the bone, dura and sac." [PMID:42339] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "vena aqueductus vestibuli" EXACT OMO:0003011 [FMA:TA] synonym: "vestibular aqueduct vein" EXACT [FMA:52367] xref: FMA:52367 @@ -362200,6 +381385,8 @@ relationship: tributary_of UBERON:0007160 {source="FMA"} ! inferior petrosal sin id: UBERON:0036143 name: meningeal branch of mandibular nerve def: "The meningeal branch of the mandibular nerve (recurrent branch, nervus spinosus) is a branch of the mandibular nerve that supplies the dura mater." [Wikipedia:Meningeal_branch_of_the_mandibular_nerve] +subset: human_subset +subset: mouse_subset synonym: "nervus spinosus" EXACT OMO:0003011 [FMA:TA] synonym: "nervus spinosus" RELATED [Wikipedia:Meningeal_branch_of_the_mandibular_nerve] synonym: "ramus meningeus (Nervus mandibularis)" EXACT [FMA:53047] @@ -362216,6 +381403,8 @@ id: UBERON:0036144 name: incisive duct def: "An infrequent rudimentary duct, or protrusion of the mucous membrane into the incisive canal, on either side of the anterior extremity of the nasal crest." [http://medical-dictionary.thefreedictionary.com/incisive+duct] comment: Taxon notes notes: In domestic mammals the Ductus incisivus is considerably better developed than in man. It is not accommodated in a Canalis incisivus, as in man, but in the Fissura palatina[NOMINA ANATOMICA VETERINARIA (2005)] +subset: human_subset +subset: mouse_subset synonym: "ductus incisivus" EXACT OMO:0003011 [FMA:TA] xref: FMA:77282 is_a: UBERON:0013686 {source="FMA"} ! anatomical conduit space @@ -362226,6 +381415,8 @@ property_value: taxon_notes "horses exhibit Flehmen response but do not have an id: UBERON:0036145 name: glymphatic system def: "Macroscopic waste clearance system that utilizes a unique system of perivascular tunnels, formed by astroglial cells, to promote efficient elimination of soluble proteins and metabolites from the central nervous system." [DOI:10.1007/s11064-015-1581-6, https://github.com/obophenotype/uberon/issues/1260, MGI:sbello] +subset: human_subset +subset: mouse_subset xref: EMAPA:37872 {source="MA:th"} xref: MESH:D000077502 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0000467 ! anatomical system @@ -362236,6 +381427,8 @@ property_value: function_notes "hypothesized to be have roles such as waste clea id: UBERON:0036146 name: cardiopharyngeal field def: "An region of the mesoderm that includes anterior lateral mesoderm of the first heart field plus contiguous pharyngeal mesoderm that gives rise to second-heart-field-derived regions of the heart and branchiomeric muscles." [http://www.nature.com/nature/journal/v520/n7548/full/nature14435.html#bx1, https://orcid.org/0000-0003-3308-6245] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -362267,6 +381460,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/1264" xsd id: UBERON:0036149 name: suprapubic skin def: "Area of skin in the hypoastric region of the abdomen." [https://github.com/obophenotype/uberon/issues/1272] +subset: human_subset +subset: mouse_subset synonym: "hypogastric skin" RELATED [] is_a: UBERON:0001416 ! skin of abdomen intersection_of: UBERON:0000014 ! zone of skin @@ -362277,6 +381472,8 @@ relationship: part_of UBERON:0013203 ! hypogastrium id: UBERON:0036150 name: skin appendage follicle def: "An organ subunit in the skin that gives rise to cutaneous appendage." [https://github.com/obophenotype/uberon/issues/1266, UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "cutaneous appendage follicle" EXACT [] synonym: "follicle" BROAD [] synonym: "skin follicle" EXACT [] @@ -362296,6 +381493,8 @@ relationship: part_of UBERON:0000014 ! zone of skin id: UBERON:0036151 name: diffuse placenta def: "A placenta in which the chorionic sac meets the uterine endometrium over its entire surface. The villi of the chorion are distributed evenly throughout the surface of the chorion, and they extend into processes in the uterine endometrium." [http://www.luckyhit.net/goats001.htm, http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001987 ! placenta relationship: present_in_taxon NCBITaxon:35497 ! Suina relationship: present_in_taxon NCBITaxon:9788 ! Equidae @@ -362306,6 +381505,8 @@ property_value: taxon_notes "horses, pigs" xsd:string id: UBERON:0036152 name: cotyledonary placenta def: "A placenta in which the villi clumped together into circular patches called cotyledons. The fetal cotyledon meets with maternal regions called caruncles to form the placentome where maternal-fetal exchanges take place." [http://www.luckyhit.net/goats001.htm, http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001987 ! placenta relationship: present_in_taxon NCBITaxon:9845 ! Ruminantia property_value: structure_notes "Multiple, discrete areas of attachment called cotyledons are formed by interaction of patches of allantochorion with endometrium. The fetal portions of this type of placenta are called cotyledons, the maternal contact sites (caruncles), and the cotyledon-caruncle complex a placentome" xsd:string @@ -362315,6 +381516,8 @@ property_value: taxon_notes "common to ungulates such as cows, deer, goat, and g id: UBERON:0036153 name: zonary placenta def: "A placenta in which the chorionic villi have aggregated to form a broad band that circles about the center of the chorion. Such zones may be complete circles (such as those in dogs and cats) or incomplete (such as those in bears and seals). It is thought that zonary placentae form from diffuse placentae in which the villi at the ends regress, leaving only those in the center to function. At the edges of the zonary placenta is the hemophagous organ, which is green. The color is due to the degradation of hemoglobin into bilivirdin. This green organ provides iron for the developing fetus." [http://www.luckyhit.net/goats001.htm, http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001987 ! placenta relationship: present_in_taxon NCBITaxon:33554 ! Carnivora property_value: structure_notes "The placenta takes the form of a complete or incomplete band of tissue surrounding the fetus" xsd:string @@ -362324,6 +381527,8 @@ property_value: taxon_notes "characteristic of carnivores" xsd:string id: UBERON:0036154 name: discoid placenta def: "A placenta in which part of the chorion remains smooth, while the other part interacts with the endometrium to form the placenta. The maternal blood cells are in direct contact with the fetal chorion." [http://www.luckyhit.net/goats001.htm, http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001987 ! placenta relationship: present_in_taxon NCBITaxon:314146 ! Euarchontoglires relationship: present_in_taxon NCBITaxon:9362 ! Eulipotyphla @@ -362334,6 +381539,8 @@ property_value: taxon_notes "seen in numerous groups -- humans, mice, insectivor id: UBERON:0036161 name: epitheliochorial placenta def: "A placenta in which all three maternal layers are retained." [http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001987 ! placenta relationship: present_in_taxon NCBITaxon:9845 ! Ruminantia property_value: taxon_notes "Horses, swine, ruminants" xsd:string @@ -362342,6 +381549,8 @@ property_value: taxon_notes "Horses, swine, ruminants" xsd:string id: UBERON:0036162 name: endotheliochorial placenta def: "A placenta in which the only maternal layer retained is the uterine endothelium." [http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001987 ! placenta relationship: present_in_taxon NCBITaxon:33554 ! Carnivora property_value: taxon_notes "dogs, cats" xsd:string @@ -362350,6 +381559,8 @@ property_value: taxon_notes "dogs, cats" xsd:string id: UBERON:0036163 name: hemochorial placenta def: "A placenta in which no maternal layers are retained." [http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001987 ! placenta relationship: present_in_taxon NCBITaxon:314146 ! Euarchontoglires property_value: taxon_notes "humans, rodents" xsd:string @@ -362358,6 +381569,8 @@ property_value: taxon_notes "humans, rodents" xsd:string id: UBERON:0036164 name: ambient gyrus def: "A rostral part of the parahippocampal gyrus." [NeuroNames:2072] +subset: human_subset +subset: mouse_subset synonym: "AG" RELATED OMO:0003000 [DHBA:12166] synonym: "ambiens gyrus" EXACT [DHBA:12166] synonym: "gyrus ambiens" EXACT OMO:0003011 [DHBA:12166] @@ -362373,6 +381586,8 @@ id: UBERON:0036167 name: Sattler's layer def: "Sattler's layer is layer of medium diameter blood vessels of the choroid." [Wikipedia:Sattler%27s_layer] comment: Some authors consider the vascular region of the choroid as being two separate layers, namely the Sattler's and Haller's layers, and some consider the lamina fusca as being either of scleral or choroidal origin. +subset: human_subset +subset: mouse_subset xref: Wikipedia:Sattler%27s_layer is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0010313 ! neural crest-derived structure @@ -362382,6 +381597,8 @@ relationship: part_of UBERON:0013399 ! blood vessel layer of choroid id: UBERON:0036168 name: Haller's layer comment: Some authors consider the vascular region of the choroid as being two separate layers, namely the Sattler's and Haller's layers, and some consider the lamina fusca as being either of scleral or choroidal origin. +subset: human_subset +subset: mouse_subset is_a: UBERON:0004923 ! organ component layer is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0013399 ! blood vessel layer of choroid @@ -362391,6 +381608,8 @@ id: UBERON:0036172 name: palmaris brevis def: "The Palmaris brevis is a thin, quadrilateral muscle, placed beneath the integument of the ulnar side of the hand. It arises by tendinous fasciculi from the transverse carpal ligament and palmar aponeurosis; the fleshy fibers are inserted into the skin on the ulnar border of the palm of the hand. The muscle is innervated by the superficial branch of the ulnar nerve, containing fibers from the eighth cervical and first thoracic nerves." [Wikipedia:Palmaris_brevis_muscle] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "musculus palmaris brevis" EXACT OMO:0003011 [FMA:TA, Wikipedia:Palmaris_brevis_muscle] synonym: "palmaris brevis muscle" EXACT [FMA:37381, Wikipedia:Palmaris_brevis_muscle] xref: FMA:37381 @@ -362403,6 +381622,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0036173 name: abductor digiti minimi of hand def: "The Abductor minimi digiti (Abductor digiti quinti) is situated on the ulnar border of the palm of the hand. It arises from the pisiform bone and from the tendon of the Flexor carpi ulnaris, and ends in a flat tendon, which divides into two slips; one is inserted into the ulnar side of the base of the first phalanx of the little finger; the other into the ulnar border of the aponeurosis of the Extensor digiti quinti proprius. In case of polydactyly it may insert to the sixth finger instead, if there is one." [Wikipedia:Abductor_minimi_digiti_muscle_(hand)] +subset: human_subset +subset: mouse_subset synonym: "abductor digiti minimi (hand)" RELATED [Wikipedia:Abductor_minimi_digiti_muscle_(hand)] synonym: "abductor digiti minimi manus" RELATED [Wikipedia:Abductor_minimi_digiti_muscle_(hand)] synonym: "abductor digiti minimi muscle of hand" EXACT [FMA:37382] @@ -362418,6 +381639,8 @@ is_a: UBERON:0014377 {source="FMA"} ! hypothenar muscle id: UBERON:0036174 name: flexor digiti minimi brevis of hand def: "The flexor digiti minimi brevis is a muscle in the hand that flexes the little finger. It lies in the same plane as the abductor digiti minimi, on its radial side." [Wikipedia:Flexor_digiti_minimi_brevis_(hand)] +subset: human_subset +subset: mouse_subset synonym: "flexor brevis minimi digiti muscle (hand)" RELATED [Wikipedia:Flexor_digiti_minimi_brevis_(hand)] synonym: "flexor digiti minimi brevis muscle" RELATED [Wikipedia:Flexor_digiti_minimi_brevis_(hand)] synonym: "flexor digiti minimi brevis muscle of hand" EXACT [FMA:37383] @@ -362432,6 +381655,8 @@ is_a: UBERON:0014377 {source="FMA"} ! hypothenar muscle id: UBERON:0036176 name: opponens digiti minimi of hand def: "The opponens minimi digiti (opponens digiti quinti in older texts) is a muscle in the hand. It is of a triangular form, and placed immediately beneath the palmaris brevis, abductor minimi digiti, and flexor brevis minimi digiti. It arises from the convexity of the hamulus of the hamate bone, and contiguous portion of the transverse carpal ligament; it is inserted into the whole length of the metacarpal bone of the little finger, along its ulnar margin." [Wikipedia:Opponens_digiti_minimi_muscle] +subset: human_subset +subset: mouse_subset synonym: "musculus opponens digiti minimi (Manus)" EXACT OMO:0003011 [FMA:TA] synonym: "opponens digiti minimi" RELATED [Wikipedia:Opponens_digiti_minimi_muscle] synonym: "opponens digiti minimi (hand)" RELATED [Wikipedia:Opponens_digiti_minimi_muscle] @@ -362446,12 +381671,16 @@ is_a: UBERON:0014377 {source="FMA"} ! hypothenar muscle id: UBERON:0036177 name: nucleus recessus def: "The fish catecholamines originate in two large aggregations of neurons: the nucleus recessus lateralis (NRL) and the nucleus recessus posterioris (NRP). The nuclei were found in the hypothalamus of numerous species, e.g., the gold fish, eel, and roach." [BTO:0003662, ISSN:1505-0297] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus [Term] id: UBERON:0036185 name: Sertoli cell barrier def: "The blood-testis barrier (abbreviated as BTB) is a physical barrier between the blood vessels and the seminiferous tubules of the animal testes. The barrier is formed by tight connections between the Sertoli cells, which are sustentacular cells (supporting cells) of the seminiferous tubules, and nourish the spermatogonia. The barrier prevents passage of cytotoxic agents (bodies or substances that are toxic to cells) into the seminiferous tubules." [Wikipedia:Blood-testis_barrier] +subset: human_subset +subset: mouse_subset synonym: "blood testis barrier" RELATED [Wikipedia:Blood-testis_barrier] synonym: "blood-testes barrier" RELATED [Wikipedia:Blood-testis_barrier] xref: MESH:D001814 @@ -362465,6 +381694,8 @@ relationship: composed_primarily_of CL:0000216 ! Sertoli cell [Term] id: UBERON:0036186 name: fibroelastic connective tissue +subset: human_subset +subset: mouse_subset xref: FMA:83520 is_a: UBERON:0002521 ! elastic tissue is_a: UBERON:0011824 ! fibrous connective tissue @@ -362477,6 +381708,8 @@ id: UBERON:0036212 name: intertragic incisure def: "A surface structure that is the narrowed downward continuation of the conchal space bounded anteriorly by the borders of the tragus, posteriorly by theantitragus, and along its lower lateral margins and inferior boundary by the connection between the first two." [https://github.com/obophenotype/human-phenotype-ontology/issues/2274, PMID:20082456, UBERON:cjm, Wikipedia:Incisura_anterior_auris] comment: Measurement notes: The length is measured from the upper to the lower border (between tragus and antitragus) +subset: human_subset +subset: mouse_subset synonym: "anterior auricular groove" RELATED [Wikipedia:Incisura_anterior_auris] synonym: "auricular notch" RELATED [Wikipedia:Incisura_anterior_auris] synonym: "incisura" BROAD [https://github.com/obophenotype/human-phenotype-ontology/issues/2274] @@ -362503,6 +381736,8 @@ relationship: part_of UBERON:0001757 ! pinna id: UBERON:0036214 name: rectosigmoid junction def: "An anatomical junction that is between the sigmoid colon and rectum." [https://github.com/obophenotype/uberon/issues/1319, https://www.cdc.gov/cancer/npcr/pdf/abstracting/colon.pdf, NCIT:C54188] +subset: human_subset +subset: mouse_subset synonym: "rectosigmoid region" RELATED [NCIT:C54188] xref: NCIT:C54188 xref: SCTID:245429006 @@ -362519,6 +381754,8 @@ id: UBERON:0036215 name: anatomical surface region def: "Material anatomical entity that forms the outermost boundary of an anatomical structure." [https://github.com/obophenotype/uberon/issues/1324] subset: common_anatomy +subset: human_subset +subset: mouse_subset xref: AAO:0010270 xref: ZFA:0005594 is_a: UBERON:0000465 ! material anatomical entity @@ -362533,6 +381770,8 @@ id: UBERON:0036216 name: tympanic nerve def: "The tympanic nerve (nerve of Jacobson) is a branch of the glossopharyngeal nerve found near the ear." [Wikipedia:Tympanic_nerve] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "jacobson%27s nerve" RELATED [Wikipedia:Tympanic_nerve] synonym: "nerve of jacobson" RELATED [Wikipedia:Tympanic_nerve] synonym: "tympanic" RELATED [Wikipedia:Tympanic_nerve] @@ -362550,6 +381789,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0036217 name: coelomic fluid def: "A bodily fluid that is located in the coelom." [https://github.com/obophenotype/uberon/issues/1326, PMID:10874572] +subset: human_subset +subset: mouse_subset xref: BTO:0001708 is_a: UBERON:0006314 ! bodily fluid intersection_of: UBERON:0006314 ! bodily fluid @@ -362562,6 +381803,8 @@ id: UBERON:0036218 name: secondary prosencephalon def: "The most anterior region of the forebrain including both the telencephalon and the hypothalamus in the prosomeric model." [DOI:10.1111/dgd.12348, https://github.com/obophenotype/uberon/issues/1322] comment: may contain the optic recess region (ORR) in the new model proposed by Yamamoto et al. 2017 (see https://www.ncbi.nlm.nih.gov/pubmed/28470718) +subset: human_subset +subset: mouse_subset synonym: "SP" RELATED OMO:0003000 [DMBA:15567] xref: DMBA:15567 is_a: UBERON:0002616 {source="DMBA"} ! regional part of brain @@ -362586,6 +381829,8 @@ relationship: proximal_to UBERON:0008963 ! hoof id: UBERON:0036224 name: corticobulbar and corticospinal tracts def: "The corticobulbar and corticospinal tracts combined." [https://github.com/obophenotype/uberon/issues/553] +subset: human_subset +subset: mouse_subset synonym: "pyramidal tract" BROAD INCONSISTENT [BIRNLEX:1464, MP:0002878, neuronames:1320] xref: Wikipedia:Pyramidal_tracts is_a: UBERON:0001018 ! axon tract @@ -362595,6 +381840,8 @@ relationship: part_of UBERON:0002316 {source="NIFSTD"} ! white matter id: UBERON:0036225 name: respiratory system gland def: "Any gland that is part os the respiratory system." [UBERON:cjm] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001004 ! respiratory system @@ -362619,6 +381866,8 @@ relationship: present_in_taxon NCBITaxon:8292 ! Amphibia id: UBERON:0036243 name: vaginal fluid def: "Fluid that lines the vaginal walls that consists of multiple secretions that collect in the vagina from different glands." [http://www.bumc.bu.edu/sexualmedicine/physicianinformation/female-genital-anatomy/] +subset: human_subset +subset: mouse_subset synonym: "vaginal discharge" RELATED [] synonym: "vaginal secretion" RELATED [] xref: BTO:0003084 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} @@ -362631,6 +381880,8 @@ relationship: located_in UBERON:0000996 ! vagina id: UBERON:0036244 name: secretion of serous membrane def: "A transudate found in the serous sac." [FMA:20932] +subset: human_subset +subset: mouse_subset synonym: "serous fluid" BROAD [FMA:20932] synonym: "serous sac fluid" EXACT [] xref: FMA:20932 @@ -362644,6 +381895,8 @@ relationship: located_in UBERON:0005906 ! serous sac id: UBERON:0036245 name: parenchyma of mammary gland def: "Parenchymal tissue that consists of the alveoli, grape-like clusters where milk is stored, and branching ducts, which are tubular canals carrying gladular secretions." [http://www.newworldencyclopedia.org/entry/Mammary_gland, https://github.com/obophenotype/uberon/issues/1349, https://orcid.org/0000-0003-3308-6245] +subset: human_subset +subset: mouse_subset synonym: "lactiferous gland parenchyma" EXACT [] synonym: "mammary gland parenchyma" EXACT [] synonym: "parenchyma of lactiferous gland" EXACT [] @@ -362657,6 +381910,8 @@ relationship: part_of UBERON:0001911 ! mammary gland id: UBERON:0036246 name: incudostapedial joint def: "The small synovial joint connecting the inclus and the stapes, located between the lenticular process on the long crus of the incus and the head of the stapes." [http://medical-dictionary.thefreedictionary.com/incudostapedial+joint, https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2305] +subset: human_subset +subset: mouse_subset synonym: "articulatio incudostapedialis" EXACT OMO:0003011 [FMA:TA] synonym: "incudostapedial articulation" EXACT [FMA:60065] xref: FMA:60065 @@ -362671,6 +381926,8 @@ relationship: connects UBERON:0015017 ! incus endochondral element id: UBERON:0036247 name: incudomallear joint def: "The saddle-shaped synovial joint connecting the incus and the malleus." [http://medical-dictionary.thefreedictionary.com/incudomallear+joint, https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2305] +subset: human_subset +subset: mouse_subset synonym: "articulatio incudomallearis" EXACT OMO:0003011 [FMA:TA] synonym: "incudomallear articulation" EXACT [FMA:60064] synonym: "incudomalleolar joint" EXACT [FMA:60064] @@ -362686,6 +381943,8 @@ relationship: connects UBERON:0015018 ! malleus endochondral element id: UBERON:0036248 name: joint of auditory ossicle def: "Any synovial joint that connects auditory ossicles." [UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "auditory ossicle joint" EXACT [] synonym: "auditory ossicles joint" EXACT [FMA:60063] synonym: "joint of auditory ossicles" EXACT [FMA:60063] @@ -362700,6 +381959,8 @@ relationship: part_of UBERON:0000033 ! head id: UBERON:0036249 name: zona pectinata of basilar membrane of cochlea def: "The acellular membrane that forms the outer two thirds of the basilar membrane of the conchlea." [http://medical-dictionary.thefreedictionary.com/zona+pectinata, https://github.com/obophenotype/uberon/issues/1357] +subset: human_subset +subset: mouse_subset synonym: "pectinate zone" BROAD [] synonym: "pectinate zone of basilar membrane" EXACT [] synonym: "pectinate zone of organ of corti" EXACT [] @@ -362714,6 +381975,8 @@ relationship: part_of UBERON:0002226 ! basilar membrane of cochlea [Term] id: UBERON:0036250 name: zone of basilar membrane of cochlea +subset: human_subset +subset: mouse_subset synonym: "zone of organ of corti" RELATED [] xref: SCTID:361065006 is_a: UBERON:0004121 ! ectoderm-derived structure @@ -362726,6 +381989,8 @@ relationship: part_of UBERON:0002226 ! basilar membrane of cochlea id: UBERON:0036252 name: interdigital space def: "The space between the digits of the hand or foot." [NCIT:C106201] +subset: human_subset +subset: mouse_subset xref: NCIT:C106201 is_a: UBERON:0000464 ! anatomical space relationship: adjacent_to UBERON:0002544 {cardinality="2"} ! digit @@ -362733,6 +381998,8 @@ relationship: adjacent_to UBERON:0002544 {cardinality="2"} ! digit [Term] id: UBERON:0036253 name: orifice of skull +subset: human_subset +subset: mouse_subset synonym: "cranial orifice" EXACT [FMA:53133] synonym: "skull orifice" EXACT [FMA:53133] xref: FMA:53133 @@ -362745,6 +382012,8 @@ relationship: part_of UBERON:0003129 ! skull id: UBERON:0036254 name: piriform aperture def: "A pear-shaped bony inlet comprising the most anterior and narrowest bony portion of the nasal airway." [MGI:anna, PMID:17082934, Wikipedia:Anterior_nasal_aperture] +subset: human_subset +subset: mouse_subset synonym: "apertura piriformis" EXACT OMO:0003011 [FMA:TA] synonym: "apertura piriformis" RELATED [Wikipedia:Anterior_nasal_aperture] synonym: "piriform aperture" RELATED [Wikipedia:Anterior_nasal_aperture] @@ -362759,6 +382028,8 @@ relationship: part_of UBERON:0006813 ! nasal skeleton id: UBERON:0036255 name: interoceptive system def: "The system that is responsible for sensing the internal state of the body." [https://github.com/obophenotype/uberon/issues/1385, Wikipedia:Interoception] +subset: human_subset +subset: mouse_subset xref: Wikipedia:Interoception is_a: UBERON:0001032 ! sensory system @@ -362766,6 +382037,8 @@ is_a: UBERON:0001032 ! sensory system id: UBERON:0036256 name: iliac lymph sac def: "An embryonic lymph sac that forms near the junction of the iliac veins with the posterior cardinal veins." [https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system, https://github.com/obophenotype/uberon/issues/1383] +subset: human_subset +subset: mouse_subset xref: NCIT:C34191 is_a: UBERON:0034953 {source="NCIT"} ! embryonic lymph sac @@ -362781,6 +382054,8 @@ relationship: in_taxon NCBITaxon:8293 ! Caudata id: UBERON:0036260 name: embryonic cisterna chyli def: "An embryonic lymph sac that is dorsal to the retroperitoneal lymph sac, at the level of the adrenal glands." [https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system, https://github.com/obophenotype/uberon/issues/1383] +subset: human_subset +subset: mouse_subset synonym: "future upper portion of the cisterna chyli" RELATED [] xref: EHDAA2:0000253 is_a: UBERON:0034953 {source="cjm"} ! embryonic lymph sac @@ -362798,6 +382073,8 @@ relationship: present_in_taxon NCBITaxon:65997 id: UBERON:0036262 name: uterine ligament def: "Any of the eight ligaments pertaining to the uterus including the anterior, posterior, lateral, sacro-uterine and round ligaments." [NCIT:C61360] +subset: human_subset +subset: mouse_subset xref: NCIT:C61360 xref: SCTID:272668006 is_a: UBERON:0000211 ! ligament @@ -362810,6 +382087,8 @@ relationship: part_of UBERON:0000002 ! uterine cervix id: UBERON:0036263 name: supraglottic part of larynx def: "The upper part of the larynx, including the epiglottis; the area above the vocal cords." [NCIT:C12279] +subset: human_subset +subset: mouse_subset synonym: "supraglottic larynx" EXACT [FMA:55476] synonym: "supraglottis" EXACT [NCIT:C12279] xref: FMA:55476 @@ -362822,6 +382101,8 @@ relationship: part_of UBERON:0001737 {source="FMA"} ! larynx id: UBERON:0036264 name: zygomaticotemporal nerve def: "The zygomaticotemporal nerve or zygomaticotemporal branch (temporal branch) is derived from the maxillary branch of the trigeminal nerve (Cranial nerve V). It runs along the lateral wall of the orbit in a groove in the zygomatic bone, receives a branch of communication from the lacrimal, and passes through zygomaticotemporal foramen in the zygomatic bone to enter the temporal fossa. It ascends between the bone, and substance of the Temporalis muscle, pierces the temporal fascia about 2.5 cm. above the zygomatic arch, and is distributed to the skin of the side of the forehead, and communicates with the facial nerve and with the auriculotemporal branch of the mandibular nerve. As it pierces the temporal fascia, it gives off a slender twig, which runs between the two layers of the fascia to the lateral angle of the orbit." [Wikipedia:Zygomaticotemporal_nerve] +subset: human_subset +subset: mouse_subset synonym: "ramus zygomaticotemporalis (Nervus zygomaticus)" EXACT [FMA:52972] synonym: "ramus zygomaticotemporalis nervus zygomatici" EXACT OMO:0003011 [FMA:TA] synonym: "zygomaticotemporal" RELATED [Wikipedia:Zygomaticotemporal_nerve] @@ -362837,6 +382118,8 @@ relationship: part_of UBERON:0000377 ! maxillary nerve [Term] id: UBERON:0036265 name: conjunctival papilla +subset: human_subset +subset: mouse_subset synonym: "conjunctival papillae" EXACT OMO:0003004 [] xref: SCTID:280681004 is_a: UBERON:0004121 ! ectoderm-derived structure @@ -362849,6 +382132,8 @@ relationship: part_of UBERON:0001811 ! conjunctiva id: UBERON:0036266 name: pars interarticularis of vertebra def: "The part of vertebra located between the inferior and superior articular processes of the facet joint." [Wikipedia:Pars_interarticularis] +subset: human_subset +subset: mouse_subset synonym: "pars interarticularis" EXACT [] xref: SCTID:705098005 xref: Wikipedia:Pars_interarticularis @@ -362858,6 +382143,8 @@ relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0036267 name: vulval vein +subset: human_subset +subset: mouse_subset xref: SCTID:279975006 is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein @@ -362868,6 +382155,8 @@ relationship: part_of RO:0002577 ! system [Term] id: UBERON:0036268 name: pelvic vein +subset: human_subset +subset: mouse_subset xref: SCTID:13152008 is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein @@ -362878,6 +382167,8 @@ relationship: part_of RO:0002577 ! system [Term] id: UBERON:0036269 name: penis blood vessel +subset: human_subset +subset: mouse_subset synonym: "penis vasculature" RELATED [] synonym: "vasculature of penis" RELATED [EMAPA:30807] xref: EMAPA:30807 @@ -362901,6 +382192,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0036271 name: omphalopleure def: "A fetal membrane, part of the yolk sac, that appears during some placentation processes." [https://github.com/obophenotype/uberon/issues/1426, https://orcid.org/0000-0003-3308-6245, PMID:10761048, PMID:29416852] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000158 ! membranous layer relationship: in_taxon NCBITaxon:9347 ! Eutheria relationship: part_of UBERON:0001040 ! yolk sac @@ -362909,6 +382202,8 @@ relationship: part_of UBERON:0001040 ! yolk sac id: UBERON:0036272 name: bilaminar omphalopleure def: "A non-vascular omphalopleure that supports uptake and metabolism of nutrients." [https://github.com/obophenotype/uberon/issues/1426, https://orcid.org/0000-0003-3308-6245, PMID:10761048, PMID:29416852] +subset: human_subset +subset: mouse_subset synonym: "non-vascular bilaminar omphalopleure" EXACT [] is_a: UBERON:0036271 ! omphalopleure @@ -362916,6 +382211,8 @@ is_a: UBERON:0036271 ! omphalopleure id: UBERON:0036273 name: trilaminar omphalopleure def: "A vascular omphalopleure that is important for respiration." [https://github.com/obophenotype/uberon/issues/1426, https://orcid.org/0000-0003-3308-6245, PMID:10761048, PMID:29416852] +subset: human_subset +subset: mouse_subset synonym: "choriovitelline membrane" EXACT [PMID:10761048] synonym: "vascular TOM" EXACT [PMID:10761048] synonym: "vascular trilaminar omphalopleure" EXACT [PMID:10761048] @@ -362926,6 +382223,8 @@ id: UBERON:0036274 name: tonsillar pillar def: "The anterior and posterior borders of the tonsillar fossa. They are composed of muscle tissue." [NCIT:C12236] comment: Consider merge with palatopharyngeus +subset: human_subset +subset: mouse_subset xref: NCIT:C12236 is_a: UBERON:0002385 ! muscle tissue relationship: part_of UBERON:0002372 {source="NCIT"} ! tonsil @@ -362934,6 +382233,8 @@ relationship: part_of UBERON:0002372 {source="NCIT"} ! tonsil id: UBERON:0036285 name: wall of left ventricle def: "Wall of ventricle which is continuous with the wall of aorta." [FMA:9556] +subset: human_subset +subset: mouse_subset synonym: "left ventricular wall" EXACT [FMA:9556] xref: FMA:9556 is_a: UBERON:0004784 {source="FMA"} ! heart ventricle wall @@ -362945,6 +382246,8 @@ relationship: part_of UBERON:0002084 {source="FMA"} ! heart left ventricle id: UBERON:0036286 name: wall of right ventricle def: "Wall of ventricle which is continuous with the wall of pulmonary trunk." [FMA:9533] +subset: human_subset +subset: mouse_subset synonym: "right ventricular wall" EXACT [FMA:9533] xref: FMA:9533 is_a: UBERON:0004784 {source="FMA"} ! heart ventricle wall @@ -362955,6 +382258,8 @@ relationship: part_of UBERON:0002080 {source="FMA"} ! heart right ventricle [Term] id: UBERON:0036288 name: anterior wall of left ventricle +subset: human_subset +subset: mouse_subset xref: FMA:9560 is_a: UBERON:0036285 ! wall of left ventricle intersection_of: UBERON:0004784 ! heart ventricle wall @@ -362966,6 +382271,8 @@ relationship: part_of UBERON:0036285 {source="FMA"} ! wall of left ventricle id: UBERON:0036289 name: anterior wall of right ventricle def: "Region of wall of right ventricle which is continuous with the lateral and septal walls of right ventricle." [FMA:9553] +subset: human_subset +subset: mouse_subset xref: FMA:9553 is_a: UBERON:0036286 ! wall of right ventricle intersection_of: UBERON:0004784 ! heart ventricle wall @@ -362975,6 +382282,8 @@ relationship: in_anterior_side_of UBERON:0002080 ! heart right ventricle [Term] id: UBERON:0036290 name: myocardium of anterior wall of left ventricle +subset: human_subset +subset: mouse_subset xref: FMA:87177 is_a: UBERON:0006566 ! left ventricle myocardium intersection_of: UBERON:0002349 ! myocardium @@ -362984,6 +382293,8 @@ relationship: part_of UBERON:0036288 ! anterior wall of left ventricle [Term] id: UBERON:0036291 name: myocardium of anterior wall of right ventricle +subset: human_subset +subset: mouse_subset xref: FMA:260877 is_a: UBERON:0006567 ! right ventricle myocardium intersection_of: UBERON:0002349 ! myocardium @@ -362994,6 +382305,8 @@ relationship: part_of UBERON:0036289 ! anterior wall of right ventricle id: UBERON:0036292 name: adnexa of uterus def: "The fallopian tubes and ovaries." [Wikipedia:Adnexa_of_uterus] +subset: human_subset +subset: mouse_subset synonym: "adnexa uteri" RELATED [Wikipedia:Adnexa_of_uterus] synonym: "uterine adnexa" EXACT [FMA:265256] xref: FMA:265256 @@ -363007,6 +382320,8 @@ relationship: part_of UBERON:0000995 ! uterus id: UBERON:0036293 name: oral frenulum def: "A small fold of mucous membrane in the mouth, connecting either the tongue or the lip to the mouth mucosa." [https://github.com/obophenotype/human-phenotype-ontology/issues/3336, UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "frenulum" BROAD [] synonym: "oral frenula" EXACT OMO:0003004 [HP:0000190] synonym: "oral frenulum" EXACT [HP:0000190] @@ -363021,6 +382336,8 @@ relationship: part_of UBERON:0000165 ! mouth id: UBERON:0036294 name: mucosa of lip def: "A mucosa that is part of a lip region [Automatically generated definition]." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "labial mucosa" EXACT [UBERON:cjm] xref: NCIT:C12226 is_a: UBERON:0003729 ! mouth mucosa @@ -363033,6 +382350,8 @@ id: UBERON:0036295 name: renal pelvis/ureter def: "The upper tract of the renal system. The renal pelvis is the large cavity in the middle of each kidney. Urine drains from each kidney through a long tube called the ureter, into the bladder, where it is stored until it is passed from the body through the urethra." [NCIT:C54419] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "renal pelvis and ureter" EXACT [] synonym: "renal pelvis plus ureter" EXACT [] xref: NCIT:C54419 @@ -363044,6 +382363,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0036300 name: tributary of central retinal vein subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "central retinal venous tributary" EXACT [FMA:51892] xref: FMA:51892 xref: SCTID:731368004 @@ -363057,6 +382378,8 @@ relationship: tributary_of UBERON:0001673 ! central retinal vein [Term] id: UBERON:0036301 name: vasculature of spleen +subset: human_subset +subset: mouse_subset xref: FMA:225251 xref: SCTID:297287005 is_a: UBERON:0002201 ! vasculature of trunk @@ -363068,6 +382391,8 @@ relationship: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0036302 name: vasculature of central nervous system plus retina +subset: human_subset +subset: mouse_subset is_a: UBERON:0002049 ! vasculature union_of: UBERON:0004864 ! vasculature of retina union_of: UBERON:0036303 ! vasculature of central nervous system @@ -363075,6 +382400,8 @@ union_of: UBERON:0036303 ! vasculature of central nervous system [Term] id: UBERON:0036303 name: vasculature of central nervous system +subset: human_subset +subset: mouse_subset xref: FMA:259905 is_a: UBERON:0036302 ! vasculature of central nervous system plus retina intersection_of: UBERON:0002049 ! vasculature @@ -363086,6 +382413,8 @@ id: UBERON:0036304 name: anatomical border def: "An anatomical structure that is located along the line dividing two regions of an anatomical structure." [UBERON:cjm] subset: common_anatomy +subset: human_subset +subset: mouse_subset is_a: UBERON:0000061 ! anatomical structure relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae relationship: present_in_taxon NCBITaxon:33208 ! Metazoa @@ -363094,6 +382423,8 @@ relationship: present_in_taxon NCBITaxon:4751 ! Fungi [Term] id: UBERON:0036328 name: wall of coronary artery +subset: human_subset +subset: mouse_subset synonym: "coronary arterial wall" EXACT [FMA:14179] xref: FMA:14179 is_a: UBERON:0000415 {source="FMA"} ! artery wall @@ -363105,6 +382436,8 @@ relationship: part_of UBERON:0001621 {source="FMA"} ! coronary artery [Term] id: UBERON:0036337 name: wall of appendix +subset: human_subset +subset: mouse_subset synonym: "appendix wall" EXACT [FMA:14621] synonym: "wall of vermiform appendix" EXACT [FMA:14621] xref: FMA:14621 @@ -363118,6 +382451,8 @@ relationship: part_of UBERON:0001169 {source="FMA"} ! wall of large intestine [Term] id: UBERON:0036343 name: wall of gallbladder +subset: human_subset +subset: mouse_subset synonym: "gallbladder wall" EXACT [FMA:14657] xref: FMA:14657 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall @@ -363130,6 +382465,8 @@ relationship: part_of UBERON:0002110 {source="FMA"} ! gallbladder [Term] id: UBERON:0036351 name: wall of brachiocephalic artery +subset: human_subset +subset: mouse_subset synonym: "brachiocephalic arterial wall" EXACT [FMA:15089] xref: FMA:15089 is_a: UBERON:0000415 {source="FMA"} ! artery wall @@ -363140,6 +382477,8 @@ relationship: part_of UBERON:0001529 {source="FMA"} ! brachiocephalic artery [Term] id: UBERON:0036352 name: wall of subclavian artery +subset: human_subset +subset: mouse_subset synonym: "subclavian arterial wall" EXACT [FMA:15090] xref: FMA:15090 is_a: UBERON:0000415 {source="FMA"} ! artery wall @@ -363150,6 +382489,8 @@ relationship: part_of UBERON:0001533 {source="FMA"} ! subclavian artery [Term] id: UBERON:0036362 name: wall of anal canal +subset: human_subset +subset: mouse_subset synonym: "anal canal wall" EXACT [FMA:15704] xref: FMA:15704 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall @@ -363164,6 +382505,8 @@ relationship: part_of UBERON:0001007 {source="FMA"} ! digestive system [Term] id: UBERON:0036375 name: wall of right ureter +subset: human_subset +subset: mouse_subset synonym: "right ureteral wall" EXACT [FMA:15889] xref: FMA:15889 is_a: UBERON:0009916 {source="FMA"} ! wall of ureter @@ -363175,6 +382518,8 @@ relationship: part_of UBERON:0001222 {source="FMA"} ! right ureter id: UBERON:0036376 name: wall of left ureter subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "left ureteral wall" EXACT [FMA:15890] xref: FMA:15890 is_a: UBERON:0009916 {source="FMA"} ! wall of ureter @@ -363186,6 +382531,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0036422 name: wall of pulmonary artery +subset: human_subset +subset: mouse_subset synonym: "pulmonary arterial wall" EXACT [FMA:18211] xref: FMA:18211 is_a: UBERON:0000415 {source="FMA"} ! artery wall @@ -363196,6 +382543,8 @@ relationship: part_of UBERON:0002012 {source="FMA"} ! pulmonary artery [Term] id: UBERON:0036441 name: wall of fallopian tube +subset: human_subset +subset: mouse_subset synonym: "uterine tube wall" EXACT [FMA:18303] synonym: "wall of oviduct" EXACT [FMA:18303] synonym: "wall of uterine tube" EXACT [] @@ -363210,6 +382559,8 @@ relationship: part_of UBERON:0003889 {source="FMA"} ! fallopian tube [Term] id: UBERON:0036521 name: wall of urethra +subset: human_subset +subset: mouse_subset synonym: "urethral wall" EXACT [FMA:19779] xref: FMA:19779 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall @@ -363221,6 +382572,8 @@ relationship: part_of UBERON:0000057 {source="FMA"} ! urethra [Term] id: UBERON:0036523 name: wall of vagina +subset: human_subset +subset: mouse_subset synonym: "vaginal wall" EXACT [FMA:19971] xref: FMA:19971 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall @@ -363233,6 +382586,8 @@ relationship: part_of UBERON:0000996 {source="FMA"} ! vagina [Term] id: UBERON:0036553 name: wall of synovial tendon sheath +subset: human_subset +subset: mouse_subset xref: FMA:231590 is_a: UBERON:0000042 {source="FMA"} ! serous membrane is_a: UBERON:0000060 ! anatomical wall @@ -363243,6 +382598,8 @@ relationship: part_of UBERON:0000304 {source="FMA"} ! tendon sheath [Term] id: UBERON:0036654 name: wall of lateral ventricle +subset: human_subset +subset: mouse_subset xref: FMA:242772 is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system is_a: UBERON:0036661 ! wall of ventricular system of brain @@ -363253,6 +382610,8 @@ relationship: part_of UBERON:0002285 {source="FMA"} ! telencephalic ventricle [Term] id: UBERON:0036655 name: wall of cerebral aqueduct +subset: human_subset +subset: mouse_subset xref: FMA:242774 is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system is_a: UBERON:0036661 ! wall of ventricular system of brain @@ -363263,6 +382622,8 @@ relationship: part_of UBERON:0002289 {source="FMA"} ! midbrain cerebral aqueduct [Term] id: UBERON:0036656 name: wall of third ventricle +subset: human_subset +subset: mouse_subset xref: FMA:242776 is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system is_a: UBERON:0036661 ! wall of ventricular system of brain @@ -363273,6 +382634,8 @@ relationship: part_of UBERON:0002286 {source="FMA"} ! third ventricle [Term] id: UBERON:0036657 name: wall of fourth ventricle +subset: human_subset +subset: mouse_subset xref: FMA:242778 is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system is_a: UBERON:0036661 ! wall of ventricular system of brain @@ -363283,6 +382646,8 @@ relationship: part_of UBERON:0002422 {source="FMA"} ! fourth ventricle [Term] id: UBERON:0036658 name: wall of central canal of spinal cord +subset: human_subset +subset: mouse_subset synonym: "wall of central canal" EXACT [FMA:242780] xref: FMA:242780 is_a: UBERON:0000060 ! anatomical wall @@ -363295,6 +382660,8 @@ relationship: part_of UBERON:0002291 {source="FMA"} ! central canal of spinal co [Term] id: UBERON:0036661 name: wall of ventricular system of brain +subset: human_subset +subset: mouse_subset xref: FMA:242841 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0004121 ! ectoderm-derived structure @@ -363306,6 +382673,8 @@ relationship: part_of UBERON:0005282 {source="FMA"} ! ventricular system of brai [Term] id: UBERON:0036925 name: wall of eyeball +subset: human_subset +subset: mouse_subset synonym: "eyeball wall" EXACT [FMA:58098] xref: FMA:58098 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall @@ -363317,6 +382686,8 @@ relationship: part_of UBERON:0010230 {source="FMA"} ! eyeball of camera-type eye [Term] id: UBERON:0036990 name: wall of pharyngotympanic tube +subset: human_subset +subset: mouse_subset synonym: "pharyngotympanic tube wall" EXACT [FMA:60069] xref: FMA:60069 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall @@ -363327,6 +382698,8 @@ relationship: part_of UBERON:0002393 {source="FMA"} ! pharyngotympanic tube [Term] id: UBERON:0037089 name: wall of orbit +subset: human_subset +subset: mouse_subset synonym: "orbit wall" EXACT [FMA:63144] xref: FMA:63144 is_a: UBERON:0000060 ! anatomical wall @@ -363339,6 +382712,8 @@ relationship: part_of UBERON:0001697 {source="FMA"} ! orbit of skull [Term] id: UBERON:0037094 name: wall of common carotid artery +subset: human_subset +subset: mouse_subset synonym: "common carotid arterial wall" EXACT [FMA:66284] xref: FMA:66284 is_a: UBERON:0000415 {source="FMA"} ! artery wall @@ -363350,6 +382725,8 @@ relationship: part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus id: UBERON:0037144 name: wall of heart def: "Wall of organ which has as its parts the endocardium, myocardium , epicardium, and the cardiac septum, surrounded by the pericardial sac proper and is continuous with the walls of the systemic and pulmonary arterial and venous trees." [FMA:7274] +subset: human_subset +subset: mouse_subset synonym: "cardiac wall" EXACT [FMA:7274] xref: FMA:7274 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall @@ -363364,6 +382741,8 @@ relationship: part_of UBERON:0000948 {source="FMA"} ! heart [Term] id: UBERON:0037191 name: wall of membranous labyrinth +subset: human_subset +subset: mouse_subset synonym: "membranous labyrinth wall" EXACT [FMA:79837] xref: FMA:79837 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall @@ -363375,6 +382754,8 @@ relationship: part_of UBERON:0001849 {source="FMA"} ! membranous labyrinth [Term] id: UBERON:0037237 name: wall of lacrimal duct +subset: human_subset +subset: mouse_subset synonym: "lacrimal ductal wall" EXACT [FMA:85375] xref: FMA:85375 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall @@ -363386,6 +382767,8 @@ relationship: part_of UBERON:0001850 {source="FMA"} ! lacrimal drainage system [Term] id: UBERON:0037447 name: wall of male urethra +subset: human_subset +subset: mouse_subset synonym: "male urethral wall" EXACT [FMA:19676] xref: FMA:19676 is_a: UBERON:0036521 {source="FMA"} ! wall of urethra @@ -363396,6 +382779,8 @@ relationship: part_of UBERON:0001333 {source="FMA"} ! male urethra [Term] id: UBERON:0037455 name: wall of female urethra +subset: human_subset +subset: mouse_subset synonym: "female urethral wall" EXACT [FMA:19780] xref: FMA:19780 is_a: UBERON:0036521 {source="FMA"} ! wall of urethra @@ -363406,6 +382791,8 @@ relationship: part_of UBERON:0001334 {source="FMA"} ! female urethra [Term] id: UBERON:0037458 name: hair of neck +subset: human_subset +subset: mouse_subset synonym: "neck hair" EXACT [FMA:54242] xref: FMA:54242 is_a: UBERON:0001037 ! strand of hair @@ -363416,6 +382803,8 @@ relationship: part_of UBERON:0000974 ! neck [Term] id: UBERON:0037459 name: hair of limb +subset: human_subset +subset: mouse_subset synonym: "limb hair" EXACT [FMA:54243] xref: FMA:54243 is_a: UBERON:0001037 ! strand of hair @@ -363428,6 +382817,8 @@ id: UBERON:0037461 name: primary hair def: "Very thin, soft, usually unpigmented, downy hair that is sometimes found on the body of a fetal or new-born human." [https://en.wikipedia.org/wiki/Lanugo] comment: It is replaced by hair covering the same surfaces, which is called vellus hair. +subset: human_subset +subset: mouse_subset synonym: "downy hair" EXACT [FMA:70667] synonym: "lanugo" EXACT OMO:0003011 [FMA:TA] xref: FMA:70667 @@ -363438,6 +382829,8 @@ id: UBERON:0037462 name: vellus hair def: "Short, thin, slight-colored, and barely noticeable hair that develops on most of a person's body during childhood." [https://en.wikipedia.org/wiki/Vellus_hair] comment: Vellus hair is differentiated from the more visible terminal or androgenic hair, which develops only during and after puberty, usually to a greater extent on men than it does on women. +subset: human_subset +subset: mouse_subset synonym: "peach fuzz" RELATED [https://en.wikipedia.org/wiki/Vellus_hair] xref: FMA:70668 is_a: UBERON:0001037 ! strand of hair @@ -363447,6 +382840,8 @@ disjoint_from: UBERON:0037463 ! terminal hair id: UBERON:0037463 name: terminal hair def: "Thick and long hair, as compared with vellus hair growing elsewhere." [https://en.wikipedia.org/wiki/Terminal_hair] +subset: human_subset +subset: mouse_subset xref: FMA:70669 is_a: UBERON:0001037 ! strand of hair @@ -363455,6 +382850,8 @@ id: UBERON:0037464 name: androgenic hair def: "The terminal hair that develops on the human body during and after puberty. It is differentiated from the head hair and less visible vellus hair, which is much finer and lighter in color." [https://orcid.org/0000-0002-2825-0621] comment: The growth of androgenic hair is related to the level of androgens (often referred to as male hormones) and the density of androgen receptors in the dermal papillae. Both must reach a threshold for the proliferation of hair follicle cells +subset: human_subset +subset: mouse_subset synonym: "body hair" RELATED [https://orcid.org/0000-0002-2825-0621] is_a: UBERON:0037463 ! terminal hair @@ -363462,6 +382859,8 @@ is_a: UBERON:0037463 ! terminal hair id: UBERON:0037465 name: catagen hair comment: TODO: axiomatize using GO +subset: human_subset +subset: mouse_subset xref: FMA:70717 is_a: UBERON:0001037 ! strand of hair @@ -363469,6 +382868,8 @@ is_a: UBERON:0001037 ! strand of hair id: UBERON:0037466 name: telogen hair comment: TODO: axiomatize using GO +subset: human_subset +subset: mouse_subset xref: FMA:70718 is_a: UBERON:0001037 ! strand of hair @@ -363476,6 +382877,8 @@ is_a: UBERON:0001037 ! strand of hair id: UBERON:0037467 name: anagen hair comment: TODO: axiomatize using GO +subset: human_subset +subset: mouse_subset xref: FMA:70716 is_a: UBERON:0001037 {source="FMA"} ! strand of hair @@ -363483,6 +382886,8 @@ is_a: UBERON:0001037 {source="FMA"} ! strand of hair id: UBERON:0037468 name: waist def: "The part of the human abdomen below the ribs and above the hips, often narrower than the areas above and below." [https://en.wikipedia.org/w/index.php?title=Waist&oldid=987321825, https://orcid.org/0000-0002-2825-0621] +subset: human_subset +subset: mouse_subset xref: FMA:228775 is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk relationship: part_of UBERON:0000916 {source="https://orcid.org/0000-0002-2825-0621"} ! abdomen @@ -363490,6 +382895,8 @@ relationship: part_of UBERON:0000916 {source="https://orcid.org/0000-0002-2825-0 [Term] id: UBERON:0037480 name: supramammary lymph node +subset: human_subset +subset: mouse_subset synonym: "supramammary node" EXACT [FMA:12785] xref: FMA:12785 is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node @@ -363498,6 +382905,8 @@ is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node id: UBERON:0037494 name: paracardial gastric lymph node def: "Gastric lymph node located around the cardia of stomach." [FMA:12803] +subset: human_subset +subset: mouse_subset synonym: "aJCC level 16" EXACT [FMA:12803] synonym: "lymph node ring of cardia of stomach" EXACT [FMA:12803] synonym: "paracardial gastric node" EXACT [FMA:12803] @@ -363509,6 +382918,8 @@ is_a: UBERON:0015863 {source="FMA"} ! gastric lymph node id: UBERON:0037500 name: subscapular axillary lymph node def: "An axillary lymph node that is placed along the lower margin of the posterior wall of the axilla in the course of the subscapular artery." [Wikipedia:Subscapular_axillary_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "nodus lymphaticus subscapularis axillae" EXACT [FMA:14187] synonym: "posterior axillary node" EXACT [FMA:14187] synonym: "subcapsular node" EXACT [FMA:14187] @@ -363519,6 +382930,8 @@ is_a: UBERON:0037560 {source="FMA"} ! superficial axillary lymph node id: UBERON:0037501 name: pectoral axillary lymph node def: "An axiallary lymph node along the lower border of the Pectoralis minor, in relation with the lateral thoracic artery. Their afferents drain the skin and muscles of the anterior and lateral thoracic walls, and the central and lateral parts of the mamma; their efferents pass partly to the central and partly to the subclavicular groups of axillary glands." [Wikipedia:Pectoral_axillary_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "anterior axillary lymph node" EXACT [FMA:14188, Wikipedia:Pectoral_axillary_lymph_nodes] synonym: "nodus lymphaticus pectoralis axillae" EXACT [FMA:14188] synonym: "pectoral lymph node" EXACT [FMA:14188] @@ -363529,6 +382942,8 @@ is_a: UBERON:0037560 {source="FMA"} ! superficial axillary lymph node id: UBERON:0037502 name: central axillary lymph node def: "An axillary lymph node that is imbedded in the adipose tissue near the base of the axilla." [Wikipedia:Central_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "central node" EXACT [FMA:14189] synonym: "nodus lymphaticus centralis axillae" EXACT [FMA:14189] xref: FMA:14189 @@ -363538,6 +382953,8 @@ is_a: UBERON:0037560 {source="FMA"} ! superficial axillary lymph node id: UBERON:0037503 name: apical axillary lymph node def: "An axillary lymph node that is situated partly posterior to the upper portion of the Pectoralis minor and partly above the upper border of this muscle." [Wikipedia:Apical_lymph_nodes] +subset: human_subset +subset: mouse_subset synonym: "nodus lymphaticus apicalis axillae" EXACT [FMA:14190] xref: FMA:14190 is_a: UBERON:0037560 {source="FMA"} ! superficial axillary lymph node @@ -363545,6 +382962,8 @@ is_a: UBERON:0037560 {source="FMA"} ! superficial axillary lymph node [Term] id: UBERON:0037514 name: intermediate mesenteric lymph node +subset: human_subset +subset: mouse_subset synonym: "central mesenteric lymph node" EXACT [FMA:16609] synonym: "central superior mesenteric lymph node" EXACT [FMA:16609] synonym: "intermediate lymph node of small intestine" EXACT [FMA:16609] @@ -363555,6 +382974,8 @@ is_a: UBERON:0002509 {source="FMA"} ! mesenteric lymph node [Term] id: UBERON:0037515 name: juxta-arterial mesenteric lymph node +subset: human_subset +subset: mouse_subset synonym: "juxta-arterial mesenteric node" EXACT [FMA:16610] xref: FMA:16610 is_a: UBERON:0002509 {source="FMA"} ! mesenteric lymph node @@ -363562,6 +382983,8 @@ is_a: UBERON:0002509 {source="FMA"} ! mesenteric lymph node [Term] id: UBERON:0037518 name: epicolic lymph node +subset: human_subset +subset: mouse_subset synonym: "epicolic node" EXACT [FMA:16613] xref: FMA:16613 is_a: UBERON:0039168 {source="FMA"} ! colic lymph node @@ -363569,6 +382992,8 @@ is_a: UBERON:0039168 {source="FMA"} ! colic lymph node [Term] id: UBERON:0037521 name: preterminal colic lymph node +subset: human_subset +subset: mouse_subset synonym: "preterminal colic node" EXACT [FMA:16616] xref: FMA:16616 is_a: UBERON:0039168 {source="FMA"} ! colic lymph node @@ -363576,6 +383001,8 @@ is_a: UBERON:0039168 {source="FMA"} ! colic lymph node [Term] id: UBERON:0037522 name: ileal lymph node +subset: human_subset +subset: mouse_subset synonym: "ileal mesentary lymph node" EXACT [FMA:16617] synonym: "ileal node" EXACT [FMA:16617] xref: FMA:16617 @@ -363584,6 +383011,8 @@ is_a: UBERON:0002509 {source="FMA"} ! mesenteric lymph node [Term] id: UBERON:0037527 name: superior pancreaticoduodenal lymph node +subset: human_subset +subset: mouse_subset synonym: "superior pancreaticoduodenal node" EXACT [FMA:16624] xref: FMA:16624 is_a: UBERON:0016401 {source="FMA"} ! pancreaticoduodenal lymph node @@ -363591,6 +383020,8 @@ is_a: UBERON:0016401 {source="FMA"} ! pancreaticoduodenal lymph node [Term] id: UBERON:0037528 name: inferior pancreaticoduodenal lymph node +subset: human_subset +subset: mouse_subset synonym: "inferior pancreaticoduodenal node" EXACT [FMA:16625] xref: FMA:16625 is_a: UBERON:0016401 {source="FMA"} ! pancreaticoduodenal lymph node @@ -363599,6 +383030,8 @@ is_a: UBERON:0016401 {source="FMA"} ! pancreaticoduodenal lymph node id: UBERON:0037530 name: inferior pancreatic lymph node def: "Pancreaticosplenioc lymph node located along the inferior margin of pancreas." [FMA:16628] +subset: human_subset +subset: mouse_subset synonym: "inferior pancreatic node" EXACT [FMA:16628] synonym: "inferior pancreatiosplenic lymph node" EXACT [FMA:16628] synonym: "jPS 18 node" EXACT [FMA:16628] @@ -363611,6 +383044,8 @@ is_a: UBERON:0002527 {source="FMA"} ! pancreatic lymph node [Term] id: UBERON:0037531 name: intestinal lymph node +subset: human_subset +subset: mouse_subset synonym: "intestinal node" EXACT [FMA:16629] synonym: "visceral lumbar lymph node" EXACT [FMA:16629] xref: FMA:16629 @@ -363619,6 +383054,8 @@ is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node [Term] id: UBERON:0037532 name: medial common iliac lymph node +subset: human_subset +subset: mouse_subset synonym: "medial common iliac node" EXACT [FMA:16641] xref: FMA:16641 is_a: UBERON:0015878 {source="FMA"} ! common iliac lymph node @@ -363627,6 +383064,8 @@ is_a: UBERON:8470001 ! sublumbar lymph node [Term] id: UBERON:0037533 name: intermediate common iliac lymph node +subset: human_subset +subset: mouse_subset synonym: "intermediate common iliac node" EXACT [FMA:16642] xref: FMA:16642 is_a: UBERON:0015878 {source="FMA"} ! common iliac lymph node @@ -363634,6 +383073,8 @@ is_a: UBERON:0015878 {source="FMA"} ! common iliac lymph node [Term] id: UBERON:0037534 name: lateral common iliac lymph node +subset: human_subset +subset: mouse_subset synonym: "lateral common iliac node" EXACT [FMA:16643] xref: FMA:16643 is_a: UBERON:0015878 {source="FMA"} ! common iliac lymph node @@ -363641,6 +383082,8 @@ is_a: UBERON:0015878 {source="FMA"} ! common iliac lymph node [Term] id: UBERON:0037535 name: subaortic common iliac lymph node +subset: human_subset +subset: mouse_subset synonym: "subaortic common iliac node" EXACT [FMA:16644] synonym: "subaortic lymph node" EXACT [FMA:16644] xref: FMA:16644 @@ -363649,6 +383092,8 @@ is_a: UBERON:0015878 {source="FMA"} ! common iliac lymph node [Term] id: UBERON:0037536 name: promontory lymph node +subset: human_subset +subset: mouse_subset synonym: "promontory node" EXACT [FMA:16645] xref: FMA:16645 is_a: UBERON:0015878 {source="FMA"} ! common iliac lymph node @@ -363656,6 +383101,8 @@ is_a: UBERON:0015878 {source="FMA"} ! common iliac lymph node [Term] id: UBERON:0037538 name: medial external iliac lymph node +subset: human_subset +subset: mouse_subset synonym: "medial external iliac node" EXACT [FMA:16647] xref: FMA:16647 is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node @@ -363663,6 +383110,8 @@ is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node [Term] id: UBERON:0037539 name: intermediate external iliac lymph node +subset: human_subset +subset: mouse_subset synonym: "intermediate external iliac node" EXACT [FMA:16648] xref: FMA:16648 is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node @@ -363670,6 +383119,8 @@ is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node [Term] id: UBERON:0037540 name: lateral external iliac lymph node +subset: human_subset +subset: mouse_subset synonym: "lateral external iliac node" EXACT [FMA:16649] xref: FMA:16649 is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node @@ -363677,6 +383128,8 @@ is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node [Term] id: UBERON:0037541 name: interiliac lymph node +subset: human_subset +subset: mouse_subset synonym: "interiliac node" EXACT [FMA:16651] xref: FMA:16651 is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node @@ -363684,6 +383137,8 @@ is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node [Term] id: UBERON:0037548 name: superior gluteal lymph node +subset: human_subset +subset: mouse_subset synonym: "superior gluteal node" EXACT [FMA:16658] xref: FMA:16658 is_a: UBERON:0015883 {source="FMA"} ! gluteal lymph node @@ -363691,6 +383146,8 @@ is_a: UBERON:0015883 {source="FMA"} ! gluteal lymph node [Term] id: UBERON:0037549 name: inferior gluteal lymph node +subset: human_subset +subset: mouse_subset synonym: "inferior gluteal node" EXACT [FMA:16659] xref: FMA:16659 is_a: UBERON:0015883 {source="FMA"} ! gluteal lymph node @@ -363698,12 +383155,16 @@ is_a: UBERON:0015883 {source="FMA"} ! gluteal lymph node [Term] id: UBERON:0037559 name: anorectal lymph node +subset: human_subset +subset: mouse_subset xref: FMA:16669 is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node [Term] id: UBERON:0037560 name: superficial axillary lymph node +subset: human_subset +subset: mouse_subset synonym: "axillary node" BROAD [FMA:12771] xref: FMA:12771 is_a: UBERON:0001097 {source="FMA"} ! axillary lymph node @@ -363711,6 +383172,8 @@ is_a: UBERON:0001097 {source="FMA"} ! axillary lymph node [Term] id: UBERON:0037566 name: diaphragmatic lymph node +subset: human_subset +subset: mouse_subset synonym: "diaphragmatic node" EXACT [FMA:12773] xref: FMA:12773 is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node @@ -363719,6 +383182,8 @@ is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node id: UBERON:0037580 name: left gastric lymph node def: "Gastric lymph node located along the lesser curvature of stomach." [FMA:12797] +subset: human_subset +subset: mouse_subset synonym: "aJCC level 17L node" EXACT [FMA:12797] synonym: "left gastric node" EXACT [FMA:12797] xref: FMA:12797 @@ -363733,6 +383198,8 @@ relationship: part_of RO:0002577 ! system [Term] id: UBERON:0037590 name: lateral axillary lymph node +subset: human_subset +subset: mouse_subset synonym: "brachial axillary node" EXACT [FMA:14186] synonym: "humeral node" EXACT [FMA:14186] synonym: "nodus lymphaticus brachialis axillae" EXACT [FMA:14186] @@ -363742,6 +383209,8 @@ is_a: UBERON:0037560 {source="FMA"} ! superficial axillary lymph node [Term] id: UBERON:0037601 name: left parietal lumbar lymph node +subset: human_subset +subset: mouse_subset synonym: "left parietal lumbar node" EXACT [FMA:16602] xref: FMA:16602 is_a: UBERON:0002526 {source="FMA"} ! lumbar lymph node @@ -363751,6 +383220,8 @@ relationship: in_left_side_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0037614 name: appendicular lymph node +subset: human_subset +subset: mouse_subset synonym: "appendicular node" EXACT [FMA:16620] xref: FMA:16620 is_a: UBERON:0037531 {source="FMA"} ! intestinal lymph node @@ -363758,6 +383229,8 @@ is_a: UBERON:0037531 {source="FMA"} ! intestinal lymph node [Term] id: UBERON:0037615 name: pararectal lymph node +subset: human_subset +subset: mouse_subset synonym: "pararectal node" EXACT [FMA:16621] synonym: "perirectal lymph node" EXACT [FMA:16621] synonym: "rectal lymph node" EXACT [FMA:16621] @@ -363767,6 +383240,8 @@ is_a: UBERON:0037531 {source="FMA"} ! intestinal lymph node [Term] id: UBERON:0037722 name: right retropharyngeal lymph node +subset: human_subset +subset: mouse_subset xref: FMA:224626 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0015869 ! retropharyngeal lymph node @@ -363777,6 +383252,8 @@ relationship: in_right_side_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0037723 name: left retropharyngeal lymph node +subset: human_subset +subset: mouse_subset xref: FMA:224628 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0015869 ! retropharyngeal lymph node @@ -363787,30 +383264,40 @@ relationship: in_left_side_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0037763 name: lateral superior deep cervical lymph node +subset: human_subset +subset: mouse_subset xref: FMA:232351 is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node [Term] id: UBERON:0037764 name: anterior superior deep cervical lymph node +subset: human_subset +subset: mouse_subset xref: FMA:232355 is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node [Term] id: UBERON:0037765 name: lateral inferior deep cervical lymph node +subset: human_subset +subset: mouse_subset xref: FMA:232358 is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node [Term] id: UBERON:0037766 name: anterior inferior deep cervical lymph node +subset: human_subset +subset: mouse_subset xref: FMA:232361 is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node [Term] id: UBERON:0037787 name: right occipital lymph node +subset: human_subset +subset: mouse_subset xref: FMA:232552 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0035204 ! occipital lymph node @@ -363821,6 +383308,8 @@ relationship: in_right_side_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0037788 name: left occipital lymph node +subset: human_subset +subset: mouse_subset xref: FMA:232554 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0035204 ! occipital lymph node @@ -363831,6 +383320,8 @@ relationship: in_left_side_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0037789 name: right apical axillary lymph node +subset: human_subset +subset: mouse_subset xref: FMA:232558 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0037503 ! apical axillary lymph node @@ -363841,6 +383332,8 @@ relationship: in_right_side_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0037790 name: left apical axillary lymph node +subset: human_subset +subset: mouse_subset xref: FMA:232560 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0037503 ! apical axillary lymph node @@ -363851,6 +383344,8 @@ relationship: in_left_side_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0037793 name: right subscapular axillary lymph node +subset: human_subset +subset: mouse_subset xref: FMA:232566 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0037500 ! subscapular axillary lymph node @@ -363861,6 +383356,8 @@ relationship: in_right_side_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0037794 name: left subscapular axillary lymph node +subset: human_subset +subset: mouse_subset xref: FMA:232568 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0037500 ! subscapular axillary lymph node @@ -363871,6 +383368,8 @@ relationship: in_left_side_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0037795 name: right pectoral axillary lymph node +subset: human_subset +subset: mouse_subset xref: FMA:232570 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0037501 ! pectoral axillary lymph node @@ -363881,6 +383380,8 @@ relationship: in_right_side_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0037796 name: left pectoral axillary lymph node +subset: human_subset +subset: mouse_subset xref: FMA:232572 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0037501 ! pectoral axillary lymph node @@ -363891,6 +383392,8 @@ relationship: in_left_side_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0037797 name: right central axillary lymph node +subset: human_subset +subset: mouse_subset xref: FMA:232574 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0037502 ! central axillary lymph node @@ -363901,6 +383404,8 @@ relationship: in_right_side_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0037798 name: left central axillary lymph node +subset: human_subset +subset: mouse_subset xref: FMA:232576 is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0037502 ! central axillary lymph node @@ -363911,54 +383416,72 @@ relationship: in_left_side_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0037865 name: jugular lymph node +subset: human_subset +subset: mouse_subset xref: FMA:232854 is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node [Term] id: UBERON:0037995 name: supramandibular lymph node +subset: human_subset +subset: mouse_subset xref: FMA:234376 is_a: UBERON:0015870 {source="FMA"} ! lymph node of head [Term] id: UBERON:0037998 name: external jugular lymph node +subset: human_subset +subset: mouse_subset xref: FMA:234382 is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node [Term] id: UBERON:0038001 name: sternal lymph node +subset: human_subset +subset: mouse_subset xref: FMA:234388 is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node [Term] id: UBERON:0038002 name: upper intercostal lymph node +subset: human_subset +subset: mouse_subset xref: FMA:234390 is_a: UBERON:0012236 {source="FMA"} ! intercostal lymph node [Term] id: UBERON:0038003 name: lower intercostal lymph node +subset: human_subset +subset: mouse_subset xref: FMA:234392 is_a: UBERON:0012236 {source="FMA"} ! intercostal lymph node [Term] id: UBERON:0038037 name: subclavian lymph node +subset: human_subset +subset: mouse_subset xref: FMA:234498 is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node [Term] id: UBERON:0038048 name: antebrachial lymph node +subset: human_subset +subset: mouse_subset xref: FMA:234527 is_a: UBERON:0016399 {source="FMA"} ! lymph node of upper limb [Term] id: UBERON:0038053 name: cardiophrenic angle lymph node +subset: human_subset +subset: mouse_subset synonym: "cardiophrenic angle node" EXACT [FMA:265353] xref: FMA:265353 is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node @@ -363966,6 +383489,8 @@ is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node [Term] id: UBERON:0038054 name: retrocrural lymph node +subset: human_subset +subset: mouse_subset synonym: "retrocrural node" EXACT [FMA:265356] xref: FMA:265356 is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node @@ -363973,6 +383498,8 @@ is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node [Term] id: UBERON:0038093 name: jejunal lymph node +subset: human_subset +subset: mouse_subset synonym: "jejunal mesentary lymph node" EXACT [FMA:276784] xref: FMA:276784 is_a: UBERON:0002509 {source="FMA"} ! mesenteric lymph node @@ -363980,12 +383507,16 @@ is_a: UBERON:0002509 {source="FMA"} ! mesenteric lymph node [Term] id: UBERON:0038094 name: inferior rectal lymph node +subset: human_subset +subset: mouse_subset xref: FMA:276796 is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node [Term] id: UBERON:0038124 name: medial diaphragmatic lymph node +subset: human_subset +subset: mouse_subset synonym: "medial diaphragmatic node" EXACT [FMA:12807] synonym: "middle diaphragmatic lymph node" EXACT [FMA:12807] xref: FMA:12807 @@ -363994,6 +383525,8 @@ is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node [Term] id: UBERON:0038137 name: parietal pre-aortic lymph node +subset: human_subset +subset: mouse_subset synonym: "parietal pre-aortic node" EXACT [FMA:16603] synonym: "parietal preaortic node" EXACT [FMA:16603] xref: FMA:16603 @@ -364002,6 +383535,8 @@ is_a: UBERON:0037601 {source="FMA"} ! left parietal lumbar lymph node [Term] id: UBERON:0038139 name: retro-aortic lymph node +subset: human_subset +subset: mouse_subset synonym: "post-aortic lymph node" EXACT [FMA:16607] synonym: "postaortic lymph node" EXACT [FMA:16607] synonym: "retro-aortic node" EXACT [FMA:16607] @@ -364012,6 +383547,8 @@ is_a: UBERON:0037601 {source="FMA"} ! left parietal lumbar lymph node [Term] id: UBERON:0038587 name: paracardiac lymph node +subset: human_subset +subset: mouse_subset synonym: "paracardiac node" EXACT [FMA:265350] xref: FMA:265350 is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node @@ -364019,12 +383556,16 @@ is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node [Term] id: UBERON:0038632 name: pericardial lymph node +subset: human_subset +subset: mouse_subset xref: FMA:276807 is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node [Term] id: UBERON:0038633 name: aortopulmonary lymph node +subset: human_subset +subset: mouse_subset synonym: "5 thoracic lymph node" EXACT [FMA:276813] synonym: "aortopulmonary window lymph node" EXACT [FMA:276813] synonym: "mediastinal lymph node station # 5" EXACT [FMA:276813] @@ -364037,6 +383578,8 @@ is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node [Term] id: UBERON:0038634 name: para-aortic thoracic lymph node +subset: human_subset +subset: mouse_subset synonym: "6 thoracic lymph node" EXACT [FMA:276820] synonym: "pre-aortic No. 6 lymph node" EXACT [FMA:276820] synonym: "station 6 lymph node" EXACT [FMA:276820] @@ -364047,6 +383590,8 @@ is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node [Term] id: UBERON:0038635 name: interlobar lymph node +subset: human_subset +subset: mouse_subset synonym: "11 R+L thoracic" EXACT [FMA:276828] synonym: "11 thoracic lymph node" EXACT [FMA:276828] synonym: "station 11 lymph node" EXACT [FMA:276828] @@ -364057,6 +383602,8 @@ is_a: UBERON:0035764 {source="FMA"} ! pulmonary lymph node [Term] id: UBERON:0038638 name: lobar lymph node +subset: human_subset +subset: mouse_subset synonym: "12R+L thoracic lymph node" EXACT [FMA:276849] synonym: "station 12 lymph node" EXACT [FMA:276849] synonym: "station 12 N1 lymph node" EXACT [FMA:276849] @@ -364066,6 +383613,8 @@ is_a: UBERON:0035764 {source="FMA"} ! pulmonary lymph node [Term] id: UBERON:0038641 name: segmental lymph node +subset: human_subset +subset: mouse_subset synonym: "13R+L thoracic lymph node" EXACT [FMA:276855] synonym: "station 13 lymph node" EXACT [FMA:276855] synonym: "station 13 N1 lymph node" EXACT [FMA:276855] @@ -364075,6 +383624,8 @@ is_a: UBERON:0035764 {source="FMA"} ! pulmonary lymph node [Term] id: UBERON:0038647 name: lymph node of inferior pulmonary ligament +subset: human_subset +subset: mouse_subset synonym: "9R+L thoracic lymph node" EXACT [FMA:276867] synonym: "inferior pulmonary ligament lymph node" EXACT [FMA:276867] synonym: "node of inferior pulmonary ligament" EXACT [FMA:276867] @@ -364087,6 +383638,8 @@ is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node [Term] id: UBERON:0038651 name: superior mediastinal lymph node +subset: human_subset +subset: mouse_subset xref: FMA:276903 is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node @@ -364094,6 +383647,8 @@ is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node id: UBERON:0038684 name: superior left gastric lymph node def: "Left gastric lymph node located along the left gastric artery." [FMA:277061] +subset: human_subset +subset: mouse_subset synonym: "jPS 7 node" EXACT [FMA:277061] synonym: "jPS no. 7 node" EXACT [FMA:277061] synonym: "no. 7 left gastric lymph node" EXACT [FMA:277061] @@ -364105,6 +383660,8 @@ is_a: UBERON:0037580 {source="FMA"} ! left gastric lymph node id: UBERON:0038685 name: inferior left gastric lymph node def: "Left gastric lymph node located along the cardiac half of the lesser curvature of stomach in the lesser omentum." [FMA:277064] +subset: human_subset +subset: mouse_subset synonym: "inferior left gastric node" EXACT [FMA:277064] synonym: "jPS 3 node" EXACT [FMA:277064] synonym: "jPS No. 3 node" EXACT [FMA:277064] @@ -364114,6 +383671,8 @@ is_a: UBERON:0037580 {source="FMA"} ! left gastric lymph node [Term] id: UBERON:0038687 name: visceral lymph node of abdomen +subset: human_subset +subset: mouse_subset xref: FMA:277227 is_a: UBERON:0000029 {source="FMA"} ! lymph node is_a: UBERON:0002507 ! abdominal lymph node @@ -364123,6 +383682,8 @@ relationship: part_of UBERON:0000916 ! abdomen id: UBERON:0038691 name: common hepatic lymph node def: "Hepatic lymph node located along the common hepatic artery." [FMA:277259] +subset: human_subset +subset: mouse_subset xref: FMA:277259 is_a: UBERON:0015859 {source="FMA"} ! hepatic lymph node relationship: connected_to UBERON:0002508 {source="FMA"} ! celiac lymph node @@ -364132,6 +383693,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0038694 name: hepatoportal lymph node def: "Hepatic lymph node located along the portal vein." [FMA:277271] +subset: human_subset +subset: mouse_subset synonym: "jPS 12p node" EXACT [FMA:277271] synonym: "jPS No. 12p node" EXACT [FMA:277271] synonym: "no. 12p hepatic lymph node" EXACT [FMA:277271] @@ -364146,6 +383709,8 @@ is_a: UBERON:0015859 {source="FMA"} ! hepatic lymph node id: UBERON:0038695 name: proximal superior pancreatic lymph node def: "Superior pancreatic lymph node located along the proximal segment of splenic artery." [FMA:277295] +subset: human_subset +subset: mouse_subset synonym: "jPS 11p node" EXACT [FMA:277295] synonym: "jPS no. 11p node" EXACT [FMA:277295] synonym: "no. 11p superior pancreatic lymph node" EXACT [FMA:277295] @@ -364159,6 +383724,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:0038696 name: distal superior pancreatic lymph node def: "Superior pancreatic lymph node located along the distal segment of splenic artery." [FMA:277298] +subset: human_subset +subset: mouse_subset synonym: "distal superior pancreaticosplenic lymph node" EXACT [FMA:277298] synonym: "jPS 11d node" EXACT [FMA:277298] synonym: "jPS no. 11d node" EXACT [FMA:277298] @@ -364170,6 +383737,8 @@ is_a: UBERON:0015865 {source="FMA"} ! pancreaticosplenic lymph node id: UBERON:0038697 name: anterior superior pancreaticoduodenal lymph node def: "Superior pancreaticoduodenal lymph node located on the anterior anterior of superior region of head of pancreas." [FMA:277305] +subset: human_subset +subset: mouse_subset synonym: "anterosuperior pancreaticoduodenal lymph node" EXACT [FMA:277305] synonym: "jPS 17a node" EXACT [FMA:277305] synonym: "jPS no. 17a node" EXACT [FMA:277305] @@ -364181,6 +383750,8 @@ is_a: UBERON:0037527 {source="FMA"} ! superior pancreaticoduodenal lymph node id: UBERON:0038698 name: posterior superior pancreaticoduodenal lymph node def: "Superior pancreaticoduodenal lymph node located on the posterior aspect of superior portion of head of pancreas." [FMA:277310] +subset: human_subset +subset: mouse_subset synonym: "jPS 13a node" EXACT [FMA:277310] synonym: "jPS no. 13a node" EXACT [FMA:277310] synonym: "no. 13a pancreaticoduodenal lymph node" EXACT [FMA:277310] @@ -364192,6 +383763,8 @@ is_a: UBERON:0037527 {source="FMA"} ! superior pancreaticoduodenal lymph node id: UBERON:0038699 name: anterior inferior pancreaticoduodenal lymph node def: "Inferior pancreaticoduodenal lymph node located on the anterior aspect of inferior region of head of pancreas." [FMA:277315] +subset: human_subset +subset: mouse_subset synonym: "anteroinferior pancreaticoduodenal lymph node" EXACT [FMA:277315] synonym: "jPS 17b node" EXACT [FMA:277315] synonym: "jPS no. 17b node" EXACT [FMA:277315] @@ -364203,6 +383776,8 @@ is_a: UBERON:0037528 {source="FMA"} ! inferior pancreaticoduodenal lymph node id: UBERON:0038700 name: posterior inferior pancreaticoduodenal lymph node def: "Inferior pancreaticoduodenal lymph node located on the posterior aspect of inferior region of head of pancreas." [FMA:277317] +subset: human_subset +subset: mouse_subset synonym: "jPS 13b node" EXACT [FMA:277317] synonym: "jPS no. 13b node" EXACT [FMA:277317] synonym: "no. 13b pancreaticoduodenal lymph node" EXACT [FMA:277317] @@ -364213,6 +383788,8 @@ is_a: UBERON:0037528 {source="FMA"} ! inferior pancreaticoduodenal lymph node [Term] id: UBERON:0038707 name: anterior pancreaticoduodenal lymph node +subset: human_subset +subset: mouse_subset synonym: "jPS 17 node" EXACT [FMA:277368] synonym: "no. 17 pancreaticoduodenal lymph node" EXACT [FMA:277368] xref: FMA:277368 @@ -364221,6 +383798,8 @@ is_a: UBERON:0016401 {source="FMA"} ! pancreaticoduodenal lymph node [Term] id: UBERON:0038727 name: juxta-intestinal mesenteric lymph node +subset: human_subset +subset: mouse_subset synonym: "mural mesenteric lymph node" EXACT [FMA:277581] synonym: "para-intestinal mesenteric lymph node" EXACT [FMA:277581] xref: FMA:277581 @@ -364230,6 +383809,8 @@ is_a: UBERON:0002509 {source="FMA"} ! mesenteric lymph node id: UBERON:0038734 name: visceral pre-aortic lymph node def: "Intestinal lymph node located anterior to aorta." [FMA:277610] +subset: human_subset +subset: mouse_subset synonym: "visceral para-aortic lymph node" EXACT [FMA:277610] synonym: "visceral pre-aortic node" EXACT [FMA:277610] synonym: "visceral preaortic lymph node" EXACT [FMA:277610] @@ -364239,24 +383820,32 @@ is_a: UBERON:0037531 {source="FMA"} ! intestinal lymph node [Term] id: UBERON:0038735 name: juxta-arterial jejunal lymph node +subset: human_subset +subset: mouse_subset xref: FMA:277614 is_a: UBERON:0037515 {source="FMA"} ! juxta-arterial mesenteric lymph node [Term] id: UBERON:0038736 name: juxta-arterial ileal lymph node +subset: human_subset +subset: mouse_subset xref: FMA:277616 is_a: UBERON:0037515 {source="FMA"} ! juxta-arterial mesenteric lymph node [Term] id: UBERON:0038737 name: intermediate jejunal lymph node +subset: human_subset +subset: mouse_subset xref: FMA:277618 is_a: UBERON:0037514 {source="FMA"} ! intermediate mesenteric lymph node [Term] id: UBERON:0038738 name: intermediate ileal lymph node +subset: human_subset +subset: mouse_subset xref: FMA:277620 is_a: UBERON:0037514 {source="FMA"} ! intermediate mesenteric lymph node @@ -364264,6 +383853,8 @@ is_a: UBERON:0037514 {source="FMA"} ! intermediate mesenteric lymph node id: UBERON:0038746 name: gastro-epiploic lymph node def: "Gastric lymph node located along the greater curvature of stomach." [FMA:277652] +subset: human_subset +subset: mouse_subset synonym: "gastro-epiploic node" EXACT [FMA:277652] synonym: "gastro-omental lymph node" EXACT [FMA:277652] synonym: "gastro-omental node" EXACT [FMA:277652] @@ -364276,18 +383867,24 @@ is_a: UBERON:0015863 {source="FMA"} ! gastric lymph node [Term] id: UBERON:0038784 name: pararectal lymph node of pelvis +subset: human_subset +subset: mouse_subset xref: FMA:278181 is_a: UBERON:0037615 {source="FMA"} ! pararectal lymph node [Term] id: UBERON:0038787 name: superior ileocolic lymph node +subset: human_subset +subset: mouse_subset xref: FMA:278188 is_a: UBERON:0016378 {source="FMA"} ! ileocolic lymph node [Term] id: UBERON:0038796 name: lymph node along bile duct +subset: human_subset +subset: mouse_subset synonym: "biliary lymph node" EXACT [FMA:281309] synonym: "jPS 12b node" EXACT [FMA:281309] synonym: "jPS No. 12b node" EXACT [FMA:281309] @@ -364298,6 +383895,8 @@ is_a: UBERON:0015859 {source="FMA"} ! hepatic lymph node [Term] id: UBERON:0038818 name: posterior ancreaticoduodenal lymph node +subset: human_subset +subset: mouse_subset synonym: "jPS 13 node" EXACT [FMA:304577] synonym: "no. 13 pancreaticoduodenal lymph node" EXACT [FMA:304577] xref: FMA:304577 @@ -364307,6 +383906,8 @@ is_a: UBERON:0016401 {source="FMA"} ! pancreaticoduodenal lymph node id: UBERON:0038849 name: craniocervical lymph node def: "Lymph node located in either head and neck region." [FMA:321555] +subset: human_subset +subset: mouse_subset synonym: "head and neck lymph node" EXACT [FMA:321555] synonym: "lymph node of head and neck" EXACT [FMA:321555] xref: FMA:321555 @@ -364315,18 +383916,24 @@ is_a: UBERON:0000029 {source="FMA"} ! lymph node [Term] id: UBERON:0038853 name: superficial popliteal lymph node +subset: human_subset +subset: mouse_subset xref: FMA:44231 is_a: UBERON:0001543 {source="FMA"} ! popliteal lymph node [Term] id: UBERON:0038854 name: deep popliteal lymph node +subset: human_subset +subset: mouse_subset xref: FMA:44232 is_a: UBERON:0001543 {source="FMA"} ! popliteal lymph node [Term] id: UBERON:0038855 name: superior medial inguinal lymph node +subset: human_subset +subset: mouse_subset synonym: "superomedial node" EXACT [FMA:44297] xref: FMA:44297 is_a: UBERON:0009007 {source="FMA"} ! superficial inguinal lymph node @@ -364334,6 +383941,8 @@ is_a: UBERON:0009007 {source="FMA"} ! superficial inguinal lymph node [Term] id: UBERON:0038856 name: superior lateral inguinal lymph node +subset: human_subset +subset: mouse_subset synonym: "superolateral node" EXACT [FMA:44301] xref: FMA:44301 is_a: UBERON:0009007 {source="FMA"} ! superficial inguinal lymph node @@ -364341,6 +383950,8 @@ is_a: UBERON:0009007 {source="FMA"} ! superficial inguinal lymph node [Term] id: UBERON:0038857 name: inferior inguinal lymph node +subset: human_subset +subset: mouse_subset synonym: "inferior inguinal node" EXACT [FMA:44302] synonym: "subinguinal lymph node" EXACT [FMA:44302] xref: FMA:44302 @@ -364349,6 +383960,8 @@ is_a: UBERON:0009007 {source="FMA"} ! superficial inguinal lymph node [Term] id: UBERON:0038859 name: intermediate deep inguinal lymph node +subset: human_subset +subset: mouse_subset synonym: "cloquet's gland" EXACT [FMA:44304] synonym: "cloquet's node" EXACT [FMA:44304] synonym: "intermediate deep inguinal node" EXACT [FMA:44304] @@ -364362,6 +383975,8 @@ is_a: UBERON:0009006 {source="FMA"} ! deep inguinal lymph node [Term] id: UBERON:0038860 name: distal deep inguinal lymph node +subset: human_subset +subset: mouse_subset synonym: "distal deep inguinal node" EXACT [FMA:44305] synonym: "distal inguinal lymph node" EXACT [FMA:44305] synonym: "nodus inguinales profundi distalis" EXACT OMO:0003011 [FMA:TA] @@ -364372,6 +383987,8 @@ is_a: UBERON:0009006 {source="FMA"} ! deep inguinal lymph node [Term] id: UBERON:0038861 name: tibial lymph node +subset: human_subset +subset: mouse_subset synonym: "tIbial node" EXACT [FMA:44306] xref: FMA:44306 is_a: UBERON:0016398 {source="FMA"} ! lymph node of lower limb @@ -364379,6 +383996,8 @@ is_a: UBERON:0016398 {source="FMA"} ! lymph node of lower limb [Term] id: UBERON:0038864 name: fibular lymph node +subset: human_subset +subset: mouse_subset synonym: "fibular node" EXACT [FMA:44309] synonym: "nodus fibularis" EXACT OMO:0003011 [FMA:TA] synonym: "nodus lymphoideus fibularis" EXACT OMO:0003011 [FMA:TA] @@ -364390,6 +384009,8 @@ is_a: UBERON:0016398 {source="FMA"} ! lymph node of lower limb [Term] id: UBERON:0038867 name: interpectoral lymph node +subset: human_subset +subset: mouse_subset synonym: "interpectoral node" EXACT [FMA:44312] xref: FMA:44312 is_a: UBERON:0016399 {source="FMA"} ! lymph node of upper limb @@ -364397,6 +384018,8 @@ is_a: UBERON:0016399 {source="FMA"} ! lymph node of upper limb [Term] id: UBERON:0038868 name: paramammary lymph node +subset: human_subset +subset: mouse_subset synonym: "paramammary node" EXACT [FMA:44313] xref: FMA:44313 is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node @@ -364404,6 +384027,8 @@ is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node [Term] id: UBERON:0038870 name: cubital lymph node +subset: human_subset +subset: mouse_subset synonym: "cubital node" EXACT [FMA:44315] xref: FMA:44315 is_a: UBERON:0016399 {source="FMA"} ! lymph node of upper limb @@ -364411,6 +384036,8 @@ is_a: UBERON:0016399 {source="FMA"} ! lymph node of upper limb [Term] id: UBERON:0038871 name: supratrochlear lymph node +subset: human_subset +subset: mouse_subset synonym: "supra-epicondylar lymph node" EXACT [FMA:44316] synonym: "supratrochlear node" EXACT [FMA:44316] xref: FMA:44316 @@ -364419,6 +384046,8 @@ is_a: UBERON:0016399 {source="FMA"} ! lymph node of upper limb [Term] id: UBERON:0038878 name: lateral diaphragmatic lymph node +subset: human_subset +subset: mouse_subset synonym: "lateral diaphragmatic node" EXACT [FMA:5935] xref: FMA:5935 is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node @@ -364426,6 +384055,8 @@ is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node [Term] id: UBERON:0038879 name: anterior diaphragmatic lymph node +subset: human_subset +subset: mouse_subset synonym: "anterior diaphragmatic node" EXACT [FMA:5936] xref: FMA:5936 is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node @@ -364433,6 +384064,8 @@ is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node [Term] id: UBERON:0038882 name: posterior diaphragmatic lymph node +subset: human_subset +subset: mouse_subset synonym: "posterior diaphragmatic node" EXACT [FMA:5941] xref: FMA:5941 is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node @@ -364440,6 +384073,8 @@ is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node [Term] id: UBERON:0038885 name: brachiocephalic lymph node +subset: human_subset +subset: mouse_subset synonym: "brachiocephalic node" EXACT [FMA:5944] synonym: "innominate lymph node" EXACT [FMA:5944] xref: FMA:5944 @@ -364448,6 +384083,8 @@ is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node [Term] id: UBERON:0038888 name: posterior mediastinal lymph node +subset: human_subset +subset: mouse_subset synonym: "nodus mediastinale posteriore lymphaticus" EXACT [FMA:5947] synonym: "posterior mediastinal node" EXACT [FMA:5947] xref: FMA:5947 @@ -364456,6 +384093,8 @@ is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node [Term] id: UBERON:0038894 name: paratracheal lymph node +subset: human_subset +subset: mouse_subset synonym: "cervical paratracheal lymph node" EXACT [FMA:5953] synonym: "nodus paratracheale lymphaticus" EXACT [FMA:5953] synonym: "paratracheal node" EXACT [FMA:5953] @@ -364466,6 +384105,8 @@ is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node [Term] id: UBERON:0038897 name: superior tracheobronchial lymph node +subset: human_subset +subset: mouse_subset synonym: "4 thoracic lymph node" EXACT [FMA:5959] synonym: "4R+L thoracic lymph node" EXACT [FMA:5959] synonym: "lower paratracheal lymph node" EXACT [FMA:5959] @@ -364478,6 +384119,8 @@ is_a: UBERON:0015472 {source="FMA"} ! tracheobronchial lymph node [Term] id: UBERON:0038900 name: inferior tracheobronchial lymph node +subset: human_subset +subset: mouse_subset synonym: "carinate lymph node" EXACT [FMA:5962] synonym: "nodus tracheobronchialis inferioris lymphaticus" EXACT [FMA:5962] xref: FMA:5962 @@ -364486,6 +384129,8 @@ is_a: UBERON:0015472 {source="FMA"} ! tracheobronchial lymph node [Term] id: UBERON:0038920 name: buccinator lymph node +subset: human_subset +subset: mouse_subset synonym: "buccinator node" EXACT [FMA:61223] synonym: "nodus buccinatorius" EXACT OMO:0003011 [FMA:TA] synonym: "nodus lymphoideus buccinatorius" EXACT OMO:0003011 [FMA:TA] @@ -364495,6 +384140,8 @@ is_a: UBERON:0015871 {source="FMA"} ! facial lymph node [Term] id: UBERON:0038922 name: nasolabial lymph node +subset: human_subset +subset: mouse_subset synonym: "nasolabial node" EXACT [FMA:61225] synonym: "nodus lymphoideus nasolabialis" EXACT OMO:0003011 [FMA:TA] synonym: "nodus nasolabialis" EXACT OMO:0003011 [FMA:TA] @@ -364504,6 +384151,8 @@ is_a: UBERON:0015871 {source="FMA"} ! facial lymph node [Term] id: UBERON:0038923 name: malar lymph node +subset: human_subset +subset: mouse_subset synonym: "malar node" EXACT [FMA:61226] synonym: "nodus lymphoideus malaris" EXACT OMO:0003011 [FMA:TA] synonym: "nodus malaris" EXACT OMO:0003011 [FMA:TA] @@ -364513,12 +384162,16 @@ is_a: UBERON:0015871 {source="FMA"} ! facial lymph node [Term] id: UBERON:0038925 name: lingual lymph node +subset: human_subset +subset: mouse_subset xref: FMA:61228 is_a: UBERON:0015870 {source="FMA"} ! lymph node of head [Term] id: UBERON:0038929 name: infrahyoid lymph node +subset: human_subset +subset: mouse_subset synonym: "infrahyoid node" EXACT [FMA:61233] xref: FMA:61233 is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node @@ -364526,6 +384179,8 @@ is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node [Term] id: UBERON:0038930 name: prelaryngeal lymph node +subset: human_subset +subset: mouse_subset synonym: "prelaryngeal node" EXACT [FMA:61234] xref: FMA:61234 is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node @@ -364533,6 +384188,8 @@ is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node [Term] id: UBERON:0038931 name: thyroid lymph node +subset: human_subset +subset: mouse_subset synonym: "thyroid node" EXACT [FMA:61235] xref: FMA:61235 is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node @@ -364541,6 +384198,8 @@ relationship: connected_to UBERON:0002046 {source="FMA"} ! thyroid gland [Term] id: UBERON:0038932 name: pretracheal lymph node +subset: human_subset +subset: mouse_subset synonym: "pretracheal node" EXACT [FMA:61236] xref: FMA:61236 is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node @@ -364548,18 +384207,24 @@ is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node [Term] id: UBERON:0038934 name: superior deep lateral cervical lymph node +subset: human_subset +subset: mouse_subset xref: FMA:61238 is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node [Term] id: UBERON:0038935 name: inferior deep lateral cervical lymph node +subset: human_subset +subset: mouse_subset xref: FMA:61239 is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node [Term] id: UBERON:0038936 name: jugulodigastric lymph node +subset: human_subset +subset: mouse_subset synonym: "jugulodigastric node" EXACT [FMA:61240] synonym: "nodus jugulodigastricus" EXACT OMO:0003011 [FMA:TA] synonym: "nodus lymphoideus jugulodigastricus" EXACT OMO:0003011 [FMA:TA] @@ -364569,12 +384234,16 @@ is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node [Term] id: UBERON:0038938 name: accessory cervical lymph node +subset: human_subset +subset: mouse_subset xref: FMA:61242 is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node [Term] id: UBERON:0038943 name: superior diaphragmatic lymph node +subset: human_subset +subset: mouse_subset synonym: "superior diaphragmatic node" EXACT [FMA:66167] xref: FMA:66167 is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node @@ -364583,6 +384252,8 @@ is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node id: UBERON:0038951 name: suprapyloric lymph node def: "Pylorioc lymph node located near the bifurcation of gastroduodenal artery and superior to the pylorus." [FMA:66183] +subset: human_subset +subset: mouse_subset synonym: "jPS 5 node" EXACT [FMA:66183] synonym: "jPS no.5 node" EXACT [FMA:66183] synonym: "no. 5 station pyloric lymph node" EXACT [FMA:66183] @@ -364596,6 +384267,8 @@ is_a: UBERON:0015866 {source="FMA"} ! pyloric lymph node id: UBERON:0038952 name: subpyloric lymph node def: "Pylorioc lymph node located in the angle between the superior and descending parts of duodenum." [FMA:66184] +subset: human_subset +subset: mouse_subset synonym: "infrapyloric lymph node" EXACT [FMA:66184] synonym: "infrapyloric node" EXACT [FMA:66184] synonym: "jPS 6 node" EXACT [FMA:66184] @@ -364608,6 +384281,8 @@ is_a: UBERON:0015866 {source="FMA"} ! pyloric lymph node [Term] id: UBERON:0038953 name: retropyloric lymph node +subset: human_subset +subset: mouse_subset synonym: "retropyloric node" EXACT [FMA:66185] xref: FMA:66185 is_a: UBERON:0015866 {source="FMA"} ! pyloric lymph node @@ -364615,18 +384290,24 @@ is_a: UBERON:0015866 {source="FMA"} ! pyloric lymph node [Term] id: UBERON:0039162 name: inferior ileocolic lymph node +subset: human_subset +subset: mouse_subset xref: FMA:78731 is_a: UBERON:0016378 {source="FMA"} ! ileocolic lymph node [Term] id: UBERON:0039163 name: lateral sacral lymph node +subset: human_subset +subset: mouse_subset xref: FMA:84597 is_a: UBERON:0002528 {source="FMA"} ! sacral lymph node [Term] id: UBERON:0039164 name: medial sacral lymph node +subset: human_subset +subset: mouse_subset xref: FMA:84598 is_a: UBERON:0002528 {source="FMA"} ! sacral lymph node @@ -364634,6 +384315,8 @@ is_a: UBERON:0002528 {source="FMA"} ! sacral lymph node id: UBERON:0039167 name: bronchopulmonary lymph node def: "A tracheobronchial lymph node situated in the hilum of a lung." [https://en.wikipedia.org/w/index.php?title=Tracheobronchial_lymph_nodes&oldid=974745862, https://orcid.org/0000-0002-2825-0621] +subset: human_subset +subset: mouse_subset synonym: "10 R+L thoracic" EXACT [FMA:5965] synonym: "bronchopulmonary node" EXACT [FMA:5965] synonym: "hilar lymph node" EXACT [FMA:5965] @@ -364645,6 +384328,8 @@ is_a: UBERON:0007644 {source="FMA", source="https://orcid.org/0000-0002-2825-062 [Term] id: UBERON:0039168 name: colic lymph node +subset: human_subset +subset: mouse_subset synonym: "colic node" EXACT [FMA:16612] synonym: "pericolic lymph node" EXACT [FMA:16612] synonym: "pericolonic lymph node" EXACT [FMA:16612] @@ -364656,6 +384341,8 @@ is_a: UBERON:0037531 {source="FMA"} ! intestinal lymph node id: UBERON:0039169 name: anterior intercostal artery def: "The anterior intercostal branches of internal thoracic artery supply the upper five or six intercostal spaces." [https://en.wikipedia.org/wiki/Intercostal_arteries] +subset: human_subset +subset: mouse_subset synonym: "intercostal branch of internal thoracic artery" EXACT [FMA:10641] xref: FMA:10641 is_a: UBERON:0005612 ! intercostal artery @@ -364664,6 +384351,8 @@ relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery [Term] id: UBERON:0039170 name: mammary branch of internal thoracic artery +subset: human_subset +subset: mouse_subset synonym: "medial mammary branch of perforating branch of internal thoracic artery" EXACT [FMA:10648] xref: FMA:10648 is_a: UBERON:0004573 ! systemic artery @@ -364672,6 +384361,8 @@ relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery [Term] id: UBERON:0039175 name: subarachnoid space of brain +subset: human_subset +subset: mouse_subset xref: FMA:322073 is_a: UBERON:0000315 {source="FMA"} ! subarachnoid space intersection_of: UBERON:0000315 ! subarachnoid space @@ -364681,6 +384372,8 @@ relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0039176 name: subarachnoid space of spinal cord +subset: human_subset +subset: mouse_subset xref: FMA:322074 is_a: UBERON:0000315 {source="FMA"} ! subarachnoid space intersection_of: UBERON:0000315 ! subarachnoid space @@ -364691,6 +384384,8 @@ relationship: part_of UBERON:0002240 ! spinal cord id: UBERON:0039185 name: accessory vertebral vein def: "A lower continuation of the vertebral vein and vertebral venous plexus that passes through the foramen of the transverse process of the 7th cervical vertebra and empties into the brachiocephalic vein." [https://www.imaios.com/en/e-Anatomy/Anatomical-Parts/Accessory-vertebral-vein] +subset: human_subset +subset: mouse_subset xref: FMA:14290 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001588 ! vertebral vein @@ -364700,6 +384395,8 @@ relationship: tributary_of UBERON:0003711 {source="FMA"} ! brachiocephalic vein id: UBERON:0039186 name: anterior vertebral vein def: "A vein that commences in a plexus around the transverse processes of the upper cervical vertebræ, descends in company with the ascending cervical artery between the Scalenus anterior and Longus capitis muscles, and opens into the terminal part of the vertebral vein." [https://www.imaios.com/en/e-Anatomy/Anatomical-Parts/Anterior-vertebral-vein] +subset: human_subset +subset: mouse_subset xref: FMA:14296 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001588 ! vertebral vein @@ -364709,6 +384406,8 @@ relationship: tributary_of UBERON:0001588 ! vertebral vein id: UBERON:0039187 name: suprascapular vein def: "The suprascapular vein is a vein running above the scapula. It empties into the external jugular vein." [https://en.wikipedia.org/wiki/Suprascapular_vei] +subset: human_subset +subset: mouse_subset xref: FMA:14319 is_a: UBERON:0001638 ! vein relationship: part_of RO:0002577 ! system @@ -364718,6 +384417,8 @@ relationship: tributary_of UBERON:0001101 {source="FMA"} ! external jugular vein id: UBERON:0039188 name: superior laryngeal vein def: "The superior laryngeal vein is a vein which drains the larynx into the superior thyroid vein." [https://en.wikipedia.org/wiki/Superior_laryngeal_vein] +subset: human_subset +subset: mouse_subset xref: FMA:14324 is_a: UBERON:0001638 ! vein relationship: part_of RO:0002577 ! system @@ -364727,6 +384428,8 @@ relationship: tributary_of UBERON:0007157 {source="FMA"} ! superior thyroid vein id: UBERON:0039215 name: appendicular artery def: "An artery that commonly arises from the terminal branch of the ileocolic artery, or less commonly from the posterior cecal artery or an ileal artery.[1][2] It descends behind the termination of the ileum and enters the mesoappendix of the vermiform appendix. It runs near the free margin of the mesoappendix and ends in branches which supply the appendix." [https://en.wikipedia.org/wiki/Appendicular_artery] +subset: human_subset +subset: mouse_subset synonym: "appendiceal artery" EXACT [FMA:14818] xref: FMA:14818 is_a: UBERON:0001637 ! artery @@ -364738,6 +384441,8 @@ relationship: supplies UBERON:0001154 {source="FMA"} ! vermiform appendix id: UBERON:0039222 name: cystic artery def: "An artery that supplies oxygenated blood to the cystic duct." [http://orcid.org/0000-0002-6601-2165, https://en.wikipedia.org/wiki/Cystic_artery] +subset: human_subset +subset: mouse_subset synonym: "cholecystic artery" EXACT [FMA:14835] xref: FMA:14835 is_a: UBERON:0001637 ! artery @@ -364752,6 +384457,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/b [Term] id: UBERON:0039228 name: sigmoid vein +subset: human_subset +subset: mouse_subset xref: FMA:15395 is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein @@ -364764,6 +384471,8 @@ relationship: tributary_of UBERON:0001215 {source="FMA"} ! inferior mesenteric v id: UBERON:0039230 name: prepyloric vein def: "The prepyloric vein is the last connecting branch onto the right gastric vein, marking the end of the stomach, and draining the proximal part of the duodenum" [https://en.wikipedia.org/wiki/Right_gastric_vein#Structure] +subset: human_subset +subset: mouse_subset synonym: "Mayo's vein" EXACT [FMA:15404] xref: FMA:15404 is_a: UBERON:0001638 ! vein @@ -364772,6 +384481,8 @@ is_a: UBERON:0001638 ! vein id: UBERON:0039232 name: conus artery def: "The conus artery is generally considered to be the first branch of the right coronary artery (RCA) in the right sinus of Valsalva. However, one study has shown that in approximately 50% of humans, the conus artery arises from a discrete ostium in the right sinus of Valsalva." [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4805038] +subset: human_subset +subset: mouse_subset synonym: "second right coronary artery" EXACT [FMA:15736] synonym: "third coronary artery" EXACT [FMA:15736] xref: FMA:15736 @@ -364781,6 +384492,8 @@ is_a: UBERON:0001621 {source="FMA"} ! coronary artery id: UBERON:0039256 name: pubic vein def: "vein ascending the posterior aspect of the body of the pubis to drain into the inferior epigastric vein; this vein frequently (about 20% of patients) serves as an accessory or replaced obturator vein." [https://medical-dictionary.thefreedictionary.com/pubic+vein] +subset: human_subset +subset: mouse_subset synonym: "accessory obturator vein" EXACT [FMA:21200, https://medical-dictionary.thefreedictionary.com/pubic+vein] synonym: "pubic branch" EXACT [FMA:21200] synonym: "pubic branch of inferior epigastric vein" EXACT [https://medical-dictionary.thefreedictionary.com/pubic+vein] @@ -364792,6 +384505,8 @@ relationship: tributary_of UBERON:0001316 {source="FMA"} ! external iliac vein [Term] id: UBERON:0039258 name: external vertebral venous plexus +subset: human_subset +subset: mouse_subset synonym: "plexus venosus vertebralis externus" EXACT [FMA:12851] xref: FMA:12851 is_a: UBERON:0039259 ! vertebral venous plexus @@ -364799,12 +384514,16 @@ is_a: UBERON:0039259 ! vertebral venous plexus [Term] id: UBERON:0039259 name: vertebral venous plexus +subset: human_subset +subset: mouse_subset xref: FMA:18935 is_a: UBERON:0001593 {source="FMA"} ! venous plexus [Term] id: UBERON:0039260 name: thyrocervical artery +subset: human_subset +subset: mouse_subset xref: FMA:70346 is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0001533 {source="FMA"} ! subclavian artery @@ -364812,6 +384531,8 @@ relationship: part_of UBERON:0001533 {source="FMA"} ! subclavian artery [Term] id: UBERON:0039261 name: pancreatic artery +subset: human_subset +subset: mouse_subset xref: FMA:70471 is_a: UBERON:0001637 ! artery intersection_of: UBERON:0001637 ! artery @@ -364823,6 +384544,8 @@ relationship: supplies UBERON:0001264 ! pancreas [Term] id: UBERON:0039262 name: segmental pulmonary artery +subset: human_subset +subset: mouse_subset synonym: "segmental pulmonary arterial tree" EXACT [FMA:8755] xref: FMA:8755 is_a: UBERON:0002012 {source="FMA"} ! pulmonary artery @@ -364839,6 +384562,8 @@ replaced_by: UBERON:0006656 id: UBERON:0039288 name: rima vulvae def: "The fissure between the labia majora" [https://www.thefreedictionary.com/pudendal+cleft] +subset: human_subset +subset: mouse_subset synonym: "pudendal cleft" EXACT DEPRECATED [doi:10.1002/ca.23705, FMA:19995] synonym: "rima pudendi" EXACT OMO:0003011 [A09.2.01.006, doi:10.1002/ca.23705] synonym: "urogenital cleft" BROAD [https://www.thefreedictionary.com/pudendal+cleft] @@ -364863,6 +384588,8 @@ is_obsolete: true {source="doi:10.1002/ca.23705"} [Term] id: UBERON:0039351 name: posterior labial artery +subset: human_subset +subset: mouse_subset synonym: "posterior labial branch of internal pudendal artery" EXACT [FMA:20886] xref: FMA:20886 is_a: UBERON:0001637 ! artery @@ -364872,6 +384599,8 @@ relationship: part_of RO:0002577 ! system [Term] id: UBERON:0039355 name: urethral artery +subset: human_subset +subset: mouse_subset synonym: "arteria urethralis" EXACT OMO:0003011 [A12.2.15.042] xref: FMA:20903 is_a: UBERON:0001637 ! artery @@ -364883,6 +384612,8 @@ relationship: supplies UBERON:0000057 ! urethra [Term] id: UBERON:0039376 name: penile bulb vein +subset: human_subset +subset: mouse_subset synonym: "bulb of penis vein" EXACT [FMA:21267] synonym: "vena bulbi penis" EXACT [FMA:21267] xref: FMA:21267 @@ -364897,6 +384628,8 @@ relationship: tributary_of UBERON:0018252 {source="FMA"} ! internal pudendal vei id: UBERON:0039377 name: urethral vein def: "A vein that drains the urethra." [UBERON:cjm] +subset: human_subset +subset: mouse_subset xref: FMA:21270 is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein @@ -364908,6 +384641,8 @@ relationship: tributary_of UBERON:0018252 {source="FMA"} ! internal pudendal vei [Term] id: UBERON:0039379 name: vestibular bulb vein +subset: human_subset +subset: mouse_subset synonym: "vena bulbi vestibuli" EXACT [FMA:21273] xref: FMA:21273 is_a: UBERON:0001638 ! vein @@ -364921,6 +384656,8 @@ relationship: tributary_of UBERON:0018252 {source="FMA"} ! internal pudendal vei id: UBERON:0039418 name: Alcock's canal def: "An anatomical conduit in the pelvis through which the internal pudendal artery, internal pudendal veins, and the pudendal nerve pass." [https://en.wikipedia.org/wiki/Pudendal_canal] +subset: human_subset +subset: mouse_subset synonym: "canalis pudendalis" EXACT OMO:0003011 [A09.5.04.003, doi:10.1002/ca.23705] synonym: "pudendal canal" EXACT DEPRECATED [doi:10.1002/ca.23705, FMA:22071] xref: FMA:22071 @@ -364930,6 +384667,8 @@ is_a: UBERON:0004111 ! anatomical conduit id: UBERON:0039421 name: superficial dorsal vein of penis def: "A vein that drains the prepuce and skin of the penis, and, running backward in the subcutaneous tissue, inclines to the right or left, and opens into the corresponding superficial external pudendal vein, a tributary of the great saphenous vein.." [https://en.wikipedia.org/wiki/Dorsal_veins_of_the_penis] +subset: human_subset +subset: mouse_subset xref: FMA:21384 is_a: UBERON:0039422 ! dorsal vein of penis relationship: drains UBERON:0001331 ! skin of penis @@ -364942,6 +384681,8 @@ relationship: tributary_of UBERON:0009049 {source="FMA"} ! superficial external id: UBERON:0039422 name: dorsal vein of penis def: "One of the superficial dorsal vein of the penis or the deep dorsal vein of the penis." [https://en.wikipedia.org/wiki/Dorsal_veins_of_the_penis] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001638 ! vein is_a: UBERON:0005156 ! reproductive structure union_of: UBERON:0006656 ! deep dorsal vein of penis @@ -364951,11 +384692,15 @@ relationship: part_of UBERON:0000989 ! penis [Term] id: UBERON:0039835 name: posterior intercostal artery +subset: human_subset +subset: mouse_subset is_a: UBERON:0005612 ! intercostal artery [Term] id: UBERON:0039838 name: seventh anterior intercostal artery +subset: human_subset +subset: mouse_subset xref: FMA:10649 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery relationship: part_of UBERON:0006632 {source="FMA"} ! musculo-phrenic artery @@ -364963,6 +384708,8 @@ relationship: part_of UBERON:0006632 {source="FMA"} ! musculo-phrenic artery [Term] id: UBERON:0039839 name: eighth anterior intercostal artery +subset: human_subset +subset: mouse_subset xref: FMA:10650 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery relationship: part_of UBERON:0006632 {source="FMA"} ! musculo-phrenic artery @@ -364970,6 +384717,8 @@ relationship: part_of UBERON:0006632 {source="FMA"} ! musculo-phrenic artery [Term] id: UBERON:0039840 name: ninth anterior intercostal artery +subset: human_subset +subset: mouse_subset xref: FMA:10651 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery relationship: part_of UBERON:0006632 {source="FMA"} ! musculo-phrenic artery @@ -364977,6 +384726,8 @@ relationship: part_of UBERON:0006632 {source="FMA"} ! musculo-phrenic artery [Term] id: UBERON:0039841 name: first anterior intercostal artery +subset: human_subset +subset: mouse_subset synonym: "first intercostal branch of internal thoracic artery" EXACT [FMA:10652] xref: FMA:10652 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery @@ -364985,6 +384736,8 @@ relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery [Term] id: UBERON:0039842 name: second anterior intercostal artery +subset: human_subset +subset: mouse_subset synonym: "second intercostal branch of internal thoracic artery" EXACT [FMA:10653] xref: FMA:10653 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery @@ -364993,6 +384746,8 @@ relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery [Term] id: UBERON:0039843 name: third anterior intercostal artery +subset: human_subset +subset: mouse_subset synonym: "third intercostal branch of internal thoracic artery" EXACT [FMA:10654] xref: FMA:10654 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery @@ -365001,6 +384756,8 @@ relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery [Term] id: UBERON:0039844 name: fourth anterior intercostal artery +subset: human_subset +subset: mouse_subset synonym: "fourth intercostal branch of internal thoracic artery" EXACT [FMA:10655] xref: FMA:10655 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery @@ -365009,6 +384766,8 @@ relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery [Term] id: UBERON:0039845 name: fifth anterior intercostal artery +subset: human_subset +subset: mouse_subset synonym: "fifth intercostal branch of internal thoracic artery" EXACT [FMA:10656] xref: FMA:10656 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery @@ -365017,6 +384776,8 @@ relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery [Term] id: UBERON:0039846 name: sixth anterior intercostal artery +subset: human_subset +subset: mouse_subset synonym: "sixth intercostal branch of internal thoracic artery" EXACT [FMA:10657] xref: FMA:10657 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery @@ -365025,6 +384786,8 @@ relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery [Term] id: UBERON:0039847 name: suprascapular artery +subset: human_subset +subset: mouse_subset synonym: "transverse scapular artery" EXACT [FMA:10663] xref: FMA:10663 is_a: UBERON:0004573 ! systemic artery @@ -365033,18 +384796,24 @@ relationship: part_of UBERON:0039260 {source="FMA"} ! thyrocervical artery [Term] id: UBERON:0039848 name: anterior external vertebral venous plexus +subset: human_subset +subset: mouse_subset xref: FMA:10787 is_a: UBERON:0039258 {source="FMA"} ! external vertebral venous plexus [Term] id: UBERON:0039849 name: posterior external vertebral venous plexus +subset: human_subset +subset: mouse_subset xref: FMA:12852 is_a: UBERON:0039258 {source="FMA"} ! external vertebral venous plexus [Term] id: UBERON:0039850 name: left anterior segmental artery +subset: human_subset +subset: mouse_subset synonym: "anterior bronchopulmonary segment of left pulmonary artery" EXACT [FMA:13279] synonym: "anterior segmental artery of left lung" EXACT [FMA:13279] synonym: "anterior segmental artery of left upper lobe" EXACT [FMA:13279] @@ -365055,6 +384824,8 @@ relationship: part_of UBERON:0001652 ! left pulmonary artery [Term] id: UBERON:0039851 name: apicoposterior segmental artery +subset: human_subset +subset: mouse_subset synonym: "apicoposterior artery of left lung" EXACT [FMA:13281] synonym: "apicoposterior bronchopulmonary segment of left pulmonary artery" EXACT [FMA:13281] synonym: "left apicoposterior pulmonary artery" EXACT [FMA:13281] @@ -365065,6 +384836,8 @@ is_a: UBERON:0039262 {source="FMA"} ! segmental pulmonary artery id: UBERON:0039856 name: right ovarian vein def: "Ovarian vein, each instance of which is a tributary of some inferior vena cava that drains the right pampiniform plexus of some broad ligament." [FMA:14342] +subset: human_subset +subset: mouse_subset xref: FMA:14342 is_a: UBERON:0001145 {source="FMA"} ! ovarian vein intersection_of: UBERON:0001145 ! ovarian vein @@ -365076,6 +384849,8 @@ relationship: tributary_of UBERON:0001072 {source="FMA"} ! inferior vena cava id: UBERON:0039857 name: left ovarian vein def: "Ovarian vein, each instance of which is a tributary of some left renal vein that drains the left pampiniform plexus of some broad ligament." [FMA:14347] +subset: human_subset +subset: mouse_subset xref: FMA:14347 is_a: UBERON:0001145 {source="FMA"} ! ovarian vein intersection_of: UBERON:0001145 ! ovarian vein @@ -365087,6 +384862,8 @@ id: UBERON:0700019 name: parallel fiber def: "A parallel fiber results from the axon of a cerebellar granule cell ascending through the molecular layer where it synapses on the dendritic branches of Purkinje cells and stellate cells." [doi:10.1007/978-94-007-1333-8_63, GO:1990032] comment: This a grouping class for parallel fibers in any species. If annotating a parallel fiber in any species other than teleost fish, consider using 'parallel fiber, bifurcated'. +subset: human_subset +subset: mouse_subset is_a: UBERON:0006134 ! nerve fiber is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: overlaps CL:0001031 ! cerebellar granule cell @@ -365097,6 +384874,8 @@ property_value: dcterms-date "2023-07-10T11:45:59Z" xsd:dateTime id: UBERON:0700020 name: parallel fiber, bifurcated def: "A parallel fiber that results from the bifurcation of a cerebellar granule cell axon in the molecular layer into two diametrically opposed branches, that are oriented parallel to the long axis of the folium." [GO:1990032] +subset: human_subset +subset: mouse_subset is_a: UBERON:0700019 ! parallel fiber disjoint_from: UBERON:2002218 ! parallel fiber, teleost relationship: never_in_taxon NCBITaxon:70862 ! teleost fish @@ -365106,6 +384885,8 @@ property_value: dcterms-date "2023-07-10T11:53:19Z" xsd:dateTime id: UBERON:1000000 name: chin ventral margin def: "Subdivision of the head consisting of the area along the lower edge of the chin." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0008199 ! chin @@ -365116,6 +384897,8 @@ property_value: dc:contributor https://github.com/seger id: UBERON:1000001 name: collection of hairs on vertex def: "A collection of hairs that grows on the vertex (top of head)." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn synonym: "collection of hair on cranium" RELATED [] synonym: "cranial hair" RELATED [] @@ -365129,6 +384912,8 @@ property_value: dc:contributor https://github.com/seger id: UBERON:1000002 name: cranial midline area def: "The middle part of the head, located approximately equidistant from the left and the right sides of the head." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn synonym: "cranial midline" RELATED [] is_a: UBERON:0001444 ! subdivision of head @@ -365141,6 +384926,8 @@ id: UBERON:1000003 name: dewlap def: "A longitudinal flap of skin that hangs beneath the lower jaw or neck." [Wikipedia:Dewlap] comment: Compare with: comb and wattle +subset: human_subset +subset: mouse_subset subset: phenotype_rcn xref: SCTID:13622004 xref: Wikipedia:Dewlap @@ -365151,6 +384938,8 @@ relationship: part_of UBERON:0001456 ! face id: UBERON:1000004 name: collection of hair on external ear def: "A collection of hairs that grows on the external ear." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn synonym: "external ear hair" RELATED [] is_a: UBERON:0014382 ! collection of hairs on head or neck @@ -365165,6 +384954,8 @@ property_value: dc:contributor https://github.com/seger id: UBERON:1000005 name: external ear margin def: "Area along the edge of the external ear." [https://github.com/obophenotype/uberon/issues/34, https://orcid.org/0000-0002-2825-0621, UBERON:EJS] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0001691 ! external ear @@ -365176,6 +384967,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/1795" xsd id: UBERON:1000006 name: collection of hair on forehead def: "A collection of hairs that grows on the forehead." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn is_a: UBERON:0010165 ! collection of hair on face intersection_of: UBERON:0010164 ! collection of hairs @@ -365188,6 +384981,8 @@ property_value: dc:contributor https://github.com/seger id: UBERON:1000007 name: forehead protuberance def: "A bulge, knob, or swelling that protrudes from the forehead." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn is_a: UBERON:0010188 ! protuberance relationship: part_of UBERON:0008200 ! forehead @@ -365198,6 +384993,8 @@ property_value: dc:contributor https://github.com/seger id: UBERON:1000008 name: left part of face def: "Subdivision of the head consisting of the left half of the face, vertically divided." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0015212 ! lateral structure @@ -365210,6 +385007,8 @@ property_value: dc:contributor https://github.com/seger id: UBERON:1000009 name: midline crest def: "A ridge or peak located along the middle part of the head, located approximately equidistant from the left and the right sides of the head." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn is_a: UBERON:0001444 ! subdivision of head relationship: in_taxon NCBITaxon:7742 ! Vertebrata @@ -365221,6 +385020,8 @@ id: UBERON:1000010 name: mole def: "A benign tumor on the skin, usually with darker pigment." [Wikipedia:Melanocytic_nevus] subset: efo_slim +subset: human_subset +subset: mouse_subset subset: phenotype_rcn synonym: "melanocytic nevus" RELATED [] synonym: "naevus" EXACT [ZFA:0005043] @@ -365242,6 +385043,8 @@ property_value: external_definition "An ectopic melanophore accumulation analogo id: UBERON:1000011 name: labial commissure def: "Anatomical structure consisting of either corner of the mouth." [Wikipedia:Labial_commissure_of_mouth] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn synonym: "commissura labiorum oris" RELATED OMO:0003011 [Wikipedia:Labial_commissure_of_mouth] synonym: "commissural lip" RELATED [] @@ -365256,6 +385059,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/90/Co id: UBERON:1000012 name: nose anterior margin def: "Subdivision of the head consisting of the area along the front edge of the external nose." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034929 ! external soft tissue zone @@ -365267,6 +385072,8 @@ property_value: dc:contributor https://github.com/seger id: UBERON:1000013 name: nose vertex def: "The extreme point of curvature of the external nose." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034929 ! external soft tissue zone @@ -365278,6 +385085,8 @@ property_value: dc:contributor https://github.com/seger id: UBERON:1000014 name: right part of face def: "Subdivision of the head consisting of the right half of the face, vertically divided." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0015212 ! lateral structure @@ -365290,6 +385099,7 @@ property_value: dc:contributor https://github.com/seger id: UBERON:1000015 name: skin of snout def: "A zone of skin that is part of the snout." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: mouse_subset subset: phenotype_rcn synonym: "snout skin" EXACT [MA:0003079] xref: EMAPA:37746 {source="MA:th"} @@ -365305,6 +385115,7 @@ property_value: dc:contributor https://github.com/seger id: UBERON:1000016 name: tip of snout def: "Subdivision of the head consisting of the pointed or rounded end or extremity of the snout." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: mouse_subset subset: phenotype_rcn is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0006333 ! snout @@ -365315,6 +385126,8 @@ property_value: dc:contributor https://github.com/seger id: UBERON:1000017 name: tip of external ear def: "Subdivision of the head consisting of the pointed or rounded end or extremity of the external ear." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0001691 ! external ear @@ -365325,6 +385138,8 @@ property_value: dc:contributor https://github.com/seger id: UBERON:1000018 name: cluster of hairs def: "A small collection or tuft of hairs." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn synonym: "tuft of hair" RELATED [] is_a: UBERON:0010164 ! collection of hairs @@ -365335,6 +385150,8 @@ property_value: dc:contributor https://github.com/seger id: UBERON:1000019 name: top of head def: "The top of the head." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: human_subset +subset: mouse_subset subset: phenotype_rcn synonym: "vertex" RELATED [FMA:46484] synonym: "vertex of head" EXACT [FMA:46484] @@ -365349,6 +385166,7 @@ property_value: external_ontology_notes "in the FMA, vertex is a point and not a id: UBERON:1000020 name: collection of hair on snout def: "A collection of hairs that grows on the snout." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: mouse_subset subset: phenotype_rcn is_a: UBERON:0010165 ! collection of hair on face intersection_of: UBERON:0010165 ! collection of hair on face @@ -365363,6 +385181,8 @@ creation_date: 2012-02-05T05:21:29Z id: UBERON:1000021 name: skin of face def: "A zone of skin that is part of the face." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: human_subset +subset: mouse_subset subset: pheno_slim subset: phenotype_rcn synonym: "face skin" EXACT [EMAPA:36657, FMA:24758] @@ -365385,6 +385205,7 @@ creation_date: 2012-02-05T05:23:01Z id: UBERON:1000022 name: Zymbal's gland def: "A multilobulated modified sebaceous gland that is located at the base of the external ear, lined by stratified squamous epithelium, and secretes into the auditory canal." [http://ctrgenpath.net/static/atlas/mousehistology/Windows/senses/zymbalgland.html, ISBN:0123813611, MP:0013384] +subset: mouse_subset synonym: "auditory sebaceous gland" RELATED [ISBN:0123813611] synonym: "gland of Zymbal" RELATED [] synonym: "Zymbal gland" RELATED [MA:0002900] @@ -365404,6 +385225,8 @@ id: UBERON:1000023 name: spleen pulp def: "The parenchyma of the spleen, consisting of lymphocytes and macrophages. It lies between the splenic trabecula. Red pulp is the part suffused with blood and white pulp consists of areas of lymphatic tissue where there are sleeves of lymphocytes and macrophages." [ncithesaurus:Splenic_Pulp] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "Malpighian corpuscles" EXACT [FMA:15845] synonym: "pulp of spleen" EXACT [] synonym: "splenic pulp" EXACT [] @@ -365422,6 +385245,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:1000024 name: parenchyma of spleen def: "A parenchyma that is part of a spleen." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "splenic parenchyma" EXACT [FMA:16029] xref: FMA:16029 is_a: UBERON:0000353 ! parenchyma @@ -365434,6 +385259,8 @@ relationship: part_of UBERON:0002106 ! spleen id: UBERON:1100000 name: digestive tract junction def: "An anatomical junction between two parts of the digestive tract." [https://orcid.org/0000-0002-7073-9172] +subset: human_subset +subset: mouse_subset is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0004921 ! subdivision of digestive tract @@ -365446,6 +385273,8 @@ id: UBERON:1500000 name: scapular blade def: "Enlarged and broad extension of the scapula distal to the glenoid region that conforms to the contour of the ribs. Origin for the major shoulder muscles including the deltoid group." [PHENOSCAPE] comment: In non-tetrapod sarcopterygians the role of the scapula blade is filled by the enlarge cleithrum. +subset: human_subset +subset: mouse_subset is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula @@ -365462,6 +385291,8 @@ relationship: part_of UBERON:0002540 ! lateral line system id: UBERON:1500005 name: ischial cartilage def: "Paired cartilaginous element forming the posterior portion of the pelvic girdle [D.F. Markle, BULLETIN OF MARINE SCIENCE. 30(1): 45-53. 1980]." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element @@ -365564,6 +385395,8 @@ relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue id: UBERON:2000000 name: Brachet's cleft def: "The visible division between epiblast and hypoblast in the gastrula. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000000 is_a: UBERON:0002050 ! embryonic structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -365572,6 +385405,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000001 name: Kupffer's vesicle def: "Small but distinctive epithelial sac containing fluid, located midventrally posterior to the yolk cell or its extension, and transiently present during most of the segmentation period. Kimmel et al, 1995. Kupffer's vesicle has been compared to the mouse embryonic node. Drummond et al, 2005." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000001 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0002533 ! post-anal tail bud @@ -365588,6 +385423,8 @@ is_obsolete: true [Term] id: UBERON:2000004 name: anterior axial hypoblast +subset: human_subset +subset: mouse_subset synonym: "pre-polster" EXACT [ZFIN:ZDB-PUB-051019-5] xref: ZFA:0000004 is_a: UBERON:0005291 ! embryonic tissue @@ -365621,6 +385458,8 @@ is_obsolete: true [Term] id: UBERON:2000033 name: intermediate cell mass of mesoderm +subset: human_subset +subset: mouse_subset synonym: "ICM" EXACT [TAO:0000033] synonym: "intermediate cell mass of Oellacher" EXACT [TAO:0000033] synonym: "posterior intermediate cell mass" EXACT [TAO:0000033] @@ -365635,6 +385474,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000039 name: median axial vein +subset: human_subset +subset: mouse_subset xref: ZFA:0000039 is_a: UBERON:0001638 ! vein property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -365663,6 +385504,8 @@ is_obsolete: true id: UBERON:2000044 name: myotome somite 14 def: "Portion of somite 14 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000044 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000726 ! somite 14 @@ -365684,6 +385527,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000058 name: polster def: "The hatching gland rudiment at the time it underlies the forebrain during the early segmentation period. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "pillow" EXACT [ZFIN:ZDB-PUB-961014-576] xref: ZFA:0000058 is_a: UBERON:0002050 ! embryonic structure @@ -365694,6 +385539,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000068 name: neural plate proneural cluster +subset: human_subset +subset: mouse_subset synonym: "neural plate proneural clusters" EXACT OMO:0003004 [TAO:0000068] synonym: "proneural cluster" RELATED [TAO:0000068] xref: ZFA:0000068 @@ -365712,6 +385559,8 @@ is_obsolete: true id: UBERON:2000072 name: somite 1 def: "Anteriormost undifferentiated mesodermal component of early trunk segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000072 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -365721,6 +385570,8 @@ property_value: somite_number "1" xsd:nonNegativeInteger id: UBERON:2000073 name: somite 5 def: "Undifferentiated mesodermal component of early trunk segment 5 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000073 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -365730,6 +385581,8 @@ property_value: somite_number "5" xsd:nonNegativeInteger id: UBERON:2000074 name: somite 26 def: "Undifferentiated mesodermal component of early tail segment 26 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000074 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -365750,6 +385603,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000083 name: ventral mesoderm +subset: human_subset +subset: mouse_subset xref: ZFA:0000083 is_a: UBERON:0000926 ! mesoderm property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -365758,6 +385613,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000084 name: yolk def: "Nutrient store for embryonic development in the form of semicrystalline phospholipoprotein and contained within yolk granules. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000084 is_a: UBERON:0002050 ! embryonic structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -365766,6 +385623,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000088 name: yolk syncytial layer def: "Peripheral layer of the yolk cell including nuclei and non-yolky cytoplasm. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "periblast" EXACT [ZFIN:ZDB-PUB-961014-576] synonym: "YSL" EXACT [ZFIN:ZDB-PUB-961014-576] xref: ZFA:0000088 @@ -365817,6 +385676,8 @@ replaced_by: CL:0000353 [Term] id: UBERON:2000096 name: cardinal system +subset: human_subset +subset: mouse_subset xref: ZFA:0000096 is_a: UBERON:0004537 ! blood vasculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -365824,6 +385685,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000098 name: proliferative region +subset: human_subset +subset: mouse_subset synonym: "cell cycle" RELATED [TAO:0000098] synonym: "cell division" RELATED [TAO:0000098] synonym: "proliferation" RELATED [TAO:0000098] @@ -365847,6 +385710,8 @@ id: UBERON:2000103 name: supramaxilla def: "Dermal bone that is located on the dorsal margin of the maxilla, usually at the dorso-posterior region of maxilla. The supramaxilla is a paired bone." [TAO:ga_tg] comment: The supramaxilla may be present as one or two bones. +subset: human_subset +subset: mouse_subset is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011597 ! bone of upper jaw relationship: contributes_to_morphology_of UBERON:0001708 ! jaw skeleton @@ -365859,6 +385724,8 @@ id: UBERON:2000104 name: suprapreopercle def: "Dermal bone that is located dorsal to the preopercle or lies on the antero-dorsal corner of the opercle, and encloses the upper section of the preopercular canal. The suprapreopercle is paired." [TAO:GA_TG] comment: Synonyms: supraopercle (Roberts 1969) supraopercular bone (Buckup 1998) +subset: human_subset +subset: mouse_subset synonym: "supraopercle" EXACT [TAO:0000104] synonym: "supraopercular bone" EXACT [TAO:0000104] synonym: "suprapreopercles" EXACT OMO:0003004 [TAO:0000104] @@ -365870,6 +385737,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000106 name: extension def: "The posterior elongated region of the yolk cell that forms during the segmentation period. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "yolk extension" EXACT [ZFIN:ZDB-PUB-961014-576] xref: ZFA:0000106 is_a: UBERON:0000475 ! organism subdivision @@ -365879,6 +385748,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000116 name: macula lagena +subset: human_subset +subset: mouse_subset xref: ZFA:0000116 is_a: UBERON:0000054 ! macula relationship: part_of UBERON:0002518 ! otolith organ @@ -365919,6 +385790,8 @@ id: UBERON:2000127 name: antorbital def: "Dermal bone positioned as the first bone of the infraorbital series. The antorbital articulates with the lacrimal or infraorbital 1 anteroventrally and the supraorbital posterodorsally. The antorbital is a paired bone." [TAO:GA_TG] comment: The antorbital in some teleosts fuses with the lacrimal. The antorbital contains the end branch of the infraorbital canal or neuromasts for the infraorbital canal in basal teleosts such as elopiformes, some osteoglossomorphs and fossil basal teleosts. +subset: human_subset +subset: mouse_subset synonym: "adnasal" EXACT [TAO:Goodrich_1930, TAO:Regan_1923] synonym: "lateral rostral" EXACT [TAO:Jollie_1984] synonym: "periorbital" EXACT [TAO:Bridge_1877] @@ -365945,6 +385818,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000139 name: immature otolith def: "Brightly refractile stone-like organ within the otic vesicle and positioned over a sensory macula; two form in each vesicle during the late segmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for otolith by T. Whitfield.)." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "immature otoliths" EXACT OMO:0003004 [TAO:0000139] is_a: UBERON:0003103 ! compound organ is_a: UBERON:0004121 ! ectoderm-derived structure @@ -365961,6 +385836,8 @@ is_obsolete: true id: UBERON:2000156 name: somite 20 def: "Undifferentiated mesodermal component of early trunk or tail segment 20 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000156 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -365970,6 +385847,8 @@ property_value: somite_number "20" xsd:nonNegativeInteger id: UBERON:2000157 name: somite 30 def: "Posteriormost undifferentiated mesodermal component of early tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000157 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -365978,6 +385857,8 @@ property_value: somite_number "30" xsd:nonNegativeInteger [Term] id: UBERON:2000164 name: ventral mesenchyme +subset: human_subset +subset: mouse_subset xref: ZFA:0000164 is_a: UBERON:0003104 ! mesenchyme property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -365985,6 +385866,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000165 name: inferior lobe +subset: human_subset +subset: mouse_subset synonym: "inferior lobes" EXACT OMO:0003004 [TAO:0000165] xref: ZFA:0000165 is_a: UBERON:0002616 ! regional part of brain @@ -366003,6 +385886,8 @@ replaced_by: UBERON:4000166 id: UBERON:2000168 name: anterior macula def: "Macula that is located in the developing anterior inner ear, and gives rise to the macula utricle. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "am" EXACT [TAO:0000168] xref: ZFA:0000168 is_a: UBERON:0000054 ! macula @@ -366015,6 +385900,8 @@ id: UBERON:2000171 name: interhyal bone def: "Replacement bone that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic." [TAO:wd] comment: It articulates ventrally with the posterior end of the posterior ceratohyal. +subset: human_subset +subset: mouse_subset synonym: "stylohyal bone" EXACT [TAO:0000171] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2001892 ! interhyal element @@ -366025,6 +385912,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000174 name: caudal cerebellar tract +subset: human_subset +subset: mouse_subset xref: ZFA:0000174 is_a: UBERON:0002317 ! white matter of cerebellum relationship: part_of UBERON:2000318 ! brainstem and spinal white matter @@ -366043,6 +385932,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000176 name: lateral entopeduncular nucleus +subset: human_subset +subset: mouse_subset is_a: UBERON:0009663 ! telencephalic nucleus relationship: part_of UBERON:0000204 ! ventral part of telencephalon property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -366050,6 +385941,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000177 name: caudal oblique +subset: human_subset +subset: mouse_subset xref: ZFA:0000177 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -366057,6 +385950,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000178 name: caudal peduncle +subset: human_subset +subset: mouse_subset xref: ZFA:0000178 is_a: UBERON:0003102 ! surface structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -366072,6 +385967,8 @@ is_obsolete: true [Term] id: UBERON:2000182 name: central caudal thalamic nucleus +subset: human_subset +subset: mouse_subset synonym: "central posterior thalamic nucleus" EXACT [TAO:0000182] xref: ZFA:0000182 is_a: UBERON:0015233 ! nucleus of dorsal thalamus @@ -366081,6 +385978,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000183 name: central pretectum +subset: human_subset +subset: mouse_subset xref: ZFA:0000183 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001944 ! pretectal region @@ -366090,6 +385989,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000185 name: commissura rostral, pars ventralis def: "Part of the anterior commissure which abuts the preoptic region dorsally." [ISBN:3764351209] +subset: human_subset +subset: mouse_subset xref: ZFA:0000185 is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0000935 ! anterior commissure @@ -366098,6 +385999,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000187 name: lateral granular eminence +subset: human_subset +subset: mouse_subset is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000307 ! vestibulolateralis lobe property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -366105,6 +386008,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000188 name: corpus cerebelli +subset: human_subset +subset: mouse_subset synonym: "cerebellar corpus" EXACT [TAO:0000188] synonym: "corpus cerebellum" EXACT [TAO:0000188] xref: MESH:D002531 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} @@ -366116,6 +386021,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000193 name: diffuse nuclei +subset: human_subset +subset: mouse_subset xref: ZFA:0000193 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:2000165 ! inferior lobe @@ -366163,6 +386070,8 @@ consider: ZFA:0000197 [Term] id: UBERON:2000199 name: dorsal periventricular hypothalamus +subset: human_subset +subset: mouse_subset xref: ZFA:0000199 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000347 ! dorsal zone of median tuberal portion of hypothalamus @@ -366171,6 +386080,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000201 name: dorsal transverse +subset: human_subset +subset: mouse_subset synonym: "transversus dorsalis" EXACT [TAO:0000201] xref: ZFA:0000201 is_a: UBERON:0000933 ! chordate pharyngeal muscle @@ -366185,7 +386096,6 @@ synonym: "efferent portion of branchial artery" EXACT [] xref: TAO:0000202 xref: ZFA:0000202 is_a: UBERON:0003469 ! respiratory system artery -is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein intersection_of: UBERON:0001637 ! artery intersection_of: branching_part_of UBERON:0004363 ! pharyngeal arch artery @@ -366199,6 +386109,8 @@ relationship: part_of UBERON:0004363 ! pharyngeal arch artery id: UBERON:2000203 name: rhinosphenoid def: "An endochondral bone which is located anterior to the orbitosphenoid and medial to the paired lateral ethmoid. Rhinosphenoid is a median bone." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0010321 ! skeletal element of eye region @@ -366218,6 +386130,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000209 name: lateral preglomerular nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0000209 is_a: UBERON:2002226 ! preglomerular nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum @@ -366226,6 +386140,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000210 name: gigantocellular part of magnocellular preoptic nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0000210 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -366246,6 +386162,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000212 name: granular eminence +subset: human_subset +subset: mouse_subset xref: ZFA:0000212 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum @@ -366254,6 +386172,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000214 name: hypobranchial vessel +subset: human_subset +subset: mouse_subset synonym: "hypobranchial vessels" EXACT OMO:0003004 [TAO:0000214] xref: ZFA:0000214 is_a: UBERON:0003498 ! heart blood vessel @@ -366263,6 +386183,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000216 name: infracarinalis +subset: human_subset +subset: mouse_subset xref: ZFA:0000216 is_a: UBERON:0001774 ! skeletal muscle of trunk relationship: part_of UBERON:0001774 ! skeletal muscle of trunk @@ -366271,6 +386193,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000221 name: internal levator +subset: human_subset +subset: mouse_subset xref: ZFA:0000221 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -366278,6 +386202,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000222 name: isthmic primary nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0000222 is_a: UBERON:0004132 ! trigeminal sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -366287,6 +386213,8 @@ id: UBERON:2000223 name: infraorbital 1 def: "Infraorbital in fishes that is the first (anteriormost) bone of the infraorbital series." [ZFIN:curator] comment: Suborbital and infraorbital 1 are synonymized by some authors (e.g., Cuvier), however, a suborbital bone in fishes has a different meaning than an infraorbital 1; it is a bone(s) that it is placed between the postero-dorsal infraorbitals and preopercle. A suborbital (also named postorbital by some authors) is not present in extant teleosts with the exception of Arapaima where it is occasionally present. Suborbital bones are found in some fossil basal teleosts. [G. Arratia] +subset: human_subset +subset: mouse_subset synonym: "lachrymal" EXACT [PSPUB:0000119] synonym: "lachrymal bone" RELATED [TAO:0000223] synonym: "lacrimal bone" RELATED [TAO:0000223] @@ -366310,6 +386238,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000225 name: lateral crista primordium +subset: human_subset +subset: mouse_subset synonym: "lateral crista primordia" EXACT OMO:0003004 [TAO:0000225] xref: ZFA:0000225 is_a: UBERON:0003240 ! epithelium of lateral semicircular canal @@ -366362,15 +386292,20 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000232 name: lateral semicircular canal primordium +subset: human_subset +subset: mouse_subset synonym: "lateral semicircular canal primordia" EXACT OMO:0003004 [TAO:0000232] xref: ZFA:0000232 is_a: UBERON:2002215 ! otic vesicle protrusion relationship: part_of UBERON:0001840 ! semicircular canal +relationship: part_of UBERON:8450003 ! embryonic craniocervical region property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000233 name: lower oral valve +subset: human_subset +subset: mouse_subset xref: ZFA:0000233 is_a: UBERON:0000479 ! tissue relationship: adjacent_to UBERON:2000695 ! labial cavities @@ -366380,6 +386315,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000234 name: macula neglecta def: "Macula positioned on the floor of the utricle adjacent to the utriculosaccular foramen at the base of the common crus." [ZFA:0000234] +subset: human_subset +subset: mouse_subset xref: ZFA:0000234 is_a: UBERON:0000054 ! macula relationship: develops_from UBERON:2000558 ! posterior macula @@ -366403,6 +386340,8 @@ is_obsolete: true [Term] id: UBERON:2000238 name: olfactory tract linking bulb to ipsilateral ventral telencephalon +subset: human_subset +subset: mouse_subset xref: ZFA:0000238 is_a: UBERON:0002265 ! olfactory tract intersection_of: UBERON:0002265 ! olfactory tract @@ -366414,6 +386353,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000239 name: mesocoracoid bone def: "Endochondral bone that articulates laterally with the medial surface of the cleithrum and ventro-medially with the scapula and coracoid. Meoscoracoid bone is a small, arch-like bone that develops from the mesocoracoid cartilage. Mesocoracoid bone is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "mesocoracoideum" RELATED [TAO:0000239] xref: ZFA:0000239 is_a: UBERON:0002513 ! endochondral bone @@ -366442,6 +386383,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000241 name: midline column +subset: human_subset +subset: mouse_subset xref: ZFA:0000241 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002559 ! medullary reticular formation @@ -366450,6 +386393,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000245 name: nucleus of the descending root +subset: human_subset +subset: mouse_subset xref: ZFA:0000245 is_a: UBERON:0004132 ! trigeminal sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -366464,6 +386409,8 @@ is_obsolete: true [Term] id: UBERON:2000248 name: magnocellular preoptic nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0000248 is_a: UBERON:0007251 ! preoptic nucleus relationship: part_of UBERON:0001928 ! preoptic area @@ -366474,6 +386421,8 @@ id: UBERON:2000250 name: opercle def: "Dermal bone that forms the postero-dorsal part of the opercular series. The opercle articulates with the hyomandibula antero-dorsally and with the subopercle ventrally. The opercle is a paired bone." [TAO:GA_TG] comment: The opercle is usually a large, flat bone that may be partially covered by the posterior region of the preopercle. +subset: human_subset +subset: mouse_subset synonym: "opercles" EXACT OMO:0003004 [TAO:0000250] synonym: "operculare" EXACT [TAO:0000250] synonym: "operculum" EXACT [TAO:0000250] @@ -366519,6 +386468,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000261 name: pharyngohyoid +subset: human_subset +subset: mouse_subset xref: ZFA:0000261 is_a: UBERON:0000933 ! chordate pharyngeal muscle relationship: part_of UBERON:0000933 ! chordate pharyngeal muscle @@ -366528,6 +386479,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000264 name: preopercle def: "Dermal bone that is part of the opercular series and bears the preopercular sensory canal. The preopercle is a paired bone and typically L-shaped, with the horizontal limb overlying the interopercle and the vertical limb overlying the opercle." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "preopercles" EXACT OMO:0003004 [TAO:0000264] synonym: "preoperculum" EXACT [TAO:0000264] xref: ZFA:0000264 @@ -366557,6 +386510,8 @@ is_obsolete: true [Term] id: UBERON:2000267 name: primary olfactory fiber layer +subset: human_subset +subset: mouse_subset xref: ZFA:0000267 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -366604,6 +386559,8 @@ relationship: develops_from UBERON:2200271 ! radial cartilage [Term] id: UBERON:2000274 name: rostral octaval nerve sensory nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0000274 is_a: UBERON:2000401 ! octaval nerve sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -366611,6 +386568,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000276 name: rostrolateral thalamic nucleus of Butler & Saidel +subset: human_subset +subset: mouse_subset xref: ZFA:0000276 is_a: UBERON:0015234 ! nucleus of ventral thalamus relationship: part_of UBERON:0001900 ! ventral thalamus @@ -366619,6 +386578,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000278 name: secondary gustatory nucleus medulla oblongata +subset: human_subset +subset: mouse_subset xref: ZFA:0000278 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata @@ -366652,6 +386613,8 @@ replaced_by: UBERON:0001107 id: UBERON:2000284 name: subopercle def: "Dermal bone that is part of the opercular series, lying below the opercle. The subopercle is paired and is typically a thin bone." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "subopercles" EXACT OMO:0003004 [TAO:0000284] xref: ZFA:0000284 is_a: UBERON:0008907 ! dermal bone @@ -366664,6 +386627,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000285 name: superficial adductor +subset: human_subset +subset: mouse_subset xref: ZFA:0000285 is_a: UBERON:0011145 ! adductor muscle is_a: UBERON:0014794 ! pectoral appendage muscle @@ -366673,6 +386638,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000286 name: superficial lateralis (teleost) +subset: human_subset +subset: mouse_subset xref: ZFA:0000286 is_a: UBERON:0001774 ! skeletal muscle of trunk relationship: part_of UBERON:0001774 ! skeletal muscle of trunk @@ -366689,6 +386656,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000288 name: supracarinalis +subset: human_subset +subset: mouse_subset xref: ZFA:0000288 is_a: UBERON:0001774 ! skeletal muscle of trunk relationship: part_of UBERON:0001774 ! skeletal muscle of trunk @@ -366698,6 +386667,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000289 name: preopercle horizontal limb def: "A dermal bone that is the lower, horizontal portion of the preopercle bone." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "preopercle horizontal arm" EXACT [TAO:0000289] synonym: "preopercle lower limb" EXACT [TAO:0000289] xref: ZFA:0001594 @@ -366710,6 +386681,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000291 name: medial octavolateralis nucleus def: "Lateral line sensory nucleus located in the cerebellum that processes sensory input from the lateral line." [ZFA:0000291] +subset: human_subset +subset: mouse_subset xref: ZFA:0000291 is_a: UBERON:2000381 ! lateral line sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -366717,6 +386690,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000293 name: synencephalon +subset: human_subset +subset: mouse_subset xref: BTO:0006476 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0000293 is_a: UBERON:0002616 ! regional part of brain @@ -366726,6 +386701,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000294 name: torus lateralis +subset: human_subset +subset: mouse_subset xref: ZFA:0000294 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum @@ -366734,6 +386711,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000296 name: uncrossed tecto-bulbar tract +subset: human_subset +subset: mouse_subset xref: ZFA:0000296 is_a: UBERON:0002164 ! tectobulbar tract relationship: part_of UBERON:2000318 ! brainstem and spinal white matter @@ -366742,6 +386721,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000297 name: vagal lobe +subset: human_subset +subset: mouse_subset synonym: "nX" RELATED [TAO:0000297] xref: BTO:0006431 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0007635 ! nucleus of medulla oblongata @@ -366751,6 +386732,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000298 name: vent +subset: human_subset +subset: mouse_subset xref: ZFA:0000298 is_a: UBERON:0003102 ! surface structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -366789,6 +386772,8 @@ consider: ZFA:0000302 [Term] id: UBERON:2000305 name: ventral sulcus +subset: human_subset +subset: mouse_subset xref: ZFA:0000305 is_a: UBERON:0006846 ! surface groove relationship: part_of UBERON:0001898 ! hypothalamus @@ -366797,6 +386782,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000307 name: vestibulolateralis lobe +subset: human_subset +subset: mouse_subset xref: ZFA:0000307 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum @@ -366806,6 +386793,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000309 name: external yolk syncytial layer def: "The portion of the YSL that is outside of the blastoderm margin during epiboly. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "E-YSL" EXACT [ZFIN:ZDB-PUB-961014-576] xref: ZFA:0000309 is_a: UBERON:0005291 ! embryonic tissue @@ -366815,6 +386804,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000311 name: adductor mandibulae complex +subset: human_subset +subset: mouse_subset xref: ZFA:0000311 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010959 ! craniocervical muscle @@ -366834,6 +386825,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000315 name: asteriscus +subset: human_subset +subset: mouse_subset synonym: "lagenar otolith" EXACT [TAO:0000315] synonym: "lagenolith" EXACT [TAO:0000315] xref: ZFA:0000315 @@ -366847,6 +386840,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000318 name: brainstem and spinal white matter def: "CNS white matter that is part of the brain stem or spinal cord." [ZFIN] +subset: human_subset +subset: mouse_subset synonym: "brain stem/spinal tracts and commissures" EXACT OMO:0003004 [TAO:0000318] xref: ZFA:0000318 is_a: UBERON:0002316 ! white matter @@ -366864,6 +386859,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000321 name: caudal levator +subset: human_subset +subset: mouse_subset xref: ZFA:0000321 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -366871,6 +386868,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000322 name: caudal octaval nerve sensory nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0000322 is_a: UBERON:2000401 ! octaval nerve sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -366878,6 +386877,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000324 name: caudal periventricular hypothalamus +subset: human_subset +subset: mouse_subset xref: ZFA:0000324 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:2000634 ! caudal zone of median tuberal portion of hypothalamus @@ -366893,6 +386894,8 @@ is_obsolete: true [Term] id: UBERON:2000335 name: crossed tecto-bulbar tract +subset: human_subset +subset: mouse_subset xref: ZFA:0000335 is_a: UBERON:0002164 ! tectobulbar tract relationship: part_of UBERON:2000318 ! brainstem and spinal white matter @@ -366902,6 +386905,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000336 name: preopercle vertical limb def: "A dermal bone that is the upper, vertical portion of the preopercle bone." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "ascending arm of preopercle" EXACT [TAO:0000336] synonym: "preopercle upper limb" EXACT [TAO:0000336] synonym: "preopercle vertical arm" EXACT [TAO:0000336] @@ -366915,6 +386920,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000337 name: basioccipital posterodorsal region def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001598 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0011164 ! neurocranium bone @@ -366955,6 +386962,8 @@ is_obsolete: true [Term] id: UBERON:2000347 name: dorsal zone of median tuberal portion of hypothalamus +subset: human_subset +subset: mouse_subset is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000392 ! median tuberal portion property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -366963,6 +386972,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000348 name: exoccipital posteroventral region def: "Endochondral bone which is the posterodorsal region of the exoccipital bone." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001597 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0011164 ! neurocranium bone @@ -366973,6 +386984,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000349 name: epaxialis +subset: human_subset +subset: mouse_subset xref: ZFA:0000349 is_a: UBERON:0001774 ! skeletal muscle of trunk relationship: part_of UBERON:0001774 ! skeletal muscle of trunk @@ -366982,6 +386995,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000350 name: epipleural def: "Epipleurals lie below the horizontal septum and are posteroventrally directed. There are ossified epipleurals in certain ostariophysans. In many lower elopocephalan teleosts including ostariophysans the epipleural bones develop an anterodorsal branch so that they are forked proximally." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "epipleurals" EXACT OMO:0003004 [TAO:0000350] synonym: "pleuroïde" EXACT [PSPUB:0000153] synonym: "épipleural" EXACT [PSPUB:0000164] @@ -366993,6 +387008,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000352 name: external cellular layer +subset: human_subset +subset: mouse_subset xref: ZFA:0000352 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -367018,6 +387035,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000358 name: granular layer corpus cerebelli +subset: human_subset +subset: mouse_subset xref: ZFA:0000358 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -367027,6 +387046,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000362 name: hypaxialis +subset: human_subset +subset: mouse_subset xref: ZFA:0000362 is_a: UBERON:0001774 ! skeletal muscle of trunk relationship: part_of UBERON:0001774 ! skeletal muscle of trunk @@ -367036,6 +387057,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000363 name: hypobranchial bone def: "Replacement bone that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000363 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2001893 ! hypobranchial element @@ -367062,6 +387085,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000371 name: internal pharyngoclavicularis +subset: human_subset +subset: mouse_subset xref: ZFA:0000371 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -367069,6 +387094,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000372 name: interpeduncular nucleus medulla oblongata +subset: human_subset +subset: mouse_subset xref: ZFA:0000372 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata @@ -367105,6 +387132,8 @@ id: UBERON:2000376 name: infraorbital alt_id: UBERON:2000489 def: "Dermal bone that is located anterior, ventral or posterior to the eye. Infraorbital bones may or may not contain the infraorbital sensory canal. Infraorbital bones are numbered starting with the anteriormost element of the series." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "circumorbital series" EXACT [TAO:0000376] synonym: "circumorbitals" EXACT OMO:0003004 [TAO:0000376] synonym: "infraorbital series" RELATED [TAO:0000376] @@ -367128,6 +387157,8 @@ is_obsolete: true [Term] id: UBERON:2000381 name: lateral line sensory nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0000381 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata @@ -367137,6 +387168,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000384 name: levator arcus palatini def: "Jaw muscle that connects the sphenotic to the metapterygoid and hyomandibula and promotes the elevation/abduction of the suspensorium." [PMID:18307809] +subset: human_subset +subset: mouse_subset xref: ZFA:0000384 is_a: UBERON:0011648 ! jaw muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -367151,6 +387184,8 @@ replaced_by: UBERON:0011778 [Term] id: UBERON:2000388 name: medial caudal lobe +subset: human_subset +subset: mouse_subset xref: ZFA:0000388 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000307 ! vestibulolateralis lobe @@ -367159,6 +387194,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000389 name: medial funicular nucleus medulla oblongata +subset: human_subset +subset: mouse_subset xref: ZFA:0000389 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata @@ -367167,6 +387204,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000390 name: medial preglomerular nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0000390 is_a: UBERON:2002226 ! preglomerular nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum @@ -367183,6 +387222,8 @@ is_obsolete: true id: UBERON:2000392 name: median tuberal portion def: "Multi-tissue structure which is part of the hypothalamus and consists of caudal and ventral zones, and is separated from the dorsal hypothalamic zone by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] +subset: human_subset +subset: mouse_subset xref: ZFA:0000392 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001898 ! hypothalamus @@ -367191,6 +387232,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000394 name: molecular layer corpus cerebelli +subset: human_subset +subset: mouse_subset xref: ZFA:0000394 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -367208,6 +387251,8 @@ is_obsolete: true [Term] id: UBERON:2000397 name: nucleus subglomerulosis +subset: human_subset +subset: mouse_subset xref: ZFA:0000397 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum @@ -367216,6 +387261,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000398 name: nucleus isthmi +subset: human_subset +subset: mouse_subset xref: ZFA:0000398 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata @@ -367224,6 +387271,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000399 name: secondary gustatory nucleus trigeminal nuclei +subset: human_subset +subset: mouse_subset xref: ZFA:0000399 is_a: UBERON:0004132 ! trigeminal sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -367232,6 +387281,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000401 name: octaval nerve sensory nucleus comment: TO DO: see DOI: 10.1002/cne.902660403 for next steps in defining different octaval nerve nuclei. +subset: human_subset +subset: mouse_subset xref: ZFA:0000401 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata @@ -367248,6 +387299,8 @@ is_obsolete: true [Term] id: UBERON:2000408 name: periventricular nucleus of caudal tuberculum +subset: human_subset +subset: mouse_subset xref: ZFA:0000408 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum @@ -367258,6 +387311,8 @@ id: UBERON:2000410 name: postcleithrum def: "Dermal bone placed postero-medially to the supracleithrum and/or cleithrum." [TAO:GA_TG, TAO:wd] comment: Commonly, the postcleithra form a bilateral series including one to three flat, thin postcleithra of variable shapes (in teleosts). Basal teleosts may have a series up to seven postcleithra (see Arratia 1984 and 1997 and references herein). +subset: human_subset +subset: mouse_subset synonym: "métacleithrum" EXACT [PSPUB:0000131] synonym: "métaclithrum" EXACT [PSPUB:0000131] synonym: "paraclithrum" EXACT [PSPUB:0000143] @@ -367273,6 +387328,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000411 name: posterior crista primordium +subset: human_subset +subset: mouse_subset synonym: "posterior crista primordia" EXACT OMO:0003004 [TAO:0000411] xref: ZFA:0000411 is_a: UBERON:0003239 ! epithelium of posterior semicircular canal @@ -367283,15 +387340,20 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000412 name: posterior semicircular canal primordium +subset: human_subset +subset: mouse_subset synonym: "posterior semicircular canal primordia" EXACT OMO:0003004 [TAO:0000412] xref: ZFA:0000412 is_a: UBERON:2002215 ! otic vesicle protrusion relationship: part_of UBERON:0001840 ! semicircular canal +relationship: part_of UBERON:8450003 ! embryonic craniocervical region property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000414 name: presumptive cephalic mesoderm +subset: human_subset +subset: mouse_subset xref: ZFA:0000414 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000926 ! mesoderm @@ -367301,6 +387363,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000419 name: pterosphenoid def: "Endochondral bone that sutures with the orbitosphenoid anteriorly, the frontal bone dorsally and the sphenotic and prootic posteriorly. The pterosphenoid forms part of the orbitosphenoid region. The pterosphenoid bears foramina that accommodate branches of the trigeminal and facial nerves. The pterosphenoid is a paired bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "alisphenoid" EXACT [TAO:0000419] synonym: "pterosphenoids" EXACT OMO:0003004 [TAO:0000419] xref: ZFA:0000419 @@ -367319,6 +387383,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000422 name: retroarticular def: "The retroarticular is a cartilage bone that forms at the posteroventral tip of Meckel's cartilage where the interoperculomandibular ligament attaches (5.1 mm NL). In the adult it is basically triangular in shape. The retroarticular is ligamentously connected to the interopercle and preopercle posteriorly and abuts the ventral shelf of the dentary anteriorly." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000422 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004768 ! bone of lower jaw @@ -367349,6 +387415,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000426 name: rostral parvocellular preoptic nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0000426 is_a: UBERON:0007251 ! preoptic nucleus is_a: UBERON:2002219 ! parvocellular preoptic nucleus @@ -367359,6 +387427,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000429 name: scaphium def: "Neural arch and Weberian ossicle that is reduced in size relative to other neural arches. Scaphium has a process which articulates with the first centrum." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "second Weberian ossicle" EXACT [TAO:0000429] synonym: "Weberian ossicle 2" EXACT [TAO:0000429] xref: ZFA:0000429 @@ -367370,6 +387440,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000430 name: secondary gustatory tract +subset: human_subset +subset: mouse_subset xref: ZFA:0000430 is_a: UBERON:0014649 ! white matter of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata @@ -367410,6 +387482,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000439 name: superficial pelvic abductor +subset: human_subset +subset: mouse_subset xref: ZFA:0000439 is_a: UBERON:0006845 ! abductor muscle is_a: UBERON:0014795 ! pelvic appendage muscle @@ -367419,6 +387493,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000440 name: superior raphe nucleus +subset: human_subset +subset: mouse_subset synonym: "anterior raphe nucleus" EXACT [TAO:0000440] xref: ZFA:0000440 is_a: UBERON:0006331 ! brainstem nucleus @@ -367430,6 +387506,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000442 name: supraneural bone def: "Endochondral bone that is median and located in the dorsal skeletogenous septum between the cranium and the dorsal fin." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "axonoste libre" EXACT [PSPUB:0000164] synonym: "predorsal" EXACT [TAO:0000442] synonym: "predorsal bone" EXACT [TAO:0000442] @@ -367448,6 +387526,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000448 name: tertiary gustatory nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0000448 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum @@ -367456,6 +387536,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000449 name: torus longitudinalis +subset: human_subset +subset: mouse_subset xref: ZFA:0000449 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002314 ! midbrain tectum @@ -367464,6 +387546,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000451 name: upper oral valve +subset: human_subset +subset: mouse_subset xref: ZFA:0000451 is_a: UBERON:0000479 ! tissue relationship: adjacent_to UBERON:2000695 ! labial cavities @@ -367514,6 +387598,8 @@ is_obsolete: true [Term] id: UBERON:2000459 name: ventromedial thalamic nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0000459 is_a: UBERON:0015234 ! nucleus of ventral thalamus relationship: part_of UBERON:0001900 ! ventral thalamus @@ -367546,6 +387632,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000462 name: abductor hyohyoid +subset: human_subset +subset: mouse_subset xref: ZFA:0000462 is_a: UBERON:0005493 ! hyoid muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -367570,6 +387658,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000465 name: adductor operculi +subset: human_subset +subset: mouse_subset xref: ZFA:0000465 is_a: UBERON:0005493 ! hyoid muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -367585,6 +387675,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000468 name: anterior crista primordium +subset: human_subset +subset: mouse_subset synonym: "anterior crista primordia" EXACT OMO:0003004 [TAO:0000468] xref: ZFA:0000468 is_a: UBERON:0001048 ! primordium @@ -367593,16 +387685,21 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000469 name: anterior semicircular canal primordium +subset: human_subset +subset: mouse_subset synonym: "anterior semicircular canal primordia" EXACT OMO:0003004 [TAO:0000469] xref: ZFA:0000469 is_a: UBERON:2002215 ! otic vesicle protrusion relationship: part_of UBERON:0001840 ! semicircular canal +relationship: part_of UBERON:8450003 ! embryonic craniocervical region property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2000474 name: intercalar def: "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "opisthotic" RELATED [TAO:0000474] xref: ZFA:0000474 is_a: UBERON:0007842 ! membrane bone @@ -367613,6 +387710,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000475 name: paraventricular organ +subset: human_subset +subset: mouse_subset xref: ZFA:0000475 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum @@ -367623,6 +387722,8 @@ id: UBERON:2000476 name: branchiostegal ray def: "Dermal bone that is a flattened element that supports the branchiostegal membrane. Branchiostegal rays are generally present in a series articulating ventrally or ventro-medially with the anterior and posterior ceratobranchials whereas the most posterior ray articulates with the subopercle. The branchiostegal ray is paired." [ZFIN:curator] comment: Although the branchiostegals are articulated or attached to the hyoid arch, they belong to the opercular series. Branchiostegal rays are of variable shape and number and their homology is problematic. Usually they are numbered from anterior to posterior elements, instead from posterior to anteriorly considering that the last element of the series is consistently associated to the subopercle. For a survey of branchiostegal rays see Mc Allister (1968). +subset: human_subset +subset: mouse_subset synonym: "branchiostegal rays" EXACT OMO:0003004 [TAO:0000476] xref: ZFA:0000476 is_a: UBERON:0008907 ! dermal bone @@ -367637,6 +387738,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000479 name: caudal mesencephalo-cerebellar tract +subset: human_subset +subset: mouse_subset xref: ZFA:0000479 is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0004121 ! ectoderm-derived structure @@ -367647,6 +387750,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000480 name: caudal octavolateralis nucleus def: "Hindbrain nucleus which is part of the medulla oblongata and is a mechanoreceptive area along with the medial octavolateralis nucleus. It is smaller than the medial octavolateralis nucleus and is located lateral to the facial and vagal lobes of the medulla oblongata. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] +subset: human_subset +subset: mouse_subset xref: ZFA:0000480 is_a: UBERON:2000381 ! lateral line sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -367654,6 +387759,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000481 name: caudal preglomerular nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0000481 is_a: UBERON:2002226 ! preglomerular nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum @@ -367662,6 +387769,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000482 name: caudal tuberal nucleus +subset: human_subset +subset: mouse_subset synonym: "posterior tuberal nucleus" EXACT [TAO:0000482] xref: ZFA:0000482 is_a: UBERON:0006569 ! diencephalic nucleus @@ -367671,6 +387780,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000484 name: celiacomesenteric artery +subset: human_subset +subset: mouse_subset xref: ZFA:0000484 is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -367678,6 +387789,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000485 name: central nucleus inferior lobe +subset: human_subset +subset: mouse_subset synonym: "central nucleus inferior lobes" EXACT OMO:0003004 [TAO:0000485] xref: ZFA:0000485 is_a: UBERON:0006568 ! hypothalamic nucleus @@ -367695,6 +387808,8 @@ is_obsolete: true id: UBERON:2000488 name: ceratobranchial bone def: "Endochondral bone that is bilaterally paired and forms part of the ventral branchial arches." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "ceratobranchials" EXACT OMO:0003004 [TAO:0000488] xref: ZFA:0000488 is_a: UBERON:0002513 ! endochondral bone @@ -367712,6 +387827,8 @@ is_obsolete: true [Term] id: UBERON:2000492 name: coracoradialis +subset: human_subset +subset: mouse_subset xref: ZFA:0000492 is_a: UBERON:0014794 ! pectoral appendage muscle relationship: part_of UBERON:0007269 ! pectoral appendage musculature @@ -367728,6 +387845,8 @@ is_obsolete: true id: UBERON:2000495 name: infraorbital 5 def: "Infraorbital that is the fifth bone of the infraorbital series." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "dermosphenotic" RELATED [TAO:0000495] xref: ZFA:0000495 is_a: UBERON:2000376 ! infraorbital @@ -367736,6 +387855,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000497 name: pelvic adductor profundus +subset: human_subset +subset: mouse_subset xref: ZFA:0000497 is_a: UBERON:0011144 ! adductor muscle of hip is_a: UBERON:0014795 ! pelvic appendage muscle @@ -367746,6 +387867,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000498 name: dilatator operculi def: "Mandibular muscle that inserts along the dorsolateral faces of the opercles. Responsible for opercular abduction." [https://doi.org/10.1006/dbio.2002.0701, https://doi.org/10.1186/1471-213X-8-24, ZFA:0000498] +subset: human_subset +subset: mouse_subset synonym: "dilator operculi" RELATED [] xref: ZFA:0000498 is_a: UBERON:0011648 ! jaw muscle @@ -367754,6 +387877,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000499 name: dorsal arrector +subset: human_subset +subset: mouse_subset xref: ZFA:0000499 is_a: UBERON:0014794 ! pectoral appendage muscle is_a: UBERON:2002147 ! arrector muscle @@ -367771,6 +387896,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000502 name: dorsal motor nucleus trigeminal nerve +subset: human_subset +subset: mouse_subset synonym: "motor nucleus V" RELATED [TAO:0000502] synonym: "nV" RELATED [TAO:0000502] xref: ZFA:0000502 @@ -367780,6 +387907,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000503 name: dorsal oblique branchial muscle +subset: human_subset +subset: mouse_subset synonym: "dorsal oblique branchial muscles" EXACT OMO:0003004 [TAO:0000503] synonym: "obliquues dorsalis" EXACT [https://repository.si.edu/handle/10088/5206] synonym: "obliquus dorsalis" EXACT [] {comment="https://doi.org/10.1093/sysbio/sys060"} @@ -367790,6 +387919,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000504 name: dorsal retractor +subset: human_subset +subset: mouse_subset xref: ZFA:0000504 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -367805,6 +387936,8 @@ is_obsolete: true id: UBERON:2000507 name: epineural def: "Some or all epineural bones ossify free from the neural arches in most teleosts. In some lower teleosts, e.g., Leptolepis, Hiodon, elopiforms and albuliforms, ossification proceeds from the attachment point of the ligament to the arch, and the epineural is a process of the neural arch. In many lower teleosts epineurals are forked proximally." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000507 is_a: UBERON:2000526 ! intermuscular bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -367827,6 +387960,8 @@ relationship: develops_from UBERON:2001538 ! pelvic radial cartilage [Term] id: UBERON:2000510 name: external levatores +subset: human_subset +subset: mouse_subset xref: ZFA:0000510 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -367834,6 +387969,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000512 name: facial lobe +subset: human_subset +subset: mouse_subset xref: ZFA:0000512 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata @@ -367850,6 +387987,8 @@ is_obsolete: true [Term] id: UBERON:2000516 name: periventricular grey zone +subset: human_subset +subset: mouse_subset xref: ZFA:0000516 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001945 ! superior colliculus @@ -367858,6 +387997,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000517 name: glossopharyngeal lobe +subset: human_subset +subset: mouse_subset xref: ZFA:0000517 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001896 ! medulla oblongata @@ -367873,6 +388014,8 @@ is_obsolete: true [Term] id: UBERON:2000522 name: inferior hyohyoid +subset: human_subset +subset: mouse_subset xref: ZFA:0000522 is_a: UBERON:0005493 ! hyoid muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -367880,6 +388023,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000523 name: inferior reticular formation +subset: human_subset +subset: mouse_subset xref: ZFA:0000523 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:2000542 ! medial column @@ -367903,6 +388048,8 @@ id: UBERON:2000526 name: intermuscular bone def: "Axial bone which is a segmental ossification that forms in the myoseptum." [ZFIN:curator] comment: Intermuscular bones are found in teleosts fishes only. +subset: human_subset +subset: mouse_subset synonym: "métamyoste" EXACT [PSPUB:0000147] synonym: "métaxymyoste" EXACT [PSPUB:0000153] synonym: "os intermusculaire" EXACT [PSPUB:0000164] @@ -367915,6 +388062,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000527 name: pharyngobranchial bone def: "Endochondral bone of the branchial arches located medial to the epibranchials." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "infrapharyngobranchial" EXACT [TAO:0000527] synonym: "infrapharyngobranchial bone" EXACT [] synonym: "pharyngobranchials" EXACT OMO:0003004 [TAO:0000527] @@ -367935,6 +388084,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000530 name: lapillus +subset: human_subset +subset: mouse_subset synonym: "utricular otolith" EXACT [TAO:0000530] synonym: "utriculith" EXACT [TAO:0000530] xref: ZFA:0000530 @@ -367969,6 +388120,8 @@ is_obsolete: true [Term] id: UBERON:2000540 name: magnocellular octaval nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0000540 is_a: UBERON:2000401 ! octaval nerve sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -367986,6 +388139,8 @@ replaced_by: ZFA:0000541 [Term] id: UBERON:2000542 name: medial column +subset: human_subset +subset: mouse_subset xref: ZFA:0000542 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002559 ! medullary reticular formation @@ -368009,6 +388164,8 @@ id: UBERON:2000549 name: posttemporal def: "Dermal bone of the secondary pectoral girdle that attaches the girdle to the skull. Its dorsal process attaches to the epiotic or epioccipital, the ventral process to the intercalar and the body articulates with the supracleithrum. The postotic sensory canal or lateral line runs within or lateral to bone." [TAO:GA_TG] comment: The posttemporal is commonly a Y-shaped bone with two elongate processes. The dorsal process may be equal or longer than the ventral process or the opposite. The ventral process may be absent in some teleosts. +subset: human_subset +subset: mouse_subset synonym: "post-temporal" EXACT [TAO:0000549] synonym: "postemporal" EXACT [TAO:0000549] synonym: "posttemporale" EXACT [TAO:0000549] @@ -368037,6 +388194,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000555 name: opercular flap +subset: human_subset +subset: mouse_subset synonym: "gill cover" EXACT [TAO:0000555] synonym: "opercular apparatus" EXACT [TAO:0000555] synonym: "operculum" RELATED [TAO:0000555] @@ -368061,6 +388220,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000558 name: posterior macula def: "Macula that is located in the developing posterior inner ear, and gives rise to the macula neglecta and the macula saccule. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "pm" EXACT [TAO:0000558] synonym: "posteromedial macula" EXACT [TAO:0000558] xref: ZFA:0000558 @@ -368071,6 +388232,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000564 name: pelvic abductor profundus +subset: human_subset +subset: mouse_subset xref: ZFA:0000564 is_a: UBERON:0006845 ! abductor muscle is_a: UBERON:0014795 ! pelvic appendage muscle @@ -368087,6 +388250,8 @@ is_obsolete: true [Term] id: UBERON:2000573 name: internal cellular layer +subset: human_subset +subset: mouse_subset xref: ZFA:0000573 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -368097,6 +388262,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000576 name: pterotic def: "Endochondral bone that articulates with the autosphenotic anteriorly, the parietal dorsomedially, the prootic ventrally (and the intercalar occasionally), and the epiotic and exoccipital posteriorly. The pterotic encloses the horizontal semicircular canal of the inner ear. The lower edge of the pterotic contributes to the hyomandibular facet. The pterotic is paired." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "autopterotic" EXACT [TAO:0000576] xref: ZFA:0000576 is_a: UBERON:0002513 ! endochondral bone @@ -368113,6 +388280,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000579 name: rostral mesencephalo-cerebellar tract +subset: human_subset +subset: mouse_subset xref: ZFA:0000579 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:2000318 ! brainstem and spinal white matter @@ -368121,6 +388290,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000580 name: rostral preglomerular nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0000580 is_a: UBERON:2002226 ! preglomerular nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum @@ -368129,6 +388300,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000581 name: rostral tuberal nucleus +subset: human_subset +subset: mouse_subset synonym: "anterior tuberal nucleus" EXACT [TAO:0000581] xref: ZFA:0000581 is_a: UBERON:0006568 ! hypothalamic nucleus @@ -368138,6 +388311,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000582 name: saccus dorsalis +subset: human_subset +subset: mouse_subset xref: ZFA:0000582 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -368148,6 +388323,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000585 name: kinethmoid cartilage def: "Cranial cartilage which is a small median cartilage located between the premaxillae and anterodorsal to the ethmoid." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "kinethmoideum cartilage" EXACT [TAO:0000585] xref: ZFA:0000585 is_a: UBERON:0003932 ! cartilage element of chondrocranium @@ -368170,6 +388347,8 @@ id: UBERON:2000587 name: sphenotic def: "Endochondral bone that sutures with the pterosphenoid anteriorly, the prootic ventrally, the frontal bone dorso-medially, and the pterotic dorso-posteriorly. Occasionally the sphenotic sutures with the parietal bone. The sphenotic separates the orbital from the otic region. The sphenotic bears a large antero-lateral or lateral or ventro-lateral process that borders the postero-dorsal margin of the orbit. The sphenotic is a paired bone." [ZFIN:curator] comment: The lower edge of the sphenotic may contribute to the hyomandibular facet depending on the fish group. +subset: human_subset +subset: mouse_subset synonym: "autosphenotic" EXACT [TAO:0000587] synonym: "sphenotics" EXACT OMO:0003004 [TAO:0000587] xref: ZFA:0000587 @@ -368185,6 +388364,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000589 name: sulcus ypsiloniformis +subset: human_subset +subset: mouse_subset xref: ZFA:0000589 is_a: UBERON:0006846 ! surface groove relationship: part_of UBERON:0000203 ! pallium @@ -368193,6 +388374,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000592 name: superficial pelvic adductor +subset: human_subset +subset: mouse_subset xref: ZFA:0000592 is_a: UBERON:0011144 ! adductor muscle of hip is_a: UBERON:0014795 ! pelvic appendage muscle @@ -368202,6 +388385,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000593 name: superior reticular formation medial column +subset: human_subset +subset: mouse_subset xref: ZFA:0000593 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:2000542 ! medial column @@ -368212,6 +388397,8 @@ id: UBERON:2000594 name: supracleithrum def: "Dermal bone that articulates dorsally with the posttemporal and ventrally with the cleithrum. Supracleithrum is part of the secondary pectoral girdle and commonly, carries part of the lateral line canal." [TAO:GA_TG, TAO:wd] comment: The dorsalmost postcleithrum or postcleithrum 1 may lie medial to the ventral part of the supracleithrum. The postotic canal or lateral line may run close to the dorsal margin or in the upper third or in the lowest third of the bone depending on the fish group. +subset: human_subset +subset: mouse_subset synonym: "hypercleithrum" EXACT [PSPUB:0000131] synonym: "supracleithra" EXACT OMO:0003004 [TAO:0000594] synonym: "supracleithrum" EXACT [PSPUB:0000164] @@ -368246,6 +388433,8 @@ replaced_by: UBERON:0011299 [Term] id: UBERON:2000599 name: torus semicircularis +subset: human_subset +subset: mouse_subset xref: ZFA:0000599 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002314 ! midbrain tectum @@ -368302,6 +388491,8 @@ is_obsolete: true [Term] id: UBERON:2000608 name: ventral transverse +subset: human_subset +subset: mouse_subset xref: ZFA:0000608 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -368309,6 +388500,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000609 name: ventrolateral nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0000609 is_a: UBERON:0011214 ! nucleus of midbrain tectum relationship: part_of UBERON:2000599 ! torus semicircularis @@ -368318,6 +388511,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000610 name: vertical myoseptum def: "Connective tissue partitions developing between the myotomes. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "transverse myoseptum" EXACT [TAO:0000610] xref: ZFA:0000610 is_a: UBERON:2001089 ! myoseptum @@ -368326,6 +388521,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000611 name: visceromotor column +subset: human_subset +subset: mouse_subset xref: ZFA:0000611 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001896 ! medulla oblongata @@ -368334,6 +388531,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000614 name: abductor profundus +subset: human_subset +subset: mouse_subset xref: ZFA:0000614 is_a: UBERON:0006845 ! abductor muscle is_a: UBERON:0014794 ! pectoral appendage muscle @@ -368343,6 +388542,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000615 name: adductor arcus palatini +subset: human_subset +subset: mouse_subset xref: ZFA:0000615 is_a: UBERON:0005493 ! hyoid muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -368350,6 +388551,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000616 name: adductor profundus +subset: human_subset +subset: mouse_subset xref: ZFA:0000616 is_a: UBERON:0011145 ! adductor muscle is_a: UBERON:0014794 ! pectoral appendage muscle @@ -368394,6 +388597,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000622 name: barbel def: "Surface structure which is a tactile structure found in the branchial region. Barbels are covered with epidermis rich in taste buds, and are innervated by branches of the cranial nerves." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "barbels" EXACT OMO:0003004 [TAO:0000622] synonym: "barble" EXACT [TAO:0000622] xref: ZFA:0000622 @@ -368407,6 +388612,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000623 name: basipterygium bone def: "Basipterygium element that is composed of bone tissue." [OBOL:automatic] +subset: human_subset +subset: mouse_subset synonym: "basipterygia" EXACT OMO:0003004 [TAO:0000623] synonym: "basipterygium ischiatique" EXACT [PSPUB:0000145] synonym: "os pelvien" EXACT [PSPUB:0000164] @@ -368443,6 +388650,8 @@ id: UBERON:2000627 name: posterior ceratohyal def: "Replacement bone that is bilaterally paired and articulates anteriorly with the anterior ceratohyal." [ZFIN:curator] comment: Posterohyal is used in Rapp Py Daniel (1997). +subset: human_subset +subset: mouse_subset synonym: "caudal ceratohyal" EXACT [TAO:0000627] synonym: "epihyal" EXACT [TAO:0000627] synonym: "posterohyal" EXACT [TAO:0000627] @@ -368468,6 +388677,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000629 name: caudal motor nucleus of abducens def: "Caudal part of the abducens nucleus that mediates motor function." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset xref: ZFA:0000629 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus @@ -368477,6 +388688,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000630 name: caudal parvocellular preoptic nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0000630 is_a: UBERON:0007251 ! preoptic nucleus is_a: UBERON:2002219 ! parvocellular preoptic nucleus @@ -368486,6 +388699,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000633 name: caudal tuberculum +subset: human_subset +subset: mouse_subset synonym: "posterior tubercle" EXACT [TAO:0000633] synonym: "posterior tuberculum" EXACT [TAO:0000633] xref: ZFA:0000633 @@ -368496,6 +388711,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000634 name: caudal zone of median tuberal portion of hypothalamus +subset: human_subset +subset: mouse_subset is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000392 ! median tuberal portion property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -368510,6 +388727,8 @@ is_obsolete: true [Term] id: UBERON:2000636 name: cerebellar crest +subset: human_subset +subset: mouse_subset xref: ZFA:0000636 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -368534,6 +388753,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000638 name: commissura rostral, pars dorsalis def: "Part of the anterior commissure which is located immediately ventral to the supracommissural nucleus of area ventralis telencephali." [ISBN:3764351209] +subset: human_subset +subset: mouse_subset xref: ZFA:0000638 is_a: UBERON:0002437 ! cerebral hemisphere white matter relationship: part_of UBERON:0000935 ! anterior commissure @@ -368542,6 +388763,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000639 name: commissure of the secondary gustatory nuclei +subset: human_subset +subset: mouse_subset xref: ZFA:0000639 is_a: UBERON:0002317 ! white matter of cerebellum relationship: part_of UBERON:2000318 ! brainstem and spinal white matter @@ -368557,6 +388780,8 @@ is_obsolete: true [Term] id: UBERON:2000643 name: rostral cerebellar tract +subset: human_subset +subset: mouse_subset xref: ZFA:0000643 is_a: UBERON:0002316 ! white matter relationship: part_of UBERON:2000318 ! brainstem and spinal white matter @@ -368572,6 +388797,8 @@ is_obsolete: true [Term] id: UBERON:2000645 name: descending octaval nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0000645 is_a: UBERON:2000401 ! octaval nerve sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -368592,6 +388819,8 @@ relationship: develops_from UBERON:2200646 ! anal fin distal radial cartilage [Term] id: UBERON:2000647 name: dorsal caudal thalamic nucleus +subset: human_subset +subset: mouse_subset synonym: "dorsal posterior thalamic nucleus" EXACT [TAO:0000647] xref: ZFA:0000647 is_a: UBERON:0015233 ! nucleus of dorsal thalamus @@ -368616,6 +388845,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000651 name: dorsal pelvic arrector +subset: human_subset +subset: mouse_subset xref: ZFA:0000651 is_a: UBERON:0014795 ! pelvic appendage muscle is_a: UBERON:2002147 ! arrector muscle @@ -368626,6 +388857,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000654 name: rostral motor nucleus of abducens def: "Rostral part of the abducens nucleus that mediates motor function." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset xref: ZFA:0000654 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus @@ -368643,6 +388876,8 @@ is_obsolete: true id: UBERON:2000657 name: entopterygoid def: "Dermal bone that forms the ventro-medial part of the palate and the antero-ventral and ventral wall of the orbit. The entopterygoid is a paired bone." [TAO:GA_TG] +subset: human_subset +subset: mouse_subset synonym: "endopterygoid bone" EXACT [] synonym: "mesopterygoid" EXACT [TAO:0000657] xref: ZFA:0000657 @@ -368656,6 +388891,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000658 name: epibranchial bone def: "Dorsal branchial arch bone that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone and medially with pharyngobranchial cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "epibranchial bones" EXACT OMO:0003004 [TAO:0000658] xref: ZFA:0000658 is_a: UBERON:0002513 ! endochondral bone @@ -368681,6 +388918,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000662 name: external pharyngoclavicularis +subset: human_subset +subset: mouse_subset xref: ZFA:0000662 is_a: UBERON:0000933 ! chordate pharyngeal muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -368691,6 +388930,8 @@ name: extrascapula alt_id: UBERON:2001413 def: "Dermal canal-bearing bone placed at the dorso-posterior region of the skull roof, lying on the posterior region of the pterotic and parietals, or the pterotic and epioccipital, or on the pterotic, epioccipital and occipital bones." [TAO:GA_TG, TAO:wd] comment: When it is present, the paired series of extrascapular bones may include one pair or two pairs or two pairs plus a median one. The most lateral is named lateral extrascapula and is the bone where the intersection of the otic, postotic and extrascapular or supratemporal canals occur. The medial and median extrascapulars carry the extrascapular or supratemporal canal. +subset: human_subset +subset: mouse_subset synonym: "extrascapular" EXACT [TAO:0000663] synonym: "extrascapular bone" EXACT [TAO:0000663] synonym: "scale bone" EXACT [TAO:0000663] @@ -368716,6 +388957,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000673 name: hypobranchial artery def: "A pair of HA are connect one to each AA1. They run rostromedially until at the extreme rostro-ventral midline the two vessels merge and then run straight caudally along the ventral midline until they reach the cranial end of the ventral aorta (VA). There, the single HA passes just dorsal to the rostral end of the VA and then immediately splits again into a pair of HA. The paired HA continue caudally just to either side of the ventral midline. The HA provide blood supply to the ventral branchial region and the heart.sogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "HA" EXACT [TAO:0000673] xref: ZFA:0000673 is_a: UBERON:0001637 ! artery @@ -368726,6 +388969,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000674 name: interopercle def: "Dermal bone that is part of the opercular series. It is located ventro-medially to the preopercle and anterior to the subopercle. It is joined to the posterior part of the lower jaw (retroarticular) by a ligament. The interopercle is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "interopercles" EXACT OMO:0003004 [TAO:0000674] xref: ZFA:0000674 is_a: UBERON:0008907 ! dermal bone @@ -368739,6 +388984,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000676 name: sagitta +subset: human_subset +subset: mouse_subset synonym: "saccular otolith" EXACT [TAO:0000676] synonym: "sacculith" EXACT [TAO:0000676] xref: ZFA:0000676 @@ -368750,6 +388997,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000677 name: segmental intercostal artery subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "segmental intercostal arteries" EXACT OMO:0003004 [TAO:0000677] xref: EFO:0003558 xref: TAO:0000677 @@ -368768,6 +389017,8 @@ is_obsolete: true [Term] id: UBERON:2000685 name: superficial abductor +subset: human_subset +subset: mouse_subset xref: ZFA:0000685 is_a: UBERON:0006845 ! abductor muscle is_a: UBERON:0014794 ! pectoral appendage muscle @@ -368777,6 +389028,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000687 name: superficial pretectum +subset: human_subset +subset: mouse_subset xref: ZFA:0000687 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001944 ! pretectal region @@ -368809,6 +389062,8 @@ id: UBERON:2000691 name: supraorbital bone def: "Dermal bone that is part of the dorsal or upper border or antero-dorsal border of the orbit. The supraorbital bone may contact the orbital margin of the frontal bone medially, the antorbital antero-ventrally and the dermosphenotic posteriorly. The supraorbital bone does not carry sensory canals. The supraorbital bone is paired." [TAO:GA_TG] comment: The supraorbital bone may be present as two or one bone in extant teleosts, although many of the advanced forms lack the bone. +subset: human_subset +subset: mouse_subset xref: ZFA:0000691 is_a: UBERON:0003462 ! facial bone is_a: UBERON:0008907 ! dermal bone @@ -368823,6 +389078,8 @@ id: UBERON:2000692 name: symplectic def: "Replacement bone that is bilaterally paired and articulates with the hyomandibula and the quadrate." [ZFIN:curator] comment: When the interhyal bone or cartilage is present it articulates at the articulation of the hyomandibula and symplectic. +subset: human_subset +subset: mouse_subset xref: ZFA:0000692 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from UBERON:0011607 ! hyomandibular cartilage @@ -368833,6 +389090,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000693 name: tangential nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0000693 is_a: UBERON:2000401 ! octaval nerve sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -368842,6 +389101,8 @@ id: UBERON:2000694 name: ceratobranchial 5 tooth def: "Tooth that forms on ceratobranchial 5 cartilage or bone." [ZFIN:curator] comment: Ceratobranchial 5 teeth are the only teeth present in zebrafish and other cypriniforms. +subset: human_subset +subset: mouse_subset synonym: "pharyngeal teeth" EXACT [TAO:0000694] xref: ZFA:0000694 is_a: UBERON:0001091 ! calcareous tooth @@ -368856,6 +389117,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000695 name: labial cavities +subset: human_subset +subset: mouse_subset xref: ZFA:0000695 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001007 ! digestive system @@ -368880,6 +389143,8 @@ id: UBERON:2000699 name: entopterygoid vertical strut def: "Process that is the dorsally directed, vertical process of the entopterygoid. The strut sometimes articulates with the orbitosphenoid." [TAO:wd] comment: Fink and Fink 1981, present in gymnotoids. +subset: human_subset +subset: mouse_subset synonym: "endopterygoid vertical strut" EXACT [TAO:0000699] synonym: "mesopterygoid vertical strut" EXACT [TAO:0000699] is_a: UBERON:0010313 ! neural crest-derived structure @@ -368890,6 +389155,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000701 name: ventral arrector +subset: human_subset +subset: mouse_subset xref: ZFA:0000701 is_a: UBERON:0014794 ! pectoral appendage muscle is_a: UBERON:2002147 ! arrector muscle @@ -368899,6 +389166,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000703 name: ventral motor nucleus trigeminal nerve +subset: human_subset +subset: mouse_subset xref: ZFA:0000703 is_a: UBERON:0002633 ! motor nucleus of trigeminal nerve property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -368906,6 +389175,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000704 name: ventral pelvic arrector +subset: human_subset +subset: mouse_subset xref: ZFA:0000704 is_a: UBERON:0014795 ! pelvic appendage muscle is_a: UBERON:2002147 ! arrector muscle @@ -368915,6 +389186,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000707 name: ventral zone +subset: human_subset +subset: mouse_subset xref: ZFA:0000707 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:2000392 ! median tuberal portion @@ -368930,6 +389203,8 @@ is_obsolete: true [Term] id: UBERON:2000710 name: viscerosensory commissural nucleus of Cajal +subset: human_subset +subset: mouse_subset xref: ZFA:0000710 is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata @@ -368939,6 +389214,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000711 name: deep cell layer (gastrulation) def: "A multilayer of deep cells of fairly uniform thickness that forms during early epiboly (at dome stage; upon conversion of the blastodisc to the blastoderm); during gastrulation the DEL (deep cell layer) gives rise to the epiblast and hypoblast. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "DEL" EXACT OMO:0003000 [ZFIN:ZDB-PUB-961014-576] synonym: "DEL cells" EXACT OMO:0003004 [TAO:0000711] xref: ZFA:0000711 @@ -368950,6 +389227,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000712 name: internal yolk syncytial layer def: "The portion of the YSL that lies deep to the blastoderm during epiboly. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "I-YSL" EXACT [ZFIN:ZDB-PUB-961014-576] xref: ZFA:0000712 is_a: UBERON:0005291 ! embryonic tissue @@ -368966,6 +389245,8 @@ is_obsolete: true [Term] id: UBERON:2000715 name: adductor hyohyoid +subset: human_subset +subset: mouse_subset xref: ZFA:0000715 is_a: UBERON:0005493 ! hyoid muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -368979,7 +389260,6 @@ synonym: "afferent portion of branchial artery" EXACT [] xref: TAO:0000716 xref: ZFA:0000716 is_a: UBERON:0003469 ! respiratory system artery -is_a: UBERON:0003496 ! head blood vessel intersection_of: UBERON:0001637 ! artery intersection_of: branching_part_of UBERON:0004363 ! pharyngeal arch artery intersection_of: supplies UBERON:0011150 ! pharyngeal arch derived gill @@ -369003,6 +389283,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000718 name: epaxial region somite 27 def: "The epaxial region of somite 27 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000718 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000931 ! myotome somite 27 @@ -369060,6 +389342,8 @@ is_obsolete: true id: UBERON:2000725 name: somite 11 def: "Undifferentiated mesodermal component of early trunk segment 11 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000725 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -369069,6 +389353,8 @@ property_value: somite_number "11" xsd:nonNegativeInteger id: UBERON:2000726 name: somite 14 def: "Undifferentiated mesodermal component of early trunk segment 14 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000726 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -369078,6 +389364,8 @@ property_value: somite_number "14" xsd:nonNegativeInteger id: UBERON:2000727 name: somite 17 def: "Undifferentiated mesodermal component of early trunk segment 17 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000727 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -369087,6 +389375,8 @@ property_value: somite_number "17" xsd:nonNegativeInteger id: UBERON:2000728 name: somite 2 def: "Undifferentiated mesodermal component of early trunk segment 2 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000728 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -369096,6 +389386,8 @@ property_value: somite_number "2" xsd:nonNegativeInteger id: UBERON:2000729 name: epaxial region somite 3 def: "The epaxial region of somite 3 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000729 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000932 ! myotome somite 3 @@ -369105,6 +389397,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000730 name: somite 23 def: "Undifferentiated mesodermal component of early tail segment 23 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000730 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -369114,6 +389408,8 @@ property_value: somite_number "23" xsd:nonNegativeInteger id: UBERON:2000731 name: somite 27 def: "Undifferentiated mesodermal component of early tail segment 27 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000731 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -369123,6 +389419,8 @@ property_value: somite_number "27" xsd:nonNegativeInteger id: UBERON:2000732 name: somite 3 def: "Undifferentiated mesodermal component of early trunk segment 3 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000732 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -369132,6 +389430,8 @@ property_value: somite_number "3" xsd:nonNegativeInteger id: UBERON:2000733 name: somite 7 def: "Undifferentiated mesodermal component of early trunk segment 7 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000733 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -369154,6 +389454,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000735 name: hemal postzygapophysis def: "Paired, ventromedially directed processes on the posterior ends of the centra, ligamentously joined to the hemal postzygapophyses of the immediately posterior vertebra. The most posterior caudal vertebrae lack hemal postzygapophyses." [ZFIN:curator] +subset: mouse_subset synonym: "haemal postzygapophysis" EXACT [TAO:0000735] synonym: "hemal postygopophysis" EXACT [TAO:0000735] synonym: "hemal postzygapophyses" EXACT OMO:0003004 [TAO:0000735] @@ -369167,6 +389468,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000739 name: epaxial region somite 11 def: "The epaxial region of somite 11 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000739 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000801 ! myotome somite 11 @@ -369176,6 +389479,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000740 name: epaxial region somite 5 def: "The epaxial region of somite 5 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000740 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000933 ! myotome somite 5 @@ -369185,6 +389490,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000741 name: epaxial region somite 14 def: "The epaxial region of somite 14 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000741 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000044 ! myotome somite 14 @@ -369194,6 +389501,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000742 name: epaxial region somite 17 def: "The epaxial region of somite 17 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000742 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001015 ! myotome somite 17 @@ -369203,6 +389512,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000743 name: epaxial region somite 2 def: "The epaxial region of somite 2 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000743 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001016 ! myotome somite 2 @@ -369212,6 +389523,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000744 name: epaxial region somite 22 def: "The epaxial region of somite 22 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000744 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001017 ! myotome somite 22 @@ -369221,6 +389534,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000745 name: epaxial region somite 25 def: "The epaxial region of somite 25 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000745 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001018 ! myotome somite 25 @@ -369230,6 +389545,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000746 name: epaxial region somite 28 def: "The epaxial region of somite 28 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000746 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001019 ! myotome somite 28 @@ -369239,6 +389556,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000747 name: epaxial region somite 30 def: "The epaxial region of somite 30 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000747 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001020 ! myotome somite 30 @@ -369248,6 +389567,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000748 name: epaxial region somite 6 def: "The epaxial region of somite 6 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000748 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001021 ! myotome somite 6 @@ -369257,6 +389578,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000749 name: epaxial region somite 9 def: "The epaxial region of somite 9 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000749 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001022 ! myotome somite 9 @@ -369274,6 +389597,8 @@ is_obsolete: true id: UBERON:2000751 name: epaxial region somite 8 def: "The epaxial region of somite 8 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000751 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000934 ! myotome somite 8 @@ -369364,6 +389689,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000767 name: hypaxial region somite 11 def: "The hypaxial region of somite 11 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000767 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000801 ! myotome somite 11 @@ -369373,6 +389700,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000768 name: hypaxial region somite 14 def: "The hypaxial region of somite 14 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000768 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000044 ! myotome somite 14 @@ -369382,6 +389711,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000769 name: hypaxial region somite 17 def: "The hypaxial region of somite 17 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000769 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001015 ! myotome somite 17 @@ -369391,6 +389722,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000770 name: hypaxial region somite 2 def: "The hypaxial region of somite 2 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000770 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001016 ! myotome somite 2 @@ -369400,6 +389733,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000771 name: hypaxial region somite 22 def: "The hypaxial region of somite 22 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000771 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001017 ! myotome somite 22 @@ -369409,6 +389744,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000772 name: hypaxial region somite 25 def: "The hypaxial region of somite 25 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000772 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001018 ! myotome somite 25 @@ -369426,6 +389763,8 @@ is_obsolete: true id: UBERON:2000774 name: hypaxial region somite 28 def: "The hypaxial region of somite 28 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000774 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001019 ! myotome somite 28 @@ -369435,6 +389774,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000775 name: hypaxial region somite 30 def: "The hypaxial region of somite 30 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000775 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001020 ! myotome somite 30 @@ -369444,6 +389785,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000776 name: hypaxial region somite 6 def: "The hypaxial region of somite 6 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000776 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001021 ! myotome somite 6 @@ -369453,6 +389796,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000777 name: hypaxial region somite 9 def: "The hypaxial region of somite 9 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000777 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001022 ! myotome somite 9 @@ -369469,6 +389814,8 @@ replaced_by: CL:0005000 [Term] id: UBERON:2000779 name: lateral forebrain bundle telencephalon +subset: human_subset +subset: mouse_subset xref: ZFA:0000779 is_a: UBERON:0011299 ! white matter of telencephalon relationship: part_of UBERON:2007012 ! lateral forebrain bundle @@ -369582,6 +389929,8 @@ is_obsolete: true id: UBERON:2000801 name: myotome somite 11 def: "Portion of somite 11 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000801 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000725 ! somite 11 @@ -369591,6 +389940,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000802 name: myotome somite 15 def: "Portion of somite 15 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000802 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000852 ! somite 15 @@ -369600,6 +389951,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000803 name: myotome somite 18 def: "Portion of somite 18 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000803 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000853 ! somite 18 @@ -369609,6 +389962,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000804 name: myotome somite 20 def: "Portion of somite 20 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000804 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000156 ! somite 20 @@ -369618,6 +389973,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000805 name: myotome somite 23 def: "Portion of somite 23 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000805 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000730 ! somite 23 @@ -369635,6 +389992,8 @@ is_obsolete: true id: UBERON:2000807 name: myotome somite 26 def: "Portion of somite 26 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000807 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000074 ! somite 26 @@ -369644,6 +390003,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000808 name: myotome somite 29 def: "Portion of somite 29 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000808 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000981 ! somite 29 @@ -369653,6 +390014,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000809 name: myotome somite 4 def: "Portion of somite 4 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000809 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000857 ! somite 4 @@ -369662,6 +390025,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000810 name: myotome somite 7 def: "Portion of somite 7 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000810 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000733 ! somite 7 @@ -369693,6 +390058,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000815 name: nucleus of medial longitudinal fasciculus of medulla subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "nucleus of MLF medulla" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "nucleus of the medial longitudinal fasciculus medulla oblongata" EXACT [ZFA:0000815] xref: EFO:0003577 @@ -369720,6 +390087,8 @@ is_obsolete: true [Term] id: UBERON:2000820 name: presumptive neuron neural tube +subset: human_subset +subset: mouse_subset synonym: "presumptive neurons neural tube" EXACT OMO:0003004 [TAO:0000820] xref: ZFA:0000820 is_a: UBERON:0002050 ! embryonic structure @@ -369737,6 +390106,8 @@ is_obsolete: true [Term] id: UBERON:2000826 name: central nucleus torus semicircularis +subset: human_subset +subset: mouse_subset xref: ZFA:0000826 is_a: UBERON:0011214 ! nucleus of midbrain tectum relationship: part_of UBERON:2000599 ! torus semicircularis @@ -369754,6 +390125,8 @@ is_obsolete: true id: UBERON:2000829 name: sclerotome somite 11 def: "Ventromedial region of somite 11 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000829 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000725 ! somite 11 @@ -369763,6 +390136,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000830 name: sclerotome somite 14 def: "Ventromedial region of somite 14 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000830 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000726 ! somite 14 @@ -369772,6 +390147,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000831 name: sclerotome somite 17 def: "Ventromedial region of somite 17 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000831 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000727 ! somite 17 @@ -369781,6 +390158,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000832 name: sclerotome somite 2 def: "Ventromedial region of somite 2 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000832 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000728 ! somite 2 @@ -369790,6 +390169,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000833 name: sclerotome somite 22 def: "Ventromedial region of somite 22 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000833 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000978 ! somite 22 @@ -369799,6 +390180,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000834 name: sclerotome somite 25 def: "Ventromedial region of somite 25 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000834 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000980 ! somite 25 @@ -369808,6 +390191,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000835 name: sclerotome somite 28 def: "Ventromedial region of somite 28 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000835 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000856 ! somite 28 @@ -369817,6 +390202,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000836 name: sclerotome somite 30 def: "Ventromedial region of somite 30 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000836 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000157 ! somite 30 @@ -369826,6 +390213,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000837 name: sclerotome somite 6 def: "Ventromedial region of somite 6 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000837 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000982 ! somite 6 @@ -369843,6 +390232,8 @@ is_obsolete: true id: UBERON:2000839 name: sclerotome somite 9 def: "Ventromedial region of somite 9 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000839 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000983 ! somite 9 @@ -369940,6 +390331,8 @@ is_obsolete: true id: UBERON:2000851 name: somite 12 def: "Undifferentiated mesodermal component of early trunk segment 12 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000851 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -369949,6 +390342,8 @@ property_value: somite_number "12" xsd:nonNegativeInteger id: UBERON:2000852 name: somite 15 def: "Undifferentiated mesodermal component of early trunk segment 15 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000852 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -369958,6 +390353,8 @@ property_value: somite_number "15" xsd:nonNegativeInteger id: UBERON:2000853 name: somite 18 def: "Undifferentiated mesodermal component of early trunk or tail segment 18 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000853 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -369967,6 +390364,8 @@ property_value: somite_number "18" xsd:nonNegativeInteger id: UBERON:2000854 name: somite 21 def: "Undifferentiated mesodermal component of early tail 21 segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000854 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -369976,6 +390375,8 @@ property_value: somite_number "21" xsd:nonNegativeInteger id: UBERON:2000855 name: somite 24 def: "Undifferentiated mesodermal component of early tail segment 24 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000855 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -369985,6 +390386,8 @@ property_value: somite_number "24" xsd:nonNegativeInteger id: UBERON:2000856 name: somite 28 def: "Undifferentiated mesodermal component of early tail segment 28 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000856 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -369994,6 +390397,8 @@ property_value: somite_number "28" xsd:nonNegativeInteger id: UBERON:2000857 name: somite 4 def: "Undifferentiated mesodermal component of early trunk segment 4 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000857 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -370003,6 +390408,8 @@ property_value: somite_number "4" xsd:nonNegativeInteger id: UBERON:2000858 name: somite 8 def: "Undifferentiated mesodermal component of early trunk segment 8 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000858 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -370041,6 +390448,8 @@ replaced_by: UBERON:4000167 id: UBERON:2000864 name: epaxial region somite 1 def: "The epaxial region of somite 1 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000864 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000924 ! myotome somite 1 @@ -370050,6 +390459,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000865 name: epaxial region somite 12 def: "The epaxial region of somite 12 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000865 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000926 ! myotome somite 12 @@ -370059,6 +390470,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000866 name: epaxial region somite 15 def: "The epaxial region of somite 15 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000866 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000802 ! myotome somite 15 @@ -370068,6 +390481,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000867 name: epaxial region somite 18 def: "The epaxial region of somite 18 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000867 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000803 ! myotome somite 18 @@ -370077,6 +390492,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000868 name: epaxial region somite 20 def: "The epaxial region of somite 20 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000868 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000804 ! myotome somite 20 @@ -370086,6 +390503,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000869 name: epaxial region somite 23 def: "The epaxial region of somite 23 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000869 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000805 ! myotome somite 23 @@ -370095,6 +390514,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000870 name: epaxial region somite 26 def: "The epaxial region of somite 26 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000870 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000807 ! myotome somite 26 @@ -370104,6 +390525,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000872 name: epaxial region somite 29 def: "The epaxial region of somite 29 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000872 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000808 ! myotome somite 29 @@ -370113,6 +390536,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000873 name: epaxial region somite 4 def: "The epaxial region of somite 4 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000873 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000809 ! myotome somite 4 @@ -370122,6 +390547,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000874 name: epaxial region somite 7 def: "The epaxial region of somite 7 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000874 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000810 ! myotome somite 7 @@ -370210,6 +390637,8 @@ is_obsolete: true [Term] id: UBERON:2000887 name: floor plate neural rod +subset: human_subset +subset: mouse_subset synonym: "floorplate neural rod" EXACT [TAO:0000887] xref: ZFA:0000887 is_a: UBERON:0003079 ! floor plate @@ -370220,6 +390649,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000891 name: hypaxial region somite 1 def: "The hypaxial region of somite 1 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000891 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000924 ! myotome somite 1 @@ -370229,6 +390660,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000892 name: hypaxial region somite 12 def: "The hypaxial region of somite 12 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000892 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000926 ! myotome somite 12 @@ -370238,6 +390671,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000894 name: hypaxial region somite 15 def: "The hypaxial region of somite 15 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000894 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000802 ! myotome somite 15 @@ -370247,6 +390682,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000895 name: hypaxial region somite 18 def: "The hypaxial region of somite 18 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000895 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000803 ! myotome somite 18 @@ -370256,6 +390693,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000896 name: hypaxial region somite 20 def: "The hypaxial region of somite 20 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000896 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000804 ! myotome somite 20 @@ -370265,6 +390704,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000897 name: hypaxial region somite 23 def: "The hypaxial region of somite 23 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000897 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000805 ! myotome somite 23 @@ -370274,6 +390715,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000898 name: hypaxial region somite 26 def: "The hypaxial region of somite 26 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000898 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000807 ! myotome somite 26 @@ -370283,6 +390726,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000899 name: hypaxial region somite 29 def: "The hypaxial region of somite 29 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000899 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000808 ! myotome somite 29 @@ -370292,6 +390737,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000900 name: hypaxial region somite 4 def: "The hypaxial region of somite 4 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000900 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000809 ! myotome somite 4 @@ -370301,6 +390748,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000901 name: hypaxial region somite 7 def: "The hypaxial region of somite 7 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000901 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000810 ! myotome somite 7 @@ -370318,6 +390767,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000910 name: medial forebrain bundle telencephalon +subset: human_subset +subset: mouse_subset xref: ZFA:0000910 is_a: UBERON:0003931 ! diencephalic white matter is_a: UBERON:0011299 ! white matter of telencephalon @@ -370328,6 +390779,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000911 name: transverse process of neural arch 3 def: "Endochondral bone that is the anterodorsally oriented process of the third neural arch." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "anterodorsal process of neural arch 3" EXACT [TAO:0000911] synonym: "transverse process of the third vertebra" EXACT [TAO:0000911] is_a: UBERON:4100000 ! skeletal element projection @@ -370428,6 +390881,8 @@ is_obsolete: true id: UBERON:2000924 name: myotome somite 1 def: "Portion of somite 1 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000924 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000072 ! somite 1 @@ -370437,6 +390892,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000925 name: hypaxial region somite 10 def: "The hypaxial region of somite 10 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000925 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001013 ! myotome somite 10 @@ -370446,6 +390903,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000926 name: myotome somite 12 def: "Portion of somite 12 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000926 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000851 ! somite 12 @@ -370455,6 +390914,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000927 name: myotome somite 16 def: "Portion of somite 16 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000927 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000976 ! somite 16 @@ -370464,6 +390925,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000928 name: myotome somite 19 def: "Portion of somite 19 that gives rise to body wall muscle masses. Kimmel et al, 1995.>." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000928 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000977 ! somite 19 @@ -370473,6 +390936,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000929 name: myotome somite 21 def: "Portion of somite 21 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000929 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000854 ! somite 21 @@ -370482,6 +390947,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000930 name: myotome somite 24 def: "Portion of somite 24 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000930 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000855 ! somite 24 @@ -370491,6 +390958,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000931 name: myotome somite 27 def: "Portion of somite 27 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000931 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000731 ! somite 27 @@ -370500,6 +390969,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000932 name: myotome somite 3 def: "Portion of somite 3 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000932 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000732 ! somite 3 @@ -370509,6 +390980,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000933 name: myotome somite 5 def: "Portion of somite 5 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000933 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000073 ! somite 5 @@ -370518,6 +390991,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000934 name: myotome somite 8 def: "Portion of somite 8 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000934 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000858 ! somite 8 @@ -370539,6 +391014,8 @@ relationship: develops_from UBERON:2200936 ! dorsal fin distal radial cartilage id: UBERON:2000937 name: hypaxial region somite 13 def: "The hypaxial region of somite 13 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000937 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2001014 ! myotome somite 13 @@ -370574,6 +391051,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000941 name: nucleus of the medial longitudinal fasciculus synencephalon +subset: human_subset +subset: mouse_subset xref: ZFA:0000941 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000293 ! synencephalon @@ -370590,6 +391069,8 @@ replaced_by: UBERON:0003077 id: UBERON:2000946 name: hypaxial region somite 16 def: "The hypaxial region of somite 16 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000946 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000927 ! myotome somite 16 @@ -370612,6 +391093,8 @@ relationship: develops_from UBERON:2200947 ! dorsal fin proximal radial cartilag id: UBERON:2000952 name: sclerotome somite 1 def: "Ventromedial region of somite 1 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000952 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000072 ! somite 1 @@ -370621,6 +391104,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000953 name: sclerotome somite 12 def: "Ventromedial region of somite 12 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000953 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000851 ! somite 12 @@ -370630,6 +391115,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000954 name: sclerotome somite 15 def: "Ventromedial region of somite 15 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000954 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000852 ! somite 15 @@ -370639,6 +391126,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000955 name: sclerotome somite 18 def: "Ventromedial region of somite 18 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000955 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000853 ! somite 18 @@ -370648,6 +391137,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000956 name: sclerotome somite 20 def: "Ventromedial region of somite 20 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000956 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000156 ! somite 20 @@ -370657,6 +391148,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000957 name: hypaxial region somite 19 def: "The hypaxial region of somite 19 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000957 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000928 ! myotome somite 19 @@ -370666,6 +391159,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000958 name: sclerotome somite 23 def: "Ventromedial region of somite 23 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000958 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000730 ! somite 23 @@ -370675,6 +391170,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000959 name: sclerotome somite 26 def: "Ventromedial region of somite 26 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000959 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000074 ! somite 26 @@ -370684,6 +391181,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000960 name: sclerotome somite 29 def: "Ventromedial region of somite 29 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000960 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000981 ! somite 29 @@ -370693,6 +391192,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000961 name: sclerotome somite 4 def: "Ventromedial region of somite 4 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000961 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000857 ! somite 4 @@ -370702,6 +391203,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000962 name: sclerotome somite 7 def: "Ventromedial region of somite 7 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000962 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000733 ! somite 7 @@ -370751,6 +391254,8 @@ is_obsolete: true id: UBERON:2000968 name: hypaxial region somite 21 def: "The hypaxial region of somite 21 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000968 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000929 ! myotome somite 21 @@ -370800,6 +391305,8 @@ is_obsolete: true id: UBERON:2000974 name: somite 10 def: "Undifferentiated mesodermal component of early trunk segment 10 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000974 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -370809,6 +391316,8 @@ property_value: somite_number "10" xsd:nonNegativeInteger id: UBERON:2000975 name: somite 13 def: "Undifferentiated mesodermal component of early trunk segment 13 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000975 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -370818,6 +391327,8 @@ property_value: somite_number "13" xsd:nonNegativeInteger id: UBERON:2000976 name: somite 16 def: "Undifferentiated mesodermal component of early trunk segment 16 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000976 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -370827,6 +391338,8 @@ property_value: somite_number "16" xsd:nonNegativeInteger id: UBERON:2000977 name: somite 19 def: "Undifferentiated mesodermal component of early trunk or tail segment 19 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000977 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -370836,6 +391349,8 @@ property_value: somite_number "19" xsd:nonNegativeInteger id: UBERON:2000978 name: somite 22 def: "Undifferentiated mesodermal component of early tail segment 22 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000978 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -370845,6 +391360,8 @@ property_value: somite_number "22" xsd:nonNegativeInteger id: UBERON:2000979 name: hypaxial region somite 24 def: "The hypaxial region of somite 24 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000979 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000930 ! myotome somite 24 @@ -370854,6 +391371,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000980 name: somite 25 def: "Undifferentiated mesodermal component of early tail segment 25 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000980 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -370863,6 +391382,8 @@ property_value: somite_number "25" xsd:nonNegativeInteger id: UBERON:2000981 name: somite 29 def: "Undifferentiated mesodermal component of early tail segment 29 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000981 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -370872,6 +391393,8 @@ property_value: somite_number "29" xsd:nonNegativeInteger id: UBERON:2000982 name: somite 6 def: "Undifferentiated mesodermal component of early trunk segment 6 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000982 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -370881,6 +391404,8 @@ property_value: somite_number "6" xsd:nonNegativeInteger id: UBERON:2000983 name: somite 9 def: "Undifferentiated mesodermal component of early trunk segment 9 or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000983 is_a: UBERON:0002329 ! somite property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -370889,6 +391414,8 @@ property_value: somite_number "9" xsd:nonNegativeInteger [Term] id: UBERON:2000984 name: superior reticular formation tegmentum +subset: human_subset +subset: mouse_subset xref: ZFA:0000984 is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0007414 ! nucleus of midbrain tegmentum @@ -370899,6 +391426,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000985 name: ventral rhombencephalic commissure medulla oblongata +subset: human_subset +subset: mouse_subset xref: ZFA:0000985 is_a: UBERON:0014649 ! white matter of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata @@ -370908,6 +391437,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000986 name: hypaxial region somite 27 def: "The hypaxial region of somite 27 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000986 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000931 ! myotome somite 27 @@ -370917,6 +391448,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000987 name: hypaxial region somite 3 def: "The hypaxial region of somite 3 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000987 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000932 ! myotome somite 3 @@ -370926,6 +391459,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000988 name: hypaxial region somite 5 def: "The hypaxial region of somite 5 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000988 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000933 ! myotome somite 5 @@ -370935,6 +391470,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000989 name: hypaxial region somite 8 def: "The hypaxial region of somite 8 derived body wall muscle. The hypaxial region is ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000989 is_a: UBERON:0003895 ! hypaxial myotome region relationship: part_of UBERON:2000934 ! myotome somite 8 @@ -370944,6 +391481,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000991 name: epaxial region somite 10 def: "The epaxial region of somite 10 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0000991 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001013 ! myotome somite 10 @@ -370952,6 +391491,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000993 name: lateral wall neural rod +subset: human_subset +subset: mouse_subset xref: ZFA:0000993 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -370961,6 +391502,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000997 name: medial funicular nucleus trigeminal nuclei +subset: human_subset +subset: mouse_subset xref: ZFA:0000997 is_a: UBERON:0004132 ! trigeminal sensory nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -370969,6 +391512,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001001 name: epaxial region somite 13 def: "The epaxial region of somite 13 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001001 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2001014 ! myotome somite 13 @@ -371057,6 +391602,8 @@ is_obsolete: true id: UBERON:2001012 name: epaxial region somite 16 def: "The epaxial region of somite 16 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001012 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000927 ! myotome somite 16 @@ -371066,6 +391613,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001013 name: myotome somite 10 def: "Portion of somite 10 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001013 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000974 ! somite 10 @@ -371075,6 +391624,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001014 name: myotome somite 13 def: "Portion of somite 13 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001014 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000975 ! somite 13 @@ -371084,6 +391635,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001015 name: myotome somite 17 def: "Portion of somite 17 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001015 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000727 ! somite 17 @@ -371093,6 +391646,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001016 name: myotome somite 2 def: "Portion of somite 2 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001016 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000728 ! somite 2 @@ -371102,6 +391657,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001017 name: myotome somite 22 def: "Portion of somite 22 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001017 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000978 ! somite 22 @@ -371111,6 +391668,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001018 name: myotome somite 25 def: "Portion of somite 25 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001018 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000980 ! somite 25 @@ -371120,6 +391679,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001019 name: myotome somite 28 def: "Portion of somite 28 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001019 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000856 ! somite 28 @@ -371129,6 +391690,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001020 name: myotome somite 30 def: "Portion of somite 30 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001020 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000157 ! somite 30 @@ -371138,6 +391701,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001021 name: myotome somite 6 def: "Portion of somite 6 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001021 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000982 ! somite 6 @@ -371147,6 +391712,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001022 name: myotome somite 9 def: "Portion of somite 9 that gives rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001022 is_a: UBERON:0003082 ! myotome relationship: part_of UBERON:2000983 ! somite 9 @@ -371156,6 +391723,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001023 name: epaxial region somite 19 def: "The epaxial region of somite 19 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001023 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000928 ! myotome somite 19 @@ -371208,6 +391777,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001030 name: epaxial region somite 21 def: "The epaxial region of somite 21 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001030 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000929 ! myotome somite 21 @@ -371217,6 +391788,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001036 name: sclerotome somite 10 def: "Ventromedial region of somite 10 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001036 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000974 ! somite 10 @@ -371226,6 +391799,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001037 name: sclerotome somite 13 def: "Ventromedial region of somite 13 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001037 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000975 ! somite 13 @@ -371235,6 +391810,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001038 name: sclerotome somite 16 def: "Ventromedial region of somite 16 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001038 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000976 ! somite 16 @@ -371244,6 +391821,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001039 name: sclerotome somite 19 def: "Ventromedial region of somite 19 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001039 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000977 ! somite 19 @@ -371253,6 +391832,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001040 name: epaxial region somite 24 def: "The epaxial region of somite 24 derived body wall muscle. The epaxial region is dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001040 is_a: UBERON:0003900 ! epaxial myotome region relationship: part_of UBERON:2000930 ! myotome somite 24 @@ -371262,6 +391843,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001041 name: sclerotome somite 21 def: "Ventromedial region of somite 21 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001041 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000854 ! somite 21 @@ -371271,6 +391854,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001042 name: sclerotome somite 24 def: "Ventromedial region of somite 24 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001042 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000855 ! somite 24 @@ -371280,6 +391865,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001043 name: sclerotome somite 27 def: "Ventromedial region of somite 27 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001043 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000731 ! somite 27 @@ -371289,6 +391876,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001044 name: sclerotome somite 3 def: "Ventromedial region of somite 3 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001044 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000732 ! somite 3 @@ -371298,6 +391887,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001045 name: sclerotome somite 5 def: "Ventromedial region of somite 5 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001045 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000073 ! somite 5 @@ -371307,6 +391898,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001046 name: sclerotome somite 8 def: "Ventromedial region of somite 8 that will form vertebral cartilages and connective tissues. The sclerotome lies ventral to the myotome. Cells of the sclerotome will migrate dorsally to surround the notochord and neural tube. Kimmel et al, 1995." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001046 is_a: UBERON:0003089 ! sclerotome relationship: part_of UBERON:2000858 ! somite 8 @@ -371347,6 +391940,8 @@ is_obsolete: true [Term] id: UBERON:2001051 name: caudal division of the internal carotid artery +subset: human_subset +subset: mouse_subset synonym: "CaDI" EXACT [TAO:0001051] xref: ZFA:0001051 is_a: UBERON:0003496 ! head blood vessel @@ -371358,6 +391953,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001052 name: primordial hindbrain channel def: "The paired vessels that run along the lateral walls of the hindbrain and drain into the anterior cardinal veins. Isogai et al. (2002)." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "medial head vein" EXACT [TAO:0001052] synonym: "PHCB" EXACT [TAO:0001052] xref: ZFA:0001052 @@ -371369,6 +391966,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001053 name: future internal carotid artery +subset: human_subset +subset: mouse_subset synonym: "PICA" EXACT [TAO:0001053] synonym: "primitive internal carotid artery" EXACT [ZFA:0001053] xref: EFO:0003612 @@ -371383,6 +391982,8 @@ relationship: part_of UBERON:0001530 {source="EHDAA2"} ! common carotid artery p id: UBERON:2001054 name: lateral dorsal aorta def: "Connect the outflow of the aortic arches to the dorsal aorta. The place where the lateral dorsal aorta fuse is is called the radiax of the aorta. Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "LDA" EXACT [TAO:0001054] xref: ZFA:0001054 is_a: UBERON:0001637 ! artery @@ -371391,6 +391992,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001055 name: pronephric duct opening +subset: human_subset +subset: mouse_subset xref: ZFA:0001055 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0003060 ! pronephric duct @@ -371412,6 +392015,8 @@ replaced_by: UBERON:4000164 [Term] id: UBERON:2001059 name: cranial division of the internal carotid artery +subset: human_subset +subset: mouse_subset synonym: "CrDI" EXACT [TAO:0001059] synonym: "rostral division of the internal carotid artery" EXACT [TAO:0001059] xref: ZFA:0001059 @@ -371424,6 +392029,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001060 name: basidorsal def: "Basidorsals are bilaterally paired cartilages on the dorsolateral side of the notochord which are replaced by ossified neural arches or dorsal arcocentra. In otophysan fishes, basidorsal 1, bd2, bd3, and bd4 give rise to parts of the Weberian apparatus." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "arcualia" EXACT [TAO:0001060] xref: ZFA:0001060 is_a: UBERON:2001457 ! postcranial axial cartilage @@ -371434,6 +392041,8 @@ id: UBERON:2001062 name: presumptive mesencephalic artery def: "Precursor to mesencephalic artery." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "PMsA" EXACT [TAO:0001062] synonym: "primitive mesencephalic artery" EXACT [ZFA:0001062] xref: EFO:0003615 @@ -371448,6 +392057,7 @@ property_value: external_definition "Branches dorsally from the cranial division [Term] id: UBERON:2001063 name: posterior caudal vein +subset: mouse_subset xref: ZFA:0001063 is_a: UBERON:0003481 ! tail vein relationship: part_of UBERON:0010204 ! tail vasculature @@ -371478,6 +392088,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001073 name: axial vasculature +subset: human_subset +subset: mouse_subset xref: ZFA:0001073 is_a: UBERON:0002049 ! vasculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -371486,6 +392098,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001076 name: intestinal bulb def: "This anteriormost portion of the intestine has the most digestive enzymes and the greatest epithelial surface area. Wallace et al, 2005." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "anterior intestine" EXACT [TAO:0001076] xref: ZFA:0001076 is_a: UBERON:0000481 ! multi-tissue structure @@ -371506,6 +392120,8 @@ is_obsolete: true [Term] id: UBERON:2001089 name: myoseptum +subset: human_subset +subset: mouse_subset xref: ZFA:0001089 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0003082 ! myotome @@ -371522,6 +392138,8 @@ is_obsolete: true id: UBERON:2001095 name: immature macula def: "An otic sensory epithelium that will develop into the mature macula." [ZFA:0001095] +subset: human_subset +subset: mouse_subset synonym: "immature maculae" EXACT OMO:0003004 [TAO:0001095] synonym: "immature sensory patch" EXACT [TAO:0001095] synonym: "immature sensory patches" EXACT [TAO:0001095] @@ -371533,6 +392151,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001096 name: immature anterior macula +subset: human_subset +subset: mouse_subset xref: ZFA:0001096 is_a: UBERON:2001095 ! immature macula property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -371540,6 +392160,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001097 name: immature posterior macula +subset: human_subset +subset: mouse_subset xref: ZFA:0001097 is_a: UBERON:2001095 ! immature macula property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -371563,12 +392185,16 @@ is_obsolete: true [Term] id: UBERON:2001102 name: immature anterior otolith +subset: human_subset +subset: mouse_subset is_a: UBERON:2000139 ! immature otolith property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2001103 name: immature posterior otolith +subset: human_subset +subset: mouse_subset is_a: UBERON:2000139 ! immature otolith property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -371585,6 +392211,8 @@ consider: CL:0000023 id: UBERON:2001118 name: urogenital papilla def: "A protuberance in front of the gential pore and behind the vent. Mature females have a well developed urogenital papillae whilst in mature males it is poorly developed. Brion et al, 2004." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "anal papilla" EXACT [TAO:0001118] synonym: "anal papillae" EXACT [TAO:0001118] synonym: "genital papilla" EXACT [TAO:0001118] @@ -371617,6 +392245,8 @@ replaced_by: UBERON:4000168 id: UBERON:2001125 name: organizer inducing center def: "The dorsal marginal region of the YSL where maternal dorsal determinants localize. Participates in positioning the shield. Ho et al, 1999." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "Nieuwkoop center" EXACT [TAO:0001125] xref: ZFA:0001125 is_a: UBERON:0005291 ! embryonic tissue @@ -371627,6 +392257,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001126 name: noninvoluting endocytic marginal cell cluster def: "The NEM cell cluster lies in a superficial position of the dorsal blastoderm margin encompassing EVL cells and one or two layers of underlying deep cells. Unlike other marginal blastomeres, cells in this cluster do not participate in involution. Cooper et al, 1996." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "NEM" EXACT [TAO:0001126] synonym: "noninvoluting endocytic marginal cells" EXACT OMO:0003004 [TAO:0001126] xref: ZFA:0001126 @@ -371637,6 +392269,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001129 name: pharyngeal pouches 2-6 +subset: human_subset +subset: mouse_subset xref: ZFA:0001129 is_a: UBERON:0004117 ! pharyngeal pouch property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -371645,6 +392279,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001137 name: ventral tooth row def: "Tooth row that is the ventralmost row of teeth on ceratobranchial 5 bone." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001137 is_a: UBERON:0009678 ! tooth row relationship: composed_primarily_of UBERON:2000694 ! ceratobranchial 5 tooth @@ -371654,6 +392290,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001139 name: mediodorsal tooth row def: "Tooth row that is the mediodorsal row of teeth on ceratobranchial 5 bone, located between the dorsal tooth row and ventral tooth row." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001139 is_a: UBERON:0009678 ! tooth row relationship: composed_primarily_of UBERON:2000694 ! ceratobranchial 5 tooth @@ -371663,6 +392301,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001140 name: dorsal tooth row def: "Tooth row that is the dorsalmost row of teeth on ceratobranchial 5 bone." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001140 is_a: UBERON:0009678 ! tooth row relationship: composed_primarily_of UBERON:2000694 ! ceratobranchial 5 tooth @@ -371672,6 +392312,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001141 name: tooth 1V def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the ventral tooth row." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001141 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001137 ! ventral tooth row @@ -371682,6 +392324,8 @@ property_value: tooth_number "1" xsd:int id: UBERON:2001142 name: tooth 5V def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the ventral tooth row." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001142 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001137 ! ventral tooth row @@ -371692,6 +392336,8 @@ property_value: tooth_number "5" xsd:int id: UBERON:2001143 name: tooth 4V def: "Ceratobranchial 5 tooth which is posterior to tooth 3V and anterior to tooth 5V in the ventral tooth row." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001143 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001137 ! ventral tooth row @@ -371702,6 +392348,8 @@ property_value: tooth_number "4" xsd:int id: UBERON:2001144 name: tooth 2V def: "Ceratobranchial 5 tooth which is posterior to tooth 1V and anterior to tooth 3V in the ventral tooth row." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001144 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001137 ! ventral tooth row @@ -371712,6 +392360,8 @@ property_value: tooth_number "2" xsd:int id: UBERON:2001145 name: tooth 3V def: "Ceratobranchial 5 tooth which is posterior to tooth 2V and anterior to tooth 4V in the ventral tooth row." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001145 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001137 ! ventral tooth row @@ -371722,6 +392372,8 @@ property_value: tooth_number "3" xsd:int id: UBERON:2001146 name: tooth 1MD def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the mediodorsal tooth row." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001146 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001139 ! mediodorsal tooth row @@ -371732,6 +392384,8 @@ property_value: tooth_number "1" xsd:int id: UBERON:2001147 name: tooth 2MD def: "Ceratobranchial 5 tooth which is posterior to tooth 1MD and anterior to tooth 3MD in the mediodorsal tooth row." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001147 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001139 ! mediodorsal tooth row @@ -371742,6 +392396,8 @@ property_value: tooth_number "2" xsd:int id: UBERON:2001148 name: tooth 1D def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the dorsal tooth row." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001148 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001140 ! dorsal tooth row @@ -371752,6 +392408,8 @@ property_value: tooth_number "1" xsd:int id: UBERON:2001150 name: tooth 2D def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the dorsal tooth row." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001150 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001140 ! dorsal tooth row @@ -371762,6 +392420,8 @@ property_value: tooth_number "2" xsd:int id: UBERON:2001151 name: tooth 4MD def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the mediodorsal tooth row." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001151 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001139 ! mediodorsal tooth row @@ -371772,6 +392432,8 @@ property_value: tooth_number "4" xsd:int id: UBERON:2001152 name: tooth 3MD def: "Ceratobranchial 5 tooth which is posterior to tooth 2MD and anterior to tooth 4MD in the mediodorsal tooth row." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001152 is_a: UBERON:2000694 ! ceratobranchial 5 tooth relationship: part_of UBERON:2001139 ! mediodorsal tooth row @@ -371830,6 +392492,8 @@ replaced_by: UBERON:4000163 [Term] id: UBERON:2001163 name: supraneural 7 bone +subset: human_subset +subset: mouse_subset xref: ZFA:0001163 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000442 ! supraneural bone @@ -371843,6 +392507,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001164 name: supraneural 6 bone +subset: human_subset +subset: mouse_subset synonym: "sn6" EXACT [TAO:0001164] xref: ZFA:0001164 is_a: UBERON:0002513 ! endochondral bone @@ -371857,6 +392523,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001165 name: supraneural 5 bone +subset: human_subset +subset: mouse_subset synonym: "sn5" EXACT [TAO:0001165] xref: ZFA:0001165 is_a: UBERON:0002513 ! endochondral bone @@ -371871,6 +392539,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001166 name: supraneural 9 bone +subset: human_subset +subset: mouse_subset xref: ZFA:0001166 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000442 ! supraneural bone @@ -371884,6 +392554,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001167 name: vertebral element 1 +subset: human_subset +subset: mouse_subset is_a: UBERON:0010913 ! vertebral element property_value: vertebra_number "1" xsd:nonNegativeInteger @@ -371891,6 +392563,8 @@ property_value: vertebra_number "1" xsd:nonNegativeInteger id: UBERON:2001168 name: vertebral element 2 def: "Vertebra that is posteriorly adjacent to vertebra 1." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010913 ! vertebral element property_value: vertebra_number "2" xsd:nonNegativeInteger @@ -371898,6 +392572,8 @@ property_value: vertebra_number "2" xsd:nonNegativeInteger id: UBERON:2001169 name: vertebral element 3 def: "Vertebra that is posteriorly adjacent to vertebra 2." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001169 is_a: UBERON:0010913 ! vertebral element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -371907,6 +392583,8 @@ property_value: vertebra_number "3" xsd:nonNegativeInteger id: UBERON:2001170 name: vertebral element 4 def: "Vertebra that is anteriorly adjacent to vertebra 5." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001170 is_a: UBERON:0010913 ! vertebral element relationship: overlaps UBERON:2001940 ! vertebra 4-vertebra 5 joint @@ -371930,6 +392608,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001172 name: roofing cartilage def: "Cartilaginous larval structure dorsal to the four anterior-most vertebrae, which forms the connection between neural arches and supraneurals in the Weberian apparatus. Bird and Mabee, 2003." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001172 is_a: UBERON:2001457 ! postcranial axial cartilage relationship: part_of UBERON:2001191 ! supraneural 2 bone @@ -371939,6 +392619,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001179 name: epidermal superficial stratum +subset: human_subset +subset: mouse_subset xref: ZFA:0001179 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -371949,6 +392631,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001181 name: epidermal intermediate stratum +subset: human_subset +subset: mouse_subset xref: ZFA:0001181 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -371958,6 +392642,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001183 name: dermal superficial region +subset: human_subset +subset: mouse_subset synonym: "stratum laxum" EXACT [TAO:0001183] xref: ZFA:0001183 is_a: UBERON:0000481 ! multi-tissue structure @@ -371970,6 +392656,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001186 name: collagenous dermal stroma def: "A layer of collagen fibrils present in the imature integument in an acellular subepidermal space. At first, the fibrils are all oriented in the same direction, later they form the complex plywood-like structure that is characteristic of the dermal deep region. Le Guellec et al, 2004." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "primary dermal stroma" EXACT [TAO:0001186] xref: ZFA:0001186 is_a: UBERON:0000476 ! acellular anatomical structure @@ -372004,6 +392692,8 @@ id: UBERON:2001191 name: supraneural 2 bone def: "Supraneural bone located dorsal to vertebra 2." [ZFIN:curator] comment: In otophysans, supraneural 2 bone is part of the neural complex. +subset: human_subset +subset: mouse_subset synonym: "small supraneural" EXACT [TAO:doi\:10.1046/j.1096-3642.2002.00014.x] synonym: "sn2" EXACT [TAO:0001191] xref: ZFA:0001191 @@ -372021,6 +392711,8 @@ id: UBERON:2001192 name: supraneural 3 bone def: "Supraneural bone that is located dorsal to vertebrae 3 and 4." [ZFIN:curator] comment: In otophysans, supraneural 3 bone is part of the neural complex and fuses in development with neural arches 3 and 4. +subset: human_subset +subset: mouse_subset synonym: "large supraneural" EXACT [TAO:doi\:10.1046/j.1096-3642.2002.00014.x] synonym: "sn3" EXACT [TAO:0001192] xref: ZFA:0001192 @@ -372036,6 +392728,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001193 name: supraneural 8 bone +subset: human_subset +subset: mouse_subset xref: ZFA:0001193 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000442 ! supraneural bone @@ -372063,6 +392757,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001201 name: ventral lateral mesoderm +subset: human_subset +subset: mouse_subset xref: ZFA:0001201 is_a: UBERON:2000083 ! ventral mesoderm property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -372079,6 +392775,8 @@ replaced_by: UBERON:0001775 id: UBERON:2001220 name: basibranchial copula def: "Pharyngeal arch cartilage that is ventral, median, and associated with more than one pharyngeal arch in the pharyngeal arch 3-7 skeleton." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "copula" RELATED [TAO:0001220] synonym: "copulae" RELATED OMO:0003004 [TAO:0001220] xref: ZFA:0001220 @@ -372090,6 +392788,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001221 name: anterior copula def: "Copula that is ventral, median, and associated with pharyngeal arches 3-5." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "anterior basibranchial copula" EXACT [TAO:0001221] synonym: "copula 1" BROAD [TAO:0001221] synonym: "copula 2" BROAD [TAO:0001221] @@ -372101,6 +392801,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001222 name: posterior copula def: "Copula that is ventral, median, and associated with branchial arches 4 and 5 (pharyngeal arches 6-7)." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "copula 2" EXACT [TAO:0001222] synonym: "copula 3" RELATED [TAO:0001222] synonym: "posterior basibranchial copula" EXACT [TAO:0001222] @@ -372113,6 +392815,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001223 name: basibranchial 1 bone def: "Basibranchial bone that is ventral, median, and associated with branchial arch 1 (pharyngeal arch 3). Typically develops in the anterior copula cartilage." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001223 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone @@ -372127,6 +392831,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001224 name: basibranchial 2 bone def: "Basibranchial bone that is ventral, median, and associated with branchial arch 2 (pharyngeal arch 4). Typically develops in the anterior copula cartilage." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001224 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone @@ -372141,6 +392847,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001225 name: basibranchial 3 bone def: "Basibranchial bone that is ventral, median, and associated with branchial arch 3 (pharyngeal arch 5). Typically develops in the anterior copula cartilage." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001225 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone @@ -372155,6 +392863,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001226 name: basibranchial 4 bone def: "Basibranchial bone that is ventral, median, and associated with branchial arch 4 (pharyngeal arch 6). Develops in posterior copula cartilage or basibranchial 4 cartilage." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001226 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone @@ -372168,6 +392878,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001228 name: pharyngeal arch 3 skeleton +subset: human_subset +subset: mouse_subset synonym: "branchial arch 1 skeleton" EXACT [TAO:0001228] synonym: "gill arch 1 skeleton" EXACT [TAO:0001228] synonym: "visceral arch 3 skeleton" EXACT [TAO:0001228] @@ -372180,6 +392892,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001229 name: pharyngeal arch 7 skeleton +subset: human_subset +subset: mouse_subset synonym: "branchial arch 5 skeleton" EXACT [TAO:0001229] synonym: "gill arch 5 skeleton" EXACT [TAO:0001229] synonym: "visceral arch 7 skeleton" EXACT [TAO:0001229] @@ -372192,6 +392906,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001230 name: pharyngeal arch 6 skeleton +subset: human_subset +subset: mouse_subset synonym: "branchial arch 4 skeleton" EXACT [TAO:0001230] synonym: "gill arch 4 skeleton" EXACT [TAO:0001230] synonym: "visceral arch 6 skeleton" EXACT [TAO:0001230] @@ -372204,6 +392920,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001231 name: pharyngeal arch 4 skeleton +subset: human_subset +subset: mouse_subset synonym: "branchial arch 2 skeleton" EXACT [TAO:0001231] synonym: "gill arch 2 skeleton" EXACT [TAO:0001231] synonym: "visceral arch 4 skeleton" EXACT [TAO:0001231] @@ -372216,6 +392934,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001232 name: pharyngeal arch 5 skeleton +subset: human_subset +subset: mouse_subset synonym: "branchial arch 3 skeleton" EXACT [TAO:0001232] synonym: "gill arch 3 skeleton" EXACT [TAO:0001232] synonym: "visceral arch 5 skeleton" EXACT [TAO:0001232] @@ -372229,6 +392949,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001233 name: hypobranchial 1 bone def: "Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 1 element laterally. Develops in hypobranchial 1 cartilage." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001233 is_a: UBERON:2000363 ! hypobranchial bone is_a: UBERON:2001894 ! hypobranchial 1 element @@ -372239,6 +392961,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001234 name: hypobranchial 4 bone def: "Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 4 element laterally. Develops in hypobranchial 4 cartilage." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001234 is_a: UBERON:2000363 ! hypobranchial bone is_a: UBERON:2001897 ! hypobranchial 4 element @@ -372249,6 +392973,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001235 name: hypobranchial 3 bone def: "Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 3 element laterally. Develops in hypobranchial 3 cartilage." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001235 is_a: UBERON:2000363 ! hypobranchial bone is_a: UBERON:2001896 ! hypobranchial 3 element @@ -372260,6 +392986,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001236 name: hypobranchial 2 bone def: "Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 2 element laterally. Develops in hypobranchial 2 cartilage." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001236 is_a: UBERON:2000363 ! hypobranchial bone is_a: UBERON:2001895 ! hypobranchial 2 element @@ -372270,6 +392998,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001237 name: ceratobranchial 1 bone def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001237 is_a: UBERON:2000488 ! ceratobranchial bone is_a: UBERON:2001899 ! ceratobranchial 1 element @@ -372281,6 +393011,8 @@ id: UBERON:2001239 name: ceratobranchial 5 bone def: "Ceratobranchial bone that is the most posterior, bilaterally paired ventral pharyngeal arch bone." [ZFIN:curator] comment: Synonym 'lower pharyngeal' from Weitzman, 1962.\nSynonym 'inferior pharyngeal bone' from Saxena, S.C. (1960). The cranial musculature of a hill-stream cyprinid fish Garra mullya (Sykes). Proceedings of the National Institute of Science in India. 26B(4): 176-188.\nSynonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bone musculature of the carp, Cyprinus carpio. Journal of Morphology. 134(2): 131-140. +subset: human_subset +subset: mouse_subset synonym: "inferior pharyngeal bone" EXACT [TAO:0001239] synonym: "lower pharyngeal" EXACT [TAO:0001239] xref: ZFA:0001239 @@ -372293,6 +393025,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001240 name: ceratobranchial 4 bone def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001240 is_a: UBERON:2000488 ! ceratobranchial bone is_a: UBERON:2001902 ! ceratobranchial 4 element @@ -372303,6 +393037,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001241 name: ceratobranchial 3 bone def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001241 is_a: UBERON:2000488 ! ceratobranchial bone is_a: UBERON:2001901 ! ceratobranchial 3 element @@ -372313,6 +393049,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001242 name: ceratobranchial 2 bone def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001242 is_a: UBERON:2000488 ! ceratobranchial bone is_a: UBERON:2001900 ! ceratobranchial 2 element @@ -372323,6 +393061,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001243 name: epibranchial 1 bone def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone and medially with pharyngobranchial cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001243 is_a: UBERON:2000658 ! epibranchial bone is_a: UBERON:2001905 ! epibranchial 1 element @@ -372333,6 +393073,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001244 name: epibranchial 5 cartilage def: "Epibranchial cartilage that is bilaterally paired and located at the articulation of epibranchial 4 cartilage or bone and the posterior tip of ceratobranchial 4 cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "accessory cartilage" EXACT [TAO:0001244] synonym: "interbranchial" EXACT [TAO:0001244] synonym: "interbranchial IV" EXACT [TAO:0001244] @@ -372345,6 +393087,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001245 name: epibranchial 4 bone def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone and medially with pharyngobranchial cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001245 is_a: UBERON:2000658 ! epibranchial bone is_a: UBERON:2001908 ! epibranchial 4 element @@ -372356,6 +393100,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001246 name: epibranchial 2 bone def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone and medially with pharyngobranchial cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001246 is_a: UBERON:2000658 ! epibranchial bone is_a: UBERON:2001906 ! epibranchial 2 element @@ -372366,6 +393112,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001247 name: epibranchial 3 bone def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone and medially with pharyngobranchial cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001247 is_a: UBERON:2000658 ! epibranchial bone is_a: UBERON:2001907 ! epibranchial 3 element @@ -372387,6 +393135,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001250 name: pharyngobranchial 2 bone def: "Pharyngobranchial bone, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 1 element." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "infrapharyngobranchial 2" EXACT [TAO:0001250] xref: ZFA:0001250 is_a: UBERON:2000527 ! pharyngobranchial bone @@ -372398,6 +393148,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001251 name: pharyngobranchial 4 cartilage def: "Most posterior pharyngobranchial cartilage, located medial to the epibranchials." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "infrapharyngobranchial 4 cartilage" EXACT [TAO:0001251] synonym: "infrapharyngobranchials" EXACT OMO:0003004 [TAO:0001251] xref: ZFA:0001251 @@ -372410,6 +393162,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001252 name: pharyngobranchial 3 bone def: "Pharyngobranchial bone, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 2 element." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "infrapharyngobranchial 3" EXACT [TAO:0001252] xref: ZFA:0001252 is_a: UBERON:2000527 ! pharyngobranchial bone @@ -372422,6 +393176,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001253 name: neural arch 2 def: "Neural arch that is the second after the neurocranium." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003861 ! neural arch property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -372438,6 +393194,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001256 name: lateral floor plate +subset: human_subset +subset: mouse_subset xref: ZFA:0001256 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure @@ -372449,6 +393207,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001257 name: medial floor plate def: "The medial portion of the spinal cord floor plate, located adjacent to the notochord." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001257 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure @@ -372470,6 +393230,8 @@ replaced_by: UBERON:0006284 id: UBERON:2001263 name: ovarian follicle stage I def: "Stage I follicles (less than 140 microns) are primary growth stage. Selman et al, 1993." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "previtillogenic ovarian follicle" EXACT [TAO:0001263] xref: ZFA:0001263 is_a: UBERON:0001305 ! ovarian follicle @@ -372479,6 +393241,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001265 name: ovarian follicle stage II def: "Stage II follicles (140-340 microns) are cortical alveolus stage. Selman et al, 1993." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001265 is_a: UBERON:0001305 ! ovarian follicle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -372487,6 +393251,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001266 name: ovarian follicle stage III def: "Stage III (340-690 microns) are vitellogenesis. Selman et al, 1993." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001266 is_a: UBERON:0001305 ! ovarian follicle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -372496,6 +393262,8 @@ id: UBERON:2001269 name: regenerating fin/limb def: "Fin or limb undergoing the process of regeneration." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "regenerating fins" NARROW OMO:0003004 [ZFA:0001269] xref: EFO:0003657 xref: TAO:0001269 @@ -372510,6 +393278,8 @@ relationship: participates_in GO:0031099 ! regeneration id: UBERON:2001274 name: coronomeckelian def: "Tendon bone located on the median side of the lower jaw, dorsal to Meckel's cartilage and medial to the angular. The coronomeckelian forms as an ossification of the tendon of the adductor mandibulae muscle. The coronomeckelian is a paired bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "sesamoid articular" EXACT [TAO:0001274] synonym: "sesamoid coronoid" EXACT [TAO:0001274] xref: ZFA:0001274 @@ -372524,6 +393294,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001275 name: sublingual bone def: "Endochondral bone that is the median element of the ventral hyoid arch, generally lying between the paired ventral hypohyals." [TAO:je] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -372551,6 +393323,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001279 name: branchiostegal ray 1 def: "Branchiostegal ray that is the anterior-most ray in the adult." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001279 is_a: UBERON:2000476 ! branchiostegal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -372559,6 +393333,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001280 name: branchiostegal ray 3 def: "Branchiostegal ray that is the third anterior-most ray in the adult." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001280 is_a: UBERON:2000476 ! branchiostegal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -372567,6 +393343,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001281 name: branchiostegal ray 2 def: "Branchiostegal ray that is the second anterior-most ray in the adult." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001281 is_a: UBERON:2000476 ! branchiostegal ray property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -372584,6 +393362,7 @@ is_obsolete: true [Term] id: UBERON:2001286 name: caudal vein plexus +subset: mouse_subset xref: ZFA:0001286 is_a: UBERON:0010204 ! tail vasculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -372591,6 +393370,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001293 name: posterior kidney +subset: human_subset +subset: mouse_subset xref: ZFA:0001293 is_a: UBERON:0003103 ! compound organ is_a: UBERON:0004120 ! mesoderm-derived structure @@ -372602,6 +393383,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001297 name: vagal placode 1 +subset: human_subset +subset: mouse_subset xref: ZFA:0001297 is_a: UBERON:0003078 ! epibranchial placode property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -372609,6 +393392,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001298 name: vagal placode 2 +subset: human_subset +subset: mouse_subset xref: ZFA:0001298 is_a: UBERON:0003078 ! epibranchial placode property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -372616,6 +393401,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001299 name: vagal placode 3 +subset: human_subset +subset: mouse_subset xref: ZFA:0001299 is_a: UBERON:0003078 ! epibranchial placode property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -372623,6 +393410,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001300 name: vagal placode 4 +subset: human_subset +subset: mouse_subset xref: ZFA:0001300 is_a: UBERON:0003078 ! epibranchial placode property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -372630,6 +393419,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001302 name: vagal ganglion 1 +subset: human_subset +subset: mouse_subset synonym: "gX1" EXACT [TAO:0001302] synonym: "nodose ganglion 1" EXACT [TAO:0001302] xref: ZFA:0001302 @@ -372640,6 +393431,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001303 name: vagal ganglion 2 +subset: human_subset +subset: mouse_subset synonym: "gX2" EXACT [TAO:0001303] synonym: "nodose ganglion 2" EXACT [TAO:0001303] xref: ZFA:0001303 @@ -372650,6 +393443,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001304 name: vagal ganglion 3 +subset: human_subset +subset: mouse_subset synonym: "gX3" EXACT [TAO:0001304] synonym: "nodose ganglion 3" EXACT [TAO:0001304] xref: ZFA:0001304 @@ -372660,6 +393455,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001305 name: vagal ganglion 4 +subset: human_subset +subset: mouse_subset synonym: "gX4" EXACT [TAO:0001305] synonym: "nodose ganglion 4" EXACT [TAO:0001305] xref: ZFA:0001305 @@ -372726,6 +393523,8 @@ is_obsolete: true [Term] id: UBERON:2001324 name: enteric musculature +subset: human_subset +subset: mouse_subset xref: ZFA:0001324 is_a: UBERON:0000383 ! musculature of body relationship: part_of UBERON:0001555 ! digestive tract @@ -372735,6 +393534,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001333 name: sublingual dorsal and ventral fused def: "Sublingual that is the single element resulting from the fusion of the sublingual dorsal ossification and sublingual ventral ossification." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001275 ! sublingual bone relationship: develops_from UBERON:2001475 ! sublingual dorsal ossification relationship: develops_from UBERON:2001476 ! sublingual ventral ossification @@ -372744,6 +393545,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001335 name: supradorsal def: "Supradorsals are small paired nodules of cartilage positioned at the distal ends of neural arches and the proximal end of neural spines (Arratia et al., 2001)." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001335 is_a: UBERON:2001457 ! postcranial axial cartilage relationship: part_of UBERON:0003861 ! neural arch @@ -372769,6 +393572,8 @@ is_obsolete: true id: UBERON:2001340 name: nucleus of the tract of the postoptic commissure def: "The nucleus containing the cell bodies of neurons whose axons form the postoptic commissure." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "ntPOC" EXACT [TAO:0001340] xref: ZFA:0001340 is_a: UBERON:0006569 ! diencephalic nucleus @@ -372779,6 +393584,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001341 name: intervening zone def: "A zone of delayed differentiation at the midbrainhindbrain boundary. The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates. Geling et al, 2003." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "IZ" EXACT [TAO:0001341] xref: ZFA:0001341 is_a: UBERON:0000477 ! anatomical cluster @@ -372789,6 +393596,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001342 name: presumptive intervening zone +subset: human_subset +subset: mouse_subset xref: ZFA:0001342 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:2007023 ! posterior neural keel @@ -372797,6 +393606,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001343 name: telencephalon diencephalon boundary +subset: human_subset +subset: mouse_subset xref: ZFA:0001343 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction @@ -372806,6 +393617,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001347 name: stratum fibrosum et griseum superficiale +subset: human_subset +subset: mouse_subset xref: ZFA:0001347 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -372815,6 +393628,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001348 name: stratum marginale +subset: human_subset +subset: mouse_subset xref: ZFA:0001348 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -372824,6 +393639,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001349 name: stratum opticum +subset: human_subset +subset: mouse_subset xref: ZFA:0001349 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -372833,6 +393650,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001352 name: stratum periventriculare +subset: human_subset +subset: mouse_subset xref: ZFA:0001352 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -372848,6 +393667,8 @@ is_obsolete: true [Term] id: UBERON:2001357 name: alar plate midbrain +subset: human_subset +subset: mouse_subset xref: ZFA:0001357 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -372873,6 +393694,8 @@ is_obsolete: true id: UBERON:2001361 name: basiventral def: "Basiventrals are bilaterally paired cartilages lateral to the notochord which are replaced by ossified parapophyses or hemal arches." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "arcualia" RELATED [TAO:0001361] xref: ZFA:0001361 is_a: UBERON:2001457 ! postcranial axial cartilage @@ -372894,6 +393717,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001364 name: hemal spine def: "Hemal spines are extensions of hemal arches in the ventral skeletogenous septum of the caudal region." [ZFIN:curator] +subset: mouse_subset synonym: "haemacanthe" EXACT [PSPUB:0000115] synonym: "haemal spine" EXACT [TAO:0001364] synonym: "hémacanthe" EXACT [PSPUB:0000143] @@ -372908,6 +393732,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001366 name: tract of the postoptic commissure +subset: human_subset +subset: mouse_subset synonym: "TPOC" EXACT [TAO:0001366] xref: ZFA:0001366 is_a: UBERON:0003931 ! diencephalic white matter @@ -372917,6 +393743,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001371 name: pancreatic system +subset: human_subset +subset: mouse_subset xref: ZFA:0001371 is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0000949 ! endocrine system @@ -372935,6 +393763,8 @@ is_obsolete: true [Term] id: UBERON:2001378 name: axial hypoblast +subset: human_subset +subset: mouse_subset xref: ZFA:0001378 is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0003062 ! primitive knot @@ -372945,6 +393775,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001382 name: epibranchial bone uncinate process def: "Epibranchials 1-3 in adults are compound elements formed by the fusion of epibranchial cartilages and the so-called uncinate processes. Posteromedially directed uncinate processes develop on the posterior edge of epibranchials 1-3. These appear as separate centers of chondrification (6.2 mm) that later fuse laterally to the posterior edges of the epibranchial cartilages (6.8 mm)." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001382 is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000658 ! epibranchial bone @@ -372954,6 +393786,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001388 name: epithelial mesenchymal boundary of regenerating fin/limb def: "An epithelial-mesenchymal boundary that is part of a regenerating fin/limb." [OBOL:automatic] +subset: human_subset +subset: mouse_subset xref: TAO:0001388 xref: ZFA:0001388 is_a: UBERON:0012437 ! epithelial-mesenchymal boundary @@ -372966,6 +393800,8 @@ id: UBERON:2001389 name: regeneration epithelium of fin/limb def: "An epithelium that is part of a regenerating fin/limb." [OBOL:automatic] subset: efo_slim +subset: human_subset +subset: mouse_subset synonym: "epidermal cap" BROAD [ZFA:0001389] synonym: "epidermal cap of fin" EXACT [] synonym: "wound epidermis" BROAD [ZFA:0001389] @@ -372998,6 +393834,8 @@ relationship: part_of UBERON:2001468 ! anterior lateral line system id: UBERON:2001392 name: parapophysis 1 def: "Parapophysis that is the lateral projections from the first centrum in cyprinids, absent in catostomids, and absent in characiphysans (Fink and Fink, 1996)." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "basipophysis 1" EXACT [TAO:0001392] synonym: "lateral process 1" EXACT [TAO:0001392] xref: ZFA:0001392 @@ -373010,6 +393848,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001393 name: parapophysis 2 def: "Parapophysis that is lateral projection from the second centrum, absent in Siluriformes (Fink and Fink, 1996)." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "basipophysis" EXACT [TAO:0001393] synonym: "lateral process 2" EXACT [TAO:0001393] xref: ZFA:0001393 @@ -373021,6 +393861,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001394 name: neural arch 3 def: "Neural arch 3 is expanded and fused to supraneural 3 as part of a neural complex roofing and protecting the neural canal." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001394 is_a: UBERON:0003861 ! neural arch relationship: part_of UBERON:2001169 ! vertebral element 3 @@ -373030,6 +393872,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001395 name: neural arch 4 def: "Neural arch 4 is expanded and fused to supraneural 3 as part of the neural complex. A reduced neural spine projects from the posterior margin of the neural complex." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001395 is_a: UBERON:0003861 ! neural arch relationship: part_of UBERON:2001170 ! vertebral element 4 @@ -373039,6 +393883,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001396 name: parapophysis + rib of vertebra 4 def: "The parapophysis + rib, fused to the centrum, extends laterally then angles anteroventrally. A thin plate, the os suspensorium fuses to its median surface." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "fourth pleural rib plus parapophysis" EXACT [TAO:0001396] synonym: "fourth rib plus parapophysis" EXACT [TAO:0001396] synonym: "parapophysis/rib" EXACT [TAO:0001396] @@ -373060,6 +393906,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001403 name: supraethmoid def: "Dermal bone that first appears as paired ossifications in the membrane (dermis) dorsolateral to the ethmoid cartilage and anterolateral to the lateral ethmoids, later having the appearance of one butterfly-shaped element. Fused to the anterodorsal margin of the mesethmoid. Bordered anteriorly by the kinethmoid and posteriorly by the frontal." [TAO:GA_TG] +subset: human_subset +subset: mouse_subset xref: ZFA:0001403 is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011164 ! neurocranium bone @@ -373071,6 +393919,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001404 name: preethmoid bone def: "Small rounded to egg-shaped cartilage bone that sits in an anterolateral depression on the prevomer. Articulates with the autopalatine in all cypriniforms." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001404 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0011164 ! neurocranium bone @@ -373084,6 +393934,8 @@ id: UBERON:2001406 name: kinethmoid bone def: "Sesamoid bone located in the premaxillary-ethmoid ligament, between the mesethmoid and the premaxilla. The kinethmoid is an unpaired median bone." [TAO:GA_TG, ZFIN:curator] comment: The kinethmoid is part of the protrusion mechanism of the upper jaw and is restricted to cypriniform fishes. +subset: human_subset +subset: mouse_subset synonym: "kinethmoideum bone" EXACT [TAO:0001406] xref: ZFA:0001406 is_a: UBERON:0002513 ! endochondral bone @@ -373100,6 +393952,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001407 name: infraorbital 2 def: "Infraorbital that is the second bone of the infraorbital series." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001407 is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -373108,6 +393962,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001408 name: infraorbital 3 def: "Infraorbital that is the third bone of the infraorbital series." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001408 is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -373116,6 +393972,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001409 name: infraorbital 4 def: "Infraorbital that is the fourth bone of the infraorbital series." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001409 is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -373125,6 +393983,8 @@ id: UBERON:2001412 name: epiotic alt_id: UBERON:2000659 def: "Endochondral bone that borders that medial edge of the posttemporal fossa. The epiotics are sutured to parietals and supraoccipital dorsally, the exoccipitals ventrally and the pterotics laterally. The epiotic is a paired bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "epioccipital" EXACT [TAO:0001412] synonym: "epioccipitals" EXACT OMO:0003004 [TAO:0001412] xref: ZFA:0001412 @@ -373217,6 +394077,8 @@ replaced_by: UBERON:4000176 [Term] id: UBERON:2001425 name: basal plate cartilage +subset: human_subset +subset: mouse_subset xref: ZFA:0001425 is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: overlaps UBERON:0001703 ! neurocranium @@ -373226,6 +394088,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001426 name: posterior naris +subset: human_subset +subset: mouse_subset synonym: "posterior nostril" EXACT [TAO:0001426] xref: ZFA:0001426 is_a: UBERON:0005928 ! external naris @@ -373234,6 +394098,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001427 name: anterior naris +subset: human_subset +subset: mouse_subset synonym: "anterior nostril" EXACT [TAO:0001427] xref: ZFA:0001427 is_a: UBERON:0005928 ! external naris @@ -373242,6 +394108,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001428 name: olfactory rosette +subset: human_subset +subset: mouse_subset synonym: "nasal rosette" EXACT [TAO:0001428] xref: ZFA:0001428 is_a: UBERON:0019306 ! nose epithelium @@ -373252,6 +394120,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001430 name: pneumatic duct def: "A duct connecting the esophagus to the posterior chamber of the swim bladder. Finney et al, 2006." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001430 is_a: UBERON:0003928 ! digestive system duct relationship: part_of UBERON:0001043 ! esophagus @@ -373260,6 +394130,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001431 name: primitive olfactory epithelium +subset: human_subset +subset: mouse_subset xref: ZFA:0001431 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium @@ -373315,6 +394187,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001457 name: postcranial axial cartilage def: "Cartilage which is part of the axial skeleton." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001457 is_a: UBERON:0007844 ! cartilage element intersection_of: UBERON:0007844 ! cartilage element @@ -373334,6 +394208,8 @@ replaced_by: UBERON:0015178 [Term] id: UBERON:2001463 name: melanophore stripe +subset: human_subset +subset: mouse_subset synonym: "bar" EXACT [] synonym: "melanophore bar" EXACT [] synonym: "stripe" EXACT [TAO:0001463] @@ -373345,6 +394221,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001467 name: pharyngeal mesoderm +subset: human_subset +subset: mouse_subset xref: ZFA:0001467 is_a: UBERON:0000926 ! mesoderm relationship: part_of UBERON:0001042 ! chordate pharynx @@ -373404,6 +394282,8 @@ replaced_by: ZFA:0001473 id: UBERON:2001474 name: sublingual dorsal and ventral separate def: "Anatomical cluster consisting of the paired sublingual dorsal ossification and sublingual ventral ossification." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -373411,6 +394291,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001475 name: sublingual dorsal ossification def: "Sublingual that is the dorsal element paired with the sublingual ventral ossification." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001275 ! sublingual bone relationship: develops_from UBERON:2001532 ! sublingual dorsal cartilage relationship: part_of UBERON:2001474 ! sublingual dorsal and ventral separate @@ -373420,6 +394302,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001476 name: sublingual ventral ossification def: "Sublingual that is the ventral element paired with the sublingual dorsal ossification." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001275 ! sublingual bone relationship: develops_from UBERON:2001545 ! sublingual ventral cartilage relationship: part_of UBERON:2001474 ! sublingual dorsal and ventral separate @@ -373475,6 +394359,8 @@ replaced_by: ZFA:0001484 id: UBERON:2001502 name: epiphyseal bar def: "Bilaterally paired medial bar of cartilage formed at midorbit through medial chondrification from triangles of cartilage that later form the junction of the taeniae marginales anterior, taeniae marginales posterior and the epiphyseal bar." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001502 is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: overlaps UBERON:0001703 ! neurocranium @@ -373484,6 +394370,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001504 name: occipital arch cartilage def: "Cranial cartilage which is a paired anterodorsal projection of the posterior end of the parachordal cartilage. It lies lateral to the notochord, just anterior to the posterior tip of the otic capsule. The bilaterally paired occipital arch cartilages fuse anterodorsally to the posterior edges of the auditory capsules and meet medially as the tectum synoticum (by 12 dpf)." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001504 is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: overlaps UBERON:0001703 ! neurocranium @@ -373493,6 +394381,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001505 name: taenia marginalis anterior def: "Cartilage bar (bilaterally paired) that grows anteroventrally from the epiphyseal bar to join the anterolatera1 edge of the ethmoid plate." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "orbital cartilage" RELATED [TAO:0001505] xref: ZFA:0001505 is_a: UBERON:0003932 ! cartilage element of chondrocranium @@ -373504,6 +394394,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001508 name: trabecula communis def: "Cartilage formed via medial fusion between bilaterally paired trabecula crani." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001508 is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: overlaps UBERON:0001703 ! neurocranium @@ -373516,6 +394408,8 @@ name: interhyal cartilage alt_id: UBERON:2000218 def: "Pharyngeal arch cartilage that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic." [ZFIN:curator] comment: It articulates ventrally with the posterior end of the ceratohyal cartilage or the posterior ceratohyal. +subset: human_subset +subset: mouse_subset synonym: "stylohyal cartilage" EXACT [TAO:0001511] xref: ZFA:0001511 is_a: UBERON:0011004 ! pharyngeal arch cartilage @@ -373527,6 +394421,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001515 name: taenia marginalis posterior def: "Cartilage bar (bilaterally paired) that is first visible as an anterior extension of the auditory capsule. It grows anteriorly toward the middle of the orbit where it is connected to its mate on the other side by the epiphyseal bar." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "orbital cartilage" RELATED [TAO:0001515] xref: ZFA:0001515 is_a: UBERON:0003932 ! cartilage element of chondrocranium @@ -373538,6 +394434,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001516 name: ceratobranchial cartilage def: "Pharyngeal arch cartilage that forms the largest skeletal element of the ventral branchial arches." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001516 is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:2001898 ! ceratobranchial element @@ -373547,6 +394445,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001517 name: ceratobranchial 2 cartilage def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001517 is_a: UBERON:2001516 ! ceratobranchial cartilage is_a: UBERON:2001900 ! ceratobranchial 2 element @@ -373556,6 +394456,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001518 name: ceratobranchial 3 cartilage def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001518 is_a: UBERON:2001516 ! ceratobranchial cartilage is_a: UBERON:2001901 ! ceratobranchial 3 element @@ -373565,6 +394467,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001519 name: ceratobranchial 4 cartilage def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001519 is_a: UBERON:2001516 ! ceratobranchial cartilage is_a: UBERON:2001902 ! ceratobranchial 4 element @@ -373574,6 +394478,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001520 name: ceratobranchial 1 cartilage def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001520 is_a: UBERON:2001516 ! ceratobranchial cartilage is_a: UBERON:2001899 ! ceratobranchial 1 element @@ -373583,6 +394489,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001521 name: ceratobranchial 5 cartilage def: "Ceratobranchial cartilage that is the most posterior, bilaterally paired ventral pharyngeal arch cartilage." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001521 is_a: UBERON:2001516 ! ceratobranchial cartilage is_a: UBERON:2001903 ! ceratobranchial 5 element @@ -373593,6 +394501,8 @@ id: UBERON:2001522 name: hypobranchial cartilage def: "Pharyngeal arch cartilage that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial cartilage or bone." [ZFIN:curator] comment: The hypobranchial cartilage usually articulates medially with a basibranchial bone or cartilage. +subset: human_subset +subset: mouse_subset xref: ZFA:0001522 is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:2001893 ! hypobranchial element @@ -373602,6 +394512,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001523 name: hypobranchial 4 cartilage def: "Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001523 is_a: UBERON:2001522 ! hypobranchial cartilage is_a: UBERON:2001897 ! hypobranchial 4 element @@ -373611,6 +394523,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001524 name: hypobranchial 1 cartilage def: "Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001524 is_a: UBERON:2001522 ! hypobranchial cartilage is_a: UBERON:2001894 ! hypobranchial 1 element @@ -373620,6 +394534,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001525 name: hypobranchial 2 cartilage def: "Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001525 is_a: UBERON:2001522 ! hypobranchial cartilage is_a: UBERON:2001895 ! hypobranchial 2 element @@ -373629,6 +394545,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001526 name: hypobranchial 3 cartilage def: "Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001526 is_a: UBERON:2001522 ! hypobranchial cartilage is_a: UBERON:2001896 ! hypobranchial 3 element @@ -373639,6 +394557,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001527 name: epibranchial cartilage def: "Pharyngeal arch cartilage that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001527 is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:2001904 ! epibranchial element @@ -373648,6 +394568,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001528 name: epibranchial 1 cartilage def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001528 is_a: UBERON:2001527 ! epibranchial cartilage is_a: UBERON:2001905 ! epibranchial 1 element @@ -373657,6 +394579,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001529 name: epibranchial 3 cartilage def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001529 is_a: UBERON:2001527 ! epibranchial cartilage is_a: UBERON:2001907 ! epibranchial 3 element @@ -373668,6 +394592,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001530 name: epibranchial 2 cartilage def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001530 is_a: UBERON:2001527 ! epibranchial cartilage is_a: UBERON:2001906 ! epibranchial 2 element @@ -373677,6 +394603,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001531 name: epibranchial 4 cartilage def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001531 is_a: UBERON:2001527 ! epibranchial cartilage is_a: UBERON:2001908 ! epibranchial 4 element @@ -373687,6 +394615,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001532 name: sublingual dorsal cartilage def: "Sublingual cartilage that is the dorsal element paired with the sublingual ventral cartilage." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001544 ! sublingual cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -373694,6 +394624,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001533 name: pharyngobranchial cartilage def: "Paired cartilages that project medially from the medial tips of epibranchials." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "infrapharyngobranchial cartilage" EXACT [] xref: ZFA:0001533 is_a: UBERON:0011004 ! pharyngeal arch cartilage @@ -373704,6 +394636,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001534 name: pharyngobranchial 3 cartilage def: "Pharyngobranchial cartilage, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 2 element." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001534 is_a: UBERON:2001533 ! pharyngobranchial cartilage is_a: UBERON:2001912 ! pharyngobranchial 3 element @@ -373722,6 +394656,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001536 name: pharyngobranchial 2 cartilage def: "Pharyngobranchial cartilage, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 1 element." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001536 is_a: UBERON:2001533 ! pharyngobranchial cartilage is_a: UBERON:2001911 ! pharyngobranchial 2 element @@ -373731,6 +394667,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001537 name: mesocoracoid cartilage def: "Pectoral fin cartilage that is part of the embryonic primary pectoral girdle from which the mesocoracoid bone will ossify endochondrally." [TAO:GA_TG, ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "mesocoracoideum" RELATED [TAO:0001537] xref: ZFA:0001537 is_a: UBERON:0007844 ! cartilage element @@ -373755,6 +394693,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001539 name: basipterygium cartilage def: "Bilaterally paired small, rodlike cartilages on the ventral surface of the abdomen (present at 7.9 mm). Their posterior tips expand laterally, forming L-shaped cartilages. Medially, a posterior spur of cartilage develops, which will later ossify as the ischiac process (Weitzman 1962)." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001539 is_a: UBERON:0007844 ! cartilage element is_a: UBERON:2100623 ! basipterygium element @@ -373792,6 +394732,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001544 name: sublingual cartilage def: "Pharyngeal arch cartilage that is the median cartilage of the ventral hyoid arch, generally lying between the paired ventral hypohyals." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011004 ! pharyngeal arch cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -373799,6 +394741,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001545 name: sublingual ventral cartilage def: "Sublingual cartilage that is the ventral element paired with the sublingual dorsal cartilage." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001544 ! sublingual cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -373806,6 +394750,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001546 name: neural spine 4 def: "Neural spine that is associated with the fourth vertebra." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001600 is_a: UBERON:0001076 ! neural spine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -373968,6 +394914,8 @@ replaced_by: CL:0000025 id: UBERON:2001571 name: postovulatory follicle subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: ZFA:0001571 is_a: UBERON:0001305 ! ovarian follicle relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -373977,6 +394925,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001577 name: premaxilla ascending process def: "Process of the premaxilla that extends posteriorly and overlays the mesethmoid." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001577 is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -374016,6 +394966,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001582 name: non-Weberian precaudal vertebra +subset: human_subset +subset: mouse_subset xref: ZFA:0001582 is_a: UBERON:4300223 ! precaudal vertebra property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374024,6 +394976,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001583 name: preural centrum 1+ ural centrum 1 def: "Urostyle that is the result of fusion of preural centrum 1 with the first ural centrum (of polyural terminology)." [TAO:GA_TG] +subset: human_subset +subset: mouse_subset xref: ZFA:0001583 is_a: UBERON:0003106 ! urostyle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374150,6 +395104,8 @@ id: UBERON:2001603 name: maxilla ascending process def: "Process that is the upper portion of the maxilla that rests on the posterior surface of the lateral portion of the premaxilla." [TAO:wd] comment: Synonyms maxilla ascending arm used in Zanata and Vari 2005, and maxilla upper arm used in Weitzman 1962 +subset: human_subset +subset: mouse_subset synonym: "maxilla ascending arm" EXACT [TAO:0001603] synonym: "maxilla upper arm" EXACT [TAO:0001603] is_a: UBERON:0010313 ! neural crest-derived structure @@ -374169,6 +395125,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001605 name: caudal scute series +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374185,6 +395143,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001607 name: basipterygoid process of parasphenoid def: "Process that is the paired process of the parasphenoid that articulates with the suspensorium." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "basipterygoid process" EXACT [TAO:0001607] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection @@ -374208,6 +395168,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001609 name: pharyngobranchial 2 bone uncinate process def: "Bony projection that is part of the pharyngobranchial 2 bone." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001250 ! pharyngobranchial 2 bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374277,6 +395239,8 @@ relationship: develops_from UBERON:2201614 ! anal fin middle radial cartilage id: UBERON:2001615 name: sphenotic spine def: "Process of the sphenotic. The process may project antero-laterally or laterally or ventro-laterally and it has different development in different fish groups. The sphenotic spine is paired." [TAO:GA_TG] +subset: human_subset +subset: mouse_subset synonym: "sphenotic process" EXACT [TAO:0001615] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000587 ! sphenotic @@ -374318,6 +395282,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001620 name: lagenar capsule def: "Anatomical cluster that consists of a bulla formed by the exoccipital and basioccipital bones, and surrounds the lagena." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001627 is_a: UBERON:0000075 ! subdivision of skeletal system relationship: part_of UBERON:0003128 ! cranium @@ -374328,6 +395294,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001622 name: odontode def: "Multi-tissue structure composed of enameloid and dentine surrounding a pulp cavity, and found either attached to dermal bone or freely in the skin." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "odontodes" EXACT OMO:0003004 [TAO:0001622] is_a: UBERON:0000481 ! multi-tissue structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374337,6 +395305,8 @@ id: UBERON:2001623 name: type 1 odontode def: "Odontode that is attached to dermal bone." [TAO:wd] comment: Term from Schaefer & Buitrago-Suarez 2002. +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:2001622 ! odontode relationship: part_of NCBITaxon:6072 ! Eumetazoa @@ -374348,6 +395318,8 @@ id: UBERON:2001624 name: type 2 odontode def: "Odontode that is attached to the skin and without association to dermal bone." [TAO:wd] comment: Term from Schaefer & Buitrago-Suarez 2002. +subset: human_subset +subset: mouse_subset is_a: UBERON:2001622 ! odontode relationship: part_of NCBITaxon:6072 ! Eumetazoa relationship: part_of UBERON:0002199 ! integument @@ -374357,6 +395329,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001626 name: premaxillary tooth def: "Tooth that is attached to the premaxilla." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003267 ! tooth of upper jaw intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: attaches_to UBERON:0002244 ! premaxilla @@ -374390,6 +395364,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001632 name: ectopterygoid tooth def: "Tooth that is attached to the ectopterygoid bone." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0012070 ! palatal tooth intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: attaches_to UBERON:0011634 ! ectopterygoid bone @@ -374401,6 +395377,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001633 name: entopterygoid tooth def: "Tooth that is attached to the entopterygoid bone." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "mesopterygoid tooth" EXACT [TAO:0001633] is_a: UBERON:0001091 ! calcareous tooth intersection_of: UBERON:0001091 ! calcareous tooth @@ -374413,6 +395391,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001634 name: pharyngobranchial 1 cartilage def: "Most anterior pharyngobranchial cartilage, located medial to the epibranchials." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "infrapharyngobranchial 1 cartilage" EXACT [TAO:0001634] is_a: UBERON:2001533 ! pharyngobranchial cartilage is_a: UBERON:2001910 ! pharyngobranchial 1 element @@ -374422,6 +395402,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001635 name: pharyngobranchial 1 bone def: "Most anterior pharyngobranchial bone, located medial to the epibranchials." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "infrapharyngobranchial 1 bone" EXACT [TAO:0001635] is_a: UBERON:2000527 ! pharyngobranchial bone is_a: UBERON:2001910 ! pharyngobranchial 1 element @@ -374432,6 +395414,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001636 name: pharyngobranchial 4 bone def: "Most posterior pharyngobranchial bone, located medial to the epibranchials." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "infrapharyngobranchial 4 bone" EXACT [TAO:0001636] is_a: UBERON:2000527 ! pharyngobranchial bone is_a: UBERON:2001913 ! pharyngobranchial 4 element @@ -374443,6 +395427,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001640 name: notochordal ossification def: "Perichordal bone that surrounds the anterior tip of the notochord." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001631 is_a: UBERON:0008909 ! perichordal bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374451,6 +395437,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001647 name: pharyngeal tooth plate def: "Dermal bone of the pharyngeal arches usually bearing teeth." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "pharyngeal toothplate" EXACT [TAO:0001647] synonym: "tooth plate" EXACT [] synonym: "toothplate" EXACT [] @@ -374461,6 +395449,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001648 name: basihyal tooth plate def: "Pharyngeal tooth plate that lies dorsal to the basihyal cartilage or bone." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "basihyal toothplate" EXACT [TAO:0001648] is_a: UBERON:2001647 ! pharyngeal tooth plate relationship: part_of UBERON:0011153 ! ventral hyoid arch skeleton @@ -374470,6 +395460,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001649 name: basihyal tooth def: "Tooth that is attached to the basihyal tooth plate." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001091 ! calcareous tooth is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth @@ -374481,6 +395473,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001650 name: pharyngobranchial 2 tooth plate def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 2 bone." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "pharyngobranchial 2 toothplate" EXACT [TAO:0001650] is_a: UBERON:2002015 ! pharyngobranchial tooth plate relationship: part_of UBERON:2001231 ! pharyngeal arch 4 skeleton @@ -374490,6 +395484,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001651 name: pharyngobranchial 2 tooth def: "Tooth that is attached to the pharyngobranchial 2 tooth plate." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001091 ! calcareous tooth is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth @@ -374501,6 +395497,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001652 name: pharyngobranchial 3 tooth plate def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 3 bone." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "pharyngobranchial 3 toothplate" EXACT [TAO:0001652] is_a: UBERON:2002015 ! pharyngobranchial tooth plate relationship: part_of UBERON:2001232 ! pharyngeal arch 5 skeleton @@ -374510,6 +395508,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001653 name: pharyngobranchial 3 tooth def: "Tooth that is part of the pharyngobranchial 3 tooth plate." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001091 ! calcareous tooth is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth @@ -374521,6 +395521,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001654 name: upper pharyngeal 4 tooth plate def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 4, and located anterior to upper pharyngeal 5 tooth plate." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "upper pharyngeal 4 toothplate" EXACT [TAO:0001654] is_a: UBERON:2001647 ! pharyngeal tooth plate relationship: part_of UBERON:2001230 ! pharyngeal arch 6 skeleton @@ -374530,6 +395532,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001655 name: upper pharyngeal 4 tooth def: "Tooth that is attached to the upper pharyngeal 4 tooth plate." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001091 ! calcareous tooth is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth @@ -374541,6 +395545,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001656 name: upper pharyngeal 5 tooth plate def: "Pharyngeal toothplate that lies ventral to pharyngobranchial 4, and located posterior to upper pharyngeal 4 tooth plate." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "upper pharyngeal 5 toothplate" EXACT [TAO:0001656] is_a: UBERON:2001647 ! pharyngeal tooth plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374549,6 +395555,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001657 name: upper pharyngeal 5 tooth def: "Tooth that is attached to the upper pharyngeal 5 tooth plate." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001091 ! calcareous tooth is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth @@ -374561,6 +395569,8 @@ id: UBERON:2001658 name: upper pharyngeal tooth plate def: "Pharyngeal tooth plate that lies ventral to pharyngobranchials 3 and 4." [TAO:wd] comment: This represents the condition found in catfishes. +subset: human_subset +subset: mouse_subset synonym: "upper pharyngeal toothplate" EXACT [TAO:0001658] is_a: UBERON:2001647 ! pharyngeal tooth plate relationship: overlaps UBERON:2001860 ! epibranchial 4-upper pharyngeal toothplate joint @@ -374572,6 +395582,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001659 name: upper pharyngeal tooth def: "Tooth that is attached to the upper pharyngeal tooth plate." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001091 ! calcareous tooth is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth @@ -374583,6 +395595,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001660 name: basibranchial tooth def: "Tooth that is part of the basibranchial tooth plate." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001091 ! calcareous tooth is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth @@ -374594,6 +395608,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001661 name: basibranchial tooth plate def: "Pharyngeal tooth plate that lies dorsal to basibranchials 1-3." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "basibranchial 1-3 toothplates" EXACT OMO:0003004 [TAO:0001661] synonym: "basibranchial toothplate" EXACT [TAO:0001661] is_a: UBERON:2001647 ! pharyngeal tooth plate @@ -374604,6 +395620,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001662 name: basibranchial 4 tooth plate def: "Pharyngeal tooth plate that lies dorsal to basibranchial 4 bone." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "basibranchial 4 toothplate" EXACT [TAO:0001662] is_a: UBERON:2001647 ! pharyngeal tooth plate relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton @@ -374613,6 +395631,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001663 name: basibranchial 4 tooth def: "Tooth that is attached to the basibranchial 4 tooth plate." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001091 ! calcareous tooth is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth @@ -374624,6 +395644,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001664 name: basibranchial 2 tooth plate def: "Pharyngeal tooth plate that lies dorsal to basibranchial 2 bone." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "basibranchial 2 toothplate" EXACT [TAO:0001664] is_a: UBERON:2001647 ! pharyngeal tooth plate relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton @@ -374633,6 +395655,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001665 name: basibranchial 2 tooth def: "Tooth that is attached to the basibranchial 2 tooth plate." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001091 ! calcareous tooth is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth @@ -374644,6 +395668,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001666 name: rudimentary neural arch def: "Neural arch on the urostyle. It does not support a neural spine. Sanger and McCune 2002." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0001641 is_a: UBERON:0003861 ! neural arch relationship: part_of UBERON:0003106 ! urostyle @@ -374678,6 +395704,8 @@ relationship: develops_from UBERON:2201672 ! dorsal fin radial cartilage id: UBERON:2001674 name: infraorbital 6 def: "Infraorbital that is the sixth bone of the infraorbital series." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "dermosphenotic" RELATED [TAO:0001674] is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374686,6 +395714,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001675 name: mesethmoid cornu def: "Bony projection that extends from the mesethmoid anteriorly. Mesethmoid cornua are paired processes each articulating with its ipsilateral premaxilla and both cornua bounding a median mesethmoid cleft." [TAO:pem] +subset: human_subset +subset: mouse_subset synonym: "cornu" EXACT [TAO:0001675] synonym: "cornua" EXACT OMO:0003004 [TAO:0001675] synonym: "cornuae" EXACT OMO:0003004 [TAO:0001675] @@ -374697,6 +395727,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001676 name: mesethmoid-premaxillary joint def: "Joint that articulates the mesethmoid and premaxilla. Mesethmoid-premaxillary joint is paired." [TAO:pem] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001950 ! inter-premaxillary joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: connects UBERON:0002244 ! premaxilla @@ -374709,6 +395741,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001677 name: mesethmoid-nasal joint def: "Joint that articulates the mesethmoid and nasal. Mesethmoid-nasal joint is paired." [TAO:pem] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: connects UBERON:0001681 ! nasal bone @@ -374721,6 +395755,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001678 name: mesethmoid-frontal joint def: "Joint that articulates the mesethmoid and frontal. Mesethmoid-frontal joint is paired." [TAO:pem] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: connects UBERON:0004866 ! actinopterygian frontal bone @@ -374746,6 +395782,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001680 name: mesethmoid-vomer joint def: "Joint that articulates the mesethmoid and vomer. Mesethmoid-vomer joint is unpaired." [TAO:pem] +subset: human_subset +subset: mouse_subset synonym: "mesethmoid-prevomer joint" EXACT [TAO:0001680] xref: ZFA:0005649 is_a: UBERON:0000982 ! skeletal joint @@ -374760,6 +395798,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001681 name: cornu mesial process def: "Bony projection that is mesially-directed and off the anteromedial corner of each mesethmoid cornu." [TAO:pem] +subset: human_subset +subset: mouse_subset is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001675 ! mesethmoid cornu property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374768,6 +395808,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001683 name: transcapular ligament def: "Ligament that is attached to supracleithrum and basioccipital." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "Baudelot's ligament" EXACT [TAO:0001683] synonym: "transscapular ligament" EXACT [TAO:0001683] is_a: UBERON:0008846 ! skeletal ligament @@ -374777,6 +395819,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001684 name: ossified transcapular ligament def: "Membrane bone that is fused to supracleithrum and is jointed to basioccipital and exoccipital." [TAO:pem] +subset: human_subset +subset: mouse_subset synonym: "ossified Baudelot's ligament" EXACT [TAO:0001684] synonym: "ossified transscapular ligament" EXACT [TAO:0001684] is_a: UBERON:0007842 ! membrane bone @@ -374787,6 +395831,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001685 name: lateral ethmoid-ectopterygoid ligament def: "Lateral ethmoid-ectopterygoid ligament is a ligament that connects the lateral ethmoid to the ectopterygoid." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005503 is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374795,6 +395841,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001686 name: bony shelf above orbit def: "The bony shelf above orbit is an anatomical cluster formed by the dorsolateral portions of the lateral ethmoid, frontal and sphenotic bones that forms the dorsal margin of the orbit." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005531 is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0010323 ! cranial skeletal system @@ -374804,6 +395852,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001687 name: interopercular-mandibular ligament def: "Interopercular-mandibular ligament is a ligament that connects the interopercle to an element of the lower jaw, typically the retroarticular." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "interopercular-retroarticular ligament" EXACT [TAO:0001687] synonym: "interoperculo-mandibular ligament" EXACT [TAO:0001687] synonym: "interoperculomandibular ligament" EXACT [TAO:0001687] @@ -374853,6 +395903,8 @@ id: UBERON:2001692 name: median premaxilla def: "Dermal bone that is located in the middle of the upper jaw, independently formed by fusion of tooth bases attached to soft tissue in the middle portion of the upper lip. The median premaxilla bears teeth in adults." [TAO:wd] comment: Recorded in trichomycterid subfamilies Stegophilinae and Vandelliinae (Baskin, 1973). submitted by Mario de Pinna. +subset: human_subset +subset: mouse_subset is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011597 ! bone of upper jaw relationship: part_of UBERON:0003113 ! dermatocranium @@ -374864,6 +395916,8 @@ id: UBERON:2001693 name: protractor operculi def: "Muscle located in the lateral region of the cheek, linking the lateral surface of opercle with the posterolateral margin of the suspensorium (usually the preopercle)." [TAO:wd] comment: Occurs in most members of the Trichomycteridae, except in basal Copionodontinae and Trichogeninae (de Pinna, 1992). +subset: human_subset +subset: mouse_subset is_a: UBERON:0002376 ! cranial muscle relationship: part_of UBERON:0001567 ! cheek property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374873,6 +395927,8 @@ id: UBERON:2001694 name: humerovertebral ligament def: "Ligament that links the tip of the postcleithral process of the cleithrum with either the vertebral column (at the vertebral parapophysis or rib of the sixth vertebra) or with the soft tissue around the postcleithral region." [TAO:wd] comment: Recorded in siluriform families Aspredinidae, Amblycipitidae, Akysidae, Sisoridae and Erethistidae (dePinna 1996). Submitted by Mario de Pinna. +subset: human_subset +subset: mouse_subset is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374881,6 +395937,8 @@ id: UBERON:2001695 name: mediopharyngobranchial def: "Pharyngeal arch cartilage, elongate and usually bifurcated posteriorly, located anteriorly on the upper branchial arches, attached to the anterior tips of the first infrapharyngobranchials. It supports rows of gill rakers on each side and is not homologous to other structures in the teleost gill-arch skeleton. One or two mediopharyngobranchials may be present." [TAO:wd] comment: Recorded in several Clupeoidei (Nelson, 1967). Submitted by Mario de Pinna. +subset: human_subset +subset: mouse_subset is_a: UBERON:0011004 ! pharyngeal arch cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374889,6 +395947,8 @@ id: UBERON:2001696 name: gongyloid cartilage def: "Pharyngeal arch cartilage present on the dorsal surface of the middle portion of the upper branchial arches, dorsal to the point of contact between the second and third infrapharyngobranchials. It is round or cylyndrical in shape. Not homologous to the mediopharyngobranchial." [TAO:wd] comment: Recorded in Pristigasteridae and Engraulidae, of Clupeiformes, apparently also present in Chanos, of Gonorynchiformes (Di Dario, 2002). +subset: human_subset +subset: mouse_subset is_a: UBERON:0011004 ! pharyngeal arch cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374897,6 +395957,8 @@ id: UBERON:2001697 name: transverse radial def: "Endochondral bone, which may be ossified or not in adults, located immediately anteriorly to the pterygiophore series of the anal fin. The structure is usually cylindrical, and its plane of symmetry is transverse to that of pterygiophores and fin rays." [TAO:wd] comment: Recorded in some Cetopsidae, Clariidae and Austroglanididae (Siluriformes) (De Pinna et al., 2007). +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0002090 ! postcranial axial skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374937,6 +395999,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001701 name: basibranchial 5 bone def: "Basibranchial bone that is ventral, median, and associated with branchial arch 5 (pharyngeal arch 7). Develops in posterior copula cartilage or basibranchial 5 cartilage." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone is_a: UBERON:2001919 ! basibranchial 5 element @@ -374950,6 +396014,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001702 name: infraorbital 7 def: "Infraorbital that is the seventh bone of the infraorbital series." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374957,6 +396023,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001703 name: infraorbital 8 def: "Infraorbital that is the eighth bone of the infraorbital series." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374964,6 +396032,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001704 name: infraorbital 9 def: "Infraorbital that is the ninth bone of the infraorbital series." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374971,6 +396041,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001705 name: infraorbital 10 def: "Infraorbital that is the tenth bone of the infraorbital series." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374978,6 +396050,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001706 name: infraorbital 11 def: "Infraorbital that is the eleventh bone of the infraorbital series." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374985,6 +396059,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001707 name: infraorbital 12 def: "Infraorbital that is the twelfth bone of the infraorbital series." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2000376 ! infraorbital property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -374992,6 +396068,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001708 name: dermosphenotic def: "Infraorbital that is the last bone of the infraorbital series, carrying the infraorbital canal, and sometimes also the supraorbital, temporal, and/or preopercular canals. The dermosphenotic is sometimes sutured or fused completely to the skull, e.g. to the autosphenotic." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "infraorbital 5" RELATED [TAO:0001708] synonym: "infraorbital 6" RELATED [TAO:0001708] synonym: "infraorbital 7" RELATED [TAO:0001708] @@ -375006,6 +396084,8 @@ id: UBERON:2001709 name: infraorbital series def: "Anatomical cluster that is the series of dermal bones surrounding the orbit and associated with the infraorbital sensory canal." [TAO:GA_TG] comment: The infraorbital series may include the antorbital, a variable number of infraorbitals, and dermosphenotic (or posteriormost dorsal infraorbital). The infraorbital series may be formed by seven (primitively) or less bones in teleosts. Consequently, the so called dermosphenotic may correspond to the seventh, sixth or fifth bone, etc., depending on the taxon. +subset: human_subset +subset: mouse_subset synonym: "circumorbital series" RELATED [TAO:0001709] xref: ZFA:0001649 is_a: UBERON:0000477 ! anatomical cluster @@ -375018,6 +396098,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001710 name: opercle-interopercle joint def: "Joint that articulates the opercle and interopercle. Opercle-interopercle joint is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005478 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -375031,6 +396113,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001711 name: frontal-pterotic joint def: "Joint that articulates the frontal and pterotic. Frontal-pterotic joint is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005468 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -375215,6 +396299,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001732 name: vertebral element 5 def: "Vertebra that is posteriorly adjacent to vertebra 4." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005347 is_a: UBERON:0010913 ! vertebral element relationship: overlaps UBERON:2001940 ! vertebra 4-vertebra 5 joint @@ -375227,6 +396313,8 @@ id: UBERON:2001733 name: mesethmoid ventral diverging lamella def: "Bony projection that is the posterolaterally oriented projection on the ventral region of the mesethmoid. Mesethmoid ventral diverging lamellae are paired and posteriorly contact the lateral ethmoid bones." [TAO:wd] comment: Reference: Weitzman 1962. +subset: human_subset +subset: mouse_subset is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011238 ! mesethmoid bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -375235,6 +396323,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001734 name: posterior process of basipterygium def: "Process that is the posteriorly oriented, paired projection of the basipterygium." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "ischiac process" EXACT [TAO:0001734] synonym: "ischiatic process" EXACT [TAO:0001734] synonym: "posterior pelvic process" EXACT [http://hdl.handle.net/10088/11710] @@ -375248,6 +396338,8 @@ id: UBERON:2001735 name: scapular foramen def: "Foramen that is located in the scapula. The scapular foramen is paired and formed by a ring of bone." [TAO:wd] comment: Weitzman 1962. +subset: human_subset +subset: mouse_subset xref: ZFA:0005431 is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -375265,6 +396357,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001739 name: anterior cranial fontanel def: "Fontanel that is located between the contralateral frontals and anterior to the epiphyseal bar." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "anterior fontanel" RELATED [TAO:0001739] synonym: "frontal fontanel" EXACT [TAO:0001739] synonym: "frontal fontanelle" EXACT [TAO:0001739] @@ -375275,6 +396369,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001740 name: posterior cranial fontanel def: "Fontanel that is located posterior to the epiphyseal bar, and typically located between the contralateral frontals and parietals (if present) and bordered posteriorly by the supraoccipital." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "parietal fontanel" EXACT [TAO:0001740] synonym: "posterior fontanel" RELATED [TAO:0001740] synonym: "posterior fontanelle" RELATED [TAO:0001740] @@ -375286,6 +396382,8 @@ id: UBERON:2001741 name: trigeminofacial foramen def: "Foramen through which branches of cranial nerves V (trigeminal) and VII (facial) exit." [TAO:wd] comment: i]In some vertebrates there are separate trigeminal foramen and facial foramen. +subset: human_subset +subset: mouse_subset synonym: "trigemino-facialis foramen" EXACT [TAO:0001741] synonym: "trigeminofacial nerve foramen" EXACT [TAO:0001741] synonym: "trigeminofacialis foramen" EXACT [TAO:0001741] @@ -375297,6 +396395,8 @@ id: UBERON:2001742 name: auditory foramen def: "Foramen through which cranial nerve VIII (auditory) exits." [TAO:wd] comment: Reference: Weitzman 1962. +subset: human_subset +subset: mouse_subset xref: ZFA:0005419 is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -375305,6 +396405,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001744 name: replacement tooth trench def: "Anatomical space within a bone in which teeth develop." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "replacement tooth crypt" EXACT [TAO:0001744] synonym: "replacement tooth crypts" EXACT OMO:0003004 [TAO:0001744] is_a: UBERON:0000464 ! anatomical space @@ -375314,6 +396416,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001745 name: premaxilla replacement tooth trench def: "Replacement tooth trench that is located in the premaxilla." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001744 ! replacement tooth trench property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -375321,6 +396425,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001746 name: dentary replacement tooth trench def: "Replacement tooth trench that is located in the dentary." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001744 ! replacement tooth trench property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -375329,6 +396435,8 @@ id: UBERON:2001747 name: lateral mesethmoid wing def: "Bony projection located on the anteroventral region of the mesethmoid which articulates with the premaxilla." [TAO:wd] comment: Synonyms: mesethmoid lateral wing (Zanata and Vari 2005) lateral ethmoid wing (Weitzman 1962) premaxillary articular process (Fink and Fink 1996). +subset: human_subset +subset: mouse_subset synonym: "mesethmoid lateral wing" EXACT [TAO:0001747] synonym: "premaxillary articular process" EXACT [TAO:0001747] is_a: UBERON:4100000 ! skeletal element projection @@ -375339,6 +396447,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001748 name: superficial ophthalmic nerve foramen def: "Foramen through which the superficial ophthalmic nerve passes." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005432 is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -375347,6 +396457,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001749 name: dentary-anguloarticular joint def: "Joint that articulates the dentary and anguloarticular. Dentary-anguloarticular joint is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005464 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -375360,6 +396472,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001750 name: rib of vertebra 6 def: "Rib that articulates with the parapophysis of the sixth centrum." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "sixth pleural rib" EXACT [TAO:0001750] xref: ZFA:0005543 is_a: UBERON:0002228 ! rib @@ -375369,6 +396483,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001751 name: rib of vertebra 5 def: "Rib that articulates with the parapophysis of the fifth centrum." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "fifth pleural rib" EXACT [TAO:0001751] xref: ZFA:0005542 is_a: UBERON:0002228 ! rib @@ -375379,6 +396495,8 @@ id: UBERON:2001752 name: pre-narial cartilage def: "The pre-narial cartilage is a cartilage that is located anterior to the anterior naris." [TAO:wd] comment: Chen 1994. +subset: human_subset +subset: mouse_subset is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0011156 ! facial skeleton @@ -375389,6 +396507,8 @@ id: UBERON:2001753 name: posttemporal fossa def: "Fossa where the exoccipital forms the medial portion and the epioccipital forms the lateral margin. The posttemporal fossa in most species has two openings separated by the epioccipital bridge." [ZFIN:ZDB-PUB-961014-192] {comment="http://dx.doi.org/10.1590/S1679-62252010000300001"} comment: Chen 1994 gives these two synonyms: 'temporal fossa', Gauba 1967; and 'temporal groove', Mahajan 1966. +subset: human_subset +subset: mouse_subset synonym: "temporal fossa" RELATED [TAO:0001753] synonym: "temporal groove" EXACT [TAO:0001753] xref: ZFA:0005628 @@ -375525,6 +396645,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001768 name: retractor tentaculi def: "Bilaterally paired dorsal hyoid arch muscle that retracts the maxillary barbel." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002376 ! cranial muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -375642,6 +396764,8 @@ id: UBERON:2001783 name: supraoccipital crest def: "Process that is part of the supraoccipital. It is a posteriorly directed and unpaired median projection off the posterior margin of the supraoccipital bone." [TAO:GA_TG] comment: The supraoccipital crest may be small and restricted to the dorsal part of the supraoccipital, or may be large and long and extending ventrally to the dorsal margin of the foramen magnum. The supraoccipital crest may be a large process extending above the skull roof in some teleostean subgroups. +subset: human_subset +subset: mouse_subset synonym: "supraoccipital process" EXACT [TAO:0001783] synonym: "supraoccipital spine" EXACT [TAO:0001783] is_a: UBERON:4100000 ! skeletal element projection @@ -375715,6 +396839,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001792 name: pharyngobranchial 3 bone uncinate process def: "Bony projection that is part of the pharyngobranchial 3." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001252 ! pharyngobranchial 3 bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -375723,6 +396849,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001793 name: pharyngobranchial 4 bone uncinate process def: "Bony projection that is part of the pharyngobranchial 4." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "infrapharyngobranchial 4 bone uncinate process" EXACT [TAO:0001793] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001636 ! pharyngobranchial 4 bone @@ -375732,6 +396860,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001794 name: orbitosphenoid-prootic joint def: "Joint that articulates orbitosphenoid and prootic bones. Orbitosphenoid-prootic joint is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005480 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -375745,6 +396875,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001795 name: ceratohyal foramen def: "Foramen in the anterior ceratohyal for passage of the hyoidean artery." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "bericiform foramen" EXACT [TAO:0001795] synonym: "beryciform foramen" EXACT [TAO:0001795] is_a: UBERON:0005744 ! bone foramen @@ -375754,6 +396886,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001796 name: epibranchial 2 bone uncinate process def: "Epibranchial uncinate process that is part of epibranchial 2 bone." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001382 ! epibranchial bone uncinate process relationship: part_of UBERON:2001246 ! epibranchial 2 bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -375762,6 +396896,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001797 name: epibranchial 1 bone uncinate process def: "Epibranchial uncinate process that is part of epibranchial 1 bone." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001382 ! epibranchial bone uncinate process relationship: part_of UBERON:2001243 ! epibranchial 1 bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -375770,6 +396906,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001798 name: epicentral bone def: "Intermuscular bone that articulates with the vertebral centrum." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "diépipleural" EXACT [PSPUB:0000131] synonym: "neoneural" EXACT [PSPUB:0000165, PSPUB:0000166] is_a: UBERON:2000526 ! intermuscular bone @@ -375779,6 +396917,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001799 name: recessus lateralis def: "Intracranial space formed by confluence of supraorbital, infraorbital, preopercular and temporal sensory canals. See also Di Dario (2004)." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005493 is_a: UBERON:0000464 ! anatomical space property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -375787,6 +396927,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001800 name: cephalic rib def: "Modified epicentral intermuscular bone that connects the back of the skull with the pectoral girdle." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001798 ! epicentral bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -375820,6 +396962,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001804 name: olfactory nerve foramen def: "Foramen for the passage of the olfactory nerve or cranial nerve 1." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005429 is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -375829,6 +396973,8 @@ id: UBERON:2001805 name: articular bone def: "Endochondral bone that is located posterior to the dentary, medial to the angular and antero-dorsal to the retroarticular forming the lower jaw. The articular bears a dorso-posterior articular facet for the condyle of the quadrate. The articular is a paired bone." [TAO:wd] comment: The articular fuses with the angular bone in clupeocephalans forming the anguloarticular. +subset: human_subset +subset: mouse_subset synonym: "articular" EXACT [TAO:0001805] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004768 ! bone of lower jaw @@ -375850,6 +396996,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001807 name: preepiotic fossa def: "Fossa that is a concavity on the dorsolateral surface of the skull roof found at least partially on the epiotic (epioccipital)." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "preepioccipital fossa" EXACT [TAO:0001807] is_a: UBERON:0004704 ! bone fossa property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -375859,6 +397007,8 @@ id: UBERON:2001808 name: facial foramen def: "Foramen through which cranial nerve VII (facial) exits." [TAO:wd] comment: This is the anterior opening of the trigeminofacialis (or trigeminal-facialis) chamber. +subset: human_subset +subset: mouse_subset synonym: "anterior opening trigeminofacialis chamber" EXACT [TAO:0001808] is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -375868,6 +397018,8 @@ id: UBERON:2001809 name: trigeminal foramen def: "Foramen through which cranial nerve V (trigeminal) exits." [TAO:wd] comment: This is the posterior opening of trigeminofacialis (or trigeminal-facialis) chamber. +subset: human_subset +subset: mouse_subset synonym: "posterior opening of trigeminofacialis chamber" EXACT [TAO:0001809] is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -375930,6 +397082,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001815 name: nuchal plate def: "Dermal bone that is a bony expansion in the integument anterior to or flanking the dorsal fin that is part of and at the distal end of a supraneural or dorsal fin proximal radial." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:2002063 ! nuchal plate series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -375938,6 +397092,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001816 name: anterior nuchal plate def: "Nuchal plate that is unpaired and part of the supraneural and in contact, or not, with the supraoccipital crest anteriorly and middle nuchal plate posteriorly." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "first nuchal plate" EXACT [TAO:0001816] is_a: UBERON:2001815 ! nuchal plate relationship: part_of UBERON:2000442 ! supraneural bone @@ -376008,6 +397164,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001822 name: epibranchial 3 bone uncinate process def: "Epibranchial uncinate process that is part of epibranchial 3 bone." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001382 ! epibranchial bone uncinate process relationship: part_of UBERON:2001247 ! epibranchial 3 bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376016,6 +397174,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001823 name: epibranchial 4 bone uncinate process def: "Epibranchial uncinate process that is part of epibranchial 4 bone." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001382 ! epibranchial bone uncinate process relationship: part_of UBERON:2001245 ! epibranchial 4 bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376056,6 +397216,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001827 name: premaxillary-maxillary ligament def: "Ligament that connects the premaxilla to the maxilla." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005265 is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376065,6 +397227,8 @@ id: UBERON:2001828 name: primordial ligament def: "Ligament that connects the maxilla with the lower jaw." [TAO:wd] comment: Synonym articular-maxillary ligament (Alexander 1964). +subset: human_subset +subset: mouse_subset synonym: "articular-maxillary ligament" EXACT [TAO:0001828] synonym: "ligamentum primordiale" EXACT [TAO:0001828] synonym: "maxillo-mandibular ligament" EXACT [TAO:0001828] @@ -376101,6 +397265,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001831 name: pterosphenoid-orbitosphenoid joint def: "Joint that articulates the pterosphenoid and orbitosphenoid. Pterosphenoid-orbitosphenoid joint is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005483 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -376114,6 +397280,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001832 name: parasphenoid-basioccipital joint def: "Joint that articulates the parasphenoid and basioccipital. Parasphenoid-basioccipital joint is unpaired." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005560 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -376127,6 +397295,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001833 name: premaxillary tooth row def: "Tooth row that is on the premaxilla." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0009678 ! tooth row relationship: composed_primarily_of UBERON:2001626 ! premaxillary tooth property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376135,6 +397305,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001840 name: tip def: "Anatomical point that is the apex of a projection or anything long and tapered; can be bony or cartilage." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "tips" EXACT OMO:0003004 [TAO:0001840] is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0004529 ! anatomical projection @@ -376145,6 +397317,8 @@ id: UBERON:2001841 name: interhyal-epihyal joint def: "Joint that articulates the interhyal and epihyal bones, or interhyal and ceratohyal cartilages. Interhyal-epihyal joint is paired." [TAO:wd] comment: Logical definition to be added after generic element classes added to group/bone cartilage +subset: human_subset +subset: mouse_subset xref: ZFA:0005473 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376153,6 +397327,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001842 name: epihyal-ceratohyal joint def: "Joint that articulates the epihyal and ceratohyal bones. Epihyal-ceratohyal joint is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005497 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -376246,6 +397422,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001849 name: epihyal-branchiostegal ray joint def: "Joint that articulates the epihyal and branchiostegal ray bones. Epihyal-branchiostegal ray joint is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005498 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376254,6 +397432,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001850 name: ceratohyal-branchiostegal ray joint def: "Joint that articulates the ceratohyal and branchiostegal ray bones. Ceratohyal-branchiostegal ray joint is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005465 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376262,6 +397442,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001852 name: postcleithrum 1 def: "Postcleithrum that anteriorly articulates with the supracleithrum and/or the cleithrum of the pectoral girdle; most dorsal element in a series of postcleithra." [TAO:GA_TG, TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2000410 ! postcleithrum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376269,6 +397451,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001853 name: postcleithrum 2 def: "Postcleithrum that articulates dorsally with postcleithrum 1, ventrally with postcleithrum 3, and anteriorly with cleithrum." [TAO:GA_TG, TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2000410 ! postcleithrum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376276,6 +397460,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001854 name: postcleithrum 3 def: "Postcleithrum that articulates dorsally with postcleithrum 2 and, sometimes, anteriorly with cleithrum." [TAO:GA_TG, TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2000410 ! postcleithrum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376283,6 +397469,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001855 name: hyomandibular condyle for the opercle def: "Process on the dorso-posterior margin of the hyomandibula cartilage or bone that articulates with a depression on the antero-dorsal margin of the opercle." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "opercular process of hyomandibular" EXACT [TAO:0001855] is_a: UBERON:0009979 ! condyle relationship: part_of UBERON:0011607 ! hyomandibular cartilage @@ -376293,6 +397481,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001856 name: gill ray def: "Gill ray is a slender, usually rod-like cartilage within a gill filament and ligamentously tied to its associated pharyngeal arch bone or cartilage." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005390 is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton @@ -376313,6 +397503,8 @@ id: UBERON:2001858 name: suprapharyngobranchial def: "A pharyngobranchial bone that articulates with the neurocranium dorsally and epibranchial 1 and pharyngobranchial 2 ventrally; lies dorsal to other elements of the dorsal portions of the branchial arches." [TAO:wd] comment: Articulates with the exoccipital or prootic depending on taxon. +subset: human_subset +subset: mouse_subset synonym: "branchial spiracle" EXACT [TAO:0001858] is_a: UBERON:2000527 ! pharyngobranchial bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376321,6 +397513,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001859 name: pharyngobranchial 1 tooth plate def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 1 bone." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "pharyngobranchial 1 toothplate" EXACT [TAO:0001859] is_a: UBERON:2002015 ! pharyngobranchial tooth plate relationship: part_of UBERON:2001228 ! pharyngeal arch 3 skeleton @@ -376330,6 +397524,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001860 name: epibranchial 4-upper pharyngeal toothplate joint def: "Joint that articulates the epibranchial 4 cartilage or bone and upper pharyngeal toothplate. Epibranchial 4-upper pharyngeal toothplate joint is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376337,6 +397533,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001861 name: epibranchial 3-pharyngobranchial 3 joint def: "Joint that articulates the epibranchial 3 cartilage or bone and pharyngobranchial 3 cartilage or bone. Epibranchial 3-pharyngobranchial 3 joint is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: connects UBERON:2001247 ! epibranchial 3 bone @@ -376353,6 +397551,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001862 name: epibranchial 3-pharyngobranchial 4 joint def: "Joint that articulates the epibranchial 3 cartilage or bone and pharyngobranchial 4 cartilage or bone. Epibranchial 3-pharyngobranchial 4 joint is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376360,6 +397560,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001863 name: inter-hypobranchial 3 joint def: "Joint that articulates the left and right hypobranchial 3 cartilages or bones. Inter-hypobranchial 3 joint is unpaired." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005474 is_a: UBERON:0000982 ! skeletal joint property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376368,6 +397570,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001864 name: basibranchial 1 cartilage def: "Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 1 (pharyngeal arch 3)." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0013747 ! basibranchial cartilage is_a: UBERON:2001915 ! basibranchial 1 element intersection_of: UBERON:2001915 ! basibranchial 1 element @@ -376380,6 +397584,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001865 name: basibranchial 4 cartilage def: "Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 4 (pharyngeal arch 6)." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0013747 ! basibranchial cartilage is_a: UBERON:2001918 ! basibranchial 4 element intersection_of: UBERON:2001918 ! basibranchial 4 element @@ -376392,6 +397598,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001866 name: basibranchial 5 cartilage def: "Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 5 (pharyngeal arch 7)." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0013747 ! basibranchial cartilage is_a: UBERON:2001919 ! basibranchial 5 element intersection_of: UBERON:2001919 ! basibranchial 5 element @@ -376404,6 +397612,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001867 name: post-ceratobranchial cartilage def: "Pharyngeal arch cartilage that is ventral, median, and at or posterior to the juncture of the bilaterally paired ceratobranchial 5 cartilage or bone." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "basibranchial 6" EXACT [TAO:0001867] synonym: "copula 4" EXACT [TAO:0001867] synonym: "pericardial cartilage" EXACT [TAO:0001867] @@ -376415,6 +397625,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001869 name: supraneural 2 cartilage def: "Postcranial axial cartilage located dorsal to vertebra 2." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:4300036 ! supraneural cartilage is_a: UBERON:4300214 ! supraneural 2 element intersection_of: UBERON:4300214 ! supraneural 2 element @@ -376426,6 +397638,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001870 name: supraneural 3 cartilage def: "Postcranial axial cartilage located dorsal to vertebrae 3 and 4." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:4300036 ! supraneural cartilage is_a: UBERON:4300215 ! supraneural 3 element intersection_of: UBERON:4300215 ! supraneural 3 element @@ -376461,6 +397675,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001874 name: basibranchial 2 cartilage def: "Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 2 (pharyngeal arch 4)." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0013747 ! basibranchial cartilage is_a: UBERON:2001916 ! basibranchial 2 element intersection_of: UBERON:2001916 ! basibranchial 2 element @@ -376472,6 +397688,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001875 name: opercular series +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376479,6 +397697,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001876 name: basibranchial 3 cartilage def: "Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 3 (pharyngeal arch 5)." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0013747 ! basibranchial cartilage is_a: UBERON:2001917 ! basibranchial 3 element intersection_of: UBERON:2001917 ! basibranchial 3 element @@ -376491,6 +397711,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001877 name: neural arch 1 def: "Neural arch that is the anteriormost neural arch." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003861 ! neural arch property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376498,6 +397720,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001878 name: rib of vertebra 2 def: "Rib that articulates with the parapophysis of the second centrum." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005539 is_a: UBERON:0002228 ! rib property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376506,6 +397730,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001879 name: rib of vertebra 1 def: "Rib that articulates with the parapophysis of the first centrum." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005538 is_a: UBERON:0002228 ! rib property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376514,6 +397740,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001880 name: rib of vertebra 3 def: "Rib that articulates with the parapophysis of the third centrum." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005540 is_a: UBERON:0002228 ! rib property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376522,6 +397750,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001881 name: rib of vertebra 4 def: "Rib that articulates with the parapophysis of the fourth centrum." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005541 is_a: UBERON:0002228 ! rib property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376529,6 +397759,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001882 name: parapophysis + rib of vertebra 3 +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:2001169 ! vertebral element 3 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376536,6 +397768,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001883 name: parapophysis + rib of vertebra 3 + rib of vertebra 4 +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:2001169 ! vertebral element 3 relationship: part_of UBERON:2001170 ! vertebral element 4 @@ -376546,6 +397780,8 @@ id: UBERON:2001884 name: accessory neural arch def: "Neural arch that is located posterior to the neurocranium and anterior to neural arch 1. The accessory neural arch is not associated with a vertebral centrum." [TAO:wd] comment: Definition from de Pinna and Grande (2003). +subset: human_subset +subset: mouse_subset is_a: UBERON:0003861 ! neural arch property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376553,6 +397789,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001885 name: neural spine 1 def: "Neural spine that is associated with the first vertebra." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001076 ! neural spine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376560,6 +397798,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001886 name: neural spine 2 def: "Neural spine that is associated with the second vertebra." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001076 ! neural spine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376567,6 +397807,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001887 name: neural spine 3 def: "Neural spine that is associated with the third vertebra." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001076 ! neural spine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376574,6 +397816,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001888 name: supraneural 1 bone def: "Supraneural bone located dorsal to vertebra 1." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000442 ! supraneural bone is_a: UBERON:4300213 ! supraneural 1 element @@ -376587,6 +397831,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001889 name: supraneural 1 cartilage def: "Postcranial axial cartilage located dorsal to vertebra 1." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:4300036 ! supraneural cartilage is_a: UBERON:4300213 ! supraneural 1 element intersection_of: UBERON:4300213 ! supraneural 1 element @@ -376598,6 +397844,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001892 name: interhyal element def: "Skeletal element that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "stylohyal" RELATED [] synonym: "stylohyal element" EXACT [] is_a: UBERON:0010363 ! endochondral element @@ -376608,6 +397856,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001893 name: hypobranchial element def: "Skeletal element that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial element." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376616,6 +397866,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001894 name: hypobranchial 1 element def: "Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 1 element laterally." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001893 ! hypobranchial element relationship: part_of UBERON:2001228 ! pharyngeal arch 3 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376624,6 +397876,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001895 name: hypobranchial 2 element def: "Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 2 element laterally." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001893 ! hypobranchial element relationship: part_of UBERON:2001231 ! pharyngeal arch 4 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376632,6 +397886,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001896 name: hypobranchial 3 element def: "Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 3 element laterally." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001893 ! hypobranchial element relationship: part_of UBERON:2001232 ! pharyngeal arch 5 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376640,6 +397896,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001897 name: hypobranchial 4 element def: "Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 4 element laterally." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001893 ! hypobranchial element relationship: part_of UBERON:2001230 ! pharyngeal arch 6 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376648,6 +397906,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001898 name: ceratobranchial element def: "Skeletal element that is bilaterally paired and forms part of the ventral branchial arches." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:2002103 ! ceratobranchial series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376655,6 +397915,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001899 name: ceratobranchial 1 element +subset: human_subset +subset: mouse_subset is_a: UBERON:2001898 ! ceratobranchial element relationship: part_of UBERON:2001228 ! pharyngeal arch 3 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376662,6 +397924,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001900 name: ceratobranchial 2 element +subset: human_subset +subset: mouse_subset is_a: UBERON:2001898 ! ceratobranchial element relationship: part_of UBERON:2001231 ! pharyngeal arch 4 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376669,6 +397933,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001901 name: ceratobranchial 3 element +subset: human_subset +subset: mouse_subset is_a: UBERON:2001898 ! ceratobranchial element relationship: part_of UBERON:2001232 ! pharyngeal arch 5 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376676,6 +397942,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001902 name: ceratobranchial 4 element +subset: human_subset +subset: mouse_subset is_a: UBERON:2001898 ! ceratobranchial element relationship: part_of UBERON:2001230 ! pharyngeal arch 6 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376683,6 +397951,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001903 name: ceratobranchial 5 element +subset: human_subset +subset: mouse_subset is_a: UBERON:2001898 ! ceratobranchial element relationship: part_of UBERON:2001229 ! pharyngeal arch 7 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376691,6 +397961,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001904 name: epibranchial element def: "Skeletal element that is bilaterally paired and articulates laterally with ceratobranchial element." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "epibranchial elements" EXACT OMO:0003004 [TAO:0001904] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:2002102 ! epibranchial series @@ -376699,6 +397971,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001905 name: epibranchial 1 element +subset: human_subset +subset: mouse_subset is_a: UBERON:2001904 ! epibranchial element relationship: part_of UBERON:2001228 ! pharyngeal arch 3 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376706,6 +397980,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001906 name: epibranchial 2 element +subset: human_subset +subset: mouse_subset is_a: UBERON:2001904 ! epibranchial element relationship: part_of UBERON:2001231 ! pharyngeal arch 4 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376713,6 +397989,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001907 name: epibranchial 3 element +subset: human_subset +subset: mouse_subset is_a: UBERON:2001904 ! epibranchial element relationship: part_of UBERON:2001232 ! pharyngeal arch 5 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376720,6 +397998,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001908 name: epibranchial 4 element +subset: human_subset +subset: mouse_subset is_a: UBERON:2001904 ! epibranchial element relationship: part_of UBERON:2001230 ! pharyngeal arch 6 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376728,6 +398008,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001909 name: pharyngobranchial element def: "Skeletal element of the branchial arches located medial to the epibranchials." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "infrapharyngobranchial element" EXACT [] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton @@ -376737,6 +398019,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001910 name: pharyngobranchial 1 element def: "Most anterior pharyngobranchial element, located medial to the epibranchials." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "infrapharyngobranchial 1 element" EXACT [] is_a: UBERON:2001909 ! pharyngobranchial element relationship: part_of UBERON:2001228 ! pharyngeal arch 3 skeleton @@ -376746,6 +398030,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001911 name: pharyngobranchial 2 element def: "Pharyngobranchial element, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 1 element." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "infrapharyngobranchial 2 element" EXACT [] is_a: UBERON:2001909 ! pharyngobranchial element relationship: part_of UBERON:2001231 ! pharyngeal arch 4 skeleton @@ -376755,6 +398041,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001912 name: pharyngobranchial 3 element def: "Pharyngobranchial element, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 2 element." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "infrapharyngobranchial 3 element" EXACT [] is_a: UBERON:2001909 ! pharyngobranchial element relationship: part_of UBERON:2001232 ! pharyngeal arch 5 skeleton @@ -376764,6 +398052,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001913 name: pharyngobranchial 4 element def: "Most posterior pharyngobranchial element, located medial to the epibranchials." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "infrapharyngobranchial 4 element" EXACT [] synonym: "infrapharyngobranchial 4 element" RELATED [TAO:0001913] is_a: UBERON:2001909 ! pharyngobranchial element @@ -376782,6 +398072,8 @@ replaced_by: UBERON:0004740 id: UBERON:2001915 name: basibranchial 1 element def: "Skeletal element that is median and associated with branchial arch 1." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0013746 ! basibranchial element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376789,6 +398081,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001916 name: basibranchial 2 element def: "Skeletal element that is median and associated with branchial arch 2." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0013746 ! basibranchial element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376796,6 +398090,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001917 name: basibranchial 3 element def: "Skeletal element that is median and associated with branchial arch 3." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0013746 ! basibranchial element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376803,6 +398099,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001918 name: basibranchial 4 element def: "Skeletal element that is median and associated with branchial arch 4." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0013746 ! basibranchial element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376810,6 +398108,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001919 name: basibranchial 5 element def: "Skeletal element that is median and associated with branchial arch 5." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0013746 ! basibranchial element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376817,6 +398117,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001920 name: pseudotympanum def: "Anatomical structure that is formed as a hiatus in the muscles covering the anterior chamber of the swim bladder in the area of ribs 5 and 6." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "humeral hiatus" EXACT [TAO:0001920] is_a: UBERON:0000481 ! multi-tissue structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376834,6 +398136,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001922 name: inter-frontal joint def: "Joint between the left and right frontal bone." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "interfrontal suture" EXACT [ZFIN:ZDB-PUB-060323-12] synonym: "metopic suture" RELATED [ZFIN:ZDB-PUB-060323-12] xref: ZFA:0005472 @@ -376844,6 +398148,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001923 name: aortic canal def: "Canal that houses the dorsal aorta." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376851,6 +398157,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001924 name: occipital artery foramen def: "Foramina that allow passage of occipital arteries." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376858,6 +398166,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001925 name: spiracular canal def: "Foramen for passage of nerve supplying otic lateral line." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376865,6 +398175,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001926 name: posterior myodome def: "Fossa or chamber on posterior portion of orbital region of neurocranium that serves as attachment site for posterior extrinsic eye muscles." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004704 ! bone fossa property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376872,6 +398184,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001927 name: anterior myodome def: "Fossa or chamber on anterior portion of orbital region of neurocranium that serves as attachment site for anterior extrinsic eye musculature." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005406 is_a: UBERON:0004704 ! bone fossa property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376880,6 +398194,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001928 name: articular fossa of opercle def: "Fossa of opercle that articulates with hyomandibular condyle for opercle." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005442 is_a: UBERON:0004704 ! bone fossa property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376888,6 +398204,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001929 name: epioccipital posterior process def: "Process of the epioccipital that extends posteriorly, is laminar in form and is usually attached to Weberian apparatus." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:2001412 ! epiotic @@ -376898,6 +398216,8 @@ id: UBERON:2001930 name: accessory vomerine tooth plate def: "Dermal bone that is located lateral to vomer off midline of palate. Accessory vomerine tooth plate bears teeth and may be present as one or more pairs." [TAO:wd] comment: Accessory vomerine tooth plate is not synonymous with dermopalatine tooth plate, palatine tooth plate, or pterygoid tooth plate. +subset: human_subset +subset: mouse_subset is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0003112 ! olfactory region @@ -376933,6 +398253,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001934 name: rostral plate def: "Dermal bone that is located on midline of snout in skin above mesethmoid and lateral ethmoid bones. Rostral plate bears type 1 odontodes and is unpaired." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0003112 ! olfactory region @@ -376943,6 +398265,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001935 name: oral disk def: "Lip that is expanded to form a broad, rounded cup around the mouth." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001833 ! lip property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376950,6 +398274,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001936 name: posterior nasal barbel def: "Barbel that is attached to the anterior rim of the posterior nostril. Posterior nasal barbel is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:4300287 ! nasal barbel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376957,6 +398283,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001937 name: anterior nasal barbel def: "Barbel that is associated with the anterior nostril. Anterior nasal barbel is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005407 is_a: UBERON:4300287 ! nasal barbel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376965,6 +398293,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001938 name: maxillary barbel def: "Barbel that is attached to the distal end of the maxilla and that originates on the side of the mouth. Maxillary barbel is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005408 is_a: UBERON:2000622 ! barbel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -376973,6 +398303,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001939 name: inter-basipterygium joint def: "Joint that articulates the left and right basipterygium cartilage or bone. Inter-basipterygium joint is unpaired." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "pelvic girdle symphysis" EXACT [TAO:0001939] synonym: "pelvic symphysis" EXACT [TAO:0001939] xref: ZFA:0005471 @@ -376986,6 +398318,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001940 name: vertebra 4-vertebra 5 joint def: "Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 4 and vertebra 5." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005504 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -377025,6 +398359,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001943 name: metapterygoid-autopalatine ligament def: "Ligament that connects the metapterygoid to the autopalatine." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377032,6 +398368,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001944 name: lateral ethmoid-autopalatine ligament def: "Lateral ethmoid-autopalatine ligament is a ligament that connects the lateral ethmoid to the autopalatine." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005502 is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377040,6 +398378,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001945 name: mesethmoid-premaxillary ligament def: "Mesethmoid-premaxillary ligament is a ligament that connects the mesethmoid to the premaxilla." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377047,6 +398387,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001946 name: mesethmoid-maxillary ligament def: "Mesethmoid-maxillary ligament is a ligament that connects the mesethmoid to the maxilla." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377054,6 +398396,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001947 name: hyomandibular-otic region joint def: "Joint that articulates the hyomandibular cartilage or bone and otic region cartilage or sphenotic bone, and often pterotic bone and prootic bone. Hyomandibular-otic region joint is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005544 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -377086,6 +398430,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001950 name: inter-premaxillary joint def: "Joint that articulates the left and right premaxillary bones. Inter-premaxillary joint is unpaired." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005475 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -377097,6 +398443,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001951 name: skin flap def: "Surface structure that is a portion of skin that projects or hangs from the body." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005495 is_a: UBERON:3000961 ! external integument structure relationship: part_of UBERON:0002199 ! integument @@ -377106,6 +398454,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001952 name: dentary tooth row def: "Tooth row that is on the dentary." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0009678 ! tooth row relationship: has_member UBERON:0011594 ! dentary tooth property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377128,6 +398478,8 @@ is_obsolete: true id: UBERON:2001956 name: epibranchial 1 bone proximal cartilage def: "Pharyngeal cartilage that is part of and at the proximal end of epibranchial 1 bone, and that usually articulates with a pharyngobranchial element. Epibranchial 1 bone proximal cartilage is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "epibranchial 1 anterior cartilage" EXACT [TAO:0001956] synonym: "epibranchial 1 mesial cartilage" EXACT [TAO:0001956] is_a: UBERON:0011004 ! pharyngeal arch cartilage @@ -377139,6 +398491,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001957 name: epibranchial 2 bone proximal cartilage def: "Pharyngeal cartilage that is part of and at the proximal end of epibranchial 2 bone, and that usually articulates with a pharyngobranchial element. Epibranchial 2 bone proximal cartilage is paired." [TAO:w] +subset: human_subset +subset: mouse_subset synonym: "epibranchial 2 anterior cartilage" EXACT [TAO:0001957] synonym: "epibranchial 2 mesial cartilage" EXACT [TAO:0001957] is_a: UBERON:0011004 ! pharyngeal arch cartilage @@ -377150,6 +398504,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001958 name: ceratobranchial 3 bone distal cartilage def: "Pharynbeal cartilage that is part of and at the distal end of ceratobranchial 3 bone, and that usually articulates with epibranchial 3 element. Ceratobranchial 3 bone distal cartilage is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "ceratobranchial 3 bone lateral cartilage" EXACT [TAO:0001958] synonym: "ceratobranchial 3 bone posterior cartilage" EXACT [TAO:0001958] is_a: UBERON:0011004 ! pharyngeal arch cartilage @@ -377162,6 +398518,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001959 name: ceratobranchial 4 bone proximal cartilage def: "Pharyngeal cartilage that is part of and at the proximal end of ceratobranchial 4 bone, and that usually articulates with basibranchial 4 element. Ceratobranchial 4 proximal cartilage is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "ceratobranchial 4 bone anterior cartilage" EXACT [TAO:0001959] synonym: "ceratobranchial 4 bone mesial cartilage" EXACT [TAO:0001959] is_a: UBERON:0011004 ! pharyngeal arch cartilage @@ -377174,6 +398532,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001960 name: ceratobranchial 4 bone distal cartilage def: "Pharyngeal cartilage that is part of and at the distal end of ceratobranchial 4 bone, and that usually articulates with epibranchial 4 element. Ceratobranchial 4 distal cartilage is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "ceratobranchial 4 bone lateral cartilage" EXACT [TAO:0001960] synonym: "ceratobranchial 4 bone posterior cartilage" EXACT [TAO:0001960] is_a: UBERON:0011004 ! pharyngeal arch cartilage @@ -377186,6 +398546,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001961 name: ceratobranchial 5 bone distal cartilage def: "Pharyngeal cartilage that is part of and at the distal end of ceratobranchial 5 bone. Ceratobranchial 5 bone distal cartilage is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "ceratobranchial 5 bone lateral cartilage" EXACT [TAO:0001961] synonym: "ceratobranchial 5 bone posterior cartilage" EXACT [TAO:0001961] is_a: UBERON:0011004 ! pharyngeal arch cartilage @@ -377198,6 +398560,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001962 name: hypobranchial 1 bone distal cartilage def: "Pharyngeal cartilage that is part of and at the distal end of hypobranchial 1 bone, and that usually articulates with ceratobranchial 1 element. Hypobranchial 1 bone distal cartilage is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "hypobranchial 1 bone lateral cartilage" EXACT [TAO:0001962] synonym: "hypobranchial 1 bone posterior cartilage" EXACT [TAO:0001962] is_a: UBERON:0011004 ! pharyngeal arch cartilage @@ -377209,6 +398573,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001963 name: hypobranchial 2 bone distal cartilage def: "Pharyngeal cartilage that is part of and at the distal end of hypobranchial 2 bone, and that usually articulates with ceratobranchial 2 element. Hypobranchial 2 bone distal cartilage is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "hypobranchial 2 bone lateral cartilage" EXACT [TAO:0001963] synonym: "hypobranchial 2 bone posterior cartilage" EXACT [TAO:0001963] is_a: UBERON:0011004 ! pharyngeal arch cartilage @@ -377220,6 +398586,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001964 name: epibranchial 3 bone uncinate process cartilage def: "Pharyngeal cartilage that is part of and at the distal end of epibranchial bone 3 uncinate process. epibranchial bone 3 uncinate process cartilage is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:2001822 ! epibranchial 3 bone uncinate process property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377228,6 +398596,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001965 name: epibranchial 4 bone uncinate process cartilage def: "Pharyngeal cartilage that is part of and at the distal end of epibranchial bone 4 uncinate process. Epibranchial bone 4 uncinate process cartilage is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:2001823 ! epibranchial 4 bone uncinate process property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377235,6 +398605,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001966 name: epibranchial 5 element +subset: human_subset +subset: mouse_subset is_a: UBERON:2001904 ! epibranchial element relationship: part_of UBERON:2001229 ! pharyngeal arch 7 skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377250,6 +398622,8 @@ consider: ZFA:0005558 id: UBERON:2001968 name: outer mental barbel def: "Mental barbel that originates on the chin, in a posterolateral position relative to the inner mental barbel." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2002024 ! mental barbel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377257,6 +398631,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001969 name: inner mental barbel def: "Mental barbel that originates on the chin, in an anteromedial position relative to the outer mental barbel. The inner mental barbel is nearer to the mandibular symphysis than is the outer mental barbel." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005508 is_a: UBERON:2002024 ! mental barbel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377265,6 +398641,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001971 name: parapophysis 4 def: "Parapophysis that is the lateral projection from the fourth centrum. Parapophysis 4 is bilaterally paired." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003109 ! parapophysis relationship: part_of UBERON:2001170 ! vertebral element 4 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377273,6 +398651,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001972 name: intercostal ligament def: "Ligament that connects one rib to another." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005637 is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377280,6 +398660,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001974 name: subtemporal fossa +subset: human_subset +subset: mouse_subset xref: ZFA:0005454 is_a: UBERON:0004704 ! bone fossa property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377287,6 +398669,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001975 name: suprabranchial artery +subset: human_subset +subset: mouse_subset is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377294,6 +398678,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001976 name: interorbital septum def: "Anatomical cluster composed of one or more bones and tissue that separates the orbits." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0000033 ! head property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377302,6 +398688,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001977 name: pad def: "Surface structure that is a portion of the integument thickened relative to surrounding area." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "pads" EXACT OMO:0003004 [TAO:0001977] xref: MESH:D058729 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:3000961 ! external integument structure @@ -377312,6 +398700,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001978 name: maxillary tooth row def: "Tooth row that is on the maxilla." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0009678 ! tooth row relationship: composed_primarily_of UBERON:0011593 ! maxillary tooth property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377333,6 +398723,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001980 name: vertebral element 6 def: "Vertebra that is posteriorly adjacent to vertebra 5." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005348 is_a: UBERON:0010913 ! vertebral element relationship: overlaps UBERON:2002054 ! vertebra 5-vertebra 6 joint @@ -377344,6 +398736,8 @@ property_value: vertebra_number "6" xsd:nonNegativeInteger id: UBERON:2001981 name: vertebral element 7 def: "Vertebra that is posteriorly adjacent to vertebra 6." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005349 is_a: UBERON:0010913 ! vertebral element relationship: overlaps UBERON:2002055 ! vertebra 6 - vertebra 7 joint @@ -377354,6 +398748,8 @@ property_value: vertebra_number "7" xsd:nonNegativeInteger id: UBERON:2001982 name: vertebral element 8 def: "Vertebra that is posteriorly adjacent to vertebra 7." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005350 is_a: UBERON:0010913 ! vertebral element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377363,6 +398759,8 @@ property_value: vertebra_number "8" xsd:nonNegativeInteger id: UBERON:2001983 name: centrum 1 def: "Centrum that is part of vertebra 1." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum relationship: part_of UBERON:0001092 ! vertebral bone 1 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377371,6 +398769,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001984 name: centrum 2 def: "Centrum that is part of vertebra 2." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum relationship: part_of UBERON:0001093 ! vertebral bone 2 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377379,6 +398779,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001985 name: centrum 3 def: "Centrum that is part of vertebra 3." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum relationship: part_of UBERON:2001169 ! vertebral element 3 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377387,6 +398789,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001986 name: centrum 4 def: "Centrum that is part of vertebra 4." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum relationship: part_of UBERON:2001170 ! vertebral element 4 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377395,6 +398799,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001987 name: centrum 5 def: "Centrum that is part of vertebra 5." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum relationship: part_of UBERON:2001732 ! vertebral element 5 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377403,6 +398809,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001988 name: centrum 6 def: "Centrum that is part of vertebra 6." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum relationship: part_of UBERON:2001980 ! vertebral element 6 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377412,6 +398820,8 @@ id: UBERON:2001989 name: mandibular-hyoid median cartilage def: "Pharyngeal arch cartilage that is a spherical mass of cartilage located between the mandibular symphysis and ventral hyoid arch. Mandibular-hyoid median cartilage is unpaired." [TAO:wd] comment: Schaefer, S. 1990. (Anatomy and relationships of the scoloplacid catfishes. Proc. Acad. Nat. Sci. Phil. 142: 167-210) described this structure in certain catfishes and applied the name hyomandibular cartilage. To avoid possible confusion of this structure with the hyomandibular cartilage (or bone) of the suspensorium, the term mandibular-hyoid median cartilage is used here. +subset: human_subset +subset: mouse_subset synonym: "hyomandibular cartilage sensu Schaefer (1990)" EXACT [TAO:0001989] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:0005884 ! hyoid arch skeleton @@ -377422,6 +398832,8 @@ id: UBERON:2001990 name: epibranchial arborescent organ def: "Anatomical cluster that is an outgrowth of the soft tissue around the dorsolateral corner of a branchial arch that is internally supported by a core of rigid cartilage-like tissue. Epibranchial arborescent organ is paired." [TAO:wd] comment: Greenwood, P. H. 1961 (A revision of the genus Dinotopterus Blgr. (pisces, Clariidae) with notes on the comparative anatomy of the suprabranchial organs in the Clariidae. Bull. British Mus (Nat. His.), Zool. 7(4): 217-241.) described this structure in certain catfishes and applied the term suprabranchial organ to it. To avoid possible confusion with distinctly different structures bearing the name suprabranchial organs in other teleosts, the term epibranchial arborescent organ is used here following the lead of de Pinna 1993. +subset: human_subset +subset: mouse_subset synonym: "suprabranchial organ" EXACT [TAO:0001990] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001042 ! chordate pharynx @@ -377431,6 +398843,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001991 name: lateral bone def: "Membrane bone extending between a transverse process of the second proximal dorsal-fin radial and the pleural rib of the sixth vertebra. Lateral bone is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0007842 ! membrane bone relationship: part_of UBERON:0002090 ! postcranial axial skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377468,6 +398882,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001995 name: papilla def: "Surface structure that is a small, fleshy protuberance." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "dermal papilla" RELATED [TAO:0001995] synonym: "papillae" EXACT OMO:0003004 [TAO:0001995] is_a: UBERON:0003102 ! surface structure @@ -377476,6 +398892,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001996 name: maxillary canal +subset: human_subset +subset: mouse_subset is_a: UBERON:0000481 ! multi-tissue structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377484,6 +398902,8 @@ id: UBERON:2001997 name: parietal-supraoccipital def: "Compound dermal and endochondral bone that results from the fusion of the paired dermal parietal bones and the median endochondral supraoccipital. Forms the dorso-posterior element of the dermatocranium." [TAO:GA_TG] comment: A parietal-supraoccipital or parieto-supraoccipital bone is an element present in Siluriformes. +subset: human_subset +subset: mouse_subset synonym: "parieto-supraoccipital" EXACT [TAO:0001997] synonym: "supraoccipital" BROAD [TAO:0001997] is_a: UBERON:0002513 ! endochondral bone @@ -377498,6 +398918,8 @@ id: UBERON:2001998 name: posttemporal-supracleithrum def: "Dermal bone that results from the fusion of the dermal posttemporal and the dermal supracleithrum. Forms the upper skeletal element of the pectoral girdle between the cleithrum and neurocranium. Posttemporal-supracleithrum is paired." [TAO:wd] comment: A posttemporo-supracleithrum is a bone present in Siluriformes. There are different opinions if this is the result of an ontogenetic or a phylogenetic fusion or the loss or one or other bone. +subset: human_subset +subset: mouse_subset synonym: "postemporo-supracleithrum" EXACT [TAO:0001998] synonym: "posttemporal" RELATED [TAO:0001998] synonym: "posttemporo-supracleithrum" EXACT [TAO:0001998] @@ -377597,6 +399019,8 @@ id: UBERON:2002005 name: canal plate def: "Dermal bone that is ventral to the preopercle and bears a portion of the preopercular sensory canal." [TAO:wd] comment: The number of canal plates present can be variable. +subset: human_subset +subset: mouse_subset is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of UBERON:0005884 ! hyoid arch skeleton @@ -377606,6 +399030,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002006 name: axillary pore def: "Pore that is located ventral to the posterior cleithral process and medial to the pectoral fin. Axillary pore is at the end of a duct from an integumentary gland." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008915 ! pore property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377613,6 +399039,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002007 name: supraneural 4 bone def: "Supraneural dorsal to neural spine 4." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000442 ! supraneural bone is_a: UBERON:4300216 ! supraneural 4 element @@ -377643,6 +399071,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002010 name: hyoideomandibular nerve def: "Nerve that is a branch of cranial nerve VII that passes through or around the suspensorium to innervate muscles and sensory organs on or near pharyngeal arch 2." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005397 is_a: UBERON:0001021 ! nerve property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377652,6 +399082,8 @@ id: UBERON:2002011 name: lateral fontanel of frontal def: "Fontanel within the frontal bone near the frontal-sphenotic joint. Lateral fontanel of frontal is paired." [TAO:wd] comment: Original reference: de Pinna MCC, Vari RP. 1995. Monophyly and phylogenetic diagnosis of the family Cetopsidae, with synonymization of the Helogenidae (Teleostei: Siluriformes). Smithsonian Contributions to Zoology 571: 1-26. +subset: human_subset +subset: mouse_subset xref: ZFA:0005537 is_a: UBERON:0002221 ! fontanelle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377660,6 +399092,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002012 name: dentary foramen def: "Foramen located on the dentary for passage of the mandibular nerve." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005427 is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull @@ -377671,6 +399105,8 @@ id: UBERON:2002013 name: ascending limb of ceratobranchial 5 bone def: "Process that is the dorsally directed portion of ceratobranchial 5 bone." [TAO:wd] comment: An ascending limb of the ceratobranchial is found in Cypriniformes. +subset: human_subset +subset: mouse_subset is_a: UBERON:0004530 ! bony projection relationship: develops_from UBERON:2002014 ! ascending limb of ceratobranchial 5 cartilage relationship: part_of UBERON:2001239 ! ceratobranchial 5 bone @@ -377681,6 +399117,8 @@ id: UBERON:2002014 name: ascending limb of ceratobranchial 5 cartilage def: "Process that is the dorsally directed portion of ceratobranchial 5 cartilage." [TAO:wd] comment: An ascending limb of the ceratobranchial is found in Cypriniformes. +subset: human_subset +subset: mouse_subset is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001521 ! ceratobranchial 5 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377689,6 +399127,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002015 name: pharyngobranchial tooth plate def: "Dermal bone of upper pharyngeal arches associated with pharyngobranchial bones or cartilages, usually bearing teeth." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "pharyngobranchial toothplate" EXACT [TAO:0002015] is_a: UBERON:2001647 ! pharyngeal tooth plate relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton @@ -377698,6 +399138,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002016 name: pharyngobranchial 4 tooth plate def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 4." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "pharyngobranchial 4 toothplate" EXACT [TAO:0002016] is_a: UBERON:2002015 ! pharyngobranchial tooth plate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377707,6 +399149,8 @@ id: UBERON:2002017 name: anterior limb of ceratobranchial 5 bone def: "Process that is the anterior and medially directed portion of ceratobranchial 5 bone part of ceratobranchial 5 bone." [TAO:wd] comment: This term applies to cypriniform fishes. +subset: human_subset +subset: mouse_subset is_a: UBERON:0004530 ! bony projection relationship: develops_from UBERON:2002018 ! anterior limb of ceratobranchial 5 cartilage relationship: part_of UBERON:2001239 ! ceratobranchial 5 bone @@ -377717,6 +399161,8 @@ id: UBERON:2002018 name: anterior limb of ceratobranchial 5 cartilage def: "Process that is the anterior and medially directed portion of ceratobranchial 5 cartilage." [TAO:wd] comment: This term applies to cypriniform fishes. +subset: human_subset +subset: mouse_subset is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001521 ! ceratobranchial 5 cartilage property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377725,6 +399171,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002019 name: pterotic-posttemporal-supracleithrum def: "Bone that is a fusion of the pterotic, posttemporal, and supracleithrum bones." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "pterotic-supracleithrum" EXACT [TAO:0002019] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007829 ! pectoral girdle bone @@ -377739,6 +399187,8 @@ id: UBERON:2002020 name: hypomaxilla def: "Dermal bone bearing teeth located between the distal end of the premaxilla and the middle of the maxilla. The hypomaxilla is a paired bone." [TAO:ga_tg] comment: Hypomaxilla is a bone restricted to some clupeiforms. See Berry (1964) for a detailed account of the distribution of the hypomaxilla within clupeiforms and specifically in Herengula. +subset: human_subset +subset: mouse_subset is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011597 ! bone of upper jaw relationship: part_of UBERON:0003113 ! dermatocranium @@ -377749,6 +399199,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002021 name: ascending process of the parasphenoid def: "Process that is the lateral projection of the parasphenoid arising and articulating with the more dorsal portions of the neurocranium, usually at the level of the prootic." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "ascending ramus of the parasphenoid" EXACT [TAO:0002021] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection @@ -377759,6 +399211,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002022 name: dermethmoid def: "Dermal bone of the dorsal surface of the olfactory region. Dermethmoid can be paired or median." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0003112 ! olfactory region @@ -377768,6 +399222,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002023 name: second preethmoid bone def: "Endochondral bone found between the preethmoid and maxilla." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0011164 ! neurocranium bone is_a: UBERON:4300286 ! second preethmoid element @@ -377778,6 +399234,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002024 name: mental barbel def: "Barbel that originates on the chin." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005433 is_a: UBERON:2000622 ! barbel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377842,6 +399300,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002031 name: orbital foramen def: "Foramen in the bone or cartilage comprising the anterior wall of the orbit, and through which passes at least the deep ophthalmic branch of cranial nerve V (trigeminal)." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005430 is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377863,6 +399323,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002033 name: prootic-pterosphenoid joint def: "Joint that articulates the prootic and pterosphenoid. prootic-pterosphenoid joint is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005482 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -377876,6 +399338,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002034 name: prootic-exoccipital joint def: "Joint that articulates the prootic and exoccipital. Prootic-exoccipital joint is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005481 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -377889,6 +399353,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002038 name: basioccipital-exoccipital joint def: "Joint that articulates the basioccipital and exoccipital. Basioccipital-exoccipital joint is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005423 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -377903,6 +399369,8 @@ id: UBERON:2002039 name: dilatator fossa def: "Fossa located on the neurocranium that is formed from portions of the sphenotic, frontal and pterotic bones." [TAO:wd] comment: Dilatator fossa is present in some characiform fishes. +subset: human_subset +subset: mouse_subset is_a: UBERON:0004704 ! bone fossa property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377910,6 +399378,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002040 name: inter-coracoid joint def: "Joint between the right and left coracoid bones of the pectoral girdle." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005470 is_a: UBERON:0008114 ! joint of girdle relationship: part_of UBERON:0007831 ! pectoral girdle skeleton @@ -377919,6 +399389,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002041 name: parapophysis 6 def: "Parapophysis that is the lateral projection from the sixth centrum." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003109 ! parapophysis relationship: part_of UBERON:2001980 ! vertebral element 6 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377927,6 +399399,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002042 name: parapophysis 5 def: "Parapophysis that is the lateral projection from the fifth centrum." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003109 ! parapophysis relationship: part_of UBERON:2001732 ! vertebral element 5 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377935,6 +399409,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002043 name: posterior limb of parapophysis 4 def: "Process that arises and projects posterolaterally from parapophysis 4. Posterior limb of parapophysis 4 is bilaterally paired." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "posterior branch of parapophysis 4" EXACT [TAO:0002043] synonym: "posterior wing of parapophysis 4" EXACT [TAO:0002043] is_a: UBERON:4100000 ! skeletal element projection @@ -377945,6 +399421,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002044 name: anterior limb of parapophysis 4 def: "Process that arises and projects anterolaterally from parapophysis 4. Anterior limb of parapophysis 4 is bilaterally paired." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "anterior branch of parapophysis 4" EXACT [TAO:0002044] synonym: "anterior wing of parapophysis 4" EXACT [TAO:0002044] synonym: "Mullerian ramus" EXACT [TAO:0002044] @@ -377983,6 +399461,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002052 name: prootic depression def: "Shallow area that exists on the prootic." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005510 is_a: UBERON:0000464 ! anatomical space property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -377991,6 +399471,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002053 name: bony plate def: "Dermal bone that is located on or subjacent to the surface anywhere on the body and that is not part of the general complement of scales, dermal bone of the dermatocranium, postcranial axial skeleton or paired fin skeleton. Bony plate may exist singly, or as unpaired or paired clusters or series." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "armor" EXACT [TAO:0002053] synonym: "armor plate" EXACT [TAO:0002053] synonym: "osteoderms" EXACT [TAO:0002053] @@ -378005,6 +399487,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002054 name: vertebra 5-vertebra 6 joint def: "Joint between the centra, and sometimes the neural arches or parapophyses." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005505 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -378018,6 +399502,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002055 name: vertebra 6 - vertebra 7 joint def: "Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 6 and vertebra 7." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005506 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -378052,12 +399538,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002058 name: Weberian complex centrum def: "Centrum that is the fusion of centra 2-4." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002059 name: posttemporal-parietal joint +subset: human_subset +subset: mouse_subset is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: connects UBERON:0004865 ! actinopterygian parietal bone @@ -378070,6 +399560,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002061 name: predorsal vertebra def: "Vertebra that is positioned between the vertebra immediately anterior to the first dorsal-fin pterygiophore to the anteriormost vertebra." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002412 ! vertebra property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378085,6 +399577,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002063 name: nuchal plate series def: "Anatomical cluster that consists of more than one type of nuchal plate in an individual." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:2001815 ! nuchal plate @@ -378114,6 +399608,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002066 name: auditory fenestra def: "Opening in the neurocranium to allow communication between the swimbladder and the inner ear." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005418 is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378141,6 +399637,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002069 name: distal cartilage of posterior process of basipterygium def: "Process that is cartilaginous and arises from the distal margin or tip of posterior process of basipterygium and projects posteriorly." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001539 ! basipterygium cartilage @@ -378151,6 +399649,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002070 name: internal anterior process of basipterygium def: "Process that is bony and arises from anteromedial corner of basipterygium and projects anteriorly or anteromedially." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "internal anterior arm of basipterygium" EXACT [TAO:0002070] synonym: "internal arm of the basipterygium" EXACT [TAO:0002070] synonym: "mesial anterior arm of basipterygium" EXACT [TAO:0002070] @@ -378164,6 +399664,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002071 name: distal cartilage of internal anterior process of basipterygium def: "Process that is cartilaginous and arises from the distal tip of internal anterior process of basipterygium." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone @@ -378174,6 +399676,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002072 name: middle anterior process of basipterygium def: "Process that is bony and arises from anterior margin of basipterygium between internal anterior process of basipterygium and external anterior process of basipterygium. Middle anterior process of basipterygium projects anteriorly or anteromedially." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "middle anterior arm of basipterygium" EXACT [TAO:0002072] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -378184,6 +399688,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002073 name: distal cartilage of middle anterior process of basipterygium def: "Process that is cartilaginous and arises from the distal tip of middle anterior process of basipterygium." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone @@ -378194,6 +399700,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002074 name: external anterior process of basipterygium def: "Process that is bony and arises from anterolateral corner of basipterygium and projects anteriorly or anteromedially." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "external anterior arm of basipterygium" EXACT [TAO:0002074] synonym: "external arm of basipterygium" EXACT [TAO:0002074] synonym: "lateral anterior process of basipterygium" EXACT [TAO:0002074] @@ -378207,6 +399715,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002075 name: distal cartilage of external anterior process of basipterygium def: "Process that is cartilaginous and arises from the distal tip of external anterior process of basipterygium." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone @@ -378217,6 +399727,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002076 name: lateral process of basipterygium def: "Process that is bony and arises from lateral margin of basipterygium lateral to pelvic fin lepidotrichium 1 and projects laterally or anterolaterally." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "posterolateral process of basipterygium" EXACT [TAO:0002076] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -378255,6 +399767,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002080 name: spina occipitalis def: "Process that is a ventral projection from the supraoccipital that extends between the exoccipitals to the dorsal margin of the foramen magnum." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004747 ! supraoccipital bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378324,6 +399838,8 @@ id: UBERON:2002088 name: interhaemal bone def: "A small bone articulating distally with the haemal arch or a short haemal spine." [TAO:wd] comment: Definition from Arratia 1999. +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0002090 ! postcranial axial skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378333,6 +399849,8 @@ id: UBERON:2002089 name: gular plate def: "Dermal bone located on the ventral surface of the skull and positioned between the two rami of the lower jaw. Anteriorly the gular attaches to the symphysis of the lower jaw through fibrous connective tissue. The gular is an unpaired median bone." [TAO:ga_tg, TAO:wd] comment: A gular plate is absent in most extant teleosts. +subset: human_subset +subset: mouse_subset synonym: "median gular" EXACT [TAO:0002089] synonym: "median gular plate" EXACT [] is_a: UBERON:0008907 ! dermal bone @@ -378343,6 +399861,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002090 name: pro-otic fossa +subset: human_subset +subset: mouse_subset synonym: "prootic fossa" EXACT [TAO:0002090] xref: ZFA:0005492 is_a: UBERON:0004704 ! bone fossa @@ -378361,6 +399881,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002092 name: rostral cartilage def: "Median chondrified cartilage bound to premaxillary ascending process by a rostro-premaxilla ligament." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001703 ! neurocranium @@ -378380,6 +399902,8 @@ id: UBERON:2002095 name: ventromedial opening of posttemporal fossa def: "A third opening of the posttemporal fossa posteriorly located relative to the fossa. It is bordered completely by the epiocciptial, or by both the epioccipital and exoccipital." [PHENOSCAPE] {def="http://dx.doi.org/10.1590/S1679-62252010000300001"} comment: Present in some characiforms. +subset: human_subset +subset: mouse_subset synonym: "third posttemporal fossa" EXACT [] is_a: UBERON:0004705 ! fenestra relationship: part_of UBERON:2001753 ! posttemporal fossa @@ -378389,6 +399913,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002096 name: bony plate series def: "Anatomical cluster that consists of more than one bony plate in an individual." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "armor plate series" EXACT [TAO:0002096] is_a: UBERON:0010912 ! subdivision of skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378397,12 +399923,15 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002097 name: sensory canal pore series def: "Anatomical cluster that consists of more than one sensory canal pore." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002098 name: hemal spine series +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster relationship: composed_primarily_of UBERON:2001364 ! hemal spine property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378423,6 +399952,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002101 name: branchiostegal ray series def: "Anatomical cluster that consists of the branchiostegal rays within an individual." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "branchiostegals" RELATED [TAO:0002101] is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster @@ -378436,6 +399967,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002102 name: epibranchial series def: "Anatomical cluster that consists of the epibranchial elements within an individual." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "epibranchials" EXACT OMO:0003004 [TAO:0002102] is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster @@ -378448,6 +399981,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002103 name: ceratobranchial series def: "Anatomical cluster that consists of the ceratobranchial elements within an individual." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:2001898 ! ceratobranchial element @@ -378460,6 +399995,8 @@ id: UBERON:2002105 name: electrosensory lateral line lobe def: "Anatomical structure located in the hindbrain that receives primary electroreceptor input." [TAO:wd] comment: Definition reference: McNamara, AM., JP Denizot, CD Hopkins. 2005. Comparative Anatomy of the Electrosensory Lateral Line Lobe of Mormyrids: The Mystery of the Missing Map in the Genus Stomatorhinus (Family: Mormyridae). Brain, Behavior and Evolution 65:188-201. +subset: human_subset +subset: mouse_subset synonym: "ELL" EXACT [TAO:0002105] is_a: UBERON:0009662 ! hindbrain nucleus relationship: part_of UBERON:0002028 ! hindbrain @@ -378470,6 +400007,8 @@ id: UBERON:2002106 name: eminentia granularis def: "Anatomical structure that is a subdivision of the cerebellum; it is the location of some lateral line nerve synapses." [TAO:wd] comment: Definition based on Albert,2001 [Albert JS. 2001. Species Diversity and Phylogenetic systematics of American Knifefishes (Gymnotiformes, Teleostei). Miscellaneous Publications, Museum of Zoology, University of Michigan no. 190:140 pages.] +subset: human_subset +subset: mouse_subset synonym: "EG" EXACT [TAO:0002106] is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum @@ -378480,6 +400019,8 @@ id: UBERON:2002107 name: medullary command nucleus def: "Anatomical structure that consists of two neuron types: pacemaker cells and relay cells. The medullary command nucleus commands the timing of the electric organ discharge." [TAO:wd] comment: Definition reference: Moortgat, KT, Bullock, TH, and Sejnowski TJ. 2000. J Neurophysiol 83: 971-983. Precision of the Pacemaker Nucleus in a Weakly Electric Fish: Network Versus Cellular Influences. +subset: human_subset +subset: mouse_subset synonym: "MCN" EXACT [TAO:0002107] synonym: "medullary pacemaker nucleus" EXACT [TAO:0002107] synonym: "pacemaker nucleus" EXACT [TAO:0002107] @@ -378491,6 +400032,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002108 name: buccal papilla def: "Papilla that is part of the mouth." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001995 ! papilla relationship: part_of UBERON:0000165 ! mouth property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378504,12 +400047,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002110 name: metapterygoid-quadrate fenestra +subset: human_subset +subset: mouse_subset is_a: UBERON:0005744 ! bone foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002111 name: prootic bulla +subset: human_subset +subset: mouse_subset xref: ZFA:0005500 is_a: UBERON:0000481 ! multi-tissue structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378527,6 +400074,8 @@ id: UBERON:2002114 name: cotylephore def: "Multi-tissue structure that is a transient outgrowth of tissue on skin brooding fish that acts as an attachment site for embryos." [TAO:wd] comment: Definition reference: James Wetzel, John P. Wourms and John Friel 1997. Comparative morphology of cotylephores in Platystacus and Solenostomus: modifications of the integument for egg attachment in skin-brooding fishes. Environmental Biology of Fishes. Volume 50, Number 1 / September, 1997. Pages 13 - 25. +subset: human_subset +subset: mouse_subset synonym: "cotylephores" EXACT OMO:0003004 [TAO:0002114] is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0005156 ! reproductive structure @@ -378542,6 +400091,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002116 name: epibranchial organ +subset: human_subset +subset: mouse_subset is_a: UBERON:0003103 ! compound organ is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001042 ! chordate pharynx @@ -378551,6 +400102,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002117 name: ovipositor def: "Organ that functions in egg deposition." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003103 ! compound organ is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000990 ! reproductive system @@ -378576,6 +400129,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002120 name: orbitosphenoid septum +subset: human_subset +subset: mouse_subset is_a: UBERON:0003037 ! septum is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure @@ -378594,6 +400149,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002123 name: neural arch 5 +subset: human_subset +subset: mouse_subset is_a: UBERON:0003861 ! neural arch property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378602,6 +400159,8 @@ id: UBERON:2002124 name: nuptial tubercle def: "Surface structure that is a small protuberance on the surface of the body. Nuptial tubercles primarily function to facilitate contact between individuals for breeding." [TAO:wd] comment: Nuptial tubercles may be keratinized or nonkeratinized. Also may function in territorial defense or stimulation of females in breeding.\n\nDefinition reference: Wiley, M. L. and B. B. Collette. 1970. Breeding tubercles and contact organs in fishes: Their occurrence, structure, and significance. Bull Am Mus Nat Hist 143: 143-216. +subset: human_subset +subset: mouse_subset synonym: "breeding tubercle" EXACT [TAO:0002124] synonym: "contact organ" EXACT [TAO:0002124] is_a: UBERON:0003102 ! surface structure @@ -378634,6 +400193,8 @@ id: UBERON:2002127 name: myorhabdoid bone def: "Intermuscular bone that is located in the dorsal and ventral forward flexures of the myoseptum." [TAO:wd] comment: Definition reference:\nPatterson, C., Johnson, G.D. 1995. The intermuscular bones and ligaments of teleostean fishes. Smithosonian Contributions to Zoology 559:1-85. +subset: human_subset +subset: mouse_subset synonym: "myorhabdoi" EXACT OMO:0003004 [TAO:0002127] is_a: UBERON:2000526 ! intermuscular bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378641,6 +400202,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002128 name: cavum sinus imparis +subset: human_subset +subset: mouse_subset synonym: "cavum sinus impar" EXACT [TAO:0002128] is_a: UBERON:0000464 ! anatomical space property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378662,6 +400225,8 @@ id: UBERON:2002130 name: caudal appendage def: "Multi-tissue structure that is region of the body posterior to the last anal-fin ray." [TAO:wd] comment: Comments: This is a gymnotiform structure. The caudal appendage can include vertebrae, a cartilginous rod, pterygiophores, anal-fin rays, and intermuscular bones.\nDefinition reference: Albert, JS and WL Fink. 2007. PHYLOGENETIC RELATIONSHIPS OF FOSSIL NEOTROPICAL ELECTRIC FISHES (OSTEICHTHYES: GYMNOTIFORMES) FROM THE UPPER MIOCENE OF BOLIVIA. Journal of Vertebrate Paleontology 27(1):17-25. +subset: human_subset +subset: mouse_subset synonym: "caudal filament" EXACT [TAO:0002130] is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of NCBITaxon:6072 ! Eumetazoa @@ -378687,6 +400252,8 @@ id: UBERON:2002133 name: dorsal organ def: "Surface structure that is a midsaggital strap of flattened ectodermal tissue extending along the posterodorsal midline." [TAO:wd] comment: Dorsal organ is a structure found in apteronotid gymnotiform fishes. Definition reference:\n\nAlbert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical electric fish (Osteichthyes: Gymnotiformes) from the Upper Miocene of Bolivia. Journal of Vertebrate Paleontology 27:17-25. +subset: human_subset +subset: mouse_subset is_a: UBERON:0003102 ! surface structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378694,6 +400261,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002141 name: annular ligament def: "Ligament that is in the eye and is located at the angle between the cornea and the iris." [ZFA:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001676 is_a: UBERON:0008846 ! skeletal ligament property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378718,6 +400287,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002147 name: arrector muscle +subset: human_subset +subset: mouse_subset xref: ZFA:0005275 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378726,6 +400297,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002149 name: vertebral element 9 def: "Vertebra that is posteriorly adjacent to vertebra 8." [TAO:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005351 is_a: UBERON:0010913 ! vertebral element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378735,6 +400308,8 @@ property_value: vertebra_number "9" xsd:nonNegativeInteger id: UBERON:2002150 name: vertebral element 10 def: "Vertebra that is posteriorly adjacent to vertebra 9." [TAO:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005353 is_a: UBERON:0010913 ! vertebral element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378744,6 +400319,8 @@ property_value: vertebra_number "10" xsd:nonNegativeInteger id: UBERON:2002151 name: vertebral element 11 def: "Vertebra that is posteriorly adjacent to vertebra 10." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005354 is_a: UBERON:0010913 ! vertebral element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378753,6 +400330,8 @@ property_value: vertebra_number "11" xsd:nonNegativeInteger id: UBERON:2002152 name: vertebral element 12 def: "Vertebra that is posteriorly adjacent to vertebra 11. May have hemal arch and rib." [TAO:wd] +subset: human_subset +subset: mouse_subset xref: ZFA:0005352 is_a: UBERON:0010913 ! vertebral element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378762,6 +400341,8 @@ property_value: vertebra_number "12" xsd:nonNegativeInteger id: UBERON:2002154 name: opercular cavity def: "Anatomical space which is located beneath the operculum and external to the gills." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001654 is_a: UBERON:0000464 ! anatomical space property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378865,12 +400446,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002168 name: preural centrum 1 + ural centrum 1 + ural centrum 2 def: "Urostyle that is the result of fusion of preural centrum 1 with ural centra 1 and 2." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003106 ! urostyle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002172 name: branchial mesenchyme +subset: human_subset +subset: mouse_subset xref: ZFA:0001650 is_a: UBERON:0005253 ! head mesenchyme property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378879,6 +400464,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002174 name: octaval nerve motor nucleus def: "Hindbrain nucleus which consists of cell bodies whose axons exit the hindbrain via cranial nerve VIII and innervate hair cells of the lateral line and inner ear. The neurons of these nuclei are unusual in that they extend both contra- and ipsilateral dendrites." [PMID:17182783] +subset: human_subset +subset: mouse_subset xref: ZFA:0001697 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata @@ -378888,6 +400475,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002175 name: rostral octaval nerve motor nucleus +subset: human_subset +subset: mouse_subset synonym: "ROLE" EXACT [TAO:0002175] synonym: "rostral cranial nerve VIII motor nucleus" EXACT [TAO:0002175] xref: ZFA:0001698 @@ -378897,6 +400486,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002176 name: caudal octaval nerve motor nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0001699 is_a: UBERON:2002174 ! octaval nerve motor nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -378933,6 +400524,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002192 name: dorsolateral motor nucleus of vagal nerve def: "Motor nucleus of vagal nerve that is located within the dorsolateral portion of rhomobomere 8." [ZFIN:ZDB-PUB-090417-11] +subset: human_subset +subset: mouse_subset synonym: "dlX" EXACT [TAO:0002192] xref: ZFA:0001695 is_a: UBERON:2000297 ! vagal lobe @@ -378942,6 +400535,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002193 name: dorsolateral septum def: "Portion of tissue that grows in from the dorsolateral wall of the otic vesicle, forming a dorsolateral partition between the developing anterior and posterior semicircular canals." [ZFIN:ZDB-PUB-961014-383] +subset: human_subset +subset: mouse_subset synonym: "dorsal bar" RELATED [TAO:0002193] xref: ZFA:0001672 is_a: UBERON:0000479 ! tissue @@ -378954,6 +400549,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002195 name: epidermal placode def: "Portion of tissue that is a thickening and reshaping of the epidermal basal stratum cells beneath which fibroblasts accumulate to form the scale primordium." [ZFIN:ZDB-PUB-081008-12] +subset: human_subset +subset: mouse_subset xref: ZFA:0001703 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -378981,6 +400578,8 @@ is_obsolete: true id: UBERON:2002200 name: hypobranchial muscle def: "Head muscle that originates on the anterior region of the cleithrum and inserts on the urohyal. The hypobranchial forms initially as left and right parts that later fuse together forming a cone shape." [ZFIN:ZDB-PUB-080306-33] +subset: human_subset +subset: mouse_subset synonym: "sternohyoideus" RELATED [TAO:0002200] xref: ZFA:0001651 is_a: UBERON:0002376 ! cranial muscle @@ -378990,6 +400589,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002202 name: intermediate nucleus def: "Diencephalic nucleus which is located between the dorsal hypothalamus and the caudal tuberal nucleus and does not contain tyrosine hydroxylase immunoreactive cells." [ZFIN:ZDB-PUB-001220-2] +subset: human_subset +subset: mouse_subset xref: ZFA:0001669 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum @@ -379015,6 +400616,8 @@ is_obsolete: true [Term] id: UBERON:2002206 name: macula communis +subset: human_subset +subset: mouse_subset xref: ZFA:0001671 is_a: UBERON:0006937 ! inner ear epithelium relationship: part_of UBERON:0001846 ! internal ear @@ -379023,6 +400626,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002207 name: medial motor nucleus of vagal nerve +subset: human_subset +subset: mouse_subset synonym: "mmX" EXACT [TAO:0002207] xref: ZFA:0001696 is_a: UBERON:2000297 ! vagal lobe @@ -379068,6 +400673,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002215 name: otic vesicle protrusion +subset: human_subset +subset: mouse_subset xref: ZFA:0001715 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -379077,6 +400684,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002216 name: otic vesicle ventral protrusion +subset: human_subset +subset: mouse_subset xref: ZFA:0001716 is_a: UBERON:2002215 ! otic vesicle protrusion property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -379084,6 +400693,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002217 name: parasphenoid-pterosphenoid joint +subset: human_subset +subset: mouse_subset is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: connects UBERON:0004745 ! parasphenoid @@ -379108,6 +400719,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002219 name: parvocellular preoptic nucleus +subset: human_subset +subset: mouse_subset xref: ZFA:0001680 is_a: UBERON:0006569 ! diencephalic nucleus property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -379115,6 +400728,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002221 name: pericardial muscle +subset: human_subset +subset: mouse_subset xref: ZFA:0001653 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0005177 ! trunk region element @@ -379131,6 +400746,8 @@ is_obsolete: true [Term] id: UBERON:2002223 name: pillar of the semicircular canal +subset: human_subset +subset: mouse_subset xref: ZFA:0001717 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -379140,6 +400757,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002224 name: pleuroperitoneal cavity +subset: human_subset +subset: mouse_subset xref: ZFA:0001656 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002323 ! coelemic cavity lumen @@ -379148,6 +400767,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002225 name: posterior pronephric duct +subset: human_subset +subset: mouse_subset synonym: "posterior pronephric ducts" EXACT OMO:0003004 [TAO:0002225] xref: ZFA:0001623 is_a: UBERON:0004120 ! mesoderm-derived structure @@ -379159,6 +400780,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002226 name: preglomerular nucleus def: "Diencephalic nucleus which is located in the caudal tuberculum. The preglomerular nuclei make up most of the migrated nuclei within the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0001662 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000633 ! caudal tuberculum @@ -379167,6 +400790,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002229 name: presumptive atrium primitive heart tube +subset: human_subset +subset: mouse_subset xref: ZFA:0001721 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure @@ -379176,6 +400801,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002232 name: presumptive cardiac ventricle primitive heart tube +subset: human_subset +subset: mouse_subset xref: ZFA:0001720 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure @@ -379185,6 +400812,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002235 name: presumptive ventral mesoderm +subset: human_subset +subset: mouse_subset xref: ZFA:0001714 is_a: UBERON:0006603 ! presumptive mesoderm property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -379200,6 +400829,8 @@ is_obsolete: true [Term] id: UBERON:2002240 name: Purkinje cell layer corpus cerebelli +subset: human_subset +subset: mouse_subset xref: ZFA:0001706 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -379218,6 +400849,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002242 name: scale primordium +subset: human_subset +subset: mouse_subset xref: ZFA:0001704 is_a: UBERON:0000479 ! tissue is_a: UBERON:0001048 ! primordium @@ -379228,6 +400861,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002244 name: supraoptic tract +subset: human_subset +subset: mouse_subset synonym: "SOT" EXACT [TAO:0002244] xref: ZFA:0001657 is_a: UBERON:0003544 ! brain white matter @@ -379282,6 +400917,8 @@ consider: UBERON:0008248 id: UBERON:2002255 name: ocular side def: "Organism subdivision that is the side of the body possessing eyes." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "eyed side" EXACT [TAO:0002255] is_a: UBERON:0000475 ! organism subdivision property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -379290,12 +400927,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002256 name: blind side def: "Organism subdivision that is the side of the body lacking eyes." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000475 ! organism subdivision property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002257 name: premaxilla dentigerous process +subset: human_subset +subset: mouse_subset synonym: "premaxilla alveolar process" EXACT [TAO:0002257] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -379305,6 +400946,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002258 name: trituration tooth +subset: human_subset +subset: mouse_subset is_a: UBERON:0001091 ! calcareous tooth property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -379312,6 +400955,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002260 name: premaxillary-maxillary joint def: "Joint that articulates the premaxilla and maxilla. Premaxillary-maxillary joint is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001950 ! inter-premaxillary joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: connects UBERON:0002244 ! premaxilla @@ -379338,36 +400983,48 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002263 name: epineural 1 +subset: human_subset +subset: mouse_subset is_a: UBERON:2000507 ! epineural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002264 name: epineural 2 +subset: human_subset +subset: mouse_subset is_a: UBERON:2000507 ! epineural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002265 name: epineural 3 +subset: human_subset +subset: mouse_subset is_a: UBERON:2000507 ! epineural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002266 name: epineural 4 +subset: human_subset +subset: mouse_subset is_a: UBERON:2000507 ! epineural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002267 name: epineural 5 +subset: human_subset +subset: mouse_subset is_a: UBERON:2000507 ! epineural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} [Term] id: UBERON:2002268 name: epineural 6 +subset: human_subset +subset: mouse_subset is_a: UBERON:2000507 ! epineural property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -379376,6 +401033,8 @@ id: UBERON:2002269 name: interarcual cartilage def: "Pharyngeal arch cartilage located between uncinate process of epibranchial 1 and pharyngobranchial 2." [TAO:wd] comment: An interarcual cartilage is present in percomorph fishes (Johnson and Patterson 1993). +subset: human_subset +subset: mouse_subset synonym: "IAC" EXACT [TAO:0002269] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton @@ -379468,6 +401127,8 @@ relationship: develops_from UBERON:2202280 ! pectoral fin distal radial cartilag [Term] id: UBERON:2002281 name: retractor posttemporalis +subset: human_subset +subset: mouse_subset is_a: UBERON:0002376 ! cranial muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -379475,6 +401136,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002282 name: preopercle-opercle joint def: "Joint that articulates the preopercle and opercle. Preopercle-opercle joint is paired." [TAO:wd] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: connects UBERON:2000250 ! opercle @@ -379486,6 +401149,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002283 name: melanophore spot +subset: human_subset +subset: mouse_subset synonym: "spot" EXACT [TAO:0002283] synonym: "spots" EXACT OMO:0003004 [TAO:0002283] is_a: UBERON:2002284 ! body marking @@ -379495,6 +401160,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002284 name: body marking def: "Surface structure that is a visible mark on the body resulting from pigmentation." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "markings" EXACT OMO:0003004 [TAO:0002284] is_a: UBERON:3000961 ! external integument structure relationship: part_of UBERON:0002199 ! integument @@ -379577,6 +401244,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005000 name: basal communicating artery +subset: human_subset +subset: mouse_subset synonym: "BCA" EXACT [TAO:0005000] xref: ZFA:0005000 is_a: UBERON:0001637 ! artery @@ -379588,6 +401257,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005010 name: mid cerebral vein def: "The mesencephalic veins (MsV) enter the mid cerebral veins (MCeV) at the dorsal midline. THe MCeVs originate at the dorsal midline, proceede lateraly in a ventral direction to drain into the paired primordial midbrain channels (PHBC). ogai et al. 2001., Kimmel et al. 1993." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "MCeV" EXACT [TAO:0005010] synonym: "mid-cerebral vein" EXACT [TAO:0005010] synonym: "middle cerebral vein" EXACT [TAO:0005010] @@ -379601,6 +401272,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005011 name: pseudobranchial artery def: "A vascular loop attached to the efferent part of the mandibular arch that forms at 3.5 dpf. Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005011 is_a: UBERON:0001637 ! artery relationship: develops_from UBERON:0003118 ! pharyngeal arch artery 1 @@ -379613,7 +401286,6 @@ synonym: "AFA" EXACT [TAO:0005012] synonym: "afferent filamental arteries" EXACT OMO:0003004 [TAO:0005012] xref: ZFA:0005012 is_a: UBERON:0003469 ! respiratory system artery -is_a: UBERON:0003496 ! head blood vessel relationship: part_of UBERON:2000666 ! filamental artery relationship: part_of UBERON:2000716 ! afferent portion of pharyngeal arch artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -379625,7 +401297,6 @@ def: "The branch of the afferent branchial artery that continues posteriodorsall synonym: "CCB" EXACT [TAO:0005013] xref: ZFA:0005013 is_a: UBERON:0003469 ! respiratory system artery -is_a: UBERON:0003496 ! head blood vessel relationship: part_of UBERON:2000716 ! afferent portion of pharyngeal arch artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -379637,7 +401308,6 @@ synonym: "RCB" EXACT [TAO:0005014] synonym: "recurrent branch afferent branchial arteries" EXACT OMO:0003004 [TAO:0005014] xref: ZFA:0005014 is_a: UBERON:0003469 ! respiratory system artery -is_a: UBERON:0003496 ! head blood vessel relationship: part_of UBERON:2000716 ! afferent portion of pharyngeal arch artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -379649,7 +401319,6 @@ synonym: "AFL" EXACT [TAO:0005015] xref: ZFA:0005015 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003469 ! respiratory system artery -is_a: UBERON:0003496 ! head blood vessel relationship: part_of UBERON:2000211 ! gill lamella relationship: part_of UBERON:2005012 ! afferent filamental artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -379658,6 +401327,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005017 name: primordial midbrain channel def: "The vessel between the anterior cerebral vein and the mid cerebral vein. Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "PMBC" EXACT [TAO:0005017] xref: ZFA:0005017 is_a: UBERON:0003496 ! head blood vessel @@ -379671,7 +401342,6 @@ name: efferent filamental artery synonym: "EFA" EXACT [TAO:0005018] xref: ZFA:0005018 is_a: UBERON:0003469 ! respiratory system artery -is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0003920 ! venous blood vessel relationship: part_of UBERON:2000202 ! efferent portion of pharyngeal arch artery relationship: part_of UBERON:2000666 ! filamental artery @@ -379685,7 +401355,6 @@ synonym: "ELA" EXACT [TAO:0005019] xref: ZFA:0005019 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003469 ! respiratory system artery -is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0003920 ! venous blood vessel relationship: part_of UBERON:2000211 ! gill lamella relationship: part_of UBERON:2005018 ! efferent filamental artery @@ -379695,6 +401364,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005020 name: central artery def: "Arteries that irrigate the forebrain and midbrain Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "CtA" EXACT [TAO:0005020] xref: ZFA:0005020 is_a: UBERON:0001637 ! artery @@ -379706,6 +401377,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005021 name: cerebellar central artery def: "Extend upward from the PCS, branch to provide an arterial feed to the hindbrain, then drain back down into the PHBC Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "CCtA" EXACT [TAO:0005021] xref: ZFA:0005021 is_a: UBERON:2005020 ! central artery @@ -379715,6 +401388,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005022 name: opercular artery def: "The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch. Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "external carotid artery" RELATED [TAO:0005022] synonym: "ORA" EXACT [TAO:0005022] xref: ZFA:0005022 @@ -379726,6 +401401,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005025 name: dorsal longitudinal anastomotic vessel def: "Trunk vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata. Isogai et al. 2001." [ZFIN:curator] +subset: mouse_subset synonym: "DLAV" EXACT [TAO:0005025] xref: ZFA:0005025 is_a: UBERON:0003513 ! trunk blood vessel @@ -379738,6 +401414,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005026 name: primary head sinus def: "Main route for venous drainage of the anterior and mid cerebral veins as well as portions of the primordial hindbrain channel. Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "lateral head vein" EXACT [TAO:0005026] synonym: "PHS" EXACT [TAO:0005026] xref: ZFA:0005026 @@ -379750,6 +401428,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005027 name: posterior cerebral vein def: "Vein that drains the dorsal longitudinal vessel and the caudal portions of the venous capillary network of the medulla oblongata. Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "caudal cerebral vein" EXACT [TAO:0005027] synonym: "PCeV" EXACT [TAO:0005027] xref: ZFA:0005027 @@ -379762,6 +401442,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005029 name: rostral blood island def: "Hematopoietic tissue derived from the cephalic mesoderm. Predominantly produces myeloid cells. de Jong and Zon 2005." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "RBI" EXACT [TAO:0005029] xref: ZFA:0005029 is_a: UBERON:0000479 ! tissue @@ -379773,6 +401455,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005030 name: dorsal ciliary vein +subset: human_subset +subset: mouse_subset synonym: "DCV" EXACT [TAO:0005030] xref: ZFA:0005030 is_a: UBERON:0003496 ! head blood vessel @@ -379785,6 +401469,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005031 name: dorsal longitudinal vein def: "Vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata. Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "DLV" EXACT [TAO:0005031] xref: ZFA:0005031 is_a: UBERON:0001638 ! vein @@ -379796,6 +401482,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005032 name: optic vein def: "Vein that connects to the hyaloid vein that drains the eye. External to eye. Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "OV" EXACT [TAO:0005032] xref: ZFA:0005032 is_a: UBERON:0003496 ! head blood vessel @@ -379807,6 +401495,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005034 name: parachordal vessel def: "Vessels run longitudinally along the horizontal myoseptum. These vessels are not functional until after lumenization which occurs near 4 dpf. Isogai et al. 2003." [ZFIN:curator] +subset: mouse_subset synonym: "PAV" EXACT [TAO:0005034] xref: ZFA:0005034 is_a: UBERON:0003481 ! tail vein @@ -379821,6 +401510,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005036 name: supraintestinal artery def: "A continuation of the anterior mesenteric artery, which branches out from the dorsal aorta just caudal to the pronephric glomus. Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "SIA" EXACT [TAO:0005036] xref: ZFA:0005036 is_a: UBERON:0001637 ! artery @@ -379829,6 +401520,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005038 name: supraintestinal vein +subset: human_subset +subset: mouse_subset xref: ZFA:0005038 is_a: UBERON:0001638 ! vein is_a: UBERON:0003513 ! trunk blood vessel @@ -379838,6 +401531,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005039 name: anterior lateral mesoderm +subset: human_subset +subset: mouse_subset xref: ZFA:0005039 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -379856,6 +401551,8 @@ is_obsolete: true id: UBERON:2005044 name: optic artery def: "The artery that carries blood to the eye. It branches from the internal carotid artery and enters the eye ventrally through the optic fissure. Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005044 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel @@ -379868,6 +401565,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005048 name: primitive prosencephalic artery def: "Vessel that branches from cranial division of the internal carotid artery, extending laterally around the rostral end of the head. Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "PPrA" EXACT [TAO:0005048] xref: ZFA:0005048 is_a: UBERON:0001637 ! artery @@ -379877,6 +401576,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005049 name: prosencephalic artery def: "After the primitive prosencephalic artery forms it becomes disconnected from the cranial division of the internal carotid artery and instead it connects to the anterior mesencephalic central artery and the communicating vessels of the palatocerebral artery." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "PrA" EXACT [TAO:0005049] xref: ZFA:0005049 is_a: UBERON:0001637 ! artery @@ -379887,6 +401588,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005050 name: palatocerebral artery def: "The PLA branches ventrally from the CrDI. It extends rostrally along the base of mid- and forebrain, then loops medially and links to the corresponding vessel from the other side of the embryo. Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "PLA" EXACT [TAO:0005050] xref: ZFA:0005050 is_a: UBERON:0001637 ! artery @@ -379896,6 +401599,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005051 name: communicating vessel palatocerebral artery def: "Connect the palatocerebral artery with the prosencephalic artery. Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "CMV" EXACT [TAO:0005051] synonym: "communicating vessels" EXACT [TAO:0005051] xref: ZFA:0005051 @@ -379906,6 +401611,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005052 name: anterior mesencephalic central artery def: "Arteries that irrigate rostral regions of the midbrain. They extend between the Basial communicating artery to the anterior cerebral vein. Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "AMCtA" EXACT [TAO:0005052] synonym: "rostral mesencephalic central artery" EXACT [TAO:0005052] xref: ZFA:0005052 @@ -379915,6 +401622,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005053 name: nasal ciliary artery +subset: human_subset +subset: mouse_subset synonym: "NCA" EXACT [TAO:0005053] xref: ZFA:0005053 is_a: UBERON:0001637 ! artery @@ -379923,6 +401632,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005054 name: inner optic circle +subset: human_subset +subset: mouse_subset synonym: "IOC" EXACT [TAO:0005054] xref: ZFA:0005054 is_a: UBERON:0002203 ! vasculature of eye @@ -379935,6 +401646,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005055 name: median palatocerebral vein def: "Drains the PLA loop proceeds straight caudally along the cranial midline just above the pharynx, just below the diencephalon. Forms a 'T' with the palatocerebral veins. Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "MPLV" EXACT [TAO:0005055] xref: ZFA:0005055 is_a: UBERON:0003496 ! head blood vessel @@ -379946,6 +401659,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005056 name: palatocerebral vein def: "Vein that drains the median palatocerebral vein into the optic vein. Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "PLV" EXACT [TAO:0005056] xref: ZFA:0005056 is_a: UBERON:0003496 ! head blood vessel @@ -379957,6 +401672,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005066 name: bulbus arteriosus outer layer def: "Composed of scattered layers of interrupted elastic lamina. Hu et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "bulbus arteriosus externa" EXACT [TAO:0005066] xref: ZFA:0005066 is_a: UBERON:0004120 ! mesoderm-derived structure @@ -379968,6 +401685,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005067 name: bulbus arteriosus middle layer def: "Composed of 7-10 layers of helically arranged smooth muscle cells surrounded by a fine network of collagen, reticular, and elastic fibrils. Hu et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "bulbus arteriosus media" EXACT [TAO:0005067] xref: ZFA:0005067 is_a: UBERON:0000481 ! multi-tissue structure @@ -379980,6 +401699,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005068 name: bulbus arteriosus inner layer def: "Composed of subendothelium with longitudinally oriented collagen, reticular fibrils, elastic fibers, and smooth muscle cells bound by a thin endothelial layer. Hu et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "bulbus arteriosus intima" EXACT [TAO:0005068] xref: ZFA:0005068 is_a: UBERON:0000481 ! multi-tissue structure @@ -379991,6 +401712,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005072 name: endocardial ring +subset: human_subset +subset: mouse_subset xref: ZFA:0005072 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! mesoderm-derived structure @@ -380000,6 +401723,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005073 name: atrioventricular ring +subset: human_subset +subset: mouse_subset synonym: "AV ring" EXACT [TAO:0005073] xref: ZFA:0005073 is_a: UBERON:2005072 ! endocardial ring @@ -380011,6 +401736,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005074 name: central cardiac conduction system def: "Cardiac conduction system, characterized by slow impulse propagation and prolonged refractory periods." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005074 is_a: UBERON:0002350 ! conducting system of heart property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -380019,6 +401746,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005075 name: peripheral cardiac conduction system def: "Portion of the cardiac conduction system, with rapid impulse propagation." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005075 is_a: UBERON:0002350 ! conducting system of heart property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -380034,6 +401763,8 @@ is_obsolete: true id: UBERON:2005078 name: middle mesencephalic central artery def: "Project rostrally and dorsally from the AMCtA to to irrigate the midportion of the midbrain Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "MMCtA" EXACT [TAO:0005078] xref: ZFA:0005078 is_a: UBERON:2005020 ! central artery @@ -380043,6 +401774,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005079 name: posterior mesencephalic central artery def: "Project dorsally from BCA to irrigate the caudal part of midbrain Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "caudal mesencephalic central artery" EXACT [TAO:0005079] synonym: "PMCtA" EXACT [TAO:0005079] xref: ZFA:0005079 @@ -380053,6 +401786,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005080 name: anterior mesenteric artery def: "Unpaired artery departing from dorsal aorta, typically supplying the small intestine." [ISBN10:0073040584] +subset: human_subset +subset: mouse_subset synonym: "AMA" EXACT [TAO:0005080] synonym: "rostral mesenteric artery" EXACT [TAO:0005080] xref: ZFA:0005080 @@ -380062,6 +401797,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005082 name: dorsal branch nasal ciliary artery +subset: human_subset +subset: mouse_subset xref: ZFA:0005082 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:2005053 ! nasal ciliary artery @@ -380070,6 +401807,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005083 name: ventral branch nasal ciliary artery +subset: human_subset +subset: mouse_subset xref: ZFA:0005083 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:2005053 ! nasal ciliary artery @@ -380079,6 +401818,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005084 name: metencephalic artery def: "These arteies branch dorsally from both sides of the posterior communicating artery looping up to join with the opposite MtA as well as with both middle cerebral veins at the dorsal midline of the head. Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005084 is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -380087,6 +401828,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005085 name: nasal artery def: "The nasal arteries start at the internal carotid artey and travel rostrally, passing along the right and left walls of the nasal sac at the most rostral end of the head. From the nasal sac, the NA flows into the nasal veins. Isogai et al. 2001." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "NA" EXACT [TAO:0005085] xref: ZFA:0005085 is_a: UBERON:0001637 ! artery @@ -380095,6 +401838,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005087 name: pectoral vein +subset: human_subset +subset: mouse_subset synonym: "PV" EXACT [TAO:0005087] xref: ZFA:0005087 is_a: UBERON:0001638 ! vein @@ -380106,6 +401851,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005088 name: posterior mesenteric artery def: "Unpaired artery departing from dorsal aorta that typically supplies the large intestine." [ISBN10:0073040584] +subset: human_subset +subset: mouse_subset synonym: "caudal mesenteric artery" EXACT [TAO:0005088] synonym: "PMA" EXACT [TAO:0005088] xref: ZFA:0005088 @@ -380125,6 +401872,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005093 name: nasal vein +subset: human_subset +subset: mouse_subset synonym: "NV" EXACT OMO:0003000 [TAO:0005093] xref: ZFA:0005093 is_a: UBERON:0003496 ! head blood vessel @@ -380206,6 +401955,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005106 name: longitudinal lateral lymphatic vessel +subset: human_subset +subset: mouse_subset synonym: "LLL" EXACT [TAO:0005106] xref: ZFA:0005106 is_a: UBERON:0004536 ! lymph vasculature @@ -380274,6 +402025,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005119 name: barbel primordium def: "A surface structure that will eventually grow to form a barbel. The primordium is rich in taste buds. The final location for taste buds present in the primordium is the distal tip of the mature barbel." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "barbel primordia" EXACT OMO:0003004 [TAO:0005119] xref: ZFA:0005119 is_a: UBERON:0003102 ! surface structure @@ -380290,6 +402043,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005122 name: dorsal axial hypoblast +subset: human_subset +subset: mouse_subset xref: ZFA:0005122 is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2001378 ! axial hypoblast @@ -380299,6 +402054,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005126 name: intestinal bulb epithelium def: "Intestinal epithelium which lines the lumen of the intestinal bulb." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005126 is_a: UBERON:0001277 ! intestinal epithelium relationship: part_of UBERON:2001076 ! intestinal bulb @@ -380308,6 +402065,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005135 name: primary dental epithelium def: "Epithelium that surrounds a primary tooth. This epithelium is committed to formation of replacement teeth." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "pharyngeal tooth epithelium" EXACT [TAO:0005135] synonym: "primary tooth epithelium" EXACT [TAO:0005135] xref: ZFA:0005135 @@ -380326,6 +402085,8 @@ replaced_by: UBERON:0011692 id: UBERON:2005144 name: ampullary nerve def: "A branch of the 8th cranial nerve that innervates the cristae ampullaris." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005144 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011779 ! nerve of head region @@ -380336,6 +402097,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005149 name: distal epidermal cap of regenerating fin/limb def: "Part of regeneration epithelium at the tip of the fin/limb [ZFA,modified]." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: TAO:0005149 xref: ZFA:0005149 is_a: UBERON:0007567 ! regenerating anatomical structure @@ -380345,6 +402108,8 @@ relationship: part_of UBERON:2001389 ! regeneration epithelium of fin/limb id: UBERON:2005150 name: basal regeneration epithelium of regenerating fin/limb def: "Layer of the wound epidermis that surrounds the blastema in the fin or limb[ZFA,modified]." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "basal wound epidermis" EXACT [TAO:0005150] xref: TAO:0005150 xref: ZFA:0005150 @@ -380371,6 +402136,8 @@ is_obsolete: true id: UBERON:2005170 name: extrahepatic duct def: "Bile duct that collects from the intrahepatic ducts and feeds into the common bile duct." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005170 is_a: UBERON:0002394 ! bile duct relationship: part_of UBERON:0005171 ! hepatic duct @@ -380762,6 +402529,8 @@ is_obsolete: true id: UBERON:2005219 name: choroid plexus vascular circuit def: "Cranial vasculature where the posterior cerebral veins and the trans-choroid plexus branch form a circuit around the 4th ventricle choroid plexus." [ZFIN:ZDB-PUB-080908-11] +subset: human_subset +subset: mouse_subset synonym: "choroid vascular circuit" RELATED [TAO:0005219] synonym: "CVC" EXACT [TAO:0005219] xref: ZFA:0005219 @@ -380772,6 +402541,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005220 name: larval melanophore stripe +subset: human_subset +subset: mouse_subset xref: ZFA:0005220 is_a: UBERON:2001463 ! melanophore stripe property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -380779,6 +402550,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005221 name: dorsal larval melanophore stripe +subset: human_subset +subset: mouse_subset xref: ZFA:0005221 is_a: UBERON:2005220 ! larval melanophore stripe property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -380786,6 +402559,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005222 name: ventral larval melanophore stripe +subset: human_subset +subset: mouse_subset xref: ZFA:0005222 is_a: UBERON:2005220 ! larval melanophore stripe property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -380793,6 +402568,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005223 name: lateral larval melanophore stripe +subset: human_subset +subset: mouse_subset xref: ZFA:0005223 is_a: UBERON:2005220 ! larval melanophore stripe property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -380800,6 +402577,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005224 name: yolk larval melanophore stripe +subset: human_subset +subset: mouse_subset xref: ZFA:0005224 is_a: UBERON:2005220 ! larval melanophore stripe property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -380949,6 +402728,8 @@ replaced_by: CL:0005014 id: UBERON:2005245 name: inter-parietal joint def: "Fibrous joint connecting the parietal bones." [ZFA:ZDB-PUB-060323-12] +subset: human_subset +subset: mouse_subset synonym: "sagittal suture" RELATED [TAO:0005245] xref: ZFA:0005607 is_a: UBERON:0002209 ! fibrous joint @@ -380979,6 +402760,8 @@ is_obsolete: true [Term] id: UBERON:2005248 name: trans-choroid plexus branch +subset: human_subset +subset: mouse_subset synonym: "TCB" EXACT [TAO:0005248] xref: ZFA:0005248 is_a: UBERON:0001638 ! vein @@ -380999,6 +402782,8 @@ consider: ZFA:0005608 id: UBERON:2005256 name: intervillus pockets def: "A portion of tissue formed between the base of the intestinal villi that is part of the intestinal epithelium where intestinal stem cells are located. In the intestine no crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips." [ZFIN:ZDB-PUB-050209-3] +subset: human_subset +subset: mouse_subset xref: ZFA:0005256 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001277 ! intestinal epithelium @@ -381008,6 +402793,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005259 name: continuous capillary def: "Capillary that has endothelial cells that provide an uninterrupted lining, and only allow small molecules, like water and ions to diffuse through tight junctions which leave gaps of unjoined membrane which are called intercellular clefts." [Wikipedia:Capillary#Types] +subset: human_subset +subset: mouse_subset synonym: "continuous blood vessel endothelium" BROAD [] synonym: "continuous blood vessel endothelium" EXACT [ZFA:0005259] synonym: "continuous capillary vessel" EXACT [FMA:63195] @@ -381026,6 +402813,8 @@ property_value: external_definition "Blood vessel endothelium that has tight jun id: UBERON:2005260 name: fenestrated capillary def: "Capillary that has pores in the endothelial cells (60-80 nm in diameter) that are spanned by a diaphragm of radially oriented fibrils and allow small molecules and limited amounts of protein to diffuse." [Wikipedia:Capillary#Types, Wikipedia:Fenestra_(histology)] +subset: human_subset +subset: mouse_subset synonym: "fenestrated blood vessel endothelium" BROAD [ZFA:0005260] synonym: "fenestrated capillary vessel" EXACT [FMA:63196] xref: FMA:63196 @@ -381042,6 +402831,8 @@ property_value: external_definition "Blood vessel endothelium that has pores tha [Term] id: UBERON:2005264 name: supraoccipital-parietal joint +subset: human_subset +subset: mouse_subset xref: ZFA:0005609 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -381055,6 +402846,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005265 name: hyomandibula-opercle joint def: "Synovial joint that articulates the hyomandibula and the opercle." [ZFIN:CVS] +subset: human_subset +subset: mouse_subset xref: ZFA:0005626 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -381070,6 +402863,8 @@ creation_date: 2012-04-09T06:34:33Z id: UBERON:2005266 name: pterotic fossa def: "Fossa on the pterotic where the hyomandibula articulates." [ZFIN:ZDB-PUB-961014-192] +subset: human_subset +subset: mouse_subset xref: ZFA:0005630 is_a: UBERON:0004704 ! bone fossa relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 @@ -381080,6 +402875,8 @@ creation_date: 2012-04-09T06:50:18Z id: UBERON:2005267 name: erector muscle def: "Muscle that moves parts of the body in a superior direction to an erect position. Antagonistic to depressor muscle." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005267 is_a: UBERON:0001134 ! skeletal muscle tissue property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -381089,6 +402886,8 @@ id: UBERON:2005268 name: preopercle horizontal limb-symplectic joint def: "Joint that articulates the posterior edge of the preopercle horizontal limb with the symplectic." [ZFIN:curator] comment: In ZFA, is a type of fibrous joint. May need to stay more general in TAO. +subset: human_subset +subset: mouse_subset xref: ZFA:0005631 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -381104,6 +402903,8 @@ creation_date: 2012-04-09T07:25:19Z id: UBERON:2005269 name: hypophyseal fenestra def: "Space enclosed by the trabeculae cranii. The anterior tip of the notochord extends into the posterior region of the hypophyseal fenestra." [ZFIN:ZDB-PUB-961014-192] +subset: human_subset +subset: mouse_subset xref: ZFA:0005625 is_a: UBERON:0005744 ! bone foramen relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 @@ -381114,6 +402915,8 @@ creation_date: 2012-04-09T07:33:26Z id: UBERON:2005270 name: depressor muscle def: "A muscle that moves body parts into an inferior direction or lowered position. Antagonistic to erector muscle." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005270 is_a: UBERON:0001134 ! skeletal muscle tissue property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -381122,6 +402925,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005272 name: immature gonad def: "Immature reproductive tissue that has not undergone final maturation into either testis or ovary. During gonadal development, the gonad may be transiently intersexual where there is a parallel presence of both oocytes and spermatocytes." [ZFIN:ZDB-PUB-070305-2] +subset: human_subset +subset: mouse_subset synonym: "juvenile gonad" EXACT [TAO:0005272] xref: ZFA:0005272 is_a: UBERON:0000481 ! multi-tissue structure @@ -381134,6 +402939,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005273 name: intestinal mucosal muscle def: "A thin layer of smooth muscle immediately beneath the base of the villi which permits the intestinal mucosa to dynamically move and fold." [ZFIN:ZDB-PUB-090217-11] +subset: human_subset +subset: mouse_subset synonym: "intestinal lamina muscularis mucosae" RELATED [http:www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html] xref: ZFA:0005273 is_a: UBERON:0004221 ! intestine smooth muscle @@ -381144,6 +402951,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005275 name: hyomandibular foramen def: "Foramen in the hyomandibula that allows passage of the anterior lateral line nerve and the facial nerve (cranial nerve VII)." [ZFIN:ZDB-PUB-961014-192] +subset: human_subset +subset: mouse_subset xref: ZFA:0005629 is_a: UBERON:0005744 ! bone foramen relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 @@ -381154,6 +402963,8 @@ creation_date: 2012-04-09T07:39:00Z [Term] id: UBERON:2005276 name: inclinator muscle +subset: human_subset +subset: mouse_subset xref: ZFA:0005276 is_a: UBERON:0001134 ! skeletal muscle tissue property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -381162,6 +402973,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005278 name: preopercle vertical limb-hyomandibula joint def: "Joint that articulates the anterior edge of the preopercle vertical limb and the hyomandibula." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005632 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -381177,6 +402990,8 @@ creation_date: 2012-04-09T07:41:34Z id: UBERON:2005279 name: enteric circular muscle def: "Smooth muscle of the enteric muscle system in which the cells are aligned perpendicular to the lumen of the gut." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005279 is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of UBERON:2001324 ! enteric musculature @@ -381186,6 +403001,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005292 name: distal late tubule def: "Portion of the renal tubule which is just posterior to the distal early tubule." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005292 is_a: UBERON:0006553 ! renal duct relationship: part_of UBERON:0001231 ! nephron tubule @@ -381194,6 +403011,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005295 name: axial blood vessel +subset: human_subset +subset: mouse_subset xref: ZFA:0005295 is_a: UBERON:2001073 ! axial vasculature property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -381219,6 +403038,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005311 name: pronephric glomerular capsule epithelium def: "Simple squamous epithelium that lines the capsule of the pronephric glomerulus." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "pronephric parietal epithelial layer" EXACT [TAO:0005311] xref: ZFA:0005311 is_a: UBERON:0000487 ! simple squamous epithelium @@ -381257,6 +403078,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005319 name: intersegmental lymph vessel +subset: human_subset +subset: mouse_subset synonym: "islv" EXACT [TAO:0005319] xref: ZFA:0005319 is_a: UBERON:0004536 ! lymph vasculature @@ -381265,6 +403088,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005320 name: dorsal longitudinal lymphatic vessel +subset: human_subset +subset: mouse_subset synonym: "dllv" EXACT [TAO:0005320] xref: ZFA:0005320 is_a: UBERON:0004536 ! lymph vasculature @@ -381319,6 +403144,8 @@ is_obsolete: true id: UBERON:2005338 name: posterior recess def: "Posterior protrusion of the third ventricle." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "posterior recess of diencephalic ventricle" EXACT [TAO:0005338] xref: ZFA:0005338 is_a: UBERON:0000464 ! anatomical space @@ -381328,6 +403155,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005339 name: nucleus of the lateral recess +subset: human_subset +subset: mouse_subset xref: ZFA:0005339 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:2000324 ! caudal periventricular hypothalamus @@ -381336,6 +403165,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005340 name: nucleus of the posterior recess +subset: human_subset +subset: mouse_subset xref: ZFA:0005340 is_a: UBERON:0006568 ! hypothalamic nucleus relationship: part_of UBERON:2000324 ! caudal periventricular hypothalamus @@ -381344,6 +403175,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005341 name: medial longitudinal catecholaminergic tract +subset: human_subset +subset: mouse_subset synonym: "mlct" EXACT [TAO:0005341] xref: ZFA:0005341 is_a: UBERON:0002316 ! white matter @@ -381353,6 +403186,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005343 name: endohypothalamic tract def: "CNS white matter, axonal tract interconnecting catecholaminergic cell groups in the posterior tuberculum and hypothalamus." [ZFIN:ZDB-PUB-091221-28] +subset: human_subset +subset: mouse_subset xref: ZFA:0005343 is_a: UBERON:0002316 ! white matter property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -381360,6 +403195,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005344 name: preopticohypothalamic tract +subset: human_subset +subset: mouse_subset xref: ZFA:0005344 is_a: UBERON:0002316 ! white matter property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -381369,6 +403206,8 @@ id: UBERON:2005346 name: extrapancreatic duct def: "Portion of the pancreatic duct, external to the pancreas body that connects the pancreas with the hepatopancreatic ampulla." [ZFIN:ZDB-PUB-050623-3] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: ZFA:0005346 is_a: UBERON:0003928 ! digestive system duct is_a: UBERON:0004119 ! endoderm-derived structure @@ -381597,6 +403436,8 @@ relationship: develops_from UBERON:2205385 ! dorsal fin proximal radial cartilag id: UBERON:2005409 name: pars superior ear def: "The dorsal part of the ear. Comprises the three semicircular canals, which connect to the utricle." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005409 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001846 ! internal ear @@ -381606,6 +403447,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005410 name: pars inferior ear def: "The ventral portion of the ear. It contains the saccule and the laguena which are the primary auditory organs." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005410 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001846 ! internal ear @@ -381623,6 +403466,8 @@ replaced_by: UBERON:0013764 id: UBERON:2005412 name: transverse canal def: "Duct that crosses the midline connecting the sacculi." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005412 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0002105 ! vestibulo-auditory system @@ -381632,6 +403477,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005415 name: inner ear foramen def: "Foramen in the inner ear." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0005415 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005744 ! bone foramen @@ -381641,6 +403488,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005416 name: sacculoagenar foramen +subset: human_subset +subset: mouse_subset xref: ZFA:0005416 is_a: UBERON:2005415 ! inner ear foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -381649,6 +403498,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2007001 name: dorso-rostral cluster def: "Early-forming telencephalic neural cluster. Neurons of the dorso-rostral cluster (drc) extend axons to form the supra-optic tract (SOT) and the anterior commissure (AC). Ross et al., 1992." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "dorsorostral cluster" EXACT [TAO:0007001] synonym: "drc" EXACT [TAO:0007001] xref: ZFA:0007001 @@ -381661,6 +403512,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2007002 name: ventro-rostral cluster def: "Early-forming neural cluster located in the rostral diencephalon. At 19 h, axons arising from the vrc grow caudally to pioneer the tract of the postoptic commissure (TPOC). Ross et al., 1992." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "ventrorostral cluster" EXACT [TAO:0007002] synonym: "vrc" EXACT [TAO:0007002] xref: ZFA:0007002 @@ -381672,6 +403525,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2007003 name: ventro-caudal cluster def: "Early-forming neural cluster of the ventral midbrain. At 16 h, axons of the vcc grow caudally to pioneer the medial longitudinal fasciculus (MLF), which is part of the larger ventral longitudinal tract (VLT). Later, neurons from this cluster project axons rostrally into the tract of the post-optic commissure (TPOC). Ross et al., 1992." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "vcc" EXACT [TAO:0007003] synonym: "ventrocaudal cluster" EXACT [TAO:0007003] xref: ZFA:0007003 @@ -381682,6 +403537,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2007004 name: epiphysial cluster def: "Early-developing neuronal cluster of the epiphysis. By 24 hpf the pioneer axon of the dorsoventral diencephalic tract (DVDT) has arisen from the ec and grown ventrally. As this axon encounters axons of the TPOC, it makes a near-90 rostral turn and grows rostrally among axons of the TPOC growing in the opposite direction. Ross et al., 1992." [ZFIN:curator] +subset: human_subset +subset: mouse_subset synonym: "ec" EXACT [TAO:0007004] xref: ZFA:0007004 is_a: UBERON:0000479 ! tissue @@ -381694,6 +403551,7 @@ id: UBERON:2007005 name: hemal prezygapophysis alt_id: UBERON:2001380 def: "Hemal prezygapophyses are paired, anteromedially directed processes arising from the bases of hemal arches, ligamentously joined to the hemal postzygapophyses of the preceding vertebra. Posterior caudal vertebrae close to the caudal fin lack hemal prezygopophyses." [ZFIN:curator] +subset: mouse_subset synonym: "haemal prezygapophysis" EXACT [TAO:0007005] synonym: "hemal prezygopophysis" EXACT [TAO:0007005] xref: ZFA:0007005 @@ -381705,6 +403563,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007008 name: ventral intermandibularis anterior +subset: human_subset +subset: mouse_subset synonym: "ventral intermandibulari anterior" EXACT OMO:0003004 [TAO:0007008] xref: ZFA:0007008 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate @@ -381733,6 +403593,8 @@ replaced_by: UBERON:0011213 [Term] id: UBERON:2007012 name: lateral forebrain bundle +subset: human_subset +subset: mouse_subset xref: ZFA:0007012 is_a: UBERON:0002316 ! white matter property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -381741,6 +403603,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2007013 name: preplacodal ectoderm def: "Non neural ectoderm that surrounds the presumptive neural plate and gives rise to neurogenic placodes." [ZFIN:curator] +subset: human_subset +subset: mouse_subset xref: ZFA:0007013 is_a: UBERON:0005497 ! non-neural ectoderm property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -381748,6 +403612,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007014 name: anterior presumptive neural plate +subset: human_subset +subset: mouse_subset xref: ZFA:0007014 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -381757,6 +403623,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007015 name: posterior presumptive neural plate +subset: human_subset +subset: mouse_subset xref: ZFA:0007015 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -381766,6 +403634,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007023 name: posterior neural keel +subset: human_subset +subset: mouse_subset xref: ZFA:0007023 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -381776,6 +403646,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007024 name: anterior neural keel +subset: human_subset +subset: mouse_subset xref: ZFA:0007024 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -381786,6 +403658,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007025 name: midbrain neural keel +subset: human_subset +subset: mouse_subset xref: ZFA:0007025 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -381796,6 +403670,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007026 name: forebrain neural keel +subset: human_subset +subset: mouse_subset xref: ZFA:0007026 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -381806,6 +403682,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007027 name: forebrain midbrain boundary neural keel +subset: human_subset +subset: mouse_subset xref: ZFA:0007027 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction @@ -381816,6 +403694,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007028 name: spinal cord neural keel +subset: human_subset +subset: mouse_subset xref: ZFA:0007028 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -381825,6 +403705,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007029 name: hindbrain neural keel +subset: human_subset +subset: mouse_subset xref: ZFA:0007029 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -381835,6 +403717,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007030 name: posterior neural rod +subset: human_subset +subset: mouse_subset xref: ZFA:0007030 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -381845,6 +403729,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007031 name: anterior neural rod +subset: human_subset +subset: mouse_subset xref: ZFA:0007031 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -381855,6 +403741,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007032 name: midbrain neural rod +subset: human_subset +subset: mouse_subset xref: ZFA:0007032 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -381865,6 +403753,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007033 name: forebrain midbrain boundary neural rod +subset: human_subset +subset: mouse_subset xref: ZFA:0007033 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction @@ -381875,6 +403765,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007034 name: forebrain neural rod +subset: human_subset +subset: mouse_subset xref: ZFA:0007034 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -381885,6 +403777,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007035 name: spinal cord neural rod +subset: human_subset +subset: mouse_subset xref: ZFA:0007035 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -381894,6 +403788,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007036 name: hindbrain neural rod +subset: human_subset +subset: mouse_subset xref: ZFA:0007036 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -381904,6 +403800,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007040 name: forebrain midbrain boundary neural tube +subset: human_subset +subset: mouse_subset xref: ZFA:0007040 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction @@ -381914,6 +403812,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007041 name: forebrain neural tube +subset: human_subset +subset: mouse_subset xref: ZFA:0007041 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -381924,6 +403824,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007042 name: spinal cord neural tube +subset: human_subset +subset: mouse_subset xref: ZFA:0007042 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -381933,6 +403835,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007043 name: hindbrain neural tube +subset: human_subset +subset: mouse_subset xref: ZFA:0007043 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue @@ -381943,6 +403847,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007045 name: midbrain hindbrain boundary neural keel +subset: human_subset +subset: mouse_subset xref: ZFA:0007045 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction @@ -381953,6 +403859,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007046 name: midbrain hindbrain boundary neural rod +subset: human_subset +subset: mouse_subset xref: ZFA:0007046 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction @@ -381963,6 +403871,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007047 name: midbrain hindbrain boundary neural tube +subset: human_subset +subset: mouse_subset xref: ZFA:0007047 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction @@ -381973,6 +403883,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007048 name: ventral intermandibularis posterior +subset: human_subset +subset: mouse_subset synonym: "ventral intermandibulari posterior" EXACT OMO:0003004 [TAO:0007048] xref: ZFA:0007048 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate @@ -381982,6 +403894,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007050 name: constrictor dorsalis +subset: human_subset +subset: mouse_subset xref: ZFA:0007050 is_a: UBERON:0011648 ! jaw muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -381989,6 +403903,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007051 name: ventral interhyoideus +subset: human_subset +subset: mouse_subset synonym: "ventral interhyoidei" EXACT OMO:0003004 [TAO:0007051] xref: ZFA:0007051 is_a: UBERON:0005493 ! hyoid muscle @@ -381998,6 +403914,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2007052 name: hyohyoideus def: "Is a hyoid muscle that inserts at the most anterior basibranchial and also at the posterior ends of the ceratohyals and functions in jaw closure." [ZFIN:ZDB-PUB-020703-2] +subset: human_subset +subset: mouse_subset synonym: "hyohyoidei" EXACT OMO:0003004 [TAO:0007052] xref: ZFA:0007052 is_a: UBERON:0005493 ! hyoid muscle @@ -382007,6 +403925,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2007053 name: dorsal adductor hyomandibulae def: "Is a hyoid muscle that attaches to the dorsomedial faces of the hyosymplectics." [ZFIN:ZDB-PUB-020703-2] +subset: human_subset +subset: mouse_subset xref: ZFA:0007053 is_a: UBERON:0005493 ! hyoid muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -382014,6 +403934,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007054 name: pillar of the anterior semicircular canal +subset: human_subset +subset: mouse_subset synonym: "anterior hub of the semicircular canal" EXACT [TAO:0007054] synonym: "anterior pillar" EXACT [TAO:0007054] synonym: "anterior pillar of the semicircular canal" EXACT [TAO:0007054] @@ -382041,6 +403963,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007059 name: neurogenic field +subset: human_subset +subset: mouse_subset xref: ZFA:0007059 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure @@ -382050,6 +403974,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007060 name: dorsolateral field +subset: human_subset +subset: mouse_subset xref: ZFA:0007060 is_a: UBERON:2007059 ! neurogenic field property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -382057,6 +403983,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007061 name: epibranchial field +subset: human_subset +subset: mouse_subset xref: ZFA:0007061 is_a: UBERON:2007059 ! neurogenic field property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -382064,6 +403992,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007062 name: olfactory field +subset: human_subset +subset: mouse_subset synonym: "olfactory fields" EXACT OMO:0003004 [TAO:0007062] xref: ZFA:0007062 is_a: UBERON:2007059 ! neurogenic field @@ -382114,6 +404044,8 @@ relationship: part_of UBERON:4440010 ! pelvic fin radial skeleton id: UBERON:2100623 name: basipterygium element def: "Endochondral element that is paired and supports the pelvic fin. The basipterygium has a posteromedial process called the ischiac process (Wietzman 1962)." [TAO:wd] +subset: human_subset +subset: mouse_subset synonym: "basipterygia" RELATED OMO:0003004 [TAO:0000623] synonym: "basipterygium" RELATED [] synonym: "basiptrygium ischiatique" RELATED [PSPUB:0000145] @@ -382874,6 +404806,8 @@ relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue id: UBERON:3000002 name: alary cartilage def: "Paired, cup-shaped cartilage that are dorsal to the septomaxillae and anterior to the oblique cartilage. The anterior, convex face of each alary cartilage is synchondrotically fused to the superior prenasal cartilage and the ventral edge is fused to the superior margin of the crista intermedia." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "alinasal cartilage" RELATED [UBERON:3000002] synonym: "cartilago alaris" RELATED [UBERON:3000002] synonym: "cartilago alaris nasi" RELATED [UBERON:3000002] @@ -382891,6 +404825,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000003 name: alary process of premaxilla def: "Dorsal process that extends toward the nasal bone. The posterior (inner) face of each alary process is concave and is invested dorsomedially by the superior prenasal cartilage and ventromedially by the inferior prenasal cartilage." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "dorsal process of premaxilla" RELATED [UBERON:3000003] synonym: "pars dorsalis of premaxilla" RELATED [UBERON:3000003] synonym: "pars facialis of premaxilla" RELATED [UBERON:3000003] @@ -382909,6 +404845,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000006 name: alveolar foramen def: "Foramen for the R. alveolaris of Nerve VII and the alveolar artery." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "inferior dental foramen" RELATED [UBERON:3000006] is_a: UBERON:0011772 ! lower jaw opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -382917,6 +404855,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000012 name: angulosplenial coronoid process def: "Point of insertion of the adductor mandibulae musculature." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004530 ! bony projection is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000966 ! angulosplenial @@ -382926,6 +404866,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000015 name: anterior maxillary process def: "Process that extends anteriorly from the planum triangulare and invests the medial face of the pars facialis of the maxilla." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0006813 ! nasal skeleton @@ -382935,6 +404877,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000016 name: anterior nasal wall def: "Paired, vertical, and relatively straight plates that form the anterior limit of the nasal capsule." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "prenasal wall" RELATED [UBERON:3000016] synonym: "solum anterius" RELATED [UBERON:3000016] is_a: UBERON:0004121 ! ectoderm-derived structure @@ -382945,6 +404889,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000017 name: anterior process of pars palatina of maxilla +subset: human_subset +subset: mouse_subset is_a: UBERON:0004530 ! bony projection is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0004527 ! alveolar process of maxilla @@ -382954,6 +404900,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000018 name: anterior ramus of pterygoid def: "In a triradiate pterygoid, the process that extends anteriorly towards the maxilla." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "ramus maxillaris of pterygoid" RELATED [UBERON:3000018] is_a: UBERON:0004530 ! bony projection is_a: UBERON:0010313 ! neural crest-derived structure @@ -382963,6 +404911,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000020 name: anterolateral process of frontoparietal +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0011639 ! frontoparietal bone @@ -382971,6 +404921,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000022 name: antorbital process +subset: human_subset +subset: mouse_subset is_a: UBERON:0004530 ! bony projection is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000400 ! pars facialis of maxilla @@ -382994,6 +404946,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000032 name: auditory muscles +subset: human_subset +subset: mouse_subset is_a: UBERON:0002376 ! cranial muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383012,12 +404966,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000037 name: basicranial fenestra def: "Ventral opening of the neurocranium." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000038 name: basimandibulare +subset: human_subset +subset: mouse_subset is_a: UBERON:0000479 ! tissue is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0003278 ! skeleton of lower jaw @@ -383027,6 +404985,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000041 name: Bidder's organ def: "Anatomical structure which forms from an enlargement of the anterior portion of each gonad in all male bufonid larvae and consists of ovarian tissues." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000990 ! reproductive system @@ -383045,6 +405005,8 @@ replaced_by: UBERON:2000093 id: UBERON:3000050 name: braincase and auditory apparatus def: "The part of the skull that encloses the brain and surrounds the inner ear." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0010323 ! cranial skeletal system property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383052,6 +405014,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000051 name: braincase and otic capsule opening +subset: human_subset +subset: mouse_subset is_a: UBERON:0004705 ! fenestra relationship: part_of UBERON:3000050 ! braincase and auditory apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383059,12 +405023,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000052 name: braincase and otic capsule skeleton +subset: human_subset +subset: mouse_subset is_a: UBERON:3000050 ! braincase and auditory apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000057 name: canalis semicircularis anterior +subset: human_subset +subset: mouse_subset is_a: UBERON:0001840 ! semicircular canal relationship: part_of UBERON:0001842 ! posterior semicircular canal property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383073,6 +405041,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000059 name: capsular process def: "Narrow process of the skeletal support that projects forward." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:3000565 ! skeletal support for eminentia olfactoria @@ -383095,6 +405065,8 @@ is_obsolete: true id: UBERON:3000068 name: cartilago ectochoanalis def: "Lateral cartilaginous border of the fenestra endochoanalis." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton @@ -383103,6 +405075,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000069 name: cartilago infranarina +subset: human_subset +subset: mouse_subset is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton @@ -383112,6 +405086,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000074 name: cartilago orbitalis def: "Lateral wall of chondrocranial braincase between lamina orbitonasalis and pila metoptica." [AAO:LT] +subset: human_subset +subset: mouse_subset synonym: "dorsale randspange" RELATED [UBERON:3000074] is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton @@ -383120,6 +405096,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000078 name: cartilago prootico-occipitalis +subset: human_subset +subset: mouse_subset is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383127,6 +405105,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000079 name: cartilago retronarina +subset: human_subset +subset: mouse_subset is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton @@ -383136,12 +405116,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000085 name: cavum inferius def: "Accessory cavity located ventral to the cavum principale and cavum medius." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000086 name: cavum internasale +subset: human_subset +subset: mouse_subset is_a: UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383149,12 +405133,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000087 name: cavum medius def: "Small accessory cavity located between the cavum principale and cavum inferius." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000088 name: cavum praenasale +subset: human_subset +subset: mouse_subset is_a: UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383162,6 +405150,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000089 name: cavum principale def: "The largest part of the nasal cavity, containing the olfactory epithelium." [AAO:LAP] {comment="AAO:EJS"} +subset: human_subset +subset: mouse_subset is_a: UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383176,6 +405166,8 @@ id: UBERON:3000101 name: hyale def: "Anterior-lateral projections from the corpus of the hyoid apparatus." [PHENOSCAPE] comment: Found in Anura (frogs) only. +subset: human_subset +subset: mouse_subset synonym: "anterior cornua" EXACT [] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0010272 ! hyoid apparatus @@ -383185,6 +405177,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000110 name: crista contacta def: "Thin, horizontal ridge that extends medially from the corpus of the septomaxilla; it lays on the lamina inferior." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000645 ! corpus @@ -383193,6 +405187,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000111 name: crista dentalis of maxilla +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004527 ! alveolar process of maxilla @@ -383201,6 +405197,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000112 name: crista dentalis of premaxilla +subset: human_subset +subset: mouse_subset synonym: "dental ridge of premaxilla" RELATED [UBERON:3000112] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -383211,6 +405209,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000113 name: crista intermedia def: "Paired, oblique plates of cartilage located ventral to the alary cartilages. The dorsomedial margin of each crista intermedia is fused to the transitional zone between the septum nasi and the tectum nasi, whereas the ventrolateral margin bears two laminae, the lamina superior and the lamina inferior." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0006813 ! nasal skeleton @@ -383219,6 +405219,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000115 name: crista lateralis of premaxilla +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla @@ -383228,6 +405230,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000117 name: crista subnasalis def: "Ventral crest of the paries nasi." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "subnasal crest" RELATED [UBERON:3000117] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection @@ -383238,6 +405242,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000118 name: crista supraorbitalis def: "Short and blunt process that extends posteriorly from the posteromedial margin of the postnasal wall, on the anterodorsal corner of the orbit above the medial orbitonasal foramen." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0006813 ! nasal skeleton @@ -383255,6 +405261,8 @@ replaced_by: UBERON:0011823 id: UBERON:3000131 name: dilatatio alaris def: "Flange that extends ventrally from about the middle portion of the margo mandibularis." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "ventral flange of anterior ramus of pterygoid" RELATED [UBERON:3000131] is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure @@ -383271,6 +405279,8 @@ is_obsolete: true [Term] id: UBERON:3000141 name: endolymphatic system +subset: human_subset +subset: mouse_subset is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001846 ! internal ear @@ -383280,6 +405290,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000155 name: extremitas anterior def: "Large anterior outgrowth of the septomaxilla that is directed into the space between the alary cartilage and the lamina inferior." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "anterior ramus" RELATED [UBERON:3000155] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure @@ -383289,6 +405301,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000160 name: fenestra dorsalis nasi +subset: human_subset +subset: mouse_subset is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383296,6 +405310,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000161 name: fenestra endochoanalis def: "Opening on the ventral aspect of the nasal capsule. It contains the apertura nasalis interna." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "fenestra exochoanalis" RELATED [UBERON:3000161] is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383304,6 +405320,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000162 name: fenestra endonarina communis def: "Opening on the anterolateral aspect of the nasal capsule. It contains the apertura nasalis externa." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "apertura nasalis externa" RELATED [UBERON:3000162] synonym: "fenestra narina" RELATED [UBERON:3000162] synonym: "narial fenestra" RELATED [UBERON:3000162] @@ -383314,6 +405332,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000164 name: fenestra lateralis nasi def: "Opening on the lateral side of the nasal capsule." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "fenestra infraconchalis" RELATED [UBERON:3000164] synonym: "fenestra retronarina" RELATED [UBERON:3000164] is_a: UBERON:3000316 ! nasal opening @@ -383323,6 +405343,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000166 name: fenestra nasobasalis def: "Small opening at the anterior tip of the nasal capsule, on the floor of the cavum inferius. It is located medially to the base of the inferior prenasal cartilage and serves for the passage of the ramus medialis narium and arteria orbitonasalis." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "basal fenestra" RELATED [UBERON:3000166] synonym: "fenestra basalis nasi" RELATED [UBERON:3000166] synonym: "foramen apicale" RELATED [UBERON:3000166] @@ -383335,12 +405357,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000167 name: fenestra nasolateralis def: "Elongated opening located on the lateral side of the nasal capsule." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000170 name: fenestra precerebralis +subset: human_subset +subset: mouse_subset is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383348,6 +405374,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000171 name: fenestra prechoanalis def: "Large opening of the nasal floor anterior to the fenestra endochoanalis." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383363,6 +405391,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000178 name: footplate of pars media plectri def: "Independent, horizontal bar of cartilage located on the anterior part of the fenestra ovalis in front of the pars interna plectri." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "fenestral plate" RELATED [UBERON:3000178] synonym: "interstapediale" RELATED [UBERON:3000178] synonym: "otostapes" RELATED [UBERON:3000178] @@ -383376,6 +405406,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000179 name: foramen acusticum +subset: human_subset +subset: mouse_subset synonym: "acoustic foramen" RELATED [UBERON:3000179] is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383383,6 +405415,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000180 name: foramen acusticum anterius +subset: human_subset +subset: mouse_subset is_a: UBERON:3000051 ! braincase and otic capsule opening relationship: part_of UBERON:3000179 ! foramen acusticum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383390,6 +405424,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000181 name: foramen acusticum maius +subset: human_subset +subset: mouse_subset is_a: UBERON:3000051 ! braincase and otic capsule opening relationship: part_of UBERON:3000180 ! foramen acusticum anterius property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383397,6 +405433,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000182 name: foramen acusticum minus +subset: human_subset +subset: mouse_subset is_a: UBERON:3000051 ! braincase and otic capsule opening relationship: part_of UBERON:3000180 ! foramen acusticum anterius property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383404,6 +405442,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000183 name: foramen acusticum posterius +subset: human_subset +subset: mouse_subset is_a: UBERON:3000051 ! braincase and otic capsule opening relationship: part_of UBERON:3000179 ! foramen acusticum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383411,6 +405451,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000185 name: foramen endolymphaticum +subset: human_subset +subset: mouse_subset synonym: "endolymphatic foramen" RELATED [UBERON:3000185] is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383418,12 +405460,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000189 name: foramen orbitonasale laterale +subset: human_subset +subset: mouse_subset is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000190 name: foramen orbitonasale mediale +subset: human_subset +subset: mouse_subset synonym: "canalis orbitonasalis" RELATED [UBERON:3000190] synonym: "canalis orbitonasalis medialis" RELATED [UBERON:3000190] synonym: "foramen orbitonasale" RELATED [UBERON:3000190] @@ -383433,12 +405479,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000192 name: foramen perilymphaticum +subset: human_subset +subset: mouse_subset is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000193 name: foramen perilymphaticum accessorium +subset: human_subset +subset: mouse_subset is_a: UBERON:3000051 ! braincase and otic capsule opening relationship: part_of UBERON:3000192 ! foramen perilymphaticum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383446,6 +405496,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000195 name: foramen perilymphaticus inferius +subset: human_subset +subset: mouse_subset synonym: "foramen pro aquaeducto cochleae" RELATED [UBERON:3000195] synonym: "inferior perilymphatic foramen" RELATED [UBERON:3000195] is_a: UBERON:3000051 ! braincase and otic capsule opening @@ -383462,12 +405514,16 @@ is_obsolete: true id: UBERON:3000209 name: frontoparietal fontanelle def: "Dorsal opening of the neurocranium." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000224 name: hyobranchial muscle +subset: human_subset +subset: mouse_subset is_a: UBERON:0002376 ! cranial muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383475,6 +405531,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000226 name: hyolaryngeal complex def: "Complex formed by two units, the hyoid and laryngeal apparatuses, which are both derived from the larval hyobranchial skeleton." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0008895 ! splanchnocranium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383483,6 +405541,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000234 name: inferior prenasal cartilage def: "Elongate cartilage that extends anteroventrally from the solum nasi to abut the ventral portion of the posterior aspect of the alary process of the premaxilla. It was first described by Wiedersheim in 1876." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "inferior prenasal process" RELATED [UBERON:3000234] synonym: "processus prenasalis inferior" RELATED [UBERON:3000234] synonym: "processus prenasalis inferior lateralis" RELATED [UBERON:3000234] @@ -383495,6 +405555,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000237 name: infrarostral cartilage def: "Larval lower jaw lies anterior to Meckels cartilage." [AAO:EJS] +subset: human_subset +subset: mouse_subset synonym: "infralabial cartilage" RELATED [UBERON:3000237] synonym: "mentomeckelian cartilage" RELATED [UBERON:3000237] is_a: UBERON:0003933 ! cranial cartilage @@ -383507,6 +405569,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000254 name: lamella alaris def: "Dorsal plate of the squamosal." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "horizontal arm of squamosal" RELATED [UBERON:3000254] is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure @@ -383516,6 +405580,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000255 name: lamina anterior of pars facialis +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000400 ! pars facialis of maxilla @@ -383525,6 +405591,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000259 name: lamina inferior def: "Lateral expansion of the crista intermedia that serves as the floor of the cavum medium." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "lamina inferior cristae intermediae" RELATED [UBERON:3000259] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -383535,6 +405603,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000260 name: lamina nariochoanalis def: "Free, dorsal margin of the lamina inferior." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006332 ! nasal capsule @@ -383544,6 +405614,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000263 name: lamina precerebralis def: "Posterior face of septum nasi." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton @@ -383553,6 +405625,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000264 name: lamina superior def: "Lateral expansion of the crista intermedia that serves as the roof of the cavum medium." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "lamina superior cristae intermediae" RELATED [UBERON:3000264] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure @@ -383571,6 +405645,8 @@ is_obsolete: true id: UBERON:3000280 name: margo mandibularis of pterygoid def: "Ventrally directed margin that connects the anterior and posterior rami of the pterygoid." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010389 ! pterygoid bone @@ -383580,6 +405656,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000281 name: margo orbitalis of maxilla def: "Dorsal margin of the maxilla between the frontal and zygomatico-maxillary processes." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002397 ! maxilla @@ -383589,6 +405667,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000282 name: margo orbitalis of pterygoid def: "Margin that connects the anterior and medial rami of the pterygoid." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010389 ! pterygoid bone @@ -383598,6 +405678,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000283 name: margo orbitalis of squamosal def: "Anterior margin of the squamosal that takes part in the formation of the orbit." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000254 ! lamella alaris @@ -383607,6 +405689,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000284 name: margo tympanicus of pterygoid def: "Margin that connects the posterior and medial rami of the pterygoid." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010389 ! pterygoid bone @@ -383616,6 +405700,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000288 name: maxillopalatine def: "A compound bone consisting of maxilla and palatine, can also contain a prefrontal and/or lacrimal; present in adult Gymnophiona." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008193 ! pneumatized bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011597 ! bone of upper jaw @@ -383627,6 +405713,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000290 name: medial inferior prenasal cartilage +subset: human_subset +subset: mouse_subset is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton @@ -383636,6 +405724,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000291 name: medial orbitonasal foramen def: "Opening on the postnasal wall for the medial branch (= ramus medialis nasi) of the ophthalmicus nerve." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383643,6 +405733,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000292 name: medial ramus of pterygoid def: "In a triradiate pterygoid, the process that extends medially towards the otic capsule." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "ramus interior of pterygoid" RELATED [UBERON:3000292] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -383653,6 +405745,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000294 name: median prenasal process def: "Anterior projection of the septum nasi that protrudes through the anterior nasal wall." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "processus prenasalis medius" RELATED [UBERON:3000294] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection @@ -383662,6 +405756,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000295 name: median symphysis +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001709 ! upper jaw region property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383669,12 +405765,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000309 name: narial muscles +subset: human_subset +subset: mouse_subset is_a: UBERON:0002376 ! cranial muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000316 name: nasal opening +subset: human_subset +subset: mouse_subset is_a: UBERON:0006332 ! nasal capsule property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383682,6 +405782,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000323 name: nasopremaxilla def: "A compound bone consisting of premaxilla, nasal and sometimes septomaxilla in adult members of Caeciliidae and Typhlonectidae." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011597 ! bone of upper jaw relationship: part_of UBERON:0003277 ! skeleton of upper jaw @@ -383691,6 +405793,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000329 name: oblique cartilage def: "Semi-circular cartilaginous sheet that lies lateral to the side of the septum nasi." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "cartilago obliqua" RELATED [UBERON:3000329] synonym: "cartilago obliqua nasi" RELATED [UBERON:3000329] synonym: "cartilago obliquo" RELATED [UBERON:3000329] @@ -383704,6 +405808,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000332 name: oculomotor foramen +subset: human_subset +subset: mouse_subset synonym: "nerve foramen III" EXACT [] is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383711,12 +405817,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000333 name: olfactory foramen +subset: human_subset +subset: mouse_subset is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000341 name: optic fenestra +subset: human_subset +subset: mouse_subset is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383724,6 +405834,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000344 name: orbitonasal foramen def: "Foramen that forms a passage for one of the branches of the trigeminal nerve into the nasal region." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383739,6 +405851,8 @@ replaced_by: UBERON:2001805 id: UBERON:3000348 name: os basale def: "A bone that forms both the floor of the braincase and the posterior part of the skull." [UBERON:cjm] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001474 ! bone element relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -383762,6 +405876,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000364 name: otic plate of pterygoid def: "Osseous expansion of the posterior and medial rami of the pterygoid." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010389 ! pterygoid bone @@ -383779,6 +405895,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000367 name: otic ramus of squamosal def: "Ramus (process) that extends medially toward the otic capsule." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "posterior ramus" RELATED [UBERON:3000367] synonym: "ramus paroticus" RELATED [UBERON:3000367] is_a: UBERON:0010313 ! neural crest-derived structure @@ -383790,6 +405908,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000368 name: otoccipital def: "Fused prootic and exoccipital bones." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "otooccipital" EXACT [] is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton @@ -383814,6 +405934,8 @@ is_obsolete: true [Term] id: UBERON:3000375 name: palatine process of the pars facialis of the maxilla +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000400 ! pars facialis of maxilla @@ -383839,6 +405961,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000381 name: paranasal commissure def: "Cartilaginous bridge that extends posteriorly to the anterolateral corner of the posterior nasal wall." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "commissura lateralis nasi" RELATED [UBERON:3000381] synonym: "connection between lamina nariochoanalis and postnasal wall" RELATED [UBERON:3000381] synonym: "processus lingularis" RELATED [UBERON:3000381] @@ -383850,6 +405974,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000384 name: parasagittal crest +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0011639 ! frontoparietal bone @@ -383859,6 +405985,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000386 name: cultriform process def: "Process that extends anteriorly from the orbitotemporal region." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "pars medialis" RELATED [UBERON:3000386] synonym: "rostrum" RELATED [UBERON:3000386] is_a: UBERON:0004121 ! ectoderm-derived structure @@ -383870,6 +405998,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000387 name: subotic alae def: "Paired processes extending lateraly from the posterior body of the parasphenoid that, when present, support the otic capsules ventrally." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "processus lateralis" RELATED [UBERON:3000387] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -383879,6 +406009,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000388 name: parasphenoid tooth +subset: human_subset +subset: mouse_subset synonym: "parasphenoid teeth" RELATED [UBERON:3000388] is_a: UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0003672 ! dentition @@ -383888,6 +406020,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000389 name: paries nasi def: "Paired, elongate, ventrolaterally-orieted cartilaginous structures that extend to the premaxilla-maxilla articulation." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton @@ -383896,6 +406030,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000393 name: pars amphibiorum +subset: human_subset +subset: mouse_subset is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth @@ -383905,6 +406041,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000394 name: pars articularis of mandibular arch def: "Posterior end of Meckel's cartilage that forms the articular head of the mandibular arch." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0003107 ! Meckel's cartilage @@ -383913,6 +406051,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000395 name: pars basilaris +subset: human_subset +subset: mouse_subset is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth @@ -383938,6 +406078,8 @@ replaced_by: UBERON:0034898 [Term] id: UBERON:3000399 name: pars externa plectri +subset: human_subset +subset: mouse_subset synonym: "extracolumellare" RELATED [UBERON:3000399] synonym: "extrapediale" RELATED [UBERON:3000399] synonym: "extraplectral" RELATED [UBERON:3000399] @@ -383953,6 +406095,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000400 name: pars facialis of maxilla +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002397 ! maxilla @@ -383961,6 +406105,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000401 name: pars facialis of maxillopalatine +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000288 ! maxillopalatine @@ -383969,6 +406115,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000405 name: pars inferior of labyrinth +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001846 ! internal ear @@ -383978,6 +406126,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000406 name: pars interna plectri def: "Plate-like structure that lies in the fenestra ovalis. It arises within the membrana opercularis in the posterior part of the fenestra." [AOO:LAP] +subset: human_subset +subset: mouse_subset synonym: "operculum auris" RELATED [UBERON:3000406] synonym: "operculum fenestrae ovalis" RELATED [UBERON:3000406] is_a: UBERON:0000064 ! organ part @@ -383988,6 +406138,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000408 name: pars media plectri +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000443 ! plectral apparatus @@ -384014,6 +406166,8 @@ replaced_by: UBERON:0034900 id: UBERON:3000428 name: perilymphatic system def: "Consists of enlarged cistern against which the operculum and footplate of the columella rest in the oval window. Together with the endolymphatic systems comprises the membranous labryinth of the inner ear. Duellman and Trueb 1994." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001032 ! sensory system relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384022,6 +406176,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000431 name: pila antoptica def: "A strut of cartilage extending dorsally from the basal plate and with other similar cartilages forming the sides of the brain case. The pila antoptica is posterior to pila metoptica together with which it may enclose the foramen for the ocular motor nerve and opthalmica magna artery." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton @@ -384031,6 +406187,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000432 name: pila metoptica def: "A strut of cartilage extending dorsally from the basal plate and with other similar cartilages forming the sides of the brain case. The pila metoptica is anterior to pila antoptica together with which it may enclose the foramen for the ocular motor nerve and opthalmica magna artery. Anterior to the pila antoptica is the pila preoptica (another pillar of cartilage) between these two cartilages emerges the optic and trochlear nerves." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton @@ -384039,6 +406197,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000433 name: pineal foramen +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0011639 ! frontoparietal bone @@ -384047,6 +406207,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000434 name: planum antorbitale +subset: human_subset +subset: mouse_subset is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton @@ -384055,6 +406217,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000437 name: planum conchale +subset: human_subset +subset: mouse_subset is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton @@ -384063,6 +406227,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000438 name: planum internasale +subset: human_subset +subset: mouse_subset is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton @@ -384072,6 +406238,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000440 name: planum terminale def: "Vertical plate of cartilage that is fused posterodorsally to the oblique cartilage and anteriorly to the lamina inferior." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "pars terminalis" RELATED [UBERON:3000440] synonym: "terminal plate" RELATED [UBERON:3000440] is_a: UBERON:0000064 ! organ part @@ -384083,6 +406251,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000441 name: planum triangulare def: "Cartilaginous, distal expansion of the lamina orbitonasalis that invests the pars facialis of the maxilla medially." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton @@ -384092,6 +406262,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000443 name: plectral apparatus def: "Complex sound-conducting anatomical structure." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001686 ! auditory ossicle bone relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384099,6 +406271,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000446 name: posterior condyle +subset: human_subset +subset: mouse_subset is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000515 ! pseudoangular @@ -384108,6 +406282,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000448 name: posterior maxillary process def: "Process that extends posteriorly from the planum triangulare and invests the maxilla laterally and the anterior ramus of the pterygoid medially." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0006813 ! nasal skeleton @@ -384116,6 +406292,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000449 name: posterior maxillary process dorsal process +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:3000448 ! posterior maxillary process @@ -384124,6 +406302,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000450 name: posterior mental process +subset: human_subset +subset: mouse_subset is_a: UBERON:0004529 ! anatomical projection is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0003278 ! skeleton of lower jaw @@ -384133,6 +406313,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000451 name: posterior ramus of pterygoid def: "In a triradiate pterygoid, the process that extends posterolaterally towards the jaw articulation." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010389 ! pterygoid bone @@ -384141,6 +406323,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000453 name: posterolateral vomerine process +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002396 ! vomer @@ -384150,6 +406334,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000454 name: postnasal wall def: "Paired, anteriorly concave structures that form the posterior limit of nasal capsule. It consists of two parts: a ventral piece, the lamina orbitonasalis, and a dorsal plate that is part of the tectum nasi." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "posterior wall of nasal capsule" BROAD [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010363 ! endochondral element @@ -384160,6 +406346,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000459 name: prearticular coronoid process def: "Point of insertion of the masticatory musculature." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011637 ! prearticular bone @@ -384176,6 +406364,8 @@ replaced_by: UBERON:2001626 [Term] id: UBERON:3000467 name: preorbital process of the pars facialis of the maxilla +subset: human_subset +subset: mouse_subset synonym: "preorbital process" EXACT [] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -384199,6 +406389,8 @@ is_obsolete: true id: UBERON:3000486 name: processus ascendens plectri def: "Cartilaginous or ligamentous connection between the pars externa plectri and the crista parotica." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "laterohyale" RELATED [UBERON:3000486] synonym: "processus ascendens columellae" RELATED [UBERON:3000486] synonym: "processus dorsalis columellae" RELATED [UBERON:3000486] @@ -384213,6 +406405,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000492 name: processus infrafenestralis def: "Posterior part of the corpus of the septomaxilla; the posterior surface of the processus infrafenestralis is in contact with the oblique cartilage." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "dorsal crest" RELATED [UBERON:3000492] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -384222,6 +406416,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000493 name: processus internus of pseudoangular +subset: human_subset +subset: mouse_subset synonym: "processus internus" BROAD [] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -384232,6 +406428,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000494 name: processus lingualis of pterygoid def: "Dorsolateral process of the of the medial ramus of the pterygoid." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000292 ! medial ramus of pterygoid @@ -384241,6 +406439,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000500 name: processus posterior of maxilla def: "Posterior, toothless portion of the maxilla by which it usually comes in contact with the quadratojugal." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla @@ -384250,6 +406450,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000505 name: processus pterygoideus of maxilla def: "Posterior end of the pars palatina of the maxilla that is in contact with the anterior ramus of the pterygoid." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004527 ! alveolar process of maxilla is_a: UBERON:0004530 ! bony projection property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384257,6 +406459,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000509 name: processus suprafenestralis +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000645 ! corpus @@ -384266,6 +406470,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000512 name: processus zygomatico-maxillaris def: "Posterodorsal extension of the maxilla by which it establishes contact with the squamosal." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla @@ -384274,10 +406480,12 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000515 name: pseudoangular +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004768 ! bone of lower jaw -relationship: derived_from_ancestral_fusion_of UBERON:0004744 ! articular/anguloarticular -relationship: derived_from_ancestral_fusion_of UBERON:0011079 ! angular bone +relationship: has_fused_element UBERON:0004744 ! articular/anguloarticular +relationship: has_fused_element UBERON:0011079 ! angular bone relationship: part_of UBERON:0003278 ! skeleton of lower jaw property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384293,18 +406501,22 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000518 name: pseudodentary def: "Compound bone of adult Gymnophiona, consisting of dentary, coronoid and mentomeckelian." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004768 ! bone of lower jaw is_a: UBERON:0008907 ! dermal bone -relationship: derived_from_ancestral_fusion_of UBERON:0004742 ! dentary -relationship: derived_from_ancestral_fusion_of UBERON:0011598 ! coronoid bone -relationship: derived_from_ancestral_fusion_of UBERON:0011770 ! mentomeckelian +relationship: has_fused_element UBERON:0004742 ! dentary +relationship: has_fused_element UBERON:0011598 ! coronoid bone +relationship: has_fused_element UBERON:0011770 ! mentomeckelian relationship: part_of UBERON:0003278 ! skeleton of lower jaw property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000519 name: pseudodentary tooth +subset: human_subset +subset: mouse_subset is_a: UBERON:0003268 ! tooth of lower jaw intersection_of: UBERON:0001091 {source="cjm"} ! calcareous tooth intersection_of: attaches_to UBERON:3000518 {source="cjm"} ! pseudodentary @@ -384348,6 +406560,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000538 name: recessus fenestrae ovalis +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:3000428 ! perilymphatic system @@ -384357,6 +406571,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000539 name: recessus marsupiatus of premaxilla def: "Is a recess on the surface of the premaxilla near to the base of the pars facialis." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002244 ! premaxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384365,6 +406581,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000540 name: recessus vaginiformis def: "Is a space on the interior surface of the pars facialis of the maxilla." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002397 ! maxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384373,6 +406591,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000543 name: retroarticular process def: "Bony process that is part of the articular and is the point of insertion of the m. interhuoideus posterior." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004530 ! bony projection is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000515 ! pseudoangular @@ -384382,6 +406602,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000547 name: rostral process def: "Is a process of the nasal bone directed anteriorly towards the rostrum." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001681 ! nasal bone @@ -384393,6 +406615,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000560 name: septum semicircularium anterior def: "The anterior connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003037 ! septum is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001846 ! internal ear @@ -384402,6 +406626,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000561 name: septum semicircularium laterale def: "The lateral connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003037 ! septum is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001846 ! internal ear @@ -384411,6 +406637,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000562 name: septum semircularium posterior def: "The posterior connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003037 ! septum is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001846 ! internal ear @@ -384419,6 +406647,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000563 name: seydels palatal process +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000068 ! cartilago ectochoanalis @@ -384428,6 +406658,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000565 name: skeletal support for eminentia olfactoria def: "Elevation of the dorsal surface of the solum nasi medial to the fenestra endochoanalis that provides support for the eminentia olfactoria." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton @@ -384437,6 +406669,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000569 name: solum nasi def: "Unpaired, horizontal plate that forms the floor of the nasal capsule." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "nasal floor" RELATED [UBERON:3000569] synonym: "planum basale" RELATED [UBERON:3000569] synonym: "solum nasale" RELATED [UBERON:3000569] @@ -384448,6 +406682,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000570 name: spatium sacculare +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:3000428 ! perilymphatic system @@ -384456,6 +406692,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000571 name: specialized connective tissue +subset: human_subset +subset: mouse_subset is_a: UBERON:0002384 ! connective tissue property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384463,6 +406701,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000572 name: sphenethmoid def: "Endochondral bone that forms the anterior portion of the braincase and forms from one ossification center on each side of the orbital cartilage." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "orbitosphenoid" RELATED [UBERON:3000572] synonym: "orbitotemporal" RELATED [UBERON:3000572] synonym: "Os sphenethmoidale" RELATED [UBERON:3000572] @@ -384473,6 +406713,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000580 name: stylus of pars media plectri +subset: human_subset +subset: mouse_subset synonym: "columella" RELATED [UBERON:3000580] synonym: "columella auris" RELATED [UBERON:3000580] synonym: "columellare" RELATED [UBERON:3000580] @@ -384493,6 +406735,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000581 name: sulcus dentalis of maxilla def: "Groove located between the pars dentalis and the bases of the maxillary teeth." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002397 ! maxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384501,6 +406745,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000582 name: sulcus dentalis of premaxilla def: "Groove located between the pars dentalis and the bases of the premaxillary teeth." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002244 ! premaxilla property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384509,6 +406755,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000583 name: sulcus for Meckels cartilage def: "A groove on the palatoquadrate that is occupied by the Meckel's cartilage." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:3000012 ! angulosplenial coronoid process property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384517,6 +406765,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000586 name: superior prenasal cartilage def: "Paired, elongate cartilages that extend anteroventrally to abut the dorsomedial margin of the posterior face of the alary process of the premaxilla. The function of these cartilages is to transmit the movement of the premaxilla to the alary cartilages during the closure of the apertura nasalis externa." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton @@ -384542,6 +406792,8 @@ replaced_by: UBERON:0004747 [Term] id: UBERON:3000590 name: supraorbital flange +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011639 ! frontoparietal bone @@ -384551,6 +406803,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000591 name: suprasphenoid def: "Endochondral ossification of the dorsomedial portion of the braincase." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384558,6 +406812,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000597 name: symphysis maxillaris +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001709 ! upper jaw region property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384566,6 +406822,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000599 name: taenia tecti marginalis def: "Cartilaginous connection between the orbital cartilage and otic capsules." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton @@ -384575,6 +406833,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000601 name: tectum nasi def: "Roof of the nasal capsule, confluent with lamina orbitonasalis posteriorly and united to septum nasi." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "tectum nasale" RELATED [UBERON:3000601] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010363 ! endochondral element @@ -384584,12 +406844,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000605 name: tentacular foramen +subset: human_subset +subset: mouse_subset is_a: UBERON:0011773 ! upper jaw opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000610 name: trochlear foramen +subset: human_subset +subset: mouse_subset synonym: "nerve foramen IV" EXACT [] is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384606,6 +406870,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000628 name: ventral ramus of squamosal def: "Longest of the three squamosal rami; it invests the dorsolateral margin of the palatoquadrate. The distal end of the ventral ramus invests the quadrate and articulates with the quadratojugal." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "processus posterolateralis" RELATED [UBERON:3000628] is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure @@ -384615,6 +406881,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000634 name: vomerine canal +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002396 ! vomer @@ -384624,6 +406892,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000639 name: zygomatic ramus of squamosal def: "Ramus (process) that projects anteriorly from the dorsal body of the squamosal and forms part of the posterior margin of the orbit." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000254 ! lamella alaris @@ -384633,6 +406903,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000640 name: arcus praeoccipitalis def: "Skeletal structure that separates the inferior and superior perilymphatic foramina." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384640,6 +406912,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000642 name: maxillopalatine tooth +subset: human_subset +subset: mouse_subset is_a: UBERON:0003267 ! tooth of upper jaw intersection_of: UBERON:0001091 {source="cjm"} ! calcareous tooth intersection_of: attaches_to UBERON:3000288 {source="cjm"} ! maxillopalatine @@ -384651,6 +406925,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000644 name: processus lingularis of nasal skeleton def: "Rod-shaped process that extends caudally from the inferior edge of the planum terminale." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "lingular process" RELATED [UBERON:3000644] synonym: "processus lingularis" BROAD [] is_a: UBERON:0004121 ! ectoderm-derived structure @@ -384663,6 +406939,8 @@ id: UBERON:3000645 name: corpus alt_id: UBERON:3010459 def: "Basal part of the septomaxilla." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "centrum" RELATED [UBERON:3000645] synonym: "pars horizontalis" RELATED [UBERON:3000645] is_a: UBERON:0002513 ! endochondral bone @@ -384676,6 +406954,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000646 name: margo libera def: "Anterior, rounded portion of the corpus of the septomaxilla." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000645 ! corpus @@ -384685,6 +406965,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000647 name: crista interna def: "Sharp ridge that extends medially from the basal part of the processus infrafenestralis; it separates the diverticulum proncipale from the diverticulum medium." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000492 ! processus infrafenestralis @@ -384694,6 +406976,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000648 name: crista praeopercularis def: "Synchondrotic or synostotic connection between the footplate of the pars media plectri and the ventral margin of the fenestra ovalis." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000408 ! pars media plectri @@ -384703,6 +406987,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000649 name: anterior process of vomer def: "Process that extends anterolaterally toward the maxilla-premaxilla articulation." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004530 ! bony projection is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002396 ! vomer @@ -384712,6 +406998,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000650 name: processus frontalis of maxilla def: "Anterio portion of the maxilla that may contact the nasal and take part in the formation of a groove for the nasolacrimal duct." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "processus frontalis" BROAD [] synonym: "processus praeorbitalis of the pars facialis" RELATED [UBERON:3000650] is_a: UBERON:0010313 ! neural crest-derived structure @@ -384723,6 +407011,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000651 name: lamina anterior of maxilla def: "Most anterior part of the maxilla, which is in contact with the premaxilla." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002397 ! maxilla @@ -384733,6 +407023,8 @@ id: UBERON:3000652 name: fossa maxillaris def: "Depression lacated on the inner surface of the maxilla between the palatine process and the pars palatina." [AAO:LAP] comment: Alternative more fish orientated definition: A fossa that is a depression in the proximal end of the maxilla involved in articulation with the palatine [Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.]. [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "maxillary saddle" EXACT [] is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0002397 ! maxilla @@ -384760,6 +407052,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000655 name: processus dorsalis of lamella alaris def: "Dorsal process of the lamella alaris located at the anterior end of the margo orbitalis; a narrow ligament that runs from the frontoparietal is attached to it." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "processus dorsailis" BROAD [] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -384770,6 +407064,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000656 name: processus posterodorsalis of lamella alaris def: "Posterior process of the lamella alaris." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "processus posterodorsalis" BROAD [] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -384780,6 +407076,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000657 name: dentigerous process def: "Tooth-bearing process of the vomer." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "torus dentigerous" RELATED [UBERON:3000657] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -384790,6 +407088,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000658 name: prechoanal process def: "Process that extends laterally from the anterior process; its bifurcation from the postchoanal process occurs at the level of the dentigerous process." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "processus choanalis anterior" RELATED [UBERON:3000658] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -384800,6 +407100,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000659 name: postchoanal process def: "Process that extends laterally from the anterior process; its bifurcation from the prechoanal process occurs at the level of the dentigerous process." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "processus choanalis posterior" RELATED [UBERON:3000659] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -384810,6 +407112,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000660 name: margo choanalis def: "Margin between the prechoanal and postchoanal process. It bounds the fenestra endochoanalis." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002396 ! vomer @@ -384819,6 +407123,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000661 name: crista vomeri def: "Ridge on the dorsal surface of the vomer that runs from the anterior to the postchoanal processes of the vomer; it takes part in the fixation of the bone to the lateral margin of the solum nasi." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002396 ! vomer @@ -384828,6 +407134,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000662 name: processus posterior of parasphenoid def: "Posterior projection of the median part of the parsphenoid, which may extend over the posterior margins of the subotic alae." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "processus posterior" BROAD [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -384837,6 +407145,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000663 name: parahyoid +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384845,6 +407155,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000664 name: hyoid plate def: "Azygous or paired bone that occurs on the ventral surface of the hyoid plate." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384853,6 +407165,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000667 name: pars reuniens def: "Area of fusion of the ceratohyals." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0005884 ! hyoid arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384862,6 +407176,8 @@ id: UBERON:3000668 name: hyoglossal sinus def: "Is the space along the anterior edge of the hyoid plate between the hyale and through which passes the hyoglossus muscle as it passes dorsally into the tongue." [PHENOSCAPE] comment: A anuran (frog) term +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0010272 ! hyoid apparatus relationship: part_of UBERON:3000664 ! hyoid plate @@ -384870,6 +407186,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000670 name: anterior process of hyoid apparatus +subset: human_subset +subset: mouse_subset is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384878,6 +407196,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000671 name: anterolateral process of hyoid plate def: "Processes that flank the hyales laterally and extend anterolaterally from the anterolateral margin of the hyoid plate. They are formed as a result of new cartilaginous growth lateral to the basibranchial." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "processus alaris" RELATED [UBERON:3000671] synonym: "processus anterolateralis" RELATED [UBERON:3000671] synonym: "processus lateralis anterior" RELATED [UBERON:3000671] @@ -384889,6 +407209,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000672 name: posterolateral process def: "Paired processes that extend posterolaterally from the posterolateral margin of the hyoid plate. These processes are formed as a result of new cartilaginous growth lateral to the basibranchial and hypobranchial plate." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:3000664 ! hyoid plate property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384897,6 +407219,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000673 name: posteromedial process def: "Cartilaginous, paired processes that extend posterolaterally from the posterior margin of the hyoid plate. These processes invest the laryngeal apparatus and are ossified in the adult." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "cornua posteriores" RELATED [UBERON:3000673] synonym: "hyoid" RELATED [UBERON:3000673] is_a: UBERON:0004529 ! anatomical projection @@ -384907,6 +407231,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000676 name: bronchial process def: "Paired processes that extend posteroventrally from the anterolateral margins of the cricoid ring." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "processus trachealis" RELATED [UBERON:3000676] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -384916,6 +407242,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000677 name: lateral process of cricoid cartilage +subset: human_subset +subset: mouse_subset synonym: "lateral process" BROAD [] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -384926,6 +407254,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000678 name: esophageal process def: "Median process located on the posterior end of the cricoid cartilage." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "spina oesophagea" RELATED [UBERON:3000678] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -384936,6 +407266,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000680 name: manubrium of hyale def: "Proximal section of the hyale." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "processus anteriores" RELATED [UBERON:3000680] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000101 ! hyale @@ -384944,6 +407276,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000681 name: hyoid apparatus opening +subset: human_subset +subset: mouse_subset is_a: UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384951,6 +407285,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000683 name: sinus nervi hypoglossi def: "Depression that houses the hypoglossus nerve and is located between the anterolateral process and the proximal part of the hyale." [AAO:Rocek_2003] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000681 ! hyoid apparatus opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384958,6 +407294,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000685 name: foramen nervi hypoglossi def: "Foramen that houses the hypoglossus nerve and is located between the anterolateral process and the proximal part of the hyale." [AAO:Rocek_2003] +subset: human_subset +subset: mouse_subset synonym: "foramen laterale" RELATED [UBERON:3000685] is_a: UBERON:3000681 ! hyoid apparatus opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -384966,6 +407304,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000687 name: processus confluens def: "Strip of cartilage that forms the lateral margin of the foramen nervi hypoglossi." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "processus alaris" RELATED [UBERON:3000687] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000101 ! hyale @@ -384975,6 +407315,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000688 name: prominentia apicalis dorsalis def: "Anterior end of the arytenoid cartilage." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "prominentia apicalis anterior" RELATED [UBERON:3000688] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011769 ! cartilaginous projection @@ -384986,6 +407328,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000689 name: prominentia apicalis ventralis def: "Posterior (cardiac) end of the arytenoid cartilage." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "prominentia apicalis posterior" RELATED [UBERON:3000689] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011769 ! cartilaginous projection @@ -384997,6 +407341,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000692 name: pedicel def: "Paired stalks located dorsolateral to the vertebral centrum that provide support to the lateral margins of the neural arch laminae." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002412 ! vertebra property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385005,6 +407351,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000694 name: atlantal cotyle def: "Anterior, single or paired concave facets for articulation with the condyle(s) of the urostyle." [AAO:Francis_1934] +subset: human_subset +subset: mouse_subset synonym: "cavitas glenoidalis" RELATED [UBERON:3000694] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001092 ! vertebral bone 1 @@ -385014,6 +407362,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000696 name: posterior intervertebral notch def: "Indentation on the anterior margin of the pedicel. When two vertebrae articulate, the anterior notch of one vertebra and the posterior notch of the other create a bilateral intervertebral space." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010276 ! space in vertebral column relationship: part_of UBERON:0002412 ! vertebra property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385022,6 +407372,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000701 name: intervertebral space def: "Space formed by the anterior and posterior intervertebral notches. The intervertebral spaces accommodate the spinal nerves as they emerge from the spinal canal." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "intervertebral space" RELATED [UBERON:3000701] is_a: UBERON:0010276 ! space in vertebral column property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385030,6 +407382,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000704 name: anterior intervertebral notch def: "Indentation on the posterior margin of the pedicel. When two vertebrae articulate, the anterior notch of one vertebra and the posterior notch of the other create a bilateral intervertebral space." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010276 ! space in vertebral column relationship: part_of UBERON:0002412 ! vertebra property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385038,6 +407392,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000707 name: pleurapophysis def: "Paired processes that represent the rib attachments to the vertebra plus the ribs." [AAO:Duellman_and_Trueb_1994] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002412 ! vertebra property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385046,6 +407402,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000711 name: procoelous def: "Holochordal vertebral centra that are concave anteriorly and convex posteriorly; they bear a condyle on the posterior end for the articulation with the posterior adjacent vertebral centrum, forming a ball-and-socket joint that allows extensive motion in most directions." [AAO:Pugener_2002, AAO:Trueb_1973] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385053,6 +407411,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000712 name: opisthocoelous def: "Ectochordal or stegochordal vertebral centra that are convex anteriorly and concave posteriorly; they bear a condyle on the anterior end for the articulation with the posterior adjacent vertebral centrum, forming a ball-and-socket joint that allows extensive motion in most directions." [AAO:Pugener_2002, AAO:Trueb_1973] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385060,6 +407420,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000713 name: epichordal def: "Vertebral centrum that originates from ossification of the dorsal portion of the perichordal tube; the resulting element tends to be depressed in cross section." [AAO:Kluge_and_Farris_1969] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385067,6 +407429,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000714 name: perichordal def: "Vertebral centrum that originates from ossification of the entire perichordal tube; the resulting element is cylindrical in cross section and may have an open (notochord retained) or solid center." [AAO:Kluge_and_Farris_1969] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385074,6 +407438,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000715 name: heterocoelous def: "Vertebral centrum that bears saddle-shaped articular surfaces at both ends, having a convexity in the right-left axis and a concavity in the dorsoventral axis. This morphology allows great lateral and vertical flexion." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385081,6 +407447,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000716 name: acoelous def: "Vertebral centrum with flat ends. Between successive vertebrae there is a fibrocartilaginous intervertebral body with a gel-like core, the nucleus pulposus, which is derived from the embryonic notochord. Acoelous vertebrae seem especially suited to receive and distribute compressive forces within the vertebral column." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "amphiplatyan" BROAD [] is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385090,6 +407458,8 @@ id: UBERON:3000717 name: amphicoelous def: "Ectochordal, biconcave or terminally flat vertebral centrum. This design seems to allow limited motion in most directions. An intervertebral body (which may or may not be independent from the adjacent centra) fills the cavity between successive centra. The intervertebral body usually is formed by soft material that may be derived, at least in part, from the embryonic notochord." [AAO:Pugener_2002, AAO:Trueb_1973] comment: The tuatara spine is made up of hourglass-shaped amphicoelous vertebrae, concave both before and behind. This is the usual condition of fish vertebrae and some amphibians, but is unique to tuatara within the amniotes[Wikipedia]. +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385097,6 +407467,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000718 name: ectochordal def: "Spool-shaped vertebral centrum with an open center in which the notochord lies." [AAO:Griffiths_1959] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385104,6 +407476,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000719 name: holochordal def: "Spool-shaped vertebral centrum with a solid center. All traces of the notochord dissapear." [AAO:Griffiths_1959] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385111,6 +407485,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000720 name: stegochordal def: "Vertebral centrum that is depressed dorsoventrally and solid. All traces of the notochord dissapear." [AAO:Griffiths_1959] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385118,6 +407494,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000727 name: haemal arch lamina def: "Paired plates that form the haemal arch. The lateral margin of each lamina is firmly attached to the ventral surface of the caudal vertebral centrum and the medial end fuses to the medial end of the opposite lamina." [AAO:Pugener_2002] +subset: mouse_subset is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006065 ! hemal arch property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385126,6 +407503,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000728 name: nucal keel def: "Longitudinal process found in all cervical vertebrae, except the atlas, for the attachment of dorsal head musculature." [AAO:Duellman_and_Trueb_1994] +subset: human_subset +subset: mouse_subset is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001092 ! vertebral bone 1 property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385134,6 +407513,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000730 name: foramen nutritium def: "Opening on the lateral side of the vertebra for the passage of blood vessels." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010276 ! space in vertebral column property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385141,6 +407522,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000735 name: mid-dorsal keel def: "Ridge-shaped structure present on the dorsomedial surface of the neural arch lamina; this structure is produced at the point of junction of the contralateral sides of each neural arch." [AAO:Pugener_2002] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003861 ! neural arch property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385159,6 +407542,8 @@ replaced_by: UBERON:0002498 id: UBERON:3000743 name: sacral condyle def: "Anterior, paired convex facets for articulation with the cotyle(s) of the urostyle." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003690 ! fused sacrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385167,6 +407552,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000744 name: urostyle cotyle def: "Anterior, single or paired concave facets for articulation with the sacral condyle(s)." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "fossa condyloidea ossis coccygei" RELATED [UBERON:3000744] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003106 ! urostyle @@ -385176,6 +407563,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000745 name: webbing of bone in vertebral column def: "In anurans, pair of bony plates that connect the posteromedial margins of the sacral diapophyses with the lateral margins of the anterior portion of the urostyle." [AAO:Pugener_and_Maglia_2008] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001130 ! vertebral column property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385184,6 +407573,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000746 name: urostyle ridge def: "Longitudinal crest on the dorsal side of the urostyle formed by the caudal neural arches." [AAO:Maglia_et_al_2007] +subset: human_subset +subset: mouse_subset synonym: "crista ossi coccygei" RELATED [UBERON:3000746] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003106 ! urostyle @@ -385193,6 +407584,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000748 name: suprascapula def: "Paired, cartilaginous elements located in the dorsolateral shoulder region. Each suprascapula is a flat broad blade that extends medially." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "adscapulum" RELATED [UBERON:3000748] synonym: "episcapulum" RELATED [UBERON:3000748] synonym: "omolita" RELATED [UBERON:3000748] @@ -385205,6 +407598,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000752 name: pars acromialis def: "Prominent structure (anteromedial head) that forms the anterior section of the ventral margin of the scapula." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385213,6 +407608,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000753 name: pars glenoidalis of scapula def: "Concave structure (posteromedial head) that forms the posterior head of the ventral margin of the scapula. The pars glenoidalis articulates with the humerus, and comprises the dorsal portion of the glenoid fossa." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "glenoid head of scapula" EXACT [] is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0006849 ! scapula @@ -385221,6 +407618,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000755 name: pectoral girdle opening +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385229,6 +407628,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000756 name: crista dorsalis humeri def: "Small hooked process on the dorsal aspect of the humeral shaft; it does not extend on to the glenoid head. The m subscapularis is inserted on it." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "crista dorsalis" RELATED [UBERON:3000756] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -385239,6 +407640,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000757 name: zonal area def: "All those parts of the pectoral girdle ventral and medial to the glenoid fossa." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385247,6 +407650,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000759 name: omosternum def: "Proximal portion of the prezonal element of the pectoral girdle. It may be a flat, midventral cartilaginous structure or a calcified or bony element elaborated into a stylum." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "episternum" RELATED [UBERON:3000759] synonym: "interclavicle" RELATED [UBERON:3000759] synonym: "prezonal element" RELATED [UBERON:3000759] @@ -385263,6 +407668,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000762 name: epicoracoid def: "Paired, flat cartilaginous arches that compose the central portion of the zonal area, unites the clavicle and coracoid of each half of the pectoral girdle, and form the medial margins of the pectoral fenestrae." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "coracoid cartilage" RELATED [UBERON:3000762] synonym: "corpus sterni" RELATED [UBERON:3000762] synonym: "entosternal" RELATED [UBERON:3000762] @@ -385277,6 +407684,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000763 name: epicoracoid bridge def: "A pair of cartilaginous expansions (one from each epicoracoid cartilage) that project anteriorly. They articulate anteriorly with the omosternum." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "procoracoid bridge" RELATED [UBERON:3000763] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000762 ! epicoracoid @@ -385285,6 +407694,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000767 name: pelvic girdle opening +subset: human_subset +subset: mouse_subset is_a: UBERON:0007832 ! pelvic girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385292,6 +407703,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000771 name: acetabular depression def: "The central, most concave portion of the acetabulum, which remains open." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000767 ! pelvic girdle opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385299,6 +407712,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000773 name: ilial ridge def: "Longitudinal crest on the dorsal side of the shaft of the ilium." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "ala ossis ilei" RELATED [UBERON:3000773] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection @@ -385309,6 +407724,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000774 name: ilial shaft def: "Anterior rod that articulates with the sacrum." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001273 ! ilium @@ -385326,6 +407743,8 @@ replaced_by: UBERON:0010747 id: UBERON:3000776 name: glenoid foramen def: "Opening on the glenoid fossa." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000755 ! pectoral girdle opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385333,6 +407752,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000777 name: epicoracoid horn def: "A pair of cartilaginous expansions (one from each epicoracoid cartilage) that project posteriorly. They articulate with the sternum by means of grooves, pouches or fossae in the dorsal surface of the sternum and provide a site for the insertion of a pair of muscles derived from the m. rectus abdominis." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000762 ! epicoracoid property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385341,6 +407762,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000778 name: supracoracoid foramen def: "Opening on the scapulocoracoid bone through which passes the n. supracoracoideus and the corresponding artery and vein." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "foramen supracoracoideum" RELATED [UBERON:3000778] is_a: UBERON:3000755 ! pectoral girdle opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385349,6 +407772,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000779 name: pectoral fenestra def: "Ovoid space on the pectoral girdle limited anteriorly by the procoracoid, medially by the epicoracoid, and posteriorly by the coracoid." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "fenestra between procoracoid and coracoid" RELATED [UBERON:3000779] is_a: UBERON:3000755 ! pectoral girdle opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385357,6 +407782,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000780 name: incisura coracoidea def: "Notch that separates the cartilaginous regions of the procoracoid and coracoid." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385366,6 +407793,8 @@ id: UBERON:3000783 name: fovea capitis of humerus def: "Ovoid roughened pit, which is situated a little below and behind the center of the head, and serves as a site of attachment for ligaments." [AAO:LAP] comment: Not to be confused with the fovea capitis of the femur +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0006801 ! proximal head of humerus @@ -385375,6 +407804,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000784 name: ulnar condyle def: "Semi-elliptical ball located at the lower end of the humerus, adjacent to the humeral ball." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "medial condyle" RELATED [UBERON:3000784] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure @@ -385385,6 +407816,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000785 name: trochlear groove of humerus def: "Furrow between the humeral head and the ulnar condyle." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "trochlear sulcus of humerus" EXACT [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure @@ -385395,6 +407828,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000786 name: fossa cubitalis ventralis def: "Depresion on the distal end of the humerus, just anterior to the humeral head, in which the end of the radius fits when the forelimb is flexed." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0000976 ! humerus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385403,6 +407838,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000787 name: collum antibrachii def: "In a fused radio-ulna, the proximal portion of the compound bone (where the sulcus longitudinalis is barely evident or absent) is a cylindrical pillar." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006715 ! radio-ulna @@ -385422,6 +407859,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000793 name: anomocoelous def: "Stegochordal slightly biconcave or flat terminally vertebral centrum. Each intervertebral cartilage is subdivided anteriorly and posteriorly, producing a free intervertebral element between adjacent vertebrae. This element subsequently ossifies and remains free." [AAO:Trueb_1973] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385429,6 +407868,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000794 name: displasiocoelous def: "Vertebral column in which the first seven vertebrae have holochordal centra and the intervertebral cartilages are posteriorly subdivided in the procoelous manner. The eighth presacral vertebra has a holochordal centrum and the intervertebral cartilage is subdivided in the opisthocoelous manner. Thus, the first seven presacral vertebrae are concave anteriorly and convex posteriorly, whereas the eighth is biconcave." [AAO:Trueb_1973] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385436,6 +407877,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000796 name: imbricate neural arch def: "Overlapping neural arches that obscure the spinal cord dorsally." [AAO:Trueb_1973] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003861 ! neural arch property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385443,6 +407886,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000797 name: non-imbricate neural arch def: "Neural arches that do not overlap, thus exposing the spinal cord dorsally." [AAO:Trueb_1973] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003861 ! neural arch property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385450,6 +407895,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000798 name: presacral shield def: "Dorsal, dermal plate of bone that overlies the presacral vertebrae. Such shield usually has irregular, sculptured surfaces, frequently is broadly expanded, and may be composed of several separate plates." [AAO:Trueb_1973] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009568 ! trunk region of vertebral column property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385458,6 +407905,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000799 name: cartilago paraglenoidalis def: "Strip of cartilage that separates the coracoid from the scapula." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385466,6 +407915,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000800 name: intercotylar space def: "Space between the atlantal cotyles." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "spatium interglenoidale" RELATED [UBERON:3000800] is_a: UBERON:0010276 ! space in vertebral column relationship: part_of UBERON:0001092 ! vertebral bone 1 @@ -385475,6 +407926,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000801 name: caput glenoidale def: "Convex articular facet of the vertebral centrum for the articulation with the adjacent centrum." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385483,6 +407936,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000802 name: fossa glenoidalis def: "Concave articular facet of the vertebral centrum for the articulation with the adjacent centrum." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001075 ! bony vertebral centrum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385491,6 +407946,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000803 name: sulcus articularis lateralis def: "In a zygapophysis that has ridges and sulci, the lateral canal between the carina distalis and the carina medialis." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385499,6 +407956,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000804 name: sulcus articularis medialis def: "In a zygapophysis that has ridges and sulci, the medial canal between the carina medialis and the carina proximalis." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385507,6 +407966,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000805 name: carina proximalis def: "In a zygapophysis that has ridges and sulci, the proximal ridge." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385515,6 +407976,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000806 name: carina medialis def: "In a zygapophysis that has ridges and sulci, the medial ridge." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385523,6 +407986,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000807 name: carina distalis def: "In a zygapophysis that has ridges and sulci, the distal ridge." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385531,6 +407996,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000808 name: parasagittal processes def: "Paired, posteriorly directed process at the posterior margin of each neural arch lamina." [AAO:Cannatella_1985] +subset: human_subset +subset: mouse_subset is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0003861 ! neural arch property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385539,6 +408006,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000809 name: accessory articulation def: "Paired, additional vertebral articulations located medial to the intervertebral space, adjacent to the vertebral centrum." [AAO:Cannatella_1985] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004905 ! articulation relationship: part_of UBERON:0002412 ! vertebra property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385547,6 +408016,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000810 name: fissura sagittalis def: "Medial groove in the longitudinal ridge of the urostyle formed by the incomplete dorsal fusion of the caudal neural arches." [AAO:Maglia_et_al_2007] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000746 ! urostyle ridge property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385555,6 +408026,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000811 name: glenoid end of clavicle def: "Lateral end of the clavicle, which usually lies in close proximity to the pars acromialis of the scapula, and occassionally may fuse to it." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "extremitas glenoidalis" RELATED [UBERON:3000811] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001105 ! clavicle bone @@ -385564,6 +408037,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000813 name: sulcus pro cartilagine praecoracoidealis def: "Canal on the posterior aspect of the clavicle that accomodates the anterior margin of the procoracoid cartilage." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001105 ! clavicle bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385606,6 +408081,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000818 name: margo anterior of scapula def: "Anterior margin of the scapula." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385614,6 +408091,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000819 name: margo clavicularis def: "Inferior margin of the pars acromialis of the scapula, which articulates with the clavicule." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385622,6 +408101,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000820 name: margo posterior of scapula def: "Posterior margin of the scapula." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385630,6 +408111,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000821 name: margo suprascapularis def: "Superior margin of the scapula, which articulates with the suprascapula." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385638,6 +408121,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000822 name: pars suprascapularis def: "Superior portion of the scapula, which is thinner than the rest of the shaft." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385646,6 +408131,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000823 name: sinus interglenoidalis def: "Notch or indentation between the pars glenoidalis and pars acromialis of the scapula." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385654,6 +408141,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000824 name: tenuitas cristaeformis def: "Leading (anterior) portion of the scapula, which is thinner than the rest of the shaft." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385662,6 +408151,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000825 name: crista longitudinalis scapula def: "Longitudinal ridge on the medial (inner) face of the scapula." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006849 ! scapula property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385741,6 +408232,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000836 name: crista lateralis humeri def: "Ridge on the lateral aspect of the humeral shaft located just anterior to the radial (lateral) epicondyle." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -385750,6 +408243,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000837 name: crista medialis humeri def: "Ridge on the medial aspect of the humeral shaft that extends from the level of the middle portion of the shaft to ulnar (medial) epicondyle." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -385759,6 +408254,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000839 name: crista radii def: "Small ridge on the lateral aspect of the radial shaft, located at the level of the collum antibrachii." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001423 ! radius bone @@ -385768,6 +408265,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000840 name: capitulum of radius def: "Lateral portion of the proximal (upper) articular surface of the radius that consists of an eminence with a rounded apex." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0001423 ! radius bone @@ -385785,6 +408284,8 @@ replaced_by: UBERON:3000840 id: UBERON:3000842 name: capitulum ulnae def: "Small eminence on the distal articular head of the ulna." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0001424 ! ulna @@ -385794,6 +408295,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000844 name: sulcus longitudinalis def: "In a fused radio-ulna, longitudinal furrow that demarcates the area of fusion of both elements. This sulcus is deep in the distal portion of the compound bone, but barely evident or absent at the proximal end." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006715 ! radio-ulna @@ -385803,6 +408306,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000846 name: element Y of fore mesopodium def: "Oval carpal element that is located on the anteromedial side of the radiale and the anterolateral side of the ulnare. Anteriorly, it articulates with carpals 1 through 4 (or 2 through 5 according to some authors). It is also recognized as centrale by some authors. This element originates from one, two, or three condensation centers. Occasionally it may fuse to carpal 2(1), carpal 3(2), the ulnare, or other elements." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009880 ! carpal skeleton @@ -385812,6 +408317,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000856 name: intercalary element of fore digit def: "Small elements present in all digits of the manus, when present in a taxon. Each intercalary element articulates with the anteroventral end of the penultimate phalanx proximally and the distal phalanx distally." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004249 ! manual digit bone relationship: part_of UBERON:0002389 ! manual digit property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385820,6 +408327,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000859 name: foramen perforans carpi def: "Opening for the passage of the perforans carpi artery from the ventral to the dorsal side. It perforates the compound ulnare + intermedium." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:3000856 ! intercalary element of fore digit @@ -385829,11 +408338,13 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000862 name: pubo-ischium def: "Composite element formed by the fusion of the ischium and pubis." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0010363 ! endochondral element -relationship: derived_from_ancestral_fusion_of UBERON:0001274 ! ischium -relationship: derived_from_ancestral_fusion_of UBERON:0001275 ! pubis +relationship: has_fused_element UBERON:0001274 ! ischium +relationship: has_fused_element UBERON:0001275 ! pubis relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385841,6 +408352,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000865 name: epileon def: "Dorsal extremity of the ilial shaft, which remains cartilaginous." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:3000774 ! ilial shaft @@ -385850,6 +408363,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000866 name: agger limitans anterior of ilium def: "Shelf-like expansion of the ilial corpus that forms the anterior border of the acetabulum." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006802 ! acetabular rim @@ -385859,6 +408374,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000867 name: agger limitans anterior of ischium def: "Shelf-like expansion of the ischium that forms the posterior border of the acetabulum." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001274 ! ischium @@ -385878,6 +408395,8 @@ replaced_by: UBERON:4200125 id: UBERON:3000869 name: ilial protuberance def: "Small, dorsolaterally projecting knob located just anterior to the supra-acetabular expansion and about the level of the anterior border of the acetabulum." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "dorsal protuberance" RELATED [UBERON:3000869] synonym: "tuber superior" RELATED [UBERON:3000869] is_a: UBERON:0004120 ! mesoderm-derived structure @@ -385889,6 +408408,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000870 name: preacetabular expansion def: "Ventral portion of the ilial corpus, located anteroventral to the acetabulum." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "pars descendens ilei" RELATED [UBERON:3000870] synonym: "ventral acetabular expansion" RELATED [UBERON:3000870] is_a: UBERON:0004120 ! mesoderm-derived structure @@ -385900,6 +408421,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000871 name: fossula tuberis superioris def: "Small depression dorsal to the proximal portion of the collum ilei and ventral to the ilial protuberance." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0010747 ! body of ilium @@ -385909,6 +408432,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000872 name: collum ilei def: "Cyllindrical pillar that originates anterior to the acetabulum and extends to the ilial shaft." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0010747 ! body of ilium @@ -385918,6 +408443,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000873 name: pars cylindriformis ilei def: "Elongate, cylindrical structure on the ventral side of the shaft of the ilium that extends through its entire length." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:3000774 ! ilial shaft @@ -385927,6 +408454,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000874 name: crista ischii def: "Crest on the posterior side of the ischium, which may also extend to the posteroventral aspect of pubis." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001274 ! ischium @@ -385936,6 +408465,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000875 name: spina pelvis posterior def: "Small, rounded process on the anterodorsal margin of the ischium, just posterior to the area of articulation with the ilium." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001274 ! ischium @@ -385945,6 +408476,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000876 name: spina pelvis anterior def: "Small, rounded process on the anteroventral margin of the preacetabular expansion of the ilial corpus." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0010747 ! body of ilium @@ -385954,6 +408487,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000877 name: intumescentia bilateralis inferior def: "Small protuberance on the ischium, located close to its posteroventral margin." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001274 ! ischium @@ -385963,6 +408498,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000878 name: intumescentia bilateralis superior def: "Small protuberance on the ischium, located at the level of the superior margin of the acetabulum and close to its posterior margin." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001274 ! ischium @@ -385972,6 +408509,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000879 name: incisura terminalis def: "Small indentation on the posterior margin of the ischium, ventral to the intumescentia bilateralis superior." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001274 ! ischium @@ -385981,6 +408520,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000880 name: crista hypertrophica ischium def: "Large protuberance on the dorsal aspect of the ischium that extends from the ischio-ilium articulation to the spina pelvis posterior." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001274 ! ischium @@ -385990,6 +408531,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000882 name: interilial region def: "Area of convergence of the ilial shafts. When the preacetabular ilium is narrow, the interilial configuration is V-shaped or narrowly rounded, whereas when the interilial region is broadly expanded the interilial configuration is U-shaped." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001273 ! ilium @@ -385999,6 +408542,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000883 name: recessus coccygealis def: "Area dorsal to the pelvic girdle symphysis, between the dorsal portions of the ilial corpora, where lies the posterior terminus of the urostyle." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:3000774 ! ilial shaft @@ -386008,6 +408553,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000884 name: epipubis def: "Small prepubic element formed by a plate of cartilage (which may calcify in the adult) that is synchondrotically united with the pubis." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -386025,6 +408572,8 @@ replaced_by: UBERON:3010240 id: UBERON:3000886 name: ypsiloid cartilage def: "Y-shaped cartilage lying in the middle line, anterior to the pubo-ischium with which it articulates. It lies dorsal to the rectus abdominis muscle with which it articulates." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "abdominal sternum" RELATED [UBERON:3000886] synonym: "cartilago epipubes" RELATED [UBERON:3000886] synonym: "cartilago marsupial" RELATED [UBERON:3000886] @@ -386040,6 +408589,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000894 name: femoral ridge def: "Low crest that arises just behind the acetabular head and extends distally for about one-third the length of the femoral shaft." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "crista femoris" RELATED [UBERON:3000894] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -386057,6 +408608,8 @@ is_obsolete: true id: UBERON:3000896 name: foveal depression def: "Ovoid roughened pit situated on the dorsal and anteroventral surface of the acetabular head wherein the ligaments attaching the bone to the acetabulum are inserted." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0006767 ! head of femur property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386065,6 +408618,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000898 name: trochanteric crest def: "Paired ridges on the ventral surface of the femoral shaft that run toward the femoral trochanter; the posterior crest is less developed." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000981 ! femur @@ -386074,6 +408629,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000903 name: tibial crest def: "Ridge that arises from the dorso-masial side of the extensor surface of the tibia. It receives the insertion of the tendon of the extensor ilio-tibialis muscle." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000979 ! tibia @@ -386083,6 +408640,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000904 name: apophysis distalis of tibiofibula def: "Swelling on the extensor surface of the distal head of the tibiofibula." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006714 ! tibiofibula @@ -386092,6 +408651,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000905 name: caput ossis cruris def: "Proximal head of the tibiofibula that articulates with the distal head of the femur." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006714 ! tibiofibula @@ -386101,6 +408662,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000906 name: sulcus pro musculo extensori cruris brevis def: "Small canal on the proximal head of to the tibiofibula, lateral to the apophysis distalis, for the insertion of the cruris brevis muscle." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006714 ! tibiofibula @@ -386110,6 +408673,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000907 name: eminentia arcuata def: "Small crest on the extensor surface of the proximal head of the tibiofibula (tibial side)." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006714 ! tibiofibula @@ -386119,6 +408684,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000908 name: sulcus distalis ossis cruris def: "In a fused tibiofibula, longitudinal furrow in the distal portion of the compound bone that demarcates the area of fusion of both elements." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006714 ! tibiofibula @@ -386128,6 +408695,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000909 name: sulcus proximalis ossis cruris def: "In a fused tibiofibula, longitudinal furrow in the proximal portion of the compound bone that demarcates the area of fusion of both elements." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006714 ! tibiofibula @@ -386143,6 +408712,8 @@ is_obsolete: true id: UBERON:3000911 name: foramen nutritium exterius def: "Foramen for the tibial artery and vein and the deep peroneal nerve; it pierces through the midpoint of the shaft of the tibiofibula." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0006714 ! tibiofibula @@ -386152,6 +408723,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000915 name: spatium intertarsale def: "Separation of the tibiale and fibulare along their longitudinal axia." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0004454 ! tarsal region property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386160,6 +408733,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000916 name: apophysis proximalis def: "Swelling on the extensor surface of the proximal compound head of the tibiale and fibulare." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009879 ! tarsal skeleton @@ -386169,6 +408744,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000917 name: apophysis distalis of tibiale fibulare def: "Swelling on the extensor surface of the distal compound head of the tibiale and fibulare." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009879 ! tarsal skeleton @@ -386178,6 +408755,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000921 name: element Y of hind mesopodium def: "Oval tarsal element that is located on the anteromedial side of the tibiale. Anteriorly, it articulates with the proximal prehallux, tarsals 1, 2, and 3." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386186,6 +408765,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000922 name: prehallux skeleton def: "One to three or four elements located ventral and medial to the metatarsal of digit I. When more than one elements are present, they are smaller than the proximal prehallux." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "prehallux" BROAD [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision @@ -386198,6 +408779,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000931 name: intercalary element of hind digit def: "Small elements present in all digits of the pes, when present in a taxon. Each intercalary element articulates with the anteroventral end of the penultimate phalanx proximally and the distal phalanx distally." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004248 ! pedal digit bone relationship: part_of UBERON:0001466 ! pedal digit property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386206,6 +408789,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000934 name: foramen perforans tarsi def: "Small opening between the centrale and fibulare that allows the perforans tarsi artery to pass from the ventral to the dorsal side of the ankle." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009879 ! tarsal skeleton @@ -386227,6 +408812,8 @@ replaced_by: UBERON:0006849 id: UBERON:3000936 name: zonal element def: "All those parts of the pectoral girdle in the central region of the zonal area." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004765 ! skeletal element intersection_of: UBERON:0004765 ! skeletal element intersection_of: part_of UBERON:3000757 ! zonal area @@ -386237,6 +408824,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000937 name: prezonal element def: "All those parts of the pectoral girdle that lie anterior to the zonal area." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:3000757 ! zonal area property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386245,6 +408834,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000938 name: postzonal element def: "All those parts of the pectoral girdle that lies posterior to the zonal area." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:3000757 ! zonal area property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386253,6 +408844,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000941 name: arciferal girdle def: "Pectoral girdle in which the epicoracoid cartilages are elaborated into posteriorly directed epicoracoid horns. Most arciferal pectoral girdles are characterized by fusion of the epicoracoid cartilages in the interclavicle region. Posterior to the clavicles, the epicoracoids usually are free and overlapping." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0007831 ! pectoral girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386260,6 +408853,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000942 name: firmisternal girdle def: "Pectoral girdle that lacks epicoracoid horns. The sternum is fused to the pectoral arch, and the epicoracoid cartilages of each half of the girdle are fused to one another. The midzonal length of the girdle is shorter than that of an arciferal girdle, but pre- and postzonal elements tend to be longer." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0007831 ! pectoral girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386267,6 +408862,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000943 name: pseudofirmisternal girdle def: "Modified arciferal pectoral girdle in which the fusion of the epicoracoid cartilages in the interclavicle region is extended posteriorly. Thus, the cartilages no longer overlap freely, and functionally a partially firmisternal condition is created." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0007831 ! pectoral girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386274,6 +408871,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000944 name: pseudoarciferal girdle def: "Modified firmisternal pectoral girdle in which the epicoracoid cartilages are partly free and overlapping; however, the epicoracoids are fused to one another and the sternum postermodially." [AAO:LAP] +subset: human_subset +subset: mouse_subset is_a: UBERON:0007831 ! pectoral girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386281,6 +408880,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000945 name: inscriptional rib def: "Three pairs of cartilaginous elements posterior to the sternum that lie in the myosepta of the ventral trunk musculature." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "abdominal ribs" RELATED [UBERON:3000945] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000938 ! postzonal element @@ -386290,6 +408891,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000948 name: articular process def: "Paired processes located on the anterior end of the cricoid cartilage." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "processus articularis anterior" RELATED [UBERON:3000948] is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004530 ! bony projection @@ -386309,6 +408912,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000950 name: os triangulare def: "Small, broadly triangular bar of bone lying across the ventral side of the pharynx at the junction of the M. genio-hyoideus and the M. rectus cervicis superficialis." [AAO:Francis_1934] +subset: human_subset +subset: mouse_subset synonym: "basi-branchial II" RELATED [UBERON:3000950] synonym: "os thyroideum" RELATED [UBERON:3000950] synonym: "os triquetum" RELATED [UBERON:3000950] @@ -386322,6 +408927,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000951 name: anterior radial def: "Paired, horn-like processes of basibranchial I that protrude in an antero-dorso-lateral direction, being more or less embedded in the tongue musculature. These elements contitute the hypohyals." [AAO:Francis_1934] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386330,6 +408937,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000952 name: posterior radial def: "Paired, horn-like processes of basibranchial I that protrude in an antero-dorso-lateral direction, being more or less embedded in the tongue musculature. They arise secondarily during metamorphosis, and are therefore not strictly part of the visceral skeleton." [AAO:Francis_1934] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386338,6 +408947,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000953 name: ceratobranchials II--IV def: "Paired bars that articulate with hypobranchial II. Reduction of loss of these elements is common in salamanders." [AAO:LAP] +subset: human_subset +subset: mouse_subset synonym: "epibranchials" RELATED [UBERON:3000953] is_a: UBERON:2002103 ! ceratobranchial series relationship: part_of UBERON:0010272 ! hyoid apparatus @@ -386347,6 +408958,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000954 name: hypobranchial I def: "Paired bar that articulates with basibranchial I. It forms the anterior portion of the posterior cornu of the hyoid." [AAO:Francis_1934] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386355,6 +408968,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000955 name: ceratobranchial I def: "Paired bar that articulates with, or is fused to, hypobranchial I. It forms the posterior portion of the posterior cornu of the hyoid." [AAO:Francis_1934] +subset: human_subset +subset: mouse_subset synonym: "epibranchial" RELATED [UBERON:3000955] is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0010272 ! hyoid apparatus @@ -386364,6 +408979,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000956 name: hypobranchial II def: "Paired bar that articulates anteriorly with basibranchial I and posteriorly with ceratobranchials II--IV." [AAO:Duellman_and_Trueb_1994] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0010272 ! hyoid apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386381,6 +408998,8 @@ id: UBERON:3000961 name: external integument structure def: "Structures of the dermis, epidermis, glands and pigment cells recognizable on the external surfaces of the integument." [AAO:EJS] comment: Not clear how this differs from parent class. See https://github.com/obophenotype/uberon/issues/1305 +subset: human_subset +subset: mouse_subset is_a: UBERON:0003102 ! surface structure intersection_of: UBERON:0003102 ! surface structure intersection_of: part_of UBERON:0002199 ! integument @@ -386391,6 +409010,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000965 name: basale commune (carpal) def: "Amalgamation of distal carpals 1 and 2." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001481 ! distal carpal bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386398,6 +409019,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000966 name: angulosplenial def: "Dermal bone of anuran lower jaw investing lingual and ventral surfaces of Meckel's cartilage; forming coronoid process and articulating with palatoquadrate posteriorly." [AAO:EJS] +subset: human_subset +subset: mouse_subset synonym: "angular" RELATED [UBERON:3000966] synonym: "goniale" RELATED [UBERON:3000966] is_a: UBERON:0004768 ! bone of lower jaw @@ -386416,6 +409039,8 @@ is_obsolete: true id: UBERON:3000972 name: head external integument structure def: "Dermal, epidermal, glandular and pigment structures of the external head integument." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000961 ! external integument structure intersection_of: UBERON:3000961 ! external integument structure intersection_of: part_of UBERON:0000033 ! head @@ -386426,6 +409051,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000977 name: body external integument structure def: "Dermal, epidermal, glandular and pigment structures of the body integument." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000961 ! external integument structure intersection_of: UBERON:3000961 ! external integument structure intersection_of: part_of UBERON:0002100 ! trunk @@ -386436,6 +409063,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000981 name: limb external integument structure def: "Dermal, epidermal, glandular and pigment structures of the limb integument." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000961 ! external integument structure intersection_of: UBERON:3000961 ! external integument structure intersection_of: part_of UBERON:0002101 ! limb @@ -386446,6 +409075,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000982 name: tail external integument structure def: "Dermal, epidermal, glandular and pigment structures of the tail integument." [AAO:EJS] +subset: mouse_subset is_a: UBERON:3000961 ! external integument structure intersection_of: UBERON:3000961 ! external integument structure intersection_of: part_of UBERON:0007812 ! post-anal tail @@ -386455,12 +409085,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000989 name: pectoral fold +subset: human_subset +subset: mouse_subset is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000991 name: dorsal folds +subset: human_subset +subset: mouse_subset is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386474,6 +409108,8 @@ replaced_by: UBERON:3000089 [Term] id: UBERON:3000993 name: otic and occipital +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3010013 ! larval chondrocranium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386481,12 +409117,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000994 name: longitudinal dorsal folds +subset: human_subset +subset: mouse_subset is_a: UBERON:3000991 ! dorsal folds property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3000995 name: transversal dorsal folds +subset: human_subset +subset: mouse_subset is_a: UBERON:3000991 ! dorsal folds property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386494,6 +409134,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3000998 name: suprarostral cartilage def: "Larval upper jaws articulate with trabecular horns." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003933 ! cranial cartilage is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element @@ -386503,6 +409145,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3000999 name: dorsal pouch +subset: human_subset +subset: mouse_subset is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386523,12 +409167,16 @@ replaced_by: UBERON:0008904 id: UBERON:3001002 name: basale commune (tarsal) def: "Amalgamation of distal tarsals 1 and 2." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010721 ! distal tarsal bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3001003 name: cloacal fold +subset: human_subset +subset: mouse_subset is_a: UBERON:3000977 ! body external integument structure relationship: part_of UBERON:0000162 ! cloaca property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386536,30 +409184,40 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3001005 name: dorsolateral fold +subset: human_subset +subset: mouse_subset is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3001007 name: body granules +subset: human_subset +subset: mouse_subset is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3001008 name: body wart +subset: human_subset +subset: mouse_subset is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3001009 name: body spicule +subset: human_subset +subset: mouse_subset is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3001010 name: body tubercle +subset: human_subset +subset: mouse_subset is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386572,6 +409230,8 @@ is_obsolete: true [Term] id: UBERON:3010006 name: dorsal skin texture +subset: human_subset +subset: mouse_subset is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386589,12 +409249,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010010 name: ventral skin texture +subset: human_subset +subset: mouse_subset is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010011 name: axillary glands +subset: human_subset +subset: mouse_subset is_a: UBERON:3010603 ! body gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386602,12 +409266,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010013 name: larval chondrocranium def: "Cartilaginous larval skull." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010323 ! cranial skeletal system property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010014 name: inguinal glands +subset: human_subset +subset: mouse_subset is_a: UBERON:3010603 ! body gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386615,12 +409283,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010018 name: M. glutaeus magnus def: "Originates from the superior process of the ilium and inserts on the aponeuronis of the M. cruralis." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010021 name: dorsal glands +subset: human_subset +subset: mouse_subset is_a: UBERON:3010603 ! body gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386628,6 +409300,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010022 name: M. tensor fasciae latae def: "Originates on the ventro-lateral aspect of the ala ossis ilei and the ventral surface of the iliacus externus. Inserts on the lateral surface of the cruralis, the dorso-lateral surface of the gluteus magnus, and on the aponeurosis of the cruralis." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386635,6 +409309,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010027 name: M. sartorius def: "Originates on the ventral pelvic rim, the pubic region, and the ventral surface of the adductor longus. The insertion bifurcates distally; the ventral portion attaches to the aponeurosis of the cruralis and the dorsal part attaches to the distal attachment of the gracilis major, the semitendinosus, and to the aponeurosis of the cruralis." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386649,6 +409325,8 @@ is_obsolete: true [Term] id: UBERON:3010031 name: ventral glands +subset: human_subset +subset: mouse_subset is_a: UBERON:3010603 ! body gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386656,6 +409334,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010032 name: M. semitendinosus def: "Originates by two tendons: one on the postero-ventral aspect of the pelvic rim, the other, a dorsal tendon from the postero-dorsal pelvic rim under the ventral edge of M. semimembranosus. Inserts on the ventral surface of the tibiofibula." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386663,6 +409343,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010039 name: protandrous hermaphroditic organism def: "Sequential hermaphroditic organism that produces gametes first of the male sex, and then later of the female sex." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010895 ! sequential hermaphroditic organism property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386670,12 +409352,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010042 name: protogynous hermaphroditic organism def: "Sequential hermaphroditic organism that produces gametes first of the female sex, and then later of the male sex." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010895 ! sequential hermaphroditic organism property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010044 name: dorsal crest +subset: human_subset +subset: mouse_subset is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386683,6 +409369,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010045 name: centrale 1 def: "Distal-most centrale when two are present." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0012131 ! centrale relationship: part_of UBERON:0009879 ! tarsal skeleton @@ -386692,6 +409380,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010047 name: M. quadratus femoris def: "Originates on the ventro-lateral border of the ischium and inserts on the ventro-medial surface of the femur at the base of caput femoris." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386699,6 +409389,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010049 name: M. gemellus def: "Originates from the dorso-lateral margin of the ischium and inserts on the medial surface of the femur." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386716,6 +409408,8 @@ relationship: in_taxon NCBITaxon:43453 ! Caecilia id: UBERON:3010060 name: centrale (fore) def: "Rectangular cartilage or bone between the distal basal commune and the proximal intermedium." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001435 ! carpal bone is_a: UBERON:0012131 ! centrale relationship: part_of UBERON:0009880 ! carpal skeleton @@ -386735,6 +409429,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010065 name: M. gracilis major def: "Originates by a broad tendon from the postero-ventral surface of the pelvic rim and inserts by two tendons. One broad tendon inserts on the knee aponeurosis, and in part on the ventro-medial surface of the tibiofibula. The other long tendon inserts on the posterior surface of the tibiofibula just below the proximal head." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386742,6 +409438,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010067 name: M. gracilis minor def: "Originates from the pelvic rim just ventral to the anus and merges with M. gracilis major. M. gracilis minor also attaches to the skin." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386749,6 +409447,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010068 name: M. semimembranosus def: "Originates on the ventro-lateral surface of the ischium below the anus and inserts on the ventro-medial aspect of the femur and the head of the tibiofibula by a stout tendon, which is formed by the ventral origin of the plantaris longus." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386756,6 +409456,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010069 name: intermedium (fore) def: "Quadrangular cartilage or bone lying between the preaxial radiale and the postaxial ulnare in the proximal level of the mesopodium." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009880 ! carpal skeleton @@ -386765,12 +409467,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010070 name: M. ileo-fibularis def: "Originates from the ventral border of the ala ossis ilei just posterior to the origin of M. glutaeus maximus. Insterts in the aponeurosis covering the knee joint." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010071 name: cranial crest +subset: human_subset +subset: mouse_subset is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386778,6 +409484,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010072 name: M. pyriformis def: "Originates on the dorso-lateral border of the distal urostyle and inserts on the dorsal surface of the crista femoris. This muscle inserts between the M. ilio-fibularis/M. glutaeus magnus and M. semimembranosus." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386785,6 +409493,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010073 name: centrale 2 def: "The proximal-most rectangular cartilage or bone when two centralelia are present." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0012131 ! centrale relationship: part_of UBERON:0009879 ! tarsal skeleton @@ -386794,12 +409504,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010074 name: M. ileo-femoralis def: "Originates from the postero-ventral surface of the ala ossis ilei and from the insertion tendon of M. ileo-fibularis. Inserts along the dorso-medial border of the femur." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010075 name: tympanic fold +subset: human_subset +subset: mouse_subset is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386807,6 +409521,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010076 name: M. iliacus internus def: "Muscle originates on the ventral border of the ala ossis ilei to insert on the dorso-medial surface of the femur." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386814,12 +409530,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010078 name: M. iliacus externus def: "Originates on the ventral and lateral surfaces of the ala ossis ilei and inserts on the postero-dorsal face of the caput femoris." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010079 name: upper eyelid protuberances +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:3000972 ! head external integument structure relationship: part_of UBERON:0001712 ! upper eyelid @@ -386828,12 +409548,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010080 name: snout protuberances +subset: human_subset +subset: mouse_subset is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010081 name: interorbital fold +subset: human_subset +subset: mouse_subset is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386841,6 +409565,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010082 name: M. pulmonum proprius def: "Originates along the connective tissue covering the dorsal surface of the lung and inserts on the dorsal surface of the femur. Muscle found only in Pipa." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386848,12 +409574,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010084 name: M. tibialis posticus def: "Originates on the entire medial surface of the shaft of the tibiofibula. Inserts on the tibiale by a long tendon proximo-lateral to the insertion of the medial belly of M. tibialis anticus longus." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010085 name: postrictal protuberances +subset: human_subset +subset: mouse_subset is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386861,6 +409591,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010087 name: M. tibialis anticus longus def: "Originates on the ventro-lateral surface of the medial condyle of the femur. Its tendon extends in a groove over the knee in the lateral surface of the tibiofibular head, and penetrates the M. peroneus tendon. Insertion is by a lateral and medial head on the dorso-lateral surface of the fibulare and the medial border of the proximal end of the tibiale respectively." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386868,6 +409600,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010089 name: M. extensor cruris brevis def: "Originates by a slender tendon from the ventral surface of the medial condyle of the femur and passes over the knee to insert as a fleshy belly on the ventro-lateral surface of the tibiofibula." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386875,12 +409609,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010090 name: M. tibialis anticus brevis def: "Originates from the dorso-lateral surface of the tibiofibula and inserts on the proximo-medial surface of the tibiale dorsal to the medial head of M. tibialis anticus longus." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010091 name: upper lip protuberances +subset: human_subset +subset: mouse_subset is_a: UBERON:3000972 ! head external integument structure relationship: part_of UBERON:0001834 ! upper lip property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386897,6 +409635,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010093 name: villosities def: "Small hair or nipple like projection on the integument." [DOI:10.1525/9780520331563] +subset: human_subset +subset: mouse_subset is_a: UBERON:0013703 ! integumentary projection relationship: part_of UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386913,6 +409653,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010096 name: vocal sac +subset: human_subset +subset: mouse_subset is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386920,6 +409662,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010097 name: M. tarsalis posticus def: "Originates on the medial border of the ligamentum calcanei and inserts along the ventral surface of the tibiale." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386927,6 +409671,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010098 name: M. plantaris profundus def: "Originates on the medial half of the ligamentum calcanei and inserts along the dorsal surface of the aponeurosis plantaris and extends to the level of the base of the prehallux." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386940,6 +409686,8 @@ replaced_by: UBERON:0006323 [Term] id: UBERON:3010100 name: mental gland +subset: human_subset +subset: mouse_subset is_a: UBERON:3010604 ! cranial glands property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386953,12 +409701,16 @@ replaced_by: UBERON:0006322 [Term] id: UBERON:3010103 name: vocal sac glands +subset: human_subset +subset: mouse_subset is_a: UBERON:3010604 ! cranial glands property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010104 name: pectoral glands +subset: human_subset +subset: mouse_subset is_a: UBERON:3010603 ! body gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -386972,6 +409724,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010106 name: tympanic papilla +subset: human_subset +subset: mouse_subset is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387020,6 +409774,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010123 name: finger fringes +subset: human_subset +subset: mouse_subset is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0002389 ! manual digit property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387027,6 +409783,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010124 name: toe fringes +subset: human_subset +subset: mouse_subset is_a: UBERON:3000981 ! limb external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387034,6 +409792,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010125 name: musculus levator bulbi def: "Cranial nerve V innervated; ventral to the eye." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001601 ! extra-ocular muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387048,6 +409808,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010127 name: fringe on postaxial edge of finger IV comment: Kok & Castroviejo-Fisher (2008) Zootaxa. +subset: human_subset +subset: mouse_subset is_a: UBERON:3010123 ! finger fringes property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387055,6 +409817,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010128 name: taeniae tecti marginalis def: "Compose lateral rim of frontoparietal fenestra, ventrally confluent with orbital cartilages, posteriorly confluent with tectum synoticum." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: part_of UBERON:0002241 ! chondrocranium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387063,6 +409827,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010130 name: taenia tecti transversalis def: "Cartilaginous connection that partitions frontoparietal fenestra into anterior and posterior regions. Often persists form larva into adults." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: part_of UBERON:0002241 ! chondrocranium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387071,6 +409837,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010131 name: orbital cartilages def: "Forms lateral walls of braincase, confluent posteriorly with otic capsules via taenia tecti marginalis and anteriorly with lamina orbitonasalis via sphenethmoid commissure." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0001703 ! neurocranium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387079,6 +409847,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010132 name: taenia tecti medialis def: "Cartilaginous connection between the taenia tecti transversalis to the tectum synoticum, and subdividing the parietal fenestra into left and right fenestrae. Often persist from larva to adult." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: part_of UBERON:0002241 ! chondrocranium property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387087,6 +409857,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010136 name: M. cruralis def: "Originates from the anterior surface of the hip joint capsule between the iliacus internus and the pectineus. Inserts by an aponeurosis attaching to the condyles of the femur and on the head of the cruris. This continues over the cruris to cover the tibialis anticus longus and peroneus to insert on the dorsal surface of those muscles." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387102,6 +409874,8 @@ replaced_by: UBERON:0011242 id: UBERON:3010138 name: trabecular horn def: "Anterior extensions." [AAO:curator] +subset: human_subset +subset: mouse_subset synonym: "trabecular horns" RELATED [UBERON:3010138] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0011241 ! ethmoid region @@ -387111,6 +409885,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010142 name: occipital arch def: "Posterior chondrocranium forming ventral and lateral margins of foramen magnum, medial to otic capsules." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:3000993 ! otic and occipital property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387119,6 +409895,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010144 name: odontoids def: "Toothlike processes found on the mandible of some anurans; can be formed by dentary or dentary + mentomeckelian bones; odontoids lack enamel and dentine present in true teeth." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001710 ! lower jaw region property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387172,6 +409950,8 @@ is_obsolete: true id: UBERON:3010163 name: metacarpal fold comment: Kok & Castroviejo-Fisher (2008) Zootaxa. +subset: human_subset +subset: mouse_subset is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0004453 ! metacarpus region property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387180,6 +409960,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010164 name: ulnar fold comment: Kok & Castroviejo-Fisher (2008) Zootaxa. +subset: human_subset +subset: mouse_subset is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0002103 ! hindlimb property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387188,6 +409970,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010166 name: fringe on postaxial edge of toe V comment: Kok & Castroviejo-Fisher (2008) Zootaxa. +subset: human_subset +subset: mouse_subset is_a: UBERON:3010124 ! toe fringes property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387195,6 +409979,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010167 name: metatarsal fold comment: Kok & Castroviejo-Fisher (2008) Zootaxa. +subset: human_subset +subset: mouse_subset is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0000983 ! metatarsus region property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387203,6 +409989,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010168 name: tarsal fringe comment: Kok & Castroviejo-Fisher (2008) Zootaxa. +subset: human_subset +subset: mouse_subset is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0004454 ! tarsal region property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387210,6 +409998,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010170 name: ungual flap +subset: human_subset +subset: mouse_subset is_a: UBERON:3000981 ! limb external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387217,18 +410007,24 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010172 name: subarticular tubercles def: "Is a integumentary structure located on the ventral surface of the hand and/or foot. Found at the junction between, in the hand, the metacarpal and most proximal phalanx of the digit and between phalanges, and in the foot between the metatarsal and most proximal phalanx of the digit and between phalanges." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005813 ! tubercle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010173 name: supernumerary tubercles +subset: human_subset +subset: mouse_subset is_a: UBERON:0005813 ! tubercle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010175 name: circumferential groove +subset: human_subset +subset: mouse_subset is_a: UBERON:3000981 ! limb external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387241,48 +410037,64 @@ is_obsolete: true [Term] id: UBERON:3010178 name: finger glands +subset: human_subset +subset: mouse_subset is_a: UBERON:3010606 ! limb gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010179 name: web glands +subset: human_subset +subset: mouse_subset is_a: UBERON:3010606 ! limb gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010181 name: humeral glands +subset: human_subset +subset: mouse_subset is_a: UBERON:3010606 ! limb gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010182 name: tibial glands +subset: human_subset +subset: mouse_subset is_a: UBERON:3010606 ! limb gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010183 name: femoral glands +subset: human_subset +subset: mouse_subset is_a: UBERON:3010606 ! limb gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010184 name: inner metatarsal tubercle +subset: human_subset +subset: mouse_subset is_a: UBERON:0005813 ! tubercle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010186 name: outer metatarsal tubercle +subset: human_subset +subset: mouse_subset is_a: UBERON:0005813 ! tubercle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010187 name: inner metacarpal tubercle +subset: human_subset +subset: mouse_subset synonym: "thenar tubercle" RELATED [UBERON:3010187] is_a: UBERON:0005813 ! tubercle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387290,6 +410102,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010188 name: outer metacarpal tubercle +subset: human_subset +subset: mouse_subset synonym: "palmar tubercle" RELATED [UBERON:3010188] is_a: UBERON:0005813 ! tubercle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387297,6 +410111,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010189 name: ulnar protuberances +subset: human_subset +subset: mouse_subset is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0002103 ! hindlimb property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387304,6 +410120,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010190 name: tibial protuberances +subset: human_subset +subset: mouse_subset is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0002103 ! hindlimb property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387311,18 +410129,24 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010191 name: calcar anterior +subset: human_subset +subset: mouse_subset is_a: UBERON:3000981 ! limb external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010192 name: calcar posterior +subset: human_subset +subset: mouse_subset is_a: UBERON:3000981 ! limb external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010193 name: prepollical protuberances +subset: human_subset +subset: mouse_subset is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0005880 ! prepollex property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387331,6 +410155,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010194 name: mediale def: "A recurrent variant of salamanders; a rhomboidal cartilage lying immediately postaxial from the centrale or centrale 1." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009879 ! tarsal skeleton @@ -387340,6 +410166,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010195 name: lateral appendix def: "A small lateral diverticulum of the nasal cavity found in anuran larvae." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: located_in UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387348,6 +410176,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010197 name: lateral recess def: "A part of the inferior cavity of the olfactory organ, found in anurans." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387356,6 +410186,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010200 name: vasculature of respiratory integument def: "Blood vessels in respiratory skin." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003504 ! respiratory system blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001004 ! respiratory system @@ -387368,24 +410200,28 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010201 name: dorsal tail tubercle +subset: mouse_subset is_a: UBERON:3000982 ! tail external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010202 name: tail base gland +subset: mouse_subset is_a: UBERON:3000982 ! tail external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010203 name: dorsal tail fin +subset: mouse_subset is_a: UBERON:3000982 ! tail external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010204 name: ventral tail fin +subset: mouse_subset is_a: UBERON:3000982 ! tail external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387394,6 +410230,8 @@ id: UBERON:3010205 name: postminimus def: "A rounded cartilage lying in the postaxial margin of the mesopodium, adjacent to the distal end of the fibulare." [AAO:EJS] comment: Often consider atavistic when present in extant salamnders (Caudata) +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0009879 ! tarsal skeleton @@ -387402,6 +410240,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010209 name: keratinous claw +subset: human_subset +subset: mouse_subset is_a: UBERON:3000981 ! limb external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387443,30 +410283,40 @@ consider: UBERON:0010913 [Term] id: UBERON:3010226 name: postiliac glands +subset: human_subset +subset: mouse_subset is_a: UBERON:3010603 ! body gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010227 name: costal protuberances +subset: human_subset +subset: mouse_subset is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010229 name: costal grooves +subset: human_subset +subset: mouse_subset is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010231 name: costal folds +subset: human_subset +subset: mouse_subset is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010235 name: nuchal groove +subset: human_subset +subset: mouse_subset is_a: UBERON:0006846 ! surface groove relationship: part_of UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387474,6 +410324,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010239 name: subocular groove +subset: human_subset +subset: mouse_subset is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387481,6 +410333,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010240 name: Nobelian rod def: "Either of a pair of cartilaginous rods that support the intromittent organ of male Ascaphus, and are attached to the posteroventral part of the pelvic girdle." [AAO:EJS, http://orcid.org/0000-0002-6601-2165, http://purl.obolibrary.org/obo/uberon/tracker/200] +subset: human_subset +subset: mouse_subset synonym: "Nobelian bone" RELATED [] synonym: "Nobelian element" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure @@ -387494,12 +410348,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010241 name: labial fold +subset: human_subset +subset: mouse_subset is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010242 name: nasolabial groove +subset: human_subset +subset: mouse_subset is_a: UBERON:0006846 ! surface groove relationship: part_of UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387507,6 +410365,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010243 name: ventricular musculature +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002082 ! cardiac ventricle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387522,6 +410382,8 @@ replaced_by: CL:0000017 id: UBERON:3010259 name: phallodeum def: "Eversible phalloid portion of the cloaca that is inserted in the female's vent during copulation. Found in male Caecillians." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008811 ! intromittent organ property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387529,12 +410391,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010260 name: intromittent organ (Ascaphus type) def: "A tail like posterior extension of the cloaca supported by a pair of Nobelian rods." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008811 ! intromittent organ property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010262 name: capitulum of radio-ulna +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006715 ! radio-ulna @@ -387714,6 +410580,8 @@ replaced_by: CL:0000018 [Term] id: UBERON:3010303 name: fasciculated network of fibrils +subset: human_subset +subset: mouse_subset synonym: "coelomic envelope" BROAD [UBERON:3010303] is_a: UBERON:0000478 ! extraembryonic structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387879,6 +410747,8 @@ is_obsolete: true [Term] id: UBERON:3010328 name: equatorial belt +subset: human_subset +subset: mouse_subset is_a: UBERON:0000479 ! tissue relationship: part_of CL:0000365 ! animal zygote property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387941,6 +410811,8 @@ is_obsolete: true [Term] id: UBERON:3010377 name: unicellular gland +subset: human_subset +subset: mouse_subset is_a: UBERON:0003102 ! surface structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387971,6 +410843,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010392 name: mesonephric early proximal tubule +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006553 ! renal duct relationship: part_of UBERON:0000083 ! mesonephric tubule @@ -387980,6 +410854,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010393 name: mesonephric late distal segment def: "The site of bicarbonate resorption in the adult kidney. It is equivalent to the convoluted distal segment of metanephric nephrons." [Xenbase] +subset: human_subset +subset: mouse_subset synonym: "DT1" EXACT [UBERON:3010393] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure @@ -387989,6 +410865,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010394 name: mesonephric late proximal tubule +subset: human_subset +subset: mouse_subset synonym: "late proximal segment" EXACT [UBERON:3010394] synonym: "opisthonephros" RELATED [UBERON:3010394] synonym: "proximal straight segment" RELATED [UBERON:3010394] @@ -388009,6 +410887,8 @@ is_obsolete: true id: UBERON:3010404 name: capillary system of liver def: "The smallest of the blood vessels, parts of the microcirculation, of the liver." [XAO:curator] +subset: human_subset +subset: mouse_subset synonym: "liver capillary" EXACT [UBERON:3010404] is_a: UBERON:0001982 ! capillary is_a: UBERON:0015796 ! liver blood vessel @@ -388018,6 +410898,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010413 name: left channel of ventral aorta +subset: human_subset +subset: mouse_subset is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0003085 ! ventral aorta property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388025,18 +410907,24 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010417 name: posterior palatine artery +subset: human_subset +subset: mouse_subset is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010423 name: larval aorta +subset: human_subset +subset: mouse_subset is_a: UBERON:0000947 ! aorta property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010424 name: right channel of ventral aorta +subset: human_subset +subset: mouse_subset is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0003085 ! ventral aorta property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388049,6 +410937,8 @@ is_obsolete: true [Term] id: UBERON:3010431 name: archenteron floor +subset: human_subset +subset: mouse_subset is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004735 ! archenteron property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388056,6 +410946,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010432 name: archenteron roof +subset: human_subset +subset: mouse_subset synonym: "gastrocoel roof" EXACT [UBERON:3010432] is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004735 ! archenteron @@ -388064,6 +410956,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010436 name: blastocoel roof +subset: human_subset +subset: mouse_subset is_a: UBERON:0002050 ! embryonic structure relationship: adjacent_to UBERON:0000090 ! blastocele property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388071,6 +410965,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010437 name: post-anal gut +subset: human_subset +subset: mouse_subset is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0004735 ! archenteron @@ -388080,6 +410976,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010447 name: M. extensor digitorum communis longus def: "It arises on the lateral epicondyle of the humerus by two heads: the lateral one arises by a thin tendon in common with the m.extensor carpi ulnaris with fibers proximally fused. The internal one arises by a short tendon in common with proximally fused fibers of the m. extensor carpi radialis. It divides distally in two heads: the external head inserts with a long and thin tendon on the metacarpal V, at the same point of insertion of the m. abductor brevis dorsalis digiti V; the internal one inserts by a thin tendon on the proximal region of the metacarpal IV, between the m. extensor brevis superficialis digiti IV and the m. extensor brevis medius digiti IV (Pristimantis bogotensis)." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388087,6 +410985,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010449 name: dorsal marginal zone def: "Marginal zone that is a key embryonic tissue region of the early gastrula stage embryo and that houses the Spemann-Mangold organizer." [ASD:BJB] +subset: human_subset +subset: mouse_subset synonym: "DMZ" EXACT [PMID:17368611] synonym: "organizer" RELATED [UBERON:3010449] synonym: "Spemann organizer" RELATED [UBERON:3010449] @@ -388096,24 +410996,32 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010450 name: dorso-lateral marginal zone +subset: human_subset +subset: mouse_subset is_a: UBERON:0004879 ! marginal zone of embryo property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010451 name: involuting marginal zone +subset: human_subset +subset: mouse_subset is_a: UBERON:0004879 ! marginal zone of embryo property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010452 name: non-involuting marginal zone +subset: human_subset +subset: mouse_subset is_a: UBERON:0004879 ! marginal zone of embryo property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010453 name: ventral marginal zone +subset: human_subset +subset: mouse_subset synonym: "VMZ" EXACT [UBERON:3010453] is_a: UBERON:0004879 ! marginal zone of embryo property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388121,12 +411029,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010454 name: ventro-lateral marginal zone +subset: human_subset +subset: mouse_subset is_a: UBERON:0004879 ! marginal zone of embryo property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010455 name: blastopore lip +subset: human_subset +subset: mouse_subset is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000100 ! blastopore property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388134,6 +411046,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010456 name: lower blastopore lip +subset: human_subset +subset: mouse_subset synonym: "ventral blastopore lip" RELATED [UBERON:3010456] is_a: UBERON:3010455 ! blastopore lip property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388141,6 +411055,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010457 name: upper blastopore lip +subset: human_subset +subset: mouse_subset synonym: "dorsal blastopore lip" RELATED [UBERON:3010457] synonym: "organizer" RELATED [UBERON:3010457] is_a: UBERON:3010455 ! blastopore lip @@ -388149,6 +411065,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010458 name: suprarostral ala +subset: human_subset +subset: mouse_subset synonym: "ala" BROAD [] synonym: "alae" RELATED OMO:0003004 [] is_a: UBERON:0000064 ! organ part @@ -388159,6 +411077,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010463 name: animal cap +subset: human_subset +subset: mouse_subset synonym: "animal ectoderm" RELATED [UBERON:3010463] xref: BTO:0004724 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002050 ! embryonic structure @@ -388168,6 +411088,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010464 name: animal cap inner layer +subset: human_subset +subset: mouse_subset is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:3010463 ! animal cap property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388175,6 +411097,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010465 name: animal cap outer layer +subset: human_subset +subset: mouse_subset is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:3010463 ! animal cap property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388183,6 +411107,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010489 name: muscular artery def: "Part of the external carotid which delivers blood to the mm rectus cervicis and interhyoideus posterior." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0001070 ! external carotid artery relationship: supplies UBERON:3010654 ! rectus cervicis @@ -388192,6 +411118,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010494 name: lateral pretrosal artery def: "Part of the internal carotid which supplies blood to the ear and branches to two additional arteries." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0020550 ! auricular blood vessel @@ -388203,6 +411131,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010496 name: mandibular artery def: "Part of lateral pretrosal artery which supplies blood to the roof of the mouth." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:3010494 ! lateral pretrosal artery @@ -388213,6 +411143,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010498 name: cutaneus artery def: "Artery which supplies blood to the thymus and parotoid region." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388220,6 +411152,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010499 name: coeliaco-mesenteric artery def: "This artery has many branches which supply blood to various organs in the viscus." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001637 ! artery property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388227,6 +411161,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010500 name: gastrico-linealis def: "Major branch which supplies blood to the spleen and dorsal wall of the stomach." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003509 ! arterial blood vessel relationship: part_of UBERON:3010499 ! coeliaco-mesenteric artery property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388235,6 +411171,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010501 name: duodeno-pancreatic artery def: "Major branch which supplies blood to pancreas and duodenum." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001637 ! artery relationship: part_of UBERON:3010499 ! coeliaco-mesenteric artery property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388243,6 +411181,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010502 name: duodeno-hepatic artery def: "Major branch supplying blood via many smaller branches to the liver, duodenum, ventral wall of the stomach, and gall bladder." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001637 ! artery relationship: part_of UBERON:3010499 ! coeliaco-mesenteric artery property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388251,6 +411191,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010503 name: oviduct artery def: "One of three arteries which are part of the renal artery supplying blood to the anterior, middle, and posterior parts of the oviduct." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0001184 ! renal artery relationship: supplies UBERON:0000993 ! oviduct @@ -388260,6 +411202,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010506 name: postcaval vein def: "One of three major veins which enter the sinus venosus." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001638 ! vein property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388267,6 +411211,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010507 name: precaval vein def: "Either of a pair of veins which enter on either side of the sinus venosus." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001638 ! vein property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388274,6 +411220,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010515 name: lateral vein def: "Either of the veins which collect blood from the trunk and skin and drain into the subclavian vein." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001638 ! vein property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388281,6 +411229,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010516 name: cutaneus magnus def: "Anterior part of the lateral vein." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001638 ! vein relationship: part_of UBERON:3010515 ! lateral vein property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388289,6 +411239,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010517 name: ventral abdominal vein def: "A vein formed by the combination of veins in the pelvic region which collects blood from the liver, stomach, intestines, and gall bladder." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0010194 ! hepatic portal system property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388313,6 +411265,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010523 name: M. plantaris longus def: "Originates by two heads, one from the dorso-distal border of the aponeurosis covering the knee and the other from two tendinous branches along the medial border of the knee joint. Inserts by a thick, broad tendon to form the aponeurosis plantaris." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388320,6 +411274,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010524 name: bronchial tube def: "Either of the short tubes which bifurcate posteriorly from the trachea and lead into the lungs." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000489 ! cavitated compound organ relationship: part_of UBERON:0001004 ! respiratory system property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388327,6 +411283,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010525 name: frontoparietal fenestra +subset: human_subset +subset: mouse_subset is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388343,6 +411301,8 @@ id: UBERON:3010529 name: ovisac alt_id: UBERON:3010782 def: "Part of the ovary consisting of a thin sheath of connective tissue enclosing the ovarian follicles." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000992 ! ovary @@ -388367,6 +411327,8 @@ replaced_by: UBERON:0003217 id: UBERON:3010541 name: median pars intermedia def: "Region of the adenohypophysis which secretes melanophore-stimulating hormone, affecting the integumentary chromatophores." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005156 ! reproductive structure @@ -388421,6 +411383,8 @@ replaced_by: CL:0000222 [Term] id: UBERON:3010557 name: triangular process +subset: human_subset +subset: mouse_subset is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:3010138 ! trabecular horn property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388428,6 +411392,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010558 name: quadrato-ethmoid ligament +subset: human_subset +subset: mouse_subset is_a: UBERON:0011648 ! jaw muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388448,18 +411414,24 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010562 name: suboccular foramen +subset: human_subset +subset: mouse_subset is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010563 name: craniopalatine foramen +subset: human_subset +subset: mouse_subset is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010564 name: carotid foramen +subset: human_subset +subset: mouse_subset is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388467,6 +411439,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010565 name: pila preoptica def: "A strut of cartilage extending dorsally from the basal plate and with other similar cartilages forming the sides of the brain case. Posterior to the pila preoptica is the pila antoptica between these two cartilages emerges the optic and trochlear nerves." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton @@ -388475,6 +411449,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010566 name: prootic foramen +subset: human_subset +subset: mouse_subset is_a: UBERON:3000051 ! braincase and otic capsule opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388482,6 +411458,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010576 name: prenasal (amphibians) def: "A dermal bone that forms anterior to the premaxillae between the maxillae and articulates with the nasals posteriorly." [AAO:LT] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388490,6 +411468,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010583 name: basibranchial I def: "Bilaterally unpaired ventral element with which articulates with lateral paired elements." [AAO:DBW] +subset: human_subset +subset: mouse_subset synonym: "Copula I" RELATED [UBERON:3010583] is_a: UBERON:0004740 ! basibranchial bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388498,6 +411478,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010584 name: mandibular arch neural crest def: "Anterior most migratory stream of cranial neural crest." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0003099 ! cranial neural crest @@ -388507,6 +411489,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010585 name: basibranchial II def: "Unpaired medial element that articulates with the anterior basibrachial I (if present)." [AAO:EJS] +subset: human_subset +subset: mouse_subset synonym: "Copula II" RELATED [UBERON:3010585] synonym: "urohyal" RELATED [UBERON:3010585] is_a: UBERON:0004740 ! basibranchial bone @@ -388516,6 +411500,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010586 name: vasa efferentia def: "Sperm travel through these 4 or 5 fine ducts which pass through the mesorchium from the testis to the sexual kidney." [AAO:BMZ] +subset: human_subset +subset: mouse_subset xref: BTO:0002254 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0006946 ! efferent duct property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388524,6 +411510,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010587 name: hyoid arch neural crest def: "Population of cranial neural crest that give rise to hyoid arch elements." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002342 ! neural crest relationship: part_of UBERON:0003099 ! cranial neural crest property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388532,6 +411520,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010589 name: cloacal papilla def: "A small, ridge-like projection from the antero-ventral wall of the cloacal chamber." [AAO:BMZ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000162 ! cloaca property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388540,6 +411530,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010590 name: amphibian cloacal gland def: "A structure that surrounds the cloacal opening, consisting of a mass of coarse tubules." [AAO:BMZ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0012478 ! cloacal gland relationship: part_of UBERON:0000162 ! cloaca property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388554,6 +411546,8 @@ replaced_by: CL:0000574 [Term] id: UBERON:3010599 name: stratum spongiosum +subset: human_subset +subset: mouse_subset is_a: UBERON:0002067 ! dermis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388561,6 +411555,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010602 name: granular gland def: "A gland that contains toxic secretions within the lumen. In frogs and salamanders, this is the larger of the two types of gland, the other being the mucuous gland[Kardong]." [ISBN10:0073040584, UBERON:cjm] +subset: human_subset +subset: mouse_subset synonym: "poison gland" BROAD [ISBN10:0073040584, UBERON:cjm] is_a: UBERON:0002530 ! gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388568,18 +411564,24 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010603 name: body gland +subset: human_subset +subset: mouse_subset is_a: UBERON:3000977 ! body external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010604 name: cranial glands +subset: human_subset +subset: mouse_subset is_a: UBERON:3000972 ! head external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010606 name: limb gland +subset: human_subset +subset: mouse_subset is_a: UBERON:3000981 ! limb external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388594,6 +411596,8 @@ replaced_by: UBERON:0012451 id: UBERON:3010613 name: laryngo-tracheal chamber def: "Muscular vestibule between the pharynx and lungs, lying between the posterior cornua of the hyoid." [AAO:BMZ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001737 ! larynx property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388602,6 +411606,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010614 name: cartilago lateralis of aryngo-tracheal chamber def: "A series of semicircular cartilages on the side of the laryngo-tracheal chamber." [AAO:BMZ] +subset: human_subset +subset: mouse_subset synonym: "cartilago lateralis" BROAD [] is_a: UBERON:0007844 ! cartilage element relationship: located_in UBERON:3010613 ! laryngo-tracheal chamber @@ -388611,6 +411617,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010618 name: constrictor laryngis externus def: "Involved in the movement of the arytenoid cartilages; see also dilatator laryngis and constrictor laryngis anterior." [AAO:BMZ] +subset: human_subset +subset: mouse_subset synonym: "hyolaryngus" RELATED [UBERON:3010618] synonym: "sphincter anterior" RELATED [UBERON:3010618] is_a: UBERON:3000224 ! hyobranchial muscle @@ -388620,6 +411628,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010620 name: dilatator laryngis def: "Involved in the movement of the arytenoid cartilages; see also constrictor laryngis externus and constrictor laryngis anterior." [AAO:BMZ] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000224 ! hyobranchial muscle relationship: has_muscle_insertion UBERON:0001740 ! arytenoid cartilage relationship: innervated_by UBERON:0001759 {source="cjm"} ! vagus nerve @@ -388629,6 +411639,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010621 name: constrictor laryngis anterior def: "Involved in the movement of the arytenoid cartilages; see also constrictor laryngis externus and dilatator laryngis." [AAO:BMZ] +subset: human_subset +subset: mouse_subset synonym: "sphincter posterior" RELATED [UBERON:3010621] is_a: UBERON:3000224 ! hyobranchial muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388639,6 +411651,8 @@ name: subarticular sesamoid alt_id: UBERON:3010674 def: "Is an endochondral structure located on the ventral to the junction between, in the hand, the metacarpal and most proximal phalanx of the digit and between phalanges, and in the foot between the metatarsal and most proximal phalanx of the digit and between phalanges. Typically subarticular sesamoids are found with the subarticular tubercles." [PHENOSCAPE] comment: to edit more later +subset: human_subset +subset: mouse_subset synonym: "subarticular sesamoids" RELATED [] is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0011141 ! appendicular ossicle @@ -388744,6 +411758,8 @@ is_obsolete: true id: UBERON:3010650 name: cephalodorsosubpharyngeus def: "Hyobranchial muscle used in swallowing." [AAO:BMZ] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000224 ! hyobranchial muscle relationship: innervated_by UBERON:0001759 {source="cjm"} ! vagus nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388752,6 +411768,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010651 name: levator bulbi def: "One of the principal muscles used in swallowing." [AAO:BMZ] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000224 ! hyobranchial muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388759,6 +411777,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010652 name: ramus nasalis lateralis def: "Ramule of ophthalmic nerve (see also ramus nasalis medialis). The first branch of ophthalmic nerve gives rise to two ramules that border the naris and innervate the surrounding tissue." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000348 ! ophthalmic nerve @@ -388768,6 +411788,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010653 name: ramus nasalis medialis def: "Ramule of ophthalmic nerve (see also ramus nasalis lateralis). First branch gives rise to two ramules that border the naris and innervate the surrounding tissue." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0000348 ! ophthalmic nerve @@ -388777,6 +411799,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010654 name: rectus cervicis def: "Retracts the hyoid and, therefore, the tongue." [AAO:BMZ] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000224 ! hyobranchial muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388784,6 +411808,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010657 name: subhyoideus def: "Hyobranchial muscle that is a deep, visceral muscle associated with tongue movement." [AAO:BMZ] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000224 ! hyobranchial muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388791,6 +411817,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010659 name: subarcualis rectus I def: "Deep, visceral muscle associated with tongue movement." [AAO:BMZ] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000224 ! hyobranchial muscle relationship: innervated_by UBERON:3010726 ! ramus muscularis of glossopharyngeus nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388799,6 +411827,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010661 name: ramus nasalis internus def: "Distal part of the opthalmicus profundus gives rise to 2 ramules: palatinus and cutaneous." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000348 ! ophthalmic nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388806,6 +411836,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010664 name: m. intertransversarius capitus superior def: "Muscle of the neck involved in the movement of the head, see also m. intertransversarius capitis inferior." [AAO:BMZ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004465 ! musculature of neck property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388813,6 +411845,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010665 name: ramule palatinus def: "Ramules that descends towards the buccal roof and give rise to several short branches that anastomose with palatine ramus of the facial nerve." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:3010661 ! ramus nasalis internus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388820,6 +411854,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010667 name: m. intertransversarius capitis inferior def: "Muscle of the neck involved in the movement of the head, see also m. intertransversarius capitis superior." [AAO:BMZ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004465 ! musculature of neck property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388828,6 +411864,8 @@ id: UBERON:3010668 name: ramules cutaneous alt_id: UBERON:3010672 def: "Many branches of the maxillary ramus that terminate in the integument of the maxillary region." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000377 ! maxillary nerve @@ -388838,6 +411876,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010669 name: trunk maxillary-mandibularis def: "Portion of the trigeminal nerve where the maxillary and mandibular rami run together prior to bifurcating." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011779 ! nerve of head region relationship: branching_part_of UBERON:0001645 ! trigeminal nerve relationship: part_of UBERON:0001645 ! trigeminal nerve @@ -388847,6 +411887,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010671 name: ramule palatonasalis def: "Descends and branches to the buccal roof where it anastomoses with the palatine ramus of the facial nerve." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000377 ! maxillary nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388855,6 +411897,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010673 name: m. rhomboideus anterior def: "Muscle which originates on the posterior surface of the frontoparietal and the anterior part of the dorsal fascia. Inserts on the ventral surface of the anteromedial corner of the suprascapula." [AAO:MEJ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388862,6 +411906,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010675 name: bony nodule of terminal phalanx of hind digit def: "Endochondral element distal to terminal phalanx of hind digit." [AAO:EJS] +subset: human_subset +subset: mouse_subset synonym: "bony nodule" BROAD [] is_a: UBERON:0004248 ! pedal digit bone relationship: part_of UBERON:0001466 ! pedal digit @@ -388871,6 +411917,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010682 name: proximal-most prepollical element def: "Is the proximal-most prepollical element." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4200140 ! prepollical element relationship: part_of UBERON:0012135 ! prepollex skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388879,6 +411927,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010683 name: distal-most prepollical element def: "Is the distal-most prepollical element." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4200140 ! prepollical element relationship: part_of UBERON:0012135 ! prepollex skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388886,6 +411936,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010684 name: proximal-most prehallical element +subset: human_subset +subset: mouse_subset is_a: UBERON:4200141 ! prehallical element relationship: part_of UBERON:3000922 ! prehallux skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388893,6 +411945,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010685 name: distal-most prehallical element +subset: human_subset +subset: mouse_subset is_a: UBERON:4200141 ! prehallical element relationship: part_of UBERON:3000922 ! prehallux skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388901,6 +411955,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010690 name: fetal tooth def: "Type of deciduous dentition found in foetuses and altricial juveniles of some caecilians." [AAO:HM] +subset: human_subset +subset: mouse_subset synonym: "fetal teeth" EXACT [UBERON:3010690] is_a: UBERON:0007115 ! deciduous tooth property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388909,6 +411965,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010691 name: m. opercularis def: "Muscle which arises from the dorsal m. levator scapulae and extends between the operculum and suprascapula." [AAO:MEJ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388916,6 +411974,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010692 name: m. cucullaris def: "Muscle which originates on the prootic and the otic ramus of the squamosal and inserts on the anterior border of the suprascapula." [AAO:MEJ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388923,6 +411983,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010693 name: ramus posterior profundus of V3 def: "In the adult anuran, this innervates the muscles levator mandibulare internus and longus." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0000375 ! mandibular nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388931,6 +411993,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010694 name: m. rhomboideus posterior def: "Muscle which originates from the transverse process of presacral vertebrae IV and insert on the dorso-medial surface of the suprascapula." [AAO:MEJ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388938,6 +412002,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010695 name: m. serratus superior def: "Muscle which originates from the transverse process of presacral vertebrae IV and inserts on the dorso-medial surface of the suprascapula beneath the insertion M. rhomboideus posterior." [AAO:MEJ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388945,6 +412011,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010698 name: m. serratus medius def: "Muscle which originates from the transverse process of presacral vertebrae III and inserts on the central and medial surface of the suprascapula." [AAO:MEJ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388952,6 +412020,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010699 name: m. serratus inferior def: "Muscle which originates as a posterior and anterior head. The posterior head originates from the transverse process and cartilaginous epiphysis of presacral vertebra IV. The anterior head originates on the same parts of presacral vertebrae III. Both insert on the medial surface of the suprascapula near its postero-ventral edge." [AAO:MEJ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388959,6 +412029,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010700 name: levator mandibulae externus def: "Jaw muscle responsible for the closing of the jaw, and innervated by the mandibular nerve." [AAO:BMZ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011648 ! jaw muscle is_a: UBERON:0018544 ! trigeminal nerve muscle relationship: innervated_by UBERON:0000375 ! mandibular nerve @@ -388968,6 +412040,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010701 name: m. latissimus dorsi def: "Muscle which originates from the ventral surface of the dorsal fascia and inserts on the deltoid crest of the humerus." [AAO:MEJ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388975,6 +412049,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010704 name: levator mandibulae longus def: "Jaw muscle responsible for the closing of the jaw, and innvervated by ramus posterior profundus of V3." [AAO:BMZ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011648 ! jaw muscle relationship: innervated_by UBERON:3010693 ! ramus posterior profundus of V3 property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -388997,6 +412073,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010707 name: m. dorsalis scapulae def: "Muscle which originates on the lateral surface of the suprascapulae and inserts on the deltoid crest of the humerus." [AAO:MEJ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389004,6 +412082,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010708 name: levator mandibulae articularis def: "Muscle which is responsible for the closing of the jaw, and is innervated by mandibular nerve." [AAO:BMZ] +subset: human_subset +subset: mouse_subset synonym: "m. adductor mandibulae anterior articularis" RELATED [UBERON:3010708] synonym: "m. adductor mandibulae externus minor" RELATED [UBERON:3010708] synonym: "m. adductor mandibulae posterior" RELATED [UBERON:3010708] @@ -389017,6 +412097,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010709 name: levator mandibulae lateralis def: "Responsible for the closing of the jaw, and innvervated by the mandibular nerve." [AAO:BMZ] +subset: human_subset +subset: mouse_subset synonym: "m. adductor mandibulae posterior articularis" RELATED [UBERON:3010709] is_a: UBERON:0011648 ! jaw muscle is_a: UBERON:0018544 ! trigeminal nerve muscle @@ -389027,6 +412109,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010710 name: m. interscapularis def: "Muscle which originates from the ventro-medial surface of the suprascapula and inserts on the ventral surface of the scapula." [AAO:MEJ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389034,6 +412118,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010711 name: levator mandibulae externus superficialis def: "Responsible for the closing of the jaw." [AAO:BMZ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011648 ! jaw muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389041,6 +412127,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010712 name: levator mandibulae externus profundus def: "Jaw muscle which is responsible for the closing of the jaw." [AAO:BMZ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011648 ! jaw muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389048,6 +412136,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010713 name: m. sternoepicoracoideus def: "Muscle which originates on the anterior border of the distal part of the sternal horn and inserts antero-medially on the postero-dorsal surface of the epicoracoid cartilage." [AAO:MEJ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389061,6 +412151,8 @@ is_obsolete: true [Term] id: UBERON:3010719 name: dilated medial process of metacarpal IV +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0003648 ! metacarpal bone of digit 4 @@ -389070,6 +412162,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010720 name: ramus hyomandibularis def: "The posttrematic branch of the facial nerve, both motor and sensory in function." [AAO:CAM] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0001647 ! facial nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389077,6 +412171,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010721 name: limb villosities +subset: human_subset +subset: mouse_subset is_a: UBERON:3000981 ! limb external integument structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389084,6 +412180,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010722 name: ramus palatinus def: "Sensory branch of facial nerve from palatal region." [AAO:CAM] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001647 ! facial nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389091,6 +412189,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010724 name: levator quadrati def: "Responsible for the closing of the jaw, and innervated by the trigeminal nerve." [AAO:BMZ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011648 ! jaw muscle is_a: UBERON:0018544 ! trigeminal nerve muscle relationship: innervated_by UBERON:0001645 ! trigeminal nerve @@ -389100,6 +412200,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010725 name: M. coracoradialis def: "Muscle which originates from the omosternum and epicoracoid cartilage and inserts on the proximal radioulna." [AAO:MEJ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389107,6 +412209,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010726 name: ramus muscularis of glossopharyngeus nerve def: "Branchiomotor branch of the glossopharyngeus nerve innervating the m. subarcuales rectus I." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011779 ! nerve of head region relationship: innervates UBERON:3010659 ! subarcualis rectus I relationship: part_of UBERON:0001649 ! glossopharyngeal nerve @@ -389116,6 +412220,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010728 name: otic opercular element def: "Round, flat bone or cartilage that lies in the fenestra ovalis and articulates with the columella." [AAO:DBW] +subset: human_subset +subset: mouse_subset synonym: "otic operculum" EXACT [] is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0001032 ! sensory system @@ -389126,6 +412232,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010729 name: M. coracobrachialis longus def: "Muscle which originates as a long belly from the dorsal coracoid near the sternum and inserts on the shaft of the humerus." [AAO:MEJ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389140,6 +412248,8 @@ replaced_by: UBERON:0006720 id: UBERON:3010731 name: M. coracobrachialis brevis def: "Muscle which originates on the dorsal surface of the coracoid and scapula and inserts on the deltoid crest of the humerus." [AAO:MEJ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389147,6 +412257,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010734 name: M. flexor carpi ulnaris def: "Muscle which originates from the medial condyle of the humerus and inserts on the carpus." [AAO:MEJ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389154,6 +412266,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010735 name: ramus anterior of CN VIII def: "Formed by fibers from the anterior semicircular canal and sacculus." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0001648 ! vestibulocochlear nerve @@ -389163,6 +412277,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010736 name: ramus posterior of CN VIII def: "Composed of two rami: a short ventral ramus innervating the cochlea (lagena and papille basilar), and a long dorsal ramus innervating the posterior semicircular canal." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0001648 ! vestibulocochlear nerve @@ -389172,6 +412288,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010737 name: M. palmaris longus def: "Originates from the medial epicondyle of the humerus and inserts on the palmar aponeurosis." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389179,6 +412297,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010738 name: M. palmaris profundis def: "Originates on the ulnar aspect of the radioulna and inserts on the palmar aponeurosis." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389186,6 +412306,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010739 name: M. flexor antibrachii medialis def: "Originates on the medial epicondyle of the humerus and inserts on the radial aspect of the radioulna." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389193,6 +412315,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010740 name: ramus auricularis of the vagus nerve def: "An afferent branch of the vagus nerve." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001759 ! vagus nerve relationship: innervates UBERON:0002218 ! tympanic ring property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389201,12 +412325,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010741 name: M. ulnocarpalis def: "Originates along distal third of the ulna and inserts on the ulnare." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010742 name: interhyoideus posterior +subset: human_subset +subset: mouse_subset is_a: UBERON:0011648 ! jaw muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389214,6 +412342,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010743 name: M. flexor antibrachii lateralis superficialis def: "Originates as a superior and inferior head. The superior head originates on the outer edge of the humerus and the inferior head originates on the lateral epicondyle of the humerus. Both bellies converge to form a tendon, which inserts on the carpus and the extensor tendon of digit I." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389221,6 +412351,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010744 name: M. flexor antibrachii lateralis profundus def: "Originates on the lateral epicondyle of the humerus and inserts on the lower ridge of the radioulna." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010891 ! pectoral complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389228,18 +412360,24 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010745 name: M. coccygeosacralis def: "Originates on the lateral surface of the urostyle and inserts on the neural arch of the sacrum or on the sacral diapophysis." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010746 name: T-shaped terminal phalanx +subset: human_subset +subset: mouse_subset is_a: UBERON:0004300 ! distal phalanx property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010747 name: submentalis +subset: human_subset +subset: mouse_subset is_a: UBERON:0011648 ! jaw muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389247,6 +412385,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010748 name: M. coccygeoiliacus def: "Originates on the lateral surface of the urostyle and passes ventral to the sacral diapophysis to insert on the anterior and medial surfaces of the ilial shaft." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389254,6 +412394,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010749 name: M. iliolumbaris def: "Originates on the anterior and lateral aspect of the ilial shaft and inserts on the transverse processes of presacral vertebrae IV-VII." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389261,6 +412403,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010750 name: descending branch of the vagus nerve def: "Major branch of the vagus supplying parasympathetic innervation to viscera." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004293 ! parasympathetic nerve is_a: UBERON:0011779 ! nerve of head region relationship: part_of UBERON:0000011 ! parasympathetic nervous system @@ -389271,6 +412415,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010751 name: ramus muscularis of vagus nerve def: "Motor nervous branch of the vagus innervating m. subarcualis rectus I." [AAO:CAM] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011779 ! nerve of head region relationship: innervates UBERON:3010659 ! subarcualis rectus I relationship: part_of UBERON:3010754 ! ramus recurrens @@ -389286,6 +412432,8 @@ is_obsolete: true id: UBERON:3010754 name: ramus recurrens def: "Branch of the vagus nerve that separates from the vagus well postcranially, then continues anteriorly to innervate the larynx." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0001759 ! vagus nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389301,6 +412449,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010758 name: M. coccygeocutaneus def: "Originates from the posterior tip of the urostyle and inserts on the cloacal musculature and the overlying skin." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010890 ! pelvic complex muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389315,6 +412465,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010764 name: laryngeus ventralis def: "A branch of the vagus nerve innervating heart, stomach, and lung muscle." [AAO:CAM] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011779 ! nerve of head region relationship: innervates UBERON:0000945 ! stomach relationship: innervates UBERON:0000948 ! heart @@ -389332,12 +412484,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010770 name: dorsal sympathetic chain +subset: human_subset +subset: mouse_subset is_a: UBERON:0000407 ! sympathetic trunk property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010771 name: ventral sympathetic chain +subset: human_subset +subset: mouse_subset is_a: UBERON:0000407 ! sympathetic trunk property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389345,6 +412501,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010772 name: M. dorsalis trunci def: "Originates on the postero-dorsal edge of the postzygopophyses and insert on the dorsal surface of the neural arch of the posterior, adjacent vertebra." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008778 ! epaxial musculature property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389358,6 +412516,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010780 name: pars recta +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000993 ! oviduct @@ -389366,6 +412526,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010781 name: pars convoluta of oviduct +subset: human_subset +subset: mouse_subset synonym: "pars convoluta" BROAD [] is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure @@ -389376,6 +412538,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010783 name: m. oblique externus def: "Originates on the posterior margin of the suprascapula and the epaxial fascia and inserts ventrally on the lateral fascia of the M. rectus abdominus and the ilial shaft." [AAO:MEJ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008777 ! hypaxial musculature property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389383,24 +412547,32 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010784 name: m. oblique internus def: "A muscular sheet in which the fibers run in right angles to those of the m. oblique externus, slanting downward anteriorly. This is one of three sheets composing the flank musculature." [AAO:BJB] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008777 ! hypaxial musculature property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010785 name: m. transversus +subset: human_subset +subset: mouse_subset is_a: UBERON:0008777 ! hypaxial musculature property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010786 name: pars subvertebralis +subset: human_subset +subset: mouse_subset is_a: UBERON:0008777 ! hypaxial musculature property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010787 name: pars transversalis +subset: human_subset +subset: mouse_subset is_a: UBERON:0008777 ! hypaxial musculature property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389408,6 +412580,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010790 name: muscle rectus abdominis superficialis def: "A component of the rectus abdominal muscle that is some taxa." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002461 ! anterior abdominal wall muscle is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002382 ! rectus abdominis muscle @@ -389418,6 +412592,8 @@ id: UBERON:3010792 name: musculus rectus abdominis profundus def: "A component of the rectus abdominal muscle that is some taxa (see comment) forms a disctinct and separate muscle." [PHENOSCAPE] comment: In salamanders (Caudata) the m. rectus abdominis profundus is sometimes continuous with the m. rectus cervicis profundus. In extreme cases (family Plethodontidae) represents an undivided muscle that arises from the psoterior border of the ischium that proceds uninterrupted to the tongue pad. +subset: human_subset +subset: mouse_subset is_a: UBERON:0002461 ! anterior abdominal wall muscle is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002382 ! rectus abdominis muscle @@ -389427,6 +412603,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010793 name: m. ypsiloideus anterior def: "Hypaxial muscle in which contraction elevates the ypsiloid cartilage; originates from the anterior edge of the lateral process of the ypsiloid cartilage and insert on the anteriorly adjacent inscription." [AAO:BMZ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008777 ! hypaxial musculature property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389455,6 +412633,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010797 name: m. ypsiloideus posterior def: "Contraction depresses the ypsiloid cartilage; arises from the anterodorsal edge of the pubis deep to the m. rectus abdominis profundus and spreads anteriorly in a fan shape to insert on the lateral edges of the shaft and the posterior edges of the lateral processes of the ypsiloid cartilage ." [AAO:BMZ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008777 ! hypaxial musculature property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389482,6 +412662,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010802 name: courtship gland +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:3010604 ! cranial glands relationship: part_of UBERON:0001003 ! skin epidermis @@ -389504,6 +412686,8 @@ replaced_by: UBERON:3010201 [Term] id: UBERON:3010813 name: vent glands +subset: human_subset +subset: mouse_subset is_a: UBERON:3010603 ! body gland property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389511,6 +412695,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010815 name: m. flexor indicis superficialis proprius def: "Originates on the internal border of the distal carpal 5-4-3 and inserts on the distal end of phalynx I." [AAO:MEJ] +subset: human_subset +subset: mouse_subset is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389518,6 +412704,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010818 name: hepatic peritoneum def: "Peritoneum that surrounds the liver." [AAO:JMG] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002358 ! peritoneum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389525,6 +412713,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010819 name: gastrointestinal peritoneum def: "Peritoneum that surrounds the stomach and intestines." [AAO:JMG] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002358 ! peritoneum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389555,6 +412745,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010827 name: anterior prenasal cartilage +subset: human_subset +subset: mouse_subset is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage relationship: part_of UBERON:0006813 ! nasal skeleton @@ -389563,6 +412755,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010828 name: commissura terminales of hyoid apparatus +subset: human_subset +subset: mouse_subset synonym: "commissura terminales" BROAD [] is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: part_of UBERON:0010272 ! hyoid apparatus @@ -389571,12 +412765,16 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:3010829 name: sulcus intermedius +subset: human_subset +subset: mouse_subset is_a: UBERON:0006846 ! surface groove property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} [Term] id: UBERON:3010830 name: spicule +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0005884 ! hyoid arch skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389585,6 +412783,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010831 name: occipito-petrosal def: "Fusion of the occipital segment or occipital ring and otic capsule (Francis, 1934)." [AAO:EJS] +subset: human_subset +subset: mouse_subset synonym: "occipital-petrosal" EXACT [] synonym: "occipito-otic" RELATED [] synonym: "otic-occipital complex" RELATED [Phenoscape:DB] @@ -389596,6 +412796,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010832 name: occipital segment def: "Metameric segment forming the back of the skull." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001676 ! occipital bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389604,6 +412806,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010836 name: posterolateral supplementary element def: "A muscle slip arising from the ventral surface of the mandible by means of the ligament near the site of mandibular articulation. The fibers pass anteromedially and attach upon the ventral surfaces of the principal element of the m. intermandibularis (Tyler, 1971)." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010931 ! intermandibularis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389611,6 +412815,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010837 name: apical supplementary element def: "A muscle slip arising from the lingual surface of the mandible on each side of the m. submentalis. The fibers pass posteromedially and attach upon the median raphe of the principal element (Tyler, 1971)." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010931 ! intermandibularis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389618,6 +412824,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010838 name: anterolateral supplementary element def: "A muscle slip arising from the lingual surface of the mandible on the anterior portion of the bone. The fibers pass anteriorly, parallel to the mandible, and attach upon the ventral surface of the m. submentalis (Tyler, 1971)." [AAO:EJS] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010931 ! intermandibularis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389632,6 +412840,8 @@ is_obsolete: true [Term] id: UBERON:3011040 name: first pancreatic bud +subset: human_subset +subset: mouse_subset synonym: "pancreas" BROAD [UBERON:3011040] is_a: UBERON:0002050 ! embryonic structure property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -389671,6 +412881,8 @@ replaced_by: UBERON:0002364 [Term] id: UBERON:3011120 name: early proximal tubule +subset: human_subset +subset: mouse_subset synonym: "PT2" EXACT [UBERON:3011120] is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0005309 ! pronephric nephron @@ -389680,6 +412892,8 @@ creation_date: 2011-04-20T05:19:55Z [Term] id: UBERON:3011121 name: late distal segment +subset: human_subset +subset: mouse_subset is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0005309 ! pronephric nephron @@ -389706,6 +412920,8 @@ replaced_by: GO:0001503 id: UBERON:4000003 name: permanent cartilage def: "Chondrogenic element that is composed of cartilage that is not replaced." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset is_a: UBERON:0007844 ! cartilage element property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} @@ -389762,6 +412978,8 @@ replaced_by: CL:0007001 id: UBERON:4000013 name: mineralized skeletal tissue def: "Skeletal tissue that is mineralized." [XAO:0004039, XAO:EJS] +subset: human_subset +subset: mouse_subset synonym: "mineralized tissue" BROAD [VSAO:0000013] xref: VSAO:0000013 xref: XAO:0004039 @@ -389805,6 +413023,8 @@ replaced_by: CL:0007008 id: UBERON:4000020 name: mineralized extracellular matrix def: "Extracellular matrix that is mineralized." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset is_a: GO:0031012 ! extracellular matrix is_a: UBERON:0000479 ! tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} @@ -389839,6 +413059,8 @@ replaced_by: UBERON:2000474 id: UBERON:4000028 name: integumentary papilla def: "Odontogenic papilla that is located in the integument." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset synonym: "scale papilla" EXACT [VSAO:curator] is_a: UBERON:0001763 ! odontogenic papilla relationship: located_in UBERON:0002199 ! integument @@ -389848,6 +413070,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000030 name: oropharyngeal papilla def: "Odontogenic papilla located along the jaws or pharyngeal skeleton." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset synonym: "oropharyngeal dental papilla" EXACT [VSAO:curator] is_a: UBERON:0001763 ! odontogenic papilla relationship: located_in UBERON:0001729 ! oropharynx @@ -389919,6 +413143,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000053 name: vacuolated notochordal tissue def: "Connective tissue that is matrix-poor with large number of vacuolated cells." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset synonym: "notochord proper" EXACT [VSAO:curator] is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0004120 ! mesoderm-derived structure @@ -389938,6 +413164,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000059 name: avascular GAG-rich matrix def: "Proteinaceous extracellular matrix that is avascular and consists primarily of glycosaminoglycans." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset synonym: "avascular glycosaminoglycan-rich matrix" EXACT [VSAO:curator] synonym: "cartilage matrix" EXACT [VSAO:curator] synonym: "cartilage-like matrix" EXACT [VSAO:curator] @@ -389965,6 +413193,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:4000077 name: non-mineralized chondroid tissue +subset: human_subset +subset: mouse_subset is_a: UBERON:0004755 ! skeletal tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} @@ -389972,6 +413202,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000078 name: chondroid tissue def: "Skeletal tissue that is mineralized, has large chondrocyte-like cells, sparse extracellular matrix, and minimal perichondrium; develops from non-mineralized chondroid tissue." [PSPUB:0000170, TAO:curator] +subset: human_subset +subset: mouse_subset synonym: "chondroid bone tissue" EXACT [VSAO:curator] is_a: UBERON:0004755 ! skeletal tissue relationship: develops_from UBERON:4000077 ! non-mineralized chondroid tissue @@ -389995,6 +413227,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000086 name: secondary cartilage tissue def: "Cartilage tissue that is part of the exoskeleton, deposited adjacent to bone after bone formation." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002418 ! cartilage tissue relationship: part_of UBERON:0010364 ! dermal skeleton property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} @@ -390002,6 +413236,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:4000087 name: cosmine +subset: human_subset +subset: mouse_subset synonym: "cosmoid scale tissue" EXACT [PSPUB:0000170] is_a: UBERON:0010365 ! odontoid tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} @@ -390010,6 +413246,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000088 name: mineralized cartilage tissue def: "Cartilage tissue that is mineralized." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002418 ! cartilage tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} @@ -390017,6 +413255,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000090 name: integumentary skeleton def: "Skeletal subdivision that is part of the extra-oral dermal skeletal system that develops and remains invested within the integument, primarily the dermis." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010912 ! subdivision of skeleton relationship: located_in UBERON:0002199 ! integument relationship: part_of UBERON:0010364 ! dermal skeleton @@ -390042,12 +413282,16 @@ replaced_by: CL:00007013 id: UBERON:4000097 name: orthodentine def: "Odontoid tissue that typically contains tubules and is acellular." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010365 ! odontoid tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} [Term] id: UBERON:4000102 name: osteodentine +subset: human_subset +subset: mouse_subset is_a: UBERON:0010365 ! odontoid tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} @@ -390075,6 +413319,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000106 name: vasodentine def: "Dentine tissue that lacks dentine tubules and that is penetrated by blood capillaries." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset synonym: "vascular dentine" EXACT [VSAO:curator] is_a: UBERON:0010365 ! odontoid tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} @@ -390092,6 +413338,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000108 name: non-mineralized hyaline cartilage tissue def: "Hyaline cartilage tissue that is not mineralized." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001994 ! hyaline cartilage tissue is_a: UBERON:0011589 ! non-mineralized cartilage tissue property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} @@ -390100,6 +413348,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000109 name: mineralized hyaline cartilage tissue def: "Hyaline cartilage tissue that is mineralized." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001994 ! hyaline cartilage tissue is_a: UBERON:4000013 ! mineralized skeletal tissue is_a: UBERON:4000088 ! mineralized cartilage tissue @@ -390110,6 +413360,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000115 name: mineralized bone tissue def: "Bone tissue mineralized with hydroxyapatite." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002481 ! bone tissue is_a: UBERON:4000013 ! mineralized skeletal tissue intersection_of: UBERON:0002481 ! bone tissue @@ -390140,6 +413392,8 @@ replaced_by: CL:0001040 id: UBERON:4000118 name: cellular bone tissue def: "Mineralized bone tissue that always includes non-terminally differentiated osteoblasts and osteocytes." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4000115 ! mineralized bone tissue intersection_of: UBERON:4000115 ! mineralized bone tissue @@ -390154,6 +413408,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000119 name: non-mineralized avascular GAG-rich matrix def: "Avascular GAG-rich matrix that is not mineralized." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset synonym: "non-mineralized cartilage" EXACT [VSAO:curator] is_a: UBERON:4000059 ! avascular GAG-rich matrix relationship: part_of UBERON:0011589 ! non-mineralized cartilage tissue @@ -390163,6 +413419,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000120 name: mineralized avascular GAG-rich matrix def: "Avascular GAG-rich matrix that is mineralized." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset is_a: UBERON:4000020 ! mineralized extracellular matrix is_a: UBERON:4000059 ! avascular GAG-rich matrix relationship: part_of UBERON:4000088 ! mineralized cartilage tissue @@ -390172,6 +413430,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000122 name: acellular bone tissue def: "Mineralized bone tissue that has terminally differentiated osteoblasts but lacks osteocytes." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4000115 ! mineralized bone tissue relationship: has_part CL:0001039 ! terminally differentiated osteoblast @@ -390181,6 +413441,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000123 name: odontode tissue def: "Skeletal tissue that is avascular tubular mineralized matrix, primarily made of dentine that is deposited by odontoblasts that are excluded from the matrix; develops from pre-dentine tissue." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset synonym: "dental tissue" RELATED [VSAO:curator] is_a: UBERON:0010365 ! odontoid tissue relationship: develops_from UBERON:0011587 ! pre-dentine @@ -390190,6 +413452,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000134 name: ossified tendon def: "Sesamoid that develops within a tendon, distal to an articulation or joint." [PSPUB:0000169] +subset: human_subset +subset: mouse_subset synonym: "intratendonous ossification" RELATED [VSAO:0000134] is_a: UBERON:0001479 ! sesamoid bone property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} @@ -390206,6 +413470,8 @@ replaced_by: GO:0036072 id: UBERON:4000138 name: ligamentous replacement element def: "Replacement element that forms as a replacement of a ligament." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010522 ! replacement element property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} @@ -390256,6 +413522,8 @@ replaced_by: GO:0036073 id: UBERON:4000146 name: transient cartilaginous element def: "Chondrogenic element that is composed of cartilage during development and has the potential to become replaced by another tissue." [PSPUB:0000170] +subset: human_subset +subset: mouse_subset synonym: "endochondral replacement cartilage" EXACT [VSAO:0000146] is_a: UBERON:0007844 ! cartilage element is_a: UBERON:0010363 ! endochondral element @@ -390266,6 +413534,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000159 name: ossified ligament def: "Sesamoid that develops within a ligament, distal to an articulation or joint." [GO_REF:0000034, PSPUB:0000169] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001479 ! sesamoid bone property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} @@ -390274,6 +413544,8 @@ id: UBERON:4000160 name: anocleithrum def: "Dermal bone of pectoral girdle that is dorsal to and articulates with the cleithrum." [VSAO:curator] comment: In sarcopterygians; analogous in position to postcleithrum in actinopterygians. +subset: human_subset +subset: mouse_subset synonym: "anocleithra" EXACT OMO:0003004 [VSAO:0000160] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone @@ -390382,6 +413654,8 @@ id: UBERON:4000171 name: scapular complex def: "Skeletal subdivision of dermal bones that may include the anterolateral plate (AL), the spinal process (Sp), and anteroventral plate (AV) and other dermal bones that are part of the pectoral girdle." [VSAO:curator] comment: A scapular complex is described in placoderms (Goujet and Young, 1995). +subset: human_subset +subset: mouse_subset synonym: "pectoral complex" BROAD [ISBN:3-89937-052-X] is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0007831 ! pectoral girdle skeleton @@ -390484,6 +413758,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4100000 name: skeletal element projection def: "Anatomical projection that is composed of bone or cartilage tissue." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004529 ! anatomical projection intersection_of: UBERON:0004529 ! anatomical projection intersection_of: part_of UBERON:0004765 ! skeletal element @@ -390507,6 +413783,8 @@ id: UBERON:4100003 name: articular surface def: "Anatomical surface that is part of a skeletal element and articulates with another skeletal element." [PHENOSCAPE:NI] comment: Not necessarily part of a joint. +subset: human_subset +subset: mouse_subset is_a: UBERON:0006984 ! anatomical surface relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0004765 ! skeletal element @@ -390515,6 +413793,8 @@ relationship: part_of UBERON:0004765 ! skeletal element id: UBERON:4100004 name: ischial peduncle def: "Bony projection (peduncle) that is located on the posterior portion of the ilium, posterior to the acetabulum." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 @@ -390525,6 +413805,8 @@ id: UBERON:4100005 name: second phalanx def: "Second most proximal phalanx in manual or pedal digits." [PHENOSCAPE] comment: Consider merging with 'intermediate phalanx' +subset: human_subset +subset: mouse_subset is_a: UBERON:0003221 ! phalanx [Term] @@ -390541,6 +413823,8 @@ id: UBERON:4100007 name: pectoral articular facet def: "Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Based on Goujet and Young (1995)." [PHENOSCAPE:pm] comment: Should be part of some joint. +subset: human_subset +subset: mouse_subset is_a: UBERON:4100003 ! articular surface relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0004753 ! scapulocoracoid @@ -390558,6 +413842,8 @@ replaced_by: UBERON:0009567 id: UBERON:4100009 name: pedal digit 7 phalanx def: "Phalanx of the 7th pedal digit." [PHENOSCAPE:AD] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001449 ! phalanx of pes intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0012137 ! pedal digit 7 @@ -390569,6 +413855,8 @@ id: UBERON:4100010 name: post-glenoid process def: "Distinct notch ventral to the glenoid." [PHENOSCAPE:NI] comment: Fix def'n +subset: human_subset +subset: mouse_subset is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0004753 ! scapulocoracoid @@ -390577,6 +413865,8 @@ relationship: part_of UBERON:0004753 ! scapulocoracoid id: UBERON:4100011 name: postacetabular buttress def: "A bony process at the distal margin of the acetabulum formed by the ischium and/or the ischial peduncle of the ilium." [PHENOSCAPE:AD] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 @@ -390586,6 +413876,8 @@ relationship: part_of UBERON:0001269 ! acetabular part of hip bone id: UBERON:4100012 name: postacetabular zone def: "Region of the ilium posterior and dorsal to the acetabulum." [PHENOSCAPE:AD] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 @@ -390595,6 +413887,8 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4100013 name: postcoracoid def: "The posterior of the two coracoid elements found in basal tetrapods. Corresponds directly to the 'coracoid' of synapsids." [PHENOSCAPE:AD] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010363 ! endochondral element relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0001421 ! pectoral girdle region @@ -390616,6 +413910,8 @@ is_obsolete: true id: UBERON:4100016 name: posterior process of ilium def: "A posteriorly directed bony projection from the ilium that is the attachment site of the iliofibularis muscle (see Sumida, 1997)." [PHENOSCAPE:AD] +subset: human_subset +subset: mouse_subset synonym: "posterior iliac process" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection @@ -390626,6 +413922,8 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4100100 name: parasphenoid flange def: "Lateral expansion of the parasphenoid." [PHENOSCAPE:BC] +subset: human_subset +subset: mouse_subset synonym: "parasphenoid wing" BROAD [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -390648,6 +413946,8 @@ relationship: surrounds UBERON:0008812 ! hemipenis id: UBERON:4100112 name: radial facet def: "Facet to accommodate the radius on the distal end of the humerus." [PHENOSCAPE:NI] +subset: human_subset +subset: mouse_subset is_a: UBERON:4200214 ! epipodial facet is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 @@ -390657,6 +413957,8 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4100113 name: dermal intracranial joint def: "Hinge in the skull skeleton to allow for kinetic movement of different parts." [PHENOSCAPE:NI] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000982 ! skeletal joint relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 @@ -390664,6 +413966,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 id: UBERON:4100114 name: anterior distal condyle of femur def: "Anatomical projection in the distal region of the femur." [PHENOSCAPE:NI] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle @@ -390674,6 +413978,8 @@ relationship: part_of UBERON:0000981 ! femur id: UBERON:4100115 name: spiracular notch def: "Soft tissue notch/opening lying on a spiracle." [PHENOSCAPE:NI] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0004704 ! bone fossa @@ -390682,6 +413988,8 @@ relationship: part_of UBERON:0004704 ! bone fossa id: UBERON:4100116 name: posterior distal condyle of femur def: "Anatomical projection in the posterior/distal region of the femur." [PHENOSCAPE:NI] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle @@ -390692,6 +414000,8 @@ relationship: part_of UBERON:0000981 ! femur id: UBERON:4100117 name: presacral rib def: "Rib located anterior to the sacral region." [PHENOSCAPE:NI] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002228 ! rib relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 @@ -390699,6 +414009,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 id: UBERON:4100118 name: trunk rib def: "Rib located in the trunk (ribcage) area (i.e. excluding cervical and caudal axial series." [PHENOSCAPE:NI] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002228 ! rib relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 @@ -390706,6 +414018,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 id: UBERON:4100119 name: extratemporal bone def: "Extratemporal bone: Skull bone in the posterior half of the cranium, bordering the squamosal and opercular." [PHENOSCAPE:NI] +subset: human_subset +subset: mouse_subset synonym: "postspiracular" EXACT [] is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 @@ -390732,6 +414046,8 @@ relationship: part_of UBERON:0007812 ! post-anal tail id: UBERON:4200000 name: medial blade of ilium def: "The medial surface of the iliac blade. Origin site of the iliofemoralis internus muscle and its homologues." [PHENOSCAPE:ad] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -390742,6 +414058,8 @@ id: UBERON:4200001 name: postpubis def: "The region of the pubis posterior to the acetabulum." [PHENOSCAPE] comment: In some non-avian reptile this terminology refers to a distinct rear facing process of the pubis. In avians and some closely related theropod taxa this term is used to denote the pubis itself which has been rotated to face backwards. +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -390767,6 +414085,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200004 name: intertrochanteric fossa def: "Depression on the ventreal side of the femoral head. Associated with the pubioischiofemoralis externus muscle." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004704 ! bone fossa relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur @@ -390782,6 +414102,8 @@ id: UBERON:4200006 name: infraglenoid buttress def: "An anatomical projection ventral to the glenoid fossa on the scapulocoracoid that abuts on the cliethrum (if present)." [PHENOSCAPE] comment: Can exist in taxa without a cleithrum. +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:4100000 ! skeletal element projection relationship: adjacent_to UBERON:0006657 ! glenoid fossa @@ -390792,6 +414114,8 @@ relationship: part_of UBERON:0004753 ! scapulocoracoid id: UBERON:4200007 name: transverse pelvic ridge def: "The transverse pelvic ridge is a short crest directly anterior to, and not extending posterior to, the prominent supra-acetabular buttress from Pawley and Warren 2006." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001273 ! ilium @@ -390800,6 +414124,8 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200008 name: inter-clavicle joint def: "Joint that articulates left and right clavicles." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "interclavicle joint" EXACT [] xref: PHENOSCAPE:wd is_a: UBERON:0008114 ! joint of girdle @@ -390818,6 +414144,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200010 name: ventral humeral ridge def: "A distinct bony ridge on ventralsurface of the humeral shaft that corresponds to the attachment site of the pectoralis muscle." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "pectoral process" RELATED [] xref: PHENOSCAPE:ad is_a: UBERON:0004120 ! mesoderm-derived structure @@ -390829,6 +414157,8 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200011 name: pedal centrale def: "A centrale found in the pes." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "navicular bone of pes" BROAD [] xref: PHENOSCAPE:AD is_a: UBERON:0001447 ! tarsal bone @@ -390839,6 +414169,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200012 name: ectepicondylar flange def: "Flange present of the distal region of the humerus, associated with extensor musculature of forelimb." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset xref: PHENOSCAPE:ni is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection @@ -390850,6 +414182,8 @@ relationship: part_of UBERON:0006807 ! ectepicondyle of humerus id: UBERON:4200013 name: flexor surface def: "Surface of a long bone that possess the flexor muscle attachment sites." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset xref: PHENOSCAPE:ni is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -390859,6 +414193,8 @@ relationship: part_of UBERON:0002495 ! long bone id: UBERON:4200014 name: lateral tuber of ulna def: "Projection on the lateral side of proximal part of the ulna." [PHENOSCAPE:NI] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -390869,6 +414205,8 @@ id: UBERON:4200015 name: inner digits of foot def: "The medial most digits of the pes." [PHENOSCAPE] comment: In most tetrapods this corresponds to digits II-IV, but the exact identiy of digits in this region varies taxonomically based on digit numbering. +subset: human_subset +subset: mouse_subset xref: PHENOSCAPE:ad is_a: UBERON:0005445 ! segment of pes relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -390895,6 +414233,8 @@ is_obsolete: true id: UBERON:4200018 name: calcaneal tuber def: "An enlargement of the distal region of the calcaneum that corresponds to the attachment site for the foot extensor muscles." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset xref: PHENOSCAPE:ad is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection @@ -390906,6 +414246,8 @@ relationship: part_of UBERON:0001450 ! calcaneus id: UBERON:4200019 name: preacetabular process def: "Process on ilium located anteriorly to acetabulum." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset xref: PHENOSCAPE:ad is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection @@ -390916,6 +414258,8 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200020 name: suprascapular fossa def: "Fossa on the medial surface on the scapula above the glenoid." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset xref: PHENOSCAPE:ad is_a: UBERON:0004704 ! bone fossa relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -390925,6 +414269,8 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:4200021 name: astragalus-calcaneum unit def: "Osteological unit consisting of the astragalus and calcaneum." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset xref: PHENOSCAPE:NI is_a: UBERON:0000075 ! subdivision of skeletal system is_a: UBERON:0004120 ! mesoderm-derived structure @@ -390938,6 +414284,8 @@ id: UBERON:4200022 name: extracleithrum def: "Narrow bone that lies ventral to the level of insertion of the pectoral fin and is sutured to the posterior edges of both the clavicle and cleithrum. Based on Forey 1998." [PHENOSCAPE] comment: The presence of this bone is a synapomorphy of coelacanth fishes. +subset: human_subset +subset: mouse_subset is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -390960,6 +414308,8 @@ is_obsolete: true id: UBERON:4200025 name: ascending process of the astragalus def: "Flattened process of the dorsl surface of the astragalus which contacts the tibia anteriorly." [PHENOSCAPE:NI] +subset: human_subset +subset: mouse_subset xref: PHENOSCAPE:NI is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection @@ -390970,6 +414320,8 @@ relationship: part_of UBERON:0002395 ! talus id: UBERON:4200026 name: supraglenoid foramen def: "Foramen that perforates supraglenoid buttress." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005744 ! bone foramen relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:4200027 ! supraglenoid buttress @@ -390979,6 +414331,8 @@ id: UBERON:4200027 name: supraglenoid buttress def: "A bony projection dorsal to the glenoid articulation on the scapulocoracoid." [PHENOSCAPE] comment: In basal tetrapodomorphs this structure braces the scapula on the cleithrum, but this function is lost in derived tetrapods. +subset: human_subset +subset: mouse_subset is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0004753 ! scapulocoracoid @@ -390987,6 +414341,8 @@ relationship: part_of UBERON:0004753 ! scapulocoracoid id: UBERON:4200028 name: adductor blade def: "A prominent ridge in basal tetrapods on the ventral side of the femur that includes the fourth trochater, internal trochanter and the adductor crest (based on Coates, 1996)." [PHENOSCAPE:AD] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -390996,6 +414352,8 @@ relationship: part_of UBERON:0000981 ! femur id: UBERON:4200029 name: adductor crest def: "A bony crest on venteral side of femur that is the attachment site for the adductor muscles." [PHENOSCAPE:AD] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391006,6 +414364,8 @@ relationship: part_of UBERON:4200028 ! adductor blade id: UBERON:4200030 name: antitrochanter def: "Raised surface at the posterior portion of the acetabulum (see Nesbitt, 2011)." [PHENOSCAPE:NI] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391017,6 +414377,8 @@ id: UBERON:4200031 name: caudalipuboischiotibialis def: "Muscle that is associated with tail flexion. Orginates on one of the first post sacral vertebrae posteriorly and inserts on the posterior edge of the m.puboischiotibialis. (modified from Duellman and Trueb 1994)." [PHENOSCAPE] comment: To Do: add attachment site terms to ext +subset: human_subset +subset: mouse_subset is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391024,6 +414386,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200032 name: clavicle blade def: "Expanded and flattened ventral region of clavicle bone." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005055 ! zone of long bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001105 ! clavicle bone @@ -391041,6 +414405,8 @@ relationship: part_of UBERON:0004741 ! cleithrum id: UBERON:4200034 name: cnemial crest def: "Longitudnal bony ridge on tibia, attachment site of the major extensor muscle of the hind limb." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391050,6 +414416,8 @@ relationship: part_of UBERON:0000979 ! tibia id: UBERON:4200036 name: internal trochanter def: "A boney projection on the internal diaphysis of the femur anterior or medial to the intertrochanteric fossa, below the femoral head. Muscle attachment site for ventral muscle mass notably the puboischiofemoralis externus. Modified from Romer 1956." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391059,6 +414427,8 @@ relationship: part_of UBERON:0000981 ! femur id: UBERON:4200037 name: supinator process def: "A bony process that corresponds to the attachment site for the forelimb supinator muscles in tetrapods, distal to the deltopectoral crest and anterior to the radial condyle." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391068,6 +414438,8 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200038 name: subscapular fossa def: "A marked depression on the medial side of the scapula blade, often opposite the glenoid region." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004704 ! bone fossa relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula @@ -391076,6 +414448,8 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:4200039 name: supraacetabular buttress def: "A bony protuberance dorsal to the acetabulum on the ilium, confluent with the supraacetabular crest (when present). Acts as a bone brace to prevent excessive femoral abduction and the origin site for part of the M. iliofemoralis." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "acetabular buttress" BROAD [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -391094,6 +414468,8 @@ relationship: part_of UBERON:0004743 ! coracoid bone id: UBERON:4200041 name: aponeurosis palmaris def: "The palmar aponeurosis is a fibrotendinous complex that functions as the tendinous extension of the palmaris longus, when present, and as a strong stabilizing structure for the palmar skin of the hand. It has five longitudinal slips that project into the base of each digit and a deeper transverse portion that crosses the palm at the proximal end of the metacarpals bones (from Wikipedia)." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006614 ! aponeurosis relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0002398 ! manus @@ -391102,6 +414478,8 @@ relationship: part_of UBERON:0002398 ! manus id: UBERON:4200042 name: brevis shelf def: "Anatomical projection on the ilium, anchoring caudal muscles." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391111,6 +414489,8 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200043 name: brevis fossa def: "Fossa located on the brevis shelf." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004704 ! bone fossa relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -391120,6 +414500,8 @@ relationship: part_of UBERON:4200042 ! brevis shelf id: UBERON:4200044 name: articular surface for the calcaneum on the astragalus def: "Contact surface between the calcaneum and the astragalus located on the astragalus." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391129,6 +414511,8 @@ relationship: part_of UBERON:0002395 ! talus id: UBERON:4200045 name: articular surface for the astragalus on the calcaneum def: "Contact surface between the calcaneum and the astragalus located on the calcaneum." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391138,6 +414522,8 @@ relationship: part_of UBERON:0001450 ! calcaneus id: UBERON:4200046 name: astragalo-calcaneal canal def: "The astragalo-calcaneal canal forms a foramen between the articulated astragalus and calcaneum when the canal is ossified (Nesbitt, 2011)." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004705 ! fenestra intersection_of: UBERON:0004705 ! fenestra intersection_of: part_of UBERON:4200021 ! astragalus-calcaneum unit @@ -391148,6 +414534,8 @@ relationship: part_of UBERON:4200021 ! astragalus-calcaneum unit id: UBERON:4200047 name: attachment site def: "Morphological structure denoting the extent of an attachment site for a soft tissue on a skeletal element." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000061 ! anatomical structure relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0004765 ! skeletal element @@ -391157,6 +414545,8 @@ id: UBERON:4200048 name: bicipital crest def: "Anatomical projection that is an expansion on the proximal region of the humerus." [PHENOSCAPE] comment: Origin of the aponeursis of humeral head of the M. biceps brachii. From Bamuel et al. 1993 +subset: human_subset +subset: mouse_subset synonym: "crista bicipitalis" EXACT [] synonym: "crista tuberculi majoris" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure @@ -391167,6 +414557,8 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200049 name: cartilago sesamoides def: "A sesamoid found in the found in the ligamentum calcanei of a wide variety of frogs. (based on Nussbaum, R. A. 1982." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001479 ! sesamoid bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000211 ! ligament @@ -391175,6 +414567,8 @@ relationship: part_of UBERON:0000211 ! ligament id: UBERON:4200050 name: cotyla def: "A cup shaped articular surface on a bone." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4100003 ! articular surface relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391182,6 +414576,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200051 name: cotyloid notch def: "A notch or opening in the ventral part of the acetabular rim." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391191,6 +414587,8 @@ relationship: part_of UBERON:0006802 ! acetabular rim id: UBERON:4200052 name: crista tibiofibularis def: "Tuberosity on the posterior surface of the lateral femoral condyle." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391232,6 +414630,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200060 name: ectepicondylar foramen def: "Formen present on the ectepicondyle of the humerus." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391256,6 +414656,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200063 name: ectocondylar tubercle def: "Posteriorly projecting bony tubercle that is located proximal to the lateral condyle of the femur." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391265,6 +414667,8 @@ relationship: part_of UBERON:0000981 ! femur id: UBERON:4200068 name: prepubic element def: "A small plate of cartilage synchondrotically united with the pubis. Modified from Baez and Harrison 2005." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391275,6 +414679,8 @@ id: UBERON:4200069 name: sternal keel def: "The vertical plate of bone or cartilage attached to the median line of the sternum. Modified from Baumel et al. 1993." [PHENOSCAPE] comment: An enlarged ossified keel is found in most, but not all, volant birds. +subset: human_subset +subset: mouse_subset synonym: "carina" EXACT [] synonym: "carina sterni" EXACT [] synonym: "crista sterni" EXACT [] @@ -391304,6 +414710,8 @@ id: UBERON:4200076 name: trunk armor pectoral fenestra def: "An opening in the dermal armour of basal gnathostomes that encloses the pectoral fins. (modified from Young 2010)." [PHENOSCAPE] comment: Disjoint from 'pectoral fenestra' of Amphibians (AAO_0000779). +subset: human_subset +subset: mouse_subset synonym: "trunk armour pectoral fenestra" EXACT [] is_a: UBERON:3000755 ! pectoral girdle opening relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391318,6 +414726,8 @@ is_obsolete: true id: UBERON:4200078 name: clavicular facet def: "A notch for the articulation of the clavicle on other girdle elements." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0007831 ! pectoral girdle skeleton @@ -391327,6 +414737,8 @@ id: UBERON:4200079 name: dorsal iliac process def: "Posteriordorsal process of the ilium." [PHENOSCAPE] comment: It spresences gives the ilium a 'double headed' appearence. +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391336,6 +414748,8 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200080 name: fibular crest def: "A bony projection on the lateral side of the tibia, allowing contact between the later and the fibula." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391355,6 +414769,8 @@ id: UBERON:4200083 name: postaxial centrale def: "Centrale in the postaxial region of the mesopodium." [PHENOSCAPE] comment: The paried limbs have a main axis running proximodistally trough the stylopodiam element (humerus/femur). from the zeugopodium distally elements can be divided into preaxial (on the radius/tibia side) and postaxial (ulna/fibula) sides. The exact orientation of these axises vary depending on the orientation of the limb in a neutral position. +subset: human_subset +subset: mouse_subset is_a: UBERON:0012131 ! centrale relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391363,6 +414779,8 @@ id: UBERON:4200084 name: preaxial centrale def: "Centrale in the preaxial side of the mesopodium." [PHENOSCAPE] comment: The paried limbs have a main axis running proximodistally trough the stylopodiam element (humerus/femur). from the zeugopodium distally elements can be divided into preaxial (on the radius/tibia side) and postaxial (ulna/fibula) sides. The exact orientation of these axises vary depending on the orientation of the limb in a neutral position. +subset: human_subset +subset: mouse_subset is_a: UBERON:0012131 ! centrale relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391377,6 +414795,8 @@ is_obsolete: true id: UBERON:4200086 name: iliac neck def: "A constricted region of the ilium which is dorsal to the acetabulular region. Prior to the expansion of the iliac blade." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "neck of ilium" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ @@ -391387,6 +414807,8 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200087 name: iliac peduncle def: "Bony projection that is part of the dorsal surface of the ischim, where it articulates with the ilium." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391396,6 +414818,8 @@ relationship: part_of UBERON:0001274 ! ischium id: UBERON:4200088 name: iliac peduncle of the pubis def: "Bony projection that is part of the dorsal surface of the pubis where it meets the ilium." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391405,6 +414829,8 @@ relationship: part_of UBERON:0001275 ! pubis id: UBERON:4200089 name: fibular facet of the calcaneum def: "Articular surface on calcaneum for the fibula." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391414,6 +414840,8 @@ relationship: part_of UBERON:0001450 ! calcaneus id: UBERON:4200090 name: fibular facet of the astragalus def: "Articular surface on the astragalus for the fibula." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391423,6 +414851,8 @@ relationship: part_of UBERON:0002395 ! talus id: UBERON:4200091 name: ethomosphenoid region def: "Region consisitng of the ethmoid and sphenoid bones." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 ! neurocranium bone @@ -391434,6 +414864,8 @@ relationship: part_of UBERON:0001679 ! ethmoid bone id: UBERON:4200092 name: flexor tubercle of ungual def: "Eminence on the proximo-dorsal surface of the ungual, for attachment of flexor muscles." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0013703 ! integumentary projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:3010209 ! keratinous claw @@ -391450,6 +414882,8 @@ id: UBERON:4200094 name: inner digits of hand def: "The medial most digit of the manus skeleton." [PHENOSCAPE] comment: In most taxa this is digits II-IV, but this varies based on the number of digits and thier identity in the taxa examined. +subset: human_subset +subset: mouse_subset is_a: UBERON:0005451 ! segment of manus relationship: part_of UBERON:0012140 ! digitopodium region @@ -391457,6 +414891,8 @@ relationship: part_of UBERON:0012140 ! digitopodium region id: UBERON:4200095 name: infraspinous process def: "Process on infraspinous (region below the spine) of scapula." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula @@ -391465,6 +414901,8 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:4200096 name: intercondylar fossa def: "The deep fossa between the femoral condyles in which the cruciate ligaments are attached. From Medilexicon.com." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "femoral groove" EXACT [] synonym: "femoral sulcus" EXACT [] synonym: "femoropatellar groove" EXACT [] @@ -391485,6 +414923,8 @@ relationship: part_of UBERON:0004406 ! distal epiphysis of femur id: UBERON:4200097 name: intermediate spine def: "Spine ventrally located on the body and not part of the pectoral, pelvic or anal fins." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004529 ! anatomical projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391492,6 +414932,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200098 name: ischial foot def: "Expansion of the distal region of the ischium." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391501,6 +414943,8 @@ relationship: part_of UBERON:0001274 ! ischium id: UBERON:4200099 name: lateral extrascapular def: "The most lateral of the paired series of extrascapular bones and is the bone where the intersection of the otic, postotic and extrascapular or supratemporal canals occur." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:2000663 ! extrascapula relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391508,6 +414952,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200100 name: latissimus dorsi process def: "A bony process on the dorsal side of the proximal region of the humerus which corresponds to the insertion site of the Latissimus dorsi muscle." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391517,6 +414963,8 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200101 name: m.scapulotriceps def: "Muscle that represents one branch of the larger triceps brachii, origination site near the glenoid fossa on the scapula." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003662 ! forelimb muscle relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391525,6 +414973,8 @@ id: UBERON:4200102 name: median dorsal plate def: "Dermal armour plate that is situated behind the head and constitute the dorsal most portion of the dermal shoulder girdle. Modified from Brazeau 2009, Young 2010." [PHENOSCAPE] comment: Present in some basal gnathostomes. +subset: human_subset +subset: mouse_subset is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391534,6 +414984,8 @@ relationship: part_of UBERON:4000171 ! scapular complex id: UBERON:4200103 name: median extrascapular def: "The medial of the the paired series of extrascapular bones which carries the extrascapular or supratemporal canal." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:2000663 ! extrascapula relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391541,6 +414993,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200104 name: metacarpal extensor pit def: "Pits located on the proximodorsal part of metacarpals denoting the attachemnt sites for ligaments." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004704 ! bone fossa relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0002374 ! metacarpal bone @@ -391549,6 +415003,8 @@ relationship: part_of UBERON:0002374 ! metacarpal bone id: UBERON:4200105 name: nerve foramen def: "Opening and/or passageway for nerve(s) in bone." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004111 ! anatomical conduit relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391557,6 +415013,8 @@ id: UBERON:4200106 name: muscle scar def: "A distinct region on a skeletal element that demarcates the attachment area of a muscle or tendon. Often associated with rugosity or tubercles." [PHENOSCAPE] comment: While this term is applicable to both vertebrates and invertebrates, the qualities used to demarcate muscle attachment areas between the two groups may not be identical. +subset: human_subset +subset: mouse_subset synonym: "muscle insertion site" BROAD [] is_a: UBERON:4200047 ! attachment site relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391566,6 +415024,8 @@ id: UBERON:4200107 name: obturator process of ischium def: "Process located on the ventral shaft of the ischium that denotes the attachment site of the pubio-ischio-femoralis externus." [PHENOSCAPE] comment: In birds the pubio-ischio-femoralis externus is sometimes called the M.oburatorius lateralis and medialis. +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391576,6 +415036,8 @@ id: UBERON:4200108 name: outer digit of hand def: "The flanking digit of the manus." [PHENOSCAPE] comment: In most taxa this is digits I and V, but this varies based on the number of digits in the manus +subset: human_subset +subset: mouse_subset is_a: UBERON:0005451 ! segment of manus relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0012140 ! digitopodium region @@ -391585,6 +415047,8 @@ id: UBERON:4200109 name: outer digits of pes def: "The flanking digit of the pes." [PHENOSCAPE] comment: In most taxa this is digits I and V, but this varies based on the number of digits in the pes. +subset: human_subset +subset: mouse_subset is_a: UBERON:0005445 ! segment of pes relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0012140 ! digitopodium region @@ -391593,6 +415057,8 @@ relationship: part_of UBERON:0012140 ! digitopodium region id: UBERON:4200110 name: prepectoral spine def: "Spine located anterior to the pectoral fin." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004529 ! anatomical projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391600,6 +415066,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200111 name: prepelvic fin spine def: "Spine located anterior to the pelvic fin and posterior to the pectoral fin." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004529 ! anatomical projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391607,6 +415075,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200112 name: prepectoral space def: "A triangular, anteroventrally facing area developed between the preaxial margin of the humerus and the proximal limb of the ventral humeral ridge. Based on Callier et al. 2009 ." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391622,6 +415092,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200114 name: prepubic process def: "Elongate process forming the anteriormost part of the pubis." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391631,6 +415103,8 @@ relationship: part_of UBERON:0001275 ! pubis id: UBERON:4200115 name: presupracleithrum def: "An skeletal element of the upper pectoral girdle overlapped by the opercular and posttemporal bones." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391640,6 +415114,8 @@ id: UBERON:4200116 name: pteroid def: "Slender bone connected to the carpus in pterosaurs. The bone, which may have pointed forward, supports the propatagium, a membrane located between the carpus and pectoral region." [PHENOSCAPE] comment: This structure is unique to pterosaurs. There is debate wherther this structure is derived from metacarpal I, the carpal bones or is a a novel bone. See Unwin et al. 1996 +subset: human_subset +subset: mouse_subset is_a: UBERON:0008962 ! forelimb bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391647,6 +415123,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200117 name: pubic boot def: "Anteroposterior expansion of the distal region of the pubis." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391656,6 +415134,8 @@ relationship: part_of UBERON:0001275 ! pubis id: UBERON:4200118 name: pubic peduncle def: "Bony projection on the anterior portion of the ilium, anterior to the acetabulum that articulates with the pubis." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391665,6 +415145,8 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200119 name: pubis-ischium contact def: "Contact zone between the pubis and the ischium." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391674,6 +415156,8 @@ relationship: part_of UBERON:0007830 ! pelvic girdle bone/zone id: UBERON:4200120 name: puboischiadic plate def: "A broad expnase of bone incorperating both the pubis and the ischium. Origin site for ventral limb muscle including the pubioishciofemoralis externus. Modified from Romer 1956 ." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391684,6 +415168,8 @@ id: UBERON:4200121 name: puboischiotibialis muscle alt_id: UBERON:0011914 def: "A muscle that originates from the puboischaidic plate and inserts on the tibia. Acts to adduct the hindlimb. Is anterior to cloacal gland in males. Modified from De luliis and Pulera." [http://orcid.org/0000-0002-6601-2165, PHENOSCAPE:ad] +subset: human_subset +subset: mouse_subset synonym: "M. puboischiotibialis" EXACT [] synonym: "puboischiotibialis" EXACT [PHENOSCAPE:ad] is_a: UBERON:0014794 ! pectoral appendage muscle @@ -391696,6 +415182,8 @@ property_value: taxon_notes "Homologous to mammalian gracilis [ISBN:0073040584]" id: UBERON:4200122 name: pubotibialis def: "Originates in on the pubic cartillage and inserts on the tibia, acts to adduct the hindlimb. Modified from De luliis and Pulera." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001325 ! muscle of pelvis relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: has_muscle_insertion UBERON:0000979 ! tibia @@ -391705,6 +415193,8 @@ relationship: has_muscle_origin UBERON:0001275 ! pubis id: UBERON:4200123 name: scapular process def: "The dorsal extension of the scapulocoracoid above the level of the glenoid region in basal gnathostomes. Modified from Brazeau 2009." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula @@ -391713,6 +415203,8 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:4200124 name: sternal trabecula def: "Anatomical projections that are elongate processes in the mid and posterior regions of the sternum." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000975 ! sternum @@ -391721,6 +415213,8 @@ relationship: part_of UBERON:0000975 ! sternum id: UBERON:4200125 name: supraacetabular crest def: "Anatomical projection (crest) located dorsaly to the acetabulum." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391730,6 +415224,8 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200126 name: supraacetabular rim def: "Bony rim that is part of the supraacetabular region." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391739,6 +415235,8 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200127 name: suprascapula foramen def: "The route through which structures pass between the base of the neck and the posterior scapular region. It is formed by the suprascapular notch of the scapula and the superior transverse scapular ligament. From http://medical-dictionary.thefreedictionary.com/suprascapular+foramen." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005744 ! bone foramen relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula @@ -391748,6 +415246,8 @@ id: UBERON:4200128 name: synarcual region of vertebral column def: "Series of fused cervical vertebrae or vertebral elements. Based on Jeffrey C. Carrier. Biology of Sharks and Their Relatives, 2012. CRC Press." [PHENOSCAPE] comment: 'The synarcual is a structure incorporating the anterior vertebrae of the axial skeleton and occurs in vertebrate taxa such as the fossil group Placodermi and the Chondrichthyes (Holocephali, Batoidea)' DOI:10.1007/s00435-012-0169-9 +subset: human_subset +subset: mouse_subset synonym: "synarcuum" EXACT [] is_a: UBERON:0006077 ! subdivision of vertebral column intersection_of: UBERON:0006077 ! subdivision of vertebral column @@ -391760,6 +415260,8 @@ relationship: subdivision_of UBERON:4200129 ! synarcual region id: UBERON:4200129 name: synarcual region def: "Axial subdivision that includes a series of fused cervical vertebrae or vertebral elements. Based on Jeffrey C. Carrier. Biology of Sharks and Their Relatives, 2012. CRC Press." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011676 ! subdivision of organism along main body axis relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000974 ! neck @@ -391768,6 +415270,8 @@ relationship: part_of UBERON:0000974 ! neck id: UBERON:4200130 name: tibial facet of astragalus def: "Facet for the articulation of the tibia on the astragalus (talus)." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391778,6 +415282,8 @@ id: UBERON:4200131 name: trochanteric shelf def: "Anatomical projection on the anterolateral region of the proximal end of the femur." [PHENOSCAPE] comment: In Archosaurs was originally a possible insertion site for the m. iliofemoralis externus (Hutchinson 2001). In more derived dinosaurs this becomes a distinct process possibly providing the attachment surface for mm. iliotrochanteri in addition to m. iliofemoralis externus (Carrano and Hutchinson 2002) +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391795,6 +415301,8 @@ replaced_by: UBERON:0005813 id: UBERON:4200133 name: crest def: "A ridge or similar projection rising above the surface of an anatomical structure." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004529 ! anatomical projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391802,6 +415310,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200134 name: antimere def: "A part in the body of an organism that corresponds to an opposite symmetrical part." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000475 ! organism subdivision relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391810,6 +415320,8 @@ id: UBERON:4200135 name: puboischiadic bar def: "A transverse flattened or cylindrical plate in the posterior body wall opposite the anterior ends of the pelvic fins, in front of the vent and at the posterior end of the body cavity, that supports a few anterior pelvic radials and a basal cartilage, the basipterygium. from Leonard J. V. Compagno. 2001. Sharks of the World: An Annotated and Illustrated Catalogue of Shark Species Known to Date. Volume 2." [PHENOSCAPE] comment: Potentially homologous to the pelvic girdle. +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element @@ -391837,6 +415349,8 @@ relationship: part_of UBERON:0003108 ! suspensorium id: UBERON:4200140 name: prepollical element def: "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prepollex which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the hand." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015049 ! carpus endochondral element relationship: part_of UBERON:0012135 ! prepollex skeleton @@ -391844,6 +415358,8 @@ relationship: part_of UBERON:0012135 ! prepollex skeleton id: UBERON:4200141 name: prehallical element def: "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prehallux which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the foot." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0015050 ! tarsus endochondral element relationship: dc-contributor https://orcid.org/0000-0002-1810-9886 relationship: part_of UBERON:3000922 ! prehallux skeleton @@ -391852,6 +415368,8 @@ relationship: part_of UBERON:3000922 ! prehallux skeleton id: UBERON:4200150 name: accessory foramen def: "Foramen found on the humerus of tetrapodomorphs beyond the entepicondyle and ectepicondyle foramen. Often denoted as foramen 'c' and 'd' after Jarvik 1996." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -391860,6 +415378,8 @@ relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200151 name: toe disc +subset: human_subset +subset: mouse_subset is_a: UBERON:3000981 ! limb external integument structure relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0002544 ! digit @@ -391868,6 +415388,8 @@ relationship: part_of UBERON:0002544 ! digit id: UBERON:4200152 name: intertarsale sesamoid def: "Sesamoid bone in the tarsal region." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "os sesamoides tarsale" BROAD [] is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0008000 ! sesamoid bone of pes @@ -391878,6 +415400,8 @@ relationship: part_of UBERON:0004454 ! tarsal region [Term] id: UBERON:4200153 name: metatarsal bone of digit 6 +subset: human_subset +subset: mouse_subset is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:4200154 ! metapodium bone 6 intersection_of: UBERON:4200154 ! metapodium bone 6 @@ -391887,6 +415411,8 @@ relationship: part_of UBERON:0000983 ! metatarsus region [Term] id: UBERON:4200154 name: metapodium bone 6 +subset: human_subset +subset: mouse_subset is_a: UBERON:0003821 ! metapodium bone intersection_of: UBERON:0003821 ! metapodium bone intersection_of: part_of UBERON:0016866 ! digit 6 plus metapodial segment @@ -391895,6 +415421,8 @@ relationship: part_of UBERON:0016866 ! digit 6 plus metapodial segment [Term] id: UBERON:4200155 name: metapodium bone 7 +subset: human_subset +subset: mouse_subset is_a: UBERON:0003821 ! metapodium bone intersection_of: UBERON:0003821 ! metapodium bone intersection_of: part_of UBERON:0016867 ! digit 7 plus metapodial segment @@ -391903,6 +415431,8 @@ relationship: part_of UBERON:0016867 ! digit 7 plus metapodial segment [Term] id: UBERON:4200156 name: metapodium bone 8 +subset: human_subset +subset: mouse_subset is_a: UBERON:0003821 ! metapodium bone intersection_of: UBERON:0003821 ! metapodium bone intersection_of: part_of UBERON:0016868 ! digit 8 plus metapodial segment @@ -391911,6 +415441,8 @@ relationship: part_of UBERON:0016868 ! digit 8 plus metapodial segment [Term] id: UBERON:4200157 name: metatarsal bone of digit 7 +subset: human_subset +subset: mouse_subset is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:4200155 ! metapodium bone 7 intersection_of: UBERON:4200155 ! metapodium bone 7 @@ -391920,6 +415452,8 @@ relationship: part_of UBERON:0000983 ! metatarsus region [Term] id: UBERON:4200158 name: metatarsal bone of digit 8 +subset: human_subset +subset: mouse_subset is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:4200156 ! metapodium bone 8 intersection_of: UBERON:4200156 ! metapodium bone 8 @@ -391930,6 +415464,8 @@ relationship: part_of UBERON:0000983 ! metatarsus region id: UBERON:4200159 name: ventral ridge system def: "A collection of attached ridges on the ventrl surface of the femur consisting of the internal and fourth trochanters plus the adductor blade and crest. Most notible in early amniotes (based on Romer 1956)." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0000981 ! femur @@ -391962,6 +415498,8 @@ relationship: part_of UBERON:0002534 ! paired fin id: UBERON:4200166 name: hindlimb interepipodial space def: "The space between the bones of the tibia and the fibula." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: adjacent_to UBERON:0000979 ! tibia relationship: adjacent_to UBERON:0001446 ! fibula @@ -391970,6 +415508,8 @@ relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton [Term] id: UBERON:4200167 name: mesial pelvic ridge +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0002355 ! pelvic region of trunk @@ -391984,6 +415524,8 @@ is_obsolete: true id: UBERON:4200169 name: process 2 of entepicondyle def: "Process on the humerus of basal tetrapods, anterior to the entepicondyle and associated with subscapularis muscle (based on Coates 1996)." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "process 2" BROAD [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -391994,6 +415536,8 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/1819" xsd id: UBERON:4200170 name: process 3 of entepicondyle def: "Process on the humerus of basal tetrapods, anterior to the entepicondyle and adjacent to process 4 of entepicondyle (see Coates 1996)." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -392002,6 +415546,8 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200171 name: process 4 of entepicondyle def: "Process on the humerus of basal tetrapods, anterior to the entepicondyle and adjacent to process 3 of entepicondyle (see Coates 1996)." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -392009,6 +415555,8 @@ relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200172 name: neck of humerus +subset: human_subset +subset: mouse_subset synonym: "anatomic neck of humerus" RELATED [FMA:23356] synonym: "collum anatomicum (Humerus)" EXACT [FMA:23356] synonym: "collum anatomicum humeri" EXACT OMO:0003011 [FMA:23356, FMA:TA] @@ -392026,6 +415574,8 @@ relationship: part_of UBERON:0004411 ! proximal epiphysis of humerus [Term] id: UBERON:4200173 name: dorsal ridge +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -392034,6 +415584,8 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200174 name: distal condyle of humerus def: "The area encompassing the radial and ulnar condyles of the humerus." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0009988 ! condyle of humerus relationship: has_part UBERON:0010853 ! capitulum of humerus relationship: has_part UBERON:3000784 ! ulnar condyle @@ -392041,6 +415593,8 @@ relationship: has_part UBERON:3000784 ! ulnar condyle [Term] id: UBERON:4200175 name: supraglenoid region +subset: human_subset +subset: mouse_subset is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006849 ! scapula @@ -392048,12 +415602,16 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:4200176 name: ascending process of clavicle def: "A bony dorsal extension of the clavicle." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0001105 ! clavicle bone [Term] id: UBERON:4200177 name: supracondyle tubercle +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection @@ -392076,12 +415634,16 @@ replaced_by: UBERON:0009565 id: UBERON:4200180 name: semilunate carpal def: "The moon shaped fusion of distal carpals 1 and 2 found in some theropod dinosaurs, permitting greater wrist mobility." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001435 ! carpal bone [Term] id: UBERON:4200181 name: astragalus head def: "The region of the astragalus/ talus that carries the articular surface for the navicular or central metatarsal." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "talus head" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ @@ -392090,6 +415652,8 @@ relationship: part_of UBERON:0002395 ! talus [Term] id: UBERON:4200182 name: lateral tubercle of astragalus +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection @@ -392099,6 +415663,8 @@ relationship: part_of UBERON:0002395 ! talus id: UBERON:4200183 name: bicipital tuberosity def: "The rough eminence which is on the anterior inner aspect of the neck of the radius and into which the tendon of the biceps is inserted. From http://www.merriam-webster.com/medical." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection @@ -392108,6 +415674,8 @@ relationship: part_of UBERON:0001423 ! radius bone id: UBERON:4200184 name: ulnar tuberosity def: "His roughened area of bone sits distomedially at the base of the coronoid process. It is the attachment site for the brachialis muscle. From http://www.anatomyexpert.com/." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection @@ -392117,6 +415685,8 @@ relationship: part_of UBERON:0001424 ! ulna id: UBERON:4200185 name: entepicondyle fossa def: "A fossa on the distal humerus proximal to the entepicondyle." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004704 ! bone fossa relationship: adjacent_to UBERON:0006806 ! entepicondyle of humerus relationship: part_of UBERON:0000976 ! humerus @@ -392124,6 +415694,8 @@ relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200186 name: distal keel of metacarpal III +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0003647 ! metacarpal bone of digit 3 @@ -392139,6 +415711,8 @@ is_obsolete: true [Term] id: UBERON:4200188 name: manual toe disc +subset: human_subset +subset: mouse_subset is_a: UBERON:4200151 ! toe disc intersection_of: UBERON:4200151 ! toe disc intersection_of: part_of UBERON:0002389 ! manual digit @@ -392147,6 +415721,8 @@ relationship: part_of UBERON:0002389 ! manual digit [Term] id: UBERON:4200189 name: pedal toe disc +subset: human_subset +subset: mouse_subset is_a: UBERON:4200151 ! toe disc intersection_of: UBERON:4200151 ! toe disc intersection_of: part_of UBERON:0001466 ! pedal digit @@ -392157,6 +415733,8 @@ id: UBERON:4200190 name: zygosphene def: "An articular process on anterior surface of neural arch of vertebrae which fits into zygantrum. Modified from Henderson's dictionary of Biological terms 12th Edition." [PHENOSCAPE] comment: Found in snakes and some lizards. +subset: human_subset +subset: mouse_subset is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0003861 ! neural arch @@ -392169,6 +415747,8 @@ is_obsolete: true [Term] id: UBERON:4200192 name: ulnar facet of the humerus +subset: human_subset +subset: mouse_subset synonym: "ulnar facet" BROAD [] is_a: UBERON:4200214 ! epipodial facet is_a: UBERON:4200230 ! surface of bone @@ -392179,6 +415759,8 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200193 name: posterodorsal process of ilium def: "Anatomical project part of the blade of the ilium that projects posteriorly." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -392189,6 +415771,8 @@ id: UBERON:4200194 name: intercentrum def: "The anteriormost of the two possible elements found in the tetrapod centrum (when the centrum is not a single element)." [PHENOSCAPE] comment: If there is only one element that makes part of the centrum it can be either the intercentrum (some amphibians) or the pleurocentrum (amniotes) (see Hildebrand and Goslow 's Analysis of Vertebrate structure) +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum [Term] @@ -392196,12 +415780,16 @@ id: UBERON:4200195 name: pleurocentrum def: "The posteriormost of the two possible elements found in the tetrapod centrum (when the centrum is not a single element)." [PHENOSCAPE] comment: If there is only one element that makes part of the centrum it can be either the intercentrum (some amphibians) or the pleurocentrum (amniotes) (see Hildebrand and Goslow 's Analysis of Vertebrate structure) +subset: human_subset +subset: mouse_subset is_a: UBERON:0001075 ! bony vertebral centrum [Term] id: UBERON:4200196 name: atlas intercentrum def: "The intercentrum unit of the atlas vertebra." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4200194 ! intercentrum relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -392209,6 +415797,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200197 name: anterior humeral ridge def: "Ridge or keel at the proximal end of the humerus. (see Laurin 1998)." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -392218,6 +415808,8 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200198 name: incisor process def: "Process that is part of the mandible that is in close proximity to the incisor teeth." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -392227,6 +415819,8 @@ relationship: part_of UBERON:0001684 ! mandible id: UBERON:4200199 name: sallet sensory system def: "Ciliary restraint system in the inner ear that uses sallets instead of the tectorial membrane." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "sallet restraint system" EXACT [] is_a: UBERON:0011216 ! organ system subdivision relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -392236,6 +415830,8 @@ relationship: part_of UBERON:0002105 ! vestibulo-auditory system id: UBERON:4200203 name: humeral facet on the ulna def: "Facet on the ulna for articulation with the ulnar condyle of the humerus." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet relationship: part_of UBERON:0001424 ! ulna @@ -392244,6 +415840,8 @@ relationship: part_of UBERON:0001424 ! ulna id: UBERON:4200204 name: humeral facet on radius def: "Facet on the radius for articulation with the radial condyle of the humerus." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "proximal articular surface of radius" EXACT [] is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet @@ -392276,6 +415874,8 @@ is_a: UBERON:2101586 ! pectoral fin radial element id: UBERON:4200209 name: postaxial process of the ulnare def: "A projection on the postaxial region of the ulnare." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002445 ! ulnare @@ -392284,6 +415884,8 @@ relationship: part_of UBERON:0002445 ! ulnare id: UBERON:4200210 name: postaxial process of the femur def: "A projection on the postaxial region of the femur." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000981 ! femur @@ -392292,6 +415894,8 @@ relationship: part_of UBERON:0000981 ! femur id: UBERON:4200211 name: postaxial process of the fibula def: "A projection on the postaxial region of the fibula." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001446 ! fibula @@ -392299,6 +415903,8 @@ relationship: part_of UBERON:0001446 ! fibula [Term] id: UBERON:4200212 name: pectoral process of humerus +subset: human_subset +subset: mouse_subset synonym: "pectoral process" RELATED [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle @@ -392308,6 +415914,8 @@ relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200213 name: deltoid process +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection @@ -392317,6 +415925,8 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200214 name: epipodial facet def: "Facets for the articulation of the epipodial (zeugopodial) elements." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4300038 ! facet relationship: part_of UBERON:0011583 ! stylopodial skeleton @@ -392324,6 +415934,8 @@ relationship: part_of UBERON:0011583 ! stylopodial skeleton id: UBERON:4200215 name: suture def: "Line of junction between two parts immovably connected. Modified from Henderson's Dictionary of Biological Terms." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset xref: MESH:D013537 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002209 ! fibrous joint @@ -392331,6 +415943,8 @@ is_a: UBERON:0002209 ! fibrous joint id: UBERON:4200216 name: fibula facet of femur def: "Facet on the femur for the fibula." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "fibular fossa" BROAD [] is_a: UBERON:4200214 ! epipodial facet is_a: UBERON:4200230 ! surface of bone @@ -392340,6 +415954,8 @@ relationship: part_of UBERON:0000981 ! femur id: UBERON:4200217 name: tibial facet of femur def: "Facet on the femur for the tibia." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4200214 ! epipodial facet is_a: UBERON:4200230 ! surface of bone relationship: part_of UBERON:0000981 ! femur @@ -392348,11 +415964,15 @@ relationship: part_of UBERON:0000981 ! femur id: UBERON:4200218 name: musculotendinous bundle def: "A collection of muscle and tendinous tissue." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001134 ! skeletal muscle tissue [Term] id: UBERON:4200219 name: middle phalanx of manual digit 1 +subset: human_subset +subset: mouse_subset is_a: UBERON:0003620 ! manual digit 1 phalanx is_a: UBERON:0003864 ! middle phalanx of manus relationship: part_of UBERON:0001463 ! manual digit 1 @@ -392360,18 +415980,24 @@ relationship: part_of UBERON:0001463 ! manual digit 1 [Term] id: UBERON:4200220 name: iliac ramus +subset: human_subset +subset: mouse_subset is_a: UBERON:0001273 ! ilium [Term] id: UBERON:4200221 name: growth line def: "Distinct layer that indicate the growth of an organism." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006800 ! anatomical line [Term] id: UBERON:4200222 name: distal groove of humerus def: "Groove along the distal margin of the humerus, ventral to the radial and ulnar condyle." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0000976 ! humerus @@ -392379,6 +416005,8 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200223 name: foramen C def: "Foramen located on the scapulocoracoid, located just behind the cleithral anteroventral process(the articulation with the cleithrum). Modified from Coates 1996." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0004753 ! scapulocoracoid @@ -392386,6 +416014,8 @@ relationship: part_of UBERON:0004753 ! scapulocoracoid id: UBERON:4200224 name: columnar area def: "Modified from Garvey et al. 2005. ' Between the dorsal ridge and the caput humeri is a futher recessed area......that clearly separates the two structures and is slightly separted from the dorsal surface of the entepicondyle, and more specifically from the unfinished bone of the entepicondyle, by a narrow ridge.'." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0000976 ! humerus @@ -392394,6 +416024,8 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200225 name: scapulohumeralis muscle def: "Muscle found primarily in basal sarcopterygians that runs between teh scapulocoracoid and the humerus. Its exact homologies with more derived shoulder muscles in Tetrapoda is unclear." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001482 ! muscle of shoulder relationship: has_muscle_insertion UBERON:0000976 ! humerus relationship: has_muscle_origin UBERON:0004753 ! scapulocoracoid @@ -392414,6 +416046,8 @@ is_obsolete: true [Term] id: UBERON:4200228 name: excurrent foramen of ectepicondylar foramen +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:4200060 ! ectepicondylar foramen @@ -392421,6 +416055,8 @@ relationship: part_of UBERON:4200060 ! ectepicondylar foramen [Term] id: UBERON:4200229 name: incurrent foramen of ectepicondylar foramen +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:4200060 ! ectepicondylar foramen @@ -392429,6 +416065,8 @@ relationship: part_of UBERON:4200060 ! ectepicondylar foramen id: UBERON:4200230 name: surface of bone def: "An anatomical surface that is part of a bone." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "bone surface" EXACT [] is_a: UBERON:0006984 ! anatomical surface intersection_of: UBERON:0006984 ! anatomical surface @@ -392439,18 +416077,24 @@ relationship: part_of UBERON:0001474 ! bone element id: UBERON:4200231 name: unfinished bone surface def: "A bone surface that is not smooth and periosteal. The usual implication is that the bone was still growing, was covered in cartilage, or both. From Paleos.com." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4200230 ! surface of bone [Term] id: UBERON:4200232 name: finished bone surface def: "A smooth periosteal bone surface." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4200230 ! surface of bone [Term] id: UBERON:4200233 name: dorsal clavicular process def: "A process, extending dorsally from the clavicular plate, that attaches to the cleithrum. Modified from Clack 2012 and Coates 1996." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "ascending dorsal clavicular process" EXACT [] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001105 ! clavicle bone @@ -392458,79 +416102,109 @@ relationship: part_of UBERON:0001105 ! clavicle bone [Term] id: UBERON:4200234 name: precoronoid bone +subset: human_subset +subset: mouse_subset is_a: UBERON:0011598 ! coronoid bone [Term] id: UBERON:4200235 name: postcoronoid bone +subset: human_subset +subset: mouse_subset is_a: UBERON:0011598 ! coronoid bone [Term] id: UBERON:4200236 name: anterior coronoid bone +subset: human_subset +subset: mouse_subset is_a: UBERON:0011598 ! coronoid bone [Term] id: UBERON:4200237 name: posterior coronoid bone +subset: human_subset +subset: mouse_subset is_a: UBERON:0011598 ! coronoid bone [Term] id: UBERON:4200238 name: coronoid fang +subset: human_subset +subset: mouse_subset is_a: UBERON:0011603 ! coronoid tooth [Term] id: UBERON:4200239 name: shagreen tooth field +subset: human_subset +subset: mouse_subset is_a: UBERON:0009678 ! tooth row [Term] id: UBERON:4200240 name: fronto-ethmoidal shield +subset: human_subset +subset: mouse_subset is_a: UBERON:0003113 ! dermatocranium [Term] id: UBERON:4200241 name: postrostral bone +subset: human_subset +subset: mouse_subset is_a: UBERON:4200240 ! fronto-ethmoidal shield [Term] id: UBERON:4200242 name: median postrostral bone +subset: human_subset +subset: mouse_subset is_a: UBERON:4200241 ! postrostral bone [Term] id: UBERON:4200243 name: surangular pit line def: "...a v-shaped pair of ridges, each carrying three or four smallpores Modified from Ahlberg et al. 2005." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011636 ! surangular bone [Term] id: UBERON:4200244 name: anterior supraorbital bone +subset: human_subset +subset: mouse_subset is_a: UBERON:2000691 ! supraorbital bone [Term] id: UBERON:4200245 name: parasymphysial plate def: "Bone, often with tooth attachments, on the lingual side of the anterior of the lower jaw." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004768 ! bone of lower jaw [Term] id: UBERON:4200246 name: mesial parasymphysial foramen +subset: human_subset +subset: mouse_subset is_a: UBERON:4200245 ! parasymphysial plate [Term] id: UBERON:4200247 name: lateral parasymphysial foramen +subset: human_subset +subset: mouse_subset is_a: UBERON:4200245 ! parasymphysial plate [Term] id: UBERON:4200248 name: hypophysial region comment: Region of the endocranium that encompasses the connection between the hypothalamus and the anterior pituitary. +subset: human_subset +subset: mouse_subset synonym: "hypophyseal region" EXACT [] is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002241 ! chondrocranium @@ -392539,12 +416213,16 @@ relationship: part_of UBERON:0002241 ! chondrocranium id: UBERON:4200250 name: meckelian bone def: "The ossification of the Meckel's cartilage." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001708 ! jaw skeleton relationship: develops_from UBERON:0003107 ! Meckel's cartilage [Term] id: UBERON:4200251 name: meckelian foramen +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:4200250 ! meckelian bone @@ -392560,6 +416238,8 @@ replaced_by: UBERON:3000652 id: UBERON:4300002 name: palatine prong def: "A process on the palatine that projects outward and upward and articulates with a depression (maxillary saddle) in the proximal end of the maxilla [Gosline WA et al, 1966; Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.]." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004530 ! bony projection is_a: UBERON:0010313 ! neural crest-derived structure relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -392587,6 +416267,8 @@ relationship: has_part UBERON:0002542 ! scale id: UBERON:4300005 name: aphakic space def: "The space in the pupil, which is not occupied by the lens. A rostral aphakic space may enhance the forward binocular field of vision." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset xref: http://www.briancoad.com/Dictionary/Introduction%20and%20A-F.htm is_a: UBERON:0000464 ! anatomical space relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -392604,6 +416286,8 @@ relationship: has_part UBERON:0002542 ! scale id: UBERON:4300007 name: medial pelvic process def: "Process that is posteriorly oriented and medially located on the basipterygium. It is a paired projection. [PHENOSCAPE:bf]." [http://hdl.handle.net/10088/11710] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -392613,6 +416297,8 @@ relationship: part_of UBERON:2000623 ! basipterygium bone id: UBERON:4300008 name: epipleural series def: "Anatomical cluster that consists of the epipleurals." [PHENOSCAPE:bf] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:2000350 ! epipleural @@ -392624,6 +416310,8 @@ id: UBERON:4300012 name: clavus def: "A rudder-like lobe formed from extensions of dorsal and anal fin rays." [PHENOSCAPE] comment: Found in ocean sunfishes (Molidae) which lack a caudal fin. TODO: consider relationship to fin. +subset: human_subset +subset: mouse_subset synonym: "pseudo-caudal fin" EXACT [] synonym: "pseudocaudal fin" EXACT [] is_a: UBERON:0000026 ! appendage @@ -392644,6 +416332,8 @@ relationship: part_of UBERON:0010713 ! paired fin skeleton id: UBERON:4300014 name: dorsal cleithrum comment: According to Forey 1988, History of the Coelacanth fish:\n\n'In placoderms there are large overlapping plates which completely encircle the body and superficially may be matched with those in osteichthyans (Stensio, 1959; Forey, 1980; Jarvik, 1980). Thus, the anterior median ventral, anteroventral and anterior lateral of placoderms lie in the same positions as the interclavicle, clavicle (ventral cleithrum) and cleithrum (dorsal cleithrum) of osteichthyans.' +subset: human_subset +subset: mouse_subset is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -392653,6 +416343,8 @@ relationship: part_of UBERON:0007831 ! pectoral girdle skeleton id: UBERON:4300015 name: ventral cleithrum comment: According to Forey 1988, History of the Coelacanth fish:\n\n'In placoderms there are large overlapping plates which completely encircle the body and superficially may be matched with those in osteichthyans (Stensio, 1959; Forey, 1980; Jarvik, 1980). Thus, the anterior median ventral, anteroventral and anterior lateral of placoderms lie in the same positions as the interclavicle, clavicle (ventral cleithrum) and cleithrum (dorsal cleithrum) of osteichthyans.' +subset: human_subset +subset: mouse_subset is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -392671,6 +416363,8 @@ relationship: part_of UBERON:0000152 ! pelvic fin id: UBERON:4300017 name: rostrodermethmoid def: "Dermal bone formed by the fusion of dermethmoids and rostral bones [Fink, W L Weitzman, S H. 1982. Relationships of the stomiiform fishes (Teleostei), with a description of Diplophos Bulletin of The Museum of Comparative Zoology 150:31-93. http://www.biodiversitylibrary.org/part/28697]." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011164 ! neurocranium bone is_a: UBERON:0011597 ! bone of upper jaw @@ -392713,6 +416407,8 @@ relationship: part_of UBERON:4000166 ! anal fin skeleton id: UBERON:4300021 name: anterolateral plate def: "Dermal bone that is part of the scapular complex in placoderm fishes." [ISBN:3-89937-052-X] +subset: human_subset +subset: mouse_subset synonym: "AL" EXACT [ISBN:3-89937-052-X] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone @@ -392723,6 +416419,8 @@ relationship: part_of UBERON:4000171 ! scapular complex id: UBERON:4300022 name: anteroventral plate def: "Dermal bone that is part of the scapular complex in placoderms, located in the ventral armour adjacent to the interolateral (IL) and anterior ventrolateral (AVL) plates." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "anterior ventral plate" EXACT [] synonym: "AV" EXACT [] is_a: UBERON:0007829 ! pectoral girdle bone @@ -392734,6 +416432,8 @@ relationship: part_of UBERON:4000171 ! scapular complex id: UBERON:4300023 name: interolateral plate def: "Dermal bone that is part of the scapular complex in placoderms, and located anterior to the anterior ventrolateral (AVL) plate." [ISBN:3-89937-052-X] +subset: human_subset +subset: mouse_subset synonym: "IL" EXACT [ISBN:3-89937-052-X] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone @@ -392744,6 +416444,8 @@ relationship: part_of UBERON:4000171 ! scapular complex id: UBERON:4300024 name: spinal plate def: "Dermal bone that is part of the scapular complex in placoderms, and located lateral to the anterior ventrolateral (AVL) plate." [ISBN:3-89937-052-X] +subset: human_subset +subset: mouse_subset synonym: "Sp" EXACT [ISBN:3-89937-052-X] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone @@ -392754,6 +416456,8 @@ relationship: part_of UBERON:4000171 ! scapular complex id: UBERON:4300025 name: posterior dorsolateral plate def: "Dermal bone that is part of the scapular complex in placoderms, located posterior to the main components of the complex." [ISBN:3-89937-052-X] +subset: human_subset +subset: mouse_subset synonym: "PDL" EXACT [ISBN:3-89937-052-X] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone @@ -392764,6 +416468,8 @@ relationship: part_of UBERON:4000171 ! scapular complex id: UBERON:4300026 name: anterior ventrolateral plate def: "Dermal bone that is part of the ventral region of scapular complex in placoderms (see also posterior ventrolateral plate). In most placoderms with a long ventral armour, the ventral wall is typically composed of two large paired lateral plates (anterior and posterior ventrolaterals)." [ISBN:3-89937-052-X] +subset: human_subset +subset: mouse_subset synonym: "AVL" EXACT [ISBN:3-89937-052-X] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone @@ -392774,6 +416480,8 @@ relationship: part_of UBERON:4000171 ! scapular complex id: UBERON:4300028 name: posterior ventrolateral plate def: "Dermal bone that is part of the ventral region of scapular complex in placoderms (see also anterior ventrolateral plate). In most placoderms with a long ventral armour, the ventral wall is typically composed of two large paired lateral plates (anterior and posterior ventrolaterals)." [ISBN:3-89937-052-X] +subset: human_subset +subset: mouse_subset synonym: "PVL" EXACT [ISBN:3-89937-052-X] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone @@ -392785,6 +416493,8 @@ id: UBERON:4300029 name: dermal neck joint def: "Dermal articulation between skull and shoulder girdle localized to paired dermal neck-joint between anterior dorsolateral plate (ADL) and paranuchal (PNu) plates in placoderms." [DOI:10.1146/annurev-earth-040809-152507] comment: TODO: add ADL and PNu classes and relationships +subset: human_subset +subset: mouse_subset synonym: "cervical neck joint" EXACT [] is_a: UBERON:0000982 ! skeletal joint relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -392793,6 +416503,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300030 name: flexor caudalis muscle comment: TODO: needs definition. +subset: human_subset +subset: mouse_subset is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -392829,6 +416541,8 @@ relationship: part_of UBERON:4200023 ! anterior dorsal fin id: UBERON:4300034 name: antorbital cartilage def: "Cartilage element on the neurocranium of sawsharks and batoids, separate cartilages attached to the sides of the nasal capsules that support the sides or front of the head. [Compagno, L.J.V. Sharks of the world. An annotated and illustrated catalogue of shark species known to date. Volume 2. Bullhead, mackerel and carpet sharks (Heterodontiformes, Lamniformes and Orectolobiformes). FAO Species Catalogue for Fishery Purposes. No. 1, Vol. 2. Rome, FAO. 2001. 269p. ISBN 92-5-104543-7]." [ISBN:92-5-104543-7] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003932 ! cartilage element of chondrocranium relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001703 ! neurocranium @@ -392837,6 +416551,8 @@ relationship: part_of UBERON:0001703 ! neurocranium id: UBERON:4300035 name: supraneural element def: "Endochondral element that is median and located in the dorsal skeletogenous septum between the cranium and the dorsal fin." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010363 ! endochondral element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0002090 ! postcranial axial skeleton @@ -392844,6 +416560,8 @@ relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] id: UBERON:4300036 name: supraneural cartilage +subset: human_subset +subset: mouse_subset is_a: UBERON:2001457 ! postcranial axial cartilage is_a: UBERON:4300035 ! supraneural element intersection_of: UBERON:4300035 ! supraneural element @@ -392863,6 +416581,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300038 name: facet def: "A small smooth area on a bone or other firm structure. A worn spot on a tooth, produced by chewing or grinding." [http://medical-dictionary.thefreedictionary.com/facet] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006984 ! anatomical surface relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0004765 ! skeletal element @@ -392920,6 +416640,8 @@ id: UBERON:4300090 name: X bone def: "The x bone is a detached neural spine anterior to the neural spine of preural centrum 2." [PHENOSCAPE] comment: In fishes, accessory bones (e.g., X bone) are common in Gadiformes and rare in Zeiformes (Borden et al., 2013). +subset: human_subset +subset: mouse_subset is_a: UBERON:0001076 ! neural spine relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -392928,12 +416650,16 @@ id: UBERON:4300091 name: Y bone def: "The y bone is a detached neural spine anterior to the haemal spines of preural centrum 2." [PHENOSCAPE] comment: Comment: In fishes, accessory bones (e.g., Y bone) are common in Gadiformes and rare in Zeiformes (Borden et al., 2013). +subset: human_subset +subset: mouse_subset is_a: UBERON:0001076 ! neural spine relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300092 name: mesocoracoid element +subset: human_subset +subset: mouse_subset is_a: UBERON:0010363 ! endochondral element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0007831 ! pectoral girdle skeleton @@ -392987,6 +416713,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300104 name: ectocoracoid bone def: "A paired dermal bone in Gasterosteiformes connected with the coracoid and extending posteriorly. Has also been applied to the element below the scapula and applied to the coracoid in Dipnoi. Dictionary of Ichthyology." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -392996,6 +416724,8 @@ relationship: part_of UBERON:0007831 ! pectoral girdle skeleton id: UBERON:4300105 name: caudal vertebra 1 def: "Caudal vertebra that is the anteriormost element of the series." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001095 ! caudal vertebra relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393003,6 +416733,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300106 name: ventral limb of posttemporal def: "Zone of bone organ that is the ventral extension of the posttemporal." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393029,6 +416761,8 @@ relationship: part_of UBERON:4000174 ! caudal fin lepidotrichium [Term] id: UBERON:4300110 name: lateral ethmoid cartilage +subset: human_subset +subset: mouse_subset is_a: UBERON:0007844 ! cartilage element is_a: UBERON:4300111 ! lateral ethmoid element relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue @@ -393038,6 +416772,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300111 name: lateral ethmoid element def: "Endochondral element that separates the olfactory region from the orbit, extends medially to meet its fellow medially below the frontal bones and is bordered by the mesethmoid anteriorly. It may articulate with the autopalatine and infraorbital 1 laterally. The lateral ethmoid is paired." [ZFIN:curator] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010363 ! endochondral element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393090,6 +416826,8 @@ relationship: part_of UBERON:0000152 ! pelvic fin id: UBERON:4300119 name: glenoid region def: "Region surrounding the glenoid fossa on the scapulocoracoid." [PHENOSCAPE:AD] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0004753 ! scapulocoracoid @@ -393106,6 +416844,8 @@ relationship: part_of UBERON:0003097 ! dorsal fin id: UBERON:4300121 name: zygantrum def: "A fossa on the posterior median part of the neural arch of a vertebra (as of a snake) that accommodates the zygosphene of the next vertebra." [PHENOSCAPE:JL] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004704 ! bone fossa is_a: UBERON:0010276 ! space in vertebral column relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393122,6 +416862,8 @@ replaced_by: UBERON:0001080 id: UBERON:4300123 name: pre-axial region def: "Anatomical region lying to the anterior or dorsal side of the metapterygial axis." [PHENOSCAPE:AD] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010538 ! paired limb/fin segment relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0004710 ! pectoral appendage @@ -393130,6 +416872,8 @@ relationship: part_of UBERON:0004710 ! pectoral appendage id: UBERON:4300124 name: axis intercentrum def: "The intercentrum unit of the axis vertebra. ." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4200194 ! intercentrum relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393137,6 +416881,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300125 name: dorsal iliac ridge def: "Ridge that is part of the ilium." [PHENOSCAPE:AD, WD] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393146,6 +416892,8 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4300126 name: tectorial restraint system def: "Tectorial restraint system is a type of ciliary restraint system for hair cells in the inner ear. In tectorial restraint systems, the tectorial membrane restrains the cilia of the hair cells by attaching either directly to ciliary tufts or indirectly through various kinds of fibrous structure (simple fibers, fibrous strands, finger-like processes, tectorial plates) [Phylogenetic Relationships of the Lizard Families: Essays Commemorating Charles L. Camp. 1988. Eds. R Estes, GK Pregill. Stanford University Press]." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000467 ! anatomical system is_a: UBERON:0004121 ! ectoderm-derived structure relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393155,6 +416903,8 @@ relationship: part_of UBERON:0001846 ! internal ear id: UBERON:4300127 name: nuchal crest def: "Bony protuberance on the external surface of the occipital bone.[PHENOSCAPE:AD]." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004530 ! bony projection relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0005902 ! occipital region @@ -393163,6 +416913,8 @@ relationship: part_of UBERON:0005902 ! occipital region id: UBERON:4300128 name: sacral rib def: "Elements of the sacrum joining true sacral vertebrae to pelvis [12th edition of Henderson's Dictionary of Biological terms]." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002228 ! rib is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0005179 ! pelvic region element @@ -393173,6 +416925,8 @@ relationship: part_of UBERON:0005473 ! sacral region id: UBERON:4300129 name: dorsal pelvic gland def: "Cloacal glands that secrete into the dorsal roof of the cloacal tube and or the anterior cloacal chamber. Found in male salamanders." [http://www.jstor.org/stable/1466953] +subset: human_subset +subset: mouse_subset is_a: UBERON:0012478 ! cloacal gland relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393180,6 +416934,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300130 name: lateral pelvic gland comment: Cloacal gland present in males that secrete into the dorsolateral walls of the cloaca (between dorsal pelvic gland and anterior ventral pelvic gland clusters). Found in salamanders. {xref="http://www.jstor.org/stable/1466953"} +subset: human_subset +subset: mouse_subset is_a: UBERON:0012478 ! cloacal gland relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393187,6 +416943,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300132 name: glossopharyngeal nerve foramen def: "Foramen for the passage of the glossopharyngeal nerve IX." [PHENOSCAPE:WD] +subset: human_subset +subset: mouse_subset synonym: "nerve foramen IX" EXACT [] is_a: UBERON:3000051 ! braincase and otic capsule opening relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393195,6 +416953,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300133 name: upper jaw symphyseal region def: "The region of the upper jaw on or near the midline." [PHENOSCAPE:WD] +subset: human_subset +subset: mouse_subset synonym: "upper jaw symphysial region" EXACT [] is_a: UBERON:0001709 ! upper jaw region relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393203,6 +416963,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300134 name: lateral commissure def: "Region of the braincase which bears the facets for the hyomandibula in fishes. This region disappears in the origin of tetrapods and the space it occipied comes to contribute to the fenestra vestibulii. Clack, JA, 2001. Ch. 23, The otoccipital region. In Major Events in Early Vertebrate Evolution. Per Ahlberg editor." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000075 ! subdivision of skeletal system relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0003128 ! cranium @@ -393211,6 +416973,8 @@ relationship: part_of UBERON:0003128 ! cranium id: UBERON:4300135 name: upper jaw symphyseal tooth def: "Tooth of the upper jaw that is adjacent to the upper jaw symphysis." [PHENOSCAPE:WD] +subset: human_subset +subset: mouse_subset synonym: "upper jaw symphysial tooth" EXACT [] is_a: UBERON:0001091 ! calcareous tooth relationship: attaches_to UBERON:0011597 ! bone of upper jaw @@ -393221,6 +416985,8 @@ relationship: part_of RO:0002577 ! system id: UBERON:4300137 name: lingual region def: "The region of an anatomical structure (such as a tooth or jaw bone) facing the tongue." [PHENOSCAPE:WD] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0000165 ! mouth @@ -393229,6 +416995,8 @@ relationship: part_of UBERON:0000165 ! mouth id: UBERON:4300138 name: labial region def: "The region of an anatomical structure, such as a tooth or jaw bone, facing the lips.[PHENOSCAPE:WD]." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0000165 ! mouth @@ -393237,6 +417005,8 @@ relationship: part_of UBERON:0000165 ! mouth id: UBERON:4300139 name: posterolingual region def: "The region of an anatomical structure, such as a tooth or jaw bone, oriented posteriorly and facing the lips." [PHENOSCAPE:WD] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0000165 ! mouth @@ -393245,6 +417015,8 @@ relationship: part_of UBERON:0000165 ! mouth id: UBERON:4300140 name: mesial region def: "The region of an anatomical structure, such as a tooth or jaw bone, facing the midline of the jaw." [PHENOSCAPE:WD] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393252,6 +417024,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300142 name: internal carotid foramen def: "Foramen for the passage of the internal carotid artery." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000051 ! braincase and otic capsule opening relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393270,6 +417044,8 @@ relationship: part_of UBERON:4000166 ! anal fin skeleton id: UBERON:4300144 name: profundus foramen def: "Foramen for the profundus or ophthalmic nerve." [PHENOSCAPE:AD] +subset: human_subset +subset: mouse_subset is_a: UBERON:3000051 ! braincase and otic capsule opening relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393285,6 +417061,8 @@ relationship: part_of UBERON:0000151 ! pectoral fin id: UBERON:4300150 name: gill membrane def: "Membrane organ that is usually supported by branchiostegal rays and forms the ventral and posterior wall of the gill cavity." [PHENOSCAPE:WD] +subset: human_subset +subset: mouse_subset synonym: "branchiostegal membrane" RELATED [] is_a: UBERON:0000094 ! membrane organ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393293,6 +417071,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300151 name: pelvic intercleithral cartilage def: "Cartilage element that lies between processes of the cleithrum and pelvic girdle in gobioid fishes. Posterodorsal to the ventral end of each cleithrum is a posteriorly projecting process. The pelvic intercleithral cartilage (an unpaired, median structure) forms a bridge between the processes (From Springer, 1983)." [http://www.sil.si.edu/smithsoniancontributions/Zoology/pdf_hi/SCTZ-0390.pdf] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element @@ -393303,6 +417083,8 @@ relationship: part_of UBERON:0007832 ! pelvic girdle skeleton id: UBERON:4300152 name: accessory nasal sac def: "Accessory nasal sacs are found in a variety of teleosts (Webb, 1993) and likely assist in ventilating the olfactory epithelium by transmitting pressure fluctuations associated with gill irrigation from theoral cavity to the nasal (or sensory) sac (Jakubowski,1975; Webb, 1993; Belanger et al., 2003). [def from Eastman, J. T. and Lannoo, M. J. (2004)]." [DOI:10.1002/jmor.10221] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000062 ! organ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393310,6 +417092,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300153 name: Sharpey's fiber def: "Sharpey's fibres (bone fibres, or perforating fibres) are a matrix of connective tissue consisting of bundles of strong collagenous fibres connecting periosteum to bone. They are part of the outer fibrous layer of periosteum, entering into the outer circumferential and interstitial lamellae of bone tissue." [https://en.wikipedia.org/wiki/Sharpey%27s_fibres] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002384 ! connective tissue relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393335,6 +417119,8 @@ relationship: part_of UBERON:0010710 ! pectoral fin skeleton [Term] id: UBERON:4300156 name: anterodorsal crest +subset: human_subset +subset: mouse_subset is_a: UBERON:4100000 ! skeletal element projection relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0004753 ! scapulocoracoid @@ -393343,6 +417129,8 @@ relationship: part_of UBERON:0004753 ! scapulocoracoid id: UBERON:4300157 name: midshaft def: "Region in the middle of the shaft of a long bone (e.g. humerus, femur etc)." [PHENOSCAPE:NI] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0002495 ! long bone @@ -393350,6 +417138,8 @@ relationship: part_of UBERON:0002495 ! long bone [Term] id: UBERON:4300158 name: ectepicondylar depression +subset: human_subset +subset: mouse_subset is_a: UBERON:0004704 ! bone fossa relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0006807 ! ectepicondyle of humerus @@ -393417,6 +417207,8 @@ relationship: part_of UBERON:2001873 ! head sensory canal system id: UBERON:4300177 name: replacement tooth row def: "Tooth row consisting of replacement teeth." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0009678 ! tooth row relationship: composed_primarily_of UBERON:0018296 ! replacement tooth relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393425,6 +417217,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300178 name: inner tooth row of dentary def: "Dentary tooth row that is lingual in position relative to other tooth rows." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001952 ! dentary tooth row relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393432,6 +417226,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300179 name: inner tooth row of premaxilla def: "Tooth row on the premaxilla that is lingually located relative to other tooth rows." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001833 ! premaxillary tooth row relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393439,6 +417235,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300180 name: isthmus def: "The fleshy throat region of a fish which extends forward from the ventral part of the chest and narrows anteriorly, and externally separating the two gill chambers; that narrowed portion of the breast which lies between the gill chambers and separates them." [PHENOSCAPE] {comment="http://www.fishbase.org/glossary/Glossary.php?q=isthmus"} +subset: human_subset +subset: mouse_subset is_a: UBERON:0034929 ! external soft tissue zone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393460,6 +417258,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300184 name: neural spine 5 def: "Neural spine that is associated with the fifth vertebra." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001076 ! neural spine relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393467,6 +417267,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300185 name: neural spine 6 def: "Neural spine that is associated with the sixth vertebra." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001076 ! neural spine relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393474,6 +417276,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300186 name: neural spine 7 def: "Neural spine that is associated with the seventh vertebra." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001076 ! neural spine relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393494,6 +417298,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300189 name: parapophysis 3 def: "Parapophysis that is the lateral projection from the third centrum. Parapophysis 3 is bilaterally paired." [PHENOSCAPE:WD] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003109 ! parapophysis [Term] @@ -393533,12 +417339,16 @@ relationship: never_in_taxon NCBITaxon:314146 ! Euarchontoglires id: UBERON:4300195 name: rostral tubule def: "Consists of a set of tubuli occupying the space between the external dermal bones above the dorsal and anterior wal of the nasal capsule below. Thomson and Campbell (1971)." [PHENOSCAPE:AD] +subset: human_subset +subset: mouse_subset synonym: "rostral tubuli" EXACT OMO:0003004 [] is_a: UBERON:0000481 ! multi-tissue structure [Term] id: UBERON:4300196 name: processus descendens of sphenoid +subset: human_subset +subset: mouse_subset synonym: "otico-sphenoid bridge" EXACT [] is_a: UBERON:0004530 ! bony projection is_a: UBERON:0010313 ! neural crest-derived structure @@ -393548,6 +417358,8 @@ relationship: part_of UBERON:0001677 ! sphenoid bone id: UBERON:4300197 name: Westoll line def: "More or less concentric lines of discontinuity in the cosmine of Dipnoi, probably due to cyclic resorption and redeposition during growth occurring on the bases of individual scales and also as large structures between headshield plates.[Fishbase]." [https://www.fishbase.de/glossary/Glossary.php?q=Westoll+lines] +subset: human_subset +subset: mouse_subset synonym: "Westoll lines" EXACT OMO:0003004 [] is_a: UBERON:0003102 ! surface structure is_a: UBERON:0010313 ! neural crest-derived structure @@ -393563,6 +417375,8 @@ is_a: UBERON:2100271 ! radial element id: UBERON:4300199 name: postsplenial def: "Dermal bone of the lower jaw." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004768 ! bone of lower jaw is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003278 ! skeleton of lower jaw @@ -393571,6 +417385,8 @@ relationship: part_of UBERON:0003278 ! skeleton of lower jaw id: UBERON:4300200 name: postparietal shield def: "Dermal bones (postparietals, supratemporals, intertemporals, extrascapulars) posterior to the intracranial joint. Forey 1997." [ISBN:978-0-412-78480-4] +subset: human_subset +subset: mouse_subset synonym: "parietal shield" EXACT [] is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0010323 ! cranial skeletal system @@ -393579,6 +417395,8 @@ relationship: part_of UBERON:0010323 ! cranial skeletal system id: UBERON:4300201 name: subepiotic fossa def: "Fossa for epaxial musculature inserting on the braincase. Forey et al. 1996." [ISBN:978-0-12-670950-6] +subset: human_subset +subset: mouse_subset is_a: UBERON:0008789 ! cranial fossa relationship: part_of UBERON:0001703 ! neurocranium @@ -393586,6 +417404,8 @@ relationship: part_of UBERON:0001703 ! neurocranium id: UBERON:4300202 name: endoskeletal cranial joint def: "The braincase of most plesiomorphic sarcopterygians is divided by the intracranial point into ethmosphenoid and otic-occipital portions each covered by dermal bones. The function of the joint is presumably to increase the gape of the mouth rapidly during opening phases. (Forey 1997)." [ISBN:978-0-412-78480-4] +subset: human_subset +subset: mouse_subset synonym: "endoskeletal intracranial joint" EXACT [] is_a: UBERON:0000982 ! skeletal joint relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393595,6 +417415,8 @@ relationship: part_of UBERON:0001703 ! neurocranium id: UBERON:4300203 name: tectum orbitale def: "The dorsal portion of the endocranium that covers the orbital region. Hanken and Hall (1993)." [ISBN:9780226315706] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010363 ! endochondral element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001703 ! neurocranium @@ -393611,6 +417433,8 @@ replaced_by: UBERON:4300152 id: UBERON:4300205 name: palato-maxillary ligament def: "Ligament between the palatine and maxilla [Stiassny 1986]." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000211 ! ligament relationship: connects UBERON:0001682 ! palatine bone relationship: connects UBERON:0002397 ! maxilla @@ -393620,6 +417444,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300206 name: mandibulo-lacrimal ligament def: "Ligament that connects the ventromedial end of the lacrimal to the anguloarticular (or 'mandible'). Parenti (2008)." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000211 ! ligament relationship: connects UBERON:0004744 ! articular/anguloarticular relationship: connects UBERON:2000223 ! infraorbital 1 @@ -393629,6 +417455,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300207 name: submandibular bone comment: See Gardiner (1984) for discussion of possible homology with branchiostegal rays. Gardiner, B. G. (1984). The Relationships of the palaeoniscid fishes: a review based on new specimens of Mimia and Moythomasia from the Upper Devonian of Western Australia. Bulletin of the British Museum of Natural History (Geology), 37(4), 173-428. +subset: human_subset +subset: mouse_subset is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0003113 ! dermatocranium @@ -393638,6 +417466,8 @@ relationship: part_of UBERON:4300208 ! submandibular series id: UBERON:4300208 name: submandibular series def: "A series of plate like bones found ventrally to the jaw." [PHENOSCAPE:AD] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster relationship: composed_primarily_of UBERON:4300207 ! submandibular bone relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393645,6 +417475,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300209 name: palato-vomerine ligament +subset: human_subset +subset: mouse_subset synonym: "palatovomerine ligament" EXACT [] is_a: UBERON:0000211 ! ligament relationship: connects UBERON:0001682 ! palatine bone @@ -393655,6 +417487,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300210 name: transversus epibranchialis 2 def: "Dorsal gill-arch muscle connecting right and left epibranchial 2s. Springer and Johnson (2015)." [https://doi.org/10.1643/CI-14-152] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000933 ! chordate pharyngeal muscle relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393662,18 +417496,24 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300211 name: lateral plate def: "Body plates on the lateral sides of the body that occur as single bilateral rows and their number is highly heritable. Bell and Richkind (1981)." [https://doi.org/10.1086/283693] +subset: human_subset +subset: mouse_subset is_a: UBERON:2002053 ! bony plate [Term] id: UBERON:4300212 name: acrodin def: "Odontoid tissue forming a cap on teeth found in teeth of actinopterygian fishes." [http://www.fishbase.org/glossary/Glossary.php?q=acrodin] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010365 ! odontoid tissue [Term] id: UBERON:4300213 name: supraneural 1 element def: "Postcranial axial skeletal element located dorsal to vertebra 1." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393681,6 +417521,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300214 name: supraneural 2 element def: "Postcranial axial skeletal element located dorsal to vertebra 2." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393688,6 +417530,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300215 name: supraneural 3 element def: "Postcranial axial skeletal element located dorsal to vertebrae 3 and 4." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393695,6 +417539,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300216 name: supraneural 4 element def: "Supraneural element dorsal to neural spine 4." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393702,6 +417548,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300217 name: supraneural 5 element def: "Supraneural element dorsal to neural spine 5." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393709,6 +417557,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300218 name: supraneural 6 element def: "Supraneural element dorsal to neural spine 6." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393716,6 +417566,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300219 name: supraneural 7 element def: "Supraneural element dorsal to neural spine 7." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393723,6 +417575,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300220 name: supraneural 8 element def: "Supraneural element dorsal to neural spine 8." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393730,6 +417584,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300221 name: supraneural 9 element def: "Supraneural element dorsal to neural spine 9." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:4300035 ! supraneural element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393744,6 +417600,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300223 name: precaudal vertebra def: "Vertebral bone lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal. Bird and Mabee, 2003." [https://doi.org/10.1002/dvdy.10387] +subset: human_subset +subset: mouse_subset xref: TAO:0000263 xref: ZFA:0000263 is_a: UBERON:0002412 ! vertebra @@ -393757,12 +417615,16 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300224 name: precaudal vertebra endochondral element def: "Vertebral elements lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal.(Bird and Mabee, 2003)." [https://doi.org/10.1002/dvdy.10387] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010913 ! vertebral element [Term] id: UBERON:4300225 name: precaudal vertebra cartilage element def: "Vertebral cartilage elements lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal.(Bird and Mabee, 2003)." [https://doi.org/10.1002/dvdy.10387] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011094 ! vertebra cartilage element is_a: UBERON:4300224 ! precaudal vertebra endochondral element intersection_of: UBERON:4300224 ! precaudal vertebra endochondral element @@ -393774,6 +417636,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300226 name: forelimb bud mesenchyme def: "Mesenchyme that is part of a forelimb bud." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003413 ! pectoral appendage bud mesenchyme is_a: UBERON:0010328 ! limb bud mesenchyme intersection_of: UBERON:0010328 ! limb bud mesenchyme @@ -393785,6 +417649,8 @@ relationship: part_of UBERON:0005417 ! forelimb bud id: UBERON:4300227 name: hindlimb bud mesenchyme def: "Mesenchyme that is part of a hindlimb bud." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003412 ! pelvic appendage bud mesenchyme is_a: UBERON:0010328 ! limb bud mesenchyme intersection_of: UBERON:0010328 ! limb bud mesenchyme @@ -393836,6 +417702,8 @@ relationship: part_of UBERON:4300230 ! forelimb wing bud id: UBERON:4300233 name: mammiliform tooth def: "Calcareous tooth with a hyptertrophied base." [http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252004000300008] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001091 ! calcareous tooth relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393858,6 +417726,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300236 name: rib of vertebra 7 def: "Rib that articulates with the parapophysis of the seventh centrum." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002228 ! rib relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393865,6 +417735,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300237 name: rib of vertebra 8 def: "Rib that articulates with the parapophysis of the eighth centrum." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002228 ! rib relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393878,6 +417750,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300239 name: hind flipper def: "Hindlimb that is used to propel an animal through water." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "hindflipper" EXACT [] is_a: UBERON:0002103 ! hindlimb relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393886,6 +417760,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300240 name: rostral ossicle def: "Ossicle that surrounds the sensory canals of the snout when passing from the ethmoidal commissure to the infraorbital series and have first been noticed by Nybelin [14] in Elops. From: Filleul and Lavoué. (2001). Basal teleosts and the question of elopomorph monophyly. Morphological and molecular approaches. Comptes rendus de l'Académie des sciences. Série III, Sciences de la vie. 324. 393-9. 10.1016/S0764-4469(00)01302-0." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010911 ! ossicle relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393908,6 +417784,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300243 name: premaxillary tooth 2 def: "Premaxillary tooth that is the second tooth in a premaxillary tooth series, and positioned adjacent to the symphyseal tooth." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001626 ! premaxillary tooth relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393915,6 +417793,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300244 name: premaxillary tooth 3 def: "Premaxillary tooth that is the third tooth in a premaxillary tooth series, and positioned adjacent to the second tooth." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001626 ! premaxillary tooth relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393922,6 +417802,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300246 name: dentary tooth 2 def: "Dentary tooth that is the second tooth in a dentary tooth series, and positioned adjacent to the symphyseal tooth." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011594 ! dentary tooth relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393929,6 +417811,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300247 name: dentary tooth 3 def: "Dentary tooth that is the third tooth in a dentary tooth series, and positioned adjacent to the symphyseal tooth." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011594 ! dentary tooth relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -393943,6 +417827,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300249 name: lateral occipital foramen def: "Foramen that has the exoccipital as the anterior and dorsal rim. The occipital forms the anterior rim during early development. [database_cross_reference: GOC:cvs][database_cross_reference: https://orcid.org/0000-0002-2244-7917][database_cross_reference: ZFIN:ZDB-PUB-961014-192]." [ZFIN:ZDB-PUB-961014-192] +subset: human_subset +subset: mouse_subset xref: ZFA:0005892 is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0001693 ! exoccipital bone @@ -393961,6 +417847,8 @@ is_a: UBERON:2001830 ! caudal fin ventral procurrent ray id: UBERON:4300252 name: ethmo-palatine cartilage def: "The ethmo-palatine cartilage (EPC) is a distinct body situated between the posterior surface of the upper arm of the premaxilla and the anterior margin of the palatine. There is usually only a single cartilage mass lying between these bones, although that cartilage is apparently subdivided into two units in some taxa (e.g., the Old World characiform family Citharinidae, Vari, 1979:294). Vari 1989a." [https://doi.org/10.5479/si.00810282.471] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0013765 ! digestive system element @@ -393987,6 +417875,8 @@ relationship: part_of UBERON:4000173 ! pelvic fin lepidotrichium [Term] id: UBERON:4300263 name: supraneural 4 cartilage +subset: human_subset +subset: mouse_subset is_a: UBERON:4300036 ! supraneural cartilage is_a: UBERON:4300216 ! supraneural 4 element intersection_of: UBERON:4300216 ! supraneural 4 element @@ -393996,6 +417886,8 @@ relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:4300264 name: supraneural 5 cartilage +subset: human_subset +subset: mouse_subset is_a: UBERON:4300036 ! supraneural cartilage is_a: UBERON:4300217 ! supraneural 5 element intersection_of: UBERON:4300217 ! supraneural 5 element @@ -394005,6 +417897,8 @@ relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:4300265 name: supraneural 6 cartilage +subset: human_subset +subset: mouse_subset is_a: UBERON:4300036 ! supraneural cartilage is_a: UBERON:4300218 ! supraneural 6 element intersection_of: UBERON:4300218 ! supraneural 6 element @@ -394014,6 +417908,8 @@ relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:4300266 name: supraneural 7 cartilage +subset: human_subset +subset: mouse_subset is_a: UBERON:4300036 ! supraneural cartilage is_a: UBERON:4300219 ! supraneural 7 element intersection_of: UBERON:4300219 ! supraneural 7 element @@ -394023,6 +417919,8 @@ relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:4300267 name: supraneural 8 cartilage +subset: human_subset +subset: mouse_subset is_a: UBERON:4300036 ! supraneural cartilage is_a: UBERON:4300220 ! supraneural 8 element intersection_of: UBERON:4300220 ! supraneural 8 element @@ -394032,6 +417930,8 @@ relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:4300268 name: supraneural 9 cartilage +subset: human_subset +subset: mouse_subset is_a: UBERON:4300036 ! supraneural cartilage is_a: UBERON:4300221 ! supraneural 9 element intersection_of: UBERON:4300221 ! supraneural 9 element @@ -394042,6 +417942,8 @@ relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue id: UBERON:4300269 name: epioccipital bridge def: "Extension of the exoccipital that extends over the posttemporal fossa." [http://dx.doi.org/10.1590/S1679-62252010000300001] +subset: human_subset +subset: mouse_subset synonym: "epiotic bridge" EXACT [] is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ @@ -394052,6 +417954,8 @@ relationship: part_of UBERON:2001412 ! epiotic id: UBERON:4300270 name: outer tooth row of premaxilla def: "Tooth row on the premaxilla that is labially located relative to other tooth rows." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001833 ! premaxillary tooth row relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -394086,6 +417990,8 @@ relationship: part_of UBERON:4500004 ! adipose fin skeleton id: UBERON:4300275 name: suborbital stay def: "A backwards extension of the third circumorbital bone (part of the lateral head/cheek skeleton, below the eye socket) across the cheek to the preoperculum, to which it is connected in most species [wikipedia]." [https://en.wikipedia.org/wiki/Scorpaeniformes] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001408 ! infraorbital 3 @@ -394094,6 +418000,8 @@ relationship: part_of UBERON:2001408 ! infraorbital 3 id: UBERON:4300279 name: outer tooth row of dentary def: "Dentary tooth row that is labial in position relative to other tooth rows." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:2001952 ! dentary tooth row relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -394101,6 +418009,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300280 name: metapterygoid tooth def: "Tooth that is attached to the metapterygoid." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "metapterygoid teeth" RELATED [] is_a: UBERON:0001091 ! calcareous tooth relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -394118,12 +418028,16 @@ relationship: part_of UBERON:4000177 ! dorsal fin lepidotrichium id: UBERON:4300282 name: dorsal myorhabdoid bone def: "Myorhabdoid bones located dorsal to the epineurals." [PHENOSCAPE] {comment="https://doi.org/10.1111/cla.12345"} +subset: human_subset +subset: mouse_subset is_a: UBERON:2002127 ! myorhabdoid bone [Term] id: UBERON:4300283 name: ventral myorhabdoid bone def: "Myorhabdoid bones located ventral to the epipleurals." [PHENOSCAPE] {comment="https://doi.org/10.1111/cla.12345"} +subset: human_subset +subset: mouse_subset is_a: UBERON:2002127 ! myorhabdoid bone [Term] @@ -394139,6 +418053,8 @@ relationship: part_of UBERON:4000172 ! lepidotrichium id: UBERON:4300285 name: second preethmoid cartilage def: "Cartilage element found between the preethmoid and maxilla." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:4300286 ! second preethmoid element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -394147,6 +418063,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300286 name: second preethmoid element def: "Endochondral skeletal element found between the preethmoid and maxilla." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010363 ! endochondral element relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0003112 ! olfactory region @@ -394155,6 +418073,8 @@ relationship: part_of UBERON:0003112 ! olfactory region id: UBERON:4300287 name: nasal barbel def: "Barbel that is associated with a nostril. Nasal barbels are paired." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:2000622 ! barbel relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -394163,6 +418083,8 @@ id: UBERON:4300288 name: rictal barbel def: "Barbel located from the fleshy corner of the mouth." [PHENOSCAPE] comment: Definition needs review. Rictal barbels are described for trichomycterids and other catfishes. +subset: human_subset +subset: mouse_subset is_a: UBERON:2000622 ! barbel relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -394279,6 +418201,8 @@ relationship: skeleton_of UBERON:2000251 ! adipose fin id: UBERON:4500005 name: prenasal ossicle def: "Tubular ossifications around extension of nasal lateral line canal in fishes; typically one or two." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003462 ! facial bone is_a: UBERON:0008907 ! dermal bone relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 @@ -394341,6 +418265,8 @@ relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 id: UBERON:4500012 name: hypobranchial series def: "Anatomical cluster that consists of the hypobranchial elements within an individual." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:2001893 ! hypobranchial element @@ -394352,6 +418278,8 @@ relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton id: UBERON:4500013 name: pharyngobranchial series def: "Anatomical cluster that consists of the pharyngobranchial elements within an individual." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:2001909 ! pharyngobranchial element @@ -394363,6 +418291,8 @@ relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton id: UBERON:4500014 name: basibranchial series def: "Anatomical cluster that consists of the basibranchial elements within an individual." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:0013746 ! basibranchial element @@ -394375,6 +418305,8 @@ id: UBERON:4500016 name: premaxilla articular process def: "Pharyngeal arch bone immediately posterior to the ascending process, the medial surface of which articulates with the anterior end of the maxillary." [PHENOSCAPE] comment: The change from a premaxilla in which the ascending and articular processes are separate to one in which they are firmly united has occurred many times in higher teleosts. - Gosline, 1987 (Jaw Structures and Movements in Higher Teleostean Fishes) +subset: human_subset +subset: mouse_subset synonym: "articular process of the premaxilla" EXACT [] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -394385,6 +418317,8 @@ relationship: part_of UBERON:0002244 ! premaxilla id: UBERON:4500017 name: interarcual bone def: "Pharyngeal arch bone located between uncinate process of epibranchial 1 and pharyngobranchial 2." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002513 ! endochondral bone relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 relationship: develops_from UBERON:2002269 ! interarcual cartilage @@ -394394,6 +418328,8 @@ relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton id: UBERON:4500018 name: premaxilla maxillary process def: "Process of the premaxilla that extends upward, and often lies against the medial surface of the maxillary." [PHENOSCAPE] +subset: human_subset +subset: mouse_subset synonym: "postmaxillary process" EXACT [] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection @@ -394415,6 +418351,8 @@ relationship: part_of UBERON:0000152 ! pelvic fin id: UBERON:5001463 name: manual digit 1 plus metapodial segment def: "A subdivision of the autopod consisting of manual digit 1 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "manual digit 1" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 1 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 1 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394433,6 +418371,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5001466 name: pedal digit plus metapodial segment def: "A subdivision of the autopod consisting of pedal digit plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pedal digit" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394449,6 +418389,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5002389 name: manual digit plus metapodial segment def: "A subdivision of the autopod consisting of manual digit plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "manual digit" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394465,6 +418407,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5002544 name: digit plus metapodial segment def: "A subdivision of the autopod consisting of digit plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "digit ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394481,6 +418425,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5003622 name: manual digit 2 plus metapodial segment def: "A subdivision of the autopod consisting of manual digit 2 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "manual digit 2" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 2 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 2 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394499,6 +418445,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5003623 name: manual digit 3 plus metapodial segment def: "A subdivision of the autopod consisting of manual digit 3 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "manual digit 3" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 3 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 3 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394517,6 +418465,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5003624 name: manual digit 4 plus metapodial segment def: "A subdivision of the autopod consisting of manual digit 4 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "manual digit 4" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 4 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 4 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394535,6 +418485,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5003625 name: manual digit 5 plus metapodial segment def: "A subdivision of the autopod consisting of manual digit 5 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "manual digit 5" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 5 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 5 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394553,6 +418505,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5003631 name: pedal digit 1 plus metapodial segment def: "A subdivision of the autopod consisting of pedal digit 1 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 1" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 1 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 1 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394571,6 +418525,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5003632 name: pedal digit 2 plus metapodial segment def: "A subdivision of the autopod consisting of pedal digit 2 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 2" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 2 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 2 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394589,6 +418545,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5003633 name: pedal digit 3 plus metapodial segment def: "A subdivision of the autopod consisting of pedal digit 3 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 3" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 3 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 3 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394607,6 +418565,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5003634 name: pedal digit 4 plus metapodial segment def: "A subdivision of the autopod consisting of pedal digit 4 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 4" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 4 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 4 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394625,6 +418585,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5003635 name: pedal digit 5 plus metapodial segment def: "A subdivision of the autopod consisting of pedal digit 5 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 5" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 5 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 5 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394643,6 +418605,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5006048 name: digit 1 plus metapodial segment def: "A subdivision of the autopod consisting of digit 1 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit 1" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "digit 1 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 1 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394659,6 +418623,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5006049 name: digit 2 plus metapodial segment def: "A subdivision of the autopod consisting of digit 2 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit 2" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "digit 2 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 2 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394675,6 +418641,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5006050 name: digit 3 plus metapodial segment def: "A subdivision of the autopod consisting of digit 3 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit 3" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "digit 3 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 3 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394691,6 +418659,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5006051 name: digit 4 plus metapodial segment def: "A subdivision of the autopod consisting of digit 4 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit 4" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "digit 4 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 4 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394707,6 +418677,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5006052 name: digit 5 plus metapodial segment def: "A subdivision of the autopod consisting of digit 5 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit 5" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "digit 5 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 5 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394723,6 +418695,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5011981 name: manual digit 6 plus metapodial segment def: "A subdivision of the autopod consisting of manual digit 6 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "manual digit 6" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 6 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 6 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394741,6 +418715,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5011982 name: manual digit 7 plus metapodial segment def: "A subdivision of the autopod consisting of manual digit 7 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "manual digit 7" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 7 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 7 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394759,6 +418735,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5011983 name: manual digit 8 plus metapodial segment def: "A subdivision of the autopod consisting of manual digit 8 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "manual digit 8" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 8 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 8 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394777,6 +418755,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5011984 name: pedal digit 6 plus metapodial segment def: "A subdivision of the autopod consisting of pedal digit 6 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 6" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 6 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 6 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394793,6 +418773,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5012137 name: pedal digit 7 plus metapodial segment def: "A subdivision of the autopod consisting of pedal digit 7 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 7" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 7 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 7 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394809,6 +418791,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5012138 name: pedal digit 8 plus metapodial segment def: "A subdivision of the autopod consisting of pedal digit 8 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 8" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 8 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 8 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] @@ -394870,6 +418854,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5101463 name: manual digit 1 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 1 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "manual digit 1" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 1 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit I digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -394886,6 +418872,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5101466 name: pedal digit digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pedal digit" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:5102544 ! individual digit of digitopodial skeleton @@ -394900,6 +418888,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5102389 name: manual digit digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "manual digit" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:5102544 ! individual digit of digitopodial skeleton @@ -394914,6 +418904,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5102544 name: individual digit of digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of a single digit plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0004120 ! mesoderm-derived structure @@ -394929,6 +418921,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5103622 name: manual digit 2 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 2 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "manual digit 2" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 2 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit II digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -394945,6 +418939,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5103623 name: manual digit 3 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 3 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "manual digit 3" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 3 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit III digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -394961,6 +418957,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5103624 name: manual digit 4 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 4 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "manual digit 4" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 4 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit IV digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -394977,6 +418975,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5103625 name: manual digit 5 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 5 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "manual digit 5" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 5 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit V digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -394993,6 +418993,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5103631 name: pedal digit 1 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 1 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 1" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 1 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit I digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -395009,6 +419011,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5103632 name: pedal digit 2 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 2 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 2" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 2 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit II digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -395025,6 +419029,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5103633 name: pedal digit 3 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 3 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 3" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 3 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit III digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -395041,6 +419047,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5103634 name: pedal digit 4 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 4 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 4" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 4 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit IV digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -395057,6 +419065,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5103635 name: pedal digit 5 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 5 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 5" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 5 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit V digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -395073,6 +419083,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5106048 name: digit 1 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 1 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit 1" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 1 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "digit I digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -395088,6 +419100,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5106049 name: digit 2 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 2 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit 2" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 2 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "digit II digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -395103,6 +419117,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5106050 name: digit 3 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 3 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit 3" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 3 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "digit III digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -395118,6 +419134,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5106051 name: digit 4 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 4 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit 4" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 4 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "digit IV digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -395133,6 +419151,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5106052 name: digit 5 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 5 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "digit 5" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit 5 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "digit V digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -395148,6 +419168,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5111981 name: manual digit 6 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 6 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "manual digit 6" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 6 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit VI digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -395164,6 +419186,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5111982 name: manual digit 7 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 7 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "manual digit 7" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 7 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit VII digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -395180,6 +419204,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5111983 name: manual digit 8 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 8 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "manual digit 8" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit 8 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "manual digit VIII digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -395196,6 +419222,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5111984 name: pedal digit 6 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 6 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 6" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 6 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit VI digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -395211,6 +419239,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5112137 name: pedal digit 7 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 7 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 7" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 7 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit VII digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -395226,6 +419256,8 @@ property_value: curator_notes "this class represents a series of phalanges plus id: UBERON:5112138 name: pedal digit 8 digitopodial skeleton def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 8 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset synonym: "pedal digit 8" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit 8 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "pedal digit VIII digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] @@ -395299,6 +419331,8 @@ relationship: part_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:6000004 name: panarthropod head +subset: human_subset +subset: mouse_subset xref: FBbt:00000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000033 ! head intersection_of: UBERON:0000033 ! head @@ -396428,6 +420462,7 @@ is_a: UBERON:0003339 ! ganglion of central nervous system relationship: develops_from UBERON:6001060 ! insect embryonic brain relationship: part_of UBERON:6001730 ! insect larval head relationship: part_of UBERON:6001919 ! insect embryonic/larval central nervous system +relationship: part_of UBERON:8450003 ! embryonic craniocervical region [Term] id: UBERON:6001925 @@ -397071,6 +421106,8 @@ relationship: part_of UBERON:0000984 ! imaginal disc-derived wing id: UBERON:6005380 name: insect pharynx def: "Section of the insect foregut anterior to the esophagus." [FBbt:00005380, http://orcid.org/0000-0002-6601-2165] +subset: human_subset +subset: mouse_subset xref: FBbt:00005380 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004921 {source="FBbt"} ! subdivision of digestive tract is_a: UBERON:0006562 {note="parent may be obsoleted"} ! pharynx @@ -397263,6 +421300,7 @@ relationship: capable_of GO:0050908 ! detection of light stimulus involved in vi relationship: develops_from UBERON:6005830 ! insect Bolwig organ primordium relationship: part_of UBERON:0000323 ! late embryo relationship: part_of UBERON:6001731 ! insect larval ocular segment +relationship: part_of UBERON:8450003 ! embryonic craniocervical region [Term] id: UBERON:6005830 @@ -397776,6 +421814,8 @@ consider: FOVT:0000006 id: UBERON:7500046 name: proximal-most point of head of femur def: "The proximal-most point of the head of a femur." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006983 ! anatomical point intersection_of: UBERON:0006983 ! anatomical point intersection_of: proximalmost_part_of UBERON:0006767 ! head of femur @@ -397787,6 +421827,8 @@ relationship: proximalmost_part_of UBERON:0006767 ! head of femur id: UBERON:7500047 name: proximal-most point of head of humerus def: "The proximal-most point of the head of a humerus." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006983 ! anatomical point intersection_of: UBERON:0006983 ! anatomical point intersection_of: proximalmost_part_of UBERON:0006801 ! proximal head of humerus @@ -397798,6 +421840,8 @@ relationship: proximalmost_part_of UBERON:0006801 ! proximal head of humerus id: UBERON:7500048 name: proximal-most point of ventral tubercle of humerus def: "The proximal-most point of the ventral tubercle of a humerus." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006983 ! anatomical point intersection_of: UBERON:0006983 ! anatomical point intersection_of: proximalmost_part_of UBERON:0011187 ! ventral tubercle of humerus @@ -397809,6 +421853,8 @@ relationship: proximalmost_part_of UBERON:0011187 ! ventral tubercle of humerus id: UBERON:7500049 name: proximal-most point of greater trochanter of femur def: "The proximal-most point of the greater trochanter of a femur." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006983 ! anatomical point intersection_of: UBERON:0006983 ! anatomical point intersection_of: proximalmost_part_of UBERON:0002503 ! greater trochanter @@ -397836,6 +421882,8 @@ consider: FOVT:0000008 id: UBERON:7500052 name: lower fourth secondary molar tooth def: "The molar tooth of the lower jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "lower fourth permanent molar tooth" EXACT [] synonym: "m4" RELATED OMO:0003000 [] is_a: UBERON:0013621 ! lower secondary molar tooth @@ -397845,6 +421893,7 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 id: UBERON:7500053 name: lower fourth secondary premolar tooth def: "The premolar tooth of the lower jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset synonym: "lower fourth permanent premolar tooth" EXACT [] synonym: "p4" RELATED OMO:0003000 [] is_a: UBERON:0016453 ! lower secondary premolar tooth @@ -397860,6 +421909,7 @@ relationship: part_of UBERON:0007774 ! secondary dentition id: UBERON:7500054 name: lower third secondary premolar tooth def: "The premolar tooth of the lower jaw that is phylogenetically number 3." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset synonym: "lower third permanent premolar tooth" EXACT [] synonym: "p3" RELATED OMO:0003000 [] is_a: UBERON:0016453 ! lower secondary premolar tooth @@ -397869,6 +421919,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 id: UBERON:7500055 name: molar tooth 4 def: "The molar tooth of the upper or lower jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "fourth molar tooth" EXACT [] synonym: "molar 4" EXACT [] synonym: "molar 4 tooth" EXACT [] @@ -397879,6 +421931,7 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 id: UBERON:7500056 name: premolar 3 def: "The premolar tooth of the upper or lower jaw that is phylogenetically number 3." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset synonym: "premolar tooth 3" EXACT [] synonym: "third premolar tooth" EXACT [] is_a: UBERON:0007120 ! premolar tooth @@ -397888,6 +421941,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 id: UBERON:7500057 name: upper fourth secondary molar tooth def: "The molar tooth of the upper jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "M4" RELATED OMO:0003000 [] synonym: "upper fourth permanent molar tooth" EXACT [] is_a: UBERON:0013619 ! upper secondary molar tooth @@ -397903,6 +421958,7 @@ relationship: part_of UBERON:0007774 ! secondary dentition id: UBERON:7500058 name: upper fourth secondary premolar tooth def: "The premolar tooth of the upper jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset synonym: "P4" RELATED OMO:0003000 [] synonym: "upper fourth permanent premolar tooth" EXACT [] is_a: UBERON:0016452 ! upper secondary premolar tooth @@ -397912,6 +421968,7 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 id: UBERON:7500059 name: upper third secondary premolar tooth def: "The premolar tooth of the upper jaw that is phylogenetically number 3." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset synonym: "P3" RELATED OMO:0003000 [] synonym: "upper third permanent premolar tooth" EXACT [] is_a: UBERON:0016452 ! upper secondary premolar tooth @@ -397929,6 +421986,8 @@ consider: FOVT:0000009 id: UBERON:7500061 name: trochlear ridge of humerus def: "The ridge of the trochlea on a humerus lies in the middle of the distal end of a humerus on the lateral side of the trochlea and the medial side of the capitulum (capitellum)." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0000144 ! trochlea of humerus @@ -397937,6 +421996,8 @@ relationship: part_of UBERON:0000144 ! trochlea of humerus id: UBERON:7500062 name: tibial tuberosity def: "The tibial tuberosity is on the anterior side of a tibia and is where a patella ligament attaches." [https://en.wikipedia.org/wiki/Tuberosity_of_the_tibia] +subset: human_subset +subset: mouse_subset synonym: "fossa digitalis" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle @@ -397950,6 +422011,8 @@ relationship: part_of UBERON:0008772 ! proximal epiphysis of tibia id: UBERON:7500063 name: trochlea of talus def: "The articular surface of a talus that interacts with a tibia. It has a deep depression that forms the trochlear groove and is bounded by the medial and lateral condyles." [https://en.wikipedia.org/wiki/Talus_bone] +subset: human_subset +subset: mouse_subset synonym: "trochlea for tibia" EXACT [] synonym: "trochlea of astragalus" EXACT [] synonym: "trochlea tali" EXACT [] @@ -397960,6 +422023,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 id: UBERON:7500064 name: trochlear groove of talus def: "The furrow between the lateral and medial condyles of the trochlea of talus." [https://en.wikipedia.org/wiki/Talus_bone] +subset: human_subset +subset: mouse_subset synonym: "trochlear groove of astragalus" EXACT [] is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -397969,6 +422034,8 @@ relationship: part_of UBERON:0002395 ! talus id: UBERON:7500065 name: condyle of talus def: "An articular prominence of a talus that engages with the tibia." [http://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "condyle of astragalus" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0009979 ! condyle @@ -397981,6 +422048,8 @@ relationship: part_of UBERON:0002395 ! talus id: UBERON:7500066 name: medial condyle of talus def: "The medial condyle of talus is an articular prominence of bone on medial side of the trochlea of a talus, which engages with the tibia." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "medial condyle of astragalus" EXACT [] is_a: UBERON:7500065 ! condyle of talus relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -397990,6 +422059,8 @@ relationship: part_of UBERON:0002395 ! talus id: UBERON:7500067 name: lateral condyle of talus def: "The lateral condyle of talus is an articular prominence of bone on the lateral side of the trochlea of a talus, which engages with the tibia." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "lateral condyle of astragalus" EXACT [] is_a: UBERON:7500065 ! condyle of talus relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -397999,6 +422070,8 @@ relationship: part_of UBERON:0002395 ! talus id: UBERON:7500068 name: ridge of medial condyle of talus def: "The crest of the medial condyle of a talus." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "ridge of medial condyle of astragalus" EXACT [] is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398008,6 +422081,8 @@ relationship: part_of UBERON:7500066 ! medial condyle of talus id: UBERON:7500069 name: ridge of lateral condyle of talus def: "The crest of the lateral condyle of a talus." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "ridge of lateral condyle of astragalus" EXACT [] is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398017,6 +422092,8 @@ relationship: part_of UBERON:7500067 ! lateral condyle of talus id: UBERON:7500070 name: sulcus tali def: "A depression that runs between the two facets of a talus that interact with a calcaneum." [https://en.wikipedia.org/wiki/Talus_bone] +subset: human_subset +subset: mouse_subset synonym: "sulcus for flexor hallucis longus tendon" EXACT [] is_a: UBERON:0000093 ! sulcus relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398026,6 +422103,7 @@ relationship: part_of UBERON:0002395 ! talus id: UBERON:7500071 name: rostrum def: "An anatomical structure that protrudes from the head region. In vertebrates, this includes the part of the cranium (skull) in front of the zygomatic arches that also holds the teeth, palat, and nasal cavity. In invertebrates it is the forward extension of the carapace and/or the piercing mouthparts." [http://orcid.org/0000-0003-2699-3066] +subset: mouse_subset synonym: "beak" RELATED [] synonym: "muzzle" RELATED [] synonym: "snout" RELATED [] @@ -398039,6 +422117,8 @@ relationship: part_of UBERON:0004089 ! midface id: UBERON:7500073 name: left nasal bone def: "Nasal bone on the left side of an organism when in anatomical position." [http://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001681 ! nasal bone intersection_of: UBERON:0001681 ! nasal bone intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism @@ -398049,6 +422129,8 @@ relationship: in_left_side_of UBERON:0000468 ! multicellular organism id: UBERON:7500074 name: right nasal bone def: "Nasal bone on the right side of an organism when in anatomical position." [http://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001681 ! nasal bone intersection_of: UBERON:0001681 ! nasal bone intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism @@ -398059,6 +422141,8 @@ relationship: in_right_side_of UBERON:0000468 ! multicellular organism id: UBERON:7500075 name: left zygomatic arch def: "Zygomatic arch on the left side of an organism when in anatomical position." [http://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002500 ! zygomatic arch intersection_of: UBERON:0002500 ! zygomatic arch intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism @@ -398069,6 +422153,8 @@ relationship: in_left_side_of UBERON:0000468 ! multicellular organism id: UBERON:7500076 name: right zygomatic arch def: "Zygomatic arch on the right side of an organism when in anatomical position." [http://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002500 ! zygomatic arch intersection_of: UBERON:0002500 ! zygomatic arch intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism @@ -398087,6 +422173,8 @@ replaced_by: UBERON:4200096 id: UBERON:7500078 name: styloid process of radius def: "A condyle on the distal end and lateral side of a radius." [https://en.wikipedia.org/wiki/Radial_styloid_process] +subset: human_subset +subset: mouse_subset synonym: "radial condyle" EXACT [] synonym: "radial styloid process" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure @@ -398112,6 +422200,8 @@ relationship: part_of UBERON:0004407 ! distal epiphysis of radius id: UBERON:7500080 name: articular surface for carpals def: "The articular surface on the distal end of a radius that interacts with carpals." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "distal articular surface of radius" EXACT [] is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone @@ -398122,6 +422212,8 @@ relationship: part_of UBERON:0004407 ! distal epiphysis of radius id: UBERON:7500081 name: articular surface for the tibia on the talus def: "Contact surface between the tibia and the talus located on the talus." [https://en.wikipedia.org/wiki/Talus_bone] +subset: human_subset +subset: mouse_subset is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398131,6 +422223,8 @@ relationship: part_of UBERON:0002395 ! talus id: UBERON:7500083 name: greater palatine foramen def: "A foramen of the skull found at either posterior angle of the hard palate, for the transmission of the descending palatine vessels and greater palatine nerve." [FMA:53173, https://orcid.org/0000-0002-2825-0621, WikipediaVersioned:Greater_palatine_foramen&oldid=971687677] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398140,6 +422234,8 @@ relationship: part_of UBERON:0001682 ! palatine bone id: UBERON:7500084 name: lesser palatine foramen def: "A foramen of the skull found at either posterior angle of the hard palate behind the greater palatine foramen. One or more lesser palatine foramina perforate the pyramidal process of the palatine bone and carry the lesser palatine nerve." [FMA:53167, https://orcid.org/0000-0002-2825-0621, WikipediaVersioned:Lesser_palatine_foramina&oldid=870872639] +subset: human_subset +subset: mouse_subset is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398149,6 +422245,8 @@ relationship: part_of UBERON:0001682 ! palatine bone id: UBERON:7500085 name: endodontium def: "A pulp-dentin complex or endodont that is part of a calcareous tooth." [https://en.wikipedia.org/wiki/Pulp_(tooth)] {comment="PMID: 29345716"} +subset: human_subset +subset: mouse_subset synonym: "endodont" EXACT [] synonym: "pulp-dentin complex" EXACT [] is_a: UBERON:0010365 ! odontoid tissue @@ -398169,6 +422267,8 @@ replaced_by: UBERON:7500080 id: UBERON:7500089 name: posterior articular facet for talus of calcaneus def: "Posterior-most facet on the proximal surface of the calcaneus for the articulation of the talus bone." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "proximal facet of calcaneum" EXACT [] is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet @@ -398179,6 +422279,8 @@ relationship: part_of UBERON:0001450 ! calcaneus id: UBERON:7500091 name: middle articular facet for talus of calcaneus def: "Middle facet on the proximal surface of the calcaneus for the articulation of the talus bone." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398188,6 +422290,8 @@ relationship: part_of UBERON:0001450 ! calcaneus id: UBERON:7500092 name: anterior articular facet for talus of calcaneus def: "Anterior-most facet on the proximal surface of the calcaneus for the articulation of the talus bone." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "distal facet of calcaneum" EXACT [] is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet @@ -398198,6 +422302,8 @@ relationship: part_of UBERON:0001450 ! calcaneus id: UBERON:7500093 name: calcaneal body def: "The calcaneus body is the part of the bone not used for articulation with other bones." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "corpus calcanei" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ @@ -398208,6 +422314,8 @@ relationship: part_of UBERON:0001450 ! calcaneus id: UBERON:7500094 name: tubercle of calcaneus def: "A raised projection on the calcaneus." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "calcaneal tubercle" EXACT [] synonym: "calcaneal tuberosity" EXACT [] synonym: "tuberosity of calcaneus" EXACT [] @@ -398223,6 +422331,8 @@ relationship: part_of UBERON:0001450 ! calcaneus id: UBERON:7500095 name: lateral tubercle of calcaneus def: "A raised projection on the lateral side of a calcaneus." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "lateral tuberosity of calcaneus" EXACT [] is_a: UBERON:7500094 ! tubercle of calcaneus relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398231,6 +422341,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 id: UBERON:7500096 name: medial tubercle of calcaneus def: "A raised projection on the medial side of a calcaneus." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "medial tuberosity of calcaneus" EXACT [] is_a: UBERON:7500094 ! tubercle of calcaneus relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398239,6 +422351,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 id: UBERON:7500101 name: antorbital notch def: "The antorbital notch is a prominence of bone located anterolaterally of the antorbital fenestra." [doi:10.5479/si.00810282.627] +subset: human_subset +subset: mouse_subset is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0003129 ! skull @@ -398249,6 +422363,8 @@ relationship: present_in_taxon NCBITaxon:9788 ! Equidae id: UBERON:7500102 name: preorbital bone region def: "Part of the orbital plate formed by the jugal (part of the zygomatic), lacrimal (which is sometimes fused), sometimes nasal (typically in species with elongated rostra), and maxilla bones anterior to the orbit." [https://doi.org/10.1111/let.12011] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001062 ! anatomical entity relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: part_of UBERON:0001697 ! orbit of skull @@ -398257,6 +422373,8 @@ relationship: part_of UBERON:0001697 ! orbit of skull id: UBERON:7500103 name: preorbital fossa def: "A hollow (fossa) in the preorbital region, typically lying on the maxillary bone, although sometimes can touch nasal bones (e.g., modern Equus)." [http://hdl.handle.net/2246/997, ISSN:0001-0196] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004704 ! bone fossa intersection_of: UBERON:0004704 ! bone fossa intersection_of: part_of UBERON:7500102 ! preorbital bone region @@ -398268,6 +422386,8 @@ relationship: part_of UBERON:7500102 ! preorbital bone region id: UBERON:7500105 name: coracoid process of calcaneus def: "At the dorsal part of the base of the calcaneal tuberoisty is a pointed process called the coracoid process." [https://link.springer.com/article/10.1007/s00276-003-0220-0, https://www.imaios.com/en/vet-Anatomy/Vet-Anatomical-Part/Coracoid-process2] +subset: human_subset +subset: mouse_subset synonym: "processus coracoideus of calcaneus" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ @@ -398278,6 +422398,8 @@ relationship: part_of UBERON:7500094 ! tubercle of calcaneus id: UBERON:7500106 name: hormion def: "A craniometric point at the junction of the posterior midline border of the vomer with the sphenoid bone on the sphenovomerine suture." [https://locatelambda.org/manual, https://medical-dictionary.thefreedictionary.com/hormion, ISBN:9780873659505] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398288,6 +422410,8 @@ property_value: depiction "http://locatelambda.org/wp-content/uploads/2018/02/ho id: UBERON:7500107 name: sphenovomerine suture def: "A suture joining a sphenoid bone with the alae of a vomer to form a schindylesis type of joint." [DOI:10.1097/SCS.0000000000002945, PMID:27483100] +subset: human_subset +subset: mouse_subset is_a: UBERON:0009199 ! facial suture intersection_of: UBERON:0009199 ! facial suture intersection_of: connects UBERON:0001677 ! sphenoid bone @@ -398301,6 +422425,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 id: UBERON:7500108 name: cheek tooth def: "Any of the post-canine teeth, which are the multicuspidate molars or premolars used for shearing and grinding food in mammals." [Wikipedia:Cheek_teeth] +subset: human_subset +subset: mouse_subset synonym: "cheek teeth" RELATED OMO:0003004 [] synonym: "cheekteeth" RELATED OMO:0003004 [] synonym: "cheektooth" EXACT [] @@ -398312,6 +422438,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 id: UBERON:7500109 name: basion def: "An anatomical point on the antero-ventral margin of foramen magnum in the median plane." [ISBN:9780873659505] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398321,6 +422449,8 @@ relationship: part_of UBERON:0003687 ! foramen magnum id: UBERON:7500110 name: synsphenion def: "A craniometric point on the ventral surface of the intersphenoid suture, along the midline of the skull." [ISBN:9780873659505] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:7500111 ! intersphenoid suture @@ -398329,6 +422459,8 @@ relationship: part_of UBERON:7500111 ! intersphenoid suture id: UBERON:7500111 name: intersphenoid suture def: "A suture joining the basisphenoid bone and the presphenoid bone of a sphenoid bone." [ISBN:9780873659505] +subset: human_subset +subset: mouse_subset synonym: "intersphenoidal synchondrosis" EXACT [DOI:10.1038/s41598-022-04783-1] is_a: UBERON:0009199 ! facial suture intersection_of: UBERON:0009199 ! facial suture @@ -398344,6 +422476,8 @@ id: UBERON:7500112 name: prosthion def: "A craniometric point that is the most anterior point in the midline on the alveolar process of the maxilla between the incisors (premaxilla bone)." [DOI:10.1002/ar.a.10052, ISBN:97808736590505] comment: Often this point is midway between the median upper incisor teeth. In ruminants and pigs this point is projected into space. +subset: human_subset +subset: mouse_subset synonym: "alveolar point" EXACT [https://www.vocabulary.com/dictionary/alveolar%20point] synonym: "prostheon" EXACT [https://medical-dictionary.thefreedictionary.com/prostheon] is_a: UBERON:0006983 ! anatomical point @@ -398354,6 +422488,8 @@ relationship: part_of UBERON:0002244 ! premaxilla id: UBERON:7500113 name: akrokranion def: "The most dorsoanterior point on the supraoccipital crest in the medial plane." [ISBN:9780873659505] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:2001783 ! supraoccipital crest @@ -398362,6 +422498,8 @@ relationship: part_of UBERON:2001783 ! supraoccipital crest id: UBERON:7500114 name: cheek tooth row def: "An anatomical row consisting of adjacent cheek teeth." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "cheektooth row" EXACT [https://orcid.org/0000-0003-2699-3066] is_a: UBERON:0009678 ! tooth row intersection_of: UBERON:0034926 ! anatomical row @@ -398374,6 +422512,8 @@ relationship: has_member UBERON:7500108 ! cheek tooth id: UBERON:7500115 name: sagittal crest def: "A ridge or similar projection rising above the surface of an anatomical strucuture along the sagittal (midline) plane." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "sagittal ridge" EXACT [] is_a: UBERON:4200133 ! crest relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398383,6 +422523,8 @@ id: UBERON:7500117 name: opisthocranion def: "A craniometric point which is the furthest point from the glabella along the midline." [https://locatelambda.org/manual/, ISBN:9780873659505, Wiktionary:opisthocranion] comment: In pigs this point is projected into space as a point between a line connecting the aboral points of the right and left superior nuchal lines. {xref="ISBN:9780873659505"} +subset: human_subset +subset: mouse_subset synonym: "opisthokranion" EXACT [ISBN:9780873659505] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398391,6 +422533,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 id: UBERON:7500118 name: opisthion def: "A craniometric point at the posterior margin of the foramen magnum along the midline." [https://locatelambda.org/manual/, ISBN:9780873659505] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0003687 ! foramen magnum @@ -398400,6 +422544,8 @@ property_value: depiction "http://locatelambda.org/wp-content/uploads/2018/02/op id: UBERON:7500119 name: ectorbitale def: "An anatomical point on the most lateral point of the frontal bone of tetrapods on the occipital side of the orbit." [ISBN:9004086161, ISBN:9789004086166] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398409,6 +422555,8 @@ relationship: part_of UBERON:0000209 ! tetrapod frontal bone id: UBERON:7500120 name: zygion def: "The most lateral anatomical point of the zygomatic arch." [ISBN:9004086161\,9789004086166] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398419,6 +422567,8 @@ id: UBERON:7500121 name: paroccipital process def: "A process of bone extending downward from the jugular process of the occipital bone." [https://medical-dictionary.thefreedictionary.com/paroccipital+process] comment: This process occurs in 0.5-2.0% of the human population. {xref="DOI:10.1016/j.wneu.2018.06.056"} +subset: human_subset +subset: mouse_subset synonym: "estiloid process" EXACT [DOI:10.1016/j.wneu.2018.06.056] synonym: "paracondylar" EXACT [DOI:10.1016/j.wneu.2018.06.056] synonym: "parajugular" EXACT [DOI:10.1016/j.wneu.2018.06.056] @@ -398433,6 +422583,8 @@ relationship: part_of UBERON:0001676 ! occipital bone id: UBERON:7500123 name: incisor tooth 3 def: "The incisor tooth of the upper or lower jaw that is phylogenetically number 3." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "third incisor tooth" EXACT [] is_a: UBERON:0001098 ! incisor tooth relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398441,6 +422593,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 id: UBERON:7500124 name: incisor tooth 4 def: "The incisor tooth of the upper or lower jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "fourth incisor tooth" EXACT [] is_a: UBERON:0001098 ! incisor tooth relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398449,6 +422603,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 id: UBERON:7500125 name: incisor tooth 5 def: "The incisor tooth of the upper or lower jaw that is phylogenetically number 5." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "fifth incisor tooth" EXACT [] is_a: UBERON:0001098 ! incisor tooth relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398457,6 +422613,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 id: UBERON:7500126 name: molar tooth 5 def: "The molar tooth of the upper or lower jaw that is phylogenetically number 5." [https://orcid.org/0000-0003-2699-3066] +subset: human_subset +subset: mouse_subset synonym: "fifth molar tooth" EXACT [] is_a: UBERON:0003655 ! molar tooth relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398465,6 +422623,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 id: UBERON:7500127 name: otion def: "The most lateral anatomical point on the mastoid process of temporal bone." [http://desinfos.eu/archeozoologie.desinfos.eu/PERSO/Aides%20determination/Osteometrie/Von%20Den%20Driesch\,%201976\,%20A%20guide%20to%20the%20measurement%20of%20animal%20bones%20from%20archaeological%20sites.pdf, ISBN:9780873659505] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -398476,6 +422636,8 @@ property_value: depiction "Ot in Fig. 1 of https://www.researchgate.net/profile/ id: UBERON:7500128 name: cranial temporal crest def: "A ridge or similar projection connected to the temporal lines and nuchal crest on the squamous part of the occipital bone. It bounds the posteroventral part of the temporal fossa." [https://www.researchgate.net/publication/325258124_Morphological_Study_on_the_Skull_of_Wild_Boar_of_Mizoram_Sus_scrofa] +subset: human_subset +subset: mouse_subset synonym: "temporal crest" RELATED [DOI:10.1016/j.asj.2009.01.011] is_a: UBERON:4100000 ! skeletal element projection is_a: UBERON:4200133 ! crest @@ -398522,6 +422684,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 id: UBERON:8000004 name: central retina def: "Region of retina around the fovea that extends approximately for 6 mm. Central retina is considerably thick due to increased density of photoreceptors, particularly cones and their associated bipolar and ganglion cells." [https://webvision.med.utah.edu/book/part-i-foundations/simple-anatomy-of-the-retina/] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0004121 ! ectoderm-derived structure relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 @@ -398531,6 +422695,8 @@ relationship: part_of UBERON:0000966 ! retina id: UBERON:8000005 name: Henle's fiber layer def: "This layer contains bundles of unmyelinated cone and rod photoreceptor axons terminating in the pedicles and spherules that synapse in the retinal outer plexiform layer (OPL)." [PMID:21071737] +subset: human_subset +subset: mouse_subset synonym: "Henle fiber layer" EXACT [] synonym: "HFL" EXACT [] synonym: "nerve fiber layer of Henle" EXACT [] @@ -398543,6 +422709,8 @@ relationship: part_of UBERON:0000966 ! retina id: UBERON:8000006 name: left side of back def: "Left part of the organism dorsal to a horizontal plane and bounded on one side by the same transverse plane." [https://microbiomedb.org/] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001137 ! dorsum is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0001137 ! dorsum @@ -398554,6 +422722,8 @@ relationship: in_left_side_of UBERON:0000468 ! multicellular organism id: UBERON:8000007 name: right side of back def: "Right part of the organism dorsal to a horizontal plane and bounded on one side by the same transverse plane." [https://microbiomedb.org/] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001137 ! dorsum is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0001137 ! dorsum @@ -398565,6 +422735,8 @@ relationship: in_right_side_of UBERON:0000468 ! multicellular organism id: UBERON:8000008 name: cementocyte lacuna def: "The small cavity within the cellular cementum that is occupied by a cementocyte cell body." [MP:0030555, PMID:27029548] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002553 ! anatomical cavity relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 relationship: part_of UBERON:0001753 ! cementum @@ -398573,6 +422745,8 @@ relationship: part_of UBERON:0001753 ! cementum id: UBERON:8000009 name: Purkinje fiber network def: "A collection of Purkinje fibers that receives signals from the right and left bundle branches and innervates the ventricular cardiac muscle. The Purkinje fiber network creates synchronized contractions of the heart ventricles." [PMID:26786210] +subset: human_subset +subset: mouse_subset synonym: "Purkinje fibre network" EXACT [PMID:26786210] is_a: UBERON:0010131 {source="https://github.com/obophenotype/uberon/issues/1785", source="https://orcid.org/0000-0001-5208-3432", source="https://orcid.org/0000-0002-9791-0064"} ! conducting tissue of heart is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle @@ -398654,6 +422828,8 @@ property_value: dcterms-date "2021-07-26T15:48:54Z" xsd:dateTime id: UBERON:8300000 name: skin of scalp def: "A zone of skin that is part of a scalp." [http://www.ncbi.nlm.nih.gov/books/NBK551565/] +subset: human_subset +subset: mouse_subset synonym: "adult scalp zone of skin" EXACT [] synonym: "scalp skin" EXACT [] synonym: "scalp zone of skin" EXACT [] @@ -398670,6 +422846,8 @@ relationship: part_of UBERON:0000403 ! scalp id: UBERON:8300001 name: right forelimb def: "A forelimb that is on the right side of a pectoral complex." [UBERONREF:0000003] +subset: human_subset +subset: mouse_subset xref: FMA:7185 is_a: UBERON:0002102 ! forelimb is_a: UBERON:0015212 ! lateral structure @@ -398683,6 +422861,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:8300002 name: left forelimb def: "A forelimb that is on the left side of a pectoral complex." [UBERONREF:0000003] +subset: human_subset +subset: mouse_subset xref: FMA:7186 is_a: UBERON:0002102 ! forelimb is_a: UBERON:0015212 ! lateral structure @@ -398696,6 +422876,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:8300003 name: right hindlimb def: "A hindlimb that is on the right side of a pelvic complex." [UBERONREF:0000003] +subset: human_subset +subset: mouse_subset xref: FMA:7187 is_a: UBERON:0002103 ! hindlimb is_a: UBERON:0015212 ! lateral structure @@ -398709,6 +422891,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:8300004 name: left hindlimb def: "A hindlimb that is on the left side of a pelvic complex." [UBERONREF:0000003] +subset: human_subset +subset: mouse_subset xref: FMA:7188 is_a: UBERON:0002103 ! hindlimb is_a: UBERON:0015212 ! lateral structure @@ -398722,6 +422906,8 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:8400001 name: hepatic acinus zone 1 def: "The region of the hepatic acinus that is closest to the arterial blood supply and has the highest oxygen concentration. Zone 1 is located in the periportal region of the liver lobule, closest to the portal triad. Hepatocytes in this region are primarily involved in oxidative energy metabolism." [PMID:29763190] +subset: human_subset +subset: mouse_subset synonym: "hepatic acinus periportal zone" EXACT [PMID:28126520] is_a: UBERON:8400005 ! metabolic zone of liver relationship: dc-contributor https://orcid.org/0000-0003-2034-601X @@ -398734,6 +422920,8 @@ creation_date: 2020-09-08T14:14:21Z id: UBERON:8400002 name: hepatic acinus zone 3 def: "The region of the hepatic acinus immediately surrounding the central veins. This region has the lowest oxygen concentration in the acinus. Zone 3 is located in the centrilobular region of the liver lobule, closest to the central vein. Hepatocytes in this region are the primary location for the biotransformation of drugs." [PMID:29763190] +subset: human_subset +subset: mouse_subset synonym: "hepatic acinus centrilobular zone" EXACT [PMID:28126520] synonym: "hepatic acinus pericentral zone" EXACT [PMID:28126520] synonym: "hepatic acinus perivenous zone" EXACT [PMID:28126520] @@ -398748,6 +422936,8 @@ creation_date: 2020-09-08T15:05:03Z id: UBERON:8400003 name: hepatic acinus zone 2 def: "The region of the hepatic acinus in between zones 1 and 3. Blood in this region has an intermediate oxygen concentration relative to the other two zones of the hepatic acinus. Zone 2 is located in the midzonal region of the liver lobule. Hepatocytes in this region have mixed functionality in comparison with those in zones 1 and 3." [PMID:29763190] +subset: human_subset +subset: mouse_subset synonym: "hepatic acinus intermediary zone" EXACT [PMID:28126520] is_a: UBERON:8400005 ! metabolic zone of liver relationship: adjacent_to UBERON:8400001 ! hepatic acinus zone 1 @@ -398762,6 +422952,8 @@ creation_date: 2020-09-08T15:15:57Z id: UBERON:8400005 name: metabolic zone of liver def: "Any of the metabolic zones found in the liver. Liver tissue is heterogenous at the level of morphometry and histochemistry. This heterogeneity is linked to the position of a cell within the functional unit of the tissue, which, in turn, is related to the blood supply: cells located in the upstream zone differ from those in the downstream zone with respect to subcellular structures, key enzymes, translocators, and receptors and, therefore, have different metabolic capacities. This is the basis for 'metabolic zonation', a concept first proposed in mammals for carbohydrate metabolism and later expanded to include amino acid and ammonia metabolism, xenobiotic metabolism, protective metabolism, and formation of plasma proteins." [DOI:10.1016/S0968-0004(78)91764-4, PMID:8839925] +subset: human_subset +subset: mouse_subset synonym: "hepatic acinus metabolic zone" EXACT [PMID:8839925] is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0004119 ! endoderm-derived structure @@ -398774,6 +422966,8 @@ creation_date: 2020-09-29T15:45:36Z id: UBERON:8400006 name: liver lobule periportal region def: "The region of the liver lobule that is closest to the portal triad. The functionally-defined hepatic acinus zone 1 is generally found in this region." [PMID:28126520] +subset: human_subset +subset: mouse_subset synonym: "hepatic acinus zone 1" RELATED [PMID:28126520] is_a: UBERON:8400005 ! metabolic zone of liver relationship: adjacent_to UBERON:0001279 ! portal triad @@ -398787,6 +422981,8 @@ creation_date: 2020-10-05T12:56:57Z id: UBERON:8400007 name: liver lobule centrilobular region def: "The region of the liver lobule that is closest to the central vein. The functionally-defined hepatic acinus zone 3 is generally found in this region." [PMID:28126520] +subset: human_subset +subset: mouse_subset synonym: "hepatic acinus zone 3" RELATED [PMID:28126520] is_a: UBERON:8400005 ! metabolic zone of liver relationship: adjacent_to UBERON:0006841 ! central vein of liver @@ -398800,6 +422996,8 @@ creation_date: 2020-10-05T15:43:18Z id: UBERON:8400008 name: liver lobule midzonal region def: "The region of the liver lobule that is between the periportal and centrilobular regions. The functionally-defined hepatic acinus zone 2 is generally found in this region." [PMID:28126520] +subset: human_subset +subset: mouse_subset synonym: "hepatic acinus zone 2" RELATED [PMID:28126520] is_a: UBERON:8400005 ! metabolic zone of liver relationship: adjacent_to UBERON:0001279 ! portal triad @@ -398814,6 +423012,8 @@ creation_date: 2020-10-05T15:52:22Z id: UBERON:8400021 name: liver serosa def: "Hepatic serous coat; peritoneal covering of the liver, enclosing almost all except for a triangular area on its posterior surface (the 'bare area of the liver') and a smaller area where the liver and gallbladder are in direct contact." [https://medical-dictionary.thefreedictionary.com/serosa+of+liver, https://orcid.org/0000-0002-0449-2730] +subset: human_subset +subset: mouse_subset synonym: "serosa of liver" EXACT [FMA:15811] synonym: "tunica serosa hepatis" EXACT OMO:0003011 [https://medical-dictionary.thefreedictionary.com/serosa+of+liver] is_a: UBERON:0000042 ! serous membrane @@ -398827,6 +423027,8 @@ relationship: part_of UBERON:0002107 ! liver id: UBERON:8400023 name: liver subserosa def: "Subserosal tissue of liver. A zone of areolar connective tissue lying beneath the serous coat of the liver and distinguished with difficulty from the fibrous capsule of Glisson." [FMA:15812, https://medical-dictionary.thefreedictionary.com/subserosa+of+liver, https://orcid.org/0000-0002-0449-2730] +subset: human_subset +subset: mouse_subset synonym: "hepatic subserosa" EXACT [] synonym: "subserosal tissue of liver" EXACT [] synonym: "subserous layer of liver" EXACT [] @@ -398843,6 +423045,8 @@ relationship: part_of UBERON:0002107 ! liver id: UBERON:8400024 name: subcapsular region of liver def: "Region of liver parenchyma immediately below the capsule. This region is frequently specified in pathology diagnoses." [https://orcid.org/0000-0002-0449-2730, PMID:30992875] +subset: human_subset +subset: mouse_subset synonym: "liver subcapsular region" EXACT [PMID:30992875] synonym: "liver subcapsular tissue" EXACT [PMID:30992875] synonym: "subcapsular tissue of liver" EXACT [PMID:30992875] @@ -398859,6 +423063,8 @@ id: UBERON:8410000 name: duodeno-jejunal junction def: "The anatomical junction between the duodenum and the jejunum." [PMID:23961897, PMID:29064554] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "duodeno-jejunal flexure" EXACT [] synonym: "duodenojejunal flexure" EXACT [] synonym: "duodenojejunal junction" EXACT [] @@ -398880,7 +423086,9 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:8410001 name: small intestine venule def: "Venule of villus of small intestine." [https://orcid.org/0000-0003-4183-8865] +subset: human_subset subset: location_grouping +subset: mouse_subset synonym: "venule of small intestine" EXACT [] is_a: UBERON:0001979 ! venule intersection_of: UBERON:0001979 ! venule @@ -398892,7 +423100,9 @@ relationship: part_of UBERON:0001213 ! intestinal villus id: UBERON:8410002 name: small intestine lymphatic vessel def: "A lymphatic vessel that supplies the small intestine." [http://orcid.org/0000-0003-4183-8865] +subset: human_subset subset: location_grouping +subset: mouse_subset synonym: "lymphatic vessel of small intestine" EXACT [] is_a: UBERON:0001473 ! lymphatic vessel intersection_of: UBERON:0001473 ! lymphatic vessel @@ -398905,6 +423115,8 @@ id: UBERON:8410003 name: ductal plate def: "In human, ductal plate is a double-layered cylindrical structure of bile duct epithelium that surrounds the portal ramifications by the eighth gestational week. After approximately the 12th gestational week, remodelling of ductal plate begins, and maturity is attained by the end of gestation or early postnatal period." [http://orcid.org/0000-0002-7073-9172, PMID:28515578] subset: added_for_HCA +subset: human_subset +subset: mouse_subset is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 @@ -398920,7 +423132,9 @@ property_value: taxon_notes "Temporal stages still need to be fully researched a id: UBERON:8410004 name: small intestine arteriole def: "Arteriole of villus of small intestine." [http://orcid.org/0000-0003-4183-8865] +subset: human_subset subset: location_grouping +subset: mouse_subset synonym: "arteriole of small intestine" EXACT [] synonym: "arteriole of villus of small intestine" EXACT [] synonym: "small intestine villus arteriole" EXACT [] @@ -398935,6 +423149,8 @@ id: UBERON:8410005 name: transitional glandular epithelium of anorectum def: "Glandular epithelium of the anal transition zone. The anal transition zone is defined loosely as the tissue interposed between the uninterrupted squamous epithelium of the anoderm and the uninterrupted mucosal epithelium of the anal canal in the anorectum." [http://orcid.org/0000-0003-3440-1876, PMID:8425694] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "anorectum transitional glandular epithelium" EXACT [] synonym: "glandular epithelium of anal transition zone" EXACT [] synonym: "glandular epithelium of the anal transition zone" EXACT [] @@ -398947,6 +423163,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:8410006 name: submucous nerve plexus of anorectum def: "Submucous nerve plexus that is located in the anorectum." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "anorectum submucous nerve plexus" EXACT [] is_a: UBERON:0005304 ! submucous nerve plexus intersection_of: UBERON:0005304 ! submucous nerve plexus @@ -398958,6 +423176,8 @@ relationship: part_of UBERON:8410050 ! anorectum id: UBERON:8410007 name: myenteric nerve plexus of anorectum def: "Myenteric nerve plexus that is located in the anorectum." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "anorectum myenteric nerve plexus" EXACT [] is_a: UBERON:0002439 ! myenteric nerve plexus intersection_of: UBERON:0002439 ! myenteric nerve plexus @@ -398969,6 +423189,8 @@ relationship: part_of UBERON:8410050 ! anorectum id: UBERON:8410008 name: venule of anorectum def: "A venule that is located in the anorectum." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "anorectum venule" EXACT [] is_a: UBERON:0001979 ! venule intersection_of: UBERON:0001979 ! venule @@ -398980,6 +423202,8 @@ relationship: part_of UBERON:8410050 ! anorectum id: UBERON:8410009 name: arteriole of anorectum def: "An arteriole that is located in the anorectum." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "anorectum arteriole" EXACT [] is_a: UBERON:0001980 ! arteriole intersection_of: UBERON:0001980 ! arteriole @@ -398993,6 +423217,8 @@ name: fimbria of fallopian tube def: "A fringe of tissue around the ostium of the fallopian tube, in the direction of the ovary." [WikipediaVersioned:Fallopian_tube&oldid=998395727] subset: added_for_HCA subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "fimbria of uterine tube" EXACT [] synonym: "fimbriae of fallopian tube" EXACT OMO:0003004 [] synonym: "fimbriae of uterine tube" EXACT OMO:0003004 [] @@ -399009,6 +423235,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:8410011 name: myenteric nerve plexus of appendix def: "Myenteric nerve plexus that is located in the vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "myenteric nerve plexus of appendix vermiformis" EXACT [] synonym: "myenteric nerve plexus of vermiform appendix" EXACT [] is_a: UBERON:0002439 ! myenteric nerve plexus @@ -399021,6 +423249,8 @@ relationship: part_of UBERON:0001154 ! vermiform appendix id: UBERON:8410012 name: submucous nerve plexus of appendix def: "Submucous nerve plexus that is located in the vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "submucous nerve plexus of appendix vermiformis" EXACT [] synonym: "submucous nerve plexus of vermiform appendix" EXACT [] is_a: UBERON:0005304 ! submucous nerve plexus @@ -399033,6 +423263,8 @@ relationship: part_of UBERON:0001154 ! vermiform appendix id: UBERON:8410013 name: afferent lymphatic vessel valve def: "A valve in an afferent lymphatic vessel. It manages the flow of lymphatic fluid into the lymph node carrying immune cells and is essential for the correct flow of fluid through the lymphatic system." [http://orcid.org/0000-0003-4183-8865] +subset: human_subset +subset: mouse_subset synonym: "valve of afferent lymphatic vessel" EXACT [] is_a: UBERON:0034949 ! lymphatic valve intersection_of: UBERON:0034949 ! lymphatic valve @@ -399044,6 +423276,8 @@ relationship: part_of UBERON:0010396 ! afferent lymphatic vessel id: UBERON:8410014 name: efferent lymphatic vessel valve def: "A valve in an efferent lymphatic vessel. It manages the flow of lymphatic fluid out of the lymph node carrying immune cells and is essential for the correct flow of fluid through the lymphatic system." [http://orcid.org/0000-0003-4183-8865] +subset: human_subset +subset: mouse_subset synonym: "valve of efferent lymphatic vessel" EXACT [] is_a: UBERON:0034949 ! lymphatic valve intersection_of: UBERON:0034949 ! lymphatic valve @@ -399055,6 +423289,8 @@ relationship: part_of UBERON:0010397 ! efferent lymphatic vessel id: UBERON:8410015 name: arteriole of colon def: "An arteriole located in the colon." [http://orcid.org/0000-0003-3440-1876, http://orcid.org/0000-0003-4183-8865] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001980 ! arteriole intersection_of: UBERON:0001980 ! arteriole intersection_of: part_of UBERON:0001155 ! colon @@ -399065,6 +423301,8 @@ relationship: part_of UBERON:0001155 ! colon id: UBERON:8410016 name: descending sigmoid junction def: "The anatomical junction between the descending colon and the sigmoid colon." [https://orcid.org/0000-0003-4183-8865, PMID:27233374] +subset: human_subset +subset: mouse_subset synonym: "descending-sigmoid colon junction" EXACT [] synonym: "descending-sigmoid junction" EXACT [] synonym: "sigmoid junction" BROAD [] @@ -399082,6 +423320,8 @@ id: UBERON:8410017 name: left colic vein def: "A portal vein that drains the descending colon. It is a tributary of the inferior mesenteric vein, and follows the path of its corresponding artery, the left colic artery." [https://orcid.org/0000-0003-4183-8865, WikipediaVersioned:Left_colic_vein&oldid=964575339] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:15394 is_a: UBERON:0002017 ! portal vein intersection_of: UBERON:0002017 ! portal vein @@ -399098,6 +423338,8 @@ id: UBERON:8410018 name: right colic vein def: "A portal vein that drains the ascending colon. It is a tributary of the superior mesenteric vein, and travels with its corresponding artery, the right colic artery." [https://orcid.org/0000-0003-4183-8865, WikipediaVersioned:Right_colic_vein&oldid=870898828] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:15407 is_a: UBERON:0002017 ! portal vein intersection_of: UBERON:0002017 ! portal vein @@ -399113,6 +423355,8 @@ relationship: tributary_of UBERON:0001138 ! superior mesenteric vein id: UBERON:8410019 name: jejuno-ileal junction def: "The area where the jejunum ends and the ileum part of the intestine begins. Although there is no clear distinct section, the ileum is narrower and has smaller villi than the jejunum." [DOI:10.1016/B978-1-4377-2206-2.00068-3, https://orcid.org/0000-0003-4183-8865, PMID:21802415] +subset: human_subset +subset: mouse_subset synonym: "jejunoileal junction" EXACT [] is_a: UBERON:8410024 ! intestinal junction intersection_of: UBERON:0007651 ! anatomical junction @@ -399127,6 +423371,8 @@ relationship: part_of UBERON:0002108 ! small intestine id: UBERON:8410020 name: venule of appendix def: "A venule located in the vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "venule of vermiform appendix" EXACT [] synonym: "vermiform appendix venule" EXACT [] is_a: UBERON:0001979 ! venule @@ -399140,6 +423386,8 @@ id: UBERON:8410021 name: inguinal region skin def: "The skin covering the inguinal region between the abdomen and the thigh on either side of the pubic bone." [http://orcid.org/0000-0001-7505-5418, PMID:32327715, PMID:468709, WikipediaVersioned:Groin&oldid=998393002] subset: added_for_HCA +subset: human_subset +subset: mouse_subset synonym: "groin skin" EXACT [] synonym: "inguinal skin" EXACT [] synonym: "skin of groin" EXACT [] @@ -399156,6 +423404,8 @@ id: UBERON:8410022 name: left colic artery def: "The first branch of the inferior mesenteric artery (IMA) is the left colic artery. The left colic artery supplies blood flow to the distal third of the transverse colon and the entirety of the descending colon. Once diverging from the IMA, the left colic artery runs anterior to the left ureter, left internal spermatic vessels (males), and psoas major before branching into its ascending and descending segments." [https://orcid.org/0000-0003-4183-8865, PMID:29489246] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:14826 is_a: UBERON:0001637 ! artery relationship: connected_to UBERON:0001215 ! inferior mesenteric vein @@ -399171,6 +423421,8 @@ id: UBERON:8410023 name: right colic artery def: "The right colic artery may arise directly from the superior mesenteric artery (SMA) but often arises from a common trunk with the ileocolic artery or middle colic artery. It supplies the ascending colon." [https://orcid.org/0000-0003-4183-8865, ISBN:9780443103735] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:14811 is_a: UBERON:0001637 ! artery relationship: connected_to UBERON:0001182 ! superior mesenteric artery @@ -399182,6 +423434,8 @@ relationship: supplies UBERON:0001156 ! ascending colon id: UBERON:8410024 name: intestinal junction def: "An anatomical junction between two parts of the intestine." [https://orcid.org/0000-0002-7073-9172] +subset: human_subset +subset: mouse_subset synonym: "junction of intestine" EXACT [] is_a: UBERON:1100000 ! digestive tract junction intersection_of: UBERON:0007651 ! anatomical junction @@ -399196,6 +423450,8 @@ id: UBERON:8410025 name: transition zone of prostate def: "The region of the prostate gland anterior to the central and peripheral zones, surrounding the proximal urethra. It is the zone of the human prostate gland that grows the most throughout life, and is responsible for benign prostatic hypertrophy." [https://orcid.org/0000-0002-7431-4139, PMID:30566875] subset: added_for_HCA +subset: human_subset +subset: mouse_subset synonym: "prostate transition zone" EXACT [] synonym: "transition zone of human prostate" NARROW [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure @@ -399211,6 +423467,8 @@ id: UBERON:8410026 name: peripheral zone of prostate def: "The region of the prostate that is located posterior to the central and transition zones, surrounding the distal urethra. It is the zone of origin for the vast majority of human prostatic cancers." [https://orcid.org/0000-0002-7431-4139, PMID:30566875] subset: added_for_HCA +subset: human_subset +subset: mouse_subset synonym: "peripheral zone of human prostate" NARROW [] synonym: "prostate peripheral zone" EXACT [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure @@ -399226,6 +423484,8 @@ id: UBERON:8410027 name: central zone of prostate def: "The region of the prostate gland that is located between the peripheral and transition zones, surrounding the ejaculatory ducts. It gives rise to a very small percentage of human prostate cancers, often aggressive and invading the seminal vesicles." [https://orcid.org/0000-0002-7431-4139, PMID:30566875] subset: added_for_HCA +subset: human_subset +subset: mouse_subset synonym: "central zone of human prostate" NARROW [] synonym: "prostate central zone" EXACT [] is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure @@ -399239,6 +423499,8 @@ property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/p id: UBERON:8410028 name: arteriole of appendix def: "An arteriole located in the vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "appendix vermiformis arteriole" EXACT [] synonym: "arteriole of appendix vermiformis" EXACT [] synonym: "arteriole of vermiform appendix" EXACT [] @@ -399253,6 +423515,8 @@ relationship: part_of UBERON:0001154 ! vermiform appendix id: UBERON:8410029 name: lymphatic capillary of appendix def: "A lymphatic capillary that is located in the vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "lymphatic capillary of appendix vermiformis" EXACT [] synonym: "lymphatic capillary of vermiform appendix" EXACT [] is_a: UBERON:0006842 ! lymphatic capillary @@ -399266,6 +423530,8 @@ relationship: part_of UBERON:0001154 ! vermiform appendix id: UBERON:8410030 name: lymphatic vessel of appendix def: "A lymphatic vessel located in the vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "lymphatic vessel of appendix vermiformis" EXACT [] synonym: "lymphatic vessel of vermiform appendix" EXACT [] is_a: UBERON:0001473 ! lymphatic vessel @@ -399278,6 +423544,8 @@ relationship: part_of UBERON:0001154 ! vermiform appendix id: UBERON:8410031 name: muscularis mucosae of appendix def: "A muscularis mucosa that is part of a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "muscularis mucosae of appendix vermiformis" EXACT [] synonym: "muscularis mucosae of vermiform appendix" EXACT [] is_a: UBERON:0001239 ! muscularis mucosae of large intestine @@ -399291,6 +423559,8 @@ id: UBERON:8410032 name: trabecular sinus of lymph node def: "The trabecular sinus is the lymph-filled space outside the trabeculae between lobules of the lymph node. This is a continuation of the subcapsular sinus which receives the afferent vessels and is present beneath the capsule. This space is traversed by both reticular fibers and cells in the lymph." [http://orcid.org/0000-0003-4183-8865, PMID:32491649, WikipediaVersioned:Lymph_node&oldid=1020495758] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lymph node trabecular sinus" EXACT [] is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space @@ -399306,6 +423576,8 @@ id: UBERON:8410033 name: lymph node vein def: "A vein where lymph node venules condense and which exits at the lymph node hilum. It is also called hilar vein." [http://orcid.org/0000-0003-3440-1876, PMID:17067937, WikipediaVersioned:Lymph_node&oldid=1001655735#Structure] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "hilar vein of lymph node" EXACT [] synonym: "vein of lymph node" EXACT [] is_a: UBERON:0001638 ! vein @@ -399321,6 +423593,8 @@ id: UBERON:8410034 name: lymph node artery def: "An artery that enters the lymph node at the hilum and branches into smaller arterioles." [http://orcid.org/0000-0003-3440-1876, PMID:17067937, WikipediaVersioned:Lymph_node&oldid=1001655735#Structure] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "artery of lymph node" EXACT [] synonym: "hilar artery of lymph node" EXACT [] is_a: UBERON:0001637 ! artery @@ -399335,6 +423609,8 @@ id: UBERON:8410035 name: medullary arteriole of lymph node def: "An arteriole that arises from the hilar artery of a lymph node and radiates centrifugally, branching in the medulla." [http://orcid.org/0000-0003-3440-1876, PMID:17067937] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "arteriole of medulla of lymph node" EXACT [] is_a: UBERON:8410042 ! arteriole of lymph node intersection_of: UBERON:0001980 ! arteriole @@ -399350,6 +423626,8 @@ id: UBERON:8410036 name: medullary venule of lymph node def: "Medullary venules are a continuation of high endothelial venules which condense repeatedly in the interfollicular cortex and peripheral deep cortical unit and then transition to medullary venules at the corticomedullary junction. The medullary venules condense and return centripetally to the hilar vein." [http://orcid.org/0000-0003-3440-1876, PMID:17067937] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "venule of medulla of lymph node" EXACT [] is_a: UBERON:8410041 ! venule of lymph node intersection_of: UBERON:0001979 ! venule @@ -399362,6 +423640,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:8410037 name: high endothelial venule def: "High endothelial venules are specialized blood vessels adapted for lymphocyte trafficking. They form a spatially organized network, which controls both the type of lymphocyte and the site of entry into lymphoid tissues. Uniquely, high endothelial venules express vascular addressins that regulate lymphocyte entry into lymphoid organs. They perform this function in all lymphoid organs except the spleen." [http://orcid.org/0000-0003-3440-1876, PMID:28217126] +subset: human_subset +subset: mouse_subset synonym: "HEV" BROAD OMO:0003000 [] xref: BTO:0004528 xref: NCIT:C32739 @@ -399373,6 +423653,8 @@ id: UBERON:8410038 name: high endothelial venule of lymph node def: "A high endothelial venule that is part of a of lymph node." [http://orcid.org/0000-0003-3440-1876, PMID:28217126] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lymph node high endothelial venule" EXACT [] is_a: UBERON:8410037 ! high endothelial venule is_a: UBERON:8410041 ! venule of lymph node @@ -399386,6 +423668,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:8410039 name: high endothelial venule of appendix def: "A high endothelial venule that is located in the vermiform appendix." [http://orcid.org/0000-0003-3440-1876, PMID:28217126] +subset: human_subset +subset: mouse_subset synonym: "appendix high endothelial venule" EXACT [] synonym: "high endothelial venule of appendix vermiformis" EXACT [] synonym: "high endothelial venule of vermiform appendix" EXACT [] @@ -399400,6 +423684,8 @@ relationship: part_of UBERON:0001154 ! vermiform appendix id: UBERON:8410040 name: high endothelial venule of small intestine Peyer's patch def: "A high endothelial venule that is located in a Peyer's patch in the small intestine." [http://orcid.org/0000-0003-3440-1876, http://orcid.org/0000-0003-4183-8865, PMID:20800822, PMID:28217126] +subset: human_subset +subset: mouse_subset synonym: "high endothelial venule of Peyer's patch" BROAD [] synonym: "high endothelial venule of Peyer's patch of small intestine" EXACT [] is_a: UBERON:8410037 ! high endothelial venule @@ -399413,6 +423699,8 @@ id: UBERON:8410041 name: venule of lymph node def: "A venule that is part of a lymph node." [http://orcid.org/0000-0003-3440-1876, PMID:17067937] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lymph node venule" EXACT [] is_a: UBERON:0001979 ! venule intersection_of: UBERON:0001979 ! venule @@ -399426,6 +423714,8 @@ id: UBERON:8410042 name: arteriole of lymph node def: "An arteriole that is part of a lymph node." [http://orcid.org/0000-0003-3440-1876, PMID:17067937] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lymph node arteriole" EXACT [] is_a: UBERON:0001980 ! arteriole intersection_of: UBERON:0001980 ! arteriole @@ -399439,6 +423729,8 @@ id: UBERON:8410043 name: bronchus submucosal gland def: "A submucosal gland located in a bronchus." [http://orcid.org/0000-0003-3440-1876, http://orcid.org/0000-0003-4183-8865] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "airway submucosal gland" BROAD [] synonym: "bronchial submucosal gland" EXACT [] synonym: "submucosal bronchial gland" EXACT [] @@ -399454,6 +423746,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:8410044 name: vein of appendix def: "A vein that is part of a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "vein of appendix vermiformis" EXACT [] synonym: "vein of vermiform appendix" EXACT [] is_a: UBERON:0001638 ! vein @@ -399466,6 +423760,8 @@ relationship: part_of UBERON:0001154 ! vermiform appendix id: UBERON:8410045 name: artery of appendix def: "An artery that is part of a vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "artery of appendix vermiformis" EXACT [] synonym: "artery of vermiform appendix" EXACT [] is_a: UBERON:0001637 ! artery @@ -399478,6 +423774,8 @@ relationship: part_of UBERON:0001154 ! vermiform appendix id: UBERON:8410046 name: appendix smooth muscle circular layer def: "A circular muscle layer of muscular coat that is part of a vermiform appendix smooth muscle." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "smooth muscle circular layer of appendix" EXACT [] synonym: "smooth muscle circular layer of appendix vermiformis" EXACT [] synonym: "smooth muscle circular layer of vermiform appendix" EXACT [] @@ -399491,6 +423789,8 @@ relationship: part_of UBERON:0001154 ! vermiform appendix id: UBERON:8410047 name: appendix smooth muscle longitudinal layer def: "A longitudinal muscle layer of muscular coat that is part of a vermiform appendix smooth muscle." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "smooth muscle longitudinal layer of appendix" EXACT [] synonym: "smooth muscle longitudinal layer of appendix vermiformis" EXACT [] synonym: "smooth muscle longitudinal layer of vermiform appendix" EXACT [] @@ -399504,6 +423804,8 @@ relationship: part_of UBERON:0001154 ! vermiform appendix id: UBERON:8410048 name: venule of colon def: "A venule located in the colon." [https://orcid.org/0000-0003-3440-1876, https://orcid.org/0000-0003-4183-8865] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001979 ! venule intersection_of: UBERON:0001979 ! venule intersection_of: part_of UBERON:0001155 ! colon @@ -399514,6 +423816,8 @@ relationship: part_of UBERON:0001155 ! colon id: UBERON:8410049 name: serosal nerve fiber of appendix def: "A nerve fiber that is located in the serosa of vermiform appendix." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "nerve fiber of serosa of appendix" EXACT [] synonym: "nerve fibre of serosa of appendix" EXACT [] synonym: "serosal nerve fiber of appendix vermiformis" EXACT [] @@ -399532,6 +423836,8 @@ relationship: part_of UBERON:0012498 ! serosa of appendix id: UBERON:8410050 name: anorectum def: "A subdivision of the digestive tract in humans that includes the rectum, the anal canal and the anus." [DOI:10.1007/978-3-319-26938-2_8, DOI:10.1148/rg.2015150037, http://orcid.org/0000-0002-6826-8770, http://orcid.org/0000-0003-3440-1876, PMID:29742860] +subset: human_subset +subset: mouse_subset synonym: "anorectal canal" NARROW [] is_a: UBERON:0004921 ! subdivision of digestive tract intersection_of: UBERON:0004921 ! subdivision of digestive tract @@ -399551,6 +423857,8 @@ property_value: has_relational_adjective "anorectal" xsd:string id: UBERON:8410051 name: lymphatic vessel of colon def: "A lymphatic vessel located in the colon." [https://orcid.org/0000-0003-3440-1876, https://orcid.org/0000-0003-4183-8865] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001473 ! lymphatic vessel intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: part_of UBERON:0001155 ! colon @@ -399562,6 +423870,8 @@ id: UBERON:8410052 name: lymph node germinal center light zone def: "Lymph node germinal centers contain two microenvironments: the light zone and the dark zone. The light zone is sparsely populated with B cells and includes additional cell types such as follicular dendritic cells, lymph node tingible macrophages and T follicular helper cells." [http://orcid.org/0000-0003-4183-8865, PMID:25656706, PMID:8011279] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "germinal center light zone" BROAD [] synonym: "light zone of germinal center" BROAD [] synonym: "light zone of lymph node germinal center" EXACT [] @@ -399575,6 +423885,8 @@ id: UBERON:8410053 name: lymph node germinal center dark zone def: "Lymph node germinal centers contain two microenvironments: the light zone and the dark zone. The dark zone is densely populated with B cell blasts and reticular cells." [http://orcid.org/0000-0003-4183-8865, PMID:25656706, PMID:8011279] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "dark zone of germinal center" BROAD [] synonym: "dark zone of lymph node germinal center" EXACT [] synonym: "germinal center dark zone" BROAD [] @@ -399587,6 +423899,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:8410054 name: lymphatic capillary of colon def: "A lymphatic capillary located in the colon." [https://orcid.org/0000-0003-3440-1876, https://orcid.org/0000-0003-4183-8865] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006842 ! lymphatic capillary is_a: UBERON:8410051 ! lymphatic vessel of colon intersection_of: UBERON:0006842 ! lymphatic capillary @@ -399598,6 +423912,8 @@ relationship: part_of UBERON:0001155 ! colon id: UBERON:8410055 name: lymphatic capillary of anorectum def: "A lymphatic capillary located in the anorectum." [https://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006842 ! lymphatic capillary intersection_of: UBERON:0006842 ! lymphatic capillary intersection_of: part_of UBERON:8410050 ! anorectum @@ -399608,6 +423924,8 @@ relationship: part_of UBERON:8410050 ! anorectum id: UBERON:8410056 name: capillary of anorectum def: "A capillary that is part of the anorectum." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "blood vessel capillary of anorectum" EXACT [] is_a: UBERON:0001982 ! capillary intersection_of: UBERON:0001982 ! capillary @@ -399619,6 +423937,8 @@ relationship: part_of UBERON:8410050 ! anorectum id: UBERON:8410057 name: capillary of colon def: "A capillary that is part of the colon." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "blood vessel capillary of colon" EXACT [] is_a: UBERON:0001982 ! capillary intersection_of: UBERON:0001982 ! capillary @@ -399631,6 +423951,8 @@ id: UBERON:8410058 name: myenteric nerve plexus of colon def: "Myenteric nerve plexus that is located in the colon." [http://orcid.org/0000-0003-3440-1876] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0002439 ! myenteric nerve plexus intersection_of: UBERON:0002439 ! myenteric nerve plexus intersection_of: part_of UBERON:0001155 ! colon @@ -399643,6 +423965,8 @@ id: UBERON:8410059 name: submucous nerve plexus of colon def: "Submucous nerve plexus that is located in the colon." [http://orcid.org/0000-0003-3440-1876] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0005304 ! submucous nerve plexus intersection_of: UBERON:0005304 ! submucous nerve plexus intersection_of: part_of UBERON:0001155 ! colon @@ -399654,6 +423978,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:8410060 name: colon smooth muscle circular layer def: "A circular muscle layer of muscular coat that is part of a colon smooth muscle." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "smooth muscle circular layer of colon" EXACT [] is_a: UBERON:0012398 ! large intestine smooth muscle circular layer intersection_of: UBERON:0012368 ! circular muscle layer of muscular coat @@ -399667,6 +423993,8 @@ relationship: part_of UBERON:0004220 ! large intestine smooth muscle id: UBERON:8410061 name: colon smooth muscle longitudinal layer def: "A longitudinal muscle layer of muscular coat that is part of a colon smooth muscle." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset +subset: mouse_subset synonym: "smooth muscle longitudinal layer of colon" EXACT [] is_a: UBERON:0012399 ! large intestine smooth muscle longitudinal layer intersection_of: UBERON:0012369 ! longitudinal muscle layer of muscular coat @@ -399681,6 +424009,8 @@ id: UBERON:8410062 name: parasympathetic cholinergic nerve def: "A parasympathetic nerve that releases acetylcholine." [PMID:24676230] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0004293 ! parasympathetic nerve relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: overlaps CL:0000108 ! cholinergic neuron @@ -399692,6 +424022,8 @@ id: UBERON:8410063 name: myenteric nerve plexus of small intestine def: "Myenteric nerve plexus that is part of the small intestine." [http://orcid.org/0000-0003-3440-1876] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0002439 ! myenteric nerve plexus intersection_of: UBERON:0002439 ! myenteric nerve plexus intersection_of: part_of UBERON:0002108 ! small intestine @@ -399704,6 +424036,8 @@ id: UBERON:8410064 name: submucous nerve plexus of small intestine def: "Submucous nerve plexus that is located in the small intestine." [http://orcid.org/0000-0003-3440-1876] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0005304 ! submucous nerve plexus intersection_of: UBERON:0005304 ! submucous nerve plexus intersection_of: part_of UBERON:0002108 ! small intestine @@ -399715,6 +424049,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:8410065 name: lymph node follicle marginal zone def: "Histologically, the marginal zone pattern of the lymph node is characterized by lymphoid follicles with three distinct layers. The inner layer is composed of follicular center zones, the middle layer of darkly stained mantle zones, and the outer layer of marginal zones. However, the marginal zone pattern is rarely seen in reactive lymph nodes except for mesenteric lymph nodes. Lymph node marginal zones are populated by marginal zone B cells which express CD19 and CD20 and have the phenotypic features of memory B cells." [http://orcid.org/0000-0003-4183-8865, PMID:11026094, PMID:12076268] +subset: human_subset +subset: mouse_subset synonym: "lymph node marginal zone" BROAD [] synonym: "marginal zone of lymph node" BROAD [] synonym: "marginal zone of lymph node follicle" EXACT [] @@ -399727,6 +424063,8 @@ id: UBERON:8410066 name: lymph node paracortex def: "The lymph node paracortex is the middle layer of the lymph node and is mostly populated by T cells and dendritic cells. The paracortex also contains specialised blood vessels called high endothelial venules which allow lymphocytes to enter the node." [http://orcid.org/0000-0001-9990-8331, http://orcid.org/0000-0003-4183-8865, https://www.immunology.org/public-information/bitesized-immunology/organs-and-tissues/lymph-node] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0001744 ! lymphoid tissue relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0010417 ! lymph node T cell domain @@ -399737,6 +424075,8 @@ id: UBERON:8410067 name: lymph node interfollicular cortex def: "Follicules in the lymph node are surrounded and separated by the interfollicular cortex. Together with the lymph node follicle, the interfollicular cortex of the lymph node lobule make up the superficial cortex of the lymph node. Capillaries empty into the high endothelial venules located in the interfollicular cortex. The interfollicular cortex also serves as transit corriders for lymphocytes migrating between the B and T cell areas." [http://orcid.org/0000-0001-9990-8331, http://orcid.org/0000-0003-4183-8865, PMID:17067937] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "interfollicular cortex of lymph node" EXACT [] is_a: UBERON:0001744 ! lymphoid tissue relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 @@ -399747,7 +424087,9 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:8410068 name: capillary of small intestine def: "A capillary that is part of a small intestine." [http://orcid.org/0000-0003-3440-1876] +subset: human_subset subset: location_grouping +subset: mouse_subset synonym: "blood vessel capillary of small intestine" EXACT [] synonym: "small intestine capillary" EXACT [] is_a: UBERON:0001982 ! capillary @@ -399772,6 +424114,8 @@ property_value: dcterms-date "2022-01-24T16:47:47Z" xsd:dateTime id: UBERON:8410070 name: levator costarum def: "A chest muscle with a role in forceful inspiration. In human, there are twelve levatores costarum on either side of the chest; they are small tendinous and fleshy bundles arising from the ends of the transverse processes of the seventh cervical and upper eleven thoracic vertebrae. They pass obliquely downward and laterally, like the fibers of the intercostales externi, and each is inserted into the outer surface of the rib immediately below the vertebra from which it takes origin, between the tubercle and the angle (levatores costarum breves). Each of the four lower muscles divides into two fasciculi, one of which is inserted as above described; the other passes down to the second rib below its origin (levatores costarum longi)." [WikipediaVersioned:Levatores_costarum_muscles&oldid=876138804] +subset: human_subset +subset: mouse_subset synonym: "levator costarum muscle" EXACT [] synonym: "levatores costarum" EXACT [] synonym: "levatores costarum muscles" EXACT [] @@ -399789,6 +424133,8 @@ id: UBERON:8410071 name: subcapsular sinus ceiling def: "The section of the lymph node capsule that faces the subcapsular sinus. In human, it's characterized by specific protein markers." [https://orcid.org/0000-0001-7655-4833, PMID:31402260] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ceiling of subcapsular sinus of lymph node" EXACT [] synonym: "floor of capsule of lymph node" EXACT [] synonym: "subcapsular sinus of lymph node ceiling" EXACT [] @@ -399804,6 +424150,8 @@ id: UBERON:8410072 name: subcapsular sinus floor def: "The section of the lymph node cortex that faces the subcapsular sinus. In human, it's characterized by specific protein markers." [https://orcid.org/0000-0001-7655-4833, PMID:31402260] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "ceiling of cortex of lymph node" EXACT [] synonym: "floor of subcapsular sinus of lymph node" EXACT [] synonym: "subcapsular sinus of lymph node floor" EXACT [] @@ -399819,6 +424167,8 @@ id: UBERON:8410073 name: medullary region of kidney def: "A part of the kidney that comprises kidney pyramids and renal columns." [http://orcid.org/0000-0002-7073-9172] comment: Note that 'medullary region of kidney' is not synonymous with 'renal medulla'. The former covers kidney pyramids and renal columns, which are histologically different, while the latter is composed of kidney pyramids only. +subset: human_subset +subset: mouse_subset synonym: "kidney medullary region" EXACT [] is_a: UBERON:0000064 ! organ part relationship: has_part UBERON:0001284 ! renal column @@ -399833,6 +424183,8 @@ id: UBERON:8410074 name: lymph node paracortical sinus def: "A lymph node sinus intimately associated with paracortical cords that originate in the interfollicular cortex and extend into the medullary cords." [https://orcid.org/0000-0001-7655-4833, PMID:17067937, PMID:9176696] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "cortical sinus" RELATED [] synonym: "lymphatic labyrinth" RELATED [] synonym: "paracortical sinus" BROAD [] @@ -399848,6 +424200,8 @@ id: UBERON:8410075 name: lymph node paracortical cord def: "Lymph node paracortical parenchyma containing dense networks of T cells, B cells, fibroblastic reticular cells, and dendritic cells." [https://orcid.org/0000-0001-7655-4833, PMID:17067937, PMID:49306] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "paracortical cord" BROAD [] is_a: UBERON:0000353 ! parenchyma relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 @@ -399859,6 +424213,8 @@ property_value: dcterms-date "2022-02-24T11:40:24Z" xsd:dateTime id: UBERON:8410076 name: glomus coccygeum def: "A glomus-like dermal microanatomical structure found in human and placed in front of, or immediately below, the tip of the coccyx. Each glomus consists of one or more arterial segments that branch into a number of glomic arterioles surrounded by rows of round, uniform, epithelioid contractile cells, that drain into a collecting venous plexus." [https://orcid.org/0000-0002-1572-1316, PMID:28545163, PMID:30799440] +subset: human_subset +subset: mouse_subset synonym: "coccygeal body" EXACT [FMA:15649] synonym: "coccygeal gland" EXACT [WikipediaVersioned:Coccygeal_glomus&oldid=1019065130] synonym: "coccygeal glomus" EXACT [FMA:15649] @@ -399874,6 +424230,8 @@ property_value: dcterms-date "2022-02-24T14:12:33Z" xsd:dateTime id: UBERON:8410077 name: airway submucosal gland def: "A submucosal gland found in a respiratory tract." [http://orcid.org/0000-0003-3440-1876, http://orcid.org/0000-0003-4183-8865] +subset: human_subset +subset: mouse_subset synonym: "respiratory tract submucosal gland" EXACT [] synonym: "submucosal gland of respiratory tract" EXACT [] xref: EFO:0010666 @@ -399891,6 +424249,8 @@ id: UBERON:8410078 name: right lymphatic duct def: "A great lymphatic vessel that empties lymph into one of the subclavian veins. In humans, there are two lymph ducts in the body: the right lymphatic duct and the thoracic duct. The right lymphatic duct drains lymph from the right upper limb, right side of thorax and right halves of head and neck. The thoracic duct drains lymph into the circulatory system at the left brachiocephalic vein between the left subclavian and left internal jugular veins." [Wikipedia:Lymph_duct] comment: This term ('right lymphatic duct') would not need a 'left' counterpart; the other great lymph duct in the human body is represented by UBERON:0001631 'thoracic duct'. +subset: human_subset +subset: mouse_subset synonym: "ductus lymphaticus dexter" EXACT OMO:0003011 [] xref: FMA:5832 is_a: UBERON:0001473 ! lymphatic vessel @@ -399903,6 +424263,8 @@ id: UBERON:8410079 name: red bone marrow of iliac crest def: "Red bone marrow located in an iliac crest." [http://orcid.org/0000-0001-7655-4833, https://en.wikipedia.org/wiki/Iliac_crest] comment: The iliac crest has a large amount of red bone marrow, and thus it is the site of bone marrow harvests (from both sides) to collect the stem cells used in bone marrow transplantation. +subset: human_subset +subset: mouse_subset synonym: "iliac crest red bone marrow" EXACT [] is_a: UBERON:0000361 ! red bone marrow intersection_of: UBERON:0000361 ! red bone marrow @@ -399914,6 +424276,8 @@ created_by: http://orcid.org/0000-0002-2825-0621 id: UBERON:8410080 name: red bone marrow of sternum def: "Red bone marrow located in the sternum." [http://orcid.org/0000-0001-7655-4833] +subset: human_subset +subset: mouse_subset synonym: "sternum red bone marrow" EXACT [] is_a: UBERON:0000361 ! red bone marrow intersection_of: UBERON:0000361 ! red bone marrow @@ -399925,6 +424289,8 @@ created_by: http://orcid.org/0000-0002-2825-0621 id: UBERON:8410081 name: blood microvessel def: "Any of the smallest blood vessels where blood circulates within organ tissues. Microvessels include terminal arterioles, metarterioles, capillaries, and venules (but exclude lymphatic capillaries). Arterioles carry oxygenated blood to the capillaries, and blood flows out of the capillaries through venules into veins." [http://orcid.org/0000-0002-7073-9172, Wikipedia:Microcirculation] +subset: human_subset +subset: mouse_subset synonym: "microvasculature" BROAD [] synonym: "microvessel" BROAD [] is_a: UBERON:0001981 ! blood vessel @@ -399937,6 +424303,8 @@ created_by: http://orcid.org/0000-0002-2825-0621 id: UBERON:8420000 name: hair of scalp def: "Hair that grows on the scalp." [PMID:3126903] +subset: human_subset +subset: mouse_subset synonym: "hair" BROAD [PMID:30783333] is_a: UBERON:0016446 ! hair of head intersection_of: UBERON:0001037 ! strand of hair @@ -399948,19 +424316,23 @@ relationship: part_of UBERON:0000403 ! scalp id: UBERON:8420001 name: ethmoidal vein def: "A vein that accompanies an ethmoidal artery and drains the ethmoidal cells." [https://www.ncbi.nlm.nih.gov/books/NBK499826/, wikipedia:Ethmoidal_veins] +subset: human_subset +subset: mouse_subset xref: FMA:51770 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: dc-contributor https://orcid.org/0000-0001-8314-2140 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0002200 ! vasculature of head -relationship: vessel_drains_blood_from UBERON:0011241 ! ethmoid region +relationship: RO:0020102 UBERON:0011241 ! vessel drains blood from ethmoid region property_value: dcterms-date "2024-08-28T09:55:00Z" xsd:string [Term] id: UBERON:8420002 name: anterior ethmoidal vein def: "An ethmoidal vein that accompanies an anterior ethmoidal artery. The anterior ethmoidal vein normally drains into the inferior root of the superior ophthalmic vein." [https://doi.org/10.1007/978-3-031-40697-3_23, https://doi.org/10.1167/iovs.02-0865] +subset: human_subset +subset: mouse_subset xref: FMA:51771 is_a: UBERON:8420001 ! ethmoidal vein relationship: dc-contributor https://orcid.org/0000-0001-8314-2140 @@ -399971,6 +424343,8 @@ property_value: dcterms-date "2024-08-28T09:55:00Z" xsd:string id: UBERON:8420003 name: posterior ethmoidal vein def: "An ethmoidal vein that accompanies a posterior ethmoidal artery. The posterior ethmoidal vein often drains into a venous network under the orbital roof." [https://doi.org/10.1007/978-3-031-40697-3_23, https://doi.org/10.1167/iovs.02-0865] +subset: human_subset +subset: mouse_subset xref: FMA:51772 is_a: UBERON:8420001 ! ethmoidal vein relationship: dc-contributor https://orcid.org/0000-0001-8314-2140 @@ -399981,6 +424355,8 @@ id: UBERON:8440000 name: cortical layer II/III def: "A laminar subdivision of the neocortex that is comprised of a part of layer II and a part of layer III." [PMID:34616063] comment: In rodents, layer II/III refers to a mereological sum of layers II and III as there is no clear architectonic boundary between them. {xref="PMID:29311847"} +subset: human_subset +subset: mouse_subset synonym: "cerebral cortex layer 2/3" EXACT [] synonym: "neocortex layer 2/3" EXACT [] is_a: UBERON:8440004 ! laminar subdivision of the cortex @@ -399989,6 +424365,8 @@ is_a: UBERON:8440004 ! laminar subdivision of the cortex id: UBERON:8440001 name: cortical layer IV/V def: "A laminar subdivision of the neocortex that is comprised of a part of layer IV and a part of layer V." [PMID:34616063] +subset: human_subset +subset: mouse_subset synonym: "cerebral cortex layer 4/5" EXACT [] synonym: "neocortex layer 4/5" EXACT [] is_a: UBERON:8440004 ! laminar subdivision of the cortex @@ -399997,6 +424375,8 @@ is_a: UBERON:8440004 ! laminar subdivision of the cortex id: UBERON:8440002 name: cortical layer V/VI def: "A laminar subdivision of the neocortex that is comprised of a part of layer V and a part of layer VI." [PMID:34616063] +subset: human_subset +subset: mouse_subset synonym: "cerebral cortex layer 5/6" EXACT [] synonym: "neocortex layer 5/6" EXACT [] is_a: UBERON:8440004 ! laminar subdivision of the cortex @@ -400005,6 +424385,8 @@ is_a: UBERON:8440004 ! laminar subdivision of the cortex id: UBERON:8440003 name: cortical layer VIb def: "The deepest layer of the neocortex. While layer 6b is considered part of layer 6, it is distinct morphologically, genetically, and developmentally from the rest of layer 6. Neurons in L6b project to cortical targets and higher-order thalamus and develop from a precursor population that arises from the subplate." [PMID:32160552] +subset: human_subset +subset: mouse_subset synonym: "cerebral cortex layer 6b" EXACT [] synonym: "neocortex layer 6b" EXACT [] is_a: UBERON:0002301 ! layer of neocortex @@ -400015,6 +424397,8 @@ relationship: part_of UBERON:0005395 ! cortical layer VI id: UBERON:8440004 name: laminar subdivision of the cortex def: "One or a subset of adjacent layers of the neocortex." [ISBN-10:0-87893-742-0] +subset: human_subset +subset: mouse_subset is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0001950 ! neocortex @@ -400023,6 +424407,8 @@ id: UBERON:8440005 name: rostral periventricular region of the third ventricle def: "A functional anatomical construct containing the key estrogen-regulated inputs to gonadotropin-releasing hormone expressing (GnRH) neurons necessary for estrogen positive feedback. The rostral periventricular region of the third ventricle contains a population of neurons, scattered through the nuclei of the anteroventral periventricular (AVPV), periventricular preoptic (PVpo), and median preoptic (MEPO), that project directly to GnRH neurons and express ER-alpha." [PMID:17604108] comment: In rats and mice, the anteroventral periventricular nucleus plus the periventricular nucleus make up the rostral periventricular region of the third ventricle (RP3V). Overlaps is used (instead of has_part that this comment suggests should be used) as PMID:17604108 suggest that the region refers to cells that are scattered in the area. {xref="WikipediaVersioned:Anteroventral_periventricular_nucleus&oldid=966137187"} +subset: human_subset +subset: mouse_subset synonym: "RP3V" EXACT [PMID:17604108] is_a: UBERON:0035014 ! functional part of brain relationship: overlaps UBERON:0002622 ! preoptic periventricular nucleus @@ -400035,6 +424421,8 @@ id: UBERON:8440007 name: periventricular hypothalamic nucleus, anterior part def: "The anterior part of the periventricular hypothalamic nucleus." [MBA:30] comment: This seperation is based on the Allen mouse brain atlas. +subset: human_subset +subset: mouse_subset synonym: "PVa" EXACT [MBA:30] xref: MBA:30 is_a: UBERON:0006568 ! hypothalamic nucleus @@ -400046,6 +424434,8 @@ id: UBERON:8440008 name: periventricular hypothalamic nucleus, intermediate part def: "The intermediate part of the periventricular hypothalamic nucleus." [MBA:118] comment: This seperation is based on the Allen mouse brain atlas. +subset: human_subset +subset: mouse_subset synonym: "PVi" EXACT [MBA:118] xref: MBA:118 is_a: UBERON:0006568 ! hypothalamic nucleus @@ -400057,6 +424447,7 @@ id: UBERON:8440010 name: Brodmann (1909) area 17 def: "A subdivision of the cytoarchitecturally defined occipital region of cerebral cortex in the human. Defined by the band of Gennari, which gives it the name striate (furrowed) area, it occupies the banks of the calcarine sulcus which are located in the cuneus and the lingual gyrus of the occipital lobe. Cytoarchitecturally it is bounded by the area 18 of Brodmann (human) which surrounds it ( Brodmann-1909 ). In the mouse ( Paxinos-2001 ) and the rat ( Swanson-1998 ) it is located on the dorsolateral surface of the cerebral hemisphere[BrainInfo]." [BrainInfo:2102] comment: This term was split out from primary visual cortex as many of the axioms and annotations were specific to primates or humans. +subset: human_subset synonym: "area 17 of Brodmann" RELATED [Wikipedia:Visual_cortex] synonym: "area 17 of Brodmann-1909" EXACT [BIRNLEX:1748] synonym: "area striata" RELATED [] @@ -400100,6 +424491,8 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/70/Br id: UBERON:8440011 name: cortical visual area def: "The part of the cortex that is responsible for processing visual information." [https://orcid.org/0000-0001-7258-9596] +subset: human_subset +subset: mouse_subset is_a: UBERON:0035014 ! functional part of brain intersection_of: UBERON:0035014 ! functional part of brain intersection_of: capable_of_part_of GO:0007601 ! visual perception @@ -400113,6 +424506,8 @@ id: UBERON:8440012 name: cerebral nuclei def: "One of three components of the cerebrum that is a composite structure of the endbrain defined on the basis of origin from the ventricular ridge of the embryonic Encephalon. It consists of the extended striatum and the extended pallidum." [neuronames:2677] comment: This was added as a more precise mapping to the Allen brain atlas (as opposed to collection of basal ganglia) +subset: human_subset +subset: mouse_subset synonym: "CNU" EXACT [MBA:623] xref: BTO:0006534 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:10331 @@ -400128,6 +424523,8 @@ id: UBERON:8440013 name: fasciola cinerea def: "A small paired band that passes around the splenium of the corpus callosum from the lateral longitudinal stria to the dentate gyrus. The FC exhibits clear anatomical borders with the distalmost region of the CA1." [https://medical-dictionary.thefreedictionary.com/fasciola+cinerea, PMID:34999186] comment: This was added as a more precise mapping to the Allen brain atlas (as opposed to fasciolar gyrus) +subset: human_subset +subset: mouse_subset synonym: "FC" EXACT [MBA:982] xref: DMBA:112892265 xref: MBA:982 @@ -400141,6 +424538,8 @@ id: UBERON:8440014 name: ventrolateral preoptic nucleus def: "A small cluster of neurons situated in the anterior hypothalamus, sitting just above and to the side of the optic chiasm in the brain of humans and other animals." [WikipediaVersioned:Ventrolateral_preoptic_nucleus&oldid=1045973404] comment: This was added as a more precise mapping to the Allen brain atlas (as opposed to pars postrema of ventral lateral nucleus) +subset: human_subset +subset: mouse_subset synonym: "intermediate nucleus of the preoptic area (IPA)" EXACT [WikipediaVersioned:Ventrolateral_preoptic_nucleus&oldid=1045973404] synonym: "VLPO" EXACT [WikipediaVersioned:Ventrolateral_preoptic_nucleus&oldid=1045973404] xref: DMBA:15612 @@ -400152,6 +424551,8 @@ relationship: part_of UBERON:0001898 ! hypothalamus id: UBERON:8440015 name: noradrenergic cell groups def: "Collections of neurons in the central nervous system that have been demonstrated by histochemical fluorescence to contain the neurotransmitter norepinephrine (noradrenalin)." [WikipediaVersioned:Noradrenergic_cell_groups&oldid=965992184] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002616 ! regional part of brain relationship: composed_primarily_of CL:0000459 ! noradrenergic cell @@ -400159,6 +424560,8 @@ relationship: composed_primarily_of CL:0000459 ! noradrenergic cell id: UBERON:8440016 name: noradrenergic cell group A1 def: "A group of cells in the vicinity of the lateral reticular nucleus of the medullary reticular formation that label for norepinephrine in primates." [WikipediaVersioned:Noradrenergic_cell_group_A1&oldid=903443213] +subset: human_subset +subset: mouse_subset is_a: UBERON:8440015 ! noradrenergic cell groups relationship: part_of UBERON:0002559 ! medullary reticular formation @@ -400166,6 +424569,8 @@ relationship: part_of UBERON:0002559 ! medullary reticular formation id: UBERON:8440017 name: noradrenergiccell group A2 def: "A group of cells in the vicinity of the dorsal motor nucleus of the vagus nerve in the medulla that label for norepinephrine in primates and rodents." [WikipediaVersioned:Noradrenergic_cell_group_A2&oldid=870891895] +subset: human_subset +subset: mouse_subset is_a: UBERON:8440015 ! noradrenergic cell groups relationship: part_of UBERON:0001896 ! medulla oblongata @@ -400173,6 +424578,8 @@ relationship: part_of UBERON:0001896 ! medulla oblongata id: UBERON:8440018 name: noradrenergic cell group A4 def: "A group of cells exhibiting noradrenergic fluorescence that, in the rat, are located in the Tegmen ventriculi quarti (roof of the fourth ventricle) ventral to the cerebellar nuclei, and in the macaque, are found at the edge of the lateral recess of the fourth ventricle caudally, extending to beneath the floor of the ventricle where they merge with the noradrenergic group A6, the locus ceruleus." [WikipediaVersioned:Noradrenergic_cell_group_A4&oldid=773500348] +subset: human_subset +subset: mouse_subset xref: DMBA:16937 is_a: UBERON:8440015 ! noradrenergic cell groups relationship: adjacent_to UBERON:0002422 ! fourth ventricle @@ -400182,6 +424589,8 @@ relationship: ventral_to UBERON:0002130 ! cerebellar nuclear complex id: UBERON:8440019 name: noradrenergic cell group A5 def: "A group of cells in the vicinity of the superior olivary complex in the pontine tegmentum that label for norepinephine in primates, rodents, and other mammals." [WikipediaVersioned:Noradrenergic_cell_group_A5&oldid=1081186383] +subset: human_subset +subset: mouse_subset is_a: UBERON:8440015 ! noradrenergic cell groups relationship: part_of UBERON:0003023 ! pontine tegmentum @@ -400189,6 +424598,8 @@ relationship: part_of UBERON:0003023 ! pontine tegmentum id: UBERON:8440021 name: noradrenergic cell group A7 def: "A group of cells fluorescent for norepinephrine that is located in the pontine reticular formation ventral to the superior cerebellar peduncle of the pons in rodents and in primates." [WikipediaVersioned:Noradrenergic_cell_group_A7&oldid=870891935] +subset: human_subset +subset: mouse_subset xref: DMBA:17052 is_a: UBERON:8440015 ! noradrenergic cell groups relationship: part_of UBERON:0002573 ! pontine reticular formation @@ -400205,6 +424616,7 @@ relationship: part_of UBERON:0002587 ! nucleus subceruleus id: UBERON:8440023 name: noradrenergic cell group Acg def: "A group of cells fluorescent for norepinephrine that are located in the central gray of the midbrain at the level of the trochlear nucleus in the squirrel monkey (Saimiri) and to a lesser degree in the macaque." [WikipediaVersioned:Noradrenergic_cell_group_Acg&oldid=981960786] +subset: human_subset is_a: UBERON:8440015 ! noradrenergic cell groups relationship: in_taxon NCBITaxon:314293 ! Simiiformes @@ -400212,6 +424624,7 @@ relationship: in_taxon NCBITaxon:314293 ! Simiiformes id: UBERON:8440024 name: visceral area def: "A cortical area between the agranular insular cortex and the supplemental somatosensory area in rats and mice. The VISC is the architectonically equivalent structure granular insula in humans." [neuronames:1192&questID=2709] +subset: mouse_subset synonym: "VISC" EXACT [MBA:677] xref: MBA:677 is_a: UBERON:0002616 ! regional part of brain @@ -400224,6 +424637,8 @@ relationship: ventral_to UBERON:0008934 ! secondary somatosensory cortex id: UBERON:8440025 name: parapyramidal nucleus def: "A small group of cells located lateral to the pyramid of the medulla in the rat and the mouse that functionally it belongs to the reticular formation of the subcortical motor system." [neuronames:1771] +subset: human_subset +subset: mouse_subset synonym: "PPY" EXACT [MBA:1069] xref: MBA:1069 is_a: UBERON:0002616 ! regional part of brain @@ -400233,6 +424648,8 @@ relationship: part_of UBERON:0002298 ! brainstem id: UBERON:8440026 name: parapyramidal nucleus, deep part def: "The part of the parapyramidal nucleus that is closely adjacent to the inner surface of the pyramidal tract." [neuronames:3451&questID=1771] +subset: human_subset +subset: mouse_subset synonym: "PPYd" EXACT [MBA:185] xref: MBA:185 is_a: UBERON:8440025 ! parapyramidal nucleus @@ -400241,6 +424658,8 @@ is_a: UBERON:8440025 ! parapyramidal nucleus id: UBERON:8440027 name: parapyramidal nucleus, superficial part def: "The part of the parapyramidal nucleus that is located on the ventral surface of the medulla lateral to the pyramidal tract." [neuronames:3452&questID=1771] +subset: human_subset +subset: mouse_subset synonym: "PPYs" EXACT [MBA:193] xref: MBA:193 is_a: UBERON:8440025 ! parapyramidal nucleus @@ -400249,6 +424668,8 @@ is_a: UBERON:8440025 ! parapyramidal nucleus id: UBERON:8440028 name: Perihypoglossal nuclei def: "A group of neurons in the floor of the fourth ventricle, in close proximity to the nucleus of the hypoglossal nerve in the gray substance of the medulla oblongata, all of which contain cells with characteristics suggestive of reticular connections." [WikipediaVersioned:Perihypoglossal_nuclei&oldid=821664008] +subset: human_subset +subset: mouse_subset synonym: "nuclei perihypoglossales" EXACT [WikipediaVersioned:Perihypoglossal_nuclei&oldid=821664008] synonym: "perihypoglossal complex" EXACT [WikipediaVersioned:Perihypoglossal_nuclei&oldid=821664008] synonym: "perihypoglossal nuclear complex" EXACT [WikipediaVersioned:Perihypoglossal_nuclei&oldid=821664008] @@ -400262,6 +424683,8 @@ relationship: part_of UBERON:0001896 ! medulla oblongata id: UBERON:8440029 name: rubroreticular tract def: "Nerve fibers that originate in the magnocellular red nucleus, cross to the other side of the midbrain, and descend in the lateral part of the brainstem tegmentum in the midbrain, and travel through the lateral funiculus of the spinal cord, coursing adjacent to the lateral corticospinal tract." [WikipediaVersioned:Rubrospinal_tract&oldid=1002226835] +subset: human_subset +subset: mouse_subset xref: MBA:221 is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0001017 ! central nervous system @@ -400270,6 +424693,8 @@ relationship: part_of UBERON:0001017 ! central nervous system id: UBERON:8440030 name: striatum-like amygdalar nuclei def: "A part of the striatum which is primarilly composed of amygdalar areas. The sAMY is composed of the anterior amygdalar area, central amygdalar nucleus, intercalated amygdalar nucleus, medial amygdalar nucleus, and the bed nucleus of the accessory olfactory tract." [MBA:278] +subset: human_subset +subset: mouse_subset synonym: "sAMY" EXACT [MBA:278] xref: MBA:278 is_a: UBERON:0009663 ! telencephalic nucleus @@ -400279,6 +424704,8 @@ relationship: part_of UBERON:0002435 ! striatum id: UBERON:8440031 name: medial corticohypothalmic tract def: "The main route taken by fibers from the ventral subiculum to the hypothalamus, where they innervate the medial preoptic area, “shell” of the ventromedial nucleus, dorsomedial nucleus, ventral premammillary nucleus, and cell-poor zone around the medial mammillary nucleus." [PMID:1430328] +subset: human_subset +subset: mouse_subset synonym: "mct" EXACT [MBA:428] xref: MBA:428 is_a: UBERON:0001018 ! axon tract @@ -400288,6 +424715,8 @@ relationship: part_of UBERON:0001017 ! central nervous system id: UBERON:8440032 name: prelimbic area def: "A region in the medial prefrontal cortex that is dorsal to the infralimbic area important in expression of conditioned reward and fear behaviour." [PMID:30850668] +subset: human_subset +subset: mouse_subset synonym: "PL" EXACT [MBA:972] synonym: "prelimbic cortex" EXACT [PMID:30639183] synonym: "PrL" EXACT [PMID:30639183] @@ -400302,6 +424731,8 @@ relationship: present_in_taxon NCBITaxon:9989 ! Rodentia id: UBERON:8440033 name: infralimbic area def: "A region in the medial prefrontal cortex that is ventral to the prelimbic area important in supression of conditioned reward and fear behaviour." [PMID:30850668] +subset: human_subset +subset: mouse_subset synonym: "IL (brain)" EXACT [PMID:30639183] synonym: "ILA" EXACT [MBA:44] synonym: "infralimbic cortex" EXACT [PMID:30639183] @@ -400316,6 +424747,8 @@ relationship: ventral_to UBERON:8440032 ! prelimbic area id: UBERON:8440034 name: bulbocerebellar tract def: "A subdivision of inferior cerebellar peduncle that connects the medulla to the cerebellum." [MBA:490] +subset: human_subset +subset: mouse_subset synonym: "bct" EXACT [MBA:490] xref: MBA:490 is_a: UBERON:0001018 ! axon tract @@ -400324,6 +424757,8 @@ is_a: UBERON:0001018 ! axon tract id: UBERON:8440035 name: sublaterodorsal nucleus def: "A region in the dorsal pons that plays a central role in inducing motor suppression during REM sleep." [PMID:31679942] +subset: human_subset +subset: mouse_subset synonym: "SLD" EXACT [MBA:358] synonym: "sublaterodorsal tegmental nucleus" EXACT [] xref: MBA:358 @@ -400335,6 +424770,8 @@ relationship: part_of UBERON:0000988 ! pons id: UBERON:8440036 name: supratrigeminal nucleus def: "A premotoneuron pool in the trigeminal reflex arc that is a key structure of jaw movement control." [PMID:26987956] +subset: human_subset +subset: mouse_subset synonym: "SUT" EXACT [MBA:534] synonym: "Vsup" EXACT [PMID:26987956] xref: DMBA:16977 @@ -400347,6 +424784,8 @@ relationship: part_of UBERON:0000988 ! pons id: UBERON:8440037 name: accessory facial motor nucleus def: "A small cluster of neurons dorsal to the facial motor nucleus in the pontine tegmentum." [WikipediaVersioned:Accessory_facial_motor_nucleus&oldid=1046234765] +subset: human_subset +subset: mouse_subset synonym: "ACVII" EXACT [MBA:576] xref: MBA:576 is_a: UBERON:0006331 ! brainstem nucleus @@ -400358,6 +424797,8 @@ relationship: part_of UBERON:0003023 ! pontine tegmentum id: UBERON:8440038 name: efferent vestibular nucleus def: "A small region of neurons in the brainstem, dorsolateral to the genu of facial nerve, that have efferents to the vestibular periphery." [PMID:26422206] +subset: human_subset +subset: mouse_subset synonym: "EV" EXACT [MBA:640] xref: MBA:640 is_a: UBERON:0006331 ! brainstem nucleus @@ -400368,6 +424809,8 @@ id: UBERON:8440039 name: piriform-amygdalar area def: "The cortical region between the cortical amygdalar area and the piriform area." [MBA:788] comment: In the human and macaque, the piriform-amygdalar area is not distinguished from the postpiriform transition area. {xref="neuronames:1776"} +subset: human_subset +subset: mouse_subset synonym: "PAA (brain)" EXACT [MBA:788] xref: MBA:788 is_a: UBERON:0002616 ! regional part of brain @@ -400378,6 +424821,8 @@ id: UBERON:8440040 name: dorsal peduncular area def: "A cytoarchitectonic area on the medial surface of the cerebral hemisphere rostral to the septum, ventral to the infralimbic area and dorsal to the tenia tecta in the mouse and rat." [neuronames:1776] comment: Some authors regard it not as a separate structure but as the ventral part of the infralimbic area. {xref="neuronames:1776"} +subset: human_subset +subset: mouse_subset synonym: "DP" EXACT [MBA:814] xref: MBA:814 is_a: UBERON:0002616 ! regional part of brain @@ -400388,6 +424833,7 @@ id: UBERON:8440041 name: tuberal nucleus (sensu Rodentia) def: "A hypothalamic region in rodents that is homologous to the lateral tuberal nucleus in humans and higher primates and is involved in energy homeostasis." [PMID:29976812, PMID:29976824] comment: While lateral tuberal nucleus is often used interchangeably with tuberal nucleus in rodents, lateral tuberal nucleus is specific to humans and higher primates. In some cases, lateral tuberal nucleus is thought to be part of the tuberal nucleus in rodents, and could possibly be homologous to human tuberal region instead. {xref="PMID:29976824", xref="neuronames:1890", xref="PMID:1362279"} +subset: mouse_subset synonym: "lateral tuberal nucleus (sensu Rodentia)" BROAD [neuronames:1890] synonym: "lateral tuberal nucleus (sensu Rodentia)" EXACT [PMID:29976812] xref: DMBA:16271 @@ -400412,6 +424858,8 @@ relationship: in_taxon NCBITaxon:32443 ! Teleostei id: UBERON:8440043 name: superior paraolivary nucleus def: "A structure embedded in the superior olivary complex that is driven by input pathways from the octopus cells in the cochlear nucleus and the neurons of the medial nucleus of the trapezoid body." [DOI:10.1093/oxfordhb/9780190849061.013.11] +subset: human_subset +subset: mouse_subset synonym: "SPON" EXACT [DOI:10.1093/oxfordhb/9780190849061.013.11] is_a: UBERON:0007247 ! nucleus of superior olivary complex relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 @@ -400420,6 +424868,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 id: UBERON:8440044 name: upper layers of the cortex def: "A laminar subdivision of the neocortex that is comprised of the more surface layers, commonly layers two through four." [DOI:10.1101/2022.10.12.511898] +subset: human_subset +subset: mouse_subset is_a: UBERON:8440004 ! laminar subdivision of the cortex relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 @@ -400501,6 +424951,8 @@ relationship: part_of UBERON:0003942 ! somatosensory system id: UBERON:8440051 name: lower layers of the cortex def: "A laminar subdivision of the neocortex that is comprised of the deeper layers, commonly layers five and six, however, could also consist part of layer four." [DOI:10.1101/2022.10.12.511898] +subset: human_subset +subset: mouse_subset is_a: UBERON:8440004 ! laminar subdivision of the cortex relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 @@ -400691,6 +425143,8 @@ relationship: part_of UBERON:0002104 ! visual system id: UBERON:8440072 name: lateral tegmental nucleus def: "A nucleus of the brain that is embedded in the pontine tegmentum, it is defined on the basis of inputs from the lateral hypothalamic area and central amygdalar nucleus, it is located ventral to the locus ceruleus, dorsal to Barrington's nucleus, lateral to the laterodorsal tegmental nucleus, and medial to the midbrain trigeminal nucleus." [neuronames:1957] +subset: human_subset +subset: mouse_subset synonym: "LTN" EXACT OMO:0003000 [MBA:283] xref: MBA:283 xref: neuronames:1957 @@ -400705,6 +425159,8 @@ relationship: ventral_to UBERON:0002148 ! locus ceruleus id: UBERON:8440073 name: magnocellular reticular nucleus def: "A nucleus of the brain that is the most ventral portion of the gigantocellular nucleus in the medullary reticular formation, between the lateral paragigantocellular nucleus and the midline or nucleus raphe magnus. Functionally it belongs to the reticular formation (functional) of the subcortical motor system." [NeuroNames:1801] +subset: human_subset +subset: mouse_subset synonym: "MARN" EXACT OMO:0003000 [MBA:307] xref: MBA:307 is_a: UBERON:0007635 ! nucleus of medulla oblongata @@ -400717,6 +425173,8 @@ id: UBERON:8440074 name: interstitial nucleus of the vestibular nerve def: "A cluster of large nerve cells distributed in the vestibular component of vestibulocochlear nerve fibers that functionally belong to the vestibulomotor regions of the behavioral control column." [NeuroNames:719] comment: Interstitial nucleus of the vestibular nerve is revealed in Nissl stained sections and stain for acetylcholinesterase. {xref="NeuroNames:719"} +subset: human_subset +subset: mouse_subset synonym: "INV" EXACT OMO:0003000 [MBA:76] synonym: "ISVe" EXACT OMO:0003000 [NeuroNames:719] xref: MBA:76 @@ -400730,6 +425188,8 @@ relationship: part_of UBERON:0002731 ! vestibulocochlear nerve root id: UBERON:8440075 name: gustatory cortex def: "The part of the cerebral cortex that is responsible for the perception of taste." [WikipediaVersioned:Gustatory_cortex&oldid=1048584788] +subset: human_subset +subset: mouse_subset synonym: "gustatory area" EXACT [MBA:1057] xref: MBA:1057 is_a: UBERON:0002616 ! regional part of brain @@ -400741,6 +425201,8 @@ relationship: part_of UBERON:0001033 ! gustatory system id: UBERON:8440076 name: somatomotor area def: "A part of the cerebral cortex that comprises of the primary motor cortex and the premotor cortex." [MBA:500] +subset: human_subset +subset: mouse_subset xref: MBA:500 is_a: UBERON:0002616 ! regional part of brain relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 @@ -400751,6 +425213,8 @@ relationship: has_part UBERON:0016634 ! premotor cortex id: UBERON:8440077 name: rhinal incisure def: "A fissure in the cerebral cortex that separates the tenia tecta rostrally from the orbital gyri and caudally from the infralimbic cortex" [NeuroNames:1975] +subset: human_subset +subset: mouse_subset xref: MBA:1078 is_a: UBERON:0000464 ! anatomical space relationship: adjacent_to UBERON:0007193 ! orbital gyrus @@ -400764,6 +425228,8 @@ relationship: present_in_taxon NCBITaxon:10114 {xref="NeuroNames:1975"} ! Rattus id: UBERON:8450001 name: egg follicle def: "An individual reproductive unit containing a single oocyte and one or several layers of support cells (Armstrong et al., 2020)." [DOI:10.1530/REP-18-0593] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0002-6095-8718 @@ -400776,6 +425242,8 @@ id: UBERON:8450002 name: excretory system def: "An anatomical system that eliminates waste products that arise as a result of metabolic activity." [GO:0007588] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: BTO:0006338 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0000467 ! anatomical system intersection_of: UBERON:0000467 ! anatomical system @@ -400785,10 +425253,25 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens created_by: http://orcid.org/0000-0002-6095-8718 creation_date: 2022-05-25T18:21:29Z +[Term] +id: UBERON:8450003 +name: embryonic craniocervical region +def: "A craniocervical region that is part of an embryo." [https://orcid.org/0000-0002-6095-8718] +subset: human_subset +subset: mouse_subset +is_a: UBERON:0007811 ! craniocervical region +intersection_of: UBERON:0007811 ! craniocervical region +intersection_of: part_of UBERON:0000922 ! embryo +relationship: dc-contributor https://orcid.org/0000-0002-6095-8718 +relationship: part_of UBERON:0000922 ! embryo +property_value: dcterms-date "2024-09-12T14:40:00Z" xsd:dateTime + [Term] id: UBERON:8470000 name: placental blood def: "Blood located in the placenta." [http://orcid.org/0000-0001-6595-0902, https://www.ncbi.nlm.nih.gov/books/NBK53254/] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000178 ! blood intersection_of: UBERON:0000178 ! blood intersection_of: located_in UBERON:0001987 ! placenta @@ -400799,6 +425282,8 @@ property_value: dcterms-date "2022-04-04T11:06:09Z" xsd:dateTime id: UBERON:8470001 name: sublumbar lymph node def: "A lymph node with a lymph center located within the caudal abdomen and pelvis, on the ventral side of the lumbar region. Includes the medial iliac, internal iliac (previously termed hypogastric) and sacral lymph nodes." [https://orcid.org/0000-0002-0819-0473, NCIT:C77655, PMID:32655159] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000029 ! lymph node property_value: dcterms-date "2022-05-26T11:59:51Z" xsd:dateTime @@ -400807,6 +425292,8 @@ id: UBERON:8470002 name: moderator band def: "A muscular trabecula in the right ventricle of the heart that connects the interventricular septum to the anterior wall and to the base of the anterior papillary muscle of the right ventricle." [https://doi.org/10.19080/APBIJ.2017.02.555595, https://orcid.org/0000-0001-7655-4833, PMID:20359929, PMID:22419933, PMID:30984450] comment: The morphology and structure of the septomarginal trabecula varies in different species. In humans, the septomarginal trabecula connects the interventricular septum with the anterior wall of the right ventricle at the base of the anterior papillary muscle. It is also present in non-human mammals where it stretches between the bases of the muscles papilaris subarteriosus and magnus. In some instances it carries the continuation of the right bundle branch of the conducting system of the heart. It is constituted of ordinary cardiac myocytes around and in between Purkinje myocytes. {xref="https://doi.org/10.19080/APBIJ.2017.02.555595", xref="PMID:20359929"} +subset: human_subset +subset: mouse_subset synonym: "septomarginal trabecula" EXACT [PMID:22419933] is_a: UBERON:0000440 ! trabecula is_a: UBERON:0004120 ! mesoderm-derived structure @@ -400817,6 +425304,8 @@ property_value: dcterms-date "2022-12-13T13:11:03Z" xsd:dateTime id: UBERON:8480000 name: iliac vein smooth muscle tissue def: "A portion of smooth muscle tissue that is part of an iliac vein." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004696 ! venous system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0005610 ! iliac vein @@ -400828,6 +425317,8 @@ property_value: dcterms-date "2022-06-17T14:34:50Z" xsd:dateTime id: UBERON:8480001 name: capillary of brain def: "A capillary that is part of the brain." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001982 ! capillary is_a: UBERON:0003499 ! brain blood vessel intersection_of: UBERON:0001982 ! capillary @@ -400840,6 +425331,8 @@ property_value: dcterms-date "2022-06-24T09:28:31Z" xsd:dateTime id: UBERON:8480002 name: thoracic aorta smooth muscle tissue def: "A portion of smooth muscle tissue that is part of the thoracic aorta." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004178 ! aorta smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001515 ! thoracic aorta @@ -400851,6 +425344,8 @@ property_value: dcterms-date "2022-06-24T09:30:54Z" xsd:dateTime id: UBERON:8480003 name: iliac artery smooth muscle tissue def: "A portion of smooth muscle tissue that is part of an iliac artery." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0002111 ! artery smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0005609 ! iliac artery @@ -400862,6 +425357,8 @@ property_value: dcterms-date "2022-06-24T09:32:07Z" xsd:dateTime id: UBERON:8480004 name: iliac vein endothelium def: "An endothelium that is part of an iliac vein." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001919 ! endothelium of vein intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0005610 ! iliac vein @@ -400873,6 +425370,8 @@ property_value: dcterms-date "2022-06-24T09:33:18Z" xsd:dateTime id: UBERON:8480005 name: placental artery endothelium def: "An endothelium that is part of the placental artery." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001917 ! endothelium of artery is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005292 ! extraembryonic tissue @@ -400886,6 +425385,8 @@ property_value: dcterms-date "2022-06-24T09:34:25Z" xsd:dateTime id: UBERON:8480006 name: mesenteric lymphatic vessel def: "Lymphatic vessel that is part of the mesentery." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001473 ! lymphatic vessel is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001473 ! lymphatic vessel @@ -400898,6 +425399,8 @@ property_value: dcterms-date "2022-06-24T09:35:29Z" xsd:dateTime id: UBERON:8480007 name: placental artery def: "An artery that is part of the placenta." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001637 ! artery is_a: UBERON:0022358 ! placenta blood vessel intersection_of: UBERON:0001637 ! artery @@ -400910,6 +425413,8 @@ property_value: dcterms-date "2022-06-24T11:25:24Z" xsd:dateTime id: UBERON:8480008 name: placental vein def: "A vein that is part of the placenta." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001638 ! vein is_a: UBERON:0022358 ! placenta blood vessel intersection_of: UBERON:0001638 ! vein @@ -400922,6 +425427,8 @@ property_value: dcterms-date "2022-06-27T09:30:52Z" xsd:dateTime id: UBERON:8480009 name: tendon of semitendinosus def: "A tendon that attaches to a semitendinosus." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset synonym: "semitendinosus tendon" EXACT [FMA:46930] is_a: UBERON:0000043 ! tendon intersection_of: UBERON:0000043 ! tendon @@ -400935,6 +425442,8 @@ property_value: dcterms-date "2022-09-15T07:47:19Z" xsd:dateTime id: UBERON:8480010 name: perianal space def: "An anatomical space located at the level of the anal orifice that is continuous with the ischioanal space laterally and superiorly and extends into the space between the external and internal sphincters." [https://www.ncbi.nlm.nih.gov/books/NBK535387/] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T10:36:29Z" xsd:dateTime @@ -400943,6 +425452,8 @@ property_value: dcterms-date "2022-07-05T10:36:29Z" xsd:dateTime id: UBERON:8480011 name: deep post-anal space def: "An anatomical space found at the front of the apex of the coccyx that is limited superiorly by the plate of the levator ani muscle and inferiorly by the anococcygeal raphe." [https://www.ncbi.nlm.nih.gov/books/NBK535387/] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T10:41:02Z" xsd:dateTime @@ -400951,6 +425462,8 @@ property_value: dcterms-date "2022-07-05T10:41:02Z" xsd:dateTime id: UBERON:8480012 name: intersphincteric space def: "An anatomical space located between the internal and external anal sphincters that continues inferiorly into the perianal space and superiorly into the rectum wall." [https://www.ncbi.nlm.nih.gov/books/NBK535387/] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000464 ! anatomical space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T10:43:20Z" xsd:dateTime @@ -400959,6 +425472,8 @@ property_value: dcterms-date "2022-07-05T10:43:20Z" xsd:dateTime id: UBERON:8480013 name: ischiorectal space def: "An anatomical space that extends from the levator ani muscle to the perineum lateral to the anal canal." [https://www.ncbi.nlm.nih.gov/books/NBK535387/] +subset: human_subset +subset: mouse_subset synonym: "ischioanal space" EXACT [https://www.ncbi.nlm.nih.gov/books/NBK535387/] is_a: UBERON:0000464 ! anatomical space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 @@ -400968,6 +425483,8 @@ property_value: dcterms-date "2022-07-05T10:46:32Z" xsd:dateTime id: UBERON:8480014 name: skin of buttock def: "A zone of skin that is part of the buttock." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001415 ! skin of pelvis intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0013691 ! buttock @@ -400979,6 +425496,8 @@ property_value: dcterms-date "2022-08-29T14:05:55Z" xsd:dateTime id: UBERON:8480015 name: supra levator space def: "An anatomical space limited superiorly by the peritoneum, laterally by the pelvic wall, medially by the rectal wall, and inferiorly by the levator ani muscle." [https://www.ncbi.nlm.nih.gov/books/NBK535387/] +subset: human_subset +subset: mouse_subset synonym: "pelvic-rectal space" EXACT [https://www.ncbi.nlm.nih.gov/books/NBK535387/] is_a: UBERON:0000464 ! anatomical space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 @@ -400988,6 +425507,8 @@ property_value: dcterms-date "2022-07-05T10:59:37Z" xsd:dateTime id: UBERON:8480016 name: perirenal space def: "A retroperitoneal space that lies between the anterior and posterior renal fascia; it is a paired inverted cone shaped of tissue containing the kidney, the proximal portion of the collecting system, renal and perirenal vasculature, perirenal lymphatics, adrenal glands and variable amount of fat." [PMID:24065628] +subset: human_subset +subset: mouse_subset synonym: "perinephric space" EXACT [PMID:28050791] is_a: UBERON:0003693 ! retroperitoneal space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 @@ -400997,6 +425518,8 @@ property_value: dcterms-date "2022-07-05T11:02:35Z" xsd:dateTime id: UBERON:8480017 name: anterior pararenal space def: "A space that is bounded anteriorly by the posterior parietal peritoneum, laterally by the lateroconal fascia and posteriorly by the anterior renal fascia; it contains the pancreatic gland, retroperitoneal segments of the duodenum, ascending and descending colon and the mesenteric root, as well as adipose tissue." [PMID:24065628] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003693 ! retroperitoneal space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T11:19:27Z" xsd:dateTime @@ -401005,6 +425528,8 @@ property_value: dcterms-date "2022-07-05T11:19:27Z" xsd:dateTime id: UBERON:8480018 name: posterior pararenal space def: "A space that is bound anteriorly by the posterior renal fascia and posteriorly by the transversalis fascia, and it only contains adipose tissue, lymphatics and blood vessels." [PMID:24065628] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003693 ! retroperitoneal space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T11:20:55Z" xsd:dateTime @@ -401013,6 +425538,8 @@ property_value: dcterms-date "2022-07-05T11:20:55Z" xsd:dateTime id: UBERON:8480019 name: perirectal space def: "An extraperitoneal space bounded laterally by the perirectal fascia, posteriorly by the posterior pelvic fascia, and anteriorly by the rectovesical fascia in the male and the rectovaginal fascia in the female." [PMID:26006061] +subset: human_subset +subset: mouse_subset is_a: UBERON:0014456 ! extraperitoneal space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T11:22:05Z" xsd:dateTime @@ -401021,6 +425548,8 @@ property_value: dcterms-date "2022-07-05T11:22:05Z" xsd:dateTime id: UBERON:8480020 name: perivesical space def: "An extraperitoneal space circumscribed by the umbilicovesical fascia anterior and laterally, and rectovaginal (in females) or rectovesical (in males) septum posteriorly, it encounters the urachus, obliterated umbilical vessels, urinary bladder and the lower uterine segment or seminal vesicles." [PMID:24065628] +subset: human_subset +subset: mouse_subset is_a: UBERON:0014456 ! extraperitoneal space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T11:28:46Z" xsd:dateTime @@ -401029,6 +425558,8 @@ property_value: dcterms-date "2022-07-05T11:28:46Z" xsd:dateTime id: UBERON:8480021 name: prevesical space def: "An extraperitoneal space anterior and lateral to the umbilicovesical fascia, and posterior to the trasversalis fascia. Prevesical space laterally communicates with the properitoneal space of the abdominal wall and flanks; posteroinferiorly it surrounds the lateral walls of the urinary bladder, and anteroinferiorly it forms the retropubic space (the space of Retzius)." [PMID:24065628] +subset: human_subset +subset: mouse_subset is_a: UBERON:0014456 ! extraperitoneal space relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2022-07-05T11:29:38Z" xsd:dateTime @@ -401037,6 +425568,8 @@ property_value: dcterms-date "2022-07-05T11:29:38Z" xsd:dateTime id: UBERON:8480022 name: piriform sinus def: "A recess on either side of the laryngeal orifice, which is bounded medially by the aryepiglottic fold, laterally by the thyroid cartilage and thyrohyoid membrane. The pyriform sinus is involved in speech." [https://en.wikipedia.org/wiki/Pyriform_sinus] +subset: human_subset +subset: mouse_subset synonym: "piriform fossa" EXACT [https://en.wikipedia.org/wiki/Pyriform_sinus] synonym: "piriform recess" EXACT [https://en.wikipedia.org/wiki/Pyriform_sinus] synonym: "pyriform fossa" EXACT [https://en.wikipedia.org/wiki/Pyriform_sinus] @@ -401051,6 +425584,8 @@ property_value: dcterms-date "2022-07-05T11:30:55Z" xsd:dateTime id: UBERON:8480023 name: skin of lateral lumbar region of abdomen def: "A zone of skin that is part of the lateral lumbar region of abdomen." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset synonym: "skin of flank" EXACT [] is_a: UBERON:0001416 ! skin of abdomen intersection_of: UBERON:0000014 ! zone of skin @@ -401063,6 +425598,8 @@ property_value: dcterms-date "2022-08-29T14:11:43Z" xsd:dateTime id: UBERON:8480024 name: skin of sacral region def: "A zone of skin that is part of the sacral region." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001415 ! skin of pelvis intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0005473 ! sacral region @@ -401074,6 +425611,8 @@ property_value: dcterms-date "2022-08-29T14:14:27Z" xsd:dateTime id: UBERON:8480025 name: skin of clavicle region def: "A zone of skin that is above the clavicle zone in the pectoral girdle region." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000014 ! zone of skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001421 ! pectoral girdle region @@ -401085,6 +425624,8 @@ property_value: dcterms-date "2022-08-29T14:17:12Z" xsd:dateTime id: UBERON:8480026 name: skin of iliac crest region def: "A zone of skin that is above the iliac crest in the pelvic girdle bone/zone." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset synonym: "skin of posterior iliac crest region" BROAD [] is_a: UBERON:0001415 ! skin of pelvis is_a: UBERON:0004120 ! mesoderm-derived structure @@ -401099,6 +425640,8 @@ id: UBERON:8480027 name: temple def: "The region where the frontal, parietal, temporal, and sphenoid bones fuse." [WikipediaVersioned:Temple_(anatomy)&oldid=1104547137] comment: This term does not refer to the "gena" of insects, which temple in that instance is a synonym (listed here: http://portal.hymao.org/projects/32/public/ontology_class/show_expanded/482). +subset: human_subset +subset: mouse_subset synonym: "temple region" EXACT [http://orcid.org/0000-0002-0819-0473] is_a: UBERON:0000061 ! anatomical structure relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 @@ -401110,6 +425653,8 @@ property_value: dcterms-date "2022-08-29T14:32:57Z" xsd:dateTime id: UBERON:8480028 name: skin of temple def: "A zone of skin that is part of the temple." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001084 ! skin of head intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:8480027 ! temple @@ -401121,6 +425666,8 @@ property_value: dcterms-date "2022-08-30T06:46:55Z" xsd:dateTime id: UBERON:8480029 name: skin of external genitalia def: "A zone of skin that is part of the external genitalia." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000014 ! zone of skin @@ -401133,6 +425680,8 @@ property_value: dcterms-date "2022-08-30T06:55:06Z" xsd:dateTime id: UBERON:8480030 name: skin of breast def: "A zone of skin that is part of the breast." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001868 ! skin of chest intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000310 ! breast @@ -401144,6 +425693,8 @@ property_value: dcterms-date "2022-08-29T14:03:54Z" xsd:dateTime id: UBERON:8480031 name: tooth root apical papilla def: "The portion of the dental papilla located at the apex of the root of developing permanent tooth that is responsible for the progressive elongation and maturation of the root tooth." [PMID:18498881, PMID:34026757] +subset: human_subset +subset: mouse_subset synonym: "apical papilla" EXACT [PMID:18215674] synonym: "apical papilla of immature permanent teeth" EXACT [PMID:30834270] is_a: UBERON:0000479 ! tissue @@ -401156,6 +425707,8 @@ property_value: editor_note "The surface layer is formed by a dense collagen mat id: UBERON:8480032 name: neck of pancreas def: "The portion of the pancreas that connects the head of pancreas and the body of pancreas." [NCIT:C158551] +subset: human_subset +subset: mouse_subset synonym: "neck of the pancreas" EXACT [NCIT:C158551] synonym: "pancreatic neck" EXACT [FMA:14517] is_a: UBERON:0000064 ! organ part @@ -401169,6 +425722,8 @@ property_value: dcterms-date "2023-12-21T09:57:11Z" xsd:dateTime id: UBERON:8480033 name: interlobular stroma of mammary gland def: "The interlobular stroma of the mammary gland lobule separates the lobules and intralobular stroma from any substantial direct contact with the adipose tissue. It is more compact than the intralobular stroma." [PMID:18710550] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003584 ! mammary gland connective tissue relationship: adjacent_to UBERON:8480034 ! intralobular stroma of mammary gland relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 @@ -401178,6 +425733,8 @@ property_value: dcterms-date "2022-10-03T14:21:47Z" xsd:dateTime id: UBERON:8480034 name: intralobular stroma of mammary gland def: "The intralobular stroma of the mammary gland lobule contains loosely connected fibroblasts. It is surrounded by the more compact interlobular stroma." [PMID:18710550] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003584 ! mammary gland connective tissue relationship: composed_primarily_of CL:0000057 ! fibroblast relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 @@ -401188,6 +425745,8 @@ id: UBERON:8480035 name: cervical transformation zone epithelium def: "The area of epithelium that lies between the native and unaffected columnar epithelium of the endocervical canal and the native squamous epithelium deriving from the vaginal and ectocervical squamous epithelium." [https://www.ncbi.nlm.nih.gov/books/NBK568392/] comment: Before puberty and after menopause the transformation zone resides in the cervical canal. During the reproductive age of the woman it is located just outside the external os. Squamous cervical cancer originates in the transition zone. Glandular cervical cancer originates in either the transformation zone or the glandular epithelium above the transformation zone. The cervical transformation zone epithelium is an area where squamous metaplasia occurs. {xref="PMID:28639968", xref="PMID:10728686"} +subset: human_subset +subset: mouse_subset synonym: "cervical transformation zone" BROAD [PMID:29944714] synonym: "cervix transition zone" BROAD [PMID:28932806] synonym: "transformation (transitional) zone" BROAD [https://myhealth.alberta.ca/Health/Pages/conditions.aspx?hwid=stt11635] @@ -401201,6 +425760,8 @@ property_value: dcterms-date "2022-11-29T14:10:04Z" xsd:dateTime id: UBERON:8480036 name: posterior wall of the glottis def: "Part of the glottis most closely associated with the pharynx represented anatomically by the posterior union of the developing cricoid cartilage." [PMID:19501483, PMID:25272366] +subset: human_subset +subset: mouse_subset synonym: "larynx posterior commissure" RELATED [PMID:25272366] synonym: "posterior commissure of larynx" RELATED [PMID:25272366] synonym: "posterior end of the glottis" EXACT [PMID:19501483] @@ -401217,6 +425778,8 @@ property_value: dcterms-date "2022-12-07T08:52:45Z" xsd:dateTime id: UBERON:8480037 name: subserosa of fallopian tube def: "Subserosa that is part of the uterine tube. It contains loose connective tissue, blood vessels and lymphatic tissue." [ISBN:9783662026762, PMID:30095490] +subset: human_subset +subset: mouse_subset synonym: "subserosa of oviduct" EXACT [PMID:34440264] synonym: "subserosa of uterine tube" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure @@ -401279,6 +425842,8 @@ property_value: dcterms-date "2022-11-22T09:21:36Z" xsd:dateTime id: UBERON:8480042 name: menstrual fluid def: "Fluid that consists of necrotic and shed endometrial tissue and blood from mucosal vessels discharged during the reproductive years approximately once a month." [ISBN:0781750563] +subset: human_subset +subset: mouse_subset synonym: "menstrual blood" RELATED [https://en.wikipedia.org/wiki/Menstruation] is_a: UBERON:0006314 ! bodily fluid relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 @@ -401288,6 +425853,8 @@ property_value: dcterms-date "2022-12-13T12:30:22Z" xsd:dateTime id: UBERON:8480043 name: pelvic wall def: "The tissues that surround the organs that are present within the pelvic region of the trunk. The walls of the pelvis are formed by bones and ligaments that are partly lined with muscles covered with fascia and parietal peritoneum." [ISBN:1451110324] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000060 ! anatomical wall relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0002355 ! pelvic region of trunk @@ -401297,6 +425864,8 @@ property_value: dcterms-date "2022-12-15T13:57:29Z" xsd:dateTime id: UBERON:8480044 name: long bone cartilage element def: "A skeletal element that is part of a long bone and composed of cartilage tissue." [FMA:32676, https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset synonym: "long bone cartilage" EXACT [PMID:33169221] is_a: UBERON:0007844 ! cartilage element relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 @@ -401307,6 +425876,8 @@ property_value: dcterms-date "2023-01-18T07:04:30Z" xsd:dateTime id: UBERON:8480045 name: subiliac lymph node def: "A lymph node located inferior to the ilium." [NCIT:C92594] +subset: human_subset +subset: mouse_subset synonym: "subiliac lymphocenter" BROAD [https://dr.lib.iastate.edu/handle/20.500.12876/46336] xref: FMA:323407 is_a: UBERON:0015877 ! parietal pelvic lymph node @@ -401328,6 +425899,8 @@ property_value: dcterms-date "2023-02-08T08:53:48Z" xsd:dateTime id: UBERON:8480047 name: retroauricular region def: "The retroauricular region is the area located behind the auricle of the outer ear." [http://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset synonym: "retro-auricular area" EXACT [PMID:22592943] synonym: "retro-auricular part of head" EXACT [FMA:322167] synonym: "retro-auricular region" EXACT [PMID:33988139] @@ -401342,6 +425915,8 @@ property_value: dcterms-date "2023-02-09T09:39:18Z" xsd:dateTime id: UBERON:8480048 name: calf def: "The posterior aspect of the lower extremity that extends from the knee to the foot." [NCIT:C93027] +subset: human_subset +subset: mouse_subset synonym: "calf of leg" EXACT [FMA:24984] synonym: "posterior curral region" EXACT [FMA:24984] synonym: "posterior leg region" EXACT [FMA:24984] @@ -401361,6 +425936,8 @@ property_value: dcterms-date "2023-02-27T19:56:29Z" xsd:dateTime id: UBERON:8480049 name: front hindlimb zeugopod def: "The frontal aspect of the lower extremity that extends from the knee to the foot." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset synonym: "anterior crural region" EXACT [FMA:24985] synonym: "anterior leg region" EXACT [FMA:24985] synonym: "anterior region of leg" EXACT [FMA:24985] @@ -401377,6 +425954,8 @@ property_value: dcterms-date "2023-02-27T20:12:17Z" xsd:dateTime id: UBERON:8480050 name: skin of calf def: "Skin of the back of the lower leg." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset synonym: "skin of posterior part of leg" EXACT [FMA:37840] xref: FMA:37840 is_a: UBERON:0004264 ! lower leg skin @@ -401388,6 +425967,8 @@ property_value: dcterms-date "2023-02-27T20:17:12Z" xsd:dateTime id: UBERON:8480051 name: thoracolumbar junction def: "Area of transition between the posterior curvature of the thoracic spine and the anterior curvature of the lumbar spine." [PMID:29399115] +subset: human_subset +subset: mouse_subset synonym: "thora-columbar junction" EXACT [PMID:27441179] is_a: UBERON:0000064 ! organ part relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 @@ -401398,6 +425979,8 @@ property_value: dcterms-date "2023-04-26T07:26:56Z" xsd:dateTime id: UBERON:8480052 name: skin of thoracolumbar junction def: "A zone of skin that is part of the thoracolumbar junction." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001068 ! skin of back relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:8480051 ! thoracolumbar junction @@ -401407,6 +425990,8 @@ property_value: dcterms-date "2023-04-26T07:45:34Z" xsd:dateTime id: UBERON:8480053 name: skin of umbilical area def: "A zone of skin that is part of the umbilicus and the periumbilical region." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0001416 ! skin of abdomen relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0000916 ! abdomen @@ -401416,6 +426001,8 @@ property_value: dcterms-date "2023-04-26T07:54:47Z" xsd:dateTime id: UBERON:8480054 name: ileocecal lymph node def: "Mesenteric lymph node embedded in the ileocecal fold at both sides of the concavity of the cecum. It drains the terminal ileum." [PMID:15493265, PMID:18251298] +subset: human_subset +subset: mouse_subset synonym: "ileocaecal lymph node" EXACT [PMID:15493265] is_a: UBERON:0002509 ! mesenteric lymph node relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 @@ -401426,6 +426013,8 @@ property_value: dcterms-date "2023-05-11T12:09:21Z" xsd:dateTime id: UBERON:8480055 name: subcarinal lymph node def: "Superior mediastinal lymph node located in the thoracic cavity between the lungs. It is bordered by the carina of the trachea, the lower lobe bronchus on the left and the intermediate bronchus on the right." [NCIT:C117873, PMID:30422458] +subset: human_subset +subset: mouse_subset synonym: "left subcarinal lymph node" NARROW [PMID:36899970] synonym: "subcarinal node" EXACT [PMID:30422458] is_a: UBERON:0038651 ! superior mediastinal lymph node @@ -401437,6 +426026,8 @@ property_value: dcterms-date "2023-05-11T12:12:47Z" xsd:dateTime id: UBERON:8480056 name: left supraclavicular lymph node def: "Supraclavicular lymph node located on the left side of a entire appendicular skeleton. The left supraclavicular lymph node drains the kidney, cervix, testis, and pancreas into the thoracic duct." [PMID:31335020] +subset: human_subset +subset: mouse_subset is_a: UBERON:0035279 ! supraclavicular lymph node relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2023-05-11T12:20:06Z" xsd:dateTime @@ -401445,6 +426036,8 @@ property_value: dcterms-date "2023-05-11T12:20:06Z" xsd:dateTime id: UBERON:8480057 name: right supraclavicular lymph node def: "Supraclavicular lymph node located on the right side of a entire appendicular skeleton. The right supraclavicular lymph node drains the breast, lung and upper esophagus into the right lymphatic duct." [PMID:31335020] +subset: human_subset +subset: mouse_subset is_a: UBERON:0035279 ! supraclavicular lymph node relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2023-05-11T12:22:02Z" xsd:dateTime @@ -401453,6 +426046,8 @@ property_value: dcterms-date "2023-05-11T12:22:02Z" xsd:dateTime id: UBERON:8480058 name: Virchow's lymph node def: "Lymph node that is the most proximal of the left supraclavicular lymph nodes. It receives afferent lymphatic drainage from the left head, neck, chest, abdomen, pelvis, and bilateral lower extremities, and drains into the jugulo-subclavian venous junction via the thoracic duct." [PMID:31335020, PMID:32310560] +subset: human_subset +subset: mouse_subset synonym: "Troisier sign" RELATED [PMID:32310560] synonym: "Virchow's node" EXACT [PMID:32310560] is_a: UBERON:8480056 ! left supraclavicular lymph node @@ -401463,6 +426058,8 @@ property_value: dcterms-date "2023-05-11T12:23:20Z" xsd:dateTime id: UBERON:8480059 name: perigastric lymph node def: "Lymph node located in the perigastric region." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset synonym: "paragastric lymph node" RELATED [PMID:3172586] synonym: "peri-gastric lymph node" EXACT [PMID:28447049] synonym: "peri-gastric node" EXACT [PMID:28447049] @@ -401476,6 +426073,8 @@ property_value: dcterms-date "2023-05-11T12:28:12Z" xsd:dateTime id: UBERON:8480060 name: paraspinal region def: "The region of the body adjacent to the vertebral column." [NCIT:C166000] +subset: human_subset +subset: mouse_subset synonym: "paraspinal" EXACT [NCIT:C129461] is_a: UBERON:0000154 ! posterior region of body relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 @@ -401486,6 +426085,8 @@ property_value: dcterms-date "2023-05-16T06:37:51Z" xsd:dateTime id: UBERON:8480061 name: pericardial region def: "The region of the body adjacent to the pericardium and heart." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0009569 ! subdivision of trunk relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2023-05-16T06:47:28Z" xsd:dateTime @@ -401494,6 +426095,8 @@ property_value: dcterms-date "2023-05-16T06:47:28Z" xsd:dateTime id: UBERON:8480062 name: femoral head cartilage def: "A hyaline articular cartilage that covers the head of femur. Provides cushioning, softness and low friction for the hip joint." [PMID:29262200, PMID:36292459] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004266 ! upper leg connective tissue is_a: UBERON:0007391 ! pelvic appendage cartilage tissue is_a: UBERON:0010996 ! articular cartilage of joint @@ -401506,6 +426109,8 @@ property_value: dcterms-date "2023-05-30T06:34:18Z" xsd:dateTime id: UBERON:8480063 name: dorsal iris def: "The dorsal part of the iris. In urodeles (newts and salamanders) the dorsal iris is involved in lens regeneration in a process named Wolffian lens regeneration." [PMID:17030116, PMID:29579253] +subset: human_subset +subset: mouse_subset synonym: "dorsal rim of the iris" EXACT [PMID:29579253] is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure @@ -401519,6 +426124,8 @@ property_value: dcterms-date "2023-06-06T08:06:04Z" xsd:dateTime id: UBERON:8480064 name: secretory coil of eccrine sweat gland def: "Tightly coiled tubule whose function is the production of sweat. The secretory tubule has three types of cells: clear, dark, and myoepithelial." [PMID:31608304, PMID:34395417] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0010371 ! ecto-epithelium relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 @@ -401529,6 +426136,8 @@ property_value: dcterms-date "2023-06-08T06:48:01Z" xsd:dateTime id: UBERON:8480065 name: labial gland def: "The labial gland is one of the minor salivary glands, located mainly under the mucosal epithelium of the upper and lower lip and within the orbicularis oris muscle fibers. The labial gland secrete mucous and serous substances to maintain oral health. In particular, the inferior labial gland not only promotes moisturization in the oral cavity but also secretes substances with antibacterial effects." [PMID:34422599] +subset: human_subset +subset: mouse_subset synonym: "labial minor salivary gland" EXACT [PMID:34274288] synonym: "labial salivary gland" EXACT [FMA:59792, NCIT:C32904] xref: BTO:0001548 @@ -401540,6 +426149,8 @@ property_value: dcterms-date "2023-06-19T12:41:05Z" xsd:dateTime id: UBERON:8480066 name: interscapular region def: "The region in the upper part of the back between the shoulder blades." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000475 ! organism subdivision relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0001137 ! dorsum @@ -401549,6 +426160,8 @@ property_value: dcterms-date "2023-06-23T09:06:25Z" xsd:dateTime id: UBERON:8480067 name: bone marrow microvessel def: "Microvessel located in the bone marrow, including arterioles and sinusoids." [PMID:32286470] +subset: human_subset +subset: mouse_subset is_a: UBERON:8410081 ! blood microvessel relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: located_in UBERON:0002371 ! bone marrow @@ -401558,6 +426171,8 @@ property_value: dcterms-date "2023-06-26T13:48:30Z" xsd:dateTime id: UBERON:8480068 name: saphenous vein smooth muscle tissue def: "A portion of smooth muscle tissue that is part of a saphenous vein." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004696 ! venous system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0007318 ! saphenous vein @@ -401570,6 +426185,8 @@ id: UBERON:8480069 name: temporofacial region def: "The region at each side of the face comprising the temple and the cheek." [PMID:28448262] comment: This term is used to map the tissue from which the Muraoka cell line (CVCL_E042) originates. {xref="PMID:1357816"} +subset: human_subset +subset: mouse_subset is_a: UBERON:0001444 ! subdivision of head relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: overlaps UBERON:0001456 ! face @@ -401579,6 +426196,8 @@ property_value: dcterms-date "2023-09-18T06:03:43Z" xsd:dateTime id: UBERON:8480070 name: lateral wall of nasal cavity def: "An anatomical wall that surrounds the nasal cavity. The lateral walls of the nasal cavity are spiral shaped mucosal folds that overlie the turbinate and sinus ducts draining into the ostia." [PMID:31334952] +subset: human_subset +subset: mouse_subset synonym: "lateral wall of the nose" EXACT [NCIT:C160988] synonym: "nasal lateral wall" EXACT [NCIT:C160988] is_a: UBERON:0000060 ! anatomical wall @@ -401590,6 +426209,7 @@ property_value: dcterms-date "2024-01-05T14:21:31Z" xsd:dateTime id: UBERON:8480071 name: skin of lobe of tail def: "A zone of skin that is part of the lobe tail." [https://orcid.org/0000-0002-0819-0473] +subset: mouse_subset synonym: "fluke skin" NARROW [PMID:21959845] is_a: UBERON:0003534 ! tail skin intersection_of: UBERON:0000014 ! zone of skin @@ -401602,6 +426222,8 @@ property_value: dcterms-date "2023-08-29T09:37:23Z" xsd:dateTime id: UBERON:8480072 name: skin of shin def: "A zone of skin on the front hindlimb zeugopod." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004264 ! lower leg skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:8480049 ! front hindlimb zeugopod @@ -401613,6 +426235,8 @@ property_value: dcterms-date "2023-08-29T09:47:32Z" xsd:dateTime id: UBERON:8480073 name: skin of scapula region def: "A zone of skin that is above the scapula in the upper back region." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0009015 ! upper back skin relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2023-08-29T09:53:33Z" xsd:dateTime @@ -401621,6 +426245,8 @@ property_value: dcterms-date "2023-08-29T09:53:33Z" xsd:dateTime id: UBERON:8480074 name: skin of gonad def: "A zone of skin part of some gonad." [https://orcid.org/0000-0002-0819-0473] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000014 ! zone of skin @@ -401633,6 +426259,8 @@ property_value: dcterms-date "2023-08-29T10:24:24Z" xsd:dateTime id: UBERON:8490000 name: right upper third secondary molar tooth def: "A upper third secondary molar tooth that is in the right side of the upper jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 1" EXACT [] synonym: "FDI tooth 18" EXACT [] synonym: "right upper third secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55696] @@ -401649,6 +426277,8 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490001 name: right upper second secondary molar tooth def: "A upper second secondary molar tooth that is in the right side of the upper jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 2" EXACT [] synonym: "FDI tooth 17" EXACT [] synonym: "right upper second secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55697] @@ -401665,6 +426295,8 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490002 name: right upper first secondary molar tooth def: "A upper first secondary molar tooth that is in the right side of the upper jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 3" EXACT [] synonym: "FDI tooth 16" EXACT [] synonym: "right upper first secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55698] @@ -401681,6 +426313,7 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490003 name: right upper second secondary premolar tooth def: "A upper second secondary premolar tooth that is in the right side of the upper jaw region." [] +subset: human_subset synonym: "ADA tooth 4" EXACT [] synonym: "FDI tooth 15" EXACT [] synonym: "right upper second secondary premolar tooth" EXACT HUMAN_PREFERRED [FMA:55688] @@ -401697,6 +426330,7 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490004 name: right upper first secondary premolar tooth def: "A upper first secondary premolar tooth that is in the right side of the upper jaw region." [] +subset: human_subset synonym: "ADA tooth 5" EXACT [] synonym: "FDI tooth 14" EXACT [] synonym: "right upper first secondary premolar tooth" EXACT HUMAN_PREFERRED [FMA:55689] @@ -401713,6 +426347,7 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490005 name: right upper secondary canine tooth def: "A upper secondary canine tooth that is in the right side of the upper jaw region." [] +subset: human_subset synonym: "ADA tooth 6" EXACT [] synonym: "FDI tooth 13" EXACT [] synonym: "right upper secondary canine tooth" EXACT HUMAN_PREFERRED [FMA:55798] @@ -401729,6 +426364,8 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490006 name: right upper lateral secondary incisor tooth def: "A upper lateral secondary incisor tooth that is in the right side of the upper jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 7" EXACT [] synonym: "FDI tooth 12" EXACT [] synonym: "right upper lateral secondary incisor tooth" EXACT HUMAN_PREFERRED [FMA:55680] @@ -401744,6 +426381,8 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490007 name: right upper central secondary incisor tooth def: "A upper central secondary incisor tooth that is in the right side of the upper jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 8" EXACT [] synonym: "FDI tooth 11" EXACT [] synonym: "right upper central secondary incisor tooth" EXACT HUMAN_PREFERRED [FMA:55681] @@ -401760,6 +426399,8 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490008 name: right lower third secondary molar tooth def: "A lower third secondary molar tooth that is in the right side of the lower jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 32" EXACT [] synonym: "FDI tooth 48" EXACT [] synonym: "right lower third secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55707] @@ -401776,6 +426417,8 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490009 name: right lower second secondary molar tooth def: "A lower second secondary molar tooth that is in the right side of the lower jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 31" EXACT [] synonym: "FDI tooth 47" EXACT [] synonym: "right lower second secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55706] @@ -401792,6 +426435,8 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490010 name: right lower first secondary molar tooth def: "A lower first secondary molar tooth that is in the right side of the lower jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 30" EXACT [] synonym: "FDI tooth 46" EXACT [] synonym: "right lower first secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55705] @@ -401808,6 +426453,7 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490011 name: right lower second secondary premolar tooth def: "A lower second secondary premolar tooth that is in the right side of the lower jaw region." [] +subset: human_subset synonym: "ADA tooth 29" EXACT [] synonym: "FDI tooth 45" EXACT [] synonym: "right lower second secondary premolar tooth" EXACT HUMAN_PREFERRED [FMA:55695] @@ -401824,6 +426470,7 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490012 name: right lower first secondary premolar tooth def: "A lower first secondary premolar tooth that is in the right side of the lower jaw region." [] +subset: human_subset synonym: "ADA tooth 28" EXACT [] synonym: "FDI tooth 44" EXACT [] synonym: "right lower first secondary premolar tooth" EXACT HUMAN_PREFERRED [FMA:55694] @@ -401840,6 +426487,7 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490013 name: right lower secondary canine tooth def: "A lower secondary canine tooth that is in the right side of the lower jaw region." [] +subset: human_subset synonym: "ADA tooth 27" EXACT [] synonym: "FDI tooth 43" EXACT [] synonym: "right lower secondary canine tooth" EXACT HUMAN_PREFERRED [FMA:55686] @@ -401856,6 +426504,8 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490014 name: right lower lateral secondary incisor tooth def: "A lower lateral secondary incisor tooth that is in the right side of the lower jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 26" EXACT [] synonym: "FDI tooth 42" EXACT [] synonym: "right lower lateral secondary incisor tooth" EXACT HUMAN_PREFERRED [FMA:57140] @@ -401871,6 +426521,8 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490015 name: right lower central secondary incisor tooth def: "A lower central secondary incisor tooth that is in the right side of the lower jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 25" EXACT [] synonym: "FDI tooth 41" EXACT [] synonym: "right lower central secondary incisor tooth" EXACT HUMAN_PREFERRED [FMA:57142] @@ -401887,6 +426539,8 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490016 name: right upper second primary molar tooth def: "A upper second primary molar tooth that is in the right side of the upper jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth A" EXACT [] synonym: "FDI tooth 55" EXACT [] synonym: "right upper second primary molar tooth" EXACT HUMAN_PREFERRED [FMA:84240] @@ -401903,6 +426557,8 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490017 name: right upper first primary molar tooth def: "A upper first primary molar tooth that is in the right side of the upper jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth B" EXACT [] synonym: "FDI tooth 54" EXACT [] synonym: "right upper first primary molar tooth" EXACT HUMAN_PREFERRED [FMA:84238] @@ -401919,6 +426575,7 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490018 name: right upper primary canine tooth def: "A upper primary canine tooth that is in the right side of the upper jaw region." [] +subset: human_subset synonym: "ADA tooth C" EXACT [] synonym: "FDI tooth 53" EXACT [] synonym: "right upper primary canine tooth" EXACT HUMAN_PREFERRED [FMA:84230] @@ -401935,6 +426592,8 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490019 name: right upper lateral primary incisor tooth def: "A upper lateral primary incisor tooth that is in the right side of the upper jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth D" EXACT [] synonym: "FDI tooth 52" EXACT [] synonym: "right upper lateral primary incisor tooth" EXACT HUMAN_PREFERRED [FMA:84222] @@ -401950,6 +426609,8 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490020 name: right upper central primary incisor tooth def: "A upper central primary incisor tooth that is in the right side of the upper jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth E" EXACT [] synonym: "FDI tooth 51" EXACT [] synonym: "right upper central primary incisor tooth" EXACT HUMAN_PREFERRED [FMA:84220] @@ -401966,6 +426627,8 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490021 name: right lower second primary molar tooth def: "A lower second primary molar tooth that is in the right side of the lower jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth T" EXACT [] synonym: "FDI tooth 85" EXACT [] synonym: "right lower second primary molar tooth" EXACT HUMAN_PREFERRED [FMA:84244] @@ -401982,6 +426645,8 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490022 name: right lower first primary molar tooth def: "A lower first primary molar tooth that is in the right side of the lower jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth S" EXACT [] synonym: "FDI tooth 84" EXACT [] synonym: "right lower first primary molar tooth" EXACT HUMAN_PREFERRED [FMA:84242] @@ -401998,6 +426663,7 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490023 name: right lower primary canine tooth def: "A lower primary canine tooth that is in the right side of the lower jaw region." [] +subset: human_subset synonym: "ADA tooth R" EXACT [] synonym: "FDI tooth 83" EXACT [] synonym: "right lower primary canine tooth" EXACT HUMAN_PREFERRED [FMA:84232] @@ -402014,6 +426680,8 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490024 name: right lower lateral primary incisor tooth def: "A lower lateral primary incisor tooth that is in the right side of the lower jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth Q" EXACT [] synonym: "FDI tooth 82" EXACT [] synonym: "right lower lateral primary incisor tooth" EXACT HUMAN_PREFERRED [FMA:84226] @@ -402029,6 +426697,8 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490025 name: right lower central primary incisor tooth def: "A lower central primary incisor tooth that is in the right side of the lower jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth P" EXACT [] synonym: "FDI tooth 81" EXACT [] synonym: "right lower central primary incisor tooth" EXACT HUMAN_PREFERRED [FMA:84224] @@ -402045,6 +426715,8 @@ creation_date: 2022-11-13T00:00:00Z id: UBERON:8490026 name: left upper third secondary molar tooth def: "A upper third secondary molar tooth that is in the left side of the upper jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 16" EXACT [] synonym: "FDI tooth 28" EXACT [] synonym: "left upper third secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55701] @@ -402061,6 +426733,8 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490027 name: left upper second secondary molar tooth def: "A upper second secondary molar tooth that is in the left side of the upper jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 15" EXACT [] synonym: "FDI tooth 27" EXACT [] synonym: "left upper second secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55700] @@ -402077,6 +426751,8 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490028 name: left upper first secondary molar tooth def: "A upper first secondary molar tooth that is in the left side of the upper jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 14" EXACT [] synonym: "FDI tooth 26" EXACT [] synonym: "left upper first secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55699] @@ -402093,6 +426769,7 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490029 name: left upper second secondary premolar tooth def: "A upper second secondary premolar tooth that is in the left side of the upper jaw region." [] +subset: human_subset synonym: "ADA tooth 13" EXACT [] synonym: "FDI tooth 25" EXACT [] synonym: "left upper second secondary premolar tooth" EXACT HUMAN_PREFERRED [FMA:55691] @@ -402109,6 +426786,7 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490030 name: left upper first secondary premolar tooth def: "A upper first secondary premolar tooth that is in the left side of the upper jaw region." [] +subset: human_subset synonym: "ADA tooth 12" EXACT [] synonym: "FDI tooth 24" EXACT [] synonym: "left upper first secondary premolar tooth" EXACT HUMAN_PREFERRED [FMA:55690] @@ -402125,6 +426803,7 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490031 name: left upper secondary canine tooth def: "A upper secondary canine tooth that is in the left side of the upper jaw region." [] +subset: human_subset synonym: "ADA tooth 11" EXACT [] synonym: "FDI tooth 23" EXACT [] synonym: "left upper secondary canine tooth" EXACT HUMAN_PREFERRED [FMA:55799] @@ -402141,6 +426820,8 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490032 name: left upper lateral secondary incisor tooth def: "A upper lateral secondary incisor tooth that is in the left side of the upper jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 10" EXACT [] synonym: "FDI tooth 22" EXACT [] synonym: "left upper lateral secondary incisor tooth" EXACT HUMAN_PREFERRED [FMA:55683] @@ -402156,6 +426837,8 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490033 name: left upper central secondary incisor tooth def: "A upper central secondary incisor tooth that is in the left side of the upper jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 9" EXACT [] synonym: "FDI tooth 21" EXACT [] synonym: "left upper central secondary incisor tooth" EXACT HUMAN_PREFERRED [FMA:55682] @@ -402172,6 +426855,8 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490034 name: left lower third secondary molar tooth def: "A lower third secondary molar tooth that is in the left side of the lower jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 17" EXACT [] synonym: "FDI tooth 38" EXACT [] synonym: "left lower third secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55702] @@ -402188,6 +426873,8 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490035 name: left lower second secondary molar tooth def: "A lower second secondary molar tooth that is in the left side of the lower jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 18" EXACT [] synonym: "FDI tooth 37" EXACT [] synonym: "left lower second secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55703] @@ -402204,6 +426891,8 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490036 name: left lower first secondary molar tooth def: "A lower first secondary molar tooth that is in the left side of the lower jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 19" EXACT [] synonym: "FDI tooth 36" EXACT [] synonym: "left lower first secondary molar tooth" EXACT HUMAN_PREFERRED [FMA:55704] @@ -402220,6 +426909,7 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490037 name: left lower second secondary premolar tooth def: "A lower second secondary premolar tooth that is in the left side of the lower jaw region." [] +subset: human_subset synonym: "ADA tooth 20" EXACT [] synonym: "FDI tooth 35" EXACT [] synonym: "left lower second secondary premolar tooth" EXACT HUMAN_PREFERRED [FMA:55692] @@ -402236,6 +426926,7 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490038 name: left lower first secondary premolar tooth def: "A lower first secondary premolar tooth that is in the left side of the lower jaw region." [] +subset: human_subset synonym: "ADA tooth 21" EXACT [] synonym: "FDI tooth 34" EXACT [] synonym: "left lower first secondary premolar tooth" EXACT HUMAN_PREFERRED [FMA:55693] @@ -402252,6 +426943,7 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490039 name: left lower secondary canine tooth def: "A lower secondary canine tooth that is in the left side of the lower jaw region." [] +subset: human_subset synonym: "ADA tooth 22" EXACT [] synonym: "FDI tooth 33" EXACT [] synonym: "left lower secondary canine tooth" EXACT HUMAN_PREFERRED [FMA:55687] @@ -402268,6 +426960,8 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490040 name: left lower lateral secondary incisor tooth def: "A lower lateral secondary incisor tooth that is in the left side of the lower jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 23" EXACT [] synonym: "FDI tooth 32" EXACT [] synonym: "left lower lateral secondary incisor tooth" EXACT HUMAN_PREFERRED [FMA:57141] @@ -402283,6 +426977,8 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490041 name: left lower central secondary incisor tooth def: "A lower central secondary incisor tooth that is in the left side of the lower jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth 24" EXACT [] synonym: "FDI tooth 31" EXACT [] synonym: "left lower central secondary incisor tooth" EXACT HUMAN_PREFERRED [FMA:57143] @@ -402299,6 +426995,8 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490042 name: left upper second primary molar tooth def: "A upper second primary molar tooth that is in the left side of the upper jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth J" EXACT [] synonym: "FDI tooth 65" EXACT [] synonym: "left upper second primary molar tooth" EXACT HUMAN_PREFERRED [FMA:84241] @@ -402315,6 +427013,8 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490043 name: left upper first primary molar tooth def: "A upper first primary molar tooth that is in the left side of the upper jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth I" EXACT [] synonym: "FDI tooth 64" EXACT [] synonym: "left upper first primary molar tooth" EXACT HUMAN_PREFERRED [FMA:84239] @@ -402331,6 +427031,7 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490044 name: left upper primary canine tooth def: "A upper primary canine tooth that is in the left side of the upper jaw region." [] +subset: human_subset synonym: "ADA tooth H" EXACT [] synonym: "FDI tooth 63" EXACT [] synonym: "left upper primary canine tooth" EXACT HUMAN_PREFERRED [FMA:84231] @@ -402347,6 +427048,8 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490045 name: left upper lateral primary incisor tooth def: "A upper lateral primary incisor tooth that is in the left side of the upper jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth G" EXACT [] synonym: "FDI tooth 62" EXACT [] synonym: "left upper lateral primary incisor tooth" EXACT HUMAN_PREFERRED [FMA:84223] @@ -402362,6 +427065,8 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490046 name: left upper central primary incisor tooth def: "A upper central primary incisor tooth that is in the left side of the upper jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth F" EXACT [] synonym: "FDI tooth 61" EXACT [] synonym: "left upper central primary incisor tooth" EXACT HUMAN_PREFERRED [FMA:84221] @@ -402378,6 +427083,8 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490047 name: left lower second primary molar tooth def: "A lower second primary molar tooth that is in the left side of the lower jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth K" EXACT [] synonym: "FDI tooth 75" EXACT [] synonym: "left lower second primary molar tooth" EXACT HUMAN_PREFERRED [FMA:84245] @@ -402394,6 +427101,8 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490048 name: left lower first primary molar tooth def: "A lower first primary molar tooth that is in the left side of the lower jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth L" EXACT [] synonym: "FDI tooth 74" EXACT [] synonym: "left lower first primary molar tooth" EXACT HUMAN_PREFERRED [FMA:84243] @@ -402410,6 +427119,7 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490049 name: left lower primary canine tooth def: "A lower primary canine tooth that is in the left side of the lower jaw region." [] +subset: human_subset synonym: "ADA tooth M" EXACT [] synonym: "FDI tooth 73" EXACT [] synonym: "left lower primary canine tooth" EXACT HUMAN_PREFERRED [FMA:84233] @@ -402426,6 +427136,8 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490050 name: left lower lateral primary incisor tooth def: "A lower lateral primary incisor tooth that is in the left side of the lower jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth N" EXACT [] synonym: "FDI tooth 72" EXACT [] synonym: "left lower lateral primary incisor tooth" EXACT HUMAN_PREFERRED [FMA:84227] @@ -402441,6 +427153,8 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8490051 name: left lower central primary incisor tooth def: "A lower central primary incisor tooth that is in the left side of the lower jaw region." [] +subset: human_subset +subset: mouse_subset synonym: "ADA tooth O" EXACT [] synonym: "FDI tooth 71" EXACT [] synonym: "left lower central primary incisor tooth" EXACT HUMAN_PREFERRED [FMA:84225] @@ -402457,6 +427171,8 @@ creation_date: 2022-11-18T00:00:00Z id: UBERON:8500000 name: cranial temporal line def: "A dorsally concave, laterally-directed line on either side of the skull that runs along the temporal fossa, starting from above the zygomatico-frontal suture. It bounds the anterodorsal part of the temporal fossa and its the attachment site to the temporalis muscle." [https://en.wikipedia.org/wiki/Parietal_bone, https://www.imaios.com/en/e-anatomy/anatomical-structure/temporal-line-1536895640, https://www.merriam-webster.com/medical/temporal%20line] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006800 ! anatomical line relationship: connects UBERON:0000209 ! tetrapod frontal bone relationship: connects UBERON:0000210 ! tetrapod parietal bone @@ -402466,6 +427182,8 @@ relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 id: UBERON:8500001 name: euryon def: "An anatomical point on the most lateral point of the neurocranium." [ISBN:9780873659505] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: part_of UBERON:0001703 ! neurocranium @@ -402474,6 +427192,8 @@ relationship: part_of UBERON:0001703 ! neurocranium id: UBERON:8500002 name: supraorbital foramen def: "A bony elongated opening located above the orbit and under the forehead." [https://en.wikipedia.org/wiki/Supraorbital_foramen] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013685 ! foramen of skull relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 @@ -402483,6 +427203,8 @@ relationship: part_of UBERON:0000209 ! tetrapod frontal bone id: UBERON:8500003 name: supraorbitale def: "An anatomical point on the median point of the line joining the aboral borders of the supraorbital foramen." [ISBN:9780873659505] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: part_of UBERON:8500002 ! supraorbital foramen @@ -402491,6 +427213,8 @@ relationship: part_of UBERON:8500002 ! supraorbital foramen id: UBERON:8500004 name: entorbitale def: "An anatomical point on the naso-medial indentation of the orbit that corresponds with the inner angle of the eye in the living animal." [ISBN:9780873659505] +subset: human_subset +subset: mouse_subset is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: part_of UBERON:0001697 ! orbit of skull @@ -402500,6 +427224,8 @@ id: UBERON:8600000 name: lobular bronchiole def: "A conductive airway that branches into terminal bronchioles." [PMID:16543587, PMID:27611890] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "preterminal bronchiole" EXACT [PMID:16543587] is_a: UBERON:0002186 ! bronchiole relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 @@ -402510,6 +427236,8 @@ property_value: dcterms-date "2023-02-08T13:31:12Z" xsd:dateTime id: UBERON:8600001 name: epithelium of lobular bronchiole def: "An epithelium of the lobular bronchiole." [FMA:62497] +subset: human_subset +subset: mouse_subset synonym: "epithelium of preterminal bronchiole" EXACT [PMID:16543587] synonym: "lobular bronchiole epithelium" EXACT [FMA:62497] is_a: UBERON:0002051 ! epithelium of bronchiole @@ -402523,6 +427251,8 @@ property_value: dcterms-date "2023-02-10T14:26:09Z" xsd:dateTime id: UBERON:8600002 name: mucosa of lobular bronchiole def: "A mucosa that is part of a lobular bronchiole." [FMA:263230] +subset: human_subset +subset: mouse_subset is_a: UBERON:0005039 ! mucosa of bronchiole intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:8600000 ! lobular bronchiole @@ -402534,6 +427264,8 @@ property_value: dcterms-date "2023-02-10T14:48:35Z" xsd:dateTime id: UBERON:8600003 name: smooth muscle tissue of lobular bronchiole def: "A smooth muscle tissue that is part of a lobular bronchiole." [FMA:261081] +subset: human_subset +subset: mouse_subset is_a: UBERON:0004515 ! smooth muscle tissue of bronchiole intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:8600000 ! lobular bronchiole @@ -402546,6 +427278,8 @@ id: UBERON:8600004 name: visceral muscle tissue def: "A muscle tissue that is associated with soft internal organs (viscera)." [BTO:0002780, CLAO:0001295] comment: It is quite common to refer to visceral muscles as smooth muscles, by analogy with vertebrates; however, most visceral muscles in arthropods are actually striated. {xref="https://en.wikipedia.org/wiki/Smooth_muscle", xref="FBbt:00005070", comment="PMID:8720463"} +subset: human_subset +subset: mouse_subset synonym: "visceral muscle" EXACT [] {comment="BTO:0002780"} is_a: UBERON:0002385 ! muscle tissue relationship: composed_primarily_of CL:0008007 ! visceral muscle cell @@ -402556,6 +427290,8 @@ property_value: dcterms-date "2023-02-16T10:17:46Z" xsd:dateTime id: UBERON:8600005 name: visceral smooth muscle tissue def: "A smooth muscle tissue that is associated with soft internal organs (viscera)." [PMID:12132390, PMID:33729000] +subset: human_subset +subset: mouse_subset synonym: "smooth musculature of viscera" EXACT [PMID:12132390] synonym: "visceral smooth muscle" EXACT [PMID:12132390] is_a: UBERON:0001135 ! smooth muscle tissue @@ -402567,6 +427303,8 @@ property_value: dcterms-date "2023-02-16T10:32:12Z" xsd:dateTime id: UBERON:8600006 name: visceral striated muscle tissue def: "A striated muscle tissue that is associated with soft internal organs (viscera)." [https://pressbooks.pub/rbtallitsch/chapter/chapter-6-muscle-tissue/, PMID:8720463] +subset: human_subset +subset: mouse_subset synonym: "striated visceral muscle tissue" EXACT [] is_a: UBERON:0002036 ! striated muscle tissue is_a: UBERON:8600004 ! visceral muscle tissue @@ -402577,6 +427315,8 @@ property_value: dcterms-date "2023-02-16T10:34:43Z" xsd:dateTime id: UBERON:8600007 name: visceral transversely striated muscle tissue def: "A striated visceral muscle tissue that has a transverse striation." [PMID:8720463] +subset: human_subset +subset: mouse_subset synonym: "transversely striated visceral muscle tissue" EXACT [] is_a: UBERON:8600006 ! visceral striated muscle tissue relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 @@ -402586,6 +427326,8 @@ property_value: dcterms-date "2023-02-16T10:54:01Z" xsd:dateTime id: UBERON:8600008 name: visceral obliquely striated muscle tissue def: "A striated visceral muscle tissue that has an oblique striation." [PMID:8720463, PMID:872199] +subset: human_subset +subset: mouse_subset is_a: UBERON:8600006 ! visceral striated muscle tissue relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 property_value: dcterms-date "2023-02-21T09:26:41Z" xsd:dateTime @@ -402596,6 +427338,8 @@ name: subsegmental bronchus def: "Branch of conducting airway between a segmental bronchus and a preterminal bronchiole." [ISBN:0781785898, ISBN:9780702077050, Wikipedia:Bronchus] comment: Like other bronchi, the walls of a subsegmental bronchus contain plates of cartilage. Notably, the cartilage plates become smaller and more widely dispersed with each branching. {xref="https://doi.org/10.1016/B978-0-12-381361-9.00009-3", xref="PMID:14913504"} subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "intrasegmental bronchus" RELATED [https://doi.org/10.1016/B978-0-12-381361-9.00009-3] is_a: UBERON:0035767 ! intrapulmonary bronchus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 @@ -402616,6 +427360,8 @@ id: UBERON:8600010 name: bronchial submucosal gland ciliated duct def: "A ciliated duct part of a bronchial submucosal gland." [PMID:30864819] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:8600014 ! submucosal gland ciliated duct intersection_of: UBERON:8600014 ! submucosal gland ciliated duct @@ -402631,6 +427377,8 @@ id: UBERON:8600011 name: tracheal submucosal gland ciliated duct def: "A ciliated duct part of a tracheal submucosal gland." [PMID:30864819] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:8600014 ! submucosal gland ciliated duct intersection_of: UBERON:8600014 ! submucosal gland ciliated duct @@ -402646,6 +427394,8 @@ id: UBERON:8600012 name: submucosal gland acinus def: "A spherical or tubular structure in a submucosal gland that produces and secretes mucus and other substances into the ducts leading to the surface epithelium." [PMID:17394068, PMID:17707699, PMID:25648514, PMID:30864819] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0014717 ! mucous acinus intersection_of: UBERON:0009842 ! glandular acinus intersection_of: part_of UBERON:0011148 ! submucosal gland @@ -402659,6 +427409,8 @@ id: UBERON:8600013 name: submucosal gland collecting duct def: "A non-secretory tubular structure in the submucosal gland where secretions are collected before flowing towards the surface epithelium." [PMID:10520827, PMID:17707699, PMID:25648514, PMID:30864819] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0000058 ! duct relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0011148 ! submucosal gland @@ -402669,6 +427421,8 @@ property_value: dcterms-date "2023-05-02T08:08:59Z" xsd:dateTime id: UBERON:8600014 name: submucosal gland ciliated duct def: "A ciliated tubular structure in a submucosal gland connecting the submucosal gland collecting duct with the surface epithelium." [PMID:17707699, PMID:30864819] +subset: human_subset +subset: mouse_subset is_a: UBERON:0000058 ! duct relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: has_part CL:0000067 ! ciliated epithelial cell @@ -402679,6 +427433,8 @@ property_value: dcterms-date "2023-05-02T08:09:14Z" xsd:dateTime id: UBERON:8600015 name: posterior sector of right lobe of liver def: "The posterior sector of the right lobe of the liver." [PMID:30992874] +subset: human_subset +subset: mouse_subset synonym: "lateral sector of right lobe of liver" EXACT [PMID:24453062] synonym: "liver right lateral lobe" RELATED [https://orcid.org/0000-0002-6443-9376] synonym: "right hepatic posterior sector" EXACT [PMID:30487943] @@ -402692,6 +427448,8 @@ property_value: dcterms-date "2023-05-15T10:46:34Z" xsd:dateTime id: UBERON:8600016 name: anterior sector of right lobe of liver def: "The anterior sector of the right lobe of the liver." [PMID:30992874] +subset: human_subset +subset: mouse_subset synonym: "liver right medial lobe" RELATED [https://orcid.org/0000-0002-6443-9376] synonym: "medial sector of right lobe of liver" EXACT [PMID:24453062] synonym: "right hepatic anterior sector" EXACT [PMID:30487943] @@ -402706,6 +427464,8 @@ name: bronchopulmonary segment def: "A discrete anatomical unit of the lung that is composed of a segmental bronchus and the lung tissue supplied by that bronchus. A bronchopulmonary segment exhibits a pyramidal shape, with its apex pointing towards the center of the lung and its base toward the pleural surface." [doi:10.1016/j.mpaic.2008.09.022, FMA:7312, PMID:18271171, PMID:33620799] comment: A bronchopulmonary segment is surrounded by connective tissue septa, which are continuous with the pleural surface and prevent air collateralization between segments somewhat. In humans, the right lung has ten bronchopulmonary segments and eight or nine bronchopulmonary segments in the left lung. {xref="doi:10.1016/j.mpaic.2008.09.022", xref="PMID:18271171"} subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "lung segment" EXACT [PMID:33620799] is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0004119 ! endoderm-derived structure @@ -402721,6 +427481,8 @@ id: UBERON:8600018 name: neuroendocrine system def: "A regulatory system of the body that integrates the nervous system and the endocrine system. This system is formed by specialized neuroendocrine cells located mainly in the nervous system and neuroendocrine glands. However, they can also be found as either single cells or small clusters of cells dispersed throughout the surface epithelium of different tissues. The neuroendocrine system functions through the release of neurotransmitters and neurohormones, enabling communication between the endocrine and nervous systems to govern vitally important processes that include growth, reproduction, metabolism and energy homeostasis, electrolyte and water balance, and responses to stress." [doi:10.1016/B978-0-12-375097-6.10001-0, PMID:15481802, PMID:17003257, PMID:25905254, Wikipedia:endocrinology] comment: In vertebrates, the hypothalamic-pituitary-target organ axis (H-P axis), the autonomic nervous system (ANS) and the diffuse neuroendocrine or APUD system contribute to the neuroendocrine system. {xref="PMID:15481802"} +subset: human_subset +subset: mouse_subset synonym: "NES" RELATED OMO:0003000 [PMID:15481802] is_a: UBERON:0000467 ! anatomical system relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 @@ -402733,6 +427495,8 @@ id: UBERON:8600019 name: placental basal plate def: "A maternal facing structure of the placental disc, adjacent to the intervillous space. Major components of the placental basal plate include decidua basalis, fibrinoid, connective tissue, extravillous trophoblasts, and residues of degenerating villi and maternal vessels." [PMID:17059842, PMID:32108320] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "PBP" RELATED OMO:0003000 [PMID:31002314] synonym: "placenta basal plate" EXACT [PMID:32108320] is_a: UBERON:0004120 ! mesoderm-derived structure @@ -402748,6 +427512,8 @@ id: UBERON:8600020 name: placental septum def: "An extension of the basal plate that protrudes into the intervillous space, creating a system of grooves which delimit elevated areas, also known as cotyledons or maternal lobes." [doi:10.1007/978-3-030-84725-8, PMID:32108320] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "placenta septum" EXACT [PMID:35190336] synonym: "placental septa" RELATED OMO:0003004 [doi:10.1007/BF00406305] is_a: UBERON:0003037 ! septum @@ -402763,6 +427529,8 @@ id: UBERON:8600021 name: chorionic plate blood vessel def: "A blood vessel that is part of the chorionic plate." [https://www.ncbi.nlm.nih.gov/books/NBK53254/] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0022358 ! placenta blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0004027 ! chorionic plate @@ -402776,6 +427544,8 @@ id: UBERON:8600022 name: pulmonary interlobular septum def: "A septum that surrounds and gives shape to the secondary pulmonary lobules, it is composed of connective tissue within which run the pulmonary veins and lymphatic vessels." [doi:10.53347/rID-8764, PMID:22283705, PMID:3259815] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "interlobular interstitium" RELATED [doi:10.53347/rID-8764] synonym: "interlobular septa" BROAD OMO:0003004 [PMID:3259815] synonym: "interlobular septum" BROAD [doi:10.53347/rID-8764] @@ -402792,6 +427562,8 @@ property_value: dcterms-date "2023-10-23T08:52:12Z" xsd:dateTime id: UBERON:8600023 name: placental villous stroma def: "A stroma that is part of a chorionic villus (placental villus). A placental villous stroma supports the fetal capillaries and villous trophoblast." [PMID:31512233] +subset: human_subset +subset: mouse_subset synonym: "chorionic villous stroma" EXACT [PMID:12624135] synonym: "CVS" RELATED OMO:0003000 [PMID:12624135] is_a: UBERON:0003891 ! stroma @@ -402807,6 +427579,8 @@ property_value: dcterms-date "2023-07-04T10:46:17Z" xsd:dateTime id: UBERON:8600024 name: pulmonary venule def: "A venule that is part of a lung and drains oxygenated blood from pulmonary capillaries. A pulmonary venule merges into a pulmonary vein branch that runs in the pulmonary interlobular septa." [PMID:22283705, PMID:30247823] +subset: human_subset +subset: mouse_subset is_a: UBERON:0003494 ! respiratory system venule is_a: UBERON:0003512 ! lung blood vessel is_a: UBERON:0005194 ! thoracic vein @@ -402824,6 +427598,8 @@ property_value: dcterms-date "2023-10-24T11:26:27Z" xsd:dateTime id: UBERON:8600025 name: intervillous space def: "An anatomical space that separates the basal plate and the chorionic plate. The intervillous space is filled with endometrial gland secretions during early stages of the pregnancy and later perfused with maternal blood, bathing the chorionic villous tree." [doi:10.1007/978-3-030-84725-8, PMID:32108320] +subset: human_subset +subset: mouse_subset is_a: UBERON:0012466 ! extraembryonic cavity relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:8600038 ! placental disc @@ -402835,6 +427611,8 @@ id: UBERON:8600026 name: chorionic villous tree def: "A tree-like structure formed by chorionic villi that sprouts from the chorionic plate in the placental disc. The arborous shape of the chorionic villous tree provides maximal contact area with maternal blood in the intervillous space." [doi:10.1007/978-3-030-84725-8] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "placental villous tree" EXACT [PMID:9260835] synonym: "villous tree" BROAD [doi:10.1007/978-3-030-84725-8] is_a: UBERON:0004120 ! mesoderm-derived structure @@ -402851,6 +427629,8 @@ id: UBERON:8600027 name: chorionic stem villus def: "A chorionic villus that provides structural support to the villous tree. A chorionic stem villus is characterized by a condensed fibrous stroma in which fetal arteries, veins, arterioles, and venules are embedded. It represents a distributing framework for fetal chorionic circulation, supplying the floating villi. It can exhibit a diameter ranging from approximately 3000 μm (trunci near the chorionic plate) to 80 μm (smallest ramuli chorii)." [doi:10.1007/978-3-030-84725-8, PMID:9260835] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "placental stem villus" EXACT [PMID:9260835] is_a: UBERON:0007106 ! chorionic villus relationship: branching_part_of UBERON:8600026 ! chorionic villous tree @@ -402865,6 +427645,8 @@ id: UBERON:8600028 name: chorionic mesenchymal villus def: "The first generation of a tertiary villus that is derived from a syncytial sprout by the invasion of the mesenchyme, in which blood vessels differentiate through vasculogenesis, and gradually transforms into a new immature intermediate villus. A chorionic mesenchymal villus has a thick trophoblastic covering, and cytotrophoblast cells are interposed between syncytium and the trophoblastic basal lamina over 50–100% of the surface. The stroma is characterized by loosely arranged collagen fibers that enmesh mesenchymal and some villous macrophages. The fetal capillaries are poorly developed." [doi:10.1007/978-3-030-84725-8] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "mesenchymal villus" BROAD [doi:10.1007/978-3-030-84725-8] is_a: UBERON:0009995 ! tertiary chorionic villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 @@ -402876,6 +427658,8 @@ id: UBERON:8600029 name: chorionic immature intermediate villus def: "A bulbous, immature chorionic villus that is formed of loose connective tissue with few fetal vessels. A chorionic immature intermediate villus develops from a chorionic mesenchymal villus, and is the forerunner of a chorionic stem villus." [doi:10.1007/978-3-030-84725-8, PMID:487407, PMID:9260835] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "immature intermediate villus" RELATED [doi:10.1007/978-3-030-84725-8, PMID:21452443] is_a: UBERON:0007106 ! chorionic villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 @@ -402889,6 +427673,8 @@ id: UBERON:8600030 name: chorionic terminal villus def: "The most distal part of a chorionic villus. A chorionic terminal villus is a grape-like structure characterized by a high degree of capillarization and highly dilated sinusoids. A terminal villus has less stroma and a discontinuous cytotrophoblast layer, and contains 4–6 fetal capillaries per cross section. It exhibits a diameter ranging from 40 to about 80 μm." [doi:10.1007/978-3-030-84725-8, PMID:21452443] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "terminal villus" BROAD [PMID:21452443] is_a: UBERON:8600032 ! chorionic floating villus relationship: branching_part_of UBERON:8600026 ! chorionic villous tree @@ -402901,6 +427687,8 @@ id: UBERON:8600031 name: chorionic mature intermediate villus def: "A slender branch of a chorionic stem villus. A chorionic mature intermediate villus lacks fetal arterioles and venules in the stroma, which is composed of slender fetal capillaries embedded into a loose connective tissue that is rich in cells but poor in fibers. It exhibits a diameter ranging from 60 to about 100 μm." [doi:10.1007/978-3-030-84725-8, PMID:21452443] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "mature intermediate villus" BROAD [PMID:21452443] is_a: UBERON:8600032 ! chorionic floating villus relationship: branching_part_of UBERON:8600026 ! chorionic villous tree @@ -402913,6 +427701,8 @@ property_value: dcterms-date "2023-12-12T13:41:28Z" xsd:dateTime id: UBERON:8600032 name: chorionic floating villus def: "A chorionic villus that is not attached to the placental basal plate and it is immersed in maternal blood." [doi:10.1007/978-3-030-84725-8, PMID:31870762, PMID:32513715] +subset: human_subset +subset: mouse_subset synonym: "floating villus" BROAD [PMID:31870762] synonym: "free-floating villus" BROAD [doi:10.1007/978-3-030-84725-8] is_a: UBERON:0007106 ! chorionic villus @@ -402925,6 +427715,8 @@ property_value: dcterms-date "2023-12-12T13:42:09Z" xsd:dateTime id: UBERON:8600033 name: chorionic anchoring villus def: "A distal smaller chorionic stem villus that is connected to the maternal side of the placenta (in early gestational stages to the decidua, and later to the developing basal plate) via a cytotrophoblast cell column. A chorionic anchoring villus stabilizes the position of the villous tree in the maternal intervillous bloodstream." [doi:10.1007/978-3-030-84725-8, PMID:15142834, PMID:32513715, PMID:9260835] +subset: human_subset +subset: mouse_subset synonym: "anchoring villus" BROAD [PMID:15142834] is_a: UBERON:8600027 ! chorionic stem villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 @@ -402934,6 +427726,8 @@ property_value: dcterms-date "2023-12-12T13:42:20Z" xsd:dateTime id: UBERON:8600034 name: jejunum lamina propria def: "A lamina propria that is part of a jejunum." [PMID:9394954] +subset: human_subset +subset: mouse_subset synonym: "jejunal lamina propria" EXACT [PMID:1556433] synonym: "lamina propria of jejunum" EXACT [PMID:22763879] is_a: UBERON:0001238 ! lamina propria of small intestine @@ -402949,6 +427743,8 @@ property_value: dcterms-date "2024-01-09T16:36:35Z" xsd:dateTime id: UBERON:8600035 name: ileum lamina propria def: "A lamina propria that is part of an ileum." [PMID:29316348] +subset: human_subset +subset: mouse_subset synonym: "ileal lamina propria" EXACT [PMID:37467267] synonym: "lamina propria of ileum" EXACT [PMID:36067905] is_a: UBERON:0001238 ! lamina propria of small intestine @@ -402965,6 +427761,8 @@ id: UBERON:8600036 name: kidney loop of Henle long descending thin limb outer medulla def: "A section of the long descending thin limb of the loop of Henle that is part of the outer medulla of the kidney." [PMID:33769951] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "DTL2" RELATED OMO:0003000 [PMID:33769951] synonym: "long descending limb of the loop of Henle in the outer medulla" EXACT [PMID:33769951] is_a: UBERON:0000064 ! organ part @@ -402980,6 +427778,8 @@ id: UBERON:8600037 name: kidney loop of Henle long descending thin limb inner medulla def: "A section of the long descending thin limb of the loop of Henle that is part of the inner medulla of the kidney." [PMID:33769951] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "DTL3" RELATED OMO:0003000 [PMID:33769951] synonym: "long descending limb of the loop of Henle in the inner medulla" EXACT [PMID:33769951] is_a: UBERON:0000064 ! organ part @@ -402995,6 +427795,8 @@ id: UBERON:8600038 name: placental disc def: "A disc-shaped structure that is part of the placenta. A placental disc supports fetal development through the exchange of nutrients between maternal and fetal bloodstreams. The placental disc is structured to keep the blood streams separate, while maximizing surface area for the transport of nutrients between them, to maintain an immunological barrier." [PMID:35496035] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "placental disk" EXACT [PMID:30133439] is_a: UBERON:0004120 ! mesoderm-derived structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 @@ -403007,6 +427809,8 @@ id: UBERON:8600039 name: chorionic villous mesenchyme def: "A mesenchyme that is part of a chorionic villus." [doi:10.1007/978-3-030-84725-8] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003265 ! chorionic mesenchyme is_a: UBERON:0010377 ! mesenchyme from somatopleure @@ -403022,6 +427826,8 @@ id: UBERON:8600040 name: chorionic stem villous blood vessel def: "A blood vessel that is part of a chorionic stem villus." [doi:10.1007/978-3-030-84725-8] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "stem villous vessel" BROAD [PMID:7547738] is_a: UBERON:0022358 ! placenta blood vessel intersection_of: UBERON:0001981 ! blood vessel @@ -403036,6 +427842,8 @@ id: UBERON:8600041 name: chorionic terminal villous capillary def: "A capillary that is part of a chorionic terminal villus. This capillary is generally narrow, but displays sinusoidal dilations along its length, often at the points of acute bends. These dilations bring the capillary endothelium into close contact with the overlying syncytiotrophoblast to form a vasculosyncytial membrane." [doi:10.1007/978-3-030-84725-8] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "terminal villous capillary" BROAD [PMID:22461195] is_a: UBERON:0001982 ! capillary is_a: UBERON:0022358 ! placenta blood vessel @@ -403051,6 +427859,8 @@ id: UBERON:8600042 name: endometrial lymphatic vessel def: "A lymphatic vessel that is part of an endometrium." [PMID:23054374] subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0001473 ! lymphatic vessel is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0001473 ! lymphatic vessel @@ -403064,6 +427874,8 @@ property_value: dcterms-date "2024-01-16T18:18:36Z" xsd:dateTime id: UBERON:8600043 name: lateral wall of urinary bladder def: "A wall of the urinary bladder that is situated on the sides or flanks." [PMID:30548115] +subset: human_subset +subset: mouse_subset xref: FMA:15905 is_a: UBERON:0001256 ! wall of urinary bladder relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 @@ -403076,6 +427888,8 @@ property_value: dcterms-date "2024-02-29T10:09:51Z" xsd:dateTime id: UBERON:8600044 name: left lateral wall of urinary bladder def: "A lateral wall of the urinary bladder that is located on the left side." [PMID:30548115] +subset: human_subset +subset: mouse_subset synonym: "left wall of bladder" BROAD [PMID:32233638] synonym: "left wall of urinary bladder" EXACT [FMA:15907] xref: FMA:15907 @@ -403090,6 +427904,8 @@ property_value: dcterms-date "2024-02-29T10:12:59Z" xsd:dateTime id: UBERON:8600045 name: right lateral wall of urinary bladder def: "A lateral wall of the urinary bladder that is located on the right side." [PMID:30548115] +subset: human_subset +subset: mouse_subset synonym: "right wall of bladder" BROAD [PMID:32233638] synonym: "right wall of urinary bladder" EXACT [FMA:15906] xref: FMA:15906 @@ -403104,6 +427920,8 @@ property_value: dcterms-date "2024-02-29T10:14:47Z" xsd:dateTime id: UBERON:8600046 name: anterior wall of urinary bladder def: "The most anterior wall of the urinary bladder." [doi:10.1007/978-3-642-71368-2_6, PMID:30548115] +subset: human_subset +subset: mouse_subset synonym: "anterior wall of bladder" BROAD [PMID:30548115] synonym: "bladder roof" RELATED [doi:10.1007/978-3-642-71368-2_6] xref: FMA:15903 @@ -403118,6 +427936,8 @@ property_value: dcterms-date "2024-02-29T10:20:11Z" xsd:dateTime id: UBERON:8600047 name: posterior wall of urinary bladder def: "The most posterior wall of the urinary bladder." [PMID:30548115] +subset: human_subset +subset: mouse_subset synonym: "fundus" RELATED [doi:10.1007/978-3-642-71368-2_6] synonym: "posterior wall of bladder" BROAD [PMID:30548115] xref: FMA:15904 @@ -403132,6 +427952,8 @@ property_value: dcterms-date "2024-02-29T10:22:52Z" xsd:dateTime id: UBERON:8600048 name: apex of urinary bladder def: "The anterior angle of the superior surface of the urinary bladder. The apex of urinary bladder is connected to the umbilicus by the urachus in embryos, and by the median umbilical ligament, a remnant of urachus, in adults." [doi:10.1016/j.mpsur.2013.04.013, doi:10.1016/j.mpsur.2016.04.001, PMID:31372192] +subset: human_subset +subset: mouse_subset synonym: "apex of bladder" BROAD [FMA:15914] synonym: "vertex of urinary bladder" EXACT [PMID:35986765] xref: FMA:15914 @@ -403150,6 +427972,8 @@ property_value: dcterms-date "2024-02-29T10:29:33Z" xsd:dateTime id: UBERON:8600049 name: dome of urinary bladder def: "The anterosuperior surface of the urinary bladder, with boundaries at the apex and fundus of the urinary bladder." [doi:10.1016/j.mpsur.2016.04.001] +subset: human_subset +subset: mouse_subset xref: FMA:265241 is_a: UBERON:0006984 ! anatomical surface relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 @@ -403164,6 +427988,8 @@ id: UBERON:8600050 name: trophoblast island def: "An accumulation of extravillous trophoblast cells at the tip of a floating villus or occasionally attached to the chorionic plate embedded in fibrin." [doi:10.1007/978-3-030-84725-8] comment: A trophoblast island is directly continuous with villous cytotrophoblast in places where the villous syncytiotrophoblast is interrupted. {xref="doi:10.1007/978-3-030-84725-8"} +subset: human_subset +subset: mouse_subset synonym: "cell island" RELATED [doi:10.1007/978-3-030-84725-8] synonym: "intraplacental trophoblast island" EXACT [PMID:33218578] synonym: "trophoblastic cell island" EXACT [doi:10.1007/978-3-030-84725-8] @@ -403177,61 +428003,77 @@ property_value: dcterms-date "2024-04-15T10:05:35Z" xsd:dateTime id: UBERON:8600051 name: segmental pulmonary vein def: "A vein that is tributary of the main pulmonary veins and drains oxygenated blood from a segment of the lung." [https://radiologykey.com/6-pulmonary-artery-and-vein/] +subset: human_subset +subset: mouse_subset xref: FMA:9411 is_a: UBERON:0003512 ! lung blood vessel is_a: UBERON:0005194 ! thoracic vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0002048 ! lung +relationship: RO:0020102 UBERON:8600017 ! vessel drains blood from bronchopulmonary segment relationship: tributary_of UBERON:0002016 ! pulmonary vein -relationship: vessel_drains_blood_from UBERON:8600017 ! bronchopulmonary segment property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600052 name: subsegmental pulmonary vein def: "A vein that is tributary of the segmental pulmonary veins and drains oxygenated blood from a subsegment of the lung." [https://radiologykey.com/6-pulmonary-artery-and-vein/] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:9413 is_a: UBERON:0003512 ! lung blood vessel is_a: UBERON:0005194 ! thoracic vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0002048 ! lung +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:8600017 ! vessel drains blood from bronchopulmonary segment relationship: tributary_of UBERON:8600051 ! segmental pulmonary vein -relationship: vessel_drains_blood_from UBERON:8600017 ! bronchopulmonary segment property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600053 name: esophageal vein def: "A vein that is tributary of the azygos vein and drains blood from the esophagus." [wikipedia:Esophageal_veins] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:4748 is_a: UBERON:0001638 ! vein is_a: UBERON:0003502 ! neck blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0000974 ! neck +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0001043 ! vessel drains blood from esophagus relationship: tributary_of UBERON:0001594 ! azygos vein -relationship: vessel_drains_blood_from UBERON:0001043 ! esophagus property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600054 name: supreme intercostal vein def: "A vein that is tributary of the superior intercostal vein and drains the first intercostal space." [wikipedia:Supreme_intercostal_vein] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "first posterior intercostal vein" EXACT [FMA:4744] xref: FMA:4744 is_a: UBERON:0005194 ! thoracic vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0016403 ! thoracic wall +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0003252 ! vessel drains blood from thoracic rib cage relationship: tributary_of UBERON:0003711 ! brachiocephalic vein -relationship: vessel_drains_blood_from UBERON:0003252 ! thoracic rib cage property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600055 name: atrioventricular nodal artery def: "An artery that branches from the right coronary artery and supplies the atrioventricular node." [wikipedia:Atrioventricular_nodal_branch] +subset: human_subset +subset: mouse_subset synonym: "atrioventricular node branch of right coronary artery" EXACT [FMA:3851] xref: FMA:3851 is_a: UBERON:0001637 ! artery @@ -403240,33 +428082,41 @@ relationship: connecting_branch_of UBERON:0001625 ! right coronary artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000948 ! heart -relationship: vessel_supplies_blood_to UBERON:0002352 ! atrioventricular node +relationship: RO:0020101 UBERON:0002352 ! vessel supplies blood to atrioventricular node property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600056 name: lateral sacral vein def: "A vein that is tributary of the internal iliac vein and drains the anterior surface of the sacrum." [wikipedia:Lateral_sacral_veins] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:18905 is_a: UBERON:0001638 ! vein is_a: UBERON:0003520 ! pelvis blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0002355 ! pelvic region of trunk +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0003690 ! vessel drains blood from fused sacrum relationship: tributary_of UBERON:0001317 ! internal iliac vein -relationship: vessel_drains_blood_from UBERON:0003690 ! fused sacrum property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600057 name: middle hemorrhoidal vein def: "A vein that is tributary of the internal iliac vein." [wikipedia:Middle_rectal_veins] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "middle rectal vein" EXACT [FMA:18893] xref: FMA:18893 is_a: UBERON:0001638 ! vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001052 ! rectum +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:0001317 ! internal iliac vein property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string @@ -403274,25 +428124,33 @@ property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string id: UBERON:8600058 name: uterine vein def: "A vein that is tributary of the internal iliac vein and drains the uterus." [wikipedia:Uterine_veins] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:18896 is_a: UBERON:0001638 ! vein is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000995 ! uterus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0000995 ! vessel drains blood from uterus relationship: tributary_of UBERON:0001317 ! internal iliac vein -relationship: vessel_drains_blood_from UBERON:0000995 ! uterus property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600059 name: deep cervical vein def: "A vein that is tributary of a vertebral vein and drains the suboccipital region, adjacent vertebral column, and deep muscles of the neck." [wikipedia:Deep_cervical_vein] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:4746 is_a: UBERON:0001638 ! vein is_a: UBERON:0003502 ! neck blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0000974 ! neck +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:0001588 ! vertebral vein property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string @@ -403300,6 +428158,9 @@ property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string id: UBERON:8600060 name: subsegmental pulmonary artery def: "An artery that is a branch of the segmental pulmonary artery and supplies deoxyge blood to a smaller subsegment of the lung." [PMID:30057869] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:9311 is_a: UBERON:0003469 ! respiratory system artery is_a: UBERON:0003512 ! lung blood vessel @@ -403307,66 +428168,87 @@ relationship: connecting_branch_of UBERON:0039262 ! segmental pulmonary artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0002048 ! lung +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600061 name: intra-acinar venule def: "A venule that receives drainage from the capillary beds after blood has perfused the pulmonary alveoli, and is tributary of the pulmonary venules." [PMID:20110543] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:8600024 ! pulmonary venule relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0008874 ! pulmonary acinus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0002299 ! vessel drains blood from alveolus of lung relationship: tributary_of UBERON:8600024 ! pulmonary venule -relationship: vessel_drains_blood_from UBERON:0002299 ! alveolus of lung property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600062 name: thyrocervical trunk def: "An artery that branches from the subclavian artery and supplies the thyroid gland, neck, and upper back regions." [wikipedia:Thyrocervical_trunk] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:3990 is_a: UBERON:0012320 ! cervical artery relationship: connecting_branch_of UBERON:0001533 ! subclavian artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0000974 ! neck +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600063 name: septal perforating artery def: "An artery that branches from the left anterior descending artery and supplies the interventricular septum of the heart." [DOI:10.1067/mtc.2001.113604] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0001637 ! artery is_a: UBERON:0003834 ! thoracic segment blood vessel relationship: connecting_branch_of UBERON:8600102 ! left anterior descending artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000915 ! thoracic segment of trunk -relationship: vessel_supplies_blood_to UBERON:0002094 ! interventricular septum +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020101 UBERON:0002094 ! vessel supplies blood to interventricular septum property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600064 name: posterolateral artery def: "An artery that branches from the right coronary artery or the circumflex artery and supplies the posterior and lateral walls of the left ventricle." [doi:10.53347/rID-35642] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0001637 ! artery is_a: UBERON:0003834 ! thoracic segment blood vessel relationship: connecting_branch_of UBERON:8600103 ! anterior internal vertebral venous plexus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000915 ! thoracic segment of trunk -relationship: vessel_supplies_blood_to UBERON:0002084 ! heart left ventricle +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020101 UBERON:0002084 ! vessel supplies blood to heart left ventricle property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600065 name: lateral femoral circumflex vein def: "A vein that is tributary of the femoral vein and drains blood from the front and middle areas of the thigh." [https://www.kenhub.com/en/library/anatomy/femoral-vein] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "set of lateral circumflex femoral veins" EXACT [FMA:70921] xref: FMA:70921 is_a: UBERON:0001638 ! vein is_a: UBERON:0003516 ! hindlimb blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0002103 ! hindlimb +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:0001361 ! femoral vein property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string @@ -403374,6 +428256,9 @@ property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string id: UBERON:8600066 name: basivertebral vein def: "A vein that is tributary of the anterior internal vertebral venous plexus and drains blood from the vertebral bodies." [doi:10.53347/rID-36991] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:321542 is_a: UBERON:0001638 ! vein is_a: UBERON:0004121 ! ectoderm-derived structure @@ -403381,86 +428266,111 @@ is_a: UBERON:0004258 ! back blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0002240 ! spinal cord +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0001075 ! vessel drains blood from bony vertebral centrum relationship: tributary_of UBERON:8600103 ! anterior internal vertebral venous plexus -relationship: vessel_drains_blood_from UBERON:0001075 ! bony vertebral centrum property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600067 name: bronchial venule def: "A venule that is tributary of the bronchial veins and drains blood from the bronchi and bronchioles of the lungs." [wikipedia:Bronchial_veins] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:8600024 ! pulmonary venule relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0002048 ! lung +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0000117 ! vessel drains blood from respiratory tube relationship: tributary_of UBERON:0001592 ! bronchial vein -relationship: vessel_drains_blood_from UBERON:0000117 ! respiratory tube property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600068 name: mental vein def: "A vein that is tributary of the facial vein and drains blood from the chin and lower lip." [doi:10.17354/ijss/2016/337] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001456 ! face +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0001710 ! vessel drains blood from lower jaw region relationship: tributary_of UBERON:0001653 ! facial vein -relationship: vessel_drains_blood_from UBERON:0001710 ! lower jaw region property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600069 name: deep lingual vein def: "A vein that is tributary of the lingual vein and drains blood from the tongue." [wikipedia:Deep_lingual_vein] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:50830 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001456 ! face +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0001723 ! vessel drains blood from tongue relationship: tributary_of UBERON:0006634 ! lingual vein -relationship: vessel_drains_blood_from UBERON:0001723 ! tongue property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600070 name: dorsal lingual vein def: "A vein that is tributary of the lingual vein and drains blood from the dorsum of the tongue, and the sides of the tongue." [wikipedia:Dorsal_lingual_veins] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:50826 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001456 ! face +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0001723 ! vessel drains blood from tongue relationship: tributary_of UBERON:0006634 ! lingual vein -relationship: vessel_drains_blood_from UBERON:0001723 ! tongue property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600071 name: sublingual vein def: "A vein that is tributary of the lingual vein and drains blood from the ventral (inferior) surface of the tongue and the sublingual glands." [wikipedia:Sublingual_vein] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:50836 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001456 ! face +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0001832 ! vessel drains blood from sublingual gland relationship: tributary_of UBERON:0006634 ! lingual vein -relationship: vessel_drains_blood_from UBERON:0001832 ! sublingual gland property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600072 name: glandular venous plexus def: "A venous plexus tha connects the middle and superior thyroid veins." [https://www.anatomy.net/superior-thyroid-vein] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "thiroid venous plexus" EXACT [doi:10.53347/rID-70578] is_a: UBERON:0001593 ! venous plexus is_a: UBERON:0006876 ! vasculature of organ relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0002046 ! thyroid gland +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:0007157 ! superior thyroid vein property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string @@ -403468,24 +428378,32 @@ property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string id: UBERON:8600073 name: circumflex humeral vein def: "A vein that is tributary of the axillary vein and drains blood from the region around the neck of the humerus." [wikipedia:Axillary_vein] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0001638 ! vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001467 ! shoulder +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0000976 ! vessel drains blood from humerus relationship: tributary_of UBERON:0000985 ! axillary vein -relationship: vessel_drains_blood_from UBERON:0000976 ! humerus property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600074 name: thoracoacromial vein def: "A vein that is tributary of the axillary vein and drains blood from the thoracoacromial region, including the pectoral, shoulder, and clavicular regions." [wikipedia:Axillary_vein] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "thoraco-acromial vein" EXACT [FMA:23058] xref: FMA:23058 is_a: UBERON:0001638 ! vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001467 ! shoulder +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:0000985 ! axillary vein property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string @@ -403493,19 +428411,26 @@ property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string id: UBERON:8600075 name: transverse cervical vein def: "A vein that is tributary of the external jugular vein and drains blood from the superficial muscles of the back, mainly the trapezius muscle." [wikipedia:Transverse_cervical_veins] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:50858 is_a: UBERON:0001638 ! vein is_a: UBERON:0003502 ! neck blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0000974 ! neck +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0002380 ! vessel drains blood from trapezius muscle relationship: tributary_of UBERON:0001101 ! external jugular vein -relationship: vessel_drains_blood_from UBERON:0002380 ! trapezius muscle property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600076 name: suboccipital venous plexus def: "A venous plexus that is tributary of the deep cervical veins and drains blood from the suboccipital region." [doi:10.1227/01.neu.0000303217.53607.d9] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:50803 is_a: UBERON:0001593 ! venous plexus is_a: UBERON:0006876 ! vasculature of organ @@ -403513,6 +428438,7 @@ is_a: UBERON:0036303 ! vasculature of central nervous system relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0002240 ! spinal cord +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:8600059 ! deep cervical vein property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string @@ -403520,6 +428446,9 @@ property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string id: UBERON:8600077 name: pulmonary arteriole def: "An arteriole that branches from the pulmonary arteries and supplies deoxygenated blood to the pulmonary capillaries and alveolar capillaries of the lungs." [https://radiologykey.com/6-pulmonary-artery-and-vein/] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "set of all pulmonary arterioles" EXACT [FMA:279896] xref: FMA:279896 is_a: UBERON:0003469 ! respiratory system artery @@ -403529,39 +428458,51 @@ relationship: connecting_branch_of UBERON:8600060 ! subsegmental pulmonary arter relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0010369 ! secondary pulmonary lobule -relationship: vessel_supplies_blood_to UBERON:0016405 ! pulmonary capillary +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020101 UBERON:0016405 ! vessel supplies blood to pulmonary capillary property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600078 name: ascending pharyngeal artery def: "An artery of the neck that branches from the external carotid artery and supplies the pharynx." [wikipedia:Ascending_pharyngeal_artery] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:49497 is_a: UBERON:0012320 ! cervical artery is_a: UBERON:0035398 ! branch of external carotid artery relationship: connecting_branch_of UBERON:0001070 ! external carotid artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0000974 ! neck -relationship: vessel_supplies_blood_to UBERON:0006562 ! pharynx +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020101 UBERON:0006562 ! vessel supplies blood to pharynx property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600079 name: dural artery def: "An artery that branches from the internal carotid artery and supplies the anterior clinoid process of the dura mater." [doi:10.1016/j.wneu.2018.12.071] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel relationship: connecting_branch_of UBERON:0001532 ! internal carotid artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000033 ! head -relationship: vessel_supplies_blood_to UBERON:0002407 ! pericardium +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020101 UBERON:0002407 ! vessel supplies blood to pericardium property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600080 name: pericardial artery def: "An artery that branches from the descending thoracic aorta and supplies the dorsal portion of the pericardium." [wikipedia:Descending_thoracic_aorta] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:69329 is_a: UBERON:0001637 ! artery is_a: UBERON:0003834 ! thoracic segment blood vessel @@ -403569,14 +428510,18 @@ relationship: connecting_branch_of UBERON:0002345 ! descending thoracic aorta relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000915 ! thoracic segment of trunk -relationship: vessel_supplies_blood_to UBERON:0001103 ! diaphragm -relationship: vessel_supplies_blood_to UBERON:0002407 ! pericardium +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020101 UBERON:0001103 ! vessel supplies blood to diaphragm +relationship: RO:0020101 UBERON:0002407 ! vessel supplies blood to pericardium property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600081 name: percardiacophrenic artery def: "An artery that branches from the internal thoracic artery and supplies the pericardium and the diaphragm." [wikipedia:Pericardiacophrenic_artery] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "pericardiacophrenic artery" EXACT [FMA:3964] xref: FMA:3964 is_a: UBERON:0003469 ! respiratory system artery @@ -403584,18 +428529,23 @@ is_a: UBERON:0003834 ! thoracic segment blood vessel relationship: connecting_branch_of UBERON:0002456 ! internal thoracic artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001103 ! diaphragm +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600082 name: superficial iliac circumflex vein def: "A vein that is tributary of the great saphenous vein and drains blood from the inguinal region and the anterior abdominal wall." [wikipedia:Great_saphenous_vein] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "superficial circumflex iliac vein" EXACT [FMA:44319] xref: FMA:44319 is_a: UBERON:0001638 ! vein is_a: UBERON:0003516 ! hindlimb blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0002103 ! hindlimb +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:0001363 ! great saphenous vein property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string @@ -403603,6 +428553,8 @@ property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string id: UBERON:8600083 name: fibular vein def: "A vein that is tributary of the posterior tibial vein and drains blood from the lateral compartment of the leg." [wikipedia:Fibular_veins] +subset: human_subset +subset: mouse_subset synonym: "set of peroneal veins" EXACT [FMA:71587] xref: FMA:71587 is_a: UBERON:0001638 ! vein @@ -403616,20 +428568,27 @@ property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string id: UBERON:8600084 name: prostatic venule def: "A venule that is tributary of the prostatic venous plexus and drains blood from the prostate gland." [https://www.kenhub.com/en/library/anatomy/prostatic-venous-plexus] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0001638 ! vein is_a: UBERON:0001979 ! venule is_a: UBERON:0003520 ! pelvis blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0002355 ! pelvic region of trunk +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0002367 ! vessel drains blood from prostate gland relationship: tributary_of UBERON:0009042 ! prostatic venous plexus -relationship: vessel_drains_blood_from UBERON:0002367 ! prostate gland property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600085 name: hepatic portal venule def: "A venule that branches from the hepatic portal vein to transport nutrient-rich blood from the gastrointestinal tract and spleen to supply the liver. The hepatic portal venule is tributary of the hepatic sinusoids." [wikipedia:Liver_sinusoid] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0001637 ! artery is_a: UBERON:0001979 ! venule is_a: UBERON:0015796 ! liver blood vessel @@ -403637,61 +428596,78 @@ relationship: connecting_branch_of UBERON:0001639 ! hepatic portal vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0004647 ! liver lobule +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020101 UBERON:0004647 ! vessel supplies blood to liver lobule relationship: tributary_of UBERON:0001281 ! hepatic sinusoid -relationship: vessel_supplies_blood_to UBERON:0004647 ! liver lobule property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600086 name: incisor artery def: "An artery that branches from the inferior alveolar artery and supplies the roots and pulp of the teeth of the lower jaw. It forms anastomoses with its contralateral partner." [wikipedia:Inferior_alveolar_artery] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel relationship: connecting_branch_of UBERON:0014693 ! inferior alveolar artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001456 ! face -relationship: vessel_supplies_blood_to UBERON:0009679 ! set of lower jaw teeth +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020101 UBERON:0009679 ! vessel supplies blood to set of lower jaw teeth property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600087 name: external nasal vein def: "A vein that is tributary of the angular vein and drains blood from the superficial tissues and skin of the dorsum (bridge) and ala (wings) of the nose." [https://www.anatomy.net/angular-vein] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:50910 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001456 ! face +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0000004 ! vessel drains blood from nose relationship: tributary_of UBERON:0014686 ! angular vein -relationship: vessel_drains_blood_from UBERON:0000004 ! nose property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600088 name: supratrochlear vein def: "A vein that is tributary of the angular vein and drains blood from the muscles and skin of the forehead." [wikipedia:Angular_vein] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:50898 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001456 ! face +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0008200 ! vessel drains blood from forehead relationship: tributary_of UBERON:0014686 ! angular vein -relationship: vessel_drains_blood_from UBERON:0008200 ! forehead property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600089 name: transverse nasal root vein def: "A vein that is tributary of the angular veins and drains blood from the bridge of the nose." [https://plasticsurgerykey.com/veins-of-the-face-and-neck/] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0009141 ! craniocervical region vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000004 ! nose +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:0014686 ! angular vein property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string @@ -403699,75 +428675,98 @@ property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string id: UBERON:8600090 name: hypophyseal vein def: "A vein that is tributary of the cavernous sinus and drains blood from the pituitary gland." [https://www.kenhub.com/en/library/anatomy/the-cavernous-sinus] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0001638 ! vein is_a: UBERON:0003499 ! brain blood vessel is_a: UBERON:0005156 ! reproductive structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000007 ! pituitary gland +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0000007 ! vessel drains blood from pituitary gland relationship: tributary_of UBERON:0003712 ! cavernous sinus -relationship: vessel_drains_blood_from UBERON:0000007 ! pituitary gland property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600091 name: inferior anastomotic vein def: "A vein that is tributary of the transverse sinus and drains blood from the adjacent cortical regions of the temporal lobe. The inferior anastomotic vein forms an anastomosis (connection) between the superficial middle cerebral vein anteriorly and the transverse sinus posteriorly." [wikipedia:Inferior_anastomotic_vein] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:51239 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000033 ! head +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0001871 ! vessel drains blood from temporal lobe relationship: tributary_of UBERON:0001641 ! transverse sinus -relationship: vessel_drains_blood_from UBERON:0001871 ! temporal lobe property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600092 name: radial vein def: "A vein that is tributary of the brachial vein and drains blood from the lateral structures of the forearm, carpal and metacarpal bones, joints of the hand, and lateral forearm muscles." [wikipedia:Radial_veins] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:22947 is_a: UBERON:0001638 ! vein is_a: UBERON:0003507 ! arm blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001460 ! arm +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0002386 ! vessel drains blood from forelimb zeugopod +relationship: RO:0020102 UBERON:0002398 ! vessel drains blood from manus relationship: tributary_of UBERON:0001413 ! brachial vein -relationship: vessel_drains_blood_from UBERON:0002386 ! forelimb zeugopod -relationship: vessel_drains_blood_from UBERON:0002398 ! manus property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600093 name: ulnar vein def: "A vein that is tributary of the brachial vein and drains blood from the hand and medial and posterior aspect of forearm." [wikipedia:Ulnar_veins] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:22950 is_a: UBERON:0001638 ! vein is_a: UBERON:0003507 ! arm blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001460 ! arm +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0002386 ! vessel drains blood from forelimb zeugopod +relationship: RO:0020102 UBERON:0002398 ! vessel drains blood from manus relationship: tributary_of UBERON:0001413 ! brachial vein -relationship: vessel_drains_blood_from UBERON:0002386 ! forelimb zeugopod -relationship: vessel_drains_blood_from UBERON:0002398 ! manus property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600094 name: intra-acinar arteriole def: "An arteriole that branches from the pulmonary arteriole and supplies deoxygenated blood to the pulmonary capillaries in the alveoli of the lungs." [PMID:20110543] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset is_a: UBERON:0003469 ! respiratory system artery is_a: UBERON:0003495 ! respiratory system arteriole is_a: UBERON:0003512 ! lung blood vessel relationship: connecting_branch_of UBERON:8600077 ! pulmonary arteriole relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0008874 ! pulmonary acinus -relationship: vessel_supplies_blood_to UBERON:0002299 ! alveolus of lung +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020101 UBERON:0002299 ! vessel supplies blood to alveolus of lung property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600095 name: ascending palatine artery def: "An artery that branches from the facial artery, and branches to supply the soft palate and the palatine tonsil." [wikipedia:Ascending_palatine_artery] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:49555 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel @@ -403775,14 +428774,18 @@ relationship: connecting_branch_of UBERON:0001612 ! facial artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001456 ! face -relationship: vessel_supplies_blood_to UBERON:0001733 ! soft palate -relationship: vessel_supplies_blood_to UBERON:0002373 ! palatine tonsil +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020101 UBERON:0001733 ! vessel supplies blood to soft palate +relationship: RO:0020101 UBERON:0002373 ! vessel supplies blood to palatine tonsil property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600096 name: submental artery def: "An artery that branches from the facial artery that runs forward under the mouth, then turns upward upon reaching the chin." [wikipedia:Submental_artery] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:49561 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel @@ -403790,12 +428793,16 @@ relationship: connecting_branch_of UBERON:0001612 ! facial artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001456 ! face +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600097 name: deep lingual artery def: "An artery that branches from the lingual artery and supplies blood to the tongue itself, particularly the body and tip of the tongue. The deep lingual artery travels superiorly in a tortuous course along the under (ventral) surface of the tongue, below the longitudinalis inferior, and above the mucous membrane." [wikipedia:Lingual_artery] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "third part of lingual artery" EXACT [FMA:49532] xref: FMA:49532 is_a: UBERON:0001610 ! lingual artery @@ -403803,13 +428810,17 @@ is_a: UBERON:0003496 ! head blood vessel relationship: connecting_branch_of UBERON:0001610 ! lingual artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001456 ! face -relationship: vessel_supplies_blood_to UBERON:0001723 ! tongue +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020101 UBERON:0001723 ! vessel supplies blood to tongue property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600098 name: dorsal lingual artery def: "An artery that branches from the lingual artery and supplies the soft palate, tonsils, epiglottis, palatoglossal arch, and adjacent mucous membrane. The dorsal lingual artery runs along the upper border of the hyoid bone and anastomises with its fellow of the opposite side." [https://www.ncbi.nlm.nih.gov/books/NBK554513/] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:49546 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel @@ -403817,16 +428828,20 @@ relationship: connecting_branch_of UBERON:0001610 ! lingual artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001456 ! face -relationship: vessel_supplies_blood_to UBERON:0000388 ! epiglottis -relationship: vessel_supplies_blood_to UBERON:0001733 ! soft palate -relationship: vessel_supplies_blood_to UBERON:0002373 ! palatine tonsil -relationship: vessel_supplies_blood_to UBERON:0011640 ! palatoglossal arch +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020101 UBERON:0000388 ! vessel supplies blood to epiglottis +relationship: RO:0020101 UBERON:0001733 ! vessel supplies blood to soft palate +relationship: RO:0020101 UBERON:0002373 ! vessel supplies blood to palatine tonsil +relationship: RO:0020101 UBERON:0011640 ! vessel supplies blood to palatoglossal arch property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600099 name: accessory meningeal artery def: "An artery that branches from the maxillary artery and supplies the meninges. The accessory meningeal artery ascends through the foramen ovale to enter the cranial cavity and supply the dura mater of the floor of the middle cranial fossa and of the trigeminal cave, and to the trigeminal ganglion." [wikipedia:Accessory_meningeal_artery] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:79467 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel @@ -403834,13 +428849,17 @@ relationship: connecting_branch_of UBERON:0001616 ! maxillary artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000033 ! head -relationship: vessel_supplies_blood_to UBERON:0010743 ! meningeal cluster +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020101 UBERON:0010743 ! vessel supplies blood to meningeal cluster property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600100 name: artery of pterygoid canal def: "An artery that branches from the maxillary artery and supplies blood to structures in the auditory tube, tympanic cavity, and upper pharynx. The artery of the pterygoid canal courses through the pterygoid canal, a small bony canal located in the sphenoid bone of the skull." [wikipedia:Artery_of_the_pterygoid_canal] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:85528 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel @@ -403848,15 +428867,19 @@ relationship: connecting_branch_of UBERON:0001616 ! maxillary artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001456 ! face -relationship: vessel_supplies_blood_to UBERON:0001756 ! middle ear -relationship: vessel_supplies_blood_to UBERON:0002393 ! pharyngotympanic tube -relationship: vessel_supplies_blood_to UBERON:0006562 ! pharynx +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020101 UBERON:0001756 ! vessel supplies blood to middle ear +relationship: RO:0020101 UBERON:0002393 ! vessel supplies blood to pharyngotympanic tube +relationship: RO:0020101 UBERON:0006562 ! vessel supplies blood to pharynx property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600101 name: descending palatine artery def: "An artery that branches from the maxillary artery and supplies the hard and soft palate." [wikipedia:Descending_palatine_artery] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:49791 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel @@ -403864,14 +428887,18 @@ relationship: connecting_branch_of UBERON:0001616 ! maxillary artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001456 ! face -relationship: vessel_supplies_blood_to UBERON:0001733 ! soft palate -relationship: vessel_supplies_blood_to UBERON:0003216 ! hard palate +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020101 UBERON:0001733 ! vessel supplies blood to soft palate +relationship: RO:0020101 UBERON:0003216 ! vessel supplies blood to hard palate property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600102 name: left anterior descending artery def: "An artery that branches from the left coronary artery and supplies the anterior wall of the left ventricle, the interventricular septum, and the apex of the heart." [wikipedia:Left_anterior_descending_artery] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "anterior interventricular branch of left coronary artery" EXACT [FMA:3862] xref: FMA:3862 is_a: UBERON:0003834 ! thoracic segment blood vessel @@ -403879,12 +428906,16 @@ is_a: UBERON:0035395 ! branch of left coronary artery relationship: connecting_branch_of UBERON:0001626 ! left coronary artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600103 name: anterior internal vertebral venous plexus def: "A venous plexus that is tributary of the basivertebral veins and internal vertebral veins, draining blood from the vertebrae and spinal cord. The anterior internal vertebral venous plexus is located within the vertebral canal." [wikipedia:Internal_vertebral_venous_plexuses] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:4869 is_a: UBERON:0001593 ! venous plexus is_a: UBERON:0006876 ! vasculature of organ @@ -403892,6 +428923,7 @@ is_a: UBERON:0036303 ! vasculature of central nervous system relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0002240 ! spinal cord +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:8600104 ! intervertebral vein property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string @@ -403899,6 +428931,9 @@ property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string id: UBERON:8600104 name: intervertebral vein def: "A vein that drains blood from the vertebral column and intervertebral discs. In the neck, it is tributary of into the vertebral veins. In the thorax, it is tributary of the posterior intercostal veins. In the lumbar and sacral regions, it is tributary of the lumbar and lateral sacral veins" [https://www.kenhub.com/en/library/anatomy/veins-of-the-vertebral-column] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset xref: FMA:76736 is_a: UBERON:0001638 ! vein is_a: UBERON:0004121 ! ectoderm-derived structure @@ -403906,6 +428941,7 @@ is_a: UBERON:0004258 ! back blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0002240 ! spinal cord +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:0012199 ! posterior intercostal vein relationship: tributary_of UBERON:8600056 ! lateral sacral vein relationship: tributary_of UBERON:8600105 ! lumbar vein @@ -403915,6 +428951,9 @@ property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string id: UBERON:8600105 name: lumbar vein def: "A vein that is tributary of the inferior vena cava and drains blood from the posterior abdominal wall and lumbar region." [https://www.kenhub.com/en/library/anatomy/lumbar-veins] +subset: human_reference_atlas +subset: human_subset +subset: mouse_subset synonym: "set of lumbar veins" EXACT [FMA:70889] xref: FMA:70889 is_a: UBERON:0001638 ! vein @@ -403922,51 +428961,58 @@ is_a: UBERON:0003520 ! pelvis blood vessel relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0002355 ! pelvic region of trunk +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: RO:0020102 UBERON:0003697 ! vessel drains blood from abdominal wall +relationship: RO:0020102 UBERON:0005462 ! vessel drains blood from lower back relationship: tributary_of UBERON:0001072 ! inferior vena cava -relationship: vessel_drains_blood_from UBERON:0003697 ! abdominal wall -relationship: vessel_drains_blood_from UBERON:0005462 ! lower back property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string [Term] id: UBERON:8600106 name: anterior humeral circumflex artery def: "An artery that branches from the axilliary artery and supplies the deltoid, biceps brachii, and coracobrachialis muscles, the glenohumeral joint, the proximal humeral head, and the skin overlying the anterior aspect of the proximal humerus. This artery courses laterally across the anterior surface of the humerus and anastomoses with the posterior humeral circumflex artery." [https://www.elsevier.com/resources/anatomy/cardiovascular-system/arteries/anterior-circumflex-humeral-artery/20091] +subset: human_subset +subset: mouse_subset xref: FMA:22680 is_a: UBERON:0001637 ! artery relationship: connecting_branch_of UBERON:0001394 ! axillary artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001467 ! shoulder -relationship: vessel_supplies_blood_to UBERON:0001470 ! glenohumeral joint -relationship: vessel_supplies_blood_to UBERON:0001476 ! deltoid -relationship: vessel_supplies_blood_to UBERON:0001505 ! coracobrachialis muscle -relationship: vessel_supplies_blood_to UBERON:0001507 ! biceps brachii -relationship: vessel_supplies_blood_to UBERON:0004263 ! upper arm skin -relationship: vessel_supplies_blood_to UBERON:0006801 ! proximal head of humerus +relationship: RO:0020101 UBERON:0001470 ! vessel supplies blood to glenohumeral joint +relationship: RO:0020101 UBERON:0001476 ! vessel supplies blood to deltoid +relationship: RO:0020101 UBERON:0001505 ! vessel supplies blood to coracobrachialis muscle +relationship: RO:0020101 UBERON:0001507 ! vessel supplies blood to biceps brachii +relationship: RO:0020101 UBERON:0004263 ! vessel supplies blood to upper arm skin +relationship: RO:0020101 UBERON:0006801 ! vessel supplies blood to proximal head of humerus property_value: dcterms-date "2024-08-20T09:53:48Z" xsd:string [Term] id: UBERON:8600107 name: posterior humeral circumflex artery def: "An artery that branches from the axilliary artery and supplies the deltoid, teres major, teres minor, and long and lateral heads of the triceps brachii muscles, glenohumeral joint, and the cutaneous supply to the area posterolateral to the proximal humerus. This artery courses posteriorly with the axillary nerve, through the quadrangular space, to the posterior aspect of the humerus and anastomoses with the anterior humeral circumflex artery." [https://www.elsevier.com/resources/anatomy/cardiovascular-system/arteries/posterior-circumflex-humeral-artery/24676] +subset: human_subset +subset: mouse_subset xref: FMA:22684 is_a: UBERON:0001637 ! artery relationship: connecting_branch_of UBERON:0001394 ! axillary artery relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001467 ! shoulder -relationship: vessel_supplies_blood_to UBERON:0001470 ! glenohumeral joint -relationship: vessel_supplies_blood_to UBERON:0001476 ! deltoid -relationship: vessel_supplies_blood_to UBERON:0001478 ! teres major muscle -relationship: vessel_supplies_blood_to UBERON:0001509 ! triceps brachii -relationship: vessel_supplies_blood_to UBERON:0004263 ! upper arm skin -relationship: vessel_supplies_blood_to UBERON:0010496 ! teres minor muscle +relationship: RO:0020101 UBERON:0001470 ! vessel supplies blood to glenohumeral joint +relationship: RO:0020101 UBERON:0001476 ! vessel supplies blood to deltoid +relationship: RO:0020101 UBERON:0001478 ! vessel supplies blood to teres major muscle +relationship: RO:0020101 UBERON:0001509 ! vessel supplies blood to triceps brachii +relationship: RO:0020101 UBERON:0004263 ! vessel supplies blood to upper arm skin +relationship: RO:0020101 UBERON:0010496 ! vessel supplies blood to teres minor muscle property_value: dcterms-date "2024-08-20T09:53:48Z" xsd:string [Term] id: UBERON:8600108 name: proximal ureter def: "A segment of the ureter that extends from the renal pelvis to the common iliac artery bifurcation (to form the internal and external iliac arteries)." [PMID:30422575] +subset: human_subset +subset: mouse_subset synonym: "abdominal ureter" EXACT [PMID:30422575] synonym: "upper ureter" EXACT [PMID:30422575] xref: FMA:15882 @@ -403984,6 +429030,8 @@ property_value: dcterms-date "2024-08-28T13:51:59Z" xsd:dateTime id: UBERON:8600109 name: distal ureter def: "A segment of the ureter that extends from the common iliac artery bifurcation to the bladder. From there, the ureter curves back and follows the lateral pelvic wall inferiorly to connect with the posterolateral bladder wall." [PMID:30422575] +subset: human_subset +subset: mouse_subset synonym: "lower ureter" EXACT [PMID:30422575] synonym: "pelvic ureter" EXACT [PMID:30422575] xref: FMA:15883 @@ -404002,6 +429050,8 @@ property_value: dcterms-date "2024-08-28T14:15:03Z" xsd:dateTime id: UBERON:8600110 name: intramural ureter def: "The terminal segment of the ureter that is continuous with the distal ureter, lies where the ureter enters the bladder and extends within the bladder wall. The intramural ureter is aperistaltic, serving as a reflux-preventing mechanism, preventing the backflow of urine from the bladder into the ureters." [PMID:14142154, PMID:30422575] +subset: human_subset +subset: mouse_subset synonym: "intravesical ureter" EXACT [doi:10.53347/rID-23183, PMID:33085409] xref: FMA:77289 is_a: UBERON:0004120 ! mesoderm-derived structure @@ -404018,6 +429068,8 @@ property_value: dcterms-date "2024-08-28T14:39:53Z" xsd:dateTime id: UBERON:8600111 name: right distal ureter def: "A distal ureter that is part of the right ureter." [PMID:30422575] +subset: human_subset +subset: mouse_subset synonym: "right lower ureter" EXACT [PMID:30422575] synonym: "right pelvic ureter" EXACT [PMID:30422575] xref: FMA:15886 @@ -404037,6 +429089,8 @@ property_value: dcterms-date "2024-08-28T15:12:29Z" xsd:dateTime id: UBERON:8600112 name: left distal ureter def: "A distal ureter that is part of the left ureter." [PMID:30422575] +subset: human_subset +subset: mouse_subset synonym: "left lower ureter" EXACT [PMID:30422575] synonym: "left pelvic ureter" EXACT [PMID:30422575] xref: FMA:15887 @@ -404056,6 +429110,8 @@ property_value: dcterms-date "2024-08-28T15:15:32Z" xsd:dateTime id: UBERON:8600113 name: right proximal ureter def: "A proximal ureter that is part of the right ureter." [PMID:30422575] +subset: human_subset +subset: mouse_subset synonym: "right abdominal ureter" EXACT [PMID:30422575] synonym: "right upper ureter" EXACT [PMID:30422575] xref: FMA:15884 @@ -404074,6 +429130,8 @@ property_value: dcterms-date "2024-08-28T15:19:31Z" xsd:dateTime id: UBERON:8600114 name: left proximal ureter def: "A proximal ureter that is part of the left ureter." [PMID:30422575] +subset: human_subset +subset: mouse_subset synonym: "left abdominal ureter" EXACT [PMID:30422575] synonym: "left upper ureter" EXACT [PMID:30422575] xref: FMA:15885 @@ -404092,6 +429150,8 @@ property_value: dcterms-date "2024-08-28T15:19:51Z" xsd:dateTime id: UBERON:8600115 name: right intramural ureter def: "An intramural ureter that is part of the right ureter." [PMID:30422575] +subset: human_subset +subset: mouse_subset synonym: "right intravesical ureter" EXACT [doi:10.53347/rID-23183] is_a: UBERON:8600110 ! intramural ureter intersection_of: UBERON:8600110 ! intramural ureter @@ -404108,6 +429168,8 @@ property_value: dcterms-date "2024-08-28T16:10:44Z" xsd:dateTime id: UBERON:8600116 name: left intramural ureter def: "An intramural ureter that is part of the left ureter." [PMID:30422575] +subset: human_subset +subset: mouse_subset synonym: "left intravesical ureter" EXACT [doi:10.53347/rID-23183] is_a: UBERON:8600110 ! intramural ureter intersection_of: UBERON:8600110 ! intramural ureter @@ -404120,10 +429182,60 @@ relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0001223 ! left ureter property_value: dcterms-date "2024-08-28T16:10:50Z" xsd:dateTime +[Term] +id: UBERON:8600117 +name: antimesosalpinx +def: "A posterior free border of a mesosalpinx." [https://vanat.ahc.umn.edu/ungDissect/Lab17/Lab17.html] +subset: human_subset +subset: mouse_subset +synonym: "anti-mesosalpinx" EXACT [doi:10.1101/2020.08.23.263772] +synonym: "posterior free border of mesosalpinx" EXACT [https://vanat.ahc.umn.edu/ungDissect/Lab17/Lab17.html] +synonym: "posterior free edge of mesosalpinx" EXACT [https://orcid.org/0000-0001-7655-4833] +is_a: UBERON:0002095 ! mesentery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: dc-contributor https://orcid.org/0000-0001-7655-4833 +relationship: part_of UBERON:0012331 ! mesosalpinx +property_value: dcterms-date "2024-11-14T09:59:53Z" xsd:dateTime + +[Term] +id: UBERON:8700000 +name: aorta-gonad-mesonephros +def: "A transient organ in the developing embryo composed of the dorsal aorta, developing gonads, and embryonic kidney. This structure is located in the embryonic mesoderm and serves as the primary site for the generation of definitive hematopoietic stem cells." [PMID:25686881, PMID:25749005, PMID:31813624] +subset: human_subset +subset: mouse_subset +is_a: UBERON:0002050 ! embryonic structure +relationship: dc-contributor https://orcid.org/0009-0005-7919-4905 +property_value: dcterms-date "2024-10-25T08:42:34Z" xsd:dateTime + +[Term] +id: UBERON:8700001 +name: follicle associated epithelium +def: "A specialized epithelial layer overlying the luminal surface of lymphoid follicles in gut-associated lymphoid tissue. It is found in Peyer's patches of the small intestine and appendix in humans and in the intestine and caecal patches in mice. This layer contains specialised M cells and has fewer goblet cells compared to surrounding tissue. This layer plays a crucial role in mucosal immune surveillance." [DOI:10.1007/s00702-022-02561-x, DOI:10.4061/2010/823710] +subset: human_subset +subset: mouse_subset +synonym: "FAE" EXACT [DOI:10.1007/s00702-022-02561-x] +is_a: UBERON:0004693 ! Peyer's patch epithelium +relationship: dc-contributor https://orcid.org/0009-0005-7919-4905 +property_value: dcterms-date "2024-11-07T11:44:27Z" xsd:dateTime + +[Term] +id: UBERON:8700002 +name: stratum spinosum of esophageal epithelium +def: "The second deepest layer of the stratified squamous epithelium lining the esophagus, positioned directly above the stratum basale. It consists of multiple layers of keratinocytes connected by strong intercellular junctions called desmosomes, giving the cells a characteristic \"spiny\" appearance. This layer provides structural support, contributes to the epithelial barrier function, and serves as a transitional zone for keratinocytes migrating towards the luminal surface, playing a crucial role in maintaining the integrity and protective properties of the esophageal lining." [PMID:21126700, PMID:26019440] +subset: human_subset +subset: mouse_subset +is_a: UBERON:0006920 ! esophagus squamous epithelium +is_a: UBERON:0010304 ! non-keratinized stratified squamous epithelium +relationship: dc-contributor https://orcid.org/0009-0005-7919-4905 +relationship: part_of UBERON:0001043 ! esophagus +property_value: dcterms-date "2024-11-14T15:00:21Z" xsd:dateTime + [Term] id: UBERON:8850000 name: lumen of pulmonary alveolus def: "An anatomical cavity that is part of the alveolus of the lung" [PMID:30390118] +subset: human_subset +subset: mouse_subset synonym: "alveolar lumen" BROAD [PMID:30390118] synonym: "cavity of pulmonary alveolus" EXACT [FMA:62779] synonym: "lumen of alveolus" BROAD [PMID:33806395] @@ -404141,6 +429253,8 @@ property_value: dcterms-date "2024-06-28T10:50:18Z" xsd:dateTime id: UBERON:8900000 name: sensory corpuscle def: "A mechanosensory complex in the terminal end of some nerves that forms a corpuscle. It consists of one or more neuronal terminations and associated non-neuronal cells." [PMID:35356056] +subset: human_subset +subset: mouse_subset synonym: "COEC" RELATED OMO:0003000 [PMID:35356056] synonym: "cutaneous end-organ complex" EXACT [PMID:35356056] xref: http://www.wikidata.org/entity/Q126363978 @@ -404149,15 +429263,19 @@ relationship: dc-contributor https://orcid.org/0000-0003-2473-2313 property_value: dcterms-date "2024-06-12T13:51:05Z" xsd:string [Typedef] -id: 2D_boundary_of -name: 2D boundary of -def: "a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity" [] -xref: RO:0002000 -property_value: editor_note "A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts." xsd:string -property_value: editor_note "Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape." xsd:string -property_value: example_of_usage "the surface of my skin is a 2D boundary of my body" xsd:string -is_a: mereotopologically_related_to ! mereotopologically related to -inverse_of: has_2D_boundary ! has 2D boundary +id: BFO:0000066 +name: occurs in +def: "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" [] +comment: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +property_value: seeAlso "https://wiki.geneontology.org/Occurs_in" xsd:anyURI +domain: BFO:0000003 ! occurrent +range: BFO:0000004 ! independent continuant +holds_over_chain: part_of BFO:0000066 +inverse_of: contains_process ! contains process +transitive_over: part_of ! part of [Typedef] id: BSPO:0001102 @@ -404178,53 +429296,1078 @@ id: CL:4030046 name: lacks_plasma_membrane_part [Typedef] -id: aboral_to -name: aboral to -namespace: spatial -def: "nearer to the aboral opening of the organism, on the oral-aboral axis." [BSPO:cjm] -xref: BSPO:0015202 +id: RO:0000052 +name: characteristic of +def: "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence." [] +comment: Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing. +property_value: example_of_usage "this fragility is a characteristic of this vase" xsd:string +property_value: example_of_usage "this red color is a characteristic of this apple" xsd:string +is_functional: true +is_a: RO:0002314 ! characteristic of part of +inverse_of: RO:0000053 ! has characteristic + +[Typedef] +id: RO:0000053 +name: has characteristic +def: "Inverse of characteristic_of" [] +property_value: editor_note "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." xsd:string +property_value: example_of_usage "this apple is bearer of this red color" xsd:string +property_value: example_of_usage "this vase is bearer of this fragility" xsd:string +range: BFO:0000020 ! specifically dependent continuant +is_inverse_functional: true + +[Typedef] +id: RO:0000057 +name: has participant +def: "a relation between a process and a continuant, in which the continuant is somehow involved in the process" [] +property_value: editor_note "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." xsd:string +property_value: example_of_usage "this blood coagulation has participant this blood clot" xsd:string +property_value: example_of_usage "this investigation has participant this investigator" xsd:string +property_value: example_of_usage "this process has participant this input material (or this output material)" xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000002 ! continuant +holds_over_chain: has_part RO:0000057 + +[Typedef] +id: RO:0000080 +name: quality of +def: "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence" [] +comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. +property_value: editor_note "A quality inheres in its bearer at all times for which the quality exists." xsd:string +property_value: example_of_usage "this red color is a quality of this apple" xsd:string +is_a: RO:0000052 ! characteristic of +inverse_of: has_quality ! has quality + +[Typedef] +id: RO:0000081 +name: role of +def: "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence" [] +comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. +property_value: editor_note "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists." xsd:string +property_value: example_of_usage "this investigator role is a role of this person" xsd:string +is_a: RO:0000052 ! characteristic of +inverse_of: RO:0000087 ! has role + +[Typedef] +id: RO:0000087 +name: has role +def: "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence" [] +property_value: editor_note "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists." xsd:string +property_value: example_of_usage "this person has role this investigator role (more colloquially: this person has this role of investigator)" xsd:string +domain: BFO:0000004 ! independent continuant +range: BFO:0000023 ! role +is_a: RO:0000053 ! has characteristic + +[Typedef] +id: RO:0002000 +name: 2D boundary of +def: "a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity" [] +property_value: editor_note "A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts." xsd:string +property_value: editor_note "Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape." xsd:string +property_value: example_of_usage "the surface of my skin is a 2D boundary of my body" xsd:string +is_a: RO:0002323 ! mereotopologically related to +inverse_of: has_boundary ! has 2D boundary + +[Typedef] +id: RO:0002006 +name: has synaptic terminal of +is_a: overlaps ! overlaps +inverse_of: RO:0002130 ! has synaptic terminal in + +[Typedef] +id: RO:0002021 +name: occurs across +def: "A relationship between a process and a barrier, where the process occurs in a region spanning the barrier. For cellular processes the barrier is typically a membrane. Examples include transport across a membrane and membrane depolarization." [] +is_a: RO:0002479 ! has part that occurs in +created_by: https://orcid.org/0000-0002-7073-9172 +creation_date: 2017-07-20T17:19:37Z + +[Typedef] +id: RO:0002081 +name: before or simultaneous with +comment: Primitive instance level timing relation between events +subset: ro-eco +is_a: RO:0002222 ! temporally related to + +[Typedef] +id: RO:0002086 +name: ends after +comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X) +subset: ro-eco is_transitive: true +is_a: RO:0002222 ! temporally related to [Typedef] -id: action_notes -name: actions_notes -def: "Notes on how instances of this class functon biomechanically." [https://orcid.org/0000-0002-6601-2165] -xref: UBPROP:0000014 -property_value: editor_note "This annotation property may be replaced with an annotation property from an external ontology such as IAO" xsd:string -is_metadata_tag: true +id: RO:0002090 +name: immediately precedes +comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y) +subset: ro-eco +holds_over_chain: ends_with starts_with +is_a: precedes ! precedes [Typedef] -id: acts_on_population_of -name: acts on population of -def: "p acts on population of c iff c' is a collection, has members of type c, and p has participant c" [] +id: RO:0002100 +name: has soma location +def: "Relation between a neuron and a material anatomical entity that its soma is part of." [] +domain: CL:0000540 ! neuron +range: UBERON:0000465 ! material anatomical entity +is_a: overlaps ! overlaps +transitive_over: part_of ! part of + +[Typedef] +id: RO:0002104 +name: has plasma membrane part +def: "Holds between a cell c and a protein complex or protein p if and only if that cell has as part a plasma_membrane[GO:0005886], and that plasma membrane has p as part." [] +property_value: example_of_usage "Every B cell[CL_0000236] has plasma membrane part some immunoglobulin complex[GO_0019814]" xsd:string +domain: UBERON:0000465 ! material anatomical entity +range: UBERON:0000465 ! material anatomical entity +is_a: has_part ! has part + +[Typedef] +id: RO:0002120 +name: synapsed to +def: " Relation between a neuron and an anatomical structure (including cells) that it chemically synapses to.\n " [] +comment: N1 synapsed_to some N2 \nExpands to:\nN1 SubclassOf ( \n has_part some (\n ‘pre-synaptic membrane ; GO:0042734’ that part_of some ( \n ‘synapse ; GO:0045202’ that has_part some (\n ‘post-synaptic membrane ; GO:0045211’ that part_of some N2)))) +is_a: RO:0002486 ! sends output to + +[Typedef] +id: RO:0002130 +name: has synaptic terminal in +def: "A general relation between a neuron and some structure in which it either chemically synapses to some target or in which it receives (chemical) synaptic input." [] +domain: CL:0000540 ! neuron +is_a: overlaps ! overlaps +transitive_over: part_of ! part of + +[Typedef] +id: RO:0002156 +name: derived by descent from +def: "d derived_by_descent_from a if d is specified by some genetic program that is sequence-inherited-from a genetic program that specifies a." [] +is_transitive: true +is_a: RO:0002320 ! evolutionarily related to +inverse_of: RO:0002157 ! has derived by descendant + +[Typedef] +id: RO:0002157 +name: has derived by descendant +def: "inverse of derived by descent from" [] +subset: RO:0002259 +is_transitive: true +is_a: RO:0002320 ! evolutionarily related to + +[Typedef] +id: RO:0002160 +name: only in taxon +def: "x only in taxon y if and only if x is in taxon y, and there is no other organism z such that y!=z a and x is in taxon z." [] +property_value: editor_note "The original intent was to treat this as a macro that expands to 'in taxon' only ?Y - however, this is not necessary if we instead have supplemental axioms that state that each pair of sibling tax have a disjointness axiom using the 'in taxon' property - e.g.\n\n 'in taxon' some Eukaryota DisjointWith 'in taxon' some Eubacteria" xsd:string +property_value: example_of_usage "lactation SubClassOf 'only in taxon' some 'Mammalia'" xsd:string +property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints +is_a: in_taxon ! in taxon + +[Typedef] +id: RO:0002163 +name: spatially disjoint from +def: "A is spatially_disjoint_from B if and only if they have no parts in common" [] +subset: ro-eco +property_value: curator_notes "Note that it would be possible to use the relation to label the relationship between a near infinite number of structures - between the rings of saturn and my left earlobe. The intent is that this is used for parsiomoniously for disambiguation purposes - for example, between siblings in a jointly exhaustive pairwise disjointness hierarchy" xsd:string +property_value: editor_note "There are two ways to encode this as a shortcut relation. The other possibility to use an annotation assertion between two classes, and expand this to a disjointness axiom. " xsd:string +property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern" xsd:anyURI +is_a: RO:0002323 ! mereotopologically related to + +[Typedef] +id: RO:0002206 +name: expressed in +def: "x expressed in y if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and the transcription of x is part of the gene expression process (iii) x is a mature gene product such as a protein, and x was translated or otherwise processes from a transcript that was transcribed as part of this gene expression process" [] +property_value: example_of_usage "'neural crest cell' SubClassOf expresses some 'Wnt1 gene'" xsd:string +domain: BFO:0000002 ! continuant +range: UBERON:0000465 ! material anatomical entity +is_a: RO:0002330 ! genomically related to +inverse_of: RO:0002292 ! expresses +transitive_over: part_of ! part of + +[Typedef] +id: RO:0002210 +name: directly develops into +def: "inverse of directly develops from" [] +subset: RO:0002259 +is_a: develops_into ! develops into + +[Typedef] +id: RO:0002211 +name: regulates +name: regulates (processual) +def: "p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q." [] subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension subset: http://purl.obolibrary.org/obo/valid_for_go_ontology subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0012003 -is_a: has_participant ! has participant -created_by: https://orcid.org/0000-0003-1813-6857 -creation_date: 2020-06-08T17:21:33Z +property_value: curator_notes "Regulation precludes parthood; the regulatory process may not be within the regulated process." xsd:string +domain: BFO:0000015 ! process +range: BFO:0000015 ! process +holds_over_chain: ends_with RO:0002211 +is_transitive: true +is_a: RO:0002411 ! causally upstream of +inverse_of: RO:0002334 ! regulated by + +[Typedef] +id: RO:0002212 +name: negatively regulates +def: "p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +holds_over_chain: ends_with RO:0002212 +is_a: RO:0002211 ! regulates (processual) +is_a: RO:0002305 ! causally upstream of, negative effect +inverse_of: RO:0002335 ! negatively regulated by + +[Typedef] +id: RO:0002213 +name: positively regulates +def: "p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +holds_over_chain: ends_with RO:0002213 +holds_over_chain: RO:0002212 RO:0002212 +is_transitive: true +is_a: RO:0002211 ! regulates (processual) +is_a: RO:0002304 ! causally upstream of, positive effect +inverse_of: RO:0002336 ! positively regulated by + +[Typedef] +id: RO:0002222 +name: temporally related to +comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. +subset: ro-eco +property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent + +[Typedef] +id: RO:0002231 +name: has start location +def: "x 'has starts location' y if and only if there exists some process z such that x 'starts with' z and z 'occurs in' y" [] +subset: ro-eco +domain: BFO:0000015 ! process +range: BFO:0000004 ! independent continuant +holds_over_chain: starts_with BFO:0000066 +is_a: RO:0002479 ! has part that occurs in + +[Typedef] +id: RO:0002232 +name: has end location +def: "x 'has end location' y if and only if there exists some process z such that x 'ends with' z and z 'occurs in' y" [] +subset: ro-eco +domain: BFO:0000015 ! process +range: BFO:0000004 ! independent continuant +holds_over_chain: ends_with BFO:0000066 +is_a: RO:0002479 ! has part that occurs in + +[Typedef] +id: RO:0002233 +name: has input +def: "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +subset: ro-eco +property_value: seeAlso "https://wiki.geneontology.org/Has_input" xsd:anyURI +domain: BFO:0000015 ! process +holds_over_chain: starts_with RO:0002233 +is_a: RO:0000057 ! has participant +inverse_of: input_of ! input of + +[Typedef] +id: RO:0002234 +name: has output +def: "p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +subset: ro-eco +property_value: seeAlso "https://wiki.geneontology.org/Has_output" xsd:anyURI +holds_over_chain: ends_with RO:0002234 +is_a: RO:0000057 ! has participant +inverse_of: output_of ! output of + +[Typedef] +id: RO:0002253 +name: has connecting branch +def: "inverse of connecting branch of" [] +subset: RO:0002259 +is_a: RO:0002375 ! in branching relationship with + +[Typedef] +id: RO:0002255 +name: developmentally contributes to +def: "inverse of has developmental contribution from" [] +subset: RO:0002259 +holds_over_chain: develops_into part_of +is_a: has_potential_to_developmentally_contribute_to ! has potential to developmentally contribute to +is_a: RO:0002286 ! developmentally succeeded by + +[Typedef] +id: RO:0002257 +name: developmentally induces +def: "Inverse of developmentally induced by" [] +is_a: RO:0002286 ! developmentally succeeded by +is_a: RO:0002386 ! has potential to developmentally induce + +[Typedef] +id: RO:0002258 +name: developmentally preceded by +def: "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p" [] +comment: This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from +property_value: curator_notes "In general you should not use this relation to make assertions - use one of the more specific relations below this one" xsd:string +property_value: editor_note "false" xsd:boolean +domain: BFO:0000002 ! continuant +range: BFO:0000002 ! continuant +is_a: RO:0002324 ! developmentally related to +inverse_of: RO:0002286 ! developmentally succeeded by [Typedef] -id: acts_upstream_of +id: RO:0002263 name: acts upstream of def: "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes." [] subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term -xref: RO:0002263 property_value: example_of_usage "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." xsd:string property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of -is_a: acts_upstream_of_or_within ! acts upstream of or within +is_a: RO:0002264 ! acts upstream of or within [Typedef] -id: acts_upstream_of_or_within +id: RO:0002264 name: acts upstream of or within def: "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process." [] subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term synonym: "affects" RELATED [] -xref: RO:0002264 property_value: example_of_usage "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." xsd:string property_value: seeAlso "https://wiki.geneontology.org/Acts_upstream_of_or_within" xsd:anyURI -is_a: causal_agent_in_process ! causal agent in process +is_a: RO:0002500 ! causal agent in process + +[Typedef] +id: RO:0002286 +name: developmentally succeeded by +def: "Inverse of developmentally preceded by" [] +is_a: RO:0002384 ! has developmental potential involving + +[Typedef] +id: RO:0002287 +name: part of developmental precursor of +property_value: example_of_usage "'hypopharyngeal eminence' SubClassOf 'part of precursor of' some tongue" xsd:string +holds_over_chain: part_of RO:0002210 +is_a: RO:0002286 ! developmentally succeeded by + +[Typedef] +id: RO:0002292 +name: expresses +def: "y expresses x if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and x was transcribed from a gene as part of the gene expression process (iii) x is a mature gene product (protein or RNA), and x was translated or otherwise processed from a transcript that was transcribed as part of the gene expression process." [] +is_a: RO:0002330 ! genomically related to + +[Typedef] +id: RO:0002295 +name: results in developmental progression of +def: "p results in the developmental progression of s iff p is a developmental process and s is an anatomical entity and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss)." [] +property_value: editor_note "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint." xsd:string +property_value: seeAlso Ontology:extensions +domain: GO:0008150 ! biological_process +range: UBERON:0001062 ! anatomical entity +is_a: RO:0002324 ! developmentally related to + +[Typedef] +id: RO:0002296 +name: results in development of +def: "p 'results in development of' c if and only if p is a developmental process and p results in the state of c changing from its initial state as a primordium or anlage through its mature state and to its final state." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +property_value: example_of_usage "every flower development (GO:0009908) results in development of some flower (PO:0009046)" xsd:string +is_a: RO:0002295 ! results in developmental progression of +is_a: RO:0040036 ! results in changes to anatomical or cellular structure + +[Typedef] +id: RO:0002297 +name: results in formation of anatomical entity +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +property_value: example_of_usage "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists." xsd:string +property_value: example_of_usage "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)" xsd:string +is_a: RO:0002234 ! has output +is_a: RO:0002295 ! results in developmental progression of +inverse_of: RO:0002354 ! formed as result of + +[Typedef] +id: RO:0002298 +name: results in morphogenesis of +def: "The relationship that links an entity with the process that results in the formation and shaping of that entity over time from an immature to a mature state." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +property_value: example_of_usage "an annotation of gene X to cell morphogenesis with results_in_morphogenesis_of CL:0000540 (neuron) means that at the end of the process an input neuron has attained its shape." xsd:string +property_value: example_of_usage "tongue morphogenesis (GO:0043587) results in morphogenesis of tongue (UBERON:0001723)" xsd:string +is_a: RO:0002295 ! results in developmental progression of +is_a: RO:0040036 ! results in changes to anatomical or cellular structure + +[Typedef] +id: RO:0002299 +name: results in maturation of +def: "The relationship that links an entity with a process that results in the progression of the entity over time that is independent of changes in it's shape and results in an end point state of that entity." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +property_value: example_of_usage " an annotation of gene X to cell maturation with results_in_maturation_of CL:0000057 (fibroblast) means that the fibroblast is mature at the end of the process" xsd:string +property_value: example_of_usage "bone maturation (GO:0070977) results_in_maturation_of bone (UBERON:0001474)" xsd:string +is_a: RO:0002295 ! results in developmental progression of +is_a: RO:0040036 ! results in changes to anatomical or cellular structure + +[Typedef] +id: RO:0002304 +name: causally upstream of, positive effect +def: "p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q." [] +comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_gocam +property_value: seeAlso https://wiki.geneontology.org/Causally_upstream_of,_positive_effect +is_a: RO:0002411 ! causally upstream of +is_a: RO:0004047 ! causally upstream of or within, positive effect + +[Typedef] +id: RO:0002305 +name: causally upstream of, negative effect +def: "p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_gocam +property_value: seeAlso https://wiki.geneontology.org/Causally_upstream_of,_negative_effect +is_a: RO:0002411 ! causally upstream of +is_a: RO:0004046 ! causally upstream of or within, negative effect + +[Typedef] +id: RO:0002314 +name: characteristic of part of +def: "q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w." [] +property_value: editor_note "Because part_of is transitive, inheres in is a sub-relation of characteristic of part of" xsd:string +property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/reflexivity/ +is_a: RO:0002502 ! depends on +transitive_over: part_of ! part of + +[Typedef] +id: RO:0002315 +name: results in acquisition of features of +def: "The relationship that links a specified entity with the process that results in an unspecified entity acquiring the features and characteristics of the specified entity" [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +property_value: example_of_usage "an annotation of gene X to cell differentiation with results_in_maturation_of CL:0000057 (fibroblast) means that at the end of the process the input cell that did not have features of a fibroblast, now has the features of a fibroblast." xsd:string +range: UBERON:0000061 ! anatomical structure +is_a: RO:0002295 ! results in developmental progression of +is_a: RO:0040036 ! results in changes to anatomical or cellular structure + +[Typedef] +id: RO:0002320 +name: evolutionarily related to +def: "A relationship that holds via some environmental process" [] +property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the process of evolution." xsd:string + +[Typedef] +id: RO:0002321 +name: ecologically related to +def: "A relationship that is mediated in some way by the environment or environmental feature (ENVO:00002297)" [] +subset: ro-eco +property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving ecological interactions" xsd:string +property_value: editor_note "Awaiting class for domain/range constraint, see: https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6" xsd:string + +[Typedef] +id: RO:0002323 +name: mereotopologically related to +def: "A mereological relationship or a topological relationship" [] +property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" xsd:string + +[Typedef] +id: RO:0002324 +name: developmentally related to +def: "A relationship that holds between entities participating in some developmental process (GO:0032502)" [] +property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" xsd:string + +[Typedef] +id: RO:0002329 +name: part of structure that is capable of +def: "this relation holds between c and p when c is part of some c', and c' is capable of p." [] +is_a: functionally_related_to ! functionally related to + +[Typedef] +id: RO:0002330 +name: genomically related to +def: "holds between two entities when some genome-level process such as gene expression is involved. This includes transcriptional, spliceosomal events. These relations can be used between either macromolecule entities (such as regions of nucleic acid) or between their abstract informational counterparts." [] +property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving the genome of an organism" xsd:string +domain: BFO:0000002 ! continuant +range: BFO:0000002 ! continuant + +[Typedef] +id: RO:0002332 +name: regulates levels of +def: "p regulates levels of c if p regulates some amount (PATO:0000070) of c" [] +property_value: example_of_usage "every cellular sphingolipid homeostasis process regulates_level_of some sphingolipid" xsd:string +domain: BFO:0000015 ! process +range: BFO:0000040 ! material entity +is_a: functionally_related_to ! functionally related to + +[Typedef] +id: RO:0002334 +name: regulated by +def: "inverse of regulates" [] +subset: RO:0002259 +domain: BFO:0000015 ! process +range: BFO:0000015 ! process +is_transitive: true +is_a: RO:0002427 ! causally downstream of or within + +[Typedef] +id: RO:0002335 +name: negatively regulated by +def: "inverse of negatively regulates" [] +subset: RO:0002259 +is_a: RO:0002334 ! regulated by + +[Typedef] +id: RO:0002336 +name: positively regulated by +def: "inverse of positively regulates" [] +subset: RO:0002259 +is_a: RO:0002334 ! regulated by + +[Typedef] +id: RO:0002337 +name: related via localization to +def: "A relationship that holds via some process of localization" [] +property_value: curator_notes "Do not use this relation directly. It is a grouping relation." xsd:string +domain: BFO:0000015 ! process +range: BFO:0000002 ! continuant + +[Typedef] +id: RO:0002338 +name: has target start location +def: "This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from some initial location l to some destination." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +is_a: RO:0002344 ! results in transport to from or in +transitive_over: part_of ! part of + +[Typedef] +id: RO:0002339 +name: has target end location +def: "This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from a an initial location to some destination l." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +is_a: RO:0002344 ! results in transport to from or in +transitive_over: part_of ! part of + +[Typedef] +id: RO:0002341 +name: results in transport along +def: "Holds between p and l when p is a transportation or localization process and the outcome of this process is to move c from one location to another, and the route taken by c follows a path that is aligned_with l " [] +is_a: RO:0002337 ! related via localization to + +[Typedef] +id: RO:0002342 +name: results in transport across +def: "Holds between p and m when p is a transportation or localization process and the outcome of this process is to move c from one location to another, and the route taken by c follows a path that crosses m." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +is_a: RO:0002021 ! occurs across +is_a: RO:0002344 ! results in transport to from or in + +[Typedef] +id: RO:0002343 +name: results in growth of +property_value: example_of_usage "'pollen tube growth' results_in growth_of some 'pollen tube'" xsd:string +is_a: RO:0002295 ! results in developmental progression of +is_a: RO:0040036 ! results in changes to anatomical or cellular structure + +[Typedef] +id: RO:0002344 +name: results in transport to from or in +property_value: example_of_usage "'mitochondrial transport' results_in_transport_to_from_or_in some mitochondrion (GO:0005739)" xsd:string +is_a: RO:0002337 ! related via localization to + +[Typedef] +id: RO:0002350 +name: member of +def: "is member of is a mereological relation between a item and a collection." [] +property_value: example_of_usage "An organism that is a member of a population of organisms" xsd:string +is_a: part_of ! part of +inverse_of: has_member ! has member + +[Typedef] +id: RO:0002354 +name: formed as result of +is_a: output_of ! output of + +[Typedef] +id: RO:0002375 +name: in branching relationship with +def: "A relationship that holds between two material entities in a system of connected structures, where the branching relationship holds based on properties of the connecting network." [] +property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving branching relationships" xsd:string +property_value: curator_notes "This relation can be used for geographic features (e.g. rivers) as well as anatomical structures (plant branches and roots, leaf veins, animal veins, arteries, nerves)" xsd:string +property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/branching_part_of.png +property_value: seeAlso "https://github.com/obophenotype/uberon/issues/170" xsd:anyURI +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity +is_a: RO:0002323 ! mereotopologically related to + +[Typedef] +id: RO:0002379 +name: spatially coextensive with +def: "x spatially_coextensive_with y if and inly if x and y have the same location" [] +property_value: curator_notes "This relation is added for formal completeness. It is unlikely to be used in many practical scenarios" xsd:string +property_value: example_of_usage "A lump of clay and a statue" xsd:string +is_a: overlaps ! overlaps + +[Typedef] +id: RO:0002384 +name: has developmental potential involving +def: "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction)." [] +domain: UBERON:0001062 ! anatomical entity +range: UBERON:0001062 ! anatomical entity +is_a: RO:0002324 ! developmentally related to + +[Typedef] +id: RO:0002386 +name: has potential to developmentally induce +def: "x has potential to developmentally induce y iff x developmentally induces y or x is capable of developmentally inducing y" [] +is_a: RO:0002384 ! has developmental potential involving + +[Typedef] +id: RO:0002388 +name: has potential to directly develop into +def: "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y" [] +is_a: has_potential_to_develop_into ! has potential to develop into + +[Typedef] +id: RO:0002404 +name: causally downstream of +def: "inverse of upstream of" [] +is_a: preceded_by ! preceded by +is_a: RO:0002427 ! causally downstream of or within +inverse_of: RO:0002411 ! causally upstream of + +[Typedef] +id: RO:0002410 +name: causally related to +def: "relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause." [https://en.wikipedia.org/wiki/Causality] +property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +property_value: editor_note "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative?\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." xsd:string + +[Typedef] +id: RO:0002411 +name: causally upstream of +def: "p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_gocam +is_transitive: true +is_a: precedes ! precedes +is_a: RO:0002418 ! causally upstream of or within + +[Typedef] +id: RO:0002418 +name: causally upstream of or within +def: "p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q." [] +synonym: "affects" RELATED [] +property_value: editor_note "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" xsd:string +is_transitive: true +is_a: RO:0002501 ! causal relation between processes +inverse_of: RO:0002427 ! causally downstream of or within + +[Typedef] +id: RO:0002427 +name: causally downstream of or within +def: "inverse of causally upstream of or within" [] +subset: RO:0002259 +is_transitive: true +is_a: RO:0002501 ! causal relation between processes + +[Typedef] +id: RO:0002428 +name: involved in regulation of +def: "c involved in regulation of p if c is involved in some p' and p' regulates some p" [] +is_a: RO:0002263 ! acts upstream of +is_a: RO:0002431 ! involved in or involved in regulation of + +[Typedef] +id: RO:0002431 +name: involved in or involved in regulation of +def: "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p" [] +property_value: editor_note "OWL does not allow defining object properties via a Union" xsd:string +is_a: functionally_related_to ! functionally related to +is_a: RO:0002264 ! acts upstream of or within +is_a: RO:0002500 ! causal agent in process + +[Typedef] +id: RO:0002476 +name: child nucleus of +def: "c is a child nucleus of d if and only if c and d are both nuclei and parts of cells c' and d', where c' is derived from d' by mitosis and the genetic material in c is a copy of the generic material in d" [] +property_value: curator_notes "This relation is primarily used in the worm anatomy ontology for representing lineage at the level of nuclei. However, it is applicable to any organismal cell lineage." xsd:string +property_value: example_of_usage "ABal nucleus child nucleus of ABa nucleus (in C elegans)" xsd:string +domain: GO:0005634 ! nucleus +range: GO:0005634 ! nucleus +is_a: RO:0002258 ! developmentally preceded by + +[Typedef] +id: RO:0002477 +name: child nucleus of in hermaphrodite +def: "A child nucleus relationship in which the cells are part of a hermaphroditic organism" [] +is_a: RO:0002476 ! child nucleus of + +[Typedef] +id: RO:0002478 +name: child nucleus of in male +def: "A child nucleus relationship in which the cells are part of a male organism" [] +is_a: RO:0002476 ! child nucleus of + +[Typedef] +id: RO:0002479 +name: has part that occurs in +def: "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c." [] +subset: ro-eco +domain: BFO:0000003 ! occurrent +range: BFO:0000004 ! independent continuant + +[Typedef] +id: RO:0002485 +name: receives input from +property_value: editor_note "See notes for inverse relation" xsd:string +is_a: connected_to ! connected to +inverse_of: RO:0002486 ! sends output to + +[Typedef] +id: RO:0002486 +name: sends output to +property_value: editor_note "This is an exploratory relation. The label is taken from the FMA. It needs aligned with the neuron-specific relations such as has postsynaptic terminal in." xsd:string +is_a: connected_to ! connected to + +[Typedef] +id: RO:0002487 +name: relation between physical entity and a process or stage +property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, typically connecting an anatomical entity to a biological process or developmental stage." xsd:string +domain: BFO:0000004 ! independent continuant +range: BFO:0000003 ! occurrent + +[Typedef] +id: RO:0002490 +name: existence overlaps +def: "x existence overlaps y if and only if either (a) the start of x is part of y or (b) the end of x is part of y. Formally: x existence starts and ends during y iff (α(x) >= α(y) & α(x) <= ω(y)) OR (ω(x) <= ω(y) & ω(x) >= α(y))" [] +comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription. +is_a: RO:0002487 ! relation between physical entity and a process or stage + +[Typedef] +id: RO:0002500 +name: causal agent in process +def: "A relationship between a material entity and a process where the material entity has some causal role that influences the process" [] +is_a: RO:0002595 ! causal relation between material entity and a process +inverse_of: RO:0002608 ! process has causal agent + +[Typedef] +id: RO:0002501 +name: causal relation between processes +def: "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q." [] +property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0002502 +name: depends on +property_value: seeAlso BFO:0000169 + +[Typedef] +id: RO:0002505 +name: has intermediate +def: "p has intermediate c if and only if p has parts p1, p2 and p1 has output c, and p2 has input c" [] +subset: ro-eco +property_value: example_of_usage "'lysine biosynthetic process via diaminopimelate' SubClassOf has_intermediate some diaminopimelate" xsd:string +is_a: RO:0000057 ! has participant + +[Typedef] +id: RO:0002565 +name: results in movement of +def: "Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c" [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +property_value: curator_notes "" xsd:string +is_a: RO:0040036 ! results in changes to anatomical or cellular structure + +[Typedef] +id: RO:0002567 +name: biomechanically related to +def: "A relation that holds between elements of a musculoskeletal system or its analogs." [] +property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the biomechanical processes." xsd:string +domain: UBERON:0000061 ! anatomical structure +range: UBERON:0000061 ! anatomical structure +is_a: functionally_related_to ! functionally related to + +[Typedef] +id: RO:0002584 +name: has part structure that is capable of +def: "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p" [] +property_value: example_of_usage "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" xsd:string +holds_over_chain: has_part capable_of +is_a: functionally_related_to ! functionally related to +is_a: RO:0002595 ! causal relation between material entity and a process + +[Typedef] +id: RO:0002586 +name: results in breakdown of +def: "p results in breakdown of c if and only if the execution of p leads to c no longer being present at the end of p" [] +is_a: RO:0002233 ! has input + +[Typedef] +id: RO:0002588 +name: results in assembly of +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +is_a: RO:0002297 ! results in formation of anatomical entity +is_a: RO:0002592 ! results in organization of + +[Typedef] +id: RO:0002590 +name: results in disassembly of +is_a: RO:0002586 ! results in breakdown of +is_a: RO:0002592 ! results in organization of + +[Typedef] +id: RO:0002592 +name: results in organization of +def: "p results in organization of c iff p results in the assembly, arrangement of constituent parts, or disassembly of c" [] +is_a: RO:0040036 ! results in changes to anatomical or cellular structure + +[Typedef] +id: RO:0002595 +name: causal relation between material entity and a process +def: "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity." [] +property_value: editor_note "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +domain: BFO:0000040 ! material entity +range: BFO:0000015 ! process +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0002596 +name: capable of regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a regulates p." [] +property_value: example_of_usage "pyrethroid -> growth" xsd:string +holds_over_chain: capable_of RO:0002211 +is_a: RO:0002500 ! causal agent in process + +[Typedef] +id: RO:0002597 +name: capable of negatively regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p." [] +holds_over_chain: capable_of RO:0002212 +is_a: RO:0002596 ! capable of regulating + +[Typedef] +id: RO:0002598 +name: capable of positively regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p." [] +property_value: example_of_usage "renin -> arteriolar smooth muscle contraction" xsd:string +holds_over_chain: capable_of RO:0002213 +is_a: RO:0002596 ! capable of regulating + +[Typedef] +id: RO:0002608 +name: process has causal agent +def: "Inverse of 'causal agent in process'" [] +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0004007 +name: has primary input or output +def: "p 'has primary input ot output' c iff either (a) p 'has primary input' c or (b) p 'has primary output' c." [] +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +is_a: RO:0000057 ! has participant +created_by: https://orcid.org/0000-0002-6601-2165 +creation_date: 2018-12-13T11:26:17Z + +[Typedef] +id: RO:0004008 +name: has primary output +def: "p has primary output c if (a) p has output c and (b) the goal of process is to modify, produce, or transform c." [GOC:dph, GOC:kva, GOC:pt, https://orcid.org/0000-0002-6601-2165] {comment="PMID:27812932"} +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +is_a: RO:0002234 ! has output +is_a: RO:0004007 ! has primary input or output +created_by: https://orcid.org/0000-0002-6601-2165 +creation_date: 2018-12-13T11:26:32Z + +[Typedef] +id: RO:0004009 +name: has primary input +def: "p has primary input c if (a) p has input c and (b) the goal of process is to modify, consume, or transform c." [GOC:dph, GOC:kva, GOC:pt, https://orcid.org/0000-0002-6601-2165] {comment="PMID:27812932"} +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +is_a: RO:0002233 ! has input +is_a: RO:0004007 ! has primary input or output +created_by: https://orcid.org/0000-0002-6601-2165 +creation_date: 2018-12-13T11:26:56Z + +[Typedef] +id: RO:0004046 +name: causally upstream of or within, negative effect +property_value: seeAlso "https://wiki.geneontology.org/Causally_upstream_of_or_within,_negative_effect" xsd:anyURI +is_a: RO:0002418 ! causally upstream of or within +created_by: https://orcid.org/0000-0002-6601-2165 +creation_date: 2018-03-13T23:55:05Z + +[Typedef] +id: RO:0004047 +name: causally upstream of or within, positive effect +property_value: seeAlso https://wiki.geneontology.org/Causally_upstream_of_or_within,_positive_effect +is_a: RO:0002418 ! causally upstream of or within +created_by: https://orcid.org/0000-0002-6601-2165 +creation_date: 2018-03-13T23:55:19Z + +[Typedef] +id: RO:0012003 +name: acts on population of +def: "p acts on population of c iff c' is a collection, has members of type c, and p has participant c" [] +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +is_a: RO:0000057 ! has participant +created_by: https://orcid.org/0000-0003-1813-6857 +creation_date: 2020-06-08T17:21:33Z + +[Typedef] +id: RO:0012008 +name: results in fusion of +subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension +subset: http://purl.obolibrary.org/obo/valid_for_go_ontology +subset: http://purl.obolibrary.org/obo/valid_for_gocam +is_a: RO:0002592 ! results in organization of +created_by: https://orcid.org/0000-0003-1813-6857 +creation_date: 2021-02-26T07:28:29Z + +[Typedef] +id: RO:0013001 +name: has synaptic IO in region +def: "A relationship between a neuron and a region, where the neuron has a functionally relevant number of input and/or output synapses in that region." [] +synonym: "has synaptic input or output in" EXACT [] +is_a: RO:0002130 ! has synaptic terminal in +transitive_over: part_of ! part of +created_by: https://orcid.org/0000-0002-1373-1705 +creation_date: 2020-07-17T09:26:52Z + +[Typedef] +id: RO:0015011 +name: has cross section +def: "s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2." [https://orcid.org/0000-0002-6601-2165] +comment: Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round. + +[Typedef] +id: RO:0015012 +name: reciprocal of +def: "q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e." [https://orcid.org/0000-0002-6601-2165] +comment: There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality. + +[Typedef] +id: RO:0015015 +name: has high plasma membrane amount +def: "A relation between a cell and molecule or complex such that every instance of the cell has a high number of instances of that molecule expressed on the cell surface." [PMID:19243617] +property_value: dc-contributor https://orcid.org/0000-0003-1617-8244 +property_value: dc-contributor https://orcid.org/0000-0003-1940-6740 +property_value: example_of_usage "'Ly-76 high positive erythrocyte' equivalent to 'enucleate erythrocyte' and (has_high_plasma_membrane_amount some 'lymphocyte antigen 76 (mouse)')" xsd:string +domain: CL:0000000 ! cell +is_a: RO:0002104 ! has plasma membrane part + +[Typedef] +id: RO:0015016 +name: has low plasma membrane amount +def: "A relation between a cell and molecule or complex such that every instance of the cell has a low number of instances of that molecule expressed on the cell surface." [PMID:19243617] +property_value: dc-contributor https://orcid.org/0000-0003-1617-8244 +property_value: dc-contributor https://orcid.org/0000-0003-1940-6740 +property_value: example_of_usage "'DN2b thymocyte' equivalent to 'DN2 thymocyte' and (has_low_plasma_membrane_amount some 'mast/stem cell growth factor receptor')" xsd:string +domain: CL:0000000 ! cell +is_a: RO:0002104 ! has plasma membrane part + +[Typedef] +id: RO:0017001 +name: device utilizes material +def: "X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y." [] +synonym: "utilizes" BROAD [] +property_value: curator_notes "A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input." xsd:string +property_value: curator_notes "See github ticket https://github.com/oborel/obo-relations/issues/497" xsd:string +property_value: dc-contributor https://orcid.org/0000-0001-9625-1899 +property_value: dc-contributor https://orcid.org/0000-0003-2620-0345 +property_value: example_of_usage "A diagnostic testing device utilizes a specimen." xsd:string +holds_over_chain: capable_of RO:0002233 +creation_date: 2021-11-08T12:00:00Z + +[Typedef] +id: RO:0019000 +name: regulates characteristic +def: "A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C." [] +property_value: dc-contributor https://orcid.org/0000-0002-8688-6599 +domain: BFO:0000015 ! process +range: PATO:0000001 ! quality +holds_over_chain: RO:0002211 RO:0019000 +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0020101 +name: vessel supplies blood to +def: "x vessel supplies blood to y if and only if x is a vessel that supplies blood directly or indirectly to an anatomical structure y." [] +property_value: dc-contributor https://orcid.org/0000-0001-6677-8489 +property_value: dcterms-date "2024-02-01T10:09:22Z" xsd:dateTime +property_value: example_of_usage "brachial artery vessel supplies blood to brachialis muscle" xsd:string +domain: UBERON:0001981 ! blood vessel +range: UBERON:0000061 ! anatomical structure +is_a: supplies ! supplies + +[Typedef] +id: RO:0020102 +name: vessel drains blood from +def: "x vessel drains blood from y if and only if x is a vessel that drains blood directly or indirectly from an anatomical structure y." [] +property_value: dc-contributor https://orcid.org/0000-0001-6677-8489 +property_value: dcterms-date "2024-02-01T10:09:41Z" xsd:dateTime +property_value: example_of_usage "cystic vein vessel drains blood from gallbladder" xsd:string +domain: UBERON:0001981 ! blood vessel +range: UBERON:0000061 ! anatomical structure +is_a: drains ! drains + +[Typedef] +id: RO:0020103 +name: directly supplies and drains +def: "x directly supplies and drains y if and only if x is a capillary, y is an anatomical entity, and x directly supplies and drains y." [] +property_value: dc-contributor https://orcid.org/0000-0001-6677-8489 +property_value: dcterms-date "2024-02-01T10:09:59Z" xsd:dateTime +property_value: example_of_usage "alveolar capillary directly supplies and drains some alveolus" xsd:string +domain: UBERON:0001982 ! capillary +range: UBERON:0000061 ! anatomical structure +is_a: drains ! drains +is_a: supplies ! supplies + +[Typedef] +id: RO:0040036 +name: results in changes to anatomical or cellular structure +def: "p has anatomical participant c iff p has participant c, and c is an anatomical entity" [] +is_a: RO:0000057 ! has participant +created_by: https://orcid.org/0000-0002-6601-2165 +creation_date: 2018-09-26T01:08:58Z + +[Typedef] +id: aboral_to +name: aboral to +namespace: spatial +def: "nearer to the aboral opening of the organism, on the oral-aboral axis." [BSPO:cjm] +xref: BSPO:0015202 +is_transitive: true + +[Typedef] +id: action_notes +name: actions_notes +def: "Notes on how instances of this class functon biomechanically." [https://orcid.org/0000-0002-6601-2165] +xref: UBPROP:0000014 +property_value: editor_note "This annotation property may be replaced with an annotation property from an external ontology such as IAO" xsd:string +is_metadata_tag: true [Typedef] id: adjacent_to @@ -404243,13 +430386,11 @@ property_value: example_of_usage "The skin of the forelimb is adjacent to the sk domain: BFO:0000004 ! independent continuant range: BFO:0000004 ! independent continuant is_symmetric: true -is_a: spatially_disjoint_from ! spatially disjoint from +is_a: RO:0002163 ! spatially disjoint from [Typedef] id: ambiguous_for_taxon name: ambiguous for taxon -name: ambiguous_for_taxon -def: "S ambiguous_for_taxon T if the class S does not have a clear referent in taxon T. An example would be the class 'manual digit 1', which encompasses a homology hypotheses that is accepted for some species (e.g. human and mouse), but does not have a clear referent in Aves - the referent is dependent on the hypothesis embraced, and also on the ontogenetic stage." [PHENOSCPAE:asilomar_mtg] def: "S ambiguous_for_taxon T if the class S does not have a clear referent in taxon T. An example would be the class 'manual digit 1', which encompasses a homology hypotheses that is accepted for some species (e.g. human and mouse), but does not have a clear referent in Aves - the referent is dependent on the hypothesis embraced, and also on the ontogenetic stage. [PHENOSCPAE:asilomar_mtg]" [] xref: RO:0002173 property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints @@ -404316,8 +430457,8 @@ def: "a is attached to part of b if a is attached to b, or a is attached to some xref: RO:0002177 domain: UBERON:0000061 ! anatomical structure range: UBERON:0000061 ! anatomical structure -is_a: biomechanically_related_to ! biomechanically related to -is_a: mereotopologically_related_to ! mereotopologically related to +is_a: RO:0002323 ! mereotopologically related to +is_a: RO:0002567 ! biomechanically related to [Typedef] id: axiom_lost_from_external_ontology @@ -404327,24 +430468,6 @@ comment: This annotation property may be replaced with an annotation property fr xref: UBPROP:0000002 is_metadata_tag: true -[Typedef] -id: before_or_simultaneous_with -name: before or simultaneous with -comment: Primitive instance level timing relation between events -subset: ro-eco -xref: RO:0002081 -is_a: temporally_related_to ! temporally related to - -[Typedef] -id: biomechanically_related_to -name: biomechanically related to -def: "A relation that holds between elements of a musculoskeletal system or its analogs." [] -xref: RO:0002567 -property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the biomechanical processes." xsd:string -domain: UBERON:0000061 ! anatomical structure -range: UBERON:0000061 ! anatomical structure -is_a: functionally_related_to ! functionally related to - [Typedef] id: bounding_layer_of name: bounding layer of @@ -404364,8 +430487,8 @@ xref: RO:0002380 property_value: example_of_usage "In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, B1 is a (direct) branching part of T. B1-1, B1-2, and B1-3 are also branching parts of T, but these are considered indirect branching parts as they do not directly connect to the main stem S" xsd:string property_value: seeAlso "FMA:85994" xsd:string property_value: seeAlso https://github.com/obophenotype/uberon/issues/2212 -is_a: in_branching_relationship_with ! in branching relationship with is_a: part_of ! part of +is_a: RO:0002375 ! in branching relationship with inverse_of: has_branching_part ! has branching part [Typedef] @@ -404385,157 +430508,14 @@ domain: BFO:0000004 ! independent continuant range: BFO:0000015 ! process is_a: capable_of_part_of ! capable of part of -[Typedef] -id: capable_of_negatively_regulating -name: capable of negatively regulating -def: "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p." [] -xref: RO:0002597 -holds_over_chain: capable_of negatively_regulates -is_a: capable_of_regulating ! capable of regulating - [Typedef] id: capable_of_part_of name: capable of part of def: "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p." [] xref: RO:0002216 property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/reflexivity/ -is_a: causal_agent_in_process ! causal agent in process is_a: functionally_related_to ! functionally related to - -[Typedef] -id: capable_of_positively_regulating -name: capable of positively regulating -def: "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p." [] -xref: RO:0002598 -property_value: example_of_usage "renin -> arteriolar smooth muscle contraction" xsd:string -holds_over_chain: capable_of positively_regulates -is_a: capable_of_regulating ! capable of regulating - -[Typedef] -id: capable_of_regulating -name: capable of regulating -def: "Holds between c and p if and only if c is capable of some activity a, and a regulates p." [] -xref: RO:0002596 -property_value: example_of_usage "pyrethroid -> growth" xsd:string -holds_over_chain: capable_of regulates -is_a: causal_agent_in_process ! causal agent in process - -[Typedef] -id: causal_agent_in_process -name: causal agent in process -def: "A relationship between a material entity and a process where the material entity has some causal role that influences the process" [] -xref: RO:0002500 -is_a: causal_relation_between_material_entity_and_a_process ! causal relation between material entity and a process -inverse_of: process_has_causal_agent ! process has causal agent - -[Typedef] -id: causal_relation_between_material_entity_and_a_process -name: causal relation between material entity and a process -def: "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity." [] -xref: RO:0002595 -property_value: editor_note "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string -domain: BFO:0000040 ! material entity -range: BFO:0000015 ! process -is_a: causally_related_to ! causally related to - -[Typedef] -id: causal_relation_between_processes -name: causal relation between processes -def: "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q." [] -xref: RO:0002501 -property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string -domain: BFO:0000003 ! occurrent -range: BFO:0000003 ! occurrent -is_a: causally_related_to ! causally related to - -[Typedef] -id: causally_downstream_of -name: causally downstream of -def: "inverse of upstream of" [] -xref: RO:0002404 -is_a: causally_downstream_of_or_within ! causally downstream of or within -is_a: preceded_by ! preceded by -inverse_of: causally_upstream_of ! causally upstream of - -[Typedef] -id: causally_downstream_of_or_within -name: causally downstream of or within -def: "inverse of causally upstream of or within" [] -subset: RO:0002259 -xref: RO:0002427 -is_transitive: true -is_a: causal_relation_between_processes ! causal relation between processes - -[Typedef] -id: causally_related_to -name: causally related to -def: "relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause." [https://en.wikipedia.org/wiki/Causality] -xref: RO:0002410 -property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string -property_value: editor_note "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative?\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." xsd:string - -[Typedef] -id: causally_upstream_of -name: causally upstream of -def: "p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002411 -is_transitive: true -is_a: causally_upstream_of_or_within ! causally upstream of or within -is_a: precedes ! precedes - -[Typedef] -id: causally_upstream_of,_negative_effect -name: causally upstream of, negative effect -def: "p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002305 -property_value: seeAlso https://wiki.geneontology.org/Causally_upstream_of,_negative_effect -is_a: causally_upstream_of ! causally upstream of -is_a: causally_upstream_of_or_within,_negative_effect ! causally upstream of or within, negative effect - -[Typedef] -id: causally_upstream_of,_positive_effect -name: causally upstream of, positive effect -def: "p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q." [] -comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002304 -property_value: seeAlso https://wiki.geneontology.org/Causally_upstream_of,_positive_effect -is_a: causally_upstream_of ! causally upstream of -is_a: causally_upstream_of_or_within,_positive_effect ! causally upstream of or within, positive effect - -[Typedef] -id: causally_upstream_of_or_within -name: causally upstream of or within -def: "p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q." [] -synonym: "affects" RELATED [] -xref: RO:0002418 -property_value: editor_note "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" xsd:string -is_transitive: true -is_a: causal_relation_between_processes ! causal relation between processes -inverse_of: causally_downstream_of_or_within ! causally downstream of or within - -[Typedef] -id: causally_upstream_of_or_within,_negative_effect -name: causally upstream of or within, negative effect -xref: RO:0004046 -property_value: seeAlso "https://wiki.geneontology.org/Causally_upstream_of_or_within,_negative_effect" xsd:anyURI -is_a: causally_upstream_of_or_within ! causally upstream of or within -created_by: https://orcid.org/0000-0002-6601-2165 -creation_date: 2018-03-13T23:55:05Z - -[Typedef] -id: causally_upstream_of_or_within,_positive_effect -name: causally upstream of or within, positive effect -xref: RO:0004047 -property_value: seeAlso https://wiki.geneontology.org/Causally_upstream_of_or_within,_positive_effect -is_a: causally_upstream_of_or_within ! causally upstream of or within -created_by: https://orcid.org/0000-0002-6601-2165 -creation_date: 2018-03-13T23:55:19Z +is_a: RO:0002500 ! causal agent in process [Typedef] id: channel_for @@ -404554,53 +430534,6 @@ id: channels_into name: channels_into is_transitive: true -[Typedef] -id: characteristic_of -name: characteristic of -def: "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence." [] -comment: Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing. -xref: RO:0000052 -property_value: example_of_usage "this fragility is a characteristic of this vase" xsd:string -property_value: example_of_usage "this red color is a characteristic of this apple" xsd:string -is_functional: true -is_a: characteristic_of_part_of ! characteristic of part of -inverse_of: has_characteristic ! has characteristic - -[Typedef] -id: characteristic_of_part_of -name: characteristic of part of -def: "q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w." [] -xref: RO:0002314 -property_value: editor_note "Because part_of is transitive, inheres in is a sub-relation of characteristic of part of" xsd:string -property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/reflexivity/ -is_a: depends_on ! depends on -transitive_over: part_of ! part of - -[Typedef] -id: child_nucleus_of -name: child nucleus of -def: "c is a child nucleus of d if and only if c and d are both nuclei and parts of cells c' and d', where c' is derived from d' by mitosis and the genetic material in c is a copy of the generic material in d" [] -xref: RO:0002476 -property_value: curator_notes "This relation is primarily used in the worm anatomy ontology for representing lineage at the level of nuclei. However, it is applicable to any organismal cell lineage." xsd:string -property_value: example_of_usage "ABal nucleus child nucleus of ABa nucleus (in C elegans)" xsd:string -domain: GO:0005634 ! nucleus -range: GO:0005634 ! nucleus -is_a: developmentally_preceded_by ! developmentally preceded by - -[Typedef] -id: child_nucleus_of_in_hermaphrodite -name: child nucleus of in hermaphrodite -def: "A child nucleus relationship in which the cells are part of a hermaphroditic organism" [] -xref: RO:0002477 -is_a: child_nucleus_of ! child nucleus of - -[Typedef] -id: child_nucleus_of_in_male -name: child nucleus of in male -def: "A child nucleus relationship in which the cells are part of a male organism" [] -xref: RO:0002478 -is_a: child_nucleus_of ! child nucleus of - [Typedef] id: composed_primarily_of name: composed primarily of @@ -404629,7 +430562,7 @@ name: confers advantage in subset: ro-eco xref: RO:0002322 property_value: editor_note "An experimental relation currently used to connect a feature possessed by an organism (e.g. anatomical structure, biological process, phenotype or quality) to a habitat or environment in which that feature is well suited, adapted or provides a reproductive advantage for the organism. For example, fins to an aquatic environment. Usually this will mean that the structure is adapted for this environment, but we avoid saying this directly - primitive forms of the structure may not have evolved specifically for that environment (for example, early wings were not necessarily adapted for an aerial environment). Note also that this is a statement about the general class of structures - not every instance of a limb need confer an advantage for a terrestrial environment, e.g. if the limb is vestigial." xsd:string -is_a: ecologically_related_to ! ecologically related to +is_a: RO:0002321 ! ecologically related to [Typedef] id: connected_to @@ -404639,7 +430572,7 @@ xref: RO:0002170 property_value: example_of_usage "a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones)." xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Connectivity-Design-Pattern" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-articulations-Design-Pattern" xsd:anyURI -is_a: mereotopologically_related_to ! mereotopologically related to +is_a: RO:0002323 ! mereotopologically related to [Typedef] id: connecting_branch_of @@ -404649,8 +430582,8 @@ xref: RO:0002252 property_value: example_of_usage "In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, B1 is connecting branch of S, and B1-1 as a connecting branch of B1." xsd:string property_value: seeAlso https://github.com/obophenotype/uberon/issues/2212 is_a: connected_to ! connected to -is_a: in_branching_relationship_with ! in branching relationship with -inverse_of: has_connecting_branch ! has connecting branch +is_a: RO:0002375 ! in branching relationship with +inverse_of: RO:0002253 ! has connecting branch [Typedef] id: connects @@ -404662,7 +430595,15 @@ property_value: example_of_usage "The M8 connects Glasgow and Edinburgh" xsd:str property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Connectivity-Design-Pattern" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-articulations-Design-Pattern" xsd:anyURI domain: BFO:0000004 ! independent continuant -is_a: mereotopologically_related_to ! mereotopologically related to +is_a: RO:0002323 ! mereotopologically related to + +[Typedef] +id: contains +name: contains +name: obsolete contains +xref: RO:0001019 +property_value: seeAlso https://github.com/oborel/obo-relations/issues/693 +is_obsolete: true [Typedef] id: contains_process @@ -404681,7 +430622,7 @@ property_value: seeAlso "FMA:85972" xsd:string domain: BFO:0000004 ! independent continuant range: BFO:0000004 ! independent continuant is_symmetric: true -is_a: mereotopologically_related_to ! mereotopologically related to +is_a: RO:0002323 ! mereotopologically related to [Typedef] id: contributes_to_morphology_of @@ -404768,37 +430709,12 @@ def: "Syntax: upper/lower = I.C.P.M / I.C.P.M. When used with generic tooth clas xref: UBPROP:0000113 is_metadata_tag: true -[Typedef] -id: depends_on -name: depends on -xref: RO:0002502 -property_value: seeAlso BFO:0000169 - [Typedef] id: depiction name: depiction xref: http://xmlns.com/foaf/0.1/depiction is_metadata_tag: true -[Typedef] -id: derived_by_descent_from -name: derived by descent from -def: "d derived_by_descent_from a if d is specified by some genetic program that is sequence-inherited-from a genetic program that specifies a." [] -xref: RO:0002156 -is_transitive: true -is_a: evolutionarily_related_to ! evolutionarily related to -inverse_of: has_derived_by_descendant ! has derived by descendant - -[Typedef] -id: derived_from_ancestral_fusion_of -name: derived from ancestral fusion of -def: "x has_fused_element y iff: there exists some z : x has_part z, z homologous_to y, and y is a distinct element, the boundary between x and z is largely fiat" [] -comment: A has_fused_element B does not imply that A has_part some B: rather than A has_part some B', where B' that has some evolutionary relationship to B. -synonym: "has fused element" BROAD [] -xref: RO:0002374 -property_value: example_of_usage "false" xsd:boolean -is_a: derived_by_descent_from ! derived by descent from - [Typedef] id: development_notes name: development_notes @@ -404807,16 +430723,6 @@ xref: UBPROP:0000011 property_value: editor_note "This annotation property may be replaced with an annotation property from an external ontology such as IAO" xsd:string is_metadata_tag: true -[Typedef] -id: developmentally_contributes_to -name: developmentally contributes to -def: "inverse of has developmental contribution from" [] -subset: RO:0002259 -xref: RO:0002255 -holds_over_chain: develops_into part_of -is_a: developmentally_succeeded_by ! developmentally succeeded by -is_a: has_potential_to_developmentally_contribute_to ! has potential to developmentally contribute to - [Typedef] id: developmentally_induced_by name: developmentally induced by @@ -404825,36 +430731,8 @@ xref: RO:0002256 property_value: curator_notes "We place this under 'developmentally preceded by'. This placement should be examined in the context of reciprocal inductions[cjm]" xsd:string domain: UBERON:0000465 ! material anatomical entity range: UBERON:0000465 ! material anatomical entity -is_a: developmentally_preceded_by ! developmentally preceded by -inverse_of: developmentally_induces ! developmentally induces - -[Typedef] -id: developmentally_induces -name: developmentally induces -def: "Inverse of developmentally induced by" [] -xref: RO:0002257 -is_a: developmentally_succeeded_by ! developmentally succeeded by -is_a: has_potential_to_developmentally_induce ! has potential to developmentally induce - -[Typedef] -id: developmentally_preceded_by -name: developmentally preceded by -def: "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p" [] -comment: This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from -xref: RO:0002258 -property_value: curator_notes "In general you should not use this relation to make assertions - use one of the more specific relations below this one" xsd:string -property_value: editor_note "false" xsd:boolean -domain: BFO:0000002 ! continuant -range: BFO:0000002 ! continuant -is_a: developmentally_related_to ! developmentally related to -inverse_of: developmentally_succeeded_by ! developmentally succeeded by - -[Typedef] -id: developmentally_related_to -name: developmentally related to -def: "A relationship that holds between entities participating in some developmental process (GO:0032502)" [] -xref: RO:0002324 -property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" xsd:string +is_a: RO:0002258 ! developmentally preceded by +inverse_of: RO:0002257 ! developmentally induces [Typedef] id: developmentally_replaces @@ -404862,14 +430740,7 @@ name: developmentally replaces def: "x developmentally replaces y if and only if there is some developmental process that causes x to move or to cease to exist, and for the site that was occupied by x to become occupied by y, where y either comes into existence in this site or moves to this site from somewhere else" [] xref: RO:0002285 property_value: editor_note "This relation is intended for cases such as when we have a bone element replacing its cartilage element precursor. Currently most AOs represent this using 'develops from'. We need to decide whether 'develops from' will be generic and encompass replacement, or whether we need a new name for a generic relation that encompasses replacement and development-via-cell-lineage" xsd:string -is_a: developmentally_preceded_by ! developmentally preceded by - -[Typedef] -id: developmentally_succeeded_by -name: developmentally succeeded by -def: "Inverse of developmentally preceded by" [] -xref: RO:0002286 -is_a: has_developmental_potential_involving ! has developmental potential involving +is_a: RO:0002258 ! developmentally preceded by [Typedef] id: develops_from @@ -404880,8 +430751,8 @@ xref: RO:0002202 domain: BFO:0000004 ! independent continuant range: BFO:0000004 ! independent continuant is_transitive: true -is_a: developmentally_preceded_by ! developmentally preceded by is_a: has_developmental_contribution_from ! has developmental contribution from +is_a: RO:0002258 ! developmentally preceded by inverse_of: develops_into ! develops into [Typedef] @@ -404899,7 +430770,7 @@ def: "x develops_in y if x is located in y whilst x is developing" [] xref: RO:0002226 domain: UBERON:0001062 ! anatomical entity holds_over_chain: directly_develops_from located_in -is_a: developmentally_preceded_by ! developmentally preceded by +is_a: RO:0002258 ! developmentally preceded by [Typedef] id: develops_into @@ -404908,23 +430779,9 @@ def: "inverse of develops from" [] subset: RO:0002259 xref: RO:0002203 is_transitive: true -is_a: developmentally_succeeded_by ! developmentally succeeded by is_a: has_potential_to_develop_into ! has potential to develop into -is_a: has_potential_to_directly_develop_into ! has potential to directly develop into - -[Typedef] -id: device_utilizes_material -name: device utilizes material -def: "X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y." [] -synonym: "utilizes" BROAD [] -xref: RO:0017001 -property_value: curator_notes "A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input." xsd:string -property_value: curator_notes "See github ticket https://github.com/oborel/obo-relations/issues/497" xsd:string -property_value: dc-contributor https://orcid.org/0000-0001-9625-1899 -property_value: dc-contributor https://orcid.org/0000-0003-2620-0345 -property_value: example_of_usage "A diagnostic testing device utilizes a specimen." xsd:string -holds_over_chain: capable_of has_input -creation_date: 2021-11-08T12:00:00Z +is_a: RO:0002286 ! developmentally succeeded by +is_a: RO:0002388 ! has potential to directly develop into [Typedef] id: directly_develops_from @@ -404934,28 +430791,7 @@ comment: TODO - add child relations from DOS synonym: "has developmental precursor" EXACT [] xref: RO:0002207 is_a: develops_from ! develops from -inverse_of: directly_develops_into ! directly develops into - -[Typedef] -id: directly_develops_into -name: directly develops into -def: "inverse of directly develops from" [] -subset: RO:0002259 -xref: RO:0002210 -is_a: develops_into ! develops into - -[Typedef] -id: directly_supplies_and_drains -name: directly supplies and drains -def: "x directly supplies and drains y if and only if x is a capillary, y is an anatomical entity, and x directly supplies and drains y." [] -xref: RO:0020103 -property_value: dc-contributor https://orcid.org/0000-0001-6677-8489 -property_value: dcterms-date "2024-02-01T10:09:59Z" xsd:dateTime -property_value: example_of_usage "alveolar capillary directly supplies and drains some alveolus" xsd:string -domain: UBERON:0001982 ! capillary -range: UBERON:0000061 ! anatomical structure -is_a: drains ! drains -is_a: supplies ! supplies +inverse_of: RO:0002210 ! directly develops into [Typedef] id: distal_to @@ -405038,24 +430874,13 @@ is_a: connected_to ! connected to [Typedef] id: dubious_for_taxon name: dubious for taxon -name: dubious_for_taxon -def: "S dubious_for_taxon T if it is probably the case that no instances of S can be found in any instance of T." [https://orcid.org/0000-0002-6601-2165] +def: "S dubious_for_taxon T if it is probably the case that no instances of S can be found in any instance of T." [] comment: This relation lacks a strong logical interpretation, but can be used in place of never_in_taxon where it is desirable to state that the definition of the class is too strict for the taxon under consideration, but placing a never_in_taxon link would result in a chain of inconsistencies that will take ongoing coordinated effort to resolve. Example: metencephalon in teleost -comment: this relation lacks a strong logical interpretation, but can be used in place of never_in_taxon where it is desirable to state that the definition of the class is too strict for the taxon under consideration, but placing a never_in_taxon link would result in a chain of inconsistencies that will take time to resolve. Example: metencephalon in teleost xref: RO:0002174 property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints is_metadata_tag: true is_class_level: true -[Typedef] -id: ecologically_related_to -name: ecologically related to -def: "A relationship that is mediated in some way by the environment or environmental feature (ENVO:00002297)" [] -subset: ro-eco -xref: RO:0002321 -property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving ecological interactions" xsd:string -property_value: editor_note "Awaiting class for domain/range constraint, see: https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6" xsd:string - [Typedef] id: editor_note name: editor note @@ -405070,18 +430895,9 @@ def: "inverse of ends with" [] subset: ro-eco xref: RO:0002229 is_a: part_of ! part of -is_a: temporally_related_to ! temporally related to +is_a: RO:0002222 ! temporally related to inverse_of: ends_with ! ends with -[Typedef] -id: ends_after -name: ends after -comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X) -subset: ro-eco -xref: RO:0002086 -is_transitive: true -is_a: temporally_related_to ! temporally related to - [Typedef] id: ends_with name: ends with @@ -405090,14 +430906,7 @@ subset: ro-eco xref: RO:0002230 is_transitive: true is_a: has_part ! has part -is_a: temporally_related_to ! temporally related to - -[Typedef] -id: evolutionarily_related_to -name: evolutionarily related to -def: "A relationship that holds via some environmental process" [] -xref: RO:0002320 -property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the process of evolution." xsd:string +is_a: RO:0002222 ! temporally related to [Typedef] id: example_of_usage @@ -405109,13 +430918,11 @@ is_metadata_tag: true [Typedef] id: existence_ends_during name: existence ends during -def: "Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely." [https://orcid.org/0000-0002-6601-2165] def: "x existence ends during y if and only if the time point at which x ends is before or equivalent to the time point at which y ends and after or equivalent to the point at which y starts. Formally: x existence ends during y iff ω(x) <= ω(y) and ω(x) >= α(y)." [] comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription. -synonym: "ceases_to_exist_during" EXACT [] xref: RO:0002492 is_a: existence_ends_during_or_before ! existence ends during or before -is_a: existence_overlaps ! existence overlaps +is_a: RO:0002490 ! existence overlaps transitive_over: part_of ! part of [Typedef] @@ -405124,9 +430931,9 @@ name: existence ends during or before def: "x existence ends during or before y if and only if the time point at which x ends is before or equivalent to the time point at which y ends." [] comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription. xref: RO:0002497 -holds_over_chain: developmentally_succeeded_by existence_ends_during_or_before holds_over_chain: part_of existence_ends_during_or_before -is_a: relation_between_physical_entity_and_a_process_or_stage ! relation between physical entity and a process or stage +holds_over_chain: RO:0002286 existence_ends_during_or_before +is_a: RO:0002487 ! relation between physical entity and a process or stage transitive_over: part_of ! part of transitive_over: precedes ! precedes transitive_over: simultaneous_with ! simultaneous with @@ -405139,14 +430946,6 @@ comment: The relations here were created based on work originally by Fabian Neuh xref: RO:0002493 is_a: existence_ends_during ! existence ends during -[Typedef] -id: existence_overlaps -name: existence overlaps -def: "x existence overlaps y if and only if either (a) the start of x is part of y or (b) the end of x is part of y. Formally: x existence starts and ends during y iff (α(x) >= α(y) & α(x) <= ω(y)) OR (ω(x) <= ω(y) & ω(x) >= α(y))" [] -comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription. -xref: RO:0002490 -is_a: relation_between_physical_entity_and_a_process_or_stage ! relation between physical entity and a process or stage - [Typedef] id: existence_starts_and_ends_during name: existence starts and ends during @@ -405162,8 +430961,8 @@ id: existence_starts_during name: existence starts during def: "x existence starts during y if and only if the time point at which x starts is after or equivalent to the time point at which y starts and before or equivalent to the time point at which y ends. Formally: x existence starts during y iff α(x) >= α(y) & α(x) <= ω(y)." [] xref: RO:0002488 -is_a: existence_overlaps ! existence overlaps is_a: existence_starts_during_or_after ! existence starts during or after +is_a: RO:0002490 ! existence overlaps transitive_over: part_of ! part of [Typedef] @@ -405172,9 +430971,9 @@ name: existence starts during or after def: "x existence starts during or after y if and only if the time point at which x starts is after or equivalent to the time point at which y starts. Formally: x existence starts during or after y iff α (x) >= α (y)." [] comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription. xref: RO:0002496 -holds_over_chain: developmentally_preceded_by existence_starts_during_or_after holds_over_chain: part_of existence_starts_during_or_after -is_a: relation_between_physical_entity_and_a_process_or_stage ! relation between physical entity and a process or stage +holds_over_chain: RO:0002258 existence_starts_during_or_after +is_a: RO:0002487 ! relation between physical entity and a process or stage transitive_over: part_of ! part of transitive_over: preceded_by ! preceded by transitive_over: simultaneous_with ! simultaneous with @@ -405186,30 +430985,11 @@ def: "x starts ends with y if and only if the time point at which x starts is eq xref: RO:0002489 is_a: existence_starts_during ! existence starts during -[Typedef] -id: expressed_in -name: expressed in -def: "x expressed in y if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and the transcription of x is part of the gene expression process (iii) x is a mature gene product such as a protein, and x was translated or otherwise processes from a transcript that was transcribed as part of this gene expression process" [] -xref: RO:0002206 -property_value: example_of_usage "'neural crest cell' SubClassOf expresses some 'Wnt1 gene'" xsd:string -domain: BFO:0000002 ! continuant -range: UBERON:0000465 ! material anatomical entity -is_a: genomically_related_to ! genomically related to -inverse_of: expresses ! expresses -transitive_over: part_of ! part of - -[Typedef] -id: expresses -name: expresses -def: "y expresses x if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and x was transcribed from a gene as part of the gene expression process (iii) x is a mature gene product (protein or RNA), and x was translated or otherwise processed from a transcript that was transcribed as part of the gene expression process." [] -xref: RO:0002292 -is_a: genomically_related_to ! genomically related to - [Typedef] id: extends_fibers_into name: extends_fibers_into def: "X extends_fibers into Y iff there exists some neuron (N) and N has_soma_location X and N 'has synaptic IO in region' some Y" [https://orcid.org/0000-0002-7073-9172] -holds_over_chain: has_soma_location has_synaptic_IO_in_region +holds_over_chain: RO:0002100 RO:0013001 is_symmetric: true is_a: connected_to ! connected to @@ -405271,12 +431051,6 @@ name: page xref: http://xmlns.com/foaf/0.1/page is_metadata_tag: true -[Typedef] -id: formed_as_result_of -name: formed as result of -xref: RO:0002354 -is_a: output_of ! output of - [Typedef] id: function_notes name: function_notes @@ -405293,16 +431067,7 @@ xref: RO:0002328 property_value: curator_notes "This is a grouping relation that collects relations used for the purpose of connecting structure and function" xsd:string [Typedef] -id: genomically_related_to -name: genomically related to -def: "holds between two entities when some genome-level process such as gene expression is involved. This includes transcriptional, spliceosomal events. These relations can be used between either macromolecule entities (such as regions of nucleic acid) or between their abstract informational counterparts." [] -xref: RO:0002330 -property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving the genome of an organism" xsd:string -domain: BFO:0000002 ! continuant -range: BFO:0000002 ! continuant - -[Typedef] -id: has_2D_boundary +id: has_boundary name: has 2D boundary def: "a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity" [] xref: RO:0002002 @@ -405311,7 +431076,7 @@ property_value: editor_note "Although the boundary is two-dimensional, it exists property_value: example_of_usage "my body has 2D boundary the surface of my skin" xsd:string domain: BFO:0000040 ! material entity range: BFO:0000141 ! immaterial entity -is_a: mereotopologically_related_to ! mereotopologically related to +is_a: RO:0002323 ! mereotopologically related to [Typedef] id: has_branching_part @@ -405322,18 +431087,7 @@ subset: RO:0002259 xref: RO:0002569 is_transitive: true is_a: has_part ! has part -is_a: in_branching_relationship_with ! in branching relationship with - -[Typedef] -id: has_characteristic -name: has characteristic -def: "Inverse of characteristic_of" [] -xref: RO:0000053 -property_value: editor_note "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." xsd:string -property_value: example_of_usage "this apple is bearer of this red color" xsd:string -property_value: example_of_usage "this vase is bearer of this fragility" xsd:string -range: BFO:0000020 ! specifically dependent continuant -is_inverse_functional: true +is_a: RO:0002375 ! in branching relationship with [Typedef] id: has_component @@ -405346,30 +431100,6 @@ property_value: editor_note "The definition of 'has component' is still under di property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:Componency is_a: has_part ! has part -[Typedef] -id: has_connecting_branch -name: has connecting branch -def: "inverse of connecting branch of" [] -subset: RO:0002259 -xref: RO:0002253 -is_a: in_branching_relationship_with ! in branching relationship with - -[Typedef] -id: has_cross_section -name: has cross section -def: "s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2." [https://orcid.org/0000-0002-6601-2165] -comment: Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round. -xref: RO:0015011 - -[Typedef] -id: has_derived_by_descendant -name: has derived by descendant -def: "inverse of derived by descent from" [] -subset: RO:0002259 -xref: RO:0002157 -is_transitive: true -is_a: evolutionarily_related_to ! evolutionarily related to - [Typedef] id: has_developmental_contribution_from name: has developmental contribution from @@ -405379,74 +431109,18 @@ property_value: example_of_usage "Mammalian thymus has developmental contributio domain: UBERON:0001062 ! anatomical entity range: UBERON:0001062 ! anatomical entity holds_over_chain: has_part develops_from -is_a: developmentally_preceded_by ! developmentally preceded by -inverse_of: developmentally_contributes_to ! developmentally contributes to - -[Typedef] -id: has_developmental_potential_involving -name: has developmental potential involving -def: "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction)." [] -xref: RO:0002384 -domain: UBERON:0001062 ! anatomical entity -range: UBERON:0001062 ! anatomical entity -is_a: developmentally_related_to ! developmentally related to - -[Typedef] -id: has_end_location -name: has end location -def: "x 'has end location' y if and only if there exists some process z such that x 'ends with' z and z 'occurs in' y" [] -subset: ro-eco -xref: RO:0002232 -domain: BFO:0000015 ! process -range: BFO:0000004 ! independent continuant -holds_over_chain: ends_with occurs_in -is_a: has_part_that_occurs_in ! has part that occurs in - -[Typedef] -id: has_high_plasma_membrane_amount -name: has high plasma membrane amount -def: "A relation between a cell and molecule or complex such that every instance of the cell has a high number of instances of that molecule expressed on the cell surface." [PMID:19243617] -xref: RO:0015015 -property_value: dc-contributor https://orcid.org/0000-0003-1617-8244 -property_value: dc-contributor https://orcid.org/0000-0003-1940-6740 -property_value: example_of_usage "'Ly-76 high positive erythrocyte' equivalent to 'enucleate erythrocyte' and (has_high_plasma_membrane_amount some 'lymphocyte antigen 76 (mouse)')" xsd:string -domain: CL:0000000 ! cell -is_a: has_plasma_membrane_part ! has plasma membrane part +is_a: RO:0002258 ! developmentally preceded by +inverse_of: RO:0002255 ! developmentally contributes to [Typedef] -id: has_input -name: has input -def: "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -subset: ro-eco -xref: RO:0002233 -property_value: seeAlso "https://wiki.geneontology.org/Has_input" xsd:anyURI -domain: BFO:0000015 ! process -holds_over_chain: starts_with has_input -is_a: has_participant ! has participant -inverse_of: input_of ! input of - -[Typedef] -id: has_intermediate -name: has intermediate -def: "p has intermediate c if and only if p has parts p1, p2 and p1 has output c, and p2 has input c" [] -subset: ro-eco -xref: RO:0002505 -property_value: example_of_usage "'lysine biosynthetic process via diaminopimelate' SubClassOf has_intermediate some diaminopimelate" xsd:string -is_a: has_participant ! has participant - -[Typedef] -id: has_low_plasma_membrane_amount -name: has low plasma membrane amount -def: "A relation between a cell and molecule or complex such that every instance of the cell has a low number of instances of that molecule expressed on the cell surface." [PMID:19243617] -xref: RO:0015016 -property_value: dc-contributor https://orcid.org/0000-0003-1617-8244 -property_value: dc-contributor https://orcid.org/0000-0003-1940-6740 -property_value: example_of_usage "'DN2b thymocyte' equivalent to 'DN2 thymocyte' and (has_low_plasma_membrane_amount some 'mast/stem cell growth factor receptor')" xsd:string -domain: CL:0000000 ! cell -is_a: has_plasma_membrane_part ! has plasma membrane part +id: has_fused_element +name: derived from ancestral fusion of +def: "x has_fused_element y iff: there exists some z : x has_part z, z homologous_to y, and y is a distinct element, the boundary between x and z is largely fiat" [] +comment: A has_fused_element B does not imply that A has_part some B: rather than A has_part some B', where B' that has some evolutionary relationship to B. +synonym: "has fused element" BROAD [] +xref: RO:0002374 +property_value: example_of_usage "false" xsd:boolean +is_a: RO:0002156 ! derived by descent from [Typedef] id: has_member @@ -405460,7 +431134,7 @@ id: has_muscle_antagonist name: has muscle antagonist def: "m1 has_muscle_antagonist m2 iff m1 has_muscle_insertion s, m2 has_muscle_insection s, m1 acts in opposition to m2, and m2 is responsible for returning the structure to its initial position." [] xref: RO:0002568 -is_a: biomechanically_related_to ! biomechanically related to +is_a: RO:0002567 ! biomechanically related to [Typedef] id: has_muscle_insertion @@ -405470,7 +431144,7 @@ xref: RO:0002373 property_value: seeAlso http://dbpedia.org/property/insertion domain: UBERON:0000061 {IAO:0000116="We need to import uberon muscle into RO to use as a stricter domain constraint"} ! anatomical structure is_a: attaches_to ! attached to -is_a: biomechanically_related_to ! biomechanically related to +is_a: RO:0002567 ! biomechanically related to [Typedef] id: has_muscle_origin @@ -405480,16 +431154,14 @@ xref: RO:0002372 property_value: seeAlso http://dbpedia.org/property/origin domain: UBERON:0000061 {comment="We need to import uberon muscle to create a stricter domain constraint"} ! anatomical structure is_a: attaches_to ! attached to -is_a: biomechanically_related_to ! biomechanically related to +is_a: RO:0002567 ! biomechanically related to [Typedef] id: has_no_connections_with name: has no connections with -name: has_no_connections_with -def: "A is has_no_connections_with B if there are no parts of A or B that have a connection with the other." [https://orcid.org/0000-0002-6601-2165] +def: "A is has_no_connections_with B if there are no parts of A or B that have a connection with the other." [] xref: RO:0002475 property_value: example_of_usage "'pectoral appendage skeleton' has no connections with 'pelvic appendage skeleton'" xsd:string -expand_assertion_to: "Class: EquivalentTo: (BFO_0000050 some ?X) and (RO_0002170 some (BFO_0000050 some ?Y))" [] is_metadata_tag: true is_class_level: true @@ -405500,25 +431172,9 @@ def: "Ontology annotation property. Relates an ontology to a term that is a desi xref: IAO:0000700 is_metadata_tag: true -[Typedef] -id: has_output -name: has output -def: "p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -subset: ro-eco -xref: RO:0002234 -property_value: seeAlso "https://wiki.geneontology.org/Has_output" xsd:anyURI -holds_over_chain: ends_with has_output -is_a: has_participant ! has participant -inverse_of: output_of ! output of - [Typedef] id: has_part name: has part -name: has_part -namespace: quality namespace: spatial def: "a core relation that holds between a whole and its part" [] subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension @@ -405534,108 +431190,23 @@ property_value: example_of_usage "this year has part this day (occurrent parthoo is_transitive: true is_a: overlaps ! overlaps -[Typedef] -id: has_part_structure_that_is_capable_of -name: has part structure that is capable of -def: "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p" [] -xref: RO:0002584 -property_value: example_of_usage "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" xsd:string -holds_over_chain: has_part capable_of -is_a: causal_relation_between_material_entity_and_a_process ! causal relation between material entity and a process -is_a: functionally_related_to ! functionally related to - -[Typedef] -id: has_part_that_occurs_in -name: has part that occurs in -def: "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c." [] -subset: ro-eco -xref: RO:0002479 -domain: BFO:0000003 ! occurrent -range: BFO:0000004 ! independent continuant - [Typedef] id: has_participant -name: has participant name: has_participant -def: "a relation between a process and a continuant, in which the continuant is somehow involved in the process" [] -xref: RO:0000057 -property_value: editor_note "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." xsd:string -property_value: example_of_usage "this blood coagulation has participant this blood clot" xsd:string -property_value: example_of_usage "this investigation has participant this investigator" xsd:string -property_value: example_of_usage "this process has participant this input material (or this output material)" xsd:string -domain: BFO:0000003 ! occurrent -range: BFO:0000002 ! continuant -holds_over_chain: has_part has_participant - -[Typedef] -id: has_plasma_membrane_part -name: has plasma membrane part -def: "Holds between a cell c and a protein complex or protein p if and only if that cell has as part a plasma_membrane[GO:0005886], and that plasma membrane has p as part." [] -xref: RO:0002104 -property_value: example_of_usage "Every B cell[CL_0000236] has plasma membrane part some immunoglobulin complex[GO_0019814]" xsd:string -domain: UBERON:0000465 ! material anatomical entity -range: UBERON:0000465 ! material anatomical entity -is_a: has_part ! has part [Typedef] id: has_potential_to_develop_into name: has potential to develop into def: "x has the potential to develop into y iff x develops into y or if x is capable of developing into y" [] xref: RO:0002387 -is_a: has_developmental_potential_involving ! has developmental potential involving +is_a: RO:0002384 ! has developmental potential involving [Typedef] id: has_potential_to_developmentally_contribute_to name: has potential to developmentally contribute to def: "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y" [] xref: RO:0002385 -is_a: has_developmental_potential_involving ! has developmental potential involving - -[Typedef] -id: has_potential_to_developmentally_induce -name: has potential to developmentally induce -def: "x has potential to developmentally induce y iff x developmentally induces y or x is capable of developmentally inducing y" [] -xref: RO:0002386 -is_a: has_developmental_potential_involving ! has developmental potential involving - -[Typedef] -id: has_potential_to_directly_develop_into -name: has potential to directly develop into -def: "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y" [] -xref: RO:0002388 -is_a: has_potential_to_develop_into ! has potential to develop into - -[Typedef] -id: has_primary_input -name: has primary input -def: "p has primary input c if (a) p has input c and (b) the goal of process is to modify, consume, or transform c." [GOC:dph, GOC:kva, GOC:pt, https://orcid.org/0000-0002-6601-2165] {comment="PMID:27812932"} -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -xref: RO:0004009 -is_a: has_input ! has input -is_a: has_primary_input_or_output ! has primary input or output -created_by: https://orcid.org/0000-0002-6601-2165 -creation_date: 2018-12-13T11:26:56Z - -[Typedef] -id: has_primary_input_or_output -name: has primary input or output -def: "p 'has primary input ot output' c iff either (a) p 'has primary input' c or (b) p 'has primary output' c." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -xref: RO:0004007 -is_a: has_participant ! has participant -created_by: https://orcid.org/0000-0002-6601-2165 -creation_date: 2018-12-13T11:26:17Z - -[Typedef] -id: has_primary_output -name: has primary output -def: "p has primary output c if (a) p has output c and (b) the goal of process is to modify, produce, or transform c." [GOC:dph, GOC:kva, GOC:pt, https://orcid.org/0000-0002-6601-2165] {comment="PMID:27812932"} -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -xref: RO:0004008 -is_a: has_output ! has output -is_a: has_primary_input_or_output ! has primary input or output -created_by: https://orcid.org/0000-0002-6601-2165 -creation_date: 2018-12-13T11:26:32Z +is_a: RO:0002384 ! has developmental potential involving [Typedef] id: has_quality @@ -405645,7 +431216,7 @@ xref: RO:0000086 property_value: editor_note "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." xsd:string property_value: example_of_usage "this apple has quality this red color" xsd:string range: BFO:0000019 ! quality -is_a: has_characteristic ! has characteristic +is_a: RO:0000053 ! has characteristic [Typedef] id: has_relational_adjective @@ -405654,17 +431225,6 @@ xref: UBPROP:0000007 property_value: curator_notes "Used to connect a class to an adjectival form of its label. For example, a class with label 'intestine' may have a relational adjective 'intestinal'." xsd:string is_metadata_tag: true -[Typedef] -id: has_role -name: has role -def: "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence" [] -xref: RO:0000087 -property_value: editor_note "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists." xsd:string -property_value: example_of_usage "this person has role this investigator role (more colloquially: this person has this role of investigator)" xsd:string -domain: BFO:0000004 ! independent continuant -range: BFO:0000023 ! role -is_a: has_characteristic ! has characteristic - [Typedef] id: has_skeleton name: has skeleton @@ -405680,80 +431240,10 @@ is_a: has_part ! has part inverse_of: skeleton_of ! skeleton of is_asymmetric: true -[Typedef] -id: has_soma_location -name: has soma location -def: "Relation between a neuron and a material anatomical entity that its soma is part of." [] -xref: RO:0002100 -domain: CL:0000540 ! neuron -range: UBERON:0000465 ! material anatomical entity -is_a: overlaps ! overlaps -transitive_over: part_of ! part of - [Typedef] id: has_start name: has_start -[Typedef] -id: has_start_location -name: has start location -def: "x 'has starts location' y if and only if there exists some process z such that x 'starts with' z and z 'occurs in' y" [] -subset: ro-eco -xref: RO:0002231 -domain: BFO:0000015 ! process -range: BFO:0000004 ! independent continuant -holds_over_chain: starts_with occurs_in -is_a: has_part_that_occurs_in ! has part that occurs in - -[Typedef] -id: has_synaptic_IO_in_region -name: has synaptic IO in region -def: "A relationship between a neuron and a region, where the neuron has a functionally relevant number of input and/or output synapses in that region." [] -synonym: "has synaptic input or output in" EXACT [] -xref: RO:0013001 -is_a: has_synaptic_terminal_in ! has synaptic terminal in -transitive_over: part_of ! part of -created_by: https://orcid.org/0000-0002-1373-1705 -creation_date: 2020-07-17T09:26:52Z - -[Typedef] -id: has_synaptic_terminal_in -name: has synaptic terminal in -def: "A general relation between a neuron and some structure in which it either chemically synapses to some target or in which it receives (chemical) synaptic input." [] -xref: RO:0002130 -domain: CL:0000540 ! neuron -is_a: overlaps ! overlaps -transitive_over: part_of ! part of - -[Typedef] -id: has_synaptic_terminal_of -name: has synaptic terminal of -xref: RO:0002006 -is_a: overlaps ! overlaps -inverse_of: has_synaptic_terminal_in ! has synaptic terminal in - -[Typedef] -id: has_target_end_location -name: has target end location -def: "This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from a an initial location to some destination l." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002339 -is_a: results_in_transport_to_from_or_in ! results in transport to from or in -transitive_over: part_of ! part of - -[Typedef] -id: has_target_start_location -name: has target start location -def: "This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from some initial location l to some destination." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002338 -is_a: results_in_transport_to_from_or_in ! results in transport to from or in -transitive_over: part_of ! part of - [Typedef] id: homologous_in name: homologous_in @@ -405767,10 +431257,10 @@ def: "two individual entities d1 and d2 stand in a shares_ancestor_with relation comment: VBO calls this homologous_to xref: RO:0002158 property_value: curator_notes "Consider obsoleting and merging with child relation, 'in homology relationship with'" xsd:string -holds_over_chain: derived_by_descent_from has_derived_by_descendant +holds_over_chain: RO:0002156 RO:0002157 is_symmetric: true is_transitive: true -is_a: evolutionarily_related_to ! evolutionarily related to +is_a: RO:0002320 ! evolutionarily related to [Typedef] id: homology_notes @@ -405823,16 +431313,7 @@ comment: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) xref: RO:0002087 holds_over_chain: starts_with ends_with is_a: preceded_by ! preceded by -inverse_of: immediately_precedes ! immediately precedes - -[Typedef] -id: immediately_precedes -name: immediately precedes -comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y) -subset: ro-eco -xref: RO:0002090 -holds_over_chain: ends_with starts_with -is_a: precedes ! precedes +inverse_of: RO:0002090 ! immediately precedes [Typedef] id: immediately_superficial_to @@ -405858,19 +431339,6 @@ def: "X anterior side of Y <=> if Y is subdivided into two anterior and posterio xref: BSPO:0000123 is_a: part_of ! part of -[Typedef] -id: in_branching_relationship_with -name: in branching relationship with -def: "A relationship that holds between two material entities in a system of connected structures, where the branching relationship holds based on properties of the connecting network." [] -xref: RO:0002375 -property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving branching relationships" xsd:string -property_value: curator_notes "This relation can be used for geographic features (e.g. rivers) as well as anatomical structures (plant branches and roots, leaf veins, animal veins, arteries, nerves)" xsd:string -property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/branching_part_of.png -property_value: seeAlso "https://github.com/obophenotype/uberon/issues/170" xsd:anyURI -domain: BFO:0000040 ! material entity -range: BFO:0000040 ! material entity -is_a: mereotopologically_related_to ! mereotopologically related to - [Typedef] id: in_central_side_of name: in central side of @@ -405990,7 +431458,6 @@ holds_over_chain: develops_from in_taxon holds_over_chain: develops_from_part_of in_taxon holds_over_chain: existence_ends_during in_taxon holds_over_chain: existence_starts_during in_taxon -holds_over_chain: expressed_in in_taxon holds_over_chain: extends_fibers_into in_taxon holds_over_chain: has_developmental_contribution_from in_taxon holds_over_chain: has_part in_taxon @@ -406000,9 +431467,10 @@ holds_over_chain: overlaps in_taxon holds_over_chain: part_of in_taxon holds_over_chain: produced_by in_taxon holds_over_chain: produces in_taxon -holds_over_chain: results_in_developmental_progression_of in_taxon +holds_over_chain: RO:0002206 in_taxon +holds_over_chain: RO:0002295 in_taxon holds_over_chain: supplies in_taxon -is_a: evolutionarily_related_to ! evolutionarily related to +is_a: RO:0002320 ! evolutionarily related to [Typedef] id: in_ventral_side_of @@ -406056,24 +431524,6 @@ def: "X intersects median plane of iff X crosses the midine plane of Y." [] xref: BSPO:0005001 is_a: part_of ! part of -[Typedef] -id: involved_in_or_involved_in_regulation_of -name: involved in or involved in regulation of -def: "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p" [] -xref: RO:0002431 -property_value: editor_note "OWL does not allow defining object properties via a Union" xsd:string -is_a: acts_upstream_of_or_within ! acts upstream of or within -is_a: causal_agent_in_process ! causal agent in process -is_a: functionally_related_to ! functionally related to - -[Typedef] -id: involved_in_regulation_of -name: involved in regulation of -def: "c involved in regulation of p if c is involved in some p' and p' regulates some p" [] -xref: RO:0002428 -is_a: acts_upstream_of ! acts upstream of -is_a: involved_in_or_involved_in_regulation_of ! involved in or involved in regulation of - [Typedef] id: is_count_of name: is count of @@ -406147,114 +431597,28 @@ xref: RO:0002572 domain: BFO:0000141 ! immaterial entity is_a: lumen_of ! lumen of -[Typedef] -id: member_of -name: member of -def: "is member of is a mereological relation between a item and a collection." [] -xref: RO:0002350 -property_value: example_of_usage "An organism that is a member of a population of organisms" xsd:string -is_a: part_of ! part of -inverse_of: has_member ! has member - -[Typedef] -id: mereotopologically_related_to -name: mereotopologically related to -def: "A mereological relationship or a topological relationship" [] -xref: RO:0002323 -property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" xsd:string - [Typedef] id: mutually_spatially_disjoint_with name: mutually spatially disjoint with -name: mutually_spatially_disjoint_with def: "A is mutually_spatially_disjoint_with B if both A and B are classes, and there exists no p such that p is part_of some A and p is part_of some B." [] xref: RO:0002171 property_value: OMO:0002000 "PREFIX owl: \nPREFIX part_of: \nPREFIX mutually_spatially_disjoint_with: \nCONSTRUCT {\n part_of: a owl:ObjectProperty .\n [\n a owl:Restriction ;\n owl:onProperty part_of: ;\n owl:someValuesFrom ?x ;\n owl:disjointWith [\n a owl:Restriction ;\n owl:onProperty part_of: ;\n owl:someValuesFrom ?y\n ]\n ]\n}\nWHERE {\n ?x mutually_spatially_disjoint_with: ?y .\n}" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern" xsd:anyURI property_value: seeAlso RO:0002163 -expand_assertion_to: "Class: EquivalentTo: (BFO_0000050 some ?X) and (BFO_0000050 some ?Y)" [] is_metadata_tag: true is_class_level: true -[Typedef] -id: negatively_regulated_by -name: negatively regulated by -def: "inverse of negatively regulates" [] -subset: RO:0002259 -xref: RO:0002335 -is_a: regulated_by ! regulated by - -[Typedef] -id: negatively_regulates -name: negatively regulates -def: "p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002212 -holds_over_chain: ends_with negatively_regulates -is_a: causally_upstream_of,_negative_effect ! causally upstream of, negative effect -is_a: regulates ! regulates (processual) -inverse_of: negatively_regulated_by ! negatively regulated by - [Typedef] id: never_in_taxon name: never in taxon -name: never_in_taxon -def: "S never_in_taxon T iff: S SubClassOf in_taxon only not T." [PMID:20973947] def: "x never in taxon T if and only if T is a class, and x does not instantiate the class expression \"in taxon some T\". Note that this is a shortcut relation, and should be used as a hasValue restriction in OWL." [] xref: RO:0002161 property_value: example_of_usage "tooth SubClassOf 'never in taxon' value 'Aves'" xsd:string property_value: OMO:0002000 "PREFIX rdfs: \nPREFIX owl: \nPREFIX in_taxon: \nPREFIX never_in_taxon: \nCONSTRUCT {\n in_taxon: a owl:ObjectProperty .\n ?x owl:disjointWith [\n a owl:Restriction ;\n owl:onProperty in_taxon: ;\n owl:someValuesFrom ?taxon\n ] .\n ?x rdfs:subClassOf [\n a owl:Restriction ;\n owl:onProperty in_taxon: ;\n owl:someValuesFrom [\n a owl:Class ;\n owl:complementOf ?taxon\n ]\n ] .\n}\nWHERE {\n ?x never_in_taxon: ?taxon .\n}" xsd:string property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints -expand_assertion_to: "Class: EquivalentTo: ?X and (RO_0002162 some ?Y)" [] -expand_assertion_to: "Class: ?X DisjointWith: RO_0002162 some ?Y " [] is_metadata_tag: true is_class_level: true -[Typedef] -id: obsolete_contains -name: contains -name: obsolete contains -xref: RO:0001019 -property_value: seeAlso https://github.com/oborel/obo-relations/issues/693 -is_obsolete: true - -[Typedef] -id: occurs_across -name: occurs across -def: "A relationship between a process and a barrier, where the process occurs in a region spanning the barrier. For cellular processes the barrier is typically a membrane. Examples include transport across a membrane and membrane depolarization." [] -xref: RO:0002021 -is_a: has_part_that_occurs_in ! has part that occurs in -created_by: https://orcid.org/0000-0002-7073-9172 -creation_date: 2017-07-20T17:19:37Z - -[Typedef] -id: occurs_in -name: occurs in -def: "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" [] -comment: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: BFO:0000066 -property_value: seeAlso "https://wiki.geneontology.org/Occurs_in" xsd:anyURI -domain: BFO:0000003 ! occurrent -range: BFO:0000004 ! independent continuant -holds_over_chain: part_of occurs_in -inverse_of: contains_process ! contains process -transitive_over: part_of ! part of - -[Typedef] -id: only_in_taxon -name: only in taxon -def: "x only in taxon y if and only if x is in taxon y, and there is no other organism z such that y!=z a and x is in taxon z." [] -xref: RO:0002160 -property_value: editor_note "The original intent was to treat this as a macro that expands to 'in taxon' only ?Y - however, this is not necessary if we instead have supplemental axioms that state that each pair of sibling tax have a disjointness axiom using the 'in taxon' property - e.g.\n\n 'in taxon' some Eukaryota DisjointWith 'in taxon' some Eubacteria" xsd:string -property_value: example_of_usage "lactation SubClassOf 'only in taxon' some 'Mammalia'" xsd:string -property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints -is_a: in_taxon ! in taxon - [Typedef] id: orthogonal_to name: orthogonal to @@ -406288,7 +431652,7 @@ xref: RO:0002131 holds_over_chain: has_part overlaps holds_over_chain: part_of part_of is_symmetric: true -is_a: mereotopologically_related_to ! mereotopologically related to +is_a: RO:0002323 ! mereotopologically related to transitive_over: part_of ! part of [Typedef] @@ -406303,8 +431667,6 @@ is_metadata_tag: true [Typedef] id: part_of name: part of -name: part_of -namespace: quality namespace: spatial def: "a core relation that holds between a part and its whole" [] subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension @@ -406326,21 +431688,6 @@ is_transitive: true is_a: overlaps ! overlaps inverse_of: has_part ! has part -[Typedef] -id: part_of_developmental_precursor_of -name: part of developmental precursor of -xref: RO:0002287 -property_value: example_of_usage "'hypopharyngeal eminence' SubClassOf 'part of precursor of' some tongue" xsd:string -holds_over_chain: part_of directly_develops_into -is_a: developmentally_succeeded_by ! developmentally succeeded by - -[Typedef] -id: part_of_structure_that_is_capable_of -name: part of structure that is capable of -def: "this relation holds between c and p when c is part of some c', and c' is capable of p." [] -xref: RO:0002329 -is_a: functionally_related_to ! functionally related to - [Typedef] id: participates_in name: participates in @@ -406351,7 +431698,7 @@ property_value: example_of_usage "this input material (or this output material) property_value: example_of_usage "this investigator participates in this investigation" xsd:string domain: BFO:0000002 ! continuant range: BFO:0000003 ! occurrent -inverse_of: has_participant ! has participant +inverse_of: RO:0000057 ! has participant [Typedef] id: passes_through @@ -406381,29 +431728,6 @@ property_value: preceding_element_is BSPO:0000096 property_value: terminology_notes "gill arch N = PA N-2. the term branchial_arch is ambiguous." xsd:string is_metadata_tag: true -[Typedef] -id: positively_regulated_by -name: positively regulated by -def: "inverse of positively regulates" [] -subset: RO:0002259 -xref: RO:0002336 -is_a: regulated_by ! regulated by - -[Typedef] -id: positively_regulates -name: positively regulates -def: "p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002213 -holds_over_chain: ends_with positively_regulates -holds_over_chain: negatively_regulates negatively_regulates -is_transitive: true -is_a: causally_upstream_of,_positive_effect ! causally upstream of, positive effect -is_a: regulates ! regulates (processual) -inverse_of: positively_regulated_by ! positively regulated by - [Typedef] id: postaxialmost_part_of name: postaxialmost part of @@ -406458,7 +431782,7 @@ domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent holds_over_chain: part_of preceded_by is_transitive: true -is_a: ends_after ! ends after +is_a: RO:0002086 ! ends after inverse_of: precedes ! precedes [Typedef] @@ -406471,7 +431795,7 @@ domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent holds_over_chain: part_of precedes is_transitive: true -is_a: temporally_related_to ! temporally related to +is_a: RO:0002222 ! temporally related to [Typedef] id: preceding_element_is @@ -406483,24 +431807,14 @@ is_metadata_tag: true [Typedef] id: present_in_taxon name: present in taxon -name: present_in_taxon def: "S present_in_taxon T if some instance of T has some S. This does not means that all instances of T have an S - it may only be certain life stages or sexes that have S" [] -def: "S present_in_taxon T if some instance of T has some S. This does not means that all instances of T have an S - it may only be certain life stages or sexes that have S." [https://orcid.org/0000-0002-6601-2165] comment: The SPARQL expansion for this relation introduces new named classes into the ontology. For this reason it is likely that the expansion should only be performed during a QC pipeline; the expanded output should usually not be included in a published version of the ontology. -synonym: "applicable for taxon" EXACT [] xref: RO:0002175 property_value: OMO:0002000 "PREFIX rdfs: \nPREFIX owl: \nPREFIX in_taxon: \nPREFIX present_in_taxon: \nCONSTRUCT {\n in_taxon: a owl:ObjectProperty .\n ?witness rdfs:label ?label .\n ?witness rdfs:subClassOf ?x .\n ?witness rdfs:subClassOf [\n a owl:Restriction ;\n owl:onProperty in_taxon: ;\n owl:someValuesFrom ?taxon\n ] .\n}\nWHERE {\n ?x present_in_taxon: ?taxon .\n BIND(IRI(CONCAT(\n \"http://purl.obolibrary.org/obo/RO_0002175#\",\n MD5(STR(?x)),\n \"-\",\n MD5(STR(?taxon))\n )) as ?witness)\n BIND(CONCAT(STR(?x), \" in taxon \", STR(?taxon)) AS ?label)\n}" xsd:string property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints is_metadata_tag: true is_class_level: true -[Typedef] -id: process_has_causal_agent -name: process has causal agent -def: "Inverse of 'causal agent in process'" [] -xref: RO:0002608 -is_a: causally_related_to ! causally related to - [Typedef] id: produced_by name: produced by @@ -406559,17 +431873,6 @@ def: "X proximalmost part of Y <=> X is in proximal side of Y and X is adjacent xref: BSPO:0001106 is_a: in_proximal_side_of ! in proximal side of -[Typedef] -id: quality_of -name: quality of -def: "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence" [] -comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. -xref: RO:0000080 -property_value: editor_note "A quality inheres in its bearer at all times for which the quality exists." xsd:string -property_value: example_of_usage "this red color is a quality of this apple" xsd:string -is_a: characteristic_of ! characteristic of -inverse_of: has_quality ! has quality - [Typedef] id: ray_number name: ray number @@ -406580,80 +431883,6 @@ property_value: is_count_of UBERON:0002544 property_value: preceding_element_is BSPO:1000000 is_metadata_tag: true -[Typedef] -id: receives_input_from -name: receives input from -xref: RO:0002485 -property_value: editor_note "See notes for inverse relation" xsd:string -is_a: connected_to ! connected to -inverse_of: sends_output_to ! sends output to - -[Typedef] -id: regulated_by -name: regulated by -def: "inverse of regulates" [] -subset: RO:0002259 -xref: RO:0002334 -domain: BFO:0000015 ! process -range: BFO:0000015 ! process -is_transitive: true -is_a: causally_downstream_of_or_within ! causally downstream of or within - -[Typedef] -id: regulates -name: regulates -name: regulates (processual) -def: "p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002211 -property_value: curator_notes "Regulation precludes parthood; the regulatory process may not be within the regulated process." xsd:string -domain: BFO:0000015 ! process -range: BFO:0000015 ! process -holds_over_chain: ends_with regulates -is_transitive: true -is_a: causally_upstream_of ! causally upstream of -inverse_of: regulated_by ! regulated by - -[Typedef] -id: regulates_characteristic -name: regulates characteristic -def: "A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C." [] -xref: RO:0019000 -property_value: dc-contributor https://orcid.org/0000-0002-8688-6599 -domain: BFO:0000015 ! process -range: PATO:0000001 ! quality -holds_over_chain: regulates regulates_characteristic -is_a: causally_related_to ! causally related to - -[Typedef] -id: regulates_levels_of -name: regulates levels of -def: "p regulates levels of c if p regulates some amount (PATO:0000070) of c" [] -xref: RO:0002332 -property_value: example_of_usage "every cellular sphingolipid homeostasis process regulates_level_of some sphingolipid" xsd:string -domain: BFO:0000015 ! process -range: BFO:0000040 ! material entity -is_a: functionally_related_to ! functionally related to - -[Typedef] -id: related_via_localization_to -name: related via localization to -def: "A relationship that holds via some process of localization" [] -xref: RO:0002337 -property_value: curator_notes "Do not use this relation directly. It is a grouping relation." xsd:string -domain: BFO:0000015 ! process -range: BFO:0000002 ! continuant - -[Typedef] -id: relation_between_physical_entity_and_a_process_or_stage -name: relation between physical entity and a process or stage -xref: RO:0002487 -property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, typically connecting an anatomical entity to a biological process or developmental stage." xsd:string -domain: BFO:0000004 ! independent continuant -range: BFO:0000003 ! occurrent - [Typedef] id: repeated_element_number name: repeated element number @@ -406662,75 +431891,6 @@ comment: The range is currently non-negative integer xref: UBPROP:0000102 is_metadata_tag: true -[Typedef] -id: results_in_acquisition_of_features_of -name: results in acquisition of features of -def: "The relationship that links a specified entity with the process that results in an unspecified entity acquiring the features and characteristics of the specified entity" [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002315 -property_value: example_of_usage "an annotation of gene X to cell differentiation with results_in_maturation_of CL:0000057 (fibroblast) means that at the end of the process the input cell that did not have features of a fibroblast, now has the features of a fibroblast." xsd:string -range: UBERON:0000061 ! anatomical structure -is_a: results_in_changes_to_anatomical_or_cellular_structure ! results in changes to anatomical or cellular structure -is_a: results_in_developmental_progression_of ! results in developmental progression of - -[Typedef] -id: results_in_assembly_of -name: results in assembly of -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002588 -is_a: results_in_formation_of_anatomical_entity ! results in formation of anatomical entity -is_a: results_in_organization_of ! results in organization of - -[Typedef] -id: results_in_breakdown_of -name: results in breakdown of -def: "p results in breakdown of c if and only if the execution of p leads to c no longer being present at the end of p" [] -xref: RO:0002586 -is_a: has_input ! has input - -[Typedef] -id: results_in_changes_to_anatomical_or_cellular_structure -name: results in changes to anatomical or cellular structure -def: "p has anatomical participant c iff p has participant c, and c is an anatomical entity" [] -xref: RO:0040036 -is_a: has_participant ! has participant -created_by: https://orcid.org/0000-0002-6601-2165 -creation_date: 2018-09-26T01:08:58Z - -[Typedef] -id: results_in_development_of -name: results in development of -def: "p 'results in development of' c if and only if p is a developmental process and p results in the state of c changing from its initial state as a primordium or anlage through its mature state and to its final state." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002296 -property_value: example_of_usage "every flower development (GO:0009908) results in development of some flower (PO:0009046)" xsd:string -is_a: results_in_changes_to_anatomical_or_cellular_structure ! results in changes to anatomical or cellular structure -is_a: results_in_developmental_progression_of ! results in developmental progression of - -[Typedef] -id: results_in_developmental_progression_of -name: results in developmental progression of -def: "p results in the developmental progression of s iff p is a developmental process and s is an anatomical entity and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss)." [] -xref: RO:0002295 -property_value: editor_note "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint." xsd:string -property_value: seeAlso Ontology:extensions -domain: GO:0008150 ! biological_process -range: UBERON:0001062 ! anatomical entity -is_a: developmentally_related_to ! developmentally related to - -[Typedef] -id: results_in_disassembly_of -name: results in disassembly of -xref: RO:0002590 -is_a: results_in_breakdown_of ! results in breakdown of -is_a: results_in_organization_of ! results in organization of - [Typedef] id: results_in_distribution_of name: results in distribution of @@ -406744,106 +431904,7 @@ name: results in fission of name: results_in_fission_of namespace: external xref: GOREL:0002004 -is_a: has_participant ! has participant - -[Typedef] -id: results_in_formation_of_anatomical_entity -name: results in formation of anatomical entity -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002297 -property_value: example_of_usage "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists." xsd:string -property_value: example_of_usage "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)" xsd:string -is_a: has_output ! has output -is_a: results_in_developmental_progression_of ! results in developmental progression of -inverse_of: formed_as_result_of ! formed as result of - -[Typedef] -id: results_in_fusion_of -name: results in fusion of -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0012008 -is_a: results_in_organization_of ! results in organization of -created_by: https://orcid.org/0000-0003-1813-6857 -creation_date: 2021-02-26T07:28:29Z - -[Typedef] -id: results_in_growth_of -name: results in growth of -xref: RO:0002343 -property_value: example_of_usage "'pollen tube growth' results_in growth_of some 'pollen tube'" xsd:string -is_a: results_in_changes_to_anatomical_or_cellular_structure ! results in changes to anatomical or cellular structure -is_a: results_in_developmental_progression_of ! results in developmental progression of - -[Typedef] -id: results_in_maturation_of -name: results in maturation of -def: "The relationship that links an entity with a process that results in the progression of the entity over time that is independent of changes in it's shape and results in an end point state of that entity." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002299 -property_value: example_of_usage " an annotation of gene X to cell maturation with results_in_maturation_of CL:0000057 (fibroblast) means that the fibroblast is mature at the end of the process" xsd:string -property_value: example_of_usage "bone maturation (GO:0070977) results_in_maturation_of bone (UBERON:0001474)" xsd:string -is_a: results_in_changes_to_anatomical_or_cellular_structure ! results in changes to anatomical or cellular structure -is_a: results_in_developmental_progression_of ! results in developmental progression of - -[Typedef] -id: results_in_morphogenesis_of -name: results in morphogenesis of -def: "The relationship that links an entity with the process that results in the formation and shaping of that entity over time from an immature to a mature state." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002298 -property_value: example_of_usage "an annotation of gene X to cell morphogenesis with results_in_morphogenesis_of CL:0000540 (neuron) means that at the end of the process an input neuron has attained its shape." xsd:string -property_value: example_of_usage "tongue morphogenesis (GO:0043587) results in morphogenesis of tongue (UBERON:0001723)" xsd:string -is_a: results_in_changes_to_anatomical_or_cellular_structure ! results in changes to anatomical or cellular structure -is_a: results_in_developmental_progression_of ! results in developmental progression of - -[Typedef] -id: results_in_movement_of -name: results in movement of -def: "Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c" [] -subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -subset: http://purl.obolibrary.org/obo/valid_for_gocam -xref: RO:0002565 -property_value: curator_notes "" xsd:string -is_a: results_in_changes_to_anatomical_or_cellular_structure ! results in changes to anatomical or cellular structure - -[Typedef] -id: results_in_organization_of -name: results in organization of -def: "p results in organization of c iff p results in the assembly, arrangement of constituent parts, or disassembly of c" [] -xref: RO:0002592 -is_a: results_in_changes_to_anatomical_or_cellular_structure ! results in changes to anatomical or cellular structure - -[Typedef] -id: results_in_transport_across -name: results in transport across -def: "Holds between p and m when p is a transportation or localization process and the outcome of this process is to move c from one location to another, and the route taken by c follows a path that crosses m." [] -subset: http://purl.obolibrary.org/obo/valid_for_go_ontology -xref: RO:0002342 -is_a: occurs_across ! occurs across -is_a: results_in_transport_to_from_or_in ! results in transport to from or in - -[Typedef] -id: results_in_transport_along -name: results in transport along -def: "Holds between p and l when p is a transportation or localization process and the outcome of this process is to move c from one location to another, and the route taken by c follows a path that is aligned_with l " [] -xref: RO:0002341 -is_a: related_via_localization_to ! related via localization to - -[Typedef] -id: results_in_transport_to_from_or_in -name: results in transport to from or in -xref: RO:0002344 -property_value: example_of_usage "'mitochondrial transport' results_in_transport_to_from_or_in some mitochondrion (GO:0005739)" xsd:string -is_a: related_via_localization_to ! related via localization to +is_a: RO:0000057 ! has participant [Typedef] id: rhombomere_number @@ -406873,17 +431934,6 @@ def: "Closer to the right side of the organism. Example: The dorsal fin is right xref: BSPO:0000111 is_transitive: true -[Typedef] -id: role_of -name: role of -def: "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence" [] -comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. -xref: RO:0000081 -property_value: editor_note "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists." xsd:string -property_value: example_of_usage "this investigator role is a role of this person" xsd:string -is_a: characteristic_of ! characteristic of -inverse_of: has_role ! has role - [Typedef] id: scheduled_for_obsoletion_on_or_after name: scheduled for obsoletion on or after @@ -406900,20 +431950,13 @@ namespace: spatial xref: http://www.w3.org/2000/01/rdf-schema#seeAlso is_metadata_tag: true -[Typedef] -id: sends_output_to -name: sends output to -xref: RO:0002486 -property_value: editor_note "This is an exploratory relation. The label is taken from the FMA. It needs aligned with the neuron-specific relations such as has postsynaptic terminal in." xsd:string -is_a: connected_to ! connected to - [Typedef] id: serially_homologous_to name: serially homologous to xref: RO:0002159 is_symmetric: true is_transitive: true -is_a: evolutionarily_related_to ! evolutionarily related to +is_a: RO:0002320 ! evolutionarily related to [Typedef] id: sexually_homologous_to @@ -406929,7 +431972,7 @@ subset: ro-eco xref: RO:0002082 is_symmetric: true is_transitive: true -is_a: before_or_simultaneous_with ! before or simultaneous with +is_a: RO:0002081 ! before or simultaneous with [Typedef] id: site_of @@ -406962,26 +432005,6 @@ name: source atlas xref: UBPROP:0000201 is_metadata_tag: true -[Typedef] -id: spatially_coextensive_with -name: spatially coextensive with -def: "x spatially_coextensive_with y if and inly if x and y have the same location" [] -xref: RO:0002379 -property_value: curator_notes "This relation is added for formal completeness. It is unlikely to be used in many practical scenarios" xsd:string -property_value: example_of_usage "A lump of clay and a statue" xsd:string -is_a: overlaps ! overlaps - -[Typedef] -id: spatially_disjoint_from -name: spatially disjoint from -def: "A is spatially_disjoint_from B if and only if they have no parts in common" [] -subset: ro-eco -xref: RO:0002163 -property_value: curator_notes "Note that it would be possible to use the relation to label the relationship between a near infinite number of structures - between the rings of saturn and my left earlobe. The intent is that this is used for parsiomoniously for disambiguation purposes - for example, between siblings in a jointly exhaustive pairwise disjointness hierarchy" xsd:string -property_value: editor_note "There are two ways to encode this as a shortcut relation. The other possibility to use an annotation assertion between two classes, and expand this to a disjointness axiom. " xsd:string -property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern" xsd:anyURI -is_a: mereotopologically_related_to ! mereotopologically related to - [Typedef] id: starts name: starts @@ -406989,7 +432012,7 @@ def: "inverse of starts with" [] subset: ro-eco xref: RO:0002223 is_a: part_of ! part of -is_a: temporally_related_to ! temporally related to +is_a: RO:0002222 ! temporally related to inverse_of: starts_with ! starts with [Typedef] @@ -407010,7 +432033,7 @@ xref: RO:0002224 property_value: example_of_usage "Every insulin receptor signaling pathway starts with the binding of a ligand to the insulin receptor" xsd:string is_transitive: true is_a: has_part ! has part -is_a: temporally_related_to ! temporally related to +is_a: RO:0002222 ! temporally related to [Typedef] id: structure_notes @@ -407063,16 +432086,8 @@ id: synapsed_by name: synapsed by def: "Relation between an anatomical structure (including cells) and a neuron that chemically synapses to it. " [] xref: RO:0002103 -is_a: receives_input_from ! receives input from -inverse_of: synapsed_to ! synapsed to - -[Typedef] -id: synapsed_to -name: synapsed to -def: " Relation between a neuron and an anatomical structure (including cells) that it chemically synapses to.\n " [] -comment: N1 synapsed_to some N2 \nExpands to:\nN1 SubclassOf ( \n has_part some (\n ‘pre-synaptic membrane ; GO:0042734’ that part_of some ( \n ‘synapse ; GO:0045202’ that has_part some (\n ‘post-synaptic membrane ; GO:0045211’ that part_of some N2)))) -xref: RO:0002120 -is_a: sends_output_to ! sends output to +is_a: RO:0002485 ! receives input from +inverse_of: RO:0002120 ! synapsed to [Typedef] id: taxon_notes @@ -407081,16 +432096,6 @@ def: "Notes on the how instances of this class vary across species." [https://or xref: UBPROP:0000008 is_metadata_tag: true -[Typedef] -id: temporally_related_to -name: temporally related to -comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. -subset: ro-eco -xref: RO:0002222 -property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." xsd:string -domain: BFO:0000003 ! occurrent -range: BFO:0000003 ! occurrent - [Typedef] id: term_tracker_item name: term tracker item @@ -407161,7 +432166,7 @@ property_value: example_of_usage "inferior epigastric vein tributary_of external property_value: seeAlso http://dbpedia.org/ontology/drainsTo property_value: seeAlso "http://en.wikipedia.org/wiki/Tributary" xsd:anyURI is_a: connected_to ! connected to -is_a: in_branching_relationship_with ! in branching relationship with +is_a: RO:0002375 ! in branching relationship with [Typedef] id: trunk_part_of @@ -407187,27 +432192,3 @@ property_value: is_count_of UBERON:0002412 property_value: preceding_element_is BSPO:0000096 is_metadata_tag: true -[Typedef] -id: vessel_drains_blood_from -name: vessel drains blood from -def: "x vessel drains blood from y if and only if x is a vessel that drains blood directly or indirectly from an anatomical structure y." [] -xref: RO:0020102 -property_value: dc-contributor https://orcid.org/0000-0001-6677-8489 -property_value: dcterms-date "2024-02-01T10:09:41Z" xsd:dateTime -property_value: example_of_usage "cystic vein vessel drains blood from gallbladder" xsd:string -domain: UBERON:0001981 ! blood vessel -range: UBERON:0000061 ! anatomical structure -is_a: drains ! drains - -[Typedef] -id: vessel_supplies_blood_to -name: vessel supplies blood to -def: "x vessel supplies blood to y if and only if x is a vessel that supplies blood directly or indirectly to an anatomical structure y." [] -xref: RO:0020101 -property_value: dc-contributor https://orcid.org/0000-0001-6677-8489 -property_value: dcterms-date "2024-02-01T10:09:22Z" xsd:dateTime -property_value: example_of_usage "brachial artery vessel supplies blood to brachialis muscle" xsd:string -domain: UBERON:0001981 ! blood vessel -range: UBERON:0000061 ! anatomical structure -is_a: supplies ! supplies -